LOCUS CM001881 34397752 bp DNA linear CON 26-JUL-2016 DEFINITION Theobroma cacao cultivar Matina 1-6 chromosome 3, whole genome shotgun sequence. ACCESSION CM001881 ALXC01000000 VERSION CM001881.1 DBLINK BioProject: PRJNA51633 BioSample: SAMN02981445 KEYWORDS WGS. SOURCE Theobroma cacao (cacao) ORGANISM Theobroma cacao Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma. REFERENCE 1 (bases 1 to 34397752) AUTHORS Motamayor,J.C., Mockaitis,K., Schmutz,J., Haiminen,N., Iii,D.L., Cornejo,O., Findley,S.D., Zheng,P., Utro,F., Royaert,S., Saski,C., Jenkins,J., Podicheti,R., Zhao,M., Scheffler,B.E., Stack,J.C., Feltus,F.A., Mustiga,G.M., Amores,F., Phillips,W., Marelli,J.P., May,G.D., Shapiro,H., Ma,J., Bustamante,C.D., Schnell,R.J., Main,D., Gilbert,D., Parida,L. and Kuhn,D.N. TITLE The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color JOURNAL Genome Biol. 14 (6), R53 (2013) PUBMED 23731509 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 34397752) AUTHORS Mockaitis,K., Gilbert,D.G., Schmutz,J.J., Kuhn,D., Saski,C., Scheffler,B., Livingstone,D., Jenkins,J., Main,D., Feltus,A., Podicheti,R., Zheng,P., Ficklin,S., Haiminen,N., Royaert,S., May,G.D., Bretting,P., Shapiro,H., Schnell,R., Parida,L. and Motamayor,J.C. TITLE Direct Submission JOURNAL Submitted (31-AUG-2012) Biology Department, Indiana University, 1000 E. 3rd St., Bloomington, IN 47405, USA COMMENT Submission authors: Mockaitis,K., Gilbert,D.G., Podicheti,R., Indiana University, Biology Department, Bloomington, Indiana, USA Schmutz,J.J., Jenkins,J., HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA Saski,C., Feltus,A., Clemson University, CUGI, Clemson, SC, USA May,G.D., NCGR, Santa Fe, New Mexico, USA Kuhn,D., Livingstone,D., Royaert,S., Schnell,R., USDA-ARS, Miami, FL, USA Scheffler,B., USDA-ARS, Stoneville, Mississippi, USA Bretting,P., USDA-ARS, Beltsville, MD, USA Main,D., Zheng,P., Ficklin,S., Washington State University, Pullman, Washington, USA Haiminen,N., Parida,L. IBM, New York, NY, USA Shapiro,H., Motamayor,J.C., Mars, Incorporated, McLean, VA, USA Genome assembly produced by Jeremy Schmutz (Hudson Alpha) This assembly is primarily composed of Roche 454 Titanium STD reads (USDA-ARS, Stoneville), augmented by 6 recombination paired Titanium libraries (CGB, Indiana U), 3 fosmid packaged Sanger sequenced libraries (USDA-ARS, Miami and CUGI, Clemson), and 3 Sanger sequenced BAC Ends libraries (CUGI, Clemson). Included were an additional 2 paired libraries and linear data from a pre-release version of the Roche 1k system (Roche). We also made extensive use of 100x of 90 bp Illumina based paired sequence (NCGR) and 36x paired 101bp sequence (CGB, Indiana U). The assembly process was as follows: ------------------------------------ 1. Cleaned 454 recombination pairs of duplicate pairs and unpaired read data. 2. Discarded STD Titanium reads < 100 bp. 3. Corrected indel errors in the 454 data by aligning all Illumina reads from a 99x set of V2 illumina data. 4. Assembled the 454 data, FES and BES using our in-house version of the Arachne2 assembler, including a step to remove unanchored repetitive sequence. 5. Applied subsequent filtering steps to remove short (< 150bp) and 454 pair only contigs to minimize chimeric projections. 6. Combined the subsequent assembly with the Cacao physical map (CUGI, Clemson) and the existing Cacao genetic marker maps (CATIE, MCCS, and PNG) (USDA-ARS, Miami) to identify potential misassembled scaffolds. Applied 47 scaffold breaks. 7. Rearranged scaffolds based on the genetic map, additional FES data, and the physical map to build chromosome-scale pseudomolecules with 103 joins (represented by 10k N's in the final scaffolds). 8. Screened the resulting scaffolds for mitochondria, chloroplast, unanchored rDNA, and potential prokaryotic contaminants and removed these scaffolds. 9. Sequestered, small, highly repetitive scaffolds (>=95% composed of 24mers occurring at least 4 times in the larger scaffolds) and small scaffolds, less than 1kb of sequence content. 10. Post-processed the final scaffolds to correct 454 insertion/deletion errors using 36x TrueSeq Illumina data . 11. Validated the resulting pseudomolecules against EST data sets collected as part of this project (CGB, Indiana U) and against an 995 kb Sanger based contig (CUGI, Clemson). 12. Inserted the reference sequence into chromosome 5, replacing the WGS sequence in that region. The resulting pseudomolecules (numbered 1-10) capture 94.6% of the assembled sequence and 98.2% of the sample EST set. Assembled Sequence Coverage per Library: ---------------------------------------- LIB COV. INSERT STDDEV ----- ------ --------------- LINE 15.58x N/A TC3A 0.56x 2368 +/- 707 TC3F 0.51x 2545 +/- 801 TC3D 0.56x 3948 +/- 455 TC3B 0.92x 3949 +/- 452 TC5C 0.92x 6278 +/- 662 TC8E 1.04x 7071 +/- 988 TC8F 0.30x 7176 +/- 1258 TC8A 0.97x 8128 +/- 1005 TCFB 0.01x 35552 +/- 4362 TCFA 0.01x 35706 +/- 4341 TCFC 0.26x 36122 +/- 4467 TCCB 0.03x 93963 +/- 14897 TCCC 0.03x 114008 +/- 24776 TCCA 0.04x 127062 +/- 22613 Total 21.74x Final Assembly Statistics: -------------------------- Main genome scaffold total: 711 Main genome contig total: 20103 Main genome scaffold sequence total: 346.0 MB Main genome contig sequence total: 330.8 MB (-> 4.4% gap) Main genome scaffold N/L50: 5/34.4 MB Main genome contig N/L50: 1080/84.4 KB Number of scaffolds > 50 KB: 74% main genome in scaffolds > 50 KB: 98.4% Minimum Number Number Total Total Scaffold Scaffold of of Scaffold Contig Contig Length Scaffolds Contigs Length Length Coverage -------- --------- ------- ----------- ----------- -------- All 711 20,103 345,993,675 330,821,837 95.61% 1 kb 711 20,103 345,993,675 330,821,837 95.61% 2.5 kb 570 19,917 345,771,487 330,635,450 95.62% 5 kb 438 19,654 345,274,253 330,363,628 95.68% 10 kb 260 19,111 343,977,657 329,666,795 95.84% 25 kb 113 17,955 341,704,814 328,516,629 96.14% 50 kb 74 17,270 340,358,744 327,606,137 96.25% 100 kb 36 15,857 337,733,377 325,806,488 96.47% 250 kb 14 13,751 334,312,246 323,434,351 96.75% 500 kb 13 13,655 333,885,350 323,071,182 96.76% 1 mb 11 13,560 332,179,961 321,406,397 96.76% 2.5 mb 10 13,460 330,456,197 319,759,406 96.76% 5 mb 10 13,460 330,456,197 319,759,406 96.76% EST validation: --------------- We used several 454 EST runs to validate expected coding sequence space. We first removed reads < 300bps and removed all duplicate reads (to avoid over counting 454 duplicates). We then placed these at 90% ID and 85% coverage against the assembly. This is a completeness measure, rather than a comprehensive examination of gene space. Organelle sequence excluded: 1015064 total sequences. 992071 sequences (98.15%) place at >90% identity and >85% coverage 4288 library artifacts (0.42%) 9763 sequences have >=50 percent coverage (0.97%) 8942 sequences are not found (0.88%) Organelle sequence included: 1015064 total sequences. 1000012 sequences (98.90%) place at >90% identity and >85% coverage 3883 library artifacts (0.38%) 8485 sequences have >=50 percent coverage (0.84%) 2684 sequences are not found (0.27%) The ESTs that do not place are primarily composed of rDNA and prokaryotic contamination. ##Genome-Assembly-Data-START## Assembly Method :: Jeremy Schmutz v. 2011-08-01 Assembly Name :: Theobroma_cacao_20110822 Genome Coverage :: 15.58x Sequencing Technology :: 454; Illumina; Sanger ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..34397752 /organism="Theobroma cacao" /mol_type="genomic DNA" /cultivar="Matina 1-6" /db_xref="taxon:3641" /chromosome="3" mobile_element complement(127..1740) /note="source:CACAO_LINE_E_132_scaffold_5 6160 7766" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 1748..1821 /note="source:CACAO_LINE_E_216_scaffold_8 1642 1715" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 2839..7794 /note="source:CACAO_LINE_E_216_scaffold_8 2820 7774" /mobile_element_type="retrotransposon:LINE/L1" gene 8876..10021 /locus_tag="TCM_011926" /note="dbxref CacaoGD:Thecc1EG011926" mRNA 8876..10021 /locus_tag="TCM_011926" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.64 coverage" CDS 9472..9729 /locus_tag="TCM_011926" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20532.1" /translation="MNRTRILAFKNKPPLSDRDMIHREMGSQLAKKREYISQILLCST LSVIFEALLVHTCGNLKRVNRYNYRLFVIFFENVKLKNVSK" gene 10406..12435 /locus_tag="TCM_011927" /note="dbxref CacaoGD:Thecc1EG011927" mRNA join(10406..10574,10714..10787,10943..12435) /locus_tag="TCM_011927" /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g028400.1" /inference="similar to AA sequence:ricco:29841.m002835" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12t1" CDS 11003..12205 /locus_tag="TCM_011927" /note="dbxref ricco:29841.m002835" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="EOY20533.1" /db_xref="TAIR:AT1G80150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GW57" /translation="MLSLQAIRRFCHAASIASTTDTFAVVSKQLPSKIPLQESALSKL KAERDPDKLFILFKANAHNKVVIENRFAFEDTVSRLAGARHFDYIEHLLEHQKTLPQG RREGFIMRIIMLYGKAGMIKHALNTFYDMHLYGCERTVKSFNAALKVLIQTHDIRAIE AFLSDVPQKFNVELDTYSVNIVVKAFCEMDFLERAYLVMVEMEKLGIRPDVITYTTLI STFYQKNRWEIGNGLWNLMVYKGCKPNLTTFNVRIQYLVNRRRAWQANDLMRLMRKIG IVPDEVTYNLVIKGFCLAGYLEMAKRVYSSLEFCREYRPNIKIYQTMIHYLCKGGDYN LAYTMCKDCMRKNWFLNVDTIRSLLEGLIKNGQLGKAKMIMKLVRSRVPPFSSTQLDT LQSVLSRT" gene complement(12557..19261) /locus_tag="TCM_011929" /note="dbxref CacaoGD:Thecc1EG011929" mRNA complement(join(12557..12932,14167..14192,14491..14513, 14895..14952,15613..15700,15799..15844,17036..17071, 17196..17267,18257..18369,18995..19261)) /locus_tag="TCM_011929" /product="Peptidase S24/S26A/S26B/S26C family protein" /inference="alignment:exonerate- protein:2:ricco:29841.m002836" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038061t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06160.1" /note="quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc521t8" CDS complement(join(12694..12932,14167..14192,14491..14513, 14895..14952,15613..15700,15799..15844,17036..17071, 17196..17267,18257..18369,18995..19073)) /locus_tag="TCM_011929" /note="paralog of Thecc1EG038061t1" /codon_start=1 /product="Peptidase S24/S26A/S26B/S26C family protein" /protein_id="EOY20534.1" /db_xref="Phytozome:POPTR_0003s06160.1" /db_xref="TAIR:AT1G52600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSR2" /translation="MGWIGDTVDSIKSIQIRQLLTQAVSLGMIVTSALIIWKALMCIT GSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVH EREDTGEVDVLTKGDNNYGDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEK PIIKYILIGALGWYKLGRLKSGSRNVQKFQRRSSTPLALQRSKGATSSQKQKSQCRNA KASAPQHWEGTNSSSCSAAALIAQRCSAEKPPFPAETMPQR" mobile_element 13457..13545 /note="source:CACAO_M_E33933_F9_scaffold_4 18350 18438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20479..21223 /note="source:INTACT687_F13_scaffold_3-int 1296 2062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22914..23128) /note="source:INTACT135F_F90_scaffold_2-int 13784 13998" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(22984..24681) /locus_tag="TCM_011930" /note="dbxref CacaoGD:Thecc1EG011930" mRNA complement(22984..24681) /locus_tag="TCM_011930" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005594t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(23772..24185) /locus_tag="TCM_011930" /note="paralog of Thecc1EG005594t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20535.1" /translation="MSHIKPTLFSLSFSFLRLPQHFQPPFSRKASPLSADLPLSSSTL STDLPLSFVLSQSIFFLSLSHYLNCGSSLFSYPSSPLSQQVCNRPPPQPLSSFAVVAP LARSMLQRLDIARANAKLALQRLKRKRKDEKKNKK" mobile_element 33189..34876 /note="source:CACAO_M_S_E16860_F3_scaffold_3 1 1688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(40026..40084) /note="source:CACAO_Mutator_E206_scaffold_1 5665 5719" /mobile_element_type="transposon:TIR/Mutator" mobile_element 40085..40982 /note="source:CACAO_M_S_E88793_F13_scaffold_7 1 911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40936..49490 /note="source:CACAO_M_E9944_F272_scaffold_2 707 9357" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(49434..49887) /note="source:CACAO_M_S_E119615_F3_scaffold_9 1725 2180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 50144..50335 /note="source:CACAO_M_E3884_F22_scaffold_1 12939 13130" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 56576..58196 /locus_tag="TCM_011934" /note="dbxref CacaoGD:Thecc1EG011934" mRNA 56576..58196 /locus_tag="TCM_011934" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033029t2" /inference="similar to AA sequence:Phytozome:POPTR_0007s08080.1" /note="quality class is medium, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete" CDS 56977..57294 /locus_tag="TCM_011934" /note="paralog of Thecc1EG033029t2" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /protein_id="EOY20536.1" /db_xref="Phytozome:POPTR_0007s08080.1" /db_xref="TAIR:AT1G16480.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HGU3" /translation="MMACNVRDGSSLDALILLIKMLQMKKATNYVTFMSALATCSNTE FVDEEKIVHALVILIGLHENLVVRNAPVTMYAKSGLMIDARKVFQMLPKRNEVTWNAL IGR" gene complement(60192..75567) /locus_tag="TCM_011935" /note="dbxref CacaoGD:Thecc1EG011935" mRNA complement(join(60192..61207,62743..62826,62910..63008, 63449..63507,63920..64004,64287..64384,64730..64876, 64975..65067,65162..65290,65364..65417,65973..66146, 66234..66319,68055..68145,68241..68339,68457..68533, 68619..68787,68922..69013,69333..69443,69717..69822, 69896..69946,70069..70170,70629..70703,70788..71042, 71169..71237,74454..74524,74890..75518)) /locus_tag="TCM_011935" /product="Exocyst complex component sec10 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026964001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026881t2" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b011514t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc927t14" mRNA complement(join(60192..61207,62743..62826,62910..63008, 63130..63165,63449..63507,63920..64004,64287..64384, 64730..64876,64975..65067,65162..65290,65364..65417, 65973..66146,66234..66319,68055..68145,68241..68339, 68457..68533,68619..68787,68922..69013,69333..69443, 69717..69822,69896..69946,70069..70170,70629..70703, 70788..71042,71169..71237,74454..74524,74890..75171)) /locus_tag="TCM_011935" /product="Exocyst complex component sec10 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026964001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026881t2" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc927t14" mRNA complement(join(60698..61207,62741..62826,62910..63008, 63130..63305,63449..63507,63920..64004,64287..64384, 64730..64876,64975..65067,65162..65290,65364..65417, 65973..66146,66234..66319,68055..68145,68241..68339, 68457..68533,68619..68787,68922..69013,69333..69443, 69717..69822,69896..69946,70069..70170,70629..70703, 70788..71042,71169..71237,74454..74524,74890..75518)) /locus_tag="TCM_011935" /product="Exocyst complex component sec10 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026964001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026881t7" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g144t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g144t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc927t14" mRNA complement(join(60698..61207,62743..63008,63130..63305, 63449..63507,63920..64004,64287..64384,64730..64876, 64975..65067,65162..65290,65364..65417,65973..66146, 66234..66319,68055..68145,68241..68339,68457..68533, 68619..68787,68922..69013,69333..69443,69717..69822, 69896..69946,70069..70170,70629..70703,70788..71042, 71169..71237,74454..74524,74890..75518)) /locus_tag="TCM_011935" /product="Exocyst complex component sec10 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026964001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026881t7" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g144t2; alternateUTRof:Thecc1EG011935t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g144t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc927t14" mRNA complement(join(60698..61207,62743..63008,63449..63507, 63919..64004,64287..64384,64730..64876,64975..65067, 65162..65290,65364..65417,65973..66146,66234..66319, 68055..68145,68241..68339,68457..68533,68619..68787, 68922..69013,69333..69443,69717..69822,69896..69946, 70069..70170,70629..70703,70788..71042,71169..71237, 74454..74524,74890..75518)) /locus_tag="TCM_011935" /product="Exocyst complex component sec10 isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026964001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026881t7" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g144t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g144t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc927t14" mRNA complement(join(60698..61207,62743..63008,63449..63507, 63919..64004,64287..64395,64730..64876,64975..65067, 65162..65290,65364..65417,65973..66146,66234..66319, 68055..68145,68241..68339,68457..68533,68619..68787, 68922..69013,69333..69443,69717..69822,69896..69946, 70069..70170,70629..70703,70788..71042,71169..71237, 74454..74524,74890..75518)) /locus_tag="TCM_011935" /product="Exocyst complex component sec10 isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026964001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026881t7" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g144t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g144t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc927t14" mRNA complement(join(60698..61207,62743..62826,62910..63008, 63449..63507,63920..64006,64287..64395,64730..64876, 64975..65067,65162..65290,65364..65417,65973..66146, 66234..66319,68055..68145,68241..68339,68457..68533, 68619..68787,68922..69013,69333..69443,69717..69822, 69896..69946,70069..70170,70629..70703,70788..71042, 71169..71237,74454..74524,74890..75518)) /locus_tag="TCM_011935" /product="Exocyst complex component sec10 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026964001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026881t7" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g144t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g144t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc927t14" CDS complement(join(61129..61207,62743..62826,62910..63008, 63449..63507,63920..64004,64287..64384,64730..64876, 64975..65067,65162..65290,65364..65417,65973..66146, 66234..66319,68055..68145,68241..68339,68457..68533, 68619..68787,68922..69013,69333..69443,69717..69822, 69896..69946,70069..70170,70629..70703,70788..71042, 71169..71237)) /locus_tag="TCM_011935" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG026881t2" /codon_start=1 /product="Exocyst complex component sec10 isoform 5" /protein_id="EOY20541.1" /db_xref="TAIR:AT5G12370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MKERSKSSSASNLPLILDIDDFKGDFSFDALFGNLVNELLPAFQ EEEADTADGHGIGGTDVLPNGHIRAPSGATKFPQGLSAPLFPEVDALLSLFEDSCREL VDLRKQIDGKLYNLKKEVSTQDAKHRKTLTELEKGVDGLFDSFARLDSRISSVGQTAA KIGDHLQSADAQRETASQTIELIKYLMEFNSSLGDLMELSPLFSDDSRVAEAASIAQK LRSFAGEDIARAVPSVVGSVTASRVLEVAVANLQEYCNELENRLLARFDAASQRRELS TMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGSQGSQASPSNVARG LSSLYKEITDTIRKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLLKPSLVNP PPIEEGGLLLYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTECLFSVHKDEYPEHE QASLRQLYQAKLEELRAESQKVSESSGTIGRSKGASVASSHQPISIAVVTEFVRWNEE AISRCTSFSSQPATLAANVKSVFTCLLDQVSQYITDGLEWARDSLIEAAALRERFVLG TIVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPV DGAYAASCEEMATAMSSAEGAAYKGLQQCIETVMAEVERLLSAEQKATDYCSPDDGMA PDHRPTNACTRVVAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLVHWQKFTFNP SGGLRLKRDITEYGEFVRSFNAPSVDEKFELLGILANVFIVAPESLSTLFEGTPSIRK DAQRFIQLREDYKSAKLASRLSSLWSSSS" CDS complement(join(61129..61207,62743..62826,62910..63008, 63130..63165,63449..63507,63920..64004,64287..64384, 64730..64876,64975..65067,65162..65290,65364..65417, 65973..66146,66234..66319,68055..68145,68241..68339, 68457..68533,68619..68787,68922..69013,69333..69443, 69717..69822,69896..69946,70069..70170,70629..70703, 70788..71042,71169..71237)) /locus_tag="TCM_011935" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG026881t2" /codon_start=1 /product="Exocyst complex component sec10 isoform 1" /protein_id="EOY20537.1" /db_xref="TAIR:AT5G12370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MKERSKSSSASNLPLILDIDDFKGDFSFDALFGNLVNELLPAFQ EEEADTADGHGIGGTDVLPNGHIRAPSGATKFPQGLSAPLFPEVDALLSLFEDSCREL VDLRKQIDGKLYNLKKEVSTQDAKHRKTLTELEKGVDGLFDSFARLDSRISSVGQTAA KIGDHLQSADAQRETASQTIELIKYLMEFNSSLGDLMELSPLFSDDSRVAEAASIAQK LRSFAGEDIARAVPSVVGSVTASRVLEVAVANLQEYCNELENRLLARFDAASQRRELS TMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGSQGSQASPSNVARG LSSLYKEITDTIRKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLLKPSLVNP PPIEEGGLLLYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTECLFSVHKDEYPEHE QASLRQLYQAKLEELRAESQKVSESSGTIGRSKGASVASSHQPISIAVVTEFVRWNEE AISRCTSFSSQPATLAANVKSVFTCLLDQVSQYITDGLEWARDSLIEAAALRERFVLG TIVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPV DGAYAASCEEMATAMSSAEGAAYKGLQQCIETVMAEVERLLSAEQKATDYCSPDDGMA PDHRPTNACTRVVAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLVHWQKFTFNP RGIIHQTMSQILSGGLRLKRDITEYGEFVRSFNAPSVDEKFELLGILANVFIVAPESL STLFEGTPSIRKDAQRFIQLREDYKSAKLASRLSSLWSSSS" mRNA complement(join(<61170..61207,62743..62826,62910..63008, 63449..63507,63920..64004,64287..64384,64730..64876, 64975..65067,65162..65290,65364..65417,65973..66146, 66234..66319,68055..68145,68241..68339,68457..68533, 68619..68787,68922..69013,69333..69443,69717..69822, 69896..69946,70069..70170,70629..70703,70788..71042, 71169..71237,74454..74524,74890..75567)) /locus_tag="TCM_011935" /product="Exocyst complex component sec10 isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026964001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026881t2" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc927t14; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc927t14; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g144t7" CDS complement(join(<61171..61207,62743..62826,62910..63008, 63449..63507,63920..64004,64287..64384,64730..64876, 64975..65067,65162..65290,65364..65417,65973..66146, 66234..66319,68055..68145,68241..68339,68457..68533, 68619..68787,68922..69013,69333..69443,69717..69822, 69896..69946,70069..70170,70629..70703,70788..71042, 71169..71237)) /locus_tag="TCM_011935" /note="encoded by transcript variant 6; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG026881t2" /codon_start=1 /product="Exocyst complex component sec10 isoform 6" /protein_id="EOY20542.1" /db_xref="TAIR:AT5G12370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MKERSKSSSASNLPLILDIDDFKGDFSFDALFGNLVNELLPAFQ EEEADTADGHGIGGTDVLPNGHIRAPSGATKFPQGLSAPLFPEVDALLSLFEDSCREL VDLRKQIDGKLYNLKKEVSTQDAKHRKTLTELEKGVDGLFDSFARLDSRISSVGQTAA KIGDHLQSADAQRETASQTIELIKYLMEFNSSLGDLMELSPLFSDDSRVAEAASIAQK LRSFAGEDIARAVPSVVGSVTASRVLEVAVANLQEYCNELENRLLARFDAASQRRELS TMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGSQGSQASPSNVARG LSSLYKEITDTIRKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLLKPSLVNP PPIEEGGLLLYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTECLFSVHKDEYPEHE QASLRQLYQAKLEELRAESQKVSESSGTIGRSKGASVASSHQPISIAVVTEFVRWNEE AISRCTSFSSQPATLAANVKSVFTCLLDQVSQYITDGLEWARDSLIEAAALRERFVLG TIVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPV DGAYAASCEEMATAMSSAEGAAYKGLQQCIETVMAEVERLLSAEQKATDYCSPDDGMA PDHRPTNACTRVVAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLVHWQKFTFNP SGGLRLKRDITEYGEFVRSFNAPSVDEKFELLGILANVFIVAPESLSTLFEGTPSIRK DAQRFIQLREDYKSAK" mRNA complement(join(63130..63305,63449..63507,63920..64005, 64287..64395,64730..64809,64975..65067,65162..65290, 65364..65417,65973..66146,66234..66319,68055..68145, 68241..68339,68457..68533,68619..68787,68922..69013, 69333..69443,69717..69822,69896..69946,70069..70170, 70629..70703,70788..71042,71169..71237,74454..74524, 74890..75518)) /locus_tag="TCM_011935" /product="Exocyst complex component sec10 isoform 9" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026964001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026881t7" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g144t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g144t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc927t14" CDS complement(join(63224..63305,63449..63507,63920..64004, 64287..64384,64730..64876,64975..65067,65162..65290, 65364..65417,65973..66146,66234..66319,68055..68145, 68241..68339,68457..68533,68619..68787,68922..69013, 69333..69443,69717..69822,69896..69946,70069..70170, 70629..70703,70788..71042,71169..71237)) /locus_tag="TCM_011935" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG026881t7" /codon_start=1 /product="Exocyst complex component sec10 isoform 2" /protein_id="EOY20538.1" /db_xref="TAIR:AT5G12370.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MKERSKSSSASNLPLILDIDDFKGDFSFDALFGNLVNELLPAFQ EEEADTADGHGIGGTDVLPNGHIRAPSGATKFPQGLSAPLFPEVDALLSLFEDSCREL VDLRKQIDGKLYNLKKEVSTQDAKHRKTLTELEKGVDGLFDSFARLDSRISSVGQTAA KIGDHLQSADAQRETASQTIELIKYLMEFNSSLGDLMELSPLFSDDSRVAEAASIAQK LRSFAGEDIARAVPSVVGSVTASRVLEVAVANLQEYCNELENRLLARFDAASQRRELS TMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGSQGSQASPSNVARG LSSLYKEITDTIRKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLLKPSLVNP PPIEEGGLLLYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTECLFSVHKDEYPEHE QASLRQLYQAKLEELRAESQKVSESSGTIGRSKGASVASSHQPISIAVVTEFVRWNEE AISRCTSFSSQPATLAANVKSVFTCLLDQVSQYITDGLEWARDSLIEAAALRERFVLG TIVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPV DGAYAASCEEMATAMSSAEGAAYKGLQQCIETVMAEVERLLSAEQKATDYCSPDDGMA PDHRPTNACTRVVAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLVHWQKFTFNP RGIRTLFSRQGIMHQLMSQMLECRPLI" CDS complement(join(63224..63305,63449..63507,63920..64004, 64287..64384,64730..64876,64975..65067,65162..65290, 65364..65417,65973..66146,66234..66319,68055..68145, 68241..68339,68457..68533,68619..68787,68922..69013, 69333..69443,69717..69822,69896..69946,70069..70170, 70629..70703,70788..71042,71169..71237)) /locus_tag="TCM_011935" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG026881t7" /codon_start=1 /product="Exocyst complex component sec10 isoform 2" /protein_id="EOY20539.1" /db_xref="TAIR:AT5G12370.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MKERSKSSSASNLPLILDIDDFKGDFSFDALFGNLVNELLPAFQ EEEADTADGHGIGGTDVLPNGHIRAPSGATKFPQGLSAPLFPEVDALLSLFEDSCREL VDLRKQIDGKLYNLKKEVSTQDAKHRKTLTELEKGVDGLFDSFARLDSRISSVGQTAA KIGDHLQSADAQRETASQTIELIKYLMEFNSSLGDLMELSPLFSDDSRVAEAASIAQK LRSFAGEDIARAVPSVVGSVTASRVLEVAVANLQEYCNELENRLLARFDAASQRRELS TMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGSQGSQASPSNVARG LSSLYKEITDTIRKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLLKPSLVNP PPIEEGGLLLYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTECLFSVHKDEYPEHE QASLRQLYQAKLEELRAESQKVSESSGTIGRSKGASVASSHQPISIAVVTEFVRWNEE AISRCTSFSSQPATLAANVKSVFTCLLDQVSQYITDGLEWARDSLIEAAALRERFVLG TIVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPV DGAYAASCEEMATAMSSAEGAAYKGLQQCIETVMAEVERLLSAEQKATDYCSPDDGMA PDHRPTNACTRVVAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLVHWQKFTFNP RGIRTLFSRQGIMHQLMSQMLECRPLI" CDS complement(join(63455..63507,63919..64004,64287..64384, 64730..64876,64975..65067,65162..65290,65364..65417, 65973..66146,66234..66319,68055..68145,68241..68339, 68457..68533,68619..68787,68922..69013,69333..69443, 69717..69822,69896..69946,70069..70170,70629..70703, 70788..71042,71169..71237)) /locus_tag="TCM_011935" /note="encoded by transcript variant 8; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG026881t7" /codon_start=1 /product="Exocyst complex component sec10 isoform 8" /protein_id="EOY20544.1" /db_xref="TAIR:AT5G12370.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MKERSKSSSASNLPLILDIDDFKGDFSFDALFGNLVNELLPAFQ EEEADTADGHGIGGTDVLPNGHIRAPSGATKFPQGLSAPLFPEVDALLSLFEDSCREL VDLRKQIDGKLYNLKKEVSTQDAKHRKTLTELEKGVDGLFDSFARLDSRISSVGQTAA KIGDHLQSADAQRETASQTIELIKYLMEFNSSLGDLMELSPLFSDDSRVAEAASIAQK LRSFAGEDIARAVPSVVGSVTASRVLEVAVANLQEYCNELENRLLARFDAASQRRELS TMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGSQGSQASPSNVARG LSSLYKEITDTIRKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLLKPSLVNP PPIEEGGLLLYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTECLFSVHKDEYPEHE QASLRQLYQAKLEELRAESQKVSESSGTIGRSKGASVASSHQPISIAVVTEFVRWNEE AISRCTSFSSQPATLAANVKSVFTCLLDQVSQYITDGLEWARDSLIEAAALRERFVLG TIVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPV DGAYAASCEEMATAMSSAEGAAYKGLQQCIETVMAEVERLLSAEQKATDYCSPDDGMA PDHRPTNACTRVVAYLSRVLEAAFTALEGLNKQAFLTELGKPLAQRTTCSLAEVHF" CDS complement(join(63945..64006,64287..64395,64730..64876, 64975..65067,65162..65290,65364..65417,65973..66146, 66234..66319,68055..68145,68241..68339,68457..68533, 68619..68787,68922..69013,69333..69443,69717..69822, 69896..69946,70069..70170,70629..70703,70788..71042, 71169..71237)) /locus_tag="TCM_011935" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG026881t7" /codon_start=1 /product="Exocyst complex component sec10 isoform 4" /protein_id="EOY20540.1" /db_xref="TAIR:AT5G12370.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MKERSKSSSASNLPLILDIDDFKGDFSFDALFGNLVNELLPAFQ EEEADTADGHGIGGTDVLPNGHIRAPSGATKFPQGLSAPLFPEVDALLSLFEDSCREL VDLRKQIDGKLYNLKKEVSTQDAKHRKTLTELEKGVDGLFDSFARLDSRISSVGQTAA KIGDHLQSADAQRETASQTIELIKYLMEFNSSLGDLMELSPLFSDDSRVAEAASIAQK LRSFAGEDIARAVPSVVGSVTASRVLEVAVANLQEYCNELENRLLARFDAASQRRELS TMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGSQGSQASPSNVARG LSSLYKEITDTIRKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLLKPSLVNP PPIEEGGLLLYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTECLFSVHKDEYPEHE QASLRQLYQAKLEELRAESQKVSESSGTIGRSKGASVASSHQPISIAVVTEFVRWNEE AISRCTSFSSQPATLAANVKSVFTCLLDQVSQYITDGLEWARDSLIEAAALRERFVLG TIVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPV DGAYAASCEEMATAMSSAEGAAYKGLQQCIETVMAELRYRLNGYYQLNKRQQITAHLM MEWLPIIVQQMLAQESCCLSFSGPRGCIHCTRGS" CDS complement(join(63955..64004,64287..64395,64730..64876, 64975..65067,65162..65290,65364..65417,65973..66146, 66234..66319,68055..68145,68241..68339,68457..68533, 68619..68787,68922..69013,69333..69443,69717..69822, 69896..69946,70069..70170,70629..70703,70788..71042, 71169..71237)) /locus_tag="TCM_011935" /note="encoded by transcript variant 7; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG026881t7" /codon_start=1 /product="Exocyst complex component sec10 isoform 7" /protein_id="EOY20543.1" /db_xref="TAIR:AT5G12370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MKERSKSSSASNLPLILDIDDFKGDFSFDALFGNLVNELLPAFQ EEEADTADGHGIGGTDVLPNGHIRAPSGATKFPQGLSAPLFPEVDALLSLFEDSCREL VDLRKQIDGKLYNLKKEVSTQDAKHRKTLTELEKGVDGLFDSFARLDSRISSVGQTAA KIGDHLQSADAQRETASQTIELIKYLMEFNSSLGDLMELSPLFSDDSRVAEAASIAQK LRSFAGEDIARAVPSVVGSVTASRVLEVAVANLQEYCNELENRLLARFDAASQRRELS TMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGSQGSQASPSNVARG LSSLYKEITDTIRKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLLKPSLVNP PPIEEGGLLLYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTECLFSVHKDEYPEHE QASLRQLYQAKLEELRAESQKVSESSGTIGRSKGASVASSHQPISIAVVTEFVRWNEE AISRCTSFSSQPATLAANVKSVFTCLLDQVSQYITDGLEWARDSLIEAAALRERFVLG TIVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPV DGAYAASCEEMATAMSSAEGAAYKGLQQCIETVMAELRYRLNGYYQLNKRQQITAHLM MEWLPIIVQQMLAQELLLIFLGSSRLHSLH" CDS complement(join(64738..64809,64975..65067,65162..65290, 65364..65417,65973..66146,66234..66319,68055..68145, 68241..68339,68457..68533,68619..68787,68922..69013, 69333..69443,69717..69822,69896..69946,70069..70170, 70629..70703,70788..71042,71169..71237)) /locus_tag="TCM_011935" /note="encoded by transcript variant 9; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG026881t7" /codon_start=1 /product="Exocyst complex component sec10 isoform 9" /protein_id="EOY20545.1" /db_xref="TAIR:AT5G12370.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MKERSKSSSASNLPLILDIDDFKGDFSFDALFGNLVNELLPAFQ EEEADTADGHGIGGTDVLPNGHIRAPSGATKFPQGLSAPLFPEVDALLSLFEDSCREL VDLRKQIDGKLYNLKKEVSTQDAKHRKTLTELEKGVDGLFDSFARLDSRISSVGQTAA KIGDHLQSADAQRETASQTIELIKYLMEFNSSLGDLMELSPLFSDDSRVAEAASIAQK LRSFAGEDIARAVPSVVGSVTASRVLEVAVANLQEYCNELENRLLARFDAASQRRELS TMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGSQGSQASPSNVARG LSSLYKEITDTIRKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLLKPSLVNP PPIEEGGLLLYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTECLFSVHKDEYPEHE QASLRQLYQAKLEELRAESQKVSESSGTIGRSKGASVASSHQPISIAVVTEFVRWNEE AISRCTSFSSQPATLAANVKSVFTCLLDQVSQYITDGLEWARDSLIEAAALRERFVLG TIVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQKWPQQCLARRVLL IKGFSNALKP" mobile_element complement(76380..81374) /note="source:CACAO_on_S_E176_scaffold_5 3366 8264" /mobile_element_type="transposon:TIR/Mutator" mobile_element 81394..84335 /note="source:CACAO_M_E12104_F281_scaffold_3 1 2942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(84336..88354) /note="source:CACAO_Mutator_E161_scaffold_1 6 4141" /mobile_element_type="transposon:TIR/Mutator" mobile_element 88200..88503 /note="source:scaffold_1_CACTA_0009 12935 13235" /mobile_element_type="transposon:TIR/CACTA" mobile_element 88270..88646 /note="source:CACAO_Mutator_E39_scaffold_1 3175 3554" /mobile_element_type="transposon:TIR/Mutator" gene 93536..94278 /locus_tag="TCM_011941" /note="dbxref CacaoGD:Thecc1EG011941" mRNA 93536..94278 /locus_tag="TCM_011941" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene20612.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028047t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s44370.1" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc9736t1" CDS 93858..94115 /locus_tag="TCM_011941" /note="paralog of Thecc1EG028047t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20546.1" /db_xref="Phytozome:POPTR_0001s44370.1" /translation="MLVKLALVLSIATTIIERAFSFMNLIKSILRNRMGDVWLNDCLV THIERDVFETIDNEAIMKRFPNMKNRRILYLDYMRLFLLKW" mobile_element 97971..105147 /note="source:INTACT710_F62_scaffold_3-int 1 7177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 107230..107279 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4129 4179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(110462..110614) /note="source:CACAO_M_E84368_F4_scaffold_10 11437 11597" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 114500..120043 /note="source:CACAO_M_E12105_F316_scaffold_3 1 5544" /mobile_element_type="retrotransposon:LTR/Copia" gene 120334..138422 /locus_tag="TCM_011942" /note="dbxref CacaoGD:Thecc1EG011942" mRNA join(120334..120474,120751..120827,120909..120995, 125977..126025,126140..126236,133748..133800, 136580..136642,137810..138422) /locus_tag="TCM_011942" /product="Serine/threonine-protein phosphatase 4 regulatory subunit 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g09810.1" /inference="similar to AA sequence:frave:gene12596" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05516t00001" CDS join(120760..120827,120909..120995,125977..126025, 126140..126236,133748..133800,136580..136642, 137810..138076) /locus_tag="TCM_011942" /note="dbxref frave:gene12596" /codon_start=1 /product="Serine/threonine-protein phosphatase 4 regulatory subunit 2" /protein_id="EOY20547.1" /db_xref="TAIR:AT5G17070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HEG4" /translation="MEESALKENSSVATDEEHDLNHGSMDSNLEIAQEEEQVRGILQV VSSTGNFWHNWDKLKSMLSFQLKLVLSEYPEAKMTTDQQNASLGETYSDLVKRLDEEL HSFNEGPPFTLQRICEILLTARSIYPNLSKLAVALEKNLLVTSTLTVCTNPYPQMMPN PEPEKASEEAQPQSNPIQNGVEPVVGDRDEIMTEVEEADIEDMTIDMDAFQEMVGSSE ANSTVAGNS" mobile_element complement(127161..127267) /note="source:scaffold_1_CACTA_0029 7124 7230" /mobile_element_type="transposon:TIR/CACTA" mobile_element 128094..130680 /note="source:CACAO_M_E12106_F1_scaffold_3 1 2587" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(128248..134471) /locus_tag="TCM_011944" /note="dbxref CacaoGD:Thecc1EG011944" mRNA complement(join(128248..128615,128733..128988, 129088..129360,129828..130161,134346..134471)) /locus_tag="TCM_011944" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005025t1" /inference="similar to AA sequence:frave:gene03547" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.64 coverage" CDS complement(join(128453..128615,128733..128988, 129088..129360,129828..130137)) /locus_tag="TCM_011944" /note="dbxref frave:gene03547; paralog of Thecc1EG005025t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20548.1" /translation="MENLEGDHNPLEIQDLENDDEFEIENPFPEDGHANQATRVGLEG QLLHALDLNGGGIKIKVTDFHGKVHAKEYLDWEASLKNYFEWKPMAENQKVLLVKLKL KANKTNGSATNVERNTKSKSILPYGGQNSPGSSTNKGGSNSHIRCFTCGEKGHTSFAC LQRKVNLTEFREELEPIYDKYDEEIEEIDVYPTQGKVCDLMIDGGSMENIISKEAVNK LKLPTSKHPHSYKIGWLKKGHEVLVTTQCLLKFTMGDNLDDEALCDVVPMDVGHILVG RPWFPGSSKISKISKIARYLSAENCEAEGSNEEELKQVNPGIYEKYVKAYSSEMSLF" mobile_element 131299..131453 /note="source:MITE_Tourist_1 170 355" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(132248..132313) /note="source:scaffold_5_CACTA_0580 13294 13361" /mobile_element_type="transposon:TIR/CACTA" mobile_element 135363..135487 /note="source:CACAO_Helitron_S_E29_scaffold_3 1135 1254" /mobile_element_type="transposon:Helitron" mobile_element 135623..135698 /note="source:scaffold_6_CACTA_0699 7085 7165" /mobile_element_type="transposon:TIR/CACTA" mobile_element 139132..140589 /note="source:CACAO_M_S_E16683_F28_scaffold_2 581 2001" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(140173..149711) /locus_tag="TCM_011946" /note="dbxref CacaoGD:Thecc1EG011946" mRNA complement(join(140173..140418,146315..147033, 148557..148674,149014..149525,149637..149711)) /locus_tag="TCM_011946" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage" gene complement(140964..143371) /locus_tag="TCM_011947" /note="dbxref CacaoGD:Thecc1EG011947" mRNA complement(join(140964..141702,143338..143371)) /locus_tag="TCM_011947" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(141361..141594) /locus_tag="TCM_011947" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20550.1" /translation="MSVVESLVELKKHNNKSSNRTKAREKGKSIRDRDRYSKGKSSDY KKPIVAKAAFGDQKEPPKPCFLYGRPHWVHECP" mobile_element complement(142425..142869) /note="source:INTACT445_F217_scaffold_8-int 146 602" /mobile_element_type="retrotransposon:LTR/Unclassified" CDS complement(join(146860..147033,148557..148674, 149014..149018)) /locus_tag="TCM_011946" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20549.1" /translation="MRFRSLGLLLLWLIFVISMFYMVVSCICCLGFAAFGILLAKVSS VRFVASLVDFYVISIFYVVASCFCCWVLLHLGFYLPRQGGFGVFIIHSSVEVST" mobile_element 149851..155693 /note="source:INTACT561_F253_scaffold_5-int 1 4844" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(156405..157798) /locus_tag="TCM_011949" /note="dbxref CacaoGD:Thecc1EG011949" mRNA complement(join(156405..156765,156852..156939, 157120..157298,157395..157798)) /locus_tag="TCM_011949" /product="Metal ion binding protein, putative" /inference="alignment:exonerate- protein:2:ricco:29709.m001232" /inference="similar to AA sequence:ricco:29709.m001232" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g63t1" CDS complement(join(156428..156765,156852..156939, 157120..157298,157395..157518)) /locus_tag="TCM_011949" /note="dbxref ricco:29709.m001232" /codon_start=1 /product="Metal ion binding protein, putative" /protein_id="EOY20551.1" /db_xref="TAIR:AT1G29000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SKJ8" /translation="MGDEKKKDKATTDGVITAVYKVNLHCRQCARKIKKPLIRTQGVH SVDVEIEKGEIKVKGVIDVIKIHKLIEKLSQKKVELVSPQIKEKAAATQTKVKETQEP ILSTTLVKVHLHCDKCEQDLRKKLLKHKGIYSVKTDMKAQTLTVQGTIKSDDLLSYIR KNVHKHAEIVSSKTEAKEEKKEAKKDDVKDGAKSSEKTQVTEFKQQEKVEVKSKEGNT PYFVHYVYAPQLFSDENPNACSIL" gene complement(157860..162011) /locus_tag="TCM_011950" /note="dbxref CacaoGD:Thecc1EG011950" mRNA complement(join(157860..158651,159299..159455, 159819..159920,160116..160173,161328..161416, 161549..162011)) /locus_tag="TCM_011950" /product="Transthyretin-like protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s23930.1" /inference="similar to AA sequence:Phytozome:POPTR_0002s23930.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g83t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc578t4_C2" mRNA complement(join(157860..158654,159299..159455, 159819..159920,160116..160173,161328..161419, 161549..162011)) /locus_tag="TCM_011950" /product="Transthyretin-like protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s23930.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016051001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g83t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc578t4_C2" mRNA complement(join(157909..158654,159299..159455, 159819..159920,160116..160173,161328..161416, 161549..161848)) /locus_tag="TCM_011950" /product="Transthyretin-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s23930.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016051001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc578t4_C2" CDS complement(join(158197..158651,159299..159455, 159819..159920,160116..160173,161328..161416, 161549..161689)) /locus_tag="TCM_011950" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transthyretin-like protein isoform 2" /protein_id="EOY20553.1" /db_xref="Phytozome:POPTR_0002s23930.1" /db_xref="TAIR:AT5G58220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GNG3" /translation="MEEMKVDEKEALACCGSTQFAKQMALASPFPSLDHAVSAATDIW FNKVDVNGWLEAFAAHPQIGESPSPSSHTTSAQWSKGEQSTALATATDLGLQELSDWN ARYRQKFGHVFLICAAGRSATEILAELTNRYWNRPIVELEIAAKEQMKITELRLRKLL SAKAEAVSTGSQYSKVVVSKAEERVSIIGQHLSASLEAFPGKAPQVQARSRPPITTHV LDVSRGSPAAGIEVRLEMWKGGEPCPLFGEMDRGGWVLQGCSTTDRDGRSGHLISMVD AVSPGVYRISFNTGKYCPVGFFPYVSIVFEIKESQKLEHFHVPLLLSPFSFTTYRGS" CDS complement(join(158197..158654,159299..159455, 159819..159920,160116..160173,161328..161416, 161549..161689)) /locus_tag="TCM_011950" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transthyretin-like protein isoform 1" /protein_id="EOY20552.1" /db_xref="Phytozome:GSVIVT01016051001" /db_xref="TAIR:AT5G58220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GNG3" /translation="MEEMKVDEKEALACCGSTQFAKQMALASPFPSLDHAVSAATDIW FNKVDVNGWLEAFAAHPQIGESPSPSSHTTSAQWSKGEQSTALATATDLGLQELSDWN ARYRQKFGHVFLICAAGRSATEILAELTNRYWNRPIVELEIAAKEQMKITELRLRKLL SAKAEAVSTGSQYSKVVVSKAEEERVSIIGQHLSASLEAFPGKAPQVQARSRPPITTH VLDVSRGSPAAGIEVRLEMWKGGEPCPLFGEMDRGGWVLQGCSTTDRDGRSGHLISMV DAVSPGVYRISFNTGKYCPVGFFPYVSIVFEIKESQKLEHFHVPLLLSPFSFTTYRGS " CDS complement(join(158197..158654,159299..159455, 159819..159920,160116..160173,161328..161419, 161549..161689)) /locus_tag="TCM_011950" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transthyretin-like protein isoform 3" /protein_id="EOY20554.1" /db_xref="Phytozome:GSVIVT01016051001" /db_xref="TAIR:AT5G58220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GNG3" /translation="MEEMKVDEKEALACCGSTQFAKQMALASPFPSLDHAVSAATDIW FNKKVDVNGWLEAFAAHPQIGESPSPSSHTTSAQWSKGEQSTALATATDLGLQELSDW NARYRQKFGHVFLICAAGRSATEILAELTNRYWNRPIVELEIAAKEQMKITELRLRKL LSAKAEAVSTGSQYSKVVVSKAEEERVSIIGQHLSASLEAFPGKAPQVQARSRPPITT HVLDVSRGSPAAGIEVRLEMWKGGEPCPLFGEMDRGGWVLQGCSTTDRDGRSGHLISM VDAVSPGVYRISFNTGKYCPVGFFPYVSIVFEIKESQKLEHFHVPLLLSPFSFTTYRG S" gene complement(162136..166728) /locus_tag="TCM_011951" /note="dbxref CacaoGD:Thecc1EG011951" mRNA complement(join(162136..162909,163884..163991, 164074..164388,164549..166728)) /locus_tag="TCM_011951" /product="Plastid transcriptionally active 2 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G74850.1" /inference="similar to AA sequence:frave:gene09509" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1381t5" mRNA complement(join(162159..162899,163884..163991, 164074..164388,164549..166670)) /locus_tag="TCM_011951" /product="Plastid transcriptionally active 2 isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT1G74850.1" /inference="similar to AA sequence:frave:gene09509" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1298t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1381t5" mRNA complement(join(162159..162983,163884..163991, 164074..164388,164549..166670)) /locus_tag="TCM_011951" /product="Plastid transcriptionally active 2 isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G74850.1" /inference="similar to AA sequence:frave:gene09509" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1382t5; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1381t5" CDS complement(join(162573..162909,163884..163991, 164074..164388,164549..166368)) /locus_tag="TCM_011951" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene09509" /codon_start=1 /product="Plastid transcriptionally active 2 isoform 1" /protein_id="EOY20555.1" /db_xref="TAIR:AT1G74850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S7Q2" /translation="MAISIPNHFLALTQPSNFALNRRQLSSNRIFTGGNHSFLSGGAG ICRAKPRELVLGNPSVTVEKGKYSYDVETLINKLSSLPPRGSIARCLDVFRNKLSLND FALVFKEFAHRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCREVFD EMPSQGVTRSVFAYTALINAYGRNGAYNISLELLDKMKKDKVLPSILTYNTVINACAR GGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACANRGLGNEAEMVFRTMNEGGILPD LTTYSYLVESFGKLGKLEKVSELLKEMESGGNLPDIMSYNVLLEAYAKSGSIKEAMGV FKQMQVAGCAPNATTYSILLNLYGRNGRYDDVRELFLEMKESNTEPDAATYNILIQVF GEGGYFKEVVTLFHDMVEENIEPNVKTYDGLIFACGKGGLHEDAKKILLHMNEKCIVP SSRAYTGVIEAYGQAALYEEVLVAFNTMNEVESNPTIETYNSLLQTFARGGLYKEANA ILSRMNETGVAKNRDSFNALIEAFRQGGQFEDAIKAYVEMEKARCDPDERTLEAVLSV YCFAGLVDESNEQFQEIKALGVLPSVMCYCMMLAVYAKCDRWDDAYQLFDEMLTNKVS NIHQVIGKMIRGDYDDDANWQMVEYVFDKLNSEGCGFGIRFYNALLEALWWLRQKERA ARVLNEATKRGLFPELFRKNKLVWSVDVHRMWEGGTYTAVSIWLNSMQKMFLSGDDLP QLATVVVARGQMEKSSIARDIPTAKAAYTFLQDIVSSSFSFPGWNKGRIVCQRSQLKR ILSATGSSSDESKADNIIALSNFPIPSMGVKSSPGDVEYTQHDNAISETKMRRTELMA GTA" CDS complement(join(162707..162899,163884..163991, 164074..164388,164549..166368)) /locus_tag="TCM_011951" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene09509" /codon_start=1 /product="Plastid transcriptionally active 2 isoform 3" /protein_id="EOY20557.1" /db_xref="TAIR:AT1G74850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S7Q2" /translation="MAISIPNHFLALTQPSNFALNRRQLSSNRIFTGGNHSFLSGGAG ICRAKPRELVLGNPSVTVEKGKYSYDVETLINKLSSLPPRGSIARCLDVFRNKLSLND FALVFKEFAHRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCREVFD EMPSQGVTRSVFAYTALINAYGRNGAYNISLELLDKMKKDKVLPSILTYNTVINACAR GGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACANRGLGNEAEMVFRTMNEGGILPD LTTYSYLVESFGKLGKLEKVSELLKEMESGGNLPDIMSYNVLLEAYAKSGSIKEAMGV FKQMQVAGCAPNATTYSILLNLYGRNGRYDDVRELFLEMKESNTEPDAATYNILIQVF GEGGYFKEVVTLFHDMVEENIEPNVKTYDGLIFACGKGGLHEDAKKILLHMNEKCIVP SSRAYTGVIEAYGQAALYEEVLVAFNTMNEVESNPTIETYNSLLQTFARGGLYKEANA ILSRMNETGVAKNRDSFNALIEAFRQGGQFEDAIKAYVEMEKARCDPDERTLEAVLSV YCFAGLVDESNEQFQEIKALGVLPSVMCYCMMLAVYAKCDRWDDAYQLFDEMLTNKVS NIHQVIGKMIRGDYDDDANWQMVEYVFDKLNSEGCGFGIRFYNALLEALWWLRQKERA ARVLNEATKRGLFPELFRKNKLVWSVDVHRMWEGGTYTAVSIWLNSMQKMFLSGDDLP QLATVVVAWRKAQLPVIFQLQKLPIHSCRILCRHHFLSLGGTKGELSVSGLSLSEFCQ PQAHLQMSRKRII" CDS complement(join(162914..162983,163884..163991, 164074..164388,164549..166368)) /locus_tag="TCM_011951" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene09509" /codon_start=1 /product="Plastid transcriptionally active 2 isoform 2" /protein_id="EOY20556.1" /db_xref="TAIR:AT1G74850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S7Q2" /translation="MAISIPNHFLALTQPSNFALNRRQLSSNRIFTGGNHSFLSGGAG ICRAKPRELVLGNPSVTVEKGKYSYDVETLINKLSSLPPRGSIARCLDVFRNKLSLND FALVFKEFAHRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCREVFD EMPSQGVTRSVFAYTALINAYGRNGAYNISLELLDKMKKDKVLPSILTYNTVINACAR GGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACANRGLGNEAEMVFRTMNEGGILPD LTTYSYLVESFGKLGKLEKVSELLKEMESGGNLPDIMSYNVLLEAYAKSGSIKEAMGV FKQMQVAGCAPNATTYSILLNLYGRNGRYDDVRELFLEMKESNTEPDAATYNILIQVF GEGGYFKEVVTLFHDMVEENIEPNVKTYDGLIFACGKGGLHEDAKKILLHMNEKCIVP SSRAYTGVIEAYGQAALYEEVLVAFNTMNEVESNPTIETYNSLLQTFARGGLYKEANA ILSRMNETGVAKNRDSFNALIEAFRQGGQFEDAIKAYVEMEKARCDPDERTLEAVLSV YCFAGLVDESNEQFQEIKALGVLPSVMCYCMMLAVYAKCDRWDDAYQLFDEMLTNKVS NIHQVIGKMIRGDYDDDANWQMVEYVFDKLNSEGCGFGIRFYNALLEALWWLRQKERA ARVLNEATKRGLFPELFRKNKLVWSVDVHRMWEGGTYTAVSIWLNSMQKMFLSGDDLP QLATVVVACTYLMNLVWPVIFLANNYSAMS" gene 168716..169034 /locus_tag="TCM_011952" /note="dbxref CacaoGD:Thecc1EG011952" mRNA 168716..169034 /locus_tag="TCM_011952" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS 168798..169010 /locus_tag="TCM_011952" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20558.1" /translation="MQLLNLLWVGLITNSQRNATYLILQALRETTIFKHALHFGLPFS YYTLVVLKGTCIATICRSPHCLRGFQ" gene 169956..176473 /locus_tag="TCM_011953" /note="dbxref CacaoGD:Thecc1EG011953" mRNA join(169956..170225,170404..170602,171498..172814, 175971..176473) /locus_tag="TCM_011953" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014026" /inference="similar to AA sequence:Phytozome:GSVIVT01007845001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b011530t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g04866t00001" mRNA join(169956..170225,170426..170602,171498..172814, 175971..176380) /locus_tag="TCM_011953" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014026" /inference="similar to AA sequence:Phytozome:GSVIVT01007845001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04866t00001" CDS join(170211..170225,170426..170602,171498..172814, 175971..176006) /locus_tag="TCM_011953" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20559.1" /db_xref="Phytozome:GSVIVT01007845001" /translation="MADSEKLTALKKAYAEIILNTAKEAAARIMVSERKALRYQQELF AAKDEALRMLLRLKQMLDAKVNEAEMISLNQQKRIEELEAQLGEAEDIVRDLRTELRE AQDELEKLTKDRVQCLGKQKSKYDLAASVEISQENGINNFGSARSSSPDAENDFVTVS DIKNSVLNGTYVGNKCSCTDNCYVCNPDFASIVMRRKEPDLYRNGCTQRIRALERICA KNEKTREGEESRDMHTKLSLRADMRRPEEKTDELKVMQSDAYNIIQVLPLSPFHRKRK RAARYKKNKVPSSMNISDQVVATCQESDIFCSESFSLAVADNAQSGENSRIFEHDAQK GLHSPSIPRSPSDAAKGITQSRHEDVGKDDVEFVKACDFQNDKNNDKLLTDKKELTRQ ESGSADNSGVPSCKMELEMVGMSAVNLDVKVSEITEGSSTQPVNNKFLMYTFKRKRKK ELMSSPDRDSSLDDGISPRNTEEKQNGLLDAEKSTLLTESSRDSRRLAQVAHQLISLS EKKWLL" CDS join(170498..170602,171498..172814,175971..176006) /locus_tag="TCM_011953" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY20560.1" /db_xref="Phytozome:GSVIVT01007845001" /translation="MVSERKALRYQQELFAAKDEALRMLLRLKQMLDAKVNEAEMISL NQQKRIEELEAQLGEAEDIVRDLRTELREAQDELEKLTKDRVQCLGKQKSKYDLAASV EISQENGINNFGSARSSSPDAENDFVTVSDIKNSVLNGTYVGNKCSCTDNCYVCNPDF ASIVMRRKEPDLYRNGCTQRIRALERICAKNEKTREGEESRDMHTKLSLRADMRRPEE KTDELKVMQSDAYNIIQVLPLSPFHRKRKRAARYKKNKVPSSMNISDQVVATCQESDI FCSESFSLAVADNAQSGENSRIFEHDAQKGLHSPSIPRSPSDAAKGITQSRHEDVGKD DVEFVKACDFQNDKNNDKLLTDKKELTRQESGSADNSGVPSCKMELEMVGMSAVNLDV KVSEITEGSSTQPVNNKFLMYTFKRKRKKELMSSPDRDSSLDDGISPRNTEEKQNGLL DAEKSTLLTESSRDSRRLAQVAHQLISLSEKKWLL" mobile_element complement(174354..174832) /note="source:CACAO_M_S_E99903_F108_scaffold_9 4207 4691" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 176486..179325 /locus_tag="TCM_011954" /note="dbxref CacaoGD:Thecc1EG011954" mRNA join(176486..177129,178978..179325) /locus_tag="TCM_011954" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g01670.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc350t2_C2" CDS join(176995..177129,178978..179016) /locus_tag="TCM_011954" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20561.1" /translation="MGWASRAGDWAFKGFTAGLGLATIYLTATFSVNVYRGLAWHNAQ SKIEKQGSTEQSA" gene complement(177048..185521) /locus_tag="TCM_011955" /note="dbxref CacaoGD:Thecc1EG011955" mRNA complement(join(177048..177129,178978..179807, 180260..180678,181413..181978,182234..182342, 182470..183525)) /locus_tag="TCM_011955" /product="ARM repeat superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014025" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010125t3" /inference="similar to AA sequence:ricco:30147.m014025" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc364t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc364t6" mRNA complement(join(177072..177129,178978..179798, 180261..180678,181413..181978,182234..182342, 182470..183525)) /locus_tag="TCM_011955" /product="ARM repeat superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014025" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010125t3" /inference="similar to AA sequence:ricco:30147.m014025" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc366t10; alternateUTRof:Thecc1EG011955t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc364t6" mRNA complement(join(179545..179798,180261..180678, 181413..181978,182234..182342,182470..183358, 184849..185521)) /locus_tag="TCM_011955" /product="ARM repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014025" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010125t5" /inference="similar to AA sequence:ricco:30147.m014025" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc364t6" CDS complement(join(180277..180678,181413..181978, 182234..182342,182470..183358,184849..184946)) /locus_tag="TCM_011955" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014025; paralog of Thecc1EG010125t5" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 1" /protein_id="EOY20562.1" /db_xref="TAIR:AT5G62580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I341" /translation="MQCRFRNPTHHRNLVHSFVQKNFLHVYITLHDRRGGTSVISQHW GLAQCHRHHHRQHRRRSETSKKEDMAQSFKLKINTLLNKLGDRDTFSLAAAELESVSR NLDAISLPTFLSCILSVDSSDKCGVRKQCVKLVSVLAVTYPNSLPHFLHKILSSLLRR LRDPDSAVRSACVDAVSALSTNLTKCNFSSSFLKPLSDALFTEQEPNAQIGAALCLAA AIDGSPDPDAVRLGRMLTKLEKLVKSDACKAKAAVMVVIGSVIGSGGASNLSQGMMKG LVGCLIGFLSSEDWAARKGAAEALGRLAIAERDSLAEFKTSCMKVFEARRFDKVKAAR EVMSQMLEAWKQVPDFSEEASPPPLSQASSKEDASDGRYPPGSKISSNVDVAVPQTRK KPTFTTRSTPPESSFATTARKRSPLKATIQKVNGKKPLDWRLEIAVPHAANVTGACED SLKERSENVSRRRNNENVKSAKSDIKRVLFSNKNSDDKMHKFGGSKSGSRVAPCHEET PESTVVVSNASENLNANHKDSEDLSLIRSQLVQIEKQQSSLLDLLQRFVCSSQTGMHS LETRVHGLELALDEISYDLAVSTGRMSTSSRTTCCLLPAAGFLSSKFWRKTEGRYATS RFSTSSGTPSVAATRCRADRNWNAEAFKLENHRLRLQGGGGFIMNPLAEIHGDSRRVS EIAHQ" CDS complement(join(180277..180678,181413..181978, 182234..182342,182470..183252)) /locus_tag="TCM_011955" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014025; paralog of Thecc1EG010125t3" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 2" /protein_id="EOY20563.1" /db_xref="TAIR:AT5G62580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I341" /translation="MAQSFKLKINTLLNKLGDRDTFSLAAAELESVSRNLDAISLPTF LSCILSVDSSDKCGVRKQCVKLVSVLAVTYPNSLPHFLHKILSSLLRRLRDPDSAVRS ACVDAVSALSTNLTKCNFSSSFLKPLSDALFTEQEPNAQIGAALCLAAAIDGSPDPDA VRLGRMLTKLEKLVKSDACKAKAAVMVVIGSVIGSGGASNLSQGMMKGLVGCLIGFLS SEDWAARKGAAEALGRLAIAERDSLAEFKTSCMKVFEARRFDKVKAAREVMSQMLEAW KQVPDFSEEASPPPLSQASSKEDASDGRYPPGSKISSNVDVAVPQTRKKPTFTTRSTP PESSFATTARKRSPLKATIQKVNGKKPLDWRLEIAVPHAANVTGACEDSLKERSENVS RRRNNENVKSAKSDIKRVLFSNKNSDDKMHKFGGSKSGSRVAPCHEETPESTVVVSNA SENLNANHKDSEDLSLIRSQLVQIEKQQSSLLDLLQRFVCSSQTGMHSLETRVHGLEL ALDEISYDLAVSTGRMSTSSRTTCCLLPAAGFLSSKFWRKTEGRYATSRFSTSSGTPS VAATRCRADRNWNAEAFKLENHRLRLQGGGGFIMNPLAEIHGDSRRVSEIAHQ" CDS complement(join(180277..180678,181413..181978, 182234..182342,182470..183252)) /locus_tag="TCM_011955" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014025; paralog of Thecc1EG010125t3" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 2" /protein_id="EOY20564.1" /db_xref="TAIR:AT5G62580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I341" /translation="MAQSFKLKINTLLNKLGDRDTFSLAAAELESVSRNLDAISLPTF LSCILSVDSSDKCGVRKQCVKLVSVLAVTYPNSLPHFLHKILSSLLRRLRDPDSAVRS ACVDAVSALSTNLTKCNFSSSFLKPLSDALFTEQEPNAQIGAALCLAAAIDGSPDPDA VRLGRMLTKLEKLVKSDACKAKAAVMVVIGSVIGSGGASNLSQGMMKGLVGCLIGFLS SEDWAARKGAAEALGRLAIAERDSLAEFKTSCMKVFEARRFDKVKAAREVMSQMLEAW KQVPDFSEEASPPPLSQASSKEDASDGRYPPGSKISSNVDVAVPQTRKKPTFTTRSTP PESSFATTARKRSPLKATIQKVNGKKPLDWRLEIAVPHAANVTGACEDSLKERSENVS RRRNNENVKSAKSDIKRVLFSNKNSDDKMHKFGGSKSGSRVAPCHEETPESTVVVSNA SENLNANHKDSEDLSLIRSQLVQIEKQQSSLLDLLQRFVCSSQTGMHSLETRVHGLEL ALDEISYDLAVSTGRMSTSSRTTCCLLPAAGFLSSKFWRKTEGRYATSRFSTSSGTPS VAATRCRADRNWNAEAFKLENHRLRLQGGGGFIMNPLAEIHGDSRRVSEIAHQ" mobile_element 184140..184849 /note="source:CACAO_on_E373_scaffold_1 6 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(187899..193676) /locus_tag="TCM_011956" /note="dbxref CacaoGD:Thecc1EG011956" mRNA complement(join(187899..188386,189173..189214, 189306..189410,190143..190187,190732..190842, 192625..192745,193244..193676)) /locus_tag="TCM_011956" /product="RHOMBOID-like protein 12 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008119001" /inference="similar to AA sequence:Phytozome:GSVIVT01008119001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g79t6; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc52t9" mRNA complement(join(187899..188386,189173..189214, 189306..189410,190143..190187,190732..190842, 191766..191885,192625..192745,193244..193676)) /locus_tag="TCM_011956" /product="RHOMBOID-like protein 12 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008119001" /inference="similar to AA sequence:Phytozome:GSVIVT01008119001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g79t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc52t9" mRNA complement(join(187953..188386,188608..188781, 189173..189214,189306..189410,190143..190217, 190732..190842,191766..191885,192625..192745, 193244..193674)) /locus_tag="TCM_011956" /product="RHOMBOID-like protein 12 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008119001" /inference="similar to AA sequence:Phytozome:GSVIVT01008119001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc52t9" CDS complement(join(188297..188386,189173..189214, 189306..189410,190143..190187,190732..190842, 192625..192745,193244..193629)) /locus_tag="TCM_011956" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="RHOMBOID-like protein 12 isoform 4" /protein_id="EOY20568.1" /db_xref="Phytozome:GSVIVT01008119001" /db_xref="TAIR:AT1G18600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BSH8" /translation="MQRLLFLKQASSSFSKALTKTSSLSSLLHSFPYKTFSSIAKPTV DNQFLNSSFSHPFHHHSFPWRSQLSLTGEIRGFLSYPVVAKRFWLNFSSIHLKTSGKS LLGCRVWFLRPQIPRGRFDFGLQTSRWRLWFQRLTASDMVLGLIITNVAVFLLWRIAD RKFMMNNFMIGRIFGPEYLLKLYLAGAIGGSVFYLVHHAFLALSSKGHAMWMMDPSKT PGLGASGAVNAIMLLDIFLNPKATLYFDFIIPVPAMLLGIFLIGKDVLRIIEGNSHIS GSAHLGGAAVAAIAWARLRRGRF" CDS complement(join(188297..188386,189173..189214, 189306..189410,190143..190187,190732..190842, 191766..191885,192625..192745,193244..193629)) /locus_tag="TCM_011956" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RHOMBOID-like protein 12 isoform 3" /protein_id="EOY20567.1" /db_xref="Phytozome:GSVIVT01008119001" /db_xref="TAIR:AT1G18600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDD8" /translation="MQRLLFLKQASSSFSKALTKTSSLSSLLHSFPYKTFSSIAKPTV DNQFLNSSFSHPFHHHSFPWRSQLSLTGEIRGFLSYPVVAKRFWLNFSSIHLKTSGKS LLGCRVWFLRPQIPRGRFDFGLQTSRWRLWFQRLTASDMVLGLIITNVAVFLLWRIAD RKFMMNNFMVSLDNFKSGRLHTLITSAFSHIDIEHIISNMIGLYFFGSNIGRIFGPEY LLKLYLAGAIGGSVFYLVHHAFLALSSKGHAMWMMDPSKTPGLGASGAVNAIMLLDIF LNPKATLYFDFIIPVPAMLLGIFLIGKDVLRIIEGNSHISGSAHLGGAAVAAIAWARL RRGRF" CDS complement(join(188297..188386,188608..188781, 189173..189214,189306..189410,190143..190217, 190732..190842,191766..191885,192625..192745, 193244..193629)) /locus_tag="TCM_011956" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RHOMBOID-like protein 12 isoform 1" /protein_id="EOY20565.1" /db_xref="Phytozome:GSVIVT01008119001" /db_xref="TAIR:AT1G18600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDD8" /translation="MQRLLFLKQASSSFSKALTKTSSLSSLLHSFPYKTFSSIAKPTV DNQFLNSSFSHPFHHHSFPWRSQLSLTGEIRGFLSYPVVAKRFWLNFSSIHLKTSGKS LLGCRVWFLRPQIPRGRFDFGLQTSRWRLWFQRLTASDMVLGLIITNVAVFLLWRIAD RKFMMNNFMVSLDNFKSGRLHTLITSAFSHIDIEHIISNMIGLYFFGSNIGRIFGPEY LLKLYLAGAIGGSVFYLVHHAFLALSSKSFLTLSHLPQGHAMWMMDPSKTPGLGASGA VNAIMLLDIFLNPKATLYFDFIIPVPAMLLGIFLIGKDVLRIIEICGHNSTSFPHLQL GIKVFRTPPDAFQELLLKDLIYIMWPGTIRLNFVGDNHLYDFIWGNSHISGSAHLGGA AVAAIAWARLRRGRF" mRNA complement(join(188358..188906,189173..189214, 189306..189410,190143..190187,190732..190842, 191766..191885,192625..192745,193244..193642)) /locus_tag="TCM_011956" /product="RHOMBOID-like protein 12 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008119001" /inference="similar to AA sequence:Phytozome:GSVIVT01008119001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc52t9; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc52t9" CDS complement(join(188835..188906,189173..189214, 189306..189410,190143..190187,190732..190842, 191766..191885,192625..192745,193244..193629)) /locus_tag="TCM_011956" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RHOMBOID-like protein 12 isoform 2" /protein_id="EOY20566.1" /db_xref="Phytozome:GSVIVT01008119001" /db_xref="TAIR:AT1G18600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDD8" /translation="MQRLLFLKQASSSFSKALTKTSSLSSLLHSFPYKTFSSIAKPTV DNQFLNSSFSHPFHHHSFPWRSQLSLTGEIRGFLSYPVVAKRFWLNFSSIHLKTSGKS LLGCRVWFLRPQIPRGRFDFGLQTSRWRLWFQRLTASDMVLGLIITNVAVFLLWRIAD RKFMMNNFMVSLDNFKSGRLHTLITSAFSHIDIEHIISNMIGLYFFGSNIGRIFGPEY LLKLYLAGAIGGSVFYLVHHAFLALSSKGHAMWMMDPSKTPGLGASGAVNAIMLLDIF LNPKATLYFDFIIPVPAMLLGIFLIGKDVLRIIEFMAFNALFHKFEGHPLLSMLAYQ" mobile_element 194083..194286 /note="source:CACAO_MITE120_scaffold_7 10 228" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(194103..194745) /note="source:MITE_Unknow_2_24 2 668" /mobile_element_type="transposon:TIR/MITE" mobile_element 195597..195896 /note="source:scaffold_4_CACTA_0482 5900 6226" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(195910..195940) /note="source:CACAO_M_E1841_F5_scaffold_1 26437 26528" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(195941..197485) /note="source:scaffold_6_CACTA_0707 4908 6456" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(197486..198516) /note="source:CACAO_M_E1841_F5_scaffold_1 23278 26436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(198598..198696) /note="source:scaffold_9_CACTA_0927 8027 8126" /mobile_element_type="transposon:TIR/CACTA" mobile_element 198604..198715 /note="source:CACAO_M_S_E101631_F270_scaffold_9 2902 3018" /mobile_element_type="retrotransposon:LTR/Copia" gene 199849..201695 /locus_tag="TCM_011957" /note="dbxref CacaoGD:Thecc1EG011957" mRNA join(199849..200202,200311..200371,200469..>201212) /locus_tag="TCM_011957" /product="RING/U-box superfamily protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene09504" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08080.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08080.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc238t6; inference alignment:Newbler:10:TSA:cgbaP2_g07423t00001" mRNA join(199945..200202,200311..201695) /locus_tag="TCM_011957" /product="RING/U-box superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08080.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08080.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b011535t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g07423t00001" mRNA join(199949..200202,200311..200371,200458..201499) /locus_tag="TCM_011957" /product="RING/U-box superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08080.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07423t00001; inference alignment:Newbler:10:TSA:cgbaP2_g07423t00001" CDS join(200128..200202,200311..200371,200458..201362) /locus_tag="TCM_011957" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 1" /protein_id="EOY20569.1" /db_xref="Phytozome:POPTR_0015s08080.1" /db_xref="TAIR:AT5G62910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I342" /translation="MDSDSINNASSTSVHNGKDFSRKKRRSAKLKQCKLDARREQWLS QSVVKNKVCCKAGTNGGDSKRTPRGERDSSLENLEMRRRGEANGGGENGSVQHESDSE SLPSNSPTSSLLLGGTGSGTSFTNSSSGSTSSGGCCSGSITEEEGDDGCLDDWEAVAD ALAADDDKQEMERNENYRENLCSGSTPEHEPNPQLGLNGARSDLRNSKPECQRTVQMA TGTSRAWRVDDAFRPQTLPNLSKQRSFPATDRHFGQGGVSWVRSSAFSPPSSCPICCE DLDFTDSSFLPCLCGFRLCLFCHKRILEDDGRCPGCRKAYEHDPMEAEASIQGGSMTF RLARSCSMIARS" CDS join(200342..200371,200469..>201212) /locus_tag="TCM_011957" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 2" /protein_id="EOY20570.1" /db_xref="Phytozome:POPTR_0015s08080.1" /db_xref="TAIR:AT5G62910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I342" /translation="MLAASNGFRKNKVCCKAGTNGGDSKRTPRGERDSSLENLEMRRR GEANGGGENGSVQHESDSESLPSNSPTSSLLLGGTGSGTSFTNSSSGSTSSGGCCSGS ITEEEGDDGCLDDWEAVADALAADDDKQEMERNENYRENLCSGSTPEHEPNPQLGLNG ARSDLRNSKPECQRTVQMATGTSRAWRVDDAFRPQTLPNLSKQRSFPATDRHFGQGGV SWVRSSAFSPPSSCPICCEDLDFTDSSFLPCLCGFRLCLF" CDS 200559..201362 /locus_tag="TCM_011957" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 3" /protein_id="EOY20571.1" /db_xref="Phytozome:POPTR_0015s08080.1" /db_xref="TAIR:AT5G62910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I342" /translation="MRRRGEANGGGENGSVQHESDSESLPSNSPTSSLLLGGTGSGTS FTNSSSGSTSSGGCCSGSITEEEGDDGCLDDWEAVADALAADDDKQEMERNENYRENL CSGSTPEHEPNPQLGLNGARSDLRNSKPECQRTVQMATGTSRAWRVDDAFRPQTLPNL SKQRSFPATDRHFGQGGVSWVRSSAFSPPSSCPICCEDLDFTDSSFLPCLCGFRLCLF CHKRILEDDGRCPGCRKAYEHDPMEAEASIQGGSMTFRLARSCSMIARS" gene 203430..204070 /locus_tag="TCM_011958" /note="dbxref CacaoGD:Thecc1EG011958" mRNA join(203430..203569,203699..203777,203890..204070) /locus_tag="TCM_011958" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3722t1" CDS join(203712..203777,203890..203976) /locus_tag="TCM_011958" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20572.1" /translation="MILADVTRSSSGREEYCLCHSKDFTAHSSTRTNVYPSSQGDGMK GASQVL" gene complement(204575..208373) /locus_tag="TCM_011959" /note="dbxref CacaoGD:Thecc1EG011959" mRNA complement(join(204575..205582,205653..206432, 206702..207257,207970..208373)) /locus_tag="TCM_011959" /product="Disease resistance protein, putative" /inference="alignment:exonerate-protein:2:frave:gene09503" /inference="similar to AA sequence:ricco:30147.m014023" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1791t3" CDS complement(join(204863..205582,205653..206432, 206702..207040)) /locus_tag="TCM_011959" /note="dbxref ricco:30147.m014023" /codon_start=1 /product="Disease resistance protein, putative" /protein_id="EOY20573.1" /db_xref="TAIR:AT3G48080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PFG4" /translation="MDSLPLGEEVIQKACSIAMEAHNYPEAPCRVENSPSSSDVFFTF PGSWSVADWFTRLPFGETKVDPSKLLSPKGKDKVATSLRSIGRDELATVNEGFWKRLE MILANPSLQSEVEKAIADKKQIVFTGHSSAGAVAILATVWFLENYIKPEITRMSPLCV TFGSPLVADFIFNHALRRENWSHCFIHFVMRYDIVPRILLAPLSSMERELEQILYLLN PKPLFPSQGSTRVASQFYQTVMRNASALTSHAACQLMGNANPILETVASFIELSPYRP CGTFVFCTGNGKLVVVRNADAVLQLLFYSTQLCSENELEEVAERSLNSHFDYQSELRE RLKMQNVVHLDHLDGLPLSSNGAAAENIATSMALNELGLSTRARLCLRAAGEQEKQKL SNQQRMDRKKADIEAGLAMLEDYKSKCAVCQVGYYDAFRSSKDEDDFKANVKRLELTG IWDEIVEMLNRYELPEGFESRKEWVELSTRYRRIVEPLDVANYYRHAKNEDTGPYMDK GRPRRYKYTQRWREHALRMPVGSSAESSFWAEVEELQLHRRTRPGAFEEIRETILNLE RKLKEWIDGEHISRDVFLEGSSFTKLWKSLPQQHKSVSCLQGQINS" gene 207403..209788 /locus_tag="TCM_011960" /note="dbxref CacaoGD:Thecc1EG011960" mRNA join(207403..207471,209216..209788) /locus_tag="TCM_011960" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025497t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 209319..209753 /locus_tag="TCM_011960" /note="paralog of Thecc1EG025497t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20574.1" /translation="MDFRGSIGDADQVFDMCKIRVASWTKAKWPQDFRSILDTFRSPI AGAVTKKEMEKPSVVDSWTKPSQGEMKFKADGAARGCSGEAGIGGALRDEKGQIKILF LKCIGEGDSNLAEVMAIREAFLIFFCFEMGAVSYFDHWKRLG" gene complement(209804..213798) /locus_tag="TCM_011961" /note="dbxref CacaoGD:Thecc1EG011961" mRNA complement(join(209804..211898,212020..213112, 213506..213798)) /locus_tag="TCM_011961" /product="Formin 8, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014022" /inference="similar to AA sequence:Phytozome:POPTR_0015s08120.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g55t2" CDS complement(join(210575..211898,212020..213086)) /locus_tag="TCM_011961" /codon_start=1 /product="Formin 8, putative" /protein_id="EOY20575.1" /db_xref="Phytozome:POPTR_0015s08120.1" /db_xref="TAIR:AT1G70140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEK7" /translation="MMVQPWLLPCAIFFFLFSSSYVVALSSRHQLFPHFTKVQFISES SPPPTSMVQSLAMPPALPSSSSSSKGKVVKIIVATAATTLFIALVVFFFLKKFTRCCR KGKYESSFRREAVVIPDEFKKYGGKVKGLIVDENGTDVLCMTKLDRKLKSNFPKVMFN PSYEEDEEEKRIVTTPERSNKSKPQEDFLFLGVPSDVINDPNEEKPILQTPTLLPPVS TTLPPTRDLHPAPPAAMISTKQTTAPPPPPPSIKKAPPPPPPPPPHPLLTPPAPPKLA KKNPAAPPPPPKAGVSASILKPPTAPRGTASNRNGASTSPENWKGAGFGQLKLRPLHW DKVIANSDHSMVWDQIKDGSLRFDDELIETLFGYTTSNRKSPDNNNISSNTSGSSSNT PAAQVFILEPRKSQNTAIVLKSLAISRKEVIDALREGQGLSSETLEKLTKIAPTREEE AKILQFNGNLVRLADAESFLYHVLKAVPSAFIRINAMLFRSNYDSEILNLKEYLQTLE LACKELRRRGLLLKLLEAILKAGNRMNAGTARGNALGFNLSALQKLSDVKSTDGKTTL LHFVVEQVARAEGRRHVINRNHSLGRSNSQRNNGDVNPDNLMPEEKDREYMMLGLPAL GALGSEFSHVKTAATIEYESFINICSNLTGRVAESRQLVTCCSNKEQTGFVMEMKGFL EDCEEELEVVREEQIRVMEIVKRTTEYYQAGASKERGANPLQLFVIVKDFLDMVDGVR ADITRKLQRTNVIHSAGSSPPPSPPRRTPLKLINFRSQFMSDMSRTSSSSESDDDF" gene complement(214952..217920) /locus_tag="TCM_011962" /note="dbxref CacaoGD:Thecc1EG011962" mRNA complement(join(214952..215505,216873..216943, 217070..217147,217382..217458,217559..217920)) /locus_tag="TCM_011962" /product="Two-component response regulator ARR5" /inference="alignment:exonerate- protein:2:ricco:30147.m014021" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010139t1" /inference="similar to AA sequence:ricco:30147.m014021" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03095t00001" CDS complement(join(215166..215505,216873..216943, 217070..217147,217382..217458,217559..217679)) /locus_tag="TCM_011962" /note="dbxref ricco:30147.m014021; paralog of Thecc1EG010139t1" /codon_start=1 /product="Two-component response regulator ARR5" /protein_id="EOY20576.1" /db_xref="TAIR:AT1G19050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q71BZ4" /translation="MATAAAVLPSGSQELHVLAVDDSHVDRKVIEKLLKISSCKVTAV ESGTRALQYLGLDGGKGSLGFNDLKVNLIMTDYSMPGMTGYELLKKIKQSSAFREIPV VIMSSENILTRIDRCLEEGAEEFLVKPVKLSDVKRLKDFIMRGETEENGGSRVNKRKL EDDGHPPLSSSSLSSSSSSASAPSSPSSPLSPPPSTSTVAPFACDLGTTELPTSLLHS SKRSKFCNSD" gene complement(218056..219286) /locus_tag="TCM_011963" /note="dbxref CacaoGD:Thecc1EG011963" mRNA complement(218056..219286) /locus_tag="TCM_011963" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS complement(218937..219191) /locus_tag="TCM_011963" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20577.1" /translation="MEAKGRLRKEKKIFQLFFFSLALLRWEMSHRMINAIEKKIMLSV YKTVRIGLAEMTRKYVTEGAGRQAAFFLLLTTPSVWAWEN" gene 220970..224816 /locus_tag="TCM_011964" /note="dbxref CacaoGD:Thecc1EG011964" mRNA join(220970..221789,222354..222405,223045..223128, 223327..223391,223540..223698,223817..224816) /locus_tag="TCM_011964" /product="Arginine/serine-rich coiled coil protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014020" /inference="similar to AA sequence:Phytozome:GSVIVT01007834001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g7906t1" CDS join(221163..221789,222354..222405,223045..223128, 223327..223391,223540..223698,223817..223867) /locus_tag="TCM_011964" /codon_start=1 /product="Arginine/serine-rich coiled coil protein" /protein_id="EOY20578.1" /db_xref="Phytozome:GSVIVT01007834001" /db_xref="TAIR:AT3G48120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NQC3" /translation="MEEEKAVAYYEELTRKGEGAARFKRGLGFSSNDDQHDAVPQRSS AFVSSSSSSSFLSSFVRASSPATASKLEKESQLQSIQNKLKKKPEREARVSERSSGER ERERDRGKDRHSRRRSRSRSRSRERYRERDRERRRRRSRSRSPRRDRRRSRSRSPRRD RSSGRRRSRSLSPRERRRSERDGERVGNSKKERNGAVDYSQLIEGYDKMSPAERVKAK MKLQLAETAEKDPAKGPGWERFEFDRDAPLDDEEIEVAEDDAALVKHIGQSFRFSAIK ARREEQIKAAHDEAIFGASTVSLSITADSEPEEENHKKNSNDNGLAISLLSEKVLAKQ PGSWRDRVRKA" gene 225258..227252 /locus_tag="TCM_011965" /note="dbxref CacaoGD:Thecc1EG011965" mRNA join(225258..225637,225773..225861,226514..227252) /locus_tag="TCM_011965" /product="B12D protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g34840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010755t1" /inference="similar to AA sequence:Phytozome:Glyma04g34840.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g16303t00001" CDS join(225611..225637,225773..225861,226514..226661) /locus_tag="TCM_011965" /note="paralog of Thecc1EG010755t1" /codon_start=1 /product="B12D protein" /protein_id="EOY20579.1" /db_xref="Phytozome:Glyma04g34840.1" /db_xref="TAIR:AT3G48140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PCV0" /translation="MANRWLRPEVYPLFAAVSVAVGICGLQLVRNICINPEVRVNKEN RAAGVLDNFAEGEKYAEHFVRKYVRNRAPEIMPSINSFFTDPK" gene complement(227338..231348) /locus_tag="TCM_011966" /note="dbxref CacaoGD:Thecc1EG011966" mRNA complement(join(227338..228070,228186..229436, 230442..230748,231146..231348)) /locus_tag="TCM_011966" /product="Anaphase-promoting complex subunit 8" /inference="alignment:exonerate- protein:2:ricco:30147.m014018" /inference="similar to AA sequence:ricco:30147.m014018" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05036t00001" CDS complement(join(227981..228070,228186..229436, 230442..230748,231146..231231)) /locus_tag="TCM_011966" /note="dbxref ricco:30147.m014018" /codon_start=1 /product="Anaphase-promoting complex subunit 8" /protein_id="EOY20580.1" /db_xref="TAIR:AT3G48150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STS3" /translation="MSSKESCRNELRTAIRQLSDRCLYSASKWAAEQLVGIEQDPAKF TPSNTRFQRGSSSIRRRFRTNEITSTPPTGVAYVSTPVMEEDEVIHGDFYLLAKSYFD CREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDTVNRELVS LERELSTLCKNNMIDPFGLYLYGLVLKEKGNENLARKVLVESVNSYPWNWSAWSELQS LCTTVDLLNSLNLSNHWMKEFFLASVYQELRMHNESLVKYENLQGNFTFSNYIQAQIA KARYSLREFEQVEVIFEDLLRNDPYRVEDMDTYSNVLYTKECFSALSYLAHRVIMTDK YRPESCCIIGNYYSLKGQHEKSVMYFRRALKLNKNYLSAWTLMGHEYVEMKNTPAAVD AYRRAVDINPRDYRAWYGLGQAYEMMGMPHYALHYFRKSVFFQPIDSRLWIAMAQCYE SEQLHMLEEAIKCYKRAANCNDTEAIALHRLAKLHRELGHPEEAAFYYKKDLERMEAE DREGPNIVEALMFLATHYKAQKRFEEAEVYCTRLLDYTGPERETAKNLLRGMRIAQSS FPSMDVEHFHP" gene 231543..234175 /locus_tag="TCM_011967" /note="dbxref CacaoGD:Thecc1EG011967" mRNA join(231543..232878,232965..233749,233863..234175) /locus_tag="TCM_011967" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007832001" /inference="similar to AA sequence:Phytozome:POPTR_0015s08150.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b011544t1a3; alternateUTRof:Thecc1EG011967t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g65t2" mRNA join(231543..232878,232965..233540,233626..233749, 233863..234175) /locus_tag="TCM_011967" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007832001" /inference="similar to AA sequence:Phytozome:POPTR_0015s08150.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b011544t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g65t2" mRNA join(231543..233540,233626..233749,233863..234170) /locus_tag="TCM_011967" /product="Pentatricopeptide repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007832001" /inference="similar to AA sequence:Phytozome:POPTR_0015s08150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g65t2" mRNA join(231546..233749,233863..234175) /locus_tag="TCM_011967" /product="Pentatricopeptide repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007832001" /inference="similar to AA sequence:Phytozome:POPTR_0015s08150.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g65t1; alternateUTRof:Thecc1EG011967t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g65t2" CDS 231648..233123 /locus_tag="TCM_011967" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein isoform 1" /protein_id="EOY20581.1" /db_xref="Phytozome:POPTR_0015s08150.1" /db_xref="TAIR:AT1G74900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEL1" /translation="MFSLLSKLTPPLSKTALHLPKSFSTTTPQPQNTTSAAAILTGLI LTSTNPKSLTQSLLSPSINWTPLLVDTILKQLWNHGPKALQFFHLLLHNHPTYIHSVS SFDHAIDIAARLRHYATVFTLLHRMRSLRLHPTPKTFAIIAERYVAAGKPDKALKIFL SMHEHGCFQDLHSFNTILDVLCKAKRVEKACNFFKVLRGKFKADVISYNIIANGWCLI KRTNMALETLKEMVEKGLTPNLTTYNIMLKGYFRAGQIEEGWKFFLEMKKRKCEIDVV TYTTVVHGLGVAGEIKRARKVFDEMVREGVLPSVATYNALIQVLCKKDCVENAILVFE EMLRKGYVPNSTTYNVVIRGLCHKEQMDRAIEFMDKMRDDECGPNVQTYNIVIRYFCD AGEIEKGLELFQKMSCGDCLPNLDTYNILIGAMFVRKKPDDLVVAGKLLIEMVDRGFM PRRLTFNRVLDGLLLTGNQGFAKGILRLQSRCGRLPRQFKL" CDS 231648..233123 /locus_tag="TCM_011967" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein isoform 1" /protein_id="EOY20584.1" /db_xref="Phytozome:POPTR_0015s08150.1" /db_xref="TAIR:AT1G74900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEL1" /translation="MFSLLSKLTPPLSKTALHLPKSFSTTTPQPQNTTSAAAILTGLI LTSTNPKSLTQSLLSPSINWTPLLVDTILKQLWNHGPKALQFFHLLLHNHPTYIHSVS SFDHAIDIAARLRHYATVFTLLHRMRSLRLHPTPKTFAIIAERYVAAGKPDKALKIFL SMHEHGCFQDLHSFNTILDVLCKAKRVEKACNFFKVLRGKFKADVISYNIIANGWCLI KRTNMALETLKEMVEKGLTPNLTTYNIMLKGYFRAGQIEEGWKFFLEMKKRKCEIDVV TYTTVVHGLGVAGEIKRARKVFDEMVREGVLPSVATYNALIQVLCKKDCVENAILVFE EMLRKGYVPNSTTYNVVIRGLCHKEQMDRAIEFMDKMRDDECGPNVQTYNIVIRYFCD AGEIEKGLELFQKMSCGDCLPNLDTYNILIGAMFVRKKPDDLVVAGKLLIEMVDRGFM PRRLTFNRVLDGLLLTGNQGFAKGILRLQSRCGRLPRQFKL" CDS join(231648..232878,232965..232975) /locus_tag="TCM_011967" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /protein_id="EOY20582.1" /db_xref="Phytozome:POPTR_0015s08150.1" /db_xref="TAIR:AT1G74900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEL1" /translation="MFSLLSKLTPPLSKTALHLPKSFSTTTPQPQNTTSAAAILTGLI LTSTNPKSLTQSLLSPSINWTPLLVDTILKQLWNHGPKALQFFHLLLHNHPTYIHSVS SFDHAIDIAARLRHYATVFTLLHRMRSLRLHPTPKTFAIIAERYVAAGKPDKALKIFL SMHEHGCFQDLHSFNTILDVLCKAKRVEKACNFFKVLRGKFKADVISYNIIANGWCLI KRTNMALETLKEMVEKGLTPNLTTYNIMLKGYFRAGQIEEGWKFFLEMKKRKCEIDVV TYTTVVHGLGVAGEIKRARKVFDEMVREGVLPSVATYNALIQVLCKKDCVENAILVFE EMLRKGYVPNSTTYNVVIRGLCHKEQMDRAIEFMDKMRDDECGPNVQTYNIVIRYFCD AGEIEKGLELFQKMSCGDFVN" CDS join(231648..232878,232965..232975) /locus_tag="TCM_011967" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /protein_id="EOY20583.1" /db_xref="Phytozome:POPTR_0015s08150.1" /db_xref="TAIR:AT1G74900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEL1" /translation="MFSLLSKLTPPLSKTALHLPKSFSTTTPQPQNTTSAAAILTGLI LTSTNPKSLTQSLLSPSINWTPLLVDTILKQLWNHGPKALQFFHLLLHNHPTYIHSVS SFDHAIDIAARLRHYATVFTLLHRMRSLRLHPTPKTFAIIAERYVAAGKPDKALKIFL SMHEHGCFQDLHSFNTILDVLCKAKRVEKACNFFKVLRGKFKADVISYNIIANGWCLI KRTNMALETLKEMVEKGLTPNLTTYNIMLKGYFRAGQIEEGWKFFLEMKKRKCEIDVV TYTTVVHGLGVAGEIKRARKVFDEMVREGVLPSVATYNALIQVLCKKDCVENAILVFE EMLRKGYVPNSTTYNVVIRGLCHKEQMDRAIEFMDKMRDDECGPNVQTYNIVIRYFCD AGEIEKGLELFQKMSCGDFVN" gene 234223..248345 /locus_tag="TCM_011968" /note="dbxref CacaoGD:Thecc1EG011968" mRNA join(234223..234524,235273..235622,235739..235881, 237795..237875,237961..238109,238554..238646, 238788..238911,239042..239107,239224..239290, 239467..239543,240077..240190,240559..240636, 240720..240871,241030..241090,241200..241306, 241511..241597,242250..242401,242523..242665, 243243..243323,243401..243549,244093..244185, 244337..244460,244607..244672,244754..244820, 245899..245999,246540..246617,246700..246851, 247048..247108,247210..247316,247490..247636, 247789..247917,248039..248345) /locus_tag="TCM_011968" /product="Betaine aldehyde dehydrogenase 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014013" /inference="similar to AA sequence:Phytozome:POPTR_0015s08190.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1649t3" CDS join(235514..235622,235739..235881,237795..237875, 237961..238109,238554..238646,238788..238911, 239042..239107,239224..239290,239467..239543, 240077..240190,240559..240636,240720..240871, 241030..241090,241200..241306,241511..241597, 242250..242401,242523..242665,243243..243323, 243401..243549,244093..244185,244337..244460, 244607..244672,244754..244820,245899..245999, 246540..246617,246700..246851,247048..247108, 247210..247316,247490..247604) /locus_tag="TCM_011968" /codon_start=1 /product="Betaine aldehyde dehydrogenase 1" /protein_id="EOY20585.1" /db_xref="Phytozome:POPTR_0015s08190.1" /db_xref="TAIR:AT1G74920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S795" /translation="MAVQIPSRQLLIDGEWREPLLKKRIPVINPATEQIIGDIPAATA EDVDLAVAAARRALSRNKGKDWALASGAVRAKYLRAIAAKITERKSELAKLEAIDCGK PLDEAAWDMDDVAGCFEYYADLAEGLDAKQKAPVSLPMGTFKSYVLKEPIGVVGLITP WNYPLLMAVWKVAPALAAGCAAILKPSELASLTCLELAEVCRDVGLPPGVLNILTGLG PEAGAPLASHPNVDKIAFTGSTATGSKIMAAAAQMVKPVSLELGGKSPIVVFEDVDLD KAAEWTAFGVFWTNGQICSATSRLIVHESIAKEFLDRLVKWTKNIKISDPLEEGCRLG PVVSGGQYEKVLNFISTATSEGATILCGGVRPEHLKKGFFVEPTIITDVTTSMQIWRE EVFGPVLCVKTFSTEEEALDLANDTHYGLGAAVISNDLERCDRVSKALQAGIVWINCS QPCFCQAPWGGNKRSGYGRELGEWGLENYLSVKQVTQYVSDEPWGWYRSPSKLTLLTL LKEKSEQKMAIIPIPSRQLFIDGEWREPLLKKRIPIINPTTEQIIGDIPAATAEDVEV AVEAARRALSRNEGKDWALASAAVRAKYLRAIASKIKERKSELAKLETIDCGKPLGEA EGDMEDVAGCFEYYADLAESLDAKQKAPVSLPMKTFKSYVIKEPIGVVGLIIPWNHPL LMAAWKVAPALAAGCAAILKPSELASVTCLELAEVCRDVDLPAGVLNILNGLGPETGA PLASHPHVDKIAFTGSTATGVKIMTAASQMVKPVSLELGGKSPVVVFEDVDIDKAEFL DRLVKWSENIKISDPLEEGCKLGPIVSRGQYEKVLKFISTAKSEGATIFYGGARPEHL KKGFFIEPTIITDVKTSMQIWREEVFGPVLSVKTFSTEDEAIELANDTHYGLGAAVIS KDLGRCDRLSKVVQAGTVWINCSQPCFFQTAFGGIKWSGFGRELGEWGLENYLNVKQV TQYVCDEPWGWYQSPKQRSCPWKYKY" gene 244886..245968 /locus_tag="TCM_011969" /note="dbxref CacaoGD:Thecc1EG011969" mRNA join(244886..245553,245886..245968) /locus_tag="TCM_011969" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc53t34" CDS 244953..245150 /locus_tag="TCM_011969" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20586.1" /translation="MFMLLLIYLPVLLLAVEWTLYGCFYTNGQICSATSRLIVHELIG FLPFIELSISFFYHFTCGMRL" gene 248549..253588 /locus_tag="TCM_011970" /note="dbxref CacaoGD:Thecc1EG011970" mRNA join(248549..249113,249431..249528,249622..249722, 249856..249934,250111..250171,250392..250438, 250548..250640,250754..250844,251125..251173, 251783..251899,252125..252272,252428..252520, 252632..252700,253011..253053,253148..253588) /locus_tag="TCM_011970" /product="ADP-glucose pyrophosphorylase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017958t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400042547" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1752t1" mRNA join(248753..249113,249431..249528,249622..249650, 250110..250171,250392..250438,250548..250640, 250754..250844,251125..251173,251783..251899, 252125..252272,252428..252520,252632..252700, 253011..253053,253148..253356) /locus_tag="TCM_011970" /product="ADP-glucose pyrophosphorylase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017958t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400042547" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc115t27; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1752t1" mRNA join(248965..249113,249431..249528,249622..249722, 249856..249934,250111..250171,250392..250438, 250548..250640,250754..250844,251125..251173, 251783..251899,252125..252272,252428..252520, 252632..252700,253011..253053,253148..253576) /locus_tag="TCM_011970" /product="ADP-glucose pyrophosphorylase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017958t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400042547" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05474t00001; alternateUTRof:Thecc1EG011970t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1752t1" mRNA join(249031..249113,249431..249528,249622..249650, 250110..250171,250392..250438,250548..250640, 250754..250844,251125..251173,251783..251899, 252125..252272,252428..252520,252632..252700, 253011..253053,253148..253356) /locus_tag="TCM_011970" /product="ADP-glucose pyrophosphorylase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017958t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400042547" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc115t30_C1; alternateUTRof:Thecc1EG011970t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1752t1" CDS join(249056..249113,249431..249528,249622..249722, 249856..249934,250111..250171,250392..250438, 250548..250640,250754..250844,251125..251173, 251783..251899,252125..252272,252428..252520, 252632..252700,253011..253053,253148..253248) /locus_tag="TCM_011970" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017958t2" /codon_start=1 /product="ADP-glucose pyrophosphorylase family protein isoform 1" /protein_id="EOY20587.1" /db_xref="Phytozome:PGSC0003DMP400042547" /db_xref="TAIR:AT1G74910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9P3" /translation="MGSSDEKVVAVIMVGGPTKGTRFRPLSLNVPKPLFPLAGQPMAH HPISACKRIPNLAQIYLVGFYEEREFAMYVSSISNELRVPVRYLREDKPHGSAGGLYN FRDLIMEDNPSHIFLLNCDVCCSFPLPEMLEAHKRYGGMGTILVIKVSAESASQFGEL VADPVTKELLHYTEKPETFVSDHINCGVYVFTPDIFTAIQGVSSQRKDRANLRRLSSF EALQSATRSPPSDFVRLDQDILTPFAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLS QFRFTSPNLLASGDGTKSATIIGDVYIHPSAKVHPSAKVGPNVSISANARIGAGVRLI SCIILDGVEIMENAVVAHAIVGWKSSIGKWSRVQAEGDYNAKLGITILGEAVGVEDEV VVTNSIVLPNKTLNVSVQDEILL" CDS join(249056..249113,249431..249528,249622..249722, 249856..249934,250111..250171,250392..250438, 250548..250640,250754..250844,251125..251173, 251783..251899,252125..252272,252428..252520, 252632..252700,253011..253053,253148..253248) /locus_tag="TCM_011970" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017958t2" /codon_start=1 /product="ADP-glucose pyrophosphorylase family protein isoform 1" /protein_id="EOY20588.1" /db_xref="Phytozome:PGSC0003DMP400042547" /db_xref="TAIR:AT1G74910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9P3" /translation="MGSSDEKVVAVIMVGGPTKGTRFRPLSLNVPKPLFPLAGQPMAH HPISACKRIPNLAQIYLVGFYEEREFAMYVSSISNELRVPVRYLREDKPHGSAGGLYN FRDLIMEDNPSHIFLLNCDVCCSFPLPEMLEAHKRYGGMGTILVIKVSAESASQFGEL VADPVTKELLHYTEKPETFVSDHINCGVYVFTPDIFTAIQGVSSQRKDRANLRRLSSF EALQSATRSPPSDFVRLDQDILTPFAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLS QFRFTSPNLLASGDGTKSATIIGDVYIHPSAKVHPSAKVGPNVSISANARIGAGVRLI SCIILDGVEIMENAVVAHAIVGWKSSIGKWSRVQAEGDYNAKLGITILGEAVGVEDEV VVTNSIVLPNKTLNVSVQDEILL" CDS join(249056..249113,249431..249528,249622..249650, 250110..250171,250392..250438,250548..250640, 250754..250844,251125..251173,251783..251899, 252125..252272,252428..252520,252632..252700, 253011..253053,253148..253248) /locus_tag="TCM_011970" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG017958t2" /codon_start=1 /product="ADP-glucose pyrophosphorylase family protein isoform 3" /protein_id="EOY20589.1" /db_xref="Phytozome:PGSC0003DMP400042547" /db_xref="TAIR:AT1G74910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9P3" /translation="MGSSDEKVVAVIMVGGPTKGTRFRPLSLNVPKPLFPLAGQPMAH HPISACKRIPNLAQIYLVSHIFLLNCDVCCSFPLPEMLEAHKRYGGMGTILVIKVSAE SASQFGELVADPVTKELLHYTEKPETFVSDHINCGVYVFTPDIFTAIQGVSSQRKDRA NLRRLSSFEALQSATRSPPSDFVRLDQDILTPFAGKKQLYTYETMDFWEQIKTPGMSL KCSGLYLSQFRFTSPNLLASGDGTKSATIIGDVYIHPSAKVHPSAKVGPNVSISANAR IGAGVRLISCIILDGVEIMENAVVAHAIVGWKSSIGKWSRVQAEGDYNAKLGITILGE AVGVEDEVVVTNSIVLPNKTLNVSVQDEILL" CDS join(249056..249113,249431..249528,249622..249650, 250110..250171,250392..250438,250548..250640, 250754..250844,251125..251173,251783..251899, 252125..252272,252428..252520,252632..252700, 253011..253053,253148..253248) /locus_tag="TCM_011970" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG017958t2" /codon_start=1 /product="ADP-glucose pyrophosphorylase family protein isoform 3" /protein_id="EOY20590.1" /db_xref="Phytozome:PGSC0003DMP400042547" /db_xref="TAIR:AT1G74910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9P3" /translation="MGSSDEKVVAVIMVGGPTKGTRFRPLSLNVPKPLFPLAGQPMAH HPISACKRIPNLAQIYLVSHIFLLNCDVCCSFPLPEMLEAHKRYGGMGTILVIKVSAE SASQFGELVADPVTKELLHYTEKPETFVSDHINCGVYVFTPDIFTAIQGVSSQRKDRA NLRRLSSFEALQSATRSPPSDFVRLDQDILTPFAGKKQLYTYETMDFWEQIKTPGMSL KCSGLYLSQFRFTSPNLLASGDGTKSATIIGDVYIHPSAKVHPSAKVGPNVSISANAR IGAGVRLISCIILDGVEIMENAVVAHAIVGWKSSIGKWSRVQAEGDYNAKLGITILGE AVGVEDEVVVTNSIVLPNKTLNVSVQDEILL" gene complement(253333..266016) /locus_tag="TCM_011971" /note="dbxref CacaoGD:Thecc1EG011971" mRNA complement(join(253333..253358,253506..254075, 254526..254928,255061..255122,255222..255294, 255396..255463,255677..255797,255884..255937, 256047..256124,265611..265663,265757..>265823)) /locus_tag="TCM_011971" /product="DP-E2F-like 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014015" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017926t1" /inference="similar to AA sequence:ricco:30147.m014015" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc90t48; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc90t48; inference alignment:Newbler:10:TSA:cgbaP2_g01856t00001" mRNA complement(join(253705..254075,254526..254928, 255061..255122,255222..255294,255396..255463, 255677..255797,255884..255937,256047..256124, 256208..256260,256356..256423,256505..256798)) /locus_tag="TCM_011971" /product="DP-E2F-like 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014015" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017926t1" /inference="similar to AA sequence:ricco:30147.m014015" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1754t2" mRNA complement(join(253789..254054,254534..254928, 255061..255122,255222..255294,255396..255463, 255677..255797,255884..255937,256047..256124, 265611..265663,265757..265824,265905..266016)) /locus_tag="TCM_011971" /product="DP-E2F-like 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014015" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017926t1" /inference="similar to AA sequence:ricco:30147.m014015" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01856t00001; inference alignment:Newbler:10:TSA:cgbaP2_g01856t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc90t48" CDS complement(join(253967..254054,254534..254928, 255061..255122,255222..255294,255396..255463, 255677..255797,255884..255937,256047..256124, 265611..265663,265757..265824,265905..265999)) /locus_tag="TCM_011971" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014015; paralog of Thecc1EG017926t1" /codon_start=1 /product="DP-E2F-like 1 isoform 3" /protein_id="EOY20593.1" /db_xref="TAIR:AT3G48160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LSZ4" /translation="MPVSSSPSLPESSSRHYTYSRKQKSLGLLCSNFLSLYNREDVEL IGLDEAAAKLGVERHRIYDIVNVLESVGVLTRKAKNKYTWKGFAAIPKALQDLKEEGF SSNFKNLDANNNAKVSDDDDDDEDDEGFSNPNTGSQTETSKPTSVLKSSASSKIDNRR EKSLGLLTQNFVKLFVCSNAELISLDEAARLLLGNAHNTSIMRTKVRRLYDIANVLSS MNLIEKTHTVDTRKPAFRWLGLSGKSDKGSADALVLHESRKRAFGTDVTNIISKRNKV DSSNEGNVKQCMKMQKQIKVENLVAVADRRSWEDSKQGSKSYQFGPFAPVNLSRSGNS ENNVKRVHDWESLASTYRPQYQLHGSVEIMVHGSCWEEANTTNFLMRQAE" CDS complement(join(253984..254075,254526..254928, 255061..255122,255222..255294,255396..255463, 255677..255797,255884..255937,256047..256124, 265611..265663,265757..>265823)) /locus_tag="TCM_011971" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014015; paralog of Thecc1EG017926t1" /codon_start=1 /product="DP-E2F-like 1 isoform 2" /protein_id="EOY20592.1" /db_xref="TAIR:AT3G48160.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LSZ4" /translation="FLSLYNREDVELIGLDEAAAKLGVERHRIYDIVNVLESVGVLTR KAKNKYTWKGFAAIPKALQDLKEEGFSSNFKNLDANNNAKVSDDDDDDEDDEGFSNPN TGSQTETSKPTSVLKSSASSKIDNRREKSLGLLTQNFVKLFVCSNAELISLDEAARLL LGNAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTVDTRKPAFRWLGLSGKSDKGSAD ALVLHESRKRAFGTDVTNIISKRNKVDSSNEGNVKQCMKMQKQIKVENLVAVADRRSW EDSKQGSKSYQFGPFAPVNLSRSGNSENNVKRVHDWESLASTYRPQYHNQALRDLFSH YMEAWKSWYTEVAGKKPIQQIS" CDS complement(join(253984..254075,254526..254928, 255061..255122,255222..255294,255396..255463, 255677..255797,255884..255937,256047..256124, 256208..256260,256356..256423,256505..256599)) /locus_tag="TCM_011971" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014015; paralog of Thecc1EG017926t1" /codon_start=1 /product="DP-E2F-like 1 isoform 1" /protein_id="EOY20591.1" /db_xref="TAIR:AT3G48160.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LSZ4" /translation="MPVSSSSSLPESSSRHYTYSRKQKSLGLLCSNFLSLYNREDVEL IGLDEAAAKLGVERRRIYDIVNVLESVGVLTRKAKNKYTWKGFAAIPKALQDLKEEGF SSNFKNLDANNNAKVSDDDDDDEDDEGFSNPNTGSQTETSKPTSVLKSSASSKIDNRR EKSLGLLTQNFVKLFVCSNAELISLDEAARLLLGNAHNTSIMRTKVRRLYDIANVLSS MNLIEKTHTVDTRKPAFRWLGLSGKSDKGSADALVLHESRKRAFGTDVTNIISKRNKV DSSNEGNVKQCMKMQKQIKVENLVAVADRRSWEDSKQGSKSYQFGPFAPVNLSRSGNS ENNVKRVHDWESLASTYRPQYHNQALRDLFSHYMEAWKSWYTEVAGKKPIQQIS" mobile_element 257610..260264 /note="source:CACAO_M_E12107_F345_scaffold_3 1 2655" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(260105..261816) /locus_tag="TCM_011972" /note="dbxref CacaoGD:Thecc1EG011972" mRNA complement(260105..261816) /locus_tag="TCM_011972" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046332t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400016871" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(260539..261678) /locus_tag="TCM_011972" /note="paralog of Thecc1EG046332t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20594.1" /db_xref="Phytozome:PGSC0003DMP400016871" /translation="MKAELLESFASWSNIIGDILRCIVDKIHSIQDRARMGVVCRSWH ALLKDEKIDFPICLMLAAKENSDRRCFNIDAKKIILELDLPEIRERRCWGTPFGWLVT LGLDGEIRLFNPLSRASLSLPSMHTFNHIACYTPEYSRLYLIDKVLLSSSPTSPDAII MIIWGFGMYADKTLAFAKPDDQEWTQIFCDYALADVICFNGNFFAACVEGRLFICEDL NRPSPKIVEFAPPPTIHRGHKKYIVDLSGDLCMITRDVHRYELSYDNGRVEDANLTEG FEVFKLDLHTKNWEKILSLNGHSVFLGNCCTFSVLPTDHPSCKSNCIYFTDDDNRFYP EASASDIGIYNCNNKAVEYIEDDDDEVPDLRSPFSPPLWIKLCLH" gene complement(264263..266205) /locus_tag="TCM_011973" /note="dbxref CacaoGD:Thecc1EG011973" mRNA complement(join(264263..264351,264428..264669, 265465..265480,265611..265663,265757..265824, 265905..266205)) /locus_tag="TCM_011973" /product="DP-E2F-like 1" /inference="similar to AA sequence:ricco:30147.m014015" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1766t2" CDS complement(join(264283..264351,264428..264669, 265465..265480,265611..265663,265757..265824, 265905..265999)) /locus_tag="TCM_011973" /note="dbxref ricco:30147.m014015" /codon_start=1 /product="DP-E2F-like 1" /protein_id="EOY20595.1" /db_xref="TAIR:AT3G48160.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q654W1" /translation="MPVSSSPSLPESSSRHYTYSRKQKSLGLLCSNFLSLYNREDVEL IGLDEAAAKLGVERHRIYDIVNVLESVGLAWLLETQDHFLSNLMGRKKNKPEQIFFCN ICEKMIKDLSGFTAHIKDRHKKSRSCRKCNMIFTSDVDLLIHSDAKECYDYLKRIELL SQDEIKTEDLESSLEEVGEK" gene complement(267373..>268112) /locus_tag="TCM_011974" /note="dbxref CacaoGD:Thecc1EG011974" mRNA complement(267373..>268112) /locus_tag="TCM_011974" /product="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014012" /inference="similar to AA sequence:Phytozome:POPTR_0012s07750.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g99t1" CDS complement(267670..>268110) /locus_tag="TCM_011974" /codon_start=1 /product="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative" /protein_id="EOY20596.1" /db_xref="Phytozome:POPTR_0012s07750.1" /translation="PNLGIRPTVSYLSYFPSNTQSPSLSSSLNVILHLLLQAIFLICS KLKTPSHAFSIKQQEEGNAMEGNNSSYGTSWADQWDYSDPTPVSTTQNKNTKSSTAKY KQKVGEGLGKTKAVASTGVKKVKEGTSLGIHWIKEKYHKTTQKH" mobile_element complement(269078..270551) /note="source:CACAO_M_E50575_F144_scaffold_7 1163 2688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 270552..271909 /note="source:CACAO_M_E12108_F15_scaffold_3 1 1358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 272388..273402 /note="source:CACAO_M_E12108_F15_scaffold_3 1359 2373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(273403..274562) /note="source:CACAO_M_S_E18399_F231_scaffold_3 7872 9035" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(276505..288948) /locus_tag="TCM_011976" /note="dbxref CacaoGD:Thecc1EG011976" mRNA complement(join(276505..277587,277710..277788, 277875..278112,278277..278509,278902..279012, 279416..279514,279849..279951,280711..280796, 281560..281607,281846..281963,282463..282493, 282650..282756,283139..283220,283793..283887, 284195..284280,285181..285302,285421..285632, 288287..288363,288494..288948)) /locus_tag="TCM_011976" /product="Alpha-N-acetylglucosaminidase family / NAGLU family isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014011" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005845t1" /inference="similar to AA sequence:ricco:30147.m014011" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1815t3" mRNA complement(join(277123..277587,277710..277788, 277875..278112,278277..278509,278902..279012, 279416..279514,279849..279951,280687..280796, 281560..281607,281846..281963,282463..282493, 282650..282756,283139..283220,283793..283887, 284195..284280,285181..285208)) /locus_tag="TCM_011976" /product="Alpha-N-acetylglucosaminidase family / NAGLU family isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014011" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005845t2" /inference="similar to AA sequence:ricco:30147.m014011" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc299t7; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1815t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g104t2" CDS complement(join(277340..277587,277710..277788, 277875..278112,278277..278509,278902..279012, 279416..279514,279849..279951,280711..280796, 281560..281607,281846..281963,282463..282493, 282650..282756,283139..283220,283793..283887, 284195..284280,285181..285302,285421..285632, 288287..288363,288494..288715)) /locus_tag="TCM_011976" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014011; paralog of Thecc1EG005845t1" /codon_start=1 /product="Alpha-N-acetylglucosaminidase family / NAGLU family isoform 1" /protein_id="EOY20597.1" /db_xref="TAIR:AT5G13690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSV4" /translation="MDTPLPAIFLLFLFSLLSSTHSSTIGVQYVSKLLEIQDHERAPP SLQVAAARAVLHRLLPSHSSAFEFRIISSKEECGGGSCFIIKNHPASHKHGAPEILIS GVTGVEVLAGLHWYLKYLCGSHISWEKTGGAQLSSIPKLGSLPRVQDTGILVQRPIPW NYYQNAVTSSYSFAWWDWERWEKEIDWMALQGINLPLAFTGQEAIWQKVYQKFNISKS DLDDFFGGPAFLAWSRMGNLHGWGGPLPQSWFNGQLTLQKKILSRMYELGMTPVLPAF SGNVPAALKNIFPSAKITRLGNWFSVKGNPKWCCTYLLDATDPLFIEIGKAFIKEQLK EYGKTSHIYNCDTFDENTPPMDDPEYITSLGVAIFSGMQSGDVNAMWLMQGWLFSYDP FWRPPQMKALLHSVPLGKLVVLDLFAEVKPIWITSEQCMLHNFAGNIEMYGYLDAIAS GPIEALTSENSTMVGIGMSMEGIEQNPIVYDLMSEMAFQHKKVDVEAWIELYIARRYG QSIPSISDAWSILYRTLYNCTDGAYDKNRDVIVAFPDVSPSFISLPRERYHHYGKPTS RRAVLSEKTDAYDQPHLWYSTSEVIRALELFITSGDALSASNTYRYDLVDLTRQALAK YANELFLEIIDAYELKDVNRVTTLSQKFLELVEDMDTLLACHDGFLLGPWLESAKQLA QNKEEEKQFEWNARTQITMWFDNTKEEASLLRDYGNKYWSGVVGDYYGPRATIYFKVL IESLENGEDFKVKKWRGEWIKLTNDWQTSRKVYPVESNGNALTISRWLYNKYLRSESS " CDS complement(join(277340..277587,277710..277788, 277875..278112,278277..278509,278902..279012, 279416..279514,279849..279951,280687..280796, 281560..281607,281846..281963,282463..282493, 282650..282756,283139..283220,283793..283887, 284195..284211)) /locus_tag="TCM_011976" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014011; paralog of Thecc1EG005845t2" /codon_start=1 /product="Alpha-N-acetylglucosaminidase family / NAGLU family isoform 2" /protein_id="EOY20598.1" /db_xref="TAIR:AT5G13690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSV4" /translation="MGNLHGWGGPLPQSWFNGQLTLQKKILSRMYELGMTPVLPAFSG NVPAALKNIFPSAKITRLGNWFSVKGNPKWCCTYLLDATDPLFIEIGKAFIKEQLKEY GKTSHIYNCDTFDENTPPMDDPEYITSLGVAIFSGMQSGDVNAMWLMQGWLFSYDPFW RPPQMKALLHSVPLGKLVVLDLFAEVKPIWITSEQFYGVPYIWCMLHNFAGNIEMYGY LDAIASGPIEALTSENSTMVGIGMSMEGIEQNPIVYDLMSEMAFQHKKVDVEAWIELY IARRYGQSIPSISDAWSILYRTLYNCTDGAYDKNRDVIVAFPDVSPSFISLPRERYHH YGKPTSRRAVLSEKTDAYDQPHLWYSTSEVIRALELFITSGDALSASNTYRYDLVDLT RQALAKYANELFLEIIDAYELKDVNRVTTLSQKFLELVEDMDTLLACHDGFLLGPWLE SAKQLAQNKEEEKQFEWNARTQITMWFDNTKEEASLLRDYGNKYWSGVVGDYYGPRAT IYFKVLIESLENGEDFKVKKWRGEWIKLTNDWQTSRKVYPVESNGNALTISRWLYNKY LRSESS" gene complement(289325..289629) /locus_tag="TCM_011977" /note="dbxref CacaoGD:Thecc1EG011977" mRNA complement(289325..289629) /locus_tag="TCM_011977" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014012.2" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g99t2" CDS complement(289331..289594) /locus_tag="TCM_011977" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20599.1" /translation="MGRSVGLQRPNPCQHHSEQKHEEQHRKVQAEGRRRAWEDQSGGF DWGEEGQRRNLFGNSLDQRKVPQDHPETLGIGFTPAPHIPCYA" mobile_element complement(291158..292234) /note="source:CACAO_on_SS_E42_scaffold_2 20826 21891" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(292874..293514) /note="source:INTACT44_F119_scaffold_6-int 1 633" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(296813..299396) /locus_tag="TCM_011978" /note="dbxref CacaoGD:Thecc1EG011978" mRNA complement(join(296813..297290,297772..297941, 299235..299396)) /locus_tag="TCM_011978" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage" CDS complement(join(297086..297290,297772..297872)) /locus_tag="TCM_011978" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20600.1" /translation="MYRMINHLLDTYMRVVWSRITCVTRMEVLVGLHCDTFDVNTPLM DDLEYISSLGATIFSGMQSGDVYAMWLMQVKRFYLINFSIQTDEGSFFQDAYIFTNT" mobile_element 298121..298940 /note="source:scaffold_5_CACTA_0615 1365 2016" /mobile_element_type="transposon:TIR/CACTA" gene 303440..305309 /locus_tag="TCM_011979" /note="dbxref CacaoGD:Thecc1EG011979" mRNA 303440..305309 /locus_tag="TCM_011979" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g028360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010648t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08220.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g87t1" CDS 303523..304749 /locus_tag="TCM_011979" /note="paralog of Thecc1EG010648t1" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY20601.1" /db_xref="Phytozome:POPTR_0015s08220.1" /db_xref="TAIR:AT5G50120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG99" /translation="MSGQQFCYSNYDSQSQSSRFQSDSTSLWSQPSLPSVPSLTSQFH PQQYHLSNIRHHCLATLKGHTSYVSSLTFAGKFLYTGSSDKEIRLWKRNTTVDSEPDY DNLTNNNIIAVGKGAVKSLVVLADKLFSAHQDHKIRVWKISNEDPDNQKYTRLATLPT LSDRATKLLLPKNHVQVRRHKTCTWVHHVDTVSALALSRDETLLYSVSWDRTLKIWRT SDFKCLESVSNAHDDAINAVALSDDGDVYTGSTDKKIKVWRRSSGEKTHSLVATLEKH NSGINSLAISPDGSTLYSGASDRSIVVWEKDGGDGNGMTVVGALRGHTKPILCLAVVS DLVCSGSADKTIRIWRRGVDTSYSCWAILEGHQGPVKCLAGAVDRCNPSDTSYVIYSG SLDCDVKVWQIVVPFL" gene complement(305585..309740) /locus_tag="TCM_011980" /note="dbxref CacaoGD:Thecc1EG011980" mRNA complement(join(305585..306028,306738..306910, 307454..307508,307923..307989,308397..308464, 308591..308714,308806..308915,308995..309187, 309270..309740)) /locus_tag="TCM_011980" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07780.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07780.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02393t00001" mRNA complement(join(305697..306028,306824..306910, 307923..307989,308397..308464,308591..308669, 308806..308915,308995..309187,309270..309530)) /locus_tag="TCM_011980" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07780.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02393t00001; inference alignment:Newbler:10:TSA:cgbaB_g02393t00001" CDS complement(join(305934..306028,306824..306910, 307923..307989,308397..308464,308591..308669, 308806..308915,308995..309187,309270..309497)) /locus_tag="TCM_011980" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /protein_id="EOY20603.1" /db_xref="Phytozome:POPTR_0012s07780.1" /db_xref="TAIR:AT5G50110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGA0" /translation="MVVCRCKILNVPSSLGTLVKHLPLSKPKTSFPPPQTLSFNSQTS AAIRSSSSFETLTSRQKDQVRLYVDALLQWNQKMNLTAVKEVSEVMDRHIEDSLAIIP PIQNSYVSSCNDSFDNLRIVDVGTGAGLPGLVLAIACPGWAVTLVESVNKRCLFLEHV VNLTGLSNVQVVRERAENLGQDIGFREKFDVAVARAVAEMRVLAEYCLPLVRVGGLFV AAKGHDPKEEVRNAERAIKLLGASILQLRSVESHSPHGRRTAIICLKNHPTPRKYPRG PGKKCKGVHFPVKQLTWHRDMDNTVPQLGEGT" CDS complement(join(305934..306028,306738..306910, 307454..307508,307923..307989,308397..308464, 308591..308714,308806..308915,308995..309187, 309270..309497)) /locus_tag="TCM_011980" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY20602.1" /db_xref="Phytozome:POPTR_0012s07780.1" /db_xref="TAIR:AT5G50110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGA0" /translation="MVVCRCKILNVPSSLGTLVKHLPLSKPKTSFPPPQTLSFNSQTS AAIRSSSSFETLTSRQKDQVRLYVDALLQWNQKMNLTAVKEVSEVMDRHIEDSLAIIP PIQNSYVSSCNDSFDNLRIVDVGTGAGLPGLVLAIACPGWAVTLVESVNKRCLFLEHV VNLTGLSNVQVVRERAECIAQLYFLMTVVIGQNLGQDIGFREKFDVAVARAVAEMRVL AEYCLPLVRVGGLFVAAKGHDPKEEVRNAERAIKLLGASILQLRSGDAKIWCLCQDFG GGLSRCGITQPTWTENCYHLLKKSPHSKKISTWSRYTDKSATLIIRVSVLLSALLCNA SCTSKCKKCKGVHFPVKQLTWHRDMDNTVPQLGEGT" gene 306214..306912 /locus_tag="TCM_011981" /note="dbxref CacaoGD:Thecc1EG011981" mRNA 306214..306912 /locus_tag="TCM_011981" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc333t7" CDS 306292..306702 /locus_tag="TCM_011981" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20605.1" /translation="MFILYLFIILLKGSPQFIMDWDVTDKQFINKFLTGQHWSPPEFT FSTVGRYISFSKAISCSICIRNLSINLRTTSFCENQKEVSDLQSCQVRKSSPSIQNNK PNILRKLKLHIKYNSPLSTSKVLSLLSTNSQVVH" mRNA complement(join(306587..306910,307923..307989, 308397..308464,308591..308669,308806..308915, 308995..309187,309270..309535)) /locus_tag="TCM_011980" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07780.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07780.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g97t3; inference alignment:Newbler:10:TSA:cgbaB_g02393t00001" CDS complement(join(306798..306910,307923..307989, 308397..308464,308591..308669,308806..308915, 308995..309187,309270..309497)) /locus_tag="TCM_011980" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 3" /protein_id="EOY20604.1" /db_xref="Phytozome:POPTR_0012s07780.1" /db_xref="TAIR:AT5G50110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGA0" /translation="MVVCRCKILNVPSSLGTLVKHLPLSKPKTSFPPPQTLSFNSQTS AAIRSSSSFETLTSRQKDQVRLYVDALLQWNQKMNLTAVKEVSEVMDRHIEDSLAIIP PIQNSYVSSCNDSFDNLRIVDVGTGAGLPGLVLAIACPGWAVTLVESVNKRCLFLEHV VNLTGLSNVQVVRERAENLGQDIGFREKFDVAVARAVAEMRVLAEYCLPLVRVGGLFV AAKGHDPKEEVRNAERAIKLLGASILQLRSVESHSPHGRRTAIICLKNHPTPRKYPRG PGTPTKVPL" gene complement(315011..320468) /locus_tag="TCM_011983" /note="dbxref CacaoGD:Thecc1EG011983" mRNA complement(join(315011..315606,319906..320468)) /locus_tag="TCM_011983" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(315203..315409) /locus_tag="TCM_011983" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20606.1" /translation="MHWDGIIRPFVSGFGLAIGLQADRSISLDKDSLVSNSLTLQQNS CTLFLTLPYENLHASTHLIQQVNL" mobile_element 317394..317478 /note="source:scaffold_3_CACTA_0377 4379 4466" /mobile_element_type="transposon:TIR/CACTA" gene 320741..323665 /locus_tag="TCM_011984" /note="dbxref CacaoGD:Thecc1EG011984" mRNA join(320741..322556,322614..>322633) /locus_tag="TCM_011984" /product="Plant U-box 38 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016813t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08250.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc217t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc353t3" mRNA 320951..323665 /locus_tag="TCM_011984" /product="Plant U-box 38 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016813t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08250.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc353t3" CDS 321121..322773 /locus_tag="TCM_011984" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016813t1" /codon_start=1 /product="Plant U-box 38 isoform 1" /protein_id="EOY20607.1" /db_xref="Phytozome:POPTR_0015s08250.1" /db_xref="TAIR:AT5G65200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I357" /translation="MGGNGKHRWKISFYHRHNSSSSPKHSETQTPPEFLCPISGSLMF DPVVVPSGQSFDRISIQVCRDLGFTPTLPDGSIPDFSTTIPNLAIKTTILTWCRDHHT QDPTPLDYTSVEKIVRSKIQHQSPSTLTSAPDIRVSERELLKAVAENPPVLFSHAATE MGPRVNNNLYCSTSSSSDESVIITANSPHTPLPLATRPACFSTSGSSSSSIEITESEI NPNFQSSSSSSSSSPEEQELFLQLKSSDIYEQETGLISLRKITRTKEEARVSLCSPRL LSTLRSLIISRYNVVQTNAIASLVNLSLEKSNKVLIVRSGFVPLLIDVLKAGSSEAQE HAAGALFSLALEDENKMAIGVLGALQPLLHALRSDSERTRHDSALALYHLSLIQSNRV KLVKLGAVSTLLSMVKSGDSASRVLLILCNIAASTEGKSAMLDANAVAILVGMLRESE LVPEATRENCVAALFALSHGSMRFKGLAKEARAMEVLREVEERGSQRAKEKAIRILQM MRGREEEEDEEIDWEGALDAGGLSRSRYRAGRDVFGANSTNF" CDS join(321121..322556,322614..>322632) /locus_tag="TCM_011984" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016813t1" /codon_start=1 /product="Plant U-box 38 isoform 2" /protein_id="EOY20608.1" /db_xref="Phytozome:POPTR_0015s08250.1" /db_xref="TAIR:AT5G65200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I357" /translation="MGGNGKHRWKISFYHRHNSSSSPKHSETQTPPEFLCPISGSLMF DPVVVPSGQSFDRISIQVCRDLGFTPTLPDGSIPDFSTTIPNLAIKTTILTWCRDHHT QDPTPLDYTSVEKIVRSKIQHQSPSTLTSAPDIRVSERELLKAVAENPPVLFSHAATE MGPRVNNNLYCSTSSSSDESVIITANSPHTPLPLATRPACFSTSGSSSSSIEITESEI NPNFQSSSSSSSSSPEEQELFLQLKSSDIYEQETGLISLRKITRTKEEARVSLCSPRL LSTLRSLIISRYNVVQTNAIASLVNLSLEKSNKVLIVRSGFVPLLIDVLKAGSSEAQE HAAGALFSLALEDENKMAIGVLGALQPLLHALRSDSERTRHDSALALYHLSLIQSNRV KLVKLGAVSTLLSMVKSGDSASRVLLILCNIAASTEGKSAMLDANAVAILVGMLRESE LVPEATRENCVAALFALSHGSMRFKGLANKEKAIR" gene 323721..328782 /locus_tag="TCM_011985" /note="dbxref CacaoGD:Thecc1EG011985" mRNA join(323721..324037,324294..324693,325126..325326, 326224..326280,326348..326477,327746..327915) /locus_tag="TCM_011985" /product="DNA glycosylase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014006" /inference="similar to AA sequence:ricco:30147.m014006" /note="transcript variant 3; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g122t4" mRNA join(323788..324037,324294..324693,325126..325326, 326224..326280,326348..326477,327746..327765, 327872..328782) /locus_tag="TCM_011985" /product="DNA glycosylase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014006" /inference="similar to AA sequence:ricco:30147.m014006" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g122t4" mRNA join(324277..324693,325126..325326,326224..326280, 326348..326631) /locus_tag="TCM_011985" /product="DNA glycosylase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014006" /inference="similar to AA sequence:ricco:30147.m014006" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12190t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g122t4" CDS join(324322..324693,325126..325326,326224..326280, 326348..326477,327746..327765,327872..328432) /locus_tag="TCM_011985" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014006" /codon_start=1 /product="DNA glycosylase superfamily protein isoform 1" /protein_id="EOY20609.1" /db_xref="TAIR:AT3G47830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSV1" /translation="MKMQKSRKRKQLGIDGHSKTPKITTEEPYPSHHRPTPDECRSVR DELLALHGFPAEFLKYRHQRLIKTEPTIDAKSEPLNNNYDDGEESVLDGLVKTVLSQN TTELNSQKAFASLKSAFPTWEDVLAAESKNLENAIRCGGLAPRKASCIKNVLRCLHER KGKLCFEYLRDLSIDEIKAELSNFKGVGPKTVACVLMFNLQQDDFPVDTHVFEIARAI GWVPATADRKKTYLHLNRRIPNKLKFDLNCLLYTHDGQGTVEAGKTVKEKSVTRKLEK RKYECQFCLKKFTNSQALGGHQNAHKSERLKKRRMQLQPKSTNLSFVDEPPHDYSSVT QHCSLPSSNSRPPCVPEYTLFKEFLINFKTTLDQNQNLYCSLADFCHSIPLPSHHDHF EEGTCGRHIVIKPSPSYISKDCESLYTRLGLAPPAIHSSSRNGNMVELGKCKEG" CDS join(324322..324693,325126..325326,326224..326280, 326348..326477,327746..327780) /locus_tag="TCM_011985" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014006" /codon_start=1 /product="DNA glycosylase superfamily protein isoform 3" /protein_id="EOY20611.1" /db_xref="TAIR:AT3G47830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSV1" /translation="MKMQKSRKRKQLGIDGHSKTPKITTEEPYPSHHRPTPDECRSVR DELLALHGFPAEFLKYRHQRLIKTEPTIDAKSEPLNNNYDDGEESVLDGLVKTVLSQN TTELNSQKAFASLKSAFPTWEDVLAAESKNLENAIRCGGLAPRKASCIKNVLRCLHER KGKLCFEYLRDLSIDEIKAELSNFKGVGPKTVACVLMFNLQQDDFPVDTHVFEIARAI GWVPATADRKKTYLHLNRRIPNKLKFDLNCLLYTHDGQGTVEVIWV" CDS join(324322..324693,325126..325326,326224..326280, 326348..326596) /locus_tag="TCM_011985" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014006" /codon_start=1 /product="DNA glycosylase superfamily protein isoform 2" /protein_id="EOY20610.1" /db_xref="TAIR:AT3G47830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSV1" /translation="MKMQKSRKRKQLGIDGHSKTPKITTEEPYPSHHRPTPDECRSVR DELLALHGFPAEFLKYRHQRLIKTEPTIDAKSEPLNNNYDDGEESVLDGLVKTVLSQN TTELNSQKAFASLKSAFPTWEDVLAAESKNLENAIRCGGLAPRKASCIKNVLRCLHER KGKLCFEYLRDLSIDEIKAELSNFKGVGPKTVACVLMFNLQQDDFPVDTHVFEIARAI GWVPATADRKKTYLHLNRRIPNKLKFDLNCLLYTHGKLCRKCTMKGSSQQKSARNDDS CPLCTYCKNSSVNKIQ" gene complement(328975..330626) /locus_tag="TCM_011986" /note="dbxref CacaoGD:Thecc1EG011986" mRNA complement(328975..330626) /locus_tag="TCM_011986" /product="Peroxidase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014005" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010178t1" /inference="similar to AA sequence:ricco:30147.m014005" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11529t00001" CDS complement(329360..330352) /locus_tag="TCM_011986" /note="dbxref ricco:30147.m014005; paralog of Thecc1EG010178t1" /codon_start=1 /product="Peroxidase superfamily protein" /protein_id="EOY20612.1" /db_xref="TAIR:AT5G47000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RUF4" /translation="MAFPSFLFLIPLFLLLSIPFSESKLSTDYYKNSCPNLESIIRET VTNKQISNPTTAAATLRLFFHDCMVGGCDASVLISSNSFNKAERDADINLSLPGDAFD VIVRAKTAIELSCPGIVSCADILALATRNVINMVGGPFYAVRLGRKDSLLSTISSVEG NLPRANTTMDEIIRMFESKKFTVQEMVALNGAHTIGFSHCKEFAYRLYNYKKNTPTDP GYHPKYAAALKKVCENYTKDTAMSAFNDAMTPSKFDNMYYQNLLRGLGLLESDNALLK DPRTRPFVQLYATNQTAFFNDFARAMEKLSRYGIKTGRKGEVRRKCDAFNSIQT" gene 330951..336911 /locus_tag="TCM_011987" /note="dbxref CacaoGD:Thecc1EG011987" mRNA join(330951..331506,332011..332053,332140..332205, 332279..332340,332492..332591,332806..332988, 333364..333412,333497..333676,333897..334017, 334625..334706,334794..334879,335001..335101, 335262..335403,335504..335654,335775..336017, 336561..336911) /locus_tag="TCM_011987" /product="Glycosyl hydrolase family 47 protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014004" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020768t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s08280.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g137t1" CDS join(331367..331506,332011..332053,332140..332205, 332279..332340,332492..332591,332806..332988, 333364..333412,333497..333676,333897..334017, 334625..334706,334794..334879,335001..335101, 335262..335403,335504..335654,335775..335996) /locus_tag="TCM_011987" /note="paralog of Thecc1EG020768t2" /codon_start=1 /product="Glycosyl hydrolase family 47 protein" /protein_id="EOY20613.1" /db_xref="Phytozome:POPTR_0015s08280.1" /db_xref="TAIR:AT1G27520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SXC9" /translation="MFLPRNYGTWLLLFLLISPTLFSPSMSHLDSRWAAKKRHMREKV REMFYHAYENYMTHAFPHDELKPLTKSFTDSLSELGNLKLEHLPQDYNGSALTLIESL SSLVIMGNNTEFERAVIWLSENLTFNIDARINLFECNIRVLGGLISAHILATDSTNRL VHGSYKNQLLNLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENETTETSTSGCGSLI LEMGALSRLTGDPRYESAALRALRKLWSMRSSLNLLGTTLDVITGEWIEYSSGIGAGV DSFYEYLCKAYILFGKEDYWRMFHSAYLAVQKYFRHGSWYHEADMRTGKATYWQLTSL QAFWPGLQVLVGDIGAANSSHREFVYVWEKFGVLPERYLLDHQMLHPTEKYYPLRPEL AESTFYLYQATKDPWYIQVGESIVNSLNSYTKVEGGFASVRDVTTMQLEDHQHSFFLA ETCKYLYLLFDDSFLVDRNYIFTTEGHPLPILSSWHERLPETYIPTNWTYAKSEQPTR PASAMSLQVCPATALRSGYAVQQIESACHVPDSRGDHRCFSDEECGVDSTNCRRRSCS MAGYCGLWI" gene 337244..345049 /locus_tag="TCM_011988" /note="dbxref CacaoGD:Thecc1EG011988" mRNA join(337244..337269,338810..339284,340173..340251, 341766..341818,341936..342426,342919..343079, 343727..343933,344034..345049) /locus_tag="TCM_011988" /product="Calmodulin binding protein-like isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g10040.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07850.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01612t00002" mRNA join(338821..339284,340173..340251,341766..341818, 341936..342426,342919..343079,343727..343933, 344034..344310,344392..344769) /locus_tag="TCM_011988" /product="Calmodulin binding protein-like isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g10040.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07850.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01612t00002; inference alignment:Newbler:10:TSA:cgbaB_g01612t00002" CDS join(339112..339284,340173..340251,341766..341818, 341936..342426,342919..343079,343727..343933, 344034..344639) /locus_tag="TCM_011988" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Calmodulin binding protein-like isoform 1" /protein_id="EOY20614.1" /db_xref="Phytozome:POPTR_0012s07850.1" /db_xref="TAIR:AT5G62570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEM4" /translation="MNLIVAHHQNRLAFGVFLLSEFIVIMSQKRPQEDGKVRPSEGNS PDQDKRRRVPALRNVVHEVMKMQSIQHWLEPVLEPLIRRVVREEVEVALRKHLNNMKR NGGKEVNSTESRSLQLQFLNNLSLPVFTGARIEAEECSAIKVAIVDALTGQIVTSGPE SSAKVEVVVLEGDFDGDEGDNWTLEEFKNNIVREREGKKPLLTGDAFLTLTEGIGLVG EISFTDNSSWTRSRRFRLGARVVDGSNGTRVREAKTESFIVRDHRGELYKKHHPPSLS DEVWRLEKIGKDGAFHKRLSRENINTVKDFLTMLYVDPPRLRHILGTGMSAKMWEVTV EHARTCVLDKRMYLYCPPGSQQKSGVAFNIVGQVTGLLSECQYVTIDKLSETEKIEAQ NLVISAFERWEEVFSFDDEASLIGESSNLANIPYTSSAKTEIPNGSKFLASQKMGGFD YAQPSASSPDIISTIYSVGGMSGLDDYALHGIENMGLRYDQTLSYPGQVTNSLICDTD ITQTFCDEDHLRFFDSDLQTPGLGLESQADLQTAVDGFLLQRTVAVQAQRRWTKVFSV LKWFSIKRRVKEKFRGVRYSNGL" CDS join(339112..339284,340173..340251,341766..341818, 341936..342426,342919..343079,343727..343933, 344034..344310,344392..344639) /locus_tag="TCM_011988" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Calmodulin binding protein-like isoform 2" /protein_id="EOY20615.1" /db_xref="Phytozome:POPTR_0012s07850.1" /db_xref="TAIR:AT5G62570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEM4" /translation="MNLIVAHHQNRLAFGVFLLSEFIVIMSQKRPQEDGKVRPSEGNS PDQDKRRRVPALRNVVHEVMKMQSIQHWLEPVLEPLIRRVVREEVEVALRKHLNNMKR NGGKEVNSTESRSLQLQFLNNLSLPVFTGARIEAEECSAIKVAIVDALTGQIVTSGPE SSAKVEVVVLEGDFDGDEGDNWTLEEFKNNIVREREGKKPLLTGDAFLTLTEGIGLVG EISFTDNSSWTRSRRFRLGARVVDGSNGTRVREAKTESFIVRDHRGELYKKHHPPSLS DEVWRLEKIGKDGAFHKRLSRENINTVKDFLTMLYVDPPRLRHILGTGMSAKMWEVTV EHARTCVLDKRMYLYCPPGSQQKSGVAFNIVGQVTGLLSECQYVTIDKLSETEKIEAQ NLVISAFERWEEVFSFDDEASLIGESSNLANIPYTSSAKTEIPNGSKFLASQKMGGFD YAQPSASSPDIISTIYSVGGMSGLDDYALHDITQTFCDEDHLRFFDSDLQTPGLGLES QADLQTAVDGFLLQRTVAVQAQRRWTKVFSVLKWFSIKRRVKEKFRGVRYSNGL" gene 345083..348333 /locus_tag="TCM_011989" /note="dbxref CacaoGD:Thecc1EG011989" mRNA join(345083..345882,347337..348333) /locus_tag="TCM_011989" /product="UDP-glucosyl transferase 74B1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010198t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08330.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05464t00001_C1" CDS join(345247..345882,347337..348071) /locus_tag="TCM_011989" /note="paralog of Thecc1EG010198t1" /codon_start=1 /product="UDP-glucosyl transferase 74B1, putative" /protein_id="EOY20616.1" /db_xref="Phytozome:POPTR_0015s08330.1" /db_xref="TAIR:AT1G24100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSU7" /translation="MQNQRVHVLVVAYPAQGHLNPLIQFAKRLASKGVKATVAATPYT INSIHPNSITVEPISDGFDEGGFKQAPSVEAYLESFKTVGSRTLAELIAKFNNSGEPV SCVVYDSLLFWAVDVAKEFGIRAAMMLTNSASVCSLYWQINQGRLALPLDQETLAASV PGLPSLSFSDMPSFLAHPTSQSAYLALIMDKIRTLGRNDWVFCNSFEELESELVKALK ELWPVITIGPLVPSFYLDHQIEGDTSYGASLWKQNNDQCLRWLDSKPLRSVVYVSFGS MASISTRQFEEIAWGLKASNMPFLWVTKEFEDKLLLESIDSVGERGLFVTWCNQLEVL AHQAVGCFVTHCGWNSTLEGLSLGVPMVCVPQWSDQPTNAKFVEDVWMVGVRAKKDEE GIVRREELGKCLREVMVGEKTREIKSSASKWREHAKTAVSVGGSSDRNIDEFIRKLLT AKEKKA" mobile_element 346199..347156 /note="source:scaffold_4_CACTA_0498 1127 2085" /mobile_element_type="transposon:TIR/CACTA" gene complement(348188..351876) /locus_tag="TCM_011990" /note="dbxref CacaoGD:Thecc1EG011990" mRNA complement(join(348188..348467,349580..349626, 349979..350039,350185..350250,350819..350875, 351027..351134,351248..351402,351611..351806)) /locus_tag="TCM_011990" /product="Thiol-disulfide oxidoreductase DCC isoform 2" /inference="alignment:exonerate- protein:2:ricco:28978.m000041" /inference="similar to AA sequence:frave:gene09478" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00075t00003; inference alignment:Newbler:10:TSA:cgbaL_g00075t00004" mRNA complement(join(348281..348550,348849..348896, 349580..349626,349979..350039,350185..350250, 350819..350875,351027..351134,351248..351402, 351611..351876)) /locus_tag="TCM_011990" /product="Thiol-disulfide oxidoreductase DCC isoform 1" /inference="alignment:exonerate- protein:2:ricco:28978.m000041" /inference="similar to AA sequence:Phytozome:GSVIVT01007814001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00075t00004" CDS complement(join(348363..348467,349580..349626, 349979..350039,350185..350250,350819..350875, 351027..351134,351248..351402,351611..351770)) /locus_tag="TCM_011990" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene09478" /codon_start=1 /product="Thiol-disulfide oxidoreductase DCC isoform 2" /protein_id="EOY20618.1" /db_xref="TAIR:AT5G50100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHX0" /translation="MALRGAAVAGACIARQRATPFLLSFPQNFRVRFHHHSPSHPLQR FVTYPNYKTVFKYQIRAVQEATADIVSSQKAKEDDDDEQQSPQNWKIKMLYDGDCPLC MREVDMLRDRNKQYGTIKFVDISSDDYSPEENQNLDYKTVMGRIHAILSDGTVVTDVE AFRKLYEQVGLGWVYAITKYEPIATIADTIYGVWAKYRLQITGRPPLDEILEVRRKNK IHSFYVGLTRHELDLDYHVQGKDSTQLLKLISSC" CDS complement(join(348858..348896,349580..349626, 349979..350039,350185..350250,350819..350875, 351027..351134,351248..351402,351611..351821)) /locus_tag="TCM_011990" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Thiol-disulfide oxidoreductase DCC isoform 1" /protein_id="EOY20617.1" /db_xref="Phytozome:GSVIVT01007814001" /db_xref="TAIR:AT5G50100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHX0" /translation="MKKQTDDQTAQYHQIANMALRGAAVAGACIARQRATPFLLSFPQ NFRVRFHHHSPSHPLQRFVTYPNYKTVFKYQIRAVQEATADIVSSQKAKEDDDDEQQS PQNWKIKMLYDGDCPLCMREVDMLRDRNKQYGTIKFVDISSDDYSPEENQNLDYKTVM GRIHAILSDGTVVTDVEAFRKLYEQVGLGWVYAITKYEPIATIADTIYGVWAKYRLQI TGRPPLDEILEVRRKNKADECTDTTTCKM" gene 350250..350601 /locus_tag="TCM_011991" /note="dbxref CacaoGD:Thecc1EG011991" mRNA 350250..350601 /locus_tag="TCM_011991" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00075c00002" CDS 350307..350537 /locus_tag="TCM_011991" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20619.1" /translation="MLPNPKAESRCNITKIKSPKIKEGNKRGKPPATIKDILTLTLLS LCLNITSNLVIRLNPLLQRSIPCKLVCYLNTL" gene 352111..354192 /locus_tag="TCM_011992" /note="dbxref CacaoGD:Thecc1EG011992" mRNA join(352111..352181,352303..352371,352906..353008, 354006..354192) /locus_tag="TCM_011992" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT3G47833.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007813001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g7957t1" CDS join(352125..352181,352303..352371,352906..353008, 354006..354088) /locus_tag="TCM_011992" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20620.1" /db_xref="Phytozome:GSVIVT01007813001" /db_xref="TAIR:AT5G62575.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I366" /translation="MAFFLKKSSLANHFRSSYQKTEGSLAAPSRALHVEPGARERALL AEDPSLRRFKSYKKSVWRVKRIGDVLTVVVVAGCCYEIYVKAVMREEARNQAKAAGGS K" gene 356651..365578 /locus_tag="TCM_011993" /note="dbxref CacaoGD:Thecc1EG011993" mRNA join(356651..356999,358747..358843,358944..358985, 359062..359201,364838..365044,365359..365578) /locus_tag="TCM_011993" /product="GATA type zinc finger transcription factor family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g01870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007239t1" /inference="similar to AA sequence:ricco:30147.m014000" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14370t00001" mRNA join(356709..356999,358747..358843,358944..358983, 359114..359201,364838..365326) /locus_tag="TCM_011993" /product="GATA type zinc finger transcription factor family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g01870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007239t1" /inference="similar to AA sequence:ricco:30147.m014000" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11346t00001; inference alignment:Newbler:10:TSA:cgbaL_g14370t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc213t4_C1" mRNA join(356753..356999,358747..358843,358944..358981, 359112..359201,364838..365219) /locus_tag="TCM_011993" /product="GATA type zinc finger transcription factor family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g01870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007239t1" /inference="similar to AA sequence:ricco:30147.m014000" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07626t00001; alternateUTRof:Thecc1EG011993t2; inference alignment:Newbler:10:TSA:cgbaL_g14370t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc213t4_C1" CDS join(356862..356999,358747..358843,358944..358985, 359062..359201,364838..365044) /locus_tag="TCM_011993" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014000; paralog of Thecc1EG007239t1" /codon_start=1 /product="GATA type zinc finger transcription factor family protein isoform 1" /protein_id="EOY20621.1" /db_xref="TAIR:AT1G10200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY62" /translation="MATFAGTTQKCKACEKTVYLVDQLTADSKVYHKACFRCHHCKGT LKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKTVRVDRSADHALKVVLPYLL LILSGTLQVTNSRVSSLFAGTQEKCVACKKTVYPIEKVAVDGSSYHKACFRCTHGGCV ISPSNYVAHEQRLYCRHHHNQLFKQKGNFSQLDKHEEVKEVTENIVA" CDS join(356862..356999,358747..358843,358944..358983, 359114..359201,364838..365044) /locus_tag="TCM_011993" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014000; paralog of Thecc1EG007239t1" /codon_start=1 /product="GATA type zinc finger transcription factor family protein isoform 2" /protein_id="EOY20622.1" /db_xref="TAIR:AT1G10200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P29675" /translation="MATFAGTTQKCKACEKTVYLVDQLTADSKVYHKACFRCHHCKGT LKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKTVRVDRSADQVTNSRVSSLF AGTQEKCVACKKTVYPIEKVAVDGSSYHKACFRCTHGGCVISPSNYVAHEQRLYCRHH HNQLFKQKGNFSQLDKHEEVKEVTENIVA" CDS join(356862..356999,358747..358843,358944..358981, 359112..359201,364838..365044) /locus_tag="TCM_011993" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014000; paralog of Thecc1EG007239t1" /codon_start=1 /product="GATA type zinc finger transcription factor family protein isoform 2" /protein_id="EOY20623.1" /db_xref="TAIR:AT1G10200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P29675" /translation="MATFAGTTQKCKACEKTVYLVDQLTADSKVYHKACFRCHHCKGT LKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKTVRVDRSADQVTNSRVSSLF AGTQEKCVACKKTVYPIEKVAVDGSSYHKACFRCTHGGCVISPSNYVAHEQRLYCRHH HNQLFKQKGNFSQLDKHEEVKEVTENIVA" mobile_element complement(359436..363253) /note="source:INTACT4_F104_scaffold_5-int 1133 4966" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(363289..364422) /note="source:INTACT4_F104_scaffold_5-int 1 1134" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(368557..370227) /locus_tag="TCM_011995" /note="dbxref CacaoGD:Thecc1EG011995" mRNA complement(join(368557..369013,369320..369538, 369598..370227)) /locus_tag="TCM_011995" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07880.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07880.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc757t3_C2; inference alignment:Newbler:10:TSA:cgbaP1_g06482t00001" mRNA complement(join(368591..369030,369320..369459, 369594..369950)) /locus_tag="TCM_011995" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010230t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07880.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06482t00001; inference alignment:Newbler:10:TSA:cgbaP1_g06482t00001" CDS complement(join(368735..369013,369320..369538, 369598..369882)) /locus_tag="TCM_011995" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY20625.1" /db_xref="Phytozome:POPTR_0012s07880.2" /db_xref="TAIR:AT1G60010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T021" /translation="MGNCQAVDAATLVIQHPSGKVDKFYWPMSASEIMRMNPGHYVAL LISTTLYHSSNNDKCPDNSANNVNPVRLTRIKLLRPTDTLVLGQVYRLITTLVRKALF LSLGFYLILSYVLPGFWFLEVMKGLCAKKHAKMKKNQQESAEKPFEKAGLRPETVGRR SEPDKENKAPAEINTISQLCCQIKDMAAFITKHLRGCKLRMIRILPHMLHKTQRGATL GSCRTEIQATFLTCKKQIQFLTLGMQVANQEKNTPTFFKVQI" CDS complement(join(368920..369030,369320..369459, 369594..369882)) /locus_tag="TCM_011995" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010230t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20624.1" /db_xref="Phytozome:POPTR_0012s07880.1" /db_xref="TAIR:AT1G60010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T021" /translation="MGNCQAVDAATLVIQHPSGKVDKFYWPMSASEIMRMNPGHYVAL LISTTLYHSSNNDKCPDNSANNVNPVRLTRIKLLRPTDTLVLGQVYRLITTQEVMKGL CAKKHAKMKKNQQESAEKPFEKAGLRPETVGRRSEPDKENKVSKHERHRPRSTPSANS AARSKTWQPSLQSISEAAS" gene 370767..373022 /locus_tag="TCM_011996" /note="dbxref CacaoGD:Thecc1EG011996" mRNA join(370767..370909,372180..373022) /locus_tag="TCM_011996" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.40 coverage" CDS join(370808..370909,372180..372356) /locus_tag="TCM_011996" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20626.1" /translation="MTPKVPFGARSREGREAAVDHGRMGMSHSHRTRKMHTMTTLEDK ILSLCFTGDQGQFPSSMPGCINWEQKQLHHTGEAVGALTLPDFFCPEI" gene complement(374292..375798) /locus_tag="TCM_011997" /note="dbxref CacaoGD:Thecc1EG011997" mRNA complement(374292..375798) /locus_tag="TCM_011997" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(375292..375591) /locus_tag="TCM_011997" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20627.1" /translation="MSRHNKTCYTNFLVDVYYRISALFRIWHPLWSGDIKYSKAERTM EQDEMNFRVNTNRSKLSVLPSGNTVHFTKFYFHQSINSSAFISSFASTFSSEQTL" gene complement(375887..382716) /locus_tag="TCM_011998" /note="dbxref CacaoGD:Thecc1EG011998" mRNA complement(join(375887..376882,376992..377152, 377253..377330,377418..377509,377612..377670, 377962..378048,378449..378545,379305..379489, 379607..379666,379769..379844,380143..380243, 380623..380799,380919..381016,381910..382031, 382690..382716)) /locus_tag="TCM_011998" /product="Xanthine/uracil permease family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013996" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010231t1" /inference="similar to AA sequence:ricco:30147.m013996" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b011583t1a3; alternateUTRof:Thecc1EG011998t1; inference alignment:Newbler:10:TSA:cgbaL_g00915t00004" mRNA complement(join(375887..376882,376992..377152, 377253..377330,377418..377509,377612..377670, 377962..378048,378449..378545,379305..379489, 379607..379666,379769..379844,380143..380243, 380623..380799,380919..381016,381910..382031, 382429..382661)) /locus_tag="TCM_011998" /product="Xanthine/uracil permease family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013996" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010231t1" /inference="similar to AA sequence:ricco:30147.m013996" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b011583t1a2; alternateUTRof:Thecc1EG011998t1; inference alignment:Newbler:10:TSA:cgbaL_g00915t00004" mRNA complement(join(376392..376882,376992..377152, 377253..377330,377418..377509,377612..377670, 377962..378048,378449..378545,379305..379489, 379607..379666,379769..379844,380143..380243, 380623..380799,380919..381016,381910..382031, 382196..382716)) /locus_tag="TCM_011998" /product="Xanthine/uracil permease family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013996" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010231t1" /inference="similar to AA sequence:ricco:30147.m013996" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00915t00004; inference alignment:Newbler:10:TSA:cgbaL_g00915t00004" CDS complement(join(376664..376882,376992..377152, 377253..377330,377418..377509,377612..377670, 377962..378048,378449..378545,379305..379489, 379607..379666,379769..379844,380143..380243, 380623..380799,380919..381016,381910..382012)) /locus_tag="TCM_011998" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013996; paralog of Thecc1EG010231t1" /codon_start=1 /product="Xanthine/uracil permease family protein isoform 1" /protein_id="EOY20628.1" /db_xref="TAIR:AT5G62890.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZQ5" /translation="MAGRAPAKADEPQPHPPKEQLPNISYCITSPPPWPEAILLGFQH YLVMLGTTVIIPSSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQTLFGTRLPAVIGGS YTFVPTTISIILAGRFSDTSDPIERFKRIMRAIQGSLIVASTLQIVLGFSGLWRNVAR FLSPLSVVPLVSLVGFGLYEFGFPGVAKCVEIGLPQLILIVFISQYMPHVIKSGRHVF DRFAVIFSVVVVWIYAHLLTVGGAYNGKAPKTQISCRTDRAGLIDAAPWIRVPYPFQW GAPSFDAGEAFAMMMASFVALVESTGAFIAVSRYASATPMPPSILSRGVGWQGVAILV SGLFGTVNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPI IAALYCLFFAYVGAGGLSFLQFCNLNSFRTKFILGFSVFMGLSVPQYFNEYTALNGYG PVHTGARWFNDIVNVPLSSEAFVAGCLAYFLDNTLHRKDSSIRKDRGKHWWDKFRSFK GDSRSEEFYSLPFNLNKYFPSV" CDS complement(join(376664..376882,376992..377152, 377253..377330,377418..377509,377612..377670, 377962..378048,378449..378545,379305..379489, 379607..379666,379769..379844,380143..380243, 380623..380799,380919..381016,381910..382012)) /locus_tag="TCM_011998" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013996; paralog of Thecc1EG010231t1" /codon_start=1 /product="Xanthine/uracil permease family protein isoform 1" /protein_id="EOY20629.1" /db_xref="TAIR:AT5G62890.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZQ5" /translation="MAGRAPAKADEPQPHPPKEQLPNISYCITSPPPWPEAILLGFQH YLVMLGTTVIIPSSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQTLFGTRLPAVIGGS YTFVPTTISIILAGRFSDTSDPIERFKRIMRAIQGSLIVASTLQIVLGFSGLWRNVAR FLSPLSVVPLVSLVGFGLYEFGFPGVAKCVEIGLPQLILIVFISQYMPHVIKSGRHVF DRFAVIFSVVVVWIYAHLLTVGGAYNGKAPKTQISCRTDRAGLIDAAPWIRVPYPFQW GAPSFDAGEAFAMMMASFVALVESTGAFIAVSRYASATPMPPSILSRGVGWQGVAILV SGLFGTVNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPI IAALYCLFFAYVGAGGLSFLQFCNLNSFRTKFILGFSVFMGLSVPQYFNEYTALNGYG PVHTGARWFNDIVNVPLSSEAFVAGCLAYFLDNTLHRKDSSIRKDRGKHWWDKFRSFK GDSRSEEFYSLPFNLNKYFPSV" CDS complement(join(376664..376882,376992..377152, 377253..377330,377418..377509,377612..377670, 377962..378048,378449..378545,379305..379489, 379607..379666,379769..379844,380143..380243, 380623..380799,380919..381016,381910..382012)) /locus_tag="TCM_011998" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m013996; paralog of Thecc1EG010231t1" /codon_start=1 /product="Xanthine/uracil permease family protein isoform 1" /protein_id="EOY20630.1" /db_xref="TAIR:AT5G62890.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZQ5" /translation="MAGRAPAKADEPQPHPPKEQLPNISYCITSPPPWPEAILLGFQH YLVMLGTTVIIPSSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQTLFGTRLPAVIGGS YTFVPTTISIILAGRFSDTSDPIERFKRIMRAIQGSLIVASTLQIVLGFSGLWRNVAR FLSPLSVVPLVSLVGFGLYEFGFPGVAKCVEIGLPQLILIVFISQYMPHVIKSGRHVF DRFAVIFSVVVVWIYAHLLTVGGAYNGKAPKTQISCRTDRAGLIDAAPWIRVPYPFQW GAPSFDAGEAFAMMMASFVALVESTGAFIAVSRYASATPMPPSILSRGVGWQGVAILV SGLFGTVNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPI IAALYCLFFAYVGAGGLSFLQFCNLNSFRTKFILGFSVFMGLSVPQYFNEYTALNGYG PVHTGARWFNDIVNVPLSSEAFVAGCLAYFLDNTLHRKDSSIRKDRGKHWWDKFRSFK GDSRSEEFYSLPFNLNKYFPSV" mobile_element 384382..384960 /note="source:scaffold_9_CACTA_0946 17753 18265" /mobile_element_type="transposon:TIR/CACTA" mobile_element 386497..386992 /note="source:scaffold_5_CACTA_0614 1494 2028" /mobile_element_type="transposon:TIR/CACTA" mobile_element 386958..387088 /note="source:MITE_hAT_26 880 1013" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(386983..387122) /note="source:MITE_hAT_14 1 176" /mobile_element_type="transposon:TIR/MITE" gene complement(387209..390053) /locus_tag="TCM_011999" /note="dbxref CacaoGD:Thecc1EG011999" mRNA complement(join(387209..387511,387849..387995, 388101..388357,388486..388727,388826..388863, 388979..389089,389414..389533,390007..390053)) /locus_tag="TCM_011999" /product="Ubiquitin-protein ligase-like protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006413" /inference="similar to AA sequence:ricco:30169.m006413" /note="quality class is strong, express is strong, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g130t1" CDS complement(join(387317..387511,387849..387995, 388101..388357,388486..388727,388826..388863, 388979..389089,389414..389446)) /locus_tag="TCM_011999" /note="dbxref ricco:30169.m006413" /codon_start=1 /product="Ubiquitin-protein ligase-like protein" /protein_id="EOY20631.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RI98" /translation="MEKRKAILSTTGNPEPEIEETDTKVDRITSLPKEVMADILSRLT LEEAERMMLKGLTLGLGFAIDKRAQSLELDLLRARYVRRAGHSLGGLLRAGHFLGDGV LLRGGDFPGAGDLGRREHCLGAILPYRNDGSYSSPLHLLSADASANLKCLELRNCHSL KKVEIYAVNLVSLFYNGSDGVPVTLNLPHLAELLVGGNYLHQIYHLSQLQIILSQLES LSFDVSGAKAWPFLKNIPTLSNLKHLELESGITGVSHSFLPFTSLLTAAPLLHTFTLK GSSCDGVGFPLALLEKLMIDPCPPYYLDNRDESRFRESWDYKSAKLQAMELQAKIPPG IEFIVA" gene 390797..398091 /locus_tag="TCM_012001" /note="dbxref CacaoGD:Thecc1EG012001" mRNA join(390797..391031,392626..392783,393873..394045, 398062..398091) /locus_tag="TCM_012001" /product="Ribosomal protein L29 family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g20510.1" /inference="similar to AA sequence:Phytozome:Glyma06g20510.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g7944t1" CDS join(390878..391031,392626..392783,393873..393980) /locus_tag="TCM_012001" /codon_start=1 /product="Ribosomal protein L29 family protein" /protein_id="EOY20632.1" /db_xref="Phytozome:Glyma06g20510.1" /db_xref="TAIR:AT1G07830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94JQ7" /translation="MFLSRFVGRTALLAAAKSERSAAAAAAATGRNPLEQFFEADRSP DDEKPVYGRSWKASELRLKSWDDLHKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERI PKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMINAL" gene 394657..396172 /locus_tag="TCM_012002" /note="dbxref CacaoGD:Thecc1EG012002" mRNA join(394657..395072,395153..396172) /locus_tag="TCM_012002" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.48 coverage" CDS join(394711..395072,395153..395183) /locus_tag="TCM_012002" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20633.1" /translation="MKRGRPFYPFVWMIVTDNEVQAGFLFRQMAIHISQCRIDLSTAM IQTAHCAHLCFKHTQLQALSFSLPSQPLTFSLFVLFPIFLPCDFHCQRPTIKFATSNP YALLLLGLKAPLVATFSVGAGLHVLSNV" mobile_element 396572..397347 /note="source:scaffold_10_CACTA_0130 8733 9601" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(397233..397364) /note="source:scaffold_4_CACTA_0511 2467 2587" /mobile_element_type="transposon:TIR/CACTA" gene 398506..408372 /locus_tag="TCM_012003" /note="dbxref CacaoGD:Thecc1EG012003" mRNA join(398506..399240,401401..401772,401855..404543, 404675..406402,406611..406678,407068..407107, 407494..407988,408308..408372) /locus_tag="TCM_012003" /product="BAH domain,TFIIS helical bundle-like domain isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013994" /inference="similar to AA sequence:Phytozome:POPTR_0015s08400.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc304t7" mRNA join(398650..399240,401401..401772,401855..404543, 404675..406402,406611..406678,407108..407603) /locus_tag="TCM_012003" /product="BAH domain,TFIIS helical bundle-like domain isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09457" /inference="alignment:exonerate- protein:2:ricco:30147.m013994" /inference="similar to AA sequence:Phytozome:POPTR_0015s08400.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g343t2; alternateUTRof:Thecc1EG012003t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc304t7" mRNA join(398668..399240,401401..401772,401855..404543, 404675..406402,406611..406678,407068..407607) /locus_tag="TCM_012003" /product="BAH domain,TFIIS helical bundle-like domain isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09457" /inference="alignment:exonerate- protein:2:ricco:30147.m013994" /inference="similar to AA sequence:Phytozome:POPTR_0015s08400.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc316t3; alternateUTRof:Thecc1EG012003t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc304t7" mRNA join(398897..399240,401401..401772,401855..404543, 404675..407607) /locus_tag="TCM_012003" /product="BAH domain,TFIIS helical bundle-like domain isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09457" /inference="alignment:exonerate- protein:2:ricco:30147.m013994" /inference="similar to AA sequence:Phytozome:POPTR_0015s08400.2" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc304t11; alternateUTRof:Thecc1EG012003t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc304t7" mRNA join(398897..399187,401401..401772,401855..404543, 404675..406402,406611..407607) /locus_tag="TCM_012003" /product="BAH domain,TFIIS helical bundle-like domain isoform 5" /inference="alignment:exonerate-protein:2:frave:gene09457" /inference="alignment:exonerate- protein:2:ricco:30147.m013994" /inference="similar to AA sequence:ricco:30147.m013994" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc304t6; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc304t7" CDS join(399097..399240,401401..401772,401855..404543, 404675..406362) /locus_tag="TCM_012003" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="BAH domain,TFIIS helical bundle-like domain isoform 1" /protein_id="EOY20634.1" /db_xref="Phytozome:POPTR_0015s08400.2" /db_xref="TAIR:AT3G48050.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JCS8" /translation="MHGRGGGEERKRARHMWTVPTRATAVLSGDGGASPSSSSSSTVN SFCKDGRKISVGDCALFKPPQDSPPFIGIIRCLIAGKENKLRLGVNWLYRPAEVKLGK GILLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKDVELPSGICSFVCRRVYDITNK CLWWLTDQDYINERQEEVDQLLDKTRLEMHATVQPGGRSPKPMNGPTSTSQIKPGSDS VQNSASSFPSQGKGKKRERGDQGSEPVKRERTSKMDDGDSGHGRPEINLKSEIAKITE KGGLEDSEGVEKLVQLMVPERNEKKIDLVSRSMLAGVIAATDKFDCLSRFVQLRGLPV FDEWLQEVHKGKIGDGSGSKDDRSVDDFLLTLLRALDKLPVNLTALQMCNIGKSVNHL RSHKNLEIQKKARGLVDTWKKRVEAEMDAKSGSNQAVPWSARPRISEVSHSGSKHSGS SEVAVKSSVTQFSASKTGSVKLAQGETPTKSASASPGSMKAATSPVSASTNLKDGQAR NATAVGTSDPQTTARDEKSSSSSQSHNNSQSCSSDHAKTGGVSGKEEARSSAAGSGTV TKISGSSSRHRKSINGFPGSSGVQRETGSSKNSSLHRNPASEKISQSGLTCEKAVDAP MAEGNSHKFIVKIPNRGRSPAQSVSGGSLEDLSVMNSRASSPVLSEKHEQSDRNTKEK SETYRANVTTDVNTESWQSNDFKDVLTGSDEGDGSPAAVPDEEHCRIGEDARKTTEVT KTASSSSGNELKSGKLQEASFSSINALIDSCVKYSEANACMPVGDDAGMNLLASVAAG EISKSDVASPIDSPQRNTPVVEHSSTGNDTRLKPSAGDDVVRDRHQSVEGADDEHLKQ GTVAGNSWAKNADCKTGSSQEKSGGELNEHLISSSMGLPQTADQCLENGKLKEIVAAA LVNLPSGSTVEKTTDVGDSKEHLEKKAGGVDDDSSLDTKQKGSTSLVNEDKVVDPGVK VEKEAVDGSSSVPSMEVDVEDKKNVTEGLDRSLQTHENSAAVTGNSTKGADKEASPPG SAKDIVLEKVGEVKLEKDVETDARSHVAHTEKQKPEWETVTARKGEQVEENLECSEVH EPRGGPSPCRASSTVMETEQPTRSRGSKLTVAEADEAEERTSTTSDAPATGGADADAK VEFDLNEGFNADEAKFGEPNNLTAPGCSPPVQLISPLPFPVSSVSSSLPASITVAAAA KGPFVPPDDLLRTKGVLGWKGSAATSAFRPAEPRKSLDMPLGTSNASMPDATTCKQSR PPLDIDLNVPDERVLEDLASRSSAQGTDSAPDLTNNRDLTCGLMGSAPIRSSGGLDLD LNRVDEPIDLGNHSTGSSRRLDVPMQPLKSSSGGILNGEASVRRDFDLNNGPAVDEVS AEPSLFSQHNRSSNVPSQPPVSSLRINNTEMANFSSWFPTGNTYSAVTIPSILPDRGE QPFPIVATGGPPRVLGPPTAATPFNPDVYRGPVLSSSPAVPFPSAPFQYPVFPFGTTF PLPSTSFSGGSTTYVDSSPSGRLCFPPVSQLLGPAGAVPSHYARPYVVSLPDGSNNSG AESGRKWGRQGLDLNAGPGGPDIEGRDETSPLASRQLSVASSQALAEEQARMYQVPGG ILKRKEPEGGWDGYKQSSWQ" CDS join(399097..399240,401401..401772,401855..404543, 404675..406362) /locus_tag="TCM_012003" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="BAH domain,TFIIS helical bundle-like domain isoform 1" /protein_id="EOY20635.1" /db_xref="Phytozome:POPTR_0015s08400.2" /db_xref="TAIR:AT3G48050.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JCS8" /translation="MHGRGGGEERKRARHMWTVPTRATAVLSGDGGASPSSSSSSTVN SFCKDGRKISVGDCALFKPPQDSPPFIGIIRCLIAGKENKLRLGVNWLYRPAEVKLGK GILLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKDVELPSGICSFVCRRVYDITNK CLWWLTDQDYINERQEEVDQLLDKTRLEMHATVQPGGRSPKPMNGPTSTSQIKPGSDS VQNSASSFPSQGKGKKRERGDQGSEPVKRERTSKMDDGDSGHGRPEINLKSEIAKITE KGGLEDSEGVEKLVQLMVPERNEKKIDLVSRSMLAGVIAATDKFDCLSRFVQLRGLPV FDEWLQEVHKGKIGDGSGSKDDRSVDDFLLTLLRALDKLPVNLTALQMCNIGKSVNHL RSHKNLEIQKKARGLVDTWKKRVEAEMDAKSGSNQAVPWSARPRISEVSHSGSKHSGS SEVAVKSSVTQFSASKTGSVKLAQGETPTKSASASPGSMKAATSPVSASTNLKDGQAR NATAVGTSDPQTTARDEKSSSSSQSHNNSQSCSSDHAKTGGVSGKEEARSSAAGSGTV TKISGSSSRHRKSINGFPGSSGVQRETGSSKNSSLHRNPASEKISQSGLTCEKAVDAP MAEGNSHKFIVKIPNRGRSPAQSVSGGSLEDLSVMNSRASSPVLSEKHEQSDRNTKEK SETYRANVTTDVNTESWQSNDFKDVLTGSDEGDGSPAAVPDEEHCRIGEDARKTTEVT KTASSSSGNELKSGKLQEASFSSINALIDSCVKYSEANACMPVGDDAGMNLLASVAAG EISKSDVASPIDSPQRNTPVVEHSSTGNDTRLKPSAGDDVVRDRHQSVEGADDEHLKQ GTVAGNSWAKNADCKTGSSQEKSGGELNEHLISSSMGLPQTADQCLENGKLKEIVAAA LVNLPSGSTVEKTTDVGDSKEHLEKKAGGVDDDSSLDTKQKGSTSLVNEDKVVDPGVK VEKEAVDGSSSVPSMEVDVEDKKNVTEGLDRSLQTHENSAAVTGNSTKGADKEASPPG SAKDIVLEKVGEVKLEKDVETDARSHVAHTEKQKPEWETVTARKGEQVEENLECSEVH EPRGGPSPCRASSTVMETEQPTRSRGSKLTVAEADEAEERTSTTSDAPATGGADADAK VEFDLNEGFNADEAKFGEPNNLTAPGCSPPVQLISPLPFPVSSVSSSLPASITVAAAA KGPFVPPDDLLRTKGVLGWKGSAATSAFRPAEPRKSLDMPLGTSNASMPDATTCKQSR PPLDIDLNVPDERVLEDLASRSSAQGTDSAPDLTNNRDLTCGLMGSAPIRSSGGLDLD LNRVDEPIDLGNHSTGSSRRLDVPMQPLKSSSGGILNGEASVRRDFDLNNGPAVDEVS AEPSLFSQHNRSSNVPSQPPVSSLRINNTEMANFSSWFPTGNTYSAVTIPSILPDRGE QPFPIVATGGPPRVLGPPTAATPFNPDVYRGPVLSSSPAVPFPSAPFQYPVFPFGTTF PLPSTSFSGGSTTYVDSSPSGRLCFPPVSQLLGPAGAVPSHYARPYVVSLPDGSNNSG AESGRKWGRQGLDLNAGPGGPDIEGRDETSPLASRQLSVASSQALAEEQARMYQVPGG ILKRKEPEGGWDGYKQSSWQ" CDS join(399097..399240,401401..401772,401855..404543, 404675..406362) /locus_tag="TCM_012003" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="BAH domain,TFIIS helical bundle-like domain isoform 1" /protein_id="EOY20636.1" /db_xref="Phytozome:POPTR_0015s08400.2" /db_xref="TAIR:AT3G48050.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JCS8" /translation="MHGRGGGEERKRARHMWTVPTRATAVLSGDGGASPSSSSSSTVN SFCKDGRKISVGDCALFKPPQDSPPFIGIIRCLIAGKENKLRLGVNWLYRPAEVKLGK GILLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKDVELPSGICSFVCRRVYDITNK CLWWLTDQDYINERQEEVDQLLDKTRLEMHATVQPGGRSPKPMNGPTSTSQIKPGSDS VQNSASSFPSQGKGKKRERGDQGSEPVKRERTSKMDDGDSGHGRPEINLKSEIAKITE KGGLEDSEGVEKLVQLMVPERNEKKIDLVSRSMLAGVIAATDKFDCLSRFVQLRGLPV FDEWLQEVHKGKIGDGSGSKDDRSVDDFLLTLLRALDKLPVNLTALQMCNIGKSVNHL RSHKNLEIQKKARGLVDTWKKRVEAEMDAKSGSNQAVPWSARPRISEVSHSGSKHSGS SEVAVKSSVTQFSASKTGSVKLAQGETPTKSASASPGSMKAATSPVSASTNLKDGQAR NATAVGTSDPQTTARDEKSSSSSQSHNNSQSCSSDHAKTGGVSGKEEARSSAAGSGTV TKISGSSSRHRKSINGFPGSSGVQRETGSSKNSSLHRNPASEKISQSGLTCEKAVDAP MAEGNSHKFIVKIPNRGRSPAQSVSGGSLEDLSVMNSRASSPVLSEKHEQSDRNTKEK SETYRANVTTDVNTESWQSNDFKDVLTGSDEGDGSPAAVPDEEHCRIGEDARKTTEVT KTASSSSGNELKSGKLQEASFSSINALIDSCVKYSEANACMPVGDDAGMNLLASVAAG EISKSDVASPIDSPQRNTPVVEHSSTGNDTRLKPSAGDDVVRDRHQSVEGADDEHLKQ GTVAGNSWAKNADCKTGSSQEKSGGELNEHLISSSMGLPQTADQCLENGKLKEIVAAA LVNLPSGSTVEKTTDVGDSKEHLEKKAGGVDDDSSLDTKQKGSTSLVNEDKVVDPGVK VEKEAVDGSSSVPSMEVDVEDKKNVTEGLDRSLQTHENSAAVTGNSTKGADKEASPPG SAKDIVLEKVGEVKLEKDVETDARSHVAHTEKQKPEWETVTARKGEQVEENLECSEVH EPRGGPSPCRASSTVMETEQPTRSRGSKLTVAEADEAEERTSTTSDAPATGGADADAK VEFDLNEGFNADEAKFGEPNNLTAPGCSPPVQLISPLPFPVSSVSSSLPASITVAAAA KGPFVPPDDLLRTKGVLGWKGSAATSAFRPAEPRKSLDMPLGTSNASMPDATTCKQSR PPLDIDLNVPDERVLEDLASRSSAQGTDSAPDLTNNRDLTCGLMGSAPIRSSGGLDLD LNRVDEPIDLGNHSTGSSRRLDVPMQPLKSSSGGILNGEASVRRDFDLNNGPAVDEVS AEPSLFSQHNRSSNVPSQPPVSSLRINNTEMANFSSWFPTGNTYSAVTIPSILPDRGE QPFPIVATGGPPRVLGPPTAATPFNPDVYRGPVLSSSPAVPFPSAPFQYPVFPFGTTF PLPSTSFSGGSTTYVDSSPSGRLCFPPVSQLLGPAGAVPSHYARPYVVSLPDGSNNSG AESGRKWGRQGLDLNAGPGGPDIEGRDETSPLASRQLSVASSQALAEEQARMYQVPGG ILKRKEPEGGWDGYKQSSWQ" CDS join(399097..399240,401401..401772,401855..404543, 404675..406362) /locus_tag="TCM_012003" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="BAH domain,TFIIS helical bundle-like domain isoform 1" /protein_id="EOY20639.1" /db_xref="Phytozome:POPTR_0015s08400.2" /db_xref="TAIR:AT3G48050.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JCS8" /translation="MHGRGGGEERKRARHMWTVPTRATAVLSGDGGASPSSSSSSTVN SFCKDGRKISVGDCALFKPPQDSPPFIGIIRCLIAGKENKLRLGVNWLYRPAEVKLGK GILLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKDVELPSGICSFVCRRVYDITNK CLWWLTDQDYINERQEEVDQLLDKTRLEMHATVQPGGRSPKPMNGPTSTSQIKPGSDS VQNSASSFPSQGKGKKRERGDQGSEPVKRERTSKMDDGDSGHGRPEINLKSEIAKITE KGGLEDSEGVEKLVQLMVPERNEKKIDLVSRSMLAGVIAATDKFDCLSRFVQLRGLPV FDEWLQEVHKGKIGDGSGSKDDRSVDDFLLTLLRALDKLPVNLTALQMCNIGKSVNHL RSHKNLEIQKKARGLVDTWKKRVEAEMDAKSGSNQAVPWSARPRISEVSHSGSKHSGS SEVAVKSSVTQFSASKTGSVKLAQGETPTKSASASPGSMKAATSPVSASTNLKDGQAR NATAVGTSDPQTTARDEKSSSSSQSHNNSQSCSSDHAKTGGVSGKEEARSSAAGSGTV TKISGSSSRHRKSINGFPGSSGVQRETGSSKNSSLHRNPASEKISQSGLTCEKAVDAP MAEGNSHKFIVKIPNRGRSPAQSVSGGSLEDLSVMNSRASSPVLSEKHEQSDRNTKEK SETYRANVTTDVNTESWQSNDFKDVLTGSDEGDGSPAAVPDEEHCRIGEDARKTTEVT KTASSSSGNELKSGKLQEASFSSINALIDSCVKYSEANACMPVGDDAGMNLLASVAAG EISKSDVASPIDSPQRNTPVVEHSSTGNDTRLKPSAGDDVVRDRHQSVEGADDEHLKQ GTVAGNSWAKNADCKTGSSQEKSGGELNEHLISSSMGLPQTADQCLENGKLKEIVAAA LVNLPSGSTVEKTTDVGDSKEHLEKKAGGVDDDSSLDTKQKGSTSLVNEDKVVDPGVK VEKEAVDGSSSVPSMEVDVEDKKNVTEGLDRSLQTHENSAAVTGNSTKGADKEASPPG SAKDIVLEKVGEVKLEKDVETDARSHVAHTEKQKPEWETVTARKGEQVEENLECSEVH EPRGGPSPCRASSTVMETEQPTRSRGSKLTVAEADEAEERTSTTSDAPATGGADADAK VEFDLNEGFNADEAKFGEPNNLTAPGCSPPVQLISPLPFPVSSVSSSLPASITVAAAA KGPFVPPDDLLRTKGVLGWKGSAATSAFRPAEPRKSLDMPLGTSNASMPDATTCKQSR PPLDIDLNVPDERVLEDLASRSSAQGTDSAPDLTNNRDLTCGLMGSAPIRSSGGLDLD LNRVDEPIDLGNHSTGSSRRLDVPMQPLKSSSGGILNGEASVRRDFDLNNGPAVDEVS AEPSLFSQHNRSSNVPSQPPVSSLRINNTEMANFSSWFPTGNTYSAVTIPSILPDRGE QPFPIVATGGPPRVLGPPTAATPFNPDVYRGPVLSSSPAVPFPSAPFQYPVFPFGTTF PLPSTSFSGGSTTYVDSSPSGRLCFPPVSQLLGPAGAVPSHYARPYVVSLPDGSNNSG AESGRKWGRQGLDLNAGPGGPDIEGRDETSPLASRQLSVASSQALAEEQARMYQVPGG ILKRKEPEGGWDGYKQSSWQ" CDS join(399185..399187,401401..401772,401855..404543, 404675..406362) /locus_tag="TCM_012003" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30147.m013994" /codon_start=1 /product="BAH domain,TFIIS helical bundle-like domain isoform 5" /protein_id="EOY20638.1" /db_xref="TAIR:AT3G48050.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JCS8" /translation="MDGRKISVGDCALFKPPQDSPPFIGIIRCLIAGKENKLRLGVNW LYRPAEVKLGKGILLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKDVELPSGICSF VCRRVYDITNKCLWWLTDQDYINERQEEVDQLLDKTRLEMHATVQPGGRSPKPMNGPT STSQIKPGSDSVQNSASSFPSQGKGKKRERGDQGSEPVKRERTSKMDDGDSGHGRPEI NLKSEIAKITEKGGLEDSEGVEKLVQLMVPERNEKKIDLVSRSMLAGVIAATDKFDCL SRFVQLRGLPVFDEWLQEVHKGKIGDGSGSKDDRSVDDFLLTLLRALDKLPVNLTALQ MCNIGKSVNHLRSHKNLEIQKKARGLVDTWKKRVEAEMDAKSGSNQAVPWSARPRISE VSHSGSKHSGSSEVAVKSSVTQFSASKTGSVKLAQGETPTKSASASPGSMKAATSPVS ASTNLKDGQARNATAVGTSDPQTTARDEKSSSSSQSHNNSQSCSSDHAKTGGVSGKEE ARSSAAGSGTVTKISGSSSRHRKSINGFPGSSGVQRETGSSKNSSLHRNPASEKISQS GLTCEKAVDAPMAEGNSHKFIVKIPNRGRSPAQSVSGGSLEDLSVMNSRASSPVLSEK HEQSDRNTKEKSETYRANVTTDVNTESWQSNDFKDVLTGSDEGDGSPAAVPDEEHCRI GEDARKTTEVTKTASSSSGNELKSGKLQEASFSSINALIDSCVKYSEANACMPVGDDA GMNLLASVAAGEISKSDVASPIDSPQRNTPVVEHSSTGNDTRLKPSAGDDVVRDRHQS VEGADDEHLKQGTVAGNSWAKNADCKTGSSQEKSGGELNEHLISSSMGLPQTADQCLE NGKLKEIVAAALVNLPSGSTVEKTTDVGDSKEHLEKKAGGVDDDSSLDTKQKGSTSLV NEDKVVDPGVKVEKEAVDGSSSVPSMEVDVEDKKNVTEGLDRSLQTHENSAAVTGNST KGADKEASPPGSAKDIVLEKVGEVKLEKDVETDARSHVAHTEKQKPEWETVTARKGEQ VEENLECSEVHEPRGGPSPCRASSTVMETEQPTRSRGSKLTVAEADEAEERTSTTSDA PATGGADADAKVEFDLNEGFNADEAKFGEPNNLTAPGCSPPVQLISPLPFPVSSVSSS LPASITVAAAAKGPFVPPDDLLRTKGVLGWKGSAATSAFRPAEPRKSLDMPLGTSNAS MPDATTCKQSRPPLDIDLNVPDERVLEDLASRSSAQGTDSAPDLTNNRDLTCGLMGSA PIRSSGGLDLDLNRVDEPIDLGNHSTGSSRRLDVPMQPLKSSSGGILNGEASVRRDFD LNNGPAVDEVSAEPSLFSQHNRSSNVPSQPPVSSLRINNTEMANFSSWFPTGNTYSAV TIPSILPDRGEQPFPIVATGGPPRVLGPPTAATPFNPDVYRGPVLSSSPAVPFPSAPF QYPVFPFGTTFPLPSTSFSGGSTTYVDSSPSGRLCFPPVSQLLGPAGAVPSHYARPYV VSLPDGSNNSGAESGRKWGRQGLDLNAGPGGPDIEGRDETSPLASRQLSVASSQALAE EQARMYQVPGGILKRKEPEGGWDGYKQSSWQ" mRNA join(399213..399650,401401..401772,401855..404543, 404675..406402,406611..407607) /locus_tag="TCM_012003" /product="BAH domain,TFIIS helical bundle-like domain isoform 4" /inference="alignment:exonerate-protein:2:frave:gene09457" /inference="alignment:exonerate- protein:2:ricco:30147.m013994" /inference="similar to AA sequence:ricco:30147.m013994" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc304t10_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc304t7" CDS join(401903..404543,404675..406362) /locus_tag="TCM_012003" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m013994" /codon_start=1 /product="BAH domain,TFIIS helical bundle-like domain isoform 4" /protein_id="EOY20637.1" /db_xref="TAIR:AT3G48050.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JCS8" /translation="MHATVQPGGRSPKPMNGPTSTSQIKPGSDSVQNSASSFPSQGKG KKRERGDQGSEPVKRERTSKMDDGDSGHGRPEINLKSEIAKITEKGGLEDSEGVEKLV QLMVPERNEKKIDLVSRSMLAGVIAATDKFDCLSRFVQLRGLPVFDEWLQEVHKGKIG DGSGSKDDRSVDDFLLTLLRALDKLPVNLTALQMCNIGKSVNHLRSHKNLEIQKKARG LVDTWKKRVEAEMDAKSGSNQAVPWSARPRISEVSHSGSKHSGSSEVAVKSSVTQFSA SKTGSVKLAQGETPTKSASASPGSMKAATSPVSASTNLKDGQARNATAVGTSDPQTTA RDEKSSSSSQSHNNSQSCSSDHAKTGGVSGKEEARSSAAGSGTVTKISGSSSRHRKSI NGFPGSSGVQRETGSSKNSSLHRNPASEKISQSGLTCEKAVDAPMAEGNSHKFIVKIP NRGRSPAQSVSGGSLEDLSVMNSRASSPVLSEKHEQSDRNTKEKSETYRANVTTDVNT ESWQSNDFKDVLTGSDEGDGSPAAVPDEEHCRIGEDARKTTEVTKTASSSSGNELKSG KLQEASFSSINALIDSCVKYSEANACMPVGDDAGMNLLASVAAGEISKSDVASPIDSP QRNTPVVEHSSTGNDTRLKPSAGDDVVRDRHQSVEGADDEHLKQGTVAGNSWAKNADC KTGSSQEKSGGELNEHLISSSMGLPQTADQCLENGKLKEIVAAALVNLPSGSTVEKTT DVGDSKEHLEKKAGGVDDDSSLDTKQKGSTSLVNEDKVVDPGVKVEKEAVDGSSSVPS MEVDVEDKKNVTEGLDRSLQTHENSAAVTGNSTKGADKEASPPGSAKDIVLEKVGEVK LEKDVETDARSHVAHTEKQKPEWETVTARKGEQVEENLECSEVHEPRGGPSPCRASST VMETEQPTRSRGSKLTVAEADEAEERTSTTSDAPATGGADADAKVEFDLNEGFNADEA KFGEPNNLTAPGCSPPVQLISPLPFPVSSVSSSLPASITVAAAAKGPFVPPDDLLRTK GVLGWKGSAATSAFRPAEPRKSLDMPLGTSNASMPDATTCKQSRPPLDIDLNVPDERV LEDLASRSSAQGTDSAPDLTNNRDLTCGLMGSAPIRSSGGLDLDLNRVDEPIDLGNHS TGSSRRLDVPMQPLKSSSGGILNGEASVRRDFDLNNGPAVDEVSAEPSLFSQHNRSSN VPSQPPVSSLRINNTEMANFSSWFPTGNTYSAVTIPSILPDRGEQPFPIVATGGPPRV LGPPTAATPFNPDVYRGPVLSSSPAVPFPSAPFQYPVFPFGTTFPLPSTSFSGGSTTY VDSSPSGRLCFPPVSQLLGPAGAVPSHYARPYVVSLPDGSNNSGAESGRKWGRQGLDL NAGPGGPDIEGRDETSPLASRQLSVASSQALAEEQARMYQVPGGILKRKEPEGGWDGY KQSSWQ" gene complement(409625..414129) /locus_tag="TCM_012004" /note="dbxref CacaoGD:Thecc1EG012004" mRNA complement(join(409625..410256,410920..411014, 411477..411542,411621..411685,411785..411829, 412978..413041,413118..413227,413349..413505, 413751..414129)) /locus_tag="TCM_012004" /product="RHO-related protein from plants 10 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042562" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034257t1" /inference="similar to AA sequence:Phytozome:Glyma04g35110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g7953t3" mRNA complement(join(409637..410256,410920..411014, 411477..411542,411621..411685,412978..413041, 413118..413227,413418..413505,413751..414007)) /locus_tag="TCM_012004" /product="Rac-like GTP-binding protein 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042562" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034257t1" /inference="similar to AA sequence:Phytozome:Glyma04g35110.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2872t11; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g7953t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc627t8" CDS complement(join(410217..410256,410920..411014, 411477..411542,411621..411685,412978..413041, 413118..413227,413418..413505,413751..413855)) /locus_tag="TCM_012004" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034257t1" /codon_start=1 /product="Rac-like GTP-binding protein 3 isoform 2" /protein_id="EOY20641.1" /db_xref="Phytozome:Glyma04g35110.1" /db_xref="TAIR:AT3G48040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6Z808" /translation="MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN FSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW IPELQHYAPGVPVVLVGTKLDLREDKHYLADHPGLLPVSTAQGEELRKQIGAAYYIEC SSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKPSRGCLINVFCGRNLVHLK" CDS complement(join(410217..410256,410920..411014, 411477..411542,411621..411685,411785..411829, 412978..413041,413118..413227,413349..413505, 413751..413855)) /locus_tag="TCM_012004" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG034257t1" /codon_start=1 /product="RHO-related protein from plants 10 isoform 1" /protein_id="EOY20640.1" /db_xref="Phytozome:Glyma04g35110.1" /db_xref="TAIR:AT3G48040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6Z808" /translation="MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN FSANVVVEGTTVNLGLWDTAGINSTSSFILHFLKTVLKGVSFYRQEDYNRLRPLSYRG ADVFVLAFSLVSRASYENVLKKWIPELQHYAPGVPVVLVGTKLGALLNWDSNDPCPSK DLREDKHYLADHPGLLPVSTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI KPPQKQKEKKKPSRGCLINVFCGRNLVHLK" gene 416972..424303 /locus_tag="TCM_012006" /note="dbxref CacaoGD:Thecc1EG012006" mRNA join(416972..418072,418655..418854,418950..419130, 419260..419451,420098..420330,421107..421208, 421331..421381,421474..421578,421677..422502, 422701..423107,423202..423383,424010..424303) /locus_tag="TCM_012006" /product="Protease Do-like 9 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29822.m003378" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016834t1" /inference="similar to AA sequence:Phytozome:Glyma17g09970.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc99t9; alternateUTRof:Thecc1EG012006t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g351t3" mRNA join(416972..418072,418655..418854,418950..419130, 419260..419451,420098..420330,421107..421208, 421331..421381,421474..421578,421677..422502, 422701..422856,422953..423107,423202..423383, 424010..424303) /locus_tag="TCM_012006" /product="Protease Do-like 9 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29822.m003378" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016834t1" /inference="similar to AA sequence:Phytozome:Glyma17g09970.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc99t14; alternateUTRof:Thecc1EG012006t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g351t3" mRNA join(416972..418072,418655..418854,418950..419130, 419260..419451,420098..420330,421107..421208, 421331..421381,421474..421578,421677..422485, 422691..422856,422953..423107,423202..423383, 424010..424303) /locus_tag="TCM_012006" /product="Protease Do-like 9 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29822.m003378" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016834t1" /inference="similar to AA sequence:Phytozome:Glyma17g09970.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc99t7; alternateUTRof:Thecc1EG012006t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g351t3" mRNA join(416972..418072,418655..418854,418950..419130, 419260..419451,420098..420330,421107..421208, 421331..421381,421474..421578,421677..422502, 422701..423107,423202..423441,423628..423739, 423839..423903,424013..424273) /locus_tag="TCM_012006" /product="Protease Do-like 9 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29822.m003378" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016834t1" /inference="similar to AA sequence:Phytozome:Glyma17g09970.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc96t10; alternateUTRof:Thecc1EG012006t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g351t3" mRNA join(416972..418072,418655..418854,418950..419130, 419260..419451,420098..420330,421107..421208, 421331..421381,421474..421578,421677..422485, 422691..422856,422953..423107,423202..423441, 423628..423739,423839..423903,424013..424273) /locus_tag="TCM_012006" /product="Protease Do-like 9 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29822.m003378" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016834t1" /inference="similar to AA sequence:Phytozome:Glyma17g09970.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc96t8; alternateUTRof:Thecc1EG012006t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g351t3" mRNA join(417246..418072,418655..418854,418950..419130, 419260..419451,420098..420330,421107..421208, 421331..421381,421474..421578,421677..423480) /locus_tag="TCM_012006" /product="Protease Do-like 9 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29822.m003378" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016834t1" /inference="similar to AA sequence:Phytozome:Glyma17g09970.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g351t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g351t3" CDS join(417466..418072,418655..418854,418950..419130, 419260..419451,420098..420330,421107..421208, 421331..421381,421474..421578,421677..421775) /locus_tag="TCM_012006" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016834t1" /codon_start=1 /product="Protease Do-like 9 isoform 1" /protein_id="EOY20642.1" /db_xref="Phytozome:Glyma17g09970.1" /db_xref="TAIR:AT5G40200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL12" /translation="MGDTKGKRGRKPKNPNPTETLESPSSNSALDDVFSVSNVEIIPS AATATTSTSSAAATTSARPRGRPRKLPKLPENPEPLPPQPTPAILSPGRRVPTGNAIG VGAGGGVGGESGGHSVGVRLVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVI GGRRVLTNAHSVEHYTQVKVKKRGSDTKYLATVLAIGTECDIAMLTVNDDEFWEGVSP VEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINS GNSGGPAFNDKGNCVGIAFQSLKHEDVENIGYVIPTPVIQHFIQDYEKNEAYTGFPIL GVEWQKMENPDLRAAMGMKIDQKGVRIRRVDPTAPESGVLKSSDIILSFDGVDIANDG TVPFRHGERIGFSYLVSQKYAGDSSAIKVLRNSEILNFNIKLASHRRLIPAHNKGRPP SYYIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLV ADTNIGYEDIVNTQVLAFNGKPVKNLKSLAEMVENCEDEFLKFDLEYEQMVVLRTKTA KAATPDILAMHCIPSAMSEDLKA" CDS join(417466..418072,418655..418854,418950..419130, 419260..419451,420098..420330,421107..421208, 421331..421381,421474..421578,421677..421775) /locus_tag="TCM_012006" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016834t1" /codon_start=1 /product="Protease Do-like 9 isoform 1" /protein_id="EOY20643.1" /db_xref="Phytozome:Glyma17g09970.1" /db_xref="TAIR:AT5G40200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL12" /translation="MGDTKGKRGRKPKNPNPTETLESPSSNSALDDVFSVSNVEIIPS AATATTSTSSAAATTSARPRGRPRKLPKLPENPEPLPPQPTPAILSPGRRVPTGNAIG VGAGGGVGGESGGHSVGVRLVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVI GGRRVLTNAHSVEHYTQVKVKKRGSDTKYLATVLAIGTECDIAMLTVNDDEFWEGVSP VEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINS GNSGGPAFNDKGNCVGIAFQSLKHEDVENIGYVIPTPVIQHFIQDYEKNEAYTGFPIL GVEWQKMENPDLRAAMGMKIDQKGVRIRRVDPTAPESGVLKSSDIILSFDGVDIANDG TVPFRHGERIGFSYLVSQKYAGDSSAIKVLRNSEILNFNIKLASHRRLIPAHNKGRPP SYYIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLV ADTNIGYEDIVNTQVLAFNGKPVKNLKSLAEMVENCEDEFLKFDLEYEQMVVLRTKTA KAATPDILAMHCIPSAMSEDLKA" CDS join(417466..418072,418655..418854,418950..419130, 419260..419451,420098..420330,421107..421208, 421331..421381,421474..421578,421677..421775) /locus_tag="TCM_012006" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG016834t1" /codon_start=1 /product="Protease Do-like 9 isoform 1" /protein_id="EOY20644.1" /db_xref="Phytozome:Glyma17g09970.1" /db_xref="TAIR:AT5G40200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL12" /translation="MGDTKGKRGRKPKNPNPTETLESPSSNSALDDVFSVSNVEIIPS AATATTSTSSAAATTSARPRGRPRKLPKLPENPEPLPPQPTPAILSPGRRVPTGNAIG VGAGGGVGGESGGHSVGVRLVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVI GGRRVLTNAHSVEHYTQVKVKKRGSDTKYLATVLAIGTECDIAMLTVNDDEFWEGVSP VEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINS GNSGGPAFNDKGNCVGIAFQSLKHEDVENIGYVIPTPVIQHFIQDYEKNEAYTGFPIL GVEWQKMENPDLRAAMGMKIDQKGVRIRRVDPTAPESGVLKSSDIILSFDGVDIANDG TVPFRHGERIGFSYLVSQKYAGDSSAIKVLRNSEILNFNIKLASHRRLIPAHNKGRPP SYYIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLV ADTNIGYEDIVNTQVLAFNGKPVKNLKSLAEMVENCEDEFLKFDLEYEQMVVLRTKTA KAATPDILAMHCIPSAMSEDLKA" CDS join(417466..418072,418655..418854,418950..419130, 419260..419451,420098..420330,421107..421208, 421331..421381,421474..421578,421677..421775) /locus_tag="TCM_012006" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG016834t1" /codon_start=1 /product="Protease Do-like 9 isoform 1" /protein_id="EOY20645.1" /db_xref="Phytozome:Glyma17g09970.1" /db_xref="TAIR:AT5G40200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL12" /translation="MGDTKGKRGRKPKNPNPTETLESPSSNSALDDVFSVSNVEIIPS AATATTSTSSAAATTSARPRGRPRKLPKLPENPEPLPPQPTPAILSPGRRVPTGNAIG VGAGGGVGGESGGHSVGVRLVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVI GGRRVLTNAHSVEHYTQVKVKKRGSDTKYLATVLAIGTECDIAMLTVNDDEFWEGVSP VEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINS GNSGGPAFNDKGNCVGIAFQSLKHEDVENIGYVIPTPVIQHFIQDYEKNEAYTGFPIL GVEWQKMENPDLRAAMGMKIDQKGVRIRRVDPTAPESGVLKSSDIILSFDGVDIANDG TVPFRHGERIGFSYLVSQKYAGDSSAIKVLRNSEILNFNIKLASHRRLIPAHNKGRPP SYYIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLV ADTNIGYEDIVNTQVLAFNGKPVKNLKSLAEMVENCEDEFLKFDLEYEQMVVLRTKTA KAATPDILAMHCIPSAMSEDLKA" CDS join(417466..418072,418655..418854,418950..419130, 419260..419451,420098..420330,421107..421208, 421331..421381,421474..421578,421677..421775) /locus_tag="TCM_012006" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG016834t1" /codon_start=1 /product="Protease Do-like 9 isoform 1" /protein_id="EOY20646.1" /db_xref="Phytozome:Glyma17g09970.1" /db_xref="TAIR:AT5G40200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL12" /translation="MGDTKGKRGRKPKNPNPTETLESPSSNSALDDVFSVSNVEIIPS AATATTSTSSAAATTSARPRGRPRKLPKLPENPEPLPPQPTPAILSPGRRVPTGNAIG VGAGGGVGGESGGHSVGVRLVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVI GGRRVLTNAHSVEHYTQVKVKKRGSDTKYLATVLAIGTECDIAMLTVNDDEFWEGVSP VEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINS GNSGGPAFNDKGNCVGIAFQSLKHEDVENIGYVIPTPVIQHFIQDYEKNEAYTGFPIL GVEWQKMENPDLRAAMGMKIDQKGVRIRRVDPTAPESGVLKSSDIILSFDGVDIANDG TVPFRHGERIGFSYLVSQKYAGDSSAIKVLRNSEILNFNIKLASHRRLIPAHNKGRPP SYYIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLV ADTNIGYEDIVNTQVLAFNGKPVKNLKSLAEMVENCEDEFLKFDLEYEQMVVLRTKTA KAATPDILAMHCIPSAMSEDLKA" CDS join(417466..418072,418655..418854,418950..419130, 419260..419451,420098..420330,421107..421208, 421331..421381,421474..421578,421677..421775) /locus_tag="TCM_012006" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG016834t1" /codon_start=1 /product="Protease Do-like 9 isoform 1" /protein_id="EOY20647.1" /db_xref="Phytozome:Glyma17g09970.1" /db_xref="TAIR:AT5G40200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL12" /translation="MGDTKGKRGRKPKNPNPTETLESPSSNSALDDVFSVSNVEIIPS AATATTSTSSAAATTSARPRGRPRKLPKLPENPEPLPPQPTPAILSPGRRVPTGNAIG VGAGGGVGGESGGHSVGVRLVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVI GGRRVLTNAHSVEHYTQVKVKKRGSDTKYLATVLAIGTECDIAMLTVNDDEFWEGVSP VEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINS GNSGGPAFNDKGNCVGIAFQSLKHEDVENIGYVIPTPVIQHFIQDYEKNEAYTGFPIL GVEWQKMENPDLRAAMGMKIDQKGVRIRRVDPTAPESGVLKSSDIILSFDGVDIANDG TVPFRHGERIGFSYLVSQKYAGDSSAIKVLRNSEILNFNIKLASHRRLIPAHNKGRPP SYYIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLV ADTNIGYEDIVNTQVLAFNGKPVKNLKSLAEMVENCEDEFLKFDLEYEQMVVLRTKTA KAATPDILAMHCIPSAMSEDLKA" gene complement(421127..424427) /locus_tag="TCM_012007" /note="dbxref CacaoGD:Thecc1EG012007" mRNA complement(join(421127..421206,421329..421378, 421471..421575,421674..422500,422699..422850, 422947..423105,423200..423434,423622..423738, 423839..423901,424011..424229)) /locus_tag="TCM_012007" /product="Nodulin MtN21 /EamA-like transporter family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene32153" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010293t4" /inference="similar to AA sequence:frave:gene32153" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00102t00014; inference alignment:Newbler:10:TSA:cgbaB_g03167t00001" mRNA complement(join(421620..422500,422699..422850, 422947..423105,423200..423434,423622..423738, 423839..423901,424011..424427)) /locus_tag="TCM_012007" /product="Nodulin MtN21 /EamA-like transporter family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene32153" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010293t4" /inference="similar to AA sequence:frave:gene32153" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03167t00001" CDS complement(join(422353..422500,422699..422850, 422947..423105,423200..423434,423622..423738, 423839..423901,424011..424276)) /locus_tag="TCM_012007" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene32153; paralog of Thecc1EG010293t4" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein isoform 1" /protein_id="EOY20648.1" /db_xref="TAIR:AT5G40240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEN9" /translation="MTCNSNLSLSVPSSLERERKMRVREMRVRSWLVELAPFAAMVAV ECLDVGLTTLSKAAMSKGMSHFVFVVYSNALASVILIPAAFFFTRKKRPPITLPLLCK FFLLSIAGITLMQNCVFTGVSYSSPTLASALGNLVPAFTFLLAVIFRMEKLELTSSRS QIKILGTLVSISGALIMTLYKGSAVLSPPAQPQSDPSAMLTTTNNWIIGGLFLATACL SLSTNIIGQAAILKGYPSEIVLVSFYCFFGTIQCALVALVAERNTNAWKLSPDIELVS VVYSALFGSVVTFAVLAWCIRRKGPVFVAMFKPLSIAIAAFLGFIFLGETLYVGSIVG AAIIVTGFYGVIWAQSKEEEDEVANIHKLHSSSSKIPLLHGHLDA" CDS complement(join(422353..422500,422699..422850, 422947..423105,423200..423434,423622..423738, 423839..423901,424011..424216)) /locus_tag="TCM_012007" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene32153; paralog of Thecc1EG010293t4" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein isoform 2" /protein_id="EOY20649.1" /db_xref="TAIR:AT5G40240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEN9" /translation="MRVREMRVRSWLVELAPFAAMVAVECLDVGLTTLSKAAMSKGMS HFVFVVYSNALASVILIPAAFFFTRKKRPPITLPLLCKFFLLSIAGITLMQNCVFTGV SYSSPTLASALGNLVPAFTFLLAVIFRMEKLELTSSRSQIKILGTLVSISGALIMTLY KGSAVLSPPAQPQSDPSAMLTTTNNWIIGGLFLATACLSLSTNIIGQAAILKGYPSEI VLVSFYCFFGTIQCALVALVAERNTNAWKLSPDIELVSVVYSALFGSVVTFAVLAWCI RRKGPVFVAMFKPLSIAIAAFLGFIFLGETLYVGSIVGAAIIVTGFYGVIWAQSKEEE DEVANIHKLHSSSSKIPLLHGHLDA" mobile_element complement(429582..429594) /note="source:CACAO_M_S_E100312_F82_scaffold_9 6572 6583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(435756..435813) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3099 3159" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 436368..438991 /locus_tag="TCM_012008" /note="dbxref CacaoGD:Thecc1EG012008" mRNA join(436368..436492,436582..436612,437634..437687, 437793..437808,438093..438991) /locus_tag="TCM_012008" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g157t2" CDS join(436593..436612,437634..437687,437793..437808, 438093..438242) /locus_tag="TCM_012008" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20650.1" /translation="MKTKRLRNESSAFLGPKRYVRYVELLMIFAGGGQYSSMASRLNC LLFALFLCSSSIQISLEIIYILPFLITFFVVNDLI" gene complement(436945..438955) /locus_tag="TCM_012009" /note="dbxref CacaoGD:Thecc1EG012009" mRNA complement(join(436945..437151,437409..437457, 437568..437652,438508..438669,438760..438955)) /locus_tag="TCM_012009" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage" CDS complement(join(437004..437151,437409..437457, 437568..437652,438508..438669,438760..438885)) /locus_tag="TCM_012009" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20651.1" /translation="MNLLNLALNHLPSPCPPPPQIVEHRRPFNCYCLSYSTSNISQAT ILKGYSSKITLLSFYCLFGFVQCTMVTLIPERNNLDAWKLSLEIEFISIICFEGRAFV SVSRVACQSQEEHQSKTSIESSCCNWKYGIEWRIGMVHTYIIGAVIIFIGFYGAIWAR SKEEKEVTSIDKPQVSSSETPLLNAHAHP" mobile_element 438922..444924 /note="source:INTACT746_F84_scaffold_2-int 3 6082" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 445316..446753 /note="source:CACAO_M_E12110_F9_scaffold_3 1 1438" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 446851..447316 /locus_tag="TCM_012011" /note="dbxref CacaoGD:Thecc1EG012011" mRNA 446851..447316 /locus_tag="TCM_012011" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2697t1" CDS 446892..447101 /locus_tag="TCM_012011" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20652.1" /translation="MLKRKNLQSKDKVIGGLLFLHEKNQKSKTEISNDDNDHNQDVSD IYDAKEDLVRKKAEGRKMTDAKAFE" gene 447976..450433 /locus_tag="TCM_012012" /note="dbxref CacaoGD:Thecc1EG012012" mRNA join(447976..448181,449921..450433) /locus_tag="TCM_012012" /product="Hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g01970.1" /inference="similar to AA sequence:TAIR:AT3G48030.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g212t1" CDS join(448106..448181,449921..450093) /locus_tag="TCM_012012" /codon_start=1 /product="Hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein" /protein_id="EOY20653.1" /db_xref="TAIR:AT3G48030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7X843" /translation="MGAVEPSLEEFLEEKKRVRNPLVPVGALITAGVLTAGLISFRQG NSRLGQVLMRARVVVQGATVALMVGTAYYYGDNPWKSR" gene 451255..451726 /locus_tag="TCM_012013" /note="dbxref CacaoGD:Thecc1EG012013" mRNA 451255..451726 /locus_tag="TCM_012013" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 451279..451542 /locus_tag="TCM_012013" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20654.1" /translation="MGVNACLAMCSCCLNGRKKLQLGVNSRRHRRQWGSGSVKTKVLK LQRVVPRSHGLHLDQLLVHTADYISQLRLQVSVLEDLVKFHEP" gene 452858..454717 /locus_tag="TCM_012014" /note="dbxref CacaoGD:Thecc1EG012014" mRNA join(452858..453053,453398..454717) /locus_tag="TCM_012014" /product="F-box and associated interaction domains-containing-like protein" /inference="similar to AA sequence:TAIR:AT5G65850.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1358t2" CDS 453446..454558 /locus_tag="TCM_012014" /codon_start=1 /product="F-box and associated interaction domains-containing-like protein" /protein_id="EOY20655.1" /db_xref="TAIR:AT5G65850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHP3" /translation="METRKQIPFDVIFDIFTDLPVKSLVRFRCVSRICSSIITCQDFA KMHSSPYSRIKSRSLLTPTIIISCSTELQSAQMFFSAELHEGSVSVSAVHLRTIPPRF SRYTTPSVNGIICMDFGLCATIFNPSTRQAITLPFVCPPNSPAAASTSFCVNSFGFDP ITECYKVLNTWAVSGKATEYRVYTLGTNNSWRLLGGGPSHSPKRESVCIDGIIYFKCH HSSVLIAFHLHMEKFHEIRLPERVFNWRSDLIQFAGRLALVDTQFDSQSNSINIWLLE DHLRNEWIGHSITFPTFWKEIDGYKNFLVVGTIHTGEILLAPCTLLKHFCVYIYDLHR RMRRIELSGLPEQRPLDFSSNAVKVTNYEQNILCLA" mobile_element complement(455366..459742) /note="source:INTACT237_F179_scaffold_7-int 207 4593" /mobile_element_type="retrotransposon:LTR/Copia" gene 468719..473916 /locus_tag="TCM_012016" /note="dbxref CacaoGD:Thecc1EG012016" mRNA join(468719..468856,470737..470806,472199..472278, 472451..472565,472836..472888,473100..473228, 473454..473888) /locus_tag="TCM_012016" /product="Ubiquitin-conjugating enzyme E2 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g09940.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016288t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08470.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b011600t1a2; alternateUTRof:Thecc1EG012016t1; inference alignment:Newbler:10:TSA:cgbaP1_g06213t00001" mRNA join(468736..468856,470733..470806,472199..472278, 472451..472565,472836..472888,473100..473228, 473454..473840) /locus_tag="TCM_012016" /product="Ubiquitin-conjugating enzyme E2 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g09940.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016288t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08470.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06213t00001; inference alignment:Newbler:10:TSA:cgbaP1_g06213t00001" CDS join(470763..470806,472199..472278,472451..472565, 472836..472888,473100..473228,473454..473587) /locus_tag="TCM_012016" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016288t1" /codon_start=1 /product="Ubiquitin-conjugating enzyme E2 5 isoform 1" /protein_id="EOY20656.1" /db_xref="Phytozome:POPTR_0015s08470.1" /db_xref="TAIR:AT1G63800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42749" /translation="MSSPSKRREMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLY EGGVWKIRVELPDAYPYKSPSIGFMNKIFHPNVDEMSGSVCLDVINQSWSPMFDLLNI FEVFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENITKSTADEE SDEEDVTDEESKSSDDEIAGHADP" CDS join(470763..470806,472199..472278,472451..472565, 472836..472888,473100..473228,473454..473587) /locus_tag="TCM_012016" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016288t1" /codon_start=1 /product="Ubiquitin-conjugating enzyme E2 5 isoform 1" /protein_id="EOY20657.1" /db_xref="Phytozome:POPTR_0015s08470.1" /db_xref="TAIR:AT1G63800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42749" /translation="MSSPSKRREMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLY EGGVWKIRVELPDAYPYKSPSIGFMNKIFHPNVDEMSGSVCLDVINQSWSPMFDLLNI FEVFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENITKSTADEE SDEEDVTDEESKSSDDEIAGHADP" mRNA join(471019..471047,472199..472278,472451..472565, 472836..472888,473100..473228,473454..473916) /locus_tag="TCM_012016" /product="Ubiquitin-conjugating enzyme E2 5 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g09940.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016288t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08470.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc828t2; inference alignment:Newbler:10:TSA:cgbaP1_g06213t00001" CDS join(472200..472278,472451..472565,472836..472888, 473100..473228,473454..473587) /locus_tag="TCM_012016" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG016288t1" /codon_start=1 /product="Ubiquitin-conjugating enzyme E2 5 isoform 3" /protein_id="EOY20658.1" /db_xref="Phytozome:POPTR_0015s08470.1" /db_xref="TAIR:AT1G63800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42749" /translation="MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAY PYKSPSIGFMNKIFHPNVDEMSGSVCLDVINQSWSPMFDLLNIFEVFLPQLLLYPNPS DPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENITKSTADEESDEEDVTDEESKSSD DEIAGHADP" gene 474474..477385 /locus_tag="TCM_012019" /note="dbxref CacaoGD:Thecc1EG012019" mRNA join(474474..475851,476067..477385) /locus_tag="TCM_012019" /product="Leucine-rich repeat protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007793001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016847t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08480.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3016t1" CDS join(474561..475851,476067..476647) /locus_tag="TCM_012019" /note="paralog of Thecc1EG016847t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY20659.1" /db_xref="Phytozome:POPTR_0015s08480.1" /db_xref="TAIR:AT2G26730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5XBE6" /translation="MNPVSIRVLPIFIFLLFHVSNSEDEEVKQSLVEFLDKLAAGNVE RGQSWGWNMTSDPCKDNWKGVSCDLKLQSVKKVVLDELNLTGVLDIGSVCRASSLSVL SLNKNNVVGLISEEIGNCKRLTHLYLSGNQLSGDLPEPLKQLSNLKRFDISFNNFSGE VPDLSRISGLVTFLAQNNQLSGEIPNLDFSNLRRFNVSNNNFSGPIPDVKSRFSADSF SGNPELCGELVSKACPPSAAPPSTRKSKDSSSKDFLIYFGYAALGLIIVLLVAYKLVR KKKPKEEKSEAVKKGVEAKTSSTSNESKTTEHKSEYSISSAESGVALSSLVVLSSPTA QGLRFEDLLRAPAELLGKGKHGSLYKVMLDNGVTTLAVKRIKDWSVTSEDFKSRMQRL DQARHPNVLPSVAFYCSKQEKLLVYEYQPNGSLFRLLHGSQNGQAFNWGSRLNVAASV AKALAFMHEELREDGIAHGNLKSTNILIDKNMDPCISEYGLMVYDSQDQTFHSPSNSF IINNDSDHGQTYGSFQADIYGFGVILLELLTGKLVQNNGFDLARWVHSVVREEWTVEV FDKDLILEGASEERMLNLLQIALKCINPDPHERPSINQVAVMINTLKDEEDRSSSEP" mobile_element 476890..477481 /note="source:INTACT67_F28_scaffold_2-int 1 598" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 477436..482104 /locus_tag="TCM_012020" /note="dbxref CacaoGD:Thecc1EG012020" mRNA join(477436..477596,480526..480611,480768..482104) /locus_tag="TCM_012020" /product="RING/U-box superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007793001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010278t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07960.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g189t1" mobile_element 477769..477821 /note="source:CACAO_M_S_E89247_F225_scaffold_8 4340 4392" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 478362..479037 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17248 17966" /mobile_element_type="retrotransposon:LTR/Copia" CDS 480931..482031 /locus_tag="TCM_012020" /note="paralog of Thecc1EG010278t1" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY20660.1" /db_xref="Phytozome:POPTR_0012s07960.1" /db_xref="TAIR:AT5G40250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I378" /translation="MLKMSRITNEIKQMMYPPPVSPLSSFPTPNYYNIDYYESSPPSP SIRISPVLLLIIVIFAVIFFIAGLLHLLVRFLIKRPSFSPIYQSNRYPGNSESHGLQR QLQQLFRLHDSGLDQSVIDSLPVFYYKDIMGLKEPFDCAVCLCEYSDQDKLRLLPMCS HAFHIDCIDTWLLSNSTCPLCRGTLSGSSLPLENPMFQCEYLRVISNGVESDGENGIS CSQKPAAATEDVSEKRIFSVRLGKFRSINDGESGGGRVLQGEISSCNLDARRCYSMGA YQYVVGDSLQVTLSPDVSHGKLVEGKGEDGSSSIDGDVEEKRIRRTKGESFSVSKIWL WSKRSRFTASSDNHADVYLNVSLPRNDRTQAV" gene complement(482130..483451) /locus_tag="TCM_012021" /note="dbxref CacaoGD:Thecc1EG012021" mRNA complement(482130..483451) /locus_tag="TCM_012021" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.68 coverage" CDS complement(482534..482947) /locus_tag="TCM_012021" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20661.1" /translation="MVISDKKLTPSGIYRGIQSSSYRCIFGGCEILRKLLLMELDNHD CAFKQWSPHQLHLLLSCSLRKLSSLASNARYFALSGWEHFSLVGFASQLNWKTQKIQE PLEKVKPQVSNHSYYQSQHQTKICRFSVRFQCCFR" mobile_element 483601..483676 /note="source:CACAO_M_E42369_F96_scaffold_5 700 768" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 483764..490283 /locus_tag="TCM_012022" /note="dbxref CacaoGD:Thecc1EG012022" mRNA join(483764..484665,486056..487959,488250..488400, 488475..489559) /locus_tag="TCM_012022" /product="RNA-dependent RNA polymerase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08500.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007792001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1081t9" mRNA join(483825..484665,486056..487959,488250..488400, 488475..490146,490255..490283) /locus_tag="TCM_012022" /product="RNA-dependent RNA polymerase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08500.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007792001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc751t18; alternateUTRof:Thecc1EG012022t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1081t9" CDS join(484111..484665,486056..487959,488250..488400, 488475..489314) /locus_tag="TCM_012022" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA-dependent RNA polymerase 2 isoform 1" /protein_id="EOY20662.1" /db_xref="Phytozome:GSVIVT01007792001" /db_xref="TAIR:AT4G11130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82504" /translation="MRRELIGAMERERPTLRVTNVPQTAIAKDLLEFLEYKLGTDTVF AIEISTDRNNWKSRGFGRVQFATLEAKSKAHLLSLRNDLVFKSHSLKLSETYDDIIPR PIRADHRLDGGVLHVGFMVQDDYLRVLERWEDVRGWLMPERRRLEFWLWNNGECYKLE VLFDDVLETVGCCFNGSSCNALLLRVKYAPRIYQKVSGPNIASKLRPDRYHICKENFD FLWVRTTDFSRTKAVGQSTAFYWEINAELLTLDLFSCFSCYREDMKGLTLKGGGEFSS APEIVPLVKGPSDSKLAYEILFQLNSLVHTQKISIASVDTDLIDILRVLAVETAVMIL QKFHKLLSTCYNPVSFVKENLPVSERNFQSRPLSSFKRLIDHNVMSCHRALVTPSKIY CLGPELETSNYVVKNFAEYASDFMRVSFVEEDWGKLSANAISTSVQLGIFSKPFRTKI YHRILSVLQHGIVIGDKRFEFLAFSASQLRSNSVWMFASNDKVTAEDVREWMGCFKKI RSVSKCAARMGQLFSSSLPTLVVPVQDVKIIPDIEVTSDGINYCFSDGIGKISLPFAR EVAQKCGLNDTPSAFQIRYGGYKGVVAVDRNSFRKMSLRGSMHKFESKIRMLNVTKWS ESMPCFLNREIVTLLSTLGIKDEAFETLQQEQLHLLGQMLTNREAALDVLQSLCGADS QNILVKMLLQGYEPNVEPYLSMMLLANHVSLLSDLKCRCRIYVPKGQVLVGCLDETAT LNYGQVYVRLSIKKAELEHADQNFFHKVDEKTAIVIGKVVVTKNPCLHPGDVRVLEAV YEAELEDKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTDAPMDYT GSRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPDKARSEKCLELATL HSMAVDFAKTGAPAEMPRSLKPREFPDFMQRVDKPMYASLGVLGKLYRATINSTVQER SKFVWSKKMAEALYDHDLEVNGFEAFLSTAQTHKDMYEEKMSFLMNYYEVESEDEILT GNMRNKATFLQRDNRRYGDMKDRILLSMKNLQREARERFENSCKVGEHQRLASAWYHV TYHPNYCQESMKSCLSFPWIVGDILLKIKSVNSREIQREQPVFSHVYHKSPRRPATRD ESM" CDS join(484111..484665,486056..487959,488250..488400, 488475..489314) /locus_tag="TCM_012022" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA-dependent RNA polymerase 2 isoform 1" /protein_id="EOY20663.1" /db_xref="Phytozome:GSVIVT01007792001" /db_xref="TAIR:AT4G11130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82504" /translation="MRRELIGAMERERPTLRVTNVPQTAIAKDLLEFLEYKLGTDTVF AIEISTDRNNWKSRGFGRVQFATLEAKSKAHLLSLRNDLVFKSHSLKLSETYDDIIPR PIRADHRLDGGVLHVGFMVQDDYLRVLERWEDVRGWLMPERRRLEFWLWNNGECYKLE VLFDDVLETVGCCFNGSSCNALLLRVKYAPRIYQKVSGPNIASKLRPDRYHICKENFD FLWVRTTDFSRTKAVGQSTAFYWEINAELLTLDLFSCFSCYREDMKGLTLKGGGEFSS APEIVPLVKGPSDSKLAYEILFQLNSLVHTQKISIASVDTDLIDILRVLAVETAVMIL QKFHKLLSTCYNPVSFVKENLPVSERNFQSRPLSSFKRLIDHNVMSCHRALVTPSKIY CLGPELETSNYVVKNFAEYASDFMRVSFVEEDWGKLSANAISTSVQLGIFSKPFRTKI YHRILSVLQHGIVIGDKRFEFLAFSASQLRSNSVWMFASNDKVTAEDVREWMGCFKKI RSVSKCAARMGQLFSSSLPTLVVPVQDVKIIPDIEVTSDGINYCFSDGIGKISLPFAR EVAQKCGLNDTPSAFQIRYGGYKGVVAVDRNSFRKMSLRGSMHKFESKIRMLNVTKWS ESMPCFLNREIVTLLSTLGIKDEAFETLQQEQLHLLGQMLTNREAALDVLQSLCGADS QNILVKMLLQGYEPNVEPYLSMMLLANHVSLLSDLKCRCRIYVPKGQVLVGCLDETAT LNYGQVYVRLSIKKAELEHADQNFFHKVDEKTAIVIGKVVVTKNPCLHPGDVRVLEAV YEAELEDKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTDAPMDYT GSRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPDKARSEKCLELATL HSMAVDFAKTGAPAEMPRSLKPREFPDFMQRVDKPMYASLGVLGKLYRATINSTVQER SKFVWSKKMAEALYDHDLEVNGFEAFLSTAQTHKDMYEEKMSFLMNYYEVESEDEILT GNMRNKATFLQRDNRRYGDMKDRILLSMKNLQREARERFENSCKVGEHQRLASAWYHV TYHPNYCQESMKSCLSFPWIVGDILLKIKSVNSREIQREQPVFSHVYHKSPRRPATRD ESM" gene complement(489565..490453) /locus_tag="TCM_012023" /note="dbxref CacaoGD:Thecc1EG012023" mRNA complement(489565..490453) /locus_tag="TCM_012023" /product="Serine/arginine repetitive matrix protein 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016850t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08510.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1081t10" CDS complement(489827..490351) /locus_tag="TCM_012023" /note="paralog of Thecc1EG016850t1" /codon_start=1 /product="Serine/arginine repetitive matrix protein 2, putative" /protein_id="EOY20664.1" /db_xref="Phytozome:POPTR_0015s08510.1" /db_xref="TAIR:AT5G14890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PG20" /translation="MAAHRDLEPPIFEETTSNSLLRNTRCCFCFPCFSSRRTPTVGLA FWERIRTAQVQSSTSLWARSVRAFRKVREWSEIVAGPRWKTFIRRFNRSKSGSGSVGD GRHGQFHYDPLSYALNFDEGPGQNGNFVDDIDYGGFRAFSTRYASVSGSEKPLSAPTS SSSLEVGKDAAVFA" gene 490998..491946 /locus_tag="TCM_012024" /note="dbxref CacaoGD:Thecc1EG012024" mRNA 490998..491946 /locus_tag="TCM_012024" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage" CDS 491273..491581 /locus_tag="TCM_012024" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20665.1" /translation="MLQLLACSVLRFYGPDNNNCISFRTGRPDGMTNLCFFLSQFTPY NEFSKPMSANPDTRSCTACFELAHRGKQYHIWNSFHLVHCGLTYCDMDQTELTLIISK " gene complement(492187..493488) /locus_tag="TCM_012025" /note="dbxref CacaoGD:Thecc1EG012025" mRNA complement(join(492187..492692,493073..493161, 493308..493488)) /locus_tag="TCM_012025" /product="Ribonuclease III family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007790001" /inference="similar to AA sequence:Phytozome:GSVIVT01007790001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g7969t2" CDS complement(join(492287..492692,493073..493161, 493308..493382)) /locus_tag="TCM_012025" /codon_start=1 /product="Ribonuclease III family protein, putative" /protein_id="EOY20666.1" /db_xref="Phytozome:GSVIVT01007790001" /db_xref="TAIR:AT1G24450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T5A2" /translation="MQLRGSTLFSVITILLFTLFSSVPQAYAAGNYEDQSLKPLPPFS QALETLQNQIGYTFKSIGLLRRAMTHSSFSEENNKALSILGTHVIETSVSLHSLVKDI DMSPKELNNLILEITKVDSSCAVDGTRLGLQKVVRVSRKTAPSSPTIVCGAFRAIFGA IALDSMNTDEAGNIFWSIHSGKAQRAVSL" gene complement(494167..501598) /locus_tag="TCM_012026" /note="dbxref CacaoGD:Thecc1EG012026" mRNA complement(join(494167..495198,495297..495570, 495840..497951,499578..499729,500977..501048, 501285..501381)) /locus_tag="TCM_012026" /product="Trehalose-phosphatase/synthase 9 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013978" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010274t1" /inference="similar to AA sequence:ricco:30147.m013978" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2302t1" mRNA complement(join(494203..494691,495150..495198, 495297..495570,495840..497951,500977..501048, 501285..501598)) /locus_tag="TCM_012026" /product="Trehalose-phosphatase/synthase 9 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m013978" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010274t1" /inference="similar to AA sequence:ricco:30147.m013978" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1360t2; alternateUTRof:Thecc1EG012026t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2302t1" mRNA complement(join(494203..494691,495150..495198, 495297..495570,495840..497951,499578..499817, 500977..501048,501285..501598)) /locus_tag="TCM_012026" /product="Trehalose-phosphatase/synthase 9 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m013978" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010274t1" /inference="similar to AA sequence:ricco:30147.m013978" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2265t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2302t1" CDS complement(join(494537..494691,495150..495198, 495297..495570,495840..497830)) /locus_tag="TCM_012026" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013978; paralog of Thecc1EG010274t1" /codon_start=1 /product="Trehalose-phosphatase/synthase 9 isoform 2" /protein_id="EOY20668.1" /db_xref="TAIR:AT1G23870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23617" /translation="MMVSRSCISLLDLASGDIFNLPQTPRKIQRVMTVPGIISKVDGN RSNDGDFDALSSDGCEKKIIVANFLPIHAQKDLKSGRWSFSFDEDSLLLQMKDGFSSD TDVVYVGSLKVDVDSSEQDEISRRLLEEFNCVPTFLPPELQKKFYHGFCKQYLWPLFH YMLPMCPDYCNRFDRLLWQAYVSANKIFADKVMEVINPEDDFVWVHDYHLMILPTFLR KRFYRVKLGFFLHSPFPSSEIYRTLPVRDEILKALLNADLIGFHTFDYARHFLSCCSR MLGLDYESKRGHIGLDYFGRTVYIKILPVGIHMGRLQSALNHPSSSTKVKEIVEQFKG KKLIVGVDDMDIFKGISLKVLAMEQLLQQHRELRGKIVLVQIVNPARSTGKDVQEAKR ETYETTKRINDNFGFPGYEPVVLIDRRVPFYEKTAYYALAECCIVNAVRDGMNLVPYK YIVCRQGTSKMDEALEIASESPRMSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALN MAIRMPDVEKQLRHEKHYRYVSSHDVAYWARSFMQDLERACKEHYSKRCWGIGFGLSF RILSLSPSFRKLSIDHIVSAYKRTCRRSIFLDYDGTVVPHASIIKSPSPEVISVLNNL CSDPKNTVFIVSGRGQNSLSDWFAQCENLGIAAEHGYFIRWSRMSDWETIPIAADFDW KRIAEPVMKLYTEATDGSYIEPKKSALVWHHQDADPDFGSCQAKELLDHLENVLANEP VVVKRGQQIVEVKPQGVTKGFVAEKILSTMIEMETQMLVIMVNLLVALEINNHWTFTL SRYFDRWLLVGVSIFGCRADTSRS" CDS complement(join(494537..494691,495150..495198, 495297..495570,495840..497830)) /locus_tag="TCM_012026" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m013978; paralog of Thecc1EG010274t1" /codon_start=1 /product="Trehalose-phosphatase/synthase 9 isoform 2" /protein_id="EOY20669.1" /db_xref="TAIR:AT1G23870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23617" /translation="MMVSRSCISLLDLASGDIFNLPQTPRKIQRVMTVPGIISKVDGN RSNDGDFDALSSDGCEKKIIVANFLPIHAQKDLKSGRWSFSFDEDSLLLQMKDGFSSD TDVVYVGSLKVDVDSSEQDEISRRLLEEFNCVPTFLPPELQKKFYHGFCKQYLWPLFH YMLPMCPDYCNRFDRLLWQAYVSANKIFADKVMEVINPEDDFVWVHDYHLMILPTFLR KRFYRVKLGFFLHSPFPSSEIYRTLPVRDEILKALLNADLIGFHTFDYARHFLSCCSR MLGLDYESKRGHIGLDYFGRTVYIKILPVGIHMGRLQSALNHPSSSTKVKEIVEQFKG KKLIVGVDDMDIFKGISLKVLAMEQLLQQHRELRGKIVLVQIVNPARSTGKDVQEAKR ETYETTKRINDNFGFPGYEPVVLIDRRVPFYEKTAYYALAECCIVNAVRDGMNLVPYK YIVCRQGTSKMDEALEIASESPRMSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALN MAIRMPDVEKQLRHEKHYRYVSSHDVAYWARSFMQDLERACKEHYSKRCWGIGFGLSF RILSLSPSFRKLSIDHIVSAYKRTCRRSIFLDYDGTVVPHASIIKSPSPEVISVLNNL CSDPKNTVFIVSGRGQNSLSDWFAQCENLGIAAEHGYFIRWSRMSDWETIPIAADFDW KRIAEPVMKLYTEATDGSYIEPKKSALVWHHQDADPDFGSCQAKELLDHLENVLANEP VVVKRGQQIVEVKPQGVTKGFVAEKILSTMIEMETQMLVIMVNLLVALEINNHWTFTL SRYFDRWLLVGVSIFGCRADTSRS" CDS complement(join(494875..495198,495297..495570, 495840..497830)) /locus_tag="TCM_012026" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013978; paralog of Thecc1EG010274t1" /codon_start=1 /product="Trehalose-phosphatase/synthase 9 isoform 1" /protein_id="EOY20667.1" /db_xref="TAIR:AT1G23870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23617" /translation="MMVSRSCISLLDLASGDIFNLPQTPRKIQRVMTVPGIISKVDGN RSNDGDFDALSSDGCEKKIIVANFLPIHAQKDLKSGRWSFSFDEDSLLLQMKDGFSSD TDVVYVGSLKVDVDSSEQDEISRRLLEEFNCVPTFLPPELQKKFYHGFCKQYLWPLFH YMLPMCPDYCNRFDRLLWQAYVSANKIFADKVMEVINPEDDFVWVHDYHLMILPTFLR KRFYRVKLGFFLHSPFPSSEIYRTLPVRDEILKALLNADLIGFHTFDYARHFLSCCSR MLGLDYESKRGHIGLDYFGRTVYIKILPVGIHMGRLQSALNHPSSSTKVKEIVEQFKG KKLIVGVDDMDIFKGISLKVLAMEQLLQQHRELRGKIVLVQIVNPARSTGKDVQEAKR ETYETTKRINDNFGFPGYEPVVLIDRRVPFYEKTAYYALAECCIVNAVRDGMNLVPYK YIVCRQGTSKMDEALEIASESPRMSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALN MAIRMPDVEKQLRHEKHYRYVSSHDVAYWARSFMQDLERACKEHYSKRCWGIGFGLSF RILSLSPSFRKLSIDHIVSAYKRTCRRSIFLDYDGTVVPHASIIKSPSPEVISVLNNL CSDPKNTVFIVSGRGQNSLSDWFAQCENLGIAAEHGYFIRWSRMSDWETIPIAADFDW KRIAEPVMKLYTEATDGSYIEPKKSALVWHHQDADPDFGSCQAKELLDHLENVLANEP VVVKRGQQIVEVKPQGVTKGFVAEKILSTMIGNGKLPDFVMCIGDDRSDEDMFESISN TAYRSSLPVPPEIFACTVGQKPSKARYYLDDTVEVLTLLQGLAASSSSKSRSNIETQV SFESSV" gene 506806..509926 /locus_tag="TCM_012028" /note="dbxref CacaoGD:Thecc1EG012028" mRNA join(506806..507163,507974..508054,509173..509312, 509413..509926) /locus_tag="TCM_012028" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08000.1" /inference="similar to AA sequence:ricco:30147.m013977" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11891t00001" CDS join(506849..507163,507974..508054,509173..509312, 509413..509662) /locus_tag="TCM_012028" /note="dbxref ricco:30147.m013977" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0JCJ5" /translation="MPGPGPHLMYAMSSGLALTHLTKGRFTPHHTLTYTLNAFFGPDI GSFSEWLSSTLFAGSSFVSSLADAIHHPFYYVLILGLPLCVFYSWVSSILVKRSVLDS VTGVPLSRRQCLLLISAGSLSHFFLDHLFEENGHSSMYTWILSTGWWINRAPVNPDAV MVVGLLCTCLIGGFIYINRTRLTKSTRKQSYQSMKLILIIASLYCLWCASQVYWVNPR RPAVGEEADLGVLVFLATYFLLPHCLCILSMNSEDIHTEQLPL" gene complement(510773..519199) /locus_tag="TCM_012029" /note="dbxref CacaoGD:Thecc1EG012029" mRNA complement(join(510773..511093,511221..511347, 511431..511656,511762..511833,511962..512034, 512167..512271,512353..512475,512624..512700, 513168..513362,518508..519199)) /locus_tag="TCM_012029" /product="Spermidine synthase 1" /inference="alignment:exonerate-protein:2:frave:gene32164" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010253t1" /inference="similar to AA sequence:ricco:30147.m013976" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1106t2" CDS complement(join(511031..511093,511221..511347, 511431..511656,511762..511833,511962..512034, 512167..512271,512353..512475,512624..512700, 513168..513362,518508..518727)) /locus_tag="TCM_012029" /note="dbxref ricco:30147.m013976; paralog of Thecc1EG010253t1" /codon_start=1 /product="Spermidine synthase 1" /protein_id="EOY20671.1" /db_xref="TAIR:AT1G23820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHU7" /translation="MEGFNVGTDNGFGLAEESTNSHMKEPAADGFVSEHETMQSSAAA ADLEMHYEIIPGSSGQVPGRHANVLREWPDNGFGLAEESTNSHEKELAADGFASEHET IQSSAAADDLEMHYEIIPGASGQLPGWYANVLREWPGEAKLYKIEKTLFHGKSEYQEL FVFQSSNHGKIAILDGSLQLTERDEFAYQEMLTHLPLCSIPNPNKVLVIGGGDGGILR ELSRHPTVEQIDICELDAMVIEVYKKFFPGVAVGYEDPRVNVHIGNGVEFIKSIPPGT YDAIILDAFQEMGPIAVELGDKRFLGSVATALRPGGVMSCPAEGPWQKDFNLAHTVAN CRKVFKGSVNYAWTAIPAYPRHELCLQTQHGAIGFMLCSTEGPAVDFKHPINPLNPEY LGVAEGPPKFYNSEIHAAAFCLPSFTIKMIGSKI" mobile_element 517918..518040 /note="source:CACAO_M_S_E15974_F3_scaffold_2 6500 6619" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 518207..518258 /note="source:CACAO_Mariner_E180_scaffold_6 4051 4102" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 520615..525175 /locus_tag="TCM_012030" /note="dbxref CacaoGD:Thecc1EG012030" mRNA join(520615..520739,520964..521135,521251..521344, 521786..521943,522072..522364,522978..523042, 523235..523282,523387..523488,523586..523789, 523869..523885,523968..524048,524550..525175) /locus_tag="TCM_012030" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(520724..520739,520964..521135,521251..521344, 521786..521943,522072..522364,522978..523042, 523235..523282,523387..523488,523586..523789, 523869..523885,523968..524048,524550) /locus_tag="TCM_012030" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20672.1" /translation="MADQGGDFNIVKSIEERKRCSQSGTDISYFNDFIDSSELTDLPL VGKKFTRYGVEAKRNRIDRGHDHSSFLTVGYQQGTFMKRLLKIGIQQFLMGLPFKKLS REDATSLESPVSMEEVKATVWECNDSKALELDGFNPNFLNAFGILPISLVNSLHKILA RLLANQLKKVIFTVIRDTQSTFNNGHQIMDSILFANKINHNMKKMHITKEVSLSNLTL RRHLIVLIGILFYVSWRPWVSALNGEALKGVIRKLEQLRRAFLLGRGVWIPSSASPNK MSASLKIDGYMMRNPFVKNIFTYSHWPMIKKLRSLMFGTMEDKLVWVHDPAGNFSVKK FYSIMHSDLDDRKVWFHSIWNLSIPSKVQCFLWLAIYDSIPTKSFLASRGVFSIGRLS FYGREAQMFDGGIWLNPLVIMACA" mobile_element 524995..526518 /note="source:INTACT803_F10_scaffold_6-int 265 1798" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 528504..528606 /note="source:CACAO_M_E44294_F10_scaffold_6 1814 1916" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 528606..528996 /note="source:INTACT687_F13_scaffold_3-int 1297 1657" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 528640..529052 /note="source:scaffold_1_CACTA_0008 952 1350" /mobile_element_type="transposon:TIR/CACTA" mobile_element 530278..530614 /note="source:INTACT687_F13_scaffold_3-int 1638 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(530614..531956) /note="source:INTACT375_F10_scaffold_10-int 733 2069" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 532218..532926 /note="source:INTACT409_F10_scaffold_9-int 4237 4956" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(533301..537259) /locus_tag="TCM_012031" /note="dbxref CacaoGD:Thecc1EG012031" mRNA complement(join(533301..533564,533834..533963, 534349..534544,534882..534953,535026..535098, 535242..535346,535458..535580,535723..535799, 536963..537259)) /locus_tag="TCM_012031" /product="Spermidine synthase 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g19580.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010253t1" /inference="similar to AA sequence:Phytozome:Glyma06g19580.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g200t1" CDS complement(join(533502..533564,533834..533963, 534349..534544,534882..534953,535026..535098, 535242..535346,535458..535580,535723..535799, 536963..537179)) /locus_tag="TCM_012031" /note="paralog of Thecc1EG010253t1" /codon_start=1 /product="Spermidine synthase 1" /protein_id="EOY20673.1" /db_xref="Phytozome:Glyma06g19580.1" /db_xref="TAIR:AT1G23820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUB3" /translation="MADISNIVSGANVHINTPRKIVTTMSNSNGETDESACLPVSVEM QDNVKEAGDLLQFPSINGWFAENCPMWPGQAHFLKVEKVLFEGKSKYQSMMVFQSSGY GKVFVLDGALQLTEKDECSYQEMMTHLPLCSIPDPSKVLLIGGGDGGILREISRHMSV EQIDICEIDTMLIDVYKEFFPDIAIGYDDPRVTLHIQDGTAFLKSAPNATYDAIIVDA FDPIRPEHELFDSPFFELAARSLRPGGVMCIQAESLWYQPFNIEELISSFRNIFRGSI SYAWTVVPTYPSGVIGFLLCSTEGPYVDFKKPVNPIDPDQISGVARGPLQFYNSEVHS AAFCLPTFAKKATGFDG" gene 537309..545267 /locus_tag="TCM_012032" /note="dbxref CacaoGD:Thecc1EG012032" mRNA join(537309..537372,539518..539955,541131..541343, 541503..541819,542494..542605,543567..543803, 544123..545267) /locus_tag="TCM_012032" /product="Cyclic nucleotide-gated channel 16" /inference="alignment:exonerate- protein:2:ricco:30147.m013975.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016857t1" /inference="similar to AA sequence:ricco:30147.m013975" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g214t1" CDS join(539518..539955,541131..541343,541503..541819, 542494..542605,543567..543803,544123..544890) /locus_tag="TCM_012032" /note="dbxref ricco:30147.m013975; paralog of Thecc1EG016857t1" /codon_start=1 /product="Cyclic nucleotide-gated channel 16" /protein_id="EOY20674.1" /db_xref="TAIR:AT3G48010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJA4" /translation="MNNLHLYASSRFRHLPKTFSLRREVPWWDQILDPGSQIVTKWNY IILVTCLIALFLDPLYFYLPVIAGPACMSIDLGLGIIVTFFRTVADLFFLMHIILKFR TAFVAPNSRVFGKGELVMDPRAIAIRYLKSSFAIDLAAALPLPQIVIWFIIPAAKSPS AAHANHTLSFIVLIQYVPRFFIMFPLNQRIIKTTGVVAKTAWSGAAYNLLLSMLASHV LGSSWYVLSIQRQYQCWRMECAKEMNATHSPSCNPLFLDCSTIGKPERNFWLKVTRVI TSCDAKNDDNNDFQFGMFSDAFTNDVASADFLDKYFYCLWWGLKNLSSYGQNIVTSTL SGETLFCILICIIGLVFFSHLIGNMQTYLQSTSARIEEWRVRRRDTEEWMRHRQLPPD LQDRVRRFVQYKWIATRGVDEEAILKSLPLDLRRQIQRHLCLALVRRVPFFAQMDDQL LDAICERLVPSLNTNDMYLVREGDPVNEMLFIIRGRLESSTTNGGRAGFFNSITLGPG DFCGEELLTWALVPASTSELNLPLSTRTVKSLTEVEAFALRSRDLKFVAKQFKRLHSK TLQHAFRYYSHQWRTWGACFIQAAWRRFKRKKQAMELAKQENLYYMQDNEDGYGEGSA AAEYDDGGAASADNANNSQHLGATILASKFAKNTRKGTKKITRIDPDDSSLKLPKMFK PVEPDFSADHDS" mobile_element complement(542350..542389) /note="source:CACAO_Mutator_E1149_scaffold_5 4722 4761" /mobile_element_type="transposon:TIR/Mutator" gene complement(546060..549653) /locus_tag="TCM_012033" /note="dbxref CacaoGD:Thecc1EG012033" mRNA complement(join(546060..546555,547295..548763, 549345..549653)) /locus_tag="TCM_012033" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene34115" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045093t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06010.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS complement(join(546316..546555,547295..548323)) /locus_tag="TCM_012033" /note="paralog of Thecc1EG045093t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20675.1" /db_xref="Phytozome:POPTR_0001s06010.1" /translation="MMIFGQLKKIILSNILKFACVTREMMMVELIIVKNLRINGCEEL TSLWQSKWGWLAPLRSLHNLEFQNYPQVVCIGAAKEEAKEELLQLEIPCNIKHVRLEG FQGLERLSKSSHNLTCLTELEIVKCPNLVSLSVDNLPPNLRTLNIHNCENLQYLLDDI ENIDFSSTSLLESLQVSACEALKSLSSSGQLPVGLKLLNIYLYPELAVLAQKIGDNTC LESLSLWDCRNIKYLLKGLDKLSCLQQIKFQDCPNLISFPKSGLPSANLKTLWLCGCE KLEALPNLHSLQQLFILACPRVQYSIREWGFLTNLTSLLMCEPKICVRQSWSGDCIDS PLLQPSTLMDRNESEIPVIDESTKPGHKGGMDLHHHAIELDIESWPVEHSMEQQDEDR PVKCQMPAYSSINVRYRVHLLEQWFRCDNS" gene complement(549700..551683) /locus_tag="TCM_012034" /note="dbxref CacaoGD:Thecc1EG012034" mRNA complement(join(549700..550727,551499..551683)) /locus_tag="TCM_012034" /product="NB-ARC domain-containing disease resistance protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400047596.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045109t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000639001" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13018t00001" CDS complement(join(549868..550727,551499..551661)) /locus_tag="TCM_012034" /note="paralog of Thecc1EG045109t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein" /protein_id="EOY20676.1" /db_xref="Phytozome:GSVIVT01000639001" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5T4" /translation="MIAAKRIMRYLKKTEYYGIHYTKIADFALCGYIDSDFAGSSEDA KSTSGYLFTLDVFNIKEITGRLEGLATRKANLQLRGNGVGRPVAIPKRLLSTSLVNEA KVRGRDKDKKAILDLLLRKDGLDNGVSVIPIVGMGGIGKTTLAQLVYNDDSIRGYFDL KAWVCVSEEFDVIKITKIILQSVRSLSCDINDLNLLQVSLKEKLSSKKFLLVLDDVWN KNYIDWMTLRFPFDARTPGSKIFVTTCNYNVSSIMRTVTDYTLQTLLDHDSLCMLAHH ALDKGDFTEHPDLKEIGLEIVKKCGGLPLATKTIGGVLHTRTNHDAWKDKLESDIWNL PEGKSN" mobile_element 550810..555449 /note="source:INTACT177_F35_scaffold_3-int 1 4640" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(551852..553083) /locus_tag="TCM_012035" /note="dbxref CacaoGD:Thecc1EG012035" mRNA complement(551852..553083) /locus_tag="TCM_012035" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024325t1" /inference="similar to AA sequence:frave:gene24361" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage" CDS complement(551893..552570) /locus_tag="TCM_012035" /note="dbxref frave:gene24361; paralog of Thecc1EG024325t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative" /protein_id="EOY20677.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BMR0" /translation="MIQKNGTWSLVDRLADRNIIGVKWIFKKKLNPDGSLNRCKARLV AKGYSQLAGVDYGETFAPVARYDTIRLLLALAVALKWNVYHLDIKYAFFNGILEEEIY IDQPKGFELLSGENKVYKLHKALCGLKQAPRRWYSRINDHFIHRGFVKSQNEATLYTL ELGNKLLLIVSLYVDDLLVTGNCEQALQNFKSQMQTEFEMSDLGLMRYFLGLEVHHLR TGIWLSQ" gene 555748..565455 /locus_tag="TCM_012037" /note="dbxref CacaoGD:Thecc1EG012037" mRNA join(555748..556009,560439..560906,561706..561840, 561943..562085,562190..562343,562430..562659, 563036..563125,563747..563920,564011..564148, 564447..564584,564676..564737,564944..565172, 565288..565455) /locus_tag="TCM_012037" /product="Aldehyde dehydrogenase family 2 member B4" /inference="alignment:exonerate- protein:2:ricco:30147.m013974.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010250t1" /inference="similar to AA sequence:ricco:30147.m013974" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02361t00002" mobile_element 558641..559804 /note="source:INTACT639F_F363_scaffold_5-int 7448 8583" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(560822..560906,561706..561840,561943..562085, 562190..562343,562430..562659,563036..563125, 563747..563920,564011..564148,564447..564584, 564676..564737,564944..565172,565288..565413) /locus_tag="TCM_012037" /note="dbxref ricco:30147.m013974; paralog of Thecc1EG010250t1" /codon_start=1 /product="Aldehyde dehydrogenase family 2 member B4" /protein_id="EOY20678.1" /db_xref="TAIR:AT3G48000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU63" /translation="MAARRISSLLTRSLSASSSASASLLSSLGRNSSRNGSIKRLSTS TALEELIVPPVQIAYTQNLIDGKFVDAASGKTFPTYDPRTGEVIAHVAEGDAEDVNRA VAAARKAFDEGPWPKMTPYERSRILLRFADLVEKHSDELAALETWNNGKLHEQAAKAE LPLLIRLFHYYAGWADKIHGLTVPADGNHHVQTLHEPIGVAGQIIPWNFPLLMFAWKV GPALACGNTIVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGFGPTAGAALASHMD VDKIAFTGSTDTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADIDHAVELAHFALF FNQGQCCCAGSRTFVHERVYDEFLEKAKARALRRVVGDPFKKGVEQGPQIDSEQFEKV LRYIRSGIESNATLECGGDRLGKKGYFIQPTVFSNVTDDMLIAKDEIFGPVQSILKFK DLDEVIRRANATRYGLAAGVFTKNIDTANTLTRALRAGTVWVNCFDVFDAAIPFGGYK MSGIGREKGIYSLHNYLQIAHRAQFVIMQWNGSHHPCRKSLPSDLLDCLKIVPAGLAL C" gene 565613..570751 /locus_tag="TCM_012038" /note="dbxref CacaoGD:Thecc1EG012038" mRNA join(565613..565661,568029..570751) /locus_tag="TCM_012038" /product="U-box domain-containing protein 19, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010246t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s08030.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g232t1" mobile_element 566320..566592 /note="source:INTACT165_F160_scaffold_9-int 4799 5075" /mobile_element_type="retrotransposon:LTR/Copia" CDS 568264..570570 /locus_tag="TCM_012038" /note="paralog of Thecc1EG010246t1" /codon_start=1 /product="U-box domain-containing protein 19, putative" /protein_id="EOY20679.1" /db_xref="Phytozome:POPTR_0012s08030.1" /db_xref="TAIR:AT1G60190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEP9" /translation="MPTLSLPSQLSTDGSSSSATCPPRFFRCPLPIFGLTETLSVQTS SKEGRALCKKGKQNFQKKKKKQIKKTESSVLFFTVFVSIPSMIQKFSQVERRIFSFPA VHPCEAVSPATLLGSLISLSQDISNHQSKFFATQRRNARETIRQIGILLVFFEEVRDR GSIVPESALLCFSELHLTFQKIRFLLEDCSREGARLWILMKSEMVATQFRTLIKTVST ALDVLPLNLIDICGEVKELVELVAKQARKAKIDIDPDDERAMRRVRSVLNRFEKGIEP EFQILKWVLDHLEIKSWCDCNKEIQFLEEEISSQCVDGKEREVPFLSSLLGFMSYCRG VVFDTLDNRNTDQTDVRCNIDILSCLNPEDFRCPISLELMIDPVTVSTGQTYDRSSIQ KWFKAGNMICPNTGEKLANTGLVPNTNLRKLIHQFCADNGVSLAKTGKKSRDITRTIM PGSPAAAEAMKFLSKFLASKLLFGPSEQKNKSAYEIRLLAKANVFNRSYLIEAGTIPP LLKLLYSFNKSIQENAIAALLKLSKHPSGKKVIVESGGLRSILSVLKRGTSLEARQIA AATIFYLSSVKGYRKLIGETPEAIAALVDLIKEGTACGKKNALVALFGLLLYPGNHQT VLDAGSVPLLVDILTSSDKHELVTDSLAVLATLAESFDGTFAILKTSSLPLIARILRS STSQAGKEHCVSILLSLCSNGGDEAIAALAKDPSVMSSLYSVVTDGTSQASKKSRSLI KILHKFHETSSSRQGCQAFEHEQSVDVW" gene 571867..574489 /locus_tag="TCM_012039" /note="dbxref CacaoGD:Thecc1EG012039" mRNA join(571867..571934,572099..572197,574056..574489) /locus_tag="TCM_012039" /product="Deletion of SUV3 suppressor 1(I) isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s10140.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03970t00001; inference alignment:Newbler:10:TSA:cgbaP2_g03970t00001" mRNA join(571867..571930,572094..572197,574056..574447) /locus_tag="TCM_012039" /product="Deletion of SUV3 suppressor 1(I) isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s10140.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g16885t00001; alternateUTRof:Thecc1EG012039t1; inference alignment:Newbler:10:TSA:cgbaL_g13160t00001; inference alignment:Newbler:10:TSA:cgbaP2_g03970t00001" CDS join(572104..572197,574056..574186) /locus_tag="TCM_012039" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Deletion of SUV3 suppressor 1(I) isoform 1" /protein_id="EOY20680.1" /translation="MATEQPKSATEDVKMDLFEDDDEFEEFEINEDWEDKEEGKEVSQ QWEDDWDDDDVNDDFSLQLRKELENNTEKN" CDS join(572104..572197,574056..574186) /locus_tag="TCM_012039" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Deletion of SUV3 suppressor 1(I) isoform 1" /protein_id="EOY20681.1" /translation="MATEQPKSATEDVKMDLFEDDDEFEEFEINEDWEDKEEGKEVSQ QWEDDWDDDDVNDDFSLQLRKELENNTEKN" gene complement(575558..576624) /locus_tag="TCM_012040" /note="dbxref CacaoGD:Thecc1EG012040" mRNA complement(join(575558..576341,576497..576624)) /locus_tag="TCM_012040" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m013971" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016860t1" /inference="similar to AA sequence:ricco:30147.m013971" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1869t1" CDS complement(575790..576230) /locus_tag="TCM_012040" /note="dbxref ricco:30147.m013971; paralog of Thecc1EG016860t1" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY20682.1" /translation="MVMEIAFSVVLLFVGVAVLVVIHVCIVGRAFRREYEDGGLVQIS SNNGAKKMSDEDLKKLPSFDYKAAEKGSSPVDCVVCLENFRKGDKCKLLPNCRHSFHA QCIDSWLLKTSICPICRTSADPSKVGMILGEERGVSSHDEVELV" gene 578271..580029 /locus_tag="TCM_012041" /note="dbxref CacaoGD:Thecc1EG012041" mRNA join(578271..578443,578622..578658,578758..578974, 579057..579218,579326..579445,579737..580029) /locus_tag="TCM_012041" /product="Nodulin MtN3 family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400047074.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016865t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400047074" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2436t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g246t1" CDS join(578401..578443,578622..578658,578758..578974, 579057..579218,579326..579445,579737..579856) /locus_tag="TCM_012041" /note="paralog of Thecc1EG016865t1" /codon_start=1 /product="Nodulin MtN3 family protein" /protein_id="EOY20683.1" /db_xref="Phytozome:PGSC0003DMP400047074" /db_xref="TAIR:AT5G62850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0J349" /translation="MVATGLIRTIVGIIGNVISFFLFLSPTPTFVKIWKAKSVQEFKP DPYIATVLNCMMWVFYGLPFVHPDSLLVITINGIGLVIELTYVAIFFIYSPWSKRRKI VLALVIEVIFMAVVIFITLFFFHTTKIRSGIVGILAIIFNVIMYSSPLTVMKLVIRTK SVKYMPFYLSVFNFLNGIVWVVYASLKLDPYILVPNGMGSLLGLLQLILYAAYYRTTN WDDEPPTEVQLPDV" gene complement(580073..585344) /locus_tag="TCM_012042" /note="dbxref CacaoGD:Thecc1EG012042" mRNA complement(join(580073..580842,581006..581114, 581532..581706,581860..582056,583816..583937, 584727..585344)) /locus_tag="TCM_012042" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016869t4" /inference="similar to AA sequence:frave:gene32170" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b011626t1a2; inference alignment:Newbler:10:TSA:cgbaB_g02682t00001" mRNA complement(join(580073..580842,581006..581140, 581532..581706,581860..582056,583816..583937, 584727..585211)) /locus_tag="TCM_012042" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016869t4" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400046877" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02682t00001" CDS complement(join(580636..580842,581006..581140, 581532..581706,581860..582056,583816..583937, 584727..585051)) /locus_tag="TCM_012042" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016869t4" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY20684.1" /db_xref="Phytozome:PGSC0003DMP400046877" /db_xref="TAIR:AT5G50000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSA4" /translation="MKESSDGFVRADQIDLKSLDEQLERHLNRVWATDKSKNKRDDDG DGRVDDDDGKLKLTPSSTNKAATIVNNERQEWEIDPSKLIIKAVIARGTFGTVHRGIY DSQDVAVKLLDWGEEGHRTDAEIASLRAAFSQEVSVWHKLEHPNVTKFIGATMGSSGL QIQTENGQIGMPTSVCCVVVEYLPGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSY LHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLN GNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEMPRCCPSSLAN VMKRCWDANPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQQQGCLCFRRYRGP" CDS complement(join(581046..581114,581532..581706, 581860..582056,583816..583937,584727..585051)) /locus_tag="TCM_012042" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene32170; paralog of Thecc1EG016869t4" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY20685.1" /db_xref="TAIR:AT5G50000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSA4" /translation="MKESSDGFVRADQIDLKSLDEQLERHLNRVWATDKSKNKRDDDG DGRVDDDDGKLKLTPSSTNKAATIVNNERQEWEIDPSKLIIKAVIARGTFGTVHRGIY DSQDVAVKLLDWGEEGHRTDAEIASLRAAFSQEVSVWHKLEHPNVTKFIGATMGSSGL QIQTENGQIGMPTSVCCVVVEYLPGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSY LHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEEMR CVQFWHLFMGDILLRHAVS" gene complement(590157..592971) /locus_tag="TCM_012043" /note="dbxref CacaoGD:Thecc1EG012043" mRNA complement(join(590157..590210,590295..590576, 590710..590779,591128..591222,591669..591728, 592083..592154,592250..592370,592777..592824, 592927..592971)) /locus_tag="TCM_012043" /product="Syntaxin, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s12320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000353t2" /inference="similar to AA sequence:ricco:29634.m002119" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05780t00001" CDS complement(join(590469..590576,590710..590779, 591128..591222,591669..591728,592083..592154, 592250..592369)) /locus_tag="TCM_012043" /note="dbxref ricco:29634.m002119; paralog of Thecc1EG000353t2" /codon_start=1 /product="Syntaxin, putative" /protein_id="EOY20686.1" /db_xref="TAIR:AT2G18250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S6E5" /translation="MAILEESVVNWKISPPNSYGAVVLGGTFDRLHDGHRLFLRSSAE LAMDRIVVGVCDGPMLTNKQFSDLIQPIEERMRNVESYIKSIKPELVVQVEPITDPYG PSIVDEKLDAIVVSKETVPGGISVNKKRADRGLSQLKIEVVDLVSEESSQGKLSSTTL RKLEAEKAKNQQSG" gene complement(596238..598618) /locus_tag="TCM_012044" /note="dbxref CacaoGD:Thecc1EG012044" mRNA complement(join(596238..596718,596825..597163, 598207..598618)) /locus_tag="TCM_012044" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m013968" /inference="similar to AA sequence:Phytozome:POPTR_0015s08580.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g257t2" CDS complement(join(596644..596718,596825..597163, 598207..598425)) /locus_tag="TCM_012044" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /protein_id="EOY20687.1" /db_xref="Phytozome:POPTR_0015s08580.1" /translation="MKKSGGGEASKPDRKTIERNRRIHMKALCFKLASLVPQQRFKPS KVYICIYIELLILSLPSFFLSQEYLTDFWEIVSQTDQLDLGVAYIKHLRERIEKLKVI KEQMMKSVEASSNIMNNNASGGLGLPVVEIRDLGSSIEVILISGLNKNFMLYEVIGIL EQEGAEVVSASFSTVGGKIFHNLHAQVKISRVGVDTSTVFQRLQELISYY" mobile_element complement(598070..598132) /note="source:CACAO_M_E49556_F134_scaffold_7 2022 2090" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 602289..603920 /note="source:INTACT700_F304_scaffold_7-int 14953 16629" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(603300..604143) /note="source:INTACT444_F216_scaffold_4-int 18811 19396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 603921..604388 /note="source:INTACT554_F250_scaffold_7-int 1644 2089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 604829..605109 /note="source:CACAO_on_E205_scaffold_7 4553 4860" /mobile_element_type="transposon:TIR/Mutator" mobile_element 604900..605139 /note="source:CACAO_M_E34142_F67_scaffold_4 5959 6202" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 605825..606681 /note="source:CACAO_M_E14079_F73_scaffold_3 1 858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 606782..608387 /note="source:CACAO_M_E44030_F73_scaffold_5 885 2489" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(614432..617366) /locus_tag="TCM_012046" /note="dbxref CacaoGD:Thecc1EG012046" mRNA complement(join(614432..616674,616770..617366)) /locus_tag="TCM_012046" /product="Polygalacturonase 2, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m013967" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010347t1" /inference="similar to AA sequence:ricco:30147.m013967" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g273t1" CDS complement(join(614836..616674,616770..616817)) /locus_tag="TCM_012046" /note="dbxref ricco:30147.m013967; paralog of Thecc1EG010347t1" /codon_start=1 /product="Polygalacturonase 2, putative" /protein_id="EOY20688.1" /db_xref="TAIR:AT1G70370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80760" /translation="MKIFFLFLFLSLSSSNVVQVYSTGTGKKSKESPFTARASLIRYW NKQISNNLPKPPFLISKASPLNAIDLAKLTKLASQKSLSSHIESFCSLANLFCLLEDS SEPDAVGKRDQDANFAVYSSKSFTGYGTSRLGGVDSFKNYSDELNTPNESFKKYSRGS NGHREEFTSYAKDANVATDNFTNYGTSATGGSGGFNNYQERVNVPNLRFTTYDSDGNN HKLSFTSYSGETNSGSEAFVSYGKNGNAVPAEFTSYSDNANTIGSSFTGYGELGNAPN NSFKAYGDSGNNPHNNFKSYDLAANAGTNSFTSYRDSANVGDDSFQSYARNSNSGKVN FANYGKSFNVGNDTFKEYGKGSTGSTSIGFKIYGLDSSFKDYAKKGVTFAGYTNSSSR EIASSRSSGVSVNRWVEPGKFFRESMLKQGNVMVMPDIRDKMPKRSFLPRGVLSKLPF STSELPSLREIFGAPDNSTMELVLINALAECERPPSQGETKRCVGSVEDMIDFATLVL GHNVAVRTTKNVEGSKQEIMLGKIKGINGGKVTKSVSCHQSLYPYLLYYCHSVPEVRV YEAEILDVKSKDKINHGVAICHLDTSTWSPSHGAFVALGSSPGRIEVCHWIFQNDMTW TIAN" gene 619346..622110 /locus_tag="TCM_012047" /note="dbxref CacaoGD:Thecc1EG012047" mRNA join(619346..619713,620259..620504,620799..620880, 621078..621292,621535..621684,621786..622110) /locus_tag="TCM_012047" /product="Phosphoglycerate mutase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08600.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08600.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1101t5_C2" mRNA join(619392..619713,620259..620504,620799..620880, 621078..621292,621535..621699,621786..621809) /locus_tag="TCM_012047" /product="Phosphoglycerate mutase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08600.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08600.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1101t5_C2; alternateUTRof:Thecc1EG012047t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1101t5_C2" CDS join(619502..619713,620259..620504,620799..620880, 621078..621292,621535..621655) /locus_tag="TCM_012047" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Phosphoglycerate mutase family protein isoform 1" /protein_id="EOY20689.1" /db_xref="Phytozome:POPTR_0015s08600.1" /db_xref="TAIR:AT5G62840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FM11" /translation="MQTITTASVSPPLPPPTSTPQTPNLHVSCQPINRRNLLLTSLTL SLSPSVSVPVASARGLLQMPPPRLSNRYFLVRAGESEFESFGIINTNPVAKTSVDSGL SEKGKKQTVRAALELRAMGACENNCWIWPSITQRAYQAAEIIAAVNGVSRSYIVPEYS FLDARGLGAYEGKKLEAVSEVYESDSISSTIKPPPIDDGTPNESVADVFVRVTQLMSI LETQYSEDTVIIVSPDSDNLTILQAGLVGLDLRRHRDLSFAPGEVRYVDPSSIPTYKQ PASAVYKCLNPPNCN" CDS join(619502..619713,620259..620504,620799..620880, 621078..621292,621535..621655) /locus_tag="TCM_012047" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Phosphoglycerate mutase family protein isoform 1" /protein_id="EOY20690.1" /db_xref="Phytozome:POPTR_0015s08600.1" /db_xref="TAIR:AT5G62840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FM11" /translation="MQTITTASVSPPLPPPTSTPQTPNLHVSCQPINRRNLLLTSLTL SLSPSVSVPVASARGLLQMPPPRLSNRYFLVRAGESEFESFGIINTNPVAKTSVDSGL SEKGKKQTVRAALELRAMGACENNCWIWPSITQRAYQAAEIIAAVNGVSRSYIVPEYS FLDARGLGAYEGKKLEAVSEVYESDSISSTIKPPPIDDGTPNESVADVFVRVTQLMSI LETQYSEDTVIIVSPDSDNLTILQAGLVGLDLRRHRDLSFAPGEVRYVDPSSIPTYKQ PASAVYKCLNPPNCN" gene 622519..628293 /locus_tag="TCM_012048" /note="dbxref CacaoGD:Thecc1EG012048" mRNA join(622519..622544,623213..623490,623588..623626, 623927..623993,624112..624185,624541..624679, 624768..624860,625075..625140,626024..626143, 626655..626768,627573..628293) /locus_tag="TCM_012048" /product="Sugar-insensitive 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013961" /inference="similar to AA sequence:ricco:30147.m013961" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00371t00001" CDS join(623462..623490,623588..623626,623927..623993, 624112..624185,624541..624679,624768..624860, 625075..625140,626024..626143,626655..626768, 627573..627971) /locus_tag="TCM_012048" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013961" /codon_start=1 /product="Sugar-insensitive 3 isoform 1" /protein_id="EOY20691.1" /db_xref="TAIR:AT3G47990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSR5" /translation="MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHKWI VVDYTTVFVFRLLMFVDNGLAAGMGLDLGWQQRYARFCGRIVVLSILSLLLYPFLWAW TIIGTLWFTSARNCLPEEGQKYGFLIWLLFSYCGLLCIACMSMGKWMTRRQAHLLRAQ QGIPISEYGVLVDMVRVPDWAFEAAGQEMRGMGQDTASYHPGLYLTPAQREAVEALIQ ELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCR CSVFPNLDLSALSNLRSADSERSSASVVTTTQYVRTQPPSQSYLLRLQGLLRPVRTEN AGAPNDADVAIETAENGGLNVAAQDSTGTETVPGGLGGHSTPPQH" mRNA join(624153..624181,624549..624679,624768..624860, 625075..625140,626024..626143,626655..626768, 627573..628229) /locus_tag="TCM_012048" /product="Sugar-insensitive 3 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m013961" /inference="similar to AA sequence:ricco:30147.m013961" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc988t10; inference alignment:Newbler:10:TSA:cgbaP2_g00371t00001" CDS join(624178..624181,624549..624679,624768..624860, 625075..625140,626024..626143,626655..626768, 627573..627971) /locus_tag="TCM_012048" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013961" /codon_start=1 /product="Sugar-insensitive 3 isoform 2" /protein_id="EOY20692.1" /db_xref="TAIR:AT3G47990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSR5" /translation="MGWQQRYARFCGRIVVLSILSLLLYPFLWAWTIIGTLWFTSARN CLPEEGQKYGFLIWLLFSYCGLLCIACMSMGKWMTRRQAHLLRAQQGIPISEYGVLVD MVRVPDWAFEAAGQEMRGMGQDTASYHPGLYLTPAQREAVEALIQELPKFRLKAVPTD CSECPICLEEFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALS NLRSADSERSSASVVTTTQYVRTQPPSQSYLLRLQGLLRPVRTENAGAPNDADVAIET AENGGLNVAAQDSTGTETVPGGLGGHSTPPQH" gene 628680..635388 /locus_tag="TCM_012049" /note="dbxref CacaoGD:Thecc1EG012049" mRNA join(628680..629222,629533..629649,629739..629804, 630595..630701,630783..630864,631640..632335, 632751..632877,632959..633122,633260..633334, 633926..634018,634152..634904,635000..635048, 635064..635346) /locus_tag="TCM_012049" /product="EXECUTER1 protein, chloroplast, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013960" /inference="similar to AA sequence:Phytozome:POPTR_0012s08110.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc229t11; alternateUTRof:Thecc1EG012049t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc240t1" mRNA join(628680..629222,629533..629649,629739..629804, 630595..630701,630783..630864,631640..632335, 632751..632877,632959..633122,633260..633334, 633926..633992,634152..634904,635000..635048, 635064..635346) /locus_tag="TCM_012049" /product="EXECUTER1 protein, chloroplast, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m013960" /inference="similar to AA sequence:Phytozome:POPTR_0012s08110.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc229t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc240t1" mRNA join(628796..629222,629533..629649,629739..629804, 630595..630701,630783..630864,631640..632335, 632751..632877,632959..633122,633260..633334, 633926..634018,634152..634564,634775..634904, 635000..635388) /locus_tag="TCM_012049" /product="EXECUTER1 protein, chloroplast, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013960" /inference="similar to AA sequence:Phytozome:POPTR_0012s08110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc240t1" CDS join(628908..629222,629533..629649,629739..629804, 630595..630701,630783..630864,631640..632335, 632751..632877,632959..633122,633260..633334, 633926..634018,634152..634253) /locus_tag="TCM_012049" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="EXECUTER1 protein, chloroplast, putative isoform 1" /protein_id="EOY20693.1" /db_xref="Phytozome:POPTR_0012s08110.1" /db_xref="TAIR:AT1G27510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RB35" /translation="MIVTNHVCGVGQSISMPQLKPFCYIDFSAKKSSNSCFVLGWNWS FASAQNRPFFRHHTKASSLRCCCNNPSNSNSSSSSSEWDWNRWSRHFSEIEQAESYAS VLKFQLEDAIEKEDFQEAAKLKLAIAEVASKDSVAEIMSQLKSAIDEERYHDASWLSR HTGSGLVGWWVGYSKDSDDPFGRLVRITPGVGRFVARSYSPRQLVSASPGTPLFEIFV VKEDEETYLMQVVYLQRAKGSSMNSTSSPSKPTKNPSTPEVENASVIDVQGNEAKAER SDEKGINIEGATEEGIKSVINFLKNKIPGLKVKVMNVDVSEEVMDNDSVKQLMQEDDE KTGSTENSEDDTDDLEEIQPDGVALGEGNNPAEDGKDLDMKLFIGGLVHNNEDTPTKD EYVRLPADIKDLERDSFLLHVPKRSSDNDNGESKASKVKIAAIAAQGVSELMPPDVAK ALWSSDKVSSKVSRDVREIVKLAVSQARRRSRLSEYTNFNRISSDNGNLDPFEGLYVG AFGPYGTEIVQLRRKYGRWNDADDETSDVEFFEYVEAVKLTGDLNVPAGQVTFRAKIG RESRLPNRGMYPDELGVVACYKGQGRIAEFSFRNPRWVDGELLQLNGKGIGPYVKGAD LGFLYIVPEQSFLVLFNRLRLPD" CDS join(628908..629222,629533..629649,629739..629804, 630595..630701,630783..630864,631640..632335, 632751..632877,632959..633122,633260..633334, 633926..634018,634152..634253) /locus_tag="TCM_012049" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="EXECUTER1 protein, chloroplast, putative isoform 1" /protein_id="EOY20694.1" /db_xref="Phytozome:POPTR_0012s08110.1" /db_xref="TAIR:AT1G27510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RB35" /translation="MIVTNHVCGVGQSISMPQLKPFCYIDFSAKKSSNSCFVLGWNWS FASAQNRPFFRHHTKASSLRCCCNNPSNSNSSSSSSEWDWNRWSRHFSEIEQAESYAS VLKFQLEDAIEKEDFQEAAKLKLAIAEVASKDSVAEIMSQLKSAIDEERYHDASWLSR HTGSGLVGWWVGYSKDSDDPFGRLVRITPGVGRFVARSYSPRQLVSASPGTPLFEIFV VKEDEETYLMQVVYLQRAKGSSMNSTSSPSKPTKNPSTPEVENASVIDVQGNEAKAER SDEKGINIEGATEEGIKSVINFLKNKIPGLKVKVMNVDVSEEVMDNDSVKQLMQEDDE KTGSTENSEDDTDDLEEIQPDGVALGEGNNPAEDGKDLDMKLFIGGLVHNNEDTPTKD EYVRLPADIKDLERDSFLLHVPKRSSDNDNGESKASKVKIAAIAAQGVSELMPPDVAK ALWSSDKVSSKVSRDVREIVKLAVSQARRRSRLSEYTNFNRISSDNGNLDPFEGLYVG AFGPYGTEIVQLRRKYGRWNDADDETSDVEFFEYVEAVKLTGDLNVPAGQVTFRAKIG RESRLPNRGMYPDELGVVACYKGQGRIAEFSFRNPRWVDGELLQLNGKGIGPYVKGAD LGFLYIVPEQSFLVLFNRLRLPD" CDS join(628908..629222,629533..629649,629739..629804, 630595..630701,630783..630864,631640..632335, 632751..632877,632959..633122,633260..633334, 633926..633992,634152..634180) /locus_tag="TCM_012049" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="EXECUTER1 protein, chloroplast, putative isoform 3" /protein_id="EOY20695.1" /db_xref="Phytozome:POPTR_0012s08110.1" /db_xref="TAIR:AT1G27510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RB35" /translation="MIVTNHVCGVGQSISMPQLKPFCYIDFSAKKSSNSCFVLGWNWS FASAQNRPFFRHHTKASSLRCCCNNPSNSNSSSSSSEWDWNRWSRHFSEIEQAESYAS VLKFQLEDAIEKEDFQEAAKLKLAIAEVASKDSVAEIMSQLKSAIDEERYHDASWLSR HTGSGLVGWWVGYSKDSDDPFGRLVRITPGVGRFVARSYSPRQLVSASPGTPLFEIFV VKEDEETYLMQVVYLQRAKGSSMNSTSSPSKPTKNPSTPEVENASVIDVQGNEAKAER SDEKGINIEGATEEGIKSVINFLKNKIPGLKVKVMNVDVSEEVMDNDSVKQLMQEDDE KTGSTENSEDDTDDLEEIQPDGVALGEGNNPAEDGKDLDMKLFIGGLVHNNEDTPTKD EYVRLPADIKDLERDSFLLHVPKRSSDNDNGESKASKVKIAAIAAQGVSELMPPDVAK ALWSSDKVSSKVSRDVREIVKLAVSQARRRSRLSEYTNFNRISSDNGNLDPFEGLYVG AFGPYGTEIVQLRRKYGRWNDADDETSDVEFFEYVEAVKLTGDLNVPAGQVTFRAKIG RESRLPNRGMYPDELGVVACYKGQGRIAEFSFRNPRWVDGHWTLCQRC" gene 634631..638878 /locus_tag="TCM_012050" /note="dbxref CacaoGD:Thecc1EG012050" mRNA join(634631..634904,635000..635385,636457..636509, 636630..637243,637371..637506,638272..638684) /locus_tag="TCM_012050" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013959" /inference="similar to AA sequence:ricco:30147.m013959" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11016t00001" CDS join(635379..635385,636457..636509,636630..637243, 637371..637506,638272..638466) /locus_tag="TCM_012050" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013959" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20696.1" /db_xref="TAIR:AT5G62820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEQ8" /translation="MLCKCRVVPVSTTAKARSGPSLNSEKAMGTEAPMKRNQNLNDIM KRSSSSNSESLNHLDSPHSPLRFHSPLRSDQGDPDPPEPDNPSPPYASPAASPGKPPV DNAKALVVVVDKSTQLNANYSPFPSPPPRPTTPPQQSSHFTVNRAIKEEAPGVSTRTK AGGGGGARAVAQVLRRSKVRQTVEMAAFAFRLSEVVLCLISFSVMAADKTQGWSGDSF DRYKEYRYCLSVTVIGFVYAGFQAFDLAYYLITEAHVFHHYLRQPLSFSMDQMLAYLL ISASSAAATRVDDWQSNWGKDEFTEMASASVAMAFLAFIAFAFSSLISGYELCTHESP " mRNA join(636560..637243,637451..637506,638272..638830) /locus_tag="TCM_012050" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m013959" /inference="similar to AA sequence:ricco:30147.m013959" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g333t2; inference alignment:Newbler:10:TSA:cgbaB_g11016t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc184t1" CDS join(636651..637243,637451..637506,638272..638324) /locus_tag="TCM_012050" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m013959" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY20698.1" /db_xref="TAIR:AT5G62820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEQ8" /translation="MGTEAPMKRNQNLNDIMKRSSSSNSESLNHLDSPHSPLRFHSPL RSDQGDPDPPEPDNPSPPYASPAASPGKPPVDNAKALVVVVDKSTQLNANYSPFPSPP PRPTTPPQQSSHFTVNRAIKEEAPGVSTRTKAGGGGGARAVAQVLRRSKVRQTVEMAA FAFRLSEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRSTCIPPLPPSASQFLHGSDA SLSFDFCIVCCSHPG" mRNA join(<636731..637243,637371..637506,638312..638878) /locus_tag="TCM_012050" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m013959" /inference="similar to AA sequence:ricco:30147.m013959" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1001t10; inference alignment:Newbler:10:TSA:cgbaB_g11016t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc184t1" CDS join(<636732..637243,637371..637506,638312..638398) /locus_tag="TCM_012050" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013959" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY20697.1" /db_xref="TAIR:AT2G36330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEQ8" /translation="LNHLDSPHSPLRFHSPLRSDQGDPDPPEPDNPSPPYASPAASPG KPPVDNAKALVVVVDKSTQLNANYSPFPSPPPRPTTPPQQSSHFTVNRAIKEEAPGVS TRTKAGGGGGARAVAQVLRRSKVRQTVEMAAFAFRLSEVVLCLISFSVMAADKTQGWS GDSFDRYKEYRYCLSVTVIGFVYAGFQAFDLAYYLITEAHVFHHYLRQPLSFSMDQPP GLMIGNLIGARTSSLRWLVPQLQWPS" mobile_element complement(639515..639631) /note="source:scaffold_9_CACTA_0936 327 424" /mobile_element_type="transposon:TIR/CACTA" mobile_element 639520..639606 /note="source:scaffold_10_CACTA_0137 6927 7013" /mobile_element_type="transposon:TIR/CACTA" gene complement(643759..644881) /locus_tag="TCM_012051" /note="dbxref CacaoGD:Thecc1EG012051" mRNA complement(join(643759..644189,644299..644365, 644756..644881)) /locus_tag="TCM_012051" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g277t1" CDS complement(join(643964..644189,644299..644365, 644756..644759)) /locus_tag="TCM_012051" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20699.1" /translation="MSNGKWGPLAQVVIRGCVGHWPYWNHLFEGPPAVGKRVGHAPPG LWGEASWVGVGIPAAQPPPQPARLGQSSYCCCSFAGSNLLSVHVHFLFLSLFRL" mobile_element complement(645032..645122) /note="source:INTACT433_F212_scaffold_1-int 3044 3136" /mobile_element_type="retrotransposon:LTR/Copia" gene 645255..652137 /locus_tag="TCM_012052" /note="dbxref CacaoGD:Thecc1EG012052" mRNA join(645255..645500,646442..646810,648571..649026, 651663..652137) /locus_tag="TCM_012052" /product="Serine/threonine-protein kinase HT1" /inference="alignment:exonerate- protein:2:ricco:30147.m013958" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030336t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s08140.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc66t2" CDS join(646451..646810,648571..649026,651663..651893) /locus_tag="TCM_012052" /note="paralog of Thecc1EG030336t1" /codon_start=1 /product="Serine/threonine-protein kinase HT1" /protein_id="EOY20700.1" /db_xref="Phytozome:POPTR_0012s08140.1" /db_xref="TAIR:AT1G62400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2MHE4" /translation="MKNLYWFKQISNNVRSERRLSLGEYKRAISWSKYLVSSGAEIKG EGEEEWSADMSQLFIGNKFASGRHSRIYRGIYKQRDVAIKLISQPEEDANLANFLEKQ FISEVALLFHLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKYLHQQEPYSVPLNLV LKLALDIARGMQYLHSEGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFT GTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARP PLPSTCPLAFGHLINRCWSSNPQKRPHFDEIVSILEHYAESLEEDPEFFSTYKPSPDH GILRCLPKCIAGHY" gene 654698..658811 /locus_tag="TCM_012053" /note="dbxref CacaoGD:Thecc1EG012053" mRNA join(654698..655246,655637..657716,658079..658811) /locus_tag="TCM_012053" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013957.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016881t1" /inference="similar to AA sequence:ricco:30147.m013957" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc533t2" mRNA join(654881..655246,655695..657716,658079..658675) /locus_tag="TCM_012053" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013957.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016881t1" /inference="similar to AA sequence:ricco:30147.m013957" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc519t2; alternateUTRof:Thecc1EG012053t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc533t2" CDS join(655726..657716,658079..658289) /locus_tag="TCM_012053" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013957; paralog of Thecc1EG016881t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY20701.1" /db_xref="TAIR:AT1G27500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZI6" /translation="MPGLIMDEIKEEAVMNEVNGTSAHIKENSVSNKSPKSTPSPRSP HGADHPINGMVQVDTSIEQLYENVCDMQSSDQSPSRQSCGSYGEESRIDSELRHLVGG EMREVEIMQAEDMDKPEDDTRSNSSSKRGSSSNAKKSGQLDKTQSASVKSTSSGHVQK ASQSQLDSEASTKPSPKGKSPPEKPPIDKRNRSLKKPSTGSMKKGKGSKLQNGSEDAS ESGLGNPDLGPYLLKQARDLVSSGDNPQKALELALRAAKAYELCANGKPSLELVMCLH VTAAIYCSLGQYSEAIPLLEQSIEIPLIEEGQEHALAKFAGHMQLGDTHAMLGQLENS ITCYSTGFEVQKQVLGEADPRVGETCRYLAEAYVQALQFDEAQRLCQMAIDIHRENGS PASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQEAEVASVDCSIGDTYL SLARYDEAVFAYQKALTAFKTTKGENHPAIGSVFVRLADLYNRTGKLRESKSYCENAL RIYEKPMPGIPPEEIASGLTDVSAIYESMNDLDQAIKLLQRALKIYDDAPGQQTTTAG IEAQMGVMYYMLGNYSESYNSFKSAISKLRGCGERKSAFFGIALNQMGLACVQRYSIN EAVELFEEAKSILEQACGPYHPDTLGVCSNLAGTYDAIGRLDDAIEILEYVVEMREEK LGTANPEVYDEKKRLAELLKEAGKVRSRKARSLETLLDDNPPNVNGEGIKV" CDS join(655726..657716,658079..658289) /locus_tag="TCM_012053" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013957; paralog of Thecc1EG016881t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY20702.1" /db_xref="TAIR:AT1G27500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZI6" /translation="MPGLIMDEIKEEAVMNEVNGTSAHIKENSVSNKSPKSTPSPRSP HGADHPINGMVQVDTSIEQLYENVCDMQSSDQSPSRQSCGSYGEESRIDSELRHLVGG EMREVEIMQAEDMDKPEDDTRSNSSSKRGSSSNAKKSGQLDKTQSASVKSTSSGHVQK ASQSQLDSEASTKPSPKGKSPPEKPPIDKRNRSLKKPSTGSMKKGKGSKLQNGSEDAS ESGLGNPDLGPYLLKQARDLVSSGDNPQKALELALRAAKAYELCANGKPSLELVMCLH VTAAIYCSLGQYSEAIPLLEQSIEIPLIEEGQEHALAKFAGHMQLGDTHAMLGQLENS ITCYSTGFEVQKQVLGEADPRVGETCRYLAEAYVQALQFDEAQRLCQMAIDIHRENGS PASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQEAEVASVDCSIGDTYL SLARYDEAVFAYQKALTAFKTTKGENHPAIGSVFVRLADLYNRTGKLRESKSYCENAL RIYEKPMPGIPPEEIASGLTDVSAIYESMNDLDQAIKLLQRALKIYDDAPGQQTTTAG IEAQMGVMYYMLGNYSESYNSFKSAISKLRGCGERKSAFFGIALNQMGLACVQRYSIN EAVELFEEAKSILEQACGPYHPDTLGVCSNLAGTYDAIGRLDDAIEILEYVVEMREEK LGTANPEVYDEKKRLAELLKEAGKVRSRKARSLETLLDDNPPNVNGEGIKV" gene complement(658989..662046) /locus_tag="TCM_012054" /note="dbxref CacaoGD:Thecc1EG012054" mRNA complement(658989..662046) /locus_tag="TCM_012054" /product="Tetratricopeptide repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08170.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s08170.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc295t1" CDS complement(659568..662015) /locus_tag="TCM_012054" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY20703.1" /db_xref="Phytozome:POPTR_0012s08170.1" /db_xref="TAIR:AT4G21300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I396" /translation="MEAMNLFNRHSFNIQRQSKDQENLRLFSGLPHYPKNVSFIKRPF SVSSNSQTFFTSLNFPENPSQKPQNQHGFSRNKLIMEFTEHGLFEDAIRVYLGMLQNG FQVQDFKFFPCLIKAFGGVSDVKRSRQIHGHVLKLGFLADVYVVNALLGMYWKCGEIK DAVKMFDKMSERDFVSWNSMISGFCQSEDYLDSLMIFSLMVKEHGMFPNRVGCLSALS SCASIESRIHGREIHGFVVKNGLESDEFLVSGLIEMYMKCGDVRNAEHVFKSIINKES VRRNTVIWNVMVTGYVSNECLSKAMELFVEMLELGIQPDSSTIVAVLVLCSKLSDLGI GKQIHRLIFAFGLENDKRIETALIEMYFKCCHSEAGMKIFGRSRNDNSVMWGAVISNS AQKDCPIVALELFHNFMLKYGFPDSLMLLAVLRACSSLALKSKGMEIHCLAVKTGSVS DLYVASALVDMYGKCRDIESAQNVFSRLHLRDLVSWNALISGFSQNEWADEALAAFRD MQCEGIRPNSVTIACILSICAHLSVRILCKEVHCFLIRQGWMSNVLVINSLIAAYAKC GDINSSWIIFEKMHERNEVSWNTIISALGMHGHTDKMFVSFENMKRAGMKPDHVTFTA LLSACSHAGMVAMGCKFFESMVEGYKLQPQVEHYTCMVDLLGRAGHLNQAYDLIMSMP CDPDDRVWGSLLGSCRSHGNEKLAKVVANHIFKLDATSIGYRVLLANLYEDLGKPNEV VKVRSEIKDMGLRKQPGCSWIDIDNNIHIFVAGDCSHHQLEEIYAVVENLTLEIEGAG YVPNLPLRSVVPDEADF" mobile_element 661458..661526 /note="source:CACAO_Again_on_E213_scaffold_9 478 546" /mobile_element_type="transposon:TIR/hAT" gene 662141..667590 /locus_tag="TCM_012055" /note="dbxref CacaoGD:Thecc1EG012055" mRNA join(662141..662334,662467..662541,662635..662721, 662878..662934,665343..665435,666092..666164, 666268..666343,666496..666586,666813..666936, 667070..667445) /locus_tag="TCM_012055" /product="PNAS-3 related isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08180.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s08180.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02313t00002" mRNA join(662171..662334,662438..662541,662635..662721, 662878..662934,665343..665435,666092..666164, 666268..666343,666496..666586,666813..666936, 667070..667443) /locus_tag="TCM_012055" /product="PNAS-3 related isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08180.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007738001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02313t00001; inference alignment:Newbler:10:TSA:cgbaB_g02313t00002" mRNA join(662174..662334,662467..662541,662878..662934, 665343..665435,666092..666164,666268..666343, 666496..666586,666813..666936,667070..667590) /locus_tag="TCM_012055" /product="PNAS-3 related isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08180.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s08180.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g345t3; inference alignment:Newbler:10:TSA:cgbaB_g02313t00002" mRNA join(662180..662334,662467..662541,662635..662721, 662878..662934,665343..665435,666092..666164, 666268..666343,666496..666555,666812..666936, 667070..667269) /locus_tag="TCM_012055" /product="PNAS-3 related isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08180.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s08180.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02109t00001; inference alignment:Newbler:10:TSA:cgbaB_g02313t00002" mRNA join(662201..662334,662467..662541,662878..662934, 665343..665435,666092..666164,666268..666343, 666496..666555,666812..666936,667070..667269) /locus_tag="TCM_012055" /product="PNAS-3 related isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08180.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s08180.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02109t00002; inference alignment:Newbler:10:TSA:cgbaB_g02313t00002" CDS join(662284..662334,662467..662541,662635..662721, 662878..662934,665343..665435,666092..666164, 666268..666343,666496..666586,666813..666932) /locus_tag="TCM_012055" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="PNAS-3 related isoform 1" /protein_id="EOY20704.1" /db_xref="Phytozome:POPTR_0012s08180.1" /db_xref="TAIR:AT4G32175.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9TBM1" /translation="MEKKQSGSPPSLIDSTVVPGDVVLDLSSMTNQTIMLGGGLRQDC DAISVMKAGTLRFSKPNKYWVESSQKRYTPCVEDTVLGIVVDSKADNFLIDIKGPVLA FLPVLAFEGGTRRNIPKFEVGTLLYLRVVKANFGMNPELSCTDASGKAAEFGPLKDGY MFETSTGLSRKLLSSPTCPVLEALGKKLSFEIAVGLNGRVWVNAATPDTIVVVANAIM NSESLSGAQQIIMVEHLLKNIQ" CDS join(662284..662334,662467..662541,662635..662721, 662878..662934,665343..665435,666092..666164, 666268..666343,666496..666555,666812..666932) /locus_tag="TCM_012055" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="PNAS-3 related isoform 3" /protein_id="EOY20706.1" /db_xref="Phytozome:POPTR_0012s08180.1" /db_xref="TAIR:AT4G32175.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9TBM1" /translation="MEKKQSGSPPSLIDSTVVPGDVVLDLSSMTNQTIMLGGGLRQDC DAISVMKAGTLRFSKPNKYWVESSQKRYTPCVEDTVLGIVVDSKADNFLIDIKGPVLA FLPVLAFEGGTRRNIPKFEVGTLLYLRVVKANFGMNPELSCTDASGKAAEFGPLKDGY MFETSTGLSRKLLSSPTCPVLEALGKKLSFEVNAATPDTIVVVANAIMNSESLSGAQQ IIMVEHLLKNIQ" CDS join(662284..662334,662467..662541,662878..662934, 665343..665435,666092..666164,666268..666343, 666496..666586,666813..666932) /locus_tag="TCM_012055" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="PNAS-3 related isoform 4" /protein_id="EOY20707.1" /db_xref="Phytozome:POPTR_0012s08180.1" /db_xref="TAIR:AT4G32175.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9TBM1" /translation="MEKKQSGSPPSLIDSTVVPGDVVLDLSSMTNQTIMLGGGLRQYT PCVEDTVLGIVVDSKADNFLIDIKGPVLAFLPVLAFEGGTRRNIPKFEVGTLLYLRVV KANFGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRKLLSSPTCPVLEALGKKLS FEIAVGLNGRVWVNAATPDTIVVVANAIMNSESLSGAQQIIMVEHLLKNIQ" CDS join(662284..662334,662467..662541,662878..662934, 665343..665435,666092..666164,666268..666343, 666496..666555,666812..666932) /locus_tag="TCM_012055" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="PNAS-3 related isoform 5" /protein_id="EOY20708.1" /db_xref="Phytozome:POPTR_0012s08180.1" /db_xref="TAIR:AT4G32175.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9TBM1" /translation="MEKKQSGSPPSLIDSTVVPGDVVLDLSSMTNQTIMLGGGLRQYT PCVEDTVLGIVVDSKADNFLIDIKGPVLAFLPVLAFEGGTRRNIPKFEVGTLLYLRVV KANFGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRKLLSSPTCPVLEALGKKLS FEVNAATPDTIVVVANAIMNSESLSGAQQIIMVEHLLKNIQ" CDS join(662500..662541,662635..662721,662878..662934, 665343..665435,666092..666164,666268..666343, 666496..666586,666813..666932) /locus_tag="TCM_012055" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="PNAS-3 related isoform 2" /protein_id="EOY20705.1" /db_xref="Phytozome:GSVIVT01007738001" /db_xref="TAIR:AT4G32175.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9TBM1" /translation="MTNQTIMLGGGLRQDCDAISVMKAGTLRFSKPNKYWVESSQKRY TPCVEDTVLGIVVDSKADNFLIDIKGPVLAFLPVLAFEGGTRRNIPKFEVGTLLYLRV VKANFGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRKLLSSPTCPVLEALGKKL SFEIAVGLNGRVWVNAATPDTIVVVANAIMNSESLSGAQQIIMVEHLLKNIQ" mobile_element 662544..662590 /note="source:scaffold_1_CACTA_0031 13 60" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(662554..662613) /note="source:CACAO_M_E23938_F233_scaffold_4 696 752" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 669130..670644 /locus_tag="TCM_012057" /note="dbxref CacaoGD:Thecc1EG012057" mRNA join(669130..669340,669465..669594,670188..670644) /locus_tag="TCM_012057" /product="Myb domain protein 0" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007740001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016886t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007740001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1134t2" CDS join(669211..669340,669465..669594,670188..670599) /locus_tag="TCM_012057" /note="paralog of Thecc1EG016886t1" /codon_start=1 /product="Myb domain protein 0" /protein_id="EOY20709.1" /db_xref="Phytozome:GSVIVT01007740001" /db_xref="TAIR:AT5G14750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2KP37" /translation="MSDMEEKSSEYKKGLWTVEEDRILMDYVRVHGKGKWNRIPKITG LKRCGKSCRLRWINYLSPGVKRGDFSEEENDLIIRLHNLLGNRWSLIAGRVPGRTDNQ VKNHWNTHLSKKLGIKKEKNKVSTSSRITIKKSRQDFSTSSSPNSKLPHSCDGGGHVN PKVIMTSDGHSQNAVDCEGAQGLVAITDDYESSSWFFHDELKSHTPNVMEFLDESLDF VWLGL" gene complement(673651..676506) /locus_tag="TCM_012058" /note="dbxref CacaoGD:Thecc1EG012058" mRNA complement(join(673651..674061,674178..674283, 674392..674474,674607..674660,675019..675135, 675259..675307,675750..675896,676011..676081, 676400..676506)) /locus_tag="TCM_012058" /product="Carbonic anhydrase 2, CA2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012059t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007745001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10671t00001" CDS complement(join(673891..674061,674178..674283, 674392..674474,674607..674660,675019..675135, 675259..675307,675750..675896,676011..676066)) /locus_tag="TCM_012058" /note="paralog of Thecc1EG012059t1" /codon_start=1 /product="Carbonic anhydrase 2, CA2" /protein_id="EOY20710.1" /db_xref="Phytozome:GSVIVT01007745001" /db_xref="TAIR:AT5G14740.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RB26" /translation="MAKQSAEVVVEGLKRILISCREKEGLDREVHGKVERLIAELQGK RPSFDPDAQRIEDGFAFFKENIYDKYPECFSELAEGQHPRFLVFACSDSRVSPSVVLN FKPGEAFSGRNIANMVPPFDQLRHTEIGSVIEYAVKALEVQNILVVGHSRCGGIERLM KLPDESHTYDFIDQWVQIGLPAKIKVLEEANDLPFEEQCRLCEKESVKNSMANLLTYP FVRNAVVSGTLTLRGGYYDFVNGTFEQWKMCTEPMPPKPMPF" mobile_element complement(676988..677242) /note="source:CACAO_on_E10_scaffold_2 2825 3087" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(677258..677371) /note="source:CACAO_PIF_E465_scaffold_115 6273 6386" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(678247..678315) /note="source:CACAO_M_S_E119572_F76_scaffold_9 413 476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 678494..678579 /note="source:scaffold_9_CACTA_0946 17874 17953" /mobile_element_type="transposon:TIR/CACTA" mobile_element 680978..681247 /note="source:scaffold_8_CACTA_0858 14204 14471" /mobile_element_type="transposon:TIR/CACTA" gene complement(681369..684296) /locus_tag="TCM_012059" /note="dbxref CacaoGD:Thecc1EG012059" mRNA complement(join(681369..681780,681894..681999, 682108..682190,682324..682377,682669..682785, 682903..682951,683423..683572,683712..683782, 684198..684296)) /locus_tag="TCM_012059" /product="Carbonic anhydrase 2, CA2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g19400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012058t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007745001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02291t00001" CDS complement(join(681610..681780,681894..681999, 682108..682190,682324..682377,682669..682785, 682903..682951,683423..683572,683712..683773)) /locus_tag="TCM_012059" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012058t1" /codon_start=1 /product="Carbonic anhydrase 2, CA2 isoform 1" /protein_id="EOY20711.1" /db_xref="Phytozome:GSVIVT01007745001" /db_xref="TAIR:AT5G14740.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RB26" /translation="MEMAKHSAEVVVAGLKKILISEKDGLDQEVQGKVEKLIAELQGT RPPPPPCDPDAQRIEDGFDFFKKNIYDQHPDYFRELAEGQHPRFLVFSCSDSRVSPSV VLNFKPGEAFSGRNIANMVPQFDQLRHTEIGSVIEYAVKALEVKNILVMGHSRCGGIE RLMKLPDESVTYDFIDQWVQIGLPAKLKVLAVANDLTFEEQCRLCEKVSVKNSMANLL TYPFVRNAVVSGTLTLRGGYYDFVNGTFEQWKMCTEPMPPMPMPF" mRNA complement(join(<681905..681999,682108..682190, 682324..682380,682669..682785,682903..682951, 683423..683572,683712..683784,684198..684279)) /locus_tag="TCM_012059" /product="Carbonic anhydrase 2, CA2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g19400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012058t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007745001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g543t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g7997t1; inference alignment:Newbler:10:TSA:cgbaP2_g02291t00001" CDS complement(join(<681906..681999,682108..682190, 682324..682380,682669..682785,682903..682951, 683423..683572,683712..683773)) /locus_tag="TCM_012059" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012058t1" /codon_start=1 /product="Carbonic anhydrase 2, CA2 isoform 2" /protein_id="EOY20712.1" /db_xref="Phytozome:GSVIVT01007745001" /db_xref="TAIR:AT5G14740.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RB26" /translation="MEMAKHSAEVVVAGLKKILISEKDGLDQEVQGKVEKLIAELQGT RPPPPPCDPDAQRIEDGFDFFKKNIYDQHPDYFRELAEGQHPRFLVFSCSDSRVSPSV VLNFKPGEAFSGRNIANMVPQFDQQLRHTEIGSVIEYAVKALEVKNILVMGHSRCGGI ERLMKLPDESVTYDFIDQWVQIGLPAKLKVLAVANDLTFEEQCR" mobile_element 683565..683611 /note="source:CACAO_M_S_E14932_F233_scaffold_2 1412 1451" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 686292..686388 /note="source:CACAO_Helitron_S_E29_scaffold_3 1098 1197" /mobile_element_type="transposon:Helitron" mobile_element complement(687106..687340) /note="source:CACAO_on_E10_scaffold_2 2830 3066" /mobile_element_type="transposon:TIR/hAT" mobile_element 687406..687544 /note="source:scaffold_7_CACTA_0789 1970 2104" /mobile_element_type="transposon:TIR/CACTA" gene 690615..702336 /locus_tag="TCM_012060" /note="dbxref CacaoGD:Thecc1EG012060" mRNA join(690615..691085,691200..691273,699950..700154, 700336..700532,701314..701501,701776..701964, 702043..702336) /locus_tag="TCM_012060" /product="DNA-directed RNA polymerase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012066t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s35710.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g553t1" gene 691017..739065 /locus_tag="TCM_012069" /note="dbxref CacaoGD:Thecc1EG012069" mRNA join(691017..691085,734388..734461,734745..734983, 735080..735119,735212..735402,735619..735808, 735928..736017,736976..737046,737166..737208, 737303..737361,737612..737656,737739..737807, 738291..738928) /locus_tag="TCM_012069" /product="Peroxin 14, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400047063" /inference="similar to AA sequence:ricco:30147.m013950" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02913t00001; alternateUTRof:Thecc1EG012069t1; inference alignment:Newbler:10:TSA:cgbaP1_g02271t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc414t6" gene complement(691687..692966) /locus_tag="TCM_012062" /note="dbxref CacaoGD:Thecc1EG012062" mRNA complement(join(691687..692039,692563..692668, 692777..692966)) /locus_tag="TCM_012062" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012058t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc266t65" CDS complement(join(691932..692039,692563..692668, 692777..692805)) /locus_tag="TCM_012062" /note="paralog of Thecc1EG012058t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20718.1" /translation="MKLPDESYTYDFTDQWVQIGLPAKIKVLEEANHLPFEEQCRLCE KSGTLTMRGGYYDFVNGTFEQWKMWTEPMPPMPMPF" mobile_element 692041..692382 /note="source:CACAO_M_E49370_F1_scaffold_7 1 349" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 694140..>695512 /locus_tag="TCM_012063" /note="dbxref CacaoGD:Thecc1EG012063" mRNA 694140..>695512 /locus_tag="TCM_012063" /product="Polyprotein-like protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400060237" /inference="similar to AA sequence:Phytozome:POPTR_0005s18370.1" /note="quality class is strongpartial-expresste, express is strong, homology is paralog weak, intron is none, protein is partial3; similar to RNA sequence, EST 0.31 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4849t1" CDS 694608..>695510 /locus_tag="TCM_012063" /codon_start=1 /product="Polyprotein-like protein" /protein_id="EOY20719.1" /db_xref="Phytozome:POPTR_0005s18370.1" /translation="MILEPCKEKNSSKENVVLSKRQISINITNDLILFPNYIMAFYDP NLLSALKVQVQIIGAPQIPSTIIATLHYQMVCRVQDHAFNLSKIQTSSNNALVLTINT SQALICSFVPKRISKEDFAKLLLEKWITNYENLQEAIISIQFTKINFTKKADGTIEIK FNHSHLKEPFAPPVFSSMFMIKQTETVEPGSKQKLIKSFDHMGKPIFHFTDPITSHCP WGINCTCEGCQEDGLATNYEMDREKKKKKSKNKPKCSDRELYKKFQDGDPHVGTLGQG GRYQYLVKYSFPEWTKFVPLEKPFQ" CDS join(701325..701501,701776..701964,702043..702105) /locus_tag="TCM_012060" /note="paralog of Thecc1EG012066t1" /codon_start=1 /product="DNA-directed RNA polymerase" /protein_id="EOY20713.1" /db_xref="Phytozome:POPTR_0001s35710.1" /db_xref="TAIR:AT5G60040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GIK9" /translation="MSLIIFLMPCVQARIMPCRTLRFNESVCNPYNADFDGDEMNMHV PQTEEAQTEAFMLVGVQNNLCAPKNGEILVASIQDFLTSSFLITRKDTFYDRAAFSLI CSYMGDGMDLINLPTLALLKPIELCTGSNCLVFYYAHMQV" gene 705716..708904 /locus_tag="TCM_012065" /note="dbxref CacaoGD:Thecc1EG012065" mRNA join(705716..707214,708572..708904) /locus_tag="TCM_012065" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s18370.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0009s00900.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3769t1" CDS 705962..706804 /locus_tag="TCM_012065" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20720.1" /db_xref="Phytozome:POPTR_0009s00900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H6I3" /translation="MSSSKNSTIVNNAVIFLDATSAIKSISKIDFLREVDYIPEEGKT QPLQLSLTNPYSVYAKPTFSPVKSIKTLIKHSPKAPKEYIQSTRFDEHFIQGDQAEQF VTLQIPLEFPQQWIHHGYSHIHFGAVRLALNYHGREGQSVVAHMALLDSRYIKYEHAC IGTVEDTLNTKTLIVTLFPNYTMALCDPNLLSALKVQVQIIRAPQIPFAIIATLHYQM VYKVQDHAFNLSKIQTNLNDALVLAINISQALICSFVPKRIPREDLAKLLPEKWIINY EKLQ" gene 706193..727105 /locus_tag="TCM_012066" /note="dbxref CacaoGD:Thecc1EG012066" mRNA join(706193..706416,712280..712335,712444..712573, 712727..712876,712969..713143,713414..713601, 713786..713895,714004..714103,714577..714792, 714876..715024,715121..715262,715365..715505, 715779..715967,716046..716274,717437..717530, 717923..718157,718361..718552,720913..721011, 721772..721975,722069..722323,722913..723060, 723169..723320,723635..723790,723864..723977, 724055..724158,724939..725143,725325..725527, 726588..727105) /locus_tag="TCM_012066" /product="DNA-directed RNA polymerase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s35710.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025079001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g670t2" mobile_element complement(710280..710468) /note="source:scaffold_7_CACTA_0795 2861 3053" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(711705..711812) /note="source:scaffold_4_CACTA_0510 5767 5880" /mobile_element_type="transposon:TIR/CACTA" CDS join(712280..712335,712444..712573,712727..712876, 712969..713143,713414..713601,713786..713895, 714004..714103,714577..714792,714876..715024, 715121..715262,715365..715505,715779..715967, 716046..716274,717437..717530,717923..718157, 718361..718552,720913..721011,721772..721975, 722069..722323,722913..723060,723169..723320, 723635..723790,723864..723977,724055..724158, 724939..725143,725325..725527,726588..726639) /locus_tag="TCM_012066" /codon_start=1 /product="DNA-directed RNA polymerase" /protein_id="EOY20721.1" /db_xref="Phytozome:GSVIVT01025079001" /db_xref="TAIR:AT5G60040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GIK9" /translation="MQQKFTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQAL YYDPKSRPIEGGLLDPRMGPANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLST ILDILKCICKSCSRIILDEKLCKDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKA VKCWRCGYVNGTVKKAVAMLGIIHDRSKINDNSLEEFRSAISHTKESKASFNVATYVL NPVKVLSLFKRMTDLDCELLYLSDRPEKLIITNIAVPPIPIRPSVIMDGSQSNENDIT ERLKRIIQANASLRQELVETNAAFKCLGGWEMLQVEVAQYINSDVRGVPFSMQVSKPL SGFVQRIKGKHGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERV SNHNIEKLRQCVRNGPSKYPGARMVRYPDGSARLLIGDYRKRLADELKFGCVVDRHLE DGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE EARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDIFYDRAAFSLICSYM GDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPHASVRVYLNLIVKERNYSKKIIKRI GNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGNGNKDGLYSVLLRDYNAHAAAAC MNRLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTISGDYKKCDEEIQTFNEGKLK PKPGYDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSPLIMSQCGSKGSAINISQM IACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANSFYSGLTATEFFFHTMA GREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTVRNASGCIVQFIYGDDGMDPAC MEGKSGFPLNFDRLLMKVKATCPPIEQKCLHVGSIMQMLEEQLAKHDPAGVCSEAFKK SLKGFLKSQTNELDRVMKLVNNCAQKSEILEKVGHKISGISDRQLEVFVSTCISRYRS KVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINAAKRIST PVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKIVITSRSASVVITLDMEIILDA ELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEVVPPADRSQIHFELHSLKNLLPL VVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLVEGTGLQAVMGIEGIDGRRTWS NHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMMLLADVMTFRGEVLGITRF GIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIMGIPMQIGTGILKVIQ RVDPPPMLRYGPDPVLS" mobile_element complement(719551..719633) /note="source:scaffold_5_CACTA_0608 4852 4932" /mobile_element_type="transposon:TIR/CACTA" mobile_element 719571..720410 /note="source:scaffold_8_CACTA_0855 1771 2602" /mobile_element_type="transposon:TIR/CACTA" gene complement(727107..728071) /locus_tag="TCM_012067" /note="dbxref CacaoGD:Thecc1EG012067" mRNA complement(727107..728071) /locus_tag="TCM_012067" /product="BTB/POZ domain-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041977t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025081001" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage" CDS complement(727467..727925) /locus_tag="TCM_012067" /note="paralog of Thecc1EG041977t1" /codon_start=1 /product="BTB/POZ domain-containing protein" /protein_id="EOY20722.1" /db_xref="Phytozome:GSVIVT01025081001" /db_xref="TAIR:AT5G60050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GET8" /translation="MTFVKLWADQRELVGLHSKIPILYRHEISRITAQLCTAIGRGNI LVPKDSRFPLLSTWLEALYEDFGWMRRASRSVDKKLVEDGLSKTILTPSLRQQQVILL SWFDRFLSKGDDCPNIQTAFEVWWRRAFIGQYTDVQDSSQLQITVGSYPT" gene complement(728154..729331) /locus_tag="TCM_012068" /note="dbxref CacaoGD:Thecc1EG012068" mRNA complement(join(728154..728421,728511..729331)) /locus_tag="TCM_012068" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g34710.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041081t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc413t39" CDS complement(728526..729257) /locus_tag="TCM_012068" /note="paralog of Thecc1EG041081t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20723.1" /translation="MKTVTGKILSSTPISVSKATKIISNFAATDNGASQAVSAYLRRA SASFNELKQLHRELRKQSKSGCKHKKSKSETTVESAGESSLEPSVFNLTRGAVELSQQ ASHGCGDSEGKKHKNKKKREKGEVGNVGDGEGRSLIYDGESKRKKEKNEIGNYEEDEE KMVIEEPSEKKKHKKEKSGRKIEKFQANGVKIEKGEMRHEAEGQWENKKKRKSREIEE GIENDSFSEPRKKKKKKKIKNEVDN" mobile_element complement(730052..730304) /note="source:CACAO_on_E10_scaffold_2 2830 3066" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(730280..730367) /note="source:CACAO_on_E52_scaffold_7 3861 3945" /mobile_element_type="transposon:TIR/hAT" mobile_element 730303..730370 /note="source:scaffold_7_CACTA_0789 2033 2100" /mobile_element_type="transposon:TIR/CACTA" mobile_element 730370..730488 /note="source:scaffold_7_CACTA_0789 1970 2104" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(733535..733635) /note="source:INTACT459_F220_scaffold_4-int 1 117" /mobile_element_type="retrotransposon:LTR/Copia" mRNA join(733843..734273,734388..734461,734745..734983, 735080..735119,735212..735402,735619..735808, 735928..736017,736976..737046,737166..737208, 737303..737361,737612..737656,737739..737807, 738291..739065) /locus_tag="TCM_012069" /product="Peroxin 14, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400047063" /inference="similar to AA sequence:ricco:30147.m013950" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02271t00001" mRNA join(733998..734273,734388..734461,734745..734983, 735080..735119,735212..735402,735619..735808, 735928..736017,736976..737046,737166..737208, 737303..737361,737612..737656,737739..737807, 737968..738064,738291..738522) /locus_tag="TCM_012069" /product="Peroxin 14, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400047063" /inference="similar to AA sequence:ricco:30147.m013950" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc414t6; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc414t6; inference alignment:Newbler:10:TSA:cgbaP1_g02271t00001" mRNA join(733998..734273,734388..734461,734745..734983, 735080..735119,735212..735402,735619..735808, 735928..736017,736976..737046,737166..737208, 737303..737361,737612..737639,738290..738522) /locus_tag="TCM_012069" /product="Peroxin 14, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400047063" /inference="similar to AA sequence:Phytozome:POPTR_0012s08220.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc414t5; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc414t6; inference alignment:Newbler:10:TSA:cgbaP1_g02271t00001" CDS join(734398..734461,734745..734983,735080..735119, 735212..735402,735619..735808,735928..736017, 736976..737046,737166..737208,737303..737361, 737612..737656,737739..737807,738291..738785) /locus_tag="TCM_012069" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013950" /codon_start=1 /product="Peroxin 14, putative isoform 1" /protein_id="EOY20714.1" /db_xref="TAIR:AT5G62810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IER8" /translation="MATTQPPAPPNSTEDKPQTTPEVVQQANEVQQDGRPEAAKPIVP ASVFVNSEPIREDQVSNAVKFLSHPKVRGSPVIYRRSFLERKGLTKEEIDEAFRRVPD PPPSSQPASLNQDGQVKPSSSVQTQATMQTPPPVAAAPTGIVSAGTLAQRQFHWYHAV FAVGVLAASGAGTAVLIKNAIIPRLKSWIRKVVLEEENENAKKSDAKPSLAEEAAAAA KAAAAAAADVARASQEMLSSKNEERRRFEEFMNLIDVQVQEMKSMSNAIRKLEGQADS SGRTFVDHEDHRVSASSTKQSYANGRVDADVRSVRSASPPASAEPPHPKSYMEIMAMV QRGEKPSNIREINDMPPNPNQQPSNPRIAPRTKPWEAQNGSSQVLQSQGSGEGLIQKV QDNGLNYLVDDESSTPWWQRKNVRITEVENEDELKAGPYGVKTNEPPVQRTWVPPQPP PVAMPEAAEAIRRPKSSALKEAAKQEELAEDQSVARPLEATDELNRITKISESAGAVE INGGFSSMNSTEIQEQEQSYSEN" CDS join(734398..734461,734745..734983,735080..735119, 735212..735402,735619..735808,735928..736017, 736976..737046,737166..737208,737303..737361, 737612..737656,737739..737807,738291..738785) /locus_tag="TCM_012069" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m013950" /codon_start=1 /product="Peroxin 14, putative isoform 1" /protein_id="EOY20716.1" /db_xref="TAIR:AT5G62810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IER8" /translation="MATTQPPAPPNSTEDKPQTTPEVVQQANEVQQDGRPEAAKPIVP ASVFVNSEPIREDQVSNAVKFLSHPKVRGSPVIYRRSFLERKGLTKEEIDEAFRRVPD PPPSSQPASLNQDGQVKPSSSVQTQATMQTPPPVAAAPTGIVSAGTLAQRQFHWYHAV FAVGVLAASGAGTAVLIKNAIIPRLKSWIRKVVLEEENENAKKSDAKPSLAEEAAAAA KAAAAAAADVARASQEMLSSKNEERRRFEEFMNLIDVQVQEMKSMSNAIRKLEGQADS SGRTFVDHEDHRVSASSTKQSYANGRVDADVRSVRSASPPASAEPPHPKSYMEIMAMV QRGEKPSNIREINDMPPNPNQQPSNPRIAPRTKPWEAQNGSSQVLQSQGSGEGLIQKV QDNGLNYLVDDESSTPWWQRKNVRITEVENEDELKAGPYGVKTNEPPVQRTWVPPQPP PVAMPEAAEAIRRPKSSALKEAAKQEELAEDQSVARPLEATDELNRITKISESAGAVE INGGFSSMNSTEIQEQEQSYSEN" CDS join(734398..734461,734745..734983,735080..735119, 735212..735402,735619..735808,735928..736017, 736976..737046,737166..737208,737303..737361, 737612..737639,738290..738354) /locus_tag="TCM_012069" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Peroxin 14, putative isoform 4" /protein_id="EOY20717.1" /db_xref="Phytozome:POPTR_0012s08220.1" /db_xref="TAIR:AT5G62810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IER8" /translation="MATTQPPAPPNSTEDKPQTTPEVVQQANEVQQDGRPEAAKPIVP ASVFVNSEPIREDQVSNAVKFLSHPKVRGSPVIYRRSFLERKGLTKEEIDEAFRRVPD PPPSSQPASLNQDGQVKPSSSVQTQATMQTPPPVAAAPTGIVSAGTLAQRQFHWYHAV FAVGVLAASGAGTAVLIKNAIIPRLKSWIRKVVLEEENENAKKSDAKPSLAEEAAAAA KAAAAAAADVARASQEMLSSKNEERRRFEEFMNLIDVQVQEMKSMSNAIRKLEGQADS SGRTFVDHEDHRVSASSTKQSYANGRVDADVRSVRSASPPASAEPPHPKSYMEIMAMV QRGESLGRRKMAPARYSSLKEVAKA" CDS join(734398..734461,734745..734983,735080..735119, 735212..735402,735619..735808,735928..736017, 736976..737046,737166..737208,737303..737361, 737612..737656,737739..737807,737968..737997) /locus_tag="TCM_012069" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013950" /codon_start=1 /product="Peroxin 14, putative isoform 2" /protein_id="EOY20715.1" /db_xref="TAIR:AT5G62810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IER8" /translation="MATTQPPAPPNSTEDKPQTTPEVVQQANEVQQDGRPEAAKPIVP ASVFVNSEPIREDQVSNAVKFLSHPKVRGSPVIYRRSFLERKGLTKEEIDEAFRRVPD PPPSSQPASLNQDGQVKPSSSVQTQATMQTPPPVAAAPTGIVSAGTLAQRQFHWYHAV FAVGVLAASGAGTAVLIKNAIIPRLKSWIRKVVLEEENENAKKSDAKPSLAEEAAAAA KAAAAAAADVARASQEMLSSKNEERRRFEEFMNLIDVQVQEMKSMSNAIRKLEGQADS SGRTFVDHEDHRVSASSTKQSYANGRVDADVRSVRSASPPASAEPPHPKSYMEIMAMV QRGEKPSNIREINDMPPNPNQQPSNPRIAPRTKGATTNLFTK" gene 739113..747250 /locus_tag="TCM_012070" /note="dbxref CacaoGD:Thecc1EG012070" mRNA join(739113..739279,741591..741904,742108..742292, 742446..742532,742817..742942,743031..743093, 743554..743703,743917..743984,744323..744434, 744559..744663,744839..744960,745093..745239, 746228..747250) /locus_tag="TCM_012070" /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08230.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007752001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02325t00001" mobile_element 740722..740791 /note="source:CACAO_MITE101_scaffold_6 1 65" /mobile_element_type="transposon:TIR/MITE" mRNA join(741398..741904,742108..742292,742446..742532, 742817..742942,743031..743093,743554..743703, 743917..743984,744323..744434,744559..744663, 744839..744960,745093..745239,746228..746288, 746369..747015) /locus_tag="TCM_012070" /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08230.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s08230.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc594t13_C1; inference alignment:Newbler:10:TSA:cgbaP1_g02325t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc572t12" CDS join(741808..741904,742108..742292,742446..742532, 742817..742942,743031..743093,743554..743703, 743917..743984,744323..744434,744559..744663, 744839..744960,745093..745239,746228..746288, 746369..746509) /locus_tag="TCM_012070" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase isoform 2" /protein_id="EOY20725.1" /db_xref="Phytozome:POPTR_0012s08230.1" /db_xref="TAIR:AT5G62790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XFS9" /translation="MALNLISSPEIKSISFLDSTKSKSNFLPKLFPGGFVLKRKDCGT TFGRRVQCSAQAPQPPPAWPGRAFPEPGRKTWDGPKPISIVGSTGSIGTQTLDIVAEN PDKFRVVGLAAGSNVTLLTDQVKTFKPQIVAVRNESLVSELKEALADMEQKPEIIPGE QGVIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAH KHKVKILPADSEHSAIFQCIQGLPESALRRIILTASGGAFRDLPVEKLKEVKVADALK HPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIVIHPQSIIHSMVETQDSS VLAQLGWPDMRLPILYTMSWPERIYCSEISWPRLDLCKLGSLTFKDPDNVKYPSMSLS YAAGRAGGTMTGVLSAANEKAVELFINEKISYLDIFKLVELTCEKHRDEFRSKSCSCM IVGLLIVARITMTLFGRLGSFEFMPKAGVLAKIYGGI" CDS join(741808..741904,742108..742292,742446..742532, 742817..742942,743031..743093,743554..743703, 743917..743984,744323..744434,744559..744663, 744839..744960,745093..745239,746228..746396) /locus_tag="TCM_012070" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase isoform 1" /protein_id="EOY20724.1" /db_xref="Phytozome:GSVIVT01007752001" /db_xref="TAIR:AT5G62790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XFS9" /translation="MALNLISSPEIKSISFLDSTKSKSNFLPKLFPGGFVLKRKDCGT TFGRRVQCSAQAPQPPPAWPGRAFPEPGRKTWDGPKPISIVGSTGSIGTQTLDIVAEN PDKFRVVGLAAGSNVTLLTDQVKTFKPQIVAVRNESLVSELKEALADMEQKPEIIPGE QGVIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAH KHKVKILPADSEHSAIFQCIQGLPESALRRIILTASGGAFRDLPVEKLKEVKVADALK HPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIVIHPQSIIHSMVETQDSS VLAQLGWPDMRLPILYTMSWPERIYCSEISWPRLDLCKLGSLTFKDPDNVKYPSMSLS YAAGRAGGTMTGVLSAANEKAVELFINEKISYLDIFKLVELTCEKHRDELVATPSLEE IIHYDLWARDYAASLQRPSGLSPVPA" gene 748015..750183 /locus_tag="TCM_012071" /note="dbxref CacaoGD:Thecc1EG012071" mRNA join(748015..748584,749241..750183) /locus_tag="TCM_012071" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.47 coverage" CDS join(748353..748584,749241..749350) /locus_tag="TCM_012071" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20726.1" /translation="MLANMSLLLPIEMAFFFCFHERNQEATWQLCKDMNGKNLVCHFE QSGSKAAVLISMASYTLRNPPPTLYHMNPIKINKEVKRKDVKYAPQSKTQDALFCYFL VTFSCFLYKNV" gene complement(751453..753407) /locus_tag="TCM_012072" /note="dbxref CacaoGD:Thecc1EG012072" mRNA complement(join(751453..751734,752161..753407)) /locus_tag="TCM_012072" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08240.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s08240.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2497t1" CDS complement(752199..753095) /locus_tag="TCM_012072" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20727.1" /db_xref="Phytozome:POPTR_0012s08240.1" /db_xref="TAIR:AT5G62770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSQ5" /translation="MQMQASPLLSLSPSSPSFNTYSSGRLAEIAARVVEEFRQESGDS CQDDIYETWPPQQKQNPQLQQQVIEEEDNEEEEEDDDFEFAFVCREPETSPISADEIF HNGQIRPTYPLFNTNLLLSDDQTPDGKTVDSTHPFVSKPGPRRLPLRKLMSEERETTS CSSSEADELEGVTPGSYCVWKPKGGSSGNDQESPGRCKKSNSTGSSKRWKLRDLLYRS NSDGKDTFVFLAPSKREKTSNTNGNKAMEIPGKFQAAEEHCGGTRNLKPGDKRRSFLP YRQDLVGLFSNVHGLSKNLHPF" mobile_element complement(753683..753821) /note="source:scaffold_4_CACTA_0483 8911 9041" /mobile_element_type="transposon:TIR/CACTA" gene complement(756916..759889) /locus_tag="TCM_012073" /note="dbxref CacaoGD:Thecc1EG012073" mRNA complement(join(756916..757380,758182..758277, 758368..758504,758587..758828,758932..759889)) /locus_tag="TCM_012073" /product="RCD one 5, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007754001" /inference="similar to AA sequence:ricco:30147.m013947" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b011658t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g319t1" mRNA complement(join(757025..757430,758182..758277, 758368..758504,758587..758828,758932..759889)) /locus_tag="TCM_012073" /product="RCD one 5, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007754001" /inference="similar to AA sequence:ricco:30147.m013947" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g319t1" CDS complement(join(757296..757430,758182..758277, 758368..758504,758587..758828,758932..759476)) /locus_tag="TCM_012073" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013947" /codon_start=1 /product="RCD one 5, putative isoform 1" /protein_id="EOY20728.1" /db_xref="TAIR:AT5G62520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IES0" /translation="MAFNQNEYNDNNDNFLSFETRDSEKTHTASSNSTTLDTVNDQES VLTDCESGVSGPSFDQSPLFNNGLVRLFPGDKAHDVIMKRFLSNLGALAAHTKDLTIH KNSFLGVTWQARLQSFQIFIKAMEKKCGGDANIKYAWCSASRDEICKIVEHGFGHFGL PENSGLYGCGLYLSPDDSPMESVKNAMVDKNGMRHLMLCRVILGKAEAVQPGSKQCHP SSDEFDSGVDNLSSPKKYILWSTHMNTHILPEFILSFRAPSSLKGFLGMQDRLKIPTS PWISFPALISALSEFLPPPSINLISKYHKDLRDKKISRHELIQFVRQIAGDKLLVAVI KSSRTKKVISLQGNLFMFCFCSSLLHLAAFNEQLSMDPGAGFDILRRLAI" CDS complement(join(757312..757380,758182..758277, 758368..758504,758587..758828,758932..759476)) /locus_tag="TCM_012073" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013947" /codon_start=1 /product="RCD one 5, putative isoform 2" /protein_id="EOY20729.1" /db_xref="TAIR:AT5G62520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IES0" /translation="MAFNQNEYNDNNDNFLSFETRDSEKTHTASSNSTTLDTVNDQES VLTDCESGVSGPSFDQSPLFNNGLVRLFPGDKAHDVIMKRFLSNLGALAAHTKDLTIH KNSFLGVTWQARLQSFQIFIKAMEKKCGGDANIKYAWCSASRDEICKIVEHGFGHFGL PENSGLYGCGLYLSPDDSPMESVKNAMVDKNGMRHLMLCRVILGKAEAVQPGSKQCHP SSDEFDSGVDNLSSPKKYILWSTHMNTHILPEFILSFRAPSSLKGFLGMQDRLKIPTS PWISFPALISALSEFLPPPSINLISKYHKDLRDKKISRHELIQFVRQIAGDKLLVAVI KSSRTKPIAFSSIQRTTEHGSRSRFRHP" gene complement(760646..809130) /locus_tag="TCM_012074" /note="dbxref CacaoGD:Thecc1EG012074" mRNA complement(join(760646..761003,762305..762758, 763507..763579,763729..763832,764485..764628, 765382..765447,765517..765651,765755..765886, 766733..766832,766914..766960,767193..767271, 767368..767447,767986..768075,768548..768656, 768767..768861,769900..769959,770064..770120, 770212..770352,770619..770681,770756..770845, 770937..771017,771251..771334,771677..771760, 771876..771923,771996..772197,772296..772447, 773701..773799,773872..774036,776151..776273, 776835..776909,777002..777068,777876..777991, 778118..778435,778986..779072,779310..779414, 779521..779568,781076..781186,781837..781974, 782918..783041,783500..783617,784168..784237, 784853..784924,785490..785711,785799..785991, 786260..786306,786417..786515,786723..786863, 786948..787089,788072..788199,788302..788371, 788458..788579,789524..789709,789995..790114, 790676..790750,790989..791052,791133..791179, 791301..791457,792664..792791,793299..793424, 794393..794554,794813..794884,794992..795604, 797353..797540,797627..797716,797821..797976, 798996..799067,799593..799641,800284..800354, 800500..800541,802562..802636,803797..803881, 804089..804145,804877..804975,805983..806086, 806335..806422,806559..806698,806773..806929, 807058..807253,807367..807528,807988..808131, 808239..808347,808899..809130)) /locus_tag="TCM_012074" /product="Ataxia telangiectasia mutated, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007755001" /inference="similar to AA sequence:Phytozome:GSVIVT01007755001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc921t4" CDS complement(join(763755..763832,764485..764628, 765382..765447,765517..765651,765755..765886, 766733..766832,766914..766960,767193..767271, 767368..767447,767986..768075,768548..768656, 768767..768861,769900..769959,770064..770120, 770212..770352,770619..770681,770756..770845, 770937..771017,771251..771334,771677..771760, 771876..771923,771996..772197,772296..772447, 773701..773799,773872..774036,776151..776273, 776835..776909,777002..777068,777876..777991, 778118..778435,778986..779072,779310..779414, 779521..779568,781076..781186,781837..781974, 782918..783041,783500..783617,784168..784237, 784853..784924,785490..785711,785799..785991, 786260..786306,786417..786515,786723..786863, 786948..787089,788072..788199,788302..788371, 788458..788579,789524..789709,789995..790114, 790676..790750,790989..791052,791133..791179, 791301..791457,792664..792791,793299..793424, 794393..794554,794813..794884,794992..795604, 797353..797540,797627..797716,797821..797976, 798996..799067,799593..799641,800284..800354, 800500..800541,802562..802636,803797..803881, 804089..804145,804877..804975,805983..806086, 806335..806422,806559..806698,806773..806929, 807058..807253,807367..807528,807988..808131, 808239..808347,808899..808967)) /locus_tag="TCM_012074" /codon_start=1 /product="Ataxia telangiectasia mutated, putative" /protein_id="EOY20730.1" /db_xref="Phytozome:GSVIVT01007755001" /db_xref="TAIR:AT3G48190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RB21" /translation="MVTSRDVQEIVSKLSSDKAKAREEGIKLLNMWLEGERSIGFCKF FGQNTAKLKPNEIPQSETWPFLIKLLTQCVSLEISTSKRRPPKLTFAKTLRIVIQRAE DTKFSGNMLPLLSVVKTLFSHIWDVLNNVPSFQSEYGIILRHLLVVRDYRFHMRKHIY SCFIICYMEKVETTLTEKSNTQCSQKEEIFRSILTLQSLLENPPGDFPDNLREDIVKG FVKIFSYIRDEGKVSRKLIECINTYLLKDGPNLSSQSLEIHNAIQQFVFHCWLITHDK GLKDALVHYARLQLHLIRGVNDGSFLVEQLLDVICKELDQSNLSIPVTSWSDGAKDEK FGTLSSSQYNLVELAALVLYRACANKSRATSNEKRVKRESTAARLKEALMKGKWLWNV AFCYLIHNYYTRISKDLLVYWFEGICSSFERILNDANMGHAYDGLLWTLRSLQELSSV ALLSDAQVEISLRSSFSSKEFDCGWQLIWSHLMHALPTFSNVTPVVDAALALLGSIIS NDLTNTCVVPHDIWDLQLFKGMPSLFALYFIACYFSRNGSQGDLRDILHLRKYLLKAT LGSLNWNESSLLNDRMVLLLPAAVYALCAGCEHFTHCYEEILQLNSFVDTTEVADDWI KIDEYDHERQLENFECSVEVLANIDLDSNVQISPSQFHQSVCLPRQLREPLLHEMEAH ILGVLADHKAEKKPPSDVFIICALLSNLIYGLYLTREREEVSPFLSKLGHCLLELLNY AVNVIEKNNNDLRSLGFLGFTSGFNQKSAVVASFRSFVLCPLFTQRKDQDALDVELYD AVKKSLARLLKAFAKLYDEYTKFVSNLQSEMLSSDSSGSDSSVQISNHMDSNKGRIMD MELDVNEDAKDVDILTSGGKIPAAGAFSAVKWKLGMVSLMSSFFSVLHRKTWDVLFNL MEKELDLKVYENILWNLCRHLHSLSSSKLADLVNLINNRIRMQVSLKLDSFNVLAAIS CLLDTLLSLDIGKDKYGALALEEREAKQSLTYLAELVIKVAEFDFLDWFGRVKLIDCI CNFILLSPEIGQTMIEKLLLMLQDPDYRVRFFLSRRIGVLFQTWDGHGELFHDICSNF GVELVFYSKEKLVTAREVLAAGPQPRPRVETVIITLMQLALHSEKIELEAVFMMCAVS AIDPSQRELVTAALDNLSRNLQYISRMMYLEELIGSILFCWVACGVSIAALVEIRQLF VSDAEPSYFLPYCFNWLLPALVLHEDNSNLNWVAKIAGQPLPDMVKDHFVPIFSVCMT LHCSKSSGCEKGAVVLRNSILHLAEISENERDKLIKKNMVSIVSHILSLASCASDPII PFFSRDNVVCAIQTVVDGFLEMEDGHASVSVIDKINIFRPDRVFMFIIEMHYKISAAI HHRHRCHRLAAVEVLVNILGHRAALSSTSNYLFNLIGQFIGCHALQDQCCRIISALLK SFKSNPSKEIVGVLGEQLQFLVSKLVACYIPLEADGQPSASGSSQVLSLLLELTVDSD PLLYDYIRELEPFPEIDIFEGIRNFHQDLCRVYSPRDHLLKFVKRSCYLPPRLLSWSL QSLHKKLLAGETFQEGKTTEEFVDATYWHGDQEIVHAVWTLVRMCAADDANRIRGLVS DFISRVGIGDPHSVVFRLPGDSNHMHVCGPISHNGASEINFSMDTGISEELLIALLKV LKKYLMDDSVKIVAITSQTLRGILSTERGQKAMLSFDSYERSLIEVHSKGINLELVEK FLMDLEKKFRAEDISLEKSTTWVTHGKTFETWICPLVYLLIGYCNDVIIRLCQDVALL KTEVAELLLPSVVVNLASKKDIDVDIQKLISCQVQEHIFVASNKLIKSIQVWLNALNE LRLCYVLERSSSGPLRRESSKHAKACSYSSRSHSSTLKTRDSAARLSAIAMSTSSWDK VYWLSINYLIVARSAIICGSYFTSMMYVEYWCEEHFHSLTLGSPDFSNHEMLPQHIEI LMSAITQINEPDSLYGVIQSHTLTSQIITFEHEGNWNKALEYYDLQVRSEATAYVVGG NSTTLSLAETQSLSHSSLSTLEDETKRKPYKGLIRSLQQIGCRHVLDLYCQGLTSGKG QFQQDLEFKELQYEAAWRTGNWDFSLLYTVASSHSSGQHTKTHHFNENLHSCLRALQE GDSDEFYRKLKDSKEELVWSVSHASEESTEFIYSTIIKFQILYHLGIAWDIRWPTSSY EGIKLQKHKQKMFSVPVIPTMGQLSWLNKDWSSMLKKSQLHMNLLEPFIAFRRVLLQI LNCDNCTMEHLLQSASTLRKGSRFSQAAAALHEFKFLCGGTGEHGLTPYWLGRLEEAK LLRAQGQHEMAISLGNYVLEAYQLNEEASDVYRLVGKWLAETRSSNSRTIFEKYLKPA VSLAESHKTADKKSAERQSQTHFHLAHYADALFRSYEERLNSNEWQAAMRLRKHKTME LEALIRRLKGSTKGDQIDYSEKIKELQKQLAMDKEEAQKLQDDRDIFLSLALEGYKRC LVIGDKYDVRVVFRLVSLWFSPSSRPDVINNMLKTIGEVQTYKFVPLVYQIASRMGSI KDGIGPNNIQFALVSLVKKMAIDHPYHTIFLLLALANGDRIKDKQGRRNSFVVDRDKK LAAENLLGELSAYHGPVIIQMKQMVEIYIKLAELDTRREDSGKKASLPRDIRSVRQLE LVPVVTASFPVDHSCQYPEGSFPHFRGFADSVMVMNGINVPKMVECLGSDGRRYKQLA KSGNDDLRQDAVMEQFFGLVNTFLQNHRDTWKRRLVIRTYKVVPFTPSAGVIEWVDGT LPLGEYLTGSNRNGGAHGCYGIGDWSFLKCRAHMSNEKDKRKAFQEVCDNFRPVMHYF FLERFPQPANWFEKRLAYTRSVAASSMVGYIVGLGDRHTMNILIDQATAQVVHIDLGV AFEQGLMLKTPERVPFRLTRDIIDGMGVAGVEGIFRRCCEETLSVMRTNKEALLTIIE VFIHDPLYKWALSPLKALQRQKENDDDLDTSLEGAQDEYEGNKDAARALLRVKQKLDG YEEGEMRSAHGQVQQLIQDAIDPERLCQMFPGWGAWM" mobile_element complement(780255..780504) /note="source:CACAO_Mutator_E1376_scaffold_6 1829 2053" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(780601..780758) /note="source:CACAO_Mutator_E1376_scaffold_6 1864 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(797860..797905) /note="source:CACAO_M_E58209_F143_scaffold_9 2691 2734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(811420..811648) /note="source:CACAO_M_E23991_F4_scaffold_4 2918 3139" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(812579..814980) /locus_tag="TCM_012075" /note="dbxref CacaoGD:Thecc1EG012075" mRNA complement(join(812579..813075,813489..813566, 813787..813829,814529..814980)) /locus_tag="TCM_012075" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(join(812921..813075,813489..813566, 813787..813829,814529..814711)) /locus_tag="TCM_012075" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20731.1" /translation="MSTSTLTAKSTFTSTLIASKVFLESGCLTHATSTLAVSLNSIIN WRAQPLQCLQLQLQNRRVLVSVIVIIYEDIKNFIAMVRWALEDSLSYFSWHYLNINEG RPAMFFTLADHLVPRSSSDSTGFLKEHHIWCSQDHQDRGLLRSIRFVLPV" mobile_element complement(814150..814223) /note="source:CACAO_PIF_E465_scaffold_115 5927 5996" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 816037..822461 /note="source:INTACT20_F8_scaffold_7-int 4928 12375" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 818992..832374 /locus_tag="TCM_012077" /note="dbxref CacaoGD:Thecc1EG012077" mRNA join(818992..819155,829690..829937,830503..831867, 832314..832374) /locus_tag="TCM_012077" /product="Dof-type zinc finger DNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08280.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007758001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc542t1_C1" CDS join(819035..819155,829690..829937,830503..831372) /locus_tag="TCM_012077" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Dof-type zinc finger DNA-binding family protein isoform 1" /protein_id="EOY20732.1" /db_xref="Phytozome:GSVIVT01007758001" /db_xref="TAIR:AT5G62940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IES2" /translation="MALHSSVNATVSYSPSLFFFVKISFKNFTYEGICSNASINANSL ADTNHFNPWISLSHLFSSSSLFFCTLVPLSQVLVKRERLLSREQLFSFEYLAFCLCWV GFVSMGLTSLQVCMDSSDWLQGTIHEESGMDSSSPSGDMLACSRPLIERRLRPPHDQA LKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVAS KKSNDQSANSNNPGSSSHNPTDLHLSFPEMNLSHLNNMLGTHGANNNFMESKYNSLLE NPRPIDFMESKLEAIVGSSRNYDFMGNGELGMVGGLGDMGHGLAPNLHGLCSPYGMSL DGNGGTFLDTCQRIMLPYDANADQHAVDVKPNTKLLSLDWQDQGCSDAGKDTYGYLNN LGSWSGMMNNYGPSTTNPLV" mRNA join(<829682..829937,830503..831491,831595..831973) /locus_tag="TCM_012077" /product="F-box family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08280.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007758001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc542t1_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc542t1_C1" CDS join(<829683..829937,830503..831372) /locus_tag="TCM_012077" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="F-box family protein isoform 2" /protein_id="EOY20733.1" /db_xref="Phytozome:GSVIVT01007758001" /db_xref="TAIR:AT5G62940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IES2" /translation="FTANSLADTNHFNPWISLSHLFSSSSLFFCTLVPLSQVLVKRER LLSREQLFSFEYLAFCLCWVGFVSMGLTSLQVCMDSSDWLQGTIHEESGMDSSSPSGD MLACSRPLIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKG GTLRNIPVGGGCRKNKKVASKKSNDQSANSNNPGSSSHNPTDLHLSFPEMNLSHLNNM LGTHGANNNFMESKYNSLLENPRPIDFMESKLEAIVGSSRNYDFMGNGELGMVGGLGD MGHGLAPNLHGLCSPYGMSLDGNGGTFLDTCQRIMLPYDANADQHAVDVKPNTKLLSL DWQDQGCSDAGKDTYGYLNNLGSWSGMMNNYGPSTTNPLV" gene 832861..834733 /locus_tag="TCM_012078" /note="dbxref CacaoGD:Thecc1EG012078" mRNA join(832861..832880,833804..834733) /locus_tag="TCM_012078" /product="Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein" /inference="alignment:exonerate- protein:2:ricco:30147.m013944" /inference="similar to AA sequence:ricco:30147.m013944" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12179t00001" CDS 833910..834500 /locus_tag="TCM_012078" /note="dbxref ricco:30147.m013944" /codon_start=1 /product="Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein" /protein_id="EOY20734.1" /db_xref="TAIR:AT3G06040.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IES3" /translation="MQIMKLFGLVKVIHVRPSVREVTGPLQSRTFQHDFVPRDPNAKP KRFKYPQFYDPYGPRPLPSDKIVQLAERIASLLPEERRQIGPTLSERLRHPKLQPIET EGMDLGSQGGGAAGATKVEEKKEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAK DLVEKVPVLLKQGITKEEANDIIEKIKSAGGVAVME" mobile_element 835060..835732 /note="source:INTACT687_F13_scaffold_3-int 1298 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(835669..848526) /locus_tag="TCM_012079" /note="dbxref CacaoGD:Thecc1EG012079" mRNA complement(join(835669..836623,836873..836944, 837034..837228,837592..837675,838009..838167, 838289..838435,838708..838771,839578..839694, 840050..840132,840694..840742,840820..840864, 841217..841425,843015..843300,843409..843521, 843925..844086,844208..844301,844405..844499, 844601..844720,845393..845512,846136..846194, 846380..846592,847292..847721,848163..848526)) /locus_tag="TCM_012079" /product="Pantothenate kinase 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013941" /inference="similar to AA sequence:ricco:30147.m013941" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc578t13_C2" CDS complement(join(836534..836623,836873..836944, 837034..837228,837592..837675,838009..838167, 838289..838435,838708..838771,839578..839694, 840050..840132,840694..840742,840820..840864, 841217..841425,843015..843300,843409..843521, 843925..844086,844208..844301,844405..844499, 844601..844720,845393..845512,846136..846194, 846380..846592,847292..847637)) /locus_tag="TCM_012079" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013941" /codon_start=1 /product="Pantothenate kinase 2 isoform 1" /protein_id="EOY20735.1" /db_xref="TAIR:AT4G32180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L5Y9" /translation="MAGLSGDQVLEIDDKTEDIQNNINKDSNCDSNLTNREVTDKAGL VVRGEENSNNNNQGGERDMAPPASNSIHRSGSRPQLDLSKAAIQGSSEERDPTILLPN QSDDISHLALDIGGSLIKLVYFSRHEDRSIDDKRKKTVKERLGISNGNRRSYPILGGR LHFVKFETSKLNECLDFISSKQLHRGGIDSHHWNSEAPANENAVIKKATGGGAYKFAD LFKERLGVSIDKEDEMDCLVAGANFLLKAIRHEAFTHMEGHKEFVQLDHNDLFPYLLV NIGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRTI DMLVGDIYGGMDYSKLPPSILKSSQIGLSASTIASSFGKAISDKKELEDYRPEDISLS LLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSQGEAQAMF LRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGDLNEKASI VGFCDIWPESINPLEINGPGLGLSCSKRISWMEKFVLKGTEITAPVPMAPPGTTGLGG FEVPSSRGGTLRSDASALNVGVLHLVPTLEVFPLLANPKMYEPNTIDLSDHSELEYWF TVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPAAYGKLGLANLL ELREECLREFQFHDAYRSIKQRENEASLAVLPDLLMELDCMDEEARLLTLIEGVLAAN IFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDLFKERMLGSEGKKPQPHNR ALLFVDNSGADVVLGMLPLARELIRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKH CDILRRAAEAGGLLVDAMNNTLDGSKENASSVPLMVVENGCGSPCIDLRQVSSELAAA AKDADLIILEGMGRALHTNFNAQFKCEALKLAMVKNQRLAEKLIKGKIYDCVCRYEPA N" mRNA complement(join(<836572..836623,836873..836944, 837034..837228,837592..837675,838009..838167, 838289..838435,838708..838771,839578..839694, 840050..840132,840694..840742,840820..840864, 841217..841425,843108..843300,843409..843521, 843925..844056,844208..844301,844405..844499, 844601..844720,845393..845509,846136..846194, 846380..846592,847292..847721,848163..848403)) /locus_tag="TCM_012079" /product="Pantothenate kinase 2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m013941" /inference="similar to AA sequence:ricco:30147.m013941" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc578t13_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc578t13_C2" CDS complement(join(<836573..836623,836873..836944, 837034..837228,837592..837675,838009..838167, 838289..838435,838708..838771,839578..839694, 840050..840132,840694..840742,840820..840864, 841217..841425,843108..843300,843409..843521, 843925..844056,844208..844301,844405..844499, 844601..844720,845393..845509,846136..846194, 846380..846592,847292..847637)) /locus_tag="TCM_012079" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013941" /codon_start=1 /product="Pantothenate kinase 2 isoform 2" /protein_id="EOY20736.1" /db_xref="TAIR:AT4G32180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L5Y9" /translation="MAGLSGDQVLEIDDKTEDIQNNINKDSNCDSNLTNREVTDKAGL VVRGEENSNNNNQGGERDMAPPASNSIHRSGSRPQLDLSKAAIQGSSEERDPTILLPN QSDDISHLALDIGGSLIKLVYFSRHEDRSIDDKRKKTVKERLGISNGNRRSYPILGGR LHFVKFETSKLNECLDFISSKQLHRGGIDSHHWNSEAPANENAVIKATGGGAYKFADL FKERLGVSIDKEDEMDCLVAGANFLLKAIRHEAFTHMEGHKEFVQLDHNDLFPYLLVN IGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRTID MLVGDIYGGMDYSKIGLSASTIASSFGKAISDKKELEDYRPEDISLSLLRMISYNIGQ ISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSQGEAQAMFLRHEGFLGALG AFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGDLNEKISWMEKFVLKGTEI TAPVPMAPPGTTGLGGFEVPSSRGGTLRSDASALNVGVLHLVPTLEVFPLLANPKMYE PNTIDLSDHSELEYWFTVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARL MEEPAAYGKLGLANLLELREECLREFQFHDAYRSIKQRENEASLAVLPDLLMELDCMD EEARLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDLFK ERMLGSEGKKPQPHNRALLFVDNSGADVVLGMLPLARELIRRGTEVVLVANSLPALND VTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMNNTLDGSKENASSVPLMVVENGCG SPCIDLRQVSSELAAAAKDADLIILEGMGRALHTNFNAQFKCEALKLAMVKNQRLAEK LIKGK" gene complement(849707..851804) /locus_tag="TCM_012081" /note="dbxref CacaoGD:Thecc1EG012081" mRNA complement(join(849707..850115,851094..851148, 851461..851804)) /locus_tag="TCM_012081" /product="SufE/NifU family protein" /inference="alignment:exonerate- protein:2:frave:gene32190.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025125t2" /inference="similar to AA sequence:ricco:30147.m013940" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8006t2" CDS complement(join(849956..850115,851094..851148, 851461..851761)) /locus_tag="TCM_012081" /note="dbxref ricco:30147.m013940; paralog of Thecc1EG025125t2" /codon_start=1 /product="SufE/NifU family protein" /protein_id="EOY20737.1" /db_xref="TAIR:AT4G22220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5E637" /translation="MLRLASKRLLELASRDAAPSRTVQILPRLYHENVIDHYNNPRNV GSFDKNDPNVGTGLVGAPACGDVMKLQIKIDENTGKITDACFKTFGCGSAIASSSVAT EWVKGKSMEEVLTIKNTAIAKHLALPPVKLHCSMLAEDAIKAAVKDVEAKRAKLNGSS DAAPVEKAADA" mobile_element 854305..854401 /note="source:CACAO_PIF_E119_scaffold_3 1978 2079" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(856946..857987) /note="source:CACAO_on_E683_scaffold_9 1194 2303" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 864314..870146 /locus_tag="TCM_012083" /note="dbxref CacaoGD:Thecc1EG012083" mRNA join(864314..864849,865344..865518,865646..865728, 865812..866004,866097..866235,866467..866632, 866854..867020,867152..867325,867457..867552, 867954..868091,868171..868490,868877..869147, 869509..870146) /locus_tag="TCM_012083" /product="HCO3- transporter family" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021453t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s08340.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g778t1" gene 864315..890558 /locus_tag="TCM_012084" /note="dbxref CacaoGD:Thecc1EG012084" mRNA join(864315..864571,872683..872832,872928..873005, 873580..873720,880020..880096,889264..889428, 889783..890119) /locus_tag="TCM_012084" /product="SGNH hydrolase-type esterase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029744t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s08350.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc644t1_C2" CDS join(865415..865518,865646..865728,865812..866004, 866097..866235,866467..866632,866854..867020, 867152..867325,867457..867552,867954..868091, 868171..868490,868877..869147,869509..869820) /locus_tag="TCM_012083" /note="paralog of Thecc1EG021453t2" /codon_start=1 /product="HCO3- transporter family" /protein_id="EOY20738.1" /db_xref="Phytozome:POPTR_0012s08340.1" /db_xref="TAIR:AT3G62270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYR7" /translation="MEETFVPLRGIKNDLKGRLLCYKQDWTGGFRAGIRILAPTTYIF FASAIPVISFGEQLERNTDGSLTAVQTLASTALCGIIHSVVGGQPLLILGVAEPTVLM YTFMYNFVKDRKDLGHKLFLAWAGWVCVWTALLLFLLAILGACSIINRFTRVAGELFG LLIAMLFMQQAIRGVVEEFGIPARENPDQTALRPSWRFGNGMFALVLSFGLLLTALRS RKARSWRYGTGWVRGFIADYGVPLMVLVWTAASYIPVNHIPRGIPRRLFSPNPWSPGA YSNWTVIKEMLNVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPPSYHY DLLLLGFLVILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVSTARKSISKNS NLSQVYRSMQEAYNEMQTPLVYQLPSTLGLKELKESTIQLASSTGYIDAPVDEAIFDV DKEIDELLPVEVKEQRLSNLLQSLMVAGCIAAMPLLKKIPTSVLWGYFAFMAIESLPG NQFWERILLLFTAPSRRYKVLEEYHATFVETVPFKTIATFTFFQTVYLLVCFGITWIP IAGVLFPLLIMLLVPVRQYVLPKFFKGAHLQDLDAAEYEEAPAIAYNRTFEDQELQAR TNNIDGAEILDEIITRSRGEIRRSQSPKISSATPTSLGDIKPAYSPRISQRARSPRIS QLRGEISPSLTEKGLEFKQTPSPGPSTLGQSSNASLSS" mRNA join(872564..872593,872683..872832,872928..873005, 873580..873720,880020..880096,889264..889428, 889783..890558) /locus_tag="TCM_012084" /product="SGNH hydrolase-type esterase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029744t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s08350.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc644t2_C2; alternateUTRof:Thecc1EG012084t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc644t1_C2" CDS join(872734..872832,872928..873005,873580..873720, 880020..880096,889264..889428,889783..889951) /locus_tag="TCM_012084" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029744t2" /codon_start=1 /product="SGNH hydrolase-type esterase superfamily protein isoform 1" /protein_id="EOY20739.1" /db_xref="Phytozome:POPTR_0012s08350.1" /db_xref="TAIR:AT5G62930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FM04" /translation="MRPNIVLFGDSITEQSFRSGGWGASLADTYSRKADVLVRGYGGY NSRWALFLLHHLFPLGSAKPPVAATIFFGANDAALLGRNSERQHVPVEEYKENLRKIV NHLKECSPTMLIVLITPPPIDEEGRMAYARATYGEKAMTLPERTNEMAGVYARGCVEL AEELGLRSVNLWSKMQETDGWQKQYLRDGLHLTPEGNAVVFQELVRVFNEAWLSAAEM PYDFPHHSEIDGNNPEKAFQQKCL" CDS join(872734..872832,872928..873005,873580..873720, 880020..880096,889264..889428,889783..889951) /locus_tag="TCM_012084" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029744t2" /codon_start=1 /product="SGNH hydrolase-type esterase superfamily protein isoform 1" /protein_id="EOY20740.1" /db_xref="Phytozome:POPTR_0012s08350.1" /db_xref="TAIR:AT5G62930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FM04" /translation="MRPNIVLFGDSITEQSFRSGGWGASLADTYSRKADVLVRGYGGY NSRWALFLLHHLFPLGSAKPPVAATIFFGANDAALLGRNSERQHVPVEEYKENLRKIV NHLKECSPTMLIVLITPPPIDEEGRMAYARATYGEKAMTLPERTNEMAGVYARGCVEL AEELGLRSVNLWSKMQETDGWQKQYLRDGLHLTPEGNAVVFQELVRVFNEAWLSAAEM PYDFPHHSEIDGNNPEKAFQQKCL" misc_feature join(873694..873720,877043..877841) /locus_tag="TCM_012084" /note="Gene fragment of Thecc1EG012084t1; dbxref gnl|CacaoGD|Thecc1EG012084t1; quality class is mediumpartial-expresste-partof is thecc1eg012084t1, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc420t13_C2; dbxref CacaoGD:Thecc1EG012085t1" misc_feature join(873697..873720,880020..880096,887743..888811) /locus_tag="TCM_012084" /note="Gene fragment of Thecc1EG012084t1; dbxref gnl|CacaoGD|Thecc1EG012084t1; quality class is mediumpartial-expresste-partof is thecc1eg012084t1, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc434t14; dbxref CacaoGD:Thecc1EG012086t1" mobile_element 874205..874709 /note="source:CACAO_M_E53135_F19_scaffold_8 2336 2852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 875139..875336 /note="source:scaffold_6_CACTA_0702 3927 4122" /mobile_element_type="transposon:TIR/CACTA" mobile_element 875313..875672 /note="source:scaffold_6_CACTA_0702 4040 4433" /mobile_element_type="transposon:TIR/CACTA" mobile_element 876305..877047 /note="source:INTACT687_F13_scaffold_3-int 1290 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 877050..877317 /note="source:INTACT505_F28_scaffold_3-int 10200 10458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(878347..878799) /note="source:scaffold_6_CACTA_0702 3923 4433" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(881806..881909) /note="source:scaffold_9_CACTA_0927 8934 9042" /mobile_element_type="transposon:TIR/CACTA" mobile_element 884733..884824 /note="source:scaffold_10_CACTA_0137 6923 7014" /mobile_element_type="transposon:TIR/CACTA" mobile_element 884736..884838 /note="source:CACAO_M_E69780_F2_scaffold_9 1560 1666" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 891502..893719 /locus_tag="TCM_012087" /note="dbxref CacaoGD:Thecc1EG012087" mRNA join(891502..892280,892557..892683,892815..893719) /locus_tag="TCM_012087" /product="Myb119, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m013937" /inference="similar to AA sequence:Phytozome:GSVIVT01007731001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2107t1" CDS join(891667..892280,892557..892683,892815..893390) /locus_tag="TCM_012087" /codon_start=1 /product="Myb119, putative" /protein_id="EOY20741.1" /db_xref="Phytozome:GSVIVT01007731001" /db_xref="TAIR:AT4G18770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RB12" /translation="MELDAKLRENMTPPGQQPMFMKDELFPFETTPSSSSKGCYHWQD FHHLEHHHQVLDVNGSSPNPVFGIQTACYDPFDAFPYGCSANDVDFYECKPFADNVGA AGHGQVMDNFQGGGGYLNLSQRNSDDVVMGSDSIGYMPFDFQGVKPVNFVVPDEVSCV STAENAYYKKVGMNKNRVLASTKRTWKGRKKSNVVKGQWTIEEDRLLIQLVEQYGVRK WSLIAQMLPGRIGKQCRERWHNHLRPDIKKDTWSEEEDKVLIQAHIEIGNKWAEIAKR LPGRTENSIKNHWNATKRRQFSKRKCRSKYPRGSILQEYIKSLNLESSSSTRYQEKPS TATNAAIADMNTSTKAPNHQPKALDFCPTDRLVPEYDFNEVPDFCFDEKLLQESCSID SLLDEIPSAPPNVAGAADPVDMALVMKNEVKKELDLVEMISQQANM" gene complement(893744..897563) /locus_tag="TCM_012088" /note="dbxref CacaoGD:Thecc1EG012088" mRNA complement(join(893744..894288,894412..894541, 894832..894900,895011..895130,895308..895392, 895576..895661,896002..896154,896265..896387, 897016..897563)) /locus_tag="TCM_012088" /product="Glucose-6-phosphate/phosphate translocator-related" /inference="alignment:exonerate- protein:2:ricco:30147.m013936" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016925t1" /inference="similar to AA sequence:ricco:30147.m013936" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8052t2" CDS complement(join(894212..894288,894412..894541, 894832..894900,895011..895130,895308..895392, 895576..895661,896002..896154,896265..896387, 897016..897411)) /locus_tag="TCM_012088" /note="dbxref ricco:30147.m013936; paralog of Thecc1EG016925t1" /codon_start=1 /product="Glucose-6-phosphate/phosphate translocator-related" /protein_id="EOY20742.1" /db_xref="TAIR:AT5G33320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXN3" /translation="MQSAAFSLSSPSSFPSLKPRIFGSNLRFDPVRVSSSFSASKRHD LSASSNVVSVPSLPKRSWRLSSSSGLPLRAWNSVPSDSKAERFEVRATAAESAGEGEK AGNLMKTLELGLLFGLWYLFNIYFNIYNKQVLKVFHYPVTVTVIQFAVGTVLVALMWT FNLYKRPKITGVQLAAILPLALVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVVLS AMFLGELPTVWVVGSLVPIVGGVALASVTEASFNWAGFWSAMASNLTNQSRNVLSKKV MVKKEDAMDNITLFSIITVMSFILLAPAAIFMEGVKFTPSYLQSAGLNVKEVVVRSLI AALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVFFFKTPVSPINSLGTGIA LAGVFLYSRVKRIKPKAKAA" gene 898302..899256 /locus_tag="TCM_012089" /note="dbxref CacaoGD:Thecc1EG012089" mRNA join(898302..898763,898863..899144,899229..899256) /locus_tag="TCM_012089" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14597t00001" gene complement(898485..902973) /locus_tag="TCM_012090" /note="dbxref CacaoGD:Thecc1EG012090" mRNA complement(join(898485..898980,899223..899733, 900274..900614,902046..902155,902543..902973)) /locus_tag="TCM_012090" /product="SBP family protein" /inference="alignment:exonerate- protein:2:ricco:30147.m013935" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010408t4" /inference="similar to AA sequence:Phytozome:GSVIVT01007729001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g380t1" CDS join(898524..898763,898863..899114) /locus_tag="TCM_012089" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20743.1" /translation="MLILHIHGSHGQMAGTGSELFSPMMSPTWFIPTIGKGKPCSGKA CYIGNSFGFAGGGAGLQSSVKCTVMSDGPDHLFLRLMIVFVCQHHTNAKYEYLTGITV VSGFQLFWIQGREALGSSVTKSQQNQNPDESSRGLFMREMNGKDHCNSIHSSSAISLG TIH" CDS complement(join(898940..898980,899223..899733, 900274..900614,902046..902151)) /locus_tag="TCM_012090" /note="paralog of Thecc1EG010408t4" /codon_start=1 /product="SBP family protein" /protein_id="EOY20744.1" /db_xref="Phytozome:GSVIVT01007729001" /db_xref="TAIR:AT1G10650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3B5" /translation="MFGGHNNNPVLPVFLEENRFQYENNALPRLQLFGDCPFNNMGNE NTTSVNRPIKRGREAEPTLRQQSHHISVNNNLCLDEAGQPRSVLNPNPVSTGLRLSYE EDERNSSVTSVSGNVTTSLPVMLSLGDNLKAEIDRQKEEFDYYVRLQEDHILKGVREL KQRQTISFLNAIEKGVGRKLQEKELEIENMNRKNKELVEKIKQVSMEVQSWHYRAKYN ESIVNALKSNLKQVMEQGAVHSKEGCGESEVDDAASYTNQNHLDVLDGSGNSFSLKKQ INCRACKIMEVSVLLLPCRHLCLCKDCEGFIDVCPVCQVMKTAKLPRASLPWIQNS" mobile_element 905709..905756 /note="source:CACAO_M_E47_F305_scaffold_1 1276 1323" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 906542..912001 /locus_tag="TCM_012091" /note="dbxref CacaoGD:Thecc1EG012091" mRNA join(906542..906922,907018..907131,908022..908102, 909608..909780,909939..910035,910806..910978, 911418..911662,911796..912001) /locus_tag="TCM_012091" /product="SKP1/ASK-interacting protein 16 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb09g005200.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007727001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc896t9" mRNA join(906542..906922,907018..907131,908022..908102, 909608..909773,910938..911277) /locus_tag="TCM_012091" /product="SKP1/ASK-interacting protein 16 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb09g005200.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007727001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc896t7; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc896t9" CDS join(906590..906922,907018..907131,908022..908102, 909608..909773,910938..910972) /locus_tag="TCM_012091" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="SKP1/ASK-interacting protein 16 isoform 2" /protein_id="EOY20746.1" /db_xref="Phytozome:GSVIVT01007727001" /db_xref="UniProtKB/TrEMBL:UniRef50_Q65XS0" /translation="MHSLSLKVFTDLNARTRRNCFPGRVGHGLATDLDFGRTRRVGSG CWNGGAAGVRSCRIVACAVERNGNGGNGGGESPSLNPNPTPNESSFLSRSQTYATLKQ QMEVAAKSEDYKEAARIRDSLKMFEEEEPVLKLKRLIREAVADERFEDAARYRDELKE IAPHSLLKCSSDATTLGIRVQVRSVYIEGRSLPSRGQYFFAYRIRITNNSDRPVQLLR RHWIITDANGKTETWVKWSYHIYK" CDS join(906590..906922,907018..907131,908022..908102, 909608..909780,909939..910035,910806..910916) /locus_tag="TCM_012091" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="SKP1/ASK-interacting protein 16 isoform 1" /protein_id="EOY20745.1" /db_xref="Phytozome:GSVIVT01007727001" /db_xref="UniProtKB/TrEMBL:UniRef50_Q65XS0" /translation="MHSLSLKVFTDLNARTRRNCFPGRVGHGLATDLDFGRTRRVGSG CWNGGAAGVRSCRIVACAVERNGNGGNGGGESPSLNPNPTPNESSFLSRSQTYATLKQ QMEVAAKSEDYKEAARIRDSLKMFEEEEPVLKLKRLIREAVADERFEDAARYRDELKE IAPHSLLKCSSDATTLGIRVQVRSVYIEGRSLPSRGQYFFAYRIRITNNSDRPVQLLR RHWIITDANGKTENVWGMGVIGEQPVILPRTGFEYSSACPLSTPSGRMEGDFEMKHID RLGSPSFNVAIAPFSLSTLGDDSDTF" gene 911095..921369 /locus_tag="TCM_012094" /note="dbxref CacaoGD:Thecc1EG012094" mRNA join(911095..911222,914696..914851,915567..916056, 916516..916549,916663..916884,917007..917096, 917302..917367,917457..917548,917639..917686, 917798..917953,920907..920986) /locus_tag="TCM_012094" /product="UDP-N-acetylglucosamine--N-acetylmuramyl- pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007726001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010416t2" /inference="similar to AA sequence:Phytozome:GSVIVT01007726001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10404t00001" mRNA join(914710..914851,915708..916056,916516..916549, 916663..916884,917007..917096,917302..917367, 917457..917548,917639..917686,917798..918325) /locus_tag="TCM_012094" /product="UDP-N-acetylglucosamine--N-acetylmuramyl- pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007726001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010416t2" /inference="similar to AA sequence:Phytozome:GSVIVT01007726001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g448t2; inference alignment:Newbler:10:TSA:cgbaB_g10404t00001" mRNA join(915339..916056,916516..916549,916663..916884, 917007..917096,917302..917367,917457..917548, 917639..917686,917798..917921,921305..921369) /locus_tag="TCM_012094" /product="UDP-N-acetylglucosamine--N-acetylmuramyl- pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007726001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010416t2" /inference="similar to AA sequence:Phytozome:GSVIVT01007726001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1185t5; alternateUTRof:Thecc1EG012094t1; inference alignment:Newbler:10:TSA:cgbaB_g10404t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8011t1" CDS join(915692..916056,916516..916549,916663..916884, 917007..917096,917302..917367,917457..917548, 917639..917686,917798..917915) /locus_tag="TCM_012094" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010416t2" /codon_start=1 /product="UDP-N-acetylglucosamine--N-acetylmuramyl- pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 1" /protein_id="EOY20747.1" /db_xref="Phytozome:GSVIVT01007726001" /db_xref="TAIR:AT5G62960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NPD1" /translation="MSSLTGGGDSWQPAMTVNTTTTIYWFNWRVLLCSIWVLITATFS FILIWKYEGFRKSSHSNGGTQQDTAGSLHEDETWRPCLKGIHPAWLLAFRLVAFFVLL ILLIVTSFVDGGSIFYYYTQWTFTLITIYFGLGSVLSMRGCYQYHKRVSGDKVDNVEL DAEQGSYEDTIGGETSNNAAKNPECPEGHSVRQPAGTSGYVFQIIFQMNAGAVFLTDC VFWFIIVPFLAIKDYNLSVLAINMHSINAVLLLADTAFNCLRFPCFRIAYFFLWTVIY VIFQWLVHAWVNVWWPYPFLDLSSPYAPLWYFSVALMHFPCYGLFALMVKLKHYAFSR WFPDSYQCMR" CDS join(915692..916056,916516..916549,916663..916884, 917007..917096,917302..917367,917457..917548, 917639..917686,917798..917915) /locus_tag="TCM_012094" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010416t2" /codon_start=1 /product="UDP-N-acetylglucosamine--N-acetylmuramyl- pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 1" /protein_id="EOY20748.1" /db_xref="Phytozome:GSVIVT01007726001" /db_xref="TAIR:AT5G62960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NPD1" /translation="MSSLTGGGDSWQPAMTVNTTTTIYWFNWRVLLCSIWVLITATFS FILIWKYEGFRKSSHSNGGTQQDTAGSLHEDETWRPCLKGIHPAWLLAFRLVAFFVLL ILLIVTSFVDGGSIFYYYTQWTFTLITIYFGLGSVLSMRGCYQYHKRVSGDKVDNVEL DAEQGSYEDTIGGETSNNAAKNPECPEGHSVRQPAGTSGYVFQIIFQMNAGAVFLTDC VFWFIIVPFLAIKDYNLSVLAINMHSINAVLLLADTAFNCLRFPCFRIAYFFLWTVIY VIFQWLVHAWVNVWWPYPFLDLSSPYAPLWYFSVALMHFPCYGLFALMVKLKHYAFSR WFPDSYQCMR" CDS join(915734..916056,916516..916549,916663..916884, 917007..917096,917302..917367,917457..917548, 917639..917686,917798..917915) /locus_tag="TCM_012094" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG010416t2" /codon_start=1 /product="UDP-N-acetylglucosamine--N-acetylmuramyl- pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 3" /protein_id="EOY20749.1" /db_xref="Phytozome:GSVIVT01007726001" /db_xref="TAIR:AT5G62960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NPD1" /translation="MTVNTTTTIYWFNWRVLLCSIWVLITATFSFILIWKYEGFRKSS HSNGGTQQDTAGSLHEDETWRPCLKGIHPAWLLAFRLVAFFVLLILLIVTSFVDGGSI FYYYTQWTFTLITIYFGLGSVLSMRGCYQYHKRVSGDKVDNVELDAEQGSYEDTIGGE TSNNAAKNPECPEGHSVRQPAGTSGYVFQIIFQMNAGAVFLTDCVFWFIIVPFLAIKD YNLSVLAINMHSINAVLLLADTAFNCLRFPCFRIAYFFLWTVIYVIFQWLVHAWVNVW WPYPFLDLSSPYAPLWYFSVALMHFPCYGLFALMVKLKHYAFSRWFPDSYQCMR" mobile_element 919571..920711 /note="source:CACAO_Again_on_E67_scaffold_3 1 1141" /mobile_element_type="transposon:TIR/hAT" gene complement(920990..927129) /locus_tag="TCM_012095" /note="dbxref CacaoGD:Thecc1EG012095" mRNA complement(join(920990..921367,921483..921894, 922272..922414,922860..923085,923572..924567, 925176..927129)) /locus_tag="TCM_012095" /product="Phox domain-containing protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene32202" /inference="similar to AA sequence:Phytozome:GSVIVT01007724001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g458t1" mRNA complement(join(920990..921388,921483..921894, 922272..922414,922860..923085,923572..924567, 925176..927129)) /locus_tag="TCM_012095" /product="Phox domain-containing protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene32202" /inference="similar to AA sequence:Phytozome:GSVIVT01007724001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b011677t1a2; alternateUTRof:Thecc1EG012095t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g458t1" CDS complement(join(921586..921894,922272..922414, 922860..923085,923572..924567,925176..926534)) /locus_tag="TCM_012095" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Phox domain-containing protein, putative isoform 1" /protein_id="EOY20750.1" /db_xref="Phytozome:GSVIVT01007724001" /db_xref="TAIR:AT3G48195.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3B8" /translation="MINGEGTRKENLAEVASPDPFDPSRSKSDGGGGGGGASTASSPH YSSCGESELERYCSANSALGTPSSIATFNDCFGESEFGSVRSVSGFGLGDDFENFSLE GSQKVPSNRRIEFPKDRIEDGRVVNVKSVEEGSSSCLVSELREEDGNSSRYEHSEGED SMYNYGMDDDECRNNSYYRKKDNDEYDTKNVNENPLGINSSVAFGSNDWDDFEQEAGT TDLASFMLDATAEREKVQGGNELQKNVNSFGEFPIGLLSSVETELVEEVKDIPVASFQ EQVADDLVEEAKSSLVNVISSQRGHEAEKYVKDIPVTRNQLQDADDDMKYLETCSVTD VFEMEQDPPIEKAPVEIGLDVLDSDRVRKHQSAHAKEVIAVDESLLSERQEIGNYKAE LDPLADCAHPVYSSQKVNAELFDDCKPDSPTSTCENIVSSSTFKNIPVPADVVEEHPG PVKMEKLELNEFYDEVVHDMEEILLESVDSPGAMFSQGNRMFQPQLSLPLRDGGSTAS TSGVDDAYSHSAHLLRIDGVEVVGAKQQKGDVSLSERLVGVKEYTVYKIRVWCGDDQW EVERRYRDFCTLHRRLKSLFSDQGWSLPSPWSSVERESRKIFGNAAPDVIAERSVLIQ ECLHSIIHSRSFSSPPSALIWFLSPQDSFPSTPPSNTLSSQSTDFSRGAHTEKISPLG KTISLIVEVRPPKPMKQILEAQHYTCAGCHKHFDDGMTLMQDLVQSLGWGKPRLCEYT GQLFCSSCHTNEMAVLPARVLHNWDFTRYPVSQLAKSYLDSIHDQPMLCVSAVNPFLF SKVPTLHHVMGIRKKIRNMLPYVRCPFRMSINKGLGSRRYLLESNDFFALRDLIDLSK GAFAALPVMVETVSRKIQEHIVEQCLICCDVGIPCSARQSCNDPSSLIFPFQEGEIEK CMSCGSVFHKHCFKKLVDCPCGALLRADEATRHANSLIRGVSFGASGALDLLGKRSSS GLPVGFLSGLFSKTKPEGMEHKDNENIILMGSMPSNYL" CDS complement(join(921586..921894,922272..922414, 922860..923085,923572..924567,925176..926534)) /locus_tag="TCM_012095" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Phox domain-containing protein, putative isoform 1" /protein_id="EOY20751.1" /db_xref="Phytozome:GSVIVT01007724001" /db_xref="TAIR:AT3G48195.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3B8" /translation="MINGEGTRKENLAEVASPDPFDPSRSKSDGGGGGGGASTASSPH YSSCGESELERYCSANSALGTPSSIATFNDCFGESEFGSVRSVSGFGLGDDFENFSLE GSQKVPSNRRIEFPKDRIEDGRVVNVKSVEEGSSSCLVSELREEDGNSSRYEHSEGED SMYNYGMDDDECRNNSYYRKKDNDEYDTKNVNENPLGINSSVAFGSNDWDDFEQEAGT TDLASFMLDATAEREKVQGGNELQKNVNSFGEFPIGLLSSVETELVEEVKDIPVASFQ EQVADDLVEEAKSSLVNVISSQRGHEAEKYVKDIPVTRNQLQDADDDMKYLETCSVTD VFEMEQDPPIEKAPVEIGLDVLDSDRVRKHQSAHAKEVIAVDESLLSERQEIGNYKAE LDPLADCAHPVYSSQKVNAELFDDCKPDSPTSTCENIVSSSTFKNIPVPADVVEEHPG PVKMEKLELNEFYDEVVHDMEEILLESVDSPGAMFSQGNRMFQPQLSLPLRDGGSTAS TSGVDDAYSHSAHLLRIDGVEVVGAKQQKGDVSLSERLVGVKEYTVYKIRVWCGDDQW EVERRYRDFCTLHRRLKSLFSDQGWSLPSPWSSVERESRKIFGNAAPDVIAERSVLIQ ECLHSIIHSRSFSSPPSALIWFLSPQDSFPSTPPSNTLSSQSTDFSRGAHTEKISPLG KTISLIVEVRPPKPMKQILEAQHYTCAGCHKHFDDGMTLMQDLVQSLGWGKPRLCEYT GQLFCSSCHTNEMAVLPARVLHNWDFTRYPVSQLAKSYLDSIHDQPMLCVSAVNPFLF SKVPTLHHVMGIRKKIRNMLPYVRCPFRMSINKGLGSRRYLLESNDFFALRDLIDLSK GAFAALPVMVETVSRKIQEHIVEQCLICCDVGIPCSARQSCNDPSSLIFPFQEGEIEK CMSCGSVFHKHCFKKLVDCPCGALLRADEATRHANSLIRGVSFGASGALDLLGKRSSS GLPVGFLSGLFSKTKPEGMEHKDNENIILMGSMPSNYL" mRNA complement(join(<921868..921894,922231..922414, 922860..923085,923572..924567,925176..926829)) /locus_tag="TCM_012095" /product="Phox domain-containing protein, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene32202" /inference="similar to AA sequence:Phytozome:GSVIVT01007724001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc920t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g458t1; inference alignment:Newbler:10:TSA:cgbaP2_g02900t00001" CDS complement(join(<921870..921894,922231..922414, 922860..923085,923572..924567,925176..926534)) /locus_tag="TCM_012095" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Phox domain-containing protein, putative isoform 3" /protein_id="EOY20752.1" /db_xref="Phytozome:GSVIVT01007724001" /db_xref="TAIR:AT3G48195.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3B8" /translation="MINGEGTRKENLAEVASPDPFDPSRSKSDGGGGGGGASTASSPH YSSCGESELERYCSANSALGTPSSIATFNDCFGESEFGSVRSVSGFGLGDDFENFSLE GSQKVPSNRRIEFPKDRIEDGRVVNVKSVEEGSSSCLVSELREEDGNSSRYEHSEGED SMYNYGMDDDECRNNSYYRKKDNDEYDTKNVNENPLGINSSVAFGSNDWDDFEQEAGT TDLASFMLDATAEREKVQGGNELQKNVNSFGEFPIGLLSSVETELVEEVKDIPVASFQ EQVADDLVEEAKSSLVNVISSQRGHEAEKYVKDIPVTRNQLQDADDDMKYLETCSVTD VFEMEQDPPIEKAPVEIGLDVLDSDRVRKHQSAHAKEVIAVDESLLSERQEIGNYKAE LDPLADCAHPVYSSQKVNAELFDDCKPDSPTSTCENIVSSSTFKNIPVPADVVEEHPG PVKMEKLELNEFYDEVVHDMEEILLESVDSPGAMFSQGNRMFQPQLSLPLRDGGSTAS TSGVDDAYSHSAHLLRIDGVEVVGAKQQKGDVSLSERLVGVKEYTVYKIRVWCGDDQW EVERRYRDFCTLHRRLKSLFSDQGWSLPSPWSSVERESRKIFGNAAPDVIAERSVLIQ ECLHSIIHSRSFSSPPSALIWFLSPQDSFPSTPPSNTLSSQSTDFSRGAHTEKISPLG KTISLIVEVRPPKPMKQILEAQHYTCAGCHKHFDDGMTLMQDLVQSLGWGKPRLCEYT GQLFCSSCHTNEMAVLPARVLHNWDFTRYPVSQLAKSYLDSIHDQPMLCVSAVNPFLF SKVPTLHHVMGIRKKIRNMLPYVRCPFRMSINKGLGSRRYLLESNDFFALRDLIDLSK GAFAALPVMVETVSRKIQEHIVEQCLICCDVGIPCSARQSCNDPSSLIFPFQVRVYPI AYCCLLPRKVRLKSVC" gene 928838..936745 /locus_tag="TCM_012096" /note="dbxref CacaoGD:Thecc1EG012096" mRNA join(928838..929665,929750..929805,930590..930701, 930856..930966,931066..931203,931864..931932, 932034..932075,932281..932349,932491..932562, 932661..932714,932830..932971,933532..933596, 933683..934908) /locus_tag="TCM_012096" /product="U3 small nucleolar ribonucleoprotein mpp10 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g02340.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08960.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g489t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g489t2" mRNA join(928859..929665,929750..929805,930590..930701, 930856..930966,931066..931203,931864..931932, 932034..932075,932281..932349,932491..932562, 932661..932714,932830..932971,933532..933594, 933683..934694,935575..935600,935872..935976, 936428..936745) /locus_tag="TCM_012096" /product="U3 small nucleolar ribonucleoprotein mpp10 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g02340.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08960.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1110t11_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g489t2" mRNA join(928859..929665,929750..929805,930590..930701, 930856..930966,931066..931203,931864..931932, 932034..932075,932281..932349,932491..932562, 932661..932714,932830..932971,933532..934691, 935063..935142,935345..935370) /locus_tag="TCM_012096" /product="U3 small nucleolar ribonucleoprotein mpp10 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g02340.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08960.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1110t6_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g489t2" mRNA join(928859..929665,929750..929805,930590..930701, 930856..930966,931066..931203,931864..931932, 932034..932075,932281..932349,932491..932562, 932661..932714,932830..932971,933532..933594, 933683..934691,935063..935142,935345..935370) /locus_tag="TCM_012096" /product="U3 small nucleolar ribonucleoprotein mpp10 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g02340.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08960.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1110t10_C1; alternateUTRof:Thecc1EG012096t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g489t2" CDS join(928940..929665,929750..929805,930590..930701, 930856..930966,931066..931203,931864..931932, 932034..932075,932281..932349,932491..932562, 932661..932714,932830..932971,933532..933596, 933683..933844) /locus_tag="TCM_012096" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="U3 small nucleolar ribonucleoprotein mpp10 isoform 1" /protein_id="EOY20753.1" /db_xref="Phytozome:POPTR_0015s08960.1" /db_xref="TAIR:AT5G66540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJY5" /translation="MATSIEAAVESLREIKSKEPPMWLVPKQELSQAVRAASKHLFSS LKPHSPKSPFDQLLIEGFDAEQIWQQIDLQSQPLLYTLRREVKKFEKNPEEISKLKEA IEGGKKKKVVEEKGTDDIDDDDDDDDDLDMDDDDDYDDDEEEEEKKERGREEESEREG EEMELEGEEKGGIEDKFLKIKELQEYLEEDEAKEYGLKKNKKTKTETKKKEEDTEEEE EGEDEEEEEEEDDDNDEAEEEEDELGLFDGDDEDDEDSLENARYEDFFGTKKNKGPKE KAKSRDRFEGDSGSDDEQDFDKRKDGLSTHEEELKKLQSKIEQMEKANLDPKVWTMRG EVTAAQRQKNSALEVDLDFEHNVRPAPVITEEVTASLEDLIKTRISEGLFDDVQKSRS LSSKAPRETKELDDNKSKKGLAEVYEEEFVQKTDPAAAPLSFSDELKKEASMLFKKLC LKLDALSHFHFTPKPVVEDMSIQTNVPALAMEEIAPMAVSDAAMLAPEEVFAGKGDIK EEAELTRSERKRRRANKKRKFKAEAAKRLAKKPRETTQVDSNEGVRKTSDLLSLSVGG QQYVFKRGRQGRLGFISTSVLLFSLSRSFISKRNKYTKS" CDS join(928940..929665,929750..929805,930590..930701, 930856..930966,931066..931203,931864..931932, 932034..932075,932281..932349,932491..932562, 932661..932714,932830..932971,933532..933594, 933683..933699) /locus_tag="TCM_012096" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="U3 small nucleolar ribonucleoprotein mpp10 isoform 2" /protein_id="EOY20754.1" /db_xref="Phytozome:POPTR_0015s08960.2" /db_xref="TAIR:AT5G66540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJY5" /translation="MATSIEAAVESLREIKSKEPPMWLVPKQELSQAVRAASKHLFSS LKPHSPKSPFDQLLIEGFDAEQIWQQIDLQSQPLLYTLRREVKKFEKNPEEISKLKEA IEGGKKKKVVEEKGTDDIDDDDDDDDDLDMDDDDDYDDDEEEEEKKERGREEESEREG EEMELEGEEKGGIEDKFLKIKELQEYLEEDEAKEYGLKKNKKTKTETKKKEEDTEEEE EGEDEEEEEEEDDDNDEAEEEEDELGLFDGDDEDDEDSLENARYEDFFGTKKNKGPKE KAKSRDRFEGDSGSDDEQDFDKRKDGLSTHEEELKKLQSKIEQMEKANLDPKVWTMRG EVTAAQRQKNSALEVDLDFEHNVRPAPVITEEVTASLEDLIKTRISEGLFDDVQKSRS LSSKAPRETKELDDNKSKKGLAEVYEEEFVQKTDPAAAPLSFSDELKKEASMLFKKLC LKLDALSHFHFTPKPVVEDMSIQTNVPALAMEEIAPMAVSDAAMLAPEEVFAGKGDIK EEAELTRSERKRRRANKKRKFKAEAAKRLAKKPRETTQVDSNEGKENE" CDS join(928940..929665,929750..929805,930590..930701, 930856..930966,931066..931203,931864..931932, 932034..932075,932281..932349,932491..932562, 932661..932714,932830..932971,933532..933594, 933683..933699) /locus_tag="TCM_012096" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="U3 small nucleolar ribonucleoprotein mpp10 isoform 2" /protein_id="EOY20755.1" /db_xref="Phytozome:POPTR_0015s08960.2" /db_xref="TAIR:AT5G66540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJY5" /translation="MATSIEAAVESLREIKSKEPPMWLVPKQELSQAVRAASKHLFSS LKPHSPKSPFDQLLIEGFDAEQIWQQIDLQSQPLLYTLRREVKKFEKNPEEISKLKEA IEGGKKKKVVEEKGTDDIDDDDDDDDDLDMDDDDDYDDDEEEEEKKERGREEESEREG EEMELEGEEKGGIEDKFLKIKELQEYLEEDEAKEYGLKKNKKTKTETKKKEEDTEEEE EGEDEEEEEEEDDDNDEAEEEEDELGLFDGDDEDDEDSLENARYEDFFGTKKNKGPKE KAKSRDRFEGDSGSDDEQDFDKRKDGLSTHEEELKKLQSKIEQMEKANLDPKVWTMRG EVTAAQRQKNSALEVDLDFEHNVRPAPVITEEVTASLEDLIKTRISEGLFDDVQKSRS LSSKAPRETKELDDNKSKKGLAEVYEEEFVQKTDPAAAPLSFSDELKKEASMLFKKLC LKLDALSHFHFTPKPVVEDMSIQTNVPALAMEEIAPMAVSDAAMLAPEEVFAGKGDIK EEAELTRSERKRRRANKKRKFKAEAAKRLAKKPRETTQVDSNEGKENE" CDS join(928940..929665,929750..929805,930590..930701, 930856..930966,931066..931203,931864..931932, 932034..932075,932281..932349,932491..932562, 932661..932714,932830..932971,933532..933686) /locus_tag="TCM_012096" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="U3 small nucleolar ribonucleoprotein mpp10 isoform 4" /protein_id="EOY20756.1" /db_xref="Phytozome:POPTR_0015s08960.1" /db_xref="TAIR:AT5G66540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJY5" /translation="MATSIEAAVESLREIKSKEPPMWLVPKQELSQAVRAASKHLFSS LKPHSPKSPFDQLLIEGFDAEQIWQQIDLQSQPLLYTLRREVKKFEKNPEEISKLKEA IEGGKKKKVVEEKGTDDIDDDDDDDDDLDMDDDDDYDDDEEEEEKKERGREEESEREG EEMELEGEEKGGIEDKFLKIKELQEYLEEDEAKEYGLKKNKKTKTETKKKEEDTEEEE EGEDEEEEEEEDDDNDEAEEEEDELGLFDGDDEDDEDSLENARYEDFFGTKKNKGPKE KAKSRDRFEGDSGSDDEQDFDKRKDGLSTHEEELKKLQSKIEQMEKANLDPKVWTMRG EVTAAQRQKNSALEVDLDFEHNVRPAPVITEEVTASLEDLIKTRISEGLFDDVQKSRS LSSKAPRETKELDDNKSKKGLAEVYEEEFVQKTDPAAAPLSFSDELKKEASMLFKKLC LKLDALSHFHFTPKPVVEDMSIQTNVPALAMEEIAPMAVSDAAMLAPEEVFAGKGDIK EEAELTRSERKRRRANKKRKFKAEAAKRLAKKPRETTQVDSNEGDYSICYSSLHIITL GTNQFLSQTLHTICR" gene complement(934438..936797) /locus_tag="TCM_012097" /note="dbxref CacaoGD:Thecc1EG012097" mRNA complement(join(934438..934693,935065..935142, 935345..935600,935872..935976,936428..936797)) /locus_tag="TCM_012097" /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein" /inference="alignment:exonerate- protein:2:ricco:30147.m013930" /inference="similar to AA sequence:ricco:30147.m013930" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13071t00001" CDS complement(join(934560..934693,935065..935142, 935345..935600,935872..935976,936428..936457)) /locus_tag="TCM_012097" /note="dbxref ricco:30147.m013930" /codon_start=1 /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein" /protein_id="EOY20757.1" /db_xref="TAIR:AT5G63000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FM52" /translation="MEAPEETTSNKTQRLAGTVNWGTATVIGVFAGMLYGGSKEAAAS VSKDAEVMLKLGSTPDKREQYRLMRDAMEKRFIRVTRGSIVGGVRLGMFTAAFCGIQN LLAEKRCVHDVFNVVGAGSATAASFGLIMPGSLQWRARNVVLGSVLGAALCFPLGWIQ LKLVEKANEGNMVAKDSVQRGEAKSGLGAAIDRLEENLNK" gene 939032..941497 /locus_tag="TCM_012098" /note="dbxref CacaoGD:Thecc1EG012098" mRNA join(939032..939933,940813..940863,941133..941497) /locus_tag="TCM_012098" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08980.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08980.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1884t1" mRNA join(939032..939933,940816..940863,941133..941497) /locus_tag="TCM_012098" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08980.1" /inference="similar to AA sequence:frave:gene32205" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b011680t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1884t1" CDS join(939111..939933,940813..940863,941133..941158) /locus_tag="TCM_012098" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20758.1" /db_xref="Phytozome:POPTR_0015s08980.1" /db_xref="TAIR:AT5G50290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XV04" /translation="MTSLFLITSFFSFLALILARPSFAAVRANSCRSYCGNLTIDYPF ALDYGCGHPGFRDLLFCMNDVLMFHISSGSYRVLDIDYAYQALTLHDPHMSTCDTIVL GGRGNGFAVEQWRSTYFNPTPDNVFMLIGCSAQSPLFQGFPGKHLPCRNVSGMGCEEY YDCPAWSLVGHKKVGSVFGSGPPECCAVPFEAIKAINLSKLECEGYSSAYSLAPLRVD GAGGWSYGIRVKYSVQGNDEFCRACEATGGACGFGSDGVTQLCMCGSFNSTTTCDSEG SASSKRTWSLVVALAGFFICMSM" CDS join(939111..939933,940816..940863,941133..941158) /locus_tag="TCM_012098" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene32205" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY20759.1" /db_xref="TAIR:AT5G50290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XV04" /translation="MTSLFLITSFFSFLALILARPSFAAVRANSCRSYCGNLTIDYPF ALDYGCGHPGFRDLLFCMNDVLMFHISSGSYRVLDIDYAYQALTLHDPHMSTCDTIVL GGRGNGFAVEQWRSTYFNPTPDNVFMLIGCSAQSPLFQGFPGKHLPCRNVSGMGCEEY YDCPAWSLVGHKKVGSVFGSGPPECCAVPFEAIKAINLSKLECEGYSSAYSLAPLRVD GAGGWSYGIRVKYSVQGNDEFCRACEATGGACGFGSDGVTQLCMCGSFNSTTTCDSGS ASSKRTWSLVVALAGFFICMSM" gene 942122..947448 /locus_tag="TCM_012099" /note="dbxref CacaoGD:Thecc1EG012099" mRNA join(942122..942717,942815..942958,943160..943321, 943447..943530,944714..944902,946278..946368, 946497..946556,946753..946871,947001..947135, 947221..947448) /locus_tag="TCM_012099" /product="Tryptophan biosynthesis 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013928" /inference="similar to AA sequence:Phytozome:GSVIVT01007720001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01958t00001" CDS join(942478..942717,942815..942958,943160..943321, 943447..943530,944714..944902,946278..946368, 946497..946556,946753..946871,947001..947135, 947221..947271) /locus_tag="TCM_012099" /codon_start=1 /product="Tryptophan biosynthesis 1" /protein_id="EOY20760.1" /db_xref="Phytozome:GSVIVT01007720001" /db_xref="TAIR:AT5G17990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q02166" /translation="MARTVFLLQSSSVSFSAFTQRRPSIKILDPRNRFLAARLDRCSY QRIVKVVSDPASGSASVSALSSEREKPSSSIGSINELIESLINRVDLTESEAEASLDF LLAEANEALISAFLVLLRAKGETFEEVVGLARAMIKHAWKLEGLNDVVDIVGTGGDGA NTVNISTGASILAAACGAKVAKQGNRSSSSACGSADVLEALGVVIDLDPEGVTSCVNE AGIGFMMSPKYHPAMKIVSPVRKKLKIKTVFNILGPMLNPARVPYAVVGVYNEDLVLK MANALQRFGMKRALVVHSEGLDEMSPLGPGQVLDVTPEKIEKFSFDPLEFGIYRCTLD DLRGGSPEYNADVLKRILAGERGHIADALILNAAAALLVSGCVKSLAEGVSLARETQL SGKALNTLSSWIDISNNMQAKALVQENSGSFS" mobile_element complement(945717..945781) /note="source:CACAO_M_E85113_F12_scaffold_10 11795 11853" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(947383..949297) /locus_tag="TCM_012100" /note="dbxref CacaoGD:Thecc1EG012100" mRNA complement(join(947383..947408,947588..947637, 948110..948254,948532..948630,948741..948829, 948977..949297)) /locus_tag="TCM_012100" /product="Glutaredoxin" /inference="alignment:exonerate- protein:2:ricco:30147.m013927" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016928t1" /inference="similar to AA sequence:ricco:30147.m013927" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00881t00001" CDS complement(join(948178..948254,948532..948630, 948741..948829,948977..949080)) /locus_tag="TCM_012100" /note="dbxref ricco:30147.m013927; paralog of Thecc1EG016928t1" /codon_start=1 /product="Glutaredoxin" /protein_id="EOY20761.1" /db_xref="TAIR:AT5G63030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3F8F3" /translation="MGSWFSSSKKSKEEIQMALDKVKQIVSSNQVVVFSKTYCGFCNR VKQLFTQLGASYKTIELNQESDGDDMQAALLEWTGQRTVPNVFIGGIHIGGCDSVVAK HQAGQLVNLLTNAGAVTVSA" mobile_element 949288..951285 /note="source:CACAO_on_E460_scaffold_3 1 1998" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 952831..955580 /note="source:CACAO_M_E12113_F79_scaffold_3 1 2750" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(957736..959181) /note="source:CACAO_M_E4783_F9_scaffold_2 10514 11948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 960092..962904 /note="source:CACAO_M_E49546_F9_scaffold_7 6255 9081" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(965722..966725) /locus_tag="TCM_012101" /note="dbxref CacaoGD:Thecc1EG012101" mRNA complement(join(965722..966012,966085..966187, 966493..966725)) /locus_tag="TCM_012101" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5348t3" CDS complement(join(965933..966012,966085..966187, 966493..966696)) /locus_tag="TCM_012101" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20762.1" /translation="MPLKLMIFMCKALPFSPFFFSFLAEAGQVVQPFSATNGACKWTL RHLVSALALHSYTFKTPGNKINSQKGDGREMQQALAEWNRQGTVPKVFVAGKHIGGSD AVVAKYEAGELLHLLVAAGSMPNIQL" gene complement(966765..976537) /locus_tag="TCM_012102" /note="dbxref CacaoGD:Thecc1EG012102" mRNA complement(join(966765..968319,968721..968935, 969514..969569,969658..969966,970242..970411, 970498..970640,970752..970896,971105..971216, 971324..971562,972040..972241,972521..972657, 973145..973280,973592..973890,976040..976537)) /locus_tag="TCM_012102" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08930.1" /inference="similar to AA sequence:ricco:30147.m013925" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g442t3" CDS complement(join(967133..968319,968721..968935, 969514..969569,969658..969966,970242..970411, 970498..970640,970752..970896,971105..971216, 971324..971562,972040..972241,972521..972657, 973145..973280,973592..973798)) /locus_tag="TCM_012102" /note="dbxref ricco:30147.m013925" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20763.1" /db_xref="TAIR:AT3G48200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3G3" /translation="MGLLKVSCVLLLSLVFSALSFKGNCDGSEFSVKFLRAPHALSHL SSAKFVFEVLGGGNGTCSDCSITCKLDYGSASDCGARKILYSGLPDGNHTFGVCINGS QGAGCSSYNWTVDTVPPTAYVTSSAPFTNALNVSVNISFTESCPGGGGFRCSSVNDCN LLVYGAGQVVPSSLIILEPNLKYSLLVAISSAAQYGRLVLVMDRSFCTDSAGNTFTRS ANSSFQVHFDRRSVFVDLRTHVPEKLLQVNSKIRTVRATNNHNNLKVYLYFSAPILNS SAEILSSLNIRQGRLLPISGEHHGNRRFGFLVANISDIAIVTISLTPNSTISRQGTPV SPVAPVTFLYDSQRTAVRLSTTSHMRTREHNVPISIKFMKPVFGFNSSLISISGGRLQ SFHEISRSIYAAEIQADDDVVSVNIPENVTGDVAGNKNLASNVLQVRHYSIPIISSVI SIFATAAFLLTCFAAGLLTMSTASLQSVGAFSRPSLSLSSDPARILFRSACHIQVFAL SRWLAVTLPVEYYELARSLEWSIPYFSLPWETGHIQPVMMGSSPSDGSTSFFSRAYDW EISNSFQPKQEEFKVAANVYGLPLSAMEYRSFFENQSMKPEADYILDKLHSNGWRDFD RSLFWLAVIGGSLVLLHVFLYFILKCKRRDFEKQGSYGALIFPRFEIFLVILALPCIC QASAALVAGGTPSGVVVGILLLGVVAFVLLSLLLFLSVGITLGKLLQYKEVHREGQQF HWYQDIIRVTLGPGKRGQWTWKKKANSVHLTMFGPLFEDLRGPPKYMVSQISGDNPSR QGDRIIASDDETEDAEAPFIQKLFGILRIYYTLLESVKRVSLGVLAGAYLNNWLSKTP VVILLCITSFQLFFLVLKKPFIKKKVQLVEIISLSCEVGMFATCFVLLEKEFSAGGET KIGIFMLMLFLFGFLAQMITEWYALYEQTKQIDTARNSFLTGLKIASIGFLLYFIPQK LMKSFESNFPAFQRGGEVTADTGVPSDRMRSTSGSRSSGTPEKPWPKQLREMAKASFS KDGSKVPTDPSSSGTKWSGFWGTKRSGSSSLSSSSDMKSKSKGLYKDLEAIFASK" gene complement(977158..981569) /locus_tag="TCM_012103" /note="dbxref CacaoGD:Thecc1EG012103" mRNA complement(join(977158..978222,979257..979585, 979727..979872,981272..981569)) /locus_tag="TCM_012103" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene32209" /inference="similar to AA sequence:frave:gene32209" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b011685t1a2; inference alignment:Newbler:10:TSA:cgbaB_g09015t00001" mRNA complement(join(977256..978222,979248..979585, 979727..979872,981272..981569)) /locus_tag="TCM_012103" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene32209" /inference="similar to AA sequence:frave:gene32209" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09015t00001" CDS complement(join(977501..978222,979257..979578)) /locus_tag="TCM_012103" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene32209" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY20765.1" /db_xref="TAIR:AT5G63010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FM51" /translation="MDVAHCYLEGNADAVEFCPHEGYQHVLAASTYTLQEGDQPSRAG SISLFDVNAEKGNLELFHRVDTAGIFDIKWSPVGGNVGPLLAQADADGYLKIYSLEGR SDGEEGGLLNAVSGEKISSSMCLFLDWNPSATSISVGLSDGSVSIISLVESGIETLQE WKAHDFELWTTCFDFQQPQLVYTGSDDCKFSCWDMRDSPAQMVFQNSKVHKMGVCCIA KSRCDPNIILTGSYDEYLRVWDLRSISRPVNETSVCLGGGVWRIKHHPFVSGLVLAAC MHNGFAIVKIGGEKPEVVETYNQHGSLAYGADWQKDKLLPVGKTKSTIVATCSFYDRL LRIWMPKSDICCI" CDS complement(join(977501..978222,979248..979578)) /locus_tag="TCM_012103" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene32209" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY20764.1" /db_xref="TAIR:AT5G63010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FM51" /translation="MDVAHCYLEGNADAVEFCPHEGYQHVLAASTYTLQEGDQPSRAG SISLFDVNAEKGNLELFHRVDTAGIFDIKWSPVGGNVGPLLAQADADGYLKIYSLEGR SDGEEGSRGGLLNAVSGEKISSSMCLFLDWNPSATSISVGLSDGSVSIISLVESGIET LQEWKAHDFELWTTCFDFQQPQLVYTGSDDCKFSCWDMRDSPAQMVFQNSKVHKMGVC CIAKSRCDPNIILTGSYDEYLRVWDLRSISRPVNETSVCLGGGVWRIKHHPFVSGLVL AACMHNGFAIVKIGGEKPEVVETYNQHGSLAYGADWQKDKLLPVGKTKSTIVATCSFY DRLLRIWMPKSDICCI" gene 987232..996475 /locus_tag="TCM_012104" /note="dbxref CacaoGD:Thecc1EG012104" mRNA join(987232..987824,988350..988472,988744..988855, 994240..994478,994599..994965,996443..996475) /locus_tag="TCM_012104" /product="KNOTTED1 homeobox gene 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010433t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007715001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2519t1" CDS join(987495..987824,988350..988472,988744..988855, 994240..994478,994599..994754) /locus_tag="TCM_012104" /note="paralog of Thecc1EG010433t1" /codon_start=1 /product="KNOTTED1 homeobox gene 6" /protein_id="EOY20766.1" /db_xref="Phytozome:GSVIVT01007715001" /db_xref="TAIR:AT1G23380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B305" /translation="MEELYGFHSSATTAVYSMDTQPAADNMLSPPGNYPAGFPSHTAA ATAFAEHMFGSGQLLSGSSGISDADSMVAEIQRGGCEEEVSSAIRAKIASHPLYPKLL QAYIDCQKVGAPPEIAKMLDEISGESDVCKRTALVPTCLGADPELDHFMETYCDLLLK YKSDLSKPFDDATTFLNNIKTQLSHLCNDEAAGSSEDDFSGGEMEALEDYQINEDREL KEKLLRKYSGYISTLKHEFSKKKKKGKLPKEARQILLDWWNVHYKWPYPTEADKVGLA EATGLDQKQINNWFINQRKRHWKPSENMQIAVMDSLCGPFFHE" gene 996522..1000269 /locus_tag="TCM_012105" /note="dbxref CacaoGD:Thecc1EG012105" mRNA join(996522..997813,997913..998023,998119..998463, 998717..998951,999274..999418,999597..1000269) /locus_tag="TCM_012105" /product="Cysteine-rich RLK 42, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016932t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007713001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc995t1" CDS join(997048..997813,997913..998023,998119..998463, 998717..998951,999274..999418,999597..999944) /locus_tag="TCM_012105" /note="paralog of Thecc1EG016932t1" /codon_start=1 /product="Cysteine-rich RLK 42, putative" /protein_id="EOY20767.1" /db_xref="Phytozome:GSVIVT01007713001" /db_xref="TAIR:AT1G19090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMB9" /translation="MRFSIPYPWNIIWMFWVFSSCFFPSPSDSQALEARLMCGTTNET SRSFVGNVNRVMGALSESVAAKGWGTFSVNDPPFNVFGLGQCYKDVKGDDCRLCLDTA REELERCIPATSGRIYLDRCFQRFDNYSFYNEGVDAKYDRATCGSPTNASIDSYIYQD FQNKLDQVIMNVTKMTLKKNGYGVTEVKGGLVTVYALAQCWKTIDAGSCGECLRNAGL GLRKCAPGAEGRAMFSGCYMRYSTNRFFDHAETDDNQGFGRWLIIGMALAATAFTVLA TIGAFISYKRLSKKKEDGLDDIPATGNQTSLSFKYEVLEKATNSFDESRKLGQGGAGS VFKGILPNGKTVAVKRLFFNTRQWVDQFFNEVNLISGVQHKNLVRLLGCSIEGPESLL VYEYVPNRSLDQILFVKNTIHILSWSQRFNIICGTAEGLAYLHGGSGAKIIHRDIKTS NILLDENLTPKIADFGLARCVASDKSHVSTAIAGTLGYMAPEYLVRGQLTEKADVYAF GVVVLEIATGRKNSVFSEGSSSILYSVWKNYKADTITQAIDSGLRGRFEEREASSVLL VGLLCTQASAALRPSMAEVVQMLTDKSCEIPSPKQPPFLNASVLSPEDTISGSFMGPL ALDEQQTGPESSSHKLGIMASLESR" gene 1002447..1009739 /locus_tag="TCM_012106" /note="dbxref CacaoGD:Thecc1EG012106" mRNA join(1002447..1003009,1003235..1003338,1004056..1004163, 1004248..1004367,1004693..1004884,1004979..1005070, 1005282..1005400,1005779..1005902,1006043..1006166, 1006707..1006775,1008350..1008441,1008570..1008647, 1009090..1009157,1009337..1009721) /locus_tag="TCM_012106" /product="Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013921.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029003t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09060.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc947t6_C2" mRNA join(1002769..1003009,1003235..1003338,1004056..1004163, 1004248..1004367,1004693..1004884,1004979..1005070, 1005282..1005400,1005779..1005902,1006043..1006166, 1006707..1006775,1008350..1008441,1008570..1008647, 1009093..1009157,1009337..1009739) /locus_tag="TCM_012106" /product="Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m013921.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029003t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09060.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc947t10_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc947t6_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc952t10" CDS join(1002895..1003009,1003235..1003338,1004056..1004163, 1004248..1004367,1004693..1004884,1004979..1005070, 1005282..1005400,1005779..1005902,1006043..1006166, 1006707..1006775,1008350..1008441,1008570..1008647, 1009090..1009157,1009337..1009470) /locus_tag="TCM_012106" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029003t1" /codon_start=1 /product="Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform 1" /protein_id="EOY20768.1" /db_xref="Phytozome:POPTR_0015s09060.1" /db_xref="TAIR:AT1G17720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39247" /translation="MNLMSTRQPSTRASPPAPLDWKFSQVFGERSAGEDVQDVDRISA VEFEKSGDYLAVGDRGGRVVIFERKDGKATPDEHYSRSQLERLDFVSLDHPEYQYKTE FQSHEPEFDYLKSLEIEEKINKVKWCTTPNGSLFILSTNDKTIKLWKVKDRKVKKAKE VDPHQFVSSENSLLAERSFVSEQDIPSFTNGNNLEWKENVANNTFASQELHAKIGNNE DATYARCRRVYAHAHDFNINSISNNSDGETFISADDLRINLWNLEISNQSFNIIDMKP LNMEDLTEVITSAEFHPIHCNLLAYGSSRGFIRLVDMRQSALCDYSARILQDAECQGS RSFFTEIVASISDIKFSVDGRHILSRDYMDLKLWDINMDSSPVATFKIHEHLRPKLCD LYNNDSIFDKFECCLSGDGLHFATGSYSNLLRIFSHGVGSEEGSTVEASKNPNSRKPL QRARRSSLSNLTRGFHKQGHENTTLGNEFSWSSSSKLQHVAWHPCANLIACASGNSLF FYYA" CDS join(1002895..1003009,1003235..1003338,1004056..1004163, 1004248..1004367,1004693..1004884,1004979..1005070, 1005282..1005400,1005779..1005902,1006043..1006166, 1006707..1006775,1008350..1008441,1008570..1008647, 1009093..1009157,1009337..1009470) /locus_tag="TCM_012106" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029003t1" /codon_start=1 /product="Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform 2" /protein_id="EOY20769.1" /db_xref="Phytozome:POPTR_0015s09060.1" /db_xref="TAIR:AT1G17720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39247" /translation="MNLMSTRQPSTRASPPAPLDWKFSQVFGERSAGEDVQDVDRISA VEFEKSGDYLAVGDRGGRVVIFERKDGKATPDEHYSRSQLERLDFVSLDHPEYQYKTE FQSHEPEFDYLKSLEIEEKINKVKWCTTPNGSLFILSTNDKTIKLWKVKDRKVKKAKE VDPHQFVSSENSLLAERSFVSEQDIPSFTNGNNLEWKENVANNTFASQELHAKIGNNE DATYARCRRVYAHAHDFNINSISNNSDGETFISADDLRINLWNLEISNQSFNIIDMKP LNMEDLTEVITSAEFHPIHCNLLAYGSSRGFIRLVDMRQSALCDYSARILQDAECQGS RSFFTEIVASISDIKFSVDGRHILSRDYMDLKLWDINMDSSPVATFKIHEHLRPKLCD LYNNDSIFDKFECCLSGDGLHFATGSYSNLLRIFSHGVGSEEGSTVEASKNPNRKPLQ RARRSSLSNLTRGFHKQGHENTTLGNEFSWSSSSKLQHVAWHPCANLIACASGNSLFF YYA" gene complement(1011903..1013729) /locus_tag="TCM_012107" /note="dbxref CacaoGD:Thecc1EG012107" mRNA complement(join(1011903..1012106,1012225..1012406, 1012671..1013003,1013088..1013729)) /locus_tag="TCM_012107" /product="Ribonuclease H protein" /inference="alignment:exonerate- protein:2:ricco:29811.m000545" /inference="similar to AA sequence:frave:gene26772" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(1012055..1012106,1012225..1012406, 1012671..1013003,1013088..1013633)) /locus_tag="TCM_012107" /note="dbxref frave:gene26772" /codon_start=1 /product="Ribonuclease H protein" /protein_id="EOY20770.1" /translation="MQVMPMPLSICQKIERLCRNFLWGSDESHRKIHLIKWEQLCRPK DEGGMGIRKLKLMNEAFLLKLLWQLRERQKVLWARILCKRYNINTTRRLESIQRSGAS NLWTAVSRLWPVVASATRCVIGDGMSVNFSKDKWLGDRTLAKITCRVAHPALDKVVVK DFLSPNGHWDHDKLCHCLPQEVFTIASAYDYWRQSSSSTDVKPSGIWQGAWKWQGPQR VRTFLFQCLHGKLMTNRERLCRKLTTEALCPLCKMEYETTIHVLWDYMMTTSLWVRII PQREQDKFFTSPLREWLVSLNTDGAYRKSSDEAAVGGVIHNEAGEWRIDFVAKLSKCS AYRAELWGMLFGLRLAWESRTNERYNWCTSTVRVTW" mobile_element complement(1014933..1016035) /note="source:CACAO_M_S_E15173_F4_scaffold_2 716 1874" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1018542..1019623) /locus_tag="TCM_012108" /note="dbxref CacaoGD:Thecc1EG012108" mRNA complement(join(1018542..1018757,1018998..1019623)) /locus_tag="TCM_012108" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(1018732..1018757,1018998..1019232)) /locus_tag="TCM_012108" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20771.1" /translation="MIECKYCHKIGHHVGKCLLLKSNGRTFKPKRDSSFGFSPIDAVT FKGNIILTTRDIKALLKQVIFSISSSYTTLFINLGPIVLFSS" mobile_element 1024782..1027779 /note="source:CACAO_M_S_E16878_F7_scaffold_3 1 2998" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1030267..1040903 /locus_tag="TCM_012109" /note="dbxref CacaoGD:Thecc1EG012109" mRNA join(1030267..1030863,1031116..1031496,1031598..1031672, 1031778..1031812,1032501..1032579,1032723..1032812, 1032891..1032966,1034272..1034350,1034422..1034550, 1037336..1037434,1037525..1037626,1037713..1037859, 1038190..1038282,1038655..1038706,1038826..1038937, 1039407..1039618,1039697..1039788,1040170..1040249, 1040394..1040436,1040549..1040903) /locus_tag="TCM_012109" /product="MORC family CW-type zinc finger protein 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s09080.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016934t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007708001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08557t00001" mRNA join(1030643..1030863,1031116..1031496,1031598..1031672, 1031778..1031812,1032501..1032579,1032723..1032812, 1032891..1032966,1034272..1034350,1034422..1034550, 1037336..1037434,1037525..1037626,1037713..1037859, 1038190..1038282,1038655..1038706,1038826..1038937, 1039490..1039618,1039697..1039719) /locus_tag="TCM_012109" /product="MORC family CW-type zinc finger protein 3 isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016934t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007708001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc517t3" CDS join(1031124..1031496,1031598..1031672,1031778..1031812, 1032501..1032579,1032723..1032812,1032891..1032966, 1034272..1034350,1034422..1034550,1037336..1037434, 1037525..1037626,1037713..1037859,1038190..1038282, 1038655..1038706,1038826..1038937,1039407..1039618, 1039697..1039788,1040170..1040249,1040394..1040436, 1040549..1040659) /locus_tag="TCM_012109" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016934t1" /codon_start=1 /product="MORC family CW-type zinc finger protein 3 isoform 1" /protein_id="EOY20772.1" /db_xref="Phytozome:GSVIVT01007708001" /db_xref="TAIR:AT1G19100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56Y74" /translation="MNCVEIVDLSSDDELGEVDVKPVKLEPGTVVGSTTKQKNNHRFQ PVELVKYKTQSGKQASEENKSSNNALSTGQSSTSFLEQGQSPGDDTGVSSTSAVSPAP VCRQFWKAGSYEGGLGSKVTLQNSKNYLHVHPLFLHSNATSHKWAFGAIAELLDNAID EIQNGATFVIVDKTSNPRDGSPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSAIGQY GNGFKTSSMRLGGDVIVFSRHLDNRSLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNV STGMLDVLHGREHFVSNLSILLQWSPYSTEAELLKQFDDIGSHGTKIIIYNLWLNNDR DSELDFDSDPKDIRISGDTKKVNTIPAWKAVNEQHIASRYHISLRVYLSILYLRIPDT FRIILRGEIVEHHNIADDLKFIEYILYRPQSFGSVEGTVVCTIGFLKEAPQVNIHGFC VYHKNRLILPFWQVVSYSDSRGRGVVGVLEANFVEPTHNKQDFERTSLFQKLEGRLKE MTWEYWDYHCGLIGYQVKKKSRPAASHVSSHFTGQSSAEQPVLLNQTSLDADRAKTGC TDVGVKQSITNSHGRSMQGLPTKRKEPGDLANLEKVKRQAGTSANTVVQPVDTTANHS KDQETIYLMQENKKLRAKCSEYEKRREELNIKVEKLRSEVGEVQREYYRLLAELNSLD IVKDENDVYM" CDS join(1031124..1031496,1031598..1031672,1031778..1031812, 1032501..1032579,1032723..1032812,1032891..1032966, 1034272..1034350,1034422..1034550,1037336..1037434, 1037525..1037626,1037713..1037859,1038190..1038282, 1038655..1038706,1038826..1038937,1039490..1039544) /locus_tag="TCM_012109" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016934t1" /codon_start=1 /product="MORC family CW-type zinc finger protein 3 isoform 2" /protein_id="EOY20773.1" /db_xref="Phytozome:GSVIVT01007708001" /db_xref="TAIR:AT1G19100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56Y74" /translation="MNCVEIVDLSSDDELGEVDVKPVKLEPGTVVGSTTKQKNNHRFQ PVELVKYKTQSGKQASEENKSSNNALSTGQSSTSFLEQGQSPGDDTGVSSTSAVSPAP VCRQFWKAGSYEGGLGSKVTLQNSKNYLHVHPLFLHSNATSHKWAFGAIAELLDNAID EIQNGATFVIVDKTSNPRDGSPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSAIGQY GNGFKTSSMRLGGDVIVFSRHLDNRSLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNV STGMLDVLHGREHFVSNLSILLQWSPYSTEAELLKQFDDIGSHGTKIIIYNLWLNNDR DSELDFDSDPKDIRISGDTKKVNTIPAWKAVNEQHIASRYHISLRVYLSILYLRIPDT FRIILRGEIVEHHNIADDLKFIEYILYRPQSFGSVEGTVVCTIGFLKEAPQVNIHGFC VYHKNRLILPFWQVVSYSDSRGRGVVGVLEANFVEPTHNKQDFERTSLFQKLEGRLKE MTWEYWTEQCRTTCSVESNFLGC" gene complement(1042249..1048007) /locus_tag="TCM_012110" /note="dbxref CacaoGD:Thecc1EG012110" mRNA complement(join(1042249..1043189,1044255..1044691, 1044802..1044997,1045519..1045526,1046012..1046158, 1046259..1046753,1047557..1047863,1047956..1048007)) /locus_tag="TCM_012110" /product="Ankyrin repeat family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g01700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012111t3" /inference="similar to AA sequence:Phytozome:GSVIVT01011219001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g561t2" gene complement(1042266..1193132) /locus_tag="TCM_012111" /note="dbxref CacaoGD:Thecc1EG012111" mRNA complement(join(1042266..1042794,1070326..1070720, 1095882..1096318,1096427..1096474,1097582..1097686, 1107585..1107734,1107829..1108320,1109038..1109401, 1109518..1109918)) /locus_tag="TCM_012111" /product="Ankyrin repeat family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046106t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02350.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc387t10; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc387t10" mRNA complement(join(1042315..1043189,1095882..1096318, 1096427..1096474,1097582..1097686,1107585..1107734, 1107829..1108320,1109038..1109401,1109518..1109618, 1193084..1193132)) /locus_tag="TCM_012111" /product="Ankyrin repeat family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g01700.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046106t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02350.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g561t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc387t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g561t4" mRNA complement(join(1042315..1043189,1044255..1044691, 1044802..1044849,1046012..1046158,1046259..1046753, 1047557..1047713)) /locus_tag="TCM_012110" /product="Ankyrin repeat family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g01700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012111t3" /inference="similar to AA sequence:Phytozome:POPTR_0008s02350.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g561t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g561t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc387t10" CDS complement(join(1042581..1043189,1095882..1096318, 1096427..1096474,1097582..1097686,1107585..1107734, 1107829..1108320,1109038..1109401)) /locus_tag="TCM_012111" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG046106t1" /codon_start=1 /product="Ankyrin repeat family protein, putative isoform 3" /protein_id="EOY20778.1" /db_xref="Phytozome:POPTR_0008s02350.1" /db_xref="TAIR:AT5G04700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U4H2" /translation="MEAHNICSSAIVAQVLNGASNYENWKACVQNYLLVRDLCDVVEQ TSEPPQQEEGDGADFKAWRKRNLSALHAIQISCDPIMLSQIRNMTTAKDAWNTLAQVC QLPMPQQAPQVPQGAPQIQVARRISRTRILELLKAIKESSLEPTKSLLTSQGHLATAA ICDSSFTTFHFTIFKGQLDMIDEFLSTMSEEDLKLQDRTGRTVLHRASTYTKNSKIAQ SLIRKNGELLTVQDCRGDIPLNYACWIGHKDMTHYLCNMTTREFLLSPENERQAALFV KDCINNKWFDVALDLLRHRPQLAFAKERTGVNAALALSCQPSGFPSSSGFSFWQRWIY SCLKVKQPKAWSREDDVHINTCELQDQKEMKNFTTQVAGQLLRLGSNLLKFFGIKQIY DLKLAHVYAHELLLLMAETIATFEIEQLYQGLVNHAIINAAQRGMMEFIVEIIKRNLD LLMMSDVDDRSIFHIAIAHRQEKVFSLIYGLDTIKYIFVSFTDKNSNNMLHLAGKLSP QSQLKLQQISGAALQMQRELQWFKEVESIIPPMYKEYRNKRGETPYEAFDQSHAKLVK EGEKWMKDRAQSSSVVGTLIITIMFAALFTVPGGPNQETGVPILLRKKHFRVFVISDA ISLSASTTSMLIFVGILTSRYTAHDFLISLPNKLIIRLSFLFISIAAMMVAFSSTVFI MLKGQLEIIIPIVVLVGFPIGLFVWLQFPLLAKIFISTYGPGIFDKKMKKWL" CDS complement(join(1042581..1042794,1070326..1070720, 1095882..1096318,1096427..1096474,1097582..1097686, 1107585..1107734,1107829..1108320,1109038..1109401)) /locus_tag="TCM_012111" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046106t1" /codon_start=1 /product="Ankyrin repeat family protein, putative isoform 1" /protein_id="EOY20776.1" /db_xref="Phytozome:POPTR_0008s02350.1" /db_xref="TAIR:AT5G04700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U4H2" /translation="MEAHNICSSAIVAQVLNGASNYENWKACVQNYLLVRDLCDVVEQ TSEPPQQEEGDGADFKAWRKRNLSALHAIQISCDPIMLSQIRNMTTAKDAWNTLAQVC QLPMPQQAPQVPQGAPQIQVARRISRTRILELLKAIKESSLEPTKSLLTSQGHLATAA ICDSSFTTFHFTIFKGQLDMIDEFLSTMSEEDLKLQDRTGRTVLHRASTYTKNSKIAQ SLIRKNGELLTVQDCRGDIPLNYACWIGHKDMTHYLCNMTTREFLLSPENERQAALFV KDCINNKWFDVALDLLRHRPQLAFAKERTGVNAALALSCQPSGFPSSSGFSFWQRWIY SCLKVKQPKAWSREDDVHINTCELQDQKEMKNFTTQVAGQLLRLGSNLLKFFGIKQIY DLKLAHVYAHELLLLMAETIATFEIEQLYQGLVNHAIINAAQRGMMEFIVEIIKRNLD LLMMSDVDDRSIFHIAIAHRQEKVFSLIYGLDTIKYIFVSFTDKNSNNMLHLAGKLSP QSQLKLQQISGAALQMQRELQWFKEVESIIPAAYKEHRNSVGQTPYEAFDQSHAELLK EGEKWMKDIAQSSTVVGTLIITIMFAALFTVPGGLNQNTGVPLLLTKKLFKLFIISDA ISLFASTTSVLMFVGILTSRYIAEDFRKSLPNKLIIGLSSLFISIAAMMVAFSSTVFI MLKGQLEIIIPIVVLVGFPIGLFVWLQFPLLAKIFISTYGPGIFDKKMKKWL" CDS complement(join(1042581..1043189,1044255..1044691, 1044802..1044997,1045519..1045526,1046012..1046158, 1046259..1046753,1047557..1047863)) /locus_tag="TCM_012110" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012111t3" /codon_start=1 /product="Ankyrin repeat family protein, putative isoform 1" /protein_id="EOY20774.1" /db_xref="Phytozome:GSVIVT01011219001" /db_xref="TAIR:AT5G04700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U4H2" /translation="MEANSVCSSAIVAQVLTGKDDYENWRACIKNYLWTRDLWDVVEQ TSEDGDWSWRMRNVSALHAIQISCDPTMLSKIRDKTTAKDAWSTLAKECGFQNENDAE EDGNVQRKSTLEFLEAIKRCDLERTKILSRADRLSANTEVRAMGNLSVFDFAIFEGQL EVIDEFVSEMAEENLGTKNHHGNTVLHYVALCSANTEIAQRLITKDKELLPIQNCEGD IPLNFACLAGHKDMTQYLYSMTTPRFLIEEENKRQAVLVVRHCIRNKLFDVALDLLLE CPQLAFAEVDGMNAVSVLSSQPSAFPSGNRLSFWQRWIYSCLKLMKKLESQIVIFPYF LSSNLQRNNYSLKLLKVYILYIGLSKSENGLNCAVTRHTLGLWSNLLKFFGMKHIYDL KQAHVHAHVLLLLMSEEIAKLDFAKVHENSVHQAIMNAAQRGMTEFIVEIIKRNLDLL VTKDVDDRDMFKIAVAHRQEKVFNLIYGLDTKKQLFLPFVDKLDNSMFHVAGKLSSES QVKLEQISGSALQMQRELQWFKEVESIIPPMYKEYRNKRGETPYEAFDQSHAKLVKEG EKWMKDRAQSSSVVGTLIITIMFAALFTVPGGPNQETGVPILLRKKHFRVFVISDAIS LSASTTSMLIFVGILTSRYTAHDFLISLPNKLIIRLSFLFISIAAMMVAFSSTVFIML KGQLEIIIPIVVLVGFPIGLFVWLQFPLLAKIFISTYGPGIFDKKMKKWL" CDS complement(join(1042581..1043189,1044255..1044691, 1044802..1044849,1046012..1046158,1046259..1046753, 1047557..1047701)) /locus_tag="TCM_012110" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012111t3" /codon_start=1 /product="Ankyrin repeat family protein, putative isoform 2" /protein_id="EOY20775.1" /db_xref="Phytozome:POPTR_0008s02350.1" /db_xref="TAIR:AT5G04700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZ99" /translation="MRNVSALHAIQISCDPTMLSKIRDKTTAKDAWSTLAKECGFQNE NDAEEDGNVQRKSTLEFLEAIKRCDLERTKILSRADRLSANTEVRAMGNLSVFDFAIF EGQLEVIDEFVSEMAEENLGTKNHHGNTVLHYVALCSANTEIAQRLITKDKELLPIQN CEGDIPLNFACLAGHKDMTQYLYSMTTPRFLIEEENKRQAVLVVRHCIRNKLFDVALD LLLECPQLAFAEVDGMNAVSVLSSQPSAFPSGNRLSFWQRWIYSFTRHTLGLWSNLLK FFGMKHIYDLKQAHVHAHVLLLLMSEEIAKLDFAKVHENSVHQAIMNAAQRGMTEFIV EIIKRNLDLLVTKDVDDRDMFKIAVAHRQEKVFNLIYGLDTKKQLFLPFVDKLDNSMF HVAGKLSSESQVKLEQISGSALQMQRELQWFKEVESIIPPMYKEYRNKRGETPYEAFD QSHAKLVKEGEKWMKDRAQSSSVVGTLIITIMFAALFTVPGGPNQETGVPILLRKKHF RVFVISDAISLSASTTSMLIFVGILTSRYTAHDFLISLPNKLIIRLSFLFISIAAMMV AFSSTVFIMLKGQLEIIIPIVVLVGFPIGLFVWLQFPLLAKIFISTYGPGIFDKKMKK WL" mRNA complement(join(<1043067..1043189,1044255..1044292, 1095920..1096318,1096427..1096474,1097582..1097686, 1107585..1107734,1107829..1108320,1109038..1109401, 1109518..1109918)) /locus_tag="TCM_012111" /product="Ankyrin repeat family protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046106t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011219001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc387t19; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc387t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g561t4" CDS complement(join(<1043067..1043189,1044255..1044292, 1095920..1096318,1096427..1096474,1097582..1097686, 1107585..1107734,1107829..1108320,1109038..1109401)) /locus_tag="TCM_012111" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG046106t1" /codon_start=1 /product="Ankyrin repeat family protein, putative isoform 4" /protein_id="EOY20779.1" /db_xref="Phytozome:GSVIVT01011219001" /db_xref="TAIR:AT5G04730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U4H2" /translation="MEAHNICSSAIVAQVLNGASNYENWKACVQNYLLVRDLCDVVEQ TSEPPQQEEGDGADFKAWRKRNLSALHAIQISCDPIMLSQIRNMTTAKDAWNTLAQVC QLPMPQQAPQVPQGAPQIQVARRISRTRILELLKAIKESSLEPTKSLLTSQGHLATAA ICDSSFTTFHFTIFKGQLDMIDEFLSTMSEEDLKLQDRTGRTVLHRASTYTKNSKIAQ SLIRKNGELLTVQDCRGDIPLNYACWIGHKDMTHYLCNMTTREFLLSPENERQAALFV KDCINNKWFDVALDLLRHRPQLAFAKERTGVNAALALSCQPSGFPSSSGFSFWQRWIY SCLKVKQPKAWSREDDVHINTCELQDQKEMKNFTTQVAGQLLRLGSNLLKFFGIKQIY DLKLAHVYAHELLLLMAETIATFEIEQLYQGLVNHAIINAAQRGMMEFIVEIIKRNLD LLMMSDVDDRSIFHIAIAHRQEKVFSLIYGLDTIKYIFVSFTDKNSNNMLHLAGKLSP QSQLKLQQISGAALQMQRELQWFKEVESIIPPMYKEYRNKRGETPYEAFDQSHAKLVK EGEKWMK" mobile_element 1049326..1049436 /note="source:scaffold_8_CACTA_0859 16268 16383" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1055212..1055564) /note="source:INTACT89_F140_scaffold_9-int 2021 2358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1056419..1057430) /note="source:INTACT622F_F362_scaffold_4-int 10274 11290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1059399..1062383 /note="source:CACAO_M_E12119_F15_scaffold_3 1 2985" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1059439..1069307) /locus_tag="TCM_012113" /note="dbxref CacaoGD:Thecc1EG012113" mRNA complement(join(1059439..1059473,1064301..1064537, 1064655..1064696,1065971..1066076,1066664..1067176, 1067399..1067711,1069151..1069307)) /locus_tag="TCM_012113" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012111t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(join(1067128..1067176,1067399..1067711, 1069151..1069229)) /locus_tag="TCM_012113" /note="paralog of Thecc1EG012111t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20780.1" /translation="MLGTLWPKCANCLCPQQAPQDAPQIPVIDGSERWRIMSVVRDIK QHSLNEDNLYLANAEICWSGHRVLHFAVFEGQLKMIDKFLSRMSTKDLKMQDTYGRTA LHHAAMSSKNTKIAQSLIRKNRELLMQVRCCFGSAQSSSTINIR" mRNA complement(join(1069889..1070720,1075405..1075498, 1095882..1096318,1096427..1096474,1097582..1097686, 1107585..1107734,1107829..1108320,1109038..1109401, 1109518..1109618,1193084..1193132)) /locus_tag="TCM_012111" /product="Ankyrin repeat family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046106t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011219001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g561t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g561t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc387t10" CDS complement(join(1070689..1070720,1075405..1075498, 1095882..1096318,1096427..1096474,1097582..1097686, 1107585..1107734,1107829..1108320,1109038..1109401)) /locus_tag="TCM_012111" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046106t1" /codon_start=1 /product="Ankyrin repeat family protein, putative isoform 2" /protein_id="EOY20777.1" /db_xref="Phytozome:GSVIVT01011219001" /db_xref="TAIR:AT5G04730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U4H2" /translation="MEAHNICSSAIVAQVLNGASNYENWKACVQNYLLVRDLCDVVEQ TSEPPQQEEGDGADFKAWRKRNLSALHAIQISCDPIMLSQIRNMTTAKDAWNTLAQVC QLPMPQQAPQVPQGAPQIQVARRISRTRILELLKAIKESSLEPTKSLLTSQGHLATAA ICDSSFTTFHFTIFKGQLDMIDEFLSTMSEEDLKLQDRTGRTVLHRASTYTKNSKIAQ SLIRKNGELLTVQDCRGDIPLNYACWIGHKDMTHYLCNMTTREFLLSPENERQAALFV KDCINNKWFDVALDLLRHRPQLAFAKERTGVNAALALSCQPSGFPSSSGFSFWQRWIY SCLKVKQPKAWSREDDVHINTCELQDQKEMKNFTTQVAGQLLRLGSNLLKFFGIKQIY DLKLAHVYAHELLLLMAETIATFEIEQLYQGLVNHAIINAAQRGMMEFIVEIIKRNLD LLMMSDVDDRSIFHIAIAHRQEKVFSLIYGLDTIKYIFVSFTDKNSNNMLHLAGKLSP QSQLKLQQISGAALQMQRELQWFKSSDLSRRFGENPSRTSLPKNPPEIGNSLPFLGGG KHYTSCV" mobile_element 1074042..1074416 /note="source:INTACT59_F126_scaffold_9-int 36 425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1074087..1076487) /note="source:INTACT89_F140_scaffold_9-int 1 1910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1076488..1083740 /note="source:INTACT59_F126_scaffold_9-int 2531 9767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1083737..1088550 /note="source:INTACT59_F126_scaffold_9-int 10133 14774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1088179..1089467) /note="source:INTACT72F_F343_scaffold_2-int 11435 13821" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1089397..1089794 /note="source:INTACT1330F_F382_scaffold_8-int 1037 1402" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1089438..1090571) /note="source:INTACT72F_F343_scaffold_2-int 9105 10258" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1091408..1096345 /locus_tag="TCM_012115" /note="dbxref CacaoGD:Thecc1EG012115" mRNA join(1091408..1091844,1092479..1092593,1093873..1094139, 1094285..1094416,1094501..1094583,1094814..1094898, 1095001..1095164,1095266..1096345) /locus_tag="TCM_012115" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma07g34840.1" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS join(1091645..1091844,1092479..1092593,1093873..1094139, 1094285..1094416,1094501..1094583,1094814..1094898, 1095001..1095164,1095266..1095368) /locus_tag="TCM_012115" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20781.1" /db_xref="Phytozome:Glyma07g34840.1" /translation="MVTTSFSTYAFLMFNEDNYAFWVVKIKSYLKAFNLWDTVETKTE PVLRNVNPTIAQLNQHEEDIAKRSCNQLGHVVKVCKNKSAAFDEKATIDEKVEAFDEV LFMNARWNWEKLTIEHCANIRLVNEEAVNEEDQGSDMSRAVRSTRSLQDIYVSCNVAV CEPTTYSKATKDDRWLKTMGEEMQMILKNGTWILTFAPVARHDTIRLLTALAAKEGLQ NWHLDVKSAFLNGFLTKDIYALRARYERIDTYLTSQGSREVQMSTHYMSQMEECKPVD IPLAINYKLSEGDGSLSAQPSQTHYLATKRVLRYIKGIFDYGLKFEKKASNELVGFCD SDWAGSVDDSKSTTSSFKSYDLVKESHIKVKVYAIREAIKDEEVDAQH" mobile_element 1097819..1102454 /note="source:INTACT15_F109_scaffold_3-int 1 4636" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1106834..1107416 /note="source:CACAO_M_E1841_F5_scaffold_1 26508 27091" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1109745..1168928) /locus_tag="TCM_012116" /note="dbxref CacaoGD:Thecc1EG012116" mRNA complement(join(1109745..1110034,1145235..1145853, 1146730..1146776,1152783..1152932,1153037..1153525, 1153950..1154277,1167722..1167811,1168803..1168928)) /locus_tag="TCM_012116" /product="Ankyrin repeat family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02350.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012129t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02350.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g605t1" gene 1117062..1119487 /locus_tag="TCM_012118" /note="dbxref CacaoGD:Thecc1EG012118" mRNA join(1117062..1117267,1117405..1117442,1118785..1119487) /locus_tag="TCM_012118" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044721t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(1117142..1117267,1117405..1117442,1118785..1119079) /locus_tag="TCM_012118" /note="paralog of Thecc1EG044721t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20783.1" /translation="MFDSMVRTLKVRHAPNIKKNLISLSLLDKKGYKLGGQDGVFKIR PYEQDMDDKTRGCPRLAEIGGALRDNSGCVKIIFSKSLGVADLNLAEITSIKEAFLLF AAFPWALSHELTVESNSFKVVKWCNDSPSAPWRMKSLLNFTNSMKRKILK" mobile_element complement(1122121..1122135) /note="source:CACAO_M_S_E144426_F33_scaffold_10 10080 10094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1122136..1125087 /note="source:CACAO_M_E12124_F15_scaffold_3 1 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1129540..1131638 /note="source:CACAO_Mutator_E1149_scaffold_5 355 2481" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1131633..1132098) /note="source:scaffold_8_CACTA_0857 1639 2104" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1132100..1138764 /note="source:CACAO_M_E22965_F8_scaffold_4 1429 8137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1137976..1142906) /note="source:CACAO_M_E57101_F8_scaffold_8 1 5109" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(1145245..1145853,1146730..1146776, 1152783..1152932,1153037..1153525,1153950..1154277)) /locus_tag="TCM_012116" /note="paralog of Thecc1EG012129t1" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY20782.1" /db_xref="Phytozome:POPTR_0008s02350.1" /db_xref="TAIR:AT3G18670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC67" /translation="MDANNVCSSAIVAQVLNGASNYENWKACVQNYLWVRDLWDVVEQ TPEPPQQEDKAEFKGWSKRNVAALHAIQISCDPIMLSSISNMTTAKDAWNTLAQMCQL PIPEEAPVAEFIDRTHMLELLKAIKECALESTKGVLTSHTHLANTVIGDSSFAAFHFA IFKGQLDMIDEFLSTMSEEHLKMQDRYGRTVLHHAAMSENTKIAQSLIRKNRELLTFP DSGGNIPLNSACWVGHKDMTHYLYNMTSREFLLSPGNECQAALFVCDCINNKWFDVAL NLLCRHPHLAFVEGEDGISAITALSCQPSAFPSGSGFSFWQRWIYSFCPYFEARLSKY LDNPEVEGVVPPMLKKHKNEEGETPYEAFDQSHARLLKEGEKWMKDIAQSSMIVGTLI ITIMFATLFTIPGGLSQDTGVPFLLTKKLVKVFIISDAISLFASTTSVLMFVGILTSR YTTHDFLKSLPNKLMIGLSSLFISIATMMVAFSSTAIIMLKGQLEIVIPIVLLASIPI GLFVWLQFPLLVKIFISTYGLGIFDRKMKKWL" mobile_element complement(1147721..1148919) /note="source:INTACT257_F186_scaffold_6-int 17150 18314" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1160080..1160157) /note="source:scaffold_1_CACTA_0016 6343 6420" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1161968..1166045 /note="source:INTACT170F_F2_scaffold_3-int 1 4078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1166208..1166587) /note="source:CACAO_M_S_E16683_F28_scaffold_2 1654 1955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1167728..1167799 /note="source:CACAO_M_E57346_F74_scaffold_9 5056 5124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1168290..1172715 /note="source:INTACT273_F38_scaffold_3-int 1 4426" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1173034..1185688) /locus_tag="TCM_012122" /note="dbxref CacaoGD:Thecc1EG012122" mRNA complement(join(1173034..1174593,1178091..1178274, 1178432..1178820,1183100..1183278,1183363..1183614, 1183759..1183981,1185201..1185688)) /locus_tag="TCM_012122" /product="Binding-like protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G04730.1.3" /inference="similar to AA sequence:ricco:30190.m011164" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc400t28" CDS complement(join(1173994..1174593,1178091..1178274, 1178432..1178820,1183100..1183278,1183363..1183614, 1183759..1183981,1185201..1185575)) /locus_tag="TCM_012122" /note="dbxref ricco:30190.m011164" /codon_start=1 /product="Binding-like protein" /protein_id="EOY20784.1" /db_xref="TAIR:AT5G04700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC67" /translation="MSNMIAASDVAQFNQSSVDQAIFNAAQWGITEFIVEIIKPNLDL LMIYDQHLRNIFQIAIAHRQEKVFSLIYGLDTIKYLFLPFRDRMGNNMLHLAGKLSPE SQLKLQKISGAALQMQRELQWFKLKKVDVKVEEDEKASLPDSYEVFVESLICGMDTMT LEQAQATLMSREARKKSKEGDRDPSDLALVTGVCRRKSTGDDCDVLTILENMNANSDW YLDSAFTTHICYQKDCFDLLQERVVGNLTLGNKSIVKVMGLRVVKVKMFDGVVCSSGG VAYVPKMRDMVLMRGNLHNGLYHLKCEASKGWEQCTGDGSYQSEISFAEEVVEGSHGV DDGERTKNLSICRWSHGFPYGRLPQPVASLLTWVGSSFQRRQIWWRDGRAPSPVGELL IAASVKSALPFSVDKIWWRNGLVPSHAGELLLAASLKSALPNRQQIWWRDGLVPSHAD ELLLAASLKLALPNRRQTLSRNRIILLQVPPLPMLQCPLSFIPDSRVLEGARSIALSL GTRGQVPLSCQTRIFRVWQVREVPGRELESIVPPRFDQNNKGETPYEAFDRSHAELVK EGEKWMKDIAQSSTVVGTLIITIMFAALFTVPGGPDQDTGVPLLLKNKPFKVFIISDA ISLFASTTSVLIFVGILTSRYTADDFLKSLPNKLIIGLSSLFISIATMMVAFSSTVII MVKGQLEIVIPIVLLAGIPIGLFVWLQFPLLVKIFISTYGPGIFDRKMKWV" mobile_element 1177981..1178171 /note="source:CACAO_M_E69938_F9_scaffold_9 3535 3736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1178009..1179460 /note="source:CACAO_M_E44210_F112_scaffold_5 10010 11403" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1178919..1179536) /note="source:CACAO_M_E12044_F76_scaffold_2 5590 6195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1179804..1181056 /note="source:CACAO_M_E44210_F112_scaffold_5 11689 12913" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1182336..1184914 /note="source:CACAO_M_S_E16895_F74_scaffold_3 1 2579" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1186681..1187578) /locus_tag="TCM_012124" /note="dbxref CacaoGD:Thecc1EG012124" mRNA complement(join(1186681..1186905,1186986..1187578)) /locus_tag="TCM_012124" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012116t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6781t2" CDS complement(join(1186857..1186905,1186986..1187323)) /locus_tag="TCM_012124" /note="paralog of Thecc1EG012116t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20785.1" /translation="MIDEFLSTMSEDDLKMQDCYGRTVLHHAAMSTENTKIAQSLIRK NRELLTIPENRGDIPLNVASWVGHKDMTHYLYNMTSPEFLLSLENERQAALFLGDCIR NKWFGKSEIYRCCFGSALSSSRVSIC" mobile_element complement(1187915..1188335) /note="source:CACAO_M_E86045_F74_scaffold_12 1439 1852" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1188357..1189567 /locus_tag="TCM_012125" /note="dbxref CacaoGD:Thecc1EG012125" mRNA join(1188357..1188541,1188646..1189060,1189199..1189567) /locus_tag="TCM_012125" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012137t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS join(1188405..1188541,1188646..1189060,1189199..1189423) /locus_tag="TCM_012125" /note="paralog of Thecc1EG012137t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20786.1" /translation="MSDGCSYTKVDHPKEKEGYKLCFHQVSGGMRNANHNKMEESEKD QWDFKVVVISESSRRNINEEGIEGKKISKKVSKQANGVKLGISNWKSAREQEPDQAKA HKRHGKTITIKTTVPEEEMALVKCSAVGRSRTKISCNVIQSGLFAEGRLAQIKALESM AVLVTFVDKDDMEVLLEKYLELFKVIAVDKSTYKRERFDQAFMLVEANSILEIPTRVS IEVEGIVSNVCVSIVGVEDMCSLEQYLKDKKEMKVGGKKT" mobile_element complement(1190114..1190551) /note="source:scaffold_5_CACTA_0614 7 404" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1190528..1190653 /note="source:scaffold_5_CACTA_0614 3376 3499" /mobile_element_type="transposon:TIR/CACTA" gene complement(1190713..1195078) /locus_tag="TCM_012126" /note="dbxref CacaoGD:Thecc1EG012126" mRNA complement(join(1190713..1190995,1191846..1192272, 1192390..1192872,1194986..1195078)) /locus_tag="TCM_012126" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046106t1" /inference="similar to AA sequence:ricco:30190.m011165" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc400t4" CDS complement(join(1190979..1190995,1191846..1192272)) /locus_tag="TCM_012126" /note="dbxref ricco:30190.m011165; paralog of Thecc1EG046106t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20787.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC68" /translation="MEAHNICSGAIVAQVLTGKDNYENWRACIKNYLFVKDLWDVVEQ TSEPPQQEEGDGADFKAWRKRNVSALHAIQISCDPIMLSHIRNMTTAKDAWNTLAQVC QLPMPQDAPQITEDASQIIEEAPQITEDAPQIVEDAPQIPGGWWR" mobile_element complement(1194385..1195213) /note="source:INTACT556_F252_scaffold_2-int 15446 16280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1195715..1195844) /note="source:INTACT579_F10_scaffold_3-int 3188 3317" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1201955..1203366) /locus_tag="TCM_012128" /note="dbxref CacaoGD:Thecc1EG012128" mRNA complement(join(1201955..1202164,1202182..1202854, 1203265..1203366)) /locus_tag="TCM_012128" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046111t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s09070.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS complement(join(1202109..1202164,1202182..1202854)) /locus_tag="TCM_012128" /note="paralog of Thecc1EG046111t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20788.1" /db_xref="Phytozome:POPTR_0012s09070.1" /translation="MEANNVCSSAIVGQVLIGAYNYENWKACVQNHLSRNLLSCEIPS SLGNLLRLERLNLSFNRLQGEVPSSLGKLTSLNMLNLSNNHLQGALPFTFSGFPLSSF SGNDKLCGPPLSSCMDLTGHEKNKLSNSVVICIIVAIVFTSAVIYLVLIYIMLRIWCN WRKVSISNSEGAGIEQKREEEKWVYGDEKKRKGEYWRVNSMALVPSQKEHISSSCIFH VKMDTQRYREILLFHASNLVSFSL" mobile_element complement(1203214..1203657) /note="source:INTACT174_F38_scaffold_5-int 478 938" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1203588..1211438) /locus_tag="TCM_012129" /note="dbxref CacaoGD:Thecc1EG012129" mRNA complement(join(1203588..1204819,1208566..1209002, 1209284..1209772,1210710..1211037,1211161..1211438)) /locus_tag="TCM_012129" /product="Ankyrin repeat family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g01700.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046106t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s02350.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Velvet:11:TSA:cacao3vel5scxLoc160t4" gene complement(1204062..1253782) /locus_tag="TCM_012130" /note="dbxref CacaoGD:Thecc1EG012130" mRNA complement(join(1204062..1204270,1253161..1253782)) /locus_tag="TCM_012130" /product="Ankyrin repeat family protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G04690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012129t1" /inference="similar to AA sequence:ricco:30190.m011164" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1SvscxLoc146t7" CDS complement(join(1204211..1204819,1208566..1209002, 1209284..1209772,1210710..1211037)) /locus_tag="TCM_012129" /note="paralog of Thecc1EG046106t2" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY20789.1" /db_xref="Phytozome:POPTR_0008s02350.1" /db_xref="TAIR:AT3G18670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC67" /translation="MEVNNFCSSAIVAQVLNGKDNYENWKACAKNYLWVRDLWDVVEQ TSEPPQQEDKAEFKAWSKRNVAALHAIQISCDAIMLSHIRNMTTAKDAWNTLAQKCQL PMKEETSVARFIDRTHMLELLKAVKEHALESTKSVLTSHTHLANAVIGDSSFTTFHFA IFDGQLDMIDEFLSTMSEEHLKMLDRHGRTVLHHAAMTENTKIAQSLIRKSRELLTFL DNRGYIPLNAACLGGHKDMTHYLYNMTTREVLLSPENECQAALFVCQCINNKWFGIKQ IYDLKATHIYAHELLLLMSKTIAASDVAQFDQSSVHQAMLNAAQRGVTEFIVEVIKPN IDLLMVLDEERRNIFQIAVAHRQEKVFSLIYGLDAIKYPLIAYTERDYNNMLHLAGQL SPQSQVKLQQISGAALQMQRELQWFKEVEGIIPPMLKQHTNKEGETPYEAFDRSHANL VKEGEKWMKDIAQTSTIVGTLIITIMFAALFTVPGGPDQDTGVPLLLTKKLFKIFIIS DSISLFASTTSVLIFVGILTSRYTAPDFLKSLPNKLIIGLSSLFISIVAMMVSFSSTV IIMVKGQLEIVIPIVLLAGIPIGLFVWLQFPLLVKIFISTYGPGIFDRKMKQWL" CDS complement(join(1204270,1253161..1253741)) /locus_tag="TCM_012130" /note="dbxref ricco:30190.m011164; paralog of Thecc1EG012129t1" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY20790.1" /db_xref="TAIR:AT5G04700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC67" /translation="MLKLHTNGKEETPYETFDRSHANLVKEGEKWMKDIAQTSTVVGT LIITIMFAALFTVPGGPDQDTGVPLLLRKKLFKIFIISDSISLFASTTSVLMFVGILT SRYTADDFLKSLPNKLIIGLSSLFISIAAMMVAFSSTVIIMVKGQLEIVIPIVLLAGI PIGLFVWLQFPLLVKIFISTYGPGIFDRKMKWL" mobile_element complement(1215879..1218282) /note="source:scaffold_5_CACTA_0591 4823 7238" /mobile_element_type="transposon:TIR/CACTA" gene 1222968..1226901 /locus_tag="TCM_012133" /note="dbxref CacaoGD:Thecc1EG012133" mRNA join(1222968..1223148,1225751..1225818,1226176..1226901) /locus_tag="TCM_012133" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.55 coverage" CDS join(1225792..1225818,1226176..1226394) /locus_tag="TCM_012133" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20791.1" /translation="MTPEISFRKVSLGIGLSKGLSKLDGYTTDESGTLGSMGLALIGL GCNKGGSGEPTSSSRGIYSSNVLSCASPSTVVRAPPA" gene 1233350..1235542 /locus_tag="TCM_012134" /note="dbxref CacaoGD:Thecc1EG012134" mRNA join(1233350..1233477,1233649..1234200,1234268..1234570, 1234729..1235542) /locus_tag="TCM_012134" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01875.1.8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031451t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400025287" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS join(1233463..1233477,1233649..1234200,1234268..1234570, 1234729..1234929) /locus_tag="TCM_012134" /note="paralog of Thecc1EG031451t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20792.1" /db_xref="Phytozome:PGSC0003DMP400025287" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B034" /translation="MKNRKLKILITWEKVVCKPKRFGELGITNLSYKNLTLLAKWWWR YGTDKDALWRRLIMEKYGAGQPHWIPSSSSTARMSSIWRSIVQLPSIEGMQNLVGFHA YRWIVGNGETICFWFDKWIDDIPLASKFPRLFSLAVDKDMRVLDACQNGLWSINFRRV LYSWEKEDLDRILNSLSSVSLVPLRDDKLVTPTQSGFTPFGNWFFPQRSNASYGWRSS TLSLRKSSSLYVESISPPTSIVVCGVAKLRSVVRTSFSPAHSVGEFGDMFLNGGGSLG VLCVLYPLLCKLGKIRASEGVDAIDDLEWWTDPCLSSKRKAPHHHHVGTSWSPPPTGE FKFNVNGSAKGKPGPAGCDGIL" mobile_element 1237846..1238203 /note="source:CACAO_M_E35674_F13_scaffold_5 3326 3680" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1238779..1241741 /note="source:CACAO_M_E69760_F9_scaffold_9 6707 9649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1241930..1242022) /note="source:scaffold_5_CACTA_0591 6384 6474" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1242024..1244982) /note="source:INTACT627_F278_scaffold_9-int 7971 10930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1248087..1249424) /note="source:CACAO_M_E3780_F76_scaffold_1 7069 8421" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1250652..1250703 /note="source:CACAO_M_E49556_F134_scaffold_7 2035 2089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1258747..1258865) /note="source:scaffold_5_CACTA_0610 5151 5279" /mobile_element_type="transposon:TIR/CACTA" gene 1259514..1260223 /locus_tag="TCM_012137" /note="dbxref CacaoGD:Thecc1EG012137" mRNA 1259514..1260223 /locus_tag="TCM_012137" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012125t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 1259531..1260085 /locus_tag="TCM_012137" /note="paralog of Thecc1EG012125t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20793.1" /translation="MALVKCSAVGRSRTKISCNVIQWGLFAESISAQVRVLESMAVLV TFGDKDDMEVLLEKYLELFKVWFEALSPYSTVCKARQVRVLVWLSEVLLYTCHNNMFR LKKERWVKFIAVDKSTYRRERFDQAFTLVEANSILETPARASIEAERIVFIVCVSIVG VEDKCLLEQYLKDKKEMKVGGKKT" mobile_element 1267428..1267657 /note="source:scaffold_8_CACTA_0858 14212 14456" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1269631..1273300 /note="source:INTACT174_F38_scaffold_5-int 784 4434" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1275104..1275149) /note="source:CACAO_M_E52765_F10_scaffold_8 1 47" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1275164..1279857 /note="source:CACAO_M_E12133_F133_scaffold_3 1 4694" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1279769..1284079) /locus_tag="TCM_012140" /note="dbxref CacaoGD:Thecc1EG012140" mRNA complement(join(1279769..1279878,1281263..1281397, 1282088..1282293,1282375..1282500,1283980..1284079)) /locus_tag="TCM_012140" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(1279833..1279878,1281263..1281397, 1282088..1282293,1282375..1282500,1283980..1283994)) /locus_tag="TCM_012140" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20794.1" /translation="MAAKGVDYENVSTGMLNVLHGREHFVFNLSILLQWSPYSTEAEL LKPKDRDDFINTLLYKKGHRRLELQISSIETDYTSSTTPSVGNEIKRTTIKIIITAQP KESPSSYTLQSKNLYLHFDEFVSHGTKIIYNLWLNNDGDSELDFDPDPKVQISFCILF VHFGRLLAVRLLRSY" mobile_element 1284805..1285260 /note="source:INTACT1330F_F382_scaffold_8-int 2562 3017" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1285361..1285938 /note="source:INTACT1330F_F382_scaffold_8-int 3020 3610" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1285632..2120772 /locus_tag="TCM_012142" /note="dbxref CacaoGD:Thecc1EG012142" mRNA join(1285632..1285722,2120028..2120507,2120624..2120772) /locus_tag="TCM_012142" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044705t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2208t1" CDS join(1285701..1285722,2120028..2120461) /locus_tag="TCM_012142" /note="paralog of Thecc1EG044705t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20795.1" /translation="MKQRDTEPTINRVDPIAYMESSWSSSSYDGIYQVTQHMASTQQS EGDCLSKDHFSSLPDRVHLDLKQNDFTDLLNIWDKWGATTRANFDRKYGHIARLLKVQ VDEQLLKAIVQFWDPSYRCFVFNKVDMVPTIEEYSALLQIDLDNPDKIY" mobile_element 1286401..1288015 /note="source:INTACT1330F_F382_scaffold_8-int 4073 5679" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1287828..1294896 /locus_tag="TCM_012144" /note="dbxref CacaoGD:Thecc1EG012144" mRNA join(1287828..1288008,1291177..1291273,1293761..1293827, 1294241..1294896) /locus_tag="TCM_012144" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004722t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS join(1287857..1288008,1291177..1291273,1293761..1293827, 1294241..1294287) /locus_tag="TCM_012144" /note="paralog of Thecc1EG004722t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20796.1" /translation="MDATELCLVPDVLIPAKFKVPEFEKYDGTKCPMAHITMYCRKMA AQSHDDKSLNNEHEDNLDNDLNIDFEIIPNIDELKNEEEVDSRGSPGTELEFTWISSD SKLVRDGFSPKRRDKSEL" mobile_element 1291150..1291426 /note="source:INTACT1330F_F382_scaffold_8-int 5583 5859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1291869..1292557 /note="source:INTACT1330F_F382_scaffold_8-int 9532 10219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1293304..1293605) /note="source:INTACT1306F_F379_scaffold_7-int 1287 1588" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1293756..1293799) /note="source:scaffold_5_CACTA_0607 17029 17072" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1293791..1295196) /note="source:INTACT72F_F343_scaffold_2-int 9105 10601" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1295415..1303584) /locus_tag="TCM_012145" /note="dbxref CacaoGD:Thecc1EG012145" mRNA complement(join(1295415..1295511,1296551..1297169, 1298300..1298884,1303415..1303584)) /locus_tag="TCM_012145" /product="Ankyrin repeat family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012129t1" /inference="similar to AA sequence:ricco:30190.m011164" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" mobile_element complement(1296065..1296360) /note="source:CACAO_M_E170_F10_scaffold_1 3368 3640" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(1296567..1297169,1298300..1298344)) /locus_tag="TCM_012145" /note="dbxref ricco:30190.m011164; paralog of Thecc1EG012129t1" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY20797.1" /db_xref="TAIR:AT5G04700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC67" /translation="MLELQNISPNKSFRQEVEAIVPPLLKEHINKERETPYEAFDRSH AGLVKEGEKWMKGIAQSSTIVGTLIITIMFAAFFTVPGGLSQDTGIPLLLTKKLFKVF IISDAISLFASTTSVLMFVGILTSRYAAHDFFKSLPNKLIIGLSFLFISIATMMVAFS STAIIMLKGQLEIVILIVLLAGIPISLFVWLQFPLLVKAFISTYGPKIFDRKMKK" gene complement(1304051..1305162) /locus_tag="TCM_012146" /note="dbxref CacaoGD:Thecc1EG012146" mRNA complement(join(1304051..1305000,1305122..1305162)) /locus_tag="TCM_012146" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012150t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s09070.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(1304472..1304987) /locus_tag="TCM_012146" /note="paralog of Thecc1EG012150t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20798.1" /db_xref="Phytozome:POPTR_0012s09070.1" /translation="MFVRVQLLVKFLNGPYNYENWKACVQNYLSRNLLSGEIPSSLGN LLKLERLNLSFNRLQGEVPSSLGKLTSLDMLNLSNNHLQGELPSTFSGFPLSSFSGND KLCGPPLSSCMDSAGHEKNKLSNTAVICIILAIVFTSTVICLVLIYIMLRIWCNWRKV PIFNSEGAGIE" mobile_element complement(1305851..1305916) /note="source:scaffold_10_CACTA_0128 5319 5384" /mobile_element_type="transposon:TIR/CACTA" gene 1307507..1308128 /locus_tag="TCM_012147" /note="dbxref CacaoGD:Thecc1EG012147" mRNA 1307507..1308128 /locus_tag="TCM_012147" /product="Galactose-1-phosphate uridylyltransferase, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011216001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15989t00001_G3" CDS 1307815..1308108 /locus_tag="TCM_012147" /codon_start=1 /product="Galactose-1-phosphate uridylyltransferase, putative" /protein_id="EOY20799.1" /translation="MLASKTIGITIFNWPFTMIMTVEEKATIIDAIDMKREESPMINL LGKDLRKSCVVYRDVRMPTNINTEVVEAKREIESDIMNILKSFFVKSKGTPVS" gene complement(1310427..1314221) /locus_tag="TCM_012148" /note="dbxref CacaoGD:Thecc1EG012148" mRNA complement(join(1310427..1311867,1312528..1312644, 1312877..1313252,1313695..1313994,1314125..1314221)) /locus_tag="TCM_012148" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011216001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012129t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02350.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(1311407..1311867,1312528..1312644, 1312877..1313252,1313695..1313994)) /locus_tag="TCM_012148" /note="paralog of Thecc1EG012129t1" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY20800.1" /db_xref="Phytozome:POPTR_0008s02350.1" /db_xref="TAIR:AT3G18670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U4H2" /translation="MEVNNICSSAIVAQVLSGKDNYENWRACIKYYFLVRDLWDVVEQ APEPLKQGKGYGADFKAWRKRNLTALHAIQISCDPSMLSYIRNMTTAKDAWKTLAQRC AVAVARDADRTHILELLKGIKEHDLESTKSVLTSHTHLANAVIGDSSFTAFHFAIFKG QLDMIDEFLSTMSEEHLKKQDRYGRTVLHHAAKSENTKIAQSLIRKNRELLTFPDNGG DIPLNYAYFALDLLRHRPHLAFVERGDGINAVTVLSCQPSAFLAAVGIKQIYDLKVTH VYAHELLLLMSKTIAVFDAAQCYRSSVHQAMLNAAQWGMTEFIVEVIKPNLDLLMVLD EERRDIFQIAVAHRQEKVFGLIYGLDATKYLFLPYTDRNSNNMLHLVGQLSPSLRLSF NKSQVQLCKCKENYNGSRSASLSLL" mobile_element 1314618..1315076 /note="source:INTACT135F_F90_scaffold_2-int 13487 13975" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1319483..1325111) /locus_tag="TCM_012150" /note="dbxref CacaoGD:Thecc1EG012150" mRNA complement(join(1319483..1323084,1324565..1325111)) /locus_tag="TCM_012150" /product="Leucine-rich repeat transmembrane protein kinase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s09070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005973t1" /inference="similar to AA sequence:ricco:30147.m013919" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g624t1" CDS complement(1319903..1322812) /locus_tag="TCM_012150" /note="dbxref ricco:30147.m013919; paralog of Thecc1EG005973t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase" /protein_id="EOY20801.1" /db_xref="TAIR:AT4G20140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C6W6" /translation="MDCIRMSHFVLFFTVLSAVLAVTFGDSSTDSYWLHRIKSKLVDP AGVLESWSPTAHVCSWNGLRCSDDEAYVIGLNLSASRLSGSLPPEFWNLSSLQTLDLS LNFLTGSIPPEIGQLQNLRTLLLYSNSLSGKIPPEIGLLKKLQVLRIGDNMLAGQIPP NIGNLTELRVLGLAYCQLNGSIPAEIGNLKNLISLDLQENSLSGLIPTEIHGCDELQN FAASNNKLDGEIPASIGKLQSLQILNLANNSISGLIPTELSHLSNLQYLNLLGNRLNG EIPSELNHLVQLQKLDLSSNNLSGSINLFNIQLQNLEVLVLADNAFTGSIPSNFCLKN SNLQQLFLAQNKLSGGFPLELLNCSLLQQLDLSNNNFEGELPPSFDKLQNLTDLLLNN NSFSGSLPPGIGNMSNLENLYLFDNMITGSIPVEIGKLQRLSTIYLYDNQMSGSIPMQ LTNCTSLAAIDFFGNHFSGSIPETIGKLKNLVLLQLRQNDLSGPIPPSLGYCKRLQQL ALADNKLSGVLPPTFRFLSELSTVTLYNNSFEGPLPESLSYLKNLKIINFSHNKFSGT IFPLTGSNSLTALDLTNNSFSGSIPSTLAISKTLTRLRLATNLLTGNIPSELGQLTKL AFLDLSFNHLTGEVPSQLSSCQKLQHLLLNNNQFTGKMPNWLGSLQELGELHLSSNNF HGPVPAELGNCSRLLKLSLDTNNLSGEIPQEIGELTSLNVLNLQRNNLSGSIPPTIQQ CKKLYELRLSENFFTGSIPSELGRLTELQVILDLSRNLLCGEIPSSLGNLLKLERLNL SFNRLQGEVPSSLGKLTSLDMLNLSNNHLQGELPSTFSGFPLSSFSGNDKLCGPPLSS CMDSAGHEKNKLSNTAVICIIVAIVFTSTVICLVLIYIMLRIWCNWRKVSISNSEGAG IEQKREEEKWVYGDEKKRKGEYWRVNSMALVPSQKEHISSSCIFHVKMDTQNHGK" gene complement(1323045..1329658) /locus_tag="TCM_012151" /note="dbxref CacaoGD:Thecc1EG012151" mRNA complement(join(1323045..1323084,1325504..1326299, 1326539..1326873,1327537..1327902,1328217..1328283, 1329286..1329658)) /locus_tag="TCM_012151" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007705001" /inference="similar to AA sequence:Phytozome:POPTR_0012s09060.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g748t1" CDS complement(join(1326087..1326299,1326539..1326873, 1327537..1327902,1328217..1328283,1329286..1329369)) /locus_tag="TCM_012151" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20802.1" /db_xref="Phytozome:POPTR_0012s09060.2" /db_xref="TAIR:AT5G63040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3H4" /translation="MAFRCGSGSASASFTYVASSLSSPFHFGLSLLRRPYNDQRDRTE QLRNVKVLKLKGFQRRQNLPFAIFREQSQYIEIKSDDSEQLSDHPGPEDISVAGLSSI SFEGTEGKPGFISFYNRPYKRDDEVIPTVQSNESSLLWFIGPAVLVASFIFPSLYLRR ILSTIFEDSLLTDFLILFFTEALFYCGVAIFLLLIDHQRRPIGPDSAAETWAPHLGQR ISSVATLVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYLKSPSW PVIPIIFQVYRLHQLNRAAQLVTALSFTVRGAEMTTHNLAINNSLGTLLNVLQCLGVI CIWSLSSFLMRFYPSTTRIT" gene complement(1330097..1334004) /locus_tag="TCM_012152" /note="dbxref CacaoGD:Thecc1EG012152" mRNA complement(join(1330097..1330746,1331392..>1331849)) /locus_tag="TCM_012152" /product="Embryo defective 2759 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09120.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007704001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10153t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc416t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8034t1" mRNA complement(join(1330146..1330746,1331392..1331847, 1332624..1332757,1333116..1333188,1333878..1334004)) /locus_tag="TCM_012152" /product="Embryo defective 2759, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09120.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007704001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8034t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8034t1" CDS complement(join(1330332..1330746,1331392..1331847, 1332624..1332757,1333116..1333142)) /locus_tag="TCM_012152" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Embryo defective 2759, putative isoform 1" /protein_id="EOY20803.1" /db_xref="Phytozome:GSVIVT01007704001" /db_xref="TAIR:AT5G63050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSL6" /translation="MVLVTHQLQGSYVAFPSRPLPWSKGLALRRHVVTLHMLGSRERG ISLKHNVCLSTGAPRTRGLKAKNIRISAFKGSAQSNESGGRANDASVPKNSIKVAYVP KDGEETTIESSKAHNGQLAYASETSETIVGSPAIQKLFKKWIMILRSQSPSQVMDEAL GEGLPPRDTSETQVGTQSNRQSEFLKIVWSHFWSMDATIKIPFLIFVPWYLAVSLIYG AEVSKELTPLWVFGPLIVALYIKILRGLCALYVFCFKQTVQIIRNLPTYYLLAYNYIA RGKLKEDVRARFWQPVVDLKNLDYKELSRRKMKDFQEWAMEKYLDFVESIWPYYCRTI RFLKRANLI" CDS complement(join(1330332..1330746,1331392..>1331849)) /locus_tag="TCM_012152" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Embryo defective 2759 isoform 2" /protein_id="EOY20804.1" /db_xref="Phytozome:GSVIVT01007704001" /db_xref="TAIR:AT5G63050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSL6" /translation="STGAPRTRGLKAKNIRISAFKGSAQSNESGGRANDASVPKNSIK VAYVPKDGEETTIESSKAHNGQLAYASETSETIVGSPAIQKLFKKWIMILRSQSPSQV MDEALGEGLPPRDTSETQVGTQSNRQSEFLKIVWSHFWSMDATIKIPFLIFVPWYLAV SLIYGAEVSKELTPLWVFGPLIVALYIKILRGLCALYVFCFKQTVQIIRNLPTYYLLA YNYIARGKLKEDVRARFWQPVVDLKNLDYKELSRRKMKDFQEWAMEKYLDFVESIWPY YCRTIRFLKRANLI" mobile_element complement(1334704..1334787) /note="source:CACAO_M_E12463_F12_scaffold_3 4579 4667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1334710..1334803 /note="source:CACAO_M_S_E144962_F231_scaffold_10 1439 1531" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1334749..1345800) /locus_tag="TCM_012153" /note="dbxref CacaoGD:Thecc1EG012153" mRNA complement(join(1334749..1334999,1335089..1337691, 1337765..1338032,1338119..1339427,1339543..1339620, 1340136..1340238,1340735..1341104,1341251..1341483, 1342246..1342322,1344286..1344566)) /locus_tag="TCM_012153" /product="Modifier of snc1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g09510.3" /inference="similar to AA sequence:frave:gene32219" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc330t8; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc330t10" mRNA complement(join(1334814..1334999,1335088..1337691, 1337765..1338032,1338119..1339427,1339543..1339620, 1340136..1340238,1340735..1341104,1341251..1341295, 1341403..1341483,1342246..1342322,1344286..1344705, 1345452..1345800)) /locus_tag="TCM_012153" /product="Modifier of snc1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g09510.3" /inference="similar to AA sequence:frave:gene32219" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc330t10" CDS complement(join(1335166..1337691,1337765..1338032, 1338119..1339427,1339543..1339620,1340136..1340238, 1340735..1341104,1341251..1341483,1342246..1342302)) /locus_tag="TCM_012153" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene32219" /codon_start=1 /product="Modifier of snc1, putative isoform 2" /protein_id="EOY20806.1" /db_xref="TAIR:AT4G24680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSL4" /translation="MTLQQNLNHDIKYALWRTEMGFCKTKWHDCFGKSCCSKTNKLTQ PKVLISISHLLFFVKVEDIEVLVFFSLNPSAFLSVVSRLENHGLDPNVEIVPKGTLSW GSKSSSSSNAWGSSTLSPNADGGSSSPGHLSACPSSGGSGTRPSTAGSDRAHEPANAW GSNSRPSSASGALASNQTSLTSLRPRSAETRPGSSQLSRFAEPVPENSGAWGAAGTAE KLGMTSSKNDGFSLTSGDFPTLGSEKDTSGKNAELQEHGSQSRPGSSSGVAPLKERPG TSIVVDISVNANVKTGNTNSWRRDNPPYTEDGVRPSMEKWHADPQGSHPYPNTGIPPQ HYDAWRGPPINNHPGGVWYRGPPGGPPYGPPVAPGGFPMEPFPYYRPQIPGAALANPQ PVPPPGAGPMGPHPKNGDMYRGPMPDAFVRPGMPIRPPFYPGPVAYEGYYGPPMGYCN SNERDIPFMGIPAGPAAHNRYPSQNAPDPGGSHARPSVYGPPGKTLAAEHAESGHPHE TRGPYKVLLKQHDGWEGKDEEHRWEDNATAGLEKSDQRRTAAWENDGKANQKKEEVSI RTVVEEASFQITDHHGGDSILGKLKSSEGMENAKAYDDISVKEVAHPEVPAATKDASL IQKIEGLNAKARASDGRHESISGSNREEQKNKSQVVNAKAKHFANEVASGSCAVFPDK MPASGMTEPTCNEVAVSDGDKSLDLPAVGGAGINRRSTHSIHGRTDHRGRGRFNPQDA DGWRKKPLFTDSSNVKPTKDSENPSNVNIQDSMSLEASEKSGLYSQVRDEGESMPPVY DPSDSQAQRAMMRELAKQRVKQRQKEEEERARDQKAKALAKLEELNRRTQTAEGFTQK LESVPDSVVQSKQEDSQTLAEETILASRSEATSLASVSNPTVVALVSQSNTGGVEKPT VFSNQQPPVSTKNVHKTTADMHNQSLPLQQRVSNADAALHNLSQVSDSSTSKQKRVGY RKRDNSSLDKSSSEKSISTSTTELPKVHSDAAVDVGPSAEAVANEFTSGSETISTQNV VNEPPVHQRRKNNRSGKNKHKMEETSSVVLLPSGISKESNLTGTFVESLKPKSSECEL DPSLVQSLTDSKDGNRSSEQDSALLNEEVYGRVNNQWKSQHSRRMPRNPQAHRSAVHS SDAVVWAPVRSHNKAEAFEEVSHKLVVESVSPQVKNDAQVQNNPRNKRAEMERYIPKP VAKEMAQQVISQQPVAPSDNQTASDETVVRADTGSLGVECSQPMGSAMGKVGNSTELR NDGRQSRQGRGHGSWRQRASAEATLQGQDGQYSNSSKNTLKSTEHNQHQKLDSSPVKE QPKYDECNTSDGWNIPENPDSAAPPVVPVVRDQGLTGRGKRHAFKGNKGGGNNYDFDH KKINNGEAEKFNRQSSILEMGQSDLPATSKETRAVGERSTSHWQPKSSAINQRGSRPD SDQNVGAEIGWANKKDSTPQGRVSIPPQPDKETSEGMTQPLKDLYISEKGNVEEAHNG GYHDSKRERKVASLKGRPHSPNQGPGLPVEAPQSNVDARTEQRTTSGFRKNGNQNTRY GRGHESRGEWGSSGQEIKQHNPPANRDRQRHNSHYEYQPVGPQNNSRPSNPEGAKDGS HGAGARFRERGQSHSRRGGGNFHGRQSGSVRVDGGYE" CDS complement(join(1335166..1337691,1337765..1338032, 1338119..1339427,1339543..1339620,1340136..1340238, 1340735..1341104,1341251..1341295,1341403..1341483, 1342246..1342277)) /locus_tag="TCM_012153" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene32219" /codon_start=1 /product="Modifier of snc1, putative isoform 1" /protein_id="EOY20805.1" /db_xref="TAIR:AT4G24680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSL4" /translation="MTSSMLSGERRWASARRSGMTVLGKVAVPKPINLPSQRLENHGL DPNVEIVPKGTLSWGSKSSSSSNAWGSSTLSPNADGGSSSPGHLSACPSSGGSGTRPS TAGSDRAHEPANAWGSNSRPSSASGALASNQTSLTSLRPRSAETRPGSSQLSRFAEPV PENSGAWGAAGTAEKLGMTSSKNDGFSLTSGDFPTLGSEKDTSGKNAELQEHGSQSRP GSSSGVAPLKERPGTSIVVDISVNANVKTGNTNSWRRDNPPYTEDGVRPSMEKWHADP QGSHPYPNTGIPPQHYDAWRGPPINNHPGGVWYRGPPGGPPYGPPVAPGGFPMEPFPY YRPQIPGAALANPQPVPPPGAGPMGPHPKNGDMYRGPMPDAFVRPGMPIRPPFYPGPV AYEGYYGPPMGYCNSNERDIPFMGIPAGPAAHNRYPSQNAPDPGGSHARPSVYGPPGK TLAAEHAESGHPHETRGPYKVLLKQHDGWEGKDEEHRWEDNATAGLEKSDQRRTAAWE NDGKANQKKEEVSIRTVVEEASFQITDHHGGDSILGKLKSSEGMENAKAYDDISVKEV AHPEVPAATKDASLIQKIEGLNAKARASDGRHESISGSNREEQKNKSQVVNAKAKHFA NEVASGSCAVFPDKMPASGMTEPTCNEVAVSDGDKSLDLPAVGGAGINRRSTHSIHGR TDHRGRGRFNPQDADGWRKKPLFTDSSNVKPTKDSENPSNVNIQDSMSLEASEKSGLY SQVRDEGESMPPVYDPSDSQAQRAMMRELAKQRVKQRQKEEEERARDQKAKALAKLEE LNRRTQTAEGFTQKLESVPDSVVQSKQEDSQTLAEETILASRSEATSLASVSNPTVVA LVSQSNTGGVEKPTVFSNQQPPVSTKNVHKTTADMHNQSLPLQQRVSNADAALHNLSQ VSDSSTSKQKRVGYRKRDNSSLDKSSSEKSISTSTTELPKVHSDAAVDVGPSAEAVAN EFTSGSETISTQNVVNEPPVHQRRKNNRSGKNKHKMEETSSVVLLPSGISKESNLTGT FVESLKPKSSECELDPSLVQSLTDSKDGNRSSEQDSALLNEEVYGRVNNQWKSQHSRR MPRNPQAHRSAVHSSDAVVWAPVRSHNKAEAFEEVSHKLVVESVSPQVKNDAQVQNNP RNKRAEMERYIPKPVAKEMAQQVISQQPVAPSDNQTASDETVVRADTGSLGVECSQPM GSAMGKVGNSTELRNDGRQSRQGRGHGSWRQRASAEATLQGQDGQYSNSSKNTLKSTE HNQHQKLDSSPVKEQPKYDECNTSDGWNIPENPDSAAPPVVPVVRDQGLTGRGKRHAF KGNKGGGNNYDFDHKKINNGEAEKFNRQSSILEMGQSDLPATSKETRAVGERSTSHWQ PKSSAINQRGSRPDSDQNVGAEIGWANKKDSTPQGRVSIPPQPDKETSEGMTQPLKDL YISEKGNVEEAHNGGYHDSKRERKVASLKGRPHSPNQGPGLPVEAPQSNVDARTEQRT TSGFRKNGNQNTRYGRGHESRGEWGSSGQEIKQHNPPANRDRQRHNSHYEYQPVGPQN NSRPSNPEGAKDGSHGAGARFRERGQSHSRRGGGNFHGRQSGSVRVDGGYE" gene 1347068..1350779 /locus_tag="TCM_012154" /note="dbxref CacaoGD:Thecc1EG012154" mRNA join(1347068..1347323,1347592..1348840,1349832..1350779) /locus_tag="TCM_012154" /product="GDA1/CD39 nucleoside phosphatase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007701001" /inference="similar to AA sequence:Phytozome:GSVIVT01007701001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g507t2" CDS join(1347694..1348840,1349832..1350364) /locus_tag="TCM_012154" /codon_start=1 /product="GDA1/CD39 nucleoside phosphatase family protein, putative" /protein_id="EOY20807.1" /db_xref="Phytozome:GSVIVT01007701001" /db_xref="TAIR:AT4G19180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSL3" /translation="MEPKSPSKVKLSVMGFKRWKRVLKVFTFGFLILLSCIGVYLAFN FVKAWNVLESSYYTVVVDCGSTGTRVNVFEWEKGGLVNQGLPYLVHSYPDYSTKSPLW RNSCHYHCMQTEPGLDKFVGNASGMRASLEPLIAWAEQMVPHERHGDTPIIVLATAGL RRLAAKDARQVLDDVEIVVRGHSFVYSKNWIRVLTGKEEAYYGWVALNYKLGSLGNSL KASTFGLLDLGGSSLQVVVEVAEENGNENVMTSNIGSTDHNILAYSLPAFGLTEAFDR TVVMLSQNQTDRGNTTNRFEVRHPCLSSDFVQNYTCSGCPMPNVTDLENSESLMYKSQ FSLTYLVGDPNWEQCKELVRAAAMNYSGSDWSHQIVGRNCEANSSPYGGSNMLNLTAV AHHSGRFHALSGFFVVNDMLHLSPRASVTEIWEKGEQLCSRSSTELSSISQRQTYAGQ SCFRVPYVASLIEDSLCLGNGEIVFGPGDVSWTLGAALIHGLDSIETPASISTTKDMD IFSSPVFLFVLLLFLLFVVYCSQITLPMLGRKVADVGVSLPSYVHPRRRQT" gene complement(1350856..1351921) /locus_tag="TCM_046732" /note="dbxref CacaoGD:Thecc1EG046732" mRNA complement(join(1350856..1351506,1351586..1351921)) /locus_tag="TCM_046732" /product="SOUL heme-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s09030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010462t1" /inference="similar to AA sequence:frave:gene23516" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1529t7" CDS complement(join(1351065..1351506,1351586..1351788)) /locus_tag="TCM_046732" /note="dbxref frave:gene23516; paralog of Thecc1EG010462t1" /codon_start=1 /product="SOUL heme-binding family protein" /protein_id="EOY20808.1" /db_xref="TAIR:AT1G17100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEV0" /translation="MARAPRLIIAVVTLLWLLVLCRSTESPPYEVLHVESDFEIRHYR NATWMSATVNDLSFQKATLFGFHRLFQFIEGANLNWSRVAMTSPVVTSLVPGAGPLHS SAYAVRFYLPAKFQDCPPTPLPELNLEPYAWESHYVAVRKFSGFATDDSVLKEAARLA TSLSLSPWANSTIDSEYSYSIAQYDPPFRFIGRVNELWVDVDASVFVGPGKATA" gene complement(1352393..1356353) /locus_tag="TCM_046734" /note="dbxref CacaoGD:Thecc1EG046734" mRNA complement(join(1352393..1352594,1352686..1352870, 1353110..1353251,1354086..1354238,1354818..1354964, 1355312..1355464,1355910..1356353)) /locus_tag="TCM_046734" /product="Sec14p-like phosphatidylinositol transfer family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007695001" /inference="similar to AA sequence:Phytozome:GSVIVT01007695001" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g511t2" mRNA complement(join(1352393..1352594,1352686..1352870, 1353110..1353251,1353388..1353510,1354086..1354238, 1354818..1354964,1355312..1355464,1355910..1356353)) /locus_tag="TCM_046734" /product="Sec14p-like phosphatidylinositol transfer family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007695001" /inference="similar to AA sequence:Phytozome:GSVIVT01007695001" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g511t2" mRNA complement(join(1352912..1353251,1353388..1353510, 1354086..1354238,1354818..1354964,1355312..1355464, 1355910..1356177)) /locus_tag="TCM_046734" /product="Sec14p-like phosphatidylinositol transfer family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007695001" /inference="similar to AA sequence:Phytozome:GSVIVT01007695001" /note="transcript variant 3; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05819t00001; alternateUTRof:Thecc1EG046734t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g511t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1422t9" CDS complement(join(1353174..1353251,1354086..1354238, 1354818..1354964,1355312..1355464,1355910..1356047)) /locus_tag="TCM_046734" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Sec14p-like phosphatidylinositol transfer family protein isoform 2" /protein_id="EOY20810.1" /db_xref="Phytozome:GSVIVT01007695001" /db_xref="TAIR:AT5G63060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEV1" /translation="MAIHTCEALRACSPPLFTSIKLAPNCIRNCKFSVRNCLKNPNNS RKLVLKVKEKLEKEHYSLPVGKNGRDDEDMILWYLKDRRFSVEEAVAKLTKAIRWRQE FGVSDLSEDAVKSMAETGKAYVHDFLDVNDRPVLIVVASKHFPAVHDQHEDEKLCVFL IEKALSKLPAGKEQILGIFDLRGFGTKNADLSFLTFLVKFCSMETVRKEYFTEATIPV NFRD" CDS complement(join(1353174..1353251,1353388..1353510, 1354086..1354238,1354818..1354964,1355312..1355464, 1355910..1356047)) /locus_tag="TCM_046734" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Sec14p-like phosphatidylinositol transfer family protein isoform 1" /protein_id="EOY20809.1" /db_xref="Phytozome:GSVIVT01007695001" /db_xref="TAIR:AT5G63060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEV1" /translation="MAIHTCEALRACSPPLFTSIKLAPNCIRNCKFSVRNCLKNPNNS RKLVLKVKEKLEKEHYSLPVGKNGRDDEDMILWYLKDRRFSVEEAVAKLTKAIRWRQE FGVSDLSEDAVKSMAETGKAYVHDFLDVNDRPVLIVVASKHFPAVHDQHEDEKLCVFL IEKALSKLPAGKEQILGIFDLRGFGTKNADLSFLTFLFNVFYYYYPKRLGEVLFVEAP FVFKPIWQLVKPLLKSYASMVKFCSMETVRKEYFTEATIPVNFRD" CDS complement(join(1353174..1353251,1353388..1353510, 1354086..1354238,1354818..1354964,1355312..1355464, 1355910..1356047)) /locus_tag="TCM_046734" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Sec14p-like phosphatidylinositol transfer family protein isoform 1" /protein_id="EOY20811.1" /db_xref="Phytozome:GSVIVT01007695001" /db_xref="TAIR:AT5G63060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEV1" /translation="MAIHTCEALRACSPPLFTSIKLAPNCIRNCKFSVRNCLKNPNNS RKLVLKVKEKLEKEHYSLPVGKNGRDDEDMILWYLKDRRFSVEEAVAKLTKAIRWRQE FGVSDLSEDAVKSMAETGKAYVHDFLDVNDRPVLIVVASKHFPAVHDQHEDEKLCVFL IEKALSKLPAGKEQILGIFDLRGFGTKNADLSFLTFLFNVFYYYYPKRLGEVLFVEAP FVFKPIWQLVKPLLKSYASMVKFCSMETVRKEYFTEATIPVNFRD" mobile_element complement(1356707..1356893) /note="source:scaffold_3_CACTA_0377 4981 5176" /mobile_element_type="transposon:TIR/CACTA" gene 1356993..1358051 /locus_tag="TCM_012157" /note="dbxref CacaoGD:Thecc1EG012157" mRNA 1356993..1358051 /locus_tag="TCM_012157" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.34 coverage" CDS 1357073..1357273 /locus_tag="TCM_012157" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20812.1" /translation="MHETMVKEAGHCVPTGGIGDKHFLTTQTPIGDRQSILFQPDRSN PLFFPKEIKFLGQEKNKMEKCR" gene complement(1358507..1361453) /locus_tag="TCM_012158" /note="dbxref CacaoGD:Thecc1EG012158" mRNA complement(join(1358507..1359286,1359384..1359572, 1359682..1359909,1360247..1361235,1361344..1361453)) /locus_tag="TCM_012158" /product="UBX domain-containing protein 8-B, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09180.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09180.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b011738t1a2; inference alignment:Newbler:10:TSA:cgbaB_g02167t00002" mRNA complement(join(1358815..1359286,1359384..1359572, 1359682..1359915,1360247..1361235,1361344..1361453)) /locus_tag="TCM_012158" /product="UBX domain-containing protein 8-B, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09180.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09180.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02167t00002" CDS complement(join(1359059..1359286,1359384..1359572, 1359682..1359909,1360247..1360786)) /locus_tag="TCM_012158" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="UBX domain-containing protein 8-B, putative isoform 2" /protein_id="EOY20814.1" /db_xref="Phytozome:POPTR_0015s09180.1" /db_xref="TAIR:AT4G10790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEV2" /translation="MSLTIRGSVRARGTTPSCNGIFCRIVCLPRNIIGGFSRVLGRRN QYQPPNLQLQHSQPQQPLVVPEEWAFLASFEQQYGITHPFFYACSFMEALKIAEDEHK FMFMYLHSHEHPFTPSFCSGTLCSELVVQFLDANFVCWGAIANKGEGLQMAATLQPAS FPFCAVIAPAAGNSIAVLQQGPVDPAELVEILQRTMEEQGSAFSSTRGREEEQMRARI KEEERIRARAKEEEKLKADRQLREEQEAAYFAALNIDQEKERLRNARAQKPVEASNKA NYEKPRQMPTEKQLGKTRQASSIREAQYKETATQGKDTPQATQILIRFPSGERREHSF SCTDKILSIYRYIDSLGLPGLGNYRLISSFPRRVYGVDQMGMTLKDAGLHPRASLFLE LL" CDS complement(join(1359059..1359286,1359384..1359572, 1359682..1359915,1360247..1360786)) /locus_tag="TCM_012158" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="UBX domain-containing protein 8-B, putative isoform 1" /protein_id="EOY20813.1" /db_xref="Phytozome:POPTR_0015s09180.1" /db_xref="TAIR:AT4G10790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEV2" /translation="MSLTIRGSVRARGTTPSCNGIFCRIVCLPRNIIGGFSRVLGRRN QYQPPNLQLQHSQPQQPLVVPEEWAFLASFEQQYGITHPFFYACSFMEALKIAEDEHK FMFMYLHSHEHPFTPSFCSGTLCSELVVQFLDANFVCWGAIANKGEGLQMAATLQPAS FPFCAVIAPAAGNSIAVLQQMEGPVDPAELVEILQRTMEEQGSAFSSTRGREEEQMRA RIKEEERIRARAKEEEKLKADRQLREEQEAAYFAALNIDQEKERLRNARAQKPVEASN KANYEKPRQMPTEKQLGKTRQASSIREAQYKETATQGKDTPQATQILIRFPSGERREH SFSCTDKILSIYRYIDSLGLPGLGNYRLISSFPRRVYGVDQMGMTLKDAGLHPRASLF LELL" gene 1365728..1374148 /locus_tag="TCM_012159" /note="dbxref CacaoGD:Thecc1EG012159" mRNA join(1365728..1366665,1366798..1366884,1367010..1367216, 1367833..1367997,1368318..1368371,1368488..1368634, 1369275..1369860) /locus_tag="TCM_012159" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007693001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010459t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007693001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g814t2" mRNA join(1365763..1366665,1366798..1366884,1367010..1367216, 1367833..1367998,1369276..1369901,1373459..1373562, 1374119..1374148) /locus_tag="TCM_012159" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007693001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001624t3" /inference="similar to AA sequence:Phytozome:GSVIVT01007693001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc931t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g814t2" mRNA join(1365986..1366665,1366798..1366884,1367010..1367216, 1367833..1367997,1368318..1368371,1368488..1368634, 1369275..1369903) /locus_tag="TCM_012159" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007693001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010459t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007693001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g814t2; alternateUTRof:Thecc1EG012159t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g814t2" CDS join(1366294..1366665,1366798..1366884,1367010..1367216, 1367833..1367998,1369276..1369652) /locus_tag="TCM_012159" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG001624t3" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY20817.1" /db_xref="Phytozome:GSVIVT01007693001" /db_xref="TAIR:AT1G70550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I5H4" /translation="MKGDSFPGTKIWNKPCCVANTTRQLQCIQTQPFLSKQTTTTAQK HSTNMASSVSHNTFSMIPIFVAFLVVASSLGPVLSSPLVSDSGHRKLANHTLRPAKEI QKLRRINAYLKKISKPAVKTIQSPDGDVIDCVLSHLQPAFDHPELRGQKPLDPPERPK GHNSTEAVSESFQLWTDSGESCPQGTVPIRRTTEKDILRASSVRRYGRRRRVRRDSTG NGHEHAVLFVNGDQYYGAKASLNVWAPRVTNEYEFSLSQIWVISGSFGNDLNTIEAGW QDPKHGHWWLEFGSGLLVGYWPAFLFSHLRNHANMIQFGGEIVNTRSSGFHTSTQMGS GHFAEEGFGKAAYFRNMQTVDWDNNLLPLTNLRLLADHSNCYDIRQGRNNVWGTYFYY GGPGRNVRCP" CDS join(1366294..1366665,1366798..1366884,1367010..1367216, 1367833..1367997,1368318..1368371,1368488..1368634, 1369275..1369652) /locus_tag="TCM_012159" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010459t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20815.1" /db_xref="Phytozome:GSVIVT01007693001" /db_xref="TAIR:AT5G50150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I5H4" /translation="MKGDSFPGTKIWNKPCCVANTTRQLQCIQTQPFLSKQTTTTAQK HSTNMASSVSHNTFSMIPIFVAFLVVASSLGPVLSSPLVSDSGHRKLANHTLRPAKEI QKLRRINAYLKKISKPAVKTIQSPDGDVIDCVLSHLQPAFDHPELRGQKPLDPPERPK GHNSTEAVSESFQLWTDSGESCPQGTVPIRRTTEKDILRASSVRRYGRRRRVRRDSTG NGHEHAVLFVNGDQYYGAKASLNVWAPRVTNEYEFSLSQIWVISGSFGNDLNTIEAGW QVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISPRSSYNGR QFDIGIMVWKDPKHGHWWLEFGSGLLVGYWPAFLFSHLRNHANMIQFGGEIVNTRSSG FHTSTQMGSGHFAEEGFGKAAYFRNMQTVDWDNNLLPLTNLRLLADHSNCYDIRQGRN NVWGTYFYYGGPGRNVRCP" CDS join(1366294..1366665,1366798..1366884,1367010..1367216, 1367833..1367997,1368318..1368371,1368488..1368634, 1369275..1369652) /locus_tag="TCM_012159" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010459t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20816.1" /db_xref="Phytozome:GSVIVT01007693001" /db_xref="TAIR:AT5G50150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I5H4" /translation="MKGDSFPGTKIWNKPCCVANTTRQLQCIQTQPFLSKQTTTTAQK HSTNMASSVSHNTFSMIPIFVAFLVVASSLGPVLSSPLVSDSGHRKLANHTLRPAKEI QKLRRINAYLKKISKPAVKTIQSPDGDVIDCVLSHLQPAFDHPELRGQKPLDPPERPK GHNSTEAVSESFQLWTDSGESCPQGTVPIRRTTEKDILRASSVRRYGRRRRVRRDSTG NGHEHAVLFVNGDQYYGAKASLNVWAPRVTNEYEFSLSQIWVISGSFGNDLNTIEAGW QVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISPRSSYNGR QFDIGIMVWKDPKHGHWWLEFGSGLLVGYWPAFLFSHLRNHANMIQFGGEIVNTRSSG FHTSTQMGSGHFAEEGFGKAAYFRNMQTVDWDNNLLPLTNLRLLADHSNCYDIRQGRN NVWGTYFYYGGPGRNVRCP" gene complement(1369862..1376103) /locus_tag="TCM_012160" /note="dbxref CacaoGD:Thecc1EG012160" mRNA complement(join(1369862..1369902,1373460..1373562, 1374119..1374199,1375128..1375245,1375395..1375459, 1375912..1376103)) /locus_tag="TCM_012160" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc945t4_C2" gene complement(1370932..1372301) /locus_tag="TCM_012161" /note="dbxref CacaoGD:Thecc1EG012161" mRNA complement(join(1370932..1371601,1372028..1372301)) /locus_tag="TCM_012161" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1595t1_C1" CDS complement(1371311..1371490) /locus_tag="TCM_012161" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20819.1" /translation="MERKNFGKYGIRLVGVIFNLAMISLCWHWYVDGRRFRQANNIFS IVSSTAPRIQEKVVI" CDS complement(join(1373547..1373562,1374119..1374199, 1375128..1375245,1375395..1375407)) /locus_tag="TCM_012160" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20818.1" /translation="MGAKGSRTPLHADVFRSCIWSANVFGKKKWLFLAHLQCHLLFDR LPGWNAYSNRIKLSLCLADGIIKSIICGIYC" gene complement(1376335..1378787) /locus_tag="TCM_012162" /note="dbxref CacaoGD:Thecc1EG012162" mRNA complement(join(1376335..1376989,1377129..1377241, 1378142..1378323,1378413..1378787)) /locus_tag="TCM_012162" /product="Calcium-dependent lipid-binding family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021446t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017643001" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.58 coverage" CDS complement(join(1376882..1376989,1377129..1377241, 1378142..1378323,1378413..1378477)) /locus_tag="TCM_012162" /note="paralog of Thecc1EG021446t1" /codon_start=1 /product="Calcium-dependent lipid-binding family protein, putative" /protein_id="EOY20820.1" /db_xref="Phytozome:GSVIVT01017643001" /db_xref="TAIR:AT1G48090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HIJ3" /translation="MYQQCTYQIRGLCRVVIMCLFCNPGHPISSGVTLAKLAAVTMDE QGNETFDTSGALDKLRKVSSVFFLPYSLCCCPLEVVEKVHVQSLQLELLAMYHDLDSL PWNMDKKWEDPSPKEQIEIFEDRINEPAAYCEVVSKWAMNRNYLVSPIMEYLI" gene 1378956..1381884 /locus_tag="TCM_012163" /note="dbxref CacaoGD:Thecc1EG012163" mRNA 1378956..1381884 /locus_tag="TCM_012163" /product="Carbohydrate binding protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g09250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021886t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09490.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g870t1" CDS 1378979..1380997 /locus_tag="TCM_012163" /note="paralog of Thecc1EG021886t1" /codon_start=1 /product="Carbohydrate binding protein, putative" /protein_id="EOY20821.1" /db_xref="Phytozome:POPTR_0015s09490.1" /db_xref="TAIR:AT1G15530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAV4" /translation="MSHSPPPPSQPLRLGRPWRHLPMPSLLVPFLLLLMFLCPTFALD FLFNSFTTATNLTLINDARIDTSTIRLTNDSNQFSFGRAFHPTTLSMKSTSNSSSLSS FSTAFVFSVLPELSNSPGFGLCFVLSNSTSPPGALASQYFGIFTNATDSPVAPLLAIE FDTGLNPEFNDPDENHIGIDLNNVISAQTAPAEYFNSSTGSFVPVNMRTGQNVHAWID FDGVNFEINVTVAPVGVPKPSRPTLNYKGPVIANYVSSEMFVGFSASKTQWVEAQRIL AWSFSDTGVLREINTTGLPIFFIESSSSSLSSGAIAGIVIGCVAFVIICGSGCYLIWR KKFREESEDEIEDWELEYWPHRFSYEELKQATDGFSNENLLGSGGFGRVFKATLPNNT EVAVKCVNHDSKQGLREFMAEIESMGRLQHKNLVQMRGWCRKGNELMLIYDYMPNGSL NRWIFDKPQKLLGWRQRLLVLADVAEGLNYLHHGWDQVVVHRDIKSSNILLDSEMRGR LGDFGLAKLYEHGQVPKTTRVVGTLGYLAPELATVAVPTAASDVYSFGVVVLEVVGGR RPLEMATEKEEEQVLIDWVRYLYAEGRLREAADARIREEYEGEEVEMVLKLGLACCHP DTSRRPTMKEVAAVLLGEEVAAAPAELLNDLTRGGSTAADDGHGGGAA" gene complement(1381889..1385247) /locus_tag="TCM_012164" /note="dbxref CacaoGD:Thecc1EG012164" mRNA complement(join(1381889..1382468,1382553..1383271, 1383390..1383648,1383729..1384056,1384184..1384421, 1384508..1384693,1384778..1384871,1385047..1385247)) /locus_tag="TCM_012164" /product="Ferric reduction oxidase 8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09480.1" /inference="similar to AA sequence:ricco:30147.m013879" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3337t2" mRNA complement(join(1381889..1382468,1382553..1383271, 1383390..1383648,1383729..1384056,1384184..1384693, 1384778..1384871,1385047..1385247)) /locus_tag="TCM_012164" /product="Ferric reduction oxidase 8 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09480.1" /inference="similar to AA sequence:ricco:30147.m013879" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b011743t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3337t2" mRNA complement(join(1382014..1382468,1382553..1383274, 1383390..1383648,1383729..1384056,1384184..1384421, 1384508..1384530)) /locus_tag="TCM_012164" /product="Ferric reduction oxidase 8 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09480.1" /inference="similar to AA sequence:ricco:30147.m013879" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g523t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3337t2" CDS complement(join(1382287..1382468,1382553..1383271, 1383390..1383648,1383729..1384056,1384184..1384421, 1384508..1384693,1384778..1384871,1385047..1385203)) /locus_tag="TCM_012164" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013879" /codon_start=1 /product="Ferric reduction oxidase 8 isoform 1" /protein_id="EOY20822.1" /db_xref="TAIR:AT5G50160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VY13" /translation="MGKASILTVLKVLMVLISTGWISLWLLKPTNFWTRKWKGAEASA QDTVFGYYGLDFAVYTFPVIALAMIGLVYLNLQPWEHRSRQVRSSAAAFSNPLVISKL IGILSSVEILAVFLFTLFLAWTFYKRISQDFKKLTPVESLKLDLWQLKYLRVATRFGL LAEACLTLLLLPILRGLAVFRILGIRFEASVRYHIWLGTAMICFATFHGASTLFIWGI SHNILDEITKWQRTGRIYLAGEITLVTGLIMWITSLPQIRRKRFEIFYYIHHLYIIFI VFFLLHAGDRHFYMIFPGIFLFGIDKLLRIIQSRPETYILSARLYPCKAVELILPKDS GLRYTPTSVIFLKIPSISNFQWHSFSITSSSTIDNHRMSVIVKCDGRWTSSLYDMIQA GLDTNADQMKCIPVAIEGPYGPSSMIFLRYDSLLLVAGGIGITPFLSILHEIAAAQSS CRGRIPSRMHLIYVVKKSQDIGLLNSVSSLLQNQPSQKWHLKLEVFVTQEKQSGATVG EILSETSQVQTVHLGTKGPIYAIHGPESLLRITALAGIASIVFFVFVICFNNIFVPSE KKSVHSLKVALSSKNKAPKEKSPSWVADILIISSFIISLACTTLVAIILRWRKVKKEI PLVSQREEKVKELGSTETKGAVEEHEVHFGGRPNLEDVFSKFLNETDGSNIGVLVCGP ESLKRAVASLCQQKSQWFNIRDQKKKPYLSFHALNFTL" CDS complement(join(1382287..1382468,1382553..1383271, 1383390..1383648,1383729..1384056,1384184..1384480)) /locus_tag="TCM_012164" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013879" /codon_start=1 /product="Ferric reduction oxidase 8 isoform 2" /protein_id="EOY20823.1" /db_xref="TAIR:AT5G50160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VY13" /translation="MTDAEKSRISPLLTCYLCFRWQLKYLRVATRFGLLAEACLTLLL LPILRGLAVFRILGIRFEASVRYHIWLGTAMICFATFHGASTLFIWGISHNILDEITK WQRTGRIYLAGEITLVTGLIMWITSLPQIRRKRFEIFYYIHHLYIIFIVFFLLHAGDR HFYMIFPGIFLFGIDKLLRIIQSRPETYILSARLYPCKAVELILPKDSGLRYTPTSVI FLKIPSISNFQWHSFSITSSSTIDNHRMSVIVKCDGRWTSSLYDMIQAGLDTNADQMK CIPVAIEGPYGPSSMIFLRYDSLLLVAGGIGITPFLSILHEIAAAQSSCRGRIPSRMH LIYVVKKSQDIGLLNSVSSLLQNQPSQKWHLKLEVFVTQEKQSGATVGEILSETSQVQ TVHLGTKGPIYAIHGPESLLRITALAGIASIVFFVFVICFNNIFVPSEKKSVHSLKVA LSSKNKAPKEKSPSWVADILIISSFIISLACTTLVAIILRWRKVKKEIPLVSQREEKV KELGSTETKGAVEEHEVHFGGRPNLEDVFSKFLNETDGSNIGVLVCGPESLKRAVASL CQQKSQWFNIRDQKKKPYLSFHALNFTL" CDS complement(join(1382287..1382468,1382553..1383274, 1383390..1383648,1383729..1384056,1384184..1384258)) /locus_tag="TCM_012164" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m013879" /codon_start=1 /product="Ferric reduction oxidase 8 isoform 3" /protein_id="EOY20824.1" /db_xref="TAIR:AT5G50160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VY13" /translation="MICFATFHGASTLFIWGISHNILDEITKWQRTGRIYLAGEITLV TGLIMWITSLPQIRRKRFEIFYYIHHLYIIFIVFFLLHAGDRHFYMIFPGIFLFGIDK LLRIIQSRPETYILSARLYPCKAVELILPKDSGLRYTPTSVIFLKIPSISNFQWHSFS ITSSSTIDNHRMSVIVKCDGRWTSSLYDMIQAGLDTNADQMKCIPVAIEGPYGPSSMI FLSRYDSLLLVAGGIGITPFLSILHEIAAAQSSCRGRIPSRMHLIYVVKKSQDIGLLN SVSSLLQNQPSQKWHLKLEVFVTQEKQSGATVGEILSETSQVQTVHLGTKGPIYAIHG PESLLRITALAGIASIVFFVFVICFNNIFVPSEKKSVHSLKVALSSKNKAPKEKSPSW VADILIISSFIISLACTTLVAIILRWRKVKKEIPLVSQREEKVKELGSTETKGAVEEH EVHFGGRPNLEDVFSKFLNETDGSNIGVLVCGPESLKRAVASLCQQKSQWFNIRDQKK KPYLSFHALNFTL" gene 1385337..1390650 /locus_tag="TCM_012165" /note="dbxref CacaoGD:Thecc1EG012165" mRNA join(1385337..1385427,1389359..1389639,1389795..1389913, 1389998..1390116,1390191..1390650) /locus_tag="TCM_012165" /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007663001" /inference="similar to AA sequence:Phytozome:GSVIVT01007663001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14455t00001" mobile_element 1387359..1387485 /note="source:scaffold_1_CACTA_0016 9077 9198" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1387950..1388115 /note="source:INTACT20_F8_scaffold_7-int 8659 8821" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(1389381..1389639,1389795..1389913,1389998..1390116, 1390191..1390407) /locus_tag="TCM_012165" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative" /protein_id="EOY20825.1" /db_xref="Phytozome:GSVIVT01007663001" /db_xref="TAIR:AT5G47740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHK4" /translation="MEEENYVPVDSMQYYTARMMSPEIVEIGEESKSFAGSKDGSCSD VYVAVGRDDLDVLKWALDHAVSPGARVFLVHVFAPITFVRTPVGKLSKNQLNEEQLRV YVNEENNRRKNLLAKYIRLCIDSKVTVDTMLIESNSLSKAILELIPVLNITCLVIGSK HPPSSRQRRRKQRIGELIKNNAPDYCEVTVVHDGKKVQDCQQEPEQVHSSQESSPQRP GLIPERNFFQCVCFTGKFN" mobile_element complement(1391319..1391691) /note="source:CACAO_on_E576_scaffold_5 1 401" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(1391709..1393036) /locus_tag="TCM_012167" /note="dbxref CacaoGD:Thecc1EG012167" mRNA complement(join(1391709..1392042,1392517..1393036)) /locus_tag="TCM_012167" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" gene 1392676..1397853 /locus_tag="TCM_012168" /note="dbxref CacaoGD:Thecc1EG012168" mRNA join(1392676..1393180,1393289..1393872,1393953..1394132, 1394228..1394389,1394476..1394630,1395183..1395275, 1395374..1395459,1395536..1396432,1396796..1397029, 1397133..1397853) /locus_tag="TCM_012168" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g09270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029008t1" /inference="similar to AA sequence:ricco:30131.m006913" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b011747t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g697t2" mRNA join(1392676..1393180,1393289..1393872,1393953..1394132, 1394228..1394389,1394476..1394630,1395183..1395275, 1395374..1395459,1395536..1395762,1396796..1397029, 1397133..1397853) /locus_tag="TCM_012168" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g09270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029008t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s08650.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g697t2" CDS complement(1392781..1393002) /locus_tag="TCM_012167" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20826.1" /translation="MGMKENLRQSKANYPNYPCRDLGREKCQNLYIEFGIRRDSPNSQ AQCLLWVSDSGFGHILFLHGLWTEMPRTD" CDS join(1393125..1393180,1393289..1393872,1393953..1394132, 1394228..1394389,1394476..1394630,1395183..1395275, 1395374..1395459,1395536..1395762,1396796..1397029, 1397133..1397236) /locus_tag="TCM_012168" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029008t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY20827.1" /db_xref="Phytozome:POPTR_0012s08650.1" /db_xref="TAIR:AT5G63120.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C718" /translation="MNPYDRRYGDPESYRQRRSDFMGQPPPVGLPAMGPEMVPPAGAT SYPRGGNVPYGGPPTAQPPTFQGRVSGAVPGTGNFDTYPSFQPVAGRLEMGRGGGMGN GHVGDRRSDGARGRGGGFRGGGGGRDGRGGGGRGYGGRHGGSSRGDLDNVSLPRQNFG NLVPFEKNFYVESPAVRGMTEQEAMVYRKTRDITIQGHDVPKPTRMFHEANFPDYCLE VIARLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAHG EGPIVLILAPTRELAVQIQEEAAKFATHANIRSTCIYGGAPKGPQIRDLKRGVEIVIA TPGRLIDMLEAQHTSLQRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSAT WPREVESLARQFLRNPYKVIIGSPDLKANQSINQVVEVVTELEKYNRLIKLLKEVMDG NRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFKSGRSPIMTATD VAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTQANAKYARDLI KLLQDAGQVVSPALSTLARSAASSFGGSRGNFRSRGRGGYGNRSSISGSNTIPLGARR PW" CDS join(1393125..1393180,1393289..1393872,1393953..1394132, 1394228..1394389,1394476..1394630,1395183..1395275, 1395374..1395459,1395536..1395791) /locus_tag="TCM_012168" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m006913; paralog of Thecc1EG029008t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY20828.1" /db_xref="TAIR:AT5G63120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C718" /translation="MNPYDRRYGDPESYRQRRSDFMGQPPPVGLPAMGPEMVPPAGAT SYPRGGNVPYGGPPTAQPPTFQGRVSGAVPGTGNFDTYPSFQPVAGRLEMGRGGGMGN GHVGDRRSDGARGRGGGFRGGGGGRDGRGGGGRGYGGRHGGSSRGDLDNVSLPRQNFG NLVPFEKNFYVESPAVRGMTEQEAMVYRKTRDITIQGHDVPKPTRMFHEANFPDYCLE VIARLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAHG EGPIVLILAPTRELAVQIQEEAAKFATHANIRSTCIYGGAPKGPQIRDLKRGVEIVIA TPGRLIDMLEAQHTSLQRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSAT WPREVESLARQFLRNPYKVIIGSPDLKANQSINQVVEVVTELEKYNRLIKLLKEVMDG NRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFKSGRSPIMTATD VAARGLGRITVCSES" gene 1398205..1398881 /locus_tag="TCM_012169" /note="dbxref CacaoGD:Thecc1EG012169" mRNA 1398205..1398881 /locus_tag="TCM_012169" /product="Ribosomal protein L18e/L15 superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010510t1" /inference="similar to AA sequence:ricco:27504.m000641" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8229t1" CDS 1398262..1398708 /locus_tag="TCM_012169" /note="dbxref ricco:27504.m000641; paralog of Thecc1EG010510t1" /codon_start=1 /product="Ribosomal protein L18e/L15 superfamily protein" /protein_id="EOY20829.1" /db_xref="TAIR:AT1G70600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LR33" /translation="MTTRFKKHRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIL FDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSMVPQDVKDKAKCSKDSAPLIDV TQFGYFKVLGKGVLPENQPIVVKAKLVSKTAEKKIKEAGGAVVLTA" mobile_element 1406020..1406314 /note="source:CACAO_M_E12136_F2_scaffold_3 1 264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1406643..1407446 /note="source:CACAO_M_E12136_F2_scaffold_3 1 804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1409410..1409531) /note="source:scaffold_1_CACTA_0001 8389 8521" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1409446..1409689) /note="source:CACAO_MITE150_scaffold_9 115 401" /mobile_element_type="transposon:TIR/MITE" mobile_element 1409868..1410275 /note="source:CACAO_MITE_S3_scaffold_1 1 420" /mobile_element_type="transposon:TIR/MITE" gene 1411056..1417848 /locus_tag="TCM_012170" /note="dbxref CacaoGD:Thecc1EG012170" mRNA join(1411056..1411808,1412462..1412571,1412710..1413015, 1413165..1413277,1413384..1413714,1413803..1414018, 1414127..1414363,1414669..1414854,1414944..1415084, 1416066..1416334,1416651..1416732,1416825..1417848) /locus_tag="TCM_012170" /product="Copper amine oxidase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004079001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010489t1" /inference="similar to AA sequence:ricco:30147.m013883" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc932t4" mRNA join(1411203..1411808,1412462..1412571,1412710..1413015, 1413165..1413277,1413384..1413714,1413803..1414018, 1414127..1414363,1414669..1414854,1414944..1415084, 1416066..1416326,1416651..1416732,1416825..1416853) /locus_tag="TCM_012170" /product="Copper amine oxidase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004079001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010489t3" /inference="similar to AA sequence:Phytozome:GSVIVT01004079001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc935t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc922t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc932t4" CDS join(1411541..1411808,1412462..1412571,1412710..1413015, 1413165..1413277,1413384..1413714,1413803..1414018, 1414127..1414363,1414669..1414854,1414944..1415084, 1416066..1416334,1416651..1416732,1416825..1416959) /locus_tag="TCM_012170" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013883; paralog of Thecc1EG010489t1" /codon_start=1 /product="Copper amine oxidase family protein isoform 1" /protein_id="EOY20830.1" /db_xref="TAIR:AT2G42490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L866" /translation="MASAKKKATLFSSASSSPSSSSSPSSCCAVDSAVSAAPAAAAAA NVVQEWTVASRDRRDDQRATKAAMASLIHPVDSLPDTSTAAPSTKGIQILPRAQTSHP LDPLSAAEISVAVATVRAAGATPEVRDGMRFVEVVLLEPDKHVVALADAYFFPPFQPS LLPRTKGGPVIPTKLPPRRARLIVYNKKSNETSVWIVELSEVHAVTRGGHHRGKVISS KVVPDVQPPMDAMEYAECEAVVKDFPPFREAMKKRGIEDMELVMVDPWCVGYHSDADA PSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQKMKVIEFEDCKFVPLPLADP LRNYTPGETRGGVDRSDVKPLQIVQPEGPSFRVNGCFVEWQKWNFRIGFTPKEGLVIY SVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGC DCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTV SFICTVANYEYGFYWHFYQDGKIEAEVKLTGILSLGALQPGEFRKYGTMIAPGLYAPV HQHFFVARMDMAVDCKPGEAFNQVVEVNAKVEEPGENNVHNNAFYAEETLLKTELQAM RDCNPFTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNLW VTRYAPDEMFPGGEFPNQNPRAGEGLATWVKQDRPLEETDIVLWYVFGITHVPRLEDW PVMPVEHIGFMLMPHGFFNCSPAVDVPPNACELDTKDNEIKENVVPKSTQNGLLAKL" CDS join(1411541..1411808,1412462..1412571,1412710..1413015, 1413165..1413277,1413384..1413714,1413803..1414018, 1414127..1414363,1414669..1414854,1414944..1415084, 1416066..1416326,1416651..1416732,1416825..1416841) /locus_tag="TCM_012170" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010489t3" /codon_start=1 /product="Copper amine oxidase family protein isoform 2" /protein_id="EOY20831.1" /db_xref="Phytozome:GSVIVT01004079001" /db_xref="TAIR:AT2G42490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L866" /translation="MASAKKKATLFSSASSSPSSSSSPSSCCAVDSAVSAAPAAAAAA NVVQEWTVASRDRRDDQRATKAAMASLIHPVDSLPDTSTAAPSTKGIQILPRAQTSHP LDPLSAAEISVAVATVRAAGATPEVRDGMRFVEVVLLEPDKHVVALADAYFFPPFQPS LLPRTKGGPVIPTKLPPRRARLIVYNKKSNETSVWIVELSEVHAVTRGGHHRGKVISS KVVPDVQPPMDAMEYAECEAVVKDFPPFREAMKKRGIEDMELVMVDPWCVGYHSDADA PSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQKMKVIEFEDCKFVPLPLADP LRNYTPGETRGGVDRSDVKPLQIVQPEGPSFRVNGCFVEWQKWNFRIGFTPKEGLVIY SVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGC DCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTV SFICTVANYEYGFYWHFYQDGKIEAEVKLTGILSLGALQPGEFRKYGTMIAPGLYAPV HQHFFVARMDMAVDCKPGEAFNQVVEVNAKVEEPGENNVHNNAFYAEETLLKTELQAM RDCNPFTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNLW VTRYAPDEMFPGGEFPNQNPRAGEGLATWVKQDRPLEETDIVCFWNYPCPSIGRLACY ASGAHWFHANAAWIL" mobile_element complement(1417746..1417901) /note="source:scaffold_4_CACTA_0483 973 1153" /mobile_element_type="transposon:TIR/CACTA" gene 1417896..1421159 /locus_tag="TCM_012171" /note="dbxref CacaoGD:Thecc1EG012171" mRNA join(1417896..1418713,1418803..1419335,1419443..1420078, 1420189..1421159) /locus_tag="TCM_012171" /product="BED zinc finger,hAT family dimerization domain" /inference="alignment:exonerate-protein:2:frave:gene25500" /inference="similar to AA sequence:Phytozome:POPTR_0011s10500.1" /note="quality class is strong-expresste, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc743t1" CDS join(1418304..1418713,1418803..1419335,1419443..1420078, 1420189..1420232) /locus_tag="TCM_012171" /codon_start=1 /product="BED zinc finger,hAT family dimerization domain" /protein_id="EOY20832.1" /db_xref="Phytozome:POPTR_0011s10500.1" /db_xref="TAIR:AT3G42170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C6E9" /translation="MMSEDTGESTESQEQFFWGAKVRVVHFTFDQEASRKELARAIIM HEYPLSIVDDVGFRKYSASLQPLFEVGSRKTLEGDILKIYDFEKAKLRNVIEGLNTRF AITTEMWTSKEKKGYMSVIAHYIDDSWVLQSRMLRFIYVPIPRTMDVIAQNLMDALMG WNIETKLSTITVENCTSGDGMLSIIVDKLSSSLLLDGKIVHVRCFAHVVDLVVKDGLS LVENAIERMRDSVAFWSATPSRVDNFEAVARQAKISSLNKLGLDCKTCWKSTYLMLKT AIWYKDLFPKLLLRDEHYTCVPTDDDWKMGKNIAEKLAYDDVVISSMAIKMFEKFGKY WNVIHVGLAVAAVLDPRYKLKAVEFYFHRIYGDNALLEIEKVKRTCYELLHEYQRKSH VSPTSSQASSLQVSNGPTFDSEDIPSDLIAFLSESSTNVDVGCELDHYLDEPILPWTR DFDILSWWKTMGIRFTTLQKIAKDFLAIPVSTVSSDSTFGTSGRRVVSLHRSRLHPNT LEALMCSHDWLWKSSEVEDSNCLCIADEDEEG" mobile_element complement(1420995..1421074) /note="source:scaffold_4_CACTA_0483 985 1064" /mobile_element_type="transposon:TIR/CACTA" gene 1421442..1423272 /locus_tag="TCM_012172" /note="dbxref CacaoGD:Thecc1EG012172" mRNA join(1421442..1421515,1421949..1422062,1422432..1422545, 1422651..1422787,1422868..1423272) /locus_tag="TCM_012172" /product="Ribosomal protein L24e family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s15070.1" /inference="similar to AA sequence:Phytozome:POPTR_0009s15070.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07252t00001" CDS join(1421982..1422062,1422432..1422545,1422651..1422787, 1422868..1423042) /locus_tag="TCM_012172" /codon_start=1 /product="Ribosomal protein L24e family protein" /protein_id="EOY20833.1" /db_xref="Phytozome:POPTR_0009s15070.1" /db_xref="TAIR:AT2G44860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B8C0H2" /translation="MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKR NPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRSIAENTLKAIKKIAKIRSD RSSDHIKNRLKTGKIQRQKEARKQLEQDIHLVKAPLALAQDSSLRLPKIKVNVSQTQT EENQQMEE" mobile_element complement(1424427..1424735) /note="source:scaffold_4_CACTA_0482 6075 6411" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1424764..1424814) /note="source:scaffold_4_CACTA_0511 7128 7180" /mobile_element_type="transposon:TIR/CACTA" gene 1425073..1429485 /locus_tag="TCM_012173" /note="dbxref CacaoGD:Thecc1EG012173" mRNA join(1425073..1427115,1427461..1427529,1428783..1429485) /locus_tag="TCM_012173" /product="Armadillo repeat only 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010488t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09440.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g732t1" CDS join(1425296..1427115,1427461..1427485) /locus_tag="TCM_012173" /note="paralog of Thecc1EG010488t1" /codon_start=1 /product="Armadillo repeat only 4" /protein_id="EOY20834.1" /db_xref="Phytozome:POPTR_0015s09440.1" /db_xref="TAIR:AT3G26600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEX6" /translation="MAAAAAAKATAAAEEEKTKTLQQELSLPIMLADRVIKSAQEAES SKFECAELAKQVDRLSQMLRSFVRLSATANATVYDRPVRRIASDITKTLERALSLTRK CRHSGPLRHLFSITTTADFRKVSNLLESSIGDMRWLLSLFDSDGTNLTLPPVASNDPI LAWVWSYISTIHMGPLKDRVDAANELASLAKDNDRNKKMIVVEGGVSPLLKLLKEGAS PEAQIAAANALYNLATDEERVRLIVDVMGIPIIVGVLGEAQMKVQIMVASLVARMAEM DLVASEEFVRENVTRKLVSLLSMDMVLEVVKPQTAKASIHSIIQMNKEMTDNSLRHPK LLSVHTSSFSDGSSRNRKEREAESPEVKLKLQVSCAEALWKLSKGSLLTSRKITETRG LLCLAKIVEKEKGDLQFNCLMTIMEITAVAEFNADLRRAAFKTNSPAAKAVLDQLLKV IQEESSPTLQIPAIRSIGCLARTFPARETRIIGPLVDKLSNRNVEVAMEAACALGKFA SPDNFNGSEHSKAIIEFGGVPSLMRLLQSNDQAQVHGLVLLCYLALNAGNSNALEEAR ALNTLEGAARSVIAQYPDLKDLFAKAIHHLTLYQAGGHPHRCEKIYFS" gene complement(1435677..1437590) /locus_tag="TCM_012174" /note="dbxref CacaoGD:Thecc1EG012174" mRNA complement(join(1435677..1436905,1437036..1437165, 1437277..1437590)) /locus_tag="TCM_012174" /product="Myb domain protein 86" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08600.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s08600.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2493t2" CDS complement(join(1436053..1436905,1437036..1437165, 1437277..1437409)) /locus_tag="TCM_012174" /codon_start=1 /product="Myb domain protein 86" /protein_id="EOY20835.1" /db_xref="Phytozome:POPTR_0012s08600.1" /db_xref="TAIR:AT1G57560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEX5" /translation="MGRHSCCIKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLA GLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDN EIKNFWNSCLKKKLMKQGIDPTTHKPLSNKVEVKEEKNRTDSVVLQVPQSSGLSASAV SSFAAHEPTFLVSDSGFYGSGLTEASRDQFINKQVYDPLAYIELQAGIDPSGYNSNLV PQYHPSVRQFDQNHFETNSSFTFTSMPSLTNFDHGNMSGTDFSDNSASRISTSFLLNE AKESSSNSSNISSYTGFQMNNMVENGAFSWDTENKLDTMFQFQVNGIKSEELKPGSWQ EGQGQLHNHNSVDFSSYPLTSLSEDLTGANFDVFQQI" mobile_element complement(1436824..1436909) /note="source:scaffold_3_CACTA_0395 937 1022" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1441206..1441260 /note="source:scaffold_3_CACTA_0390 1971 2025" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1443154..1443236) /note="source:CACAO_on_E172_scaffold_5 367 458" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(1445010..1445112) /note="source:CACAO_M_E427_F230_scaffold_1 1093 1275" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1445025..1445093 /note="source:CACAO_M_E12463_F12_scaffold_3 4560 4628" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1445701..1446934) /locus_tag="TCM_012176" /note="dbxref CacaoGD:Thecc1EG012176" mRNA complement(1445701..1446934) /locus_tag="TCM_012176" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage" CDS complement(1446587..1446880) /locus_tag="TCM_012176" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20836.1" /translation="MRYIPLEMTPGGKYHGIMNLLKFCMHCKIARVSIPNFLEANRGH LERPVAPNSHALVVKSEVTLLGLAGDKKYSYLFYGDKQKFRSQAKDLIIWGEG" gene complement(1446908..1456307) /locus_tag="TCM_012177" /note="dbxref CacaoGD:Thecc1EG012177" mRNA complement(join(1446908..1447054,1450888..1451522, 1451603..1451902,1456277..1456307)) /locus_tag="TCM_012177" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.37 coverage" CDS complement(join(1451471..1451522,1451603..1451823)) /locus_tag="TCM_012177" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20837.1" /translation="MEGRVLRDNYGTILLQFSKQLVGVMQVWLNCLLLKKPCFSLLLP FGSELMNLSSKVTVLMLWNKPQILNLPFACNSPIPLLKKALADLKS" mobile_element 1453589..1453626 /note="source:scaffold_2_CACTA_0263 5447 5484" /mobile_element_type="transposon:TIR/CACTA" gene 1456338..1460100 /locus_tag="TCM_012179" /note="dbxref CacaoGD:Thecc1EG012179" mRNA join(1456338..1457424,1458037..1458477,1458562..1458704, 1458858..1458948,1459051..1459193,1459829..1459917, 1460068..1460100) /locus_tag="TCM_012179" /product="Histone deacetylase 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007621t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s09400.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8061t1" mRNA join(1456862..1457424,1458037..1458477,1458562..1458704, 1458858..1458948,1459055..1459286) /locus_tag="TCM_012179" /product="Histone deacetylase 6 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007621t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s09400.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc509t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8061t1" CDS join(1456885..1457424,1458037..1458477,1458562..1458704, 1458858..1458948,1459051..1459193,1459829..1459883) /locus_tag="TCM_012179" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG007621t2" /codon_start=1 /product="Histone deacetylase 6 isoform 1" /protein_id="EOY20838.1" /db_xref="Phytozome:POPTR_0015s09400.1" /db_xref="TAIR:AT5G63110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22446" /translation="MEDSAGGASLPSGPDAKKRRVTYFYEPTIGDYYYGQGHPMKPHR IRMAHNLIVHYSLHRRMEINRPFPAGPADIRRFHTDEYVDFLNSVSPESISDPTYSRH LKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEAS GFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFP GTGHIRDVGVGNGKHYALNVPLNDGMDDESFRGLFQPIIQKVMEVYQPDAVVLQCGAD SLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGV EPDNKLPYNEYYEYFGPDYTLHVAPGNMENLNAPRDMEKIRNTLLEQLSKLSHAPSVP FQTTPSTIQAPEEAEEDMDKRPKPRIWNGDDYESDPEDDEKTLCRFSSSDAKQTTTDA EMRDVPEDLKEVQAEGQPTS" CDS join(1456885..1457424,1458037..1458477,1458562..1458704, 1458858..1458948,1459055..1459192) /locus_tag="TCM_012179" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG007621t2" /codon_start=1 /product="Histone deacetylase 6 isoform 2" /protein_id="EOY20839.1" /db_xref="Phytozome:POPTR_0015s09400.1" /db_xref="TAIR:AT5G63110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22446" /translation="MEDSAGGASLPSGPDAKKRRVTYFYEPTIGDYYYGQGHPMKPHR IRMAHNLIVHYSLHRRMEINRPFPAGPADIRRFHTDEYVDFLNSVSPESISDPTYSRH LKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEAS GFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFP GTGHIRDVGVGNGKHYALNVPLNDGMDDESFRGLFQPIIQKVMEVYQPDAVVLQCGAD SLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGV EPDNKLPYNEYYEYFGPDYTLHVAPGNMENLNAPRDMEKIRNTLLEQLSKLSHAPSVP FQTTPSTIQAPEEKRIWINGQNLAYGMVTIMSQILKMMRKLYADSQVLMQNRLQQMLK " gene 1458923..1477696 /locus_tag="TCM_012180" /note="dbxref CacaoGD:Thecc1EG012180" mRNA join(1458923..1458948,1459051..1459193,1459829..1460142, 1474897..1476202,1477250..1477696) /locus_tag="TCM_012180" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09390.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s09390.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc509t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc509t10" mRNA join(1459915..1460142,1474897..1476202,1477250..1477273) /locus_tag="TCM_012180" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09390.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s09390.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc312t14; alternateUTRof:Thecc1EG012180t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc509t10" gene 1460869..1463866 /locus_tag="TCM_012181" /note="dbxref CacaoGD:Thecc1EG012181" mRNA join(1460869..1461127,1461326..1462122,1463506..1463866) /locus_tag="TCM_012181" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012182t1" /note="quality class is medium-utrpoor, express is strong, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g786t1" CDS join(1461007..1461127,1461326..1461537) /locus_tag="TCM_012181" /note="paralog of Thecc1EG012182t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20842.1" /translation="MNQQSSNSVMSGSLVKLATALVLLLLLVGELAATSALAPSGREK SPSDVLFGGSSLRKMSPGKDGYSRRESLVISSYRKFRKLGKVEPFQPAPTVNGPTFMT APPTPIPY" gene 1461405..1477815 /locus_tag="TCM_012182" /note="dbxref CacaoGD:Thecc1EG012182" mRNA join(1461405..1461533,1476737..1477051,1477250..1477815) /locus_tag="TCM_012182" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012181t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc312t9" mobile_element complement(1461825..1461984) /note="source:CACAO_Mariner_E220_scaffold_9 15091 15241" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(1462013..1462566) /note="source:INTACT445_F217_scaffold_8-int 1244 1794" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(1462693..1462859) /note="source:CACAO_Mariner_E220_scaffold_9 14843 14995" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 1464050..1464344 /note="source:scaffold_9_CACTA_0946 1575 1868" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1465508..1467578 /note="source:CACAO_M_S_E17777_F2_scaffold_3 2225 3967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1466399..1468446) /note="source:CACAO_M_E3248_F5_scaffold_1 1653 3653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1468382..1468456 /note="source:INTACT146F_F14_scaffold_2-int 5758 5832" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1469250..1469301) /note="source:scaffold_1_CACTA_0011 526 578" /mobile_element_type="transposon:TIR/CACTA" gene 1470088..1473606 /locus_tag="TCM_012183" /note="dbxref CacaoGD:Thecc1EG012183" mRNA join(1470088..1470716,1471461..1471651,1473074..1473175, 1473268..1473606) /locus_tag="TCM_012183" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene29884" /note="quality class is medium-expresste, express is medium, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc5189t1" mobile_element 1470204..1471928 /note="source:scaffold_9_CACTA_0946 1 1745" /mobile_element_type="transposon:TIR/CACTA" CDS join(1470283..1470716,1471461..1471651,1473074..1473175, 1473268..1473458) /locus_tag="TCM_012183" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20844.1" /translation="MNEEMEALQKNATWKLILLTEGKKTIGFRWVFTVKLKVNGRIDR YKVRLVAKGYTQRYGVDYQETFAPVAKINIICIFIFIAVNRDWPLQQFDVKNAFLSRD LEEEVYMELLLGIKHSYLCKRKVGKLKKSLYGLKQSPKAWFGRSILKELGVEYTKPMN LYCDNEAAIEIAQNLVQRDRTKHVEIDRHFIKENLDQKVMQFPFVQSEGVVPWTLVKL ATALLALILLITGHLPVISALVPSGGEKSPSDVLFCGRSRSWRKMFLGKDYGCSGSES LSILAQESCLPELSSRQDATHSTIAKLKS" CDS 1475185..1476198 /locus_tag="TCM_012180" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY20840.1" /db_xref="Phytozome:POPTR_0015s09390.1" /db_xref="TAIR:AT5G63100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSI4" /translation="MLNKAMFQCSISYQIRPFFPYPNQITRHPLKPGLLTHHFFPEVP PKPIHLRLPPPKSGQTHQPKPQTKTQDDGIPIEDVKIIAKFKTRHNYIRVLEVSRRAD HPFAGSRLLLLDSPGNIHSISFLFKLLTNTYFDVFATLPPVLPPGPVGILGFGAGSTA RLMLELYPELIIHGWELDPSVVAVGREYFGLGKLEKQYPDRLYIYIGNALKASIKNGF SGVLVDLFSKGSLIPELQDPNTWQKLRKSLRKGGRIMVNVGGSCVEAEDSRRHGKVVM EETLKAMHRVFGDKLFVLNLGNRKDDSSLALTGELPDLDEWKKALPRSLKCYADMWTP FHG" CDS 1475185..1476198 /locus_tag="TCM_012180" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY20841.1" /db_xref="Phytozome:POPTR_0015s09390.1" /db_xref="TAIR:AT5G63100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSI4" /translation="MLNKAMFQCSISYQIRPFFPYPNQITRHPLKPGLLTHHFFPEVP PKPIHLRLPPPKSGQTHQPKPQTKTQDDGIPIEDVKIIAKFKTRHNYIRVLEVSRRAD HPFAGSRLLLLDSPGNIHSISFLFKLLTNTYFDVFATLPPVLPPGPVGILGFGAGSTA RLMLELYPELIIHGWELDPSVVAVGREYFGLGKLEKQYPDRLYIYIGNALKASIKNGF SGVLVDLFSKGSLIPELQDPNTWQKLRKSLRKGGRIMVNVGGSCVEAEDSRRHGKVVM EETLKAMHRVFGDKLFVLNLGNRKDDSSLALTGELPDLDEWKKALPRSLKCYADMWTP FHG" CDS join(1476856..1477051,1477250..1477470) /locus_tag="TCM_012182" /note="paralog of Thecc1EG012181t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20843.1" /translation="MYKKLGKLAYKKNPCALNVPEFYQNMNQQSSNSVMSGSLVKLAT ALVLLLLLMGELAATSALVPSGREKSPSNVLFGGSSLRKMFPGKDGYSRRENLVISRN RKLQKVGKVQPSPPSPTRNQQKIMGVPPAPPPPIPY" gene 1478222..1480095 /locus_tag="TCM_012184" /note="dbxref CacaoGD:Thecc1EG012184" mRNA join(1478222..1478414,1479453..1479602,1479699..1480095) /locus_tag="TCM_012184" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage" CDS join(1479482..1479602,1479699..1479934) /locus_tag="TCM_012184" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20845.1" /translation="MKLRSSTSARSGSLVKLATTLAVLLLIIGHLPTNSALVPSGGEK RPTKSNVLFCGSSWRKMFLASDHGCSGSESLSIYSTRKLPSRSLKAGKVPPSPPSPTQ NQRAGMATPPPFSLKL" gene 1481932..1482549 /locus_tag="TCM_012185" /note="dbxref CacaoGD:Thecc1EG012185" mRNA 1481932..1482549 /locus_tag="TCM_012185" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" CDS 1482189..1482434 /locus_tag="TCM_012185" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20846.1" /translation="MYYFYVLKGEDKSLLHVPRCGSRKTFPGEDGSLDCQSLVFSSRR KLSFRSLRSTSTLSPPPSPTIGKAKAMAVPAPPPPAL" gene 1483196..1484120 /locus_tag="TCM_012186" /note="dbxref CacaoGD:Thecc1EG012186" mRNA 1483196..1484120 /locus_tag="TCM_012186" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09390.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006914t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007674001" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2658t1" CDS 1483616..1483891 /locus_tag="TCM_012186" /note="paralog of Thecc1EG006914t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20847.1" /db_xref="Phytozome:GSVIVT01007674001" /translation="MRLVHIRVIISRLGLDPICGSAFVTGYSKLCLVDEASKVFNGMP EKDLVLWNSTGSGYGNCGLLYKGLELFSWMRHVGQQPDGYTLVGLIS" gene 1484176..1485126 /locus_tag="TCM_012187" /note="dbxref CacaoGD:Thecc1EG012187" mRNA join(1484176..1484222,1484394..1485126) /locus_tag="TCM_012187" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006914t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09390.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g711t1" CDS join(1484216..1484222,1484394..1484833) /locus_tag="TCM_012187" /note="paralog of Thecc1EG006914t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20848.1" /db_xref="Phytozome:POPTR_0015s09390.1" /translation="MQGLALNGMAYQAFKMFDEMLMVGLKPDDLTFSALLTARCYAGP LDNGWEIFRRMKYEFSIQPRIEHGKASWDGWRVGRCIQFYLGLAKSSGLWHLGVLLSC FDGHGNSELAEVVSQQLLENEPKKVLIELCFHIYMLLMVGGMMCRS" gene complement(1485128..1488163) /locus_tag="TCM_012188" /note="dbxref CacaoGD:Thecc1EG012188" mRNA complement(1485128..1488163) /locus_tag="TCM_012188" /product="Disease resistance protein family, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m013889" /inference="similar to AA sequence:ricco:30147.m013889" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(1485703..1487883) /locus_tag="TCM_012188" /note="dbxref ricco:30147.m013889" /codon_start=1 /product="Disease resistance protein family, putative" /protein_id="EOY20849.1" /db_xref="TAIR:AT3G07040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAW5" /translation="MAEALVKFFVQRLNSLLVEETETFSGLEDQMDRLVNTLREVGQF TEEMSCEEGDAATYSWVNELRELISEMDDHIDEFIIQMDKQKKSDCLVLTDCFRSELL KIESRLALAVHRMTELKNPTTVEEMEYSMENPHELEGREEDDRKKSQEGASQIASPKN SATIGGENEDDKDDSQDIGDSQTSALKISTTTGGDEEDKMETSHGVEEGETSDQTFSQ FQLVYNKLPYYLQSCFLYCCTFPKDYRIHKGRLIQLLVAEGLVQGKTGEIMEDIAEEN INELIIQNMLQEEDDNPNRLSVPYLYRDFCIHKMEKKIFTATCTSPIFIFPRSARRVS IDLDKITITPDLTDLQPRSLFLFGYQDLPEHDRNWLTLPWAKFLRVLDLEGRKIKSLP DEVEYLIHLRYLGLRKTNINQLPAGLGNLRALQTLDLRWCGYFKALPAKIINLAKLRH LKLGPNNSWGTTPSAGIGKLKNLLTLTGIHADYCITRELGNLVQLRKVGIIDVTGENV GEVFASIGNMQGLLCLSLVGKYVNPQQVLVLPDSISPPPTIRKLRLDGLLQKLPQWLG SMKMLTKLRLGFSYLSENPMLVLHLLPNLTRLTLWQAYVSKQLGKEFCRVGWFPKLQF LQIASDVLEEWTEIEKGALPSLNCLHFHCCSKLRMLPEGLQFVTTLKHLYLFPLLDDH MERLKPDGGEENYKIKHISQISFIPTSCCGPSAGWNAGDICVDK" gene 1488264..1491027 /locus_tag="TCM_012189" /note="dbxref CacaoGD:Thecc1EG012189" mRNA join(1488264..1488699,1489342..1489485,1489765..1489868, 1489998..1490194,1490717..1491027) /locus_tag="TCM_012189" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08550.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007676001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g723t1" CDS join(1488490..1488699,1489342..1489485,1489765..1489868, 1489998..1490194,1490717..1490775) /locus_tag="TCM_012189" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20850.1" /db_xref="Phytozome:GSVIVT01007676001" /translation="MKEQWEIHYSRFFNFPGLPSTCLSLKPLPSRKLRSIGNWVSSPS LASLQLITNPYAHGTVLVVSFQGKIHEEHYASKLHFTWPQVSCPAECPVRGSKVVFAS YKDREGQASFCLYSLRESLKDARNVWLPSSNRGLATSLTSESVDLNGFTSRPAVELCH VNPIGNHEPLQQPPSNDKGLKCPCPKESIFSPNPGAKDANFPSSFTALLSDSCIETEQ DMLTKMEMAIDDLGGDLAP" mobile_element 1492021..1492073 /note="source:scaffold_5_CACTA_0596 1735 1788" /mobile_element_type="transposon:TIR/CACTA" gene 1498789..1502069 /locus_tag="TCM_012190" /note="dbxref CacaoGD:Thecc1EG012190" mRNA join(1498789..1499433,1501786..1502069) /locus_tag="TCM_012190" /product="Lateral organ boundaries domain family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016952t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09370.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc7598t1" CDS 1498799..1499362 /locus_tag="TCM_012190" /note="paralog of Thecc1EG016952t1" /codon_start=1 /product="Lateral organ boundaries domain family protein" /protein_id="EOY20851.1" /db_xref="Phytozome:POPTR_0015s09370.1" /db_xref="TAIR:AT5G63090.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FML4" /translation="MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHK IFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKE LDAANADLIRYACNDIPTALPAPPGASSVQPLTPRHRPADFNRRIGNEGAGGFYHPTG AFPLPYSFPWNDNSSGDINDGGGEGGM" gene 1508751..1509824 /locus_tag="TCM_012191" /note="dbxref CacaoGD:Thecc1EG012191" mRNA join(1508751..1509224,1509557..1509824) /locus_tag="TCM_012191" /product="Oleosin family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09360.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400031681" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00562t00003" CDS join(1508838..1509224,1509557..1509697) /locus_tag="TCM_012191" /codon_start=1 /product="Oleosin family protein, putative" /protein_id="EOY20852.1" /db_xref="Phytozome:PGSC0003DMP400031681" /db_xref="TAIR:AT3G01570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1G351" /translation="MAEYQQQNLQYPQQQPQTDNYNNYFQDNHPSTSKVLAVVTLLPV AGTLLGLAGLSLVGTLIGLAFAIPLFLLFSPVLVPAALVIAGSVAGFLTSGAFGITGL SSLSWIVNYLRGTRGSMSQRLDHAKRRSFLCYLLCFQLLACKNQYKVGEGQEGYTKCM KTNQMNAGGKTKQNE" gene 1509892..1514265 /locus_tag="TCM_012192" /note="dbxref CacaoGD:Thecc1EG012192" mRNA join(1509892..1510945,1511267..1511464,1511628..1511767, 1511890..1511979,1512094..1512199,1512275..1512426, 1512507..1512604,1512760..1512898,1513673..1513771, 1513962..1514265) /locus_tag="TCM_012192" /product="Kinase family protein / peptidoglycan-binding LysM domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010473t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09350.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc9883t1" CDS join(1510300..1510945,1511267..1511464,1511628..1511767, 1511890..1511979,1512094..1512199,1512275..1512426, 1512507..1512604,1512760..1512898,1513673..1513771, 1513962..1514126) /locus_tag="TCM_012192" /note="paralog of Thecc1EG010473t1" /codon_start=1 /product="Kinase family protein / peptidoglycan-binding LysM domain-containing protein, putative" /protein_id="EOY20853.1" /db_xref="Phytozome:POPTR_0015s09350.1" /db_xref="TAIR:AT1G51940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEW7" /translation="MSPSNLHCFLSVMTIIFAGFLFDFPIESTLVYPLGCASNIPSCN SYLYHISKGLSIEEMANFYSVNTSQIQSITHDAKLDYLVSVPCTCKDVNGTLGYFYDT LYKVKPGDTYAGVSGEFYSGQAWMIAAEEQLLVAGDMITIHLVCGCLGVENQEAATYT VQDRDTLLQIAELLSANLSEIENLNRNLIRNPNFIDIGWVLFVPIGKRKIQAPKAGKR HNLPIIIGTILVVTLLSMSMLVRFLIRRNRNHRKNRDLEAVNKSPSAKKSSSQNQLLQ DKYMEGVASIESERPVTYSLEEINEATNNFDESRKIGQGGYGTVYIGLLKEQEVAIKK MKFSQSKEFFAELKVLCKIHHINVVELLGYARGDNHLYLIYEYIQNGSLNDHLHDPVL KGHLPLSWTARANVALDAARGIEYIHDHTKTRYVHRDIKTSNILLDQRLEAKVADFGL ARLVERSNEEDVVATCLVGTPGYIAPECARELQMTSKTDVFAFGVVLAELVTGQRALI RNNQEPNKMKSLVSVIYTIFQVTDKEGALEANIDANLRGSYPMEEVYKMAELSRQCLN EDAMNQPAMREVVQKLSQILTSSIEWEAALRGNNCVFSRMLKGR" mobile_element complement(1513173..1513367) /note="source:CACAO_M_S_E145568_F62_scaffold_10 136 339" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1514486..1518770 /locus_tag="TCM_012193" /note="dbxref CacaoGD:Thecc1EG012193" mRNA join(1514486..1514935,1515110..1515259,1515378..1515440, 1515541..1515717,1515810..1515913,1516468..1516575, 1516760..1516856,1516996..1517093,1517409..1517550, 1517678..1517800,1518413..1518770) /locus_tag="TCM_012193" /product="Clathrin adaptor complexes medium subunit family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004093001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010472t1" /inference="similar to AA sequence:ricco:30147.m013894" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8062t2" CDS join(1514807..1514935,1515110..1515259,1515378..1515440, 1515541..1515717,1515810..1515913,1516468..1516575, 1516760..1516856,1516996..1517093,1517409..1517550, 1517678..1517800,1518413..1518511) /locus_tag="TCM_012193" /note="dbxref ricco:30147.m013894; paralog of Thecc1EG010472t1" /codon_start=1 /product="Clathrin adaptor complexes medium subunit family protein" /protein_id="EOY20854.1" /db_xref="TAIR:AT1G60780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGX7" /translation="MAGAASALFLLDIKGRVLIWRDYRGDVPAAEAERFFTKLIEKQG GDPQSQDPVVYDNGVTYLFIQHNNVYLLTASRQNCNAASLLLFLHRIVDVFKHYFEEL EEESLRDNFVVVYELLDEMMDFGFPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAV SWRSEGIRYKKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLN DRVLLEAQGRATKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQ VKPLIWVEAQVEKHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNLNTRTSMG SARYAPENDALVWKIKSFPGNKEYMLRAEFRLPSITAEEAAPERKAPVRVKFEIPYFT VSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLM" gene 1521843..1522847 /locus_tag="TCM_012194" /note="dbxref CacaoGD:Thecc1EG012194" mRNA join(1521843..1522034,1522226..1522342,1522428..1522463, 1522560..1522847) /locus_tag="TCM_012194" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012195t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g727t1" CDS join(1521880..1522034,1522226..1522342,1522428..1522463, 1522560..1522581) /locus_tag="TCM_012194" /note="paralog of Thecc1EG012195t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20855.1" /translation="MEDDPEPDIALHFFQNFLCFLKMDGIGKTKAEQELQSCYSIIRA VLSSGHWRGLEQFRLWGVHVCMFAAPVGTTRFVDKSIKIVWMGPSSIASSKEQYEKLF RSFKGMG" mobile_element 1525239..1528189 /note="source:CACAO_M_E12137_F33_scaffold_3 1 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1529028..1530357 /locus_tag="TCM_012195" /note="dbxref CacaoGD:Thecc1EG012195" mRNA join(1529028..1529217,1529305..1529521,1529607..1529967, 1530049..1530357) /locus_tag="TCM_012195" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012196t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g15343t00001" CDS join(1529063..1529217,1529305..1529368) /locus_tag="TCM_012195" /note="paralog of Thecc1EG012196t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20856.1" /translation="MEDDPEPDIALHFFQNFQCFLKMDGIGKTKAEQELQSCYSIIGA VISSGHWSNLSQCRKRHWSKKPPYFMLL" gene 1532698..1534024 /locus_tag="TCM_012196" /note="dbxref CacaoGD:Thecc1EG012196" mRNA join(1532698..1532886,1532976..1533193,1533280..1533641, 1533763..1534024) /locus_tag="TCM_012196" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012195t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g746t1" CDS join(1532732..1532886,1532976..1533039) /locus_tag="TCM_012196" /note="paralog of Thecc1EG012195t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20857.1" /translation="MEDDPEPDIAFHIFQNFQCFLKMDGTGKKKAEQAFQSCYSIIGA VISSSHWSNLSQCRKRHWSKKPPYYTLL" gene 1535100..1536109 /locus_tag="TCM_012197" /note="dbxref CacaoGD:Thecc1EG012197" mRNA join(1535100..1535280,1535439..1535587,1535670..1536109) /locus_tag="TCM_012197" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13141t00001" CDS join(1535126..1535280,1535439..1535587,1535670..1535845) /locus_tag="TCM_012197" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20858.1" /translation="MEDDPEPDTELHFFQNFHCYLKMDGIGKAKAKLALQSCNNIIGA VLSSCHWRAIDRGCVAEEIRANHVVGCPCLYVSSFSWHNTVSRQVHQDCLDESKLSVM IHQKSNMKRSSVTASQQETMHDQAEGFDHEFLHLELIWQDELSGLLREYADNAFKES" mobile_element 1537978..1538351 /note="source:scaffold_6_CACTA_0700 7285 7631" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1538351..1539106 /note="source:scaffold_6_CACTA_0700 10007 10745" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1543412..1544594) /note="source:CACAO_M_S_E145568_F62_scaffold_10 1941 3099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1544595..1547313 /note="source:CACAO_M_E12138_F73_scaffold_3 1 2719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1547314..1548848) /note="source:CACAO_M_S_E145568_F62_scaffold_10 409 1945" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1548851..1549229) /note="source:CACAO_M_S_E145568_F62_scaffold_10 2628 2995" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1549600..1551128 /locus_tag="TCM_012200" /note="dbxref CacaoGD:Thecc1EG012200" mRNA join(1549600..1549899,1550491..1551128) /locus_tag="TCM_012200" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS join(1549881..1549899,1550491..1550903) /locus_tag="TCM_012200" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20859.1" /translation="MHHQTLYVIVNFPKGETAQYGSSGLIKEISGREFNNKSNSTVGN NLVDQLKSHYPFDSTNFLTQLLSTKSIPIELATSLKGRSPSQTSCQNLTTHLSPTDQC TWVLLCKSSVDDIKFGFQASADTFCFFGGLVIASVQYIGED" gene 1553109..1554493 /locus_tag="TCM_012201" /note="dbxref CacaoGD:Thecc1EG012201" mRNA join(1553109..1553275,1553418..1553884,1554467..1554493) /locus_tag="TCM_012201" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13040t00001" CDS join(1553142..1553275,1553418..1553484) /locus_tag="TCM_012201" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20860.1" /translation="MEDNLDPDIESDCLSSSSSLKEIVCQWRQQMLRNSLGHSPFLVS RHLSQYRKRLISKMASRCSLTW" gene complement(1554107..1558499) /locus_tag="TCM_012202" /note="dbxref CacaoGD:Thecc1EG012202" mRNA complement(join(1554107..1554665,1554786..1555084, 1555166..1555446,1556016..1556319,1557947..1558499)) /locus_tag="TCM_012202" /product="Tryptophan aminotransferase related 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g18880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010471t1" /inference="similar to AA sequence:ricco:30147.m013897" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00493t00002" CDS complement(join(1554481..1554665,1554786..1555084, 1555166..1555446,1556016..1556319,1557947..1558236)) /locus_tag="TCM_012202" /note="dbxref ricco:30147.m013897; paralog of Thecc1EG010471t1" /codon_start=1 /product="Tryptophan aminotransferase related 2, putative" /protein_id="EOY20861.1" /db_xref="TAIR:AT4G24670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94A02" /translation="MLQFSLREMAKFLSVFSVRNLLVLSLALNVSLVLRVLVLHDSQN GSFNGFFFEKQNGPQEEAHASKRARLSSSVSSSSSSPLTMAQGDQDRVINLDHGDPTM YENYWQKKGDETTIVIPGWQFMSYFSDPTSLCWFLEPEFAKQVVRLHKVVGNAVTENR HIVVGTGSTQLFQAALYALSLKTEAEPVSVVSAAPYYSSYPVITDCLRSGLYKWAGDA RSFSKNGPYIELVTSPNNPDGFVRHSIVNRSEGILIHDLAYYWPQYTPISSPANYDLM LFTVSKSTGHAGMRIGWALVKDEDVAKRMTKYIELNTIGVSKDSQLRAATVLKVISDS CERSDEEGDSFFEFSYRLMAKRWKQLREAVHQSGLFSVPDFPPQFCNFLIRVFEPQPA FAWVKCEGEIEDCESFLRGKKILTRGGKHFGVSPKYVRISMLDRDNNYDTFVERMSTI QS" gene complement(1561991..1565374) /locus_tag="TCM_012206" /note="dbxref CacaoGD:Thecc1EG012206" mRNA complement(join(1561991..1563315,1564606..1565374)) /locus_tag="TCM_012206" /product="Apoptosis-stimulating of p53 protein 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08510.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s08510.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06028t00001" CDS complement(join(1562263..1563315,1564606..1564995)) /locus_tag="TCM_012206" /codon_start=1 /product="Apoptosis-stimulating of p53 protein 1, putative" /protein_id="EOY20862.1" /db_xref="Phytozome:POPTR_0012s08510.1" /db_xref="TAIR:AT5G14540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3C5" /translation="MEKRITQLPKSRNVFFDDDDDEYDVEPQLLHSSNFRPIPTKHTA LDRDTGDRGVGASSYGAALIAEIDRKIKEHTENVVCVVGGLSARVSQLESRTRQLENA VGDLKGSVEFNHGRVEGKIRELGNVLGEVRGGIHDLRDKHEIAEAKLQLAKLTLSKVY QSSATRVGSAQELSSSVPQQSQLQVSVTCPQQLSPLPSGAAQNLLQQNTQSSHEAATP PQLPTQLPPGAFPCIPHSQSNYPLPMLTPDTTHQQYLAPLDQQMQQPIPALTQPYQPP PQLSPIPQLSQLQQQHPLINTVNTHANLPLGYQPKDVPCLPSQSIHKSSVPPAYEYFV SSKQQIQDQSANNPYKELPSGYSQPQRIHNLNNQYPYGASSSGYNGSPTKPSQLSPSS VVGAGNSYSRLPTAKILPYALPTASSVDSGSNSSESGNRIRVDDVIDKVVAMGFRRDL VRATVRKLTANGQSVDLNVVLDKLMNSQDV" gene complement(1566534..1570288) /locus_tag="TCM_012207" /note="dbxref CacaoGD:Thecc1EG012207" mRNA complement(join(1566534..1567900,1567995..1568090, 1568171..1568538,1568646..1568823,1568958..1569017, 1569084..1569607,1569691..1570288)) /locus_tag="TCM_012207" /product="Raffinose synthase family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene28488" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012210t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09330.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc8331t2" CDS complement(join(1567523..1567900,1567995..1568090, 1568171..1568538,1568646..1568823,1568958..1569017, 1569084..1569607,1569691..1570177)) /locus_tag="TCM_012207" /note="paralog of Thecc1EG012210t1" /codon_start=1 /product="Raffinose synthase family protein, putative" /protein_id="EOY20863.1" /db_xref="Phytozome:POPTR_0015s09330.1" /db_xref="TAIR:AT5G40390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5VQG4" /translation="MAVSLTRKDLDAMRFLNGEVPTSITLAGTDFLANGHPILTEVPS NIVATPSPYSFPDNTKNNSTADHGCFVGFDVGEPSSCHVVPIGKLSGVRFMSIFRFKL WWSTHWVGSSGREVQYETQMMVLDKSDLGRPYVILLPIIEGSFSSSLQPGIDDNVDIC VERGHESGQGTSGDIQASSGEKPTRHSGQIRLVHLGCLFSLRTSERCVGRGQGPGCPP GMLIIDDGWQSICLDDDPIDNEGIDRTANGEEKPYRLVKFQENYRFKDFESTKTPSNK GMGAFVKELKEEFKTVKDVYVWQALCGYWGGIRPKFSGMPESRIVKAHASPSMLKTMK DFAGLHSHLESVGIDGVKIDVIEVLELLSEDYGGHVELSKAYFKALTASLRKHFNGNG VISSMQQASDFFFLGTETIALGRAGDDFWCIDPYGDPTGIFWLQGCHMVHCAYNSLWM GNFIHPDWDMFQSHHPCAKFHAASLAISGGPVYVSDFVGEYNFDLLKKLALPDGSILR CQHYALPTRDCLFEDPLHDGITALKIWNLNKYSGVIGLFNCQGGGRCPHSRRNKSAPE FANPVYQSKKLKLMKSSEQMEVALEPLNYELLTVSPVAILPKKQIQFAPIGLVNMLNS GGAIQSLAFDGDENLVRIGVKGRGELRVFASEKPWACKIDGVPVEFGYDEQMVRIEVP GLNSPLPPMVEYFF" gene complement(1570928..1571594) /locus_tag="TCM_012209" /note="dbxref CacaoGD:Thecc1EG012209" mRNA complement(join(1570928..1571269,1571354..1571594)) /locus_tag="TCM_012209" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage" CDS complement(join(1571201..1571269,1571354..1571590)) /locus_tag="TCM_012209" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20864.1" /translation="MHESLHLLHIHTKLGQEMIQSLTKRGMSLLSKSDSHGILWGDFE TLKVPHGCGGLLFIFILYKGNASLCFNHSNFPESQPVLGHSGFHDGKEPLERAIWLI" gene complement(1571680..1576214) /locus_tag="TCM_012210" /note="dbxref CacaoGD:Thecc1EG012210" mRNA complement(join(1571680..1572690,1572778..1573145, 1573258..1573435,1574412..1576214)) /locus_tag="TCM_012210" /product="Raffinose synthase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016942t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09330.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1573t1" CDS complement(join(1572127..1572690,1572778..1573145, 1573258..1573435,1574412..1575638)) /locus_tag="TCM_012210" /note="paralog of Thecc1EG016942t1" /codon_start=1 /product="Raffinose synthase family protein" /protein_id="EOY20865.1" /db_xref="Phytozome:POPTR_0015s09330.1" /db_xref="TAIR:AT5G40390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5VQG4" /translation="MAPSITKNALDAMGLVYDGQLSTSITLEGSNFLANGEPILTEVP ANIVATPSPFCSADKAKSTVGCFVGFDVEEPKSRHVVPIGKLSGIRFMSIFRFKVWWT THWVGSSGKDVENDTQMMMLDKKESGRPYVLLLPLLEGPFRASLQPGVGDQNVDICVE SGSTQVCGSSFRSCLYMHVGDDPYSLVKEAMKVARVHLGTFRLLDEKAPPGIVDKFGW CTWDAFYLKVHPKGVWEGVKGLVEGGCPPGMVLIDDGWQSICHDDDPISDQEGINRTS AGEQMPCRLIKFEENYKFREYESTKSPIKKGMGAFIKDIKEEFKTIEHVYVWHALCGY WGGIRPNVPGMPPAEVITPKLSQGLLMTMEDLAVDKIVNNGVGLVPPELVHKMYEGLH SYLESLGIDGVKVDVIHLLEMLAEEFGGRVDLAKAYYKALTASVRRHFKGNGVIASMQ HCNDFFFLGTETISLGRVGDDFWCTDPLGDPNGTYWLQGCHMVHCAYNSLWMGNFIQP DWDMFQSTHQCAEFHAASRAMSGGPIYVSDSVGQHNFKVLKSLVLPDGSILRCQHYAL PTRDCLFEDPLHDGKTMLKIWNLNKYTGVLGLFNCQGGGWSRESRRNESASQFSSMVG CFASPKDIEWSHGKNPISVKSVSIFAVYMLQKRKLKLMKQSDKVEVSLEPFDYELLTV SPVTVLPRKRIQFAPIGLVNMLNSGGAIQSMVFDDGEGLVRIGVKGSGEMRVFASDKP STCKIDGVPVKFDYDEQMVTIHVPWPNSSSLSNVEYLF" gene 1578478..1582354 /locus_tag="TCM_012211" /note="dbxref CacaoGD:Thecc1EG012211" mRNA join(1578478..1578796,1578965..1579073,1579185..1579296, 1579525..1579582,1579674..1579792,1579907..1579999, 1580233..1580505,1580680..1580903,1581393..1581608, 1581770..1582354) /locus_tag="TCM_012211" /product="D111/G-patch domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g36010.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007682001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00124t00004" mRNA join(1578478..1578796,1578965..1579073,1579185..1579296, 1579525..1579582,1579674..1579792,1579907..1579999, 1580233..1580505,1580680..1580903,1581393..1581608, 1581770..1581884,1582130..1582354) /locus_tag="TCM_012211" /product="D111/G-patch domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g36010.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007682001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b011787t1a2; alternateUTRof:Thecc1EG012211t1; inference alignment:Newbler:10:TSA:cgbaB_g00124t00004" mRNA join(1578478..1578796,1578965..1579073,1579185..1579296, 1579525..1579582,1579674..1579765,1579907..1579999, 1580233..1580505,1580680..1580903,1581393..1581608, 1581770..1581884,1582130..1582354) /locus_tag="TCM_012211" /product="D111/G-patch domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g36010.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007682001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b011787t1a3; inference alignment:Newbler:10:TSA:cgbaB_g00124t00004" mRNA join(1578598..1578796,1578965..1579073,1579185..1579296, 1579522..1579582,1579674..1579765,1579907..1579999, 1580233..1580489,1581393..1581609,1581770..1581884, 1582130..1582334) /locus_tag="TCM_012211" /product="D111/G-patch domain-containing protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g36010.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007682001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g810t4; inference alignment:Newbler:10:TSA:cgbaB_g00124t00004" mRNA join(1578637..1578796,1578965..1579073,1579185..1579296, 1579525..1579582,1579674..1579765,1579907..1579999, 1580233..1580489,1581393..1581718) /locus_tag="TCM_012211" /product="D111/G-patch domain-containing protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g36010.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007682001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc538t14_C1; inference alignment:Newbler:10:TSA:cgbaB_g00124t00004" CDS join(1578702..1578796,1578965..1579073,1579185..1579296, 1579525..1579582,1579674..1579792,1579907..1579999, 1580233..1580505,1580680..1580903,1581393..1581608, 1581770..1581874) /locus_tag="TCM_012211" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="D111/G-patch domain-containing protein, putative isoform 1" /protein_id="EOY20866.1" /db_xref="Phytozome:GSVIVT01007682001" /db_xref="TAIR:AT4G34140.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHL9" /translation="MAGSEEPDSTELQNSDCSFLWDPQTRLYFHASSGFYHDPDAGWY YSSRDGLYYKFENGNYVLLDSCYKEGAVADKNGEEYCSSSQGNGIGAPAKIRNVGDES GSAGQTEGACNQVPENPQPPSEWLEDTLIDLYLSGYNAVNSAADATMSLGTDNSENSK FPSDGTDETYEIEEGEWIPEENHNLADSSEGVPYEGDTWDEENWRAQYGQVTQSGEEP VLEVPVVDLWDWVMMTGPRKDGKGQVARLIGRLVKRSAKVHPSMPSGGGLLKTAPICE VHLDLVRVRTGQVYKLRSPNPRYLASLPTYDSSDPTKDWGFPDLSVNKKVCHQFKSGQ KDKSEATGEKVLKDLPILSDQPSASIKKFQQRSHVYRDRAAERRTLHGGFGLGPGQKN VAIGHDSDPTYAEDAKAEALNMSFGAGSYARRILEGMGWKEGEALGSTTKGLTEPLQP IGNIGSAGLGWPQTRRC" CDS join(1578702..1578796,1578965..1579073,1579185..1579296, 1579525..1579582,1579674..1579792,1579907..1579999, 1580233..1580505,1580680..1580903,1581393..1581608, 1581770..1581874) /locus_tag="TCM_012211" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="D111/G-patch domain-containing protein, putative isoform 1" /protein_id="EOY20867.1" /db_xref="Phytozome:GSVIVT01007682001" /db_xref="TAIR:AT4G34140.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHL9" /translation="MAGSEEPDSTELQNSDCSFLWDPQTRLYFHASSGFYHDPDAGWY YSSRDGLYYKFENGNYVLLDSCYKEGAVADKNGEEYCSSSQGNGIGAPAKIRNVGDES GSAGQTEGACNQVPENPQPPSEWLEDTLIDLYLSGYNAVNSAADATMSLGTDNSENSK FPSDGTDETYEIEEGEWIPEENHNLADSSEGVPYEGDTWDEENWRAQYGQVTQSGEEP VLEVPVVDLWDWVMMTGPRKDGKGQVARLIGRLVKRSAKVHPSMPSGGGLLKTAPICE VHLDLVRVRTGQVYKLRSPNPRYLASLPTYDSSDPTKDWGFPDLSVNKKVCHQFKSGQ KDKSEATGEKVLKDLPILSDQPSASIKKFQQRSHVYRDRAAERRTLHGGFGLGPGQKN VAIGHDSDPTYAEDAKAEALNMSFGAGSYARRILEGMGWKEGEALGSTTKGLTEPLQP IGNIGSAGLGWPQTRRC" CDS join(1578702..1578796,1578965..1579073,1579185..1579296, 1579525..1579582,1579674..1579765,1579907..1579999, 1580233..1580505,1580680..1580903,1581393..1581608, 1581770..1581874) /locus_tag="TCM_012211" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="D111/G-patch domain-containing protein, putative isoform 3" /protein_id="EOY20868.1" /db_xref="Phytozome:GSVIVT01007682001" /db_xref="TAIR:AT4G34140.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHL9" /translation="MAGSEEPDSTELQNSDCSFLWDPQTRLYFHASSGFYHDPDAGWY YSSRDGLYYKFENGNYVLLDSCYKEGAVADKNGEEYCSSSQGNGIGAPAKIRNVGDES GSAGQTEGACNQVPENPQPPSEWLEDTLIDLYLSGYNAVNSAADATMSLGTDNRTDET YEIEEGEWIPEENHNLADSSEGVPYEGDTWDEENWRAQYGQVTQSGEEPVLEVPVVDL WDWVMMTGPRKDGKGQVARLIGRLVKRSAKVHPSMPSGGGLLKTAPICEVHLDLVRVR TGQVYKLRSPNPRYLASLPTYDSSDPTKDWGFPDLSVNKKVCHQFKSGQKDKSEATGE KVLKDLPILSDQPSASIKKFQQRSHVYRDRAAERRTLHGGFGLGPGQKNVAIGHDSDP TYAEDAKAEALNMSFGAGSYARRILEGMGWKEGEALGSTTKGLTEPLQPIGNIGSAGL GWPQTRRC" CDS join(1578702..1578796,1578965..1579073,1579185..1579296, 1579522..1579582,1579674..1579765,1579907..1579999, 1580233..1580489,1581393..1581609,1581770..1581786) /locus_tag="TCM_012211" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="D111/G-patch domain-containing protein, putative isoform 4" /protein_id="EOY20869.1" /db_xref="Phytozome:GSVIVT01007682001" /db_xref="TAIR:AT4G34140.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHL9" /translation="MAGSEEPDSTELQNSDCSFLWDPQTRLYFHASSGFYHDPDAGWY YSSRDGLYYKFENGNYVLLDSCYKEGAVADKNGEEYCSSSQGNGIGAPAKIRNVGDES GSAAGQTEGACNQVPENPQPPSEWLEDTLIDLYLSGYNAVNSAADATMSLGTDNRTDE TYEIEEGEWIPEENHNLADSSEGVPYEGDTWDEENWRAQYGQVTQSGEEPVLEVPVVD LWDWVMMTGPRKDGKGQVARLIGRLVKRSAKVHPSMPSGGGLLKTAPICEVHLDLKFQ QRSHVYRDRAAERRTLHGGFGLGPGQKNVAIGHDSDPTYAEDAKAEALNMSFGAGSYA RRILEGMGWKEGRGTW" CDS join(1578702..1578796,1578965..1579073,1579185..1579296, 1579525..1579582,1579674..1579765,1579907..1579999, 1580233..1580489,1581393..1581623) /locus_tag="TCM_012211" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="D111/G-patch domain-containing protein, putative isoform 5" /protein_id="EOY20870.1" /db_xref="Phytozome:GSVIVT01007682001" /db_xref="TAIR:AT4G34140.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHL9" /translation="MAGSEEPDSTELQNSDCSFLWDPQTRLYFHASSGFYHDPDAGWY YSSRDGLYYKFENGNYVLLDSCYKEGAVADKNGEEYCSSSQGNGIGAPAKIRNVGDES GSAGQTEGACNQVPENPQPPSEWLEDTLIDLYLSGYNAVNSAADATMSLGTDNRTDET YEIEEGEWIPEENHNLADSSEGVPYEGDTWDEENWRAQYGQVTQSGEEPVLEVPVVDL WDWVMMTGPRKDGKGQVARLIGRLVKRSAKVHPSMPSGGGLLKTAPICEVHLDLKFQQ RSHVYRDRAAERRTLHGGFGLGPGQKNVAIGHDSDPTYAEDAKAEALNMSFGAGSYAR RILEGMGWKEVSWV" mobile_element complement(1582287..1582375) /note="source:scaffold_3_CACTA_0377 2106 2192" /mobile_element_type="transposon:TIR/CACTA" gene complement(1583010..1589714) /locus_tag="TCM_012212" /note="dbxref CacaoGD:Thecc1EG012212" mRNA complement(join(1583010..1583217,1584268..1584323, 1584495..1584564,1584842..1585003,1585528..1585581, 1586554..1586601,1587290..1587367,1587462..1587526, 1587681..1587768,1588314..1588350,1588488..1588555, 1588987..1589048,1589151..1589202,1589310..1589714)) /locus_tag="TCM_012212" /product="FKBP12-interacting protein of 37 kDa" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g09410.1" /inference="similar to AA sequence:ricco:30147.m013901" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03949t00001" CDS complement(join(1583038..1583217,1584268..1584323, 1584495..1584564,1584842..1585003,1585528..1585581, 1586554..1586601,1587290..1587367,1587462..1587526, 1587681..1587768,1588314..1588350,1588488..1588555, 1588987..1589048,1589151..1589202,1589310..1589336)) /locus_tag="TCM_012212" /note="dbxref ricco:30147.m013901" /codon_start=1 /product="FKBP12-interacting protein of 37 kDa" /protein_id="EOY20871.1" /db_xref="TAIR:AT3G54170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSZ8" /translation="MASHAHLDDDDEFGGDFPGSHSTRHSGNKRSFGDLEDDEDDIFG SKKGNSKVEETAPGVATGMILSLRESLQNCKDALATCQMELEAAKSEIQKWHFAFRNE PFIPAGTTPEPKLVLNYLQTLKSSEEALKEQLEKAKKKEAAFIVTFAKREQEIAELKS AVRDLKVQLKPPSMQARRLLLDPAIHEEFTRLKNLVEEKDKKVKELQENIAAVSFTPQ SKMGKMLMAKCRTLQEENEEIGTQAEEGKMHELGMKLALQKTQNAELRSQFEALYKQM EGLTNDAERSNETVYILQEKLEEKDNEIKRLKLELQQKTLMEEENKTDIAIDTSKVKD EMVTDETGNREQVD" gene 1593886..1597480 /locus_tag="TCM_012213" /note="dbxref CacaoGD:Thecc1EG012213" mRNA join(1593886..1594589,1595321..1595552,1595691..1595770, 1596172..1596325,1596502..1596580,1596900..1596987, 1597098..1597144,1597274..1597480) /locus_tag="TCM_012213" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene31784" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016543t1" /inference="similar to AA sequence:ricco:30147.m013902" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06461t00001" CDS join(1594376..1594589,1595321..1595552,1595691..1595770, 1596172..1596325,1596502..1596580,1596900..1596987, 1597098..1597144,1597274..1597459) /locus_tag="TCM_012213" /note="dbxref ricco:30147.m013902; paralog of Thecc1EG016543t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY20872.1" /db_xref="TAIR:AT5G50130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3G6" /translation="MCTIYFLLLAILLPCCFEILSLSCCTLMKETLRYLAGIAGPSGY GSKSTAEQVADNCSCWVDPHHLTAIITGATSGIGAETARVLVRRGVRVVIPARDLKKA VELKEGILKENPNAEIILSEIDLSSLASVKRFCAEFLALGQPLNILINNAGIFSQNLE FSEDKIEMTFATNYLGHYLLTELLLEKMIETAEQTGIQGRIINLSSVIHSWVKRDSFC FSQMLNPKKYNGTRAYAQSKLANILHAKEIARQLKAKNSKVTINAVHPGIVKTGIIRA HKGFITDSLFFIASKLLKSTTQGASTSCYVALSPQAEGISGQYFADCNESNCSALASD ESVAQRLCRQTRALIHRRLQHQTPS" mobile_element complement(1596382..1596469) /note="source:CACAO_M_E14074_F143_scaffold_3 1241 1324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1596409..1596497) /note="source:CACAO_Again_on_E5_scaffold_1 5041 5135" /mobile_element_type="transposon:TIR/hAT" mobile_element 1597917..1598049 /note="source:CACAO_on_E48_scaffold_6 2414 2530" /mobile_element_type="transposon:TIR/hAT" gene complement(1598099..1601892) /locus_tag="TCM_012214" /note="dbxref CacaoGD:Thecc1EG012214" mRNA complement(join(1598099..1598710,1599348..1599637, 1599829..1599951,1600035..1600124,1600212..1600325, 1601094..1601240,1601382..1601447,1601581..1601892)) /locus_tag="TCM_012214" /product="Kinetochore protein spc25, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09250.1" /inference="similar to AA sequence:ricco:30147.m013903" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06518t00001" CDS complement(join(1598699..1598710,1599348..1599637, 1599829..1599951,1600035..1600124,1600212..1600325, 1601094..1601240,1601382..1601447,1601581..1601749)) /locus_tag="TCM_012214" /note="dbxref ricco:30147.m013903" /codon_start=1 /product="Kinetochore protein spc25, putative" /protein_id="EOY20873.1" /db_xref="TAIR:AT3G48210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHM3" /translation="MESETEQSPRTKMEFLRTICEREVPIQQQKIDSFTASFPTSLHS IKALAQDTAQNHVELAKMKANLRESEDELVKVLAVKTRREAKQMATRDSISALKARIE ELKRTIQVQRAGRDEYAAIISQQSLALATTEEEAKHDIEENGEIQEAISWYNQVLGFQ IEGGHGVKFTFNDINIKNPKQEYSFTIRHANDTYSLLDCDPQLDGIKELINELNRTNG LFKFVRIMREKFQEAVALGLQPQYRSLHQDSSTISMSGPALSVSTDISESSAKKNEHH IPLREVNRQFKKVNHGSKSPAKINKNQIHDGEVNRHPMKVAKSDILSPVVRRSPRLKA KK" mobile_element 1603107..1603308 /note="source:scaffold_7_CACTA_0795 2860 3034" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1603311..1603932) /note="source:scaffold_1_CACTA_0008 921 1528" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1604324..1604835) /note="source:CACAO_on_E27_scaffold_1 63 587" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(1604788..1605167) /note="source:MITE_PIF_Tourist_7 1 404" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(1605100..1605178) /note="source:CACAO_Mariner_E11_scaffold_1 987 1066" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(1605168..1605318) /note="source:CACAO_on_E545_scaffold_5 1 149" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 1609210..1609545 /note="source:scaffold_7_CACTA_0795 2881 3298" /mobile_element_type="transposon:TIR/CACTA" gene 1611822..1618115 /locus_tag="TCM_012215" /note="dbxref CacaoGD:Thecc1EG012215" mRNA join(1611822..1615360,1616004..1617460,1617553..1617672, 1617741..1618115) /locus_tag="TCM_012215" /product="Receptor protein kinase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030576t2" /inference="similar to AA sequence:ricco:30147.m013904" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1053t3" CDS join(1612513..1615360,1616004..1616503) /locus_tag="TCM_012215" /note="dbxref ricco:30147.m013904; paralog of Thecc1EG030576t2" /codon_start=1 /product="Receptor protein kinase, putative" /protein_id="EOY20874.1" /db_xref="TAIR:AT5G56040.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAX9" /translation="MPVNPWTLFPSLFLSFSFLIPFLCTAFAVNQQGEALLSWKRSFN GSPEALSNWDAKDETPCKWFGIVCNFNNVVVELELRYVDLIGEVPSNFTSLSTLNKLV LSGTNLTGSIPKEISTLTQLSHLDMSENVLTGEIPSELCSLLTLEQLYLNSNQLKGSI PIQIGNLTSLKWLILYDNQLSGEIPSTIGNLKNLEVIRAGGNKNLEGPLPQAIGNCTS LVMLGLAETSISGFLPPTLGLLKKLQTIAIYTAYLSGQIPPELGDCTELQNIYLYENS LAGSIPRSLGNLRNLQSLLLWQNNLVGIIPPELGNCNKLLVIDASMNSLTGSIPQSFG NLKSLQELQLSVNQISGEIPSTLGNCRQMTHIELDNNQITGTIPSELGNLTNLTLLFL WQNKLEGNIPVSISNCQNLEAVDLSQNSLTGPIPNEIFQLKKLNKLLLLSNNLSGDIP PEIGNCSSLIRFRASDNKITGSIPIQIGNLQNLNFLDLGSNRLTGFIPEEISGCQNLT FLDLHSNSVGGNMPVSLSKLVSLQFVDFSDNLIEGTLSPSLGSLSSLTKLVLGNNRFS GSIPSQLGSCSKLQLLDLSSNQFMGNIPASLGKIPALEIALNLSWNQLTGKIPEEFTA LDKLGILDISHNQLVGDLQNLAGLQNLVVLNVSHNNFTGRVPDTPFFSKLPLSVLSGN PSLCVSGNQCSAAEYGGSSSKRTAARVAMVVLLCTACGLLLAALYIIISSKKRSSGPH HDCDIDGDADLEMGPPWELTLYQKLDLSIADVARSLMAGNIIGRGRTGVVYKVTIPSG LTIAVKRFRSSDKASAGSFSSEIATLARIRHRNIVRLLGWGANRKTKLLFYDYMANGT LGALLHEGCGRELLDWDIRFKIALGLAEGLAYLHHDCVPAILHRDVKAHNILLGDRYE PCLADFGLARLVEDENGGSFSANPEFAGSYGYMAPEYACMLKITEKSDVYSYGVVLLE IITGKKPVDPSFPDGQHVIQWVRDHLKNKKDPVEILDPKLQGHPDTQIQEMLQALGIS LLCTSNRAEDRPIMKDVAALLKEIRQEPMVGTEAHKPTSNSSKKIETTPSYSSSSVTP AQLLLQGSSQSSLAYSSSSANYIPRSQ" gene complement(1618886..1620801) /locus_tag="TCM_012216" /note="dbxref CacaoGD:Thecc1EG012216" mRNA complement(join(1618886..1619018,1619227..1619518, 1619654..1619881,1619969..1620133,1620691..1620801)) /locus_tag="TCM_012216" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13508t00001" CDS complement(1619283..1619456) /locus_tag="TCM_012216" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20875.1" /translation="MRTAEFKVIDTDPGEYCVVVSDTIVNREGEPITAVTNMLQRKYC SLVNIMLLHQILL" gene 1621021..1626009 /locus_tag="TCM_012217" /note="dbxref CacaoGD:Thecc1EG012217" mRNA join(1621021..1621277,1621430..1621588,1622409..1622571, 1622722..1622839,1623642..1623711,1623804..1623884, 1624267..1624323,1624425..1624536,1624934..>1625064) /locus_tag="TCM_012217" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m013907" /inference="similar to AA sequence:ricco:30147.m013907" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc758t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g890t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8076t2" mRNA join(1621028..1621277,1621430..1621588,1622409..1622571, 1622722..1622876,1622968..1623122,1623642..1623711, 1623804..1623884,1624267..1624323,1624425..1624536, 1624934..1626009) /locus_tag="TCM_012217" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013907" /inference="similar to AA sequence:Phytozome:GSVIVT01007692001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g890t1" CDS join(1621068..1621277,1621430..1621588,1622409..1622571, 1622722..1622876,1622968..1623122,1623642..1623711, 1623804..1623884,1624267..1624323,1624425..1624536, 1624934..1625421) /locus_tag="TCM_012217" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein, putative isoform 1" /protein_id="EOY20876.1" /db_xref="Phytozome:GSVIVT01007692001" /db_xref="TAIR:AT5G63080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHM6" /translation="MGIKIGGQIEKVNGRELSYSEFAERYLAKNQPVVLTGLMDDWGA CKDWVSSNGQPNLHFFSTHFGKSKVQVADCGAREFTDQKRVEMSVLEFVNHWLQGSVE DLDGNGNGKSVLYLKDWHFVKEYPEYLAYKTPVFFTDDWLNFYLDNYRMHDDPDTNQE NNDICCSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLPPLQCHLLFDRH AQLLALCIIRQNYNNCFFGIYCYRRWNPREGQDAVEKPEKKKKEKARGGLGGAGVCPA LTLQRNMKSSVYNIFDDISETKFSGFKKAIWMECIQEQNEIIFVPSGWYHQVHNLEDT ISINHNWFNAYNLSWVWDLLLRDYKEAKEYIEDIKDICDNFEGLCQRNLAANTGMNFN DFFIFISRFSLANVVELYYIHNESKSKSSNRHWSDMVQHFAQNLASMRKIALKMKSEG GVQGNLGILDLRESLSDPKFLKLCSGLGRIYAVIHEQENWSCTMRKVLMAEFENYGSR VCSPEDLVKFIDYAVSKPSGNGTEQNTLLSVLYGAQPRQQN" CDS join(1621068..1621277,1621430..1621588,1622409..1622571, 1622722..1622839,1623642..1623711,1623804..1623884, 1624267..1624323,1624425..1624536,1624934..>1625064) /locus_tag="TCM_012217" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013907" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein isoform 2" /protein_id="EOY20877.1" /db_xref="TAIR:AT5G63080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHM6" /translation="MGIKIGGQIEKVNGRELSYSEFAERYLAKNQPVVLTGLMDDWGA CKDWVSSNGQPNLHFFSTHFGKSKVQVADCGAREFTDQKRVEMSVLEFVNHWLQGSVE DLDGNGNGKSVLYLKDWHFVKEYPEYLAYKTPVFFTDDWLNFYLDNYRMHDDPDTNQE NNDICCSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLPPLQCHLLFDRN MKSSVYNIFDDISETKFSGFKKAIWMECIQEQNEIIFVPSGWYHQVHNLEDTISINHN WFNAYNLSWVWDLLLRDYKEAKEYIEDIKDICDNFEGLCQRNLAANTGMNFNDFFIFI SRFSLANVVELYYIHNESKSKSSNRHWSDMVQH" gene 1626150..1627936 /locus_tag="TCM_012218" /note="dbxref CacaoGD:Thecc1EG012218" mRNA join(1626150..1626474,1626722..1626916,1627015..1627111, 1627476..1627640,1627725..1627936) /locus_tag="TCM_012218" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012164t1" /inference="similar to AA sequence:ricco:30147.m013879" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS join(1626824..1626916,1627015..1627111,1627476..1627640, 1627725..1627906) /locus_tag="TCM_012218" /note="dbxref ricco:30147.m013879; paralog of Thecc1EG012164t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20878.1" /translation="MQPVLDISLIFGTSKPDIVTVIQSSVVCVLKKSNQTFIFFARFD LSILQCTNTIIIGINLIESSCTTLVAINLRWRKLKKEIPLICLKAEKVKELSSIESKG AVEDHEVHFGGRSNFEDVFSKFLNETDGSNIGVLVCGPESLKRAVASLCQQKSQWFNI RDQKKKPYLSFHALNFTL" mobile_element complement(1628399..1628486) /note="source:scaffold_4_CACTA_0482 6126 6216" /mobile_element_type="transposon:TIR/CACTA" gene complement(1629500..1630812) /locus_tag="TCM_012219" /note="dbxref CacaoGD:Thecc1EG012219" mRNA complement(join(1629500..1630342,1630438..1630812)) /locus_tag="TCM_012219" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.18 coverage" CDS complement(join(1630145..1630342,1630438..1630455)) /locus_tag="TCM_012219" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20879.1" /translation="MLGPRKKQKPACTQQDPENIYVGDILVADDRIPVHPQEHSGRTR GGRRGMERDTWKTAVGLCGAMMEIPRK" mobile_element 1630871..1630973 /note="source:scaffold_4_CACTA_0482 6072 6175" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1632033..1632048 /note="source:CACAO_Mutator_E592_scaffold_3 3610 3669" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1632049..1632167) /note="source:scaffold_7_CACTA_0795 2863 2982" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1632168..1632187 /note="source:CACAO_Mutator_E592_scaffold_3 3670 3755" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1632340..1632523 /note="source:CACAO_Helitron_S_E29_scaffold_3 1679 1846" /mobile_element_type="transposon:Helitron" gene 1633947..1635589 /locus_tag="TCM_012220" /note="dbxref CacaoGD:Thecc1EG012220" mRNA join(1633947..1634348,1634452..1635301,1635406..1635589) /locus_tag="TCM_012220" /product="Octicosapeptide/Phox/Bem1p family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g18770.2" /inference="similar to AA sequence:Phytozome:POPTR_0012s08690.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g886t1" CDS join(1634012..1634348,1634452..1634861) /locus_tag="TCM_012220" /codon_start=1 /product="Octicosapeptide/Phox/Bem1p family protein" /protein_id="EOY20880.1" /db_xref="Phytozome:POPTR_0012s08690.1" /db_xref="TAIR:AT3G48240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3D9" /translation="MPLPYFSLFSDSKQIPFFSPNSLFPKSFKTELSLTFQPQNPNQR QRAKRGKPQEKERKKMVREIESGKKSSETVKFLCSYGGKILPRSSDGKLRYVGGLTRV LSVDRSISFTELMVKLVEFCGYSVTLRCQLPNGDLDTLISIKSDEDLRNIIEEYDGAA PSKIRAILSPPKSLKQISPPPSNTSSVNLSSPTSADSDSPLKAVFRRRSISPPRPMAY PVRASYYPCYLQQNPRVFFTAPHSNYYCRH" mobile_element complement(1636251..1636422) /note="source:scaffold_7_CACTA_0795 2860 3033" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1636422..1636590) /note="source:scaffold_4_CACTA_0483 981 1151" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1636486..1636606) /note="source:CACAO_Helitron_E81_scaffold_3 1808 1928" /mobile_element_type="transposon:Helitron" gene complement(1637086..1639012) /locus_tag="TCM_012221" /note="dbxref CacaoGD:Thecc1EG012221" mRNA complement(join(1637086..1637409,1638793..1639012)) /locus_tag="TCM_012221" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m013875" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400031694" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8074t1" CDS complement(join(1637254..1637409,1638793..1638936)) /locus_tag="TCM_012221" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20881.1" /db_xref="Phytozome:PGSC0003DMP400031694" /db_xref="TAIR:AT5G63135.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LC33" /translation="MLQFPAFMTQFPSTTRTIPTSFLLPSQWPQPHSEELLLAMEESN LEEKLNEIRDTNRNLVVIGKTTIDNDKEDDDNDADDDDADNAEESEAEEFEQETG" mobile_element 1639378..1639531 /note="source:INTACT383F_F354_scaffold_3-int 887 1029" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 1639511..1647672 /locus_tag="TCM_012222" /note="dbxref CacaoGD:Thecc1EG012222" mRNA join(1639511..1639695,1641279..1641637,1642682..1643367, 1643488..1643893,1644007..1644189,1644273..1644556, 1644758..1644874,1645499..1645761,1645884..1646058, 1646558..1646830,1646926..1647672) /locus_tag="TCM_012222" /product="C2 calcium/lipid-binding and GRAM domain containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007656001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030461t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007656001" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1991t1" CDS join(1641289..1641637,1642682..1643367,1643488..1643893, 1644007..1644189,1644273..1644556,1644758..1644874, 1645499..1645761,1645884..1646058,1646558..1646830, 1646926..1647132) /locus_tag="TCM_012222" /note="paralog of Thecc1EG030461t1" /codon_start=1 /product="C2 calcium/lipid-binding and GRAM domain containing protein, putative" /protein_id="EOY20882.1" /db_xref="Phytozome:GSVIVT01007656001" /db_xref="TAIR:AT5G50170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGS8" /translation="MRLYVYVLQAKDLGVEDIYVKLQVGKFKSKTRTLRNTLNPIWNE EFVFRVHDVGEQVVVSVFHHDDDSGFFNASKDLVGRVRIPVWLIADEDNQTLPPTWLS LEKPKTGRFINKDCGKILLTISLHGKGHDNSASHLLYAQSDIHHEDYKELESTCKLSH DIFSFKAPCLKITEGKHLVKAIAGRLEKLFNKNEETSRTDDSSSKLSTTLSDHEDSLE GLPSSCSLEEAIKLMQSKHNQHEMPENLEGGILLDRMYALSSYDLNKFFFAPDSQFRK DLAELQGTTEVQEGSWTWKSGYDFCLTRVVTYTKAATKLVKAVKATEEQIYIKANGQE FAILISASTPESTMMGSMIEGGVKQGLKESFDQFASLLAQKLKILDSMELSDRDHMLS TLQTEQQSDWELATEYFWNFTVVFTIFMFSFFIVHLILCDSSKVQGLEIDGLDLPDSF GELITGGILIILLQRAYNMVSRFMQARLQRGSDHGVKAQGDGWVLTVTLIEGVNLASL DSTGFSDPYVVFTCNGKTRTSSVKLQTRDPQWNEILEFDAMEEPPSVLDIEVFDFDGP FDQATSLGHAEINFLKHKSTELADLWVSLEGKLAQSSQSKLHLRIFLDNNKGVEAIKE YLTKMEKEVGKQLNLRSPHKNSTFQKLFGLPPEEFLISDFTCYLKRKLPVQGRLFLSA RIVGFYANLFGHKTKFFFLWEDIEYIQVLPPSLASLGSPSLVIILRKDRGLDARHGAK SQDEEGRLRFYFQSFVSFNVASRTIMALWRARTLTLDQKAQIAEEQQDQEERRITLEE VGSIRDVEITKMSKIYSAELPISVTSLMEIFDGGNLERKIMEKSACINYVMTIWEPVK PGVSERRISYKFNRHVSIFGGEVTCTQQKSPIANDEGWILNEVMVLHDVPFGDHFHVH FMYQIEKSGLAHNACKCDAYIGITWLKSTKFQLRITRNITEKFIHRLKEIFELVEREI LFATQQET" gene 1648107..1652673 /locus_tag="TCM_012223" /note="dbxref CacaoGD:Thecc1EG012223" mRNA join(1648107..1648362,1648471..1648580,1648899..1649017, 1649133..1649230,1649701..1649788,1649860..1649988, 1650079..1650172,1651246..1651370,1652044..1652141, 1652501..1652673) /locus_tag="TCM_012223" /product="Maintenance of killer 16 protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30710.m000037" /inference="similar to AA sequence:Phytozome:POPTR_0015s09530.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc901t7" mRNA join(1648117..1648362,1648471..1648580,1648899..1649017, 1649133..1649230,1649701..1649788,1649860..1650172, 1651246..1651370,1652044..>1652071) /locus_tag="TCM_012223" /product="Maintenance of killer 16 protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30710.m000037" /inference="similar to AA sequence:Phytozome:POPTR_0015s09530.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc903t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc901t7" CDS join(1648301..1648362,1648471..1648580,1648899..1649017, 1649133..1649230,1649701..1649788,1649860..1649988, 1650079..1650172,1651246..1651370,1652044..1652088) /locus_tag="TCM_012223" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Maintenance of killer 16 protein isoform 1" /protein_id="EOY20883.1" /db_xref="Phytozome:POPTR_0015s09530.2" /db_xref="TAIR:AT1G23280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTV4" /translation="MQHDEVIWQVIRHKHCSFMSKISTGIFCRNPYNVTGICNRSSCP LANSRYATIRDHDGVFYLYMKTIERAHKPNDLWERVKLPRNYEKALEVIGKHLMYWPK LLVHKIKQRLTKMTQMRIRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKT IEKELLARLENGIYDGIYNLPFNKFIETLDTDELQAEDENEEESEVEYVEGNFELEEE DDIEDMGMKNYHISNDEVADDDDEEEEVNAVKVRRRSKSEKDEPGKKLKKKPRIHVEV EHENGAERQKATF" CDS join(1648301..1648362,1648471..1648580,1648899..1649017, 1649133..1649230,1649701..1649788,1649860..1650172, 1651246..1651370,1652044..>1652070) /locus_tag="TCM_012223" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Maintenance of killer 16 protein isoform 2" /protein_id="EOY20884.1" /db_xref="Phytozome:POPTR_0015s09530.1" /db_xref="TAIR:AT1G23280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I4Q1" /translation="MQHDEVIWQVIRHKHCSFMSKISTGIFCRNPYNVTGICNRSSCP LANSRYATIRDHDGVFYLYMKTIERAHKPNDLWERVKLPRNYEKALEVIGKHLMYWPK LLVHKIKQRLTKMTQMRIRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKT IEKELLARLENGIYDGIYNLPFNKFIETLDTDELQAEDENEEVCLMEHVVLCIIQAFC IFLFPTDNYFGNKQESEVEYVEGNFELEEEDDIEDMGMKNYHISNDEVADDDDEEEEV NAVKVRRRSKSEKDEPGKKLKKKPRIHVEVEHENGAER" gene 1653067..1656311 /locus_tag="TCM_012224" /note="dbxref CacaoGD:Thecc1EG012224" mRNA join(1653067..1654022,1655123..1655289,1655371..1656311) /locus_tag="TCM_012224" /product="Plant intracellular Ras-group-related LRR protein 9" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010526t1" /inference="similar to AA sequence:ricco:30147.m013873" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc619t1" CDS join(1653135..1654022,1655123..1655289,1655371..1656019) /locus_tag="TCM_012224" /note="dbxref ricco:30147.m013873; paralog of Thecc1EG010526t1" /codon_start=1 /product="Plant intracellular Ras-group-related LRR protein 9" /protein_id="EOY20885.1" /db_xref="TAIR:AT3G11330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYG9" /translation="MGGNVIITPKQRITSKTPLHSERSVILQKGFSICQIPTPFFALE MDPNPKSYPLLSYVMSRLPSIGPSKLASAPDSDPGFDLEQPPPVPNPSSPSSSTNPPQ IVDQMPYLSHPNVLASMAHSVSDVAQTRSVLQTLGPRPDHEVVDMARSKLGEIEAGLS KSLEELVLSPRPVDVDRLEWRSHLADKEQQIRQQAEKEKSIYKSILQLDEMHEAYGKL LREAEDRLVKIYEKAGKVAENTEVVEEVNAEVVGVLEEAQGRGLERVDLSGKKLRFLP EAFGKISGLVLLNLSSNQLEVIPDSIAGLEKLEELNLSSNLLESLPDSIGLLQNLKIL DVSGNKLNALPDTICHCRSLIELDVSFNSLSYLPTNLGNELGNLQRLSFHLNKIRSLP TSVGEMRSLRFLDAHFNELCGLPDEIGRLTNLEILNLSSNFTDLRELPDTIGELTNLK ELDLSNNQIQALPDTFGRLDKLTKLNLEQNPIVIPPLEIVNQGVEAVKTFMAKRWLDI LVEEERKCMQEVNEQAQTGWLTRSTSWLKNYASVVSERVSSYLGAAEGSPRDPYLDEP R" mobile_element 1656195..1656238 /note="source:CACAO_M_E43428_F369_scaffold_5 1286 1329" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1656313..1659043) /locus_tag="TCM_012225" /note="dbxref CacaoGD:Thecc1EG012225" mRNA complement(join(1656313..1656563,1656652..1656738, 1656820..1656938,1657032..1657270,1657335..1657391, 1657694..1657780,1657919..1658087,1658163..1658463, 1658683..1659043)) /locus_tag="TCM_012225" /product="MATE efflux family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m013872" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012552t1" /inference="similar to AA sequence:ricco:30147.m013872" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2824t1" CDS complement(join(1656504..1656563,1656652..1656738, 1656820..1656938,1657032..1657270,1657335..1657391, 1657694..1657780,1657919..1658087,1658163..1658463, 1658683..1658970)) /locus_tag="TCM_012225" /note="dbxref ricco:30147.m013872; paralog of Thecc1EG012552t1" /codon_start=1 /product="MATE efflux family protein, putative" /protein_id="EOY20886.1" /db_xref="TAIR:AT5G52450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q651I6" /translation="MEHEDSIGILESPLIPVSGKVPGEGVSLSKGSCNKAEITSELKK QMRLAGSLVVVSFLQYSLLMISVMFVGHLGELSLASASMATSFAGVTGFSFMLGMGSA LETFCGQAYGARQYHMLGVHMQRAILVLTLVSVPISLIWAFTGQVFTILKQDTEISMR AGVYARWMIPSILPYGLLQCQLRFLQTQNNVLPLMISAALSSAISYWINVFILAIYIK FSPTCKKTWTGFSKDGRRNLVSFLKLGIPSALMVCLEFWSYEFLVLMSGLLPNPKLET SMMSVSLNISSVVYRIPFGFGSAVSVRVSNELGAGKPRAARLAVKIVTLLAVTEGLSL SIIAVALRGTLGYLYTNEEEVVRYLASVMPVLALSNFMDGIQGVLSGTARGCGWQKVG AYVNLGSYYLLGLPSAIILTFVFHFGGKGLWIGITCGSGLLAFLLLVIAMRTNWELEA GKARERVYDSSIPMDLPS" gene 1659135..1664576 /locus_tag="TCM_012226" /note="dbxref CacaoGD:Thecc1EG012226" mRNA join(1659135..1659419,1659761..1660057,1662512..1662726, 1664470..1664576) /locus_tag="TCM_012226" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m013870" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g15550t00001" CDS join(1659408..1659419,1659761..1660057,1662512..1662726, 1664470..1664533) /locus_tag="TCM_012226" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20887.1" /translation="MSCEHHATARRKITTHWIPPPLGSPKLNTDGAVKGKPGPAGIGG VLRDDQGFIKGTLSNHIDIEDSKVAEFQTIRGGIRFFLLSLEVESNSSNPISWAKDHS KRPPVNSLHADLASRGGFDGRDIAGCCCACRHGDLDHGAGVASLCRQAEARACSTGTV DHHRRCNLLPCPLLRSNPLRSMPNPQTPHLIRGKF" gene 1664520..1669519 /locus_tag="TCM_012227" /note="dbxref CacaoGD:Thecc1EG012227" mRNA join(1664520..1665027,1665617..1666743,1666830..1666953, 1667027..1667278,1667401..1667550,1667643..1668527, 1668629..1669519) /locus_tag="TCM_012227" /product="Ubiquitin-associated/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007647001" /inference="similar to AA sequence:frave:gene09946" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12730t00001" CDS join(1665004..1665027,1665617..1666743,1666830..1666953, 1667027..1667278,1667401..1667550,1667643..1668527, 1668629..1668727) /locus_tag="TCM_012227" /note="dbxref frave:gene09946" /codon_start=1 /product="Ubiquitin-associated/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 domain-containing protein, putative" /protein_id="EOY20888.1" /db_xref="TAIR:AT4G24690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEZ0" /translation="MESNLVIKVKYGDTLRRFNARIDDAEQLDLNMAGLRAKIIGLFN FPADAELTLTYIDEDGDVVTLVDDDDLRDVMRQRLKFLRIDVKLNNDKFGKLYTGSSG SSTPLRSPSVQPPLASFNTGAADVLKSVPEPLHDALSEVFSKLSFDVTSKAASASPVL GDLVECLSKMGQSYLSPVSQSGAGVNTNIPVGTSESPSAPSAPTDPNPSKGAGLRAVL PKCTADDSSCEASKEANNGNATRGVNVPAAVDLNVDPPADVNLTGCATMTSGSSASNV FACNDKKNTKESNSHNKGKSVSLDTSTPLVDTRKYYPISGMGPSNECPFSGVPVANDP VVPPFLYHPFSPSKRSSTHENPMFGTFHKGIQCDGCGVLPITGPRFKSKVTDDYDLCS ICFSKMGNEADYIRMDRPMHYRHPRCFRASNDHISRAGGPALLHILRNRAMKSARPKV DSRFILDVNVLDGTVMAPFTPFTKIWRMRNNGTLPWCGRMQLVWIGGDKFSDATSVEI EIPADGIPVDGELDIAVDFTAPQLPGRYVSYWRMASQTGMKFGQRVWVLIHVDASIKE SISDNFQGLNLNLPPESSGLRDSEIVDMNVDLVTELCNSNAGTEPLEPMVNDQPAKEH TVNNSLLLDSDVPMPVPKSSSVTYPIIDQGVFVPVHRPHTLSSPAAYPNIDQGVSSPA FPHIPSPSVSYPIIDLLEAAPAGPFQAPPPAICVQAPSPARPSQAPAPAICVQAPSPA GPSQARAPAICVQARSPAGSSQAPAPAICVQAPSPAISVQAPSPAISVQAQSQEDIEN ESVEQTLLKELEEMGFKQVDLNKEILRMNEYDLEKSVDDLCGVAEWDPILEELQEMGF CDAEMNKKLLKKNNGSIKGVVMDLLTGERA" gene 1670130..1673716 /locus_tag="TCM_012228" /note="dbxref CacaoGD:Thecc1EG012228" mRNA join(1670130..1670831,1671341..1671473,1671594..1671789, 1672748..1672872,1672962..1673120,1673239..1673716) /locus_tag="TCM_012228" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007646001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016983t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007646001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g924t2" CDS join(1670701..1670831,1671341..1671473,1671594..1671789, 1672748..1672872,1672962..1673120,1673239..1673553) /locus_tag="TCM_012228" /note="paralog of Thecc1EG016983t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY20889.1" /db_xref="Phytozome:GSVIVT01007646001" /db_xref="TAIR:AT5G50180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LT56" /translation="MESGSRFYSADEFKLDAKWLIDPKHLFVGPRIGEGAHAKVYEGK YRNQTVAIKILHKGETPEEITKREGRFAREVAMLSRVQHKNLVKFIGACKEPVMVIVT ELLLGGTLRKYLLNMRPRCLDMRIAIGFALDIARAMECLHSHGIIHRDLKPENLLLTA DHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYS FAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENLPEELAIILTSCWKEDPNTR PNFSQIIQMLLNYLSSICPPEPAIPPRIFASENAILPPESPGTSSLMGVRDDSGENPK ANMVKKRRSFFFCFDQCY" gene 1675435..1675996 /locus_tag="TCM_012229" /note="dbxref CacaoGD:Thecc1EG012229" mRNA 1675435..1675996 /locus_tag="TCM_012229" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09570.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09570.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16824t00001" CDS 1675465..1675857 /locus_tag="TCM_012229" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20890.1" /db_xref="Phytozome:POPTR_0015s09570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3E7" /translation="MRRSNGYTPRQNSGWDTTSQDYRAHLARMERQPTMIPGASQYPT VHKAFNNKYSSEEEVVEFKEEHHQKQRSPKSEKKVQIVEHVETIEETTDGNYEVHEET TVDVEAGGYIQQKHKAFELCKWKTFKVH" gene complement(1676855..1677791) /locus_tag="TCM_012230" /note="dbxref CacaoGD:Thecc1EG012230" mRNA complement(join(1676855..1677127,1677227..1677791)) /locus_tag="TCM_012230" /product="Mediator of RNA polymerase II transcription subunit 13, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09580.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09580.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1570t2_C2" CDS complement(1677347..1677790) /locus_tag="TCM_012230" /codon_start=1 /product="Mediator of RNA polymerase II transcription subunit 13, putative" /protein_id="EOY20891.1" /db_xref="Phytozome:POPTR_0015s09580.1" /translation="MKKKLEVEDDGVKDLEIIKAVAQAWHSQSGCTRPTNEFDAYRRN FRGQPSRFKLEAMSRPSSVKDNVATPCWDFGQSLWDSYEIVTVAKKLETGLVFDDPLT GLEEDMSRAQRKHKEGKNSLRNLLKRVTSRRFNEADIPRENRNGF" gene 1679193..1684027 /locus_tag="TCM_012231" /note="dbxref CacaoGD:Thecc1EG012231" mRNA join(1679193..1679479,1679565..1679628,1679820..1679926, 1680131..1680198,1680494..1680597,1680674..1680778, 1681428..1681517,1681612..1681687,1681804..1681873, 1681966..1682036,1682144..1682234,1682466..1682593, 1682693..1682821,1682945..1684027) /locus_tag="TCM_012231" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08830.1" /inference="similar to AA sequence:ricco:30147.m013864" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g942t5" mRNA join(1679215..1679479,1679564..1679628,1679820..1679926, 1680131..1680198,1680494..1680597,1680674..1680778, 1681428..1681517,1681612..1681687,1681803..1681857, 1681966..1682036,1682144..1682234,1682466..1682593, 1682693..1682821,1682945..1683413) /locus_tag="TCM_012231" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08830.1" /inference="similar to AA sequence:ricco:30147.m013864" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g942t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g942t5" CDS join(1679347..1679479,1679565..1679628,1679820..1679926, 1680131..1680198,1680494..1680597,1680674..1680778, 1681428..1681517,1681612..1681687,1681804..1681873, 1681966..1682036,1682144..1682234,1682466..1682593, 1682693..1682821,1682945..1683085) /locus_tag="TCM_012231" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013864" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY20892.1" /db_xref="TAIR:AT4G24710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1F9" /translation="MSSPMEISVPNPADVKTSEQNGVAPSPPPASPSPIVPHDKFHVS VEVCLKPSSTARPDDVRKAVEQMLEKRSLSYVDGPVPVPIDDPFLMENVQRIRICDTD EWVKNHDILLFWQVKPVVHVFQLSEEGPCEELSGDGQLSSFNDWILPAKEFDGMWESL IYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLS IRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVE SLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRA DIKAYIGPPTLQARYEILKSCLNELIRTGIISSSRDSSQSILPDYVTLKEKLSMPEIQ EVQTTLHLWKQLLEAAEACEGLSGRSLRKLPFLAHAALNNPYCCDPSKFLNTMIETAR RERSELPD" CDS join(1679459..1679479,1679564..1679628,1679820..1679926, 1680131..1680198,1680494..1680597,1680674..1680778, 1681428..1681517,1681612..1681687,1681803..1681857, 1681966..1682036,1682144..1682234,1682466..1682593, 1682693..1682821,1682945..1683085) /locus_tag="TCM_012231" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013864" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY20893.1" /db_xref="TAIR:AT4G24710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1F9" /translation="MTNFTFPVEVCLKPSSTARPDDVRKAVEQMLEKRSLSYVDGPVP VPIDDPFLMENVQRIRICDTDEWVKNHDILLFWQVKPVVHVFQLSEEGPCEELSGDGQ LSSFNDWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIIL LHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLGRKAFP KNSRNGRGRKQSDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILT TSNITAAIDIAFVDRADIKAYIGPPTLQARYEILKSCLNELIRTGIISSSRDSSQSIL PDYVTLKEKLSMPEIQEVQTTLHLWKQLLEAAEACEGLSGRSLRKLPFLAHAALNNPY CCDPSKFLNTMIETARRERSELPD" mobile_element 1687087..1687612 /note="source:CACAO_Again_on_E230_scaffold_10 338 861" /mobile_element_type="transposon:TIR/hAT" mobile_element 1687796..1688546 /note="source:CACAO_Again_on_E81_scaffold_3 462 1209" /mobile_element_type="transposon:TIR/hAT" mobile_element 1693290..1693328 /note="source:CACAO_M_E57660_F369_scaffold_9 6185 6222" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1696627..1701347 /locus_tag="TCM_012233" /note="dbxref CacaoGD:Thecc1EG012233" mRNA join(1696627..1696879,1698237..1698373,1698668..1698745, 1698850..1699082,1700477..1700917) /locus_tag="TCM_012233" /product="DEHYDRATION-INDUCED 19, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031587" /inference="similar to AA sequence:Phytozome:GSVIVT01007639001" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00355t00001_C2; alternateUTRof:Thecc1EG012233t7; inference alignment:Newbler:10:TSA:cgbaB_g00125t00008; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc826t5" mRNA join(1696628..1696879,1698237..1698373,1698668..1698745, 1698850..1699082,1700477..1700580,1700659..1700934) /locus_tag="TCM_012233" /product="DEHYDRATION-INDUCED 19, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031587" /inference="similar to AA sequence:Phytozome:GSVIVT01007639001" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00835t00001; inference alignment:Newbler:10:TSA:cgbaB_g00125t00008; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc826t5" mRNA join(1696628..1696897,1698237..1698373,1698668..1698745, 1698850..1699082,1700477..1700580,1700659..1700681) /locus_tag="TCM_012233" /product="DEHYDRATION-INDUCED 19, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031587" /inference="similar to AA sequence:Phytozome:GSVIVT01007639001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00125t00005; inference alignment:Newbler:10:TSA:cgbaB_g00125t00008; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc826t5" mRNA join(1696628..1696879,1698234..1698373,1698668..1698745, 1698850..1699082,1700477..1700580,1700659..1700681) /locus_tag="TCM_012233" /product="DEHYDRATION-INDUCED 19, putative isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031587" /inference="similar to AA sequence:Phytozome:GSVIVT01007639001" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00125t00006; inference alignment:Newbler:10:TSA:cgbaB_g00125t00008; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc826t5" mRNA join(1696632..1696879,1697681..1697740,1698237..1698373, 1698668..1698745,1698850..1699082,1700477..1700918) /locus_tag="TCM_012233" /product="DEHYDRATION-INDUCED 19, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031587" /inference="similar to AA sequence:Phytozome:GSVIVT01007639001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00588t00001; alternateUTRof:Thecc1EG012233t1; inference alignment:Newbler:10:TSA:cgbaB_g00125t00008; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc826t5" mRNA join(1696632..1696879,1697681..1697740,1698237..1698373, 1698668..1698745,1698850..1699082,1700477..1700580, 1700659..1700918) /locus_tag="TCM_012233" /product="DEHYDRATION-INDUCED 19, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031587" /inference="similar to AA sequence:Phytozome:GSVIVT01007639001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00588t00002; alternateUTRof:Thecc1EG012233t1; inference alignment:Newbler:10:TSA:cgbaB_g00125t00008; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc826t5" mRNA join(1696722..1696897,1698234..1698373,1698668..1698745, 1698850..1699082,1700477..1700917) /locus_tag="TCM_012233" /product="DEHYDRATION-INDUCED 19, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031587" /inference="similar to AA sequence:Phytozome:GSVIVT01007639001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00355t00003_C2; alternateUTRof:Thecc1EG012233t3; inference alignment:Newbler:10:TSA:cgbaB_g00125t00008; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc826t5" mRNA join(1696722..1696897,1698234..1698373,1698668..1698745, 1698850..1699082,1700477..1700580,1700659..1700917) /locus_tag="TCM_012233" /product="DEHYDRATION-INDUCED 19, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031587" /inference="similar to AA sequence:Phytozome:GSVIVT01007639001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00355t00004_C2; inference alignment:Newbler:10:TSA:cgbaB_g00125t00008; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc826t5" mRNA join(1696776..1696879,1697681..1697740,1698237..1698373, 1698668..1698745,1698850..1699082,1700477..1700580, 1700695..1700791,1700959..1701347) /locus_tag="TCM_012233" /product="DEHYDRATION-INDUCED 19, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031587" /inference="similar to AA sequence:Phytozome:GSVIVT01007639001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00125t00008" CDS join(1696801..1696897,1698234..1698373,1698668..1698745, 1698850..1699082,1700477..1700579) /locus_tag="TCM_012233" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DEHYDRATION-INDUCED 19, putative isoform 3" /protein_id="EOY20896.1" /db_xref="Phytozome:GSVIVT01007639001" /translation="MDVDLWPSKVHSSKHLSVVRAARLNSGTEFDYTDGHYDDFDGDE DTRACFPCPFCYVEIEIHALCNHLQEEHCFNLKNSVCPLCAANLGKDVIGHFIVQHAS SLKRRRKSQKSGCWPGTPATLSRELSLFIGSSTGDRDNAHESAPDLILSPFLCNAPVS DTKDILRDKCSDGETSVTSNLKRTEPPFLDKDHEQNTEERRQKAAFVLQLVMSTIF" CDS join(1696801..1696897,1698234..1698373,1698668..1698745, 1698850..1699082,1700477..1700579) /locus_tag="TCM_012233" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="DEHYDRATION-INDUCED 19, putative isoform 3" /protein_id="EOY20899.1" /db_xref="Phytozome:GSVIVT01007639001" /translation="MDVDLWPSKVHSSKHLSVVRAARLNSGTEFDYTDGHYDDFDGDE DTRACFPCPFCYVEIEIHALCNHLQEEHCFNLKNSVCPLCAANLGKDVIGHFIVQHAS SLKRRRKSQKSGCWPGTPATLSRELSLFIGSSTGDRDNAHESAPDLILSPFLCNAPVS DTKDILRDKCSDGETSVTSNLKRTEPPFLDKDHEQNTEERRQKAAFVLQLVMSTIF" CDS join(1696801..1696897,1698237..1698373,1698668..1698745, 1698850..1699082,1700477..1700579) /locus_tag="TCM_012233" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="DEHYDRATION-INDUCED 19, putative isoform 5" /protein_id="EOY20898.1" /db_xref="Phytozome:GSVIVT01007639001" /translation="MDVDLWPSKVHSSKHLSVVRAARLNSGTEFDYNGHYDDFDGDED TRACFPCPFCYVEIEIHALCNHLQEEHCFNLKNSVCPLCAANLGKDVIGHFIVQHASS LKRRRKSQKSGCWPGTPATLSRELSLFIGSSTGDRDNAHESAPDLILSPFLCNAPVSD TKDILRDKCSDGETSVTSNLKRTEPPFLDKDHEQNTEERRQKAAFVLQLVMSTIF" CDS join(1696801..1696879,1697681..1697740,1698237..1698373, 1698668..1698745,1698850..1699082,1700477..1700579) /locus_tag="TCM_012233" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DEHYDRATION-INDUCED 19, putative isoform 1" /protein_id="EOY20894.1" /db_xref="Phytozome:GSVIVT01007639001" /translation="MDVDLWPSKVHSSKHLSVVRAARLNSDECEDETEDGELDYESNC DEDGHYDDFDGDEDTRACFPCPFCYVEIEIHALCNHLQEEHCFNLKNSVCPLCAANLG KDVIGHFIVQHASSLKRRRKSQKSGCWPGTPATLSRELSLFIGSSTGDRDNAHESAPD LILSPFLCNAPVSDTKDILRDKCSDGETSVTSNLKRTEPPFLDKDHEQNTEERRQKAA FVLQLVMSTIF" CDS join(1696801..1696879,1697681..1697740,1698237..1698373, 1698668..1698745,1698850..1699082,1700477..1700579) /locus_tag="TCM_012233" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DEHYDRATION-INDUCED 19, putative isoform 1" /protein_id="EOY20895.1" /db_xref="Phytozome:GSVIVT01007639001" /translation="MDVDLWPSKVHSSKHLSVVRAARLNSDECEDETEDGELDYESNC DEDGHYDDFDGDEDTRACFPCPFCYVEIEIHALCNHLQEEHCFNLKNSVCPLCAANLG KDVIGHFIVQHASSLKRRRKSQKSGCWPGTPATLSRELSLFIGSSTGDRDNAHESAPD LILSPFLCNAPVSDTKDILRDKCSDGETSVTSNLKRTEPPFLDKDHEQNTEERRQKAA FVLQLVMSTIF" CDS join(1696801..1696879,1697681..1697740,1698237..1698373, 1698668..1698745,1698850..1699082,1700477..1700579) /locus_tag="TCM_012233" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="DEHYDRATION-INDUCED 19, putative isoform 1" /protein_id="EOY20897.1" /db_xref="Phytozome:GSVIVT01007639001" /translation="MDVDLWPSKVHSSKHLSVVRAARLNSDECEDETEDGELDYESNC DEDGHYDDFDGDEDTRACFPCPFCYVEIEIHALCNHLQEEHCFNLKNSVCPLCAANLG KDVIGHFIVQHASSLKRRRKSQKSGCWPGTPATLSRELSLFIGSSTGDRDNAHESAPD LILSPFLCNAPVSDTKDILRDKCSDGETSVTSNLKRTEPPFLDKDHEQNTEERRQKAA FVLQLVMSTIF" CDS join(1696801..1696879,1698234..1698373,1698668..1698745, 1698850..1699082,1700477..1700579) /locus_tag="TCM_012233" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="DEHYDRATION-INDUCED 19, putative isoform 8" /protein_id="EOY20901.1" /db_xref="Phytozome:GSVIVT01007639001" /translation="MDVDLWPSKVHSSKHLSVVRAARLNSADGHYDDFDGDEDTRACF PCPFCYVEIEIHALCNHLQEEHCFNLKNSVCPLCAANLGKDVIGHFIVQHASSLKRRR KSQKSGCWPGTPATLSRELSLFIGSSTGDRDNAHESAPDLILSPFLCNAPVSDTKDIL RDKCSDGETSVTSNLKRTEPPFLDKDHEQNTEERRQKAAFVLQLVMSTIF" CDS join(1696801..1696879,1698237..1698373,1698668..1698745, 1698850..1699082,1700477..1700579) /locus_tag="TCM_012233" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="DEHYDRATION-INDUCED 19, putative isoform 7" /protein_id="EOY20900.1" /db_xref="Phytozome:GSVIVT01007639001" /translation="MDVDLWPSKVHSSKHLSVVRAARLNSDGHYDDFDGDEDTRACFP CPFCYVEIEIHALCNHLQEEHCFNLKNSVCPLCAANLGKDVIGHFIVQHASSLKRRRK SQKSGCWPGTPATLSRELSLFIGSSTGDRDNAHESAPDLILSPFLCNAPVSDTKDILR DKCSDGETSVTSNLKRTEPPFLDKDHEQNTEERRQKAAFVLQLVMSTIF" CDS join(1696801..1696879,1698237..1698373,1698668..1698745, 1698850..1699082,1700477..1700579) /locus_tag="TCM_012233" /note="encoded by transcript variant 9; alternatively spliced" /codon_start=1 /product="DEHYDRATION-INDUCED 19, putative isoform 7" /protein_id="EOY20902.1" /db_xref="Phytozome:GSVIVT01007639001" /translation="MDVDLWPSKVHSSKHLSVVRAARLNSDGHYDDFDGDEDTRACFP CPFCYVEIEIHALCNHLQEEHCFNLKNSVCPLCAANLGKDVIGHFIVQHASSLKRRRK SQKSGCWPGTPATLSRELSLFIGSSTGDRDNAHESAPDLILSPFLCNAPVSDTKDILR DKCSDGETSVTSNLKRTEPPFLDKDHEQNTEERRQKAAFVLQLVMSTIF" misc_feature 1699407..1700580 /locus_tag="TCM_012233" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031587" /note="Gene fragment of Thecc1EG012233t1; dbxref gnl|CacaoGD|Thecc1EG012233t1; quality class is mediumpartial-partof is thecc1eg012233t1, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1912t1; dbxref CacaoGD:Thecc1EG012235t1" mobile_element 1701378..1701675 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17250 17579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1701478..1701892 /note="source:scaffold_1_CACTA_0008 1083 1531" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1702398..1702434) /note="source:CACAO_MITE33_scaffold_2 171 207" /mobile_element_type="transposon:TIR/MITE" gene complement(1702875..1705954) /locus_tag="TCM_012236" /note="dbxref CacaoGD:Thecc1EG012236" mRNA complement(join(1702875..1703124,1703696..1705954)) /locus_tag="TCM_012236" /product="RAB GTPase E1B" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004458t1" /inference="similar to AA sequence:Phytozome:Glyma05g02670.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1165t1" CDS complement(1704153..1705607) /locus_tag="TCM_012236" /note="paralog of Thecc1EG004458t1" /codon_start=1 /product="RAB GTPase E1B" /protein_id="EOY20903.1" /db_xref="Phytozome:Glyma05g02670.1" /db_xref="TAIR:AT4G20360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P17745" /translation="MAISSTAAAAATPSKLRYPYASPLSTHSATSTASFSAKSTKLTP THLSSSFLPPFLATTATSTVIRRRGGALTVKAARGKFERKKPHVNIGTIGHVDHGKTT LTAALTMALAAMGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD EELLQLVELEVRELLSSYEFPGDDVPIIAGSALLALEALMANPSVKRGENPWVDKIYE LMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKTAETVDIVGLR ETRNVTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFSA IVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVASIMNDKDEESKMVMPGDRVKMV VELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE" gene 1707729..1713654 /locus_tag="TCM_012237" /note="dbxref CacaoGD:Thecc1EG012237" mRNA join(1707729..1708118,1708226..1708409,1708557..1708680, 1708802..1709142,1709474..1710767,1712692..1712891, 1713284..1713654) /locus_tag="TCM_012237" /product="C3HC zinc finger-like, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009881" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01146t00002" mRNA join(1707927..1708118,1708226..1708409,1708557..1708680, 1708802..1709142,1709474..1710293,1710480..1710767, 1712692..1712891,1713284..1713654) /locus_tag="TCM_012237" /product="C3HC zinc finger-like, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009881" /inference="similar to AA sequence:Phytozome:GSVIVT01008221001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01146t00001; inference alignment:Newbler:10:TSA:cgbaB_g01146t00002" mRNA join(1707927..1708118,1708226..1708409,1708557..1708680, 1708802..1709142,1709474..1710293,1710480..1710556, 1710653..1710767,1712692..1712891,1713284..1713654) /locus_tag="TCM_012237" /product="C3HC zinc finger-like, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009881" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01146t00002; inference alignment:Newbler:10:TSA:cgbaB_g01146t00002" CDS join(1708036..1708118,1708226..1708409,1708557..1708680, 1708802..1709142,1709474..1710767,1712692..1712891, 1713284..1713367) /locus_tag="TCM_012237" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="C3HC zinc finger-like, putative isoform 1" /protein_id="EOY20904.1" /translation="MAQNSQERFHSIMNKIFHAPKPTPSSSSSLGGQSLRGKKRPNPS SALALEEPQHCLVTAEAPLCRPWDRGDLVRRLSTFKSMTWFAKPKVVSAVNCARRGWV NVDMDIIACESCGARLLFSTPPSWTQQQVEKVALVFSLKLDSGHKLLCPWINIACEER LAEFPPIMPADLVEKFKERSCSLCQLLALPVISSSAIEFMKSPQLEEFLRQPFMLDYQ KDSAEFSQSETIESGSDVDSTNMYYQAQKLISLCGWEPRSLPYVVECKDGPNHVVKDA DILNLSQGVDNGRNPSLSIHSIDEHENLEANKESENSCRLQYDPKSVVLDCRLCGASV GLWTFSTVQQPVEFFRVVGYAEVSPEVHDSGHESNVGERVVAVASNVGSSSMEQSSNL KLTIAGGPPPTRQNIKATISLPVIGQSLRARLLYHPEFREQIHINQEDTRPEANCNMI QGEEGQVVPLEDMRTSNKEKDDQVNCNSTSNDQSPCSNHDSARDDIFRNLMPLEGTGL TAEETYPDNGMYDSNMRGQIESFQNVAQGSYESNELPQNVSGHLAIIGSGTLQVGESS VMTQGANVSLGNAGTKDNDSSVMITSEKCHPEQIAETDKVCNKEISLSNHQESTCAAS GLEADVNIDGTYKMNSTEDKTCSDAPNANSQEGVIAGRQTAQNNKVLACAKGKDLKQL CMDKITEFDPIRQHRHFCPWIASAGSSTPGWKQTLSALLGGKNFPHSSPTCSPSSASL IKVDDPIASVRKLFASPIAKRPKNTHESS" CDS join(1708036..1708118,1708226..1708409,1708557..1708680, 1708802..1709142,1709474..1710293,1710480..1710767, 1712692..1712891,1713284..1713367) /locus_tag="TCM_012237" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="C3HC zinc finger-like, putative isoform 3" /protein_id="EOY20906.1" /db_xref="Phytozome:GSVIVT01008221001" /translation="MAQNSQERFHSIMNKIFHAPKPTPSSSSSLGGQSLRGKKRPNPS SALALEEPQHCLVTAEAPLCRPWDRGDLVRRLSTFKSMTWFAKPKVVSAVNCARRGWV NVDMDIIACESCGARLLFSTPPSWTQQQVEKVALVFSLKLDSGHKLLCPWINIACEER LAEFPPIMPADLVEKFKERSCSLCQLLALPVISSSAIEFMKSPQLEEFLRQPFMLDYQ KDSAEFSQSETIESGSDVDSTNMYYQAQKLISLCGWEPRSLPYVVECKDGPNHVVKDA DILNLSQGVDNGRNPSLSIHSIDEHENLEANKESENSCRLQYDPKSVVLDCRLCGASV GLWTFSTVQQPVEFFRVVGYAEVSPEVHDSGHESNVGERVVAVASNVGSSSMEQSSNL KLTIAGGPPPTRQNIKATISLPVIGQSLRARLLYHPEFREQIHINQEDTRPEANCNMI QGEEGQVVPLEDMRTSNKEKDDQVNCNSTSNDQSPCSNHDSARDDIFRNLMPLEGTGL TAEETYPDNGTKDNDSSVMITSEKCHPEQIAETDKVCNKEISLSNHQESTCAASGLEA DVNIDGTYKMNSTEDKTCSDAPNANSQEGVIAGRQTAQNNKVLACAKGKDLKQLCMDK ITEFDPIRQHRHFCPWIASAGSSTPGWKQTLSALLGGKNFPHSSPTCSPSSASLIKVD DPIASVRKLFASPIAKRPKNTHESS" CDS join(1708036..1708118,1708226..1708409,1708557..1708680, 1708802..1709142,1709474..1710293,1710480..1710556, 1710653..1710767,1712692..1712891,1713284..1713367) /locus_tag="TCM_012237" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="C3HC zinc finger-like, putative isoform 2" /protein_id="EOY20905.1" /db_xref="TAIR:AT1G48950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RE55" /translation="MAQNSQERFHSIMNKIFHAPKPTPSSSSSLGGQSLRGKKRPNPS SALALEEPQHCLVTAEAPLCRPWDRGDLVRRLSTFKSMTWFAKPKVVSAVNCARRGWV NVDMDIIACESCGARLLFSTPPSWTQQQVEKVALVFSLKLDSGHKLLCPWINIACEER LAEFPPIMPADLVEKFKERSCSLCQLLALPVISSSAIEFMKSPQLEEFLRQPFMLDYQ KDSAEFSQSETIESGSDVDSTNMYYQAQKLISLCGWEPRSLPYVVECKDGPNHVVKDA DILNLSQGVDNGRNPSLSIHSIDEHENLEANKESENSCRLQYDPKSVVLDCRLCGASV GLWTFSTVQQPVEFFRVVGYAEVSPEVHDSGHESNVGERVVAVASNVGSSSMEQSSNL KLTIAGGPPPTRQNIKATISLPVIGQSLRARLLYHPEFREQIHINQEDTRPEANCNMI QGEEGQVVPLEDMRTSNKEKDDQVNCNSTSNDQSPCSNHDSARDDIFRNLMPLEGTGL TAEETYPDNGTKDNDSSVMITSEKCHPEQIAETDKMNSTEDKTCSDAPNANSQEGVIA GRQTAQNNKVLACAKGKDLKQLCMDKITEFDPIRQHRHFCPWIASAGSSTPGWKQTLS ALLGGKNFPHSSPTCSPSSASLIKVDDPIASVRKLFASPIAKRPKNTHESS" mobile_element 1712420..1712496 /note="source:scaffold_1_CACTA_0029 7153 7229" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1712430..1712504 /note="source:CACAO_M_E69780_F2_scaffold_9 1586 1660" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1713284..1716587) /locus_tag="TCM_012238" /note="dbxref CacaoGD:Thecc1EG012238" mRNA complement(join(1713284..1713853,1714331..1715297)) /locus_tag="TCM_012238" /product="Cyclophilin peptidyl-prolyl cis-trans isomerase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05520.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s05520.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc80t5_C1; alternateUTRof:Thecc1EG012238t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc86t3_C1" mRNA complement(join(1713665..1713853,1714331..1715446, 1716423..1716587)) /locus_tag="TCM_012238" /product="Cyclophilin peptidyl-prolyl cis-trans isomerase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05520.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s05520.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc86t3_C1" CDS complement(join(1713751..1713853,1714331..1715211)) /locus_tag="TCM_012238" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cyclophilin peptidyl-prolyl cis-trans isomerase family protein isoform 1" /protein_id="EOY20907.1" /db_xref="Phytozome:POPTR_0012s05520.1" /db_xref="TAIR:AT1G74070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2N9" /translation="MLQNPKFLQSSPPLLHPPTAPAPLPQLPTIPASPSSPILRQFKL SRRELAISGNSSLLLLLSSQALEQLYPSKAEAEETPTEDNQQEQNVNTPSLDCSKKVA TKRAFLDIAIDGEPVGRIVIGLYGDDVPAGAGWFSSIVSGAAGISYRRKEFIKIMPNY VQHGGLRSFGVDAERAKRTGSSLGIENLREEWERVYDKCPGAKNLAGSVSIIVRDPSK PPPKLKLVARKGKLEIDQEEIGTEPNGTEFVIAIKDSPELDASALVVGEVLEGMEVAK RIGQVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLITNCGLMD" CDS complement(join(1713751..1713853,1714331..1715211)) /locus_tag="TCM_012238" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cyclophilin peptidyl-prolyl cis-trans isomerase family protein isoform 1" /protein_id="EOY20908.1" /db_xref="Phytozome:POPTR_0012s05520.1" /db_xref="TAIR:AT1G74070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2N9" /translation="MLQNPKFLQSSPPLLHPPTAPAPLPQLPTIPASPSSPILRQFKL SRRELAISGNSSLLLLLSSQALEQLYPSKAEAEETPTEDNQQEQNVNTPSLDCSKKVA TKRAFLDIAIDGEPVGRIVIGLYGDDVPAGAGWFSSIVSGAAGISYRRKEFIKIMPNY VQHGGLRSFGVDAERAKRTGSSLGIENLREEWERVYDKCPGAKNLAGSVSIIVRDPSK PPPKLKLVARKGKLEIDQEEIGTEPNGTEFVIAIKDSPELDASALVVGEVLEGMEVAK RIGQVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLITNCGLMD" mobile_element complement(1715515..1715622) /note="source:CACAO_PIF_E119_scaffold_3 4584 4687" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 1716810..1716854 /note="source:CACAO_M_E234942_F88_scaffold_117 5245 5289" /mobile_element_type="retrotransposon:LTR/Copia" gene 1717309..1720438 /locus_tag="TCM_012239" /note="dbxref CacaoGD:Thecc1EG012239" mRNA join(1717309..1717638,1717934..1718160,1719216..1719316, 1720173..1720438) /locus_tag="TCM_012239" /product="Nucleic acid-binding, OB-fold-like protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022737001" /inference="similar to AA sequence:TAIR:AT3G18580.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08292t00001" CDS join(1717378..1717638,1717934..1718160,1719216..1719316, 1720173..1720252) /locus_tag="TCM_012239" /codon_start=1 /product="Nucleic acid-binding, OB-fold-like protein, putative" /protein_id="EOY20909.1" /db_xref="TAIR:AT3G18580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LII1" /translation="MAKSMAVLSRRVYRSLLSNPKTPQLSMPFCTTTPSSSTESCDSD SDSVPYSTPSSPSTLSESSKDSNTQRRLYDSPLENGLDVGVYKAILVGQVGQTPVQKK LRSGLAVTMFSVATGGIRNNRRPHENEEPQEYANRCAVQWHRICVYQDKLGELLMKHV LPGMTLYLEGNLETKIFTDPITGLVRRIREVSIRRNGRVLVLGKGDNTQQATPRELKG AGIY" mobile_element 1720775..1720856 /note="source:CACAO_PIF_E8_scaffold_1 308 389" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(1723373..1723524) /note="source:scaffold_5_CACTA_0599 17506 17650" /mobile_element_type="transposon:TIR/CACTA" gene 1723948..1730644 /locus_tag="TCM_012240" /note="dbxref CacaoGD:Thecc1EG012240" mRNA join(1723948..1724217,1724448..1724548,1725088..1725159, 1725241..1726317,1726610..1726675,1727583..1727648, 1727763..1727828,1727939..1728001,1728111..1728176, 1729019..1729216,1729328..1729438,1729536..1730644) /locus_tag="TCM_012240" /product="Binding-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g013950.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0008s11390.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc371t10" mRNA join(1724002..1724217,1724448..1724548,1725088..1725159, 1725241..1726317,1726610..1726675,1727583..1727648, 1727763..1727828,1727939..1728001,1728111..1728176, 1729019..1729216,1729328..1729563) /locus_tag="TCM_012240" /product="Binding-like protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g013950.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0008s11390.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc553t7; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc371t10" mRNA join(1724002..1724217,1724448..1724548,1725088..1725159, 1725241..1726317,1726610..1726675,1727583..1727648, 1727763..1727966) /locus_tag="TCM_012240" /product="Binding-like protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g013950.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0008s11390.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc570t5; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc371t10" mRNA join(1724006..1724217,1724448..1724548,1725088..1725159, 1725325..1726317,1726610..1726675,1727583..1727648, 1727763..1727828,1727939..1728001,1728111..1728176, 1729019..1729216,1729328..1729438,1729536..1730149) /locus_tag="TCM_012240" /product="Binding-like protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g013950.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0008s11390.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc371t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc371t10" mRNA join(1724006..1724217,1724448..1724548,1725088..1725159, 1725241..1726317,1726610..1726675,1727583..>1727826) /locus_tag="TCM_012240" /product="Binding-like protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g013950.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0008s11390.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial3; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc575t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc371t10" CDS join(1724079..1724217,1724448..1724548,1725088..1725159, 1725241..1726317,1726610..1726675,1727583..1727648, 1727763..1727828,1727939..1728001,1728111..1728176, 1729019..1729216,1729328..1729438,1729536..1729682) /locus_tag="TCM_012240" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Binding-like protein isoform 1" /protein_id="EOY20910.1" /db_xref="Phytozome:POPTR_0008s11390.1" /db_xref="TAIR:AT1G26110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SEH0" /translation="MATTEASQSADSYVGSFISLISKSEIRYEGVLFRINPHESSIGL KNVRSFGTEGRKKDGPQVLPSDKVYDYIYFRGSDIKDLQVLSSLSVQSVAAIPDDPAI IQSHYQHPAASSSLPHSSTSSMTSFSSNSQLALPSSNYQGSVPQYHPVGHMVSWGSST PPTVNSNEHTVPMYWQGLNGPSGGYSYLHPSLLRPPPGLLASPGTQQMEHSTVDASIP SGATHLPEIPHLLLPTSSASSLNSTLLPSSSASSQNSILFPPSSASPQNSTMQPPSSA SSQNPTVLPPSSASTLNSTFVSISSSALHSKLPIVHAASLVSNEASNYTAYFDPNAPG LTLSSNLSLASSLTSSVDTNNIALQFGEKSKSTLGSTSSYPNMPTPTPPIVGTSGSNQ LEVPTPSLVTPGQLLQSAPTSPPRILSSSLPLQTAQKDIEVVQTSTLEPLSTDADEAQ APMLPTASVSSGKMNEASLDSQHHDKGLVRGRRNGPHVATSHTHRIIRGYVEERENNS NRVTLQSHHTNKVHVRGRRNGLYGTASHFQPSNRSHTGGMEKMNGTAPRPYYGSRGRA QGRTNGISRSVTEYPTDFDFEAMNEKFNKEEVWNQLGKSSKGISEDNGDADDSQEDDR QHEDAEGLLKADIKPVYVKDEFFDSLSSNTFDHKPKKGRSKFSEQKKLDAETFGGFHI NRGGHGGRRAGHGGWSRGSRYGRGYEHGGRGQGRAVWSRVT" CDS join(1724079..1724217,1724448..1724548,1725088..1725159, 1725325..1726317,1726610..1726675,1727583..1727648, 1727763..1727828,1727939..1728001,1728111..1728176, 1729019..1729216,1729328..1729438,1729536..1729682) /locus_tag="TCM_012240" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Binding-like protein isoform 2" /protein_id="EOY20911.1" /db_xref="Phytozome:POPTR_0008s11390.1" /db_xref="TAIR:AT1G26110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SEH0" /translation="MATTEASQSADSYVGSFISLISKSEIRYEGVLFRINPHESSIGL KNVRSFGTEGRKKDGPQVLPSDKVYDYIYFRGSDIKDLQVLSSLSVQSVAAIPDDPAI IQLALPSSNYQGSVPQYHPVGHMVSWGSSTPPTVNSNEHTVPMYWQGLNGPSGGYSYL HPSLLRPPPGLLASPGTQQMEHSTVDASIPSGATHLPEIPHLLLPTSSASSLNSTLLP SSSASSQNSILFPPSSASPQNSTMQPPSSASSQNPTVLPPSSASTLNSTFVSISSSAL HSKLPIVHAASLVSNEASNYTAYFDPNAPGLTLSSNLSLASSLTSSVDTNNIALQFGE KSKSTLGSTSSYPNMPTPTPPIVGTSGSNQLEVPTPSLVTPGQLLQSAPTSPPRILSS SLPLQTAQKDIEVVQTSTLEPLSTDADEAQAPMLPTASVSSGKMNEASLDSQHHDKGL VRGRRNGPHVATSHTHRIIRGYVEERENNSNRVTLQSHHTNKVHVRGRRNGLYGTASH FQPSNRSHTGGMEKMNGTAPRPYYGSRGRAQGRTNGISRSVTEYPTDFDFEAMNEKFN KEEVWNQLGKSSKGISEDNGDADDSQEDDRQHEDAEGLLKADIKPVYVKDEFFDSLSS NTFDHKPKKGRSKFSEQKKLDAETFGGFHINRGGHGGRRAGHGGWSRGSRYGRGYEHG GRGQGRAVWSRVT" CDS join(1724079..1724217,1724448..1724548,1725088..1725159, 1725241..1726317,1726610..1726675,1727583..1727648, 1727763..1727828,1727939..1728001,1728111..1728176, 1729019..1729216,1729328..1729471) /locus_tag="TCM_012240" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Binding-like protein isoform 3" /protein_id="EOY20912.1" /db_xref="Phytozome:POPTR_0008s11390.1" /db_xref="TAIR:AT1G26110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SEH0" /translation="MATTEASQSADSYVGSFISLISKSEIRYEGVLFRINPHESSIGL KNVRSFGTEGRKKDGPQVLPSDKVYDYIYFRGSDIKDLQVLSSLSVQSVAAIPDDPAI IQSHYQHPAASSSLPHSSTSSMTSFSSNSQLALPSSNYQGSVPQYHPVGHMVSWGSST PPTVNSNEHTVPMYWQGLNGPSGGYSYLHPSLLRPPPGLLASPGTQQMEHSTVDASIP SGATHLPEIPHLLLPTSSASSLNSTLLPSSSASSQNSILFPPSSASPQNSTMQPPSSA SSQNPTVLPPSSASTLNSTFVSISSSALHSKLPIVHAASLVSNEASNYTAYFDPNAPG LTLSSNLSLASSLTSSVDTNNIALQFGEKSKSTLGSTSSYPNMPTPTPPIVGTSGSNQ LEVPTPSLVTPGQLLQSAPTSPPRILSSSLPLQTAQKDIEVVQTSTLEPLSTDADEAQ APMLPTASVSSGKMNEASLDSQHHDKGLVRGRRNGPHVATSHTHRIIRGYVEERENNS NRVTLQSHHTNKVHVRGRRNGLYGTASHFQPSNRSHTGGMEKMNGTAPRPYYGSRGRA QGRTNGISRSVTEYPTDFDFEAMNEKFNKEEVWNQLGKSSKGISEDNGDADDSQEDDR QHEDAEGLLKADIKPVYVKDEFFDSLSSNTFDHKPKKGRSKFSEQKKLDAEVVCSQGL FLC" CDS join(1724079..1724217,1724448..1724548,1725088..1725159, 1725241..1726317,1726610..1726675,1727583..1727648, 1727763..1727876) /locus_tag="TCM_012240" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Binding-like protein isoform 4" /protein_id="EOY20913.1" /db_xref="Phytozome:POPTR_0008s11390.1" /db_xref="TAIR:AT1G26110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SEH0" /translation="MATTEASQSADSYVGSFISLISKSEIRYEGVLFRINPHESSIGL KNVRSFGTEGRKKDGPQVLPSDKVYDYIYFRGSDIKDLQVLSSLSVQSVAAIPDDPAI IQSHYQHPAASSSLPHSSTSSMTSFSSNSQLALPSSNYQGSVPQYHPVGHMVSWGSST PPTVNSNEHTVPMYWQGLNGPSGGYSYLHPSLLRPPPGLLASPGTQQMEHSTVDASIP SGATHLPEIPHLLLPTSSASSLNSTLLPSSSASSQNSILFPPSSASPQNSTMQPPSSA SSQNPTVLPPSSASTLNSTFVSISSSALHSKLPIVHAASLVSNEASNYTAYFDPNAPG LTLSSNLSLASSLTSSVDTNNIALQFGEKSKSTLGSTSSYPNMPTPTPPIVGTSGSNQ LEVPTPSLVTPGQLLQSAPTSPPRILSSSLPLQTAQKDIEVVQTSTLEPLSTDADEAQ APMLPTASVSSGKMNEASLDSQHHDKGLVRGRRNGPHVATSHTHRIIRGYVEERENNS NRVTLQSHHTNKVHVRGRRNGVILLASLSYRTSLYL" CDS join(1724079..1724217,1724448..1724548,1725088..1725159, 1725241..1726317,1726610..1726675,1727583..>1727825) /locus_tag="TCM_012240" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Binding-like protein isoform 5" /protein_id="EOY20914.1" /db_xref="Phytozome:POPTR_0008s11390.1" /db_xref="TAIR:AT1G26110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SEH0" /translation="MATTEASQSADSYVGSFISLISKSEIRYEGVLFRINPHESSIGL KNVRSFGTEGRKKDGPQVLPSDKVYDYIYFRGSDIKDLQVLSSLSVQSVAAIPDDPAI IQSHYQHPAASSSLPHSSTSSMTSFSSNSQLALPSSNYQGSVPQYHPVGHMVSWGSST PPTVNSNEHTVPMYWQGLNGPSGGYSYLHPSLLRPPPGLLASPGTQQMEHSTVDASIP SGATHLPEIPHLLLPTSSASSLNSTLLPSSSASSQNSILFPPSSASPQNSTMQPPSSA SSQNPTVLPPSSASTLNSTFVSISSSALHSKLPIVHAASLVSNEASNYTAYFDPNAPG LTLSSNLSLASSLTSSVDTNNIALQFGEKSKSTLGSTSSYPNMPTPTPPIVGTSGSNQ LEVPTPSLVTPGQLLQSAPTSPPRILSSSLPLQTAQKDIEVVQTSTLEPLSTDADEAQ APMLPTASVSSGKMNEASLDSQHHDKGLVRGRRNGPHVATSHTHRIIRGYVEERENNV MRKYSLYSLYAMNIGIYLLSIIYIFTYLFGIVLYIFQSNRVTLQSHHTNKVHVRGRRN " gene complement(1731384..1731961) /locus_tag="TCM_012241" /note="dbxref CacaoGD:Thecc1EG012241" mRNA complement(1731384..1731961) /locus_tag="TCM_012241" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(1731494..1731781) /locus_tag="TCM_012241" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20915.1" /translation="MEIMSFNFADDFAYTDPVDGSVASKQHDMDAQVALKPLIDLALS VSMLKDFTAMEEPTGYSHHIIKFMYNYLLMNYIYRRISKSTLSPTVTISII" mobile_element 1733062..1733166 /note="source:CACAO_Again_on_E4_scaffold_1 1 112" /mobile_element_type="transposon:TIR/hAT" gene 1734613..1736976 /locus_tag="TCM_012242" /note="dbxref CacaoGD:Thecc1EG012242" mRNA join(1734613..1734675,1734920..1735189,1735281..1735417, 1736344..1736508,1736623..1736901) /locus_tag="TCM_012242" /product="Adenine nucleotide alpha hydrolases-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g23310.1" /inference="similar to AA sequence:Phytozome:Glyma06g23310.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00813t00001; inference alignment:Newbler:10:TSA:cgbaP2_g13293t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8085t1" mobile_element complement(1734638..1734682) /note="source:CACAO_M_E23752_F369_scaffold_4 2084 2130" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(1734911..1735189,1735281..1735417,1736344..1736508, 1736623..1736976) /locus_tag="TCM_012242" /product="Adenine nucleotide alpha hydrolases-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g23310.1" /inference="similar to AA sequence:Phytozome:Glyma06g23310.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g946t1; alternateUTRof:Thecc1EG012242t2; inference alignment:Newbler:10:TSA:cgbaP2_g13293t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8085t1" mRNA join(1734913..1735189,1735296..1735417,1736344..1736508, 1736623..1736898) /locus_tag="TCM_012242" /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g23310.1" /inference="similar to AA sequence:Phytozome:Glyma06g23310.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13293t00001; inference alignment:Newbler:10:TSA:cgbaP2_g13293t00001" CDS join(1734965..1735189,1735281..1735417,1736344..1736508, 1736623..1736740) /locus_tag="TCM_012242" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein isoform 2" /protein_id="EOY20917.1" /db_xref="Phytozome:Glyma06g23310.1" /db_xref="TAIR:AT1G48960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2P3" /translation="MDVRKIVVVVEDEDVARTALQWALHNLLRYGDLLTLLHVFSPTT SRSKKKARRLRLQGYQLALSFKETCNSNFFNRIVLQTNIEIIVTEGDQEGRKILAIVR EIGASVLVVGLHDQSFLYKLAMAHDSIASSFNCRVLAIKQPELVPPRNKTRAMLSGLD SSTNMDFSQIEISGLQVPDIPTPKIPYRICPSPSAIIWRSSRKSRKKRSYTNGA" CDS join(1734965..1735189,1735281..1735417,1736344..1736508, 1736623..1736740) /locus_tag="TCM_012242" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein isoform 2" /protein_id="EOY20918.1" /db_xref="Phytozome:Glyma06g23310.1" /db_xref="TAIR:AT1G48960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2P3" /translation="MDVRKIVVVVEDEDVARTALQWALHNLLRYGDLLTLLHVFSPTT SRSKKKARRLRLQGYQLALSFKETCNSNFFNRIVLQTNIEIIVTEGDQEGRKILAIVR EIGASVLVVGLHDQSFLYKLAMAHDSIASSFNCRVLAIKQPELVPPRNKTRAMLSGLD SSTNMDFSQIEISGLQVPDIPTPKIPYRICPSPSAIIWRSSRKSRKKRSYTNGA" CDS join(1734965..1735189,1735296..1735417,1736344..1736508, 1736623..1736740) /locus_tag="TCM_012242" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative isoform 1" /protein_id="EOY20916.1" /db_xref="Phytozome:Glyma06g23310.1" /db_xref="TAIR:AT1G48960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2P3" /translation="MDVRKIVVVVEDEDVARTALQWALHNLLRYGDLLTLLHVFSPTT SRSKKKARRLRLQGYQLALSFKETCNSNFFNTNIEIIVTEGDQEGRKILAIVREIGAS VLVVGLHDQSFLYKLAMAHDSIASSFNCRVLAIKQPELVPPRNKTRAMLSGLDSSTNM DFSQIEISGLQVPDIPTPKIPYRICPSPSAIIWRSSRKSRKKRSYTNGA" mobile_element 1737489..1737525 /note="source:INTACT36_F116_scaffold_6-int 5718 5754" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1739145..1739282 /note="source:scaffold_4_CACTA_0483 1011 1156" /mobile_element_type="transposon:TIR/CACTA" gene 1739882..1744249 /locus_tag="TCM_012243" /note="dbxref CacaoGD:Thecc1EG012243" mRNA join(1739882..1740281,1740366..1740556,1741300..1741521, 1741952..1742829,1742960..1744249) /locus_tag="TCM_012243" /product="BED zinc finger,hAT family dimerization domain" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008224001" /inference="similar to AA sequence:Phytozome:GSVIVT01008224001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc304t1" CDS join(1740517..1740556,1741300..1741521,1741952..1742829, 1742960..1743862) /locus_tag="TCM_012243" /codon_start=1 /product="BED zinc finger,hAT family dimerization domain" /protein_id="EOY20919.1" /db_xref="Phytozome:GSVIVT01008224001" /db_xref="TAIR:AT1G18560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ78" /translation="MEWNSNNTFKTYKDMEPKAMMDMALIPNIDPVDIGLGSSEKGSV VPTSKPRKKTMTSVYLKYFETAPDGKTRRCKFCGQSYSIATATGNLGRHLSNRHPGYD KTGDVVTTSSVPQPTTPVIKKSQPQGRAAQVDYDHLNWLLIKWLILASLPPSTLEEKW LANSFKFLNPSIQLWPGEKYKAVFREVFRSMREDVRVSLEQVSSKVSVTLDFWTSYEQ IFYMSVTCQWIDENWSFQKVLLDICQVPYPCTGSEIYNTLFKVLKMYNIENKVLSCTH DNSQNAIHACHTLKEDLDGQKVGPFCYIPCAARTLSLIIDDALRTTKPVIAKVREFVQ ELNASLDISEDFIQLTTAYQEGSWQFPLDASARWSGNYQMLDLVHKAGKSMDAVVRKN EEILGSRILLNGAEKNVANIVHNYLEPFYKVINEICVNNPPTIGMVIVYMDHISDTIA TRQTPDWLKSAAEDMAKKLRSYNNQVCNIFIYMTAILDPRIKCELIPESLNSENYLEE ARAHFMRNYYTSHFSSMTSGYSAQDIEDGGSVSFAEEIARKKRRASMSNVADELTQYL SESPAPTKTDVLEWWKVNSTRYPRLSAMARDFLAVQATSVKPEELFCSKGDEIDKQRF CMPHDSTQAILCIKSWTQGGLKLKYKSSEIDYERLMELAAAAAADNISAGFDKKQK" gene complement(1744378..1747852) /locus_tag="TCM_012244" /note="dbxref CacaoGD:Thecc1EG012244" mRNA complement(join(1744378..1745064,1745167..1745683, 1746069..1746734,1746833..1746885,1746982..1747309, 1747681..1747852)) /locus_tag="TCM_012244" /product="Actin binding-like protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g23330.1" /inference="similar to AA sequence:ricco:30174.m008729" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1734t1" CDS complement(join(1744592..1745064,1745167..1745683, 1746069..1746734,1746833..1746885,1746982..1747075)) /locus_tag="TCM_012244" /note="dbxref ricco:30174.m008729" /codon_start=1 /product="Actin binding-like protein" /protein_id="EOY20920.1" /db_xref="TAIR:AT3G25690.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RE46" /translation="MIFRVSILVVASVAPFAVIRKRWKKQNLMLPAKDCSSSQQVDMA EDNIPEKDMEEEEVKVVNSKNVEKVLKPNLTQKRNCEVLELDRQWKLGNREIEQSQNL IKELEKRRVTLEGKPLELYSLKEKLSYIGCLQGNLDDKTAEVDKLNFRIFALKAEIKD LQEIIRQGNLAMKQLEKAKKMTEQMQMENGNASQIKGQIMVLEEQLSGFTTNETSAPN DMVKKKLEAVKTIEFEVVKMKRRNKELELEKRELSVKLFAAYAKISALSDMTQSKTIA KISELRHANGDLSEQVERLQKSRFDMVEELVYQRWLNACLRAEIQGHQKSSRKTLQKE LPKPSDHKPRKITTQDPDINSTSSYTSSTESEDTDSSTIESSSSGHISISKNSGIGHK SSWRSSMDGSSVVSSLDKSSTGSPLERNGIIRRLSNSMVPSKTSMPSTKLDVETVPSA KQVLTKFVEGVLDDKEIATLVSGHRTRMKAGLQSQSAMAGEKHEFSSSEVSLAKPDQS SDSKRRYVDNDDTAAQEVSRIANARPKGLHSAFPMSFLIKIRWILTSCLLYLHFSFFY LCYLSISYIFLPGYSNHNIFMKHGTANNYIHSFT" mobile_element complement(1747497..1747606) /note="source:scaffold_4_CACTA_0483 12606 12726" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1747980..1748103 /note="source:CACAO_MITE_S193_scaffold_8 20 142" /mobile_element_type="transposon:TIR/MITE" gene 1748110..1753209 /locus_tag="TCM_012245" /note="dbxref CacaoGD:Thecc1EG012245" mRNA join(1748110..1749050,1749128..1749247,1750131..1750480, 1751184..1751928,1752134..1752236,1752338..1752392, 1752596..1753209) /locus_tag="TCM_012245" /product="NagB/RpiA/CoA transferase-like superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene26198" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019520t3" /inference="similar to AA sequence:ricco:30174.m008731" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g979t1" CDS join(1748558..1749050,1749128..1749247,1750131..1750480, 1751184..1751928,1752134..1752236,1752338..1752392, 1752596..1752658) /locus_tag="TCM_012245" /note="dbxref ricco:30174.m008731; paralog of Thecc1EG019520t3" /codon_start=1 /product="NagB/RpiA/CoA transferase-like superfamily protein" /protein_id="EOY20921.1" /db_xref="TAIR:AT5G38640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KDY6" /translation="MDARRVTRAVPRVRQVGFFTPNAPPEQPGPVRSQSGPPNSNSPP LSGSPASNSLSPVMIPPPRHLSDNLGARTGAVPVPGRANAGDHATVGSYNPADSVLGL ESPPPTRIGDGESSEETESSLGWYRRNNPAKFASSFPGGGFDLSPVKQPEIVSGVEAK NQPPEKNEVQKGQASSSKPSKAKTTKAERRALQESQRAAKAASKAEANKSGGGAASSK TVKQPSQKKDAPPVASSVATSERIGVDRPAEKERKKDVPPPRMQFDDESRVGKAKRRS VLNQPEARNSIELFRHLPPHKNGTQLPYLESKFFELHDKHPAVYKVGLQYLTGDLSGG NARCIAMLQAFQEAIRDYSTPPEKTLIRDLTSKIGGFVSFLIECRPLSMSMGNAIRFL KSRIAKLPPILSESEAKAALCSDIDRFINEKIVLADKVIVRHAATKIRDGDVLLTYGS SCVVEMILLYAHELGKQFRVVVVDSRPMLEGEKLLRRLVAKGLSCTYTHLNAISYIMH EVTRVLLGASSILSNGTVYSRVGTASVAMVAYAYRVPVLICCEAYKFHERVQLDSICF NELGDPDAIAKVPGRVDVNYLDNLSDKQKENLKLLNLKYDATPSDYISMIVTDYGMIP PTSVPVIVREYRKEYLLI" gene 1753510..1754441 /locus_tag="TCM_012246" /note="dbxref CacaoGD:Thecc1EG012246" mRNA 1753510..1754441 /locus_tag="TCM_012246" /product="Oleosin family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037237t1" /inference="similar to AA sequence:Phytozome:Glyma05g07880.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2653t1" CDS 1753673..1754164 /locus_tag="TCM_012246" /note="paralog of Thecc1EG037237t1" /codon_start=1 /product="Oleosin family protein" /protein_id="EOY20922.1" /db_xref="Phytozome:Glyma05g07880.1" /db_xref="TAIR:AT3G18570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B6UIA7" /translation="MAERNPSQQRAAPRPNPTASAASTFLQKFQAHAPNSAQLLGFLT LFVSASILITLTGLTVTAAILGLVIFMPLIVISSPIWIPVGTVLFVTVAGFLSACGFG LVVMAALSWMYRYFRGMHPPGSDRVDYARSRIYDTASHVKDYAMEYGGYLQSKVKDAA PGA" mobile_element complement(1754677..1754758) /note="source:scaffold_3_CACTA_0377 2476 2555" /mobile_element_type="transposon:TIR/CACTA" gene complement(1758690..1759434) /locus_tag="TCM_012247" /note="dbxref CacaoGD:Thecc1EG012247" mRNA complement(1758690..1759434) /locus_tag="TCM_012247" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30174.m008727" /inference="similar to AA sequence:ricco:30174.m008727" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3753t1_C2" CDS complement(1758884..1759369) /locus_tag="TCM_012247" /note="dbxref ricco:30174.m008727" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20923.1" /db_xref="TAIR:AT1G49000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2P8" /translation="MDSSEHGSTSPKQRLTLSVLVSFMALCAKHAGRVSKKLKPKPKE NGLASDSPRFSMPKTPLRSPRPKQLLTTISNKAITLVHRKKLGEENGKGTRHAPKEEE EEFGDGGVWQKAILMGDKCQPLDFSGVIYYDSKGNQLDELPIRSPRASPLPGYLAQRG L" mobile_element complement(1759640..1759880) /note="source:scaffold_5_CACTA_0580 4387 4662" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1762192..1762256 /note="source:scaffold_9_CACTA_0946 17761 17825" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1766557..1775617 /note="source:scaffold_3_CACTA_0377 1 9061" /mobile_element_type="transposon:TIR/CACTA" gene 1767773..1768515 /locus_tag="TCM_012248" /note="dbxref CacaoGD:Thecc1EG012248" mRNA 1767773..1768515 /locus_tag="TCM_012248" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30174.m008724" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 1767827..1768096 /locus_tag="TCM_012248" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20924.1" /translation="MRRKINKMATNKSKTTLTYKGKTSMVQGVWTSRDKPFLGAVTWV DLVAAGRFRLDGRNVSWTMPSMVKKWGEVEFASQHFAVAQSVMGN" gene 1773722..1795016 /locus_tag="TCM_012249" /note="dbxref CacaoGD:Thecc1EG012249" mRNA join(1773722..1773891,1773996..1774320,1774879..1775024, 1775105..1775171,1777448..1777647,1777774..1777927, 1780213..1780297,1780463..1780554,1781406..1781531, 1782388..1782441,1782662..1782730,1783952..1784049, 1784154..1784498,1784590..1784677,1786672..1786797, 1786882..1786938,1787407..1787486,1787574..1787616, 1788021..1788107,1790311..1790400,1791208..1791266, 1791342..1791432,1791518..1791683,1791812..1791995, 1792999..1795016) /locus_tag="TCM_012249" /product="TBP-associated factor 2" /inference="alignment:exonerate-protein:2:frave:gene26210" /inference="similar to AA sequence:Phytozome:Glyma17g13080.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1163t6" CDS join(1773770..1773891,1773996..1774320,1774879..1775024, 1775105..1775171,1777448..1777647,1777774..1777927, 1780213..1780297,1780463..1780554,1781406..1781531, 1782388..1782441,1782662..1782730,1783952..1784049, 1784154..1784498,1784590..1784677,1786672..1786797, 1786882..1786938,1787407..1787486,1787574..1787616, 1788021..1788107,1790311..1790400,1791208..1791266, 1791342..1791432,1791518..1791683,1791812..1791995, 1792999..1794094) /locus_tag="TCM_012249" /codon_start=1 /product="TBP-associated factor 2" /protein_id="EOY20925.1" /db_xref="Phytozome:Glyma17g13080.1" /db_xref="TAIR:AT1G73960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPF0" /translation="MAKPRKPKPDAEDSKPANSGAVVRHQKLCLSIDTNLRRIYGYTE LEIEVPDIGIVGLHAENLGIESVLVEGEPTEFEYYPHNQAADSEKPWASAASSLSSAA DAAAAAYVTALEMELMPNFLINCCNKMHIEQINTENNGVQSSAEVKQNVKSVRVNYWV EKMETGIHFEDNVIHTDNQIRRARCWFPCIDDNNQRCCYDLEFTVAHNLVAVSNGSLL YQVLSKDDPPRKTYVYRLDVPVAAQWISLAVGPFEILPDQHNGLISHMCLPPNLPKLR NTVEFFHSAFSDYEQYLDAKFPFGSYKQVFLAPEMAISSSTFGASLSILSSQVLFDEK VIDQTIDTCIKLAFALARQWFGVYITPEAPTDEWLLDGLAGFLTDLFIKKFLGNNEAQ YRRYKANCAVCKADDSGATALSSSFACKDLYGTHSIGLNGKIRSWKSVAILQVLEKQM GPDFFKKILQAIISRAQGTTCPVRSLSTKEFRHFANKIGNLERPFLKEFFPRWVGSHG CPVLRMGFSYNKRKNIIELAVLRECTATLDSSVSVPNANPDSENRDGDIGWPGVMTVR VYELDGMSDHPDLPMSGDAWQLLEIACHSKLAARRYQKPKKGSKPDGSDDNGDMPSLD VRSSVDSPLLWIRADPEMEYLAEIHFNQPVQMWINQLEKDEDVVAQAQAIAALESLPE FSPSVVNALNNFLTDSKAFWRVRIEAAFALASTSSEETDLAGLQHLVRFYKSRRFDAD IGLPKPNDFRDFPEYFVLEAIPRAIAMVRAADKKSPREAVEFVLQLLKYNDNNGNPYS DVFWLAALVQSVGELEFGQQSIFLLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLA QIALKLSGFIHLDHVCELIKPFRDFKTIWQVRIEASRALLDLEFNCNGINAALLLFIK YIEEEPSLRGQVKLGVHAMRLCQIRGGSVSNEDIKSTTLVALLQLLESRIAFNNVSLR HYMFSILQVLAGRTPTLYGVPKDKVRRMADVEICNEQKNHFAALVAEIKPAEPPAANP NLLHDNLAIPEASKGVDTVSNSHERKTSVVKIRVKQSGTTSKAEEGDDATVERSQGRH PDADRGATSSVSVDAPQRNSAEAVSISNQNIEEVNSFHDHGSRITASIGSAKIASEGD NFGKELQCTADSSNVAACPRPDNPSSPSIIQDNYIDAEGQKFASLQTLSVSRQDGGSL GTVDSPNRGKEKKKKKKDKEKKKDKEKKRKREDLKGHRDDLEYLEKKRLKKERKHKEK EMAKLLSEAKTPSTTELRGKKEETTSLTKELPGKKEELVAKSATVPLKPSAPPKVVIT KSETRTEPTEGTSAPKFRIKIKNKSLNKS" mobile_element complement(1780560..1780655) /note="source:CACAO_M_E52882_F369_scaffold_8 1396 1494" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1780574..1780644) /note="source:scaffold_1_CACTA_0011 7457 7528" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1780645..1780668 /note="source:INTACT296_F13_scaffold_9-int 13166 13261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1789049..1789125 /note="source:scaffold_3_CACTA_0377 7963 8036" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1803158..1803217 /note="source:INTACT595_F266_scaffold_7-int 7922 7983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1804428..1804459 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5652 5730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1804460..1804514) /note="source:CACAO_PIF_E144_scaffold_10 6004 6058" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 1804469..1804528 /note="source:CACAO_Mutator_E1149_scaffold_5 4716 4773" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1807870..1807933 /note="source:scaffold_5_CACTA_0608 8723 8786" /mobile_element_type="transposon:TIR/CACTA" gene complement(1812608..1814659) /locus_tag="TCM_012252" /note="dbxref CacaoGD:Thecc1EG012252" mRNA complement(join(1812608..1812932,1813082..1814314, 1814538..1814659)) /locus_tag="TCM_012252" /product="TCP family transcription factor, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03140.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008234001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1085t1" mRNA complement(join(1812643..1812926,1813082..1814314, 1814538..1814552)) /locus_tag="TCM_012252" /product="TCP family transcription factor, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03140.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008234001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g971t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1085t1" CDS complement(join(1812867..1812926,1813082..1814161)) /locus_tag="TCM_012252" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="TCP family transcription factor, putative isoform 2" /protein_id="EOY20927.1" /db_xref="Phytozome:GSVIVT01008234001" /db_xref="TAIR:AT3G18550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIV0" /translation="MFPSNINRYNDPIAYIDHSILHRHFPNDIISFSKPEDLPLSLFH FPSPCYNHCELELEEDYGVFLPQHHDLLLHQQTLTTDNSVSDTIIIMPDHSSKNEGST INCTRKSHNATDQQMEKKRSSKRDRHSKINTAKGPRDRRMRLSLEVAREFFGLQDMLG YDKASRTVEWLLIQSRSEIKKLARSKLSQMNNSCSVAAAKSPSSTSEGEVVSGIDKAA VEGSISKGKPSTKEKKVRQPRKITFRPLARDLREKARARAKARTKEKTMRAQRFDESK LCDDTRNDDLNKFSYWSSVETGEESGSQHHIRNPSFQAAVAEVKELSSRDREHIRIHG DMGDESLAIMNNSTFNCLQNAGIHQELTSFLSFGKSWDCYNNQSL" CDS complement(join(1812867..1812932,1813082..1814161)) /locus_tag="TCM_012252" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="TCP family transcription factor, putative isoform 1" /protein_id="EOY20926.1" /db_xref="Phytozome:GSVIVT01008234001" /db_xref="TAIR:AT3G18550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIV0" /translation="MFPSNINRYNDPIAYIDHSILHRHFPNDIISFSKPEDLPLSLFH FPSPCYNHCELELEEDYGVFLPQHHDLLLHQQTLTTDNSVSDTIIIMPDHSSKNEGST INCTRKSHNATDQQMEKKRSSKRDRHSKINTAKGPRDRRMRLSLEVAREFFGLQDMLG YDKASRTVEWLLIQSRSEIKKLARSKLSQMNNSCSVAAAKSPSSTSEGEVVSGIDKAA VEGSISKGKPSTKEKKVRQPRKITFRPLARDLREKARARAKARTKEKTMRAQRFDESK LCDDTRNDDLNKFSYWSSVETGEESGSQHHIRNPSFQAAVAEVKELSSRDREHIRIHG DMGDESLAIMNNSTFNCLQNAGIHQEHQLTSFLSFGKSWDCYNNQSL" mobile_element 1815076..1815140 /note="source:CACAO_M_S_E144734_F98_scaffold_10 535 586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1821550..1821616) /note="source:scaffold_10_CACTA_0138 1892 1956" /mobile_element_type="transposon:TIR/CACTA" gene 1821602..1830618 /locus_tag="TCM_012253" /note="dbxref CacaoGD:Thecc1EG012253" mRNA join(1821602..1822051,1822168..1822217,1822432..1822464, 1823141..1824214,1824517..1825071,1825145..1825255, 1825350..1825439,1825527..1825598,1825745..1825855, 1826457..1826583,1827626..1827828,1828212..1828364, 1829262..1829393,1829463..1829478,1829583..1830618) /locus_tag="TCM_012253" /product="MUTS isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05670.1" /inference="similar to AA sequence:ricco:30174.m008720" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc387t1" mRNA join(1821841..1822051,1822168..1822217,1822432..1822464, 1823141..1824214,1824517..1825071,1825145..1825255, 1825350..1825439,1825527..1825598,1825745..1825855, 1826457..1826583,1827626..1827828,1828212..1828364, 1829262..1829478,1829583..1829981) /locus_tag="TCM_012253" /product="MUTS isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05670.1" /inference="similar to AA sequence:ricco:30174.m008720" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc387t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc387t1" CDS join(1822003..1822051,1822168..1822217,1822432..1822464, 1823141..1824214,1824517..1825071,1825145..1825255, 1825350..1825439,1825527..1825598,1825745..1825855, 1826457..1826583,1827626..1827828,1828212..1828364, 1829262..1829393,1829463..1829478,1829583..1829710) /locus_tag="TCM_012253" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30174.m008720" /codon_start=1 /product="MUTS isoform 1" /protein_id="EOY20928.1" /db_xref="TAIR:AT3G18524.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O24617" /translation="MDENFDERNKLPELKLDAKQAQGFLSFFKTLPNDARAVRFFDRR DYYTAHGENATFIAKTYYRTTTALRQLGSGSDGLSSVTVSKSMFETIARDLLLERTDH TLELYEGSGSHLRLMKSGSPGNLGSFEDVLFANNEMQDTPVVVALLPNFRENGCTIGF SYVDLTKRVLGLAEFLDDSHFTNTESALVALGCKECLLPIESGKASECRTLNDALTRC GVMVTERKKTEFKARDLVQDLGRLIKGSIEPVRDLVSGFEFAPAALGALLSYAELLAD EGNYGNYSIRRYNLGSYMRLDSAAMRALNVLESRTDANKNFSLFGLMNRTCTAGMGKR LLHMWLKQPLLDVSEINSRLDLVQAFVEDTELRQALRQHLKRISDIERLMRNIEKTRA GLQHVVKLYQSSIRIPYIKSALEKYDGQFSSLIRERYLDPFELFTDDDHLNKFISLVE TSVDLDQLENGEYMISPSYDDALAALKNEQESLELQIHNLHKQTAIDLDLPVDKALKL DKGTQFGHVFRITKKEEPKVRKKLSTQFIILETRKDGVKFTSTKLKKLGDQYQKVLEE YKNCQKELVNRVVQTTATFSEVFEPLAGLLSELDVLLSFADLASSCPTPYTRPEITPA DVGDIVLEGSRHPCVEAQDWVNFIPNDCRLVRGKSWFQIITGPNMGGKSTFIRQVGVN ILMAQVGSFVPCEKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKS LIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALTHENVNDEPQA KQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVICLAREK AAELEDFSPTSIISNDARQEEGSKRKRECDPIDMSRGAAKAHKFLKDFADLPLESMDL KQALQQLPPTQETLTMAPEAAAEALLSSFRGGISDLSLSTGVSVIYLSSLPFL" CDS join(1822003..1822051,1822168..1822217,1822432..1822464, 1823141..1824214,1824517..1825071,1825145..1825255, 1825350..1825439,1825527..1825598,1825745..1825855, 1826457..1826583,1827626..1827828,1828212..1828364, 1829262..1829462) /locus_tag="TCM_012253" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30174.m008720" /codon_start=1 /product="MUTS isoform 2" /protein_id="EOY20929.1" /db_xref="TAIR:AT3G18524.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O24617" /translation="MDENFDERNKLPELKLDAKQAQGFLSFFKTLPNDARAVRFFDRR DYYTAHGENATFIAKTYYRTTTALRQLGSGSDGLSSVTVSKSMFETIARDLLLERTDH TLELYEGSGSHLRLMKSGSPGNLGSFEDVLFANNEMQDTPVVVALLPNFRENGCTIGF SYVDLTKRVLGLAEFLDDSHFTNTESALVALGCKECLLPIESGKASECRTLNDALTRC GVMVTERKKTEFKARDLVQDLGRLIKGSIEPVRDLVSGFEFAPAALGALLSYAELLAD EGNYGNYSIRRYNLGSYMRLDSAAMRALNVLESRTDANKNFSLFGLMNRTCTAGMGKR LLHMWLKQPLLDVSEINSRLDLVQAFVEDTELRQALRQHLKRISDIERLMRNIEKTRA GLQHVVKLYQSSIRIPYIKSALEKYDGQFSSLIRERYLDPFELFTDDDHLNKFISLVE TSVDLDQLENGEYMISPSYDDALAALKNEQESLELQIHNLHKQTAIDLDLPVDKALKL DKGTQFGHVFRITKKEEPKVRKKLSTQFIILETRKDGVKFTSTKLKKLGDQYQKVLEE YKNCQKELVNRVVQTTATFSEVFEPLAGLLSELDVLLSFADLASSCPTPYTRPEITPA DVGDIVLEGSRHPCVEAQDWVNFIPNDCRLVRGKSWFQIITGPNMGGKSTFIRQVGVN ILMAQVGSFVPCEKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKS LIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALTHENVNDEPQA KQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVICLAREK AAELEDFSPTSIISNDARQEEGSKRKRECDPIDMSRGAAKAHKFLKDFADLPLESMDL KQALQQVNKLRGDLEKDAVNCNWLRQFL" mobile_element 1832996..1834041 /note="source:CACAO_on_E683_scaffold_9 1323 2307" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(1835198..1835353) /note="source:CACAO_PIF_E465_scaffold_115 259 416" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 1835387..1846624 /locus_tag="TCM_012254" /note="dbxref CacaoGD:Thecc1EG012254" mRNA join(1835387..1835884,1838227..1838317,1838478..1838562, 1838773..1838857,1840444..1840513,1841118..1841187, 1842674..1842719,1842864..1843113,1843190..1843395, 1843494..1843568,1845016..1845085,1845308..1845388, 1845844..1845923,1846044..1846624) /locus_tag="TCM_012254" /product="Transmembrane Fragile-X-F-associated protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008237001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011872t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s05680.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01034t00001" mRNA join(1835638..1835884,1837163..1837719,1838227..1838317, 1838478..1838562,1838773..1838857,1840444..1840513, 1841118..1841187,1842674..1842719,1842864..1843113, 1843190..1843395,1843494..1843568,1845016..1845085, 1845308..1845388,1845844..1846078,1846249..1846487) /locus_tag="TCM_012254" /product="Transmembrane Fragile-X-F-associated protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008237001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011872t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008237001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1455t11; inference alignment:Newbler:10:TSA:cgbaB_g01034t00001" CDS join(1835769..1835884,1838227..1838317,1838478..1838562, 1838773..1838857,1840444..1840513,1841118..1841187, 1842674..1842719,1842864..1843113,1843190..1843395, 1843494..1843568,1845016..1845085,1845308..1845388, 1845844..1845923,1846044..1846122) /locus_tag="TCM_012254" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011872t1" /codon_start=1 /product="Transmembrane Fragile-X-F-associated protein isoform 1" /protein_id="EOY20930.1" /db_xref="Phytozome:POPTR_0012s05680.1" /db_xref="TAIR:AT1G18470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LBF1" /translation="MSWRRVLKSVQALVAHSLLFCFTLLLLLKLDHVVSYSWWIIFFP LWMFHGVVVRGRFSLPAPSVPHNRQWAPCHTIVATPLLIAFELLLCIYLESVYVHGFP AVNLKIIFLPLLAFEIIILIDNFRMCRALMPGDDESISDEAIWETLPHFWVAISMVFF VAATIFTLLKLCGDVGALGWWDLFINFGIAESFAFLVCTKWSNPLIHRNSPAREAGPS NTTIRYLDWNGGLVVTPEEDQQQDTICGVQDIGGHIMKIPIIGFQVLLCMRLEGTPAG ARHIPLPILFSPLFLLHGAAVLFSASRLIEKIVLLLQSGAGTGLYFRFSSRAHDCLGF LHHGSRLLGWWSIDEGSREEQARLYHDGVSGYNTFSGYPPEIVKKMPKKDLAEEVWRL QAALGEQTEITKFSQQEYERLQNEKVLCRVCFEREISVVLLPCRHRILCSTCCEKCRK CPICRVCIEERLPVYDV" CDS join(1838249..1838317,1838478..1838562,1838773..1838857, 1840444..1840513,1841118..1841187,1842674..1842719, 1842864..1843113,1843190..1843395,1843494..1843568, 1845016..1845085,1845308..1845388,1845844..1846002) /locus_tag="TCM_012254" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011872t1" /codon_start=1 /product="Transmembrane Fragile-X-F-associated protein isoform 2" /protein_id="EOY20931.1" /db_xref="Phytozome:GSVIVT01008237001" /db_xref="TAIR:AT1G18470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LBF1" /translation="MFHGVVVRGRFSLPAPSVPHNRQWAPCHTIVATPLLIAFELLLC IYLESVYVHGFPAVNLKIIFLPLLAFEIIILIDNFRMCRALMPGDDESISDEAIWETL PHFWVAISMVFFVAATIFTLLKLCGDVGALGWWDLFINFGIAESFAFLVCTKWSNPLI HRNSPAREAGPSNTTIRYLDWNGGLVVTPEEDQQQDTICGVQDIGGHIMKIPIIGFQV LLCMRLEGTPAGARHIPLPILFSPLFLLHGAAVLFSASRLIEKIVLLLQSGAGTGLYF RFSSRAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHDGVSGYNTFSGYPPEIVKKM PKKDLAEEVWRLQAALGEQTEITKFSQQEYERLQNEKVLCRVCFEREISVVLLPCRHR ILCRYNMAILLMPLCFQHVSKWSFILFAP" mobile_element 1845533..1845608 /note="source:CACAO_PIF_E144_scaffold_10 5980 6056" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(1845549..1845624) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5661 5735" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1848755..1864426) /locus_tag="TCM_012256" /note="dbxref CacaoGD:Thecc1EG012256" mRNA complement(join(1848755..1849338,1849507..1849710, 1852064..1852301,1852585..1852725,1852941..1853179, 1858631..1858691,1863938..1864426)) /locus_tag="TCM_012256" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011870t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s03360.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07850t00001" mRNA complement(join(<1849034..1849127,1849234..1849338, 1849507..1849710,1852064..1852301,1852585..1852725, 1852941..1853255)) /locus_tag="TCM_012256" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011870t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s03360.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01855t00002; inference alignment:Newbler:10:TSA:cgbaB_g07850t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc361t9" CDS complement(join(<1849036..1849127,1849234..1849338, 1849507..1849710,1852064..1852301,1852585..1852725, 1852941..1853159)) /locus_tag="TCM_012256" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011870t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /protein_id="EOY20933.1" /db_xref="Phytozome:POPTR_0015s03360.1" /db_xref="TAIR:AT1G75290.1" /translation="MKSTNMNGSSPNVSEETGRTLVVGSGGFMGRFVTEASLDSGRPT YILARSSSNSPSKASTIKFLQDRGATVIYGSITDKEFMEKVLKEHKIEVVISAVGGGS ILDQFNLIEAIRNVDTVKRFLPSEFGHDTDRADPVEPGLTMYEQKRQIRRQIEKSGIP YTYICCNSIAAWPYHDNTHPADVLPPLDRFKIYGDGTVKAYFVAGTDIGKFTIMSIED DRTLNKTVHFQPPSNLLNINEMASLWEEKIGRTLPRVTITEEDLLQMAKEMRIPQSVV AALTHDIFINGCQINFSLDKPTDVEVSTMQYLCQLLSQEHCLSLRYAHEKYLTLSIF" CDS complement(join(1849061..1849338,1849507..1849710, 1852064..1852301,1852585..1852725,1852941..1853159)) /locus_tag="TCM_012256" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011870t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /protein_id="EOY20932.1" /db_xref="Phytozome:POPTR_0015s03360.1" /db_xref="TAIR:AT1G75290.1" /translation="MKSTNMNGSSPNVSEETGRTLVVGSGGFMGRFVTEASLDSGRPT YILARSSSNSPSKASTIKFLQDRGATVIYGSITDKEFMEKVLKEHKIEVVISAVGGGS ILDQFNLIEAIRNVDTVKRFLPSEFGHDTDRADPVEPGLTMYEQKRQIRRQIEKSGIP YTYICCNSIAAWPYHDNTHPADVLPPLDRFKIYGDGTVKAYFVAGTDIGKFTIMSIED DRTLNKTVHFQPPSNLLNINEMASLWEEKIGRTLPRVTITEEDLLQMAKEMRIPQSVV AALTHDIFINGCQINFSLDKPTDVEVCSLYPDTPFRTINECFEDFAKKIIDNAKAVSK PAASNNAIFVPTAKPGALPITAICT" mobile_element 1852793..1852898 /note="source:CACAO_M_E69634_F98_scaffold_9 1986 2080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1854174..1854738) /note="source:CACAO_MITE_S248_scaffold_10 2 579" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(1854619..1854753) /note="source:CACAO_PIF_E31_scaffold_2 4061 4194" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 1859158..1859263 /note="source:scaffold_1_CACTA_0023 6352 6457" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1859487..1860606) /note="source:CACAO_on_E745_scaffold_10 1 1133" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(1860605..1860901) /note="source:scaffold_10_CACTA_0140 5608 5910" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1860866..1861836) /note="source:CACAO_on_E241_scaffold_112 2 970" /mobile_element_type="transposon:TIR/hAT" gene complement(1864500..1865127) /locus_tag="TCM_012259" /note="dbxref CacaoGD:Thecc1EG012259" mRNA complement(1864500..1865127) /locus_tag="TCM_012259" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1032t4" CDS complement(1864515..1864856) /locus_tag="TCM_012259" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20934.1" /translation="MGIPPAPTNWNSPFPSSLPSPPENLGFGLTLLYQLSKLHWKNEE HRHSFANIQIQSQYPPPPSPQKKNNYTHSFCFKLKHYNSENPSLQHTPHAENPTQKKK IPAATEHQNID" gene 1864521..1881481 /locus_tag="TCM_012260" /note="dbxref CacaoGD:Thecc1EG012260" mRNA join(1864521..1864546,1873478..1875235,1875339..1875531, 1878227..1878607,1878703..1878978,1881345..1881481) /locus_tag="TCM_012260" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30174.m008718" /inference="similar to AA sequence:ricco:30174.m008718" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc776t3_C2" gene complement(1870123..1870799) /locus_tag="TCM_012261" /note="dbxref CacaoGD:Thecc1EG012261" mRNA complement(1870123..1870799) /locus_tag="TCM_012261" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.70 coverage" CDS complement(1870227..1870433) /locus_tag="TCM_012261" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20938.1" /translation="MVDVFTSWSVVQKKVVYAFVRYKEEGKQMVTIPDGDGMLIPGRR VMVRNANSFEKKVGRLVTTQSMFQ" mobile_element complement(1871925..1872105) /note="source:INTACT383F_F354_scaffold_3-int 1132 1314" /mobile_element_type="retrotransposon:LTR/Unclassified" mRNA join(1873005..1873222,1873598..1875235,1875339..1875531, 1878227..>1878266) /locus_tag="TCM_012260" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30174.m008718" /inference="similar to AA sequence:ricco:30174.m008718" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc788t2_C1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc776t3_C2" mRNA join(1873098..1873222,1873478..1875235,1875339..1875531, 1878227..1878607,1878703..1879188) /locus_tag="TCM_012260" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30174.m008718" /inference="similar to AA sequence:ricco:30174.m008718" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1029t1; alternateUTRof:Thecc1EG012260t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc776t3_C2" CDS join(1873629..1875235,1875339..1875531,1878227..1878454) /locus_tag="TCM_012260" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30174.m008718" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20935.1" /db_xref="TAIR:AT1G73930.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DFN8" /translation="MSRSPSFSVKPELSVKPDPDSLQRWVVAFCIIRFDLEQGQLIEE CYPPGCLTQEEELEVAFSSFPDSVSQHQNRSSIHDCIFFFRFRRHKNTKQGNVTSSEI TEIDDKDTTSTPKEEKVIRRLRSSGKGSRHLYGYVFNRQRHDERLKRGGEQKSVVILS HGPYSSVFRPLLQIMGPLYFDIGKKAIEHIAGYVSLWPTPVPGKLMELPIGNAMLKVN LPPAHSLPLESGIAYEESASSMAPFLPNNQSVPQGLFHDSDLFGTFKGLLLQLWLLWE LLLIGEPILVIAPTPPQCCEAVASLVSLVAPLLYSVDFRPYFTIHDPEFAQLNSLQEG DKYPPMVLGVTNLFFLKALRNIPHIVSVGSPAPNSSRVALASRSSGRIPGKPEGFGLQ QLSLKKFSPSNLLNAVKLRRDGPLCLMTEHKEAIWSTYAATTKPDTSILNRLIDAGMS PRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRATTPPEGSSPFADPPPLPPFNAD EFLMSLSARGVGKFLSKRMRSNWLDLYRRFLKGPNFLPWFQRRHAVAENEQHRLWRQA RMKTDIHHLISKMPELEVVDCFNAIERHLLGEIQLQQSGRAVADSAAMCQKLKGDLQT VFNLLPKDMQQLLLLNPQRAALLQGNSSPELTKLPGRPSIQVGVISSNSPR" CDS join(1873629..1875235,1875339..1875531,1878227..1878454) /locus_tag="TCM_012260" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30174.m008718" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20936.1" /db_xref="TAIR:AT1G73930.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DFN8" /translation="MSRSPSFSVKPELSVKPDPDSLQRWVVAFCIIRFDLEQGQLIEE CYPPGCLTQEEELEVAFSSFPDSVSQHQNRSSIHDCIFFFRFRRHKNTKQGNVTSSEI TEIDDKDTTSTPKEEKVIRRLRSSGKGSRHLYGYVFNRQRHDERLKRGGEQKSVVILS HGPYSSVFRPLLQIMGPLYFDIGKKAIEHIAGYVSLWPTPVPGKLMELPIGNAMLKVN LPPAHSLPLESGIAYEESASSMAPFLPNNQSVPQGLFHDSDLFGTFKGLLLQLWLLWE LLLIGEPILVIAPTPPQCCEAVASLVSLVAPLLYSVDFRPYFTIHDPEFAQLNSLQEG DKYPPMVLGVTNLFFLKALRNIPHIVSVGSPAPNSSRVALASRSSGRIPGKPEGFGLQ QLSLKKFSPSNLLNAVKLRRDGPLCLMTEHKEAIWSTYAATTKPDTSILNRLIDAGMS PRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRATTPPEGSSPFADPPPLPPFNAD EFLMSLSARGVGKFLSKRMRSNWLDLYRRFLKGPNFLPWFQRRHAVAENEQHRLWRQA RMKTDIHHLISKMPELEVVDCFNAIERHLLGEIQLQQSGRAVADSAAMCQKLKGDLQT VFNLLPKDMQQLLLLNPQRAALLQGNSSPELTKLPGRPSIQVGVISSNSPR" CDS join(1873629..1875235,1875339..1875531,1878227..>1878265) /locus_tag="TCM_012260" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30174.m008718" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY20937.1" /db_xref="TAIR:AT1G73930.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DFN8" /translation="MSRSPSFSVKPELSVKPDPDSLQRWVVAFCIIRFDLEQGQLIEE CYPPGCLTQEEELEVAFSSFPDSVSQHQNRSSIHDCIFFFRFRRHKNTKQGNVTSSEI TEIDDKDTTSTPKEEKVIRRLRSSGKGSRHLYGYVFNRQRHDERLKRGGEQKSVVILS HGPYSSVFRPLLQIMGPLYFDIGKKAIEHIAGYVSLWPTPVPGKLMELPIGNAMLKVN LPPAHSLPLESGIAYEESASSMAPFLPNNQSVPQGLFHDSDLFGTFKGLLLQLWLLWE LLLIGEPILVIAPTPPQCCEAVASLVSLVAPLLYSVDFRPYFTIHDPEFAQLNSLQEG DKYPPMVLGVTNLFFLKALRNIPHIVSVGSPAPNSSRVALASRSSGRIPGKPEGFGLQ QLSLKKFSPSNLLNAVKLRRDGPLCLMTEHKEAIWSTYAATTKPDTSILNRLIDAGMS PRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRATTPPEGSSPFADPPPLPPFNAD EFLMSLSARGVGKFLSKRMRSNWLDLYRRFLKGPNFLPWFQRRHAVAENEQHRLWRQA RMKTDIHHLISKMPELEVVDCFNAIERHLLGEIQLQQSGRAVADSAA" gene 1881338..1882834 /locus_tag="TCM_012262" /note="dbxref CacaoGD:Thecc1EG012262" mRNA join(1881338..1882152,1882332..1882834) /locus_tag="TCM_012262" /product="Duplicated homeodomain-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30174.m008717" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007672t7" /inference="similar to AA sequence:Phytozome:POPTR_0012s05720.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8227t1" CDS join(1881728..1882152,1882332..1882797) /locus_tag="TCM_012262" /note="paralog of Thecc1EG007672t7" /codon_start=1 /product="Duplicated homeodomain-like superfamily protein" /protein_id="EOY20939.1" /db_xref="Phytozome:POPTR_0012s05720.1" /db_xref="TAIR:AT1G49010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9A3" /translation="MAGTGTWSREVEKAFENAIAMHWTEEGSEEQWEKIASMVPSKSL EELKQHYQLLVEDVSAIEAGQVPLPSYTGEEATSSVAKDFHGSSGAAAAAAPDKRSSS GYGNGFSGLSHDSCGHGGKGSSRSDQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSIS RNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDTSHQAPITGQQAN TNSPAAAAAMGPSVKHRAQPHMPGLGMYGAPVGRPVAAPGHMASAVGTPVMLPPGHHH HPPPYIVPVAYPMAPPPMHQ" gene complement(1883146..1893689) /locus_tag="TCM_012263" /note="dbxref CacaoGD:Thecc1EG012263" mRNA complement(join(1883146..1883659,1883864..1884035, 1884414..1884459,1884549..1884631,1885025..1885104, 1886007..1886115,1887261..1887329,1887674..1887724, 1887819..1887944,1888063..1888186,1888920..1888975, 1889101..1889165,1889313..1889388,1889829..1889905, 1891330..1891444,1891577..1891756,1891873..1892143, 1893115..1893689)) /locus_tag="TCM_012263" /product="Histone deacetylase 15 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008242001" /inference="similar to AA sequence:Phytozome:GSVIVT01008242001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1275t4" mRNA complement(join(1883388..1883659,1883864..1884035, 1884414..1884459,1884549..1884631,1885025..1885114, 1886007..1886115,1887261..1887329,1887674..1887724, 1887819..1887944,1888063..1888186,1888920..1888975, 1889101..1889165,1889313..1889388,1889829..1889905, 1891330..1891444,1891577..1891756,1891873..1892038, 1892333..1892502)) /locus_tag="TCM_012263" /product="Histone deacetylase 15 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008242001" /inference="similar to AA sequence:Phytozome:GSVIVT01008242001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc579t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1275t4" mRNA complement(join(1883388..1883659,1883864..1884035, 1884414..1884459,1884549..1884631,1885025..1885075, 1886007..1886115,1887261..1887329,1887674..1887724, 1887819..1887944,1888063..1888186,1888920..1888975, 1889101..1889165,1889313..1889388,1889829..1889905, 1891330..1891444,1891577..1891756,1891873..>1892063)) /locus_tag="TCM_012263" /product="Histone deacetylase 15 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008242001" /inference="similar to AA sequence:Phytozome:GSVIVT01008242001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc579t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1275t4" mRNA complement(join(1883388..1883659,1883864..1883965, 1884414..1884459,1884549..1884631,1885025..1885114, 1886007..1886115,1887261..1887329,1887674..1887724, 1887819..1887944,1888063..1888186,1888920..1888975, 1889101..1889165,1889313..1889388,1889829..1889905, 1891330..1891444,1891577..1891756,1891873..>1892063)) /locus_tag="TCM_012263" /product="Histone deacetylase 15 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008242001" /inference="similar to AA sequence:Phytozome:GSVIVT01008242001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc579t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1275t4" CDS complement(join(1883553..1883659,1883864..1884035, 1884414..1884459,1884549..1884631,1885025..1885104, 1886007..1886115,1887261..1887329,1887674..1887724, 1887819..1887944,1888063..1888186,1888920..1888975, 1889101..1889165,1889313..1889388,1889829..1889905, 1891330..1891444,1891577..1891756,1891873..1892079)) /locus_tag="TCM_012263" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Histone deacetylase 15 isoform 1" /protein_id="EOY20940.1" /db_xref="Phytozome:GSVIVT01008242001" /db_xref="TAIR:AT3G18520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXJ1" /translation="MVSETVQVSCVTNGGAKNNQGFKRKHLGSDENTTACCHDEVSDD KGDIGTSGRDTSTNINDDTQPDGVSKRKRLPKELTFQDMYNNQDAFDDDDEDDSDWEP VQKHLEILKWFCTNCTMVNLDDVVHCDICGEHKESGILKHGFYASPCSPELDLIQVES EARERDKDLRFEASASNCSTAVGFDERMLLHSEVEMKSHPHPERPDRLRAIAASLAVA GIFPGKCYPIPAREITQEELRRVHSLEHIETVELTSQILSSYFTPDTYANEHSAYAAR LAAGLCANLASAIFSGRVRNGFALVRPPGHHAGVTQAMGFCLHNNAAVAALAAQAAGA KKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGKFYPGTGAAFEVGSKGAEGYC VNIPWSRGGVGDNDYIFAFQHVVLPIASKFSPDFTIISAGFDAARGDPLGCCDVTPAG YAQMTHMLSALSGGRLLVILEGGYNLRSISSSATAVIKVLLGESSGYEPENIVPSKSG LHTVLEVLKIQMKYWPPLSSSYEKLQSQWGMYSMENKKKQVKKRRLFEPPLWWRWGRK QLLYHILTGHFHLK" misc_feature complement(join(1884549..1884631,1885025..1885941)) /locus_tag="TCM_012263" /note="Gene fragment of Thecc1EG012263t1; dbxref gnl|CacaoGD|Thecc1EG012263t1; quality class is mediumpartial-partof is thecc1eg012263t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1895t1; dbxref CacaoGD:Thecc1EG012264t1" CDS complement(join(1885059..1885075,1886007..1886115, 1887261..1887329,1887674..1887724,1887819..1887944, 1888063..1888186,1888920..1888975,1889101..1889165, 1889313..1889388,1889829..1889905,1891330..1891444, 1891577..1891756,1891873..>1892061)) /locus_tag="TCM_012263" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Histone deacetylase 15 isoform 3" /protein_id="EOY20942.1" /db_xref="Phytozome:GSVIVT01008242001" /db_xref="TAIR:AT3G18520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXJ1" /translation="QVSCVTNGGAKNNQGFKRKHLGSDENTTACCHDEVSDDKGDIGT SGRDTSTNINDDTQPDGVSKRKRLPKELTFQDMYNNQDAFDDDDEDDSDWEPVQKHLE ILKWFCTNCTMVNLDDVVHCDICGEHKESGILKHGFYASPCSPELDLIQVESEARERD KDLRFEASASNCSTAVGFDERMLLHSEVEMKSHPHPERPDRLRAIAASLAVAGIFPGK CYPIPAREITQEELRRVHSLEHIETVELTSQILSSYFTPDTYANEHSAYAARLAAGLC ANLASAIFSGRVRNGFALVRPPGHHAGVTQAMGFCLHNNAAVAALAAQAAGAKKVLIV DWDVHHGNGTQEIFEQNKSVLYISLHRHEGGKFYPGTGAAFEVGSKGAEGYCVNIPWS RGGVGDNDYIFAFQHVVLPIDISRI" CDS complement(join(1885086..1885114,1886007..1886115, 1887261..1887329,1887674..1887724,1887819..1887944, 1888063..1888186,1888920..1888975,1889101..1889165, 1889313..1889388,1889829..1889905,1891330..1891444, 1891577..1891756,1891873..1892038,1892333..1892340)) /locus_tag="TCM_012263" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Histone deacetylase 15 isoform 2" /protein_id="EOY20941.1" /db_xref="Phytozome:GSVIVT01008242001" /db_xref="TAIR:AT3G18520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXJ1" /translation="MFSGAKNNQGFKRKHLGSDENTTACCHDEVSDDKGDIGTSGRDT STNINDDTQPDGVSKRKRLPKELTFQDMYNNQDAFDDDDEDDSDWEPVQKHLEILKWF CTNCTMVNLDDVVHCDICGEHKESGILKHGFYASPCSPELDLIQVESEARERDKDLRF EASASNCSTAVGFDERMLLHSEVEMKSHPHPERPDRLRAIAASLAVAGIFPGKCYPIP AREITQEELRRVHSLEHIETVELTSQILSSYFTPDTYANEHSAYAARLAAGLCANLAS AIFSGRVRNGFALVRPPGHHAGVTQAMGFCLHNNAAVAALAAQAAGAKKVLIVDWDVH HGNGTQEIFEQNKSVLYISLHRHEGGKFYPGTGAAFEVGSKGAEGYCVNIPWSRGGVG DNDYIFAFQHVVLPIANCSFQVFS" CDS complement(join(1885086..1885114,1886007..1886115, 1887261..1887329,1887674..1887724,1887819..1887944, 1888063..1888186,1888920..1888975,1889101..1889165, 1889313..1889388,1889829..1889905,1891330..1891444, 1891577..1891756,1891873..>1892061)) /locus_tag="TCM_012263" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Histone deacetylase 15 isoform 4" /protein_id="EOY20943.1" /db_xref="Phytozome:GSVIVT01008242001" /db_xref="TAIR:AT3G18520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXJ1" /translation="QVSCVTNGGAKNNQGFKRKHLGSDENTTACCHDEVSDDKGDIGT SGRDTSTNINDDTQPDGVSKRKRLPKELTFQDMYNNQDAFDDDDEDDSDWEPVQKHLE ILKWFCTNCTMVNLDDVVHCDICGEHKESGILKHGFYASPCSPELDLIQVESEARERD KDLRFEASASNCSTAVGFDERMLLHSEVEMKSHPHPERPDRLRAIAASLAVAGIFPGK CYPIPAREITQEELRRVHSLEHIETVELTSQILSSYFTPDTYANEHSAYAARLAAGLC ANLASAIFSGRVRNGFALVRPPGHHAGVTQAMGFCLHNNAAVAALAAQAAGAKKVLIV DWDVHHGNGTQEIFEQNKSVLYISLHRHEGGKFYPGTGAAFEVGSKGAEGYCVNIPWS RGGVGDNDYIFAFQHVVLPIANCSFQVFS" mobile_element 1893606..1893775 /note="source:scaffold_1_CACTA_0008 14056 14217" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1893607..1893717) /note="source:scaffold_9_CACTA_0942 5247 5361" /mobile_element_type="transposon:TIR/CACTA" gene 1894308..1899105 /locus_tag="TCM_012266" /note="dbxref CacaoGD:Thecc1EG012266" mRNA join(1894308..1894501,1894600..1894718,1894945..1895124, 1895376..1895432,1895960..1896024,1896984..1897623, 1898785..1899105) /locus_tag="TCM_012266" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013394001" /inference="similar to AA sequence:Phytozome:GSVIVT01013394001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1524t3" mRNA join(1894308..1894501,1894600..1894718,1894945..1895124, 1895376..1895432,1895960..1896024,1897049..1897496) /locus_tag="TCM_012266" /product="Pentatricopeptide repeat superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013394001" /inference="similar to AA sequence:Phytozome:GSVIVT01013394001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1519t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1524t3" mRNA join(1894308..1894501,1894600..1894718,1894945..1895124, 1895376..1895432,1896984..1897496) /locus_tag="TCM_012266" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013394001" /inference="similar to AA sequence:Phytozome:GSVIVT01013394001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1519t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1524t3" CDS join(1894370..1894501,1894600..1894718,1894945..1895124, 1895376..1895432,1895960..1896024,1897049..1897134) /locus_tag="TCM_012266" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 2" /protein_id="EOY20945.1" /db_xref="Phytozome:GSVIVT01013394001" /db_xref="TAIR:AT5G43822.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NPG7" /translation="MEAMIKKYQQKFRKAKDDLSKWDELQSRLISQFSNASSIIDRLQ VIQNSKNYASLNSVQGIEVAVLQKQMDSLQTILLLMKNTMEEFRAVVLSLDKLQRDGK QLAQGGSNQMNRKQLQQRIGVKPSLKNCMDGLMLLHEMHLAEYLLKSSLVSALSVLAL RPNSSDLHALQQLLVDQPNIVKEEDNLGFPDFVEVLGRLKPLGFVNMLVPCC" CDS join(1894370..1894501,1894600..1894718,1894945..1895124, 1895376..1895432,1895960..1896024,1896984..1897027) /locus_tag="TCM_012266" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1" /protein_id="EOY20944.1" /db_xref="Phytozome:GSVIVT01013394001" /db_xref="TAIR:AT5G43822.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NPG7" /translation="MEAMIKKYQQKFRKAKDDLSKWDELQSRLISQFSNASSIIDRLQ VIQNSKNYASLNSVQGIEVAVLQKQMDSLQTILLLMKNTMEEFRAVVLSLDKLQRDGK QLAQGGSNQMNRKQLQQRIGVKPSLKNCMDGLMLLHEMHLAEYLLKSSLVSALSVLAL RPNSSDLHALQQLLVDQPNIVKEEVQYILDIIFAEEIC" CDS join(1894370..1894501,1894600..1894718,1894945..1895124, 1895376..1895432,1896984..1896999) /locus_tag="TCM_012266" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 3" /protein_id="EOY20946.1" /db_xref="Phytozome:GSVIVT01013394001" /db_xref="TAIR:AT5G43822.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NPG7" /translation="MEAMIKKYQQKFRKAKDDLSKWDELQSRLISQFSNASSIIDRLQ VIQNSKNYASLNSVQGIEVAVLQKQMDSLQTILLLMKNTMEEFRAVVLSLDKLQRDGK QLAQGGSNQMNRKQLQQRIGVKPSLKNCMDGLMLLHEMHLAEYLLKSSLVSALSVLAL RPNTIHP" mobile_element 1899980..1900102 /note="source:scaffold_1_CACTA_0008 14071 14182" /mobile_element_type="transposon:TIR/CACTA" gene complement(1904500..1906382) /locus_tag="TCM_012267" /note="dbxref CacaoGD:Thecc1EG012267" mRNA complement(join(1904500..1905514,1906257..1906382)) /locus_tag="TCM_012267" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.30 coverage" CDS complement(join(1905343..1905514,1906257..1906345)) /locus_tag="TCM_012267" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20947.1" /translation="MCCKSFHICSVLAVPSRRRWAGSDPFRKFLTVHVSLAPKRDAIN EAKGVGKGSGNCFAPPSLIYQRMENDRKLHHSKERSKAPQQK" gene complement(1909176..1910879) /locus_tag="TCM_012268" /note="dbxref CacaoGD:Thecc1EG012268" mRNA complement(join(1909176..1909512,1910302..1910395, 1910499..1910661,1910747..1910879)) /locus_tag="TCM_012268" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30174.m008715" /inference="similar to AA sequence:Phytozome:GSVIVT01008244001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1008t1" CDS complement(join(1909269..1909512,1910302..1910395, 1910499..1910661,1910747..1910806)) /locus_tag="TCM_012268" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20948.1" /db_xref="Phytozome:GSVIVT01008244001" /db_xref="TAIR:AT1G61415.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIV8" /translation="MEDSGAILYQISCLKDMLDQVNEEIEANIQITRELESEIVKLTE IEAALAIRESQLVKSLYISHFEVDGLLSVTADSRNSLKLLEEELTCLRAKRDEMLKRM ENKREGFIKLCLEFQREIGNGENNEVVTFLLEKELLENEIHLLDKKNNALRNSMSAFE EEILEELDTSNAGKAILFFSVLVSNS" mobile_element complement(1911210..1911664) /note="source:CACAO_on_E35_A_scaffold_3 270 723" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(1911679..1911838) /note="source:CACAO_on_E35_A_scaffold_3 4 161" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 1911884..1912602 /locus_tag="TCM_012269" /note="dbxref CacaoGD:Thecc1EG012269" mRNA join(1911884..1912408,1912519..1912602) /locus_tag="TCM_012269" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc405t4" gene complement(1912004..1920074) /locus_tag="TCM_012270" /note="dbxref CacaoGD:Thecc1EG012270" mRNA complement(join(1912004..1912906,1913617..1913713, 1913797..1913950,1915198..1915286,1915377..1915575, 1915664..1915754,1915861..1916058,1916143..1916285, 1917823..1918350,1918704..1918869,1918983..1919069, 1919319..1919416,1919551..1920004)) /locus_tag="TCM_012270" /product="Zinc-finger domain of monoamine-oxidase A repressor R1 protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008246001" /inference="similar to AA sequence:Phytozome:GSVIVT01008246001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04451t00001" CDS join(1912152..1912408,1912519..1912522) /locus_tag="TCM_012269" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20949.1" /translation="MVGFCLASAPFFLHFTCFPLPSYLPSLHFWLEKFLSKSASSLPP QHIFHSHYHPISFVGQIHGPDHLFNLIASPFYLHSLFTSNFG" mRNA complement(join(1912379..1912408,1912519..1912906, 1913617..1913713,1913797..1913903,1915663..1915754, 1915861..1916058,1916143..1916285,1917823..1918350, 1918704..1918869,1918983..1919069,1919319..1919416, 1919551..1920074)) /locus_tag="TCM_012270" /product="Zinc-finger domain of monoamine-oxidase A repressor R1 protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008246001" /inference="similar to AA sequence:Phytozome:GSVIVT01008246001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc422t9; inference alignment:Newbler:10:TSA:cgbaP2_g04451t00001" mRNA complement(join(1912383..1912408,1912519..1912906, 1913617..1913713,1913797..1913916,1915377..1915575, 1915664..1915754,1915861..1916058,1916143..1916285, 1917823..1918350,1918704..1918869,1918983..1919069, 1919319..1920074)) /locus_tag="TCM_012270" /product="Zinc-finger domain of monoamine-oxidase A repressor R1 protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008246001" /inference="similar to AA sequence:Phytozome:GSVIVT01008246001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc420t1; inference alignment:Newbler:10:TSA:cgbaP2_g04451t00001" CDS complement(join(1912891..1912906,1913617..1913713, 1913797..1913950,1915198..1915286,1915377..1915575, 1915664..1915754,1915861..1916058,1916143..1916285, 1917823..1918350,1918704..1918869,1918983..1919069, 1919319..1919416,1919551..1919757)) /locus_tag="TCM_012270" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zinc-finger domain of monoamine-oxidase A repressor R1 protein, putative isoform 1" /protein_id="EOY20950.1" /db_xref="Phytozome:GSVIVT01008246001" /db_xref="TAIR:AT5G38690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIV9" /translation="MAVSPSSSKKKKKQQSSNSKPRTKTARTTDSGSSTHPQHSPKGR RNKSPGVRLVHGRIYDSENGKTCHQCRQKTMDFAASCKRKIEAKQCTIHFCHKCLLNR YGERAEEVALLNDWTCPRCRGICNCSFCMKKRGHQPTGNLVHAAKANGFASVSDMLHL KNSESSGSQETTDAAVSSKKRKAGDKESGVKKPSKSQKGSSFKGPNGSTQANDERTAT RNTKLTRSRNKNSSKEISSEGNYGDFSTQKINPKKYQISQDSYKGEVICKGNDAIQLI DMMLHKKCDHGEDEVLNNADPVAKNKPTSKSPNRKKKNVKVKSKTSDAEILLPQGISL NSIAAIDLPVEDIGHALQFLEFCEAFGKVLNMRKGQSQLLLRELVTGKSKRRHSHSSI VQFHIQLLSVMLKDSVKEYPWLNQNLSENSWLQVLREYISDSRYSLKQQLLDCLDLCG DGYERLDSSKKLRLLNFLCDEALGTIDFRSWIDEEYSKFVEKEKKAKEELLARREKER NLEKEMKRKLQDEIAKAILMKNGAPLTISENEDLVSKIKLEVAQTLEVAHTLASALEM SEMVLEELIIQKEQTHFLSVQSQPLRILQHSRQKLVLMYFTLQLMLKDDWRSDAVRSE PIFWDGRGHKFQKFWRLRGYSGETDILLQDIEGRDLVTAKERWYTYSTEQKAIVDNYI SSFRMQRK" CDS complement(join(1912891..1912906,1913617..1913713, 1913797..1913916,1915377..1915575,1915664..1915754, 1915861..1916058,1916143..1916285,1917823..1918350, 1918704..1918869,1918983..1919069,1919319..1919401)) /locus_tag="TCM_012270" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Zinc-finger domain of monoamine-oxidase A repressor R1 protein, putative isoform 2" /protein_id="EOY20951.1" /db_xref="Phytozome:GSVIVT01008246001" /db_xref="TAIR:AT5G38690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIV9" /translation="MDFAASCKRKIEAKQCTIHFCHKCLLNRYGERAEEVALLNDWTC PRCRGICNCSFCMKKRGHQPTGNLVHAAKANGFASVSDMLHLKNSESSGSQETTDAAV SSKKRKAGDKESGVKKPSKSQKGSSFKGPNGSTQANDERTATRNTKLTRSRNKNSSKE ISSEGNYGDFSTQKINPKKYQISQDSYKGEVICKGNDAIQLIDMMLHKKCDHGEDEVL NNADPVAKNKPTSKSPNRKKKNVKVKSKTSDAEILLPQGISLNSIAAIDLPVEDIGHA LQFLEFCEAFGKVLNMRKGQSQLLLRELVTGKSKRRHSHSSIVQFHIQLLSVMLKDSV KEYPWLNQNLSENSWLQVLREYISDSRYSLKQQLLDCLDLCGDGYERLDSSKKLRLLN FLCDEALGTIDFRSWIDEEYSKFVEKEKKAKEELLARREKERNLEKEMKRKLQDEIAK AILMKNGAPLTISENEDLVSKIKLEVAQTLEVAHTLASALEMSEMVLEDDWRSDAVRS EPIFWDGRGHKFQKFWRLRGYSGETDILLQDIEGRDLVTAKERWYTYSTEQKAIVDNY ISSFRMQRK" mRNA complement(join(1913616..1913916,1915377..1915575, 1915664..1915754,1915861..1916058,1916143..1916285, 1917823..1918350,1918704..1918869,1918983..1919069, 1919319..1919416,1919551..1920074)) /locus_tag="TCM_012270" /product="Zinc-finger domain of monoamine-oxidase A repressor R1 protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008246001" /inference="similar to AA sequence:Phytozome:GSVIVT01008246001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc405t2; inference alignment:Newbler:10:TSA:cgbaP2_g04451t00001" CDS complement(join(1913693..1913916,1915377..1915575, 1915664..1915754,1915861..1916058,1916143..1916285, 1917823..1918350,1918704..1918869,1918983..1919069, 1919319..1919416,1919551..1919757)) /locus_tag="TCM_012270" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Zinc-finger domain of monoamine-oxidase A repressor R1 protein, putative isoform 3" /protein_id="EOY20952.1" /db_xref="Phytozome:GSVIVT01008246001" /db_xref="TAIR:AT5G38690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIV9" /translation="MAVSPSSSKKKKKQQSSNSKPRTKTARTTDSGSSTHPQHSPKGR RNKSPGVRLVHGRIYDSENGKTCHQCRQKTMDFAASCKRKIEAKQCTIHFCHKCLLNR YGERAEEVALLNDWTCPRCRGICNCSFCMKKRGHQPTGNLVHAAKANGFASVSDMLHL KNSESSGSQETTDAAVSSKKRKAGDKESGVKKPSKSQKGSSFKGPNGSTQANDERTAT RNTKLTRSRNKNSSKEISSEGNYGDFSTQKINPKKYQISQDSYKGEVICKGNDAIQLI DMMLHKKCDHGEDEVLNNADPVAKNKPTSKSPNRKKKNVKVKSKTSDAEILLPQGISL NSIAAIDLPVEDIGHALQFLEFCEAFGKVLNMRKGQSQLLLRELVTGKSKRRHSHSSI VQFHIQLLSVMLKDSVKEYPWLNQNLSENSWLQVLREYISDSRYSLKQQLLDCLDLCG DGYERLDSSKKLRLLNFLCDEALGTIDFRSWIDEEYSKFVEKEKKAKEELLARREKER NLEKEMKRKLQDEIAKAILMKNGAPLTISENEDLVSKIKLEVAQTLEVAHTLASALEM SEMVLEDDWRSDAVRSEPIFWDGRGHKFQKFWRLRGYSGETDILLQGLSFNYPKFEFL RLINRTAISFVSLIVQILRGEI" CDS complement(join(1913833..1913903,1915663..1915754, 1915861..1916058,1916143..1916285,1917823..1918350, 1918704..1918869,1918983..1919069,1919319..1919416, 1919551..1919757)) /locus_tag="TCM_012270" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Zinc-finger domain of monoamine-oxidase A repressor R1 protein, putative isoform 4" /protein_id="EOY20953.1" /db_xref="Phytozome:GSVIVT01008246001" /db_xref="TAIR:AT5G38690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIV9" /translation="MAVSPSSSKKKKKQQSSNSKPRTKTARTTDSGSSTHPQHSPKGR RNKSPGVRLVHGRIYDSENGKTCHQCRQKTMDFAASCKRKIEAKQCTIHFCHKCLLNR YGERAEEVALLNDWTCPRCRGICNCSFCMKKRGHQPTGNLVHAAKANGFASVSDMLHL KNSESSGSQETTDAAVSSKKRKAGDKESGVKKPSKSQKGSSFKGPNGSTQANDERTAT RNTKLTRSRNKNSSKEISSEGNYGDFSTQKINPKKYQISQDSYKGEVICKGNDAIQLI DMMLHKKCDHGEDEVLNNADPVAKNKPTSKSPNRKKKNVKVKSKTSDAEILLPQGISL NSIAAIDLPVEDIGHALQFLEFCEAFGKVLNMRKGQSQLLLRELVTGKSKRRHSHSSI VQFHIQLLSVMLKDSVKEYPWLNQNLSENSWLQVLREYISDSRYSLKQQLLDCLDLCG DGYERLDSSKKLRLLNFLCDEALGTIDFRSWIDEEYSKFVEKEKKAKEELLARREKEM LLDLSQYFGMAVVINFKSSGD" gene complement(1920261..1922949) /locus_tag="TCM_012272" /note="dbxref CacaoGD:Thecc1EG012272" mRNA complement(join(1920261..1920348,1920513..1920994, 1922277..1922371,1922469..1922949)) /locus_tag="TCM_012272" /product="ATP-dependent helicase/nuclease subunit A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g15710.1" /inference="similar to AA sequence:ricco:30174.m008714" /note="transcript variant 1; alternatively spliced; quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1927t2_C1" mRNA complement(join(1920692..1920994,1921455..1921539, 1922277..1922371,1922469..>1922704)) /locus_tag="TCM_012272" /product="ATP-dependent helicase/nuclease subunit A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g15710.1" /inference="similar to AA sequence:ricco:30174.m008714" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1927t2_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1927t2_C1" mobile_element complement(1921103..1921160) /note="source:CACAO_M_E57091_F309_scaffold_8 2190 2245" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(1922288..1922371,1922469..1922741)) /locus_tag="TCM_012272" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30174.m008714" /codon_start=1 /product="ATP-dependent helicase/nuclease subunit A isoform 1" /protein_id="EOY20954.1" /translation="MSSSGCVNLKSTKTVSFSASEKIQNLLKQTGCCCCCCCIRFLDR KNWKIKKSERKMAMNSVKWGYVRIITGTILGGVLGFYVMHRVEVSYKEKMKERLRQYE TELKKKEKLNELEDSI" CDS complement(join(1922288..1922371,1922469..>1922702)) /locus_tag="TCM_012272" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30174.m008714" /codon_start=1 /product="ATP-dependent helicase/nuclease subunit A isoform 2" /protein_id="EOY20955.1" /translation="TVSFSASEKIQNLLKQTGCCCCCCCIRFLDRKNWKIKKSERKMA MNSVKWGYVRIITGTILGGVLGFYVMHRVEVSYKEKMKERLRQYETELKKKEKLNELE DSI" gene complement(1923474..1930407) /locus_tag="TCM_012274" /note="dbxref CacaoGD:Thecc1EG012274" mRNA complement(join(1923474..1924979,1925310..1925385, 1925473..1925525,1926850..1926906,1926988..1927056, 1927153..1927436,1927545..1927941,1928837..1929010, 1930018..1930407)) /locus_tag="TCM_012274" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05750.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s05750.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1125t2" mRNA complement(join(1923615..1924979,1925310..1925385, 1925473..1925525,1926850..1926906,1926988..1927056, 1927153..1927436,1927545..1927941,1930018..1930259)) /locus_tag="TCM_012274" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05750.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s05750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc581t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1125t2; inference alignment:Newbler:10:TSA:cgbaB_g01701t00001" mRNA complement(join(1923615..1924979,1925310..1925385, 1925473..1925525,1926850..1926906,1926988..1927056, 1927153..1927918)) /locus_tag="TCM_012274" /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05750.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s05750.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc581t2; inference alignment:Newbler:10:TSA:cgbaB_g01701t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1125t2" CDS complement(join(1924043..1924979,1925310..1925385, 1925473..1925525,1926850..1926906,1926988..1927056, 1927153..1927436,1927545..1927941,1930018..1930058)) /locus_tag="TCM_012274" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY20957.1" /db_xref="Phytozome:POPTR_0012s05750.1" /db_xref="TAIR:AT1G73920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2Q8" /translation="MQRLVDNALAVTKDGVSSFNQFIHELSVDSDTSSIDYSSGEDDL DGVYPASPSSYGSRISRTSTRIKNDWHWTDWMAFIFSWILLPARFLLGIPFLLFRLLN IWGPRASSDPGSPRPRHFHSFRKVHTPKDHVVHRTTDKRRGVIEDLHLAIEIFIEAIF DMFHKAAHYVLSPFEAFSIFVKWLSCPSVGVKDFKDDVINASVPTATLGDNDPAPRER NLTLHHSLNTDARTCKDVITELGYPYEAIHVITADGYVLLLERIPRRDAWKAVYLQHG ILDSSMGWVSNGIVGSPAFAAFDQGYDVYLGNFRGLVSREHVDKNISSRQYWRYSINE HGTEDIPAMIEKIHEVKTAELKISQPDEETNDEQPYKLCAISHSMGGAGMLMYVITRR IEEKPHRLSRLVLLSPAGFHDDSTFVFTMMEYLFLLLAPILPLLVPAFYIPTRFFRML LNKLARDFHNYPAVGGLVQTLMSYFVGGDSSNWIGVLGLPHYNMNDMPGVSFRVAHHL AQIKHTGKFRMYDYGSTSANMEVYGSPEPLDLGEYYGLIDIPVDLVAGRKDQVIRPRM VRKHYKLMKGSGVDVSYSEFEYAHLDFTFSHHEELLAYVMSRLLLVEPAPKRQSGQKA LRLKRKDWRTLNC" CDS complement(join(1924043..1924979,1925310..1925385, 1925473..1925525,1926850..1926906,1926988..1927056, 1927153..1927436,1927545..1927941,1928837..1929010, 1930018..1930058)) /locus_tag="TCM_012274" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY20956.1" /db_xref="Phytozome:POPTR_0012s05750.1" /db_xref="TAIR:AT1G73920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2Q8" /translation="MQRLVDNALAVTKESVKTFTYESLNNIARLINGVSALLLTILPG KANILEGVQGWELRPTFRGPRFPRWMGNGVSSFNQFIHELSVDSDTSSIDYSSGEDDL DGVYPASPSSYGSRISRTSTRIKNDWHWTDWMAFIFSWILLPARFLLGIPFLLFRLLN IWGPRASSDPGSPRPRHFHSFRKVHTPKDHVVHRTTDKRRGVIEDLHLAIEIFIEAIF DMFHKAAHYVLSPFEAFSIFVKWLSCPSVGVKDFKDDVINASVPTATLGDNDPAPRER NLTLHHSLNTDARTCKDVITELGYPYEAIHVITADGYVLLLERIPRRDAWKAVYLQHG ILDSSMGWVSNGIVGSPAFAAFDQGYDVYLGNFRGLVSREHVDKNISSRQYWRYSINE HGTEDIPAMIEKIHEVKTAELKISQPDEETNDEQPYKLCAISHSMGGAGMLMYVITRR IEEKPHRLSRLVLLSPAGFHDDSTFVFTMMEYLFLLLAPILPLLVPAFYIPTRFFRML LNKLARDFHNYPAVGGLVQTLMSYFVGGDSSNWIGVLGLPHYNMNDMPGVSFRVAHHL AQIKHTGKFRMYDYGSTSANMEVYGSPEPLDLGEYYGLIDIPVDLVAGRKDQVIRPRM VRKHYKLMKGSGVDVSYSEFEYAHLDFTFSHHEELLAYVMSRLLLVEPAPKRQSGQKA LRLKRKDWRTLNC" CDS complement(join(1924043..1924979,1925310..1925385, 1925473..1925525,1926850..1926906,1926988..1927056, 1927153..1927391)) /locus_tag="TCM_012274" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /protein_id="EOY20958.1" /db_xref="Phytozome:POPTR_0012s05750.1" /db_xref="TAIR:AT1G73920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2Q8" /translation="MFHKAAHYVLSPFEAFSIFVKWLSCPSVGVKDFKDDVINASVPT ATLGDNDPAPRERNLTLHHSLNTDARTCKDVITELGYPYEAIHVITADGYVLLLERIP RRDAWKAVYLQHGILDSSMGWVSNGIVGSPAFAAFDQGYDVYLGNFRGLVSREHVDKN ISSRQYWRYSINEHGTEDIPAMIEKIHEVKTAELKISQPDEETNDEQPYKLCAISHSM GGAGMLMYVITRRIEEKPHRLSRLVLLSPAGFHDDSTFVFTMMEYLFLLLAPILPLLV PAFYIPTRFFRMLLNKLARDFHNYPAVGGLVQTLMSYFVGGDSSNWIGVLGLPHYNMN DMPGVSFRVAHHLAQIKHTGKFRMYDYGSTSANMEVYGSPEPLDLGEYYGLIDIPVDL VAGRKDQVIRPRMVRKHYKLMKGSGVDVSYSEFEYAHLDFTFSHHEELLAYVMSRLLL VEPAPKRQSGQKALRLKRKDWRTLNC" gene 1931534..1932527 /locus_tag="TCM_012275" /note="dbxref CacaoGD:Thecc1EG012275" mRNA 1931534..1932527 /locus_tag="TCM_012275" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage" CDS 1931835..1932131 /locus_tag="TCM_012275" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20959.1" /translation="MESLKSSHISTDFILKNHFTEKNKIKYSQLNQDSKKTLIKIPIK HSNKQTEKKRKKYKRKVSKKSVLCFFSVLNFFIFRSRNFREVLEKRVRLNDRLA" mobile_element complement(1933555..1934563) /note="source:CACAO_PIF_E144_scaffold_10 1247 2129" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(1934565..1934983) /note="source:CACAO_on_E717_scaffold_9 2 421" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(1934984..1935030) /note="source:CACAO_PIF_E144_scaffold_10 1203 1249" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(1935020..1936303) /locus_tag="TCM_012276" /note="dbxref CacaoGD:Thecc1EG012276" mRNA complement(join(1935020..1935543,1935679..1935781, 1935880..1936303)) /locus_tag="TCM_012276" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1020t1" CDS complement(join(1935295..1935543,1935679..1935756)) /locus_tag="TCM_012276" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20960.1" /translation="MLGAEFSAGSENAEFAMSIQAKATYPYKGASVMKTLIGNTDTPS KVCPFPRVNVAVKRRSSVPVRTVVIHGLAPCVSICSSHHSQQKQTTNTPRLIAEREAM AMASLK" gene 1935994..1936364 /locus_tag="TCM_012277" /note="dbxref CacaoGD:Thecc1EG012277" mRNA 1935994..1936364 /locus_tag="TCM_012277" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5185t1_C2" CDS 1936023..1936250 /locus_tag="TCM_012277" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20961.1" /translation="MAAPHAAGVAALLKAVHPEWIRPAAIRSALMMKVTTAYRIDNNG TNIMDQSTGLGATPLHGGSQVTLIQIRLQTL" gene complement(1936463..1942262) /locus_tag="TCM_012278" /note="dbxref CacaoGD:Thecc1EG012278" mRNA complement(join(1936463..1937133,1937564..1937648, 1937745..1937830,1937951..1938062,1938774..1938886, 1939016..1939048,1939147..1939239,1939936..1940022, 1940863..1940944,1941035..1941087,1941184..1941249, 1941334..1941497,1941731..1942262)) /locus_tag="TCM_012278" /product="DNAse I-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008252001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012331t2" /inference="similar to AA sequence:Phytozome:GSVIVT01008252001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01007t00002" mRNA complement(join(1936635..1937133,1937564..1937648, 1937741..1937830,1937951..1938062,1938774..1938886, 1939016..1939051,1939147..1939239,1939936..1940022, 1940863..1940944,1941035..1941087,1941184..1941249, 1941334..1941497,1941731..>1941816)) /locus_tag="TCM_012278" /product="DNAse I-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008252001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012331t4" /inference="similar to AA sequence:Phytozome:Glyma05g35240.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1023t1; inference alignment:Newbler:10:TSA:cgbaL_g01007t00002" CDS complement(join(1936996..1937133,1937564..1937648, 1937745..1937830,1937951..1938062,1938774..1938886, 1939016..1939048,1939147..1939239,1939936..1940022, 1940863..1940944,1941035..1941087,1941184..1941249, 1941334..1941497,1941731..1942058)) /locus_tag="TCM_012278" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012331t2" /codon_start=1 /product="DNAse I-like superfamily protein, putative isoform 1" /protein_id="EOY20962.1" /db_xref="Phytozome:GSVIVT01008252001" /db_xref="TAIR:AT3G18500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RE30" /translation="MGCDACSWLRPRVPMTMAAPTLGQPLPEPIFFYSPLSSSFKRAT AISCSMAGHTNSSSSSSSTGSYSRRWYNPSRRWYNPSRRQPPSSYDTSSEILRHWVEV QQPLASQDRFTVASYNILGDRNASKHKDLYITVPSDYLRWGYRKRVLCEELMGWNPDI ICMQEVDKYFDLRNTMKKAGYVGSYKRRTGGNVDGCATFWKPDKFRLLERESIEFKGF GLRDNVAQLSVFEICRVESRRLVIGNIHVLYNPSRGEVKLGQIRFLSTRAQMLSNRWG NVPVVLGGDFNSTPQSAIYKFLSTSELDIKLYNRKELSGQRSCHPSQVLGVNRESRSP FTIMDGFLNDCWTDEEVRVATGSADSHLVVHPLKLSSSYATVKGSTNTRDFNGEPLAT SYHSKFLGTVDYLWYSEGILPTRVLDTLPIDILRRTGGLPCKKLGSDHLALVTEFAFS KSAKDTILTMSAVSDGAISAYREDVGVPA" CDS complement(join(1937622..1937648,1937741..1937830, 1937951..1938062,1938774..1938886,1939016..1939051, 1939147..1939239,1939936..1940022,1940863..1940944, 1941035..1941087,1941184..1941249,1941334..1941497, 1941731..>1941815)) /locus_tag="TCM_012278" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012331t4" /codon_start=1 /product="DNAse I-like superfamily protein, putative isoform 2" /protein_id="EOY20963.1" /db_xref="Phytozome:Glyma05g35240.1" /db_xref="TAIR:AT3G18500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RE30" /translation="RRQPPSSYDTSSEILRHWVEVQQPLASQDRFTVASYNILGDRNA SKHKDLYITVPSDYLRWGYRKRVLCEELMGWNPDIICMQEVDKYFDLRNTMKKAGYVG SYKRRTGGNVDGCATFWKPDKFRLLERESIEFKGFGLRDNVAQLSVFEICRVESRRLV IGNIHVLYNPSRGEVKLGQIRFLSTRAQMLSNRWGNVPVVLGGDFNSTPQQSAIYKFL STSELDIKLYNRKELSGQRSCHPSQVLGVNRESRSPFTIMDGFLNDCWTDEEVRVATG SADSHLVVHPLKLSSSYATVKGSTNTRDFNGEPLATSYHSKFLGTVDYLWYVLRGYST Y" mobile_element complement(1939705..1939762) /note="source:CACAO_M_E47_F305_scaffold_1 1283 1341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1942526..1942622) /note="source:INTACT433_F212_scaffold_1-int 3060 3152" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1942861..1943110) /note="source:scaffold_3_CACTA_0377 4974 5253" /mobile_element_type="transposon:TIR/CACTA" gene 1944679..1947438 /locus_tag="TCM_012279" /note="dbxref CacaoGD:Thecc1EG012279" mRNA join(1944679..1944969,1945071..1945155,1945696..1945763, 1945879..1945929,1946005..1946078,1946578..1946636, 1946723..1946799,1946901..1947438) /locus_tag="TCM_012279" /product="Peptidyl-tRNA hydrolase family protein" /inference="alignment:exonerate- protein:2:ricco:30174.m008706" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024176t2" /inference="similar to AA sequence:Phytozome:GSVIVT01008257001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1027t6" CDS join(1944679..1944969,1945071..1945155,1945696..1945763, 1945879..1945929,1946005..1946078,1946578..1946636, 1946723..1946799,1946901..1947014) /locus_tag="TCM_012279" /note="paralog of Thecc1EG024176t2" /codon_start=1 /product="Peptidyl-tRNA hydrolase family protein" /protein_id="EOY20964.1" /db_xref="Phytozome:GSVIVT01008257001" /db_xref="TAIR:AT1G18440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GW64" /translation="MKLSSSISSIRFPNFNSPFVKSYPSSFFPSFKFSTTSKRTMTQF PNFSIKNTNSSPANTADSQVAPPKPKPTPPPPRPWLIVGLGNPGKKYNGTRHNVGFEM VDAIAEAEGIPINTVNFKALFGKGFIGNVPVMLAKPQTFMNSSGESVGAIVSYYKIPL KQVLVIFDDLDLPFAKLRLLPKGGHGGHNGMRSIIDHFKGSRDFPRLRIGIGRPPGRM DAVNFVLRPFNKQEREELGFTFQHGIEAVRILSLEGFDKSATYVNSAKAMEQLG" mobile_element 1948215..1948674 /note="source:CACAO_Mariner_E220_scaffold_9 14746 15244" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 1948602..1948685 /note="source:scaffold_7_CACTA_0779 12611 12694" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1950367..1950536 /note="source:scaffold_4_CACTA_0483 981 1151" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1950515..1950697) /note="source:scaffold_4_CACTA_0483 1004 1189" /mobile_element_type="transposon:TIR/CACTA" gene complement(1951302..1952682) /locus_tag="TCM_012280" /note="dbxref CacaoGD:Thecc1EG012280" mRNA complement(1951302..1952682) /locus_tag="TCM_012280" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.51 coverage" CDS complement(1952212..1952634) /locus_tag="TCM_012280" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20965.1" /translation="MFYGSSTLQNACMCDTWMTKLLTVISIYVTGAGSQARFACSLNF REAGCWVGLAWFGLIFAFYGCVLCFSLLMASEVHACVRGVVKKKGNRLHWSVGPAMKV DWSSSQTGSLGFKCDVCTMEVPPPGPVGVVRWMWGPVP" gene complement(1952769..1954829) /locus_tag="TCM_012281" /note="dbxref CacaoGD:Thecc1EG012281" mRNA complement(1952769..1954829) /locus_tag="TCM_012281" /product="Eukaryotic aspartyl protease family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s02540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011849t1" /inference="similar to AA sequence:frave:gene26231" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc950t2" CDS complement(1952895..1954370) /locus_tag="TCM_012281" /note="dbxref frave:gene26231; paralog of Thecc1EG011849t1" /codon_start=1 /product="Eukaryotic aspartyl protease family protein" /protein_id="EOY20966.1" /db_xref="TAIR:AT3G18490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LS40" /translation="MASSSKFPVSFLFFFSLSFLFTSTLSRHSPQATTTLDVSSSLEQ AQHILSFDPQSLTSFVQAQSAAPFFNSSSSSVFSIPLHSRGSLRKTHHTDYKSLVLSR LDRDSSRVDSLTTKLQLALNGVKKSELRPLPTEIRPEALSTPVISGTSQGSGEYFSRI GVGNPSKQFYMVLDTGSDITWIQCEPCSDCYQQSDPIFNPSGSSTYSPVSCGSRQCSS LEVSACRSGKCLYQVSYGDGSYTVGEFVTETVSFGNSGNINGVALGCGHDNEGLFVGA AGLLGLGGGPLSLTSQIKATSFSYCLVNRDSASSSTLDFNSGLTSDSVTAPLLRNQKI DTFYYVGLTGFSVGGQPVQLPTGLFDMDASGKGGVIVDCGTAVTRLQTQAYNALRDAF VKLTHDLPTASGVALFDTCYDLSSRTSVRVPTVAFHFGGQSLDLPAKNYLIPVDSSGV FCFAFAPTSSSLSIIGNVQQQGTRVSFDLANNKVGFSPRKC" mobile_element complement(1954742..1954925) /note="source:CACAO_PIF_E119_scaffold_3 4432 4617" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(1956704..1968912) /locus_tag="TCM_012282" /note="dbxref CacaoGD:Thecc1EG012282" mRNA complement(join(1956704..1957220,1957307..1957399, 1957621..1957700,1958370..1958471,1958557..1958700, 1958824..1958931,1959712..1959792,1960052..1960171, 1960415..1960543,1961521..1961613,1962258..1962423, 1963376..1963431,1963895..1963989,1964147..1964256, 1964470..1964558,1965664..1965813,1966644..1966822, 1967311..1967421,1968318..1968912)) /locus_tag="TCM_012282" /product="CCAAT-displacement protein alternatively spliced product isoform 1" /inference="alignment:exonerate- protein:2:ricco:30174.m008707" /inference="similar to AA sequence:ricco:30174.m008707" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03085t00001" mRNA complement(join(1956792..1957220,1957307..1957399, 1957621..1957700,1958370..1958471,1958557..1958700, 1958824..1958931,1959712..1959792,1960052..1960171, 1960415..1960543,1961521..1961613,1962258..1962423, 1963376..1963431,1963895..1963989,1964147..1964256, 1964470..1964558,1965664..1965813,1966644..1966822, 1967311..1967421,1968318..1968633)) /locus_tag="TCM_012282" /product="CCAAT-displacement protein alternatively spliced product isoform 1" /inference="alignment:exonerate- protein:2:ricco:30174.m008707" /inference="similar to AA sequence:ricco:30174.m008707" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1390t8; alternateUTRof:Thecc1EG012282t1; inference alignment:Newbler:10:TSA:cgbaL_g03085t00001" CDS complement(join(1957160..1957220,1957307..1957399, 1957621..1957700,1958370..1958471,1958557..1958700, 1958824..1958931,1959712..1959792,1960052..1960171, 1960415..1960543,1961521..1961613,1962258..1962423, 1963376..1963431,1963895..1963989,1964147..1964256, 1964470..1964558,1965664..1965813,1966644..1966822, 1967311..1967421,1968318..1968402)) /locus_tag="TCM_012282" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30174.m008707" /codon_start=1 /product="CCAAT-displacement protein alternatively spliced product isoform 1" /protein_id="EOY20967.1" /db_xref="TAIR:AT3G18480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2R2" /translation="MDAPQSGSDRDKSNPSSSPVSVVSNFWKEFYLEKEKSVLDEQGL RIAENQENSQKNRRKLAESTRDFKKASAEEKLSLFNSLLKGYQEEVDNLTKRAKFGEN AFLNIYQKLYEAPDPYPALASIAEQDLKISELESENRKMKVELEEFRTEAMHLKNQQA TIRRLEERTRQLEQQMEEKVKEIVEIKQRSLAEENQKTLEVLKDREQSLQDQLRQAKE SVSNMQKLHELAQSQLFELRAQSEEDRAAKQSEVNLLMDEVERAQTRLFSLEREKGVL RSQLQSVHEESENKRSNNVDSNTILENSLSAKEKIISELNMELHNIETTLSNEREEHV NEIKKLNSLLNEKEVALEEMKKELQVRPTTKLVDDLHKKVKILQAVGYNSIEAEDWEA ATSGEEMSKMESLLLDKNRKMEHELTQLKIKLSEKTSLLETAEGKIVELTEKVNEQQK LIQKLEDDILKGYSSKERKGTLFDDWDLSESGVNELSENTDQKHISSDQDQSSMLKVI CNQRDRFRARLRETEEEIRQLKEKIGELTAELEKTKADNVKLYGKIRYVQDYNQEKVI SRGSKKYAEDLESGFTSDVESKYKKIYEDDINPFAAFSKKERDQRYKELGFRDRITLS SGRFLLGNKYARTFAFFYTIGLHILVFTCLYRMSALSYLSNGPEEALVGEKNVNLPRG F" CDS complement(join(1957160..1957220,1957307..1957399, 1957621..1957700,1958370..1958471,1958557..1958700, 1958824..1958931,1959712..1959792,1960052..1960171, 1960415..1960543,1961521..1961613,1962258..1962423, 1963376..1963431,1963895..1963989,1964147..1964256, 1964470..1964558,1965664..1965813,1966644..1966822, 1967311..1967421,1968318..1968402)) /locus_tag="TCM_012282" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30174.m008707" /codon_start=1 /product="CCAAT-displacement protein alternatively spliced product isoform 1" /protein_id="EOY20968.1" /db_xref="TAIR:AT3G18480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2R2" /translation="MDAPQSGSDRDKSNPSSSPVSVVSNFWKEFYLEKEKSVLDEQGL RIAENQENSQKNRRKLAESTRDFKKASAEEKLSLFNSLLKGYQEEVDNLTKRAKFGEN AFLNIYQKLYEAPDPYPALASIAEQDLKISELESENRKMKVELEEFRTEAMHLKNQQA TIRRLEERTRQLEQQMEEKVKEIVEIKQRSLAEENQKTLEVLKDREQSLQDQLRQAKE SVSNMQKLHELAQSQLFELRAQSEEDRAAKQSEVNLLMDEVERAQTRLFSLEREKGVL RSQLQSVHEESENKRSNNVDSNTILENSLSAKEKIISELNMELHNIETTLSNEREEHV NEIKKLNSLLNEKEVALEEMKKELQVRPTTKLVDDLHKKVKILQAVGYNSIEAEDWEA ATSGEEMSKMESLLLDKNRKMEHELTQLKIKLSEKTSLLETAEGKIVELTEKVNEQQK LIQKLEDDILKGYSSKERKGTLFDDWDLSESGVNELSENTDQKHISSDQDQSSMLKVI CNQRDRFRARLRETEEEIRQLKEKIGELTAELEKTKADNVKLYGKIRYVQDYNQEKVI SRGSKKYAEDLESGFTSDVESKYKKIYEDDINPFAAFSKKERDQRYKELGFRDRITLS SGRFLLGNKYARTFAFFYTIGLHILVFTCLYRMSALSYLSNGPEEALVGEKNVNLPRG F" mRNA complement(join(1957616..1958471,1958557..1958700, 1958824..1958931,1959712..1959792,1960052..1960171, 1960415..1960543,1961521..1961613,1962258..1962423, 1963376..1963431,1963895..1963989,1964147..1964256, 1964470..1964558,1965664..1965813,1966644..1966822, 1967311..1967421,1968318..1968526)) /locus_tag="TCM_012282" /product="CCAAT-displacement protein alternatively spliced product isoform 3" /inference="alignment:exonerate- protein:2:ricco:30174.m008707" /inference="similar to AA sequence:ricco:30174.m008707" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1313t7; inference alignment:Newbler:10:TSA:cgbaL_g03085t00001" CDS complement(join(1958343..1958471,1958557..1958700, 1958824..1958931,1959712..1959792,1960052..1960171, 1960415..1960543,1961521..1961613,1962258..1962423, 1963376..1963431,1963895..1963989,1964147..1964256, 1964470..1964558,1965664..1965813,1966644..1966822, 1967311..1967421,1968318..1968402)) /locus_tag="TCM_012282" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30174.m008707" /codon_start=1 /product="CCAAT-displacement protein alternatively spliced product isoform 3" /protein_id="EOY20969.1" /db_xref="TAIR:AT3G18480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2R2" /translation="MDAPQSGSDRDKSNPSSSPVSVVSNFWKEFYLEKEKSVLDEQGL RIAENQENSQKNRRKLAESTRDFKKASAEEKLSLFNSLLKGYQEEVDNLTKRAKFGEN AFLNIYQKLYEAPDPYPALASIAEQDLKISELESENRKMKVELEEFRTEAMHLKNQQA TIRRLEERTRQLEQQMEEKVKEIVEIKQRSLAEENQKTLEVLKDREQSLQDQLRQAKE SVSNMQKLHELAQSQLFELRAQSEEDRAAKQSEVNLLMDEVERAQTRLFSLEREKGVL RSQLQSVHEESENKRSNNVDSNTILENSLSAKEKIISELNMELHNIETTLSNEREEHV NEIKKLNSLLNEKEVALEEMKKELQVRPTTKLVDDLHKKVKILQAVGYNSIEAEDWEA ATSGEEMSKMESLLLDKNRKMEHELTQLKIKLSEKTSLLETAEGKIVELTEKVNEQQK LIQKLEDDILKGYSSKERKGTLFDDWDLSESGVNELSENTDQKHISSDQDQSSMLKVI CNQRDRFRARLRETEEEIRQLKEKIGELTAELEKTKADNVKLYGKIRYVQDYNQEKVI SRGSKKYAEDLESGFTSDVESKYKKIYEDDINPFAAFSKKVGEHVLLS" mRNA complement(join(<1959166..1959211,1959712..1959792, 1960052..1960171,1960415..1960543,1961521..1961613, 1962258..1962423,1963376..1963431,1963895..1963989, 1964147..1964256,1964470..1964558,1965664..1965813, 1966644..1966822,1967311..1967421,1968318..1968633)) /locus_tag="TCM_012282" /product="CCAAT-displacement protein alternatively spliced product isoform 4" /inference="alignment:exonerate- protein:2:ricco:30174.m008707" /inference="similar to AA sequence:ricco:30174.m008707" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1390t3; inference alignment:Newbler:10:TSA:cgbaL_g03085t00001" CDS complement(join(<1959167..1959211,1959712..1959792, 1960052..1960171,1960415..1960543,1961521..1961613, 1962258..1962423,1963376..1963431,1963895..1963989, 1964147..1964256,1964470..1964558,1965664..1965813, 1966644..1966822,1967311..1967421,1968318..1968402)) /locus_tag="TCM_012282" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30174.m008707" /codon_start=1 /product="CCAAT-displacement protein alternatively spliced product isoform 4" /protein_id="EOY20970.1" /db_xref="TAIR:AT3G18480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2R2" /translation="MDAPQSGSDRDKSNPSSSPVSVVSNFWKEFYLEKEKSVLDEQGL RIAENQENSQKNRRKLAESTRDFKKASAEEKLSLFNSLLKGYQEEVDNLTKRAKFGEN AFLNIYQKLYEAPDPYPALASIAEQDLKISELESENRKMKVELEEFRTEAMHLKNQQA TIRRLEERTRQLEQQMEEKVKEIVEIKQRSLAEENQKTLEVLKDREQSLQDQLRQAKE SVSNMQKLHELAQSQLFELRAQSEEDRAAKQSEVNLLMDEVERAQTRLFSLEREKGVL RSQLQSVHEESENKRSNNVDSNTILENSLSAKEKIISELNMELHNIETTLSNEREEHV NEIKKLNSLLNEKEVALEEMKKELQVRPTTKLVDDLHKKVKILQAVGYNSIEAEDWEA ATSGEEMSKMESLLLDKNRKMEHELTQLKIKLSEKTSLLETAEGKIVELTEKVNEQQK LIQKLEDDILKGYSSKERKGTLFDDWDLSESGVNELSEVGKEFIVLFVLSIHC" mobile_element 1959526..1959587 /note="source:CACAO_M_E86184_F12_scaffold_13 3048 3112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1971126..1971497) /note="source:CACAO_M_E49205_F4_scaffold_6 4020 4379" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1972094..1972379) /note="source:CACAO_M_E49205_F4_scaffold_6 8869 9333" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1972380..1973241 /note="source:INTACT59_F126_scaffold_9-int 16054 16912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1973242..1977359) /note="source:CACAO_M_E49205_F4_scaffold_6 2148 8868" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1975875..1982061 /note="source:INTACT19_F111_scaffold_6-int 4816 14378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1983095..1983455) /note="source:INTACT257_F186_scaffold_6-int 17474 17834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1989812..1990204 /note="source:CACAO_Mutator_E1376_scaffold_6 1471 1863" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1990200..1991839 /note="source:CACAO_Mutator_E1376_scaffold_6 2023 3641" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1991825..1994479 /note="source:CACAO_Mutator_E1376_scaffold_6 6639 9321" /mobile_element_type="transposon:TIR/Mutator" gene complement(1996105..1997415) /locus_tag="TCM_012285" /note="dbxref CacaoGD:Thecc1EG012285" mRNA complement(join(1996105..1996296,1996386..1996595, 1996902..1996973,1997097..1997415)) /locus_tag="TCM_012285" /product="PLAC8 family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400037725" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007048t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400037725" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1047t2" CDS complement(join(1996217..1996296,1996386..1996595, 1996902..1996973,1997097..1997277)) /locus_tag="TCM_012285" /note="paralog of Thecc1EG007048t1" /codon_start=1 /product="PLAC8 family protein, putative" /protein_id="EOY20971.1" /db_xref="Phytozome:PGSC0003DMP400037725" /db_xref="TAIR:AT1G49030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T4S5" /translation="MCPNNSGNSRSTPSKAPPAAAELPPYPPQPIPNFAPTAPVVSKP SDWSTGLCSCCEDISSCITTCCCPCITFGQNAEIIDRGTTSCVGAGLVYYLLAHACCS CLYTCTYRKKLRSLFGLKEEPCADFFVHCCCHFCAICQEYRELQSQGFDPSVGWLANV DRWNRGGAMAPPTFATGMAR" gene complement(1998497..2000501) /locus_tag="TCM_012286" /note="dbxref CacaoGD:Thecc1EG012286" mRNA complement(join(1998497..1999622,2000020..2000501)) /locus_tag="TCM_012286" /product="Uncharacterized protein" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage" CDS complement(join(1999051..1999622,2000020..2000113)) /locus_tag="TCM_012286" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20972.1" /translation="MIIKKKRIITIKTHKLATATATRRSVTSCCLCQRKILKRINRKV VAEVKRVTLQLPAAMAPHIQELAVAVFHKQLAVLVAVMMVGFHMGLVVAVMVGEMNGN ELVVVVRNMLQPVVVMAVVESTPQMGVEVEVVLYMAEVKAVVENGLEEVVVAAISMDK FVVEVNVAAVVVALNNGMVVGSYSSNELAVVEVVSLVAEEVGTSRNMKVLALVKAVGV TDK" mobile_element 2000706..2001759 /note="source:CACAO_on_S_E46_scaffold_2 380 1432" /mobile_element_type="transposon:TIR/Mutator" gene complement(2004829..2005771) /locus_tag="TCM_012288" /note="dbxref CacaoGD:Thecc1EG012288" mRNA complement(2004829..2005771) /locus_tag="TCM_012288" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.71 coverage" CDS complement(2005247..2005651) /locus_tag="TCM_012288" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20973.1" /translation="MLYSTLNLISQASSSHLFVFCFFNLIVVVILMGPKNHSNSDQGC ESHLAPPANDEQDVQGLPLLDSSEQDMNANPGVLCASETVTEETKLESEDDHGDNNDE LTKRIEEFIAKVKRDQMAEMLIDIDSLAQRHN" mobile_element complement(2009659..2012624) /note="source:CACAO_M_E69760_F9_scaffold_9 6702 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2015906..2016690 /locus_tag="TCM_012289" /note="dbxref CacaoGD:Thecc1EG012289" mRNA 2015906..2016690 /locus_tag="TCM_012289" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012291t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 2016188..2016670 /locus_tag="TCM_012289" /note="paralog of Thecc1EG012291t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20974.1" /translation="MGNPDADRSAYESQQIQTEYELQPQEYEPNQEAAPIPDQYLAAT YQNNQQGQQYQAQQMGTVGNNPQTQEHQFQPQQQPPPAHQQPMQYPPPQQPAPAQQRP TQYPPQQQPTQYPPPQPNQAYPPPQPAQYPPQNLQNNPMYQNRPNPNQPAAYPPQPVQ " gene 2017346..2018155 /locus_tag="TCM_012290" /note="dbxref CacaoGD:Thecc1EG012290" mRNA 2017346..2018155 /locus_tag="TCM_012290" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012291t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.30 coverage" mobile_element complement(2017773..2017824) /note="source:CACAO_M_E49559_F88_scaffold_7 7676 7731" /mobile_element_type="retrotransposon:LTR/Copia" CDS 2017785..2018030 /locus_tag="TCM_012290" /note="paralog of Thecc1EG012291t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20975.1" /translation="MYIYIYIYIYIYSVLKRERNLIFMHGVGTACGASGLLYGAIAFL IGMPCLLSCTHRTKLRNKLGLPEAPGPDWVTHFLCEW" mobile_element 2018660..2018807 /note="source:CACAO_M_S_E17777_F2_scaffold_3 2898 3043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2019204..2020279 /note="source:CACAO_M_E3463_F86_scaffold_1 1 1077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2020380..2022224) /note="source:CACAO_M_E58905_F86_scaffold_9 1 1840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2024882..2026474) /note="source:CACAO_M_E44258_F10_scaffold_5 1452 3031" /mobile_element_type="retrotransposon:LTR/Copia" gene 2027296..2029620 /locus_tag="TCM_012291" /note="dbxref CacaoGD:Thecc1EG012291" mRNA join(2027296..2028089,2028668..2028739,2029017..2029229, 2029335..2029620) /locus_tag="TCM_012291" /product="PLAC8 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012293t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008259001" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1057t1" CDS join(2027351..2028089,2028668..2028739,2029017..2029229, 2029335..2029420) /locus_tag="TCM_012291" /note="paralog of Thecc1EG012293t1" /codon_start=1 /product="PLAC8 family protein" /protein_id="EOY20976.1" /db_xref="Phytozome:GSVIVT01008259001" /db_xref="TAIR:AT1G49030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TT47" /translation="MGNPDADHSAYESQQIQTEYELQPQEYEPNQEAAPIPDQYLAAT YQNNQQGQQYQAQQMGTVGNDPQTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNPMYQNRPNPNQPAAYPPQPVQ YPPKSQPTNQMYSNVSPAVMQPQTVYAPNASPQAFPQPAYLPQQGTGMPLASPHKPGG QPAAVAGIPVAGDGWRSGLFDFMDDPMNALVTAFFPCLTFGQIAEIVDDGHTTCGTSG LLYGAIAFLIGMPCLLSCTYRTKLRNKFGLPEAPGPDWVTHFLCEWCALCQEYRELQH RGWDPSIGWQGNLARNQNMQPAPAMMAPMNQRMMA" gene 2030236..2043367 /locus_tag="TCM_012292" /note="dbxref CacaoGD:Thecc1EG012292" mRNA join(2030236..2030457,2031545..2031941,2032158..2032223, 2032318..2032389,2032538..2032750,2035698..2035801, 2038436..2038732,2038897..2038977,2043105..2043367) /locus_tag="TCM_012292" /product="PLAC8 family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g01990.1.2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400009910" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" mobile_element complement(2031357..2031413) /note="source:CACAO_M_E42514_F40_scaffold_5 118 174" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(2031572..2031941,2032158..2032223,2032318..2032389, 2032538..2032750,2035698..2035801,2038436..2038732, 2038897..2038950) /locus_tag="TCM_012292" /codon_start=1 /product="PLAC8 family protein" /protein_id="EOY20977.1" /db_xref="Phytozome:PGSC0003DMP400009910" /db_xref="TAIR:AT1G49030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TT47" /translation="MGQIKTGPSVSEPHHQVQAEPEPQCHAIASLHEPTQNQASATIY QTQQSTRANETLPQQQLQQQHYQPQPNQRTYGVVQPAAPPMPAQFSPQTAQNTGPNEH PLEYPPLSRQQTIPIQPNQDVGFPVPVDGWKTGLFDCMDDPMNALITVCFPCVTFGQV AEIVDEGHTSCGTSGLLYGLIAFFIGVPCILSCAYRTKLRNKLGLVESPAPDWVTHCF CDWCALCQEYRELQQRGWDPSIACCSGRIMWISLLEGHRIRIYICTSVGEARRVSLEL ETPSCNVENKNEDSKLGTDQRVLYIEEKYSSVIKVEPPNLEPTTPCNPHHKVIKINFS PSSGIRYAQKHIQIEDKPPRLESDIHPEDVTIMKKTSNKRDKEEFEEGLRNRAVPKG" mobile_element complement(2033255..2033902) /note="source:CACAO_M_E50311_F328_scaffold_7 5811 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2034212..2036833) /note="source:CACAO_M_E50311_F328_scaffold_7 3291 5822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2039837..2041366) /note="source:CACAO_M_E59701_F121_scaffold_9 228 1810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2041367..2044665 /note="source:CACAO_M_E12149_F82_scaffold_3 1 3299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2044668..2044895 /note="source:CACAO_M_E12845_F210_scaffold_3 1593 1820" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2051469..2053297 /locus_tag="TCM_012293" /note="dbxref CacaoGD:Thecc1EG012293" mRNA join(2051469..2051788,2052373..2052444,2052720..2052932, 2053038..2053297) /locus_tag="TCM_012293" /product="PLAC8 family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008259001.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012291t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008259001" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1069t1" CDS join(2051470..2051788,2052373..2052444,2052720..2052932, 2053038..2053123) /locus_tag="TCM_012293" /note="paralog of Thecc1EG012291t1" /codon_start=1 /product="PLAC8 family protein" /protein_id="EOY20978.1" /db_xref="Phytozome:GSVIVT01008259001" /db_xref="TAIR:AT1G49030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TT47" /translation="MYQNRPNPNQPAAYPPQPVQYPLKSQPTNQMYSNVSPGVMQPQT VYAPNASPQAFPQPAYLPQQGTGMPLASPHKPGGQPAAVAGIPVAGDGWRSGLFDFMD DPMNALVTAFFPCLTFGQIAEIVDDGHTTCGTSGLLYGAIAFLIGMPCLLSCTYRTKL RNKFGLPEAPGPDWVTHFLCEWCALCQEYRELQHRGWDPSIGWQGNLARNQNMQPAPV MMAPMNQRMMA" gene complement(2055368..2064281) /locus_tag="TCM_012294" /note="dbxref CacaoGD:Thecc1EG012294" mRNA complement(join(2055368..2055937,2060105..2060478, 2060659..2061036,2061136..2061689,2064243..2064281)) /locus_tag="TCM_012294" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040299t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS complement(join(2055577..2055937,2060105..2060478, 2060659..2061036,2061136..2061327)) /locus_tag="TCM_012294" /note="paralog of Thecc1EG040299t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20979.1" /translation="MASSSFNAIAPPIFTRENYVIWPVKMKAYLRVFDLWEMVEVGGD PLMMRHANPTIAQLKQHSEEDRLKDEFHGSERTRQMQALNLHREFEILRMKEDKTIKE YSDKIMKLVNQLRLLGEDLSEKRIVNKVLVSLSEKFEAKISSLEDSKDLSQLTVTELV NALQAQEQRCSNRNGGQVEGALMVRSRGKAMGHVEKFCKAKANNNEEKVAVVEEKEDC DEALFIIKITEKHIRNDVWLIDSGCSNHITSDKEIFIMLDSSFRSRAEIGNGDFIQIV RKGTVGVQTTSGIKTISNVLYSTEVSQNLLSVGQLLDDNDYWRVKWVLHHDPMVCFQS WVELSKSVSNDKVMRTAFYTISWSIWLARNEVIFKGKEWSRANVFDLIKMRLVWWVKA KWSKLSPSTLDIMRFPNEGVQPMKTKKNQSKDLWTEPPPGCL" gene complement(2056938..2058791) /locus_tag="TCM_012295" /note="dbxref CacaoGD:Thecc1EG012295" mRNA complement(join(2056938..2057303,2057535..2058791)) /locus_tag="TCM_012295" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="alignment:exonerate- protein:2:frave:gene07734.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040529t1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1072t1" CDS complement(join(2057023..2057303,2057535..2058210)) /locus_tag="TCM_012295" /note="paralog of Thecc1EG040529t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY20980.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C788" /translation="MLTKAMEEEITTLEQNNTWELVPKPRNVEPVSCKWVYKIKRRTD GSIERYEAQLVARGFTQQHGLDYDETFSLVAKLTTIQVLLALAANKDWNLWQMDVKNA FLHGELDREIYKIQPMTFQNPGHPEYVCKLRKALHGLKHAPRAWYGKIAEFLTQNGYL VTLVVSSLFVKVNGGRLAIVLVYVDDLIKTGDSEEEILQIKKNLSVHFQMKELGQLKQ FLGLEVDLGVMSQYMQNPKKPHMEAVRRMLRYVKGKIDYGILYKKDKECKLVGYCDAD YTGDYDTRRSTTGYVFKLGSGVISWCSKRQPTVSLSTTEAEY" mobile_element complement(2057027..2057082) /note="source:CACAO_Mutator_E206_scaffold_1 2428 2483" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2059767..2061790) /note="source:scaffold_5_CACTA_0612 14318 16339" /mobile_element_type="transposon:TIR/CACTA" gene 2064336..2067666 /locus_tag="TCM_012297" /note="dbxref CacaoGD:Thecc1EG012297" mRNA join(2064336..2064716,2065087..2065768,2065863..2065934, 2066083..2066295,2067326..2067666) /locus_tag="TCM_012297" /product="PLAC8 family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031066001" /inference="similar to AA sequence:Phytozome:GSVIVT01008259001" /note="quality class is medium, express is medium, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2734t1" CDS join(2064630..2064716,2065087..2065768,2065863..2065934, 2066083..2066295,2067326..2067417) /locus_tag="TCM_012297" /codon_start=1 /product="PLAC8 family protein" /protein_id="EOY20981.1" /db_xref="Phytozome:GSVIVT01008259001" /db_xref="TAIR:AT1G49030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TT47" /translation="MLSLTPGIHSSLQKLILLPFPTRNLILSLRKKNCDELTMGQIKA GPSVSEPHHQVQAEPEPQCPAITLLHEPTQNQASATIYQTQQSTRVNQALPQQQLQQQ RYQSQPNQQVYGVVQPTAPPVPAQFPPQTAQNTGPNQHPVEYPPLSPQQTIPIQPNQD VGVIYQQQQGVPQAIYQQPPPSYPQNYIAPPFAASSYVSHAQIFHDVTYQVPPQYVVM PPYIHGTVSQIDAASSGFPLPVKVWNTGLFDCMDDPMNALITVCFPCLTFGRVAEIVD EGHTSCGTSGLLYGLIAFFIGVPCILSCAYRTKLRNKLGLVESPAPDWVTHCFCDWCA LCQEYRELQQRGWDPSIGWHGNLAKRQSIQQQQHLAMMPPINQTMFA" gene 2068096..2073771 /locus_tag="TCM_012298" /note="dbxref CacaoGD:Thecc1EG012298" mRNA join(2068096..2068663,2068827..2068889,2069034..2069120, 2070507..2070569,2070680..2070766,2072103..2072165, 2072293..2072367,2072438..2072493,2072725..2073771) /locus_tag="TCM_012298" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2153t1" CDS join(2068154..2068663,2068827..2068889,2069034..2069120, 2070507..2070569,2070680..2070766,2072103..2072165, 2072293..2072367,2072438..2072493,2072725..2072779) /locus_tag="TCM_012298" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20982.1" /translation="MMNNPGLSNNIDAADAEIEVANILLELSKVWVEPVVIRWRFRPR RSALKESPSLSHQSIPPPKAHYIVSSRLETPSCNGETKNEDLKLDTDQHVPYIEEKYS SENKVEPPDLEPTTPCNPQHKVVKIKFNPSSEIRYAQKHIQIEDKPPRLEADIHPEDV TIMKKTSNKRDKEEFEEGLSSRAVPKGCLVPGSGNIKAEPTTLPKAYNSFIPHAKPAK RKDKEEFEEGLSNLAVPKGHLVRGSGNIKAVPTTVPEANNSFMPHTKPAKRKQKEEME NEVAFWEQHKRQLLESIEKVKDCLEKRKALNLRLKALKLQCFSLCLLSFLLVKAKPDS SERWLEGDDFERIFRTDS" gene complement(2073773..2107691) /locus_tag="TCM_012299" /note="dbxref CacaoGD:Thecc1EG012299" mRNA complement(join(2073773..2074527,2075121..2075329, 2075538..2075579,2075731..2075891,2075999..2076070, 2076168..2076349,2077495..2077618,2077750..2077814, 2078661..2078851,2078946..2079207,2081588..2081671, 2081775..2081832,2083081..2083128,2083389..2083546, 2083851..2083901,2083980..2084053,2084168..2084243, 2084848..2084892,2084992..2085022,2085105..2085234, 2085355..2085550,2086557..2086640,2086734..2086788, 2088118..2088338,2089679..2089792,2090002..2090065, 2090799..2090899,2091182..2091323,2092752..2092953, 2094701..2094794,2094885..2095529,2107434..2107691)) /locus_tag="TCM_012299" /product="Stomatal cytokinesis defective / SCD1 protein (SCD1) isoform 1" /inference="alignment:exonerate- protein:2:ricco:30174.m008710" /inference="similar to AA sequence:ricco:30174.m008710" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1194t5" mRNA complement(join(2074142..2074527,2075121..2075329, 2075538..2075579,2075728..2075892,2075999..2076070, 2076168..2076349,2077495..2077618,2077750..2077814, 2078661..2078851,2078946..2079207,2081588..2081671, 2081775..2081832,2083081..2083128,2083389..2083546, 2083851..2083901,2083980..2084053,2084168..2084243, 2084848..2084892,2084992..2085022,2085105..2085234, 2085355..2085550,2086557..2086640,2086734..2086788, 2088118..2088338,2089679..2089792,2090002..2090065, 2090799..2090899,2091182..2091323,2092752..2092953, 2094701..2094794,2094885..2095374)) /locus_tag="TCM_012299" /product="Stomatal cytokinesis defective / SCD1 protein (SCD1) isoform 2" /inference="alignment:exonerate- protein:2:ricco:30174.m008710" /inference="similar to AA sequence:ricco:30174.m008710" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1194t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1194t5; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc394t14" CDS complement(join(2074432..2074527,2075121..2075329, 2075538..2075579,2075731..2075891,2075999..2076070, 2076168..2076349,2077495..2077618,2077750..2077814, 2078661..2078851,2078946..2079207,2081588..2081671, 2081775..2081832,2083081..2083128,2083389..2083546, 2083851..2083901,2083980..2084053,2084168..2084243, 2084848..2084892,2084992..2085022,2085105..2085234, 2085355..2085550,2086557..2086640,2086734..2086788, 2088118..2088338,2089679..2089792,2090002..2090065, 2090799..2090899,2091182..2091323,2092752..2092953, 2094701..2094794,2094885..2095058)) /locus_tag="TCM_012299" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30174.m008710" /codon_start=1 /product="Stomatal cytokinesis defective / SCD1 protein (SCD1) isoform 1" /protein_id="EOY20983.1" /db_xref="TAIR:AT1G49040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXA7" /translation="MARIFEYFVVCGLGPEIRTLDGTKGYHGTEYMYLPSLLDQYPPP NHSLYPPPPPQLPTCVLPAGVEFYSSGFDSNDPSTYPRSYPIVLTEGDGSKIYVSCIA FRDPVSEDIAEAYRIPTNSFADKCICLVSRSPCFRVLRDALEELFALCFSPIGSSKPL WDIIAYMVSKVPLPTPGKDRVLFAIDSCLLSVEAPPKDGLPHADISFQPLVQCLDVDN LIKFFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDA PTPYMMGLHSGVDTSNLVMDGVVVVDLEFNQITTTEEIPPIPDPELSLLRGEILKLLY PNVVGIDQMKADLCGSSDQNFKISNKPWGEDHDLQLRFIFLKFFASILGGYRNFIENN ATQAFNTQAFLKKRSRSTNQPPEPMIAQFLDSHGFLDYLERGIGSDENNNNLLDKLQD AIGRGQNPLLIISSTMVEPEIITISDPDVGVSGSGAKYSYDRFPSTVRTEEEEEKRKQ ILAAANGAFEYSGRQTPSSPSVSSLERAAERERMVLDIKVKLQGLWLRLLKLGATEDP LSSFEYGTILALIESDAEGIGGSGFVECIREHINSGWHGQLTEEQFIAVKELLKTAIS RATSRNDVSTIRDALEVSAEMYKKDANNVPDYVQRHLISLSIWEELRFWEGYFDYLME QSSNKSANYATMVTAQLIVLALHMAGLGLADNDGWYMIETIAERYNIGYKLLIKLRGL LSHIQQLRINYWGISSVKSQSLLPPGLSSPRPKDAADENQQPAEASGVGRSWVQSMFS RDTASRANSFSRVRKSTSDGGPSENGNPSKQDLSAAGQKKMQTNVRILRGHTGAVTAL HCVTRREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRTTLKGHTRTIRAISS DRGKVVSGSDDQSVIVWDKQTSQLLEELKGHDAQVSCVQMLSGERVLTSAHDGTVKMW DVRTDTCVATVGRCSSAVLCMEYDDSTGILAAAGRDAVANIWDIRAGRQMHKLLGHTK WIRSIRMDGDTMVTGSDDWTARVWSVSRGTCDAVLACHAGPLLCVEYSASDKGIITGS ADGLLRFWENEEGGIKCVKNVTIHSAAILSINAGDHWLGIGAADNSMSLFHRPQERLG SFSNTGSKMSGWQLYRTPQKTSAVVRCVASDLERKRICSGGRNGILRLWEATINI" CDS complement(join(2075883..2075892,2075999..2076070, 2076168..2076349,2077495..2077618,2077750..2077814, 2078661..2078851,2078946..2079207,2081588..2081671, 2081775..2081832,2083081..2083128,2083389..2083546, 2083851..2083901,2083980..2084053,2084168..2084243, 2084848..2084892,2084992..2085022,2085105..2085234, 2085355..2085550,2086557..2086640,2086734..2086788, 2088118..2088338,2089679..2089792,2090002..2090065, 2090799..2090899,2091182..2091323,2092752..2092953, 2094701..2094794,2094885..2095058)) /locus_tag="TCM_012299" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30174.m008710" /codon_start=1 /product="Stomatal cytokinesis defective / SCD1 protein (SCD1) isoform 2" /protein_id="EOY20984.1" /db_xref="TAIR:AT1G49040.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXA7" /translation="MARIFEYFVVCGLGPEIRTLDGTKGYHGTEYMYLPSLLDQYPPP NHSLYPPPPPQLPTCVLPAGVEFYSSGFDSNDPSTYPRSYPIVLTEGDGSKIYVSCIA FRDPVSEDIAEAYRIPTNSFADKCICLVSRSPCFRVLRDALEELFALCFSPIGSSKPL WDIIAYMVSKVPLPTPGKDRVLFAIDSCLLSVEAPPKDGLPHADISFQPLVQCLDVDN LIKFFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDA PTPYMMGLHSGVDTSNLVMDGVVVVDLEFNQITTTEEIPPIPDPELSLLRGEILKLLY PNVVGIDQMKADLCGSSDQNFKISNKPWGEDHDLQLRFIFLKFFASILGGYRNFIENN ATQAFNTQAFLKKRSRSTNQPPEPMIAQFLDSHGFLDYLERGIGSDENNNNLLDKLQD AIGRGQNPLLIISSTMVEPEIITISDPDVGVSGSGAKYSYDRFPSTVRTEEEEEKRKQ ILAAANGAFEYSGRQTPSSPSVSSLERAAERERMVLDIKVKLQGLWLRLLKLGATEDP LSSFEYGTILALIESDAEGIGGSGFVECIREHINSGWHGQLTEEQFIAVKELLKTAIS RATSRNDVSTIRDALEVSAEMYKKDANNVPDYVQRHLISLSIWEELRFWEGYFDYLME QSSNKSANYATMVTAQLIVLALHMAGLGLADNDGWYMIETIAERYNIGYKLLIKLRGL LSHIQQLRINYWGISSVKSQSLLPPGLSSPRPKDAADENQQPAEASGVGRSWVQSMFS RDTASRANSFSRVRKSTSDGGPSENGNPSKQDLSAAGQKKMQTNVRILRGHTGAVTAL HCVTRREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRTTLKGHTRTIRAISS DRGKVVSGSDDQSVIVWDKQTSQLLEELKGHDAQVSCVQMLSGERVLTSAHDGTVKMW DVRTDTCVATVGRCSSAVLCMEYDDSTGILAAAGRDAVANIWDIRAGRQMHKLLGHTK WIRVN" gene complement(2097053..2102920) /locus_tag="TCM_012300" /note="dbxref CacaoGD:Thecc1EG012300" mRNA complement(join(2097053..2097722,2098235..2098791, 2098877..2099055,2100832..2101026,2101471..2101538, 2102724..2102920)) /locus_tag="TCM_012300" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="similar to AA sequence:frave:gene24361" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(2097608..2097722,2098235..2098791, 2098877..2099055,2100832..2101026,2101471..2101538, 2102724..2102782)) /locus_tag="TCM_012300" /note="dbxref frave:gene24361" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY20985.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BIJ3" /translation="MLSPFTSTKTLLKSPFFAERCIKGENKRLKAKGFEGKELYIPIH TKDEEETEDAIEAKVKETKIAGSNTTLRLVIQTIPKKKEEEEVEEVIDQSWLTNLTLS AINAIDLPSNPKTIGVKWVYKTKLKKNGEVDKYKARLVAKGYKQKYDIDYKEVFAVVS RLDTIRLVFINQPPGYVKSVIEHKLYKLKKTLYGLKQAPRAWNSHIDAYFHKEGFQRY LYEHTLYIKIEDGGKMLMVCVNVDDLIYTGNDSVMIHVFKRNMMIEFDMSNLGLMHYF LGIEVMQSPISIFISQNKYVLEILDRFKMKDYNLVCTQIEYGLKLMKDDGGKKINATF YKQIVGSLMYLTSTRPDIIKDQVADIMTKLLKQDVFVKLQRMLGVFFSKDVVQGKA" mobile_element 2102335..2102423 /note="source:CACAO_M_S_E98191_F4_scaffold_8 1 95" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2102499..2103271 /note="source:CACAO_M_S_E98191_F4_scaffold_8 60 881" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2103205..2103279 /note="source:CACAO_M_S_E1495_F60_scaffold_1 16782 16859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2108036..2108131 /note="source:INTACT59_F126_scaffold_9-int 1 108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2108051..2117106) /note="source:INTACT117_F146_scaffold_2-int 3925 12898" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2117106..2117398 /note="source:CACAO_on_E459_scaffold_2 137 406" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2118603..2125506 /note="source:INTACT1330F_F382_scaffold_8-int 1374 8278" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2120710..2122120 /locus_tag="TCM_012303" /note="dbxref CacaoGD:Thecc1EG012303" mRNA 2120710..2122120 /locus_tag="TCM_012303" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g36230.1.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025984t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc5143t4_G3" CDS 2120975..2121973 /locus_tag="TCM_012303" /note="paralog of Thecc1EG025984t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20986.1" /translation="MSVEVTWRAPWMPHHPVLYKCGNEPWVLLMGPWGAISYAPIMVR RQFGSEQFVPMTHRLNTLEFAYGEPGFLKRIEEIAQAWKKTSRVDQGRYTDEVTTGYQ IWHDQRVKDVVYPKEDALRGPVDPEPRDALLESELARKKSEAENASWKQRYEDLQKEC EKMKREVSEQRKKVRKMEGKYENLNDKFSATTSELQREIQVRENQGNELQTHNDGLRR QVRFQQESIQLLRQEYEELEGVMTTYQQEYERLKQQSTRIQEWGESYRQAYTEKYNQM DYLVWQMREVAYKARSMAWKTDILRSQIFPDGKQEQQLIKYLDKVYSHYNKIGEYF" mobile_element complement(2125607..2125804) /note="source:INTACT60_F127_scaffold_9-int 7563 7760" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2125756..2130434 /locus_tag="TCM_012304" /note="dbxref CacaoGD:Thecc1EG012304" mRNA join(2125756..2126510,2126655..2128324,2129027..2130434) /locus_tag="TCM_012304" /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g36230.1.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007834t1" /inference="similar to AA sequence:Phytozome:Glyma10g18830.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07385t00001_G2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3524t1" mobile_element complement(2125905..2128594) /note="source:INTACT60_F127_scaffold_9-int 4828 7517" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(2126321..2126510,2126655..2128324,2129027..2129740) /locus_tag="TCM_012304" /note="paralog of Thecc1EG007834t1" /codon_start=1 /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H" /protein_id="EOY20987.1" /db_xref="Phytozome:Glyma10g18830.1" /translation="MLEQEEKEILPHQEITEMINLGNGEEKKEVKVGTSLSSDERQKL EELLHEYVDVFAWSYQDMPEVAKYPEWVANIVSVPKKDGKVRMCVDYRDLNRASPKDS FPLPHIDTLVDNTAKHALFSFMDGFSGYNQIKMAPEDMEKTTFVTMWGTFCYKVMPFG LKNAGATYQRAMVALFHDMMHKEIEVYVDDMITKSHTERDHTVNLKKLFERLRKFQLK LNPAKCTFGVTSGKLLGFIVSEKGIEVDQDKIRAIQELPPPKTQKEVRGFLGRLNYIA RFISQLTCKCDPIFKLLRKRDPGEWNEECQIAFDKIKEYLTNPPVLMPPTVGKPLILY LTVNKNSMGCVLGQHDETGKKERAVYYLSKKFMEYESKYSALEKMCCALAWTAQRLRQ YMLYHTTWLVAKLDPIKYIFEKPCLSGRIARWQVLLSEYDIVYVSQKSIKGSAIVDFL ADRANEDYESVSFDFPDEDLMAVLHVEKVGPNELNPWKVYFDGASNALGHGIGAVLIS PNGKYYPATTRLNFNCTNNMAEYEALVMGLQAAIEMKADAIDVYGDSALVICQMKGEW ETRDPKLVPYKKLVTELSKQFKEISFNHLPREENQIADALATLAAMFKIKEAADDVCA KFKIKHHNSTTYRPKMNGAVEAANKNIMKIVEKMTEVYKDWHEKLPFALHAYRTAVRT STGATPYSLVYGAEAVLPVEVEIPSLRVLMETKLEDAEWVRSCYEQLNLIEEKRLAAL CHGQMYQRRMMRAYEKKVHPKQFREGELVLKRILPNQTDFRGKWMPNWEGPYVVKKAF SGGALILADMDGGDLPNPINADAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX C" mobile_element 2130745..2131231 /note="source:CACAO_on_E459_scaffold_2 2062 2549" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2131231..2135965) /note="source:INTACT117_F146_scaffold_2-int 10222 12898" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2136616..2137572) /note="source:CACAO_M_E72756_F4_scaffold_10 1 958" /mobile_element_type="retrotransposon:LTR/Copia" gene 2137095..2139475 /locus_tag="TCM_012305" /note="dbxref CacaoGD:Thecc1EG012305" mRNA join(2137095..2137202,2138668..2139475) /locus_tag="TCM_012305" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012311t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022205001" /note="quality class is medium-utrpoor, express is none, homology is paralog strong, intron is none, protein is utrpoor_complete" CDS 2139058..2139291 /locus_tag="TCM_012305" /note="paralog of Thecc1EG012311t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20988.1" /db_xref="Phytozome:GSVIVT01022205001" /translation="MNRMVDETNLAKLTYLDLVVKETLGLHPVAPLLIPHQSIEDITI DGYHIPKKSRILVNIWQWDEIPICGQTTSKNSF" gene 2141630..2142433 /locus_tag="TCM_012306" /note="dbxref CacaoGD:Thecc1EG012306" mRNA 2141630..2142433 /locus_tag="TCM_012306" /product="Cytochrome P450, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012311t1" /inference="similar to AA sequence:Phytozome:Glyma07g09900.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS 2141658..2142284 /locus_tag="TCM_012306" /note="paralog of Thecc1EG012311t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY20989.1" /db_xref="Phytozome:Glyma07g09900.1" /db_xref="TAIR:AT3G48310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HFW7" /translation="MCPSTYALLLAFLDLLSSLLYILRSTSRPKHSKDHRKLPPAPWA LPIIGNLHMLGKLPDRTLHHLAQKYGSMMSIRLVYVPTVVVSSPEAAELFLKTHDTIF ASRPKVQVFEYLSYGTKGLAFAQYGSYWCTVRKWCTLQLLSASKVEFFTPVRRTELQS SVKLLKNVAAAGEVVDLNSKVGELIEDIMYMMILGRCKYDKLDFKPLV" mobile_element 2142529..2145827 /note="source:CACAO_M_E12150_F85_scaffold_3 1 3299" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2145621..2146775 /locus_tag="TCM_012307" /note="dbxref CacaoGD:Thecc1EG012307" mRNA join(2145621..2146306,2146388..2146775) /locus_tag="TCM_012307" /product="Ferulic acid 5-hydroxylase 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008262001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012311t1" /inference="similar to AA sequence:frave:gene34445" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(2145815..2146306,2146388..2146612) /locus_tag="TCM_012307" /note="dbxref frave:gene34445; paralog of Thecc1EG012311t1" /codon_start=1 /product="Ferulic acid 5-hydroxylase 1, putative" /protein_id="EOY20990.1" /db_xref="TAIR:AT4G36220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HFW2" /translation="MEYFKIIDEHEKLNKGQQKQHRDFVDVMLSYLNQPMNPNDEEQT YIIDQTNIKAIILDMIATALKTSTIVIEWVLAEIIRHPRVKSRLQKELETVVGMNRIV EEANLANLTYLDMVIKESLRLHPVAPLLIPHESMEDVTIHGYYISKKSQILINISTIR RDPNLIPFGSGRKGCPGLQLGLTTVRLVLAQLVHCFEWELPHGMLPNDLSISERSRLT APRAQQLLAKPVYRLPDKRL" gene 2147077..2148236 /locus_tag="TCM_012308" /note="dbxref CacaoGD:Thecc1EG012308" mRNA 2147077..2148236 /locus_tag="TCM_012308" /product="Ubiquitin fusion degradation UFD1 family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012323t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s24900.2" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS 2147174..2148091 /locus_tag="TCM_012308" /note="paralog of Thecc1EG012323t1" /codon_start=1 /product="Ubiquitin fusion degradation UFD1 family protein" /protein_id="EOY20991.1" /db_xref="Phytozome:POPTR_0001s24900.2" /db_xref="TAIR:AT2G29070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQW3" /translation="MERSDLEAVAAAAAAAMELDSSFQLTYRCSASRVELGNRILMPL SAFDSLVDKGVESPWLFELCNPVTGKTSHCGVLEFTSDEGFVLLPAPMMESMELEEGE LATLKSASLDKGTFLKLQPHTKNFMQLSDPKAVLEKAFRDFCCLTTGDTIMIMHNDIK LYIDIVEAKPSLAVNIIDTDCEVDFALPLDYEPPQKKQKKAKLLQKQEQPIEAETVKF KAFNGIARRLDGEPVTEQVAVDDDHDSMMNAERKPCGSKKVVLGSNVIQCQEDSTGEP SRKGWQEVTNMKKEEEKFQPFTGRSYRLT" mobile_element 2150047..2150132 /note="source:CACAO_Again_on_E100_scaffold_4 4719 4804" /mobile_element_type="transposon:TIR/hAT" mobile_element 2153552..2154610 /note="source:CACAO_M_E56825_F323_scaffold_8 1 1054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2161406..2161700 /note="source:CACAO_M_E12773_F323_scaffold_3 687 980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2161880..2162765 /note="source:INTACT642F_F365_scaffold_5-int 1 860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2163775..2164191 /note="source:CACAO_M_E35429_F244_scaffold_5 1 418" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2165906..2181626) /locus_tag="TCM_012310" /note="dbxref CacaoGD:Thecc1EG012310" mRNA complement(join(2165906..2166074,2170529..2170685, 2171092..2171238,2173271..2173553,2181321..2181626)) /locus_tag="TCM_012310" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.27 coverage" mobile_element 2166917..2169478 /note="source:CACAO_M_E44150_F74_scaffold_5 2034 4595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2169165..2169524) /note="source:INTACT190_F166_scaffold_7-int 3715 4073" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2170072..2172213 /note="source:CACAO_M_E12153_F42_scaffold_3 1 2142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2172314..2173203 /note="source:CACAO_M_E12153_F42_scaffold_3 2143 3032" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(2173320..2173532) /locus_tag="TCM_012310" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20992.1" /translation="MPAVEREKDKEPINDFFFLGKILSFGGYRLRESEKTSEREALGL VAGGHREGRSFEIAGERREIRLGGGH" mobile_element 2174221..2177704 /note="source:CACAO_Helitron_E81_scaffold_3 1 3484" /mobile_element_type="transposon:Helitron" gene 2181721..2183944 /locus_tag="TCM_012311" /note="dbxref CacaoGD:Thecc1EG012311" mRNA join(2181721..2182599,2182729..2183944) /locus_tag="TCM_012311" /product="Cytochrome P450 superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g31850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046736t1" /inference="similar to AA sequence:frave:gene34445" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1145t1" CDS join(2181901..2182599,2182729..2183568) /locus_tag="TCM_012311" /note="dbxref frave:gene34445; paralog of Thecc1EG046736t1" /codon_start=1 /product="Cytochrome P450 superfamily protein" /protein_id="EOY20993.1" /db_xref="TAIR:AT5G07990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HFW7" /translation="MCPSTYALLLAFLATLISVLYILRSTSQPKHSKNDRKLPPGPWA LPIIGNLHMLGKLPHRTLHHLAQKYGSIMSIRLGYVPTIVVSSPQAAELFLKTHDTIF DSRPKVQGSEYLSYGTKGLAFAQYGSYWRTVRKWCTLQLLSASKVEFFAPKRRTELQS LVKLLKNAAAASEVVDLSAKVGELIEDIMYRMILGRCKDDKFDLKPLIHEGIRLLGTF NLADFVPFLAPLDLQGLRQRFESVRKACDKFLEEIIDEHEKLNKGQQKQHRDFVDFML SYLNQPMNPNDEEQTYIIDRTNIKAIILDMIAAALETSAVVIEWALAEIIRHPRVKSR LQKELEAVVGMNRMVEEADLANLTYLDMVIKESLRLHPVAPLLIPHESMEDVTINGYH IPKKSRILINIWAIGRDPNVWSDNVEDFLPERFVGSNVDLRGHDFQLIPFGSGRRGCP GLQLGLTTVRLALAQLVHCFEWELPNGMLPNDLSMSEKFGLSAPRAEHLLARPVYRLP DKRL" gene 2183824..2185183 /locus_tag="TCM_012312" /note="dbxref CacaoGD:Thecc1EG012312" mRNA join(2183824..2184230,2184326..2185183) /locus_tag="TCM_012312" /product="Ubiquitin fusion degradation UFD1 family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g05030.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012308t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s24900.2" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc190t1" CDS join(2184122..2184230,2184326..2185038) /locus_tag="TCM_012312" /note="paralog of Thecc1EG012308t1" /codon_start=1 /product="Ubiquitin fusion degradation UFD1 family protein" /protein_id="EOY20994.1" /db_xref="Phytozome:POPTR_0001s24900.2" /db_xref="TAIR:AT2G29070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQW3" /translation="MERSDLEAVAAAAAAAMELDSSFQLTYRCSASRVEFGKTSHCGV LEFTSDEGFVLLPAPMMESMELEEGELVTLKSASLDKGTFLKLQPHTKNFMQLSDPKA VLEKAFRDFCCLTTGDTIMIMHNDIKFYIDIVEAKPSLAVNIIDTDCEVDFALPLDYE PPQKKQKKAKVLQKQEQPIEVETVKFKAFNGIARRLDGEPVTEQVAVDDDHDWMMNAE RKPCGSKKVVLGSNVIQSQEDSTDEPSRKGRQEETNMKTEEEKFQPFTGRSYRLT" mobile_element 2186704..2186881 /note="source:CACAO_Again_on_E100_scaffold_4 59 266" /mobile_element_type="transposon:TIR/hAT" mobile_element 2186873..2187050 /note="source:CACAO_Again_on_E100_scaffold_4 113 315" /mobile_element_type="transposon:TIR/hAT" mobile_element 2187040..2187116 /note="source:CACAO_Again_on_E100_scaffold_4 4731 4804" /mobile_element_type="transposon:TIR/hAT" gene 2190291..2193012 /locus_tag="TCM_012313" /note="dbxref CacaoGD:Thecc1EG012313" mRNA join(2190291..2191014,2192055..2193012) /locus_tag="TCM_012313" /product="Cytochrome P450" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046736t2" /inference="similar to AA sequence:frave:gene34445" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc856t10" CDS join(2190787..2191014,2192055..2192897) /locus_tag="TCM_012313" /note="dbxref frave:gene34445; paralog of Thecc1EG046736t2" /codon_start=1 /product="Cytochrome P450" /protein_id="EOY20995.1" /db_xref="TAIR:AT4G36220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HFW7" /translation="MVETVKKAAAAGETLDISGKVGEVIEDIMYKMIFGRPSNSEDDN LNLKLLIKEISRLAGAFNLSDFVPCLAPLDLQLKKVSKILDKFMEKIIDEHEQAAGSN PEEQKPHRIFVHVMVSLLDKPMNPHEKEQDFIIDKTNIKAIMLDMISGALETSAIAIE WALSELLRHPRVMFGLQQELKIVVGRSRMVEESDLPPLTYLAMVVKESLRLHPIGPLL IPHKSMEDIMIDGYFIPKKSRIIVNTWSIGRDPDVWSNNAEEFFPERFIDSNIDLRGQ DFQLIPFGSGRRGCPGMQLGLITIRLVSAQLVHCFDWELPVELDMSEKFGLSMPRANP FLVKATYRYLIIECKINRKKRI" mobile_element 2193795..2194121 /note="source:CACAO_Again_on_E100_scaffold_4 81 319" /mobile_element_type="transposon:TIR/hAT" mobile_element 2194633..2194707 /note="source:CACAO_Again_on_E100_scaffold_4 4731 4802" /mobile_element_type="transposon:TIR/hAT" gene 2195662..2203298 /locus_tag="TCM_046736" /note="dbxref CacaoGD:Thecc1EG046736" mRNA join(2195662..2195978,2199798..2200273,2202389..2203298) /locus_tag="TCM_046736" /product="Cytochrome P450 superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_2998s00200.1" /inference="alignment:exonerate- protein:2:ricco:30174.m008711.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012311t1" /inference="similar to AA sequence:frave:gene34445" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01805t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1220t1; inference alignment:Newbler:10:TSA:cgbaP1_g02750t00001" CDS join(2195696..2195978,2199798..2200273,2202389..2203237) /locus_tag="TCM_046736" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene34445; paralog of Thecc1EG012311t1" /codon_start=1 /product="Cytochrome P450 superfamily protein, putative isoform 1" /protein_id="EOY20996.1" /db_xref="TAIR:AT5G07990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HFW7" /translation="MLFKLLGTALSQPHIDESPAHMSPSALALLLILLGTLCSFIYVS RPKRLKNGRKLPPGPRPLPVIGNLHLLGKLPHLNLHHLAKRYGPIMLLRLGYVPTIVV SSPQAAELFLKTHDVVFASRPKVQACEYLSYGGKGMGFTEYGSYWRTVRKWCTLHLLS GSKVEYFAPLRKAELGSMVETVKKAAAAGETVDISGKVGEVIEDIMYKMIFGRPSNSE DDNINLKLLIKEISRLAGAFNLSDFVPCLAPLDLQGLAQKQKRISKILDKFLEKIIDE HEQAVGSNPEEQKPHRNFVHVMVSLLNKPMNPHDEEQEYIIDRTNIKAIMLEMIAAGL ESSAAAIEWALSELLKHPRVMFSLQQELETVVGRSRMVEESDLPQLTYLDVVVKESLR LHPVGPLLIPHESMEDITIDGYFIPKKSRIIVNAWSMGRDPDVWSNNAEEFFPERFID SNIDLRGQDFQLIPFGSGRRGCPGMQLGLITIRLVLAQFVHCFDWELPDGMLPVQLDM SENFGLSMSRANPLLVKATYRLLDNRL" mRNA join(2195730..2195758,2199578..2200273,2202389..2203298) /locus_tag="TCM_046736" /product="Cytochrome P450 superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30174.m008711.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012311t1" /inference="similar to AA sequence:frave:gene34445" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01805t00002; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1220t1; inference alignment:Newbler:10:TSA:cgbaP1_g02750t00001" mobile_element 2196550..2196707 /note="source:CACAO_Again_on_E100_scaffold_4 81 266" /mobile_element_type="transposon:TIR/hAT" mobile_element 2196698..2196876 /note="source:CACAO_Again_on_E100_scaffold_4 113 297" /mobile_element_type="transposon:TIR/hAT" gene 2197717..2198842 /locus_tag="TCM_012315" /note="dbxref CacaoGD:Thecc1EG012315" mRNA 2197717..2198842 /locus_tag="TCM_012315" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.74 coverage" CDS 2198421..2198729 /locus_tag="TCM_012315" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20998.1" /translation="MGKGKKEGVVAENAQFGKGDGIRGQVREKGFRETGWLLGSVGEE EEEESKNEEKGKGLPATFRENQNHVVLWIQKEEKEEVGWIHSSPNRCNFRFSQFILFI " mobile_element complement(2198875..2199451) /note="source:CACAO_Helitron_E81_scaffold_3 2558 3108" /mobile_element_type="transposon:Helitron" CDS join(2199578..2200273,2202389..2203237) /locus_tag="TCM_046736" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene34445; paralog of Thecc1EG012311t1" /codon_start=1 /product="Cytochrome P450 superfamily protein, putative isoform 2" /protein_id="EOY20997.1" /db_xref="TAIR:AT5G07990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HFW7" /translation="MSPSTLALLLILLGTLCSFIYISRPKQLKNGRKHPPGPRPLPVI GNLHLLGKLPHLNLHHLAKRYGHIMLLRLGYVPTIVVSSPQAAELFLKTHDVVFASRP KVQACEYLSYGGKGMGFTEYGSYWRTVRKWCTLHLLSGSKVEYFAPLRKAELGSMVET VKKAAAAGETVDISGKVGEVIEDIMYKMIFGRPSNSEDDNINLKLLIKEISRLAGAFN LSDFVPCLAPLDLQGLAQKQKRISKILDKFLEKIIDEHEQAVGSNPEEQKPHRNFVHV MVSLLNKPMNPHDEEQEYIIDRTNIKAIMLEMIAAGLESSAAAIEWALSELLKHPRVM FSLQQELETVVGRSRMVEESDLPQLTYLDVVVKESLRLHPVGPLLIPHESMEDITIDG YFIPKKSRIIVNAWSMGRDPDVWSNNAEEFFPERFIDSNIDLRGQDFQLIPFGSGRRG CPGMQLGLITIRLVLAQFVHCFDWELPDGMLPVQLDMSENFGLSMSRANPLLVKATYR LLDNRL" mobile_element 2200651..2201672 /note="source:INTACT135F_F90_scaffold_2-int 12864 14003" /mobile_element_type="retrotransposon:LTR/Copia" gene 2203981..2206580 /locus_tag="TCM_012316" /note="dbxref CacaoGD:Thecc1EG012316" mRNA join(2203981..2204012,2204743..2204786,2205578..2206580) /locus_tag="TCM_012316" /product="Cytochrome P450" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400068619" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046736t1" /inference="similar to AA sequence:frave:gene34445" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage" mobile_element complement(2204105..2204459) /note="source:CACAO_on_SS_E42_scaffold_2 24154 24521" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2204304..2204481) /note="source:CACAO_hAT_E1553_scaffold_4 1036 1220" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2204493..2204837) /note="source:CACAO_on_SSS_E94_scaffold_6 136 468" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2204744..2204849 /note="source:CACAO_Mariner_E220_scaffold_9 15033 15142" /mobile_element_type="transposon:TIR/Tc1-Mariner" CDS join(2204754..2204786,2205578..2206411) /locus_tag="TCM_012316" /note="dbxref frave:gene34445; paralog of Thecc1EG046736t1" /codon_start=1 /product="Cytochrome P450" /protein_id="EOY20999.1" /db_xref="TAIR:AT2G45570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTJ6" /translation="MLPFLGELGSTGLARKLKRLSKILDKFLEKIIDEHEQALGSNRE EQKPHRNFVLVIVSLLNKPMNPHDKEQEFIIGRTNIKAIMLDMIVAALDTSTTTIEWA LSELLRHPRVMFGLQQELETVVGRSKMVEESDLPKLTYLDMVVKESLRLHPVAPFLVP HESMEDIMIDGYFIPKKSQIIVNTWSIGRDPDVWSNNAEEFFPERFIDNNIDLRGHEF QLTPFGSSRRGCPGMQLGPITVHLILAQLVHCFDWELPVELDMSEKFGHSMPRANPLL VKATYRLLDKRM" gene 2206597..2211628 /locus_tag="TCM_012317" /note="dbxref CacaoGD:Thecc1EG012317" mRNA join(2206597..2206736,2209549..2210284,2210672..2211628) /locus_tag="TCM_012317" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:ricco:30174.m008711.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012311t1" /inference="similar to AA sequence:ricco:30174.m008711" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1133t1" mobile_element 2207892..2208177 /note="source:CACAO_on_E681_scaffold_9 42 328" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(2209589..2210284,2210672..2211511) /locus_tag="TCM_012317" /note="dbxref ricco:30174.m008711; paralog of Thecc1EG012311t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY21000.1" /db_xref="TAIR:AT3G26300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HFW7" /translation="MSPSAAALVQVLGFLCSFFYILSYISSRLDGRGKRRLPPAPRGL PIIGNLHMLGKLPHQALYHLAKVYGPMMSIRLGTVPAVVISSPRFAELFLKTHDTIFA GRPRIQVVQVFSYGFKGMAFAGYGSYWRSVRKLYNVQLLSASKIESLAPMRREMVSLL VESLKKDAAAQKVVNLSEKLGALIEDMTLRMVIGHMKYDQFNLKELVQEVTSLAGAFN LADYVPFLGALDLQGLRPRIKAASGALDKALENIIDEHELKNIHEQQKQQRDFVDLML TMLNQPMNPHDDPMYIVDRTTIKAIIVDLITGGLDTTTTTIEWAVTELIRNPRAMQHL QRELQSFVGIYRTVEEIDLPKLTYLDMVVKETLRLHPVAPLLVPHESMEDTTIDGYYI PKKSRILVNVWAIGRDPDVWSNNVEEFFPERFIDSNIDLRGHDFELIPFGAGRRMCPG MKLGLTTVKFVLAQLVHCFDWELPDGMLPEELDTSEKFGLSLPRSSHLYAKPIYRLLE KSM" gene 2212477..2219191 /locus_tag="TCM_012318" /note="dbxref CacaoGD:Thecc1EG012318" mRNA join(2212477..2213457,2214238..2214355,2215058..2215287, 2215394..2215633,2216229..2216382,2216482..2216567, 2218006..2218120,2218214..2218286,2218789..2219191) /locus_tag="TCM_012318" /product="Eukaryotic aspartyl protease family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30174.m008702" /inference="similar to AA sequence:ricco:30174.m008702" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc685t5_C2" mRNA join(2212837..2213457,2214238..2214355,2215058..2215287, 2215394..2215633,2216229..2216382,2216482..2216567, 2218006..2218286,2218789..2218993) /locus_tag="TCM_012318" /product="Eukaryotic aspartyl protease family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30174.m008702" /inference="similar to AA sequence:ricco:30174.m008702" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc685t8_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc685t5_C2" CDS join(2212862..2213457,2214238..2214355,2215058..2215287, 2215394..2215633,2216229..2216382,2216482..2216567, 2218006..2218120,2218214..2218286,2218789..2218907) /locus_tag="TCM_012318" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30174.m008702" /codon_start=1 /product="Eukaryotic aspartyl protease family protein, putative isoform 1" /protein_id="EOY21001.1" /db_xref="TAIR:AT1G49050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N096" /translation="MDSDERPQQVTGVVIITLPPSDNPSLGKTITAFTLTNDVFPQSH QTQQRQQQEEEQTLPTTQILTPAPPSAQNPQRGFSFLGLFSDNPRKLLGFLGISLFAL LLYSSAFSNTFVELRNSNNDDDEKPQSFIFPLYHKLGADLELKLGRFVDVDKENLVAS VEGGATGTQKINKLVASNAAVIDSSGTILPVRGNVYPDGLYFTYMLVGNPQRRYFLDI DTGSDLTWIQCDAPCSSCAKGANPLYKPTRVNIVASKDLMCTEVQKNQKPQNCETCQQ CDYEIEYADRSSSLGVLARDELHLVTANGSTTNLDVVFGCAYDQQGILLNTLSKTDGI LGLSRAKVSLPSQLASKGIINNVVGHCLATDVGASGYMFLGDDFVPNWGMSWVPMLGS PSTEFYHTQIVKINYGSSSLSLGRQHSSIGRVVFDSGSSYTYFMKQAYAELVASLSEV SEVGFIQDVADTTLPMCWQAPFPIRFIKDVKQFFKTLTLQFGSKWWIISKRFHIPPEG YLIISKKGNVCLGILDGSKVHDGSTIILGDISLRGQLVVYDNEKLKIGWTQSDCAHPR RFKSLPFVEG" CDS join(2212862..2213457,2214238..2214355,2215058..2215287, 2215394..2215633,2216229..2216382,2216482..2216567, 2218006..2218144) /locus_tag="TCM_012318" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30174.m008702" /codon_start=1 /product="Eukaryotic aspartyl protease family protein, putative isoform 2" /protein_id="EOY21002.1" /db_xref="TAIR:AT1G49050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N096" /translation="MDSDERPQQVTGVVIITLPPSDNPSLGKTITAFTLTNDVFPQSH QTQQRQQQEEEQTLPTTQILTPAPPSAQNPQRGFSFLGLFSDNPRKLLGFLGISLFAL LLYSSAFSNTFVELRNSNNDDDEKPQSFIFPLYHKLGADLELKLGRFVDVDKENLVAS VEGGATGTQKINKLVASNAAVIDSSGTILPVRGNVYPDGLYFTYMLVGNPQRRYFLDI DTGSDLTWIQCDAPCSSCAKGANPLYKPTRVNIVASKDLMCTEVQKNQKPQNCETCQQ CDYEIEYADRSSSLGVLARDELHLVTANGSTTNLDVVFGCAYDQQGILLNTLSKTDGI LGLSRAKVSLPSQLASKGIINNVVGHCLATDVGASGYMFLGDDFVPNWGMSWVPMLGS PSTEFYHTQIVKINYGSSSLSLGRQHSSIGRVVFDSGSSYTYFMKQAYAELVASLSEV SEVGFIQDVADTTLPMCWQAPFPIRFIKDVKQFFKTLTLQFGSKWWIISKRFHIPPEG YLIISVRTSPTT" gene complement(2219352..2227766) /locus_tag="TCM_012319" /note="dbxref CacaoGD:Thecc1EG012319" mRNA complement(join(2219352..2219977,2220611..2220677, 2220769..2220908,2221027..2221119,2221548..2221730, 2222704..2222808,2223440..2223520,2223641..2223782, 2224082..2224161,2225045..2225157,2225834..2226080, 2226675..2227089,2227478..2227766)) /locus_tag="TCM_012319" /product="Phosphatase 2A subunit A2, 65,PP2AA2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g10000.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011838t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008268001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05323t00001" CDS complement(join(2219858..2219977,2220611..2220677, 2220769..2220908,2221027..2221119,2221548..2221730, 2222704..2222808,2223440..2223520,2223641..2223782, 2224082..2224161,2225045..2225157,2225834..2226080, 2226675..2227067)) /locus_tag="TCM_012319" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011838t1" /codon_start=1 /product="Phosphatase 2A subunit A2, 65,PP2AA2 isoform 1" /protein_id="EOY21003.1" /db_xref="Phytozome:GSVIVT01008268001" /db_xref="TAIR:AT3G25800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A4S055" /translation="MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEER TRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCV RDKAVESLCRIGAQMREQDLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPDAL KTELRAIYSQLCQDDMPMVRRSAATNLGKFAATVEAPHLKVDIMSMFDDLTQDDQDSV RLLAVEGCAALGKLLESQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP TRSDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPELAIQHILPCVKELSTDSSQH VRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVY SIRDAAANNVKRLAEEFGPQWAMQHIVPQVLDMINNPHYLYRMTILHAISLLAPVMGP EIICSNLLPLVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKTIRPCLVELSEDPD VDVRFFAGQALESSDQVMMSS" mRNA complement(join(<2219949..2219977,2220611..2220677, 2220769..2220908,2221027..2221119,2221548..2221727, 2224126..2224161,2225045..2225157,2225834..2226080, 2226675..2227089,2227478..2227707)) /locus_tag="TCM_012319" /product="Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g10000.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011838t1" /inference="similar to AA sequence:Phytozome:Sb10g023610.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc332t11; inference alignment:Newbler:10:TSA:cgbaB_g05323t00001" CDS complement(join(<2219951..2219977,2220611..2220677, 2220769..2220908,2221027..2221119,2221548..2221727, 2224126..2224161,2225045..2225157,2225834..2226080, 2226675..2227067)) /locus_tag="TCM_012319" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011838t1" /codon_start=1 /product="Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform 2" /protein_id="EOY21004.1" /db_xref="Phytozome:Sb10g023610.1" /db_xref="TAIR:AT3G25800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P30154" /translation="MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEER TRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCV RDKAVESLCRIGAQMREQDLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPDAL KTELRAIYSQLCQDDMPMVRRSAATNLGKFAATVEAPHLKVDIMSMFDDLTQDDQDSV RLLAVEGCAALGKLLESQDCVAHILPVIVNFSQDKSWRVRYMVANIGIDLLSQSLLPA IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANN VKRLAEEFGPQWAMQHIVPQVLDMINNPHYLYRMTILHAISLLAPVMGPEIICSNLLP LVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKTIRPC" mobile_element complement(2227767..2228053) /note="source:scaffold_1_CACTA_0008 7163 7370" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2228005..2228089 /note="source:INTACT383F_F354_scaffold_3-int 795 870" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(2229275..2229349) /note="source:scaffold_9_CACTA_0936 349 423" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2229391..2229447) /note="source:CACAO_M_E23991_F4_scaffold_4 7919 7972" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2229422..2229558) /note="source:CACAO_M_E12463_F12_scaffold_3 4563 4748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2231971..2232101) /note="source:CACAO_M_S_E14849_F156_scaffold_2 659 790" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2232327..2236806) /locus_tag="TCM_012321" /note="dbxref CacaoGD:Thecc1EG012321" mRNA complement(join(2232327..2233610,2234403..2234549, 2234641..2234777,2234870..2235139,2235235..2235372, 2236275..2236806)) /locus_tag="TCM_012321" /product="Aluminum-activated malate transporter 9" /inference="alignment:exonerate- protein:2:ricco:28049.m000297" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011837t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06340.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1184t3" CDS complement(join(2232918..2233610,2234403..2234549, 2234641..2234777,2234870..2235139,2235235..2235372, 2236275..2236641)) /locus_tag="TCM_012321" /note="paralog of Thecc1EG011837t1" /codon_start=1 /product="Aluminum-activated malate transporter 9" /protein_id="EOY21005.1" /db_xref="Phytozome:POPTR_0015s06340.1" /db_xref="TAIR:AT3G18440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LS46" /translation="MAAKLGSFRYSLLEKRERTKGYPVLGFTYEEGEEEQGQGWRCFS YRFISDKITGFWKDVQDVAGEAWQMGKSDPRKIIFSAKMGLALMLISFLIFLKEPFKE LSQYSVWAILTVVVVFEFSIGATLSKGFNRGLGTLSAGGLALGMAELSELAGEWEEVV IVISIFIIGFFATYAKLYPTMKPYEYGFRVFLLTYCFITVSGYRTGDFLHTAVTRFLL IALGASVCLVVNICIYPIWAGEDLHNVVAKNFMSVATSLEGCVKGYLNCVEYERVPSK ILTYQASDDPVYNGYRSAVQSSSQEEALMGFAIWEPPHGRYRSFGYPWKNYAKVSGAL RHCAFMVMALHGCILSEIQAPPERRQVFRLELQRVGAEGARVLRELGNKVKMMEKLGL IDILYEVHDAAEELQNKVDRKSYLLVNAESWEIGNRPESPAEPQDLLNLDSEEHKVLG YKSLSEAVLDLRSVTIPNNWDGQKTHVGVNPTVPPGASSSEDLFKKQISMPARTSFIA DTVPLEESKTYENASALSLATFTSLLIEFVARLQNVVDAFEELSEKANFKEPDELPAA ARQPIGLCSRLFRCLKF" gene complement(2237576..2242036) /locus_tag="TCM_012322" /note="dbxref CacaoGD:Thecc1EG012322" mRNA complement(join(2237576..2238328,2238424..2238505, 2240729..2240745,2241466..2241541,2241634..2242036)) /locus_tag="TCM_012322" /product="Copper transport protein family" /inference="alignment:exonerate- protein:2:ricco:28049.m000296" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011828t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008271001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2415t3_C2" CDS complement(join(2238090..2238328,2238424..2238505, 2240729..2240745,2241466..2241541,2241634..2241738)) /locus_tag="TCM_012322" /note="paralog of Thecc1EG011828t1" /codon_start=1 /product="Copper transport protein family" /protein_id="EOY21006.1" /db_xref="Phytozome:GSVIVT01008271001" /translation="MASWVKKLSRPRVTNCRFRLRFSSPASISCPPKPLEVVLAANLG CTRCQKRVADAISRIDGEGRDRFCCMVMKINIDCNGCYRKVRRALLDIQELDTHLIEK KQCRVSVCGRFIPQDIAIKIRKKTNRRVEILEIQEFNIDNEQISHEEKALISSWNPES NQNHVATCVTCT" mobile_element complement(2242602..2242637) /note="source:scaffold_10_CACTA_0130 1137 1195" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2242620..2242676 /note="source:CACAO_M_S_E144734_F98_scaffold_10 521 577" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2242638..2242682) /note="source:CACAO_M_E52955_F369_scaffold_8 980 1024" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2242907..2244186) /locus_tag="TCM_012323" /note="dbxref CacaoGD:Thecc1EG012323" mRNA complement(2242907..2244186) /locus_tag="TCM_012323" /product="Ubiquitin fusion degradation UFD1 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s24900.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012308t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s24900.2" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(2243190..2244092) /locus_tag="TCM_012323" /note="paralog of Thecc1EG012308t1" /codon_start=1 /product="Ubiquitin fusion degradation UFD1 family protein" /protein_id="EOY21007.1" /db_xref="Phytozome:POPTR_0001s24900.2" /db_xref="TAIR:AT2G29070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQW3" /translation="MEPSDLEAVAAAMRLDHSFQHTYRCSSSRFEFGNRILMPLSAFD SLVDKGVESPWLFELCNLVTGKTSYCGVLEFTSDEGFVLLPRQMMESMELEEGELVTL TSASLDKGTFLKLQPHTKNFMQLSNPRAVLEIAFRDFCCLTTGDTIMIMYNNIKFYID IVETKPSLAVNIIDTDCEVDFALPLDYEPPQEEQKKPKVLQKQKQPIEEVTVKFKAFN GIARRLDGEPVTEHVAVDDDDSMMNAKRKPCGSNKVVLGSNVIQSQEDSTGEPSRKGR QEETNMKKEEEKFQPFTGRSYRLT" mobile_element 2244456..2244535 /note="source:CACAO_M_E57469_F369_scaffold_9 1226 1302" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2244696..2245806 /locus_tag="TCM_012324" /note="dbxref CacaoGD:Thecc1EG012324" mRNA join(2244696..2245088,2245182..2245244,2245365..2245806) /locus_tag="TCM_012324" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06400.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06360.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1156t1" CDS join(2244731..2245088,2245182..2245244,2245365..2245525) /locus_tag="TCM_012324" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative" /protein_id="EOY21008.1" /db_xref="Phytozome:POPTR_0015s06360.1" /db_xref="TAIR:AT1G73890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N091" /translation="MAALNSLSHIPFTSIVMLLLFVATHPTALSQDPITPGPTIADCS PRLVALMPCAPFVQGTAQMPAQSCCDNLNQLYTLQPGCLCLLLNDTTLSDFPINRTRA LQLPVLCKLQANASACSGVPSPPGSEVSLGAQHNSSVAASPMVHPTVPVAPRPSIMGL GFSRSNAGRLKTKGLSTMVTFAAILLSKLALLY" gene complement(2246304..2248456) /locus_tag="TCM_012325" /note="dbxref CacaoGD:Thecc1EG012325" mRNA complement(join(2246304..2246832,2247964..2248456)) /locus_tag="TCM_012325" /product="AT-rich interactive domain-containing protein 5A, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008273001.2" /inference="similar to AA sequence:ricco:28049.m000294" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8139t1" CDS complement(join(2246659..2246832,2247964..2248428)) /locus_tag="TCM_012325" /note="dbxref ricco:28049.m000294" /codon_start=1 /product="AT-rich interactive domain-containing protein 5A, putative" /protein_id="EOY21009.1" /db_xref="TAIR:AT1G73885.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L713" /translation="MALTMTISHGSSTGGGNGVRILCGNPTKQSYTRLPPRRRVLFPT SPRILHLTTFAAKKFSPRTGRFDSKNRRSALTTKEQDEEQEQKQRTAEIEEQNVVVGV GFDNVGGSSSEVSADGKPFPELPGLQPALWEGPQWDVLGFLVQYLWAFGIVFALIACG IAVSTYNEGATDFKETPAYKESIQSQELLEEPEASNSDVFELNPTEVAPSLE" gene complement(2249448..2250456) /locus_tag="TCM_012326" /note="dbxref CacaoGD:Thecc1EG012326" mRNA complement(2249448..2250456) /locus_tag="TCM_012326" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:28049.m000293" /inference="similar to AA sequence:ricco:28049.m000293" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1463t1" CDS complement(2249495..2250184) /locus_tag="TCM_012326" /note="dbxref ricco:28049.m000293" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21010.1" /db_xref="TAIR:AT1G13360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N088" /translation="MAMEDNKANKKRAREESEGNQLEANSVSNLKLPRVDSADTGFDS PESTIVEPHLDDGNVQSPEVKRIQEDLLNLLDDSDPVIGPDPAIQGLESVIKSFEEEI LVPTQAPAPAMTSDSGEFRPVLGFLLEASDDELGLPPSFSSVEEELNLGTVALEESVG SGAVGIGEMMGYEFPIPSFEPYEFGIGGVSDTNNNNYSNSSDFVALGSLFEPATDISE LTWRPESLSAL" gene complement(2253458..2254696) /locus_tag="TCM_012327" /note="dbxref CacaoGD:Thecc1EG012327" mRNA complement(join(2253458..2253793,2254101..2254696)) /locus_tag="TCM_012327" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(2253690..2253793,2254101..2254224)) /locus_tag="TCM_012327" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21011.1" /translation="MVMNDVALCMKSVNEEVGSAWKIRLLRKVVLGIAYVAKDGRGSF GGYFIMDDDDDDDGVEMDPTTTICRSRDGPI" mobile_element complement(2266810..2267321) /note="source:scaffold_4_CACTA_0510 2108 2631" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2267213..2267341 /note="source:CACAO_Mariner_E220_scaffold_9 8852 8986" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 2269088..2270042 /locus_tag="TCM_012328" /note="dbxref CacaoGD:Thecc1EG012328" mRNA 2269088..2270042 /locus_tag="TCM_012328" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage" CDS 2269258..2269794 /locus_tag="TCM_012328" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21012.1" /translation="MELGFQGQLIGFYSSSSSSSGAAFKSKTPLSSTASFVLLSLSSA MPSLASASSSASTTALSASTAALHPSPLPFSKYLTTTLILLNIAKNSSTSSSLASSSF LTLFFFSITTPSMLSFSLLFLFSFSILLKLSHTNFFCFFFFFFFLLFYFFFLMLNKTQ KKKKTPRIFSDFESDFLY" mobile_element 2273470..2273582 /note="source:scaffold_1_CACTA_0016 6332 6442" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2274978..2275577 /note="source:CACAO_Helitron_E81_scaffold_3 2557 3108" /mobile_element_type="transposon:Helitron" gene complement(2276441..2280245) /locus_tag="TCM_012329" /note="dbxref CacaoGD:Thecc1EG012329" mRNA complement(join(2276441..2277659,2278186..2278272, 2278568..2278770,2279752..2280245)) /locus_tag="TCM_012329" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031911t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(join(2278770,2279752..2280227)) /locus_tag="TCM_012329" /note="paralog of Thecc1EG031911t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21013.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AR50" /translation="MSQLKERRFKETGWLLGSIVGVQISNGLKTISNVFYALEVSQNP LNVGQLVDDGYKLTFRDRACTMKDSVGIELLTVGMRNKCFPLDWMKVNHATYKCTLTN AALWHNRFGYVSYGSLMQMASNDMVVSLPRITKSNKVYDICQFGRQKREPFPKTGS" mobile_element 2280918..2280995 /note="source:CACAO_Helitron_E81_scaffold_3 3407 3484" /mobile_element_type="transposon:Helitron" mobile_element complement(2280997..2281318) /note="source:CACAO_M_E69780_F2_scaffold_9 493 814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2281318..2281702) /note="source:CACAO_M_E34519_F2_scaffold_5 1 386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2281850..2282864 /note="source:INTACT61_F128_scaffold_2-int 1 1032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2282663..2283451 /note="source:CACAO_on_E205_scaffold_7 3522 4351" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2282865..2283046) /note="source:CACAO_Mutator_E1149_scaffold_5 5725 6932" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2283989..2284446 /note="source:CACAO_on_E205_scaffold_7 4720 5135" /mobile_element_type="transposon:TIR/Mutator" gene 2288025..2289928 /locus_tag="TCM_012330" /note="dbxref CacaoGD:Thecc1EG012330" mRNA join(2288025..2288202,2288478..2289928) /locus_tag="TCM_012330" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G49120.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400009914" /note="quality class is strong, express is strong, homology is paralog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2993t1" CDS 2288504..2289643 /locus_tag="TCM_012330" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21014.1" /db_xref="Phytozome:PGSC0003DMP400009914" /translation="MKNSDKENMEPSLNLPKKLRIVYNDPDVTDSSSDEEEIKLKNKI LGTKRVVKEISHSAVPCEFTKEDDVSESKRARKFSSMSKGVRRRPWGKFASEIRDPFR KKRLWLGTYTTEEEAAAVYQTKKREFEVMMTAEQENNNSFTVKSEDTNYSQLSPSSVL DDVSVNPVMKEHVVKKVVKEYKIFQEHKTVEQSASIKDVSADLWKDEASVMDLWELPS DSWEETFKPVSAKDLWKDEASVANLWEPPSDSWKKTFEPASVKDLWKDEAFVMNLCEP PSETFEPASVKDLWKDENSVKDLWEPPSASESWNELFESGAVENYMNLCSSVLESYMN FWLNDNAANYQQPLVENAKDKFINPPDIALDNKNTAWLDEIVLQA" mobile_element 2290584..2290807 /note="source:CACAO_PIF_E144_scaffold_10 2174 2377" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2291467..2291584) /note="source:scaffold_1_CACTA_0008 7144 7256" /mobile_element_type="transposon:TIR/CACTA" gene complement(2292161..2301816) /locus_tag="TCM_012331" /note="dbxref CacaoGD:Thecc1EG012331" mRNA complement(join(2292161..2293140,2293437..2293521, 2293595..2293680,2294101..2294239,2294795..2294880, 2294993..2295025,2295140..2295232,2295424..2295511, 2296746..2296792,2299130..2299211,2299628..2299680, 2299777..2299842,2300041..2300204,2301466..2301816)) /locus_tag="TCM_012331" /product="DNAse I-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:28207.m000102" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012278t1" /inference="similar to AA sequence:ricco:28207.m000102" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1643t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1643t6" mRNA complement(join(2292167..2293140,2293437..2293680, 2294101..2294239,2294795..2294880,2294993..2295025, 2295140..2295232,2295424..2295511,2296746..2296792, 2299130..2299211,2299628..2299680,2299777..2299842, 2300041..2300204,2301466..2301810)) /locus_tag="TCM_012331" /product="DNAse I-like superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:28207.m000102" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012278t1" /inference="similar to AA sequence:ricco:28207.m000102" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b011903t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1643t6" mRNA complement(join(2292167..2293140,2293437..2293521, 2293595..2293680,2294101..2294239,2294783..2294880, 2294993..2295025,2295140..2295232,2295424..2295511, 2296746..2296792,2299130..2299211,2299628..2299680, 2299777..2299842,2300041..2300204,2301466..2301810)) /locus_tag="TCM_012331" /product="DNAse I-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:28207.m000102" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012278t1" /inference="similar to AA sequence:ricco:28207.m000102" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1643t6" mRNA complement(join(2292667..2293140,2293437..2293680, 2294101..2294239,2294795..2294880,2294993..2295028, 2295140..2295232,2295424..2295511,2296746..2296792, 2299130..2299211,2299628..2299680,2299777..2299842, 2300041..2300204,2301466..>2301703)) /locus_tag="TCM_012331" /product="DNAse I-like superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:28207.m000102" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012278t2" /inference="similar to AA sequence:ricco:28207.m000102" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1592t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1643t6" CDS complement(join(2293072..2293140,2293437..2293521, 2293595..2293680,2294101..2294239,2294795..2294880, 2294993..2295025,2295140..2295232,2295424..2295511, 2296746..2296792,2299130..2299211,2299628..2299680, 2299777..2299842,2300041..2300204,2301466..2301784)) /locus_tag="TCM_012331" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28207.m000102; paralog of Thecc1EG012278t1" /codon_start=1 /product="DNAse I-like superfamily protein, putative isoform 2" /protein_id="EOY21016.1" /db_xref="TAIR:AT1G73875.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTK7" /translation="MRKKGRRQLPEEQSCATVKRKHTHFEQFHYNKQTKRLKWVSTET KTATLKPDPVRNLPVSNNGFEAIRPCTSSSRRHNKRRKRSNCSSLEGSRKWVFSSRNC SNYKDKLVIVSYNILGAENVAKHPDLYLDVPPKFLEWSRRKDLISEEVNRYNASILCF QEVDRFKDLDDLLQKDGFKGVYKARTGNGCDGCALFWKDKIFTLLQEENIEFQDFGLR NNVAQLCVLKINQHQLESDSCRKQSKITPMQSRSLLVGNIHALFNPNRGDIKLGQVRL FLEKAYKLSQEWGSIPVILVGDFNSIPQSAIYQFLASSELNIQLHDRRRISGQLEYPS QGREIRAQNKRHVWMPVSRQLSHRWSDEELVLATGDEGVTHLQHKLKLCSAYAGIPGS SRTRDSHGEPLATSYHSKFMGTVDYIWHTGELVPVRVLETLPIDILRRNASLPNERLG SDHLALVCELAFADDHKGA" CDS complement(join(2293072..2293140,2293437..2293521, 2293595..2293680,2294101..2294239,2294783..2294880, 2294993..2295025,2295140..2295232,2295424..2295511, 2296746..2296792,2299130..2299211,2299628..2299680, 2299777..2299842,2300041..2300204,2301466..2301784)) /locus_tag="TCM_012331" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28207.m000102; paralog of Thecc1EG012278t1" /codon_start=1 /product="DNAse I-like superfamily protein, putative isoform 1" /protein_id="EOY21015.1" /db_xref="TAIR:AT1G73875.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTK7" /translation="MRKKGRRQLPEEQSCATVKRKHTHFEQFHYNKQTKRLKWVSTET KTATLKPDPVRNLPVSNNGFEAIRPCTSSSRRHNKRRKRSNCSSLEGSRKWVFSSRNC SNYKDKLVIVSYNILGAENVAKHPDLYLDVPPKFLEWSRRKDLISEEVNRYNASILCF QEVDRFKDLDDLLQKDGFKGVYKARTGNGCDGCALFWKDKIFTLLQEENIEFQDFGLR NNVAQLCVLKINQHQLESDSCRKQSKITPMQSRSLLVGNIHALFNPNRGDIKLGQVRL FLEKAYKLSQEWGSIPVILVGDFNSIPQSAIYQFLASSELNIQLHDRRRISGQLEYPS QGREIRAQNKYTARRHVWMPVSRQLSHRWSDEELVLATGDEGVTHLQHKLKLCSAYAG IPGSSRTRDSHGEPLATSYHSKFMGTVDYIWHTGELVPVRVLETLPIDILRRNASLPN ERLGSDHLALVCELAFADDHKGA" CDS complement(join(2293555..2293680,2294101..2294239, 2294795..2294880,2294993..2295025,2295140..2295232, 2295424..2295511,2296746..2296792,2299130..2299211, 2299628..2299680,2299777..2299842,2300041..2300204, 2301466..2301784)) /locus_tag="TCM_012331" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28207.m000102; paralog of Thecc1EG012278t1" /codon_start=1 /product="DNAse I-like superfamily protein, putative isoform 3" /protein_id="EOY21017.1" /db_xref="TAIR:AT1G73875.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTK7" /translation="MRKKGRRQLPEEQSCATVKRKHTHFEQFHYNKQTKRLKWVSTET KTATLKPDPVRNLPVSNNGFEAIRPCTSSSRRHNKRRKRSNCSSLEGSRKWVFSSRNC SNYKDKLVIVSYNILGAENVAKHPDLYLDVPPKFLEWSRRKDLISEEVNRYNASILCF QEVDRFKDLDDLLQKDGFKGVYKARTGNGCDGCALFWKDKIFTLLQEENIEFQDFGLR NNVAQLCVLKINQHQLESDSCRKQSKITPMQSRSLLVGNIHALFNPNRGDIKLGQVRL FLEKAYKLSQEWGSIPVILVGDFNSIPQSAIYQFLASSELNIQLHDRRRISGQLEYPS QGREIRAQNKRHVWMPVSRQLSHRWSDEELVLATGDEGVTHLQHKLKLCSAYAGIPGS SRTRDSHGEPLATSYHSKFMGTVDYIWYIDCIVKLSICS" CDS complement(join(2293555..2293680,2294101..2294239, 2294795..2294880,2294993..2295028,2295140..2295232, 2295424..2295511,2296746..2296792,2299130..2299211, 2299628..2299680,2299777..2299842,2300041..2300204, 2301466..>2301703)) /locus_tag="TCM_012331" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:28207.m000102; paralog of Thecc1EG012278t2" /codon_start=1 /product="DNAse I-like superfamily protein, putative isoform 4" /protein_id="EOY21018.1" /db_xref="TAIR:AT1G73875.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTK7" /translation="FHYNKQTKRLKWVSTETKTATLKPDPVRNLPVSNNGFEAIRPCT SSSRRHNKRRKRSNCSSLEGSRKWVFSSRNCSNYKDKLVIVSYNILGAENVAKHPDLY LDVPPKFLEWSRRKDLISEEVNRYNASILCFQEVDRFKDLDDLLQKDGFKGVYKARTG NGCDGCALFWKDKIFTLLQEENIEFQDFGLRNNVAQLCVLKINQHQLESDSCRKQSKI TPMQSRSLLVGNIHALFNPNRGDIKLGQVRLFLEKAYKLSQEWGSIPVILVGDFNSIP QQSAIYQFLASSELNIQLHDRRRISGQLEYPSQGREIRAQNKRHVWMPVSRQLSHRWS DEELVLATGDEGVTHLQHKLKLCSAYAGIPGSSRTRDSHGEPLATSYHSKFMGTVDYI WYIDCIVKLSICS" gene 2302285..2306783 /locus_tag="TCM_012332" /note="dbxref CacaoGD:Thecc1EG012332" mRNA join(2302285..2302616,2303571..2304221,2305436..2305550, 2305647..2305808,2306295..2306326,2306423..2306783) /locus_tag="TCM_012332" /product="LysM domain GPI-anchored protein 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008279001" /inference="similar to AA sequence:ricco:28207.m000103" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1180t1" CDS join(2303576..2304221,2305436..2305550,2305647..2305808, 2306295..2306326,2306423..2306673) /locus_tag="TCM_012332" /note="dbxref ricco:28207.m000103" /codon_start=1 /product="LysM domain GPI-anchored protein 1, putative" /protein_id="EOY21019.1" /db_xref="TAIR:AT1G21880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T592" /translation="MEVTVGVPLPILLLISLIPVTHSKSTIEPCNSSDSCVSLLYYIL PYDSKLSEIAYRFGVNPFDILGANSISPKTLGDEIFKAESVVKVPIPCSCVDGIRRCM PPTYTVRPADTAASISEGFGGFVSAEQIRSRNGINATNPLTSGQSLVIPLPCTCFGNV SNGIPAVYMSYVVKSGESLSSIASEFGTTAMELEAVNGLGQAVVNSGDVLFIPISACS SANLKWYNESLIVAKGSFALTASNCIKCVCGTEDLNLRCWPSGIAPSCSQLQCKDSDL FIGDSVVNNTPFGCKVTTCIYRGHNGGKIYRSLAYSWQAPCPGNQCYNMASPSPAPSP FILTISPSPSSSPPSNPTAGTIAPNSNTTTKQNFNLSSQGTLLLLTHGAFFYTLLPLG LGLELSFFL" gene 2310241..2312382 /locus_tag="TCM_012333" /note="dbxref CacaoGD:Thecc1EG012333" mRNA join(2310241..2311536,2311656..2312382) /locus_tag="TCM_012333" /product="Transcription factor, putative" /inference="alignment:exonerate- protein:2:ricco:28207.m000104" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009901t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06480.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10311t00001" CDS join(2310496..2311536,2311656..2311910) /locus_tag="TCM_012333" /note="paralog of Thecc1EG009901t1" /codon_start=1 /product="Transcription factor, putative" /protein_id="EOY21020.1" /db_xref="Phytozome:POPTR_0015s06480.1" /db_xref="TAIR:AT1G25440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T593" /translation="MTTDKKAANAMGGKTARACDGCLRKRARWYCAADDAFLCQGCDT SVHSANQLASRHERVRLETASFSKFSASVTNRTNQDAPPAWHQGFTRKARTPRQNKSM LGQQKDEGKVFSLNPLDPVVPEIGSEDGSVDENEEQLLCRVPVLNPFAAELCNMVTSD GDEVAMVNEDGNFVIDDYEREGTCELDDGLHGFLPSDMDLADFAADVENLLGVGLDDD ACCDTKGIELLHSKEEDGSNVLHEGKIVKVKDEEEVEGITACCFDSAFDVTRESLNWS YDYESPTIGEEEEEKVLPATETTTMNGESKAEMKRNMLLRLNYESVITAWARQGSPWT AGSRPEFNPDDFMGSNLKEGHHLSGGIGGIYSLQGRGNTDGEREARVSRYREKRRTRL FSKKIRYEVRKLNAEKRPRMKGRFVKRTSFVGTAFTYIN" mobile_element 2312912..2313135 /note="source:CACAO_Again_on_E207_scaffold_9 1 697" /mobile_element_type="transposon:TIR/hAT" mobile_element 2314483..2314853 /note="source:CACAO_Again_on_E207_scaffold_9 698 1862" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2316098..2316227) /note="source:scaffold_9_CACTA_0942 5248 5384" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2316113..2316577) /note="source:CACAO_PIF_E119_scaffold_3 4238 4667" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(2319013..2326285) /locus_tag="TCM_012334" /note="dbxref CacaoGD:Thecc1EG012334" mRNA complement(join(2319013..2319097,2320654..2321177, 2325329..2325383,2325760..2326285)) /locus_tag="TCM_012334" /product="Complex I subunit NDUFS6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040035" /inference="similar to AA sequence:Phytozome:Glyma13g33410.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8181t2" mRNA complement(join(2320822..2321177,2325334..2325383, 2325760..>2326138)) /locus_tag="TCM_012334" /product="Complex I subunit NDUFS6 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040035" /inference="similar to AA sequence:Phytozome:Glyma13g33410.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.63 coverage; inference alignment:PASA:2:TSA:puevd3b011906t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8181t2" CDS complement(join(2325352..2325383,2325760..2326183)) /locus_tag="TCM_012334" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Complex I subunit NDUFS6 isoform 1" /protein_id="EOY21021.1" /db_xref="Phytozome:Glyma13g33410.1" /db_xref="TAIR:AT3G18410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9B4" /translation="MDKIRFRPMDNKTQDPTSKAQNRHTTKTDHSAKKSRVRKREAEW KMGRKKGVPEFDETAPDDFDPANPYKDPVAMLEMREHIVREKWIDIEKAKILRDKVRW CYRIEGVNHLQKCRHLVRQYLDATRGIGWGKEGRHPSLHGPKVEEVESD" CDS complement(join(2325352..2325383,2325760..>2326138)) /locus_tag="TCM_012334" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Complex I subunit NDUFS6 isoform 2" /protein_id="EOY21022.1" /db_xref="Phytozome:Glyma13g33410.1" /db_xref="TAIR:AT3G18410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9B4" /translation="PTSKAQNRHTTKTDHSAKKSRVRKREAEWKMGRKKGVPEFDETA PDDFDPANPYKDPVAMLEMREHIVREKWIDIEKAKILRDKVRWCYRIEGVNHLQKCRH LVRQYLDATRGIGWGKEGRHPSLHGPKVEEVESD" gene complement(2327093..2339750) /locus_tag="TCM_012335" /note="dbxref CacaoGD:Thecc1EG012335" mRNA complement(join(2327093..2327349,2334130..2334255, 2335891..2336018,2339084..2339750)) /locus_tag="TCM_012335" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032528t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" mobile_element 2332951..2333723 /note="source:scaffold_4_CACTA_0503 3236 4012" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2333824..2336094 /note="source:INTACT190_F166_scaffold_7-int 4415 6682" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(2334183..2334255,2335891..2336018, 2339084..2339188)) /locus_tag="TCM_012335" /note="paralog of Thecc1EG032528t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21023.1" /translation="MTRRLEFFLLLHMERKDETVDSDLILDLNLLVTTRFEKSLKDDI APNGIIKSIKPRTSSNRNFKVKLRVSQFKNDSKRSGGILNGHCSGGGFRGLPMKGAQ" gene complement(2340237..2341888) /locus_tag="TCM_012338" /note="dbxref CacaoGD:Thecc1EG012338" mRNA complement(join(2340237..2341093,2341206..2341888)) /locus_tag="TCM_012338" /product="LOB domain-containing protein 41, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05340.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019459t1" /inference="similar to AA sequence:ricco:28207.m000107" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8179t1" CDS complement(join(2340525..2341093,2341206..2341395)) /locus_tag="TCM_012338" /note="dbxref ricco:28207.m000107; paralog of Thecc1EG019459t1" /codon_start=1 /product="LOB domain-containing protein 41, putative" /protein_id="EOY21024.1" /db_xref="TAIR:AT3G02550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N230" /translation="MRMSCNGCRVLRKGCTESCSIRPCLQWIATAQSQANATLFLAKF YGRAGLINLINAGPENLRPGIFKSLLYEACGRIVNPVHGSVGLMWSGSWHLCEAAVDA VLRGSPINKVSSELSDSSPHLKSSCDIRHVSKEKNSDDGLRKIKSRGRFKRSAWKPKA QVEKEVCHESVSHESGLSQRRSPGGDGAEGDTVSVETVEASLAKADELADGSDLELDL TLGFEPSPRKRANSINGCDDATCGVQLDLGQGSC" mobile_element 2345683..2345910 /note="source:CACAO_M_S_E66461_F76_scaffold_5 13953 14174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2346172..2346326 /note="source:CACAO_M_S_E5860_F197_scaffold_2 163 317" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2346323..2346406 /note="source:CACAO_M_S_E66461_F76_scaffold_5 14095 14164" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2349916..2358799 /locus_tag="TCM_012339" /note="dbxref CacaoGD:Thecc1EG012339" mRNA join(2349916..2350167,2350276..2350788,2350892..2351049, 2351150..2351260,2351594..2351813,2352202..2352329, 2352458..2352541,2352703..2352780,2352864..2352956, 2353064..2353093,2353517..2353858,2353950..2354031, 2354110..2354205,2354278..2354457,2354608..2354714, 2354801..2355004,2355162..2355325,2355400..2355653, 2355823..2355986,2357020..2357144,2357259..2357402, 2358121..2358209,2358326..2358799) /locus_tag="TCM_012339" /product="P-loop nucleoside triphosphate hydrolases superfamily protein with CH domain, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019753001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016257t2" /inference="similar to AA sequence:Phytozome:GSVIVT01008287001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1216t2" CDS join(2350761..2350788,2350892..2351049,2351150..2351260, 2351594..2351813,2352202..2352329,2352458..2352541, 2352703..2352780,2352864..2352956,2353064..2353093, 2353517..2353858,2353950..2354031,2354110..2354205, 2354278..2354457,2354608..2354714,2354801..2355004, 2355162..2355325,2355400..2355653,2355823..2355986, 2357020..2357144,2357259..2357402,2358121..2358209, 2358326..2358384) /locus_tag="TCM_012339" /note="paralog of Thecc1EG016257t2" /codon_start=1 /product="P-loop nucleoside triphosphate hydrolases superfamily protein with CH domain, putative" /protein_id="EOY21025.1" /db_xref="Phytozome:GSVIVT01008287001" /db_xref="TAIR:AT1G63640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE31" /translation="MANSNSETESKQRAVLVEWLNSILPNLSLPIKASDEELRANLVD GAVLCKILNRVRPGSVNEEGYPENSSVLRSENVTRFLTAVDELGIPRFEVSDLEKGSM KAVVDCLLRLKAQFMPSGCNLSTTSTITKPGNIHGDASSRGPLTPLSGEKRLKASSES KLQRALHTPLMSEPSAAGLHHVGHKFHEVFQLKQGLYADLPATKISEMMKSNSLDNAP TQSLLSVVNGILDESVERKIGEIPHRVACLLRKVVQEIERRISTQAEHLRTQNNLFKA REEKYQSRIRVLEALASGAGEETKYVTNQLQQIKTENSKVQEKRKVEEQEIKQLMKEN DKHNLEISALKQELEIAKKMHEQHCFEVEAGVKGAKAGLQMRIKELECLLADSNNRVK ELEVISESKCQRWNMKENIYQSFMDFQFGAMKELRVTSHSIKQEILKTQKSYSEEFNY LEVKLKALADAAENYHAVLAENRKLFNELQDLKGNIRVYCRIRPFLPGQTGKQTIIEN IGENGQLVIANPSKPGKDGQRSFKFNKVFGPAATQGEVFQDIQPFVQSVVDGYNVCIF AYGQTGSGKTYTMTGPNGATEEEWGVNYRALNCLFKISQNRRSTILYEVGVQMVEIYN EQVRDLLSSGGSQKKYPFLNEIDLGITTISQPNGLAVPDATMLPVISTSDVLDLMNIG LKNRAVGATALNERSSRSHSIVTIHVRGKDLKVGTTLYGNLHLVDLAGSERVDRSEVT GDRLKEAQHINKSLSSLGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQL NPDATSFSESMSTLKFAERVSGVELGAARSSKEGKDVRELMEQMACLKDTIAKKDEEI ERLQLLKDLKNGYPSMNGEQHGTSSLSDKHFEADYQQSTDDEKFTEISDGSLSMGTET DDSAEYSLSPEGMNLGKTKVATRTRLQQKLAQGLTALRTDSSRVSTSIKKSVSSTSLK PSPRRWQ" mobile_element complement(2359722..2362496) /note="source:CACAO_M_E69760_F9_scaffold_9 6903 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2362497..2364721 /note="source:CACAO_M_E2851_F53_scaffold_1 1 2514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2364722..2364955) /note="source:INTACT551_F248_scaffold_7-int 11575 11798" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2364930..2365094) /note="source:scaffold_4_CACTA_0503 3236 3400" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2364956..2365094 /note="source:CACAO_M_E2851_F53_scaffold_1 2515 2673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2365095..2365130) /note="source:CACAO_M_E49857_F85_scaffold_7 4015 4221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2366196..2366829) /note="source:CACAO_M_E84925_F82_scaffold_10 2690 3308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2366930..2368379) /note="source:CACAO_M_E69484_F323_scaffold_9 993 2442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2368480..2368791) /note="source:CACAO_M_E59669_F323_scaffold_9 1045 1356" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2368892..2369944 /note="source:CACAO_M_E69751_F323_scaffold_9 1988 3039" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2370793..2371046 /note="source:INTACT444_F216_scaffold_4-int 12 249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2372457..2374009) /note="source:CACAO_M_E34142_F67_scaffold_4 3699 5271" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2374240..2374516) /note="source:CACAO_on_E565_scaffold_5 13481 13761" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 2374924..2376698 /locus_tag="TCM_012342" /note="dbxref CacaoGD:Thecc1EG012342" mRNA join(2374924..2375248,2375657..2375791,2376130..2376698) /locus_tag="TCM_012342" /product="Ribulose bisphosphate carboxylase (small chain) family protein" /inference="alignment:exonerate- protein:2:ricco:29974.m000232" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019454t2" /inference="similar to AA sequence:ricco:29974.m000232" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc11478t1" CDS join(2375081..2375248,2375657..2375791,2376130..2376360) /locus_tag="TCM_012342" /note="dbxref ricco:29974.m000232; paralog of Thecc1EG019454t2" /codon_start=1 /product="Ribulose bisphosphate carboxylase (small chain) family protein" /protein_id="EOY21026.1" /db_xref="TAIR:AT5G38410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P10797" /translation="MASSMVSTASVGSINRATQAQASMVAPFTRLRSTSTFPVTSKTN ADITSLASTKGRALPPLGKKKFETLSYLPDLSREQLLKEVEYLLRSKWIPCLEFELEH GFVYRENHRSTGYYDGRYWTMWELPMFGCTDASQVLKELDEAIKAYSKAFIRIIGFDN KRQVQCISFITYKPPVF" mobile_element complement(2376873..2379798) /note="source:CACAO_Mutator_E1149_scaffold_5 355 3294" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2380103..2381501) /note="source:scaffold_2_CACTA_0279 7038 8454" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2381493..2384747 /note="source:scaffold_5_CACTA_0606 6711 9955" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2384625..2384761) /note="source:scaffold_3_CACTA_0392 1357 1498" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2384727..2384785 /note="source:scaffold_1_CACTA_0006 8437 8496" /mobile_element_type="transposon:TIR/CACTA" gene complement(2390507..2392278) /locus_tag="TCM_012344" /note="dbxref CacaoGD:Thecc1EG012344" mRNA complement(join(2390507..2391356,2391666..2391735, 2391833..2392062,2392167..2392278)) /locus_tag="TCM_012344" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009867t1" /inference="similar to AA sequence:ricco:29974.m000233" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00379t00003" CDS complement(join(2391066..2391356,2391666..2391735, 2391833..2391963)) /locus_tag="TCM_012344" /note="dbxref ricco:29974.m000233; paralog of Thecc1EG009867t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21027.1" /db_xref="TAIR:AT1G68490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6SYT4" /translation="MNANGMGRFEERGYNSVVCPKPRRLGLFNSSAHDHIRTFRWPTN SCYQTEMVDSKDGTELLDIILTKGGYGAEKPSNQVASSPPFFCGSPPSRASNPVVQDA QFNKEKQLPPLSSPAPLSPSSRIAGGGCVRMKFGHKPAAVRIEGFDSLSRDRRNCSIS AVA" mobile_element 2406000..2406378 /note="source:scaffold_6_CACTA_0713 625 1005" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2406997..2412075 /note="source:INTACT618_F274_scaffold_3-int 1 5079" /mobile_element_type="retrotransposon:LTR/Copia" gene 2410427..2413771 /locus_tag="TCM_012347" /note="dbxref CacaoGD:Thecc1EG012347" mRNA join(2410427..2410432,2411904..2412775,2412892..2413771) /locus_tag="TCM_012347" /product="Coatomer gamma-2 subunit / gamma-2 coat protein / gamma-2 COP, putative" /inference="alignment:exonerate-protein:2:frave:gene20429" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006902t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s16090.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc934t2_G2" CDS join(2412503..2412775,2412892..2413746) /locus_tag="TCM_012347" /note="paralog of Thecc1EG006902t1" /codon_start=1 /product="Coatomer gamma-2 subunit / gamma-2 coat protein / gamma-2 COP, putative" /protein_id="EOY21028.1" /db_xref="Phytozome:POPTR_0004s16090.1" /db_xref="TAIR:AT4G34450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WW26" /translation="MAQPLVKKDDDRDDEADYSPFLGIEKGSVLQEARVFNDPQLDPR RCSQVITKLLYLLNQGETFTKVEATEVFFAGTKLFQSRDIGLSRMVYPKCRYFRELGG RLHLILTNGSHSTRQFDVYEMETGLSAPPTGPPSTVDAYERLLSSIPEFANFGKLFKS SAPVELTGAETEYAVNVVKHIFDGHVVFQYNCTNTIPEQLLENATVIVDASEAEEFAE VATKPLRSLPYDSPGQTFVAFEKPEGVPAVGKFSNMLRFIAKEVDPSTGEAEEDGVEE EYQLEDLEVVAADYMLKVGVSNFRNAWESMGADCERVDEYGLGPRDSLAEAVNAVINL LGMQPCEGMEVVPSNSRSTHLSTMWCIHWQCEGAREVAIWH" gene complement(2415787..2418976) /locus_tag="TCM_012349" /note="dbxref CacaoGD:Thecc1EG012349" mRNA complement(join(2415787..2416826,2416927..2417141, 2417278..2417646,2417765..2418109,2418229..2418710, 2418808..2418976)) /locus_tag="TCM_012349" /product="Checkpoint serine/threonine-protein kinase BUB1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29974.m000234" /inference="similar to AA sequence:Phytozome:POPTR_0012s05310.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1261t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1261t2" mRNA complement(join(2415787..2416826,2416923..2417141, 2417278..2417646,2417765..2418109,2418229..2418710, 2418808..2418976)) /locus_tag="TCM_012349" /product="Checkpoint serine/threonine-protein kinase BUB1, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29974.m000234" /inference="similar to AA sequence:Phytozome:POPTR_0012s05310.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1261t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1261t2" CDS complement(join(2416581..2416826,2416927..2417141, 2417278..2417646,2417765..2418109,2418229..2418710, 2418808..2418950)) /locus_tag="TCM_012349" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Checkpoint serine/threonine-protein kinase BUB1, putative isoform 1" /protein_id="EOY21029.1" /db_xref="Phytozome:POPTR_0012s05310.1" /db_xref="TAIR:AT1G73850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T1N2" /translation="MPCSEQALVRLFYNLSSSSLLLLLFLYFSSILLARLFYFIGSYP LIQRNQNGYDYSMFSEEEEAQEEEEEEYADRFYRVNCMEKDHLVADIIHGGESLLFLP DNSFQTIQNDGAEESNNPPDHQLTSEDQENASYTTEQFSAHDSSPCSDSEHDDADTEL LDGEIPTKDADSLCNSDVNDQDGPTPIVSPILTEQDKSDQVDNDEDGVEICSNKKIRH GVVTDFSRNDKFFVIEPTKLESKKLLVHEKDDEEIYGDSCTIGSTSKSSSEWRSSINC RDSGTDDPFSSSSRRSCPKWESYTVFQKYDEEMMFLDRISAQKLQETESLRSIQACPR SISERLVHKFATMNKKPSDIRHNPYHELEAAYVAQICLTWEALNWNYKNFERKRAARK DFDCPASIAQQFQQFQVLLQRYIENEPYEQGRRPEVYARMRLLAPKLLLVPEYRDYED DQRDEGFGSRISADSFLVIMEDGIQTFMNFLKADKEKPYQIIKAFFGRKRRGSVDPTL LQLMKKVNAKKKMKLKDLRRAHKCIRKRKLKVEKEMEILMGLIDLKVVSRVLRMSDLS EEQLHWCEEKMSKVRILEGELQRDSSPLFFPAH" CDS complement(join(2416726..2416826,2416923..2417141, 2417278..2417646,2417765..2418109,2418229..2418710, 2418808..2418950)) /locus_tag="TCM_012349" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Checkpoint serine/threonine-protein kinase BUB1, putative isoform 2" /protein_id="EOY21030.1" /db_xref="Phytozome:POPTR_0012s05310.1" /db_xref="TAIR:AT1G73850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T1N2" /translation="MPCSEQALVRLFYNLSSSSLLLLLFLYFSSILLARLFYFIGSYP LIQRNQNGYDYSMFSEEEEAQEEEEEEYADRFYRVNCMEKDHLVADIIHGGESLLFLP DNSFQTIQNDGAEESNNPPDHQLTSEDQENASYTTEQFSAHDSSPCSDSEHDDADTEL LDGEIPTKDADSLCNSDVNDQDGPTPIVSPILTEQDKSDQVDNDEDGVEICSNKKIRH GVVTDFSRNDKFFVIEPTKLESKKLLVHEKDDEEIYGDSCTIGSTSKSSSEWRSSINC RDSGTDDPFSSSSRRSCPKWESYTVFQKYDEEMMFLDRISAQKLQETESLRSIQACPR SISERLVHKFATMNKKPSDIRHNPYHELEAAYVAQICLTWEALNWNYKNFERKRAARK DFDCPASIAQQFQQFQVLLQRYIENEPYEQGRRPEVYARMRLLAPKLLLVPEYRDYED DQRDEGFGSRISADSFLVIMEDGIQTFMNFLKADKEKPYQIIKAFFGRKRRGSVDPTL LQLMKKVNAKVKKDEAQRPPPGSQMHKEKKTEGGERDGDIDGSN" mobile_element complement(2420910..2421240) /note="source:CACAO_on_E33_A_scaffold_3 7610 7985" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 2426909..2429186 /locus_tag="TCM_012350" /note="dbxref CacaoGD:Thecc1EG012350" mRNA join(2426909..2427181,2427924..2428189,2428305..2429186) /locus_tag="TCM_012350" /product="NAC domain protein, IPR003441" /inference="alignment:exonerate- protein:2:ricco:29974.m000235" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036791t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s03700.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4804t1" CDS join(2427028..2427181,2427924..2428189,2428305..2428877) /locus_tag="TCM_012350" /note="paralog of Thecc1EG036791t1" /codon_start=1 /product="NAC domain protein, IPR003441" /protein_id="EOY21031.1" /db_xref="Phytozome:POPTR_0015s03700.1" /db_xref="TAIR:AT3G18400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2L8" /translation="MEENLPPGFRFHPTDEELITYYLSHKVSDVSFTSKAIVDVDLNK CEPWDLPAKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGILV GMKKTLVFYKGRAPKGEKSNWVMHEYRLENKHPFRTTKEEWVVCRVFQKSAAVKKPQP TSSSQPSMGSPCDANSIVNEFGDVELPNLNINANPSSTGFSNIATPGYNNSTVNHGHL NMNLNVDFAAASVPSSLTWPSSILSPNLSMNSLLLKALQLRNYQPRDVTTMDYSLLSS ASQGIPQFGTGLSPNFQAATASSSKVLDPTPQQQQQQQQQQQQQEQPFNMDSMW" mobile_element 2430070..2430118 /note="source:CACAO_M_S_E122138_F207_scaffold_10 7184 7232" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2430735..2434820 /locus_tag="TCM_012351" /note="dbxref CacaoGD:Thecc1EG012351" mRNA join(2430735..2430881,2431028..2431105,2431710..2431748, 2431836..2432408,2432501..2432599,2433745..2433927, 2434026..2434820) /locus_tag="TCM_012351" /product="Hydroxyproline-rich glycoprotein family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29974.m000236" /inference="similar to AA sequence:Phytozome:POPTR_0012s05270.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06572t00001" CDS join(2430789..2430881,2431028..2431105,2431710..2431748, 2431836..2432408,2432501..2432599,2433745..2433927, 2434026..2434151) /locus_tag="TCM_012351" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein, putative isoform 1" /protein_id="EOY21032.1" /db_xref="Phytozome:POPTR_0012s05270.1" /db_xref="TAIR:AT1G73840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYM7" /translation="MAGKQLAGEGLPANIAGMSKNQLYDIMSQMKALIEQNHQQARQI LIQNPYLTKALFQAQIMLGMVKPPQVIPTIQPPAPQHSQQSAQPPPQPNLQPAQSLPV QVGLQDLAAASQTQPPIRKQYQNQTVTQIPSAAVPAANLQSQSMPPHSLQTPQQTKGH LNPPMSLPQSSQLPNVPSVPLHSSSQPPHHHQTHLPTASSQLQQPIQTTGIPHMPLQP PMPPQARPTSVPTFHHQYAPQMGPNVGFQHPGAPQHPSQPMFHSGNKPPSGLGPSFPQ GQLPLPNQPPPQSIYQNQAGGLHLGSEFGNQVGGSMQADRGSSWMSSQPDNLTLAQLQ GQSPLVPSQMGQGNQPPRPASLTPEMEKALLQQVMSLTPEQISLLPPEQRNQVLQLQQ ILRH" mRNA join(2430918..2431105,2431710..2431748,2431836..2432408, 2432505..2432599,2433745..2433927,2434016..2434054) /locus_tag="TCM_012351" /product="Hydroxyproline-rich glycoprotein family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29974.m000236" /inference="similar to AA sequence:Phytozome:POPTR_0012s05270.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc642t3; inference alignment:Newbler:10:TSA:cgbaB_g06572t00001" CDS join(2431022..2431105,2431710..2431748,2431836..2432408, 2432505..2432599,2433745..2433763) /locus_tag="TCM_012351" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein, putative isoform 2" /protein_id="EOY21033.1" /db_xref="Phytozome:POPTR_0012s05270.1" /db_xref="TAIR:AT1G73840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYM7" /translation="MKALIEQNHQQARQILIQNPYLTKALFQAQIMLGMVKPPQVIPT IQPPAPQHSQQSAQPPPQPNLQPAQSLPVQVGLQDLAAASQTQPPIRKQYQNQTVTQI PSAAVPAANLQSQSMPPHSLQTPQQTKGHLNPPMSLPQSSQLPNVPSVPLHSSSQPPH HHQTHLPTASSQLQQPIQTTGIPHMPLQPPMPPQARPTSVPTFHHQYAPQMGPNVGFQ HPGAPQHPSQPMFHVINLLLALDLLFHKDSYPFQISRHLNRYIKIRQVACI" gene complement(2434836..2442160) /locus_tag="TCM_012352" /note="dbxref CacaoGD:Thecc1EG012352" mRNA complement(join(2434836..2435216,2435395..2435641, 2435824..2435907,2436855..2436914,2437003..2437295, 2437374..2437530,2437953..2438297,2439542..2439672, 2439761..2440226,2440890..2442160)) /locus_tag="TCM_012352" /product="CRS1 / YhbY domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008296001" /inference="similar to AA sequence:Phytozome:GSVIVT01008296001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1444t2" CDS complement(join(2435456..2435641,2435824..2435907, 2436855..2436914,2437003..2437295,2437374..2437530, 2437953..2438297,2439542..2439672,2439761..2440226, 2440890..2441927)) /locus_tag="TCM_012352" /codon_start=1 /product="CRS1 / YhbY domain-containing protein" /protein_id="EOY21034.1" /db_xref="Phytozome:GSVIVT01008296001" /db_xref="TAIR:AT3G18390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LS51" /translation="MGQNQPIPIPQNIQNIQKKKKGKSYLSLQLKTACFQVFQCFHTL QPKQWRRFLNDETNLKIQIKRMAFATTKFTEMPLRTSLPFASYSYSYSSSSLNLFFSA PKPSFRFFRPFSSLRTGNSPSSKFNRYSYPWDQEASVPPNSSASSSSLQAWSSPSQKV IQSDGDDKTDVETRYFDRDKSQSAIERIVLRLRNLGLGSDDEDEGEDETDQYNSTPVT GEERLGDLLKREWVRPDTMLIEREKEEAVLPWERDEAEVEVVKEGVLGVKKRRVRAPT LAELTIEDEELRRLRRMGMYLRERINVPKAGITQAVLEKIHDKWRKEELVRLKFHEVL ATDMKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPSRSQSIDREGEALFIPDVSS ASNAVRGSETGKTSTPEKCEPVVVKPERSESMTEEEAEYNSLLDGVGPRFVEWWGTGV LPVDADLLPQKIPGYKTPFRLLPAGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQ GLAAAIIKLWEKSLVVKIAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGK DFLPTSVAAALAERQELTKQIQDVEEKVRIRAVEPAQSGEDKGEAPAGTLAEFYEAQA CWGREISAEEREKMIEEASKAKHARLVKRVEHKLAVAQAKKLRAERLLAKIESSMIPA APDYDQETITDEERVMFRRVGLRMKPYLPLGIRGVFDGVIENMHLHWKHRELVKLISK QKTLAFVEDTARLLEFESGGILVAIERVPKGYALIYYRGKNYHRPISLRPRNLLTKAK ALKRSVAMQRHEALSQHISELERTIEEMKKEIGASQDVEDEDSQVSGEHGQFDPVSEL TQSEDEASYMASDGDDEYDDEFDDDEEDSEFDDDEDEDINIDLEADEDSLQSNSEKIN SRRRF" mobile_element 2435544..2435613 /note="source:CACAO_M_E33758_F144_scaffold_4 1221 1285" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2442773..2444750) /locus_tag="TCM_012353" /note="dbxref CacaoGD:Thecc1EG012353" mRNA complement(join(2442773..2442953,2443119..2443193, 2443315..2443377,2443718..2443804,2443904..2443966, 2444237..2444750)) /locus_tag="TCM_012353" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012356t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1244t1" CDS complement(join(2442921..2442953,2443119..2443193, 2443315..2443377,2443718..2443804,2443904..2443966, 2444237..2444560)) /locus_tag="TCM_012353" /note="paralog of Thecc1EG012356t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21035.1" /translation="MMNNPDLFDNATDTEKEVANILLELSNLSIEPAFPRWGIRARRS AIKESLSHRSVASQLGFHTENSKHGTDDQHVPYVEENSSEIKVKTPSLELPDREPNTS FNPQHKANEGVEEGLGKLAVPKGHFVRGSGKIKAEPSTVQEANNIFVPSKKRAKRKSK EEMEKEVAFWEQQKRDLLESIKKVKDYLEKRKALNLQLKALKLQMEEKVSTRKP" mobile_element 2446450..2446533 /note="source:scaffold_5_CACTA_0599 2419 2502" /mobile_element_type="transposon:TIR/CACTA" gene 2447355..2448950 /locus_tag="TCM_012354" /note="dbxref CacaoGD:Thecc1EG012354" mRNA join(2447355..2447916,2448059..2448950) /locus_tag="TCM_012354" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene25961" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(2447743..2447916,2448059..2448709) /locus_tag="TCM_012354" /note="dbxref frave:gene25961" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21036.1" /translation="MRRLIQAKDRPWLALPYHPKRSDKRCSSMSFQSVSSNKIYHRKL PGVGGSKTICGSSQAVLSSPPDCNPYDYVLMVIYGEKRELAYYEAKSRTWTKLQEAGR YYDDVIFHKGEFYAVDEYGKLVVCQPCSLPIVSEIAMPWLLRGSKVYLVGMEDSLCVV IRFLKDNPSVGYETYKFEVRLLEPNEQWTHLGSIEDWAFFLGQNESAALPVEDFKGLK DDRIYFTDDNSDACKYGVIGGHDSGVFDMGEESFQPLEYCQCPRPVWLTPENRPSA" mobile_element 2450187..2450236 /note="source:CACAO_PIF_E465_scaffold_115 317 366" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(2450779..2457351) /locus_tag="TCM_012355" /note="dbxref CacaoGD:Thecc1EG012355" mRNA complement(join(2450779..2450963,2451077..2451205, 2452402..2452468,2452591..2453142,2457299..2457351)) /locus_tag="TCM_012355" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012356t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage" CDS complement(join(2450926..2450963,2451077..2451205, 2452402..2452468,2452591..2452914)) /locus_tag="TCM_012355" /note="paralog of Thecc1EG012356t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21037.1" /translation="MADHSVASQLETPLCDGENENENSKHGTDDQHISYIKENSSEIK VEPLNLEPTTFFNPQHKVIKIKFNPFSEIRHTHKSIQIENKHPQLEADIRPKSVMIIK KTYNKRAKEEFERGLDKVAVSKGHFVRVAEGRQTTGISSEKSSQSAALGPQTTGISSE KSSQSAAQGPQTTGGKKRFGLENPK" mobile_element 2451506..2451590 /note="source:CACAO_Again_on_S_E162_scaffold_5 2 76" /mobile_element_type="transposon:TIR/hAT" gene complement(2457406..2459141) /locus_tag="TCM_012356" /note="dbxref CacaoGD:Thecc1EG012356" mRNA complement(join(2457406..2457538,2457657..2457728, 2457976..2458062,2458179..2458241,2458369..2459141)) /locus_tag="TCM_012356" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012298t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1265t2" CDS complement(join(2457449..2457538,2457657..2457728, 2457976..2458062,2458179..2458241,2458369..2458842)) /locus_tag="TCM_012356" /note="paralog of Thecc1EG012298t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21038.1" /translation="MMNSSDLFDNATNTEKEVANILLELPRLFIEPIVPKRRFRVRRS VLKESPSLPIEDHSVASQLETPTCNGENENESSNRDTDDQRIPYIEENSSEIKVQSAS LEPTTSQHKVIKIKFNPPSEIHYSQKQIQIEDKPPKLKADIHPKRLMIINKTCNERAK DEIEEGLGKSVVPKGHLLRGSGKIKAETSTVPEASKVFVPSKKRDKRKSIEELKKELA LLEQRKRGLLKVLESKENVKEHLEKRKALKLQQKALKLPEAKP" gene 2459425..2461165 /locus_tag="TCM_012357" /note="dbxref CacaoGD:Thecc1EG012357" mRNA join(2459425..2460062,2460299..2461165) /locus_tag="TCM_012357" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.29 coverage" CDS join(2459637..2460062,2460299..2460313) /locus_tag="TCM_012357" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21039.1" /translation="MDSTFRTLFWCCAFAFDFKVLDECFLCSEGVFAADFVAIIVAGC SWSLTFMFGCVFQALLVLSIPPVLSLFKSNFSIVMRKCLSYVGLFKAYIIAVAWVVPS FHAPVLGVCTLFFYSWLWCRQFLILVFELGGHLFVVAIRVVHKS" mobile_element complement(2460533..2460595) /note="source:INTACT591_F264_scaffold_1-int 2679 2744" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2460875..2471760) /locus_tag="TCM_012358" /note="dbxref CacaoGD:Thecc1EG012358" mRNA complement(join(2460875..2461138,2461319..2461900, 2461988..2462263,2462785..2463087,2463612..2463746, 2464200..2464472,2464564..2464782,2465420..2465554, 2465999..2466415,2466803..2466946,2467578..2467703, 2468383..2468472,2468592..2468624,2470034..2470141, 2470231..2470305,2471193..2471760)) /locus_tag="TCM_012358" /product="Plant synaptotagmin isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05250.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008297001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1259t5" mRNA complement(join(2461394..2461900,2462785..2463087, 2463612..2463746,2464200..2464472,2464564..2464782, 2465420..2465554,2465999..2466415,2466803..2466946, 2467578..2467703,2468383..2468472,2468592..2468624, 2470034..2470141,2470231..2470305,2471193..2471757)) /locus_tag="TCM_012358" /product="Plant synaptotagmin isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05250.1" /inference="similar to AA sequence:ricco:29974.m000238" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1279t5; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1259t5" CDS complement(join(2461850..2461900,2462785..2463087, 2463612..2463746,2464200..2464472,2464564..2464782, 2465420..2465554,2465999..2466415,2466803..2466946, 2467578..2467703,2468383..2468472,2468592..2468624, 2470034..2470141,2470231..2470305,2471193..2471384)) /locus_tag="TCM_012358" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29974.m000238" /codon_start=1 /product="Plant synaptotagmin isoform 3" /protein_id="EOY21042.1" /db_xref="TAIR:AT3G18370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE39" /translation="MGGRRKRALMNVDEVVDFFNNIIVEKPYLFLLIPFILIFWAIEK WFFSLSNWVPLVLAVWATIQYGNYQHRMVVEDLNKKWKRVILNTSPITPLEHCEWLNK LLMEIWLNFMNPKLSLRFQSIVEKRLKHRKSRLIEKVELLEFSLGSSPPCLGLHGTRW STSGDQRVMRLGFDWDTTDISIMLLAKVAKPFFGTAKIVINSLHIKGDLLLMPILAGK AILYSFISTPEVRITVAFGSGGSQSLPATELPGVSSWLVKLLTDTLSKTMVEPRRQCF SLPTVDLRKKAVGGIIYVTVISASKLSRSSLRGSPTRRQPSFAVDGLEDHFDDKDLQT FVEVELGELTRRTYVRPGSSPQWDSTFNMVLHDNTGTVRFHLYERTPGSVKYDYLASC EIKMKYVSDDSTIFWAVGPDSGVIARHSEVCGKEVEMVLPFEGVNAGKLAVRLVVKEW QFSDGSHSFNNFRVRSQPTLNGSSNFLSRTGRKINVTVVEGKDLVTKDKFGKCNPYVK LQYGKVLQKTRTAHSFNPIWNQKFEFDEIGGGEYLKIKCYTEEVFGDDSIGSARINLE GLVEGSVRDVWVPLEKVNSGELRIQLEAVSIDDYEGSRGSAYPGNGWIELVLVEARDL IAADLRGTSDPYVRVHYGNLKRRTKVMYRTLNPQWHQTLEFPDDGSPLELHVKDHNAL LPTSNIGDCVVEYQRLPPNEMSDKWIPLQGVKRGEIHVQVTRKVPELLKRPSLDPEPS LTKAHQISSQQILNRHHLLIVPFPLF" CDS complement(join(2462048..2462263,2462785..2463087, 2463612..2463746,2464200..2464472,2464564..2464782, 2465420..2465554,2465999..2466415,2466803..2466946, 2467578..2467703,2468383..2468472,2468592..2468624, 2470034..2470141,2470231..2470305,2471193..2471384)) /locus_tag="TCM_012358" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Plant synaptotagmin isoform 1" /protein_id="EOY21040.1" /db_xref="Phytozome:GSVIVT01008297001" /db_xref="TAIR:AT3G18370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE39" /translation="MGGRRKRALMNVDEVVDFFNNIIVEKPYLFLLIPFILIFWAIEK WFFSLSNWVPLVLAVWATIQYGNYQHRMVVEDLNKKWKRVILNTSPITPLEHCEWLNK LLMEIWLNFMNPKLSLRFQSIVEKRLKHRKSRLIEKVELLEFSLGSSPPCLGLHGTRW STSGDQRVMRLGFDWDTTDISIMLLAKVAKPFFGTAKIVINSLHIKGDLLLMPILAGK AILYSFISTPEVRITVAFGSGGSQSLPATELPGVSSWLVKLLTDTLSKTMVEPRRQCF SLPTVDLRKKAVGGIIYVTVISASKLSRSSLRGSPTRRQPSFAVDGLEDHFDDKDLQT FVEVELGELTRRTYVRPGSSPQWDSTFNMVLHDNTGTVRFHLYERTPGSVKYDYLASC EIKMKYVSDDSTIFWAVGPDSGVIARHSEVCGKEVEMVLPFEGVNAGKLAVRLVVKEW QFSDGSHSFNNFRVRSQPTLNGSSNFLSRTGRKINVTVVEGKDLVTKDKFGKCNPYVK LQYGKVLQKTRTAHSFNPIWNQKFEFDEIGGGEYLKIKCYTEEVFGDDSIGSARINLE GLVEGSVRDVWVPLEKVNSGELRIQLEAVSIDDYEGSRGSAYPGNGWIELVLVEARDL IAADLRGTSDPYVRVHYGNLKRRTKVMYRTLNPQWHQTLEFPDDGSPLELHVKDHNAL LPTSNIGDCVVEYQRLPPNEMSDKWIPLQGVKRGEIHVQVTRKVPELLKRPSLDPEPS LTKAHQISSQMKQMMIKLQSSIEDSNLEGVSNPLSELEALQDLQEEYMVQLETEQMLL LNKIKELGQEILNSSPSRRSSGS" mRNA complement(join(<2462236..2462263,2462415..2462540, 2462785..2463087,2463612..2463746,2464200..2464472, 2464564..2464782,2465420..2465554,2465999..2466415, 2466803..2466946,2467578..2467703,2468383..2468472, 2468592..2468624,2470034..2470141,2470231..2470305, 2471193..2471757)) /locus_tag="TCM_012358" /product="Plant synaptotagmin isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05250.1" /inference="similar to AA sequence:ricco:29974.m000238" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1419t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1259t5" CDS complement(join(<2462237..2462263,2462415..2462540, 2462785..2463087,2463612..2463746,2464200..2464472, 2464564..2464782,2465420..2465554,2465999..2466415, 2466803..2466946,2467578..2467703,2468383..2468472, 2468592..2468624,2470034..2470141,2470231..2470305, 2471193..2471384)) /locus_tag="TCM_012358" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29974.m000238" /codon_start=1 /product="Plant synaptotagmin isoform 2" /protein_id="EOY21041.1" /db_xref="TAIR:AT3G18370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE39" /translation="MGGRRKRALMNVDEVVDFFNNIIVEKPYLFLLIPFILIFWAIEK WFFSLSNWVPLVLAVWATIQYGNYQHRMVVEDLNKKWKRVILNTSPITPLEHCEWLNK LLMEIWLNFMNPKLSLRFQSIVEKRLKHRKSRLIEKVELLEFSLGSSPPCLGLHGTRW STSGDQRVMRLGFDWDTTDISIMLLAKVAKPFFGTAKIVINSLHIKGDLLLMPILAGK AILYSFISTPEVRITVAFGSGGSQSLPATELPGVSSWLVKLLTDTLSKTMVEPRRQCF SLPTVDLRKKAVGGIIYVTVISASKLSRSSLRGSPTRRQPSFAVDGLEDHFDDKDLQT FVEVELGELTRRTYVRPGSSPQWDSTFNMVLHDNTGTVRFHLYERTPGSVKYDYLASC EIKMKYVSDDSTIFWAVGPDSGVIARHSEVCGKEVEMVLPFEGVNAGKLAVRLVVKEW QFSDGSHSFNNFRVRSQPTLNGSSNFLSRTGRKINVTVVEGKDLVTKDKFGKCNPYVK LQYGKVLQKTRTAHSFNPIWNQKFEFDEIGGGEYLKIKCYTEEVFGDDSIGSARINLE GLVEGSVRDVWVPLEKVNSGELRIQLEAVSIDDYEGSRGSAYPGNGWIELVLVEARDL IAADLRGTSDPYVRVHYGNLKRRTKVMYRTLNPQWHQTLEFPDDGSPLELHVKDHNAL LPTSNIGDCVVEYQRLPPNEMSDKWIPLQGVKRGEIHVQVTRKVPELLKRPSLDPEPS LTKAHQISSQVLLSCLDLEILPLQTNFRMGKLDFYCSIHLVNFFLYDLLIYKMKQMMI KLQ" mobile_element 2472115..2473188 /note="source:INTACT639F_F363_scaffold_5-int 7494 8573" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2473348..2473696 /note="source:scaffold_1_CACTA_0016 1405 1769" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2474200..2474271 /note="source:CACAO_on_S_E46_scaffold_2 1309 1379" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2476911..2482533) /note="source:INTACT1604F_F75_scaffold_10-int 1 5568" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2485489..2485607) /note="source:scaffold_7_CACTA_0795 2946 3060" /mobile_element_type="transposon:TIR/CACTA" gene 2485917..2486851 /locus_tag="TCM_012360" /note="dbxref CacaoGD:Thecc1EG012360" mRNA 2485917..2486851 /locus_tag="TCM_012360" /product="VQ motif-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:29974.m000240" /inference="similar to AA sequence:ricco:29974.m000240" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6982t1" CDS 2485992..2486705 /locus_tag="TCM_012360" /note="dbxref ricco:29974.m000240" /codon_start=1 /product="VQ motif-containing protein, putative" /protein_id="EOY21043.1" /db_xref="TAIR:AT3G18360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T1N8" /translation="MSPTQFHDHHYHHHAKKDTTSNGNAAALCPPPLKINKDSHLIRK SSSSSSSSSAASSLGVTCTAKPPHQQQRHPVIIYTHSPKVIHTHPKDFMALVQKLTGL SRSEDDNHHNHHHHHHHHHHNNNHHDAPHQPKVDNGAASAEEDSKRIINDDNDSSSVI TDENGEGQVNSCFVPPLFDPPPAPFLTNIPVFTPNSADFLCVNQPLYNYTDSLFFTPN MRSSISSSGLAGMNEFRDF" gene complement(2487279..2495822) /locus_tag="TCM_012361" /note="dbxref CacaoGD:Thecc1EG012361" mRNA complement(join(2487279..2487835,2487992..2488235, 2489869..2489981,2490361..2490940,2491112..2491289, 2491480..2491622,2493580..2493749,2494041..2494275, 2494497..2494715,2495139..2495209,2495302..2495822)) /locus_tag="TCM_012361" /product="Gb:AAD20392.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007649t5" /inference="similar to AA sequence:Phytozome:POPTR_0012s05220.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06437t00001" CDS complement(join(2487608..2487835,2487992..2488235, 2489869..2489981,2490361..2490940,2491112..2491289, 2491480..2491622,2493580..2493749,2494041..2494275, 2494497..2494687)) /locus_tag="TCM_012361" /note="paralog of Thecc1EG007649t5" /codon_start=1 /product="Gb:AAD20392.1" /protein_id="EOY21044.1" /db_xref="Phytozome:POPTR_0012s05220.1" /db_xref="TAIR:AT1G48840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LS55" /translation="MAVASKTRNMLEALVKEGSFKWLLSKRSSFGEEFEELERSPSAG RNWIPELSPVANIVVRRCSKILETSSSELQESFNAEASDSIKHKSRYARNFLEYCCFR ALALSTQVMGHLADKKFRRLTFDMMVAWEAPSAASQSLINLDDDLSVGVEAFSRIAPA VPIIANVIISENLFNVLTTSTGGRLHFSVYDKYLNGLGRVIKKMKSQSESSLLSSVRS SREEKILEVDGTVTTQPVLEHVGISTWPGRLILTDHALYFEALLVVSYDKPKRYDLSD DLKQIVKPELTGPWGTRLFDKAVLYKSISLSEPVVIEFPELKGHTRRDYWLAIIREIL YVHRFINKFNIAGIEKDDALSKAVLGILRAQAIQEISSSNSIQFESLLMFNLCDQLPG GDLILETLANMSSSRELDQDNNSVAGGGMYSISALAMVSNLGFVFGSSSSNLSEAGLV VGEVAVGEMSLLERTVKESRDNYKKVVRAQETVDGVKVDGIDTNLAVMKELLLPVMEV GKWLLSLVYWDDPLKSLVFCLLFTFIIFRGWLGYAFALMLLFFAIFMVLTRFCNQGRP AEEIKIIAPPPMNTMEQLLAVQNAISQVEQLIQDGNIVLLKFRALLLSIFPQASEKFA VTLLFTALILALMPSKYMVLLIFLETFTRYSPPRKASTERWMRRLREWWFSIPAAPVV LEREKEDKKRK" mobile_element 2489456..2489571 /note="source:MITE_Tourist_1 236 355" /mobile_element_type="transposon:TIR/MITE" gene complement(2501796..2504054) /locus_tag="TCM_012362" /note="dbxref CacaoGD:Thecc1EG012362" mRNA complement(join(2501796..2502391,2502505..2502582, 2502793..2502861,2502998..2503063,2503233..2503352, 2503470..2504054)) /locus_tag="TCM_012362" /product="BR enhanced expression 1" /inference="alignment:exonerate- protein:2:ricco:29974.m000242.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019445t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s05210.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2710t4" CDS complement(join(2502284..2502391,2502505..2502582, 2502793..2502861,2502998..2503063,2503233..2503352, 2503470..2503865)) /locus_tag="TCM_012362" /note="paralog of Thecc1EG019445t1" /codon_start=1 /product="BR enhanced expression 1" /protein_id="EOY21045.1" /db_xref="Phytozome:POPTR_0012s05210.1" /db_xref="TAIR:AT1G73830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2L2" /translation="MADFTSDFQSFKQSFSFLDIDPAMESLNQFAELSPGVIDNSALN FQSFLPFSNDSFFSNQAPEIPGNNWGENLPGFIHHSNQSSVVSVAQPTVTSKTEFHES KKRKALDVSESSSGNSSSPQVSESGIKRRNNPGRGKRARSNEKGEEKPKEVVHVRARR GQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEF LSMKLTAASTYYDFNSESDAMEKMQRAKAQEAKELDRLMRSEGYVGGLACFHSAAWSS LT" gene 2515405..2517370 /locus_tag="TCM_012363" /note="dbxref CacaoGD:Thecc1EG012363" mRNA join(2515405..2515761,2515881..2516010,2516478..2517370) /locus_tag="TCM_012363" /product="Myb domain protein 62, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008303001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009642t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008303001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02704t00001" CDS join(2515608..2515761,2515881..2516010,2516478..2517129) /locus_tag="TCM_012363" /note="paralog of Thecc1EG009642t1" /codon_start=1 /product="Myb domain protein 62, putative" /protein_id="EOY21046.1" /db_xref="Phytozome:GSVIVT01008303001" /db_xref="TAIR:AT1G68320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2L1" /translation="MSSLRKSSTSSSEDDAEQLRRGPWTLEEDSLLIHYIARHGEGRW NSLAKRAGLRRTGKSCRLRWLNYLKPDVKRGNLTPQEQFLILDLHSKWGNRWSKIAQH LPGRTDNEIKNYWRTRVQKQARHLKVDANSTAFQNVIRCYWIPRLLQKMEGSSSFSSM ASENSTVPQSLDQASQHQALMTLQQVPGQGPGNLSEAVQNLDHQEQNSDSEHCASSCV SSSESMNNISQISQFAEYQTSPFRIIGNNDYNNTLAKDCYYDMEAINLASTSAPGDFA NPVGDCHMPENNWFSNGFADDLWSMGELWELRNLN" gene 2520681..2522009 /locus_tag="TCM_012364" /note="dbxref CacaoGD:Thecc1EG012364" mRNA join(2520681..2521172,2521503..2522009) /locus_tag="TCM_012364" /product="Uncharacterized protein" /note="quality class is strong-expertchoice-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1291t1" CDS join(2521105..2521172,2521503..2521626) /locus_tag="TCM_012364" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21047.1" /translation="MIPFRGLCLHQSLNTYMTLESNRIRRSRKGHDKVATAFFMLLGD LRSMNLASSGSKQEGHLRK" gene 2522899..2525550 /locus_tag="TCM_012365" /note="dbxref CacaoGD:Thecc1EG012365" mRNA join(2522899..2523068,2524023..2524106,2524202..2524275, 2524362..2524485,2524904..2525086,2525301..2525550) /locus_tag="TCM_012365" /product="Ribosomal protein S7e family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g31560.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019441t1" /inference="similar to AA sequence:Phytozome:Glyma09g31560.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12102t00001" CDS join(2524032..2524106,2524202..2524275,2524362..2524485, 2524904..2525086,2525301..2525420) /locus_tag="TCM_012365" /note="paralog of Thecc1EG019441t1" /codon_start=1 /product="Ribosomal protein S7e family protein" /protein_id="EOY21048.1" /db_xref="Phytozome:Glyma09g31560.2" /db_xref="TAIR:AT1G48830.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HSS0" /translation="MYTSRKKIHKDKDAEPTEFEESVAQAFVDLENINQDLKSELKDL YINSAVQIDVSGSRKAVVIHVPYRLRKAFRKIHVKLVRELEKKFSGKDVILIATRRIL RPPKKGSAVQRPRTRTLTAVHEAMLEDIVLPAEIVGKRIRYRIDGSKIMKVFLDPKER NNTEYKLETFAAVYRKLAGKDVVFEYPVTEA" gene complement(2526104..>2532241) /locus_tag="TCM_012366" /note="dbxref CacaoGD:Thecc1EG012366" mRNA complement(join(2526104..2526348,2528150..2528231, 2528712..2528776,2528935..2529040,2529134..2529163, 2529288..2529371,2529453..2529477,2529751..2529872, 2530146..2530230,2530909..2531004,2531853..2532074)) /locus_tag="TCM_012366" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019432t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s03790.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12340t00001" mRNA complement(join(2526249..2526348,2528712..2528776, 2528935..2529040,2529134..2529163,2529288..2529371, 2529453..2529477,2529751..2529872,2530146..2530230, 2530909..2531004,2531853..2532052,2532209..>2532241)) /locus_tag="TCM_012366" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019432t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s03790.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12340t00001; inference alignment:Newbler:10:TSA:cgbaB_g12340t00001" mobile_element complement(2527150..2528412) /note="source:CACAO_M_S_E16683_F28_scaffold_2 581 1866" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(2528713..2528776,2528935..2529040, 2529134..2529163,2529288..2529371,2529453..2529477, 2529751..2529872,2530146..2530230,2530909..2531004, 2531853..2532052,2532209..>2532239)) /locus_tag="TCM_012366" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019432t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21050.1" /db_xref="Phytozome:POPTR_0015s03790.1" /db_xref="TAIR:AT1G67060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTN3" /translation="FEKRQNRTLXXLSLSLKQEHSTEDPTWKLFAVVGSFSFLSNKEM MKLNPNWELKNCCNHEQVVFLVTVAVCTVVILALWRTILLRPFKLVTVFLHEASHAIA CKLTCGHVEGIQVHADEGGTTQTRGGIYWLILPAGYLGSSFWGMVLILASTNLLTARI AAGCFVVALLVVLCVAKNWTLRGLCIGFVLFLGVVWVLQETTKIRILQYIILFIGVMN SLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGLISFLFLCGAMYLGL VILS" CDS complement(join(2528713..2528776,2528935..2529040, 2529134..2529163,2529288..2529371,2529453..2529477, 2529751..2529872,2530146..2530230,2530909..2531004, 2531853..2531954)) /locus_tag="TCM_012366" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019432t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21049.1" /db_xref="Phytozome:POPTR_0015s03790.1" /db_xref="TAIR:AT1G67060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTN3" /translation="MMKLNPNWELKNCCNHEQVVFLVTVAVCTVVILALWRTILLRPF KLVTVFLHEASHAIACKLTCGHVEGIQVHADEGGTTQTRGGIYWLILPAGYLGSSFWG MVLILASTNLLTARIAAGCFVVALLVVLCVAKNWTLRGLCIGFVLFLGVVWVLQETTK IRILQYIILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWG LISFLFLCGAMYLGLVILS" gene complement(2533579..2538724) /locus_tag="TCM_012367" /note="dbxref CacaoGD:Thecc1EG012367" mRNA complement(join(2533579..2534191,2534936..2535086, 2535237..2535474,2535584..2535794,2537507..2538196, 2538322..2538724)) /locus_tag="TCM_012367" /product="Cysteine-rich RLK 29 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030099t1" /inference="similar to AA sequence:ricco:29996.m000134" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc126t3_C1" mRNA complement(join(2533749..2534191,2534936..2535086, 2535237..2535474,2535584..2535794,2536293..2536445, 2537507..2537914)) /locus_tag="TCM_012367" /product="Cysteine-rich RLK 29 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05180.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_1414s00200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030099t1" /inference="similar to AA sequence:Phytozome:Glyma07g10340.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc77t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc126t3_C1" CDS complement(join(2533820..2534191,2534936..2535086, 2535237..2535474,2535584..2535794,2537507..2537707)) /locus_tag="TCM_012367" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29996.m000134; paralog of Thecc1EG030099t1" /codon_start=1 /product="Cysteine-rich RLK 29 isoform 1" /protein_id="EOY21051.1" /db_xref="TAIR:AT4G21390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2K9" /translation="MGIFAKLFSCIENHLLAVRSGSAGEDDADDGPDTHGLFFELSAL QIATNFFSELNLLGHGGFGPVYKGLMPNGQEVAVKKLSLDSRQGLKQFINEVKLLLKT QHKNLVILLGCCAEGPEKMLVYEYLPNKSLDYFLFGKYKSSSLDWQTRFQIVAGIARG LLYLHEEAPERIIHRDIKTSNILLDQHLNPKISDFGLARLFPGDDTHVNTFKISGTHG YMAPEYAMHGYLSVKTDVFSYGVVVLEIVSGRKNHDSRLGTEKADLLSYAWILFQGGQ SLDLVDPTLDKYNRDEAAMCIQLGLLCCQQTVSERPDMNSVHLMLSSDSFTLPRPGKP AIQGRAGRWTTTSTSAFTNTNASSMNTGVTRASGGSSFVEDYSRNSMSYSSIDEGR" CDS complement(join(2533820..2534191,2534936..2535086, 2535237..2535474,2535584..2535788)) /locus_tag="TCM_012367" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030099t1" /codon_start=1 /product="Cysteine-rich RLK 29 isoform 2" /protein_id="EOY21052.1" /db_xref="Phytozome:Glyma07g10340.1" /db_xref="TAIR:AT4G21390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2K9" /translation="MPNGQEVAVKKLSLDSRQGLKQFINEVKLLLKTQHKNLVILLGC CAEGPEKMLVYEYLPNKSLDYFLFGKYKSSSLDWQTRFQIVAGIARGLLYLHEEAPER IIHRDIKTSNILLDQHLNPKISDFGLARLFPGDDTHVNTFKISGTHGYMAPEYAMHGY LSVKTDVFSYGVVVLEIVSGRKNHDSRLGTEKADLLSYAWILFQGGQSLDLVDPTLDK YNRDEAAMCIQLGLLCCQQTVSERPDMNSVHLMLSSDSFTLPRPGKPAIQGRAGRWTT TSTSAFTNTNASSMNTGVTRASGGSSFVEDYSRNSMSYSSIDEGR" mobile_element complement(2540063..2542108) /note="source:INTACT157_F155_scaffold_1-int 922 3261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2540071..2542142 /note="source:INTACT700_F304_scaffold_7-int 6 2175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2542512..2543074 /note="source:CACAO_M_E12044_F76_scaffold_2 20853 21386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2545194..2548145 /note="source:CACAO_M_E69760_F9_scaffold_9 6697 9650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2548576..2548695 /note="source:scaffold_5_CACTA_0610 5152 5277" /mobile_element_type="transposon:TIR/CACTA" gene 2550554..2560271 /locus_tag="TCM_012371" /note="dbxref CacaoGD:Thecc1EG012371" mRNA join(2550554..2550907,2551884..2551948,2552055..2552130, 2552222..2552374,2552571..2552665,2555618..2555723, 2555795..2555841,2556117..2556447,2556591..2556680, 2556761..2557012,2558815..2558877,2559486..2559538, 2559632..2560013) /locus_tag="TCM_012371" /product="Associated molecule with the SH3 domain of STAM 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008310001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021319t2" /inference="similar to AA sequence:ricco:29996.m000133" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc401t3_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc417t1" mRNA join(2550554..2550907,2551884..2551948,2552055..2552130, 2552222..2552374,2552571..2552665,2555618..2555723, 2555795..2555841,2556108..2556447,2556591..2556680, 2556761..2556823,2556938..2557012,2558815..2558877, 2559486..2559538,2559632..>2559677) /locus_tag="TCM_012371" /product="Associated molecule with the SH3 domain of STAM 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008310001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021319t2" /inference="similar to AA sequence:ricco:29996.m000133" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc872t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc417t1" mRNA join(2550559..2550907,2551884..2551948,2552055..2552130, 2552222..2552374,2552571..2552665,2555618..2555723, 2555795..2555841,2556117..2556447,2556591..2556680, 2556761..2556823,2556938..2557012,2558815..2558877, 2559486..2559538,2559632..2560271) /locus_tag="TCM_012371" /product="Associated molecule with the SH3 domain of STAM 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008310001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021319t2" /inference="similar to AA sequence:ricco:29996.m000133" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc417t1" mRNA join(2550576..2550907,2551884..2551948,2552055..2552130, 2552222..2552374,2552571..2552665,2555618..2555723, 2555795..2555841,2556117..2556447,2556591..2556672, 2556761..>2556786) /locus_tag="TCM_012371" /product="Associated molecule with the SH3 domain of STAM 1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008310001" /inference="similar to AA sequence:ricco:29996.m000133" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc417t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc417t1" CDS join(2550791..2550907,2551884..2551948,2552055..2552130, 2552222..2552374,2552571..2552665,2555618..2555723, 2555795..2555841,2556117..2556447,2556591..2556680, 2556761..2557012,2558815..2558877,2559486..2559538, 2559632..2559806) /locus_tag="TCM_012371" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29996.m000133; paralog of Thecc1EG021319t2" /codon_start=1 /product="Associated molecule with the SH3 domain of STAM 1 isoform 3" /protein_id="EOY21055.1" /db_xref="TAIR:AT1G48790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYB5" /translation="MRSSTERRINIAASAQRLDVDDRISFRYYYRIADNILKQADIFR AEKNIIDLYIMLLRFSSLVSETIPCHRDYRASLQSQKVYLKKKLLNALSELEDLKPAV QQKISELNRKYTYQSNSLQQSSVKNQSLTYYGATKAVRPAAREFGYYGSRTQQFTYAK PMEEQFSRISLNLLRPKEETLSKHSILGPNGLYGQWQPPKSDIGVQYPSNIDLAPVEI PRLQQPVENELPGKNDHSNSEPEVPNTELTLAVGDSQKCHVDEPCSMISFDESETTPV HINVTRQPSPPPVLAEVQDLVHAITPQVTETDCRIENPSADGIVHSESPLQLHIATTM MESFMKLAKSNTDRNLETCGVLAGSLKNRKFYVTALIIPKQESTSDSVWRSHCGFTIS IHQSNFCDSPFCSAFSGLCNFFLFFMKCQTTNEEEIFEVQDKKSLFPLGWIHTHPTQS CFMSSIDLHTHYSYQIMLPESVAIVMAPRDTARKHGIFRLTTPGGMSVIRHCQQRGFH PHEQPPDGGPIYSSCTDVYMNPNLKFDVIDLR" CDS join(2550791..2550907,2551884..2551948,2552055..2552130, 2552222..2552374,2552571..2552665,2555618..2555723, 2555795..2555841,2556117..2556447,2556591..2556680, 2556761..2556823,2556938..2557012,2558815..2558877, 2559486..2559538,2559632..2559806) /locus_tag="TCM_012371" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29996.m000133; paralog of Thecc1EG021319t2" /codon_start=1 /product="Associated molecule with the SH3 domain of STAM 1 isoform 1" /protein_id="EOY21053.1" /db_xref="TAIR:AT1G48790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYB5" /translation="MRSSTERRINIAASAQRLDVDDRISFRYYYRIADNILKQADIFR AEKNIIDLYIMLLRFSSLVSETIPCHRDYRASLQSQKVYLKKKLLNALSELEDLKPAV QQKISELNRKYTYQSNSLQQSSVKNQSLTYYGATKAVRPAAREFGYYGSRTQQFTYAK PMEEQFSRISLNLLRPKEETLSKHSILGPNGLYGQWQPPKSDIGVQYPSNIDLAPVEI PRLQQPVENELPGKNDHSNSEPEVPNTELTLAVGDSQKCHVDEPCSMISFDESETTPV HINVTRQPSPPPVLAEVQDLVHAITPQVTETDCRIENPSADGIVHSESPLQLHIATTM MESFMKLAKSNTDRNLETCGVLAGSLKNRKFYVTALIIPKQESTSDSCQTTNEEEIFE VQDKKSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPRDTARKHGIF RLTTPGGMSVIRHCQQRGFHPHEQPPDGGPIYSSCTDVYMNPNLKFDVIDLR" CDS join(2550791..2550907,2551884..2551948,2552055..2552130, 2552222..2552374,2552571..2552665,2555618..2555723, 2555795..2555841,2556108..2556447,2556591..2556680, 2556761..2556823,2556938..2557012,2558815..2558877, 2559486..2559538,2559632..>2559677) /locus_tag="TCM_012371" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29996.m000133; paralog of Thecc1EG021319t2" /codon_start=1 /product="Associated molecule with the SH3 domain of STAM 1 isoform 2" /protein_id="EOY21054.1" /db_xref="TAIR:AT1G48790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYB5" /translation="MRSSTERRINIAASAQRLDVDDRISFRYYYRIADNILKQADIFR AEKNIIDLYIMLLRFSSLVSETIPCHRDYRASLQSQKVYLKKKLLNALSELEDLKPAV QQKISELNRKYTYQSNSLQQSSVKNQSLTYYGATKAVRPAAREFGYYGSRTQQFTYAK PMEEQFSRISLNLLRPKEETLSKHSILGPNGLYGQWQPPKSDIGVQYPSNIDLAPVEI PSVKRLQQPVENELPGKNDHSNSEPEVPNTELTLAVGDSQKCHVDEPCSMISFDESET TPVHINVTRQPSPPPVLAEVQDLVHAITPQVTETDCRIENPSADGIVHSESPLQLHIA TTMMESFMKLAKSNTDRNLETCGVLAGSLKNRKFYVTALIIPKQESTSDSCQTTNEEE IFEVQDKKSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPRDTARKH GIFRLTTPGGMSV" CDS join(2550791..2550907,2551884..2551948,2552055..2552130, 2552222..2552374,2552571..2552665,2555618..2555723, 2555795..2555841,2556117..2556447,2556591..2556672, 2556761..>2556786) /locus_tag="TCM_012371" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29996.m000133" /codon_start=1 /product="Associated molecule with the SH3 domain of STAM 1 isoform 4" /protein_id="EOY21056.1" /db_xref="TAIR:AT1G48790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYB5" /translation="MRSSTERRINIAASAQRLDVDDRISFRYYYRIADNILKQADIFR AEKNIIDLYIMLLRFSSLVSETIPCHRDYRASLQSQKVYLKKKLLNALSELEDLKPAV QQKISELNRKYTYQSNSLQQSSVKNQSLTYYGATKAVRPAAREFGYYGSRTQQFTYAK PMEEQFSRISLNLLRPKEETLSKHSILGPNGLYGQWQPPKSDIGVQYPSNIDLAPVEI PRLQQPVENELPGKNDHSNSEPEVPNTELTLAVGDSQKCHVDEPCSMISFDESETTPV HINVTRQPSPPPVLAEVQDLVHAITPQVTETDCRIENPSADGIVHSESPLQLHIATTM MESFMKLAKSNTDRNLETCGVLAEKQKVLCYS" gene 2566122..2568038 /locus_tag="TCM_012373" /note="dbxref CacaoGD:Thecc1EG012373" mRNA join(2566122..2567274,2567582..2568038) /locus_tag="TCM_012373" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009634t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s03820.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1319t3" CDS 2566255..2567025 /locus_tag="TCM_012373" /note="paralog of Thecc1EG009634t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21057.1" /db_xref="Phytozome:POPTR_0015s03820.1" /db_xref="TAIR:AT1G48780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T630" /translation="MMCSETSPRLSFSHDLGQADDLPIELDESRRDTMLLETCSDFEF NICSFEQQSSPADELFANGMILPVRLQERQRVQKCELPPPVSLPPRPKPSTAGDSKKD SMGQIRPASSDSEEKPQSKSFWGFKRSSSLNRDIKKSLVCSLPLLSRSNSTGSVPNPK RSSIKDINKHTSQKLSMTKSSSSSSSSSSSSCCSSCNAYKFPQKPPLKKNHGNSYGSG VRISPVLNVPPPYISKGTASLFGLGSFLRNGKDKKSRK" mobile_element 2569901..2569937 /note="source:scaffold_5_CACTA_0586 11650 11687" /mobile_element_type="transposon:TIR/CACTA" gene complement(2570462..2583374) /locus_tag="TCM_012374" /note="dbxref CacaoGD:Thecc1EG012374" mRNA complement(join(2570462..2571141,2571900..2571971, 2572425..2572484,2572610..2572844,2574270..2574407, 2574478..2574699,2574863..2575034,2575118..2576353, 2576463..2576631,2576973..2577201,2578068..2578408, 2578499..2578693,2580897..2581106,2582654..2583374)) /locus_tag="TCM_012374" /product="Zinc finger protein-related isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009598t1" /inference="similar to AA sequence:ricco:29996.m000130" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1424t4" mRNA complement(join(2570462..2571158,2571900..2571971, 2572425..2572484,2572610..2572844,2574270..2574407, 2574478..2574699,2574863..2575034,2575118..2576353, 2576463..2576631,2576973..2577201,2578068..2578408, 2578499..2578693,2580897..2581106,2582654..2583374)) /locus_tag="TCM_012374" /product="Zinc finger protein-related isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009598t1" /inference="similar to AA sequence:ricco:29996.m000130" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b011944t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1424t4" mRNA complement(join(2570462..2571141,2571900..2571971, 2572425..2572844,2574270..2574407,2574478..2574699, 2574863..2575034,2575118..2576353,2576463..2576631, 2576973..2577201,2578068..2578408,2578499..2578693, 2580897..2581106,2582654..2583374)) /locus_tag="TCM_012374" /product="Zinc finger protein-related isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009598t1" /inference="similar to AA sequence:ricco:29996.m000130" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b011944t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1424t4" CDS complement(join(2570998..2571141,2571900..2571971, 2572425..2572484,2572610..2572844,2574270..2574407, 2574478..2574699,2574863..2575034,2575118..2576353, 2576463..2576631,2576973..2577201,2578068..2578408, 2578499..2578693,2580897..2581106,2582654..2582938)) /locus_tag="TCM_012374" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29996.m000130; paralog of Thecc1EG009598t1" /codon_start=1 /product="Zinc finger protein-related isoform 1" /protein_id="EOY21058.1" /db_xref="TAIR:AT3G18290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPQ5" /translation="MAIPLPELQRREEAVVVSTSTVQTASFGGLSEEIEEKSPILMFL LFHKAVRNELDALHRLAMAFATGNSVDIQSLFQRYGFLRSIYKHHSIAEDEVIFPALD IRVKNVAKTYSLEHKGESNLFDHLFELLNSYMQADESFPRELASCTGALQTSISQHMA KEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSSFFSPDEYQDMKKCL SKIVPEEKLLQQVIFTWMEGRNGADISGKCHLNSTDGISQSLSSMTCPCESSKTGKRK YLEPSNNVLETDGTHPMNEILLWHNAIKRELNEIAEEARKIQLSGDFSNLSVFNERLQ FVAEVCIFHSIAEDKVIFPAVDGELSFSQEHAEEESQFNEFRCLIESIQNAGAVSTSA AEFYSKLCEHADQIMETIRTHFHNEEVQVLPILRKNFSFKRQRELLYQSLCVMPLRLI ERVLPWLVGSLTDNEAQNFLKNMQLAAPATDTALMTLYSGWACKGRNQGMCLSPHGNG CCVKRFTDIEEDFVRSCCACTSALCMKETCLSIHGDEVKRPVKKHTSESFKNGNASDQ SDTADGHKPSCNERSCYVPGLGVKCNNLGLSSLSTAKSLRSLSFSSSAPSLNSSLFVW ESDNNLSDIDSAERPIDTIFKFHKAISKDLEYLDVESGKLSDCDETFLRQFIGRFHLL WGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFADINSVLSELSHLKE SLSRGHVPENLTDNGTELYGAYDGDLLRKYNELATKLQGMCKSIRVTLDHHIFREELE LWPLFGRYFSVEEQDKLVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATK NTMFNEWLNECWKEPSQSSLQNEMSETGISLKENDFQESLDQSDQMFKPGWKDIFRMN QNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKLPQAASGETSNSEDVLGC SPSFRDTEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDEVSDHSMDRKATLEMMCMQ CLKIQPVGPICTTPSCNGLPMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDFF HCMTCNCCLGIKLVNHKCLEKGLETNCPICCDFLFTSSATVRALPCGHYMHSACFQAY TCSHYTCPICSKSMGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCDRKGTAGFH WLYHKCGNCGSYNTRVIKTETAATYCTTTQQ" CDS complement(join(2571045..2571158,2571900..2571971, 2572425..2572484,2572610..2572844,2574270..2574407, 2574478..2574699,2574863..2575034,2575118..2576353, 2576463..2576631,2576973..2577201,2578068..2578408, 2578499..2578693,2580897..2581106,2582654..2582938)) /locus_tag="TCM_012374" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29996.m000130; paralog of Thecc1EG009598t1" /codon_start=1 /product="Zinc finger protein-related isoform 2" /protein_id="EOY21059.1" /db_xref="TAIR:AT3G18290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPQ5" /translation="MAIPLPELQRREEAVVVSTSTVQTASFGGLSEEIEEKSPILMFL LFHKAVRNELDALHRLAMAFATGNSVDIQSLFQRYGFLRSIYKHHSIAEDEVIFPALD IRVKNVAKTYSLEHKGESNLFDHLFELLNSYMQADESFPRELASCTGALQTSISQHMA KEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSSFFSPDEYQDMKKCL SKIVPEEKLLQQVIFTWMEGRNGADISGKCHLNSTDGISQSLSSMTCPCESSKTGKRK YLEPSNNVLETDGTHPMNEILLWHNAIKRELNEIAEEARKIQLSGDFSNLSVFNERLQ FVAEVCIFHSIAEDKVIFPAVDGELSFSQEHAEEESQFNEFRCLIESIQNAGAVSTSA AEFYSKLCEHADQIMETIRTHFHNEEVQVLPILRKNFSFKRQRELLYQSLCVMPLRLI ERVLPWLVGSLTDNEAQNFLKNMQLAAPATDTALMTLYSGWACKGRNQGMCLSPHGNG CCVKRFTDIEEDFVRSCCACTSALCMKETCLSIHGDEVKRPVKKHTSESFKNGNASDQ SDTADGHKPSCNERSCYVPGLGVKCNNLGLSSLSTAKSLRSLSFSSSAPSLNSSLFVW ESDNNLSDIDSAERPIDTIFKFHKAISKDLEYLDVESGKLSDCDETFLRQFIGRFHLL WGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFADINSVLSELSHLKE SLSRGHVPENLTDNGTELYGAYDGDLLRKYNELATKLQGMCKSIRVTLDHHIFREELE LWPLFGRYFSVEEQDKLVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATK NTMFNEWLNECWKEPSQSSLQNEMSETGISLKENDFQESLDQSDQMFKPGWKDIFRMN QNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKLPQAASGETSNSEDVLGC SPSFRDTEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDEVSDHSMDRKATLEMMCMQ CLKIQPVGPICTTPSCNGLPMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDFF HCMTCNCCLGIKLVNHKCLEKGLETNCPICCDFLFTSSATVRALPCGHYMHSACFQAY TCSHYTCPICSKSMGDMAVYFGMLDALLAAEELPEEYRDRCQCIWQSRIFCATIVIER AQQASIGCITSVEIVDLTTPA" mRNA complement(join(2571119..2571141,2571900..2571971, 2572425..2572484,2572610..2572844,2574270..2574699, 2574863..2575034,2575118..2576353,2576463..2576631, 2576973..2577201,2578068..2578408,2578499..2578693, 2580897..2581106,2582654..2582811)) /locus_tag="TCM_012374" /product="Zinc finger protein-related isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009598t1" /inference="similar to AA sequence:ricco:29996.m000130" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1041t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1424t4" mRNA complement(join(<2572444..2572470,2572610..2572844, 2574270..2574407,2574478..2574699,2574863..2575034, 2575118..2576353,2576463..2576631,2576973..2577201, 2578068..2578408,2578499..2578693,2580897..2581106, 2582654..>2582796)) /locus_tag="TCM_012374" /product="Zinc finger protein-related isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009598t1" /inference="similar to AA sequence:ricco:29996.m000130" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1328t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1424t4" mRNA complement(join(2572444..2572470,2572610..2572844, 2574270..2574699,2574863..2575034,2575118..2576353, 2576463..2576631,2576973..2577201,2578068..2578408, 2578499..2578693,2580897..2581106,2582654..2582796)) /locus_tag="TCM_012374" /product="Zinc finger protein-related isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009598t1" /inference="similar to AA sequence:ricco:29996.m000130" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1328t5; alternateUTRof:Thecc1EG012374t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1424t4" CDS complement(join(<2572444..2572470,2572610..2572844, 2574270..2574407,2574478..2574699,2574863..2575034, 2575118..2576353,2576463..2576631,2576973..2577201, 2578068..2578408,2578499..2578693,2580897..2581106, 2582654..>2582794)) /locus_tag="TCM_012374" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29996.m000130; paralog of Thecc1EG009598t1" /codon_start=1 /product="Zinc finger protein-related isoform 5" /protein_id="EOY21062.1" /db_xref="TAIR:AT3G18290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPQ5" /translation="AVRNELDALHRLAMAFATGNSVDIQSLFQRYGFLRSIYKHHSIA EDEVIFPALDIRVKNVAKTYSLEHKGESNLFDHLFELLNSYMQADESFPRELASCTGA LQTSISQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSSFFSP DEYQDMKKCLSKIVPEEKLLQQVIFTWMEGRNGADISGKCHLNSTDGISQSLSSMTCP CESSKTGKRKYLEPSNNVLETDGTHPMNEILLWHNAIKRELNEIAEEARKIQLSGDFS NLSVFNERLQFVAEVCIFHSIAEDKVIFPAVDGELSFSQEHAEEESQFNEFRCLIESI QNAGAVSTSAAEFYSKLCEHADQIMETIRTHFHNEEVQVLPILRKNFSFKRQRELLYQ SLCVMPLRLIERVLPWLVGSLTDNEAQNFLKNMQLAAPATDTALMTLYSGWACKGRNQ GMCLSPHGNGCCVKRFTDIEEDFVRSCCACTSALCMKETCLSIHGDEVKRPVKKHTSE SFKNGNASDQSDTADGHKPSCNERSCYVPGLGVKCNNLGLSSLSTAKSLRSLSFSSSA PSLNSSLFVWESDNNLSDIDSAERPIDTIFKFHKAISKDLEYLDVESGKLSDCDETFL RQFIGRFHLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFADINS VLSELSHLKESLSRGHVPENLTDNGTELYGAYDGDLLRKYNELATKLQGMCKSIRVTL DHHIFREELELWPLFGRYFSVEEQDKLVGRIIGTTGAEVLQSMLPWVTSALTQDEQNK MMDTWKQATKNTMFNEWLNECWKEPSQSSLQNEMSETGISLKENDFQESLDQSDQMFK PGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKLPQAASGE TSNSEDVLGCSPSFRDTEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDEVSDHSMDR KATLEMMCMQCLKIQPVGPICTTPSCNGLPMAKYYCNICKFFDDERNVYHCPFCNLCR VGRGLGIDFFHCMTCNCCLGIKLVNHKCLEKGLETNCPICCDFLFTSSATVRALPCGH YMHSACFQSLHLSDLQQ" CDS complement(join(2572508..2572844,2574270..2574407, 2574478..2574699,2574863..2575034,2575118..2576353, 2576463..2576631,2576973..2577201,2578068..2578408, 2578499..2578693,2580897..2581106,2582654..2582938)) /locus_tag="TCM_012374" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29996.m000130; paralog of Thecc1EG009598t1" /codon_start=1 /product="Zinc finger protein-related isoform 3" /protein_id="EOY21060.1" /db_xref="TAIR:AT3G18290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPQ5" /translation="MAIPLPELQRREEAVVVSTSTVQTASFGGLSEEIEEKSPILMFL LFHKAVRNELDALHRLAMAFATGNSVDIQSLFQRYGFLRSIYKHHSIAEDEVIFPALD IRVKNVAKTYSLEHKGESNLFDHLFELLNSYMQADESFPRELASCTGALQTSISQHMA KEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSSFFSPDEYQDMKKCL SKIVPEEKLLQQVIFTWMEGRNGADISGKCHLNSTDGISQSLSSMTCPCESSKTGKRK YLEPSNNVLETDGTHPMNEILLWHNAIKRELNEIAEEARKIQLSGDFSNLSVFNERLQ FVAEVCIFHSIAEDKVIFPAVDGELSFSQEHAEEESQFNEFRCLIESIQNAGAVSTSA AEFYSKLCEHADQIMETIRTHFHNEEVQVLPILRKNFSFKRQRELLYQSLCVMPLRLI ERVLPWLVGSLTDNEAQNFLKNMQLAAPATDTALMTLYSGWACKGRNQGMCLSPHGNG CCVKRFTDIEEDFVRSCCACTSALCMKETCLSIHGDEVKRPVKKHTSESFKNGNASDQ SDTADGHKPSCNERSCYVPGLGVKCNNLGLSSLSTAKSLRSLSFSSSAPSLNSSLFVW ESDNNLSDIDSAERPIDTIFKFHKAISKDLEYLDVESGKLSDCDETFLRQFIGRFHLL WGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFADINSVLSELSHLKE SLSRGHVPENLTDNGTELYGAYDGDLLRKYNELATKLQGMCKSIRVTLDHHIFREELE LWPLFGRYFSVEEQDKLVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATK NTMFNEWLNECWKEPSQSSLQNEMSETGISLKENDFQESLDQSDQMFKPGWKDIFRMN QNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKLPQAASGETSNSEDVLGC SPSFRDTEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDEVSDHSMDRKATLEMMCMQ CLKIQPVGPICTTPSCNGLPMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDFF HCMTCNCCLGIKLVNHKCLEKGLETNCPICCDFLFTSSATVRALPCGHYMHSACFQVS SLDCAHISVCFFVSCFSMYNYSLKELWRMII" CDS complement(join(2574474..2574699,2574863..2575034, 2575118..2576353,2576463..2576631,2576973..2577201, 2578068..2578408,2578499..2578693,2580897..2581106, 2582654..2582755)) /locus_tag="TCM_012374" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29996.m000130; paralog of Thecc1EG009598t1" /codon_start=1 /product="Zinc finger protein-related isoform 4" /protein_id="EOY21061.1" /db_xref="TAIR:AT3G18290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPQ5" /translation="MAFATGNSVDIQSLFQRYGFLRSIYKHHSIAEDEVIFPALDIRV KNVAKTYSLEHKGESNLFDHLFELLNSYMQADESFPRELASCTGALQTSISQHMAKEE EQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSSFFSPDEYQDMKKCLSKI VPEEKLLQQVIFTWMEGRNGADISGKCHLNSTDGISQSLSSMTCPCESSKTGKRKYLE PSNNVLETDGTHPMNEILLWHNAIKRELNEIAEEARKIQLSGDFSNLSVFNERLQFVA EVCIFHSIAEDKVIFPAVDGELSFSQEHAEEESQFNEFRCLIESIQNAGAVSTSAAEF YSKLCEHADQIMETIRTHFHNEEVQVLPILRKNFSFKRQRELLYQSLCVMPLRLIERV LPWLVGSLTDNEAQNFLKNMQLAAPATDTALMTLYSGWACKGRNQGMCLSPHGNGCCV KRFTDIEEDFVRSCCACTSALCMKETCLSIHGDEVKRPVKKHTSESFKNGNASDQSDT ADGHKPSCNERSCYVPGLGVKCNNLGLSSLSTAKSLRSLSFSSSAPSLNSSLFVWESD NNLSDIDSAERPIDTIFKFHKAISKDLEYLDVESGKLSDCDETFLRQFIGRFHLLWGL YRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFADINSVLSELSHLKESLS RGHVPENLTDNGTELYGAYDGDLLRKYNELATKLQGMCKSIRVTLDHHIFREELELWP LFGRYFSVEEQDKLVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTM FNEWLNECWKEPSQSSLQNEMSETGISLKENDFQESLDQSDQMFKPGWKDIFRMNQNE LESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKLPQAASGETSNSEDVLGCSPS FRDTEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDEVSDHSMDR" CDS complement(join(2574474..2574699,2574863..2575034, 2575118..2576353,2576463..2576631,2576973..2577201, 2578068..2578408,2578499..2578693,2580897..2581106, 2582654..2582755)) /locus_tag="TCM_012374" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29996.m000130; paralog of Thecc1EG009598t1" /codon_start=1 /product="Zinc finger protein-related isoform 4" /protein_id="EOY21063.1" /db_xref="TAIR:AT3G18290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPQ5" /translation="MAFATGNSVDIQSLFQRYGFLRSIYKHHSIAEDEVIFPALDIRV KNVAKTYSLEHKGESNLFDHLFELLNSYMQADESFPRELASCTGALQTSISQHMAKEE EQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSSFFSPDEYQDMKKCLSKI VPEEKLLQQVIFTWMEGRNGADISGKCHLNSTDGISQSLSSMTCPCESSKTGKRKYLE PSNNVLETDGTHPMNEILLWHNAIKRELNEIAEEARKIQLSGDFSNLSVFNERLQFVA EVCIFHSIAEDKVIFPAVDGELSFSQEHAEEESQFNEFRCLIESIQNAGAVSTSAAEF YSKLCEHADQIMETIRTHFHNEEVQVLPILRKNFSFKRQRELLYQSLCVMPLRLIERV LPWLVGSLTDNEAQNFLKNMQLAAPATDTALMTLYSGWACKGRNQGMCLSPHGNGCCV KRFTDIEEDFVRSCCACTSALCMKETCLSIHGDEVKRPVKKHTSESFKNGNASDQSDT ADGHKPSCNERSCYVPGLGVKCNNLGLSSLSTAKSLRSLSFSSSAPSLNSSLFVWESD NNLSDIDSAERPIDTIFKFHKAISKDLEYLDVESGKLSDCDETFLRQFIGRFHLLWGL YRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFADINSVLSELSHLKESLS RGHVPENLTDNGTELYGAYDGDLLRKYNELATKLQGMCKSIRVTLDHHIFREELELWP LFGRYFSVEEQDKLVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTM FNEWLNECWKEPSQSSLQNEMSETGISLKENDFQESLDQSDQMFKPGWKDIFRMNQNE LESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKLPQAASGETSNSEDVLGCSPS FRDTEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDEVSDHSMDR" mobile_element complement(2585882..2586054) /note="source:scaffold_5_CACTA_0610 5108 5265" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2593898..2594957) /note="source:CACAO_M_E3969_F127_scaffold_1 1100 2160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2594741..2595002 /note="source:CACAO_M_E49205_F4_scaffold_6 10103 10355" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2594922..2595703) /note="source:scaffold_1_CACTA_0011 11726 12482" /mobile_element_type="transposon:TIR/CACTA" gene complement(2597971..2609215) /locus_tag="TCM_012376" /note="dbxref CacaoGD:Thecc1EG012376" mRNA complement(join(2597971..2598004,2602586..2603129, 2603662..2603772,2603954..2604122,2609185..2609215)) /locus_tag="TCM_012376" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016766t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(2602658..2603129,2603662..2603772, 2603954..2604114)) /locus_tag="TCM_012376" /note="paralog of Thecc1EG016766t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21064.1" /translation="MTELRATVFDIDKDSVARPNGFSSYFYQQCWPIIADDLLAGVKD FFNGAKLRGGLISDNILLTHKLVGKIDYKARGGNVILKLDMMKAHDRSCYLIHSSLKS RNASQVGKIKFSPGGRITILRNVLSSLPIYLLQVLNPSVSVIEKIERLFNSFLWGGST DSKKIHWASWAKLTFPGSEGGLDIQSLNDVFEAFSAKLWWQFQACSNLWTQYIRTKYC TGKNPHTIITKPHDSPTWKRMISGRDKSG" gene complement(2606492..2607514) /locus_tag="TCM_012377" /note="dbxref CacaoGD:Thecc1EG012377" mRNA complement(2606492..2607514) /locus_tag="TCM_012377" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage" CDS complement(2607275..2607478) /locus_tag="TCM_012377" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21065.1" /translation="MAAGRLSDPPLTIPPVALSLQRHPRPSHNPTALENPQLPLPHGL PQAIQNMNQPPISPRTTKIHFCL" mobile_element 2607574..2607837 /note="source:CACAO_on_S_E390_scaffold_9 2595 2850" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2607802..2607986) /note="source:INTACT51_F23_scaffold_9-int 5257 5440" /mobile_element_type="retrotransposon:LTR/Copia" gene 2609369..2613601 /locus_tag="TCM_012378" /note="dbxref CacaoGD:Thecc1EG012378" mRNA 2609369..2613601 /locus_tag="TCM_012378" /product="Delta-adaptin" /inference="alignment:exonerate-protein:2:frave:gene25140" /inference="similar to AA sequence:Phytozome:POPTR_0015s03830.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1663t1" CDS 2609820..2612645 /locus_tag="TCM_012378" /codon_start=1 /product="Delta-adaptin" /protein_id="EOY21066.1" /db_xref="Phytozome:POPTR_0015s03830.1" /db_xref="TAIR:AT1G48760.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2K4" /translation="MSGPSLIDSLFQRTLEDLIKGLRQQLIGEQAFISKALEEIRKEI KSTDLSTKSTALLKLSYLSSLHFHDMAFASFHALEVLSSPRFSHKKIAYHAISLSFHD STPVLLLITNHLRKDLTSTNEFEVSLSLQCLSRIANVDLARDLTPEIFTLLSSNKLYV RKRAVAVVLRVFEKYPDSVRVCFKRLVENLENYDPQILSAVVGVFCELACKDPRSYLP LAPEFYKILVDSKNNWVLIKVLKILAKLAPLEPRLAKRVVEPVCDHMRRTGAKSLLFE CVRTVVTSLSEYDSAVRLAVGKVREFLVDEDPNLKYLGLQALSIVAPKHLWAVSENKE VVIKSLSDADPNIKIESLHLVMAMVSEHNVAEISRVLVNYALKADPEFCNEILNSILS TCSRNLYEIIVDFDWYVSLLGEMSRIPHCQKGEEIENQLIDIGLRVKQVRPELVRVAR DLLIDPALLGNPFLHRVLSAAAWASGEYVEFSRNPLELMEALLQPRTSLLPPSIRAIY IQSAFKVLVFCLHTYLMQRESTTSSACPDNLPSGVSASVSYESFDGLSVENGGDAAVT HSLTSTSASMTDESIVNLLNLVEIALGPLLGSHDVEVQGRARNVLGFVDMTKLDLLNP SAQEDKGLERKGVEAYKTIELMHDAFSEELGPVSLTAQGKVPLPDGLMLKENLGDLEM ICGDIELPSSNSFSFGSPYEEKVGVSFSNLQIKEDFEQSNESTSLLAEHRKRHGLYYL PSGKSEIISNDYPPANDPTSQGNVNDNSDDLAKLTEESLFPKKKPNHAKPRPVVVKLD EVDEKPIAMKKPEAKDDSLSGAVRDILLGSEDVIPTSSRSNLSGKPSSKRRGKEKQDT DPHVESKENLVDDGNPSSRRRKHHSHGKERRHKSPRKKNAEEREDNGQKEKEKSSHRH GRHKSRRRADELLNVSPQTPVIPDFLL" mobile_element 2612959..2613127 /note="source:CACAO_Helitron_S_E26_scaffold_3 1 169" /mobile_element_type="transposon:Helitron" gene 2613669..2618192 /locus_tag="TCM_012379" /note="dbxref CacaoGD:Thecc1EG012379" mRNA join(2613669..2614126,2615158..2615190,2615652..2616377, 2617286..2618192) /locus_tag="TCM_012379" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein" /inference="alignment:exonerate-protein:2:frave:gene03700" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019407t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s03840.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc5111t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5571t1" mobile_element complement(2613768..2613817) /note="source:CACAO_on_SS_E42_scaffold_2 17557 17606" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2613818..2613865) /note="source:scaffold_9_CACTA_0946 3676 3723" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2613987..2614940) /note="source:CACAO_M_E49279_F74_scaffold_6 1002 1935" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(2615179..2615190,2615652..2616377,2617286..2617939) /locus_tag="TCM_012379" /note="paralog of Thecc1EG019407t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein" /protein_id="EOY21067.1" /db_xref="Phytozome:POPTR_0015s03840.1" /db_xref="TAIR:AT5G11730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T919" /translation="MASKVERHSISLGWTQPHEFHLNVRFDVFAIDSIKKIAYLSSFF SHTIQAKAMGNETEKTPTSAKLFSSHFQLVHLFHLVSFVIGLSLGIIVSSNSHLHIDH LFSFSSLQPLLSPPPPPPPSLLPLSPPPLPPPPSLPPPPPPPPSVPHHSSFDSNIWPP LMHNMSDEELFWRASFVPRVKEFPFENVPKIAFMFLTKGALPLAPLWEMFFKGHEGLY NIYVHPHPLYKDSVPEDSVFYGRRIPSKPVEWGKKTMIDAERRLLANALLDFTNDRFV LLSETCIPLFNFTTIYNYLLNSNQSYIGSYDDPRKVGRGRYNPKMFPAISIAQWRKGS QWFEVTRSLAIEIVSDKKYYESFRKYCSPPCYMDEHYIPTLVYIAWPEQNSNRSVTWV DWSKAGPHPGKFGKGAISEDFLNKVRFAGNCCYNGNITSMCFLFARKFLPNTLQPLLD IATMLLSSNQFLT" mobile_element complement(2616585..2616658) /note="source:INTACT433_F212_scaffold_1-int 3066 3140" /mobile_element_type="retrotransposon:LTR/Copia" gene 2624399..2627915 /locus_tag="TCM_012380" /note="dbxref CacaoGD:Thecc1EG012380" mRNA join(2624399..2625616,2627098..2627915) /locus_tag="TCM_012380" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008320001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009590t1" /inference="similar to AA sequence:Phytozome:Glyma10g41840.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1330t1" CDS join(2624963..2625616,2627098..2627733) /locus_tag="TCM_012380" /note="paralog of Thecc1EG009590t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative" /protein_id="EOY21068.1" /db_xref="Phytozome:Glyma10g41840.1" /db_xref="TAIR:AT1G68390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SJ19" /translation="MNMNVMEQQRLHAQVQYNDVVRYVLLFGFGLGLGITLSFYLKES SLDSQLNRLSTSPFLVPCAVLNPPPPSTNSSSISNQNKNLVETRILPLLIEPSPPQDD TVSTSPPQDNIVSNQTKKYTIEEFFQPPEITMHDMKDKELFWRASMAPKIQEYPIERV PKLAFLFLTRGKVLLAPIWEKFFQGHQGLYSIYVHSSPSFNETVPQGSVFYGRQIPSK NVSWGEMNMVAAERRLLANALLDISNERFVLVSESCIPLFNFTTIYKYLIHSEKSHVE SFDVPGPVGRGRYSSEMEPVVTIEQWRKGSQWFEMDRFLAIEVISDQTYFPVFNLFCK DACYGDEHYLPTFVGINFLERNLNRTLTYVDWSKGGPHPYTFESSDVTKEFLEKLRNS SCYYNGEKADICYLFARKFAANTLDRLLSFAPEVMYF" mobile_element 2630061..2632410 /note="source:CACAO_M_E12289_F140_scaffold_3 1 2316" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2632417..2644025 /note="source:INTACT59_F126_scaffold_9-int 2664 14260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2643567..2646377) /note="source:INTACT89_F140_scaffold_9-int 246 3025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2645547..2646683 /note="source:INTACT464_F222_scaffold_9-int 13310 14423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2646713..2646832) /note="source:scaffold_4_CACTA_0506 6937 7054" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2646777..2646862) /note="source:CACAO_PIF_E54_scaffold_3 8900 8983" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2647300..2647864 /note="source:CACAO_MITE22_scaffold_2 2 573" /mobile_element_type="transposon:TIR/MITE" gene 2651959..2656218 /locus_tag="TCM_012384" /note="dbxref CacaoGD:Thecc1EG012384" mRNA join(2651959..2652048,2652225..2652291,2652589..2653135, 2654580..2654740,2654842..2655036,2655134..2655230, 2655323..2656218) /locus_tag="TCM_012384" /product="Calmodulin binding protein-like, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029981t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s03860.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1437t2" CDS join(2651960..2652048,2652225..2652291,2652589..2653135, 2654580..2654740,2654842..2655036,2655134..2655230, 2655323..2655576) /locus_tag="TCM_012384" /note="paralog of Thecc1EG029981t1" /codon_start=1 /product="Calmodulin binding protein-like, putative" /protein_id="EOY21069.1" /db_xref="Phytozome:POPTR_0015s03860.1" /db_xref="TAIR:AT1G73805.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SJ21" /translation="MAAKRLPSESCSDQDEPNEKRMRPRPSLASVIGEAVMVNYLCTA LEPVLRRVVNEEVERSLGQRLRSFSRSPSLRIQAPEPSTLQLIFAKGLSLPIFTGSKI TDEEGNQLQVVLVDTRGDQMVPVLPPSPIKVDIVVLDGEFPAGDGNNWTSEEFDRNIV RERTGKRPLLTGELAVTVRDGVASIGEIEFTDNSSWIRSRKFRIGAKVAQGSFQGVRI REAMTEAFVVKDHRGELYKKHYPPMLDDKVWRLEKIGKDGAFHKKLSFEGVNTVQDFL KLSVVDPAKLRRILGPGMSEKMWEVTIKHAKTCVLGNKNYVFRGPNYTIFLNPICQLM KAEINGSIYPTHNLSNMNRAYIENLVRQAYANWNTLEEIEGVSHEIGLLTQGDEHMAD QYPNHQQITVRSFQPNGYLTGGSIEGYMPNELRGDGSNWQVSQAYLNTSNENGFRLNI LESTSDEDLTSPRSFITGG" gene complement(2655794..2665434) /locus_tag="TCM_012385" /note="dbxref CacaoGD:Thecc1EG012385" mRNA complement(join(2655794..2656333,2657471..2657521, 2658346..2658451,2659589..2659707,2665296..2665434)) /locus_tag="TCM_012385" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(join(2656238..2656333,2657471..2657521, 2658346..2658451,2659589..2659668)) /locus_tag="TCM_012385" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21070.1" /translation="MQIHQDHRSRKDIKDFEGFHNQMDSMKEANRVTHELAKFVKDLE EGWIIWRDVANLAGTVQKEAHEDTESSFLGYGLRKVSTIATNAAGSLRSQDLKEDFKC TKPSRFVS" gene complement(2659614..2660760) /locus_tag="TCM_012386" /note="dbxref CacaoGD:Thecc1EG012386" mRNA complement(2659614..2660760) /locus_tag="TCM_012386" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(2660093..2660446) /locus_tag="TCM_012386" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21071.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B4R8" /translation="MLFVMRQVEVVDSGTCSHVTVRRDFFTSYTSGDYGILRMANNGV SRVTSIKAVCVKTSIGTKLFLNNVKHAPDNYLHLISTSVHDDKSYFNTFGGEKWKLTK GSLIMGHGKKHSGLY" mobile_element 2662097..2662174 /note="source:scaffold_8_CACTA_0855 2530 2608" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2663978..2664360) /note="source:CACAO_MITE208_scaffold_211 7 372" /mobile_element_type="transposon:TIR/MITE" gene 2665799..2667924 /locus_tag="TCM_012387" /note="dbxref CacaoGD:Thecc1EG012387" mRNA join(2665799..2666086,2666634..2666691,2666968..2667084, 2667297..2667409,2667507..2667924) /locus_tag="TCM_012387" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(2665967..2666086,2666634..2666691,2666968..2667084, 2667297..2667409,2667507..2667743) /locus_tag="TCM_012387" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21072.1" /translation="MRNLKEKRTVGPIKWRCIVASGDEVPFGLELMEEGDDHGNLTNA MTAPQRLTGLIQMHSVIACQLRWAMRKHTRDMLELKASIQSLKDAMQTFKDCIVGKMM NLVLSENIDHDIDGAEGDNVNHVDDVVDDVVAGDFRLKKTMFLKLMQLLRQLWERMGN LNQFRLKENMFLKPIQLLRRLREGMKTLNQFRLKETMILNALLKVAPHGCCGSN" gene 2672230..2673168 /locus_tag="TCM_012388" /note="dbxref CacaoGD:Thecc1EG012388" mRNA 2672230..2673168 /locus_tag="TCM_012388" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012406t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" gene 2672239..2676968 /locus_tag="TCM_012389" /note="dbxref CacaoGD:Thecc1EG012389" mRNA join(2672239..2673046,2674102..2674110,2674417..2674749, 2674851..2675227,2675366..2675609,2675682..2675912, 2676108..2676607,2676736..2676968) /locus_tag="TCM_012389" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.21 coverage" CDS 2672293..2672712 /locus_tag="TCM_012388" /note="paralog of Thecc1EG012406t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21073.1" /translation="MDALFFFSPSFFSFISIFFLLNFFRVSYTEDDVHFTLCDPFECG NFRNLSYPFWTDDLHRPAYCAYDHEAYKLKCKQNQPPVVTIGSQEFQVVHLYQPRGLM TIQRLELGENTCPQEIFTYYIINYSDTAANITLFYDC" CDS join(2672773..2673046,2674102..2674110,2674417..2674749, 2674851..2675227,2675366..2675609,2675682..2675912, 2676108..2676511) /locus_tag="TCM_012389" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21074.1" /translation="MFFKNDENPRGKYCGEEVEVPVEKKARDGLMSGTRALDKTLPEP FKTKYFADDNYRRQCKDSGGRCGFNTTSTKVFVCYCRDRPHLIKCEPGGKASRGNGAA VGRDSSKKIWNPRVAWSIGLWRASLYLVLVYNISPRVPWSALKSIFYYCGVVMDVFLP SSNKARATRFAFIRYKEKEEAFRTAKLGNGRLVDGRRIFVKYAAPGVTHGDQPSNHDV LGCSLQNPVKGKEPSCSQDKVPIVSAEAVSSVNEGSPHILPVYNVPNSRMEDVLLPSE EAPIMFNVPLCNMEWVDLSAVGVLKQDFLLSSVQSGLALNGISATVHRVKNFQVLRVP IHFWHHDFFIALAAHWGSFVAMNKSTATRSSFDHAVILIKPLNISSIPKEVQVRCNGD CFVTNLEPLFFSKAVDVSFEVGDNDMPMCSKASIHDADGCNSPVFILEEVENPDSPRT SGWNSPLHGHSPLHGHSPLTSQQVDDLNYNEVDLATAGIESFFRSHVGLKLEGNSLGH ESLLEPGLLLAHIDSATHLFSKPSNVYRGKNNIVSSASRAFFADKLVDLNLRLVFLWH LKVAESGRNPEEKDLVASSKGSARISSPLANLKRQLGSTQPGESCNSLTMVIFKTSR" gene 2677419..2681724 /locus_tag="TCM_012391" /note="dbxref CacaoGD:Thecc1EG012391" mRNA join(2677419..2677983,2680527..2681724) /locus_tag="TCM_012391" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022646t1" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.93 coverage" CDS 2680624..2681118 /locus_tag="TCM_012391" /note="paralog of Thecc1EG022646t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21075.1" /translation="MVFNGKSWDGLQLMDIIKTRIAYWLKAQWDNSCLSFLDFFRNLE LGVVCSKKKSVKKNLDWIKLAPGKLKFNVDGAAKGCLGETGIGGVLRDYEGRIKLQFS KSTGWGDSNLAELLAIKEAFLLFAASPWLNFCLLIIESDSSNVVKWILKPEESLWSFN NIIR" gene complement(2686670..2690204) /locus_tag="TCM_012392" /note="dbxref CacaoGD:Thecc1EG012392" mRNA complement(join(2686670..2686958,2687217..2687269, 2688719..2688823,2689170..2689417,2689649..2690204)) /locus_tag="TCM_012392" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023690t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage" mobile_element complement(2686881..2690736) /note="source:INTACT39F_F22_scaffold_1-int 3571 7436" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(2688736..2688823,2689170..2689417, 2689649..2689792)) /locus_tag="TCM_012392" /note="paralog of Thecc1EG023690t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21076.1" /translation="MKEKTVGEEEKRNKNSALFLARFCCTLREEKRAFCCNFWRKKKA KNFEKNWSYLLIVCAGKVDSFVLPKLRSFDAGNLSWKSADFRAENGSKKGEKMRLLVT GFERKGREEATMVKGMTAGKKKKRKEEETKVCRGGVPNEVCDRQIRIIIYAYESIVK" mobile_element 2691465..2691516 /note="source:CACAO_M_E22186_F143_scaffold_3 9952 10003" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2691619..2692855 /locus_tag="TCM_012394" /note="dbxref CacaoGD:Thecc1EG012394" mRNA join(2691619..2692169,2692298..2692341,2692429..2692855) /locus_tag="TCM_012394" /product="PR5-like receptor kinase, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400028069" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012406t1" /inference="similar to AA sequence:Phytozome:POPTR_0463s00200.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(2691682..2692169,2692298..2692341,2692429..2692760) /locus_tag="TCM_012394" /note="paralog of Thecc1EG012406t1" /codon_start=1 /product="PR5-like receptor kinase, putative" /protein_id="EOY21077.1" /db_xref="Phytozome:POPTR_0463s00200.1" /db_xref="TAIR:AT5G38280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T913" /translation="MGFLRKFKNIKTMGFLKKFTKSDLGIEGFLKNNGTLAPKRYSYS NVREMTNSFKETLRKGGYGSVYKGKLLDGHLIAMKLLNTSKGNGQELINEVASISRTS HVNIVTLRVFCLEGNKRALIYEFMANGSLERFIYKENTNLKDHQYLTSEELYQIAIGI APGKESIVSMVEARGTIEMVGGRRNIDVTVSQSSEIYFPHWIYQRLEQGNVKPELLGL MTREETEIARKMILVGLWCIQTNPLDRPSMTEVIDMWEGSIDTLQIPPKPYLSSPPRS TIMDFTSLSLL" gene 2692188..2698541 /locus_tag="TCM_012395" /note="dbxref CacaoGD:Thecc1EG012395" mRNA join(2692188..2692463,2696508..2696622,2697142..2697184, 2697909..2698541) /locus_tag="TCM_012395" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036658t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(2696563..2696622,2697142..2697184,2697909..2698231) /locus_tag="TCM_012395" /note="paralog of Thecc1EG036658t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21078.1" /translation="MSSLSKSSRIVCAELRLQDTKNKVEFDLYNAFKITIEFCSDYYK TRSWVEGYAVPIYSIGHPSKWDISHNVQEIIVLPPTWRGQVGRPRWKRIPSAREDSRR CRCSQYKSYGHNRQNCLTPFAVPLTNSTPSSTQLTAQRR" mobile_element 2700044..2702739 /note="source:CACAO_M_E52267_F82_scaffold_7 1 2688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2702565..2703152) /note="source:CACAO_M_E35176_F7_scaffold_5 10218 10806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2711548..2712187 /note="source:INTACT257_F186_scaffold_6-int 17145 17788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2712188..2712548 /note="source:CACAO_M_E11864_F15_scaffold_2 1 361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2712649..2712932) /note="source:CACAO_M_E52071_F15_scaffold_7 2438 2721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2713033..2713681 /note="source:CACAO_M_E35176_F7_scaffold_5 11859 12507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2713782..2713956) /note="source:CACAO_M_E33933_F9_scaffold_4 16592 16766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2713956..2714074 /note="source:INTACT551_F248_scaffold_7-int 5911 6028" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2714240..2714957 /note="source:CACAO_M_E53587_F207_scaffold_8 19609 20327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2714945..2715005) /note="source:CACAO_M_E12344_F15_scaffold_3 2062 2123" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2714955..2717146 /note="source:CACAO_M_S_E119191_F3_scaffold_9 7068 9270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2718437..2724864 /note="source:CACAO_M_E12756_F7_scaffold_3 1 6473" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2724313..2727813) /note="source:CACAO_M_E1021_F7_scaffold_1 376 3912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2730477..2730623) /note="source:INTACT599_F268_scaffold_9-int 13360 13507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2731044..2731526) /note="source:scaffold_2_CACTA_0248 8794 9303" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2731602..2735339) /note="source:scaffold_2_CACTA_0248 5242 8450" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2735340..2738074 /note="source:CACAO_M_E12177_F73_scaffold_3 1 2726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2738075..2738797) /note="source:scaffold_2_CACTA_0248 4495 5238" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2738774..2741492) /note="source:scaffold_2_CACTA_0248 500 3192" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2741247..2741559 /note="source:CACAO_M_S_E16721_F36_scaffold_2 17233 17542" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2743351..2743413 /note="source:INTACT51_F23_scaffold_9-int 3094 3161" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2743794..2746117 /note="source:INTACT51_F23_scaffold_9-int 3136 5444" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2746167..2746544 /note="source:INTACT51_F23_scaffold_9-int 5438 5812" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2748597..2748712 /note="source:scaffold_9_CACTA_0929 9974 10081" /mobile_element_type="transposon:TIR/CACTA" gene 2748787..2753162 /locus_tag="TCM_012399" /note="dbxref CacaoGD:Thecc1EG012399" mRNA join(2748787..2749570,2752839..2753162) /locus_tag="TCM_012399" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03870.1" /inference="similar to AA sequence:ricco:29747.m001097" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1677t3" CDS join(2748826..2749570,2752839..2752900) /locus_tag="TCM_012399" /note="dbxref ricco:29747.m001097" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY21079.1" /db_xref="TAIR:AT1G18390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SFY3" /translation="MLLPLFFLIFLSLFFMNTHGNNTFLPSTCPSHDCGNGLEIRYPF WHNDSDTPNNHYCGYPHFGLRCADNGQPIFSLPNDNFYVKNINYDDYTFTLVDIDVVD QTCPRARHNLTLGTLPLYHSDLNLNLSFYFNCSSHPSNLTPVKCLGSNDLRSYVVTEE NDDGVDKSDLVISCEEKVEATVMKREINMNDLISGFGAAMNKGFVLDWRRMRECGACE ASQGFCGYSNAAHEFLCFCKNGQIGKDHCLDLVVPRSMATSMPITWMSHC" gene 2752186..2752865 /locus_tag="TCM_012400" /note="dbxref CacaoGD:Thecc1EG012400" mRNA 2752186..2752865 /locus_tag="TCM_012400" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc481t18" CDS 2752478..2752630 /locus_tag="TCM_012400" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21080.1" /translation="MTMGSSWNAMKHSVVESYKACSTLSGAVYGQDTAVMEGSSSFVK KISSLS" gene 2753925..2850592 /locus_tag="TCM_012401" /note="dbxref CacaoGD:Thecc1EG012401" mRNA join(2753925..2754687,2787139..2787220,2791729..2791893, 2816247..2816368,2849953..2850592) /locus_tag="TCM_012401" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G67000.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012417t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008327001" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc481t22_G2" CDS join(2753955..2754687,2787139..2787149) /locus_tag="TCM_012401" /note="paralog of Thecc1EG012417t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21081.1" /db_xref="Phytozome:GSVIVT01008327001" /translation="MHSQLILSIPSISMFIFFFISLFFLPISYCQDDENFVHCFSPFD CGDIKNLTYPFWTDGRPPLCQHEGFRLTKCKDQQPVINVSGNEFRLIYLNQSTYTMSI ARNDLWENICPANLINVNVESRVLRYHPRNRHLTFFYNCTPSLPNLFQCTGEGEFYSL YADDLFERDRYEDLRDSCGTAIQVQVNQSAFAELQNQTPQRLEAWKLGFDVVYNLAEI LCSACNNSRRGKCEILSSQYPICNNPAFY" gene 2761890..2766011 /locus_tag="TCM_012403" /note="dbxref CacaoGD:Thecc1EG012403" mRNA join(2761890..2762109,2763930..2763971,2764790..2766011) /locus_tag="TCM_012403" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012406t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400025681" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2065t1" CDS 2764873..2765916 /locus_tag="TCM_012403" /note="paralog of Thecc1EG012406t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY21082.1" /db_xref="Phytozome:PGSC0003DMP400025681" /db_xref="TAIR:AT5G38280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T913" /translation="MGFLKKFTKSDVDIEAFLKNNGTLALKRYTYSDVKKMTNSFEET LGKGGYGSVYKGKLLDGHLVAVKLLNTSKGNGQEFINEVASISRTSHVHVVTLRGFCL EGNKRALIYEFMPNGSLERFIYKENANFKDHRPLTSEELYRIAIGVAQGLEYLHRGCN TRILHFDIKPHNILLDENFCPKISDFGLAKLSNRKESIVSMLEARGTIGYIAPEVFCR NVGGVSHKSDVYSYGMMILEMVGGRRNIDVKVSQTSEIYFPHWIYQHLEQGNIKPELL GLMTREETEIARKMILVGMWCIQTNPIDRPSMTKVIDMLEGSIEALRIPPKPYLSSPS RSTAVDSTSLSLP" mobile_element 2766156..2767040 /note="source:CACAO_M_S_E16721_F36_scaffold_2 17787 18674" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2767041..2769902 /note="source:CACAO_M_E12180_F15_scaffold_3 1 2862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2769903..2770392 /note="source:CACAO_M_S_E16721_F36_scaffold_2 4040 4518" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2771359..2777229 /note="source:INTACT72F_F343_scaffold_2-int 616 6003" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2776853..2830032 /locus_tag="TCM_012406" /note="dbxref CacaoGD:Thecc1EG012406" mRNA join(2776853..2776932,2814510..2814899,2815886..2816961, 2817995..2818033,2822276..2823506,2829189..2829612, 2829917..2830032) /locus_tag="TCM_012406" /product="Kinase superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012403t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008328001" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1382t2" mobile_element 2777221..2779968 /note="source:INTACT524_F2_scaffold_3-int 886 3607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2779968..2781440 /note="source:INTACT524_F2_scaffold_3-int 3799 5262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2781441..2787946 /note="source:CACAO_M_S_E16721_F36_scaffold_2 11226 19189" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2785926..2788446) /note="source:CACAO_M_E57346_F74_scaffold_9 2291 4723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2788731..2789343 /note="source:INTACT726_F314_scaffold_5-int 13442 13899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2788907..2789302) /note="source:INTACT59_F126_scaffold_9-int 14365 14732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2793754..2795196 /note="source:CACAO_M_E12181_F9_scaffold_3 1 1443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2795760..2799796) /note="source:CACAO_M_E178_F2_scaffold_1 59 4142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2799777..2799830) /note="source:CACAO_M_E178_F2_scaffold_1 3376 3428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2800911..2802428) /note="source:CACAO_M_E52278_F17_scaffold_7 1 1531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2804468..2807424 /note="source:CACAO_M_E12182_F33_scaffold_3 1 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2808538..2810174 /note="source:CACAO_M_E12185_F15_scaffold_3 1 1637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2810983..2811494 /note="source:CACAO_M_E12185_F15_scaffold_3 1638 2149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2811495..2811538) /note="source:CACAO_M_E58819_F24_scaffold_9 3318 3359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2812070..2812199) /note="source:scaffold_2_CACTA_0256 17094 17226" /mobile_element_type="transposon:TIR/CACTA" CDS join(2816232..2816961,2817995..2818033,2822276..2823384) /locus_tag="TCM_012406" /note="paralog of Thecc1EG012403t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY21083.1" /db_xref="Phytozome:GSVIVT01008328001" /db_xref="TAIR:AT5G38260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NC81" /translation="MDLSHSFFSIISIFFLLIFFQVSYSKDDVHFTSCPHPFDCGNLG NLSYPFSTDDRPAYCGYDHEVYKLKCIPNQPPYITISSQEFQVVHLNQTHGLMTIQRV ESEENTCPEEIFTYDVFNYSDTAANITLLYGCPSRGFADNSFTCKKDQSETFAVFGNN DEYHCRGKVVEVPVEKKARDELIRGTRALDKTLFEPFEMRYFAFDDYCRQCKNSGGRC GSNKTLTAVFLCYCRDHPYPIKCERGGKGFSLGVKLPIVIAGIYLLITGVITIYFKYI KTMGFLKKFTKSDLDIEAFLKNNETLAPKRYTYSDVKKMTNSFKETLGKGGYGSVYKG KLLDGHLVAVKLLNTTEGNGQEFINEVASISRTSHVNVVTVRGFCLEGNKRALIYEFM ANGSLERFIYKENTNLKEHRRLTSEELYRIAIGIARGLEYLHRGCNTRILHFDIKPHN ILLDENFCPKISDFGLAKLSNMKESIVSMLEARGTIGYIAPEVFCKNVGGVSHKSDVY SYGMMILEMVGGRRNIDVKVSQTSEIYFPHWIYQHLDQGNIKPELLGLMTREETEIVR KMIFVGLWCIQTNPLNRLSMTEVIDMLEGSIEALRIPPKPYLSSPPRSTVMDSTSLSL P" gene 2819184..2819920 /locus_tag="TCM_012409" /note="dbxref CacaoGD:Thecc1EG012409" mRNA join(2819184..2819419,2819484..2819920) /locus_tag="TCM_012409" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2519t2" CDS join(2819231..2819419,2819484..2819543) /locus_tag="TCM_012409" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21084.1" /translation="MHFPYILCTLFIAILPLSFFFLPSPPFACISLTYANFSTPPLLR RVNLYHFLIPIPNLRSWLDRLWLLISGLISSSSGVGLC" mobile_element 2827528..2839345 /note="source:INTACT89_F140_scaffold_9-int 1 11605" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2837348..2842728) /note="source:INTACT59_F126_scaffold_9-int 1705 7098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2845633..2846045) /note="source:CACAO_M_E12289_F140_scaffold_3 1 391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2845746..2846028 /note="source:INTACT72F_F343_scaffold_2-int 11066 11352" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2847373..2848707 /locus_tag="TCM_012414" /note="dbxref CacaoGD:Thecc1EG012414" mRNA 2847373..2848707 /locus_tag="TCM_012414" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012417t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008327001" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS 2847480..2848316 /locus_tag="TCM_012414" /note="paralog of Thecc1EG012417t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21085.1" /db_xref="Phytozome:GSVIVT01008327001" /translation="MNSQLLLSTPSIYIFTFFLIGLFSLPISFCQDDENFEQCFSRFD CGDIKNLTCAYWTDDRPQLCKQEGFRLTKCDDGKPVILIGRYEFRMIYLNYFTYAMTI ARNDLWEKICPENPTNVTLDNPFLRYSPTNRYLTFFYNCSRSIPSSPNPNPFRCTEDL YSFYADDLVERARYGDLSDSCDTAIQVQVNQSAFAELQNQTPQRLEAWEKGFDVEYNL AEIFCSACNSRRGKCEILSSPEHPICIYPGMHNLLTPLFFRLICNICILPLVLIAGPN SQ" gene 2849233..2853342 /locus_tag="TCM_012415" /note="dbxref CacaoGD:Thecc1EG012415" mRNA join(2849233..2849784,2851222..2851260,2852120..2853342) /locus_tag="TCM_012415" /product="PR5-like receptor kinase, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012406t1" /inference="similar to AA sequence:Phytozome:Glyma07g10680.1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS 2852137..2852652 /locus_tag="TCM_012415" /note="paralog of Thecc1EG012406t1" /codon_start=1 /product="PR5-like receptor kinase, putative" /protein_id="EOY21086.1" /db_xref="Phytozome:Glyma07g10680.1" /db_xref="TAIR:AT5G38280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BW80" /translation="MGLLITCIIVMCFKRKSLYITTMGFLKKFTKSDLDIEAFLKTNE TLAPKRYSCSDVRKMINSFKETLGKGGYGSVYKGKLLDGHLVAVKLLNTSKGNGREFI NEVASISRTSHVNVVTLRGFCLEGNKRALIYEFMANGSLERFIYKDNTNVKDHRHLTS DELYRIAIGIA" gene 2859828..2861810 /locus_tag="TCM_012416" /note="dbxref CacaoGD:Thecc1EG012416" mRNA join(2859828..2859883,2859969..2860010,2860102..2861810) /locus_tag="TCM_012416" /product="Receptor-like protein kinase, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g31430.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009581t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400053239" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1348t1" CDS join(2859844..2859883,2859969..2860010,2860102..2861252) /locus_tag="TCM_012416" /note="paralog of Thecc1EG009581t1" /codon_start=1 /product="Receptor-like protein kinase, putative" /protein_id="EOY21087.1" /db_xref="Phytozome:PGSC0003DMP400053239" /db_xref="TAIR:AT5G38280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D3G6F0" /translation="MSPAKSPPSSNNGDRRGYLDWRVSRFIDLFIASNTYISSLDTGI GFVSGVIFAFAIIFGYKTIILVSQTINRKMKKDPNVEAYIKKYGSLAPKRYHSSDIKK MTNSFREKLGEGGFCSVYKGKLEDGRLVAVKVLKLDTIKGNGEEFINEVISISRTSHV NIVSLLGYCYTENRKALIFEFMPNGSLEKFIHKENVSTSGRLAWEKLQEIARGIARGL EYLHRGCNTRILHFDIKPHNILLDEDFCPKISDFGLAKPCPKESAISMVDARGTAGYI APEVFCRNFGRVSHKSDVYSFGMMILEMVGGRKNIDVAADHSSEMYYPHWVYDRLQQG NNLGLLGVMTSQDNDIAKKMIIIGLWCIQTYPVHRPSMNEVLFMLEGSLDALKIPPKP FIYTPTRSPINLCTAPIL" mobile_element complement(2861584..2861868) /note="source:CACAO_Again_on_E73_scaffold_3 663 946" /mobile_element_type="transposon:TIR/hAT" gene complement(2862183..2871918) /locus_tag="TCM_012417" /note="dbxref CacaoGD:Thecc1EG012417" mRNA complement(join(2862183..2863675,2863759..2864022, 2864142..2864177,2865066..2865752,2867475..2868125, 2870560..2871356,2871775..2871918)) /locus_tag="TCM_012417" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene25128" /inference="similar to AA sequence:Phytozome:GSVIVT01008327001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc481t24" CDS complement(join(2863146..2863675,2863759..2864022, 2864142..2864177,2865066..2865752,2867475..2868125, 2870560..2871356,2871775..2871887)) /locus_tag="TCM_012417" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY21088.1" /db_xref="Phytozome:GSVIVT01008327001" /db_xref="TAIR:AT1G18390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTN8" /translation="MINLSMLHMIMCSLLAEETSFSDLSAYKFIEISVWLLRLIISFN IYLLYQFFSLENFKMNSQLMLSTPSIFIFTFFLIGLFSLPISFCQDDENFEQCFSRFD CGDIKNLTYPYWTDDRPQLCKQEGFRLTKCEDEKPVIHIGRYEFRMVYLNHFTYAMTI SRNDLWEKICPENPINVTLENPFLRYSPTNRHLTFFYNCNLSIQPSPNPFRCTEDLYS FYADDLVERARYGDLSDSCDTAIQVQVNQSAFAELQNQTPQRLEAWKLGFDVVYNLAE ILCSACNNSRRGKCEILSSQYPICNNPDDVHFTSCPHPFDCGNLGNLSYPFSTDDRPA YCGYDHEVYKLKCIPNQPPYITISSQEFQVVHLNQAHGLMTIQRVESEENTCPEEIFT YNVFNYSDTAANITLLYGCPRRGFADNSFTCKKDQSETFAVFGNNDEYHCRGKVVEVP VEKKARDELIRGTRALDKTLFEPFEMRYFAYDHYCRQCKNSGGRCGSNKTLTAVFLCY CRDHPYPIKCERATETLSADWHFEACMPRSCGNGPNISYPFWISEEQESYCGYPNFEI TCEEKNPVLAISEDSFIIKDIFYNNNSLLVVTAAVSEDDCPTPRQNLSLDRTPFSLNL VNVNLSFLYNCEKRPEYHTYPVSCASNASFHSFAVFHKEGLEKTNYSLDSCQSLIDAP VYINDDVDFASLLEMNYTQVLSMGFVLNWTAHSCSNCKRSGGRCGFDNTSEFVCFCSD GSHPKTCNDGGGINWKAKLGIGFGALVGGIIITSIGFFCWQRRHRGKVFFKSSFVSGK SSSDRSVMMDAEKGDSLAGVHLFSYEELEKATNKFDSDRELGDGGFGTVYYGKLRDGR AVAVKRLYENNYRRVEQFMNEVEILTRLRHKNLVSLYGCTSRHSRELLLVYEYIPNGT VADHLHGERAKPGALPWSIRLEIAIETAEALRFLHASDTIHRDVKTNNILLDSNFSVK VADFGLSRLFPTDVTHVSTAPRGLRVMSIQNITSAITLLTRVMSLALGLYWSS" mobile_element complement(2878275..2878470) /note="source:scaffold_1_CACTA_0008 14240 14427" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2878612..2879814) /note="source:INTACT639F_F363_scaffold_5-int 4811 6049" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2880738..2881270) /note="source:scaffold_1_CACTA_0028 12051 12578" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2882528..2882785) /note="source:scaffold_1_CACTA_0028 11725 11954" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2883086..2884378 /note="source:scaffold_10_CACTA_0140 6243 7313" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2884700..2885054 /note="source:CACAO_M_E52630_F119_scaffold_7 1 265" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2884894..2887170) /note="source:INTACT44_F119_scaffold_6-int 6647 8949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2889842..2889919) /note="source:INTACT1306F_F379_scaffold_7-int 1902 1981" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2890273..2890947 /locus_tag="TCM_012421" /note="dbxref CacaoGD:Thecc1EG012421" mRNA 2890273..2890947 /locus_tag="TCM_012421" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene06088.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031263t1" /inference="similar to AA sequence:frave:gene17191" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc10547t1" CDS 2890317..2890808 /locus_tag="TCM_012421" /note="dbxref frave:gene17191; paralog of Thecc1EG031263t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21089.1" /translation="MKEEDQNTISILKRRLPCLSNELLQPLTYEEEDWRSPIIRDLFN PRSTVISRLKHFTLIHGVLYHKGSNGVLARCISSNEAKERLKAVHEQWYGEEGPSLHR LLQRAGYFWPTMSKDALQFQQSCSKCSKPSVVHECHFVESAGDWRRPYIDFLQNGILP TNL" mobile_element complement(2892345..2896289) /note="source:INTACT44_F119_scaffold_6-int 2133 6179" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2897378..2898352 /locus_tag="TCM_012424" /note="dbxref CacaoGD:Thecc1EG012424" mRNA 2897378..2898352 /locus_tag="TCM_012424" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012419t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete" mobile_element 2897395..2897467 /note="source:INTACT567_F258_scaffold_9-int 9926 10004" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 2897468..2897719 /locus_tag="TCM_012424" /note="paralog of Thecc1EG012419t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21090.1" /translation="MYYLQKNYLSGVPSVEVPRRVPSEEALRGVPSMETPREFQARKC PGVFQAWKYPGVFQARKLPGVFQAWNRGSAQGSSKRGSA" mobile_element 2897782..2897955 /note="source:INTACT567_F258_scaffold_9-int 172 353" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2901085..2902738) /locus_tag="TCM_012425" /note="dbxref CacaoGD:Thecc1EG012425" mRNA complement(join(2901085..2901904,2902052..2902738)) /locus_tag="TCM_012425" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene19754" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012428t1" /inference="similar to AA sequence:frave:gene19754" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11191t00001" CDS complement(join(2901405..2901904,2902052..2902475)) /locus_tag="TCM_012425" /note="dbxref frave:gene19754; paralog of Thecc1EG012428t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21091.1" /db_xref="TAIR:AT1G12030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZJ3" /translation="MMSRIPARLNRIAVAFNEAAKAPRRLCESSGSEHSPEGSTDLSD LVNSFFERDFEVENDEGKVHQEGEKELDETDGYWSESEAKHTLQSLLSNAHDGNQEDE MKQKICRETELACGIIGDRLSKDFKRQLMSRLRDKGFDAGLCKSQWKKLRYYPAGNYE YVDVNVNGTCYIVEVNLAREFEIARPTTSYASLLEVLPPIYVGKSKDLKQIVKLTCTA MRESMKRRDMHMPPWRLSGYMQSKWFASYRRTVNELPARDAPEFNDSAPAKRPVGFDS IPAISFHCRDNFASKSGLKVGYLAAAFNGTS" mobile_element 2904330..2908631 /note="source:INTACT714_F310_scaffold_9-int 1 4252" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2908646..2910899 /note="source:CACAO_M_E48316_F72_scaffold_6 1 2270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2910900..2913626 /note="source:CACAO_M_E12192_F73_scaffold_3 1 2727" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2913627..2914331) /note="source:INTACT19F_F94_scaffold_1-int 3839 4532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2914314..2917435 /note="source:INTACT714_F310_scaffold_9-int 4261 7367" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2918266..2918657) /note="source:INTACT481_F226_scaffold_1-int 9784 10191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2918792..2922029 /note="source:INTACT714_F310_scaffold_9-int 7803 10530" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2922030..2925002 /note="source:CACAO_M_E12193_F33_scaffold_3 1 5037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2925011..2925895 /note="source:INTACT714_F310_scaffold_9-int 11544 12429" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2926862..2928563) /locus_tag="TCM_012428" /note="dbxref CacaoGD:Thecc1EG012428" mRNA complement(join(2926862..2927568,2927889..2928563)) /locus_tag="TCM_012428" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s00710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012425t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s00710.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:PASA:2:TSA:puevd3b012004t1a2; inference alignment:Newbler:10:TSA:cgbaB_g07848t00001" mRNA complement(join(2926930..2927682,2927889..2928553)) /locus_tag="TCM_012428" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s00710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012425t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s00710.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07848t00001; inference alignment:Newbler:10:TSA:cgbaB_g07848t00001" CDS complement(join(2927165..2927568,2927889..2928318)) /locus_tag="TCM_012428" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012425t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21093.1" /db_xref="Phytozome:POPTR_0011s00710.2" /db_xref="TAIR:AT1G62420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZJ3" /translation="MMARIPVRFNRIAAAFNEAAMAQPVRLCESSGSDHSPEDLTDLS DLVNSFIESNCGVENDEGKIEQEKENENDGTEAIWSDSETKDMLRRLMVNNICDGNED DEVKQKILLQTKLACGSIGDMSSVGFKRQLMSRLRDKGFDAEFEIARPTTNYTSLIDV FPRIFVGKPEELKQIVGLMCRAMRESMKSKGMKVPPWRQNRYVQAKWFAQYKRTTNEI SAKKASQKNDAVTTTRSVGFETLPTVSYYCRDNIATKGGLKVGYLHAAFNSSASVGLQ S" CDS complement(join(2927165..2927682,2927889..2928318)) /locus_tag="TCM_012428" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012425t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21092.1" /db_xref="Phytozome:POPTR_0011s00710.2" /db_xref="TAIR:AT1G62420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZJ3" /translation="MMARIPVRFNRIAAAFNEAAMAQPVRLCESSGSDHSPEDLTDLS DLVNSFIESNCGVENDEGKIEQEKENENDGTEAIWSDSETKDMLRRLMVNNICDGNED DEVKQKILLQTKLACGSIGDMSSVGFKRQLMSRLRDKGFDAGLCKSRWEKLERHPAGS YEYVDVNVTGTRYIIEVNLAAEFEIARPTTNYTSLIDVFPRIFVGKPEELKQIVGLMC RAMRESMKSKGMKVPPWRQNRYVQAKWFAQYKRTTNEISAKKASQKNDAVTTTRSVGF ETLPTVSYYCRDNIATKGGLKVGYLHAAFNSSASVGLQS" gene 2928950..2956540 /locus_tag="TCM_012429" /note="dbxref CacaoGD:Thecc1EG012429" mRNA join(2928950..2929416,2929638..2930040,2943478..2943635, 2956433..2956540) /locus_tag="TCM_012429" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(2929226..2929416,2929638..2929779) /locus_tag="TCM_012429" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21094.1" /translation="MVVLKGQLVTVSRHTSLLAARTILLSSPVTTWKIDAGFCFWEFQ NPVFAGFGMTKFNEPTFMSRCIGLLFQLGTLGEGKLILLVKGERFQNCSNEPDPFCRQ EAVFQKKA" mobile_element 2935984..2936976 /note="source:CACAO_M_E44425_F33_scaffold_6 4662 5651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2954878..2955784) /note="source:CACAO_MITE_S250_scaffold_10 2 946" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(2955790..2956421) /note="source:INTACT261_F189_scaffold_2-int 4233 4870" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2957973..2958175) /note="source:INTACT261_F189_scaffold_2-int 4050 4252" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2961052..2961084) /note="source:scaffold_1_CACTA_0016 12260 12305" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2961085..2961138 /note="source:INTACT19F_F94_scaffold_1-int 14260 14313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2961139..2961176) /note="source:scaffold_1_CACTA_0016 12204 12259" /mobile_element_type="transposon:TIR/CACTA" gene 2966653..2972749 /locus_tag="TCM_012430" /note="dbxref CacaoGD:Thecc1EG012430" mRNA join(2966653..2967445,2967801..2968012,2970011..2970302, 2970396..2970481,2971890..2972749) /locus_tag="TCM_012430" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g31280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009536t1" /inference="similar to AA sequence:Phytozome:Glyma09g31280.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:PASA:2:TSA:puevd3b012006t1a2; inference alignment:Newbler:10:TSA:cgbaB_g01737t00001" mRNA join(2966653..2967445,2967801..2968012,2970011..2970302, 2970396..2970481,2970558..2970649,2971890..2972239) /locus_tag="TCM_012430" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g31280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009536t1" /inference="similar to AA sequence:Phytozome:Glyma09g31280.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01737t00001; inference alignment:Newbler:10:TSA:cgbaB_g01737t00001" CDS join(2967110..2967445,2967801..2968012,2970011..2970302, 2970396..2970481,2970558..2970649,2971890..2972134) /locus_tag="TCM_012430" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG009536t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21095.1" /db_xref="Phytozome:Glyma09g31280.1" /db_xref="TAIR:AT1G15030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HWD9" /translation="MLGTGSQFGKVRGEDRFYIPVKARKNQNQKEKQKQKQEVVKEDN EKSSSNSSSSPAKNRASASDNNNKKKNLKETLVSSTVPCSEETGISRCNLERFLESTR PSVTAQYFSKKTMRGRRTCDVEFQPYFTLSDLWESFKEWSAYGAGVPLVLDGSDGVVQ YYVPYLSGIQLYGESMHANAKLRLSGEESDGDYYRDSSSDGSSDYEIDKGIKFSREQR SLFNLTNDIHFGVSSLSISDENSTLHEGFFSDDSEAGNSRDRLLFEFFEHDTPYSREP LADKIFDLACEYPGLKTLRSCDLLPISWISVAWYPIYRIPTGPTLKDLDACFLTYHSL CTPIEGSGSGQTPFVVYPDKADGIPQISLPVFGMASYKFKGSMWTQNGVSECQHANFL MQAAENWLRLHQVNHPDFQFFASHGMYL" CDS join(2967110..2967445,2967801..2968012,2970011..2970302, 2970396..2970481,2971890..2971932) /locus_tag="TCM_012430" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG009536t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21096.1" /db_xref="Phytozome:Glyma09g31280.1" /db_xref="TAIR:AT4G16100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HWD9" /translation="MLGTGSQFGKVRGEDRFYIPVKARKNQNQKEKQKQKQEVVKEDN EKSSSNSSSSPAKNRASASDNNNKKKNLKETLVSSTVPCSEETGISRCNLERFLESTR PSVTAQYFSKKTMRGRRTCDVEFQPYFTLSDLWESFKEWSAYGAGVPLVLDGSDGVVQ YYVPYLSGIQLYGESMHANAKLRLSGEESDGDYYRDSSSDGSSDYEIDKGIKFSREQR SLFNLTNDIHFGVSSLSISDENSTLHEGFFSDDSEAGNSRDRLLFEFFEHDTPYSREP LADKIFDLACEYPGLKTLRSCDLLPISWISVAWQRKWPNTICSISR" gene complement(2973075..2976903) /locus_tag="TCM_012431" /note="dbxref CacaoGD:Thecc1EG012431" mRNA complement(join(2973075..2976071,2976416..2976903)) /locus_tag="TCM_012431" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0031s00490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031329t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s02080.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(2973106..2976063) /locus_tag="TCM_012431" /note="paralog of Thecc1EG031329t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY21097.1" /db_xref="Phytozome:POPTR_0019s02080.1" /db_xref="TAIR:AT4G27220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1L5" /translation="MELAVASIFEMMKCFGPPICKYLDNHRKLDEKVEHLRRKLNDLN IRKQDIESRKEAELRSKKLVKKEVEKWFVDVETMNAGMQALEEKLRIVSYFSRARLGK LVCRKIEEVNEIYERGRFPEGVAIDGPPTIGMTLQTTNLEGEIDIKELIWEYLMGNVV GMIGVCGMGGVGKTTIMKHINNQLLRESRFDKVIWVTVSKEFNVVKVQEDIGSALNHY LSNDELERATMLMDILKRKRFVLILDDVWNRISLRDVGIPEPTLQNGSKLVITSRSID VCLSMGCEILKVQPLSKQESFNLFVTHVGDDVLQLPALEEIVKLTVDQCGGLPLAIVT IAGSMKGVDDVREWRNALNELRECVKSVRGLDNEIFGRLMFSYDRLGDPKIQECFLYC SLYPEDYIIERNELVEKWIDEKLIDEYGSRQAMRDRGHSILNKLENNCLVEKVKDFFE KGVKMHDVLRDMALSIRSVGPRFMVKAGMLLRELPSENEWTQDLDKVSLMENSILGIP PHISPKCGFLSTLLLQQNHGFERIPEVFFEHMHGLRVLDLSYTSIQDLPNSISKLENL TTLVLRRCYRLRYVPSVAKLRALRKLDLFNTAIEEVPHGMEKLVNLTYLALHSGSLKE LPRGILPMLSHLQYLATTLNINGEEMTKLGKLETLTGSFPEVQDFQNYAKFIWGQWPT SYQLVVGSPWSAEHDDLTELFENPEEFHNGINLINCEIGREDLVLLPNDLHALAIKKC PNLLSLNTISLFHEANDLKICYISECEGIECALDLSLLSCNSIQNIAVLNLKGLCNLR QLVSGLAIESTSPATPAALAPPAIFSSLVTFELSNCSGMKKLFSREILRGFQNLEFLK VESCGKMEKIIAVEEDEGNGKGGGRSANITAFILPKLRRLVLWELPELKSISSAGVMI HADSFQYIWIVDCLKLKRISLSLALLENGQPSPPPFLEGIYVEPREWWKSVEWDDPNV MDVLSPFVACKED" mobile_element 2982074..2982330 /note="source:INTACT19F_F94_scaffold_1-int 14300 14512" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2982344..2983728) /note="source:INTACT1443F_F12_scaffold_9-int 9525 10943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2982620..2985085 /note="source:CACAO_M_S_E1490_F231_scaffold_1 205 2664" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2985910..3010849 /locus_tag="TCM_012433" /note="dbxref CacaoGD:Thecc1EG012433" mRNA join(2985910..2985961,3004545..3004873,3005279..3005608, 3005692..3005781,3005892..3005992,3006149..3006265, 3006370..3006451,3006540..3006607,3006695..3006754, 3006959..3007083,3007568..3007766,3007875..3007985, 3008081..3008173,3008274..3009233,3009328..3009650, 3009764..3010849) /locus_tag="TCM_012433" /product="ATP binding microtubule motor family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037463t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s05060.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1493t2" mobile_element complement(2985918..2985997) /note="source:scaffold_10_CACTA_0139 3979 4057" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2990021..2999494) /note="source:INTACT164_F159_scaffold_7-int 1 10484" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2999861..3001440) /note="source:INTACT164_F159_scaffold_7-int 1 1648" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(3004741..3004873,3005279..3005608,3005692..3005781, 3005892..3005992,3006149..3006265,3006370..3006451, 3006540..3006607,3006695..3006754,3006959..3007083, 3007568..3007766,3007875..3007985,3008081..3008173, 3008271..3009233,3009326..3009650,3009764..3010290) /locus_tag="TCM_012433" /product="ATP binding microtubule motor family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037463t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s05060.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1493t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1493t2" CDS join(3005371..3005608,3005692..3005781,3005892..3005992, 3006149..3006265,3006370..3006451,3006540..3006607, 3006695..3006754,3006959..3007083,3007568..3007766, 3007875..3007985,3008081..3008173,3008274..3009233, 3009328..3009650,3009764..3010091) /locus_tag="TCM_012433" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037463t1" /codon_start=1 /product="ATP binding microtubule motor family protein isoform 1" /protein_id="EOY21098.1" /db_xref="Phytozome:POPTR_0012s05060.1" /db_xref="TAIR:AT1G18370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LPQ5" /translation="MTVRTPGTPASKTDRTPVTTPGGPKSKEEKIVVTVRLRPLSKRE QLAKDQVAWDCVDEHTIVSKHPAQERTAQPTSFTFDKVFGPSSLTETVYEDGVKNVAL SSLMGINATIFAYGQTSSGKTYTMRGITEKAVNDIYQHILNTPERDFTIKISGLEIYN ENVRDLLNSESDRNLKLLDDPEKGTVVEKLVEETASNDQHLRHLISICEAQRQVGETA LNDTSSRSHQIIRLTIQSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREG CHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALS HFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPSREKD LKIQQMEMEIEELKRQRDLAQSQVDELRRKLQEDQQISNPLESSRPSVKKCLSYSGVL SPKLDGKELGRNDRTRKTMLRQSMRQSSTAPFTLMHEIRKLEHLQEQLGEEANRALEV LQKEVACHRLGNQDAAETIAKLQAEIREMRSVRSIPKEVEVGTVIAPNKSVSANLKEE ITRLHSQGSTIADLEEQLENVQKSIDKLVMSLPSNNQESNREATPKTKSQSKKKKLLP LASSNAANRQNFIRSPCSPLSTSRQILEPENEENRPPEDDDIVSKETLPESEKETPVK SEEGGDVSSKEGTPGYRRSSSVNMRKMQKMFQNAAEENVRSIRAYVTELKERVAKLQY QKQLLVCQVLELEANEAAGYNIEDDESAIEPEEPQVAWHVTFREQRQQIIELWDVCYV SIIHRTQFYLLFKGDPADQIYMEVELRRLNWLQQHFAELGNASPALVGDESSVSLSSS IRALKREREFLAKRLTSRLSVEERDALYIKWDVPLDGKQRKLQFINKLWTDPHDAKHI EESAQIVAKLVGFCEGGNMSKEMFELNFALPADKRPWVVGWNQISNLLNL" CDS join(3005371..3005608,3005692..3005781,3005892..3005992, 3006149..3006265,3006370..3006451,3006540..3006607, 3006695..3006754,3006959..3007083,3007568..3007766, 3007875..3007985,3008081..3008173,3008271..3009233, 3009326..3009370) /locus_tag="TCM_012433" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037463t1" /codon_start=1 /product="ATP binding microtubule motor family protein isoform 2" /protein_id="EOY21099.1" /db_xref="Phytozome:POPTR_0012s05060.1" /db_xref="TAIR:AT1G18370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LPQ5" /translation="MTVRTPGTPASKTDRTPVTTPGGPKSKEEKIVVTVRLRPLSKRE QLAKDQVAWDCVDEHTIVSKHPAQERTAQPTSFTFDKVFGPSSLTETVYEDGVKNVAL SSLMGINATIFAYGQTSSGKTYTMRGITEKAVNDIYQHILNTPERDFTIKISGLEIYN ENVRDLLNSESDRNLKLLDDPEKGTVVEKLVEETASNDQHLRHLISICEAQRQVGETA LNDTSSRSHQIIRLTIQSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREG CHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALS HFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPSREKD LKIQQMEMEIEELKRQRDLAQSQVDELRRKLQEDQQQISNPLESSRPSVKKCLSYSGV LSPKLDGKELGRNDRTRKTMLRQSMRQSSTAPFTLMHEIRKLEHLQEQLGEEANRALE VLQKEVACHRLGNQDAAETIAKLQAEIREMRSVRSIPKEVEVGTVIAPNKSVSANLKE EITRLHSQGSTIADLEEQLENVQKSIDKLVMSLPSNNQESNREATPKTKSQSKKKKLL PLASSNAANRQNFIRSPCSPLSTSRQILEPENEENRPPEDDDIVSKETLPESEKETPV KSEEGGDVSSKEGTPGYRRSSSVNMRKMQKMFQNAAEENVRSIRAYVTELKERVAKLQ YQKQLLVCQRCLSWKQMKQLDTI" gene 3010858..3012084 /locus_tag="TCM_012435" /note="dbxref CacaoGD:Thecc1EG012435" mRNA 3010858..3012084 /locus_tag="TCM_012435" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS 3011287..3011643 /locus_tag="TCM_012435" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /protein_id="EOY21100.1" /db_xref="TAIR:AT3G18280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTP3" /translation="MDMGIISKADQIAFVCEETEKFRERERERVKRRCCDNDPTLIFI KHSASATTCSIYDRSHMNKVNKLVTCDHDPNIIPITANLTAFTADIKTRYTTPELQYL INFSLSSSLKTLLFLD" mobile_element complement(3014849..3015812) /note="source:CACAO_on_E683_scaffold_9 1323 2302" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3016433..3016522) /note="source:CACAO_on_E683_scaffold_9 1241 1591" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3016523..3016867 /note="source:INTACT639F_F363_scaffold_5-int 8208 8573" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3019087..3019166) /note="source:INTACT648_F285_scaffold_10-int 5328 5415" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3019706..3024915) /locus_tag="TCM_012436" /note="dbxref CacaoGD:Thecc1EG012436" mRNA complement(join(3019706..3020075,3021103..3021175, 3021289..3021350,3021486..3021819,3022023..3022239, 3022408..3022518,3023704..3024305,3024539..3024915)) /locus_tag="TCM_012436" /product="L-Ala-D/L-Glu epimerase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019371t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s05040.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1491t1" CDS complement(join(3020075,3021103..3021175,3021289..3021350, 3021486..3021819,3022023..3022239,3022408..3022518, 3023704..3024305,3024539..3024596)) /locus_tag="TCM_012436" /note="paralog of Thecc1EG019371t2" /codon_start=1 /product="L-Ala-D/L-Glu epimerase" /protein_id="EOY21101.1" /db_xref="Phytozome:POPTR_0012s05040.1" /db_xref="TAIR:AT3G18270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2J6" /translation="MKNLIAFVKIHWVFDYVIRGQTNPYWNKNHRQWLWWLLFTSLSH SREPIKVLSQSKIRQQEMFSMGSLSFFQKAPLKPLKPHKPLNLQIPISCLCVKNSMEV PATASVTNFEFKDLMETFTVEVQKAENRPLNVPLIAPFTIASSRLDKVENVAIRIELK DGCVGWGEAPILPFVTAEDQPTAMAKAKEACEVLKSSSAMTLGAVLGQIAGVLPGHQF ASVRAGVEMALVDAVAKSIGIPLWRLFGGASNTITTDITIPIVSPAEAHALATKYQKQ GFKTLKLKVGKNLKADIKVLQAIRAAHPDCSFILDANEGYRPEEAIEVLARLHEMGVT PVLFEQPVHRDDWEGLGRVSHYAKSKYGVSVAADESCRSLVDVKKIVEEELADVVNIK LAKVGVLGALEIIELARASGLYLMIGGMVETRLAMGFAGHLAAGLGCFKFVDLDTPLL LSEDPVLEGYEVLGAVYKFTKSTGHGGFLYWENIA" gene 3024510..3027448 /locus_tag="TCM_012437" /note="dbxref CacaoGD:Thecc1EG012437" mRNA join(3024510..3024529,3025856..3026006,3026436..3026616, 3026711..3026852,3026952..3027021,3027101..3027448) /locus_tag="TCM_012437" /product="Reticulon family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005247t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s03930.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1456t2" mRNA join(3025854..3026006,3026436..3026616,3026711..3026777, 3027100..3027429) /locus_tag="TCM_012437" /product="Reticulon-like protein B9, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005247t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s03930.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1125t3_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1456t2" CDS join(3025904..3026006,3026436..3026616,3026711..3026852, 3026952..3027021,3027101..3027270) /locus_tag="TCM_012437" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005247t1" /codon_start=1 /product="Reticulon family protein, putative isoform 1" /protein_id="EOY21102.1" /db_xref="Phytozome:POPTR_0015s03930.1" /db_xref="TAIR:AT3G18260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJQ5" /translation="MPIYESSESDNETIPRVKLFGRERPMHSILGGGKVADVLLWRER NLSAALLIGVTAIWFLFEVVEYNFVTLLCHISITTMLVIFIWGMFADYFGCTRPKIPE LLSNEHAFREVVSAFHWRFNQFLSKFLHIAGGKDPVHFFLVIVSLYIISVIGSYFDFV NLLFIGFLCMETLPYLYTKFENEVDYHAGQMTRKASKLYRRFDSRVLTKIPRGPVKEK KHA" CDS join(3025904..3026006,3026436..3026616,3026711..3026777, 3027100..3027270) /locus_tag="TCM_012437" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005247t1" /codon_start=1 /product="Reticulon-like protein B9, putative isoform 2" /protein_id="EOY21103.1" /db_xref="Phytozome:POPTR_0015s03930.1" /db_xref="TAIR:AT3G18260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJQ5" /translation="MPIYESSESDNETIPRVKLFGRERPMHSILGGGKVADVLLWRER NLSAALLIGVTAIWFLFEVVEYNFVTLLCHISITTMLVIFIWGMFADYFGCTRPKIPE LLSNEHAFREVVSAFGFLCMETLPYLYTKFENEVDYHAGQMTRKASKLYRRFDSRVLT KIPRGPVKEKKHA" gene 3029083..3029560 /locus_tag="TCM_012438" /note="dbxref CacaoGD:Thecc1EG012438" mRNA 3029083..3029560 /locus_tag="TCM_012438" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 3029118..3029354 /locus_tag="TCM_012438" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21104.1" /translation="MVRELKIITENGDGIGGIGGACLVFWAALLTLSLISAIIFSCAD GVSKDKTSSGDTNFYGGGCAADCGGAGCGAACGG" gene complement(3030159..3033699) /locus_tag="TCM_012439" /note="dbxref CacaoGD:Thecc1EG012439" mRNA complement(join(3030159..3030411,3030486..3030585, 3031165..3031274,3032925..3033699)) /locus_tag="TCM_012439" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene17773" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17503t00001" CDS complement(join(3030362..3030411,3030486..3030585, 3031165..3031274,3032925..3033357)) /locus_tag="TCM_012439" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21105.1" /translation="MLIRKMESKFSLRDKEKVKNLDRKHNHPKASSGAYCSSCGSSKE HNSRCHESLIEFACSACFFCIFCPLSIVWCCAQMPCKIGWRTARYAINWACCGSDKRV FVEYSSFSDIDLDDLPSKSPNNSSYPFNSARSRTSHRTNDSRQIPPKGQYLTWTNDKD GLDLVWKILDRAFANPFMDQEAVALLERPFEAKEVKAGAFQIRPMKAPGIEAKPSHMR KDLNKTLITLNP" gene 3035428..3037545 /locus_tag="TCM_012440" /note="dbxref CacaoGD:Thecc1EG012440" mRNA join(3035428..3035599,3035677..3035917,3036076..3036364, 3036468..3036537,3036763..3037545) /locus_tag="TCM_012440" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012445t1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1473t2" mRNA join(3035428..3035599,3035677..3035917,3036076..3036364, 3036763..3037545) /locus_tag="TCM_012440" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012445t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:PASA:2:TSA:puevd3b012017t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1473t2" CDS join(3035461..3035599,3035677..3035917,3036076..3036364, 3036468..3036537,3036763..3036893) /locus_tag="TCM_012440" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012445t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21106.1" /translation="MGTQSNSKNMELQAKHPEPKSIIQTLVLKAKDLKSRSLTNILGG GTVAGLLLWKNAISSATVICIATEIWILSTIIVENWIAQALLRIIAFVLLNLVSLALV SVFTAFYLDKCVEEKINFCLNKVEGAIGSVIDQYRGELDFAGKVIGAFVETQGKSLTD TIKESIKNRLDEALWPLYESVLQGLAAIVKPNLPAIFHSKICQEFLQMLVMISEGSQK KTFYGVVASLQVISIMCIFFPPTTVLYIGYLCVATLPALCNKLKISTVLEENFETKED KISGNDESVPKRS" CDS join(3035461..3035599,3035677..3035917,3036076..3036364, 3036763..3036807) /locus_tag="TCM_012440" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012445t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21107.1" /translation="MGTQSNSKNMELQAKHPEPKSIIQTLVLKAKDLKSRSLTNILGG GTVAGLLLWKNAISSATVICIATEIWILSTIIVENWIAQALLRIIAFVLLNLVSLALV SVFTAFYLDKCVEEKINFCLNKVEGAIGSVIDQYRGELDFAGKVIGAFVETQGKSLTD TIKESIKNRLDEALWPLYESVLQGLAAIVKPNLPAIFHSKICQEFLQMLVMISEGSQK KTFYGDICAWRLCQHYATS" mobile_element 3038560..3039969 /note="source:CACAO_PIF_E62_scaffold_2 7095 8520" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3039970..3042153) /note="source:INTACT329_F199_scaffold_2-int 169 1893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3041745..3042208 /note="source:CACAO_M_E48452_F5_scaffold_6 13278 13743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3042152..3042619) /note="source:INTACT409F_F47_scaffold_4-int 16257 16736" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3042625..3042837 /note="source:scaffold_7_CACTA_0789 10931 11133" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3043006..3044202 /note="source:CACAO_Mutator_E592_scaffold_3 5957 7112" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3043943..3045599 /note="source:CACAO_PIF_E62_scaffold_2 9962 12009" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3045600..3046457 /note="source:CACAO_Mutator_E592_scaffold_3 8710 9542" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3046458..3048019 /note="source:CACAO_PIF_E62_scaffold_2 12010 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3047974..3048196 /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2244" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3048015..3048249 /note="source:CACAO_PIF_E62_scaffold_2 16126 16357" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3048225..3053436) /note="source:CACAO_Mutator_E1744_scaffold_8 648 5853" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3053437..3055993 /note="source:INTACT89_F140_scaffold_9-int 1 2638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3055994..3056696) /note="source:scaffold_5_CACTA_0586 15397 16106" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3056697..3070219 /note="source:INTACT89_F140_scaffold_9-int 2639 16592" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3066519..3077084 /locus_tag="TCM_012445" /note="dbxref CacaoGD:Thecc1EG012445" mRNA join(3066519..3066624,3068192..3068253,3071363..3071937, 3072023..3072088,3075482..3075704,3075782..3076022, 3076181..3076469,3076573..3076642,3076857..3077084) /locus_tag="TCM_012445" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012440t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03121t00002" mobile_element complement(3070220..3070835) /note="source:CACAO_PIF_E119_scaffold_3 6783 7397" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3070765..3070852) /note="source:CACAO_Mutator_E592_scaffold_3 7626 7709" /mobile_element_type="transposon:TIR/Mutator" CDS join(3071698..3071937,3072023..3072088,3075482..3075704, 3075782..3076022,3076181..3076469,3076573..3076642, 3076857..3076987) /locus_tag="TCM_012445" /note="paralog of Thecc1EG012440t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21108.1" /translation="MITIVELAKLYERMKVLTAGIQQHISNFMVENVWEFYGAREKLV KDGLQAYSGGRYSNICKGLQQFCITISADQLKTFSVVLTSLEVLAFICVFFRPTKILY LGLVRYLPIKLEALRSFIFVVNSSQRLAMGTQSNSENEESQADHPEPKSIIQTLVSKA KDPKSRSLTNILGGGTVAGLLLWENAISSATVICIATEIWVLSTIIVENWIAQALLRI IAFVLLNLVSLALASVFTAFYLDKCVEEKINFCLNKVEGAIGSVIDQYRGELDFAGKV IGAFVETQGKSLTDTIKKSIKNGLDGALWPLYESVLQGLAAIVKPNLPAIFHSKICQE FLQMLLMISEGSQKKTFYGVVASLQVISIMCICFPPTTVLYIGYLCVATLPALCNKLK ISTVLEKNFETKLDKISGNDESVPKSS" mobile_element complement(3073028..3073419) /note="source:CACAO_on_E18_scaffold_1 717 1114" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3073098..3074091 /note="source:CACAO_on_E683_scaffold_9 1323 2305" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 3078474..3080554 /locus_tag="TCM_012446" /note="dbxref CacaoGD:Thecc1EG012446" mRNA join(3078474..3078684,3079322..3079547,3079632..3079896, 3079982..3080051,3080145..3080554) /locus_tag="TCM_012446" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012445t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS join(3078621..3078684,3079322..3079547,3079632..3079896, 3079982..3080051,3080145..3080230) /locus_tag="TCM_012446" /note="paralog of Thecc1EG012445t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21109.1" /translation="MANDAENEKSIPDSQGHSDGPVTLLRRNILLYTMMMFTAIEILV FFTLITNSRIAKALLCIAAFMLLHRFNMILLTIFGSFQLDEFLQQFLSSHIDKRSISK CTEMITIVELAKLFERVKVLTAGIQQHISNFMVENVWEFYGAREKLVKDGLQAYSSGR YSNICKGLQQFCITISADQLKTFSVVLTSLEVLAFICVFFRPTKILYIGYIFLPTLLI WHEATSSYRKWRALAASK" gene 3081765..3084538 /locus_tag="TCM_012447" /note="dbxref CacaoGD:Thecc1EG012447" mRNA join(3081765..3081892,3083383..3083605,3083712..3083769, 3083856..3083925,3084017..3084113,3084368..3084538) /locus_tag="TCM_012447" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage" CDS join(3081862..3081892,3083383..3083605,3083712..3083769, 3083856..3083925,3084017..3084102) /locus_tag="TCM_012447" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21110.1" /translation="MSNHESPNPIARAGQLIKALLSTLMMFTATEILVFSILATDSRV ARSLLCVMALMLLHVFSMALLAILCFFEFGKPPTGIVSFRDLWGVLVIIALEHHLKIF CVVVASLEILAFLCVIFGTNLVLYLGYLCLATLPICIDVMNFYRKWRALMASN" gene complement(3085723..3087405) /locus_tag="TCM_012449" /note="dbxref CacaoGD:Thecc1EG012449" mRNA complement(join(3085723..3085958,3086610..3086835, 3087089..3087324)) /locus_tag="TCM_012449" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010174" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09758t00001" mRNA complement(join(3085961..3085977,3086610..3086835, 3087089..3087405)) /locus_tag="TCM_012449" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010174" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1889t1_C1; alternateUTRof:Thecc1EG012449t1; inference alignment:Newbler:10:TSA:cgbaP1_g09758t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1853t1" CDS complement(join(3086816..3086835,3087089..3087320)) /locus_tag="TCM_012449" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21111.1" /translation="MQKPFLFELNPTKPKEAAMKQALLRSVPFFACKFLLSSTKCNAF SSIPKRPLFAALTRSQLRFYSSGSKEDDDVSNEELKMRI" CDS complement(join(3086816..3086835,3087089..3087320)) /locus_tag="TCM_012449" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21112.1" /translation="MQKPFLFELNPTKPKEAAMKQALLRSVPFFACKFLLSSTKCNAF SSIPKRPLFAALTRSQLRFYSSGSKEDDDVSNEELKMRI" gene complement(3087470..3107312) /locus_tag="TCM_012451" /note="dbxref CacaoGD:Thecc1EG012451" mRNA complement(join(3087470..3088346,3089165..3089304, 3089783..3089889,3089976..3090091,3090561..3090628, 3090843..3090912,3091529..3091868,3093281..3093389, 3094702..3094892,3094978..3095183,3096955..3097006, 3099303..3099402,3099502..3099643,3100503..3100591, 3101584..3101899,3102053..3102828,3107126..3107312)) /locus_tag="TCM_012451" /product="Diphthamide synthesis DPH2 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12570.1" /inference="similar to AA sequence:Phytozome:GSVIVT01038127001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1637t2" CDS complement(join(3088096..3088346,3089165..3089304, 3089783..3089889,3089976..3090091,3090561..3090628, 3090843..3090912,3091529..3091868,3093281..3093389, 3094702..3094892,3094978..3095183,3096955..3097006, 3099303..3099402,3099502..3099643,3100503..3100591, 3101584..3101899,3102053..3102257)) /locus_tag="TCM_012451" /codon_start=1 /product="Diphthamide synthesis DPH2 family protein" /protein_id="EOY21113.1" /db_xref="Phytozome:GSVIVT01038127001" /db_xref="TAIR:AT3G59630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTF7" /translation="MLIRANLAILGLLALANLSHFLDACEPSSCEALTNINSPFRLKS DPLECGDVELVCENNRTILHDRDYVPINSSLYVDTSLCTNASFSPHPYVYALFSGYTL NATSFQESYTIQFQAPRPFWFRSPNVTNLSIFDIHRGFLMGYDVPWYYAPCAGRVAYA PPPTSCYKITLGDMFILLEYLYTWQMVFTHSILPRDSFEYYYDRVLIAIRTLLGVACL FAVVLIKFCRRHLSMDDTIEEFLQMQNNLMPIRRLVAIKLLEMSKSHRQDFINEVATI GRIYHVNVIRPIDRPSINKVLEILEGLNWARPSTQSPAQGSVFPLSLFLRIFLLRLAP RGKACHPAAMDLETNFEISRTAEFILSRNFTRVALQFPDDLLKHSTKVVTSLRNKLGS GNKVGLFVMADTAYGSCCVDEVGASHIDADCVIHYGHTCLSPTSTLPSFCVFGKASIS VFSCVEKLSSFFWTNCRPTVVLYGLEYAHAISQIKEALVEATPKAKVELQFADVMCSI INPLEDHRRSNGLLGHLGSCTSNSSGAETGSRYSLGGLIWDLPEGQKMEDYMLLWIGP DNSAFANVVLTFNGCEIVRYDAAEDQLVTDVSQQKRILKRRYYLVERAKDANMVGILV GTLGVAGYLHMIHQMKELIMGAGKKAYTLVMGRPNPAKLANFPECDVFIYVSCAQTAL LDSKEFLAPVITPFEALLAFNRGSQWTGTYVMEFRDLINSSPLEVKKQPEEARFSFLK GGYVEDFELHENGDEENEGSLALANATEKVLQLRDTNPGSLVKRVAKSGAEFFVTRSY HGLEMHANSSLPEPYLVGRSGKASGYKDEKIEHET" mobile_element complement(3097206..3098898) /note="source:CACAO_M_S_E64889_F3_scaffold_5 1 1693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3102467..3102625) /note="source:CACAO_Mutator_E592_scaffold_3 3883 4048" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3111723..3112081 /note="source:CACAO_Mutator_E592_scaffold_3 472 817" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3112119..3112918 /note="source:CACAO_Again_on_S_E199_scaffold_6 1 806" /mobile_element_type="transposon:TIR/hAT" mobile_element 3112917..3113241 /note="source:CACAO_Mutator_E592_scaffold_3 832 1158" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3113446..3113759 /note="source:MITE_CACTA_19 1 314" /mobile_element_type="transposon:TIR/MITE" mobile_element 3114397..3116123 /note="source:CACAO_Mutator_E592_scaffold_3 1284 3040" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3116671..3117137 /note="source:INTACT14_F108_scaffold_9-int 34 500" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3116837..3129635) /locus_tag="TCM_012454" /note="dbxref CacaoGD:Thecc1EG012454" mRNA complement(join(3116837..3117183,3125407..3126944, 3127590..3127619,3127710..3127813,3128887..3129635)) /locus_tag="TCM_012454" /product="PR5-like receptor kinase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038718001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012483t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s02040.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1515t1" mobile_element complement(3118177..3118629) /note="source:INTACT1608F_F65_scaffold_10-int 339 768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3118647..3119152 /note="source:CACAO_M_S_E66514_F257_scaffold_5 575 1081" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3119159..3121408) /note="source:INTACT566_F257_scaffold_7-int 2761 5009" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3121412..3123952) /note="source:INTACT566_F257_scaffold_7-int 1 2531" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(3125803..3126944,3127590..3127619, 3127710..3127813,3128887..3129530)) /locus_tag="TCM_012454" /note="paralog of Thecc1EG012483t1" /codon_start=1 /product="PR5-like receptor kinase" /protein_id="EOY21114.1" /db_xref="Phytozome:POPTR_0015s02040.1" /db_xref="TAIR:AT5G38280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B5H8" /translation="MLRAKLAILGLLALALSQLLDVVDAARRGTHDCKRSCGALNIRS PFRFKGDTPECGEYELVCEHNRTILDDVDYGRFYVLDIFYNHTIRLVDGSLNSDECSI LPKSFPCGYSFIYFLSCQVLINSPLYIDASPCANASFSPHLYALFSRKTPNATGFLEP CTIEVQAPRPFWFRSPNVTGLSIFDVHQKFLMGYDVPLRCVHFPDYRNKITLSYIFLW AKGISLDCLYKLRMFFTLGVPPVHFTQEFYTRIEDALFLITGVYIIIRTLLGVSCLIV VVLIKFRRRHLSTDDTIEEFLQMQNNLKPIKYSYSEIKKMTKCFKDKLGQGGYGSVFK GTLRSGRPIAVKLLEMSKSHGQDFINEVATIGRIHHVNVVQLIGFCVDGSKQALVYDF MPNGSLDKIIFSREKDTTLCWEKIFEIAIGVVRGIEYLHQGCEMQILHFDIKPHNILL DKNFIPKISDFGLAKLYAVDQSIVSLTAARGTLGYIAPELFYKNIGSISHKADVYSFG MLLMEMVGRRKNLNAFAEQSSQIYFPTWIYDRFEKGEDAELGDATESEKKIVRKMVIV AFWCIQMRPTDRPSISKVLEMLEGEVEVLELPPQPFEFSFGRSSKDFASCNREDEPTT STLDATTMSMEVPQM" gene 3129999..3149683 /locus_tag="TCM_012456" /note="dbxref CacaoGD:Thecc1EG012456" mRNA join(3129999..3130095,3137393..3138277,3139559..3139654, 3139771..3141215,3142150..3142717,3142992..3143580, 3149641..3149683) /locus_tag="TCM_012456" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012467t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s01990.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1504t1" mobile_element 3135514..3135568 /note="source:INTACT29_F113_scaffold_2-int 237 289" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3136997..3137067) /note="source:CACAO_Mutator_E592_scaffold_3 3632 3703" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3137415..3137484 /note="source:CACAO_Mutator_E592_scaffold_3 144 214" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3137544..3138296 /note="source:CACAO_Mutator_E592_scaffold_3 422 1165" /mobile_element_type="transposon:TIR/Mutator" CDS join(3137566..3138277,3139559..3139654,3139771..3140879) /locus_tag="TCM_012456" /note="paralog of Thecc1EG012467t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY21115.1" /db_xref="Phytozome:POPTR_0015s01990.1" /db_xref="TAIR:AT1G66920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HWF7" /translation="MLSTSLCKHCNATISFLFAFLLVLNVADAEAAHDICKVTKCNRH GPPVRFPFWLKDKQSPHCGFPHPGFELACTKNGETVLHLPWSVEMFVEDIDYKTQSIY LSDPEGCLNRQLPHLDLNFSASPFYGSFGQPDNYTLFNCPKDPREDYLYYGNCIGYIN GFQIRAASPSSMGNEYSLIKCQKVVDISAVPMELIDTPNLNLNWSKPICFSCEEEGKG CRLKNNTQDQTECYDIPKNGTIELMFEKHNMLIHFQHFTGHPYTKLKRIVAGVIPTSF LLALIVFALYKLYRIHKTKEESQLKIEEFLEDYRSLKPSRYAYADIKRITNQFKEKLG EGGYGTVFKGRLSNDVLVAVKVLNNFKGNGEEFINEVGSMSRIHHVNVARLVGFCADG YKRALVYEYLPNESLEKFIFSAKGESHFLGWDELQDIALGIAKGIEYLHQGCEQRILH FDIKPHNILLDHNFTPKISDFGLAKLCSKEQSAVFMTAARGTMGYIAPEVLSRNFGNV SYKSDVYSFGMLLLEMVGGRKNIDVTVENTSQVYFPEWVYNHLDKGEELGIRIEDERQ SLVARKLSIVGLWCIQWFPVDRPSMKAVIQMLEGEANSLTMPPNPFASTEHMKLGGSK YRKPVGAELAIIAE" mobile_element 3139536..3141302 /note="source:CACAO_Mutator_E592_scaffold_3 1511 3320" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3141938..3142038 /note="source:CACAO_Mutator_E592_scaffold_3 3627 3728" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3144868..3149732) /note="source:CACAO_M_S_E7105_F60_scaffold_2 4419 9283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3149729..3150322) /note="source:scaffold_9_CACTA_0927 6093 6688" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3150311..3157358) /note="source:CACAO_M_E12756_F7_scaffold_3 2 7052" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3153749..3159098 /locus_tag="TCM_012458" /note="dbxref CacaoGD:Thecc1EG012458" mRNA join(3153749..3153995,3154052..3154242,3157239..3157516, 3158233..3159098) /locus_tag="TCM_012458" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage" CDS join(3157300..3157516,3158233..3158576) /locus_tag="TCM_012458" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21116.1" /translation="MSIETSRRLSRTRREYQVVTVCIPSHRAQSMSSCTSPHIVHMGN ISIHLPHHHHHRQVHTHPSHARLHLSHNDANPSKILQPTRSSLPKVLLGAQRNNYFHF YFYLFIFFFSSFSLSRLFLSFFFSSFPSVDNTFLLSLLYFLFLSFPSFHSQTDNLSLC LLLHKPNSTSPCFLSQICSKTLCFSS" mobile_element complement(3159108..3159943) /note="source:INTACT563_F255_scaffold_10-int 16767 17621" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3159942..3162919 /note="source:INTACT597_F267_scaffold_2-int 9247 12256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3162905..3163064) /note="source:INTACT563_F255_scaffold_10-int 17209 17369" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3163043..3165671) /note="source:CACAO_M_E24389_F60_scaffold_4 1790 4423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3168164..3170015) /note="source:INTACT254_F60_scaffold_3-int 1 1810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3170016..3170073) /note="source:CACAO_M_S_E109853_F60_scaffold_9 21174 21231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3171789..3172386 /note="source:scaffold_2_CACTA_0260 3897 4514" /mobile_element_type="transposon:TIR/CACTA" gene complement(3172643..3173794) /locus_tag="TCM_012462" /note="dbxref CacaoGD:Thecc1EG012462" mRNA complement(3172643..3173794) /locus_tag="TCM_012462" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010301t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.93 coverage" gene complement(3172959..3181053) /locus_tag="TCM_012463" /note="dbxref CacaoGD:Thecc1EG012463" mRNA complement(join(3172959..3172991,3175227..3175867, 3179572..3179616,3179835..3180525,3180832..3180894, 3180984..3181053)) /locus_tag="TCM_012463" /product="H0502G05.11 protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043426t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.58 coverage" CDS complement(3172984..3173217) /locus_tag="TCM_012462" /note="paralog of Thecc1EG010301t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21117.1" /translation="MAFKDLSKACPKNDLPLPNIDTLVDATAGHEMFSFMDGFSRYNQ IRMALGDVKKTAFRTLSLRSLLYSHLDHHLADP" mobile_element complement(3174482..3176711) /note="source:scaffold_4_CACTA_0502 2146 4374" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(3175545..3175867,3179572..3179616, 3179835..3179991)) /locus_tag="TCM_012463" /note="paralog of Thecc1EG043426t1" /codon_start=1 /product="H0502G05.11 protein" /protein_id="EOY21118.1" /translation="MNGRTFKDAMIGEGRKVIREDGTKREVSGNLKITEMMVKTSIED KEGVKELRGGDGDNFGELSRSLKENVANVVNNNENGRNRESMTNPLLNTTNPSIVGDL VTVTPYINAQSFVIKEELEKLFDKKNKSLNFLEFDLKLPYLAKVAVKSYPKDYTSSNS NNSTARQMMLRNMS" mobile_element complement(3181550..3181639) /note="source:CACAO_Mutator_E592_scaffold_3 3626 3713" /mobile_element_type="transposon:TIR/Mutator" gene complement(3183518..3186564) /locus_tag="TCM_012465" /note="dbxref CacaoGD:Thecc1EG012465" mRNA complement(join(3183518..3184677,3185440..3185469, 3185560..3185666,3186273..3186564)) /locus_tag="TCM_012465" /product="PR5-like receptor kinase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038718001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012475t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038718001" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(join(3183752..3184677,3185440..3185469, 3185560..3185666,3186273..3186298)) /locus_tag="TCM_012465" /note="paralog of Thecc1EG012475t1" /codon_start=1 /product="PR5-like receptor kinase" /protein_id="EOY21119.1" /db_xref="Phytozome:GSVIVT01038718001" /db_xref="TAIR:AT5G38280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B5H8" /translation="MKRRRKASELWRLKFIISNYLESFRIFFTYGIPSRDTTAVYYTS RTQVYFLIITVFKGTLQSGYLVAIKLLEMSKSHGQDFINEVATIGRIHHVNMVQLIGF CVEGSKHALIYDFMPNGSLDKIIFSREKNITLCWEKIFEIAIGVARGIEYLHQGCEMQ ILHFDIKPHNILLDENFIPKISDFGLAKLYAVDHGNVSLTAARGTLGYIAPELFYKNI GSISHKADVYSFGMLLLEMVGKRRNLNALAEQSSQVYFPSWIYDRFDKGEDVNLEDAT ESERKIVRKMVMVAFGCIQIKPIDRPSISKVLEMLEGEVELLEVPPKPFLLSLEGSSK DFASSNWEEESTTSTLDATAKSIEVPQM" mobile_element complement(3186900..3187093) /note="source:scaffold_5_CACTA_0614 3139 3371" /mobile_element_type="transposon:TIR/CACTA" gene complement(3187621..3188224) /locus_tag="TCM_012466" /note="dbxref CacaoGD:Thecc1EG012466" mRNA complement(3187621..3188224) /locus_tag="TCM_012466" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012483t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage" CDS complement(3187834..3188151) /locus_tag="TCM_012466" /note="paralog of Thecc1EG012483t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21120.1" /translation="MYFISCKVAINSSLYVDASPCANASFSPHPYFYAVDGREIRNAI DLHESCIIEVQVPRPFQLRSSSISGLSIFDIHQMFLKGYDVPWKCAPASFTSSNEITL GKM" mobile_element 3188481..3188892 /note="source:CACAO_Mutator_E592_scaffold_3 2 404" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3188742..3189409) /note="source:CACAO_Mutator_E592_scaffold_3 3376 4031" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3189475..3189515) /note="source:CACAO_Mutator_E592_scaffold_3 3395 3435" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3190250..3190713 /note="source:scaffold_9_CACTA_0942 4929 5362" /mobile_element_type="transposon:TIR/CACTA" gene 3190600..3193621 /locus_tag="TCM_012467" /note="dbxref CacaoGD:Thecc1EG012467" mRNA join(3190600..3190960,3191051..3191525,3192203..3192235, 3192357..3193621) /locus_tag="TCM_012467" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30169.m006504.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012456t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s02010.2" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1409t1" mobile_element 3190767..3191544 /note="source:CACAO_Mutator_E592_scaffold_3 403 1165" /mobile_element_type="transposon:TIR/Mutator" CDS join(3190808..3190960,3191051..3191525,3192203..3192235, 3192357..3193465) /locus_tag="TCM_012467" /note="paralog of Thecc1EG012456t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY21121.1" /db_xref="Phytozome:POPTR_0015s02010.2" /db_xref="TAIR:AT1G66920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HWE9" /translation="MDDNSPSLCRSATTVTTMSFLFAFLLLLNVAEVGATQEICKVSK CERDGPPQTVLHLPPSVKMFVEDIDYKTQRINRSYPVDCAMIPYFSINFSASPFRQSI EPDNYTMFNCSENPTEDSFFFYEKTCLDFIYDFNISAIPSDSWEAYNLLNCSKVVDIS VKPAGPISRENLYLEWSKPMCARCEAEGKGCRVKNNTEDQTECYDIPYKGHPTKLKRI LAGVIPASFVLALIVVALYKLYHLEKTKKESQLKVEEFLEDYKSLKPSRYSYADIKRI TNQFKEKLGEGGYGTVFKGRLSNDVLVAVKVLNNFKGNGEEFINEVGSMSRIHHVNVA RLVGFCADGYKRALVYEYLPNESLEKFIFSAKGESHFLGWDKLQDIALGIAKGIEYLH QGCEQRILHFDIKPHNILLDHNFTPKISDFGLAKLCSKEQSAVSMTAARGTMGYIAPE VLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNIDVTVENTSQVYFPEWVYNHLDEGEDL GIRIEDERQSMIARKLSIVGLWCIQWFPVDRPSMKVVIQMLEGEADSLTLPPNPFAST DYMKLGGSKYKNPVGTELAIIAE" mobile_element 3191770..3193937 /note="source:CACAO_Mutator_E592_scaffold_3 1160 3348" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3194122..3194472) /note="source:CACAO_M_E5867_F3_scaffold_2 1 362" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3194901..3195553 /note="source:CACAO_Mutator_E592_scaffold_3 3376 4030" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3195423..3195574) /note="source:CACAO_Mutator_E592_scaffold_3 238 404" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3195728..3195928) /note="source:CACAO_Mutator_E592_scaffold_3 3 221" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3196094..3196445) /note="source:CACAO_M_E58877_F5_scaffold_9 20403 20735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3196439..3196917) /note="source:CACAO_M_E52694_F25_scaffold_8 4521 4983" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3197151..3197975) /note="source:CACAO_M_E49539_F76_scaffold_7 4055 4892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3198849..3201397) /note="source:INTACT1427F_F390_scaffold_9-int 12495 15045" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3201588..3203677 /locus_tag="TCM_012470" /note="dbxref CacaoGD:Thecc1EG012470" mRNA 3201588..3203677 /locus_tag="TCM_012470" /product="Gag-pro-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032607t1" /inference="similar to AA sequence:Phytozome:Glyma09g22800.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00362t00003_G2" CDS 3202024..3202989 /locus_tag="TCM_012470" /note="paralog of Thecc1EG032607t1" /codon_start=1 /product="Gag-pro-like protein" /protein_id="EOY21122.1" /db_xref="Phytozome:Glyma09g22800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0E2V7" /translation="MGQLSKILELISTDKGKKAARSSGTPEDVQQTETNTDPVYPPGF TPPPARNASIPMPSVGQYPFFGMPIGPPSTYAQQRPIGGASPSDPISVPDLDDPKEQE KLKCGSVESKDNPDTHQKFDLFEERLRMVEGMGMYCSMDAIELCLVPDVVIPPKFKVP DFEKYDGTKCPVTHITMYCRRMAAYAHDDKLLIHCFQDSLTGAAAKWYVQLDRNRIHT WKDLARAFVAQYKHVTDMAPDRLSLQNMEKKTIESFKEYAQRWRNVASQVQPPLTEKE TTVIFVNTLRAPYYERLVGSATKNFADMVISGEMIETAIKQGKIE" mobile_element complement(3212060..3213442) /note="source:CACAO_M_E58877_F5_scaffold_9 17827 19185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3214249..3214391 /note="source:scaffold_2_CACTA_0281 681 805" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3214647..3215226) /note="source:CACAO_Mutator_E592_scaffold_3 1737 2316" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3215303..3215851 /note="source:CACAO_Mutator_E592_scaffold_3 3376 3934" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3215852..3216163) /note="source:CACAO_Mutator_E592_scaffold_3 2 313" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3216273..3216470 /note="source:scaffold_7_CACTA_0795 2805 3018" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3216692..3216895 /note="source:CACAO_Mutator_E592_scaffold_3 3779 4010" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3217000..3217330 /note="source:scaffold_10_CACTA_0130 7927 8250" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3217347..3218575 /note="source:scaffold_10_CACTA_0130 8380 9605" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3218544..3218582 /note="source:scaffold_10_CACTA_0130 7877 7915" /mobile_element_type="transposon:TIR/CACTA" gene 3218550..3219648 /locus_tag="TCM_012474" /note="dbxref CacaoGD:Thecc1EG012474" mRNA 3218550..3219648 /locus_tag="TCM_012474" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g025630.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012483t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS 3218760..3219467 /locus_tag="TCM_012474" /note="paralog of Thecc1EG012483t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21123.1" /translation="MSIRAKLAILGLLALAHLSHFLDAVNAARRVTTPCKPSSCGAFT NISSPFILEGDPLECGDYELICENNRTILHNVDYGNGSFYVQEIFYNDGPTIRLVDGS LKSDECSILPKSFPCGSDYMYFISCKVAINSSLYVDASPCANASFSPHPYFYAVDGRE ISNAIDLHESCIIEVQVPRPFQLQSSSITGLSIFDIHQMFLMGYDVPDYCAPRSSLGT VTVNGTPPLYKIILGKM" gene 3219449..3222663 /locus_tag="TCM_012475" /note="dbxref CacaoGD:Thecc1EG012475" mRNA join(3219449..3219463,3220542..3220660,3220752..3220781, 3221493..3222663) /locus_tag="TCM_012475" /product="PR5-like receptor kinase" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g025630.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012483t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038718001" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1604t4" CDS join(3220591..3220660,3220752..3220781,3221493..3222634) /locus_tag="TCM_012475" /note="paralog of Thecc1EG012483t1" /codon_start=1 /product="PR5-like receptor kinase" /protein_id="EOY21124.1" /db_xref="Phytozome:GSVIVT01038718001" /db_xref="TAIR:AT5G38280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVI8" /translation="MFFTHGSLSRDRYDYYYYYYYYGRIPFALFIITGVLITIRTLLG VSCLIAAVLIKFRRRHLSMDDTIEEFLQMQNNLMPIRYSYSEVKKMTKCFKDKLGQGG YGSVFKGTLRSGRLVAIKLLNMSKSHGQDFINEVATIGRIHHVNVVQLIGFCVEGSKQ ALVYDFMPNGSLDKIIFSGERDTTLCWEKIFEIAIGVARGIEYLHQGCQMQILHFDIK PHNILLDENFTPKISDFGLAKLYAVDHSIVSLTAARGTLGYIAPELFYKNIGSISHKV DVYSFGMLLMEMVGKRRNLNAFAEQSSQIYFPSWIYDRFDKEEDIELGDVTENEKKTV RKMVITAFWCIQIKPTDRPSISKVLEMLEGEVEPLELPAKPFLLSLDSSSKDFASKNL EKEPTTSTLDATVKGMEVPQM" mobile_element 3223131..3225593 /note="source:CACAO_on_E390_scaffold_1 2715 5170" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3225622..3225710 /note="source:scaffold_9_CACTA_0946 17943 18020" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3226024..3246645 /note="source:CACAO_Mutator_E592_scaffold_3 1 20622" /mobile_element_type="transposon:TIR/Mutator" gene 3247687..3252152 /locus_tag="TCM_012483" /note="dbxref CacaoGD:Thecc1EG012483" mRNA join(3247687..3248933,3249971..3250077,3250169..3250198, 3250814..3252152) /locus_tag="TCM_012483" /product="PR5-like receptor kinase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038718001.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012454t1" /inference="similar to AA sequence:ricco:30169.m006512" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1604t4" CDS join(3248272..3248933,3249971..3250077,3250169..3250198, 3250814..3251955) /locus_tag="TCM_012483" /note="dbxref ricco:30169.m006512; paralog of Thecc1EG012454t1" /codon_start=1 /product="PR5-like receptor kinase" /protein_id="EOY21125.1" /db_xref="TAIR:AT5G38280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B5H8" /translation="MLIRAKLAILGLLALALSQLLDAVDAARRGTHDCKRSCGALNIR SPFRFKGDTPECGEYELVCEHNRTILDDFYYERFYVLDIFYNHTIRLVDGSLNSDECS ILPKSFLCSFHSDYMYFISCKVAINSSLYVDASPCANASFSSHPYFYAVDGREIRNAI DLHESCIIEVRVPRPFQLRSSSISGLSIFDIHQMFLKGFDVPWNCAPAYFTSSNESTL GKILSQLMDIISEYLDALRMFFTHGYQSPDRYDYYYYGRIPFAFFIITGVYIIIRTLL GVSCLIAAVLIKFRRRHLSMDDNIEEFLQMQNNLMPIRYSYSKVQKMTKCFKDKLGQG GYGSVFKGTLRSGRLVAKKLLNMSKSHGQDFINEVATIGRIHHVNVVQLIGFCVEGSK QALVYDFMPNGSLDKIIFSEERDTTLCWEKIFEIAIGVARGIEYLHQGCQMQILHFDI KPHNILLDENFTPKISDFGLAKLYAVDHSIASLTAARGTLGYIAPELFYKNIGSISHK VDVYSFGMLLMEMVGKRRNLNAFAEQSSQIYFPSWIYDRFDKEEDIELGDVTENEKKT VRKMVITAFWCIQIKPTDRPSISKVLEMLEGEVELLELPPKPFLLSLDSSSKDFASNN LEEEPTTSTLDATVEGMEVPPM" gene complement(3252782..3257604) /locus_tag="TCM_012484" /note="dbxref CacaoGD:Thecc1EG012484" mRNA complement(join(3252782..3256971,3257195..3257604)) /locus_tag="TCM_012484" /product="NF-X-like 1" /inference="alignment:exonerate-protein:2:frave:gene09346" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017029t4" /inference="similar to AA sequence:Phytozome:POPTR_0012s04070.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc510t1" CDS complement(3253624..3256872) /locus_tag="TCM_012484" /note="paralog of Thecc1EG017029t4" /codon_start=1 /product="NF-X-like 1" /protein_id="EOY21126.1" /db_xref="Phytozome:POPTR_0012s04070.1" /db_xref="TAIR:AT1G10170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY59" /translation="MSFQGRNRSRNPSQSTRQEWVAGGYSSTATTVVSNSAATFNSTP NVSHTSTQNDNRYRKIGRPTNHRRDREKERNENHVAVKKEMDPNLPQLVQEIQDKLIK STVECMICYDTVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSVDLVVEKNQGFNWRCP GCQSVQLTSSKEIRYVCFCGKRTDPPSDLYLTPHSCGEPCGKPLEKVLGLGAGVMKDE LCPHVCVLQCHPGPCPPCKAFSPPRLCPCGKKVITTRCSDRKPVLTCGQRCDKLLECG RHRCELICHVGPCDPCQILINAPCFCRKKVEFVICGDMAVKGEVKAEDGIFSCSSTCG EKLRCGNHNCAEICHPGPCGDCELMPSKIKSCYCGKRSLQEQRQSCLDPIPTCSEVCA KFLPCRVHQCDQVCHSGDCPPCSVLVTQKCRCGSTSRRVECYKTTLENERFTCDKPCG HKKNCGRHRCSERCCPLSNSNNLPSGDWDPHFCHMACGKKLRCGHHSCESLCHSGHCP PCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHSSSHSCHFGDCPPC SVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHLAPCDISSGSE PGFRTSCGQTCGAPRRDCRHTCTAPCHPSAPCPDVRCDSRVTITCSCGRITASVPCDA GGSTSSFNADTVYEASIIQKLPVPLQPVDSTGKKIPLGQRKLMCDDECAKLDRKRVLA DAFDITSPNLDALHFGENSVTSELLSDLYRRDAKWVLAIEERCKFLVLGKSRGTATGL KIHVFCPMLKDKRDAVRIIAERWKLAVSAAGWEPKRFIVVHVTPKSKPPPRIIGVKGA TGVGGLHPPVFDPLVDMDPRLVVSFLDLPREADISALVLRFGGECELVWLNDKNALAV FSDPARASTAMRRLDHGSVYYGAVIFVQSAGTSVASTANNAWGGAGASSALKGNPWKK AVVQELGWREDSWGSEESYGGTSDPGSVWKAKETPIASSINRWSVLDSERGLSSFSRT VQTEDPSKLAGVLSNSGMDSNTANSNSAGLPGGGFNEPEPSEVVDDWEKAYE" gene 3257579..3264600 /locus_tag="TCM_012485" /note="dbxref CacaoGD:Thecc1EG012485" mRNA join(3257579..3257664,3259568..3260682,3262024..3262176, 3263592..3263690,3263827..3263982,3264063..3264168, 3264238..3264259,3264373..3264563) /locus_tag="TCM_012485" /product="RING/U-box superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010197" /inference="similar to AA sequence:ricco:29747.m001086" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc573t10" mRNA join(3259945..3260682,3262024..3262176,3263592..3263690, 3263827..3263982,3264063..3264259,3264373..3264600) /locus_tag="TCM_012485" /product="RING/U-box superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010197" /inference="similar to AA sequence:ricco:29747.m001086" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc573t10; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc573t10" CDS join(3260011..3260682,3262024..3262176,3263592..3263690, 3263827..3263982,3264063..3264168,3264238..3264259, 3264373..3264457) /locus_tag="TCM_012485" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29747.m001086" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 1" /protein_id="EOY21127.1" /db_xref="TAIR:AT1G73760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTP6" /translation="MPFLTENSASASSSTIAEHLKLRRPPRNQINITETDPNPVPDIP SVVQSARSKSSISSLFLSTFSSTNNETTTTTLHPSTNTKKKANPFSQSTLRGLGCTAS ASQQVSVPAMIRTSADWEAKKVKKKKKTQQQEQEKKKKKQKKKKSGKLVGNENSSNKV HHQQGVVLNEGSGNNISCGVIQDVWCGPGIGFSADAVGSVDCVVARRNVPARGKIDVE KVNHRERSCIARRTVNPETLSFLDSDSALISAHPEPDFFGARYYRHVRHPSPEGLAEI MMLQNNLLMGGRLDSHDRFSDWRLDIDSMSYEQLLELGDKIGYVNTGLKEDEISRCLR KIKGSIMNELPPNLHTHVDKKCSICQEEYEADEEMGKLYCGHSFHIQCIKQWLVQKNT CPVYFAPNTKRIKSMGLWDMDRRIVATSLLFLKSIYYL" CDS join(3260011..3260682,3262024..3262176,3263592..3263690, 3263827..3263982,3264063..3264197) /locus_tag="TCM_012485" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29747.m001086" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 2" /protein_id="EOY21128.1" /db_xref="TAIR:AT1G73760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTP6" /translation="MPFLTENSASASSSTIAEHLKLRRPPRNQINITETDPNPVPDIP SVVQSARSKSSISSLFLSTFSSTNNETTTTTLHPSTNTKKKANPFSQSTLRGLGCTAS ASQQVSVPAMIRTSADWEAKKVKKKKKTQQQEQEKKKKKQKKKKSGKLVGNENSSNKV HHQQGVVLNEGSGNNISCGVIQDVWCGPGIGFSADAVGSVDCVVARRNVPARGKIDVE KVNHRERSCIARRTVNPETLSFLDSDSALISAHPEPDFFGARYYRHVRHPSPEGLAEI MMLQNNLLMGGRLDSHDRFSDWRLDIDSMSYEQLLELGDKIGYVNTGLKEDEISRCLR KIKGSIMNELPPNLHTHVDKKCSICQEEYEADEEMGKLYCGHSFHIQCIKQWLVQKNT CPVCKTEAATRC" mobile_element 3264862..3264941 /note="source:scaffold_5_CACTA_0610 5149 5229" /mobile_element_type="transposon:TIR/CACTA" gene complement(3265129..3271762) /locus_tag="TCM_012486" /note="dbxref CacaoGD:Thecc1EG012486" mRNA complement(join(3265129..3265853,3265970..3266070, 3266168..3266338,3266886..3267060,3267171..3267271, 3268526..3268595,3268736..3269179,3269819..3270329, 3271625..3271762)) /locus_tag="TCM_012486" /product="Catalytic, putative" /inference="alignment:exonerate- protein:2:ricco:29747.m001079" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009464t1" /inference="similar to AA sequence:ricco:29747.m001079" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1643t2" CDS complement(join(3265794..3265853,3265970..3266070, 3266168..3266338,3266886..3267060,3267171..3267271, 3268526..3268595,3268736..3269179,3269819..3270178)) /locus_tag="TCM_012486" /note="dbxref ricco:29747.m001079; paralog of Thecc1EG009464t1" /codon_start=1 /product="Catalytic, putative" /protein_id="EOY21129.1" /db_xref="TAIR:AT1G15060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SFW5" /translation="MVLVQFQSDFRFAATLLSFNPSRSDPTPRFPCSFRRPTRIRGWS PVTKAAFKRNVEKKNEKKEPNICTADELHYVEVEKSEWRVALWRYLPSPEAPSRNHPL MLLSGVGTNAIAYDLSPESSFARFMSGQGYDTWILELRGAGLSAQGVDFGQVKDPLNA MSQRKDFYVKDGKYGTLANTAYGSFSMKRSFSGFSETGKSFAFADQIGDFIQKLVNIM EEGERSPAARIFYMQDRVSTALKDVQKQLDLIVKYDWDFDHYLEEDVPAAMEYIKTKS KPKDGKLFAVGHSMGGFEGRDSGLASVTALASSLDYMSSKSSLKLLLPLADPLQVLNI PVIPIGPLIAAAYPFATRPPYILSWLNSQISASDMMHPKLFEKLVMENFETVPAKLLL QLATAIQEGGLRDRSGTFFYKNHLGKSNVPILAIAGDQDLICPPEAVYETVKLIPEPL VTYKVFGEPGGPHYAHYDIVGGRLAIDLVYPCIIEFLNRHDEA" gene complement(3271985..3277762) /locus_tag="TCM_012487" /note="dbxref CacaoGD:Thecc1EG012487" mRNA complement(join(3271985..3272809,3273919..3274054, 3275312..3275420,3276176..3276250,3276600..3277466, 3277542..3277762)) /locus_tag="TCM_012487" /product="UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04980.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04980.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04922t00001" CDS complement(join(3272682..3272809,3273919..3274054, 3275312..3275420,3276176..3276250,3276600..3277466, 3277542..3277636)) /locus_tag="TCM_012487" /codon_start=1 /product="UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, putative" /protein_id="EOY21130.1" /db_xref="Phytozome:POPTR_0012s04980.1" /db_xref="TAIR:AT1G73740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2J0" /translation="MATKTHFLLSTPPKPPYLPLYPSSSSLPSKPRSFSISFCLSINQ SRNDQTASSSSTASKAPERVHVAFAAGGTGGHIYPAVAIADELKLVNPTCKVLFLGCP DSMESTAIPSAHFEFKSIPAVQLARPFSSPQNLFLPYRLIKSIIKSYTLLSKFEPHIV IGTGGYVSFPVCLAALLQRTKLVIQEQNSVPGIANWVLSFFADLVFVAFNSTVECFPR KEKCVVCGNPVRLSLKGLASKAVSRLHFFPELAKMEGSSEEVKVILVLGGSLGANAVN IALLNVYSQLLLEHKNWFIIWQTGVESFNEMESLVRNHRQLLLTPKIGYKDDVEKTMR RNMCYFMSHKDMFLHSMELAYAAADLIISRAGAMTCSEILATGKPSILIPSPNVAEGH QFRNASLMADVAGSMVITEDELDSTTLGTAISEILGDENLLTEMSERALKAAKLDASA EIAKHILSLVNLSAVKEKQ" gene complement(3279394..3282309) /locus_tag="TCM_012488" /note="dbxref CacaoGD:Thecc1EG012488" mRNA complement(join(3279394..3280490,3280848..3282309)) /locus_tag="TCM_012488" /product="Octicosapeptide/Phox/Bem1p family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29747.m001076" /inference="similar to AA sequence:Phytozome:POPTR_0012s04970.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(join(3279587..3280490,3280848..3282082)) /locus_tag="TCM_012488" /codon_start=1 /product="Octicosapeptide/Phox/Bem1p family protein, putative" /protein_id="EOY21131.1" /db_xref="Phytozome:POPTR_0012s04970.1" /db_xref="TAIR:AT2G01190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2I9" /translation="MKQLTIKPPALVSPFVLVHPPSTSQQASTPKQETPPPMDPPPLP TGPTAAAATSVHLSYPDSVESSPRSRTENSYDDPLPAVPGARLRLMCSFGGHIIPRPH DKTLCYVGGETRLVAVDRHCSLSAFCTRLSRALLNGRQFTLKYQLPNEDLDSLVSVAT DEDLENMIEEYDRLTASSASSATSSRIRYSFFNKPDTAASMGPLLNDAKSETWFVDAL NGSGLIPRGHSDSAAMETLLNLDGELEAQEVAEEQTKQVKSNNAVHHEVQCSLHDSPM VEKTSSFGSPSSSPSISNLPPIRVRVDQDGVAKVQDQRVGIEEQFAEISFATTIHKQD DGYGAAVSALPPHPVAVATAMITSAGGSSDNLNRILSDDERSDQGVPIGFRKPPLPLQ PVQQKACGAYNLPSPDSVASDSSIASANSLSKPMYYQDQAHIASRDSKAAVSPNTKAD TSIPNSQIQIHQVQDAYALAPQLDQQQQQAQQQFMQTSMHYIPHPTASPAPVSMSSYY PVYATPSQQHQLHHPADQQYPAVYVMPVTQVTQPQPYMSMQSSTGVMTLKSNVTDASI VAPSLPLTPPAPSIVAATTAYKEATPPMYPTNTAALAKPEMAATVYRTAVPSTPQLVQ VQQPYVGFSQMQHLPQSVAVTPAATTNYGYEYPNPSQDQMYYAQHQAPSLPPQYQTMT QAAAAAALADASLQQPTDGSNQQIRISQPL" gene complement(3283698..3284554) /locus_tag="TCM_012489" /note="dbxref CacaoGD:Thecc1EG012489" mRNA complement(3283698..3284554) /locus_tag="TCM_012489" /product="Mads box protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042972" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006325t1" /inference="similar to AA sequence:ricco:27866.m000233" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2612t1" CDS complement(3283807..3284439) /locus_tag="TCM_012489" /note="dbxref ricco:27866.m000233; paralog of Thecc1EG006325t1" /codon_start=1 /product="Mads box protein, putative" /protein_id="EOY21132.1" /db_xref="TAIR:AT5G60440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T2I3" /translation="MLNQQKMTNQCCGDGEEGKKKPAGKTKGRQRIEIKQLEKKSNLH VTFSKRRKGLFKKASELCILSGAKIGIIVLSPSPREKPFCFGHPDIDTVLDQYLSGNP AFDDQDYAALTDLPGFEEIDKQYEESLKELEKEKKRGKEIEQAKNVENNGGFWWDEAI DGMRVEELEAYMKAMEKLKKNLILRASALMMANVMETVVQADHSYGFGGS" mobile_element 3285219..3285283 /note="source:scaffold_5_CACTA_0612 5294 5360" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3286137..3286379) /note="source:CACAO_on_E373_scaffold_1 23 276" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3288377..3289197) /note="source:CACAO_MITE135_scaffold_9 5 831" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(3293177..3294544) /note="source:scaffold_9_CACTA_0946 378 1745" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3294619..3294923) /note="source:scaffold_9_CACTA_0946 1578 1868" /mobile_element_type="transposon:TIR/CACTA" gene 3296227..3299598 /locus_tag="TCM_012490" /note="dbxref CacaoGD:Thecc1EG012490" mRNA join(3296227..3296622,3296702..3296789,3296879..3296988, 3297163..3297256,3297645..3297833,3297909..3297968, 3298201..3298224,3298989..3299598) /locus_tag="TCM_012490" /product="Lipid phosphate phosphatase 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400054731" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009405t3" /inference="similar to AA sequence:Phytozome:GSVIVT01011828001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1610t2" CDS join(3296407..3296622,3296702..3296789,3296879..3296988, 3297163..3297256,3297645..3297833,3297909..3297968, 3298201..3298224,3298989..3299185) /locus_tag="TCM_012490" /note="paralog of Thecc1EG009405t3" /codon_start=1 /product="Lipid phosphate phosphatase 2" /protein_id="EOY21133.1" /db_xref="Phytozome:GSVIVT01011828001" /db_xref="TAIR:AT1G15080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI60" /translation="MSEILLGAHTLTSHGVKVARIHLYDWLILVFLVVIDGLLNFIEP FHRFVGEEMMTDLKFPFHKDTIPFWAVPFLAVLLPLVIFSIYYYFRKDVYDFHHAVLG LLFSVLVTGVITDSVKDAVGRPRPNFFWRCFPDGKAVFDRIIGDVVCHGNEKYIKEGY KSFPSGHTSWSFAGLSFLSWYMSGKIRVFDRRGHVAKLCVVFLPVLVAALVGVSRVDD YWHHWTDVFAGALIGSTMAAFCYLQFFPSPHNDEGFGFKSNIGWAPHAYFQMLADRHA AQSSGTRAISPHGRKHQTHIEILPMVSGSGSVDSSPDIEAMTPWKKTLI" mobile_element complement(3298076..3298137) /note="source:scaffold_5_CACTA_0615 2375 2443" /mobile_element_type="transposon:TIR/CACTA" gene 3300560..3301218 /locus_tag="TCM_012491" /note="dbxref CacaoGD:Thecc1EG012491" mRNA join(3300560..3300658,3300759..3301218) /locus_tag="TCM_012491" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4057t1" CDS 3300782..3301090 /locus_tag="TCM_012491" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21134.1" /translation="MKRYRRRKKYQRLKRVISAAHEDKESEATSMLEEYRRRGWKSKV MVPKNIASPVEPLRKWRDSYEEMMLCFAGHFTQLSNGNVYLFKRIPKANSHRLGNLDG " mobile_element complement(3302859..3302975) /note="source:CACAO_M_E4631_F369_scaffold_2 2625 2751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3302901..3305224) /note="source:CACAO_M_S_E4534_F4_scaffold_1 2500 4768" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3305472..3306980) /locus_tag="TCM_012492" /note="dbxref CacaoGD:Thecc1EG012492" mRNA complement(join(3305472..3305905,3306463..3306533, 3306747..3306980)) /locus_tag="TCM_012492" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(3305768..3305905,3306463..3306533, 3306747..3306885)) /locus_tag="TCM_012492" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21135.1" /translation="MVFLGESDYDINHVVDPVTFSAAINSPQSTIWMDAMKDETSSMA HNAYFDLKLHQMDVKTTFLNGNLEEEVRTRSDIAFAMGILGRYLTNPGLHHRVAAKKV MKYLQKTKDYMLV" gene 3308607..3309885 /locus_tag="TCM_012493" /note="dbxref CacaoGD:Thecc1EG012493" mRNA 3308607..3309885 /locus_tag="TCM_012493" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.84 coverage" CDS 3308615..3308887 /locus_tag="TCM_012493" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21136.1" /translation="MPFIVLFMSISRFLKILLIVRFGIIGKQNTLTFFFLEFFFLRDT LRNKVINTPNLIHNIIGSFDMGKLNRKGIKCMMNNEYVKKDNAMGS" mobile_element complement(3331895..3332419) /note="source:CACAO_M_E59164_F88_scaffold_9 5942 6466" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3332413..3333966 /note="source:CACAO_M_E71542_F85_scaffold_10 9769 11318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3333945..3340332) /note="source:CACAO_M_S_E122136_F76_scaffold_10 8696 15061" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3341020..3342544 /note="source:CACAO_M_S_E97714_F207_scaffold_8 1809 3338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3344206..3347523) /note="source:INTACT434_F213_scaffold_2-int 1678 5031" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3347509..3347522) /note="source:CACAO_M_E70891_F369_scaffold_10 12409 12422" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3347523..3350212 /note="source:CACAO_M_E12209_F369_scaffold_3 1 2690" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3350213..3351292 /note="source:INTACT165_F160_scaffold_9-int 3390 4467" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3353513..3361992) /locus_tag="TCM_012497" /note="dbxref CacaoGD:Thecc1EG012497" mRNA complement(join(3353513..3353775,3355453..3355762, 3358068..3358480,3358565..3358991,3361959..3361992)) /locus_tag="TCM_012497" /product="TMV resistance protein N" /inference="alignment:exonerate- protein:2:ricco:29841.m002919.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025419t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6260t1" CDS complement(join(3353737..3353775,3355453..3355762, 3358068..3358480,3358565..3358666)) /locus_tag="TCM_012497" /note="paralog of Thecc1EG025419t1" /codon_start=1 /product="TMV resistance protein N" /protein_id="EOY21137.1" /translation="MEQIESFFNMDLIESIELQIYNYLTDTKMFTTTQVFHDSGITSC FVFENEVPILFEYRSKGSEISFSLPQNLGGKVSWLNLCIVYSLLSDEIFEFLPSVHIV NETKRLKWSYLSSFIGIPEKTNNNTILWLIHWPVMDYQLENGDLVSCKFATSGFNVRE FGVTCVSETKIIAYDIYGPPEDRYNYHAHPAIGNKISFVVAQSPGQHIGYLNLVAILF FENNEIFDFLYRIEIVNETKDTKWIHYKRFIGIPEIKNNICWFSSWRFMGELEDGDQI ELGLGQESFID" gene complement(3358618..3361992) /locus_tag="TCM_012498" /note="dbxref CacaoGD:Thecc1EG012498" mRNA complement(join(3358618..3359437,3359522..3359857, 3359949..3361089,3361864..3361992)) /locus_tag="TCM_012498" /product="TMV resistance protein N, putative" /inference="alignment:exonerate- protein:2:ricco:29841.m002919.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025419t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s04750.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(join(3358667..3359437,3359522..3359857, 3359949..3361089,3361864..3361892)) /locus_tag="TCM_012498" /note="paralog of Thecc1EG025419t1" /codon_start=1 /product="TMV resistance protein N, putative" /protein_id="EOY21138.1" /db_xref="Phytozome:POPTR_0007s04750.1" /db_xref="TAIR:AT5G36930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RVC7" /translation="MSCHLCHVSMYESHFIQDIIKRVQNKLHCTTLYVPPYLVGIDFT VASINWWLGDGSNKVGIATICGIGGIGKTTIAKVVYNLNIQRFESSSFLANVREITQE HNGLIRLQRQLLSDILKGKANKIYNSNDGITKIKEVISRRRVLFVLDDVDDSEKITKI IGVQIPFHPGSKIIITSRQQCLLSDPFIRQMFDLEASSSYQDLCKVFEVKELTFNESL QLFKWYAFRQNDPIDSYMEYARSIVKHCGGLPLALQVLGSSLAGKSINVWKSALEKLK IIPDSKIQKILKISYDYLQDDHDKSLFLDIACVFVGKDKDYTTTIPDGCDYYTVIGIE NLINMSLLVVNEKNMLMMHQMIRDIGRNIIRQESPNLGKQSRLWHKDAFDALRKKIGT QTIKCLTMDLQRLLEEKYEKTIANHSKNPFLMSNEVDIEIDAFAKMQRLKLLQLDYVK LKGNYKDFLRSLIWLCWHGFPQEYLPTNLDISKLVVLEMCNSSLKCIWHDTKYFLPNL KILNLNHSDGLLKILNLSGLHSLERLMLKHCTKLIEVDQSIGKIKTLTILNLKGCKSL KKLPWTISLLDSLEELILSGCSTFEDVPKDLQKMKSLRVLSLDETAIYESNSWLSWLS LKRSKELGFFWTSLPCSLVKLSLESCRLFDDVMPTNLSYLPSLKSLNLSRNPIHSLPK SIICLTKLDELLLTCCNELQWLPKLPTSGLPMITSPSLYRITSLSCLLNLKRCIVFGC EKLIEVEGVFKLEPIENF" gene 3362087..3367613 /locus_tag="TCM_012499" /note="dbxref CacaoGD:Thecc1EG012499" mRNA join(3362087..3362106,3364880..3365056,3366461..3366810, 3367498..3367613) /locus_tag="TCM_012499" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage" CDS 3366574..3366804 /locus_tag="TCM_012499" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21139.1" /translation="MELVQGIKLSFVPKVMTKSHVCFIALCIIQKTMKVTLSGKVNFN CYPVPFVFCFIYIICVMRHGQIFPIETKIFIS" gene complement(3368376..3369358) /locus_tag="TCM_012501" /note="dbxref CacaoGD:Thecc1EG012501" mRNA complement(join(3368376..3369052,3369230..3369358)) /locus_tag="TCM_012501" /product="Leucine-rich repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:29841.m002919.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027222t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s04750.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5265t1" CDS complement(join(3368507..3369052,3369230..3369337)) /locus_tag="TCM_012501" /note="paralog of Thecc1EG027222t1" /codon_start=1 /product="Leucine-rich repeat-containing protein, putative" /protein_id="EOY21140.1" /db_xref="Phytozome:POPTR_0007s04750.1" /db_xref="TAIR:AT5G36930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S039" /translation="MPIQQANVISFLIIILILQSTLSSQRVQVQRKAVSKVPHQPIQI LLYSFLMSVSMVNHQESSSSISRYIYDVFLSFRGVDTRKNFTDHLYIALMQAGIHTYR DDNEIERGEKIRDEIERAIYESKASIIVFSKNYASSTWCLNELVKIMEHRKFSKHIVL PIFYDVNPSQVKKQTGSFAEAFARHEESFKSEMDMVQRWRAALREVADLGGMLLEDR" mobile_element complement(3369681..3370351) /note="source:scaffold_5_CACTA_0584 4214 4882" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3373629..3374662) /note="source:CACAO_M_S_E64023_F13_scaffold_5 7965 9001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3374663..3375857) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5810 7005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3378967..3379108 /note="source:INTACT19F_F94_scaffold_1-int 14774 14915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3380094..3380233 /note="source:INTACT19F_F94_scaffold_1-int 15742 15883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3383486..3386248 /note="source:CACAO_M_E12212_F87_scaffold_3 1 2763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3387704..3388293 /note="source:CACAO_M_E59215_F33_scaffold_9 1 589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3388294..3388592 /note="source:CACAO_M_E48145_F15_scaffold_6 1 299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3391398..3393768 /note="source:CACAO_M_E70949_F33_scaffold_10 586 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3394021..3394525 /note="source:scaffold_4_CACTA_0503 3237 3740" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3397065..3400017 /note="source:CACAO_M_E12215_F281_scaffold_3 1 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3399790..3400939 /locus_tag="TCM_012503" /note="dbxref CacaoGD:Thecc1EG012503" mRNA 3399790..3400939 /locus_tag="TCM_012503" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040558t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage" mobile_element 3400320..3405277 /note="source:INTACT561_F253_scaffold_5-int 477 4492" /mobile_element_type="retrotransposon:LTR/Copia" CDS 3400386..3400688 /locus_tag="TCM_012503" /note="paralog of Thecc1EG040558t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21141.1" /translation="MANIEKPKFYILEVSRNNYLSQCLDVEMHLQGQGLANAIIIDGN TNNKNKENALIFIRRHFHESLKTQYLSVRDSKILWTRLRERYDHTKTVILPQAQYD" gene 3406556..3407426 /locus_tag="TCM_012504" /note="dbxref CacaoGD:Thecc1EG012504" mRNA join(3406556..3406673,3407147..3407426) /locus_tag="TCM_012504" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5522t1" CDS join(3406583..3406673,3407147..3407259) /locus_tag="TCM_012504" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21142.1" /translation="MGRISSFVPRFIVFMLIILVLAMQSAPVSADLKLRKLGNKPLPS PPPTPAWARTKSHIPMIQPPPPF" mobile_element complement(3407412..3407796) /note="source:CACAO_on_E279_scaffold_9 8034 8432" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3407905..3407982) /note="source:CACAO_on_E279_scaffold_9 5 75" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(3412896..3413674) /locus_tag="TCM_012505" /note="dbxref CacaoGD:Thecc1EG012505" mRNA complement(3412896..3413674) /locus_tag="TCM_012505" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020504t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(3413230..3413556) /locus_tag="TCM_012505" /note="paralog of Thecc1EG020504t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21143.1" /translation="MFCGPLGVHNSNSAELMAIKMTLQLYSSSHWVGRKNLFIEPDSK VAIPWVSNSSMRHWNYWSALNEIDNYWRIIGEVELRHILREVNALADSLANFGVDREE MFMAWW" mobile_element complement(3415625..3416034) /note="source:INTACT481_F226_scaffold_1-int 3383 3791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3416030..3418395 /note="source:scaffold_3_CACTA_0384 2345 4714" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3416396..3419404) /note="source:INTACT481_F226_scaffold_1-int 1 3002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3422782..3424526) /note="source:scaffold_10_CACTA_0141 444 2174" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3422960..3427323 /note="source:CACAO_on_S_E176_scaffold_5 45 4427" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3426905..3427439) /note="source:CACAO_on_E193_scaffold_6 3875 4472" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3427365..3427465 /note="source:CACAO_Mutator_E1998_scaffold_9 5832 5922" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3427787..3428255 /note="source:CACAO_Mutator_E1149_scaffold_5 10117 10578" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3428242..3431676 /note="source:CACAO_Mutator_E1149_scaffold_5 10807 13719" /mobile_element_type="transposon:TIR/Mutator" gene complement(3432812..3439594) /locus_tag="TCM_012509" /note="dbxref CacaoGD:Thecc1EG012509" mRNA complement(join(3432812..3433216,3433409..3433556, 3439087..3439594)) /locus_tag="TCM_012509" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS complement(join(3433107..3433216,3433409..3433499)) /locus_tag="TCM_012509" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21144.1" /translation="MALHIFCRYLVLVMLITSVSTMRQVPINDAESNLRIVSHKEDPI RPPSPRPNKAPRQVAPGKPPQR" mobile_element 3436681..3438220 /note="source:CACAO_M_E34142_F67_scaffold_4 3703 5271" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3437875..3438317) /note="source:CACAO_Mutator_E1149_scaffold_5 5674 6108" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3439471..3439685 /note="source:CACAO_M_E34142_F67_scaffold_4 6100 6314" /mobile_element_type="retrotransposon:LTR/Copia" gene 3445419..3446068 /locus_tag="TCM_012510" /note="dbxref CacaoGD:Thecc1EG012510" mRNA join(3445419..3445532,3445815..3446068) /locus_tag="TCM_012510" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc5477t1" CDS join(3445442..3445532,3445815..3445894) /locus_tag="TCM_012510" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21145.1" /translation="MGLSSFFRPLIVFILIISVLAMQMTPISCADLKLRRLGSKPMPN PPPAPARNIPPL" mobile_element complement(3450943..3450972) /note="source:CACAO_M_E5892_F98_scaffold_2 2657 2693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3450973..3453801 /note="source:CACAO_M_E68730_F230_scaffold_9 1 2740" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3456423..3459219) /note="source:CACAO_M_E44592_F369_scaffold_6 1 2711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3460446..3460608) /note="source:CACAO_M_S_E99574_F14_scaffold_9 21796 21960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3465875..3466045 /note="source:CACAO_M_E72850_F230_scaffold_10 2342 2509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3470312..3479627 /note="source:CACAO_M_E12221_F121_scaffold_3 1 9316" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3482360..3485293 /note="source:CACAO_M_S_E17000_F33_scaffold_3 1 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3486231..3487748 /note="source:CACAO_M_S_E17001_F17_scaffold_3 1 1518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3488935..3492025 /note="source:CACAO_M_E12224_F51_scaffold_3 1 3091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3492580..3493846) /note="source:CACAO_M_E69923_F2_scaffold_9 4089 5347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3493847..3494636) /note="source:CACAO_M_S_E51565_F2_scaffold_4 11882 12664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3494630..3498508 /note="source:CACAO_M_S_E17777_F2_scaffold_3 8036 11913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3514431..3514910) /note="source:CACAO_M_S_E84261_F4_scaffold_6 4567 5043" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3517651..3518652) /note="source:scaffold_5_CACTA_0607 14783 15753" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3519465..3519587) /note="source:CACAO_M_E48538_F49_scaffold_6 12213 12350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3525435..3525491) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5680 5735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3528135..3530853 /note="source:CACAO_M_E70026_F10_scaffold_10 8 2745" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3530850..3531949 /note="source:INTACT803_F10_scaffold_6-int 2797 3937" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3535035..3541320) /locus_tag="TCM_012520" /note="dbxref CacaoGD:Thecc1EG012520" mRNA complement(join(3535035..3535490,3536654..3537216, 3540908..3541320)) /locus_tag="TCM_012520" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008351001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015546t1" /inference="similar to AA sequence:frave:gene09438" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1707t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8202t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc985t4" mRNA complement(join(3535386..3536168,3536654..3537216, 3537998..3538051,3538136..3538258,3540908..3541306)) /locus_tag="TCM_012520" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008351001" /inference="similar to AA sequence:Phytozome:GSVIVT01008351001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8202t1" CDS complement(join(3535421..3535490,3536654..3537216, 3540908..3541069)) /locus_tag="TCM_012520" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene09438; paralog of Thecc1EG015546t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21147.1" /db_xref="TAIR:AT3G18215.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SJ44" /translation="MEEDKLDYLLVPLGLLLLAAYHVWLLFTVLKHPTRTVIGLNAES RHQWVFAMMTDPLKNGVLAVQTIRNNIMASTLLATIAITLSSLISVFVSSSSDSGNAT LQIVYGNKSPLLSSIKYFSILLCFLVAFLCNVQSIRYYAHVSFLATLPSSRDNMETVE YVARNLNRGSYFWSLGLRAFYLSFPLLLWIFGPIPMFLCCCMMSFLLYFLDTTSNFTR DLHRRSFKEDMLKGVDLESTGPLSEKIPFGVSNLYCPLLHADTNFS" CDS complement(join(3536075..3536168,3536654..3537216, 3537998..3538051,3538136..3538258,3540908..3541069)) /locus_tag="TCM_012520" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21146.1" /db_xref="Phytozome:GSVIVT01008351001" /db_xref="TAIR:AT3G18215.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SJ44" /translation="MEEDKLDYLLVPLGLLLLAAYHVWLLFTVLKHPTRTVIGLNAES RHQWVFAMMTVKVAIGGLGWVTLGEVIWIVFGFRSSSVWVISNSGGSFQIQVILGETF KLFGFGSIWVQDPLKNGVLAVQTIRNNIMASTLLATIAITLSSLISVFVSSSSDSGNA TLQIVYGNKSPLLSSIKYFSILLCFLVAFLCNVQSIRYYAHVSFLATLPSSRDNMETV EYVARNLNRGSYFWSLGLRAFYLSFPLLLWIFGPIPMFLCCCMMSFLLYFLDTTSNFT RDLHRRSFKEDMLKGVDLESTGPLSCTSLCEVRLNLELEGSKGACLPLRQGLIGY" mobile_element 3543202..3543828 /note="source:MITE_Unknow_2_24 1 690" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(3543731..3543907) /note="source:scaffold_4_CACTA_0510 2034 2219" /mobile_element_type="transposon:TIR/CACTA" gene complement(3545620..3553574) /locus_tag="TCM_012521" /note="dbxref CacaoGD:Thecc1EG012521" mRNA complement(join(3545620..3545930,3546067..3546140, 3546758..3547726,3547936..3548100,3549141..3549470, 3549561..3549623,3549721..3549834,3551187..3551348, 3551451..3551513,3552093..3552200,3552378..3552455, 3552567..3553220,3553413..3553574)) /locus_tag="TCM_012521" /product="Poly(A) polymerase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29747.m001069" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037229t3" /inference="similar to AA sequence:Phytozome:POPTR_0015s04100.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b012095t1a2; alternateUTRof:Thecc1EG012521t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1762t2" mRNA complement(join(3545620..3545930,3546067..3546140, 3546758..3547726,3547936..3548100,3549141..3549470, 3549561..3549623,3549721..3549834,3551187..3551348, 3551451..3551513,3552093..3552200,3552378..3552455, 3552567..3553220,3553407..3553574)) /locus_tag="TCM_012521" /product="Poly(A) polymerase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29747.m001069" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037229t3" /inference="similar to AA sequence:Phytozome:POPTR_0015s04100.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1762t2" mRNA complement(join(3545620..3545930,3546067..3546140, 3546758..3547726,3547936..3548100,3549141..3549470, 3549561..3549623,3549721..3549834,3551187..3551348, 3551451..3551514,3552567..3552807)) /locus_tag="TCM_012521" /product="Poly(A) polymerase 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29747.m001069" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037229t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s04100.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc370t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1762t2" CDS complement(join(3545885..3545930,3546067..3546140, 3546758..3547726,3547936..3548100,3549141..3549470, 3549561..3549623,3549721..3549834,3551187..3551348, 3551451..3551513,3552093..3552200,3552378..3552455, 3552567..3552683)) /locus_tag="TCM_012521" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037229t3" /codon_start=1 /product="Poly(A) polymerase 1 isoform 1" /protein_id="EOY21148.1" /db_xref="Phytozome:POPTR_0015s04100.1" /db_xref="TAIR:AT1G17980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE77" /translation="MGSPGLGNRNNGQRLGITEPISLGGPTDYDVIKTRELEKYLQNV GLYESQEEAVGREEVLGRLDQTVKNWVKAISRAKGLNEQLVQEANAKIFTFGSYRLGV HGPGADIDTLCVGPRHATREEDFFGELYKMLSEMPEVSELHPVPDAHVPVMKFKFKGV SIDLLYAKLSLWVIPEDLDISQDSILQNTDEQTVRSLNGCRVTDQILRLVPNIQNFRT TLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNALPNMLVSRFFRVYTQWR WPNPVMLCAIEEGSLGLQVWDPRKNPKDRYHLMPIITPAYPCMNSSYNVSSSTLRIMT DEFQRGSEICEAMEANKADWDILFESYAFFEAYKNYLQIDISAENADDLRKWKGWVES RLRQLTLKIERHTYNMLQCHPHPGDFQDKSRPFHGSYFMGLQRKQGVPVNEGEQFDIR LTVEEFKHSVNMYTLWKPGMEIRVTHVKRRNIPSFVFPGGVRPSRPSKVTWDSMRVSD AKVSGHAGPDKSGEVKGVADGQDDGKKRKRVDDNGDAQLRSSKYITAVPSSSLEGRVG SPVSTVSSCSTKGDYSDATGLIETTREKAESNMTNGLINSRSLEELSSHNGEVDGSVG CNPPIKVSADASSCTEAENLAIEKIMSGPYGAHQAFPQELEELEDDLEFRNQVRSVEN TKSGPVESSMSDLAGAAPVTSSNGAGPSTSLHASGGIEELEPAELTAMISNRIPSAPV AQRKPLIRLNFTSLGKASEKSG" CDS complement(join(3545885..3545930,3546067..3546140, 3546758..3547726,3547936..3548100,3549141..3549470, 3549561..3549623,3549721..3549834,3551187..3551348, 3551451..3551513,3552093..3552200,3552378..3552455, 3552567..3552683)) /locus_tag="TCM_012521" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037229t3" /codon_start=1 /product="Poly(A) polymerase 1 isoform 1" /protein_id="EOY21149.1" /db_xref="Phytozome:POPTR_0015s04100.1" /db_xref="TAIR:AT1G17980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE77" /translation="MGSPGLGNRNNGQRLGITEPISLGGPTDYDVIKTRELEKYLQNV GLYESQEEAVGREEVLGRLDQTVKNWVKAISRAKGLNEQLVQEANAKIFTFGSYRLGV HGPGADIDTLCVGPRHATREEDFFGELYKMLSEMPEVSELHPVPDAHVPVMKFKFKGV SIDLLYAKLSLWVIPEDLDISQDSILQNTDEQTVRSLNGCRVTDQILRLVPNIQNFRT TLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNALPNMLVSRFFRVYTQWR WPNPVMLCAIEEGSLGLQVWDPRKNPKDRYHLMPIITPAYPCMNSSYNVSSSTLRIMT DEFQRGSEICEAMEANKADWDILFESYAFFEAYKNYLQIDISAENADDLRKWKGWVES RLRQLTLKIERHTYNMLQCHPHPGDFQDKSRPFHGSYFMGLQRKQGVPVNEGEQFDIR LTVEEFKHSVNMYTLWKPGMEIRVTHVKRRNIPSFVFPGGVRPSRPSKVTWDSMRVSD AKVSGHAGPDKSGEVKGVADGQDDGKKRKRVDDNGDAQLRSSKYITAVPSSSLEGRVG SPVSTVSSCSTKGDYSDATGLIETTREKAESNMTNGLINSRSLEELSSHNGEVDGSVG CNPPIKVSADASSCTEAENLAIEKIMSGPYGAHQAFPQELEELEDDLEFRNQVRSVEN TKSGPVESSMSDLAGAAPVTSSNGAGPSTSLHASGGIEELEPAELTAMISNRIPSAPV AQRKPLIRLNFTSLGKASEKSG" CDS complement(join(3545885..3545930,3546067..3546140, 3546758..3547726,3547936..3548100,3549141..3549470, 3549561..3549623,3549721..3549834,3551187..3551321)) /locus_tag="TCM_012521" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037229t2" /codon_start=1 /product="Poly(A) polymerase 1 isoform 3" /protein_id="EOY21150.1" /db_xref="Phytozome:POPTR_0015s04100.1" /db_xref="TAIR:AT1G17980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE77" /translation="MLSEMPEVSELHPVPDAHVPVMKFKFKGVSIDLLYAKLSLWVIP EDLDISQDSILQNTDEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVY SNVAGFLGGINWALLVARICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCAIEEGSL GLQVWDPRKNPKDRYHLMPIITPAYPCMNSSYNVSSSTLRIMTDEFQRGSEICEAMEA NKADWDILFESYAFFEAYKNYLQIDISAENADDLRKWKGWVESRLRQLTLKIERHTYN MLQCHPHPGDFQDKSRPFHGSYFMGLQRKQGVPVNEGEQFDIRLTVEEFKHSVNMYTL WKPGMEIRVTHVKRRNIPSFVFPGGVRPSRPSKVTWDSMRVSDAKVSGHAGPDKSGEV KGVADGQDDGKKRKRVDDNGDAQLRSSKYITAVPSSSLEGRVGSPVSTVSSCSTKGDY SDATGLIETTREKAESNMTNGLINSRSLEELSSHNGEVDGSVGCNPPIKVSADASSCT EAENLAIEKIMSGPYGAHQAFPQELEELEDDLEFRNQVRSVENTKSGPVESSMSDLAG AAPVTSSNGAGPSTSLHASGGIEELEPAELTAMISNRIPSAPVAQRKPLIRLNFTSLG KASEKSG" mobile_element complement(3553640..3553827) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17611 17791" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3553884..3554301) /note="source:scaffold_1_CACTA_0008 909 1349" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3553944..3554307) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17218 17579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3554563..3554636) /note="source:CACAO_on_S_E46_scaffold_2 1307 1379" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3555529..3555728) /note="source:scaffold_1_CACTA_0016 1408 1594" /mobile_element_type="transposon:TIR/CACTA" gene 3557451..3565425 /locus_tag="TCM_012523" /note="dbxref CacaoGD:Thecc1EG012523" mRNA join(3557451..3558153,3558270..3558378,3559646..3559682, 3559817..3559861,3561162..3561214,3561492..3561635, 3562943..3563026,3563237..3563326,3563458..3563505, 3564880..3565055,3565168..3565425) /locus_tag="TCM_012523" /product="Phosphatase 2C family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04120.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s04120.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2092t9" mRNA join(3557883..3558153,3558270..3558370,3559646..3559682, 3559817..3559861,3561162..3561214,3561492..3561635, 3562943..3563026,3563237..3563326,3563458..3563505, 3564880..3565173) /locus_tag="TCM_012523" /product="Phosphatase 2C family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04120.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s04120.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09997t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2092t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1551t2" CDS join(3557888..3558153,3558270..3558378,3559646..3559682, 3559817..3559861,3561162..3561214,3561492..3561635, 3562943..3563026,3563237..3563326,3563458..3563505, 3564880..3564990) /locus_tag="TCM_012523" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Phosphatase 2C family protein isoform 1" /protein_id="EOY21151.1" /db_xref="Phytozome:POPTR_0015s04120.1" /db_xref="TAIR:AT1G18030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMT1" /translation="MSETANSIISNSEPNLKRQPEVDDETSDSAAKKPKSETPVQEET EKEEVKEKSLEIEAAVAEDKGSRHTMEDAWVIMLDATLNSPGKLRCGHFAIYDGHGGR LAAEYAQNHLHANVVSSGLPRELLDVKAAKKAILDGFQKTDEALLQESSSGGWQDGAT AVCLWVIEKTVFVANIGDAKAVVARSADGSDKASPLKAIVLTREHKAIYPQERARIQK AGGTVSSNGRLQGRLEVSRAFGDRQFKKVGVVATPDIHSFDLTDREHFIILGCDGLWG VFGASDAVEFVQKLLKEGLPVTAVSRRLVREAVRERRCKDNCTAIIIFFRHK" CDS join(3558323..3558370,3559646..3559682,3559817..3559861, 3561162..3561214,3561492..3561635,3562943..3563026, 3563237..3563326,3563458..3563505,3564880..3564990) /locus_tag="TCM_012523" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Phosphatase 2C family protein isoform 2" /protein_id="EOY21152.1" /db_xref="Phytozome:POPTR_0015s04120.1" /db_xref="TAIR:AT1G18030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMT1" /translation="MLKIICTLMSFLLAYHLDVKAAKKAILDGFQKTDEALLQESSSG GWQDGATAVCLWVIEKTVFVANIGDAKAVVARSADGSDKASPLKAIVLTREHKAIYPQ ERARIQKAGGTVSSNGRLQGRLEVSRAFGDRQFKKVGVVATPDIHSFDLTDREHFIIL GCDGLWGVFGASDAVEFVQKLLKEGLPVTAVSRRLVREAVRERRCKDNCTAIIIFFRH K" mobile_element complement(3560325..3560358) /note="source:CACAO_PIF_E54_scaffold_3 8904 9122" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3560359..3560580) /note="source:scaffold_4_CACTA_0506 6834 7049" /mobile_element_type="transposon:TIR/CACTA" gene 3565551..3567055 /locus_tag="TCM_012524" /note="dbxref CacaoGD:Thecc1EG012524" mRNA join(3565551..3565708,3566524..3567055) /locus_tag="TCM_012524" /product="Uncharacterized protein" /note="quality class is strong-expresste, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage" CDS join(3565659..3565708,3566524..3566944) /locus_tag="TCM_012524" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21153.1" /translation="MDLNPVVKDYEISGNLWCRCPILIIQKNYIRDIRRAEEPKGVPS TEMPIGVPSVEVFKGVPSTEASKGVSNMEAPRGVPSTKAPRGVLSVKAPKSVLSTEAS KGISSVEVLKGVPSVKAPNGVPSPRTFQAQKRPRSITSTEAPNNKHGIAICTGK" mobile_element complement(3566701..3567715) /note="source:INTACT44_F119_scaffold_6-int 7943 8949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3567706..3571771) /note="source:INTACT44_F119_scaffold_6-int 2577 6585" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3571797..3572306) /note="source:INTACT44_F119_scaffold_6-int 1178 1645" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3572396..3572499 /note="source:scaffold_6_CACTA_0712 1365 1468" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3572428..3572529) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3161 3264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3573208..3574057) /note="source:INTACT44_F119_scaffold_6-int 1 864" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3574759..3577473 /locus_tag="TCM_012526" /note="dbxref CacaoGD:Thecc1EG012526" mRNA join(3574759..3575034,3575161..3575223,3575314..3575430, 3575518..3575761,3575934..3576135,3576207..3576342, 3576467..3577473) /locus_tag="TCM_012526" /product="Nodulin MtN21 /EamA-like transporter family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04130.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s04130.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS join(3574799..3575034,3575161..3575223,3575314..3575430, 3575518..3575761,3575934..3576135,3576207..3576342, 3576467..3576638) /locus_tag="TCM_012526" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein, putative" /protein_id="EOY21154.1" /db_xref="Phytozome:POPTR_0015s04130.1" /db_xref="TAIR:AT3G18200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6J163" /translation="MAEESIVCDKMKLLLALLALHSCFCRIPHCLQGCTKHWCQQSSL PSIQEHHCLAFVESFCLFLGKVSPYSLLEEKTVKKKDRPPLTFPLLVQFFLLALLGVT ANQGFYLLGLYYASPTFASAMQNSVPAITFVMASALRLEQINIAKRDGLAKVLGAIAS VGGATIITLYKGPLLLHQSNTTQGHSMEEDMSSKNMQNWTWGCIYLLGHCLSWAGWLV FQAPVLKKYPAKLTLTSFTCFFGLTQFLVIAAFVETDFHHWKIQSKEELFTILYAVIP SVSLLKDFHFFGSCGIWYCVFSSDMVHLQRRSSHCSHLPALAIMAFMILGDQLYSGSV IGAVFIMVGLYLVLWGKTEEKNVAKDEDADTLKKHLLNDPESRDVEEGAAESNTA" gene complement(3576919..3580136) /locus_tag="TCM_012527" /note="dbxref CacaoGD:Thecc1EG012527" mRNA complement(join(3576919..3577516,3578360..3580136)) /locus_tag="TCM_012527" /product="TCP-1/cpn60 chaperonin family protein" /inference="alignment:exonerate- protein:2:ricco:30110.m000716" /inference="similar to AA sequence:ricco:30110.m000716" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8231t1" CDS complement(join(3577453..3577516,3578360..3579957)) /locus_tag="TCM_012527" /note="dbxref ricco:30110.m000716" /codon_start=1 /product="TCP-1/cpn60 chaperonin family protein" /protein_id="EOY21155.1" /db_xref="TAIR:AT3G18190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Z9B2" /translation="MAAITAAQPRSSKTESYVDNKRKEDIRQANINAARAVADAVRTS LGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKMLVDLSKSQDAAAGDGTTTV VVIAGALLKQCLSLLSHGIHPTVISDSLHKASIKAVDVLTAMAVPLELSDRESLNKSA STSLNSKVVSQYSTLLAPLAVDSVLSVVDPEKPDLVDLRDIKIVKKLGGTVDDTELVK GLVFDKKASHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERN YILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKIMVVKDVERDEIEFITKT LNCLPISNIEHFRAEKLGHADLVEEVSLGDGKIVKVTEIKNMGRTTTVLVRGSNQLVI DEAERSLHDALCVVRCLVNKRFLIAGGGAPEIELSRQLGAWSKVLHGMEGYCVRSFAE ALEVIPYTLAENAGLNPIAIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPLLV STSAITLATECVRMILKIDDIVNVRHTPRKRTNRDLAIVSAVIAL" mobile_element complement(3580472..3580589) /note="source:scaffold_4_CACTA_0506 6981 7096" /mobile_element_type="transposon:TIR/CACTA" gene 3581327..3597061 /locus_tag="TCM_012528" /note="dbxref CacaoGD:Thecc1EG012528" mRNA join(3581327..3581869,3583626..3583780,3583887..3583974, 3584196..3584441,3584957..3585052,3585596..3585784, 3585893..3586052,3586136..3586266,3587717..3587890, 3588011..3588283,3589463..3589657,3590604..3590807, 3590901..3590970,3591073..3591221,3592636..3592944, 3593940..3593999,3594144..3594296,3594429..3594539, 3594748..3595556,3596410..3597061) /locus_tag="TCM_012528" /product="DEA(D/H)-box RNA helicase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009016t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s04160.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc834t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc834t2" mRNA join(3581327..3581869,3583626..3583780,3583887..3583974, 3584196..3584441,3584957..3585052,3585596..3585784, 3585893..3586052,3586136..3586266,3587717..3587890, 3588011..3588283,3589463..3589657,3590604..3590807, 3590901..3590970,3591073..3591221,3592636..3592948, 3593940..3593999,3594144..3594296,3594429..3594539, 3594748..3595892) /locus_tag="TCM_012528" /product="DEA(D/H)-box RNA helicase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009016t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s04160.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc834t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc834t2" CDS join(3581513..3581869,3583626..3583780,3583887..3583974, 3584196..3584441,3584957..3585052,3585596..3585784, 3585893..3586052,3586136..3586266,3587717..3587890, 3588011..3588283,3589463..3589657,3590604..3590807, 3590901..3590970,3591073..3591221,3592636..3592944, 3593940..3593999,3594144..3594296,3594429..3594539, 3594748..3595209) /locus_tag="TCM_012528" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG009016t1" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 1" /protein_id="EOY21156.1" /db_xref="Phytozome:POPTR_0015s04160.1" /db_xref="TAIR:AT1G48650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C7X9" /translation="MPCYAAIFQGYLRTTAMSLRPNSLQLNNTPKTLLKPCFFSFLSR KPPASFRRLHLRHGLVTCSGYRAATASSRTPGLDWRNIALPSLQQQQSSNYGRYAYQD VSSDDSDHEFGSTQSQMAASTLDNIDEWRWKLTMLLRNKDEQEVVSRERKDRRDFEQL SALATRMGLHSCQYAKVVVFSKLPLPNYRSDLDDKRPQREVILPFGLQRDVDLHLKAY LTRKAINSANFSDKPLSRSSCGGRIAADEVPIEQEEPFTKISVVMERILLRRSLQLRN RQQEWQESPEGLKMFEFRRSLPAYKERDALLSVISQNQVVVVSGETGCGKTTQLPQYI LESEIEAARGASCSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT RLLFCTTGILLRRLLVDRDLRGVSHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLI LMSATLNAELFSSYFGGAPTIHIPGFTYPVREHFLENILEVTGYRLTPYNQIDDYGQE KMWKMQKQAQSLRKRKSQLTSAVEDALERADFRGYSLRTRESLSCWNPDSIGFNLIEH VLCHIIKKERPGAVLVFMTGWDDINSLKDQLQVHPLLGDPGKVLLLACHGSMPSSEQR LIFEKPKDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWIS KAAARQRRGRAGRVQPGECYHLYPKCVYDTFADYQLPELLRTPLQSLCLQIKSLELGS ITEFLSRALQPPELLSVQNAVEYLKIIGALDENENLTVLGRNLSMLPVEPKLGKMLIL GAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSGQEYSDHIALVRAYEGW KEAEREQSGYEYCWKNFLSAQTLKAIDSLRKQFFYLLKDTGLVDQNIENCNKWSYDEH LIRAVICAGLFPGICSVVNKEKSISLKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEK VKVNSVFLRDSTGVSDSVLLLFGGNISRGGLDGHLKMLGGYLEFFMKPALADTYLSLK RELEELIQKKLLNPTLDMPSSSELLSAVRLLVSEDQCEGRFVFGRQLPVSSKKTVKEK IPGIGGGDNSKSQLQTVLARAGHGAPIYKTKQLKNNQFRSTVIFNGLDFMGQPCSNKK LAEKDAAAEALLWLRGEDHFSSRDVEHASVLLKKSKKRTSVHATKWS" CDS join(3581513..3581869,3583626..3583780,3583887..3583974, 3584196..3584441,3584957..3585052,3585596..3585784, 3585893..3586052,3586136..3586266,3587717..3587890, 3588011..3588283,3589463..3589657,3590604..3590807, 3590901..3590970,3591073..3591221,3592636..3592948, 3593940..3593999,3594144..3594199) /locus_tag="TCM_012528" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG009016t1" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 2" /protein_id="EOY21157.1" /db_xref="Phytozome:POPTR_0015s04160.1" /db_xref="TAIR:AT1G48650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C7X9" /translation="MPCYAAIFQGYLRTTAMSLRPNSLQLNNTPKTLLKPCFFSFLSR KPPASFRRLHLRHGLVTCSGYRAATASSRTPGLDWRNIALPSLQQQQSSNYGRYAYQD VSSDDSDHEFGSTQSQMAASTLDNIDEWRWKLTMLLRNKDEQEVVSRERKDRRDFEQL SALATRMGLHSCQYAKVVVFSKLPLPNYRSDLDDKRPQREVILPFGLQRDVDLHLKAY LTRKAINSANFSDKPLSRSSCGGRIAADEVPIEQEEPFTKISVVMERILLRRSLQLRN RQQEWQESPEGLKMFEFRRSLPAYKERDALLSVISQNQVVVVSGETGCGKTTQLPQYI LESEIEAARGASCSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT RLLFCTTGILLRRLLVDRDLRGVSHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLI LMSATLNAELFSSYFGGAPTIHIPGFTYPVREHFLENILEVTGYRLTPYNQIDDYGQE KMWKMQKQAQSLRKRKSQLTSAVEDALERADFRGYSLRTRESLSCWNPDSIGFNLIEH VLCHIIKKERPGAVLVFMTGWDDINSLKDQLQVHPLLGDPGKVLLLACHGSMPSSEQR LIFEKPKDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWIS KAAARQRRGRAGRVQPGECYHLYPKCVYDTFADYQLPELLRTPLQSLCLQIKSLELGS ITEFLSRALQPPELLSVQNAVEYLKIIGALDENENLTVLGRNLSMLPVEPKLGKMLIL GAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSGQEYSDHIALVRAYEGW KEAEREQSGYEYCWKNFLSAQTLKAIDSLRKQFFYLLKDTGLVDQNIENCNKWSYDEH LIRAVICAGLFPGICSVVVKQREVNFTENNGGWTGSSVLEFCKCWGTQNSIPMASFQ" gene complement(3596323..3602794) /locus_tag="TCM_012529" /note="dbxref CacaoGD:Thecc1EG012529" mRNA complement(join(3596323..3596732,3596835..3596903, 3597269..3597437,3597522..3597635,3597735..3597868, 3597959..3598352,3602703..3602794)) /locus_tag="TCM_012529" /product="Fatty acyl-ACP thioesterases B" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011807001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009021t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04850.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS complement(join(3596415..3596732,3596835..3596903, 3597269..3597437,3597522..3597635,3597735..3597868, 3597959..3598324)) /locus_tag="TCM_012529" /note="paralog of Thecc1EG009021t1" /codon_start=1 /product="Fatty acyl-ACP thioesterases B" /protein_id="EOY21158.1" /db_xref="Phytozome:POPTR_0012s04850.1" /db_xref="TAIR:AT1G08510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2I3" /translation="MASLHFPAGFSFTCSYSREQKLRIKVGAFSRISTAKVSGKIPRT AICKYRRMVSAESLAELGSITKTRTRQNIPTKKQLIDSFRRGIIVQGGVGYRQTVVIR SCEIGADKTATLESLLNLLQETALNHVWISGLLGDGFGATHGMIRNNLIWVVTRMQLQ VDQYPTWGEVVEVDTWVGASGKNGMRRDWLIRSHVTGLVYVRATSTWVMMNQKTRRLS KMPEEVRAEISPWFIEKNAIQENTPETIKKLDNTVKYINSKLKPKRTDLDMNNHVNNV KYVNWMLEAIPEIFLEGYQLFSMTLEYRRECGSSDTVQSLCQPDEDGAFQDEVQDDNG KTHKEQSQVSELEGDASSSGSPLSFTHLLQMTGDSKTDEIVRGRTTWKRKPWLFH" mobile_element complement(3599896..3599978) /note="source:scaffold_3_CACTA_0378 10 92" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3599921..3601409 /note="source:scaffold_3_CACTA_0378 1 1489" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3601510..3602531 /note="source:scaffold_3_CACTA_0378 1490 2511" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3607884..3609298 /note="source:CACAO_M_E49195_F17_scaffold_6 118 1525" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3615287..3617448) /locus_tag="TCM_012531" /note="dbxref CacaoGD:Thecc1EG012531" mRNA complement(join(3615287..3617090,3617184..3617448)) /locus_tag="TCM_012531" /product="Glycosyltransferase family 61 protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008368001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012535t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(3615922..3617090,3617184..3617337)) /locus_tag="TCM_012531" /note="paralog of Thecc1EG012535t1" /codon_start=1 /product="Glycosyltransferase family 61 protein, putative" /protein_id="EOY21159.1" /db_xref="TAIR:AT3G18180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE87" /translation="MGEKIMYDTIFARSFSRSDQKKLGYGAFLGCLLIALCFCLVFKP YTDPRSVRLNSVPKRMKLVCNSETRSDFCEINGDIRIDAKSSTVLFSASPQESILEEN SSRVIRPYTRKEDEHAMSTVKKWSIKPAVDNNTIPQCNQNHGVPAVLFSLGGYSGNNY HDFTDIIIPLYSTARLFDGEVKFLITDRNPWWIKKFQIILHKLSNYDVVDIDNEESIH CFTSVIVGLKRSPHELSIDTTKSPYSMKNFRQFLRSAYSLNKSTTIRMEDDGKARPRL LIVSRSRTRTFTNTDEIARMARNLGYDVVVAEATNVPRFAEIVNSCDVMMGVHGAGLT NMVFLPENAILIQIIPIGGVEWPARTAFGEPSKDMNIRYLDYKIKTEESTLIQQYPPQ HEVLNNPSSIWKQGWLAFKAVYLDNQNVNLDVNRFRPTLLRALELLHQ" gene 3621171..3624136 /locus_tag="TCM_012532" /note="dbxref CacaoGD:Thecc1EG012532" mRNA join(3621171..3621525,3621725..3621898,3622397..3622554, 3622962..3623039,3623294..3624136) /locus_tag="TCM_012532" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(3621231..3621525,3621725..3621898,3622397..3622554, 3622962..3623039,3623294..3623656) /locus_tag="TCM_012532" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21160.1" /translation="MAMKLIGFGSIWCGWVMSCASIATTAILVNGSPTREVSMERGLR QGCPFYPILFNIMVEVFSAFMFKAADWILIKGVDVGSSDICVSHLQYVDDTVITWVVS GCISIWQPIIQKIEGKLASWKVRTFVHGKASDVVEIGYEQYAFIFHILFSTPNEVNGL LMIRLGMSSYVEVCLDGKVSIGKVSKVLLKVKWLIGVFMINSYGKGLLQAIWIAWNDM VFKGKEWDGCQIFELTQPIEVAHVSKAELNAVKEVGLLFAVSRWNITYPLLSECDPNN VVKWIKKSNEVPWKLRPLVIQTFKLLNTVLRWDIRHILRSVNDAVDSLAKEKVLRTQS LQWVIGVDNGESDAAYLNPAS" mobile_element 3624607..3628031 /note="source:CACAO_M_E12225_F323_scaffold_3 1 3425" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3631549..3637469) /locus_tag="TCM_012535" /note="dbxref CacaoGD:Thecc1EG012535" mRNA complement(join(3631549..3632001,3632240..3632303, 3632688..3632783,3632930..3633005,3635152..3636274, 3636418..3636927,3637052..3637469)) /locus_tag="TCM_012535" /product="Glycosyltransferase family 61 protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012531t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04840.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(3631860..3634652) /note="source:CACAO_M_E73030_F79_scaffold_10 1 2768" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(3631862..3632001,3632240..3632303, 3632688..3632783,3632930..3633005,3635152..3636274, 3636418..3636927,3637052..3637205)) /locus_tag="TCM_012535" /note="paralog of Thecc1EG012531t1" /codon_start=1 /product="Glycosyltransferase family 61 protein, putative" /protein_id="EOY21161.1" /db_xref="Phytozome:POPTR_0012s04840.1" /translation="MGEKMMYDTIFARSFSRYDQKKLSYGAFLGCLLIALSFCTVFKP YLGPLPVLNMRLSMDAGLKMLRITDSASSQKLWANDASGSKELMSNDKSSFLRIIVNQ TSSPQIEMVVDNDTSTSNETISNDMVSFNNMPLPVVNETISSSKTQEMNYTLSTNATM RNDIISYNTPLPAADDDRMSSSSNLTTTNDLVSSNMSVPVVKSSSSETLEINSRNSSQ QVRDVVPEKMKPICNLEGRTEYCEMNGDIRIDGKSSTVFMADSSQAAGILVENSSWII SPYARKGDEEALNRVTKWSVKSGVDGYAVPQCNQNHRVPAIIFSLGGYAGNNFHDYTD IVIPLYLTSRQFDGEVKFLITDRNPWWINKFQNVLRTLSRYELIDIDKEENVHCFTTV TVGLKRYPKELSIDPSKSPYSMKKFRQFLRSAYSLKKGTAIKMKDNGGKRPRLLILSR KRTRAFTNTNDIAKMARRLGFKVVVAEADSNVARFAEIVNSCDVMMGVHGAGLTNMVF LPENAILIQVVPIGGFEWLARTDFGEPSKYMNLRYLEYKIKTEESTLIQQYPPQHEVL SNPASIEKQGWYAFKSVYLEKQNVHLDVNRKIEYMETVLKFMILYVIEIVAYDTMWWG FPWTAYERGTVTQLYIYLQGEMLDEVSPEAQDSLLIVDQDENESRSCILENLITVAHR GDVEADVNLCGVLIGIRGNECLSGRRDGCYGPDVSFGS" mobile_element complement(3641375..3642748) /note="source:scaffold_5_CACTA_0602 1981 3346" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3642749..3645662 /note="source:CACAO_M_E12228_F80_scaffold_3 1 2914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3645663..3646255 /note="source:CACAO_M_E214_F143_scaffold_1 1358 1947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3646256..3646775) /note="source:INTACT554_F250_scaffold_7-int 2630 2991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3646978..3647428) /note="source:INTACT554_F250_scaffold_7-int 1848 2277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3647407..3648469 /note="source:CACAO_Mutator_E1149_scaffold_5 5860 6933" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3647588..3659936) /note="source:INTACT458_F219_scaffold_7-int 3491 15866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3659975..3660293) /note="source:INTACT554_F250_scaffold_7-int 17380 17667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3660152..3660320 /note="source:INTACT473_F7_scaffold_3-int 6509 6672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3660544..3661000) /note="source:INTACT458_F219_scaffold_7-int 1848 2270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3660985..3662047 /note="source:CACAO_M_S_E38315_F276_scaffold_4 20881 21939" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3665758..3675979) /note="source:INTACT767_F326_scaffold_6-int 1 10243" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3678500..3693498) /locus_tag="TCM_012538" /note="dbxref CacaoGD:Thecc1EG012538" mRNA complement(join(3678500..3679501,3687301..3687737, 3688513..3688560,3688744..3688839,3688992..3689138, 3689567..3690049,3692818..3692883,3692993..3693498)) /locus_tag="TCM_012538" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011198001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046178t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s02420.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1767t4" CDS complement(join(3678878..3679501,3687301..3687737, 3688513..3688560,3688744..3688839,3688992..3689138, 3689567..3690049,3692818..3692883,3692993..3693197)) /locus_tag="TCM_012538" /note="paralog of Thecc1EG046178t2" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY21162.1" /db_xref="Phytozome:POPTR_0008s02420.1" /db_xref="TAIR:AT5G04700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZ99" /translation="MLTQLNIIIIFHCYVFREFTFRLALLCCWHNSLDMATNTSLSRS SHQKSLQDESNLVAGQQQPPEITPASNSTAVEGAEFQTVEVEPRASGIEIPSRNLLLT LLQYISSGDLVSVNDFLNNYSFPLNAEFFHYRSVLHAAIILGHLKIFKLLVSFASDED LQLTDYNSNTAMSFAAMHGNTEIAECLFRRNKNLVTTVNLQGNSPVLLACRGGHKDTL GYLYSVTPIDFLLSENKIHGSRLLNACILSKQFDVAFDLIRQCPAISLTIDINYIPLV GLATEKSLYLSGSRLAFWQRWIYYCLKENKPPASTYAFTYISERRQSEGNKSVITQVA KKLLGSGSNLLNMFGIKQIYDLKSDHANAKELLCRIAKYISTLDKAQILQGVVHSAMI GAAKLGVTEFIIEMSKANPDIMSFTDDHGRNIFMIAAIYRQEKVFSLICGIPALTGQL LPYVDIYGNALLHLAAELGPNSEAKLTQISGAALQMQRELQWFTETKNILPQVHARYT NNKMQTAKQTFDETHKSLRKQGEEWMKQLSSSSTVVGTLIMTIMFAAAFTVPGGNDQN NGFPIFLTSGHKHEVAFMIFIISDAISLFASSTSVLMFLGILTTRYAMEDFLTSLPNK LIIGLSTLFISIATMMVAFCASLVIMLQGRLWIIIPIILLASIPITLFAWLQFPLLVE VIVSSYGAGIFDRKMKPWI" mobile_element 3680483..3680539 /note="source:INTACT662_F291_scaffold_4-int 4377 4431" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3680514..3685082 /note="source:INTACT662_F291_scaffold_4-int 101 4721" /mobile_element_type="retrotransposon:LTR/Copia" gene 3685117..3686885 /locus_tag="TCM_012540" /note="dbxref CacaoGD:Thecc1EG012540" mRNA join(3685117..3685247,3685350..3685611,3685731..3685883, 3685962..3686058,3686142..3686650,3686675..3686885) /locus_tag="TCM_012540" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS join(3685418..3685611,3685731..3685883,3685962..3686058, 3686142..3686291) /locus_tag="TCM_012540" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21163.1" /translation="MVRWVSVTQKVEGRKTYAQALMGESETERSKNLQKEKIAGCSRA ECESVVDEENYTAWNSVLSKLALSKAMKESRGAWLEEWFDYVKEWLEEFTYTSRQTWI ASYGVPLHAWNVFMNAMQIVTKEKMKIKGVIKLRVGNRFYDIQVLEVTQSINGGLKVR EKLVLEEGTWQLIKDVTAPVILLKKAVKGCRKGGLHS" mobile_element complement(3694025..3695428) /note="source:INTACT622_F276_scaffold_7-int 6228 7624" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3695429..3697983 /note="source:CACAO_M_S_E17009_F266_scaffold_3 1 2555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3697984..3699956) /note="source:INTACT622_F276_scaffold_7-int 4249 6230" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3704321..3709609) /locus_tag="TCM_012541" /note="dbxref CacaoGD:Thecc1EG012541" mRNA complement(join(3704321..3704641,3704739..3705196, 3707626..3708108,3709378..3709609)) /locus_tag="TCM_012541" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.32 coverage" mobile_element 3707102..3707196 /note="source:CACAO_on_E681_scaffold_9 33 128" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3707115..3707494 /note="source:CACAO_Mariner_E38_scaffold_2 1319 1739" /mobile_element_type="transposon:TIR/Tc1-Mariner" CDS complement(join(3707879..3708108,3709378..3709522)) /locus_tag="TCM_012541" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21164.1" /translation="MASLARCCNSIFNHSPVEENCSGMSLRPHLEYNQAAQGLRRSFS TDLKRIENPSRSLLLTLMKNIYSGDLASVNKFLNNYAFPLTTQPLTSGTALHAATNAG QSKIVQLLVNFASEKDLEVKNK" mobile_element 3710614..3724546 /note="source:CACAO_on_E33_A_scaffold_3 1 13933" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(3711832..3712931) /locus_tag="TCM_012542" /note="dbxref CacaoGD:Thecc1EG012542" mRNA complement(join(3711832..3712003,3712612..3712680, 3712774..3712931)) /locus_tag="TCM_012542" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3348t1" CDS complement(join(3711972..3712003,3712612..3712680, 3712774..3712858)) /locus_tag="TCM_012542" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21165.1" /translation="MASSSQQKSLQDESHLEAGQQQWSEITPASTSAAVEGADGFHSV KVEPRASARSTPAFARS" mobile_element 3724310..3726882 /note="source:INTACT11F_F4_scaffold_1-int 63 4679" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3726863..3728351) /note="source:INTACT405F_F91_scaffold_4-int 16620 18109" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3728947..3729165) /note="source:CACAO_M_S_E38315_F276_scaffold_4 20492 20710" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3729796..3730168) /note="source:INTACT405F_F91_scaffold_4-int 14971 15351" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3730326..3730376) /note="source:INTACT1313F_F380_scaffold_7-int 13945 13996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3730428..3730478) /note="source:INTACT1313F_F380_scaffold_7-int 13945 13996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3730464..3730527 /note="source:INTACT1391F_F387_scaffold_8-int 556 617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3730478..3730528) /note="source:INTACT666_F293_scaffold_9-int 14139 14191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3730528..3730578 /note="source:INTACT58_F125_scaffold_5-int 3590 3642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3730578..3730627 /note="source:INTACT58_F125_scaffold_5-int 3590 3641" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3730680..3730730) /note="source:INTACT666_F293_scaffold_9-int 14139 14191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3730730..3730780 /note="source:INTACT58_F125_scaffold_5-int 3590 3642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3730780..3730830 /note="source:INTACT1391F_F387_scaffold_8-int 567 618" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3730829..3730879 /note="source:INTACT458_F219_scaffold_7-int 3590 3642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3730879..3735514 /note="source:INTACT458_F219_scaffold_7-int 3804 8391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3735533..3739823 /note="source:INTACT458_F219_scaffold_7-int 10741 15011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3739792..3739811 /note="source:INTACT405F_F91_scaffold_4-int 4272 4294" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3739812..3742535 /note="source:CACAO_M_S_E17011_F73_scaffold_3 1 2724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3742536..3744002) /note="source:INTACT405F_F91_scaffold_4-int 16620 18082" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3745414..3745826) /note="source:INTACT405F_F91_scaffold_4-int 14977 15351" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3745799..3747533 /note="source:INTACT11F_F4_scaffold_1-int 2573 4316" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3747536..3747777 /note="source:CACAO_on_E33_A_scaffold_3 13698 13932" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3748408..3749276 /note="source:CACAO_on_E33_A_scaffold_3 1995 2919" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3749276..3749330 /note="source:CACAO_on_E33_A_scaffold_3 12186 12239" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3750839..3750916) /note="source:CACAO_on_E18_scaffold_1 720 798" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(3751951..3753305) /locus_tag="TCM_012547" /note="dbxref CacaoGD:Thecc1EG012547" mRNA complement(3751951..3753305) /locus_tag="TCM_012547" /product="Glycosyltransferase family 61 protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g035100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012531t1" /inference="similar to AA sequence:frave:gene09431" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(3752136..3753083) /locus_tag="TCM_012547" /note="dbxref frave:gene09431; paralog of Thecc1EG012531t1" /codon_start=1 /product="Glycosyltransferase family 61 protein, putative" /protein_id="EOY21166.1" /db_xref="TAIR:AT3G18180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE87" /translation="MHGILEDFHSVPAILFSLGGFSGNHFHDFSDLVIPLYTTSKHFD GEVQFLVTDNRPWWITKFKGILRKLSRYDIVSLDREQKSHCYPSIIIGLKYHKELGID QSKSQDQLSMKDFRQFLRSTYSLKRRNAITIGDDMGKKPRLLIITRRKSRTFTNMGKI TRMAASLGYNVVTAEPNISTSLWSVAQTVNSCDVLIGIHGAGLTNMLFLPDNAILIQI VPLGSIDGLARGYFGEPAVEMNLRYLEYKIKTKESSLSSKYHLDHVIITDPLSVHKQG WDAVRSTYLDKQNVKLDVRRFRTALLKALELLHQLSMYT" gene complement(3754475..3756939) /locus_tag="TCM_012548" /note="dbxref CacaoGD:Thecc1EG012548" mRNA complement(join(3754475..3754739,3754815..3754954, 3756130..3756443,3756876..3756939)) /locus_tag="TCM_012548" /product="Mitochondrial isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012160001" /inference="similar to AA sequence:ricco:29994.m000444" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8224t1" mRNA complement(join(3754677..3754704,3754815..3754955, 3756128..>3756357)) /locus_tag="TCM_012548" /product="Mitochondrial isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012160001" /inference="similar to AA sequence:Phytozome:GSVIVT01012160001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc640t4_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8224t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1743t2" mRNA complement(join(3754822..3754954,3756130..3756476, 3756876..3756929)) /locus_tag="TCM_012548" /product="Mitochondrial isoform 1" /inference="similar to AA sequence:ricco:29994.m000444" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1743t1; alternateUTRof:Thecc1EG012548t1" CDS complement(3756132..3756440) /locus_tag="TCM_012548" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29994.m000444" /codon_start=1 /product="Mitochondrial isoform 1" /protein_id="EOY21167.1" /db_xref="TAIR:AT5G44710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GYG1" /translation="MSAGGLKSMLASAVVAGVTEARARIFGHILNPTGQRSPHKTLRK KLIGEKVADWYPYDIKNDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAVKRNK " CDS complement(3756132..3756440) /locus_tag="TCM_012548" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29994.m000444" /codon_start=1 /product="Mitochondrial isoform 1" /protein_id="EOY21169.1" /db_xref="TAIR:AT5G44710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GYG1" /translation="MSAGGLKSMLASAVVAGVTEARARIFGHILNPTGQRSPHKTLRK KLIGEKVADWYPYDIKNDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAVKRNK " CDS complement(3756132..>3756356) /locus_tag="TCM_012548" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mitochondrial isoform 2" /protein_id="EOY21168.1" /db_xref="Phytozome:GSVIVT01012160001" /db_xref="TAIR:AT5G44710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GYG1" /translation="ILNPTGQRSPHKTLRKKLIGEKVADWYPYDIKNDDPLVMARQEQ ERLSKLEMLKRRGKGPPKKGQGRRAVKRNK" mobile_element 3757536..3757623 /note="source:CACAO_M_S_E16543_F3_scaffold_2 4767 4843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3757571..3757634 /note="source:scaffold_5_CACTA_0584 1926 1988" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3759815..3759942) /note="source:CACAO_Helitron_S_E62_scaffold_9 1 153" /mobile_element_type="transposon:Helitron" mobile_element 3759982..3761750 /note="source:INTACT607_F3_scaffold_4-int 12084 13859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3762264..3762630) /note="source:INTACT554_F250_scaffold_7-int 2642 2991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3763733..3765613) /note="source:INTACT61_F128_scaffold_2-int 11357 13255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3765621..3765782 /note="source:INTACT157_F155_scaffold_1-int 11306 11467" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3767037..3768584 /note="source:INTACT157_F155_scaffold_1-int 12922 14525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3768585..3768922) /note="source:INTACT61_F128_scaffold_2-int 10156 10493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3768586..3769014 /note="source:INTACT157_F155_scaffold_1-int 3590 4015" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3768999..3776431) /note="source:INTACT61_F128_scaffold_2-int 2478 10210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3775577..3776567 /note="source:INTACT157_F155_scaffold_1-int 10590 11604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3776936..3779309 /note="source:INTACT157_F155_scaffold_1-int 12338 14525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3781501..3781552 /note="source:CACAO_M_E52253_F12_scaffold_7 8907 8947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3781553..3784251) /note="source:CACAO_M_E52922_F15_scaffold_8 395 3106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3784352..3784785 /note="source:CACAO_M_E58894_F15_scaffold_9 10880 11266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3785383..3788344) /note="source:CACAO_M_E43479_F273_scaffold_5 1 2976" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3796023..3803753 /locus_tag="TCM_012552" /note="dbxref CacaoGD:Thecc1EG012552" mRNA join(3796023..3796390,3799522..3800066,3800281..3800367, 3800481..3800537,3800675..3800913,3801372..3801490, 3801641..3801727,3801833..3802164,3803583..3803753) /locus_tag="TCM_012552" /product="MATE efflux family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g05510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012553t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04810.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01865t00001" CDS join(3796091..3796390,3799522..3800066,3800281..3800367, 3800481..3800537,3800675..3800913,3801372..3801490, 3801641..3801727,3801833..3801892) /locus_tag="TCM_012552" /note="paralog of Thecc1EG012553t1" /codon_start=1 /product="MATE efflux family protein" /protein_id="EOY21170.1" /db_xref="Phytozome:POPTR_0012s04810.1" /db_xref="TAIR:AT5G52450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHB6" /translation="MEREDQKLSLTFPLIRKSGENDDLTLSNEQKSSNGSDTRKNIFE EVKKQLWLAGPLIAVNLLQYCIQMISVMFVGHLGELALSGASMATSFATVTGFSLLMG MAAALDTLCGQSYGAKQHSMLGIHMQRAIIVLEIVSIPLAIIWVNTRPILVLLGQDHD ISKEAGEYARFMVPSIFAYGLLQCLVKFLQTQNIVFPMMICSGITTLLHILVCWIMVF KSGLGSRGAALSNAISNWINVFLLVLYVKFSPSCAKTWAGFSKEAFHNIFSFLRLAIP SAIMVCLEMWSFEMMVLLSGLLPNPVLQTSVLSICLNTAATVWMIPSGLSGAASTRVS NELGAGHSEAARLAVYVVIVMAISEGLLVGSILILIRNIWGYAYSNEVEVIKYVAAMM PILAISNFLDGIQCVLSGIARGCGWQKIGAYVNLGSYYLVGIPCAILLGFVLDVGGRG LWLGIICALIVQVTSLSIITIRTNWQQEASKAVERVYDYVIPVEVVS" mobile_element complement(3803841..3805284) /note="source:INTACT85_F9_scaffold_4-int 1 1445" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3809416..3828729 /locus_tag="TCM_012553" /note="dbxref CacaoGD:Thecc1EG012553" mRNA join(3809416..3809450,3822348..3822797,3825908..3826452, 3826670..3826756,3826871..3826927,3827072..3827310, 3827745..3827863,3828012..3828098,3828203..3828729) /locus_tag="TCM_012553" /product="MATE efflux family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g05510.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012552t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04810.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1843t1" mobile_element complement(3810947..3813689) /note="source:CACAO_M_E22484_F328_scaffold_3 11521 14253" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(3822498..3822797,3825908..3826452,3826670..3826756, 3826871..3826927,3827072..3827310,3827745..3827863, 3828012..3828098,3828203..3828262) /locus_tag="TCM_012553" /note="paralog of Thecc1EG012552t1" /codon_start=1 /product="MATE efflux family protein" /protein_id="EOY21171.1" /db_xref="Phytozome:POPTR_0012s04810.1" /db_xref="TAIR:AT5G52450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHB6" /translation="MEREDQKFSLTSSLIRISWKNDDSTLSNRQRSSNENNRRKKIFE ESKKQLWLAGPLVAVTLLQYSIQMISLMFVGHLGELALSGASMATSFAAVTGFSLLLG MATALDTLCGQSYGAKQYPMLGIHMQRAMFILVIVSIPLAIIWVNTRPILVLLGQDHD ISKKAGEYACLMVPSLFAYGLLQCLVKFLQTQNIFFPMMICSGITTLLHILVCWIMVF KSGLGFGGAALANSISNWINVFLLVFYVKFSPSCAKTWAGFSKEAFHNIFTFLRLAIP SAIMVCLELWSFEMVVLLSGLLPNPELQTSVLSICLNTAYTVWMIPVGLSSAVSTRVS NELGAGNPEAARFAVCFVIVMTIFEGLLVGSILILIRNIWGYAYSNEVEVVKYVAAMM PILATSCFLDGLQSVLSGIARGCGWQKIGAYINLGSYYLVGVPCAILLAFVLDVGGKG LWLGIICALAVQVTSLSIITIQTNWQEEARKAMERVYEYVIPVEVVS" gene 3828514..3832172 /locus_tag="TCM_012555" /note="dbxref CacaoGD:Thecc1EG012555" mRNA join(3828514..3829229,3829653..3830197,3830431..3830517, 3830620..3830984,3831291..3831409,3831524..3832125) /locus_tag="TCM_012555" /product="MATE efflux family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s18630.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012552t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04810.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1711t3" mRNA join(3828895..3829229,3829653..3830197,3830431..3830517, 3830620..3830676,3830746..3830984,3831291..3831409, 3831524..3831610,3831714..3832172) /locus_tag="TCM_012555" /product="MATE efflux family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s18630.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012552t1" /inference="similar to AA sequence:Phytozome:Glyma09g31030.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1711t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1711t3" CDS join(3828948..3829229,3829653..3830197,3830431..3830517, 3830620..3830984,3831291..3831409,3831524..3831826) /locus_tag="TCM_012555" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012552t1" /codon_start=1 /product="MATE efflux family protein, putative isoform 1" /protein_id="EOY21172.1" /db_xref="Phytozome:POPTR_0012s04810.1" /db_xref="TAIR:AT5G52450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHB6" /translation="MERENEQYSLISSAREDRLGFNGENSREKGVGREEIIEEVKKQL RLAGPLICESLLLYCLQLISVMFVGHLGALALSSASLATSFASVLGFNLLIGMSTALE TLCGQSYGAKQYRMLGIHTQRAMFVLSLISIPLAIVLANTGSILAAIGQDPEISQAAG VYARFMIPSLFAYAILQCLLRFLRTQNNVFPMVLSSGITTLIHIFVCWILVFKFGLGN KGAALAGSISYWINVLALAFYIKLSPSCAGTWTSFSRESMHEIFAFLRLAVPSAVMVC LENWSFQLLVFLSGLLPNPELETSVITICINTTAVIWMIPFGLSSAARLVIHGTIPLL STILTWLALLLCSIRVSNELGAEDPKAAHLAVRVVLFLAISQGILVGLVLILMRNIWG YAYSNDVQVIRYVTAMIPILATSNFIDGVQCVLSGIARGCGWQKIGAYINLGSYYLVG TPLSIVLAFVFRIGGKGLWLGITGALITQMLSLLIITARTNWEQEVKHYFPFFLHLAT SSPWLSALIANLLFSFLGSNLGKKCYGKSSCLESTCGDGQCFIMKQNSCSPTMEQRGS " CDS join(3828948..3829229,3829653..3830197,3830431..3830517, 3830620..3830676,3830746..3830984,3831291..3831409, 3831524..3831610,3831714..3831782) /locus_tag="TCM_012555" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012552t1" /codon_start=1 /product="MATE efflux family protein isoform 2" /protein_id="EOY21173.1" /db_xref="Phytozome:Glyma09g31030.1" /db_xref="TAIR:AT5G52450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHB6" /translation="MERENEQYSLISSAREDRLGFNGENSREKGVGREEIIEEVKKQL RLAGPLICESLLLYCLQLISVMFVGHLGALALSSASLATSFASVLGFNLLIGMSTALE TLCGQSYGAKQYRMLGIHTQRAMFVLSLISIPLAIVLANTGSILAAIGQDPEISQAAG VYARFMIPSLFAYAILQCLLRFLRTQNNVFPMVLSSGITTLIHIFVCWILVFKFGLGN KGAALAGSISYWINVLALAFYIKLSPSCAGTWTSFSRESMHEIFAFLRLAVPSAVMVC LENWSFQLLVFLSGLLPNPELETSVITICINTTAVIWMIPFGLSSAASIRVSNELGAE DPKAAHLAVRVVLFLAISQGILVGLVLILMRNIWGYAYSNDVQVIRYVTAMIPILATS NFIDGVQCVLSGIARGCGWQKIGAYINLGSYYLVGTPLSIVLAFVFRIGGKGLWLGIT GALITQMLSLLIITARTNWEQEAKNAMERVRASKVPAVMDNALS" mobile_element 3835464..3835894 /note="source:scaffold_7_CACTA_0782 1263 1690" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3835581..3836444) /note="source:scaffold_5_CACTA_0613 7342 8237" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3837995..3841119 /note="source:scaffold_5_CACTA_0612 8694 11920" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3840474..3844104) /note="source:INTACT597_F267_scaffold_2-int 10661 13692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3844117..3848042 /note="source:scaffold_5_CACTA_0612 8694 14464" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3852439..3852489 /note="source:CACAO_M_E5899_F5_scaffold_2 20725 20776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3852444..3852525) /note="source:scaffold_3_CACTA_0382 1835 1912" /mobile_element_type="transposon:TIR/CACTA" gene 3853960..3856717 /locus_tag="TCM_012558" /note="dbxref CacaoGD:Thecc1EG012558" mRNA join(3853960..3854678,3855905..3856717) /locus_tag="TCM_012558" /product="Mitochondrial substrate carrier family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003933001" /inference="similar to AA sequence:Phytozome:POPTR_0016s12700.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11240t00001" CDS join(3854268..3854678,3855905..3856441) /locus_tag="TCM_012558" /codon_start=1 /product="Mitochondrial substrate carrier family protein" /protein_id="EOY21174.1" /db_xref="Phytozome:POPTR_0016s12700.1" /db_xref="TAIR:AT5G01340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M038" /translation="MKESQTNPNPRMESKKSIPPYMKAISGSLGGIVEACCLQPIDVI KTRLQLDRMGNYKGIIHCGTTVSRTEGVRALWKGLTPFATHLTLKYALRMGSNAMLQS AFKDSETGKLSNRGRVLAGFGAGVLEALVIVTPFEVVKIRLQQQKGLSPELLKYKGPV HCASTIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVILWKKHEGDGKVLQPW QSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRDGGELKYKGMIHAIRTIYAEEGLRAL WKGLLPRLMRIPPGQAIMWAVADQITGLYERRYLHSAAL" mobile_element complement(3860580..3861045) /note="source:CACAO_PIF_E119_scaffold_3 1762 2210" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 3862459..3863855 /locus_tag="TCM_012559" /note="dbxref CacaoGD:Thecc1EG012559" mRNA join(3862459..3862578,3862992..3863169,3863319..3863444, 3863517..3863855) /locus_tag="TCM_012559" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS join(3863112..3863169,3863319..3863444,3863517..3863719) /locus_tag="TCM_012559" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21175.1" /translation="MMPILAISSFVGRVQSALSGVARRCGWQKIGAYINLGTFYLVGV LVSIILAFIFHLKTNINWAMVGDCSHPSSTNGIVSSHYSRDRLGERGKSLPILEGRGL LNFLFILHFSLNSSLWGNSTHFSFPI" mobile_element 3867204..3867497 /note="source:CACAO_M_E12235_F88_scaffold_3 1 294" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3873772..3884029) /locus_tag="TCM_012560" /note="dbxref CacaoGD:Thecc1EG012560" mRNA complement(join(3873772..3874270,3879065..3879370, 3879445..3879680,3881600..3881725,3882498..3882606, 3882689..3882987,3883558..3883786)) /locus_tag="TCM_012560" /product="Cyclin-dependent kinase D-1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09428" /inference="similar to AA sequence:Phytozome:Glyma05g34150.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02120t00001; inference alignment:Newbler:10:TSA:cgbaB_g02120t00001" CDS complement(join(3874213..3874270,3879065..3879370, 3879445..3879680,3881600..3881725,3882498..3882606, 3882689..3882987,3883558..3883662)) /locus_tag="TCM_012560" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cyclin-dependent kinase D-1 isoform 1" /protein_id="EOY21176.1" /db_xref="Phytozome:Glyma05g34150.2" /db_xref="TAIR:AT1G18040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P29620" /translation="MTEMDPSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKK IRLGKQKEGINFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIR DRNIFLSPADIKSYIQMTLKGLAFCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARI FGSPDRKFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGTSDI DQLGKIFAAFGTPTSSQWPDMVYLPDYVEYQYVPAPPLRSLFPMASDDALDLLSKMFT YDPKVRISVQQALEHRYFSSAPPPTDPPKLPRPNPKSRVSDYNPQEGPTVLSPPRKSR RVMPDRDRFEGNSDQAEKVDDRVGERQAVGDIAGKNEQVPMSIDFSIFGSKPLSRPTI NSADRSHLKRKLDLEFQHNE" mRNA complement(join(3878674..3878914,3879065..3879370, 3879445..3879680,3881600..3881725,3882498..3882606, 3882689..3882987,3883558..3884029)) /locus_tag="TCM_012560" /product="Cyclin-dependent kinase D1,3 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene09428" /inference="similar to AA sequence:Phytozome:Glyma05g34150.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc76t2; inference alignment:Newbler:10:TSA:cgbaB_g02120t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc46t4" CDS complement(join(3878788..3878914,3879065..3879370, 3879445..3879680,3881600..3881725,3882498..3882606, 3882689..3882987,3883558..3883662)) /locus_tag="TCM_012560" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cyclin-dependent kinase D1,3 isoform 2" /protein_id="EOY21177.1" /db_xref="Phytozome:Glyma05g34150.2" /db_xref="TAIR:AT1G18040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P29620" /translation="MTEMDPSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKK IRLGKQKEGINFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIR DRNIFLSPADIKSYIQMTLKGLAFCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARI FGSPDRKFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGTSDI DQLGKIFAAFGTPTSSQWPDMVYLPDYVEYQYVPAPPLRSLFPMASDDALDLLSKMFT YDPKVRISVQQALEHRYFSSAPPPTDPPKLPRPNPKSRVSDYNPQEGPTVLSPPRKSR RVMPDRDRFEGNSDQAEKVDDRVGERQAVGDIAGKNEQVPMSIDFSIFGSKPLSRPTI NSFRMSLVLACRNRLSMDQASKGLSHHLGLSSRSIVQTFFLNK" gene 3885924..3887129 /locus_tag="TCM_012561" /note="dbxref CacaoGD:Thecc1EG012561" mRNA join(3885924..3886323,3886421..3887129) /locus_tag="TCM_012561" /product="Tau class glutathione transferase GSTU26" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020893t1" /inference="similar to AA sequence:ricco:28408.m000200" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8219t1" CDS join(3886015..3886323,3886421..3886786) /locus_tag="TCM_012561" /note="dbxref ricco:28408.m000200; paralog of Thecc1EG020893t1" /codon_start=1 /product="Tau class glutathione transferase GSTU26" /protein_id="EOY21178.1" /db_xref="TAIR:AT2G29420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2X9R6" /translation="MAELKLIASSLSVFCARIEWALKLKGVGYEYLEEDLRNKSPLLL THNPVHKKVPVLLQNGKPIAESLIILEYIEETWKDSPLLPEDPYEKAMARFWAKFADE KCLHGAFDACRAVGDEKEKAIESAAKSFAFLEKQLEGKKYFGGEQIGYLDLALGWIPH WLNVMEEVGCMKLVDTQRTPLLHQWGQEFMEIPLIKECLPPRDKLLGRFTASINYLRS LAASQQ" gene complement(3887409..3889539) /locus_tag="TCM_012562" /note="dbxref CacaoGD:Thecc1EG012562" mRNA complement(join(3887409..3887888,3888672..3888731, 3888829..3889011,3889107..3889539)) /locus_tag="TCM_012562" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008377001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012567t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s04760.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00633t00003" CDS complement(join(3887601..3887888,3888672..3888731, 3888829..3889011,3889107..3889352)) /locus_tag="TCM_012562" /note="paralog of Thecc1EG012567t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21179.1" /db_xref="Phytozome:POPTR_0012s04760.1" /db_xref="TAIR:AT1G18060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SJ64" /translation="MGFQAAPSAFFLSPLICHTYPNSPCSQLSSLRPFLLPRKHVNSF EPHIPCINSGKFLKARTRATLDEKEKEPLIVQEQEPSREVEESVKVLKNAAKTRKIPA EEILSAFSVIEKAKLNPSAFLETLGGPESPGRTWMLIFTAEKQLKDGRYFPLTAVQRF DAVAKRIENGVFLGPIGFLTFEGKFSWKNRILSFIFEKIRVKIGPFNPLEISLGQKED REPSTKDPFFIWFYIDEEIAVARGRSGGTAFWCRCHRVTT" gene 3889328..3912503 /locus_tag="TCM_012568" /note="dbxref CacaoGD:Thecc1EG012568" mRNA join(3889328..3889713,3890106..3890372,3906040..3906098, 3906231..3906306,3906403..3906474,3906575..3906662, 3906810..3907062,3907164..3907279,3907669..3907886, 3907977..3908008,3908118..3908220,3908355..3908574, 3909227..3909556,3912390..3912503) /locus_tag="TCM_012568" /product="B-S glucosidase 44 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008398001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001549t1" /inference="similar to AA sequence:Phytozome:Glyma09g30910.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc33t23; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc33t23; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2314t2" gene 3889673..3891364 /locus_tag="TCM_012563" /note="dbxref CacaoGD:Thecc1EG012563" mRNA join(3889673..3889982,3890107..3890182,3890254..3890372, 3890459..3890517,3890649..3890724,3890821..3890892, 3891088..3891364) /locus_tag="TCM_012563" /product="B-S glucosidase 44, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012568t1" /inference="similar to AA sequence:frave:gene09410" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc34t8" CDS join(3889925..3889982,3890107..3890182,3890254..3890372, 3890459..3890517,3890649..3890724,3890821..3890892, 3891088..3891125) /locus_tag="TCM_012563" /note="dbxref frave:gene09410; paralog of Thecc1EG012568t1" /codon_start=1 /product="B-S glucosidase 44, putative" /protein_id="EOY21183.1" /db_xref="TAIR:AT3G18080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LV33" /translation="MAHCDGRGPSICDVFVKIPVSLQLLKMRVQMSFLVFWVRLVLLA LESFPKGFVFGTATSAYQFEGMAHCDGRGPSICDVFVKIPGIVAKNGTGEVSVDQYHR YKEDVDLMANLNFDAYRFSISWSRIFPDGTGKVNWKGVAYYNRLIDSLLQRVASHVFN GRAAP" CDS join(3890315..3890372,3906040..3906098,3906231..3906306, 3906403..3906474,3906575..3906662,3906810..3907062, 3907164..3907279,3907669..3907886,3907977..3908008, 3908118..3908220,3908355..3908574,3909227..3909341) /locus_tag="TCM_012568" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG001549t1" /codon_start=1 /product="B-S glucosidase 44 isoform 2" /protein_id="EOY21181.1" /db_xref="Phytozome:Glyma09g30910.1" /db_xref="TAIR:AT3G18080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LV33" /translation="MAHCDGRGPSICDVFVKIPGIVAKNATGEVSVDQYHRYKEDVDL MANLNFDAYRFSISWSRIFPDGTGKVNWKGVAYYNRLIDSLLQRGITPYANLYHYDLP EALEKRYNGLLSYQVVKDFADFADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAP GRCSKAYGNCTAGNSGTEPYIVAHHLILAHGAAVQRYRLKYQPKQKGRIGILLDFVWY EPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPRTMQEIVGNRLPKFTKEEVKMVKG SIDFVGINQYTAYYMYDPHQSKPKVLGYQQDWNAGFAYAKRGVPIGPRANSNWLYNVP WGLYKALMYIKERYGNPTVILSENGMDDPGNVTLSQGLHDTTRINYYKAYLTQLRKAV DGGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFSNLKSALYLVRGHFNFSSRKCQL GVIRKHTQDFRPLNLILVI" gene 3892093..3899455 /locus_tag="TCM_012565" /note="dbxref CacaoGD:Thecc1EG012565" mRNA join(3892093..3892329,3897840..3897947,3898229..3898545, 3898689..3898831,3898910..3898962,3899060..3899455) /locus_tag="TCM_012565" /product="Tau class glutathione transferase GSTU26-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012561t1" /inference="similar to AA sequence:ricco:28408.m000200" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc419t3" CDS join(3897852..3897947,3898229..3898545,3898689..3898831, 3898910..3898962,3899060..3899242) /locus_tag="TCM_012565" /note="dbxref ricco:28408.m000200; paralog of Thecc1EG012561t1" /codon_start=1 /product="Tau class glutathione transferase GSTU26-like protein" /protein_id="EOY21184.1" /db_xref="TAIR:AT2G29490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2X9R6" /translation="MACVRSVNNGGQEETAQRMRMCLGIISFIEIRLERTRSARIGGS FLIEGQFLSMQKDLECLLLHNESFATGGASAIQSILISSIASISGCDIYTVQRPHSAS PGAARGTLAVQQERQFCSKLIDLQAVIMQGWDSQLYLFCTRIEWALKLKGVKYEYLEE DLRNKSPLLRTHRPVHKKVPFLLHNDPYEKAIACFWAKFADEKCLHGAFDACRAEGNE KEKAIESAAESFAFLEKQLEGKKYFGREQIGYLDLAFGWIPQEVG" gene complement(3901047..3905385) /locus_tag="TCM_012567" /note="dbxref CacaoGD:Thecc1EG012567" mRNA complement(join(3901047..3901301,3901461..3901643, 3901739..3902000,3905332..3905385)) /locus_tag="TCM_012567" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g007870.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012562t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04760.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00633t00002; inference alignment:Newbler:10:TSA:cgbaL_g00633t00002" CDS complement(join(3901209..3901301,3901461..3901643, 3901739..3901984)) /locus_tag="TCM_012567" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012562t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21185.1" /db_xref="Phytozome:POPTR_0012s04760.1" /db_xref="TAIR:AT1G18060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SJ64" /translation="MGFQAAPSSSFLSPLVCHTYPNLSPSQLSSLRPFLLPHKHVNSF KPHIPCLNSAKFLKARTRATLDEKEKEPLLVQEQEASRDVEESVKVLKNAAKTRKIPA EEVLSACSVIEKAKLNPSAFLETLGGPDSPGRTCVLIFTAEKQLKNGRYFPLTAVQRF DAAISSLISSQCD" mRNA complement(join(<3901223..3901301,3901461..3901643, 3901739..3902113,3902414..3902469,3903082..3903175)) /locus_tag="TCM_012567" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g007870.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012562t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04760.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00232t00003; inference alignment:Newbler:10:TSA:cgbaL_g00633t00002; inference alignment:Newbler:10:TSA:cgbaB_g00232t00005" CDS complement(join(<3901224..3901301,3901461..3901643, 3901739..3901984)) /locus_tag="TCM_012567" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012562t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21186.1" /db_xref="Phytozome:POPTR_0012s04760.1" /db_xref="TAIR:AT1G18060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SJ64" /translation="MGFQAAPSSSFLSPLVCHTYPNLSPSQLSSLRPFLLPHKHVNSF KPHIPCLNSAKFLKARTRATLDEKEKEPLLVQEQEASRDVEESVKVLKNAAKTRKIPA EEVLSACSVIEKAKLNPSAFLETLGGPDSPGRTCVLIFTAEKQLKNGRYFPLTAVQRF DAAISSLIS" mRNA join(3905196..3905953,3906040..3906098,3906231..3906306, 3906403..3906474,3906575..3906662,3906810..3907062, 3907164..3907279,3907669..3907886,3907977..3908008, 3908118..3908220,3908355..3908786) /locus_tag="TCM_012568" /product="B-S glucosidase 44 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008398001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001549t1" /inference="similar to AA sequence:Phytozome:Glyma09g30910.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2314t2" mRNA join(3905679..3905953,3906040..3906098,3906231..3906306, 3906403..3906474,3906575..3906662,3906810..3907062, 3907164..3907279,3907669..3907886,3907977..3908008, 3908118..3908220,3908355..3908574,3909227..3909556) /locus_tag="TCM_012568" /product="B-S glucosidase 44 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008398001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001549t1" /inference="similar to AA sequence:Phytozome:Glyma09g30910.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2314t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2314t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc33t23" CDS join(3905707..3905953,3906040..3906098,3906231..3906306, 3906403..3906474,3906575..3906662,3906810..3907062, 3907164..3907279,3907669..3907886,3907977..3908008, 3908118..3908220,3908355..3908574,3909227..3909341) /locus_tag="TCM_012568" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG001549t1" /codon_start=1 /product="B-S glucosidase 44 isoform 3" /protein_id="EOY21182.1" /db_xref="Phytozome:Glyma09g30910.1" /db_xref="TAIR:AT3G18080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LV33" /translation="MRVQMSSLVFWVGLVLLARYVAGNEGSQVQPETVKLDTGGLSRE SFPKGFVFGTATSAYQVEGMASGDGRGPSIWDVFVKIPGIVAKNATGEVSVDQYHRYK EDVDLMANLNFDAYRFSISWSRIFPDGTGKVNWKGVAYYNRLIDSLLQRGITPYANLY HYDLPEALEKRYNGLLSYQVVKDFADFADFCFKTFGDRVKNWMTFNEPRVVAALGYDN GFFAPGRCSKAYGNCTAGNSGTEPYIVAHHLILAHGAAVQRYRLKYQPKQKGRIGILL DFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPRTMQEIVGNRLPKFTKEEV KMVKGSIDFVGINQYTAYYMYDPHQSKPKVLGYQQDWNAGFAYAKRGVPIGPRANSNW LYNVPWGLYKALMYIKERYGNPTVILSENGMDDPGNVTLSQGLHDTTRINYYKAYLTQ LRKAVDGGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFSNLKSALYLVRGHFNFSS RKCQLGVIRKHTQDFRPLNLILVI" CDS join(3905707..3905953,3906040..3906098,3906231..3906306, 3906403..3906474,3906575..3906662,3906810..3907062, 3907164..3907279,3907669..3907886,3907977..3908008, 3908118..3908220,3908355..3908632) /locus_tag="TCM_012568" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG001549t1" /codon_start=1 /product="B-S glucosidase 44 isoform 1" /protein_id="EOY21180.1" /db_xref="Phytozome:Glyma09g30910.1" /db_xref="TAIR:AT3G18080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LV33" /translation="MRVQMSSLVFWVGLVLLARYVAGNEGSQVQPETVKLDTGGLSRE SFPKGFVFGTATSAYQVEGMASGDGRGPSIWDVFVKIPGIVAKNATGEVSVDQYHRYK EDVDLMANLNFDAYRFSISWSRIFPDGTGKVNWKGVAYYNRLIDSLLQRGITPYANLY HYDLPEALEKRYNGLLSYQVVKDFADFADFCFKTFGDRVKNWMTFNEPRVVAALGYDN GFFAPGRCSKAYGNCTAGNSGTEPYIVAHHLILAHGAAVQRYRLKYQPKQKGRIGILL DFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPRTMQEIVGNRLPKFTKEEV KMVKGSIDFVGINQYTAYYMYDPHQSKPKVLGYQQDWNAGFAYAKRGVPIGPRANSNW LYNVPWGLYKALMYIKERYGNPTVILSENGMDDPGNVTLSQGLHDTTRINYYKAYLTQ LRKAVDGGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFSNLKRYPKMSAYWFKQLL TRKKH" gene complement(3908136..3915792) /locus_tag="TCM_012569" /note="dbxref CacaoGD:Thecc1EG012569" mRNA complement(join(3908136..3909553,3909842..3910062, 3910780..3910872,3910958..3911055,3911929..3912029, 3912394..3912508,3912640..3912789,3912914..3912958, 3915101..3915179,3915309..3915483,3915566..3915603)) /locus_tag="TCM_012569" /product="5'-3' exonuclease family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29654.m000301" /inference="similar to AA sequence:ricco:29654.m000301" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2316t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2316t4" CDS complement(join(3909018..3909553,3909842..3910062, 3910780..3910872,3910958..3911055,3911929..3912029, 3912394..3912508,3912640..3912789,3912914..3912958, 3915101..3915179,3915309..3915469)) /locus_tag="TCM_012569" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29654.m000301" /codon_start=1 /product="5'-3' exonuclease family protein, putative isoform 1" /protein_id="EOY21187.1" /db_xref="TAIR:AT1G18090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE96" /translation="MEICLNSNSEKKSRYIDYFMHRINLLRYHKITPVVVFDGANIPC KAATENERYRRRKDNQELAMAKLKEGDVRGASELFQRAVSITPAMAHQLIHILRSKNI EFVVAPYEADAQLAYLATLEAEKGGVVAVITEDSDLIAYGCPAITFKMDRYGNGEELV LAKVFDSITSKPSFRGFDKELFIGMCVLAGCDFLPSVPGIGIAKAHSLVSKYRNLDRV LSVLKIEKGSQMPEDYSKSFKEAVAVFQHARIYDGEIKGLKHMKPLTKQLLQILDEGL DFLGPEISPSVAIAIAEGILDPTTMEAFDSMATPGNHPVPTEFQASGKRQLLETADIS RQESCFLVFSSHKTREKNKTGTMRQGAVSIEKKYIQDAGLERLAFPLKSQLTKANVVT EDIPLIPNNNPFKKRKLDEMHIAEAKDTTELASSNDEDEIERSEILCVFPDNTQLAFP GRKVEMSSNQIESTAEQISMVSEVESCETLHMNVGSQESVSCNPKRLFSGRGRGKNDK LKLKGSNCKNSETKNSILNFFARV" mRNA complement(join(<3909190..3909553,3909842..3910062, 3910780..3910872,3910958..3911055,3911929..3912029, 3912394..3912508,3912640..3912789,3912914..3912958, 3915101..3915179,3915309..3915483,3915566..3915602, 3915686..3915792)) /locus_tag="TCM_012569" /product="5'-3' exonuclease family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29654.m000301" /inference="similar to AA sequence:ricco:29654.m000301" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc19t4_C2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc19t4_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2316t4" CDS complement(join(<3909192..3909553,3909842..3910062, 3910780..3910872,3910958..3911055,3911929..3912029, 3912394..3912508,3912640..3912789,3912914..3912958, 3915101..3915179,3915309..3915483,3915566..3915602, 3915686..3915763)) /locus_tag="TCM_012569" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29654.m000301" /codon_start=1 /product="5'-3' exonuclease family protein, putative isoform 2" /protein_id="EOY21188.1" /db_xref="TAIR:AT1G18090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE96" /translation="MGIKDLLRFMKPFIEPVHIKKYAGKRVGIDAYSWLHKGAYSCSM EICLNSNSEKKSRYIDYFMHRINLLRYHKITPVVVFDGANIPCKAATENERYRRRKDN QELAMAKLKEGDVRGASELFQRAVSITPAMAHQLIHILRSKNIEFVVAPYEADAQLAY LATLEAEKGGVVAVITEDSDLIAYGCPAITFKMDRYGNGEELVLAKVFDSITSKPSFR GFDKELFIGMCVLAGCDFLPSVPGIGIAKAHSLVSKYRNLDRVLSVLKIEKGSQMPED YSKSFKEAVAVFQHARIYDGEIKGLKHMKPLTKQLLQILDEGLDFLGPEISPSVAIAI AEGILDPTTMEAFDSMATPGNHPVPTEFQASGKRQLLETADISRQESCFLVFSSHKTR EKNKTGTMRQGAVSIEKKYIQDAGLERLAFPLKSQLTKANVVTEDIPLIPNNNPFKKR KLDEMHIAEAKDTTELASSNDEDEIERSEILCVFPDNTQLAFPGRKVEMSSNQIESTA EQISMVSEVE" mobile_element 3918395..3921340 /note="source:CACAO_M_E12236_F44_scaffold_3 1 2946" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3925037..3933588) /locus_tag="TCM_012570" /note="dbxref CacaoGD:Thecc1EG012570" mRNA complement(join(3925037..3925509,3925593..3925775, 3926372..3926599,3926802..3926817,3931169..3931429, 3933020..3933125,3933430..3933588)) /locus_tag="TCM_012570" /product="Alpha dioxygenase, DOX2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04690.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04690.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(3925287..3925509,3925593..3925775, 3926372..3926599,3926802..3926817,3931169..3931429, 3933020..3933086)) /locus_tag="TCM_012570" /codon_start=1 /product="Alpha dioxygenase, DOX2" /protein_id="EOY21189.1" /db_xref="Phytozome:POPTR_0012s04690.1" /db_xref="TAIR:AT1G73680.1" /translation="MVYIPASGHIVDKQTLEQKQHQVIHLEDKFKVWHRLPVFMWLVY LGMKGHLHQRYNLLHVGGIGTIGGKYDTRDFCYNTTDRKCNHPSGDVIGNQGTFFGRN MLPSTSNWMRINWYGFLGKKFKDMFGHVCGLILSGLVGFRKPKDHGVPYSLTKQFFSI YKMHSLLPNKFILRNIKSTTPKYECPLVSENKWEDLTNDNEVIEALREVYEENVDKLD LLVGLHAKKKIKGFAINGTAFFILLLITSRYASMLEADHFFTINFNSQTYAEKGLEWV NKTEALKDVIDRHFLDMTRKWMRCSSAFSVWDAALNKRNYIPLYLRLTP" mobile_element complement(3929060..3930527) /note="source:CACAO_M_S_E84261_F4_scaffold_6 385 1862" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3930522..3930823) /note="source:CACAO_M_E72756_F4_scaffold_10 1 301" /mobile_element_type="retrotransposon:LTR/Copia" gene 3937006..3948699 /locus_tag="TCM_012571" /note="dbxref CacaoGD:Thecc1EG012571" mRNA join(3937006..3937516,3937651..3938490,3939648..3940138, 3941557..3941762,3942299..3942469,3943681..3943995, 3946218..3946376,3946454..3946603,3947204..3947413, 3947508..3948699) /locus_tag="TCM_012571" /product="Myb domain protein 4r1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g11330.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s04260.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1337t1" mRNA join(3937006..3937516,3937651..3938490,3941557..3941762, 3942299..3942469,3943681..3943995,3946218..3946376, 3946454..3946603,3947204..3947413,3947508..3948699) /locus_tag="TCM_012571" /product="Myb domain protein 4r1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g11330.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s04260.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b012144t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1337t1" CDS join(3938055..3938490,3939648..3940138,3941557..3941762, 3942299..3942469,3943681..3943995,3946218..3946376, 3946454..3946603,3947204..3947413,3947508..3948153) /locus_tag="TCM_012571" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Myb domain protein 4r1, putative isoform 1" /protein_id="EOY21190.1" /db_xref="Phytozome:POPTR_0015s04260.1" /db_xref="TAIR:AT3G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SU87" /translation="MSLHDQYDTGKEKDREAEEVDEEEEELSISDNDDGFDEDMEALK QACLRTGADLNDLQITASDNDRPSTSDAAVSSAALAYTDSEDDMEIFRSIRSRFALSV DVCEPLSIQPPCTLPPISSDDDAEDDFETLRVIQRRFSAYSSNDTQGISTEDHIEKTE PIYMTSTPLQDATCNDICERFQDYEKAGNISHLLSGNAEMQPVGLVQWDHSDANELST LADNSSRFPKSAQQLIDAIKKNRSYQKFLRSKLTQIESKIEENKKLKERVKILKDFQV SCKKITGRSLSINKDPRIQLISARKSRTSKDPELLQVNDKNVSADYGPPENSSVTNYR MALTKFPLALQRKKWSREERENLVKGIRQQFQESALQVSVDWFSSADGSSGDGSNLDD IIATVKDLEITPERIREFLPKVNWDQLASMYVKGRSGAECETRWLNHEDPLINCNPWT AEEDKNLLFIVQEKGISNWFDIVVSLGSNRTPFQCLARYQRSLNACILKREWTEEEDD QLRIAVEVFGECDWQSVASTLKGRTGTQCSNRWIKSLHPTRQRVGRWTHDEDKRLKVA VMLFGPKNWRKIAEVIPGRTQVQCRERWVNSLDPALNLGRWTKEEDLRLEAAIEEHGY YWSKVAACMPSRTDNQCWRRWKTLHPKAVPLLQEARRIRKATLVSNFVDRESERPALG PNDFYIPLQLTNSTSEPENTNLPSEGKRKERRRIISAEDFENLPSSKKVEKRGNSSLR QHSRSRKRNELSGAKDDATLASFLQDKLKKNIPSYADGDEMKLAGFLRNKSKKRRHQI AENAHLSIMKGPEQRDKTNQIQFGLQRCEAKTNCDGVIPENSMFRSSLKQTIMSSDMN IVGDDIVNDTVAPHEVVREPDRIDQEGNCEADGITLVQLRKRLKKRGPASSCMRRESE LPSKELDEPRHND" CDS join(3938245..3938490,3941557..3941762,3942299..3942469, 3943681..3943995,3946218..3946376,3946454..3946603, 3947204..3947413,3947508..3948153) /locus_tag="TCM_012571" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Myb domain protein 4r1, putative isoform 2" /protein_id="EOY21191.1" /db_xref="Phytozome:POPTR_0015s04260.1" /db_xref="TAIR:AT3G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SU87" /translation="MTDPPLRTPPSRRLLWRIPTARMIWKFSGVYGVVLRFQWTFVSL CLFSLPALFLQFLLMTMLKMISRLFALSRGGFRLILAMLLQVNDKNVSADYGPPENSS VTNYRMALTKFPLALQRKKWSREERENLVKGIRQQFQESALQVSVDWFSSADGSSGDG SNLDDIIATVKDLEITPERIREFLPKVNWDQLASMYVKGRSGAECETRWLNHEDPLIN CNPWTAEEDKNLLFIVQEKGISNWFDIVVSLGSNRTPFQCLARYQRSLNACILKREWT EEEDDQLRIAVEVFGECDWQSVASTLKGRTGTQCSNRWIKSLHPTRQRVGRWTHDEDK RLKVAVMLFGPKNWRKIAEVIPGRTQVQCRERWVNSLDPALNLGRWTKEEDLRLEAAI EEHGYYWSKVAACMPSRTDNQCWRRWKTLHPKAVPLLQEARRIRKATLVSNFVDRESE RPALGPNDFYIPLQLTNSTSEPENTNLPSEGKRKERRRIISAEDFENLPSSKKVEKRG NSSLRQHSRSRKRNELSGAKDDATLASFLQDKLKKNIPSYADGDEMKLAGFLRNKSKK RRHQIAENAHLSIMKGPEQRDKTNQIQFGLQRCEAKTNCDGVIPENSMFRSSLKQTIM SSDMNIVGDDIVNDTVAPHEVVREPDRIDQEGNCEADGITLVQLRKRLKKRGPASSCM RRESELPSKELDEPRHND" mobile_element complement(3952204..3952216) /note="source:INTACT567_F258_scaffold_9-int 9268 9279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3952217..3962526 /note="source:CACAO_M_S_E17021_F51_scaffold_3 1 10310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3963636..3963770 /note="source:INTACT261_F189_scaffold_2-int 11887 12038" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3968891..3969266) /note="source:CACAO_M_E33804_F134_scaffold_4 6435 6814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3968912..3969462 /note="source:CACAO_M_S_E144694_F278_scaffold_10 8043 8592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3969466..3969822) /note="source:CACAO_M_E33804_F134_scaffold_4 6435 6791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3971484..3971619 /note="source:scaffold_9_CACTA_0941 1325 1456" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3974087..3977042 /note="source:CACAO_M_E12242_F72_scaffold_3 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3979947..3982409) /locus_tag="TCM_012575" /note="dbxref CacaoGD:Thecc1EG012575" mRNA complement(join(3979947..3980302,3980594..3980637, 3981504..3981693,3981991..3982409)) /locus_tag="TCM_012575" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005367t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(3980302,3980594..3980637,3981504..3981693, 3981991..3982124)) /locus_tag="TCM_012575" /note="paralog of Thecc1EG005367t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21192.1" /translation="MIERGKSSAVLRLVIVNGKVYMEKSYEPYQTRDLFTLWGILQLL RAEVNIMPWEKMSAIKNCSKRIKWEDRVTYAYWKGNPIVSLERKGLLKCNLLDKYDWN ACFYFQREVKKREIVICIEE" mobile_element 3986818..3989546 /note="source:CACAO_M_S_E17029_F73_scaffold_3 1 2729" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3987518..3989896 /locus_tag="TCM_012576" /note="dbxref CacaoGD:Thecc1EG012576" mRNA join(3987518..3987566,3988647..3988890,3989118..3989187, 3989410..3989590,3989715..3989896) /locus_tag="TCM_012576" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1739t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1739t4" mRNA join(<3989158..3989187,3989410..3989590,3989653..3989896) /locus_tag="TCM_012576" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2134t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1739t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2134t1" CDS join(<3989160..3989187,3989410..3989590,3989653..3989656) /locus_tag="TCM_012576" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21194.1" /translation="ISELHPRKQEKRKKREEWKNWYKRLARSRKAFGGRMFVEASLRL SRARWEFRVVIENLTNLLPEASTNKR" CDS join(3989432..3989590,3989715..3989792) /locus_tag="TCM_012576" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21193.1" /translation="MEKLVQKTCEVSKGIRGKNVCRGFVAIVTGSMGVPSRDRKPNQS STRGKHKQKVHGKGYRQADFPHNICPCKQQKRVH" gene 3990876..3992282 /locus_tag="TCM_012578" /note="dbxref CacaoGD:Thecc1EG012578" mRNA 3990876..3992282 /locus_tag="TCM_012578" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.32 coverage" CDS 3991449..3991688 /locus_tag="TCM_012578" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21195.1" /translation="MGKEDLMSGGSNSNLILKDAIGLNHNSASFWRPVLDRAGTKLVG LKAKTLSFRGRVTLLKSILASLPIPIKVKNELEKL" gene 3992436..3993324 /locus_tag="TCM_012579" /note="dbxref CacaoGD:Thecc1EG012579" mRNA 3992436..3993324 /locus_tag="TCM_012579" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.21 coverage" CDS 3992482..3992694 /locus_tag="TCM_012579" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21196.1" /translation="MLTMIFCVFCATQSLSLAIICLLNVKKHGKYGQGGVKCGVWFGY PLEMLEGYAMFGMDANWGVRIKEPGG" gene complement(3993733..3996401) /locus_tag="TCM_012580" /note="dbxref CacaoGD:Thecc1EG012580" mRNA complement(join(3993733..3994624,3995493..3996401)) /locus_tag="TCM_012580" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g34070.1" /inference="similar to AA sequence:frave:gene09413" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8281t1" CDS complement(join(3994523..3994624,3995493..3996374)) /locus_tag="TCM_012580" /note="dbxref frave:gene09413" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY21197.1" /db_xref="TAIR:AT1G18080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C4Z6" /translation="MAVSEALVLRGTMRAHTDMVTAIATPIDNSDMIVTSSRDKSIIL WQLTKDEKTYGVPRRRLTGHSHFVQDVVLSSDSQFALSGSWDGELRLWDLNAGTSARR FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGEAHTDWVSCVRFS PNTLQPTIVSASWDKTVKVWNLTNCKIRNTLTGHSGYVNTVAVSPDGSLCASGGKDGV ILLWDLAEGKKLYSLDAGAVIHSLCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVD LKAEAEKSDVTDTANKKKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRF" mobile_element complement(3997870..3997932) /note="source:scaffold_3_CACTA_0382 1863 1923" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4000405..4000784 /note="source:CACAO_M_E44425_F33_scaffold_6 7774 8153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4002937..4003575) /note="source:CACAO_M_E44425_F33_scaffold_6 4662 5299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4005415..4008399 /note="source:CACAO_M_E12246_F7_scaffold_3 1 2985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4013113..4013388) /note="source:CACAO_M_E69760_F9_scaffold_9 9373 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4017633..4019611) /note="source:CACAO_M_E69760_F9_scaffold_9 6704 8671" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4017990..4041922) /locus_tag="TCM_012582" /note="dbxref CacaoGD:Thecc1EG012582" mRNA complement(join(4017990..4018074,4020310..4020418, 4020512..4020751,4022345..4022440,4025532..4025771, 4025856..4026010,4027101..4027448,4027563..4028333, 4028469..4029601,4041632..4041922)) /locus_tag="TCM_012582" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(4020317..4020418,4020512..4020751, 4022345..4022440,4025532..4025771,4025856..4026010, 4027101..4027448,4027563..4028333,4028469..4029360)) /locus_tag="TCM_012582" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21198.1" /translation="MVENHAFPPLPNTHSLAAGRPSNPPQGQSPTPYLTGSTHSVEGR ENLQSPSILDQLQGFHGFQQAISDKNQPPLSPRALKKSFLSIAARNKPFAILSSRDPI TYKDRPAAAFFEDEIQKLAQPFVHSIIGKFSCMPKLQEIRQAFKGIGLTGAYAIRWLD YKHILIHLSNEQDFNWIWTKQQWFIVNQKMRVFKWSLDFEVERESSIVLVWISFPNLK VHLYEKSTLLLIAKTVGKPLFIAEATTNGSRPSVAQVCVEYDCRNAPVEEVWIVIKNR VTRAITGGYAQRVEFSKMPDYYLLQKEAKRANSMMTIQSKQSKKWQPVGKAKTIGVKD VKGSTIGVQDQRKESVPLSNMFGALELCEGNDQEEHVKQGQPEHLNIAIPAQNTVAAT NQAATNLAAAVSQSPDEGREINGSGGNKVIQTKDLDNTPLVTENAQQRRLEIVFDCVA TSGTHEQRDEDSKKKKIQKTSLVRAVDATLHGTEEQKLMAIREVVETSPIGGEGTLVV RWSASRPSHYVHGEWDPMNKVTGVREKELSETVEGDGMSIKNSEHAEIMLEGSGKHNS MNRQGDSQTRGSDGHNRVDSTVACPRDRTKGYDDNPPNLESALVKGNNHAELQVHPRE RHKRHSDSAVPFLKTVSSTTKDAIVMGGNEGDSDEDSISISFAAKNHPAAIKASTIEF FFSLMKKEQCDLSRLNSSIIPALVSAADNNFLCAAPTLQEDILADDLFAAVLDFFQGM CLPRGITSTTLILLPKKSNASAWSDFRPISLCNVLNKIITKLLANWLAKLLPSIITEN QSGFWWGFSWTAYERGTVTQLYNYLQGEMLDEVSPEKPLTGEFKLNVDGSSKYDCQRA VGGGLLRDHTGTLIFGFVENFGPYNSLQAELMALYRGLLLCIEHNVRRLWIEMDAKVV ISHIHREGNQAVDLLSNQGYMHQNLHVFSQAEG" mobile_element 4021770..4024296 /note="source:CACAO_M_E34206_F273_scaffold_4 426 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4032745..4033803 /note="source:CACAO_M_E27022_F33_scaffold_4 1 1057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4033811..4035579) /note="source:CACAO_M_E69760_F9_scaffold_9 6707 8469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4035584..4035797) /note="source:scaffold_9_CACTA_0934 6364 6587" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4035778..4036461) /note="source:CACAO_M_E35188_F7_scaffold_5 6669 7338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4036455..4037043) /note="source:CACAO_M_E69760_F9_scaffold_9 6685 7255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4038670..4040150 /note="source:CACAO_M_E48538_F49_scaffold_6 1770 3246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4044145..4047097 /note="source:CACAO_M_E12254_F33_scaffold_3 1 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4044667..4047051) /locus_tag="TCM_012583" /note="dbxref CacaoGD:Thecc1EG012583" mRNA complement(join(4044667..4044768,4045601..4045684, 4046334..4046464,4046896..4047051)) /locus_tag="TCM_012583" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039555t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1775t1" CDS complement(join(4045635..4045684,4046334..4046464, 4046896..4046936)) /locus_tag="TCM_012583" /note="paralog of Thecc1EG039555t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21199.1" /translation="MRLRVSQFIDNLKWHKISPSSTPWPAKPARRERKQKQNPRKRKS KKKCEFSRKLSEKGGESSDKGKEIASEDQ" gene 4048327..4054002 /locus_tag="TCM_012584" /note="dbxref CacaoGD:Thecc1EG012584" mRNA join(4048327..4049040,4049629..4050161,4050744..4050869, 4051120..4051219,4051306..4051367,4051449..4051551, 4051867..4051989,4052446..4052742) /locus_tag="TCM_012584" /product="Zinc finger (C3HC4-type RING finger) family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene06398" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008653001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008331t1" /inference="similar to AA sequence:ricco:29654.m000307" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc301t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1818t1" mRNA join(4048327..4049040,4049629..4050161,4050744..4050869, 4051120..4051219,4051306..4051367,4051449..4051551, 4052446..4052742) /locus_tag="TCM_012584" /product="Zinc finger (C3HC4-type RING finger) family protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene06398" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008653001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008331t1" /inference="similar to AA sequence:ricco:29654.m000307" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc301t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1818t1" mRNA join(4048546..4049040,4049629..4050161,4050744..4050869, 4051120..4051219,4051306..4051367,4051449..4051551, 4051867..4052011,4052446..4052660,4052917..4054002) /locus_tag="TCM_012584" /product="Zinc finger (C3HC4-type RING finger) family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene06398" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008331t1" /inference="similar to AA sequence:ricco:29654.m000307" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1818t1" CDS join(4048591..4049040,4049629..4050161,4050744..4050869, 4051120..4051219,4051306..4051367,4051449..4051551, 4051867..4052011,4052446..4052660,4052917..4053231) /locus_tag="TCM_012584" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29654.m000307; paralog of Thecc1EG008331t1" /codon_start=1 /product="Zinc finger (C3HC4-type RING finger) family protein isoform 1" /protein_id="EOY21200.1" /db_xref="TAIR:AT1G57820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYZ0" /translation="MAHDSIQLPCDADGACMRCKATPPTEETLTCSMCATPWHVACLA SPPETLVSTLQWHCPDCSGDPLLSAAAVVDGSSSELLASIKAIEADESLTEKEKARKR QELVSGRVEEDGDTKKGKGKEKDSSVLDVLDSSLNCSFCMQLPDRPVTTPCGHNFCLK CFQKWIGQGKRTCAKCRSTIPPKMASQPRINSTLVSVIRMAKLSKSNVAAESHKVFHF MHNQDRPDKAFTTERAQKAGKANAASGKIFVTVPPDHFGPITAENDPARNQGVLVGEC WEDRLECRQWGAHLPHVAGIAGQSNYGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLS GNKRTNKEQSFDQKFEKMNEALRVSCKKGYPVRVVRSHKEKRSSYAPEKGVRYDGVYR IEKCWRKVGIQGFKVCRYLFVRCDNEPAPWTSDEHGDRPRPLPAILELKKAIDISERK ESPSWDFDEEDSCWKWKKPPPPSKKPVNAADLEERKRARKAIRQARNTTVRERLLKEF SCLICRQVMNLPVTTPCAHNFCKSCFEGAFTGKTAVRERNKGGRTLRSQKNILHCPCC PTDVSDFLQNLQVNRELMDVIESLKQKSEENPDPTEDSSEEQTNGLEENADLGSGDSE TGKEAEKTDPKDDSEIPLPDCEPKSKRRKVDAARVAASVENDSPSSTLQVHSSDDDFE " CDS join(4048591..4049040,4049629..4050161,4050744..4050869, 4051120..4051219,4051306..4051367,4051449..4051551, 4051867..4051989,4052446..4052460) /locus_tag="TCM_012584" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29654.m000307; paralog of Thecc1EG008331t1" /codon_start=1 /product="Zinc finger (C3HC4-type RING finger) family protein isoform 2" /protein_id="EOY21201.1" /db_xref="TAIR:AT1G57820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYZ0" /translation="MAHDSIQLPCDADGACMRCKATPPTEETLTCSMCATPWHVACLA SPPETLVSTLQWHCPDCSGDPLLSAAAVVDGSSSELLASIKAIEADESLTEKEKARKR QELVSGRVEEDGDTKKGKGKEKDSSVLDVLDSSLNCSFCMQLPDRPVTTPCGHNFCLK CFQKWIGQGKRTCAKCRSTIPPKMASQPRINSTLVSVIRMAKLSKSNVAAESHKVFHF MHNQDRPDKAFTTERAQKAGKANAASGKIFVTVPPDHFGPITAENDPARNQGVLVGEC WEDRLECRQWGAHLPHVAGIAGQSNYGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLS GNKRTNKEQSFDQKFEKMNEALRVSCKKGYPVRVVRSHKEKRSSYAPEKGVRYDGVYR IEKCWRKVGIQGFKVCRYLFVRCDNEPAPWTSDEHGDRPRPLPAILELKKAIDISERK ESPSWDFDEEDSCWKWKKPPPPSKKPVNAADLEERKRARKAIRQARNTTSSVV" CDS join(4048591..4049040,4049629..4050161,4050744..4050869, 4051120..4051219,4051306..4051367,4051449..4051551, 4052446..4052460) /locus_tag="TCM_012584" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29654.m000307; paralog of Thecc1EG008331t1" /codon_start=1 /product="Zinc finger (C3HC4-type RING finger) family protein isoform 3" /protein_id="EOY21202.1" /db_xref="TAIR:AT1G57820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYZ0" /translation="MAHDSIQLPCDADGACMRCKATPPTEETLTCSMCATPWHVACLA SPPETLVSTLQWHCPDCSGDPLLSAAAVVDGSSSELLASIKAIEADESLTEKEKARKR QELVSGRVEEDGDTKKGKGKEKDSSVLDVLDSSLNCSFCMQLPDRPVTTPCGHNFCLK CFQKWIGQGKRTCAKCRSTIPPKMASQPRINSTLVSVIRMAKLSKSNVAAESHKVFHF MHNQDRPDKAFTTERAQKAGKANAASGKIFVTVPPDHFGPITAENDPARNQGVLVGEC WEDRLECRQWGAHLPHVAGIAGQSNYGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLS GNKRTNKEQSFDQKFEKMNEALRVSCKKGYPVRVVRSHKEKRSSYAPEKGVRYDGVYR IEKCWRKVGIQGFKVCRYLFVRCDNEPAPWTSDEHGDRPRPLPAILELKKAIDISERK ESPSWDFDSSVV" mobile_element 4057766..4060724 /note="source:CACAO_M_E12256_F312_scaffold_3 1 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4060684..4060729 /note="source:CACAO_M_E14081_F316_scaffold_3 13582 13626" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4061245..4064172 /note="source:CACAO_M_S_E17046_F247_scaffold_3 1 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4061916..4070533 /locus_tag="TCM_012585" /note="dbxref CacaoGD:Thecc1EG012585" mRNA join(4061916..4062007,4062658..4062737,4063070..4063354, 4064099..4064232,4065366..4065467,4066763..4066813, 4070163..4070533) /locus_tag="TCM_012585" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage" CDS join(4063278..4063354,4064099..4064232,4065366..4065467, 4066763..4066791) /locus_tag="TCM_012585" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21203.1" /translation="MARISDVKIFNRLGGLGQMPRPRHLRISGNKCLSGRLGVVMGSM GVPGRDSLWYIVSFIDAFTTIAHPREEKLNAEDYLNWEQLEPVYDEYDEEMEEIDVHH AQVGYASIILY" mobile_element 4064076..4064184 /note="source:scaffold_5_CACTA_0611 5920 6025" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4084432..4084489) /note="source:scaffold_8_CACTA_0858 13688 13759" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4084490..4087427 /note="source:CACAO_M_E12258_F281_scaffold_3 1 2922" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4091487..4092542) /locus_tag="TCM_012589" /note="dbxref CacaoGD:Thecc1EG012589" mRNA complement(join(4091487..4091668,4091758..4091930, 4092428..4092542)) /locus_tag="TCM_012589" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045367t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(4091648..4091668,4091758..4091930, 4092428..4092473)) /locus_tag="TCM_012589" /note="paralog of Thecc1EG045367t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21204.1" /translation="MGHPAEVEVLSKALSGIGVDEKSLVSILTQSHHEHKRTIKRGCS QFFVEDERHFERWNDDAIKTLKAEFKRFKALHFMK" mobile_element complement(4095821..4096527) /note="source:scaffold_4_CACTA_0503 506 1212" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4095838..4096654) /note="source:CACAO_M_E2851_F53_scaffold_1 1842 3013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4096755..4098162) /note="source:CACAO_M_E2851_F53_scaffold_1 388 1797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4098263..4098634 /note="source:CACAO_M_S_E51824_F53_scaffold_4 2228 2598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4102508..4107270 /note="source:CACAO_Again_on_S_E95_scaffold_3 1 4763" /mobile_element_type="transposon:TIR/hAT" mobile_element 4107371..4110288 /note="source:CACAO_Again_on_S_E95_scaffold_3 4764 7681" /mobile_element_type="transposon:TIR/hAT" mobile_element 4111373..4111633 /note="source:CACAO_M_E35311_F247_scaffold_5 1 677" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4111634..4113254 /note="source:CACAO_M_E45025_F279_scaffold_6 429 2035" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4113255..4114120 /note="source:CACAO_M_E35311_F247_scaffold_5 678 2933" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4117487..4126759 /locus_tag="TCM_012593" /note="dbxref CacaoGD:Thecc1EG012593" mRNA join(4117487..4117960,4118244..4118405,4118494..4118693, 4118818..4118948,4120583..4120710,4121550..4121777, 4123073..4123351) /locus_tag="TCM_012593" /product="Peroxin 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008394001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07906t00001" mRNA join(4117494..4117960,4118244..4118405,4118494..4118693, 4118818..4118948,4120583..4120710,4121550..4121777, 4123114..>4123140) /locus_tag="TCM_012593" /product="Peroxin 3 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008394001" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc666t1; inference alignment:Newbler:10:TSA:cgbaB_g07906t00001" mRNA join(4117636..4117960,4118244..4118405,4118494..4118693, 4118818..4118948,4120583..4120710,4121550..4121777, 4123073..4123400) /locus_tag="TCM_012593" /product="Peroxin 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008394001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1953t1; alternateUTRof:Thecc1EG012593t1; inference alignment:Newbler:10:TSA:cgbaB_g07906t00001" CDS join(4117947..4117960,4118244..4118405,4118494..4118693, 4118818..4118948,4120583..4120710,4121550..4121777, 4123073..4123328) /locus_tag="TCM_012593" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Peroxin 3 isoform 1" /protein_id="EOY21205.1" /db_xref="Phytozome:GSVIVT01008394001" /db_xref="TAIR:AT1G48635.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S9K7" /translation="MLSLRDLWRRHKRKVLVTAGVLGSGYFLYKLYDAHRHRLADLER QLASERENDEFIKAQMQVHFENIQRIADTTTLPHAMHYLSCRIAEDLDLSHLTNRLMR GKGQPNTLSSSEKLQLWDRLKILSFTRMVVSIWAVTLLSLYIRVQVNILGRHLYIATA RGLGSSNLLEDAELIDRDDQQKFLANADFLANHGLSTLISHMQTAATEVLKAKQLRDF FDTTVLQQIIMQILDMFMSMGSPHHWVDCLMPEDPRLYKFAMASSSDKTNPPDFTQFN QLMVETREVLSSAEFTSVVEISLKAVVNALVEEKGFQSGGSSLTLGMPLARLLPRISQ ICPSLLDEPSKNQFIQIIQSVPEVGLFFTLLYANMSTS" CDS join(4117947..4117960,4118244..4118405,4118494..4118693, 4118818..4118948,4120583..4120710,4121550..4121777, 4123073..4123328) /locus_tag="TCM_012593" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Peroxin 3 isoform 1" /protein_id="EOY21206.1" /db_xref="Phytozome:GSVIVT01008394001" /db_xref="TAIR:AT1G48635.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S9K7" /translation="MLSLRDLWRRHKRKVLVTAGVLGSGYFLYKLYDAHRHRLADLER QLASERENDEFIKAQMQVHFENIQRIADTTTLPHAMHYLSCRIAEDLDLSHLTNRLMR GKGQPNTLSSSEKLQLWDRLKILSFTRMVVSIWAVTLLSLYIRVQVNILGRHLYIATA RGLGSSNLLEDAELIDRDDQQKFLANADFLANHGLSTLISHMQTAATEVLKAKQLRDF FDTTVLQQIIMQILDMFMSMGSPHHWVDCLMPEDPRLYKFAMASSSDKTNPPDFTQFN QLMVETREVLSSAEFTSVVEISLKAVVNALVEEKGFQSGGSSLTLGMPLARLLPRISQ ICPSLLDEPSKNQFIQIIQSVPEVGLFFTLLYANMSTS" CDS join(4117947..4117960,4118244..4118405,4118494..4118693, 4118818..4118948,4120583..4120710,4121550..4121777, 4123114..>4123138) /locus_tag="TCM_012593" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Peroxin 3 isoform 5" /protein_id="EOY21209.1" /db_xref="Phytozome:GSVIVT01008394001" /db_xref="TAIR:AT1G48635.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S9K7" /translation="MLSLRDLWRRHKRKVLVTAGVLGSGYFLYKLYDAHRHRLADLER QLASERENDEFIKAQMQVHFENIQRIADTTTLPHAMHYLSCRIAEDLDLSHLTNRLMR GKGQPNTLSSSEKLQLWDRLKILSFTRMVVSIWAVTLLSLYIRVQVNILGRHLYIATA RGLGSSNLLEDAELIDRDDQQKFLANADFLANHGLSTLISHMQTAATEVLKAKQLRDF FDTTVLQQIIMQILDMFMSMGSPHHWVDCLMPEDPRLYKFAMASSSDKTNPPDFTQFN QLMVETREVLSSGERPGGGE" mRNA join(<4118180..4118405,4118494..4118693,4118818..4118948, 4120583..4120710,4121550..4121777,4123073..4123398, 4126481..4126759) /locus_tag="TCM_012593" /product="Peroxin 3, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008394001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc666t2; alternateUTRof:Thecc1EG012593t3; inference alignment:Newbler:10:TSA:cgbaB_g07906t00001" mRNA join(<4118180..4118405,4118494..4118693,4118818..4118948, 4120583..4120710,4121550..4121777,4123073..4123401, 4126480..4126514) /locus_tag="TCM_012593" /product="Peroxin 3, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008394001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1772t1; inference alignment:Newbler:10:TSA:cgbaB_g07906t00001" mRNA join(<4118180..4118405,4118494..4118693,4118818..4118948, 4120583..4120710,4121550..4121777,4123114..4123398) /locus_tag="TCM_012593" /product="Peroxin 3 isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008394001" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1772t2; inference alignment:Newbler:10:TSA:cgbaB_g07906t00001" CDS join(<4118182..4118405,4118494..4118693,4118818..4118948, 4120583..4120710,4121550..4121777,4123073..4123328) /locus_tag="TCM_012593" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Peroxin 3, putative isoform 3" /protein_id="EOY21207.1" /db_xref="Phytozome:GSVIVT01008394001" /db_xref="TAIR:AT1G48635.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S9K7" /translation="FSILLLLQLIANRLLHFFQYRDLWRRHKRKVLVTAGVLGSGYFL YKLYDAHRHRLADLERQLASERENDEFIKAQMQVHFENIQRIADTTTLPHAMHYLSCR IAEDLDLSHLTNRLMRGKGQPNTLSSSEKLQLWDRLKILSFTRMVVSIWAVTLLSLYI RVQVNILGRHLYIATARGLGSSNLLEDAELIDRDDQQKFLANADFLANHGLSTLISHM QTAATEVLKAKQLRDFFDTTVLQQIIMQILDMFMSMGSPHHWVDCLMPEDPRLYKFAM ASSSDKTNPPDFTQFNQLMVETREVLSSAEFTSVVEISLKAVVNALVEEKGFQSGGSS LTLGMPLARLLPRISQICPSLLDEPSKNQFIQIIQSVPEVGLFFTLLYANMSTS" CDS join(<4118182..4118405,4118494..4118693,4118818..4118948, 4120583..4120710,4121550..4121777,4123073..4123328) /locus_tag="TCM_012593" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Peroxin 3, putative isoform 3" /protein_id="EOY21208.1" /db_xref="Phytozome:GSVIVT01008394001" /db_xref="TAIR:AT1G48635.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S9K7" /translation="FSILLLLQLIANRLLHFFQYRDLWRRHKRKVLVTAGVLGSGYFL YKLYDAHRHRLADLERQLASERENDEFIKAQMQVHFENIQRIADTTTLPHAMHYLSCR IAEDLDLSHLTNRLMRGKGQPNTLSSSEKLQLWDRLKILSFTRMVVSIWAVTLLSLYI RVQVNILGRHLYIATARGLGSSNLLEDAELIDRDDQQKFLANADFLANHGLSTLISHM QTAATEVLKAKQLRDFFDTTVLQQIIMQILDMFMSMGSPHHWVDCLMPEDPRLYKFAM ASSSDKTNPPDFTQFNQLMVETREVLSSAEFTSVVEISLKAVVNALVEEKGFQSGGSS LTLGMPLARLLPRISQICPSLLDEPSKNQFIQIIQSVPEVGLFFTLLYANMSTS" CDS join(<4118182..4118405,4118494..4118693,4118818..4118948, 4120583..4120710,4121550..4121777,4123114..4123189) /locus_tag="TCM_012593" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Peroxin 3 isoform 6" /protein_id="EOY21210.1" /db_xref="Phytozome:GSVIVT01008394001" /db_xref="TAIR:AT1G48635.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S9K7" /translation="FSILLLLQLIANRLLHFFQYRDLWRRHKRKVLVTAGVLGSGYFL YKLYDAHRHRLADLERQLASERENDEFIKAQMQVHFENIQRIADTTTLPHAMHYLSCR IAEDLDLSHLTNRLMRGKGQPNTLSSSEKLQLWDRLKILSFTRMVVSIWAVTLLSLYI RVQVNILGRHLYIATARGLGSSNLLEDAELIDRDDQQKFLANADFLANHGLSTLISHM QTAATEVLKAKQLRDFFDTTVLQQIIMQILDMFMSMGSPHHWVDCLMPEDPRLYKFAM ASSSDKTNPPDFTQFNQLMVETREVLSSGERPGGGEGFSIWRKQSNIGDASS" gene complement(4126807..4127821) /locus_tag="TCM_012594" /note="dbxref CacaoGD:Thecc1EG012594" mRNA complement(join(4126807..4127316,4127405..4127821)) /locus_tag="TCM_012594" /product="Steroid binding protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015151t1" /inference="similar to AA sequence:Phytozome:Glyma19g15780.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1951t1" CDS complement(join(4127034..4127316,4127405..4127679)) /locus_tag="TCM_012594" /note="paralog of Thecc1EG015151t1" /codon_start=1 /product="Steroid binding protein, putative" /protein_id="EOY21211.1" /db_xref="Phytozome:Glyma19g15780.1" /db_xref="TAIR:AT3G48890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBX8" /translation="MGIYSTVMDAVTEVTGLSPTAFFTILAMMVVVYKIVCGMFLGPE DFCQKPPKEPVQLGDVTEEELRAYDGSDPRKPLLIAIKGQIYDVSSSKMFYGRGGPYS MFTGRDASRALAMLSFKPEDLTGNIEGLSAEELAVLEDWEYKFMDKYPIVGRVVPVPN TTANGDKVHLQDKDVNGLQQQQQQI" gene 4127589..4130527 /locus_tag="TCM_012595" /note="dbxref CacaoGD:Thecc1EG012595" mRNA join(4127589..4127662,4127770..4127967,4128483..4128717, 4130133..4130527) /locus_tag="TCM_012595" /product="AtGCP3 interacting protein 1" /inference="alignment:exonerate-protein:2:frave:gene10886" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025237t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025772001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02668t00002" CDS 4128492..4128713 /locus_tag="TCM_012595" /note="paralog of Thecc1EG025237t1" /codon_start=1 /product="AtGCP3 interacting protein 1" /protein_id="EOY21212.1" /db_xref="Phytozome:GSVIVT01025772001" /db_xref="TAIR:AT4G09550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TQT3" /translation="MDPEAARTARESLDLAFHMSKILDTGLDRHTLSVLIALCDLGLN PEALAAVVKELQREPSPSTPLPTSSSQIP" gene complement(4134677..4148319) /locus_tag="TCM_012596" /note="dbxref CacaoGD:Thecc1EG012596" mRNA complement(join(4134677..4134768,4140769..4142261, 4142709..4142947,4146555..4147042,4147932..4148319)) /locus_tag="TCM_012596" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036264t1" /note="quality class is medium-expresste, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.28 coverage" mobile_element 4134724..4134871 /note="source:CACAO_Again_on_E60_scaffold_2 2 158" /mobile_element_type="transposon:TIR/hAT" mobile_element 4136787..4139669 /note="source:CACAO_M_E36498_F9_scaffold_5 1 2887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4139773..4139921 /note="source:CACAO_M_S_E90022_F9_scaffold_8 9689 9828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4139837..4143694) /note="source:INTACT740_F9_scaffold_10-int 787 7328" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(4140862..4142261,4142709..4142805)) /locus_tag="TCM_012596" /note="paralog of Thecc1EG036264t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21213.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AZ88" /translation="MAEDNNNNGNNAINLVLEANRALQNYVVPLLQVQTFYNELIGSI KTTIDVAAGGALISKNAADVYNLLEEIALKNYQWPSERLGPRKVVGAYEIDALGTLTA QVAAEVVALFKKFDTLGVHTVQNSFTICKMCGNSHSSDQCSYNFASVHFVGNFNRQQN NPYSNTYNSGWRNHPNFSWNNNAGPSNPNPNMPPDFQQQAKPPIPEKKSQTEEFLLQY ISKNDAIIQSYSASLRNLKTQVGQLANSINNRPQCALPSDTQVNPKGKEHCNAVTLRS GKEVKGVNEKSIESSKEHIDDDKAIVKKEVEVEKTDNGQAKNQGNSQANYPPLLFPQR LKKQKLNKQFEKFLNVFKKLHINIPFAEALENMLSYVKFLKDILTKKRKLEDFETMAL TEECGIIIQNKLPLILKDLGSFFIPCIIGRFKFTKALCDLGQVFQSCLCQLLRNLDLM RYNLPQFVCKLADRTIKYSIWIIEDVLVKVGHLYILVDFIVLEMKEDL" mobile_element 4143696..4143866 /note="source:CACAO_M_S_E66354_F74_scaffold_5 4714 4893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4143916..4144923) /note="source:CACAO_M_E23633_F9_scaffold_4 1 1006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4145020..4145245 /note="source:CACAO_Again_on_E60_scaffold_2 1 256" /mobile_element_type="transposon:TIR/hAT" mobile_element 4145243..4145419 /note="source:CACAO_Again_on_E60_scaffold_2 120 297" /mobile_element_type="transposon:TIR/hAT" mobile_element 4150149..4151697 /note="source:CACAO_M_E69780_F2_scaffold_9 1 1561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4159920..4160279) /note="source:CACAO_on_E18_scaffold_1 7529 7890" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4160376..4160594) /note="source:CACAO_on_E18_scaffold_1 1 219" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4168946..4168987 /note="source:INTACT711_F307_scaffold_9-int 10194 10236" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4170460..4170700 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3169 3541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4171412..4171428) /note="source:INTACT415F_F22_scaffold_4-int 10423 10442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4171429..4172856 /note="source:CACAO_M_E12267_F9_scaffold_3 1 1428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4174073..4184270) /note="source:CACAO_M_E35704_F13_scaffold_5 1 10170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4185005..4186446 /note="source:CACAO_M_E12269_F9_scaffold_3 1 1442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4188966..4189087) /note="source:scaffold_9_CACTA_0931 2963 3084" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4189088..4200862 /note="source:CACAO_M_S_E17060_F3_scaffold_3 1 11775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4200863..4202936) /note="source:scaffold_9_CACTA_0931 901 2967" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4203403..4204162) /note="source:INTACT859F_F13_scaffold_5-int 9118 9875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4204163..4204873 /note="source:CACAO_M_E65173_F256_scaffold_9 1 1846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4204874..4210825 /note="source:INTACT111_F36_scaffold_10-int 2789 8692" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4210826..4214000 /note="source:CACAO_M_E65173_F256_scaffold_9 1847 10103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4213911..4214012) /note="source:CACAO_M_E35511_F5_scaffold_5 21521 21616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4214001..4223587 /note="source:INTACT267_F13_scaffold_2-int 795 10354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4223533..4223594) /note="source:CACAO_M_E42514_F40_scaffold_5 14440 14501" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(4224548..4229162) /locus_tag="TCM_012600" /note="dbxref CacaoGD:Thecc1EG012600" mRNA complement(join(4224548..4224598,4228184..4229162)) /locus_tag="TCM_012600" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(4228544..4228819) /locus_tag="TCM_012600" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21214.1" /translation="MLRGIDYFFFSSFLSPLVPSKECAMPHGIDYSFFTCNATWHGLF LLLFLFFSISPLILQKNVHLLRFEQKPLTSTLKSLPPYLSPLFLIIS" gene 4229118..4242029 /locus_tag="TCM_012601" /note="dbxref CacaoGD:Thecc1EG012601" mRNA join(4229118..4229662,4230234..4230275,4230372..4230446, 4231464..4231517,4231626..4231727,4232441..4232552, 4233675..4233720,4233865..4233936,4234514..4234576, 4234672..4234826,4234937..4235001,4235729..4235879, 4236033..4236138,4236233..4236368,4236510..4236574, 4236672..4236836,4237450..4237522,4237604..4237678, 4238256..4238629,4241920..4242029) /locus_tag="TCM_012601" /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28408.m000204" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012602t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s09060.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05182t00001" mRNA join(4229118..4229662,4230234..4230275,4230372..4230446, 4231464..4231517,4231626..4231727,4232441..4232552, 4233675..4233720,4233865..4233936,4234514..4234576, 4234672..4234826,4234937..4235001,4235729..4235879, 4236033..4236138,4236233..4236368,4236510..4236574, 4236672..4236836,4237450..4237522,4237604..4237678, 4238268..4238629,4241920..4242029) /locus_tag="TCM_012601" /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28408.m000204" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012602t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s09060.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b012170t1a2; alternateUTRof:Thecc1EG012601t1; inference alignment:Newbler:10:TSA:cgbaB_g05182t00001" CDS join(4229431..4229662,4230234..4230275,4230372..4230446, 4231464..4231517,4231626..4231727,4232441..4232552, 4233675..4233720,4233865..4233936,4234514..4234576, 4234672..4234826,4234937..4235001,4235729..4235879, 4236033..4236138,4236233..4236368,4236510..4236574, 4236672..4236836,4237450..4237522,4237604..4237659) /locus_tag="TCM_012601" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012602t1" /codon_start=1 /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 1" /protein_id="EOY21215.1" /db_xref="Phytozome:POPTR_0019s09060.3" /db_xref="TAIR:AT1G18070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XWV7" /translation="MNRMTVRWETGFAWGPRTPPRCHAKNAKRQHHFYITKHSFLVSS YSKSGFPELRLSFPFATKTLASAQIPRLLSAPMDIEAEIRALQLDSTEDNNGVVNPED AKPEVEMTDKVEEEGMKDELDTKSQPVQAEPKVKDKEVSAPEDVEALDEMEIDKKRHL NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEE RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGAAQADIGVLVISARKGEFE TGYERGGQTREHVQLAKTLGVAKLLVVVNKMDDHTVNWSKERYDEIESKMTPFLRSSG YNVKKDVQFLPISGLVGTNMKTRVDKSTCPWWNGPCLFEALDSVEVPLRDPKGPFRMP IIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAVYCDENKVRCAGPGENLR VRLSGIEEEDILSGFVLSSVVKSIAAVTEFTAQLQILELLENAIFTAGYKAVLHIHSV VEECEIVELLQQIDPKTKKPMKKKVLFVKNGAVVVCRIQVNNLICIEKFSDFPQLGRF TLRTEGKTVAVGKVTDLSSSSSA" CDS join(4229431..4229662,4230234..4230275,4230372..4230446, 4231464..4231517,4231626..4231727,4232441..4232552, 4233675..4233720,4233865..4233936,4234514..4234576, 4234672..4234826,4234937..4235001,4235729..4235879, 4236033..4236138,4236233..4236368,4236510..4236574, 4236672..4236836,4237450..4237522,4237604..4237659) /locus_tag="TCM_012601" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012602t1" /codon_start=1 /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 1" /protein_id="EOY21216.1" /db_xref="Phytozome:POPTR_0019s09060.3" /db_xref="TAIR:AT1G18070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XWV7" /translation="MNRMTVRWETGFAWGPRTPPRCHAKNAKRQHHFYITKHSFLVSS YSKSGFPELRLSFPFATKTLASAQIPRLLSAPMDIEAEIRALQLDSTEDNNGVVNPED AKPEVEMTDKVEEEGMKDELDTKSQPVQAEPKVKDKEVSAPEDVEALDEMEIDKKRHL NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEE RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGAAQADIGVLVISARKGEFE TGYERGGQTREHVQLAKTLGVAKLLVVVNKMDDHTVNWSKERYDEIESKMTPFLRSSG YNVKKDVQFLPISGLVGTNMKTRVDKSTCPWWNGPCLFEALDSVEVPLRDPKGPFRMP IIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAVYCDENKVRCAGPGENLR VRLSGIEEEDILSGFVLSSVVKSIAAVTEFTAQLQILELLENAIFTAGYKAVLHIHSV VEECEIVELLQQIDPKTKKPMKKKVLFVKNGAVVVCRIQVNNLICIEKFSDFPQLGRF TLRTEGKTVAVGKVTDLSSSSSA" mRNA join(4229508..4229662,4230234..4230275,4230372..4230446, 4231464..4231517,4231626..4231727,4232441..4232552, 4233675..4233720,4233865..4233936,4234514..4234576, 4234672..4234826,4234937..4235001,4235729..4235879, 4236033..4236138,4236233..4236368,4236510..4236574, 4236672..4236836,4237450..4237522,4237604..4237678, 4238273..4238486) /locus_tag="TCM_012601" /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:28408.m000204" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012602t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s09060.3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2500t4; inference alignment:Newbler:10:TSA:cgbaB_g05182t00001" mRNA join(4229633..4229662,4231464..4231517,4231626..4231727, 4232441..4232552,4233675..4233720,4233865..4233936, 4234514..4234576,4234672..4234826,4234937..4235001, 4235729..4235879,4236033..4236138,4236233..4236368, 4236510..4236574,4236672..4236836,4237450..4237522, 4237604..4237678,4238256..4238381) /locus_tag="TCM_012601" /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:28408.m000204" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012602t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s09060.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc544t14; inference alignment:Newbler:10:TSA:cgbaB_g05182t00001" mRNA join(4229633..4229662,4231464..4231517,4231626..4231727, 4232441..4232552,4233675..4233720,4233865..4233936, 4234514..4234576,4234672..4234826,4234937..4235001, 4235729..4235879,4236033..4236138,4236233..4236368, 4236510..4236574,4236672..4236836,4237450..4237522, 4237604..4237678,4238268..4238381) /locus_tag="TCM_012601" /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:28408.m000204" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012602t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s09060.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc544t9; alternateUTRof:Thecc1EG012601t4; inference alignment:Newbler:10:TSA:cgbaB_g05182t00001" mRNA join(4229633..4229662,4231464..4231517,4231626..4231727, 4232441..4232552,4233675..4233720,4233865..4233936, 4234514..4234576,4234672..4234826,4234937..4235001, 4235729..4235879,4236033..4236138,4236233..4236368, 4236510..4236574,4236672..4236836,4237450..4237522, 4237604..4237678,4238273..4238381) /locus_tag="TCM_012601" /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:28408.m000204" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012602t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s09060.2" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc544t7; alternateUTRof:Thecc1EG012601t4; inference alignment:Newbler:10:TSA:cgbaB_g05182t00001" CDS join(4229659..4229662,4230234..4230275,4230372..4230446, 4231464..4231517,4231626..4231727,4232441..4232552, 4233675..4233720,4233865..4233936,4234514..4234576, 4234672..4234826,4234937..4235001,4235729..4235879, 4236033..4236138,4236233..4236368,4236510..4236574, 4236672..4236836,4237450..4237522,4237604..4237659) /locus_tag="TCM_012601" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG012602t1" /codon_start=1 /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 3" /protein_id="EOY21217.1" /db_xref="Phytozome:POPTR_0019s09060.3" /db_xref="TAIR:AT1G18070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XWV7" /translation="MDIEAEIRALQLDSTEDNNGVVNPEDAKPEVEMTDKVEEEGMKD ELDTKSQPVQAEPKVKDKEVSAPEDVEALDEMEIDKKRHLNVVFIGHVDAGKSTTGGQ ILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET TRFTILDAPGHKSYVPNMISGAAQADIGVLVISARKGEFETGYERGGQTREHVQLAKT LGVAKLLVVVNKMDDHTVNWSKERYDEIESKMTPFLRSSGYNVKKDVQFLPISGLVGT NMKTRVDKSTCPWWNGPCLFEALDSVEVPLRDPKGPFRMPIIDKFKDMGTVVMGKVES GSVREGDSLLVMPNKAQVKVLAVYCDENKVRCAGPGENLRVRLSGIEEEDILSGFVLS SVVKSIAAVTEFTAQLQILELLENAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTK KPMKKKVLFVKNGAVVVCRIQVNNLICIEKFSDFPQLGRFTLRTEGKTVAVGKVTDLS SSSSA" CDS join(4229659..4229662,4231464..4231517,4231626..4231727, 4232441..4232552,4233675..4233720,4233865..4233936, 4234514..4234576,4234672..4234826,4234937..4235001, 4235729..4235879,4236033..4236138,4236233..4236368, 4236510..4236574,4236672..4236836,4237450..4237522, 4237604..4237659) /locus_tag="TCM_012601" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG012602t1" /codon_start=1 /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 4" /protein_id="EOY21218.1" /db_xref="Phytozome:POPTR_0019s09060.2" /db_xref="TAIR:AT1G18070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XWV7" /translation="MGMKDELDTKSQPVQAEPKVKDKEVSAPEDVEALDEMEIDKKRH LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEE ERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGAAQADIGVLVISARKGEF ETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDDHTVNWSKERYDEIESKMTPFLRSS GYNVKKDVQFLPISGLVGTNMKTRVDKSTCPWWNGPCLFEALDSVEVPLRDPKGPFRM PIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAVYCDENKVRCAGPGENL RVRLSGIEEEDILSGFVLSSVVKSIAAVTEFTAQLQILELLENAIFTAGYKAVLHIHS VVEECEIVELLQQIDPKTKKPMKKKVLFVKNGAVVVCRIQVNNLICIEKFSDFPQLGR FTLRTEGKTVAVGKVTDLSSSSSA" CDS join(4229659..4229662,4231464..4231517,4231626..4231727, 4232441..4232552,4233675..4233720,4233865..4233936, 4234514..4234576,4234672..4234826,4234937..4235001, 4235729..4235879,4236033..4236138,4236233..4236368, 4236510..4236574,4236672..4236836,4237450..4237522, 4237604..4237659) /locus_tag="TCM_012601" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG012602t1" /codon_start=1 /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 4" /protein_id="EOY21219.1" /db_xref="Phytozome:POPTR_0019s09060.2" /db_xref="TAIR:AT1G18070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XWV7" /translation="MGMKDELDTKSQPVQAEPKVKDKEVSAPEDVEALDEMEIDKKRH LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEE ERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGAAQADIGVLVISARKGEF ETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDDHTVNWSKERYDEIESKMTPFLRSS GYNVKKDVQFLPISGLVGTNMKTRVDKSTCPWWNGPCLFEALDSVEVPLRDPKGPFRM PIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAVYCDENKVRCAGPGENL RVRLSGIEEEDILSGFVLSSVVKSIAAVTEFTAQLQILELLENAIFTAGYKAVLHIHS VVEECEIVELLQQIDPKTKKPMKKKVLFVKNGAVVVCRIQVNNLICIEKFSDFPQLGR FTLRTEGKTVAVGKVTDLSSSSSA" CDS join(4229659..4229662,4231464..4231517,4231626..4231727, 4232441..4232552,4233675..4233720,4233865..4233936, 4234514..4234576,4234672..4234826,4234937..4235001, 4235729..4235879,4236033..4236138,4236233..4236368, 4236510..4236574,4236672..4236836,4237450..4237522, 4237604..4237659) /locus_tag="TCM_012601" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG012602t1" /codon_start=1 /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 4" /protein_id="EOY21220.1" /db_xref="Phytozome:POPTR_0019s09060.2" /db_xref="TAIR:AT1G18070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XWV7" /translation="MGMKDELDTKSQPVQAEPKVKDKEVSAPEDVEALDEMEIDKKRH LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEE ERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGAAQADIGVLVISARKGEF ETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDDHTVNWSKERYDEIESKMTPFLRSS GYNVKKDVQFLPISGLVGTNMKTRVDKSTCPWWNGPCLFEALDSVEVPLRDPKGPFRM PIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAVYCDENKVRCAGPGENL RVRLSGIEEEDILSGFVLSSVVKSIAAVTEFTAQLQILELLENAIFTAGYKAVLHIHS VVEECEIVELLQQIDPKTKKPMKKKVLFVKNGAVVVCRIQVNNLICIEKFSDFPQLGR FTLRTEGKTVAVGKVTDLSSSSSA" mRNA join(4231462..4231517,4231626..4231727,4232441..4232552, 4233675..4233720,4233865..4233936,4234514..4234576, 4234672..4234826,4234937..4235001,4235729..4235879, 4236033..4236138,4236233..4236368,4236510..4236574, 4236672..4236836,4237450..4237678,4238256..4238664) /locus_tag="TCM_012601" /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 7" /inference="alignment:exonerate- protein:2:ricco:28408.m000204" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012602t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s09060.2" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc529t6_C2; inference alignment:Newbler:10:TSA:cgbaB_g05182t00001" CDS join(4231466..4231517,4231626..4231727,4232441..4232552, 4233675..4233720,4233865..4233936,4234514..4234576, 4234672..4234826,4234937..4235001,4235729..4235879, 4236033..4236138,4236233..4236368,4236510..4236574, 4236672..4236836,4237450..4237569) /locus_tag="TCM_012601" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG012602t1" /codon_start=1 /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 7" /protein_id="EOY21221.1" /db_xref="Phytozome:POPTR_0019s09060.2" /db_xref="TAIR:AT1G18070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XWV7" /translation="MKDELDTKSQPVQAEPKVKDKEVSAPEDVEALDEMEIDKKRHLN VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGAAQADIGVLVISARKGEFET GYERGGQTREHVQLAKTLGVAKLLVVVNKMDDHTVNWSKERYDEIESKMTPFLRSSGY NVKKDVQFLPISGLVGTNMKTRVDKSTCPWWNGPCLFEALDSVEVPLRDPKGPFRMPI IDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAVYCDENKVRCAGPGENLRV RLSGIEEEDILSGFVLSSVVKSIAAVTEFTAQLQILELLENAIFTAGYKAVLHIHSVV EECEIVELLQQIDPKTKKPMKKKVLFVKNGAVVVCRIQVNNLICIEKFSDFPQLGRFT LRTEGNGDKLFSLPINYCS" gene 4242103..4252236 /locus_tag="TCM_012602" /note="dbxref CacaoGD:Thecc1EG012602" mRNA join(4242103..4242282,4242378..4242532,4242643..4242707, 4244666..4244745,4246796..4246938,4249858..4249963, 4250059..4250194,4250336..4250400,4250497..4250661, 4251279..4252236) /locus_tag="TCM_012602" /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g007166.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012601t3" /inference="similar to AA sequence:Phytozome:POPTR_0013s09190.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2518t1" CDS join(4242244..4242282,4242378..4242532,4242643..4242707, 4244666..4244745,4246796..4246938,4249858..4249963, 4250059..4250194,4250336..4250400,4250497..4250661, 4251279..4251323) /locus_tag="TCM_012602" /note="paralog of Thecc1EG012601t3" /codon_start=1 /product="Translation elongation factor EF1A/initiation factor IF2gamma family protein" /protein_id="EOY21222.1" /db_xref="Phytozome:POPTR_0013s09190.1" /db_xref="TAIR:AT1G18070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XWV7" /translation="MISGAAQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGA AKLLVVVNKMDDHTVNWSKERYDEIESKMTPFLRSSGYNVKKGGEQSTLVKVQKLCLE TEIRSTSTPRTFLPISGLVGTNMKTRVDKSTCPWWNGPCLFEVLDSIEVPLRDPKGPF RMPIIDKFKDMGTVVMEKVESGSVLEGDSLLVMPNKAQVNVLSVYFDENKVRCAGPGE NLRVRLSGIEEDDILSGFVLSSVVKPIAAVTEFTAQLQILELLENAIFTARYKAVLHI HSVVEECEIVELLQEIDPKTKKPMKKKVLFVKNGAVVVCRIQVNNLICIEKFSDFS" gene complement(4247101..4248315) /locus_tag="TCM_012603" /note="dbxref CacaoGD:Thecc1EG012603" mRNA complement(join(4247101..4247397,4247678..4247849, 4247971..4248315)) /locus_tag="TCM_012603" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006561t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(join(4247285..4247397,4247678..4247849, 4247971..4248153)) /locus_tag="TCM_012603" /note="paralog of Thecc1EG006561t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21223.1" /translation="MCGVGVHMPVMTGCESVTDDIACARCEGAHNGISCARCGGAYND SSYVQCGSAYDLGDAVLDWIFIAVKIPPISFGQKFCYSENAFSLQRETLGWMALTFAL DFRCSEMHSRCSEKPLVFKFKDSWILGRGASSCSSYDRLLEHSMIVSTLESLY" gene 4252263..4255267 /locus_tag="TCM_012604" /note="dbxref CacaoGD:Thecc1EG012604" mRNA join(4252263..4252526,4253343..4253999,4254728..4255267) /locus_tag="TCM_012604" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s05760.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031006t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s05760.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3588t4" CDS join(4252458..4252526,4253343..4253999,4254728..4255051) /locus_tag="TCM_012604" /note="paralog of Thecc1EG031006t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /protein_id="EOY21224.1" /db_xref="Phytozome:POPTR_0007s05760.1" /db_xref="TAIR:AT1G15125.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HFN3" /translation="MEESFPMTGGDGPYSYAKNSKLQKEAAVKAKSVIVEAIIEKLEV EDTPSIASTFRIADLGCSTGPNTFFSVNTIIEAVTHKYKTKGHSSLPDFQVHFNDHVS NDFNMLFNSLPPGRQYFVSGVPGSFHSRLFPKASLHFVCSAYALQWLSRVPQELSDIN SPAYNRGRIFYSNAPNEVGKAYTAQYAMDMERFLAARSKEIVPGGLMALLIPGRPDGT LPAESSIGPIFQTLESCLVDMANEGIINKAKIDLFNLPMYCPSPEELRQLIQKNGSFS IARLESNTGAGRKQLCGAGECRSGLENIIVGHFGSDIVEELFERYTKKIAELPPLDTG ETSGIGLCIILKRNH" mobile_element 4255290..4261695 /note="source:CACAO_M_S_E17073_F182_scaffold_3 1 6406" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4261796..4262968 /note="source:CACAO_M_S_E17073_F182_scaffold_3 6407 7579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4265887..4266691 /note="source:CACAO_M_E58324_F9_scaffold_9 1 804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4267874..4270751 /note="source:CACAO_M_E41928_F52_scaffold_5 8088 11011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4270752..4272412) /note="source:INTACT230_F178_scaffold_3-int 8462 10132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4272411..4277992) /note="source:INTACT230_F178_scaffold_3-int 2980 8549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4278093..4278865 /note="source:CACAO_M_S_E66929_F52_scaffold_6 2187 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4278817..4278870) /note="source:CACAO_M_E59641_F12_scaffold_9 1722 1775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4281068..4286970 /note="source:CACAO_M_E43744_F324_scaffold_5 1197 7778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4284971..4289280) /note="source:INTACT559_F78_scaffold_2-int 1773 6127" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4288212..4291163 /note="source:CACAO_M_E10603_F306_scaffold_2 4816 7767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4293269..4296217 /note="source:CACAO_M_E22525_F273_scaffold_3 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4296218..4296432 /note="source:scaffold_4_CACTA_0500 10875 11085" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4296779..4297234 /note="source:CACAO_M_E84908_F12_scaffold_10 2988 3429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4298136..4298165 /note="source:CACAO_M_E12297_F14_scaffold_3 17008 17032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4298166..4298596) /note="source:CACAO_M_E57117_F86_scaffold_8 2416 2846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4298597..4299278) /note="source:CACAO_M_S_E88063_F115_scaffold_7 2456 3137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4299379..4306881 /note="source:CACAO_M_E72736_F115_scaffold_10 699 8211" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4306882..4309382 /note="source:CACAO_M_E12893_F80_scaffold_3 427 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4311332..4314895 /locus_tag="TCM_012612" /note="dbxref CacaoGD:Thecc1EG012612" mRNA join(4311332..4311602,4312927..4313583,4313970..4314895) /locus_tag="TCM_012612" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s05760.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012604t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s05760.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1820t1" CDS join(4313176..4313583,4313970..4313978) /locus_tag="TCM_012612" /note="paralog of Thecc1EG012604t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative" /protein_id="EOY21225.1" /db_xref="Phytozome:POPTR_0007s05760.1" /db_xref="TAIR:AT1G15125.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HFN3" /translation="MLFKSLPPGRQYFVSGVPGSFHSRLFPKASLHFVYSAYALQWLS RVPQELSDINSPAYNRGRIFYSNSPNEVGKAYTAQYAMDMERFLAARAKEMVPGGLMA LLIPGRPDGTLPAESSIGPIFQPLESCLVDMANEWS" gene complement(4314767..4316111) /locus_tag="TCM_012613" /note="dbxref CacaoGD:Thecc1EG012613" mRNA complement(join(4314767..4315759,4316067..4316111)) /locus_tag="TCM_012613" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.66 coverage" CDS complement(4315403..4315642) /locus_tag="TCM_012613" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21226.1" /translation="MINAFKLKWARPKQNKTKRVIPCWAAIGPTRRPVGAQIQHPGLF LEARKVKSKTHRFDACEAAQNDAVLPGPSSFCLPL" mobile_element 4317978..4318460 /note="source:INTACT1330F_F382_scaffold_8-int 2968 3463" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4318561..4319956 /locus_tag="TCM_012615" /note="dbxref CacaoGD:Thecc1EG012615" mRNA 4318561..4319956 /locus_tag="TCM_012615" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029730t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc5143t4" CDS 4318811..4319695 /locus_tag="TCM_012615" /note="paralog of Thecc1EG029730t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21227.1" /translation="MSVEVTWRAPWMPHHPVLYKCGNEPWVPLMGPWGAISYAPIMVR RQFGSEQFVPMTHRLNTLEFAYGEPGFLKRIEEIAQAWKKTSRVDQGRYTDEVTTRYQ IWHDQRVKDMVYPKEDALRGPVDPEPRDALLESELARKKSEVENASWKQRYEDLQKEC EKMKREVSEQRKKVRKMEGKYESLNDKFSATTSELQREIQVRENRGNELQTHNDGLRR QVRFQQESIELLRQEYEELEGVMTTYQQEYERLKQQSTRIQEWGESYRQAYTEKYNQM DYLVWQMREVAYKARSMA" gene 4319995..4320934 /locus_tag="TCM_012616" /note="dbxref CacaoGD:Thecc1EG012616" mRNA 4319995..4320934 /locus_tag="TCM_012616" /product="Gag-pro-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022266t1" /inference="similar to AA sequence:Phytozome:Glyma16g09970.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10975t2" CDS 4320094..4320825 /locus_tag="TCM_012616" /note="paralog of Thecc1EG022266t1" /codon_start=1 /product="Gag-pro-like protein" /protein_id="EOY21228.1" /db_xref="Phytozome:Glyma16g09970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0E2V7" /translation="MEEEQRERMDRMERAQEEMREQLAKMMELMMSLSKGKRAIEEPA PSENPPAQDSGNQREDPPYPPGFTPPHAQTSQRVHPQVIPPVYYNAPPPLGHQPIHGQ FGPYSGINPAEPINVPDLDDPKEQEKLRKDSSQTGENEKDQKKYDLLEERLRAIEGVD RFGTMDATELCLVPDVLIPAKFKVPKFEKYDGTKCPMAHITMYCRKMAAQSHDDKLLI HFFQDSLTGSAARWYVQLDRNRIKT" mobile_element 4323871..4325990 /note="source:INTACT1330F_F382_scaffold_8-int 8722 10837" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4324271..>4325066 /locus_tag="TCM_012618" /note="dbxref CacaoGD:Thecc1EG012618" mRNA join(4324271..4324366,4324470..>4325066) /locus_tag="TCM_012618" /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026472t1" /inference="similar to AA sequence:Phytozome:Glyma16g09970.1" /note="quality class is strongpartial-expresste, express is strong, homology is paralog strong, intron is none, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3524t1_G2" CDS 4324527..>4325066 /locus_tag="TCM_012618" /note="paralog of Thecc1EG026472t1" /codon_start=1 /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H" /protein_id="EOY21229.1" /db_xref="Phytozome:Glyma16g09970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q2J0" /translation="MCVDYRDLNRASPKDSFPLPHIDTLVDNTAKHALFSFMDGFSGY NQIKMAPEDMEKTTFVTMWGTFCYKVIPFGLKNAGATYQRAMVALFHDMMHKEIEVYV DDMIAKSHTERDHTVNLKKLFERLWKFQLKLNPAKCTFGVTSGKLLGFIVSEKGIEVD PDKIRAIQELPPPKTQKEVR" gene 4325034..4325940 /locus_tag="TCM_012619" /note="dbxref CacaoGD:Thecc1EG012619" mRNA join(4325034..4325661,4325747..4325940) /locus_tag="TCM_012619" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029731t1" /inference="similar to AA sequence:Phytozome:Glyma08g41350.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1905t1_G2" CDS join(4325235..4325661,4325747..4325787) /locus_tag="TCM_012619" /note="paralog of Thecc1EG029731t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21230.1" /db_xref="Phytozome:Glyma08g41350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P5Z2" /translation="MPPTVGKPLILYLTVNKDSMGCVLGQHDETGKKERAVYYLSKKF MEYESKYSALEKMCCALSWTAQRLRQYMLYYTTWLVAKLDPIKYIFEKPYLSGRIARW QVLLSEYDIVYVSQKSIKGSAIADFLADRANEDYESVSFDWHPMLWGTELGQC" mobile_element complement(4326345..4329003) /note="source:INTACT60_F127_scaffold_9-int 2165 4881" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4326405..4327468 /locus_tag="TCM_012620" /note="dbxref CacaoGD:Thecc1EG012620" mRNA 4326405..4327468 /locus_tag="TCM_012620" /product="RNA-directed DNA polymerase" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g13590.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041414t1" /inference="similar to AA sequence:Phytozome:Glyma06g23600.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc8Loc644t2" CDS 4326438..4327454 /locus_tag="TCM_012620" /note="paralog of Thecc1EG041414t1" /codon_start=1 /product="RNA-directed DNA polymerase" /protein_id="EOY21231.1" /db_xref="Phytozome:Glyma06g23600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q2J0" /translation="MLARQIMRAGYYWLTLESDCINFARKCHKCQVYADRIYAPPAPL HVFTAPWPFSMWGMDVIGLITPKASNGHRFILVAIDYFTKWVEAASYANVTQKVVCKF IQKEIICRYGLPERIITDNASNLNGAMVKDVCTKFKIKHHNSTTYRPKMNGAVEAANK NIKKIVEKMTEVYKDWHEKLPFALHAYRTSVRTSIGATPYSLVYGAEAVLPVEVEIPS LRVLMETELEDAEWVRSRYEQLNLIEEKRLAALCHGQMYQRRMMRAYEKKVHPRQFRE GELVLKRILPNQTDFRGKWMPNWEGPYVVKKAFSGGALILADMDGGDLPNPINADAVK KYYA" mobile_element 4329004..4331279 /note="source:INTACT52F_F339_scaffold_1-int 1 2272" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4329089..4329715 /locus_tag="TCM_012621" /note="dbxref CacaoGD:Thecc1EG012621" mRNA 4329089..4329715 /locus_tag="TCM_012621" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc4373t3_G2" CDS 4329090..4329293 /locus_tag="TCM_012621" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21232.1" /translation="MAGRTPSHPFAVPSPTHYAGWGFWPPTPGVPEPPSPGCPIFWTT RLFKSTCNLQRKGGDEKTKNHSS" mobile_element 4331890..4333988 /note="source:INTACT146_F154_scaffold_7-int 460 2545" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4333989..4335374 /note="source:CACAO_M_E69760_F9_scaffold_9 1 1432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4335374..4338783 /note="source:INTACT146_F154_scaffold_7-int 2541 5925" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4342672..4344100 /note="source:CACAO_M_E34142_F67_scaffold_4 3675 5115" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4342876..4344305) /note="source:INTACT375F_F353_scaffold_3-int 1329 2689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4345194..4345257) /note="source:INTACT375F_F353_scaffold_3-int 363 391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4345258..4350213 /note="source:INTACT1391F_F387_scaffold_8-int 1 4706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4350211..4358803) /note="source:INTACT1313F_F380_scaffold_7-int 1402 9906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4359693..4359978) /note="source:INTACT1313F_F380_scaffold_7-int 11601 11864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4362849..4362971 /note="source:INTACT414_F210_scaffold_5-int 1 123" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4362978..4365348 /note="source:CACAO_M_E12289_F140_scaffold_3 1 2371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4365349..4367301) /note="source:scaffold_6_CACTA_0709 4046 6009" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4368693..4371162) /note="source:CACAO_M_E69938_F9_scaffold_9 3940 6354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4370919..4371384 /note="source:CACAO_M_E58877_F5_scaffold_9 19898 20319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4371318..4371634) /note="source:CACAO_M_E44210_F112_scaffold_5 10000 10313" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4371478..4371687) /note="source:INTACT375F_F353_scaffold_3-int 14452 14648" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4372512..4380511) /locus_tag="TCM_012627" /note="dbxref CacaoGD:Thecc1EG012627" mRNA complement(join(4372512..4373708,4374507..4374646, 4374770..4374914,4376424..4376846,4377629..4377815, 4378899..4379060,4379786..4380511)) /locus_tag="TCM_012627" /product="Transducin family protein / WD-40 repeat family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29924.m000096" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010832t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s04660.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc145t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1906t1" mRNA complement(join(4372519..4373708,4374507..4374914, 4375667..4375726,4376424..4376846,4377629..4377815, 4378899..4379060,4379786..4380301)) /locus_tag="TCM_012627" /product="Transducin family protein / WD-40 repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29924.m000096" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010832t6" /inference="similar to AA sequence:Phytozome:POPTR_0012s04660.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1906t1" CDS complement(join(4373451..4373708,4374507..4374646, 4374770..4374914,4376424..4376846,4377629..4377815, 4378899..4379060,4379786..4380177)) /locus_tag="TCM_012627" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010832t2" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein isoform 2" /protein_id="EOY21234.1" /db_xref="Phytozome:POPTR_0012s04660.1" /db_xref="TAIR:AT3G18060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7LLQ1" /translation="MPELAETYACVPSTERGRGILISGDPKSNRVLYTNGRSVIILDL NNPLNVAIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGTHNDHVLKKEFKVLSGR IDDLQWSPDGMRIVASGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCSFKPTRPFR IVTCGEDFLVNFYEGPPFRFKLSHRDHSNFVNCVRFSPDGTKFITVSSDKKGIIFDGK SGEKIGELSSEDAHKGSIYAVSWSPDGTQVLTVSADKTAKVWEISEDGNGKLKKKLTC SGSGGVDDMLVGCLWQNDHLVTVSLGGTISIFSASNLEKAPLQLSGHMKNVTSLAVLK SDPKCILSSSYDGLIVKWIQGVGYSGKLQRKENSQIKCFAAADEEIVTSGFDNKIWRI SLRGDQCGDADSVDIGSQPKDLSLALLSPELALITTDSGVVMLRGDTLKEEAVLEKHR GALTVIRYSPDFSLFASGDANREAIVWDRVSREVKVKNMLYHTARINCLAWSPNSSMV ATGSLDTCVIIYEVDKPASSRMTIKGAHLGGVYGLAFTDEYSVVSSGEDACVRVWKLT PQ" CDS complement(join(4373451..4373708,4374507..4374914, 4375667..4375726,4376424..4376846,4377629..4377815, 4378899..4379060,4379786..4380177)) /locus_tag="TCM_012627" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010832t6" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein isoform 1" /protein_id="EOY21233.1" /db_xref="Phytozome:POPTR_0012s04660.1" /db_xref="TAIR:AT3G18060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7LLQ1" /translation="MPELAETYACVPSTERGRGILISGDPKSNRVLYTNGRSVIILDL NNPLNVAIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGTHNDHVLKKEFKVLSGR IDDLQWSPDGMRIVASGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCSFKPTRPFR IVTCGEDFLVNFYEGPPFRFKLSHRDHSNFVNCVRFSPDGTKFITVSSDKKGIIFDGK SGEKIGELSSEDAHKGSIYAVSWSPDGTQVLTVSADKTAKVWEISEDGNGKLKKKLTC SGSGGVDDMLVGCLWQNDHLVTVSLGGTISIFSASNLEKAPLQLSGHMKNVTSLAVLK SDPKCILSSSYDGLIVKWIQGVGYSGKLQRKENSQIKCFAAADEEIVTSGFDNKSFFS SRVTMNMFILILVEFEIWRISLRGDQCGDADSVDIGSQPKDLSLALLSPELALITTDS GVVMLRGTKVVSTLNLGFAVTASAVAPDGSEAIIGGQDGKLRIYCITGDTLKEEAVLE KHRGALTVIRYSPDFSLFASGDANREAIVWDRVSREVKVKNMLYHTARINCLAWSPNS SMVATGSLDTCVIIYEVDKPASSRMTIKGAHLGGVYGLAFTDEYSVVSSGEDACVRVW KLTPQ" mobile_element 4387169..4390104 /note="source:CACAO_M_E42408_F72_scaffold_5 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4390105..4390193) /note="source:INTACT357_F72_scaffold_9-int 1240 1334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4390106..4391442 /note="source:CACAO_M_E12706_F328_scaffold_3 1815 3153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4395856..4395904) /note="source:INTACT698_F303_scaffold_9-int 3269 3324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4403878..4406494 /note="source:CACAO_M_E12292_F53_scaffold_3 1 2617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4411109..4411134 /note="source:CACAO_M_S_E884_F44_scaffold_1 5733 5758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4411127..4412572 /note="source:CACAO_M_S_E86138_F33_scaffold_7 5620 7144" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4412570..4418335 /note="source:CACAO_M_E4238_F33_scaffold_2 5201 10993" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4418336..4418544) /note="source:CACAO_M_S_E4911_F76_scaffold_1 40 233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4423724..4423972) /note="source:scaffold_8_CACTA_0859 16219 16468" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4424417..4425571 /note="source:scaffold_8_CACTA_0859 494 1628" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4428279..4429969 /note="source:CACAO_M_S_E4413_F3_scaffold_1 16872 18561" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4431301..4432855 /locus_tag="TCM_012631" /note="dbxref CacaoGD:Thecc1EG012631" mRNA join(4431301..4431738,4431859..4431988,4432413..4432855) /locus_tag="TCM_012631" /product="R2R3 MYB C2 repressor 2 protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008401001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019261t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008401001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13795t00001" CDS join(4431504..4431738,4431859..4431988,4432413..4432761) /locus_tag="TCM_012631" /note="paralog of Thecc1EG019261t1" /codon_start=1 /product="R2R3 MYB C2 repressor 2 protein" /protein_id="EOY21235.1" /db_xref="Phytozome:GSVIVT01008401001" /db_xref="TAIR:AT1G22640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C8M7" /translation="MPIPSLAFSPDFGPLLSSDLICYLHWGFSLFFLFPMRKPCCEKK ETNKGAWSKLEDQKLIDYIQKHGEGCWRYLPQAAGLLRCGKSCRLRWVNYLRPDLKRG NFGEDEEELIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNTHIKRKLLQKGIDPNNR KLVLSSISIAKSKMSNESNSSTVDSGSDDSNQDMKFASGSESNTMSSLPDLNLDLTIA PPPPLPLMEERQLINLDSS" mobile_element 4434006..4449507 /note="source:INTACT230_F178_scaffold_3-int 1 15502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4449520..4450855) /note="source:INTACT135F_F90_scaffold_2-int 12855 14015" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4451767..4451808) /note="source:CACAO_M_E73087_F12_scaffold_10 9041 9082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4453321..4459665 /note="source:CACAO_M_E12297_F14_scaffold_3 1 6345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4466826..4467775 /note="source:CACAO_M_E12297_F14_scaffold_3 13128 14077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4467876..4468189 /note="source:CACAO_M_E12297_F14_scaffold_3 14078 14391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4474783..4482146 /note="source:CACAO_M_E12297_F14_scaffold_3 14392 21755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4485272..4485696) /note="source:INTACT20_F8_scaffold_7-int 11940 12375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4485797..4486419) /note="source:INTACT20_F8_scaffold_7-int 11604 12228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4486421..4497335) /note="source:INTACT20_F8_scaffold_7-int 1133 12375" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4496406..4516441 /locus_tag="TCM_012637" /note="dbxref CacaoGD:Thecc1EG012637" mRNA join(4496406..4496571,4507990..4508329,4509196..4509810, 4512008..4512203,4512321..4512540,4513442..4513652, 4514982..4515347,4515516..4516441) /locus_tag="TCM_012637" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033122t1" /inference="similar to AA sequence:Phytozome:Glyma18g33480.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" mobile_element complement(4506250..4507132) /note="source:CACAO_M_E53072_F33_scaffold_8 2069 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4507119..4507771) /note="source:scaffold_4_CACTA_0503 494 1148" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4507884..4509809) /note="source:scaffold_4_CACTA_0503 3236 5160" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4509577..4509838) /note="source:CACAO_on_S_E390_scaffold_9 15132 15391" /mobile_element_type="transposon:TIR/Mutator" CDS join(4509694..4509810,4512008..4512203,4512321..4512540, 4513442..4513652,4514982..4515347,4515516..4516310) /locus_tag="TCM_012637" /note="paralog of Thecc1EG033122t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21236.1" /db_xref="Phytozome:Glyma18g33480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BR83" /translation="MRKLMLSLVGFRSAFGVMSAYRDVAAVVTGPMGVPGRDKIIMPP RRGLPPFSRLVGRGRGRPPHNQPDPVEGKSTASTFRAAPAAEPTETPPHPPHPPPLTN IPVPPPLPPVPPPVPDVSIFKKLEEARQLGCISFTGDLDATAAKDWIIQVLKTLNDMR LEDDMKLMVATRLLEKSPEAHVLIDSGSDRSYATTTFASFSDRNLSPLEEEIVVHTPL GEQLIRNTCYRDCGIRVGEEEFKANLIPLELKKHEMNYPTQDLELAAVVLALKIWRHY LYGERCQIFTDHKSLKYLLTQKELNLRQRRWLELIKDYDLVIDYHPGKANVVADALSH KSSSSLATLRSSYFSMLLEMKSLGIQLNNDEDGTLLDNQLRQVILEEAHSSAYVLHLR STKMYRTIKESYWWSGIKRDIAEFVAKCLTCQQIKAEHQKPSSTLQPLPIPEWKWEHV TMDFVLGLSRTQSGKDAIWVIVYRLTKSAHFLAIHSTYSIEKLARLYIDEIVRLHGIL VSIVLDRDPRFTSRFWPKFQEVLGTKLRFSTACHPQTDGQSERTIQTLEDMLRACVID FTGSWDRHLPLVEFAYNNSFQSSIGMAPYKALYGRKCRTPLCWDEVDERKLVNVELID LTNDKIKVIR" mobile_element complement(4509817..4511872) /note="source:CACAO_M_E57385_F197_scaffold_9 1792 3848" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4510200..4518024 /note="source:CACAO_M_S_E84840_F51_scaffold_7 1394 9242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4516936..4518970) /note="source:CACAO_M_E57385_F197_scaffold_9 2688 4720" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4518969..4521934) /note="source:CACAO_M_S_E122136_F76_scaffold_10 1326 4279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4521934..4522825) /note="source:CACAO_M_E57385_F197_scaffold_9 1805 2692" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(4523065..4531259) /locus_tag="TCM_012639" /note="dbxref CacaoGD:Thecc1EG012639" mRNA complement(join(4523065..4523146,4523746..4523837, 4525357..4525425,4525584..4525714,4526546..4526651, 4528098..4528217,4529135..4529216,4529362..4529377, 4529463..4529544,4530900..4531259)) /locus_tag="TCM_012639" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(4523090..4523146,4523746..4523837, 4525357..4525425,4525584..4525714,4526546..4526651, 4528098..4528217,4529135..4529216,4529362..4529377, 4529463..4529544,4530900..4531029)) /locus_tag="TCM_012639" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21237.1" /translation="MKQPYIFLNMVIPGSRSPKQNIDVFLQPRIDELKVLWDKSVVTC QYLEEDEFYAIKLYVLMNCKEILPYIKMFNNMVAQHANQIDSCLGDMSHGPSHMAMCY KGNSAMQPPIPPPSSTPPLVKPSMPPQSSRPLMSTLTSTLVSYQEMKSDVKELNTNVY DTKIIMKVKLVRLPDSVGSIEENFWLQKSGLIWVVEGERNKKFFHMMVWKMRIRNHIF KINDSSTLQEVRNAVFDIDKDRIAVPDAFLLEFMVEDIADIPIEKSCDDVVYWVLHQM NFSLETNINENFRQKICR" mobile_element 4536016..4540586 /note="source:CACAO_PIF_E62_scaffold_2 7097 11713" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4540573..4543734) /note="source:INTACT298_F14_scaffold_10-int 3099 6290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4543735..4544429 /note="source:CACAO_Mutator_E592_scaffold_3 8773 9435" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4544642..4545050 /note="source:CACAO_PIF_E62_scaffold_2 13534 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4545046..4545374 /note="source:CACAO_PIF_E62_scaffold_2 16126 16456" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4546086..4547506 /note="source:CACAO_M_E12315_F9_scaffold_3 1 1421" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4547507..4547809 /note="source:CACAO_Mutator_E592_scaffold_3 18962 19270" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4547813..4549109 /note="source:CACAO_M_E12316_F15_scaffold_3 1 1297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4549980..4550914 /note="source:CACAO_M_E12316_F15_scaffold_3 1298 2232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4550915..4550970 /note="source:CACAO_Mutator_E592_scaffold_3 19269 19323" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4550962..4551230 /note="source:CACAO_Mutator_E592_scaffold_3 19694 19912" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4551219..4551843 /note="source:CACAO_Mutator_E592_scaffold_3 19697 20361" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4552439..4552791) /note="source:CACAO_M_E980_F115_scaffold_1 2739 3089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4552764..4552788) /note="source:scaffold_8_CACTA_0859 15405 15426" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4552789..4554892) /note="source:CACAO_M_E9776_F15_scaffold_2 771 2876" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4554893..4555189 /note="source:CACAO_M_E57195_F15_scaffold_8 1 291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4558901..4559062) /note="source:CACAO_M_E59744_F15_scaffold_9 7561 7725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4559033..4560038 /note="source:CACAO_M_E35783_F15_scaffold_5 2099 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4560039..4561612) /note="source:CACAO_M_E35241_F115_scaffold_5 1198 2776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4561713..4562894 /note="source:CACAO_M_E35265_F115_scaffold_5 1939 3121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4564059..4564798) /note="source:CACAO_M_S_E2040_F42_scaffold_1 2378 3117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4564900..4565175) /note="source:CACAO_M_S_E2040_F42_scaffold_1 2087 2365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4565276..4565453) /note="source:CACAO_M_E56778_F42_scaffold_8 3750 3927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4566032..4567833) /note="source:CACAO_M_S_E99715_F4_scaffold_9 6 1866" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4566282..4569742 /note="source:CACAO_M_E84368_F4_scaffold_10 281 3778" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4569783..4569939 /note="source:INTACT453_F4_scaffold_9-int 3690 3849" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4569908..4570826 /note="source:CACAO_M_E14113_F106_scaffold_3 6289 7213" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4572906..4574532) /note="source:CACAO_M_E59172_F79_scaffold_9 1148 2776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4574533..4577453 /note="source:CACAO_M_E57385_F197_scaffold_9 1805 4720" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4577454..4580399) /note="source:INTACT469_F79_scaffold_2-int 2766 5734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4580551..4583329 /note="source:CACAO_M_E3381_F79_scaffold_1 1 2775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4584762..4585187 /note="source:CACAO_M_E14113_F106_scaffold_3 7205 7630" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4585456..4585633 /note="source:CACAO_M_E14113_F106_scaffold_3 10503 10683" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4585624..4586599 /note="source:scaffold_2_CACTA_0276 5427 6402" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4585804..4588396) /note="source:CACAO_M_E50108_F4_scaffold_7 316 2930" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4588376..4588626 /note="source:scaffold_2_CACTA_0276 10052 10301" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4588603..4588626 /note="source:CACAO_M_E53587_F207_scaffold_8 8536 8562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4588627..4591417) /note="source:CACAO_M_E73030_F79_scaffold_10 1 2768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4593031..4593255 /note="source:CACAO_Again_on_E100_scaffold_4 2 263" /mobile_element_type="transposon:TIR/hAT" mobile_element 4593582..4593821 /note="source:CACAO_Again_on_E100_scaffold_4 768 1020" /mobile_element_type="transposon:TIR/hAT" mobile_element 4593817..4594154 /note="source:CACAO_Again_on_E100_scaffold_4 4463 4802" /mobile_element_type="transposon:TIR/hAT" gene 4595787..4596467 /locus_tag="TCM_012643" /note="dbxref CacaoGD:Thecc1EG012643" mRNA 4595787..4596467 /locus_tag="TCM_012643" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012802t1" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.80 coverage" CDS 4595963..4596175 /locus_tag="TCM_012643" /note="paralog of Thecc1EG012802t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21238.1" /translation="MSICNKFIFFCFCAMLVGSVLIGDTNANKVIGKGAMAANRELPC KGGNCLPQPSNPENRGCETIERCRHS" mobile_element 4596906..4599908 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3455 6463" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4606165..4611645) /locus_tag="TCM_012646" /note="dbxref CacaoGD:Thecc1EG012646" mRNA complement(join(4606165..4606168,4608034..4608373, 4608962..4609475,4611480..4611645)) /locus_tag="TCM_012646" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012635t1" /inference="similar to AA sequence:Phytozome:Glyma18g44710.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(4609089..4609364) /locus_tag="TCM_012646" /note="paralog of Thecc1EG012635t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21239.1" /db_xref="Phytozome:Glyma18g44710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BFS9" /translation="MGTFISSFNNRYILVAVDYVSKWVEALALPTNDVKVVLKFLKKN IFIRFGTPTVIVNDECSHFCNKHFTALLTKFGVSHKIAIAYHPQTNG" mobile_element complement(4610431..4611021) /note="source:CACAO_M_E22484_F328_scaffold_3 13650 14253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4611025..4621250 /note="source:CACAO_M_E12329_F82_scaffold_3 1 10226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4621251..4621317 /note="source:CACAO_M_E14113_F106_scaffold_3 3803 3865" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4621337..4621641) /note="source:CACAO_M_E5627_F4_scaffold_2 5432 5740" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4621513..4623210 /note="source:CACAO_M_E42641_F14_scaffold_5 10907 12668" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4630384..4632107 /locus_tag="TCM_012649" /note="dbxref CacaoGD:Thecc1EG012649" mRNA join(4630384..4630468,4631784..4632107) /locus_tag="TCM_012649" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012802t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.74 coverage" CDS 4631815..4632027 /locus_tag="TCM_012649" /note="paralog of Thecc1EG012802t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21240.1" /translation="MSMCKKFMLFCFCAMLVGLVLIREVNANEPIGYGAMAGGRQPPC KGDKCLPPPSNPGSRGCESIEKCRHP" mobile_element 4632189..4635307 /note="source:scaffold_1_CACTA_0010 1 3220" /mobile_element_type="transposon:TIR/CACTA" gene 4633061..4639736 /locus_tag="TCM_012650" /note="dbxref CacaoGD:Thecc1EG012650" mRNA join(4633061..4633100,4633386..4633473,4633613..4633643, 4634262..4634372,4634818..4634917,4635014..4635048, 4635152..4635191,4638870..4639203,4639522..4639736) /locus_tag="TCM_012650" /product="GATA type zinc finger transcription factor family protein" /inference="alignment:exonerate- protein:2:TAIR:AT3G55770.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042613t2" /inference="similar to AA sequence:ricco:29610.m000403" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1867t3" CDS join(4633638..4633643,4634262..4634372,4634818..4634917, 4635014..4635048,4635152..4635191,4638870..4638883) /locus_tag="TCM_012650" /note="dbxref ricco:29610.m000403; paralog of Thecc1EG042613t2" /codon_start=1 /product="GATA type zinc finger transcription factor family protein" /protein_id="EOY21241.1" /db_xref="TAIR:AT3G55770.6" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PII9" /translation="MKKCKACEKTVYPVELLSADGLPYHKSCFKCSHCKGTLKLGNYS SMEGVLYCKPHFEQLFKETGNFNKNFQSPVESAEKLTSELHFAFANASSLIIPNGGS" mobile_element 4635308..4638638 /note="source:CACAO_M_E12330_F85_scaffold_3 1 3331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4638639..4640046 /note="source:scaffold_1_CACTA_0010 3216 4602" /mobile_element_type="transposon:TIR/CACTA" gene 4640927..4641851 /locus_tag="TCM_012652" /note="dbxref CacaoGD:Thecc1EG012652" mRNA 4640927..4641851 /locus_tag="TCM_012652" /product="5'-3' exoribonuclease 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029930001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034205t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400006645" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS 4641206..4641775 /locus_tag="TCM_012652" /note="paralog of Thecc1EG034205t1" /codon_start=1 /product="5'-3' exoribonuclease 3" /protein_id="EOY21242.1" /db_xref="Phytozome:PGSC0003DMP400006645" /db_xref="TAIR:AT1G75660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FQ03" /translation="MKRCNPIQSRFRLPGFNPNTHHCLYGLDADLIMLASATHEVHFS MLREVVLTPGRDKCFLCGQMGHVAADCEGKAKRTAGEFNEKGDGKAAAKKPYQYLNIW TLREYLEYKMRIPNLHFQIDLERVVDDFIFMCFFIGNDFLPHMPTLEIREGAINLLMA VYKKELMGLVMDDMLKIRSGKKIKNFITK" mobile_element 4641702..4644488 /note="source:INTACT10_F4_scaffold_6-int 1 2793" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4644489..4645224 /note="source:CACAO_M_E22812_F323_scaffold_3 1 735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4646196..4648051 /note="source:CACAO_M_E5886_F323_scaffold_2 870 2721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4651274..4651827 /note="source:INTACT646F_F95_scaffold_5-int 10265 10818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4652452..4652799 /note="source:CACAO_M_E12225_F323_scaffold_3 449 796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4653056..4653432) /note="source:CACAO_M_E52518_F323_scaffold_7 2013 2389" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4690052..4690179) /note="source:CACAO_M_E49857_F85_scaffold_7 4059 4173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4692872..4693006) /note="source:INTACT414_F210_scaffold_5-int 6278 6410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4692990..4693010 /note="source:CACAO_M_E22484_F328_scaffold_3 4015 4029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4693011..4693193) /note="source:CACAO_M_E34069_F80_scaffold_4 2748 2929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4694018..4694235 /note="source:CACAO_M_E3144_F80_scaffold_1 260 477" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4696937..4697770 /note="source:CACAO_M_E69760_F9_scaffold_9 8814 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4697756..4699186) /note="source:CACAO_M_E58905_F86_scaffold_9 1 1439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4702010..4704357 /note="source:CACAO_M_E14555_F143_scaffold_3 1 2349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4704358..4713773 /note="source:INTACT470_F80_scaffold_3-int 1 9416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4713775..4714379 /note="source:CACAO_M_E14555_F143_scaffold_3 2346 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4714403..4715210) /note="source:INTACT414_F210_scaffold_5-int 5176 5962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4715823..4718440 /note="source:CACAO_M_S_E17136_F335_scaffold_3 1 2618" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4720121..4721981 /note="source:INTACT667_F51_scaffold_5-int 5761 9547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4721982..4727768) /note="source:INTACT215_F33_scaffold_4-int 5212 10994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4727869..4729725 /note="source:INTACT31_F114_scaffold_8-int 1393 3248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4732985..4734226 /note="source:INTACT667_F51_scaffold_5-int 1855 3093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4734861..4737622 /note="source:CACAO_M_E12337_F79_scaffold_3 1 2762" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4738453..4742295) /locus_tag="TCM_012656" /note="dbxref CacaoGD:Thecc1EG012656" mRNA complement(join(4738453..4739316,4742167..4742295)) /locus_tag="TCM_012656" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023008t1" /note="quality class is medium-utrpoor, express is none, homology is paralog strong, intron is none, protein is utrpoor_complete" CDS complement(4738495..4738740) /locus_tag="TCM_012656" /note="paralog of Thecc1EG023008t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21243.1" /translation="MHNKELSDVPSFPSFSETKFTEIEVHPKIRHRRHSDIEVSIDKI LSFASNKAVDMGKNDEDSDEDAISVNFAASWERERYY" mobile_element 4745924..4746501 /note="source:INTACT699_F86_scaffold_3-int 6486 7063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4752607..4752970 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17254 17579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4752996..4755125 /note="source:CACAO_M_E30084_F86_scaffold_4 1 2128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4755124..4756367 /note="source:CACAO_M_S_E100312_F82_scaffold_9 3913 5164" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4757616..4757916 /note="source:INTACT543_F86_scaffold_5-int 9144 9404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4757917..4758672) /note="source:CACAO_M_S_E68170_F83_scaffold_6 31 789" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4758868..4759889 /note="source:CACAO_M_E4863_F82_scaffold_2 366 1382" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4762176..4762343 /note="source:CACAO_M_E51863_F15_scaffold_7 2827 2996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4768941..4769098) /note="source:INTACT85_F9_scaffold_4-int 1714 1875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4770448..4771003) /note="source:INTACT642F_F365_scaffold_5-int 19547 20086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4771004..4772539 /note="source:CACAO_M_E52617_F328_scaffold_7 19334 20884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4772535..4772696) /note="source:CACAO_M_E49759_F82_scaffold_7 2852 3013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4773503..4774227) /note="source:CACAO_M_S_E100312_F82_scaffold_9 5335 6059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4786489..4786629) /note="source:CACAO_M_E53587_F207_scaffold_8 12592 12732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4787092..4790582 /note="source:CACAO_M_S_E38262_F319_scaffold_4 9760 13255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4790404..4792183) /note="source:CACAO_M_S_E14649_F328_scaffold_2 8521 11435" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4792194..4792477) /note="source:INTACT642F_F365_scaffold_5-int 1 291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4792505..4795489 /note="source:CACAO_M_E12347_F245_scaffold_3 1 2985" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4799857..4801037 /locus_tag="TCM_012658" /note="dbxref CacaoGD:Thecc1EG012658" mRNA 4799857..4801037 /locus_tag="TCM_012658" /product="21 kDa seed protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012673t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s03430.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS 4800153..4800818 /locus_tag="TCM_012658" /note="paralog of Thecc1EG012673t1" /codon_start=1 /product="21 kDa seed protein" /protein_id="EOY21244.1" /db_xref="Phytozome:POPTR_0017s03430.1" /db_xref="TAIR:AT1G17860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P32765" /translation="MKTATAVVLLLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQ YYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVST DVNIEFVPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAG VLGYKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLALSDNEWAWMFKKASKTIKQVVN AKH" gene 4801832..4807711 /locus_tag="TCM_012659" /note="dbxref CacaoGD:Thecc1EG012659" mRNA join(4801832..4801925,4802146..4802736,4802838..4802993, 4803905..4804358,4805461..4806064,4806419..4806564, 4806637..4806759,4806935..4807711) /locus_tag="TCM_012659" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031268t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS join(4802914..4802993,4803905..4804358,4805461..4806064, 4806419..4806564,4806637..4806759,4806935..4807597) /locus_tag="TCM_012659" /note="paralog of Thecc1EG031268t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21245.1" /translation="MKVTPEPCHLFSVTFTVVQVKQLFYSRQLFPSSSMPRTRVPPKI NYGEPGRVATRKKTTAHKRKNSDSKLVAPKKIRVGKSGEVPPVPENWEDEIIRERGED RFWEEVRARQVDEHPSESVGYDWNRLCSETPPHRRSGIPGPSILKFRFERGEFPLSAT KLGSNSQFVHGWDEWVTKVARFSNWIGIFYKKFNAKGIEIDSPEYPDHKYELVALIIF WLARHVLPGCPDDGISSAVVPLAIKIVKGIRFPLASLYLGSLYKRLDLYQLKIIESAG RYKVLTYVDVSFIQMCLWERFGTCAPMPNAYPFASFSVNNLLSRNNYRAWAWHDRLQR GNVLEVMDVTKEFNPRPYVQPINGFGDPAIYYDLHPLQSGRMRSRARLYTPHVSNNDV SLRLIPLRKKKCMTEEEDTAVPAPIRQTKDKHAYRKGESTTRVELNSVEEEETSEVET EEESCDSERSDESDDESIDIVLTPQAIRDEVVSDTETIPAGEVVPEVTPNIEVIEDVR IDTDNVRAIPMTPRAYSSPVPEHRDTSSVSGTQIAHTEQSSKKVDFHGFQVSLEYVTY LEQVFNIEGEFWSTSFVKNVDVICLMMDVLGRALVISHAPLMSTSPEELQQMLQDFDD ACNFGFKLECLNDCRSKAKIFLNKSSLEDELEDIAAKITSLKKREAEVREQLDVFANN NSSLWNM" mobile_element 4809537..4810283 /note="source:INTACT179F_F20_scaffold_3-int 6018 6764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4810384..4812854 /note="source:INTACT179F_F20_scaffold_3-int 6765 9235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4812955..4813413 /note="source:INTACT179F_F20_scaffold_3-int 9236 9694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4813514..4815656 /note="source:INTACT179F_F20_scaffold_3-int 9695 11837" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4817431..4826902 /locus_tag="TCM_012661" /note="dbxref CacaoGD:Thecc1EG012661" mRNA join(4817431..4817715,4824375..4825455,4825567..4825776, 4825929..4826902) /locus_tag="TCM_012661" /product="Gag protease polyprotein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019584t1" /inference="similar to AA sequence:Phytozome:POPTR_1126s00200.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc7287t2_G3" mobile_element 4819714..4820239 /note="source:CACAO_M_E56826_F244_scaffold_8 4226 4751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4824166..4825795 /note="source:INTACT615_F273_scaffold_2-int 2975 5149" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(4824381..4825455,4825567..4825776,4825929..4825945) /locus_tag="TCM_012661" /note="paralog of Thecc1EG019584t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY21246.1" /db_xref="Phytozome:POPTR_1126s00200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NAU0" /translation="MPPRRGRPPLYRSVGRGRGRARLSQPDPVERESAAPTFRAAPAV EPTEIPPPPPPPTATPGVHAMSLEAVQALAAFLNVIMGQAQASRVPHTVPPAVSPVPP PPPLVPPPVPDVSISKKLKEARQLGCTSFVGDLDATAAKDWITQVTETFVDMKLDDDM KLMVATRLLEKRARTWWSSVKSRSITSLTWIDFLQEFDGQYYTYFHQKEKKREFLSLQ QGNLTIEEYEARFNELMSYVPDLVKSEQDQASYFEEGLRNEIRERMTVTGREPHKEVV QMALRAEKLTNENRRMRAEFAKKRNPNVSSSQLPKRGKDTFASESTVSVPVISPRPPL SQLQQRPPRFSRSGMSSTSEKSFGGRATVVAPSPLTHTDMQRRDSSGVHPRQGVAVRS EMGSNTPAQPPLRPLTRSSTRVFAVTEDEARVRSGEKLKNT" mobile_element complement(4825796..4826887) /note="source:scaffold_4_CACTA_0503 564 1658" /mobile_element_type="transposon:TIR/CACTA" gene complement(4825890..4851619) /locus_tag="TCM_012662" /note="dbxref CacaoGD:Thecc1EG012662" mRNA complement(join(4825890..4826075,4841843..4841862, 4841966..4842734,4851364..4851619)) /locus_tag="TCM_012662" /product="21 kDa seed protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400017933" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012673t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012936001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6129t44; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6129t42" mobile_element complement(4826324..4829280) /note="source:CACAO_M_E69760_F9_scaffold_9 6707 9649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4836683..4836723 /note="source:CACAO_M_E52467_F164_scaffold_7 1 41" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(4841986..4842645) /locus_tag="TCM_012662" /note="paralog of Thecc1EG012673t1" /codon_start=1 /product="21 kDa seed protein" /protein_id="EOY21247.1" /db_xref="Phytozome:GSVIVT01012936001" /db_xref="TAIR:AT1G17860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P32765" /translation="MKTATAVVLLLFAFTSKSYFFGVARADESPVLDSDGDELRTGVE YYVVSAIWGAGGGGLALGRVTGQSCPEIVVQRGSDDDGLPVIFSNADGKDGVVRLSTD VNIEFVPIRDRLCLTSTVWKLDDYDPSTGKWWVTTDGVKGDPGHNTLTSWFKIEDAGA LGYKFRFCPSVCDSCIHLCNDFGRHGHDGQVRLALSENGWPWIFKKARNSIKQVVNAK H" mobile_element complement(4845983..4849040) /note="source:CACAO_M_E53305_F328_scaffold_8 147 3193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4850933..4852245) /note="source:scaffold_4_CACTA_0498 4328 5640" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4852346..4853812 /note="source:CACAO_M_E22900_F87_scaffold_3 2808 4274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4860080..4860599 /note="source:scaffold_4_CACTA_0503 611 1130" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4860598..4862012 /note="source:CACAO_M_E11669_F244_scaffold_2 519 1938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4862789..4864024) /note="source:INTACT615_F273_scaffold_2-int 3954 5192" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4864125..4866878 /note="source:scaffold_4_CACTA_0503 2291 5069" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4866979..4868089 /note="source:scaffold_4_CACTA_0503 5090 6187" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4869449..4871557) /note="source:CACAO_Mutator_E1149_scaffold_5 355 2481" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4871554..4871709 /note="source:CACAO_M_E44899_F328_scaffold_6 3038 3194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4872718..4872796) /note="source:CACAO_M_E59162_F143_scaffold_9 2888 2965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4872789..4873110) /note="source:CACAO_M_E59650_F290_scaffold_9 5102 5423" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4873482..4874301 /note="source:CACAO_M_E22186_F143_scaffold_3 5686 6506" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4875181..4875892) /note="source:CACAO_M_E59650_F290_scaffold_9 3024 3735" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4875857..4878789 /note="source:CACAO_M_E10324_F143_scaffold_2 31 2950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4881164..4881253) /note="source:scaffold_5_CACTA_0596 4246 4338" /mobile_element_type="transposon:TIR/CACTA" gene complement(4884477..4885776) /locus_tag="TCM_012666" /note="dbxref CacaoGD:Thecc1EG012666" mRNA complement(join(4884477..4885461,4885573..4885776)) /locus_tag="TCM_012666" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008694t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage" CDS complement(join(4885134..4885461,4885573..4885712)) /locus_tag="TCM_012666" /note="paralog of Thecc1EG008694t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21248.1" /translation="MRDLITVAHRGDAKVDAKPCGVSISIRGNECLSGRRGGCHEPDG SSGNSPKILGTEEGGEDPIGFRNVQGKAVSARGRCEQDGPQLDRDRCFIGTRLQTICG SMVIVASREHRRVECIPIGHICVKSNHGLLVEGFQTSFCGRSREKSYHLKNKR" mobile_element 4885563..4886453 /note="source:CACAO_M_E35674_F13_scaffold_5 10896 11784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4895384..4895908 /note="source:scaffold_4_CACTA_0498 3152 3676" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4897847..4898626) /note="source:CACAO_M_E49857_F85_scaffold_7 4058 4839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4901493..4901526 /note="source:CACAO_on_S_E390_scaffold_9 12258 12532" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4901527..4901774) /note="source:CACAO_M_E44709_F9_scaffold_6 14762 15009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4902003..4903064) /note="source:CACAO_M_E360_F33_scaffold_1 1418 2478" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4903499..4903867) /note="source:CACAO_M_E33422_F33_scaffold_4 616 984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4903866..4904284 /note="source:CACAO_M_S_E100312_F82_scaffold_9 9551 9962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4905223..4905794) /note="source:scaffold_5_CACTA_0611 1261 1833" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4905795..4906327 /note="source:CACAO_M_E12782_F33_scaffold_3 1 534" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4908151..4909583 /note="source:CACAO_M_S_E31650_F33_scaffold_3 1524 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4909601..4910869) /note="source:CACAO_M_E43916_F9_scaffold_5 6685 7879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4911146..4911764) /note="source:CACAO_M_E44899_F328_scaffold_6 6410 7037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4916361..4916649) /note="source:CACAO_Mutator_E1149_scaffold_5 6661 6932" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4937722..4937953) /note="source:INTACT190_F166_scaffold_7-int 3757 3988" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4941264..4942530) /note="source:CACAO_M_E57385_F197_scaffold_9 3479 4720" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4942528..4944044) /note="source:CACAO_M_E57385_F197_scaffold_9 1805 3340" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4947208..4948607 /note="source:CACAO_M_E3935_F390_scaffold_1 16036 17455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4949395..4959203 /note="source:INTACT19_F111_scaffold_6-int 1354 11080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4959206..4960585 /note="source:CACAO_M_S_E98851_F233_scaffold_8 1 1382" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4960529..4960620) /note="source:CACAO_M_E49559_F88_scaffold_7 7623 7726" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4960727..4960791 /note="source:CACAO_M_E14113_F106_scaffold_3 13806 13870" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4960735..4962181 /note="source:CACAO_M_S_E98851_F233_scaffold_8 1326 2881" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4962182..4964328 /note="source:INTACT19_F111_scaffold_6-int 11078 13224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4964510..4965142 /note="source:INTACT1232F_F375_scaffold_6-int 9175 9807" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4965717..4968665) /note="source:INTACT183F_F349_scaffold_3-int 7832 10754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4970254..4971496 /note="source:CACAO_M_E69286_F86_scaffold_9 1 1242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4972647..4975571 /note="source:CACAO_M_E12371_F86_scaffold_3 1 2925" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4976845..4993230 /locus_tag="TCM_012671" /note="dbxref CacaoGD:Thecc1EG012671" mRNA join(4976845..4977744,4993200..4993230) /locus_tag="TCM_012671" /product="21 kDa seed protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400017946" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012658t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012922001" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13152t00001" CDS 4977014..4977673 /locus_tag="TCM_012671" /note="paralog of Thecc1EG012658t1" /codon_start=1 /product="21 kDa seed protein, putative" /protein_id="EOY21249.1" /db_xref="Phytozome:GSVIVT01012922001" /db_xref="TAIR:AT1G17860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P32765" /translation="MKTTIAAALLLSLFAIQSDFFVVANATNKPVLDTDGEELRTGVE YYVVSALWAAGGGGLALGRSRNQSCPDIVVQRRSELDYGIPVIFSPVKPNDVFIRVST DLIIEFVPLRDSLCLTTAVWKLDDYDQSTGKWWVIAGRVAGDAGPHTFPNWFKIEKNG VFGYKFTYCPSVCDSCTTLCSDIGRYEDNGQIRLGLSDQGWPFVFTKATRAIKQVVGK Q" mobile_element 4985771..4986159 /note="source:CACAO_M_E53388_F15_scaffold_8 3277 3663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4986833..4988061 /note="source:CACAO_M_E53388_F15_scaffold_8 4336 5566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4988530..4988887 /note="source:CACAO_M_E53388_F15_scaffold_8 6013 6378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4990800..4991324) /note="source:scaffold_8_CACTA_0858 14203 14737" /mobile_element_type="transposon:TIR/CACTA" gene 4997392..5008806 /locus_tag="TCM_012672" /note="dbxref CacaoGD:Thecc1EG012672" mRNA join(4997392..4997483,4999599..4999971,5003417..5003469, 5003685..5004653,5008694..5008806) /locus_tag="TCM_012672" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027009t1" /inference="similar to AA sequence:frave:gene16596" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(4999775..4999971,5003417..5003469,5003685..5004610) /locus_tag="TCM_012672" /note="dbxref frave:gene16596; paralog of Thecc1EG027009t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21250.1" /translation="MQRVRSDLSFAGLMKLVEDVVGVNSEIDEIELHALISTPGELSW PIIKDDEDVALILLEQRNVPAVGSGKLMQEPCEVSVDISGVERFSFQPITTEESTCAD DHLYKGRMFSSKAELKRALNMLVIKEKFAIRVKRSCKGCYEVGCKDKACKFSLRATKL LERGEYWQVRTFHKVHTCTVDGLQGRFPTTSAKIIGELISHKLRANGVALRPKNIICE MRVQWGLECLNGKAWQAKEYVERLVFDLSEESFQLLPSYFYMLEQENPNTLTAMATNE AERFKYCFWSYGTCIRGFRDVMRPTVAIDATHLKSRFKGVLFVATCKDENQCVYPVAF GIGIFLKCTSTFISTSTSAFCKDANMYFYIFLKCKLEAFDLFIKYVAFDLFNSSCVA" mobile_element 5000515..5001907 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3497 4917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5002008..5003545) /note="source:CACAO_M_E57385_F197_scaffold_9 1796 3333" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(5005524..5015714) /locus_tag="TCM_012673" /note="dbxref CacaoGD:Thecc1EG012673" mRNA complement(join(5005524..5005766,5009079..5010129, 5013460..5013782,5015390..5015714)) /locus_tag="TCM_012673" /product="21 kDa seed protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400017933.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012662t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012936001" /note="quality class is medium, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5339t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6129t42_G2" CDS complement(5009152..5009811) /locus_tag="TCM_012673" /note="paralog of Thecc1EG012662t1" /codon_start=1 /product="21 kDa seed protein" /protein_id="EOY21251.1" /db_xref="Phytozome:GSVIVT01012936001" /db_xref="TAIR:AT1G17860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P32765" /translation="MKTATAVVLLLFAFTSKSYFFGVARADESPVLDSDGDELRTGVE YYVVSAIWGAGGGGLALGRVTGQSCPEIVVQRGSDDDGLPVIFSNADGKDGVVRLSTD VNIEFVPIRDRLCLTSTVWKLDDYDPSTGKWWVTTDGVKGDPGHNTLTSWFKIENAGA LGYKFRFCPSVCDSCIHLCNDFGRHGHDGQVRLALSENGWPWIFKKARNSIKQVVNAK H" mobile_element complement(5013147..5016207) /note="source:CACAO_M_E53305_F328_scaffold_8 147 3193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5016205..5016533) /note="source:CACAO_M_S_E64023_F13_scaffold_5 19322 19649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5019989..5020956) /note="source:CACAO_M_E43916_F9_scaffold_5 6689 7675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5021262..5024237 /note="source:CACAO_M_E12374_F44_scaffold_3 1 2976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5024380..5026856 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3510 5991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5026834..5026856) /note="source:scaffold_8_CACTA_0859 15405 15428" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5026857..5029961 /note="source:CACAO_M_E12376_F15_scaffold_3 1 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5029962..5030432) /note="source:CACAO_M_E57385_F197_scaffold_9 1805 2275" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5031367..5034452 /note="source:CACAO_M_E44150_F74_scaffold_5 1512 4595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5035456..5036489) /note="source:CACAO_M_E53305_F328_scaffold_8 2141 3193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5036490..5039442 /note="source:CACAO_M_E12380_F33_scaffold_3 1 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5037736..5039443) /note="source:CACAO_M_E12297_F14_scaffold_3 6345 8051" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5039443..5039893) /note="source:CACAO_M_E35811_F12_scaffold_5 6461 6900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5039886..5040027) /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5040112..5043059 /note="source:CACAO_M_E12381_F173_scaffold_3 1 2948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5043062..5043152) /note="source:CACAO_M_E35674_F13_scaffold_5 7429 7514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5043624..5043705) /note="source:INTACT563_F255_scaffold_10-int 1156 1239" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5044531..5044893) /note="source:CACAO_M_E69275_F82_scaffold_9 5 361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5045444..5045760) /note="source:scaffold_8_CACTA_0867 8607 8923" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5045936..5055771) /note="source:scaffold_8_CACTA_0867 419 10476" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5056172..5064999) /note="source:INTACT688_F14_scaffold_11-int 1 8869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5065000..5065077) /note="source:CACAO_M_E36038_F90_scaffold_5 12852 12925" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5065000..5065069 /note="source:CACAO_M_E44503_F22_scaffold_6 1040 1102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5075418..5076106 /note="source:CACAO_M_S_E100312_F82_scaffold_9 4773 5485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5076207..5076541 /note="source:CACAO_M_S_E100312_F82_scaffold_9 5487 5820" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5076946..5077423 /note="source:CACAO_M_E35811_F12_scaffold_5 17167 17644" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5082053..5084282) /locus_tag="TCM_012680" /note="dbxref CacaoGD:Thecc1EG012680" mRNA complement(join(5082053..5083000,5084066..5084282)) /locus_tag="TCM_012680" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(join(5082830..5083000,5084066..5084167)) /locus_tag="TCM_012680" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21252.1" /translation="MKPTLFLFQILSLLASAIPSLLRDKGKKVDAPLKVEAEGKIYDT LVFVVGIESSCDLQCYEKGKEISMETMKIGGERETVVELMARREKG" gene 5084370..5094250 /locus_tag="TCM_012681" /note="dbxref CacaoGD:Thecc1EG012681" mRNA join(5084370..5084449,5093670..5093818,5093895..5094250) /locus_tag="TCM_012681" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" mobile_element 5087296..5088589 /note="source:CACAO_M_E49195_F17_scaffold_6 1 1278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5088579..5088628 /note="source:CACAO_M_E49195_F17_scaffold_6 1471 1520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5090415..5093512 /note="source:CACAO_M_E12385_F15_scaffold_3 1 3098" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(5093690..5093818,5093895..5093975) /locus_tag="TCM_012681" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21253.1" /translation="MRVQPQLTNKPACRQRVLGAHSITRLFARHLVHQYHSGLTGWSS ILDQKTCAPPISPSQDRLWRVYSRS" mobile_element 5094126..5095640 /note="source:CACAO_M_E12386_F85_scaffold_3 1 3314" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5095641..5097439 /note="source:CACAO_M_E42514_F40_scaffold_5 18876 20680" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5102176..5103685) /note="source:INTACT505_F28_scaffold_3-int 12973 14479" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5103823..5128158) /locus_tag="TCM_012684" /note="dbxref CacaoGD:Thecc1EG012684" mRNA complement(join(5103823..5103919,5126908..5127653, 5128056..5128158)) /locus_tag="TCM_012684" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.60 coverage" mobile_element complement(5106888..5106933) /note="source:CACAO_M_E12463_F12_scaffold_3 4568 4613" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5109614..5110093 /note="source:INTACT505_F28_scaffold_3-int 12980 13460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5110095..5114860) /note="source:CACAO_M_S_E66639_F28_scaffold_5 874 5662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5114861..5114980) /note="source:CACAO_M_E65323_F12_scaffold_9 10631 10741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5115160..5115441) /note="source:INTACT505_F28_scaffold_3-int 10758 11046" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5115783..5118785 /note="source:CACAO_M_S_E17202_F7_scaffold_3 1 3003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5118786..5119098) /note="source:INTACT505_F28_scaffold_3-int 2590 2830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5119262..5119443) /note="source:INTACT505_F28_scaffold_3-int 9734 9915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5119459..5122363 /note="source:CACAO_M_E12392_F86_scaffold_3 1 2905" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5122706..5122968) /note="source:INTACT88_F12_scaffold_4-int 11906 12174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5122741..5123388 /note="source:INTACT170_F12_scaffold_5-int 5311 5952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5123292..5123427) /note="source:INTACT88_F12_scaffold_4-int 11469 11617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5123482..5124234) /note="source:CACAO_M_E3248_F5_scaffold_1 1653 2382" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5124212..5125181 /note="source:CACAO_M_S_E98983_F28_scaffold_8 5997 6953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5125183..5126236 /note="source:INTACT505_F28_scaffold_3-int 13458 14482" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(5127176..5127409) /locus_tag="TCM_012684" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21254.1" /translation="MIFGCWLGIFEVDPWSLCGVFFLFGGLQGDGRRCLVLFPRSCSS PKEEFLSHTSAGLIQERQRRKRSSLKHFRLIRS" gene complement(5128205..5133748) /locus_tag="TCM_012687" /note="dbxref CacaoGD:Thecc1EG012687" mRNA complement(join(5128205..5128894,5130415..5130455, 5130579..5130640,5130816..5131253,5133685..5133748)) /locus_tag="TCM_012687" /product="PEBP family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030010t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008404001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5653t3" mRNA complement(join(5128296..5128894,5130415..5130455, 5130579..5130640,5130855..5131105)) /locus_tag="TCM_012687" /product="PEBP (phosphatidylethanolamine-binding protein) family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030010t3" /inference="similar to AA sequence:Phytozome:GSVIVT01008404001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b012260t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5653t3" CDS complement(join(5128674..5128894,5130415..5130455, 5130579..5130640,5130816..5131169)) /locus_tag="TCM_012687" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030010t1" /codon_start=1 /product="PEBP family protein isoform 1" /protein_id="EOY21255.1" /db_xref="Phytozome:GSVIVT01008404001" /db_xref="TAIR:AT1G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E3NYP7" /translation="MPYAWHIRHTNLSHFSPFTPLYKLLLAFLYSTLTPNQTNILISS PLLFALFFSMAVSVDPLVVGRVIGDVVDMFVPTVTMSVYYGSRHVTNGCDIKPSTTIN PPKVSINGHSDELYTLVMTDPDAPSPSEPSMREWVHWIVSDIPGGTNPTRGKEILVYM GPRPPVGIHRYILVLFQQKGPLGQVQQPASRANFSTRLFAQHLNLGQPVATVYFNAQK EPVSRRR" CDS complement(join(5128674..5128894,5130415..5130455, 5130579..5130640,5130855..5131010)) /locus_tag="TCM_012687" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030010t3" /codon_start=1 /product="PEBP (phosphatidylethanolamine-binding protein) family protein isoform 2" /protein_id="EOY21256.1" /db_xref="Phytozome:GSVIVT01008404001" /db_xref="TAIR:AT1G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E3NYP7" /translation="MAVSVDPLVVGRVIGDVVDMFVPTVTMSVYYGSRHVTNGCDIKP STTINPPKVMTDPDAPSPSEPSMREWVHWIVSDIPGGTNPTRGKEILVYMGPRPPVGI HRYILVLFQQKGPLGQVQQPASRANFSTRLFAQHLNLGQPVATVYFNAQKEPVSRRR" mobile_element 5132201..5135141 /note="source:CACAO_M_E12395_F172_scaffold_3 1 2941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5136983..5138104 /note="source:CACAO_M_E4676_F9_scaffold_2 11658 12773" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5143713..5153747 /note="source:CACAO_M_S_E17210_F22_scaffold_3 1 10035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5153748..5155412) /note="source:CACAO_M_E57091_F309_scaffold_8 1674 3336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5164521..5165100) /note="source:CACAO_M_E49857_F85_scaffold_7 14926 15505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5165351..5166295 /note="source:CACAO_M_E12399_F323_scaffold_3 1 945" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5174449..5174660 /note="source:CACAO_M_E34142_F67_scaffold_4 3704 3919" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5174663..5175900 /note="source:INTACT458_F219_scaffold_7-int 406 1577" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5175901..5177117 /note="source:CACAO_M_E34142_F67_scaffold_4 4111 7363" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5176560..5189761 /note="source:INTACT58_F125_scaffold_5-int 2567 15813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5188699..5189969 /note="source:CACAO_M_E34142_F67_scaffold_4 3704 4981" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5189939..5191212 /note="source:INTACT641_F282_scaffold_1-int 6074 7379" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5195786..5197899 /note="source:CACAO_M_E3884_F22_scaffold_1 1 2097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5197887..5197952) /note="source:INTACT19F_F94_scaffold_1-int 6554 6617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5197900..5198444 /note="source:CACAO_M_E52617_F328_scaffold_7 3737 4281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5198546..5198770) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3017 3237" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5198570..5200047 /note="source:CACAO_M_E52239_F256_scaffold_7 20985 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5201232..5201790) /note="source:INTACT1818F_F49_scaffold_11-int 19136 19690" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5202739..5203018) /note="source:scaffold_9_CACTA_0924 5853 6154" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5204537..5205914) /note="source:scaffold_9_CACTA_0924 4471 5859" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5206145..5206209) /note="source:INTACT1818F_F49_scaffold_11-int 5324 5390" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5210647..5211102) /note="source:CACAO_M_E50311_F328_scaffold_7 4790 5235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5211066..5211399 /note="source:CACAO_M_E84908_F12_scaffold_10 2974 3304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5211397..5213450 /note="source:CACAO_M_E50311_F328_scaffold_7 3291 5315" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5214140..5214204) /note="source:CACAO_M_E5899_F5_scaffold_2 20717 20781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5214643..5215005) /note="source:INTACT642F_F365_scaffold_5-int 5910 6271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5216157..5216254) /note="source:scaffold_7_CACTA_0789 8929 9027" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5216447..5217475 /note="source:scaffold_8_CACTA_0859 16513 17532" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5225896..5228994 /note="source:CACAO_M_E12405_F15_scaffold_3 1 3099" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5232383..5234832) /locus_tag="TCM_012698" /note="dbxref CacaoGD:Thecc1EG012698" mRNA complement(join(5232383..5232840,5233689..5234831)) /locus_tag="TCM_012698" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04320.1" /inference="similar to AA sequence:frave:gene09404" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04267t00001" CDS complement(join(5232496..5232840,5233689..5234369)) /locus_tag="TCM_012698" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene09404" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21257.1" /db_xref="TAIR:AT3G18050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSJ9" /translation="MSLNSATFFPLFFYLFFTILLPASFSISNPDPANRQPLPITASP PATIPAFPEQSNVVGCPLDLPEELFHGIKSACGTKNENGITGQLHRSRCCPVLATWLY AAYSATALSGAGRVVPAVAGRTPSYDMPLLPDDSETCVDDLGKALRQKGIELAKPNET CDVVYCYCGIRLHPLSCPEAFSVDQSGNLVGDENVERLEKNCLSSSSNVNGFPGLGGC NKCLKSLHLLNKKNTLNSSKSEDRTTKMRNKDCQLMGLTWLLAKNRTAYIRTVSAVLR AIMMSKAGSDPSSCTLNSDGMPLAVDSSEIYDQSSSVTLYLSQHLSLLALCLLLIHLI VLSIIQV" mRNA complement(join(<5232702..5232831,5233689..5234832)) /locus_tag="TCM_012698" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007897t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s04320.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc44t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc45t5; inference alignment:Newbler:10:TSA:cgbaP1_g04267t00001" CDS complement(join(<5232703..5232831,5233689..5234369)) /locus_tag="TCM_012698" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG007897t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21258.1" /db_xref="Phytozome:POPTR_0015s04320.1" /db_xref="TAIR:AT3G18050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSJ9" /translation="MSLNSATFFPLFFYLFFTILLPASFSISNPDPANRQPLPITASP PATIPAFPEQSNVVGCPLDLPEELFHGIKSACGTKNENGITGQLHRSRCCPVLATWLY AAYSATALSGAGRVVPAVAGRTPSYDMPLLPDDSETCVDDLGKALRQKGIELAKPNET CDVVYCYCGIRLHPLSCPEAFSVDQSGNLVGDENVERLEKNCLSSSSNVNGFPGLGGC NKCLKSLHLKNTLNSSKSEDRTTKMRNKDCQLMGLTWLLAKNRTAYIRTVSA" mRNA complement(join(<5233544..5233572,5233689..5234832)) /locus_tag="TCM_012698" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04320.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s04320.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc44t7; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc45t5; inference alignment:Newbler:10:TSA:cgbaP1_g04267t00001" CDS complement(join(<5233546..5233572,5233689..5234369)) /locus_tag="TCM_012698" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY21259.1" /db_xref="Phytozome:POPTR_0015s04320.1" /db_xref="TAIR:AT3G18050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSJ9" /translation="MSLNSATFFPLFFYLFFTILLPASFSISNPDPANRQPLPITASP PATIPAFPEQSNVVGCPLDLPEELFHGIKSACGTKNENGITGQLHRSRCCPVLATWLY AAYSATALSGAGRVVPAVAGRTPSYDMPLLPDDSETCVDDLGKALRQKGIELAKPNET CDVVYCYCGIRLHPLSCPEAFSVDQSGNLVGDENVERLEKNCLSSSSNVNGFPGLGGC NKCLKSLHLVGDFNFSLF" mobile_element 5244934..5253005 /note="source:CACAO_M_S_E17219_F72_scaffold_3 1 8072" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5256741..5272329) /locus_tag="TCM_012700" /note="dbxref CacaoGD:Thecc1EG012700" mRNA complement(join(5256741..5257279,5257424..5257660, 5265086..5265168,5272254..5272329)) /locus_tag="TCM_012700" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003960t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.12 coverage" mobile_element complement(5256772..5256912) /note="source:INTACT734_F317_scaffold_4-int 4665 4812" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(5257225..5257279,5257424..5257605)) /locus_tag="TCM_012700" /note="paralog of Thecc1EG003960t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21260.1" /translation="MESSWHSSRYDGIYEVTQHMASTQQSKGDCLAKGHMSPLPEGVH LDLKQNNFTNLLNIWESGYGADDQKIFSFALDKS" gene 5261216..5261912 /locus_tag="TCM_012701" /note="dbxref CacaoGD:Thecc1EG012701" mRNA 5261216..5261912 /locus_tag="TCM_012701" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038693t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 5261366..5261728 /locus_tag="TCM_012701" /note="paralog of Thecc1EG038693t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21261.1" /translation="MTLKQEIDLEEPKKEDTKKKGIAFKSLVEEEERSTRSESENEED MVMLVRKFNGFMKKNFRARKPIRRDVPNEEHIREHLICYDCKKQSHTMYECYNNKNIS TKLKKKTIKFIWSNSNDS" mobile_element complement(5268742..5269661) /note="source:INTACT85_F9_scaffold_4-int 559 1456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5270472..5270590 /note="source:CACAO_M_E12463_F12_scaffold_3 4574 4695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5270989..5271135 /note="source:INTACT904F_F49_scaffold_6-int 13770 13932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5270992..5271098) /note="source:CACAO_M_E3884_F22_scaffold_1 13089 13197" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5271444..5271640 /note="source:CACAO_M_E13604_F90_scaffold_3 8601 8798" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5271641..5273825 /note="source:CACAO_M_E22733_F54_scaffold_3 1 2201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5273826..5274142 /note="source:scaffold_6_CACTA_0704 1345 1684" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5273874..5275035 /note="source:CACAO_M_E22953_F359_scaffold_3 1952 3113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5275036..5276552 /note="source:INTACT609_F90_scaffold_2-int 4311 5812" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5276553..5279123) /note="source:CACAO_M_S_E85177_F5_scaffold_7 17613 20246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5279118..5279185 /note="source:INTACT146F_F14_scaffold_2-int 4926 4995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5279186..5281024 /note="source:CACAO_M_S_E17229_F4_scaffold_3 1 1839" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5281025..5281763 /note="source:CACAO_M_E13604_F90_scaffold_3 10437 11159" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(5283074..5300028) /locus_tag="TCM_012703" /note="dbxref CacaoGD:Thecc1EG012703" mRNA complement(join(5283074..5284555,5284727..5284855, 5285903..5286144,5292186..5292337,5292427..5292729, 5299993..5300028)) /locus_tag="TCM_012703" /product="Laccase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041965t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04620.1" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS complement(join(5283450..5284555,5284727..5284855, 5285903..5286144,5292186..5292337,5292427..5292537)) /locus_tag="TCM_012703" /note="paralog of Thecc1EG041965t1" /codon_start=1 /product="Laccase 1" /protein_id="EOY21262.1" /db_xref="Phytozome:POPTR_0012s04620.1" /db_xref="TAIR:AT1G18140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMS3" /translation="MDGFVQHLGFVLVIALLIIAGMLPSSSSETTRRFEFNVEWKKVT RLCHTKQLLTVNGEYPGPTIAVREGDNVEVKVSNGIAKNTTIHWHGIRQFRTGWADGP AYITQCPIRGGQSYTYKFTVEDQRGTLLWHAHHSWQRASVYGAFIIYPRMPYPFSAPI QTEIPVIFGEWWNADVDAVENEMLMFGKGANSSDGYTINGLPGPLYPCSVKDTFMETV ERGKNYLLRIINAALNDELFFAIAKHTLTVVEVDAVYTKPFTTTAIMIAPGQTTTVLL NTNQLPDSTGIFAMAARPYLSSVVPFDNSTTVGFLKYKGASGNFMPPTRLDRLQLYNL PELQDTAFATRFDKKLRSLASSQYPCNVPKKIDKRVITTISLNLQDCPANQTCKGYKG GRFYASMNNFSFVRPQLSMLEAYYHNKTAGVFTSDFPENPPKVFDYAGVDRLTENMNT EFGTKLFRVPHGTYLEIVLQGTNFLHPENHPIHVHGHNFFIVGSGFGNFNVSKDPDKY NLIDPPERNTVGVPMGGWAAIRLKADNPGVWFIHCHLEEHTSWGLAMAFVVENGPLPS QSLLPPPEDLPQC" mobile_element 5284881..5284979 /note="source:INTACT146F_F14_scaffold_2-int 13445 13519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5290661..5290782) /note="source:CACAO_M_S_E99244_F4_scaffold_9 9254 9375" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5293172..5296383 /note="source:CACAO_on_E6_scaffold_1 2 3200" /mobile_element_type="transposon:TIR/hAT" mobile_element 5300359..5300457 /note="source:INTACT267_F13_scaffold_2-int 9995 10093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5302303..5304453) /note="source:CACAO_M_S_E86211_F313_scaffold_7 873 3010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5304156..5305532 /note="source:CACAO_M_E22953_F359_scaffold_3 1784 3113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5305457..5305550 /note="source:CACAO_M_S_E4534_F4_scaffold_1 4694 4789" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5308560..5309450) /note="source:CACAO_M_S_E89272_F5_scaffold_8 6728 7573" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5309552..5311299 /note="source:CACAO_M_E52239_F256_scaffold_7 19813 21565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5312434..5312506) /note="source:CACAO_M_S_E64832_F14_scaffold_5 12601 12674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5315051..5315144 /note="source:INTACT1223F_F374_scaffold_6-int 9782 9868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5315064..5317974) /note="source:INTACT597_F267_scaffold_2-int 5750 8676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5318525..5327146 /note="source:CACAO_M_S_E119877_F5_scaffold_10 1 12190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5319784..5328228) /note="source:INTACT83_F5_scaffold_9-int 483 8907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5328229..5329471 /note="source:CACAO_M_S_E118655_F231_scaffold_9 1 1243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5330953..5331369) /note="source:scaffold_4_CACTA_0493 69 496" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5331474..5333101 /note="source:CACAO_M_S_E118655_F231_scaffold_9 1181 2787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5332946..5333200) /note="source:INTACT118_F5_scaffold_9-int 15235 15488" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5333185..5336122) /note="source:CACAO_M_E10603_F306_scaffold_2 4817 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5336122..5336371) /note="source:INTACT118_F5_scaffold_9-int 14991 15241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5338136..5339273) /note="source:CACAO_M_E49195_F17_scaffold_6 1678 2802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5342779..5343486) /note="source:CACAO_M_E14081_F316_scaffold_3 12872 13579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5343764..5345042) /note="source:CACAO_M_E12297_F14_scaffold_3 6346 7625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5345001..5345048 /note="source:CACAO_M_E14081_F316_scaffold_3 13581 13626" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5346182..5346293) /note="source:CACAO_M_E3884_F22_scaffold_1 13219 13326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5346443..5346514) /note="source:scaffold_2_CACTA_0262 5131 5205" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5346454..5346563) /note="source:INTACT1820F_F94_scaffold_12-int 1673 1776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5348475..5349415) /note="source:CACAO_M_E84925_F82_scaffold_10 2386 3308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5349516..5352049 /note="source:CACAO_M_E44143_F323_scaffold_5 944 3479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5353621..5353920) /note="source:INTACT537_F22_scaffold_2-int 807 1105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5353919..5354247 /note="source:INTACT170_F12_scaffold_5-int 1177 1503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5354228..5357405 /note="source:INTACT1327F_F381_scaffold_8-int 6054 9257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5357406..5357929 /note="source:INTACT170_F12_scaffold_5-int 1492 2013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5357851..5357952) /note="source:INTACT409F_F47_scaffold_4-int 18084 18176" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5357884..5359919 /note="source:scaffold_2_CACTA_0262 6539 8555" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5359920..5364147 /note="source:INTACT1820F_F94_scaffold_12-int 256 4462" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5364251..5369228 /note="source:INTACT1820F_F94_scaffold_12-int 4468 9360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5369452..5369540 /note="source:CACAO_M_E59641_F12_scaffold_9 10404 10497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5369461..5370165) /note="source:scaffold_2_CACTA_0262 13855 14561" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5370163..5372068 /note="source:CACAO_M_S_E86211_F313_scaffold_7 1066 2598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5372066..5372103) /note="source:INTACT904F_F49_scaffold_6-int 5714 5750" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5373339..5373513) /note="source:scaffold_2_CACTA_0262 626 791" /mobile_element_type="transposon:TIR/CACTA" gene 5377569..5381554 /locus_tag="TCM_012708" /note="dbxref CacaoGD:Thecc1EG012708" mRNA join(5377569..5379077,5379555..5380900,5381001..5381554) /locus_tag="TCM_012708" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010182" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026806t2" /inference="similar to AA sequence:TAIR:AT4G02750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2941t1; alternateUTRof:Thecc1EG012708t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2590t1" mRNA join(5377569..5379077,5379555..5380900,5381001..5381006, 5381088..5381554) /locus_tag="TCM_012708" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010182" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026806t2" /inference="similar to AA sequence:TAIR:AT4G02750.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2590t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2590t1" mRNA join(5377569..5379077,5379555..5380900,5381088..5381554) /locus_tag="TCM_012708" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010182" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026806t2" /inference="similar to AA sequence:TAIR:AT4G02750.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2941t2; alternateUTRof:Thecc1EG012708t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2590t1" CDS join(5377578..5379077,5379555..5380361) /locus_tag="TCM_012708" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026806t2" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /protein_id="EOY21263.1" /db_xref="TAIR:AT4G02750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY02" /translation="MLKAMRGSHRCRQLHSISKLQPKPNHYPSKKALAQKKHNYNKPQ PVVDSDIKQWNLAISTHMRNAQLDSALRVFNSMPRRSSVSYNAMISGYLMNDKFELAR NLFDEMPERDLVSWNVMISGCVRNNNVAAAKELFEQMPERDVVSWNAMLSGYAQNGCV DKARKIFDRMPTKNSISWNALLATYVQNGRMEEACTLFESKADWDLVSWNCLMGGFVK TKRFIDARRIFDRIPFRDKISWNTIITGYAQNGEIEEARRLFHESPVRDVFTWTAMVS GYVQNGMVDKAREFFEEMPEKNAVSWNAMIAGYVQCKRMDMARKLFDKMPCRNVTSLN TIITGYAQSGEIAHARELFDRMPRRDPVSWAAMIAGYAQSGYDEEALCLFVEMKRDGE RLNRSSFACALSTCAHIAALEMGKQLHGRLVKAGYESGSFVGNALLLMYCKCGGIEEA CSAFEEIMEKDVVSWNTMIAGYARHGFGKEALKVFESMKAAGVKPDDTTMVGVLSACS HAGLVDRGREYFYCMNQDYAIKANSRHYTCMVDLLGRAGRLDEALKLIRNMPFEPDAA TWGALLGASRIHGNTKLAEMAAQLIFEMEPENAGMYVLLSNLYAASGRWADVSRMRLQ MRDTGVKKVPGCSWLEVQSKIHTFSVGDSCHPDRDKIYAYLEELDLKMKQEGYVSSTN LILHDVDNEEKEHMLKYHSEKLAVAFGILSIPAGRPIRVIKNLRVCEDCHNAIKYISK IVGRLIILRDSNRFHHFREGSCSCGDYW" CDS join(5377578..5379077,5379555..5380361) /locus_tag="TCM_012708" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026806t2" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /protein_id="EOY21264.1" /db_xref="TAIR:AT4G02750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY02" /translation="MLKAMRGSHRCRQLHSISKLQPKPNHYPSKKALAQKKHNYNKPQ PVVDSDIKQWNLAISTHMRNAQLDSALRVFNSMPRRSSVSYNAMISGYLMNDKFELAR NLFDEMPERDLVSWNVMISGCVRNNNVAAAKELFEQMPERDVVSWNAMLSGYAQNGCV DKARKIFDRMPTKNSISWNALLATYVQNGRMEEACTLFESKADWDLVSWNCLMGGFVK TKRFIDARRIFDRIPFRDKISWNTIITGYAQNGEIEEARRLFHESPVRDVFTWTAMVS GYVQNGMVDKAREFFEEMPEKNAVSWNAMIAGYVQCKRMDMARKLFDKMPCRNVTSLN TIITGYAQSGEIAHARELFDRMPRRDPVSWAAMIAGYAQSGYDEEALCLFVEMKRDGE RLNRSSFACALSTCAHIAALEMGKQLHGRLVKAGYESGSFVGNALLLMYCKCGGIEEA CSAFEEIMEKDVVSWNTMIAGYARHGFGKEALKVFESMKAAGVKPDDTTMVGVLSACS HAGLVDRGREYFYCMNQDYAIKANSRHYTCMVDLLGRAGRLDEALKLIRNMPFEPDAA TWGALLGASRIHGNTKLAEMAAQLIFEMEPENAGMYVLLSNLYAASGRWADVSRMRLQ MRDTGVKKVPGCSWLEVQSKIHTFSVGDSCHPDRDKIYAYLEELDLKMKQEGYVSSTN LILHDVDNEEKEHMLKYHSEKLAVAFGILSIPAGRPIRVIKNLRVCEDCHNAIKYISK IVGRLIILRDSNRFHHFREGSCSCGDYW" CDS join(5377578..5379077,5379555..5380361) /locus_tag="TCM_012708" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG026806t2" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /protein_id="EOY21265.1" /db_xref="TAIR:AT4G02750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY02" /translation="MLKAMRGSHRCRQLHSISKLQPKPNHYPSKKALAQKKHNYNKPQ PVVDSDIKQWNLAISTHMRNAQLDSALRVFNSMPRRSSVSYNAMISGYLMNDKFELAR NLFDEMPERDLVSWNVMISGCVRNNNVAAAKELFEQMPERDVVSWNAMLSGYAQNGCV DKARKIFDRMPTKNSISWNALLATYVQNGRMEEACTLFESKADWDLVSWNCLMGGFVK TKRFIDARRIFDRIPFRDKISWNTIITGYAQNGEIEEARRLFHESPVRDVFTWTAMVS GYVQNGMVDKAREFFEEMPEKNAVSWNAMIAGYVQCKRMDMARKLFDKMPCRNVTSLN TIITGYAQSGEIAHARELFDRMPRRDPVSWAAMIAGYAQSGYDEEALCLFVEMKRDGE RLNRSSFACALSTCAHIAALEMGKQLHGRLVKAGYESGSFVGNALLLMYCKCGGIEEA CSAFEEIMEKDVVSWNTMIAGYARHGFGKEALKVFESMKAAGVKPDDTTMVGVLSACS HAGLVDRGREYFYCMNQDYAIKANSRHYTCMVDLLGRAGRLDEALKLIRNMPFEPDAA TWGALLGASRIHGNTKLAEMAAQLIFEMEPENAGMYVLLSNLYAASGRWADVSRMRLQ MRDTGVKKVPGCSWLEVQSKIHTFSVGDSCHPDRDKIYAYLEELDLKMKQEGYVSSTN LILHDVDNEEKEHMLKYHSEKLAVAFGILSIPAGRPIRVIKNLRVCEDCHNAIKYISK IVGRLIILRDSNRFHHFREGSCSCGDYW" mobile_element complement(5384272..5384540) /note="source:scaffold_8_CACTA_0858 14484 14725" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5384631..5384900) /note="source:scaffold_8_CACTA_0858 14211 14500" /mobile_element_type="transposon:TIR/CACTA" gene complement(5388005..5396596) /locus_tag="TCM_012710" /note="dbxref CacaoGD:Thecc1EG012710" mRNA complement(join(5388005..5388583,5388800..5389043, 5389164..5389265,5389788..5389865,5391300..5391373, 5391455..5391592,5391943..5392098,5392248..5392397, 5394031..5394090,5394257..5394384,5394460..5394868, 5396011..5396596)) /locus_tag="TCM_012710" /product="Mitogen-activated protein kinase 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010874t6" /inference="similar to AA sequence:Phytozome:POPTR_0012s04590.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc629t1" CDS complement(join(5388509..5388583,5388800..5389043, 5389164..5389265,5389788..5389865,5391300..5391373, 5391455..5391592,5391943..5392098,5392248..5392397, 5394031..5394090,5394257..5394384,5394460..5394868, 5396011..5396298)) /locus_tag="TCM_012710" /note="paralog of Thecc1EG010874t6" /codon_start=1 /product="Mitogen-activated protein kinase 8" /protein_id="EOY21266.1" /db_xref="Phytozome:POPTR_0012s04590.1" /db_xref="TAIR:AT3G18040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0E459" /translation="MGGSGTLVDGVRRWFQRRHLITSSNNNTNNNPNNQDNVVKLNQH DRSASSLTQKQQQHQEGGGDLVVHDFDFSSLKLIKVPKRNYFLISSMESQKKGALETE FFTEYGEASRYQIQEVIGKGSYGVVGSAIDTHTGEKVAIKKINDVFEHVSDATRILRE IKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHYQF FLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTD YVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDT LGTPPAESISRIRNEKARRYLSSMRKKLPVPFSQKFPNVDPLALRLLEHLLAFDPKDR PTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQ MLQEYLRGGDQTSFMYPRPCSIYISGLESPSVPVQLVQLAGPGRGVDRFKRQFAHLEE HYGKGERSTPLQRQHASLPRERVPAPKDENVVQNNDFERRTAASVATSLNSPPSSLDG SENTNAEGQNGPSKPNYSTRSLLKSASISASKCVVVKEKKDSEEEPIAEVNDEIVDAL SKKVAALNA" mobile_element 5393032..5393368 /note="source:CACAO_M_E12440_F1_scaffold_3 1 337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5398106..5398597) /note="source:CACAO_PIF_E119_scaffold_3 1765 2272" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(5400495..5408754) /locus_tag="TCM_012711" /note="dbxref CacaoGD:Thecc1EG012711" mRNA complement(join(5400495..5401284,5401383..5401466, 5401566..5401619,5401725..5401772,5402155..5402237, 5402335..5402485,5402775..5402912,5403055..5403183, 5403708..5403916,5404025..5404136,5405461..5405520, 5405701..5405799,5405898..5405953,5406187..5406297, 5408583..5408692)) /locus_tag="TCM_012711" /product="ATPase, V1 complex, subunit B protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g24070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034287t2" /inference="similar to AA sequence:Phytozome:Glyma20g24070.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2042t5" mRNA complement(join(5400559..5401285,5402400..5402485, 5402775..5402912,5403055..5403183,5403708..5403916, 5404025..5404136,5405461..5405520,5405701..5405799, 5405898..5405953,5406187..5406256,5408583..5408754)) /locus_tag="TCM_012711" /product="ATPase, V1 complex, subunit B protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g24070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034287t2" /inference="similar to AA sequence:Phytozome:POPTR_0004s18400.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc460t13; alternateUTRof:Thecc1EG012711t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2042t5" mRNA complement(join(5400559..5401285,5402400..5402485, 5402775..5402912,5403055..5403183,5403708..5403916, 5404025..5404136,5405461..5405520,5405701..5405799, 5405898..5405953,5406187..5406272,5408583..5408754)) /locus_tag="TCM_012711" /product="ATPase, V1 complex, subunit B protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g24070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034287t2" /inference="similar to AA sequence:Phytozome:POPTR_0004s18400.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc460t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2042t5" mRNA complement(join(5400717..5401284,5401383..5401466, 5401566..5401619,5401725..5401772,5402155..5402237, 5402335..5402485,5402775..5402912,5403055..5403183, 5403708..5403916,5404025..5404136,5405461..5405520, 5405701..5405799,5405898..5405953,5406187..5406256, 5408583..5408676)) /locus_tag="TCM_012711" /product="ATPase, V1 complex, subunit B protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g24070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034287t2" /inference="similar to AA sequence:Phytozome:Glyma20g24070.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00976t00001; alternateUTRof:Thecc1EG012711t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2042t5" CDS complement(join(5401099..5401285,5402400..5402485, 5402775..5402912,5403055..5403183,5403708..5403916, 5404025..5404136,5405461..5405520,5405701..5405799, 5405898..5405953,5406187..5406244)) /locus_tag="TCM_012711" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG034287t2" /codon_start=1 /product="ATPase, V1 complex, subunit B protein isoform 3" /protein_id="EOY21269.1" /db_xref="Phytozome:POPTR_0004s18400.1" /db_xref="TAIR:AT4G38510.1" /translation="MGMAENNHDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQE IVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDML GRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARG QKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSGDQPEGGEEDNFAIVFAAMGVNMET AQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILT DMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERALYLEFLDKFERKFVTQGA YDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDTGN" CDS complement(join(5401099..5401285,5402400..5402485, 5402775..5402912,5403055..5403183,5403708..5403916, 5404025..5404136,5405461..5405520,5405701..5405799, 5405898..5405953,5406187..5406244)) /locus_tag="TCM_012711" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG034287t2" /codon_start=1 /product="ATPase, V1 complex, subunit B protein isoform 3" /protein_id="EOY21270.1" /db_xref="Phytozome:POPTR_0004s18400.1" /db_xref="TAIR:AT4G38510.1" /translation="MGMAENNHDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQE IVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDML GRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARG QKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSGDQPEGGEEDNFAIVFAAMGVNMET AQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILT DMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERALYLEFLDKFERKFVTQGA YDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDTGN" CDS complement(join(5401099..5401284,5401383..5401466, 5401566..5401619,5401725..5401772,5402155..5402237, 5402335..5402485,5402775..5402912,5403055..5403183, 5403708..5403916,5404025..5404136,5405461..5405520, 5405701..5405799,5405898..5405953,5406187..5406244)) /locus_tag="TCM_012711" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG034287t2" /codon_start=1 /product="ATPase, V1 complex, subunit B protein isoform 1" /protein_id="EOY21267.1" /db_xref="Phytozome:Glyma20g24070.3" /db_xref="TAIR:AT4G38510.5" /db_xref="UniProtKB/TrEMBL:UniRef50_P15313" /translation="MGMAENNHDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQE IVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDML GRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARG QKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSGDQPEGGEEDNFAIVFAAMGVNMET AQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILT DMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTM PNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRD HADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRN IFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDTGN" CDS complement(join(5401099..5401284,5401383..5401466, 5401566..5401619,5401725..5401772,5402155..5402237, 5402335..5402485,5402775..5402912,5403055..5403183, 5403708..5403916,5404025..5404136,5405461..5405520, 5405701..5405799,5405898..5405953,5406187..5406244)) /locus_tag="TCM_012711" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034287t2" /codon_start=1 /product="ATPase, V1 complex, subunit B protein isoform 1" /protein_id="EOY21268.1" /db_xref="Phytozome:Glyma20g24070.3" /db_xref="TAIR:AT4G38510.5" /db_xref="UniProtKB/TrEMBL:UniRef50_P15313" /translation="MGMAENNHDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQE IVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDML GRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARG QKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSGDQPEGGEEDNFAIVFAAMGVNMET AQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILT DMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTM PNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRD HADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRN IFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDTGN" mobile_element complement(5414410..5414532) /note="source:CACAO_M_E58324_F9_scaffold_9 7644 7755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5415172..5415617) /note="source:scaffold_10_CACTA_0137 6326 6773" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5417653..5418067 /note="source:scaffold_10_CACTA_0137 6357 6773" /mobile_element_type="transposon:TIR/CACTA" gene 5421735..5424248 /locus_tag="TCM_012713" /note="dbxref CacaoGD:Thecc1EG012713" mRNA join(5421735..5423068,5423575..5423646,5423739..5424061, 5424217..5424248) /locus_tag="TCM_012713" /product="Winged-helix DNA-binding transcription factor family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G48620.1" /inference="similar to AA sequence:frave:gene09397" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc105t5; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc105t5" mRNA join(5421735..5423068,5423575..5424162) /locus_tag="TCM_012713" /product="Winged-helix DNA-binding transcription factor family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G48620.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b012284t1a3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc124t15" CDS join(5422133..5423068,5423575..5423646,5423739..5423942) /locus_tag="TCM_012713" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene09397" /codon_start=1 /product="Winged-helix DNA-binding transcription factor family protein, putative isoform 1" /protein_id="EOY21271.1" /db_xref="TAIR:AT1G48620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9P7V9" /translation="MDPSLSSIPIDPLPPIAPPPIIPAVSTAVANPTTTAGLPPNLSH PPYSEMISEAIEALKERNGSSKRAIAKYIESAYKDLPPTHSALLTHHLKRLKNNGILV MVKKSYKLATAARSDASLPDSAPPHPPDASPGPKRGRGRPPKPKPTIPTVDPNSQQPV PLVDGPKKSPGRPRKDGPAGPLGPRKGRGRPPKSGPKKSPGRPRKPKTVRSVVGANAV KRGRGRPPKALTQLPPSAVLPIQVQPMAVPYADAPAAVAPILPRPRGRPKGAAGAAGA VVPGKRRGRPPKIGGVSTNPIKPKKTTGKPVGRPKKTTEGADTKALAAAYGEAKRKLE FFQLKVKQAVGALKPQFSSESNISVIGAIQELEGLAAMDIGTPSTEEAQAPPPPPPTQ PPVTQNEGQVH" CDS join(5422133..5423068,5423575..5423688) /locus_tag="TCM_012713" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Winged-helix DNA-binding transcription factor family protein, putative isoform 2" /protein_id="EOY21272.1" /db_xref="TAIR:AT1G48620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9P7V9" /translation="MDPSLSSIPIDPLPPIAPPPIIPAVSTAVANPTTTAGLPPNLSH PPYSEMISEAIEALKERNGSSKRAIAKYIESAYKDLPPTHSALLTHHLKRLKNNGILV MVKKSYKLATAARSDASLPDSAPPHPPDASPGPKRGRGRPPKPKPTIPTVDPNSQQPV PLVDGPKKSPGRPRKDGPAGPLGPRKGRGRPPKSGPKKSPGRPRKPKTVRSVVGANAV KRGRGRPPKALTQLPPSAVLPIQVQPMAVPYADAPAAVAPILPRPRGRPKGAAGAAGA VVPGKRRGRPPKIGGVSTNPIKPKKTTGKPVGRPKKTTEGADTKALAAAYGEAKRKLE FFVSLMISFMASSLL" mobile_element 5427706..5428172 /note="source:CACAO_Again_on_S_E97_scaffold_3 1 467" /mobile_element_type="transposon:TIR/hAT" mobile_element 5430528..5430607 /note="source:scaffold_10_CACTA_0137 6927 7008" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5430619..5430706 /note="source:scaffold_7_CACTA_0795 2945 3033" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5432215..5432335) /note="source:scaffold_7_CACTA_0795 2935 3066" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5432222..5432383 /note="source:scaffold_7_CACTA_0795 3180 3317" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5439355..5439618) /note="source:CACAO_PIF_E119_scaffold_3 4414 4676" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5439597..5439748 /note="source:scaffold_7_CACTA_0795 2910 3061" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5439617..5439940) /note="source:scaffold_7_CACTA_0795 2896 3284" /mobile_element_type="transposon:TIR/CACTA" gene 5440647..5458215 /locus_tag="TCM_012715" /note="dbxref CacaoGD:Thecc1EG012715" mRNA join(5440647..5441245,5441416..5442113,5443557..5443994, 5444939..5445042,5445402..5446669,5446791..5446831, 5448613..5448681,5449722..5449822,5450384..5450462, 5450563..5450661,5450849..5450917,5454887..5454936, 5455026..5455202,5457549..5458215) /locus_tag="TCM_012715" /product="Tyrosine kinase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09398" /inference="similar to AA sequence:Phytozome:GSVIVT01008413001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1957t3" mobile_element 5440886..5440944 /note="source:scaffold_9_CACTA_0943 9085 9137" /mobile_element_type="transposon:TIR/CACTA" mRNA join(5441231..5442113,5443538..5443994,5444939..5445042, 5445402..5446669,5446791..5446831,5448613..5448681, 5449722..5449822,5450384..5450462,5450563..5450661, 5450849..5450917,5454887..5454936,5455026..5455202, 5457549..5458181) /locus_tag="TCM_012715" /product="Tyrosine kinase family protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene09398" /inference="similar to AA sequence:Phytozome:POPTR_0012s04570.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc877t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1957t3" mRNA join(5441231..5442113,5443557..5443994,5444939..5445042, 5445402..5446669,5446791..5446831,5448613..5448681, 5449722..5449822,5450384..5450462,5450563..5450662, 5450849..5450917,5454887..5455202,5457549..5458181) /locus_tag="TCM_012715" /product="Tyrosine kinase family protein isoform 5" /inference="alignment:exonerate-protein:2:frave:gene09398" /inference="similar to AA sequence:frave:gene09398" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc625t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1957t3" mRNA join(5441231..5442113,5443557..5443994,5444939..5445042, 5445402..5446669,5446791..5446831,5448613..5448681, 5449722..5449822,5450384..5450462,5450563..5450661, 5450849..5450917,5454490..5454633,5454887..5454936, 5455026..5455202,5457549..5458181) /locus_tag="TCM_012715" /product="Tyrosine kinase family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene09398" /inference="similar to AA sequence:frave:gene09398" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc877t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1957t3" mRNA join(5441231..5442113,5443557..5443994,5444939..5445042, 5445402..5446651,5446791..5446831,5448613..5448681, 5449722..5449822,5450384..5450462,5450563..5450661, 5450849..5450917,5454887..5454936,5455026..5455202, 5457549..5458181) /locus_tag="TCM_012715" /product="Tyrosine kinase family protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene09398" /inference="similar to AA sequence:Phytozome:GSVIVT01008413001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc877t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1957t3" mRNA join(5441231..5442113,5443557..5443994,5444939..5445042, 5445402..5446669,5446791..5446831,5448613..5448681, 5449722..5449822,5450384..5450462,5450563..5450661, 5450849..5450917,5454490..5454914) /locus_tag="TCM_012715" /product="Tyrosine kinase family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene09398" /inference="similar to AA sequence:frave:gene09398" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc883t8; alternateUTRof:Thecc1EG012715t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1957t3" mRNA join(5441371..5442113,5443557..5443994,5444939..5445042, 5445402..5446651,5446791..5446831,5448613..5448681, 5449722..5449822,5450384..5450462,5450563..5450664, 5450849..5450917,5454887..5454938,5455026..5455202, 5457549..5458202) /locus_tag="TCM_012715" /product="Tyrosine kinase family protein isoform 6" /inference="alignment:exonerate-protein:2:frave:gene09398" /inference="similar to AA sequence:frave:gene09398" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1957t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1957t3" CDS join(5441616..5442113,5443557..5443994,5444939..5445042, 5445402..5446669,5446791..5446831,5448613..5448681, 5449722..5449822,5450384..5450462,5450563..5450661, 5450849..5450917,5454887..5454936,5455026..5455202, 5457549..5457681) /locus_tag="TCM_012715" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tyrosine kinase family protein isoform 1" /protein_id="EOY21273.1" /db_xref="Phytozome:GSVIVT01008413001" /db_xref="TAIR:AT1G73660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9U5" /translation="MKNLLKKLHMMSNQSEDVEGSTSSRGNNKSSEVSSSPERPLHAR SHHNPEHNKPFSVLSNWLNSVANRKNPSPPSSSNVNKEETMEPTDSVSTSGLEAALDA VRRDSGSSNSRDPDIEEEYQIQLALELSAREDPEAAQIEAVKQISLGSCAPENTPAEV VAFRYWNYNSLNYDDKILDGFYDLYGILNESTSERMPSLLDLQGTSVSDNVSWEAVLV NRAFDANLLKLEQKALQMTARLRSESLAFVSSNLVQKLAVLVSEYMGGPVADPDNMSR AWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSAGIPCRLVKGQQYTGSE DVAMNFVKLDDGREYIVDLMADPGTLIPSDAAASHVEDGDSFFSTSPLSRDIDSSHVA SSSSGVWSLFEDNSEFGTLEKRSRFKNFAAAGNQSDERGDLNAFVNLSGTTRSGEQSK ESMDDFKTPSNMEEAPVRELPNRPNYLYSHMRSPSWTEGVSSPAVRRMKVKDVSQYMI DAAKENPQLAQKLHDVLLESGVVAPPNLFSEIYSEQLDTSTIEVRLPFETKDESRQGT GPQESKNQNDFGPSHCLPPLPNRKVFAKASSPCNQPEHLKPVEGLGVTYPFDTREVIG PPVLSQSEAAPIQYARNVPVAAAAAAAAAVVASSMVVAAKKSGTDSNVELPVAAAATA TAAAVVVTSAAVTKHNERSDGDVDATGCESQGSGEREHDALGLNSEGERISDRSTGND SSKSDVALDDVADCEIPWEEITLGERIGLGSYGEVYRGDWHGTEVAVKKFLDQDISGE SLEEFKSEVRIMKKLRHPNVVLFMGAVTRPPNLSIVTEFLHRGSLYRLIHRPNNQLDE RRRLRMALDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTYL SSRSTAGTAEWMAPEVLQNELSDEKCDVYSFGVILWELCTLRQPWGGMNPMQVVGAVG FQHRRLDIPDDIDPVIAEIIRRCWQTDPKLRPTFAEIMAALKPLQKPITSAQVPRSTA SSSSAHERGQP" CDS join(5441616..5442113,5443557..5443994,5444939..5445042, 5445402..5446651,5446791..5446831,5448613..5448681, 5449722..5449822,5450384..5450462,5450563..5450661, 5450849..5450917,5454887..5454936,5455026..5455202, 5457549..5457681) /locus_tag="TCM_012715" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Tyrosine kinase family protein isoform 4" /protein_id="EOY21276.1" /db_xref="Phytozome:GSVIVT01008413001" /db_xref="TAIR:AT1G73660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9U5" /translation="MKNLLKKLHMMSNQSEDVEGSTSSRGNNKSSEVSSSPERPLHAR SHHNPEHNKPFSVLSNWLNSVANRKNPSPPSSSNVNKEETMEPTDSVSTSGLEAALDA VRRDSGSSNSRDPDIEEEYQIQLALELSAREDPEAAQIEAVKQISLGSCAPENTPAEV VAFRYWNYNSLNYDDKILDGFYDLYGILNESTSERMPSLLDLQGTSVSDNVSWEAVLV NRAFDANLLKLEQKALQMTARLRSESLAFVSSNLVQKLAVLVSEYMGGPVADPDNMSR AWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSAGIPCRLVKGQQYTGSE DVAMNFVKLDDGREYIVDLMADPGTLIPSDAAASHVEDGDSFFSTSPLSRDIDSSHVA SSSSGVWSLFEDNSEFGTLEKRSRFKNFAAAGNQSDERGDLNAFVNLSGTTRSGEQSK ESMDDFKTPSNMEEAPVRELPNRPNYLYSHMRSPSWTEGVSSPAVRRMKVKDVSQYMI DAAKENPQLAQKLHDVLLESGVVAPPNLFSEIYSEQLDTSTIEVRLPFETKDESRQGT GPQESKNQNDFGPSHCLPPLPNRKVFAKASSPCNQPEHLKPVEGLGVTYPFDTREVIG PPVLSQSEAAPIQYARNVPVAAAAAAAAAVVASSMVVAAKKSGTDSNVELPVAAAATA TAAAVVVTSAAVTKHNERSDGDVDATGCESQGSGEREHDALGLNSEGERISDRSTGND SSKSDVALDDVADCEIPWEEITLGSYGEVYRGDWHGTEVAVKKFLDQDISGESLEEFK SEVRIMKKLRHPNVVLFMGAVTRPPNLSIVTEFLHRGSLYRLIHRPNNQLDERRRLRM ALDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTYLSSRSTA GTAEWMAPEVLQNELSDEKCDVYSFGVILWELCTLRQPWGGMNPMQVVGAVGFQHRRL DIPDDIDPVIAEIIRRCWQTDPKLRPTFAEIMAALKPLQKPITSAQVPRSTASSSSAH ERGQP" CDS join(5441616..5442113,5443557..5443994,5444939..5445042, 5445402..5446651,5446791..5446831,5448613..5448681, 5449722..5449822,5450384..5450462,5450563..5450664, 5450849..5450917,5454887..5454938,5455026..5455096) /locus_tag="TCM_012715" /note="encoded by transcript variant 6; alternatively spliced; dbxref frave:gene09398" /codon_start=1 /product="Tyrosine kinase family protein isoform 6" /protein_id="EOY21278.1" /db_xref="TAIR:AT1G73660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9U5" /translation="MKNLLKKLHMMSNQSEDVEGSTSSRGNNKSSEVSSSPERPLHAR SHHNPEHNKPFSVLSNWLNSVANRKNPSPPSSSNVNKEETMEPTDSVSTSGLEAALDA VRRDSGSSNSRDPDIEEEYQIQLALELSAREDPEAAQIEAVKQISLGSCAPENTPAEV VAFRYWNYNSLNYDDKILDGFYDLYGILNESTSERMPSLLDLQGTSVSDNVSWEAVLV NRAFDANLLKLEQKALQMTARLRSESLAFVSSNLVQKLAVLVSEYMGGPVADPDNMSR AWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSAGIPCRLVKGQQYTGSE DVAMNFVKLDDGREYIVDLMADPGTLIPSDAAASHVEDGDSFFSTSPLSRDIDSSHVA SSSSGVWSLFEDNSEFGTLEKRSRFKNFAAAGNQSDERGDLNAFVNLSGTTRSGEQSK ESMDDFKTPSNMEEAPVRELPNRPNYLYSHMRSPSWTEGVSSPAVRRMKVKDVSQYMI DAAKENPQLAQKLHDVLLESGVVAPPNLFSEIYSEQLDTSTIEVRLPFETKDESRQGT GPQESKNQNDFGPSHCLPPLPNRKVFAKASSPCNQPEHLKPVEGLGVTYPFDTREVIG PPVLSQSEAAPIQYARNVPVAAAAAAAAAVVASSMVVAAKKSGTDSNVELPVAAAATA TAAAVVVTSAAVTKHNERSDGDVDATGCESQGSGEREHDALGLNSEGERISDRSTGND SSKSDVALDDVADCEIPWEEITLGSYGEVYRGDWHGTEVAVKKFLDQDISGESLEEFK SEVRIMKKLRHPNVVLFMGAVTRPPNLSIVTEFLHRGSLYRLIHRPNNQLDERRRLRM ALDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVVCDFGLSRMKHSTYLSSRST AGTAEWMAPEVLQNELSDEKCVMFIALELYYGSSVHCDNHGEE" CDS join(5441616..5442113,5443557..5443994,5444939..5445042, 5445402..5446669,5446791..5446831,5448613..5448681, 5449722..5449822,5450384..5450462,5450563..5450661, 5450849..5450917,5454490..5454534) /locus_tag="TCM_012715" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene09398" /codon_start=1 /product="Tyrosine kinase family protein isoform 2" /protein_id="EOY21274.1" /db_xref="TAIR:AT1G73660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9U5" /translation="MKNLLKKLHMMSNQSEDVEGSTSSRGNNKSSEVSSSPERPLHAR SHHNPEHNKPFSVLSNWLNSVANRKNPSPPSSSNVNKEETMEPTDSVSTSGLEAALDA VRRDSGSSNSRDPDIEEEYQIQLALELSAREDPEAAQIEAVKQISLGSCAPENTPAEV VAFRYWNYNSLNYDDKILDGFYDLYGILNESTSERMPSLLDLQGTSVSDNVSWEAVLV NRAFDANLLKLEQKALQMTARLRSESLAFVSSNLVQKLAVLVSEYMGGPVADPDNMSR AWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSAGIPCRLVKGQQYTGSE DVAMNFVKLDDGREYIVDLMADPGTLIPSDAAASHVEDGDSFFSTSPLSRDIDSSHVA SSSSGVWSLFEDNSEFGTLEKRSRFKNFAAAGNQSDERGDLNAFVNLSGTTRSGEQSK ESMDDFKTPSNMEEAPVRELPNRPNYLYSHMRSPSWTEGVSSPAVRRMKVKDVSQYMI DAAKENPQLAQKLHDVLLESGVVAPPNLFSEIYSEQLDTSTIEVRLPFETKDESRQGT GPQESKNQNDFGPSHCLPPLPNRKVFAKASSPCNQPEHLKPVEGLGVTYPFDTREVIG PPVLSQSEAAPIQYARNVPVAAAAAAAAAVVASSMVVAAKKSGTDSNVELPVAAAATA TAAAVVVTSAAVTKHNERSDGDVDATGCESQGSGEREHDALGLNSEGERISDRSTGND SSKSDVALDDVADCEIPWEEITLGERIGLGSYGEVYRGDWHGTEVAVKKFLDQDISGE SLEEFKSEVRIMKKLRHPNVVLFMGAVTRPPNLSIVTEFLHRGSLYRLIHRPNNQLDE RRRLRMALDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTYL SSRSTAGTLNHMPLDVHWDGQC" CDS join(5441616..5442113,5443557..5443994,5444939..5445042, 5445402..5446669,5446791..5446831,5448613..5448681, 5449722..5449822,5450384..5450462,5450563..5450661, 5450849..5450917,5454490..5454534) /locus_tag="TCM_012715" /note="encoded by transcript variant 7; alternatively spliced; dbxref frave:gene09398" /codon_start=1 /product="Tyrosine kinase family protein isoform 2" /protein_id="EOY21279.1" /db_xref="TAIR:AT1G73660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9U5" /translation="MKNLLKKLHMMSNQSEDVEGSTSSRGNNKSSEVSSSPERPLHAR SHHNPEHNKPFSVLSNWLNSVANRKNPSPPSSSNVNKEETMEPTDSVSTSGLEAALDA VRRDSGSSNSRDPDIEEEYQIQLALELSAREDPEAAQIEAVKQISLGSCAPENTPAEV VAFRYWNYNSLNYDDKILDGFYDLYGILNESTSERMPSLLDLQGTSVSDNVSWEAVLV NRAFDANLLKLEQKALQMTARLRSESLAFVSSNLVQKLAVLVSEYMGGPVADPDNMSR AWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSAGIPCRLVKGQQYTGSE DVAMNFVKLDDGREYIVDLMADPGTLIPSDAAASHVEDGDSFFSTSPLSRDIDSSHVA SSSSGVWSLFEDNSEFGTLEKRSRFKNFAAAGNQSDERGDLNAFVNLSGTTRSGEQSK ESMDDFKTPSNMEEAPVRELPNRPNYLYSHMRSPSWTEGVSSPAVRRMKVKDVSQYMI DAAKENPQLAQKLHDVLLESGVVAPPNLFSEIYSEQLDTSTIEVRLPFETKDESRQGT GPQESKNQNDFGPSHCLPPLPNRKVFAKASSPCNQPEHLKPVEGLGVTYPFDTREVIG PPVLSQSEAAPIQYARNVPVAAAAAAAAAVVASSMVVAAKKSGTDSNVELPVAAAATA TAAAVVVTSAAVTKHNERSDGDVDATGCESQGSGEREHDALGLNSEGERISDRSTGND SSKSDVALDDVADCEIPWEEITLGERIGLGSYGEVYRGDWHGTEVAVKKFLDQDISGE SLEEFKSEVRIMKKLRHPNVVLFMGAVTRPPNLSIVTEFLHRGSLYRLIHRPNNQLDE RRRLRMALDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTYL SSRSTAGTLNHMPLDVHWDGQC" CDS join(5441616..5442113,5443557..5443994,5444939..5445042, 5445402..5446669,5446791..5446831,5448613..5448681, 5449722..5449822,5450384..5450462,5450563..5450662, 5450849..5450856) /locus_tag="TCM_012715" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene09398" /codon_start=1 /product="Tyrosine kinase family protein isoform 5" /protein_id="EOY21277.1" /db_xref="TAIR:AT1G73660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9U5" /translation="MKNLLKKLHMMSNQSEDVEGSTSSRGNNKSSEVSSSPERPLHAR SHHNPEHNKPFSVLSNWLNSVANRKNPSPPSSSNVNKEETMEPTDSVSTSGLEAALDA VRRDSGSSNSRDPDIEEEYQIQLALELSAREDPEAAQIEAVKQISLGSCAPENTPAEV VAFRYWNYNSLNYDDKILDGFYDLYGILNESTSERMPSLLDLQGTSVSDNVSWEAVLV NRAFDANLLKLEQKALQMTARLRSESLAFVSSNLVQKLAVLVSEYMGGPVADPDNMSR AWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSAGIPCRLVKGQQYTGSE DVAMNFVKLDDGREYIVDLMADPGTLIPSDAAASHVEDGDSFFSTSPLSRDIDSSHVA SSSSGVWSLFEDNSEFGTLEKRSRFKNFAAAGNQSDERGDLNAFVNLSGTTRSGEQSK ESMDDFKTPSNMEEAPVRELPNRPNYLYSHMRSPSWTEGVSSPAVRRMKVKDVSQYMI DAAKENPQLAQKLHDVLLESGVVAPPNLFSEIYSEQLDTSTIEVRLPFETKDESRQGT GPQESKNQNDFGPSHCLPPLPNRKVFAKASSPCNQPEHLKPVEGLGVTYPFDTREVIG PPVLSQSEAAPIQYARNVPVAAAAAAAAAVVASSMVVAAKKSGTDSNVELPVAAAATA TAAAVVVTSAAVTKHNERSDGDVDATGCESQGSGEREHDALGLNSEGERISDRSTGND SSKSDVALDDVADCEIPWEEITLGERIGLGSYGEVYRGDWHGTEVAVKKFLDQDISGE SLEEFKSEVRIMKKLRHPNVVLFMGAVTRPPNLSIVTEFLHRGSLYRLIHRPNNQLDE RRRLRMALDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKGL" CDS join(5443644..5443994,5444939..5445042,5445402..5446669, 5446791..5446831,5448613..5448681,5449722..5449822, 5450384..5450462,5450563..5450661,5450849..5450917, 5454887..5454936,5455026..5455202,5457549..5457681) /locus_tag="TCM_012715" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Tyrosine kinase family protein isoform 3" /protein_id="EOY21275.1" /db_xref="Phytozome:POPTR_0012s04570.1" /db_xref="TAIR:AT1G73660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9U5" /translation="MPSLLDLQGTSVSDNVSWEAVLVNRAFDANLLKLEQKALQMTAR LRSESLAFVSSNLVQKLAVLVSEYMGGPVADPDNMSRAWRSLSYSLKATLGSMVLPLG SLTIGLARHRALLFKVLADSAGIPCRLVKGQQYTGSEDVAMNFVKLDDGREYIVDLMA DPGTLIPSDAAASHVEDGDSFFSTSPLSRDIDSSHVASSSSGVWSLFEDNSEFGTLEK RSRFKNFAAAGNQSDERGDLNAFVNLSGTTRSGEQSKESMDDFKTPSNMEEAPVRELP NRPNYLYSHMRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPQLAQKLHDVLLESG VVAPPNLFSEIYSEQLDTSTIEVRLPFETKDESRQGTGPQESKNQNDFGPSHCLPPLP NRKVFAKASSPCNQPEHLKPVEGLGVTYPFDTREVIGPPVLSQSEAAPIQYARNVPVA AAAAAAAAVVASSMVVAAKKSGTDSNVELPVAAAATATAAAVVVTSAAVTKHNERSDG DVDATGCESQGSGEREHDALGLNSEGERISDRSTGNDSSKSDVALDDVADCEIPWEEI TLGERIGLGSYGEVYRGDWHGTEVAVKKFLDQDISGESLEEFKSEVRIMKKLRHPNVV LFMGAVTRPPNLSIVTEFLHRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHNCT PVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTYLSSRSTAGTAEWMAPEVLQNEL SDEKCDVYSFGVILWELCTLRQPWGGMNPMQVVGAVGFQHRRLDIPDDIDPVIAEIIR RCWQTDPKLRPTFAEIMAALKPLQKPITSAQVPRSTASSSSAHERGQP" gene 5458589..5460306 /locus_tag="TCM_012717" /note="dbxref CacaoGD:Thecc1EG012717" mRNA join(5458589..5459093,5459501..5459545,5459650..5460306) /locus_tag="TCM_012717" /product="FK506 binding protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04560.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008414001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11468t00001" CDS join(5458708..5459093,5459501..5459545,5459650..5460004) /locus_tag="TCM_012717" /codon_start=1 /product="FK506 binding protein, putative" /protein_id="EOY21280.1" /db_xref="Phytozome:GSVIVT01008414001" /db_xref="TAIR:AT1G18170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T2M5" /translation="MAAFFGSPPFLSHPLTRTPHFSSSSQTPPPTPPSPPNPSSQSQP QPSTPSPQLSTTSSEQQPPATVRVQQQGPPKPATNVETTDWIASSLTRRFGLGAGLAW AAFLAVGVISEQIKTRLEISQQEANTRDAEEQEEVVLPNGIRYYEVRVGGGASPRNGD LVVIDLKGKIEGSGEVFVDTFDGGKKPLALVMGSRPYSKGTCEGVESVLRSMKAGGKR RVIVPPNLGFGENGADLGSGVQIPPSATLEYILEVDKVSIAPA" mobile_element 5460741..5465812 /note="source:CACAO_M_E12105_F316_scaffold_3 1 5169" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5465072..5466086) /note="source:CACAO_M_E4368_F316_scaffold_2 1 999" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5467042..5467101) /note="source:scaffold_5_CACTA_0601 6230 6268" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5467102..5469976 /note="source:CACAO_M_E11901_F80_scaffold_2 1 2933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5469977..5470010) /note="source:INTACT47_F12_scaffold_3-int 6665 6693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5474900..5475381) /note="source:CACAO_M_E5870_F358_scaffold_2 1560 2041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5475379..5477477) /note="source:CACAO_M_E45308_F72_scaffold_6 1 2106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5477478..5485115 /note="source:INTACT414F_F358_scaffold_4-int 2034 9580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5488189..5488350 /note="source:scaffold_4_CACTA_0490 1900 2042" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5490171..5491313) /note="source:CACAO_M_S_E18399_F231_scaffold_3 9525 10562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5491314..5502458 /note="source:INTACT183F_F349_scaffold_3-int 1 11145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5502459..5503099) /note="source:INTACT30F_F12_scaffold_1-int 12658 13296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5503085..5503099 /note="source:CACAO_M_S_E5285_F300_scaffold_1 6615 6634" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5503100..5504610 /note="source:INTACT759_F323_scaffold_6-int 1 1514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5506174..5509091 /note="source:INTACT759_F323_scaffold_6-int 3078 6000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5511426..5513167 /note="source:CACAO_M_S_E87920_F323_scaffold_7 810 2552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5513268..5513684 /note="source:CACAO_M_E53587_F207_scaffold_8 19910 20325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5513685..5514351 /note="source:CACAO_M_E1841_F5_scaffold_1 21174 21839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5516342..5517763) /note="source:CACAO_M_E13363_F273_scaffold_3 1541 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5517764..5518805 /note="source:INTACT407F_F356_scaffold_4-int 2157 3196" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5518806..5521539 /note="source:CACAO_M_E12446_F15_scaffold_3 1 2734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5521540..5522009 /note="source:CACAO_M_E13363_F273_scaffold_3 1218 2965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5522010..5523296 /note="source:INTACT407F_F356_scaffold_4-int 3720 5004" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5523282..5524823 /note="source:CACAO_M_S_E5285_F300_scaffold_1 8292 9854" /mobile_element_type="retrotransposon:LTR/Copia" gene 5526483..5534091 /locus_tag="TCM_012724" /note="dbxref CacaoGD:Thecc1EG012724" mRNA join(5526483..5526581,5529278..5529489,5530171..5530225, 5531989..5532095,5533840..5534091) /locus_tag="TCM_012724" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element complement(5527992..5528134) /note="source:CACAO_M_E1841_F5_scaffold_1 10341 10483" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(5529390..5529489,5530171..5530225,5531989..5532082) /locus_tag="TCM_012724" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21281.1" /translation="MWRLKEGGYDEFVELGAWLVSYIYTSICRDGELDKLAKDRVLRE IELLHVLRCCCKSKEFIEVNTWSLLEVGSSNSCVDTPF" gene complement(5534094..5537278) /locus_tag="TCM_012725" /note="dbxref CacaoGD:Thecc1EG012725" mRNA complement(join(5534094..5535161,5535264..5535428, 5537069..5537278)) /locus_tag="TCM_012725" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element complement(5534317..5534437) /note="source:INTACT189_F49_scaffold_5-int 17816 17908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5534520..5534578) /note="source:INTACT189_F49_scaffold_5-int 17714 17768" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(5534964..5535161,5535264..5535428, 5537069..5537095)) /locus_tag="TCM_012725" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21282.1" /translation="MLLVNKKYKNLRPSRTNSTHVIRKDMFFMHHIKHNIKIYLADFI LQDMMEVTTKKNRTLVYGMVYKQSNGGWYQSHVTSAQVLEPRETEPENENEDTEVLVT STIINSQIAEMKDYFGSIIRRLIKERE" gene 5537565..5545688 /locus_tag="TCM_012726" /note="dbxref CacaoGD:Thecc1EG012726" mRNA join(5537565..5537978,5538073..5538142,5538374..5538441, 5539854..5539915,5541797..5541878,5541991..5542224, 5543075..5543203,5543300..5543361,5543447..5543563, 5545428..5545534) /locus_tag="TCM_012726" /product="FKBP-type peptidyl-prolyl cis-trans isomerase 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04430.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008416001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09926t00001" mRNA join(5537835..5537978,5538073..5538142,5538374..5538441, 5539854..5539915,5541797..5541878,5541991..5542224, 5543075..5543203,5543300..5543361,5543447..5543563, 5545434..5545688) /locus_tag="TCM_012726" /product="FKBP-type peptidyl-prolyl cis-trans isomerase 5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04430.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008416001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03762t00001; inference alignment:Newbler:10:TSA:cgbaB_g09926t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8265t1" CDS join(5537928..5537978,5538073..5538142,5538374..5538441, 5539854..5539915,5541797..5541878,5541991..5542224, 5543075..5543203,5543300..5543361,5543447..5543563, 5545428..5545476) /locus_tag="TCM_012726" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="FKBP-type peptidyl-prolyl cis-trans isomerase 5 isoform 1" /protein_id="EOY21283.1" /db_xref="Phytozome:GSVIVT01008416001" /db_xref="TAIR:AT1G73650.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMS0" /translation="MGTVIDSHFLALTAIVTVGYQLFFFIITALLKFDKVTDFAGSTN FIIIAVLTLVTKGSWHFRQVVLTLLVVIWGLRLGLFLLMRILQWGEDRRFDEMRSNLG KLAFFWIFQAVWVWTVSLPVTVVNASDRDPSIQAEDIIGWILWSVGISVEATADQQKL SFKNSPENRGKWCNIGLWKYTRHPNYFGEILLWWGIFVASAPVLEGAEWLVILGPIFL TLLLLFVSGIPLLEESADKKFGNVNAYRIYKKTTSPLIPLPPFVYGNLPLWFKATFLF EFPFYSRNFPQEGPNWCRTSQEEIKDELKMG" CDS join(5537928..5537978,5538073..5538142,5538374..5538441, 5539854..5539915,5541797..5541878,5541991..5542224, 5543075..5543203,5543300..5543361,5543447..5543563, 5545434) /locus_tag="TCM_012726" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="FKBP-type peptidyl-prolyl cis-trans isomerase 5 isoform 2" /protein_id="EOY21284.1" /db_xref="Phytozome:GSVIVT01008416001" /db_xref="TAIR:AT1G73650.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMS0" /translation="MGTVIDSHFLALTAIVTVGYQLFFFIITALLKFDKVTDFAGSTN FIIIAVLTLVTKGSWHFRQVVLTLLVVIWGLRLGLFLLMRILQWGEDRRFDEMRSNLG KLAFFWIFQAVWVWTVSLPVTVVNASDRDPSIQAEDIIGWILWSVGISVEATADQQKL SFKNSPENRGKWCNIGLWKYTRHPNYFGEILLWWGIFVASAPVLEGAEWLVILGPIFL TLLLLFVSGIPLLEESADKKFGNVNAYRIYKKTTSPLIPLPPFVYGNLPLWFKATFLF EFPFYSRNFPQEGPN" gene complement(5545427..5556080) /locus_tag="TCM_012727" /note="dbxref CacaoGD:Thecc1EG012727" mRNA complement(join(5545427..5546284,5546371..5546418, 5546996..5547121,5550932..5551024,5551171..5551223, 5552174..5552231,5552739..5552798,5552908..5553018, 5554121..5555260,5555463..5555739)) /locus_tag="TCM_012727" /product="Golgin candidate 2, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008418001" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010200" /inference="similar to AA sequence:Phytozome:POPTR_0015s04440.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc271t14; alternateUTRof:Thecc1EG012727t1; inference alignment:Newbler:10:TSA:cgbaB_g04403t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc281t12" mRNA complement(join(5545433..5546284,5546371..5546418, 5546996..5547121,5550932..5551024,5551171..5551223, 5552174..5552231,5552739..5552798,5552908..5553018, 5554121..5555260,5555463..5555739)) /locus_tag="TCM_012727" /product="Golgin candidate 2, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008418001" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010200" /inference="similar to AA sequence:Phytozome:POPTR_0015s04440.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc282t10; alternateUTRof:Thecc1EG012727t1; inference alignment:Newbler:10:TSA:cgbaB_g04403t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc281t12" mRNA complement(join(5545633..5546284,5546371..5546418, 5546996..5547121,5550932..5551024,5551171..5551223, 5552174..5552231,5552739..5552798,5552908..5553018, 5554121..5555260,5555463..5556080)) /locus_tag="TCM_012727" /product="Golgin candidate 2, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010200" /inference="similar to AA sequence:Phytozome:POPTR_0015s04440.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04403t00001" CDS complement(join(5545925..5546284,5546371..5546418, 5546996..5547121,5550932..5551024,5551171..5551223, 5552174..5552231,5552739..5552798,5552908..5553018, 5554121..5555260,5555463..5555516)) /locus_tag="TCM_012727" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Golgin candidate 2, putative isoform 1" /protein_id="EOY21285.1" /db_xref="Phytozome:POPTR_0015s04440.1" /db_xref="TAIR:AT1G18190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSK2" /translation="MANWISSKLKVAETLLQQIDQQAAESLGKNEKAPSDEIKFDTPT KTSGVVSLKDQLKKKSQENNDYQGKLFSDPNANLSYNNNNNSVHVSNRDKEVSTTKAP SKPKSTLTDSDWTELLSTPSQATSSTGNNRSNGVSGIRGLRKDARKKGNLGSNLSVLE GKRNQKSNVNVIKSVRKRDIVLGSKLNGKPSDGEESSSSGRPSSVDIQIDGKNLEGLE LDHKDTTASFKVKLKDEINGENGWQLDSKDLSSNVEGFSRSLNKNHSFQKMMELGKAD GLPDVKIGMADAHDQLRSTVSGKSKSIGASRSSVSDDVKRVSQSTSDGSSDSDSDSGS TSDSESEHEREERRRRKERILAEKAAAKAVEAIKERENMVARLEGEKQSLEKILEERA KQQAQEASELQTTMMEMMEAVELEKQKHNITRMEALQRLAKLETTNADLARSLATAQK KLEVEINQVADLRQQIDLKEAAHEELKRRISNSHESGTYLNQLVASKGIELEREILEA EYSLVTDKIGQLQDKVRQLEASIELTRKEMEDPSEVEVELKRRLGQLTDHLIQKQAQV EALSSEKATLLFRIEAVSRMLDESKSMNTSDASSSDLESGAWDLSDSKLKPLLEDKIR FGRRQLGSLLMQLDAIFVAGAIFLRRNATAKLCSLVYLVCLHFWVIYILMSHSQPSDE GRSGAVMSLENMNKTAGV" CDS complement(join(5545925..5546284,5546371..5546418, 5546996..5547121,5550932..5551024,5551171..5551223, 5552174..5552231,5552739..5552798,5552908..5553018, 5554121..5555260,5555463..5555516)) /locus_tag="TCM_012727" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Golgin candidate 2, putative isoform 1" /protein_id="EOY21286.1" /db_xref="Phytozome:POPTR_0015s04440.1" /db_xref="TAIR:AT1G18190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSK2" /translation="MANWISSKLKVAETLLQQIDQQAAESLGKNEKAPSDEIKFDTPT KTSGVVSLKDQLKKKSQENNDYQGKLFSDPNANLSYNNNNNSVHVSNRDKEVSTTKAP SKPKSTLTDSDWTELLSTPSQATSSTGNNRSNGVSGIRGLRKDARKKGNLGSNLSVLE GKRNQKSNVNVIKSVRKRDIVLGSKLNGKPSDGEESSSSGRPSSVDIQIDGKNLEGLE LDHKDTTASFKVKLKDEINGENGWQLDSKDLSSNVEGFSRSLNKNHSFQKMMELGKAD GLPDVKIGMADAHDQLRSTVSGKSKSIGASRSSVSDDVKRVSQSTSDGSSDSDSDSGS TSDSESEHEREERRRRKERILAEKAAAKAVEAIKERENMVARLEGEKQSLEKILEERA KQQAQEASELQTTMMEMMEAVELEKQKHNITRMEALQRLAKLETTNADLARSLATAQK KLEVEINQVADLRQQIDLKEAAHEELKRRISNSHESGTYLNQLVASKGIELEREILEA EYSLVTDKIGQLQDKVRQLEASIELTRKEMEDPSEVEVELKRRLGQLTDHLIQKQAQV EALSSEKATLLFRIEAVSRMLDESKSMNTSDASSSDLESGAWDLSDSKLKPLLEDKIR FGRRQLGSLLMQLDAIFVAGAIFLRRNATAKLCSLVYLVCLHFWVIYILMSHSQPSDE GRSGAVMSLENMNKTAGV" CDS complement(join(5545925..5546284,5546371..5546418, 5546996..5547121,5550932..5551024,5551171..5551223, 5552174..5552231,5552739..5552798,5552908..5553018, 5554121..5555260,5555463..5555516)) /locus_tag="TCM_012727" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Golgin candidate 2, putative isoform 1" /protein_id="EOY21287.1" /db_xref="Phytozome:POPTR_0015s04440.1" /db_xref="TAIR:AT1G18190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSK2" /translation="MANWISSKLKVAETLLQQIDQQAAESLGKNEKAPSDEIKFDTPT KTSGVVSLKDQLKKKSQENNDYQGKLFSDPNANLSYNNNNNSVHVSNRDKEVSTTKAP SKPKSTLTDSDWTELLSTPSQATSSTGNNRSNGVSGIRGLRKDARKKGNLGSNLSVLE GKRNQKSNVNVIKSVRKRDIVLGSKLNGKPSDGEESSSSGRPSSVDIQIDGKNLEGLE LDHKDTTASFKVKLKDEINGENGWQLDSKDLSSNVEGFSRSLNKNHSFQKMMELGKAD GLPDVKIGMADAHDQLRSTVSGKSKSIGASRSSVSDDVKRVSQSTSDGSSDSDSDSGS TSDSESEHEREERRRRKERILAEKAAAKAVEAIKERENMVARLEGEKQSLEKILEERA KQQAQEASELQTTMMEMMEAVELEKQKHNITRMEALQRLAKLETTNADLARSLATAQK KLEVEINQVADLRQQIDLKEAAHEELKRRISNSHESGTYLNQLVASKGIELEREILEA EYSLVTDKIGQLQDKVRQLEASIELTRKEMEDPSEVEVELKRRLGQLTDHLIQKQAQV EALSSEKATLLFRIEAVSRMLDESKSMNTSDASSSDLESGAWDLSDSKLKPLLEDKIR FGRRQLGSLLMQLDAIFVAGAIFLRRNATAKLCSLVYLVCLHFWVIYILMSHSQPSDE GRSGAVMSLENMNKTAGV" gene complement(5556127..5577069) /locus_tag="TCM_012729" /note="dbxref CacaoGD:Thecc1EG012729" mRNA complement(join(5556127..5556204,5571508..5572001, 5576660..5577069)) /locus_tag="TCM_012729" /product="RAB GTPase A6A" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008419001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031673t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s04450.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4111t2" mobile_element complement(5564136..5564918) /note="source:CACAO_on_E732_scaffold_9 3188 3931" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(5564776..5566386) /locus_tag="TCM_012731" /note="dbxref CacaoGD:Thecc1EG012731" mRNA complement(join(5564776..5565919,5566009..5566386)) /locus_tag="TCM_012731" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene20682.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010712t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022336001" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc2Loc8057t1_G3" mobile_element complement(5565019..5565342) /note="source:CACAO_on_E732_scaffold_9 2847 3170" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS complement(join(5565338..5565919,5566009..5566368)) /locus_tag="TCM_012731" /note="paralog of Thecc1EG010712t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21289.1" /db_xref="Phytozome:GSVIVT01022336001" /translation="MSTSSARASQSSKGTKRKWNHHEDVALVTALIDLHNIGKYNADT GFRGGYLIELENMLATKLPDANLKAKPHIESRIKTLKKEWAIIYDMVQGTHTSGFGWD DQRNMVVADDPVWEAYIQSHKEAAPFRRKSFPFFNELSIIYARDRATGKDAQTAADIL EEMQDCNDTINEEIEGENLAGYNFEDEDFSNIQPQTSAPRSDTTSTRKRKMLNETGDP ITSESIIAAATILGENIKEAGIEFSRSVGAEVNIQQKAQELDGILSQVEGLTAMERVL ASIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX" mobile_element complement(5565443..5567279) /note="source:CACAO_on_E732_scaffold_9 964 2810" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(5566522..5567279) /locus_tag="TCM_012732" /note="dbxref CacaoGD:Thecc1EG012732" mRNA complement(join(5566522..5567088,5567188..5567279)) /locus_tag="TCM_012732" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017356t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc4840t1_G3" CDS complement(5566628..5566957) /locus_tag="TCM_012732" /note="paralog of Thecc1EG017356t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21290.1" /translation="MKHAAARNVIERCFGLLKMRWGILRSPSFYPIRIHNRIIIACCL LHNFIRREMSFDPIEMDLGEYVETNIAVDEDFISTIDPTDVWGNFRMELANQMFNEWQ ASRQNDD" mobile_element complement(5567380..5568186) /note="source:CACAO_on_E732_scaffold_9 123 928" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS complement(join(5571566..5572001,5576660..5576877)) /locus_tag="TCM_012729" /note="paralog of Thecc1EG031673t1" /codon_start=1 /product="RAB GTPase A6A" /protein_id="EOY21288.1" /db_xref="Phytozome:POPTR_0015s04450.1" /db_xref="TAIR:AT1G73640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9U7" /translation="MADSYDEECDYLFKAVLIGDSAVGKSNLLSRFATDEFRLDSKPT IGVEFAYRNVKIGDKIIKAQIWDTAGQERFRAITSSYYRGALGALLVYDISRRTTFTN VKKWMHELREFGNLDMVVVLVGNKSDLADQRREVSEEEGRKLAETEGLFFMETSALEN VNVEEAFLRMITKIHEITSQKCLEAKTNETTLHGGKQIITINDEVTATKQSNNCCYK" mobile_element complement(5585794..5585901) /note="source:CACAO_M_E70891_F369_scaffold_10 2632 2735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5587460..5588838) /note="source:INTACT1430F_F92_scaffold_9-int 5185 6541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5589431..5589586) /note="source:INTACT1430F_F92_scaffold_9-int 1071 1263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5590011..5592954 /note="source:CACAO_M_S_E17271_F72_scaffold_3 1 2944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5594146..5596038 /note="source:CACAO_M_S_E17274_F15_scaffold_3 1 1893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5596497..5597251 /note="source:CACAO_M_S_E17274_F15_scaffold_3 1894 2648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5599322..5600812 /note="source:INTACT554_F250_scaffold_7-int 1 1333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5601642..5601739) /note="source:INTACT375F_F353_scaffold_3-int 15041 15141" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5602219..5615702 /note="source:INTACT458_F219_scaffold_7-int 2994 19459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5616543..5616628) /note="source:INTACT375F_F353_scaffold_3-int 15041 15128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5616904..5616997) /note="source:INTACT444_F216_scaffold_4-int 1 110" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5617553..5617745 /note="source:INTACT296_F13_scaffold_9-int 102 292" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5618003..5618052 /note="source:CACAO_M_E58877_F5_scaffold_9 26044 26091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5623273..5623363) /note="source:INTACT135F_F90_scaffold_2-int 13915 14005" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5623366..5623924) /note="source:INTACT554_F250_scaffold_7-int 17235 17780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5624758..5625225 /note="source:INTACT345_F202_scaffold_1-int 1382 1817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5625330..5625398 /note="source:CACAO_M_E49559_F88_scaffold_7 7680 7748" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5625354..5635874) /note="source:INTACT58_F125_scaffold_5-int 5032 15542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5635875..5636433) /note="source:INTACT642F_F365_scaffold_5-int 2456 3014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5636435..5638577 /note="source:CACAO_M_S_E17277_F85_scaffold_3 1 2143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5639640..5641954 /note="source:CACAO_M_S_E17277_F85_scaffold_3 2144 4458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5642055..5646711 /note="source:CACAO_M_S_E17277_F85_scaffold_3 4459 9115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5646713..5647994 /note="source:INTACT444_F216_scaffold_4-int 16258 17492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5647995..5648613) /note="source:INTACT554_F250_scaffold_7-int 17185 17780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5649429..5649472 /note="source:scaffold_5_CACTA_0584 1934 1977" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5649595..5651166 /note="source:INTACT444_F216_scaffold_4-int 19010 20410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5651167..5651630) /note="source:INTACT135F_F90_scaffold_2-int 13456 13917" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(5651645..5652296) /locus_tag="TCM_012742" /note="dbxref CacaoGD:Thecc1EG012742" mRNA complement(join(5651645..5652016,5652132..5652296)) /locus_tag="TCM_012742" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage" CDS complement(join(5651741..5652016,5652132..5652260)) /locus_tag="TCM_012742" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21291.1" /translation="MYRFSFNSFAHITTFTARLVQGIAKLFPAYSQGNSLAPFGTTLT KIPLITEMTLVAAVTTVAATAVSIPNMVKQDSNGDPARSSTQRSDLVARSTGSGASRP YRTVGSGTPRLDPVAVKCRSGAVMVRSDLMVL" gene complement(5654309..5655459) /locus_tag="TCM_012743" /note="dbxref CacaoGD:Thecc1EG012743" mRNA complement(5654309..5655459) /locus_tag="TCM_012743" /product="Calcium-binding EF-hand family protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G18210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019204t1" /inference="similar to AA sequence:TAIR:AT1G18210.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7815t1" CDS complement(5654763..5655272) /locus_tag="TCM_012743" /note="paralog of Thecc1EG019204t1" /codon_start=1 /product="Calcium-binding EF-hand family protein" /protein_id="EOY21292.1" /db_xref="TAIR:AT1G18210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEB3" /translation="MSTTTPSPQPNTSSVYLENMDELQKVFNQFDANKDGKISVSELG DVLKAMGSSYSKEELERVMEDIDTDKDGFINLSEFSAFCRSSSDAVSAASELRDAFDL YDQDKNGLISANELHLVLNRLGLKCSVDDCVRMITSVDSDGDGNVNFEEFEKMMSASA PRIDNGSKP" mobile_element 5659741..5660454 /note="source:CACAO_M_E49559_F88_scaffold_7 6494 7208" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5660494..5660803 /note="source:CACAO_M_E49559_F88_scaffold_7 7187 7473" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5661073..5662500 /note="source:CACAO_M_E49559_F88_scaffold_7 7732 9171" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5665010..5674268 /note="source:CACAO_M_E12456_F86_scaffold_3 1 9259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5674413..5676500) /note="source:CACAO_M_E14113_F106_scaffold_3 10682 12778" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5678229..5679752 /note="source:CACAO_M_E12458_F17_scaffold_3 1 1524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5680228..5681262 /note="source:CACAO_hAT_E453_scaffold_1 4018 5053" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(5681261..5681804) /note="source:scaffold_1_CACTA_0009 2220 2729" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5681801..5682410 /note="source:CACAO_Again_on_S_E75_scaffold_2 6402 7017" /mobile_element_type="transposon:TIR/hAT" mobile_element 5682458..5682801 /note="source:CACAO_hAT_E654_scaffold_2 4658 5015" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(5683240..5683404) /note="source:CACAO_hAT_E2577_scaffold_6 116 284" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(5683282..5683341) /note="source:scaffold_5_CACTA_0610 7390 7616" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5683342..5683473 /note="source:CACAO_hAT_E654_scaffold_2 5301 5456" /mobile_element_type="transposon:TIR/hAT" mobile_element 5683755..5686895 /note="source:CACAO_M_E12459_F328_scaffold_3 1 3141" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5687116..5688003) /note="source:scaffold_3_CACTA_0384 9446 10334" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5688005..5688641) /note="source:scaffold_3_CACTA_0384 7861 8480" /mobile_element_type="transposon:TIR/CACTA" gene complement(5689876..5690541) /locus_tag="TCM_012746" /note="dbxref CacaoGD:Thecc1EG012746" mRNA complement(5689876..5690541) /locus_tag="TCM_012746" /product="H0502G05.11 protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002930t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(5690133..5690495) /locus_tag="TCM_012746" /note="paralog of Thecc1EG002930t1" /codon_start=1 /product="H0502G05.11 protein" /protein_id="EOY21293.1" /translation="MIDPLLNTTNPSIIGNLITVTPSTNTQSLVTKEELEKLLDQKNE SLNFSEFDLKLPYFAKVIAKSYPKDYNNLKFKQFNGKIDNAGEHVMKFMETFRVAGLD DDLKLTEFFESLTKKAYT" mobile_element complement(5691240..5691287) /note="source:scaffold_4_CACTA_0502 2355 2401" /mobile_element_type="transposon:TIR/CACTA" gene complement(5691946..5703300) /locus_tag="TCM_012747" /note="dbxref CacaoGD:Thecc1EG012747" mRNA complement(join(5691946..5694877,5703241..5703300)) /locus_tag="TCM_012747" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016661001" /inference="similar to AA sequence:Phytozome:GSVIVT01016661001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1967t1" CDS complement(5692747..5694819) /locus_tag="TCM_012747" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /protein_id="EOY21294.1" /db_xref="Phytozome:GSVIVT01016661001" /db_xref="TAIR:AT3G18020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LSK8" /translation="MPATNSKTFVEACKATMILTKLNLPSLPKSPTSPLAVHFSTSSL SHLQQPITNKPYWATKIHNLCTKHRNVDEAISLLDTLCLHGYRPDYLNLSSIIHALCD SNRFSEAHHRFLLSLSSHLIPDERTCNVLIARLLHSKTPHSTLHVIRSLLNVKAQFVP SLTNFNRLIDQFCADLRVDIGHRLFFYMKSKGQLPNAVTYTTLISGYVGIGDLGVAFK LFDEMRACGVFPNSLTYSVLICGVLMKRDVANGKELMDKLWDRMKDEKEEPAVNSAAF ANLIDCLCREGYFNEVFRIAESMPQGKSVSEEFAYGHMIDSLCRAGRNHGASRVVYMM RKKDFVPSSVSYNSIIHGLCKEGGCMRAYQLFEEGIEFGYLPSEHTYKILVEGLCRES DFHKARQVLQFMLNKKGLDRTRIYNIYLRALCLINNNPTELLNILVSMLQNQCQPDVI TLNTVINGFRKMGRMDEALKVLSDMTNGKFSAPNEVTFTTVICGLLDVGRTVEALDVL NRIMPERGLRPGVVTYNAVLCGFFKTQHANEAMGVYNCMVNEGVTANSTTYAIVVDGL CQSGQIEEAKKFWDDVIWPSQIHDDFVYASILKGLCHAGHFNQACHFLYELVDSGVTP NIVSYNIVIDKACKLGLRKEAYQIVGEMRKNGLEPDAVTWRILEKLHGNVRKTLFIED SPLKYEGL" mobile_element complement(5697699..5697865) /note="source:scaffold_1_CACTA_0009 2570 2729" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5700676..5700989) /note="source:CACAO_Mutator_E592_scaffold_3 17164 17476" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5700990..5701024 /note="source:scaffold_4_CACTA_0482 17169 17511" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5702250..5702357) /note="source:CACAO_M_E14113_F106_scaffold_3 13785 13901" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(5703693..5724899) /locus_tag="TCM_012750" /note="dbxref CacaoGD:Thecc1EG012750" mRNA complement(join(5703693..5704891,5705152..5705520, 5724866..5724899)) /locus_tag="TCM_012750" /product="Pathogenesis-related thaumatin superfamily protein" /inference="alignment:exonerate- protein:2:ricco:28828.m000071" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006654t5" /inference="similar to AA sequence:ricco:28828.m000071" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8308t1" CDS complement(join(5704209..5704891,5705152..5705296)) /locus_tag="TCM_012750" /note="dbxref ricco:28828.m000071; paralog of Thecc1EG006654t5" /codon_start=1 /product="Pathogenesis-related thaumatin superfamily protein" /protein_id="EOY21295.1" /db_xref="TAIR:AT1G18250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P50699" /translation="MGTRPLFVTLLNPLSFTLHRTSQASAMEAMLRSLLTFTLFTLLF SHISVEVSATTITFYNKCPHPVWPGIQPSAGKPLLARGGFKLPPNKAYSMRLPPLWSG RFWGRHGCSFDASGRGRCATGDCGGSLFCNGLGGAPPATLAEITLGQEQDFYDVSLVD GYNIAMSITPFKGSGKCSYAGCVSDLNLMCPVGLQVRSRDNKRVLACKSACFAFNSPR YCCTGSFGSPQSCKPTAYSKIFKAACPKAYSYAYDDPTSIATCTRGSYLVTFCPHRR" gene 5706736..5707442 /locus_tag="TCM_012751" /note="dbxref CacaoGD:Thecc1EG012751" mRNA 5706736..5707442 /locus_tag="TCM_012751" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS 5706822..5707229 /locus_tag="TCM_012751" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21296.1" /translation="MNLGIETMKEKSRLQMHSERVRNLGNVIAETRSSTLSSRGCQRS QWPFVGDNLSSSQIKGQLKTRPLPFTCCCLPASPYHSFTREQRMRSVLFTRNRSPYSQ FVVIRFPLHPLQLLLARVKWSSVVCTWDDCERH" mobile_element 5714110..5714862 /note="source:CACAO_M_E4753_F17_scaffold_2 7253 7745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5714255..5714921 /note="source:CACAO_Mutator_E1888_scaffold_9 7424 7798" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5715683..5715815) /note="source:scaffold_1_CACTA_0016 2387 2485" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5725842..5728570) /note="source:CACAO_Mutator_E39_scaffold_1 1401 4090" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5726402..5730027) /note="source:scaffold_1_CACTA_0009 9533 13172" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5730017..5731077) /note="source:CACAO_Mutator_E161_scaffold_1 2334 3394" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5730824..5735899) /note="source:scaffold_1_CACTA_0009 1620 7540" /mobile_element_type="transposon:TIR/CACTA" gene complement(5744219..5747309) /locus_tag="TCM_012755" /note="dbxref CacaoGD:Thecc1EG012755" mRNA complement(join(5744219..5745033,5745666..5745745, 5746090..5746401,5746549..5747214)) /locus_tag="TCM_012755" /product="WUSCHEL, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g33850.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008424001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1991t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1991t2" mRNA complement(join(5744465..5745033,5745666..5745742, 5746090..5746401,5746549..5747309)) /locus_tag="TCM_012755" /product="WUSCHEL, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g33850.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008424001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g1991t2" CDS complement(join(5744515..5745033,5745666..5745742, 5746090..5746401,5746549..5746714)) /locus_tag="TCM_012755" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="WUSCHEL, putative isoform 1" /protein_id="EOY21297.1" /db_xref="Phytozome:GSVIVT01008424001" /db_xref="TAIR:AT3G18010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T1H4" /translation="MWMMGYNDSAEFNMPDSFNGRKLRPLIPRPIPSANNPPCLSRIN GTDFFALNHHLTTGDQNKRDFNTQPVVVSSRWNPTPEQLRTLEELYRRGTRTPTADQI QHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAPDEHSRVDIDIFERKDSG ANKTGYEVEQTKTWTVPTNCSTLAEDSVSIQTAAKAAGAECRADGWIQFDEGELQHRR NIVERNGAWQKMQLSYSCPPSTHQLINNSTAAAATNTATPTAPIPTAIRRMDPKQLIK THDLNIFISPCRENGNVLDHLNSACRNEEDGPGEFQTLQLFPLRSGDGIDNVKEKENE ISVAAVTASLTPYPFFEFLPLKN" CDS complement(join(5744515..5745033,5745666..5745745, 5746090..5746401,5746549..5746714)) /locus_tag="TCM_012755" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="WUSCHEL, putative isoform 2" /protein_id="EOY21298.1" /db_xref="Phytozome:GSVIVT01008424001" /db_xref="TAIR:AT3G18010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T1H4" /translation="MWMMGYNDSAEFNMPDSFNGRKLRPLIPRPIPSANNPPCLSRIN GTDFFALNHHLTTGDQNKRDFNTQPVVVSSRWNPTPEQLRTLEELYRRGTRTPTADQI QHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAPDEHSRVDIDIFERKDSA GANKTGYEVEQTKTWTVPTNCSTLAEDSVSIQTAAKAAGAECRADGWIQFDEGELQHR RNIVERNGAWQKMQLSYSCPPSTHQLINNSTAAAATNTATPTAPIPTAIRRMDPKQLI KTHDLNIFISPCRENGNVLDHLNSACRNEEDGPGEFQTLQLFPLRSGDGIDNVKEKEN EISVAAVTASLTPYPFFEFLPLKN" mobile_element complement(5747770..5747863) /note="source:scaffold_1_CACTA_0016 6343 6434" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5751006..5751079) /note="source:CACAO_M_E58877_F5_scaffold_9 8332 8405" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5753354..5755011) /locus_tag="TCM_012757" /note="dbxref CacaoGD:Thecc1EG012757" mRNA complement(join(5753354..5754417,5754891..5755011)) /locus_tag="TCM_012757" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(5753589..5754041) /locus_tag="TCM_012757" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21299.1" /translation="MHLHSMAFILVNGSTTALFRTKLRFWQSDPHSFFSSFIMAVTTL HLLLTRAKQLNYLHGITLKGLGLTISQLHFADDTIIFVEPRVSAMMNIKRLLCCVELI SRLKIYFGKSCVYLVGVDQTVCNDMANILSCRVGACFSLILACRWELI" gene 5756360..5758759 /locus_tag="TCM_012758" /note="dbxref CacaoGD:Thecc1EG012758" mRNA join(5756360..5756826,5757100..5757369,5757598..5758759) /locus_tag="TCM_012758" /product="Beta-6 tubulin" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400052131.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040995t1" /inference="similar to AA sequence:frave:gene07781" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2664t1" CDS join(5756433..5756826,5757100..5757369,5757598..5758271) /locus_tag="TCM_012758" /note="dbxref frave:gene07781; paralog of Thecc1EG040995t1" /codon_start=1 /product="Beta-6 tubulin" /protein_id="EOY21300.1" /db_xref="TAIR:AT5G12250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q01GL4" /translation="MREILHIQGGQCGNQIGSKFWEVVCGEHGIDPTGGYTGNSELQL ERISVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWA KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLA TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGKMSTKEVDEQMMNVQ NKNSSYFVEWIPNNVKSSVCDIPPQGLSMASTFIGNSTSIQEMFRRVNEQFTAMFRRK AFLHWYTGEGMDEMEFTEAESNMSDLVAEYQQYQDATADEDDVYEEDDGDGEN" mobile_element complement(5758817..5758955) /note="source:scaffold_2_CACTA_0273 161 301" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5758932..5759065) /note="source:CACAO_M_E52239_F256_scaffold_7 6335 6459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5758960..5761567) /note="source:scaffold_5_CACTA_0596 5577 8172" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5761591..5764359) /note="source:scaffold_5_CACTA_0613 7893 10642" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5764352..5766415 /note="source:CACAO_M_E3248_F5_scaffold_1 1650 3670" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5766465..5767518) /note="source:INTACT597_F267_scaffold_2-int 5756 6660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5767527..5768053) /note="source:scaffold_5_CACTA_0611 12461 12983" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5768077..5768994) /note="source:scaffold_9_CACTA_0929 3222 4141" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5768995..5773655 /note="source:CACAO_M_E12463_F12_scaffold_3 1 4652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5773756..5782238 /note="source:CACAO_M_E12463_F12_scaffold_3 4653 13135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5782239..5785217) /note="source:scaffold_9_CACTA_0929 232 3217" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5788898..5792457 /note="source:CACAO_on_S_E176_scaffold_5 1 3594" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5792446..5792959) /note="source:CACAO_on_E193_scaffold_6 4094 4609" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5792528..5793517 /note="source:CACAO_on_S_E176_scaffold_5 3921 4913" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5793528..5794130) /note="source:CACAO_on_E193_scaffold_6 2814 3414" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5796779..5799540) /note="source:CACAO_on_E193_scaffold_6 58 2818" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5799432..5800222 /note="source:scaffold_1_CACTA_0009 13064 13838" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5800467..5803315 /note="source:CACAO_M_E12467_F15_scaffold_3 1 2849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5803206..5803327) /note="source:INTACT646_F284_scaffold_3-int 4557 4679" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5805232..5811516 /locus_tag="TCM_012767" /note="dbxref CacaoGD:Thecc1EG012767" mRNA join(5805232..5806158,5806673..5806914,5807295..5807417, 5807555..5807671,5807788..5807970,5808526..5808667, 5808894..5809297,5811480..5811516) /locus_tag="TCM_012767" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:frave:gene09387.2" /inference="similar to AA sequence:frave:gene09387" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09370t00001" mRNA join(5805550..5806158,5806673..5806914,5807295..5807417, 5807555..5807671,5807788..5807970,5808526..5808667, 5808901..5808929) /locus_tag="TCM_012767" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:frave:gene09387.2" /inference="similar to AA sequence:frave:gene09387" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc901t6; inference alignment:Newbler:10:TSA:cgbaL_g09370t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc889t1_C2" CDS join(5805744..5806158,5806673..5806914,5807295..5807417, 5807555..5807671,5807788..5807970,5808526..5808667, 5808894..5809078) /locus_tag="TCM_012767" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene09387" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21301.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HW53" /translation="MVCPLTRTWKLTAATSGYCSNSTVFFLSTTSHPQNRRQSLAVLS FDPTSSSSLSSSCSNSPVTAYSTNKKYVPIARSDASCLADVHSDDKVEKETSTTKNVE IEEKLVVRKQPLWQKLLFASKKIRSIVLLNFITIVYASDIPVIKTVETIMDPAPFSAV RFVMSAIPFLPFVLRARDDVHIRKAGIELGLWVSLGYFVEALGLLTADAGRASFISLF TVIVVPMLDSMLGAIVPARTWFGILMSALGVAMLECSGSPPNFGDLLSFLSAIFFGIH MLRTEHLSRSTKEENFLALLGYEVGVVALFSTLWVVIGGWFDGTQDFDKSSWTWELLW DWMVAFPWVPALYTGIFSTGLCLWIEIAAMREVSATETAIIYGMEPVWGAAFAWFLLG ERWGTTGWIGAALVLGGSLIVQIFGSSATKGSVEVERGNRKGNLLLVSEVDKGKLQKK LSTSPIVVRSRADMMDMF" CDS join(5805744..5806158,5806673..5806914,5807295..5807417, 5807555..5807671,5807788..5807970,5808526..5808667, 5808901..5808905) /locus_tag="TCM_012767" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene09387" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21302.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HW53" /translation="MVCPLTRTWKLTAATSGYCSNSTVFFLSTTSHPQNRRQSLAVLS FDPTSSSSLSSSCSNSPVTAYSTNKKYVPIARSDASCLADVHSDDKVEKETSTTKNVE IEEKLVVRKQPLWQKLLFASKKIRSIVLLNFITIVYASDIPVIKTVETIMDPAPFSAV RFVMSAIPFLPFVLRARDDVHIRKAGIELGLWVSLGYFVEALGLLTADAGRASFISLF TVIVVPMLDSMLGAIVPARTWFGILMSALGVAMLECSGSPPNFGDLLSFLSAIFFGIH MLRTEHLSRSTKEENFLALLGYEVGVVALFSTLWVVIGGWFDGTQDFDKSSWTWELLW DWMVAFPWVPALYTGIFSTGLCLWIEIAAMREVSATETAIIYGMEPVWGAAFAWFLLG ERWGTTGWIGAALVLA" mobile_element 5811674..5811753 /note="source:CACAO_M_E1841_F5_scaffold_1 3095 3175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5813036..5813109 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4126 4200" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5820372..5825586) /locus_tag="TCM_012768" /note="dbxref CacaoGD:Thecc1EG012768" mRNA complement(join(5820372..5820786,5820868..5820942, 5821043..5821099,5821204..5821365,5821707..5821987, 5822467..5822608,5822704..5822814,5822925..5823068, 5823640..5823777,5823870..5824007,5824874..5824998, 5825178..5825586)) /locus_tag="TCM_012768" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04540.1" /inference="similar to AA sequence:ricco:28102.m000110" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2893t1; inference alignment:Newbler:10:TSA:cgbaP2_g00815t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc514t9_C2" mRNA complement(join(5820487..5820786,5820868..5820942, 5821043..5821096,5821204..5821365,5821707..5821987, 5822467..5822608,5822704..5822814,5822925..5823068, 5823640..5823777,5823870..5824007,5824874..5824998, 5825178..5825463)) /locus_tag="TCM_012768" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04540.1" /inference="similar to AA sequence:ricco:28102.m000110" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00815t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00815t00001" CDS complement(join(5820688..5820786,5820868..5820942, 5821043..5821096,5821204..5821365,5821707..5821987, 5822467..5822608,5822704..5822814,5822925..5823068, 5823640..5823777,5823870..5824007,5824874..5824998, 5825178..5825190)) /locus_tag="TCM_012768" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28102.m000110" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY21303.1" /db_xref="TAIR:AT3G18000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FR44" /translation="MAANGVVADEREVQKDYWMEHSLDLTVEAMMLDSKAADLDKEER PEVLSLLPPYEGKSILELGAGIGRFTGELAQKAGHVIALDFIESVIKKNESINGHYKN AKFLCADVTSPDLKFSEGSLDLIFSNWLLMYLSDKEIENLAERMVKWLKVGGYIFFRE SCFHQSGDCKRKHNPTHYREPRFYTKVFKECHATDTSGNSFELSLVSCKCIGAYVRNK RNQNQICWIWQKVSSDNDRGFQRFLDTVQYKCSGILRYERVFGEGFVSTGGIETTKEF VGKLDLKPGQKVLDVGCGIGGGDFYMAEKFDVHVVGIDLSINMISFALERAIGMNCSV EFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFYKWLKPGGKVLISDYCKNA GTPSSEFAEYIEQRGYDLHDVEAYGQILSDAGFDEVIAEDRTEQFLQVLQRELNEVEK DKDAFVSSFSQEDYDDILGGWKAKLIRSSSGEQRWGLFIAKKN" CDS complement(join(5820688..5820786,5820868..5820942, 5821043..5821099,5821204..5821365,5821707..5821987, 5822467..5822608,5822704..5822814,5822925..5823068, 5823640..5823777,5823870..5824007,5824874..5824998, 5825178..5825190)) /locus_tag="TCM_012768" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28102.m000110" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /protein_id="EOY21304.1" /db_xref="TAIR:AT3G18000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FR44" /translation="MAANGVVADEREVQKDYWMEHSLDLTVEAMMLDSKAADLDKEER PEVLSLLPPYEGKSILELGAGIGRFTGELAQKAGHVIALDFIESVIKKNESINGHYKN AKFLCADVTSPDLKFSEGSLDLIFSNWLLMYLSDKEIENLAERMVKWLKVGGYIFFRE SCFHQSGDCKRKHNPTHYREPRFYTKVFKECHATDTSGNSFELSLVSCKCIGAYVRNK RNQNQICWIWQKVSSDNDRGFQRFLDTVQYKCSGILRYERVFGEGFVSTGGIETTKEF VGKLDLKPGQKVLDVGCGIGGGDFYMAEKFDVHVVGIDLSINMISFALERAIGMNCSV EFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFYKWLKPGGKVLISDYCKNA GTPSSEFAEYIEQRGYDLHDVEAYGQQILSDAGFDEVIAEDRTEQFLQVLQRELNEVE KDKDAFVSSFSQEDYDDILGGWKAKLIRSSSGEQRWGLFIAKKN" mobile_element complement(5827756..5827784) /note="source:CACAO_M_S_E83691_F15_scaffold_6 2754 2784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5827785..5830602 /note="source:CACAO_M_E12470_F15_scaffold_3 1 2818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5839368..5839903) /note="source:CACAO_M_E11098_F15_scaffold_2 7146 7680" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5839904..5841010 /note="source:CACAO_Mutator_E1888_scaffold_9 5812 7799" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5841009..5841927) /note="source:CACAO_M_E11098_F15_scaffold_2 6239 7151" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5841913..5842438) /note="source:scaffold_8_CACTA_0859 16514 17041" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5847995..5848877) /note="source:CACAO_M_E1841_F5_scaffold_1 15917 16662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5848406..5851028) /note="source:scaffold_6_CACTA_0711 3580 6187" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5851557..5851636) /note="source:CACAO_Mariner_E180_scaffold_6 1519 1600" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(5857452..5860743) /note="source:scaffold_2_CACTA_0253 5716 8984" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5862293..5863760 /note="source:CACAO_M_E12473_F215_scaffold_3 1 1468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5863761..5865907) /note="source:INTACT714_F310_scaffold_9-int 642 2787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5864914..5866332 /note="source:scaffold_8_CACTA_0859 16513 17934" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5869277..5869910) /note="source:scaffold_2_CACTA_0262 254 883" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5872057..5872831 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17254 17965" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5872854..5874935) /note="source:CACAO_M_E69275_F82_scaffold_9 1239 3321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5875036..5876223) /note="source:CACAO_M_E59482_F82_scaffold_9 1 1208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5876224..5876250 /note="source:INTACT224_F176_scaffold_8-int 2545 2585" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5876628..5876686) /note="source:CACAO_Mariner_E180_scaffold_6 1534 1595" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 5878513..5883090 /note="source:INTACT224_F176_scaffold_8-int 4172 8745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5882869..5883115) /note="source:CACAO_M_E43251_F322_scaffold_5 5622 5872" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5883087..5883495 /note="source:CACAO_M_E69460_F12_scaffold_9 15912 16320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5883638..5885534) /note="source:CACAO_M_S_E38315_F276_scaffold_4 8129 9989" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5885527..5885587) /note="source:INTACT1313F_F380_scaffold_7-int 1313 1371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5886809..5887133) /note="source:INTACT1313F_F380_scaffold_7-int 14514 14826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5887118..5887773 /note="source:INTACT61_F128_scaffold_2-int 2840 3585" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5887418..5894670) /note="source:INTACT157_F155_scaffold_1-int 3857 11083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5894749..5896668) /note="source:CACAO_M_S_E38315_F276_scaffold_4 8129 9989" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5896652..5896855 /note="source:INTACT554_F250_scaffold_7-int 16456 16632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5896661..5896723) /note="source:INTACT1313F_F380_scaffold_7-int 1311 1371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5897820..5898161) /note="source:INTACT1313F_F380_scaffold_7-int 14624 14829" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5899784..5914258) /locus_tag="TCM_012777" /note="dbxref CacaoGD:Thecc1EG012777" mRNA complement(join(5899784..5900005,5903800..5904061, 5904206..5904250,5904317..5904985,5914115..5914258)) /locus_tag="TCM_012777" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019530t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(5903829..5904061,5904206..5904250, 5904317..5904689)) /locus_tag="TCM_012777" /note="paralog of Thecc1EG019530t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21305.1" /translation="MLCFHYGKFKHGSEFCLVRQKEQKGLLEEQVTKLAQKKKNLERD YESLHHGSWMVAKKIYRKNNGNKAEGGTKSKPSMSPQERNSKDAVKQSSRVYIIIDEG NTPDAKDFVPNTLQKGAMEKVIMTSVSNRNTTASKAKVEINLANHTRTETTPISTHRP LPQKRANVENIGVGINGVARERESLAVDESSHVRIEEYTTSIEMELEIEEKDIMQY" mobile_element 5910183..5913275 /note="source:CACAO_M_E12480_F15_scaffold_3 1 3084" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5914127..5914587) /note="source:INTACT591_F264_scaffold_1-int 18893 19365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5914616..5916261 /note="source:INTACT591_F264_scaffold_1-int 1 1634" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5919437..5919530) /note="source:INTACT212_F171_scaffold_10-int 4510 4607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5919714..5919823) /note="source:CACAO_M_E11098_F15_scaffold_2 9122 9233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5919756..5920501 /note="source:INTACT591_F264_scaffold_1-int 5676 6430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5920482..5920874 /note="source:INTACT591_F264_scaffold_1-int 18851 19264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5924593..5925339 /note="source:CACAO_M_E5899_F5_scaffold_2 21578 22299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5925674..5928631) /note="source:CACAO_M_E10603_F306_scaffold_2 4816 7762" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5927553..5935508 /note="source:CACAO_M_E58684_F78_scaffold_9 1788 9753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5933693..5936647) /note="source:CACAO_M_E10603_F306_scaffold_2 4816 7771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5941920..5950895) /note="source:CACAO_M_E33228_F15_scaffold_4 478 10792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5950895..5950936 /note="source:INTACT1575F_F97_scaffold_9-int 1483 1528" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5950905..5950946) /note="source:CACAO_M_E69340_F15_scaffold_9 1064 1107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5950935..5952114) /note="source:CACAO_M_E23739_F15_scaffold_4 1 1178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5953257..5955662 /note="source:CACAO_M_E12489_F323_scaffold_3 1 2406" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5956422..5956724 /note="source:CACAO_M_E12489_F323_scaffold_3 2407 2709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5958278..5958434 /note="source:CACAO_M_S_E66657_F76_scaffold_5 8023 8278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5958583..5960449 /note="source:INTACT591_F264_scaffold_1-int 1 1885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5960447..5961729 /note="source:INTACT591_F264_scaffold_1-int 2456 3716" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5961723..5962059 /note="source:INTACT591_F264_scaffold_1-int 4774 5109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5962141..5962212) /note="source:CACAO_M_E11098_F15_scaffold_2 9157 9233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5962166..5962272 /note="source:INTACT591_F264_scaffold_1-int 5105 5233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5962584..5963369 /note="source:INTACT591_F264_scaffold_1-int 5662 6430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5963350..5965347 /note="source:INTACT591_F264_scaffold_1-int 18851 20895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5965347..5966312 /note="source:CACAO_M_S_E52605_F82_scaffold_5 1 1016" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5966270..5967061) /note="source:INTACT215_F33_scaffold_4-int 8021 8816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5966809..5968121 /note="source:CACAO_M_S_E122077_F328_scaffold_10 3945 5021" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5968142..5971228 /note="source:CACAO_M_S_E122077_F328_scaffold_10 5134 8186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5971229..5982494 /note="source:INTACT93_F15_scaffold_3-int 1 11266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5982495..5984479 /note="source:CACAO_M_S_E122077_F328_scaffold_10 1213 3190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5985180..5985259 /note="source:CACAO_M_E3626_F245_scaffold_1 2944 3024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5985230..5985394 /note="source:INTACT39F_F22_scaffold_1-int 5157 5329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5985540..5992855 /note="source:INTACT453_F4_scaffold_9-int 3958 11272" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5992956..5995045) /note="source:CACAO_M_E10476_F82_scaffold_2 786 2875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5995146..5995576) /note="source:CACAO_M_E50407_F82_scaffold_7 330 760" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6000029..6002757) /note="source:INTACT494_F82_scaffold_3-int 5485 8267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6002758..6003614) /note="source:CACAO_M_E4262_F134_scaffold_2 9853 10699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6003623..6006292 /note="source:CACAO_M_E35811_F12_scaffold_5 14717 17384" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6004013..6007275) /note="source:INTACT542_F243_scaffold_4-int 4856 9395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6007276..6009966) /note="source:CACAO_M_E3502_F323_scaffold_1 756 3436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6010070..6010871 /note="source:CACAO_M_E56975_F85_scaffold_8 1925 2734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6011113..6013210 /note="source:CACAO_M_E56825_F323_scaffold_8 1342 3438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6013211..6013602) /note="source:INTACT542_F243_scaffold_4-int 4469 4857" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6013611..6013958 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15581 15991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6014449..6015456 /note="source:CACAO_M_E35811_F12_scaffold_5 14716 15725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6015435..6015467 /note="source:CACAO_M_E49857_F85_scaffold_7 21786 21818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6016944..6017629) /note="source:scaffold_4_CACTA_0503 3229 3914" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6017616..6020027) /note="source:INTACT51F_F15_scaffold_1-int 2476 4885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6020128..6022378) /note="source:CACAO_M_E52760_F33_scaffold_8 1 2268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6023333..6023380) /note="source:scaffold_3_CACTA_0382 1319 1366" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6023373..6024595 /note="source:scaffold_8_CACTA_0859 1631 2857" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6024596..6025364 /note="source:CACAO_M_E56709_F15_scaffold_8 1 769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6025465..6027507) /note="source:CACAO_M_S_E16770_F15_scaffold_2 1 2045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6027508..6029236) /note="source:CACAO_M_E3891_F15_scaffold_1 1 1743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6029237..6029297) /note="source:scaffold_3_CACTA_0382 1271 1331" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6029237..6029278 /note="source:CACAO_M_E14312_F12_scaffold_3 16603 16644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6029575..6030725 /note="source:CACAO_M_E52617_F328_scaffold_7 13021 14048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6030826..6032661 /note="source:CACAO_M_E11415_F328_scaffold_2 18141 20001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6032663..6035510 /note="source:CACAO_M_E1815_F15_scaffold_1 1 2843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6035511..6038912) /note="source:CACAO_M_E57825_F323_scaffold_9 1 3432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6038787..6038933) /note="source:CACAO_Again_on_E14_scaffold_1 673 818" /mobile_element_type="transposon:TIR/hAT" mobile_element 6038913..6039067 /note="source:CACAO_M_E35438_F15_scaffold_5 2711 2842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6039045..6039166 /note="source:CACAO_M_E43781_F323_scaffold_5 3351 3457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6039068..6039151) /note="source:CACAO_M_E5945_F323_scaffold_2 1 85" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6039701..6040428) /note="source:CACAO_M_E11415_F328_scaffold_2 21284 22005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6040429..6043371 /note="source:CACAO_M_E12513_F52_scaffold_3 1 2943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6043372..6044255) /note="source:CACAO_M_S_E14649_F328_scaffold_2 7290 8194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6043469..6045691 /note="source:CACAO_M_E41928_F52_scaffold_5 8816 11011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6045775..6046508) /note="source:INTACT39F_F22_scaffold_1-int 6714 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6046506..6047359) /note="source:CACAO_M_E43590_F7_scaffold_5 2129 3008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6047341..6047386 /note="source:CACAO_M_E53388_F15_scaffold_8 3234 3279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6047347..6050787) /note="source:CACAO_M_E44899_F328_scaffold_6 1 3424" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6050788..6051966 /note="source:INTACT774_F328_scaffold_5-int 1777 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6051967..6054165) /note="source:INTACT39F_F22_scaffold_1-int 4426 6718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6054477..6055095) /note="source:INTACT39F_F22_scaffold_1-int 3568 4165" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6056137..6058264) /locus_tag="TCM_012788" /note="dbxref CacaoGD:Thecc1EG012788" mRNA complement(join(6056137..6056746,6057999..6058264)) /locus_tag="TCM_012788" /product="Ribosomal protein L19e family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021266t1" /inference="similar to AA sequence:TAIR:AT3G16780.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2004t1" CDS complement(join(6056286..6056746,6057999..6058110)) /locus_tag="TCM_012788" /note="paralog of Thecc1EG021266t1" /codon_start=1 /product="Ribosomal protein L19e family protein" /protein_id="EOY21306.1" /db_xref="TAIR:AT3G16780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P36241" /translation="MVSVKLQKRLAASLLKCGKGKVWIDPYEVLQISMANSRMDVRKL VKDSLIIKKPNVTHSRWRCRRAYEAKRKGRQSGYGKRKGTREARLPTKLLWMRKARVL RRLLRKYREMNKIDKHMYHDMYMKAKGGVFKNKRALLESIHKAKTERATDNAVFDQIV AIKVMGKATKERIAWSKETDVLNKATAYLV" gene 6061934..6064995 /locus_tag="TCM_012789" /note="dbxref CacaoGD:Thecc1EG012789" mRNA join(6061934..6062108,6062237..6062286,6062520..6062646, 6063806..6063910,6063992..6064995) /locus_tag="TCM_012789" /product="Galactose mutarotase-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008450001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013886t1" /inference="similar to AA sequence:ricco:29651.m000283" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04190t00001" CDS join(6062003..6062108,6062237..6062286,6062520..6062646, 6063806..6063910,6063992..6064614) /locus_tag="TCM_012789" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29651.m000283; paralog of Thecc1EG013886t1" /codon_start=1 /product="Galactose mutarotase-like superfamily protein isoform 1" /protein_id="EOY21307.1" /db_xref="TAIR:AT3G17940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVH6" /translation="MAGQPEIFELNNGTMQVKITNYGCTITSLSVPDKNGQLADVVLG FDSLEPYVQGASPFFGCIVGRVANRIKEGKFTLNGVEYSLPINNPPNSLHGGFKGFDK KIWEVVEYKKGENPSITFKYHSADGEEGYPGDVSVTATYTLTSSTTMKLEMEAVPENK ATPINLAQHTYWNLAGHNSGNILDHSIQIWASHITPVDQNTIPTGEIMPVKGTPFDFT AEKKVGTSIHEVGLGYDHNYVLGGGEEKLGLKHAAKVKDPSSARVLNLWTSAPGVQFY TANYVNRVVGKGGAVYNKHSGLCLETQGFPNAINQPNFPSVVVQPGNKYQHTMLFEFS VE" mRNA join(<6062257..6062295,6063805..6063910,6063992..6064962) /locus_tag="TCM_012789" /product="Galactose mutarotase-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008450001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045874t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008450001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial5; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc489t3; inference alignment:Newbler:10:TSA:cgbaP1_g04190t00001" CDS join(<6062257..6062295,6063805..6063910,6063992..6064614) /locus_tag="TCM_012789" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG045874t1" /codon_start=1 /product="Galactose mutarotase-like superfamily protein isoform 2" /protein_id="EOY21308.1" /db_xref="Phytozome:GSVIVT01008450001" /db_xref="TAIR:AT3G17940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVH6" /translation="LGFDSLEPYVVNSGGFKGFDKKIWEVVEYKKGENPSITFKYHSA DGEEGYPGDVSVTATYTLTSSTTMKLEMEAVPENKATPINLAQHTYWNLAGHNSGNIL DHSIQIWASHITPVDQNTIPTGEIMPVKGTPFDFTAEKKVGTSIHEVGLGYDHNYVLG GGEEKLGLKHAAKVKDPSSARVLNLWTSAPGVQFYTANYVNRVVGKGGAVYNKHSGLC LETQGFPNAINQPNFPSVVVQPGNKYQHTMLFEFSVE" gene 6065173..6067265 /locus_tag="TCM_012790" /note="dbxref CacaoGD:Thecc1EG012790" mRNA join(6065173..6065455,6065556..6065608,6066433..6066661, 6066753..6066803,6066889..6067265) /locus_tag="TCM_012790" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage" CDS join(6065292..6065455,6065556..6065608,6066433..6066661, 6066753..6066803,6066889..6066970) /locus_tag="TCM_012790" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21309.1" /translation="MTKIKAATASRYTNETERQTDRQALPAIKARMPVDPYRVISAWN NSLHFCNWRRRVVNLNAIELGSITPIELGNGFKTLVFEVMPYTSLECSLHPISSEQQE SRNLNLVQGLNPHSQFDRPVVHRDLKPSNFLLGSDLTAHVSDFLLTSLYIESLKCKNL THLSISDHLGAKQFKEELWDTFHQAIPFSISS" gene complement(6067001..6080613) /locus_tag="TCM_012791" /note="dbxref CacaoGD:Thecc1EG012791" mRNA complement(join(6067001..6067361,6068231..6068271, 6068346..6068445,6069645..6069733,6069846..6070030, 6070213..6070308,6070394..6070478,6070569..6070658, 6071152..6071206,6072741..6072805,6072925..6073017, 6073111..6073185,6079439..6079518,6080558..6080613)) /locus_tag="TCM_012791" /product="Vacuolar protein sorting-associated protein 26 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04670.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s04670.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00145t00001" CDS complement(join(6067334..6067361,6068231..6068271, 6068346..6068445,6069645..6069733,6069846..6070030, 6070213..6070308,6070394..6070478,6070569..6070658, 6071152..6071206,6072741..6072805,6072925..6073017, 6073111..6073185,6079439..6079518,6080558..6080582)) /locus_tag="TCM_012791" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Vacuolar protein sorting-associated protein 26 isoform 1" /protein_id="EOY21310.1" /db_xref="Phytozome:POPTR_0015s04670.2" /db_xref="TAIR:AT1G48550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LP69" /translation="MCLNTIDLVHAIEIKAMPTRIELKLSRPNSIYHPSAVEIEAMPT RIELKLSRPNRIYRPSEPLQGKIVVKSASSISHYGIRMALNGSVNLQVRGGSAGVIES FYGVVKPITILSKSLDIKPSGKIVSGTTEIPFSIILRNSKEDNLERFYETFHGTNISI QYLATVDIMRGYLHKPLSAIVEFIVESDRADLLDQPIPPEIVIFYITQDTQRHPILPE LKSGGFRIIGRISTQRSMLEPLSGELTVEASAIPICSIDIHLLRVESILLGEKIVTET SLIQTTQVADGDVCRNMTLPIYVVLPRLLTCPTVLAGPFSIEFKVAIVISFQSELSKL HPKSDPRTPRLWTAMETLPLELVRTSAFDSNAKD" mRNA complement(join(6067352..6067455,6068231..6068271, 6068346..6068445,6069645..6069733,6069846..6070030, 6070213..6070308,6070394..6070478,6070569..6070658, 6071152..6071206,6072741..6072805,6072925..6073017, 6073111..6073193)) /locus_tag="TCM_012791" /product="Vacuolar protein sorting-associated protein 26 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04670.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s04670.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00145t00003; inference alignment:Newbler:10:TSA:cgbaB_g00145t00001" CDS complement(join(6067437..6067455,6068231..6068271, 6068346..6068445,6069645..6069733,6069846..6070030, 6070213..6070308,6070394..6070478,6070569..6070658, 6071152..6071206,6072741..6072805,6072925..6073017, 6073111..6073167)) /locus_tag="TCM_012791" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Vacuolar protein sorting-associated protein 26 isoform 2" /protein_id="EOY21311.1" /db_xref="Phytozome:POPTR_0015s04670.2" /db_xref="TAIR:AT1G48550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LP69" /translation="MPTRIELKLSRPNRIYRPSEPLQGKIVVKSASSISHYGIRMALN GSVNLQVRGGSAGVIESFYGVVKPITILSKSLDIKPSGKIVSGTTEIPFSIILRNSKE DNLERFYETFHGTNISIQYLATVDIMRGYLHKPLSAIVEFIVESDRADLLDQPIPPEI VIFYITQDTQRHPILPELKSGGFRIIGRISTQRSMLEPLSGELTVEASAIPICSIDIH LLRVESILLGEKIVTETSLIQTTQVADGDVCRNMTLPIYVVLPRLLTCPTVLAGPFSI EFKVAIVISFQSELSKLHPKSDPRTPRLWTAMETLPLELVRTSPSLFV" mobile_element 6068447..6068541 /note="source:CACAO_M_E22186_F143_scaffold_3 9951 10025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6076641..6077991) /note="source:CACAO_M_E11415_F328_scaffold_2 18733 20105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6077992..6078906) /note="source:CACAO_M_E52617_F328_scaffold_7 7874 8776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6081642..6081723 /note="source:INTACT39F_F22_scaffold_1-int 13152 13235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6081654..6081734) /note="source:scaffold_3_CACTA_0382 1837 1918" /mobile_element_type="transposon:TIR/CACTA" gene 6084484..6097498 /locus_tag="TCM_012792" /note="dbxref CacaoGD:Thecc1EG012792" mRNA join(6084484..6084899,6092370..6093140,6093233..6093724, 6094324..6094539,6095401..6095724,6095831..6096073, 6097014..6097498) /locus_tag="TCM_012792" /product="HCP-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04370.1" /inference="similar to AA sequence:ricco:29651.m000287" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04482t00001" mobile_element 6086154..6086174 /note="source:CACAO_M_E33960_F15_scaffold_4 1 6" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(6092583..6093140,6093233..6093724,6094324..6094539, 6095401..6095724,6095831..6096073,6097014..6097217) /locus_tag="TCM_012792" /note="dbxref ricco:29651.m000287" /codon_start=1 /product="HCP-like superfamily protein" /protein_id="EOY21312.1" /db_xref="TAIR:AT1G18260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LM25" /translation="MDLRCHLSLLRLLLSLLLFSLYPLSLHARQFVLVLSQDDLKDAQ NDDASSPDSDASWDDDDFGGTHVRPDDELDPGSWRRLFEPSSTPTSTFDDGTLGSYYA AVEKMISASTNGDARMMEEAAAEIETAANTEGDPHARSVLGFLHGMGMMLERNKAKAF LNHYFAAEGGNAQSMMALAYTYSRQDMYEKAVKLYAELAEIAVNSFLISKDSPVIEPV RIHNGAEENKEALKKSRGEDDEDFQILEYQAQKGNAGAMYKMGLFYYFGLRGLRRDHA KALMWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLSLASKQGLFSAYNGMG YLYVKGYGVEKKNYTKAKEYFERAADNEDAGGHYNLGVMYLKGIGVKKDVKIACKCFI VAANAGQPKAFYQLAKMFHTGVGLKKNLPMATALYKLVAERGPWSSLSRWALESYLKG DVGKAFLLYSRMAELGYEIAQSNAAWILDKYGERSMCMGESGLCTDAERHQRAHSLWW QASEQGNEHAALLIGDAYYYGRGTVRDYERAAEAYIHAKSQSNAQAMFNLGYMHEHGQ GLPFDLHLAKRYYDQALEIDPAAKLPVTLALTSLWIRKNYADSLLVNIVDSLPEVYPK VEEWVENVIMEEGNATILTLFVCLLTVLYLRERQRRHAAGEVALPNEHDLPAPH" gene complement(6096897..6115014) /locus_tag="TCM_012793" /note="dbxref CacaoGD:Thecc1EG012793" mRNA complement(join(6096897..6098090,6098657..6098809, 6100254..6100315,6100472..6100548,6100662..6100943, 6108762..6108850,6108996..6109060,6110593..6110782, 6114137..6114273,6114682..6114821)) /locus_tag="TCM_012793" /product="Protection of telomeres 1 protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008445001" /inference="similar to AA sequence:Phytozome:GSVIVT01008445001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2215t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2215t6" mRNA complement(join(6097013..6098090,6098657..6098809, 6100257..6100315,6100472..6100548,6100662..6100943, 6108762..6108850,6108996..6109060,6110593..6110782, 6114137..6114273,6114682..6114922)) /locus_tag="TCM_012793" /product="Protection of telomeres 1 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008445001" /inference="similar to AA sequence:Phytozome:GSVIVT01008445001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1081t17; alternateUTRof:Thecc1EG012793t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2215t6" mRNA complement(join(6097395..6098090,6098657..6098809, 6100257..6100315,6100472..6100548,6100662..6100943, 6108762..6108850,6108996..6109060,6110593..6110782, 6114137..6114273,6114682..6115014)) /locus_tag="TCM_012793" /product="Protection of telomeres 1 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008445001" /inference="similar to AA sequence:Phytozome:GSVIVT01008445001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2215t6" CDS complement(join(6097890..6098090,6098657..6098809, 6100257..6100315,6100472..6100548,6100662..6100943, 6108762..6108850,6108996..6109060,6110593..6110782, 6114137..6114273,6114682..6114796)) /locus_tag="TCM_012793" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Protection of telomeres 1 protein isoform 1" /protein_id="EOY21313.1" /db_xref="Phytozome:GSVIVT01008445001" /db_xref="TAIR:AT5G06310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7T1K3" /translation="MDDYKFLKIEDAIACINQKVNLIGAILDFSVPQKTKGTDYFCKL KIIDESHPKCGIPVHLFAQHMDALPQVASIGDIIHLSRVMMKTHEGDVYAIFNKRFSS FALYEGKNGEGFHPYQVSLRFHAREQDEKLIADLRKWLADSKVIDVPINFILLREINE VDTINIACKVLHICEIAKDEWMVFLWDGTDAPPLSIHRKLEDEMHNQLPLHLEPLPLS RDVLCTFPTVGTILRVTIDENCRKYILQLLKIGQWVKLFNVPCKVREGLWYGVLTPST KIQDMPNEDTLISERQSNYDHRLSCKLERMPYWSFPWPSRITEVSCDDVPFATLMDVL TCRKVRKKFRCVVRFVAAIPWQVEDFCSPRGTYRVRFTVEDPTARIHAFAYAEDGEKF FNGYLSADVLSSKLNKLLGVAISADGKEIKDAARNPPWVQCCLISHYLKCCKICDTKL VGQQV" CDS complement(join(6097890..6098090,6098657..6098809, 6100257..6100315,6100472..6100548,6100662..6100943, 6108762..6108850,6108996..6109060,6110593..6110782, 6114137..6114273,6114682..6114796)) /locus_tag="TCM_012793" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Protection of telomeres 1 protein isoform 1" /protein_id="EOY21314.1" /db_xref="Phytozome:GSVIVT01008445001" /db_xref="TAIR:AT5G06310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7T1K3" /translation="MDDYKFLKIEDAIACINQKVNLIGAILDFSVPQKTKGTDYFCKL KIIDESHPKCGIPVHLFAQHMDALPQVASIGDIIHLSRVMMKTHEGDVYAIFNKRFSS FALYEGKNGEGFHPYQVSLRFHAREQDEKLIADLRKWLADSKVIDVPINFILLREINE VDTINIACKVLHICEIAKDEWMVFLWDGTDAPPLSIHRKLEDEMHNQLPLHLEPLPLS RDVLCTFPTVGTILRVTIDENCRKYILQLLKIGQWVKLFNVPCKVREGLWYGVLTPST KIQDMPNEDTLISERQSNYDHRLSCKLERMPYWSFPWPSRITEVSCDDVPFATLMDVL TCRKVRKKFRCVVRFVAAIPWQVEDFCSPRGTYRVRFTVEDPTARIHAFAYAEDGEKF FNGYLSADVLSSKLNKLLGVAISADGKEIKDAARNPPWVQCCLISHYLKCCKICDTKL VGQQV" CDS complement(join(6097890..6098090,6098657..6098809, 6100254..6100315,6100472..6100548,6100662..6100943, 6108762..6108850,6108996..6109060,6110593..6110782, 6114137..6114273,6114682..6114796)) /locus_tag="TCM_012793" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Protection of telomeres 1 protein isoform 3" /protein_id="EOY21315.1" /db_xref="Phytozome:GSVIVT01008445001" /db_xref="TAIR:AT5G06310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7T1K3" /translation="MDDYKFLKIEDAIACINQKVNLIGAILDFSVPQKTKGTDYFCKL KIIDESHPKCGIPVHLFAQHMDALPQVASIGDIIHLSRVMMKTHEGDVYAIFNKRFSS FALYEGKNGEGFHPYQVSLRFHAREQDEKLIADLRKWLADSKVIDVPINFILLREINE VDTINIACKVLHICEIAKDEWMVFLWDGTDAPPLSIHRKLEDEMHNQLPLHLEPLPLS RDVLCTFPTVGTILRVTIDENCRKYILQLLKIGQWVKLFNVPCKVREGLWYGVLTPST KIQDMPNEDTLISERQSNYDHRLSCKLERMPYWSFPWPSRITEVSCDDVPFATLMDVL TCRKVVRKKFRCVVRFVAAIPWQVEDFCSPRGTYRVRFTVEDPTARIHAFAYAEDGEK FFNGYLSADVLSSKLNKLLGVAISADGKEIKDAARNPPWVQCCLISHYLKCCKICDTK LVGQQV" mobile_element complement(6109250..6109294) /note="source:CACAO_M_E70891_F369_scaffold_10 15751 15795" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6115832..6121162) /locus_tag="TCM_012794" /note="dbxref CacaoGD:Thecc1EG012794" mRNA complement(join(6115832..6116517,6116603..6116701, 6118542..6118658,6119609..6119955,6120169..6120286, 6120640..6121159)) /locus_tag="TCM_012794" /product="Zinc finger (Ran-binding) family protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene09371" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011035t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008444001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b012356t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc560t13" mRNA complement(join(6115912..6116517,6116603..6116701, 6118542..6118658,6119082..6119246,6119609..6119955, 6120169..6120286,6120640..6121162)) /locus_tag="TCM_012794" /product="Zinc finger family protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09371" /inference="similar to AA sequence:Phytozome:GSVIVT01008444001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc560t13" CDS complement(join(6116397..6116517,6116603..6116701, 6118542..6118658,6119609..6119955,6120169..6120286, 6120640..6121010)) /locus_tag="TCM_012794" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011035t1" /codon_start=1 /product="Zinc finger (Ran-binding) family protein, putative isoform 2" /protein_id="EOY21317.1" /db_xref="Phytozome:GSVIVT01008444001" /db_xref="TAIR:AT1G48570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SJB9" /translation="MSALRSLLFGTSVFRAQKPLFLPFPSQLLSSKPFPTLALRFHRH TSSAAALDTTLNANSTELLDSASEPHPWPEWVTFVDRLKSKGYLVEATAATADAGTDY KDMNLLKDACLSFARDRYDLFKLLSTNEIETVVGSGCPNLFRKAVNSAKRLRAYVRLD EGDVCSTCNLRGSCDRAYVILKESEGASRTVDIVRILLSYALDPIVISGGEKPPGREH IDVSARNLLSDLTKLSETSPAPELPRPAAKASPRKEKTISGNDDEVFQNVEMKRGDWM CPKCNFMNFSRNIRCLKCKAEGPKKVVTDDIQMKKGDWNCPECGFMNFASNRKCLRCQ EARPKRQLNPGEWECPSCDFLNYRRNKVCLKCNHDRPKEQTKEYNEHTWRRPLQYN" CDS complement(join(6116397..6116517,6116603..6116701, 6118542..6118658,6119082..6119246,6119609..6119955, 6120169..6120286,6120640..6121010)) /locus_tag="TCM_012794" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zinc finger family protein, putative isoform 1" /protein_id="EOY21316.1" /db_xref="Phytozome:GSVIVT01008444001" /db_xref="TAIR:AT1G48570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SJB9" /translation="MSALRSLLFGTSVFRAQKPLFLPFPSQLLSSKPFPTLALRFHRH TSSAAALDTTLNANSTELLDSASEPHPWPEWVTFVDRLKSKGYLVEATAATADAGTDY KDMNLLKDACLSFARDRYDLFKLLSTNEIETVVGSGCPNLFRKAVNSAKRLRAYVRLD EGDVCSTCNLRGSCDRAYVILKESEGASRTVDIVRILLSYALDPIVISGGEKPPGREH IDVSARNLLSDLTKLSETSPAPELPRPAAKASPRKEKTISGNDDEVFQNVEMKRGDWM CPKTSCSFNNRPVLLVDCRCNFLNFSKNLQCLKCKEDGPKNVGGDETEMKKGDWICPE CNFMNFSRNIRCLKCKAEGPKKVVTDDIQMKKGDWNCPECGFMNFASNRKCLRCQEAR PKRQLNPGEWECPSCDFLNYRRNKVCLKCNHDRPKEQTKEYNEHTWRRPLQYN" gene 6122084..6133110 /locus_tag="TCM_012795" /note="dbxref CacaoGD:Thecc1EG012795" mRNA join(6122084..6122775,6123855..6123989,6124141..6124228, 6125876..6125970,6126981..6127148,6127446..6127554, 6127673..6127730,6127871..6127948,6132148..6132294, 6132838..6133110) /locus_tag="TCM_012795" /product="Glutathione S-transferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb06g003270.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034263t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04410.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc614t2" mRNA join(6122244..6122775,6123855..6123989,6124141..6124228, 6125876..6125970,6126981..6127148,6127446..6127730, 6127871..6127948,6132148..6132294,6132823..6132940) /locus_tag="TCM_012795" /product="Glutathione S-transferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb06g003270.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034263t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04410.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc614t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc614t2" CDS join(6122430..6122775,6123855..6123989,6124141..6124228, 6125876..6125970,6126981..6127148,6127446..6127554, 6127673..6127730,6127871..6127948,6132148..6132294, 6132838..6132882) /locus_tag="TCM_012795" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG034263t1" /codon_start=1 /product="Glutathione S-transferase family protein isoform 1" /protein_id="EOY21318.1" /db_xref="Phytozome:POPTR_0012s04410.1" /db_xref="TAIR:AT5G42150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHX0" /translation="MRGASSFTSSVLSRTLATVHDRGAAAALQPRSLRVALFCSSRTN NSYTRLRWFSPVLTSFSRSSARAVSLGLAGAVASVATAASVYAKEPPPAEIMPKDVVL YQYEACPFCNKVKAFLDYYDIPYKVVEVNPISKKEIKWSDYKKVPILMVDGEQLVDSS AIIDKLSEKVLPKKMINSGANEDEETKWRRWVDNHLVHVLSPNIYRNTSEALESFDYI TSNGNFSFTEKITVKYAGAAAMYFVSKNLKKKYNITDERAALYEAAETWVDALNGRNF LGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGECFGSQNNFCDQVMNDHKVFWR VMETEGERDFVGWPLKTVWRSNKLKLENVKTKLYELFEQYASNTHASSTYSHSTSNLP KQAGGGTKPKGSKIFNSWRHHYCPNKTQMF" CDS join(6122430..6122775,6123855..6123989,6124141..6124228, 6125876..6125970,6126981..6127148,6127446..6127606) /locus_tag="TCM_012795" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034263t1" /codon_start=1 /product="Glutathione S-transferase family protein isoform 2" /protein_id="EOY21319.1" /db_xref="Phytozome:POPTR_0012s04410.1" /db_xref="TAIR:AT5G42150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHX0" /translation="MRGASSFTSSVLSRTLATVHDRGAAAALQPRSLRVALFCSSRTN NSYTRLRWFSPVLTSFSRSSARAVSLGLAGAVASVATAASVYAKEPPPAEIMPKDVVL YQYEACPFCNKVKAFLDYYDIPYKVVEVNPISKKEIKWSDYKKVPILMVDGEQLVDSS AIIDKLSEKVLPKKMINSGANEDEETKWRRWVDNHLVHVLSPNIYRNTSEALESFDYI TSNGNFSFTEKITVKYAGAAAMYFVSKNLKKKYNITDERAALYEAAETWVDALNGRNF LGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYSRMEEVVGESSRIKA" mobile_element complement(6128863..6128961) /note="source:CACAO_LINE_E_211_scaffold_8 7197 7288" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 6129374..6129518 /note="source:INTACT51_F23_scaffold_9-int 1284 1427" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6130591..6132884 /note="source:INTACT51_F23_scaffold_9-int 3135 5444" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6132934..6133307 /note="source:INTACT51_F23_scaffold_9-int 5438 5812" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(6133894..6143029) /locus_tag="TCM_012797" /note="dbxref CacaoGD:Thecc1EG012797" mRNA complement(join(6133894..6134169,6137148..6137963, 6138705..6139217,6142929..6143029)) /locus_tag="TCM_012797" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400044351" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011925t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040846" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS complement(join(6137185..6137963,6138705..6138957)) /locus_tag="TCM_012797" /note="paralog of Thecc1EG011925t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21320.1" /db_xref="Phytozome:PGSC0003DMP400040846" /translation="MSQNDGSNRFQALVVETAADENENAEQGKTKWVNSTQQPANVLV LQTLDQARIQADNGVVSLMQAELPCGERLDLNSSKDEADKISCEVVVDHIQCLHIQLS FPWLPDPVFASVIYAKCTRLERNASWNCLRNLSTNITNAWLVGGDFNVILNREESLYG AASHDGSMEDFATTLLDCGLVDGGYEGTQFTWTNNHMFQRLDRVVYNYHCSEIFASTR IQHFNRDGSNHNPLLVSCSTSSNKGPSFRFLHAWTKHHAFLSSVESNWKQPIQGSGLH AFWGKQLRLKNSLKKYLKWWNRDIFGDIFSNLKAAENHAVVCETTFQKDPSSVNREAM HWSYANLSH" mobile_element 6139064..6143266 /note="source:CACAO_M_E12523_F23_scaffold_3 1 4203" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(6140791..6143029) /locus_tag="TCM_012799" /note="dbxref CacaoGD:Thecc1EG012799" mRNA complement(6140791..6143029) /locus_tag="TCM_012799" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042562t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034745001" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(6140958..6142751) /locus_tag="TCM_012799" /note="paralog of Thecc1EG042562t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21321.1" /db_xref="Phytozome:GSVIVT01034745001" /translation="MKAFLRGVNLWNAIEFETELPVLKENASQAQVKQYEKDIAKRYR ALSFIHSVVSESVFNKIMGCETANEAWSKLEKEFLGSARSKQVRLQNLIRKYELLIMK ENQTVGEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERFDPAITSLEQVKDITE LSISYLVSALEVDEQRKEARRDERVDHALVARAKGKAPADPSFKKNSNENKEKDKNGT AIGRSQNKRGKFLVCPYCKKRNHSEAYCWFRPGVKCNACKQLGHLEKVCKNKAEAAEK KPQVTKQVEKAEVAEEVLFMTIENSNSADNNHWLLDSACSNHMTSKAELFSELDTDHC FSVKIGNGLILDAVGKGTVAIQIASSTRYVLNVLLVPKTTQNLLRVGQLVDEDYMLVF KNNACTVYEPSGVYIMSVPMVRNCFPVKWGNLCLSATESFSKQTYLWHKRLGHCNYKS LLQVSASGLLLNLPKLHGDGPICSSCQYGKLTRRSFPKASLNRAKHRFELDHSNVAGP MSEPSLNGSKYFAIFIDDMSRMTWIYFIQHKLVVFSIFQKFKAKVENESGYRIKKLRT DNRGEYTSSEFTSYLEKKGIHHQLTAPYCPE" gene 6143543..6144310 /locus_tag="TCM_012800" /note="dbxref CacaoGD:Thecc1EG012800" mRNA join(6143543..6143725,6143900..6144310) /locus_tag="TCM_012800" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2791t2_C2" CDS join(6143581..6143725,6143900..6144165) /locus_tag="TCM_012800" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21322.1" /translation="MHTHATLGLVPLAGALSTNNDLSTVLAIIIRVDFSCRWAFRIEN EIQIVNHILVKASLISIIRGILENFPTTKYWNGCARVTISSSKNMVAGRSLYLIGFRE MGINGGLSLVAIVRKDFLRALCETGDCGYCGGIW" mobile_element 6148699..6149893 /note="source:CACAO_M_E49546_F9_scaffold_7 9221 10407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6154284..6154342) /note="source:INTACT88_F12_scaffold_4-int 13495 13554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6155233..6155325) /note="source:scaffold_6_CACTA_0712 1400 1486" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6158649..6158685 /note="source:INTACT261_F189_scaffold_2-int 960 996" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6160869..6160914) /note="source:INTACT261_F189_scaffold_2-int 205 250" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6161667..6164431 /note="source:CACAO_M_E12524_F73_scaffold_3 1 2723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6166802..6167010) /note="source:CACAO_Mariner_E176_scaffold_6 9347 9556" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(6167062..6167172) /note="source:CACAO_Mariner_E176_scaffold_6 1530 1639" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(6170125..6171459) /locus_tag="TCM_012804" /note="dbxref CacaoGD:Thecc1EG012804" mRNA complement(6170125..6171459) /locus_tag="TCM_012804" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS complement(6170957..6171232) /locus_tag="TCM_012804" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21323.1" /translation="MFERKFVIQLKINHVSTDEQLADTLIKPLQKARFHLLLYKICAS NGYTILQGHNKMLYIIQSFTLGDMRGNSFDPRESSCDPRKSFICRLK" mobile_element complement(6171569..6178752) /note="source:scaffold_5_CACTA_0613 3654 10867" /mobile_element_type="transposon:TIR/CACTA" gene complement(6173489..6179471) /locus_tag="TCM_012805" /note="dbxref CacaoGD:Thecc1EG012805" mRNA complement(join(6173489..6174040,6179446..6179471)) /locus_tag="TCM_012805" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010709t1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1779t2; alternateUTRof:Thecc1EG012805t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2093t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1779t1" mRNA complement(join(6173489..6174040,6178954..6179077, 6179446..6179471)) /locus_tag="TCM_012805" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010709t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1779t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2093t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1779t1" mRNA complement(join(6173489..6174040,6176666..6176736, 6178954..6179077,6179446..6179471)) /locus_tag="TCM_012805" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010709t1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1779t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1779t1" mRNA complement(join(6173489..6174040,6176666..6176747, 6178954..6178979)) /locus_tag="TCM_012805" /product="Uncharacterized protein isoform 3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010709t1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1779t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1779t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2093t3" CDS complement(join(6173637..6174040,6176666..6176736, 6178954..6178964)) /locus_tag="TCM_012805" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010709t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21324.1" /translation="MIYRVEYSWTIIMSYCMEHSKSFILDSGTMVKGKHSKPRLRSTN ASRSMSLPMNTSAFVDLSIQLQMQQVNNDVPFEPPLLGASAEQVENETSTHDSCKSPS IDLGASIDDTSSRSRGRGPGLGLQTPVDPSDRLCMTPIGEKCVILYYNEIVIFVINFN M" CDS complement(join(6173637..6174040,6176666..6176711)) /locus_tag="TCM_012805" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG010709t1" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY21326.1" /translation="MSYCMEHSKSFILDSGTMVKGKHSKPRLRSTNASRSMSLPMNTS AFVDLSIQLQMQQVNNDVPFEPPLLGASAEQVENETSTHDSCKSPSIDLGASIDDTSS RSRGRGPGLGLQTPVDPSDRLCMTPIGEKCVILYYNEIVIFVINFNM" CDS complement(6173637..6174035) /locus_tag="TCM_012805" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010709t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21325.1" /translation="MVKGKHSKPRLRSTNASRSMSLPMNTSAFVDLSIQLQMQQVNND VPFEPPLLGASAEQVENETSTHDSCKSPSIDLGASIDDTSSRSRGRGPGLGLQTPVDP SDRLCMTPIGEKCVILYYNEIVIFVINFNM" CDS complement(6173637..6174035) /locus_tag="TCM_012805" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG010709t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21327.1" /translation="MVKGKHSKPRLRSTNASRSMSLPMNTSAFVDLSIQLQMQQVNND VPFEPPLLGASAEQVENETSTHDSCKSPSIDLGASIDDTSSRSRGRGPGLGLQTPVDP SDRLCMTPIGEKCVILYYNEIVIFVINFNM" gene complement(6175373..6176175) /locus_tag="TCM_012806" /note="dbxref CacaoGD:Thecc1EG012806" mRNA complement(join(6175373..6175683,6175769..6176175)) /locus_tag="TCM_012806" /product="Transposase tnp2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009571t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400054887" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2097t1" CDS complement(join(6175584..6175683,6175769..6176016)) /locus_tag="TCM_012806" /note="paralog of Thecc1EG009571t1" /codon_start=1 /product="Transposase tnp2" /protein_id="EOY21328.1" /db_xref="Phytozome:PGSC0003DMP400054887" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0ZCC1" /translation="MVPHLIWDAITGIYHFFRDLCTIEILVDHMKVLEGKICETICKL KKSFALGFFDFMEHLSIHLPYEAKVDGPDQYRWMYPFERFLQHLKKVKNRALVEGSIC EAYIIEEISSFCS" mobile_element 6179816..6180298 /note="source:scaffold_6_CACTA_0700 7041 7524" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6181552..6182051) /note="source:scaffold_8_CACTA_0857 406 888" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6182052..6183564 /note="source:CACAO_M_S_E120006_F51_scaffold_10 1 1512" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6185028..6185136 /note="source:CACAO_M_E35674_F13_scaffold_5 7629 7761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6188281..6191902 /note="source:INTACT439_F42_scaffold_7-int 1 3620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6191902..6193259 /note="source:CACAO_M_E12525_F273_scaffold_3 1 1358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6193360..6194903 /note="source:CACAO_M_E12525_F273_scaffold_3 1359 2902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6194904..6195390 /note="source:CACAO_M_E52662_F215_scaffold_7 7044 7529" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6195491..6196727 /note="source:CACAO_M_E58440_F42_scaffold_9 4125 5375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6196828..6197949) /note="source:CACAO_M_S_E6027_F12_scaffold_2 5158 6279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6197950..6198001 /note="source:INTACT439_F42_scaffold_7-int 6443 6494" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6198102..6200021) /note="source:CACAO_M_E56778_F42_scaffold_8 1653 3581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6214802..6216242) /note="source:INTACT615_F273_scaffold_2-int 3441 4881" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6217224..6218257) /note="source:CACAO_M_E56826_F244_scaffold_8 4226 5259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6218456..6219091 /note="source:CACAO_M_E50311_F328_scaffold_7 5821 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6218733..6219135) /note="source:CACAO_M_E11415_F328_scaffold_2 9228 9632" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6221153..6233890 /locus_tag="TCM_012813" /note="dbxref CacaoGD:Thecc1EG012813" mRNA join(6221153..6221275,6230557..6230756,6232835..6232891, 6233187..6233890) /locus_tag="TCM_012813" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" mobile_element 6221471..6221837 /note="source:scaffold_4_CACTA_0491 3095 3457" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6222362..6225298 /note="source:INTACT556_F252_scaffold_2-int 8428 11364" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6223707..6234510 /locus_tag="TCM_012814" /note="dbxref CacaoGD:Thecc1EG012814" mRNA join(6223707..6223775,6224375..6224997,6225412..6225540, 6225622..6225842,6226210..6226882,6231352..6231949, 6234145..6234510) /locus_tag="TCM_012814" /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024743.11" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028768t1" /inference="similar to AA sequence:Phytozome:Glyma08g41350.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00004t00031_G4" CDS join(6224503..6224997,6225412..6225540,6225622..6225842, 6226210..6226831) /locus_tag="TCM_012814" /note="paralog of Thecc1EG028768t1" /codon_start=1 /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative" /protein_id="EOY21330.1" /db_xref="Phytozome:Glyma08g41350.1" /translation="MVTLFHDMMHKEVEVYVDDMIVKAHKTEDHATNLERLFKRLRKF QLRLNPTKCTFGVTSEKLLGFVVSERGIEVDPDKVQAIRDLPPPKTQKEVRGFLGRLN YIARFISQLTLKCDLIFKLLRKHNLGAWNEECQVAFDKVKEYLLSLLVLVPPVAGRPL FLYLTICFTYLPREENQMADALATLAAMFNVGTDVKIQPIMINLRECPYPEQSSENDK KTIRRLAMNFFLDGDILYKRSRDQVLLRCADLVEARRIVEEGHEGICGAHASGHMLAR QVIRAGFVPSFKIKHHNSVPYRPKMNGVVETANKNIKRIIEKMTDVYKDWHEKLPFAL HAYRTTVRTSTGATLFSLVYGMEAVFPIEVEIPSLRVLKEVQLEEAEWVNTRYEQLNL IEEKRLTALCHGQLYQKRMMKAYGKKVHPRQFQEGKLILKRILPNQQDPRGKWTLNWE GPFVVKKVFSRGTLILAEMDRREFSNPVNADAVKKYFA" mobile_element complement(6225304..6228631) /note="source:INTACT1391F_F387_scaffold_8-int 1 3352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6228823..6229007 /note="source:INTACT556_F252_scaffold_2-int 15363 15563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6229456..6230523) /note="source:INTACT458_F219_scaffold_7-int 1 1025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6229668..6230527 /note="source:INTACT556_F252_scaffold_2-int 2081 2945" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(6230638..6230756,6232835..6232891,6233187..6233214) /locus_tag="TCM_012813" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21329.1" /translation="MLVVKDSTVFARSATCSSKDVVLVAMTTITLEFTFEEALWGSKP NPAYLAFFGMLRPIRFYKQSYEE" gene complement(6231021..6238728) /locus_tag="TCM_012815" /note="dbxref CacaoGD:Thecc1EG012815" mRNA complement(join(6231021..6231067,6234305..6236356, 6238617..6238728)) /locus_tag="TCM_012815" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene13284" /inference="similar to AA sequence:ricco:29171.m000270" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage" CDS complement(6234864..6236108) /locus_tag="TCM_012815" /note="dbxref ricco:29171.m000270" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY21331.1" /db_xref="TAIR:AT5G23730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6Q3" /translation="MGAFHWTRGPKTASASISISNEWAMKNLSSRLHLPDPVPGRERR DYAKESIAKDKPEGEEDQERARCEWDFSLSTVVSTSAEAAVSDTLGVIEFDPSNTVVA TGGIARKIRIYTLNSLLPQDQSTQGEQNITFLDHVNACEYYICTPAKLSSLRWKPGSG GRLLGSGDYDGVVMEYDLERKLPIFERDEHGGRRVWSVDYSHWDPFVGASGSEDGTMQ MWDPRCGEGGGCVAKVQPALARSSVCCVEFDPFGEALIAAGCADRKAYTYDVRKMVEP LHVYDGHTKTVTYVRFLDAQTMVSAGTDGYLKLWNISDSRLIRTYKGHVNSRSFVGLS VWRHGGLLGSGSENNQVFVYDKRWGEPIWVHGFEPLGRAGGRDHGFVSSVSWRQVHEE QCTLVAGGSNGVLQVFVGRRKT" mobile_element complement(6238389..6239279) /note="source:scaffold_1_CACTA_0011 8164 9047" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6239802..6241134) /note="source:CACAO_M_E11656_F17_scaffold_2 1542 2830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6243027..6245231) /note="source:scaffold_2_CACTA_0253 5719 7918" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6249057..6249757) /note="source:scaffold_2_CACTA_0253 7240 7927" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6252950..6252986) /note="source:scaffold_1_CACTA_0028 1924 1960" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6254303..6255740 /note="source:CACAO_M_S_E16317_F17_scaffold_2 1 1423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6258849..6258934) /note="source:CACAO_M_E70891_F369_scaffold_10 2633 2718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6259873..6260012) /note="source:INTACT231_F12_scaffold_4-int 14119 14260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6260491..6270465) /note="source:CACAO_M_S_E65068_F306_scaffold_5 2 15676" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6262983..6274869 /locus_tag="TCM_012821" /note="dbxref CacaoGD:Thecc1EG012821" mRNA join(6262983..6262991,6266073..6266367,6266486..6267060, 6274757..6274869) /locus_tag="TCM_012821" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040199t1" /inference="similar to AA sequence:Phytozome:Glyma04g32860.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage" CDS join(6266321..6266367,6266486..6266900) /locus_tag="TCM_012821" /note="paralog of Thecc1EG040199t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21332.1" /db_xref="Phytozome:Glyma04g32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BR83" /translation="MSHMPTDQGKTSETIGLPKSAHFLFIHSTYSIGKLAKLYIDKIV RLHGVLVSIVSNRDPRFTSRFWPKFQEALKTNLRFSTTFHPQTDGQSEKTIQTLEDML WACVIDFTGSWDRHLPLVEFAYNNSFQSSIGMAPYEVLYGRKCRTLLYWMK" mobile_element complement(6270590..6270860) /note="source:CACAO_M_E42514_F40_scaffold_5 15510 15780" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6272173..6272853 /note="source:CACAO_M_E70891_F369_scaffold_10 15373 16009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6272671..6273331) /note="source:CACAO_M_E42514_F40_scaffold_5 14550 15207" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6273371..6273452) /note="source:CACAO_M_S_E15173_F4_scaffold_2 9800 9880" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6279004..6279062 /note="source:CACAO_M_E42514_F40_scaffold_5 3391 3450" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6279024..6279063 /note="source:INTACT585_F12_scaffold_8-int 1058 1098" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6291162..6299486) /locus_tag="TCM_012825" /note="dbxref CacaoGD:Thecc1EG012825" mRNA complement(join(6291162..6291203,6294018..6294758, 6295614..6296205,6299436..6299486)) /locus_tag="TCM_012825" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage" CDS complement(join(6294572..6294758,6295614..6295672)) /locus_tag="TCM_012825" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21333.1" /translation="MIQQVIGIHPIGLSMFVTISGASKRNPREAGIKGVFQDSNRDVK IVLSKAIGMGDSNLAKVFAIREAFLFFQPQNGVGASP" mobile_element 6300576..6303543 /note="source:CACAO_M_E43498_F302_scaffold_5 1 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6303979..6307110 /note="source:CACAO_M_E12531_F15_scaffold_3 1 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6314741..6315716) /note="source:INTACT85_F9_scaffold_4-int 500 1445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6315901..6317054 /note="source:INTACT631_F9_scaffold_10-int 1019 2148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6317683..6318166) /note="source:CACAO_M_S_E6076_F9_scaffold_2 9409 9904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6329059..6329154) /note="source:CACAO_M_S_E119615_F3_scaffold_9 1718 1811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6330354..6331746) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18937 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6332220..6332849) /note="source:CACAO_M_S_E4591_F5_scaffold_1 17894 18519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6333165..6336112 /note="source:CACAO_M_S_E31483_F7_scaffold_3 1 2990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6337380..6343324) /note="source:INTACT630_F9_scaffold_5-int 3919 9881" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6347197..6347455) /note="source:INTACT168_F46_scaffold_4-int 4435 4716" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6347569..6349999 /note="source:INTACT259_F188_scaffold_4-int 282 2692" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6350003..6352183) /note="source:INTACT170_F12_scaffold_5-int 4654 6822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6352841..6352948 /note="source:CACAO_M_E47740_F12_scaffold_6 6633 6745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6352928..6354977 /note="source:CACAO_M_S_E84962_F188_scaffold_7 2685 4782" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6354979..6355108 /note="source:CACAO_M_S_E90022_F9_scaffold_8 16275 16401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6360199..6360246) /note="source:INTACT88_F12_scaffold_4-int 15633 15674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6361180..6371519 /note="source:CACAO_M_E12537_F13_scaffold_3 1 10340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6374973..6385973 /note="source:INTACT687_F13_scaffold_3-int 1 11001" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6376088..6387922 /locus_tag="TCM_012831" /note="dbxref CacaoGD:Thecc1EG012831" mRNA join(6376088..6376320,6377020..6377772,6387854..6387922) /locus_tag="TCM_012831" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009024t1" /inference="similar to AA sequence:Phytozome:Glyma11g25770.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS join(6376155..6376320,6377020..6377738) /locus_tag="TCM_012831" /note="paralog of Thecc1EG009024t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21334.1" /db_xref="Phytozome:Glyma11g25770.1" /translation="MAQQKSIVTEGQSTNRPPLFDSSNYPYWSTRCQFTLELLNLAIR VNVSDTFRHETRLRAIDYEMWDVITDGPFIPSTLNVVTNELMPKPRSKWTEAKIKKVQ TNFKAINTLHCALTPTEFNKVSSYTTAKQVWDKLRVIHEGTSQVKKSKIALLTHSYEM FKIEPGEDITSMLNRFTNITNKLSQLGKPILEHEIVKRLLRCLPKNWKPKVTIIREAK DLNVITSDEIYGSLLTHELKLKEEEEEDMREAKEKKKSIAFKANILEEELEELSCDDD EELALVARKFKKLMGRRH" mobile_element complement(6386930..6387597) /note="source:scaffold_8_CACTA_0858 7574 8242" /mobile_element_type="transposon:TIR/CACTA" gene 6391280..6406185 /locus_tag="TCM_012833" /note="dbxref CacaoGD:Thecc1EG012833" mRNA join(6391280..6391708,6393667..6393819,6394403..6394527, 6394965..6395090,6396749..6396931,6397040..6397184, 6397922..6398090,6399092..6399226,6399329..6399529, 6403261..6403388,6403470..6403521,6405066..6405135, 6405520..6406167) /locus_tag="TCM_012833" /product="Amidase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29651.m000292" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007478t1" /inference="similar to AA sequence:ricco:29651.m000292" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2203t2" CDS join(6391506..6391708,6393667..6393819,6394403..6394527, 6394965..6395090,6396749..6396931,6397040..6397184, 6397922..6398090,6399092..6399226,6399329..6399529, 6403261..6403388,6403470..6403521,6405066..6405135, 6405520..6405602) /locus_tag="TCM_012833" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29651.m000292; paralog of Thecc1EG007478t1" /codon_start=1 /product="Amidase family protein isoform 1" /protein_id="EOY21335.1" /db_xref="TAIR:AT3G17970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEC4" /translation="MASHAANLWVLLGLGLAGILLMTKRLKKTIKADFGAFIQKLELL PPPQPAPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPDWVRTHEASSRTSPVVLSLVE GGATCVGKTVVDELAYSIHGENKHYSTPTNPAAPARIPGGSSSGAAVAVAANFVDFSL GIDTLGGVRVPAAFCGVIGFRPSYGVVSHTGIIPVASSLDTVGLLAKDPNILHRVGLV LLQLPFSVQRNPRQILLADDCFQLLKIPMERVSQVVINSTEKLFGRQVLKHENLEDYF SSKVPSLKEFYRQKINVDLKISSIRLLANVAQFLQRYEFKCAHEEWISSEKPVLDSAV STQINETLDLTDKEIEICKSIRNEMRLAVNSLLKDDGILVIPTTAHPPPKLGSKEIFS EDYHNCMFSLLSIASISGCCQVTLPLGYHDNYPVSVSFIARHGGDRFLLDTVQTMYSS LQEHADTVAKSKLSRNAVNQEQSAEVAKEKGNQAYKDKQWQKAVMFYTEAIKLNGNNA TYYSNRAAAYLELGSFLQAETDCTKAIDLDKKNVKAYLRRGTAREMLGYYKEAIEDFR YALVLEPTNKRAALSAERLRKVFQ" mobile_element 6391872..6391944 /note="source:INTACT690_F13_scaffold_1-int 7035 7103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6391884..6391931) /note="source:CACAO_M_E85113_F12_scaffold_10 11806 11853" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(<6393744..6393819,6394403..6394527,6395055..6395090, 6396749..6396931,6397040..6397184,6397922..6398090, 6399092..6399226,6399329..6399529,6403261..6403388, 6403470..6403521,6405066..6405135,6405520..6405916, 6405944..6406185) /locus_tag="TCM_012833" /product="Amidase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29651.m000292" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007478t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008433001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc236t10_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2203t2" mRNA join(<6393744..6393819,6394403..6394527,6395055..6395090, 6397040..6397184,6397922..6398090,6399092..6399226, 6399329..6399529,6403261..6403388,6403470..6403521, 6405066..6405135,6405520..6405916,6405944..6406185) /locus_tag="TCM_012833" /product="Translocon at the outer membrane of chloroplasts 64-III isoform 4" /inference="alignment:exonerate- protein:2:ricco:29651.m000292" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007478t1" /inference="similar to AA sequence:ricco:29651.m000292" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc236t4_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2203t2" mRNA join(<6393744..6393819,6394403..6394527,6395055..6395090, 6396749..6396931,6397040..6397184,6397922..6398090, 6399092..6399226,6399329..6399529,6403261..6403388, 6403470..6403521,6405066..6405543) /locus_tag="TCM_012833" /product="Amidase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29651.m000292" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007478t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008433001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc236t9_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2203t2" CDS join(<6393746..6393819,6394403..6394527,6395055..6395090, 6396749..6396931,6397040..6397184,6397922..6398090, 6399092..6399226,6399329..6399529,6403261..6403388, 6403470..6403521,6405066..6405135,6405520..6405602) /locus_tag="TCM_012833" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG007478t1" /codon_start=1 /product="Amidase family protein isoform 2" /protein_id="EOY21336.1" /db_xref="Phytozome:GSVIVT01008433001" /db_xref="TAIR:AT3G17970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2E5" /translation="PVVLSLVEGGATCVGKTVVDELAYSIHGENKHYSTPTNPAAPAR IPGGSSSGAAVAVAANFVDFSLGIIPVASSLDTVGLLAKDPNILHRVGLVLLQLPFSV QRNPRQILLADDCFQLLKIPMERVSQVVINSTEKLFGRQVLKHENLEDYFSSKVPSLK EFYRQKINVDLKISSIRLLANVAQFLQRYEFKCAHEEWISSEKPVLDSAVSTQINETL DLTDKEIEICKSIRNEMRLAVNSLLKDDGILVIPTTAHPPPKLGSKEIFSEDYHNCMF SLLSIASISGCCQVTLPLGYHDNYPVSVSFIARHGGDRFLLDTVQTMYSSLQEHADTV AKSKLSRNAVNQEQSAEVAKEKGNQAYKDKQWQKAVMFYTEAIKLNGNNATYYSNRAA AYLELGSFLQAETDCTKAIDLDKKNVKAYLRRGTAREMLGYYKEAIEDFRYALVLEPT NKRAALSAERLRKVFQ" CDS join(<6393746..6393819,6394403..6394527,6395055..6395090, 6397040..6397184,6397922..6398090,6399092..6399226, 6399329..6399529,6403261..6403388,6403470..6403521, 6405066..6405135,6405520..6405602) /locus_tag="TCM_012833" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29651.m000292; paralog of Thecc1EG007478t1" /codon_start=1 /product="Translocon at the outer membrane of chloroplasts 64-III isoform 4" /protein_id="EOY21338.1" /db_xref="TAIR:AT3G17970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2E5" /translation="PVVLSLVEGGATCVGKTVVDELAYSIHGENKHYSTPTNPAAPAR IPGGSSSGAAVAVAANFVDFSLGIIPVASSLDTVGQVLKHENLEDYFSSKVPSLKEFY RQKINVDLKISSIRLLANVAQFLQRYEFKCAHEEWISSEKPVLDSAVSTQINETLDLT DKEIEICKSIRNEMRLAVNSLLKDDGILVIPTTAHPPPKLGSKEIFSEDYHNCMFSLL SIASISGCCQVTLPLGYHDNYPVSVSFIARHGGDRFLLDTVQTMYSSLQEHADTVAKS KLSRNAVNQEQSAEVAKEKGNQAYKDKQWQKAVMFYTEAIKLNGNNATYYSNRAAAYL ELGSFLQAETDCTKAIDLDKKNVKAYLRRGTAREMLGYYKEAIEDFRYALVLEPTNKR AALSAERLRKVFQ" CDS join(<6393746..6393819,6394403..6394527,6395055..6395090, 6396749..6396931,6397040..6397184,6397922..6398090, 6399092..6399226,6399329..6399529,6403261..6403388, 6403470..6403521,6405066..6405218) /locus_tag="TCM_012833" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG007478t1" /codon_start=1 /product="Amidase family protein isoform 3" /protein_id="EOY21337.1" /db_xref="Phytozome:GSVIVT01008433001" /db_xref="TAIR:AT3G17970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2E5" /translation="PVVLSLVEGGATCVGKTVVDELAYSIHGENKHYSTPTNPAAPAR IPGGSSSGAAVAVAANFVDFSLGIIPVASSLDTVGLLAKDPNILHRVGLVLLQLPFSV QRNPRQILLADDCFQLLKIPMERVSQVVINSTEKLFGRQVLKHENLEDYFSSKVPSLK EFYRQKINVDLKISSIRLLANVAQFLQRYEFKCAHEEWISSEKPVLDSAVSTQINETL DLTDKEIEICKSIRNEMRLAVNSLLKDDGILVIPTTAHPPPKLGSKEIFSEDYHNCMF SLLSIASISGCCQVTLPLGYHDNYPVSVSFIARHGGDRFLLDTVQTMYSSLQEHADTV AKSKLSRNAVNQEQSAEVAKEKGNQAYKDKQWQKAVMFYTEAIKLNGNNATYYSNRAA AYLELGSFLQAETDCTKAIDLDKKNVKAYLRRGTAREMLGYYKEAIEGELLLCIFFLA ILYFYLYVSCFLDWLE" gene 6406391..6410485 /locus_tag="TCM_012834" /note="dbxref CacaoGD:Thecc1EG012834" mRNA join(6406391..6406907,6408713..6409031,6409182..6409510, 6410461..6410485) /locus_tag="TCM_012834" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s07490.1" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" mobile_element 6407248..6407380 /note="source:CACAO_M_E69800_F12_scaffold_9 2432 2584" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(6408761..6409031,6409182..6409354) /locus_tag="TCM_012834" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21339.1" /translation="MDSGMFFASVNVRPDAVTGVSAFDVNVNVGVGTSKGKIEEVSSS DLNATTSSIGRGRVKGKGRGRGKGKGPSVPIDVDASDDNSASSKDIKEGKQNSSDFDR EGITINRSLRGILECPDGNRKVVLAENMVFTSVHHFREVMVDYMV" mobile_element complement(6410281..6410926) /note="source:CACAO_M_E52278_F17_scaffold_7 12337 12982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6410921..6411664) /note="source:CACAO_M_E52278_F17_scaffold_7 1 777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6412259..6419513) /note="source:INTACT218_F33_scaffold_9-int 3640 10958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6419514..6421513) /note="source:CACAO_M_E12782_F33_scaffold_3 958 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6421614..6422516 /note="source:CACAO_M_E360_F33_scaffold_1 2033 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6422517..6425796) /note="source:INTACT218_F33_scaffold_9-int 400 3679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6426577..6429589 /note="source:CACAO_M_E12544_F89_scaffold_3 1 3013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6430988..6431058 /note="source:CACAO_M_E42514_F40_scaffold_5 103 175" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6431217..6431308) /note="source:scaffold_1_CACTA_0028 4062 4158" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6431915..6432183 /note="source:INTACT497_F83_scaffold_2-int 5079 5342" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6431950..6435058 /note="source:scaffold_5_CACTA_0611 2009 5093" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6432395..6435162 /note="source:CACAO_M_E86216_F281_scaffold_13 258 3057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6434617..6439234) /note="source:INTACT615_F273_scaffold_2-int 902 5560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6440328..6440900 /note="source:CACAO_M_E69760_F9_scaffold_9 12253 12826" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6442071..6446590) /locus_tag="TCM_012838" /note="dbxref CacaoGD:Thecc1EG012838" mRNA complement(join(6442071..6442456,6445062..6445161, 6445249..6445551,6446392..6446590)) /locus_tag="TCM_012838" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024743t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" mobile_element 6443094..6443127 /note="source:scaffold_1_CACTA_0028 3530 3562" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(6445112..6445161,6445249..6445551, 6446392..6446506)) /locus_tag="TCM_012838" /note="paralog of Thecc1EG024743t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21340.1" /translation="MRKLMLSLAGFRSAFGVMSAYRDVAAVVMGPMGVPGRDSLRGVP GHDNEGFDDDEFDILMWQKLNHFRFLVLATIARDVLVASKYAFSTGGWVLDGYRSSLT PKVVQALICAQDRLHGLAHGDPDLIKDDLDEPNKLDFYLANIALETIVEFESD" mobile_element complement(6445525..6446391) /note="source:CACAO_M_S_E5829_F288_scaffold_2 2093 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6446389..6449352 /note="source:CACAO_M_E69760_F9_scaffold_9 6704 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6449353..6451432) /note="source:CACAO_M_E69909_F228_scaffold_9 1 2113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6453541..6453554 /note="source:CACAO_M_S_E5285_F300_scaffold_1 13571 13582" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6453555..6456892 /note="source:CACAO_M_E12556_F207_scaffold_3 1 3338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6457057..6458546) /note="source:CACAO_M_S_E98366_F278_scaffold_8 1490 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6458547..6460866) /note="source:CACAO_M_E57825_F323_scaffold_9 1113 3432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6460967..6462047) /note="source:CACAO_M_E57825_F323_scaffold_9 1 1081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6462048..6463542) /note="source:CACAO_M_S_E98366_F278_scaffold_8 1 1491" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6468724..6468850 /note="source:CACAO_M_E69283_F22_scaffold_9 876 1002" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6470479..6506627) /locus_tag="TCM_012841" /note="dbxref CacaoGD:Thecc1EG012841" mRNA complement(join(6470479..6470658,6472352..6473358, 6473680..6473758,6476470..6476535,6476757..6476858, 6476976..6477038,6477254..6477339,6477572..6478139, 6506611..6506627)) /locus_tag="TCM_012841" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04450.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1154t2" mRNA complement(join(6472480..6473358,6473559..6473600, 6473680..6473758,6476470..6476535,6476757..6476858, 6476976..6477038,6477254..6477339,6477572..6477965)) /locus_tag="TCM_012841" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04450.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04450.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1154t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1154t2" mRNA complement(join(6472528..6473358,6473680..6473758, 6476470..6476535,6476757..6476858,6476976..6477038, 6477254..6477342,6477572..>6477925)) /locus_tag="TCM_012841" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04450.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04450.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2160t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1154t2" CDS complement(join(6472853..6473358,6473680..6473758, 6476470..6476535,6476757..6476858,6476976..6477038, 6477254..6477339,6477572..6478046)) /locus_tag="TCM_012841" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21341.1" /db_xref="Phytozome:POPTR_0012s04450.1" /db_xref="TAIR:AT1G48580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2E6" /translation="MCEYIIEHYKRAIRCCKINQCPFISKMPPKTPFPAFQKTTMEPD PWEALDLDASDLPSLLRPCKRKPRYSPPPSPIKNLQPTPNSPPPSSPCLIPGPAGAVQ AAMLRKIQNKSNPVGIGEEPLPTQEYIRRAVEDPGADDDDFSRAPWLFALEFIRREGL ADDGGTIGTPLSWIKTEPKMGNRKVAQIVAVIKSCTPNGLGDLMVTLKDPTGTIDASI HRKVLVEGGFGKDISVGTVLILQKVSIFSPSRSVHYLNITLSNVVKAISKDSGPPSQQ NYPASTVIPTDHGVENSKQPYIQQKVSTLSQERTEGIMNSLRQTGYMRGRVHNDKGIE GNEALGSSCCINERNRNQNAFIGKGHSVRQDILSGLKKAAVLAGTNEYEENVVLEKQS SPRNLAASGNHVESNQSSGGANLVGVASNQKTVTDNGDKKQGRLPISSGSLPQWTDEQ LDELFAFD" CDS complement(join(6472853..6473358,6473559..6473600, 6473680..6473758,6476470..6476535,6476757..6476858, 6476976..6477038,6477254..6477339,6477572..6477926)) /locus_tag="TCM_012841" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21342.1" /db_xref="Phytozome:POPTR_0012s04450.1" /db_xref="TAIR:AT1G48580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2E6" /translation="MEPDPWEALDLDASDLPSLLRPCKRKPRYSPPPSPIKNLQPTPN SPPPSSPCLIPGPAGAVQAAMLRKIQNKSNPVGIGEEPLPTQEYIRRAVEDPGADDDD FSRAPWLFALEFIRREGLADDGGTIGTPLSWIKTEPKMGNRKVAQIVAVIKSCTPNGL GDLMVTLKDPTGTIDASIHRKVLVEGGFGKDISVGTVLILQKVSIFSPSRSVHYLNIT LSNVVKAISKDSGPPSQQNYPASTVIPTDHGVVQLIIFFGFFPYSTENSKQPYIQQKV STLSQERTEGIMNSLRQTGYMRGRVHNDKGIEGNEALGSSCCINERNRNQNAFIGKGH SVRQDILSGLKKAAVLAGTNEYEENVVLEKQSSPRNLAASGNHVESNQSSGGANLVGV ASNQKTVTDNGDKKQGRLPISSGSLPQWTDEQLDELFAFD" CDS complement(join(6472853..6473358,6473680..6473758, 6476470..6476535,6476757..6476858,6476976..6477038, 6477254..6477342,6477572..>6477923)) /locus_tag="TCM_012841" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY21343.1" /db_xref="Phytozome:POPTR_0012s04450.1" /db_xref="TAIR:AT1G48580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2E6" /translation="EPDPWEALDLDASDLPSLLRPCKRKPRYSPPPSPIKNLQPTPNS PPPSSPCLIPGPAGAVQAAMLRKIQNKSNPVGIGEEPLPTQEYIRRAVEDPGADDDDF SRAPWLFALEFIRREEGLADDGGTIGTPLSWIKTEPKMGNRKVAQIVAVIKSCTPNGL GDLMVTLKDPTGTIDASIHRKVLVEGGFGKDISVGTVLILQKVSIFSPSRSVHYLNIT LSNVVKAISKDSGPPSQQNYPASTVIPTDHGVENSKQPYIQQKVSTLSQERTEGIMNS LRQTGYMRGRVHNDKGIEGNEALGSSCCINERNRNQNAFIGKGHSVRQDILSGLKKAA VLAGTNEYEENVVLEKQSSPRNLAASGNHVESNQSSGGANLVGVASNQKTVTDNGDKK QGRLPISSGSLPQWTDEQLDELFAFD" mobile_element complement(6480502..6483464) /note="source:CACAO_M_S_E5829_F288_scaffold_2 1 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6484183..6484315 /note="source:CACAO_M_E5627_F4_scaffold_2 18414 18548" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6485066..6485910) /note="source:scaffold_4_CACTA_0500 8078 8923" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6506332..6507887 /note="source:CACAO_M_S_E6875_F7_scaffold_2 3805 5354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6508439..6509222 /note="source:CACAO_M_S_E6875_F7_scaffold_2 5903 6665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6510637..6511284) /note="source:CACAO_M_S_E119191_F3_scaffold_9 821 1468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6511285..6511979 /note="source:CACAO_M_E71577_F15_scaffold_10 1 694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6512080..6512702 /note="source:CACAO_M_E3109_F15_scaffold_1 742 1365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6512692..6512795 /note="source:CACAO_M_E3876_F15_scaffold_1 2998 3101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6512796..6513596) /note="source:CACAO_M_S_E119191_F3_scaffold_9 10044 10872" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6517999..6520986 /note="source:CACAO_M_E12572_F7_scaffold_3 1 2988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6524111..6525289 /note="source:CACAO_M_E56674_F14_scaffold_8 11943 13107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6526258..6526390) /note="source:CACAO_M_E48538_F49_scaffold_6 12213 12352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6532235..6533314) /note="source:CACAO_M_E22186_F143_scaffold_3 14597 15676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6533383..6533462 /note="source:INTACT95_F143_scaffold_9-int 1013 1090" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6533463..6536065 /note="source:CACAO_M_E12578_F53_scaffold_3 1 2603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6536066..6536107) /note="source:CACAO_M_E22484_F328_scaffold_3 14940 14969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6536100..6537963 /note="source:CACAO_M_E42809_F5_scaffold_5 15236 17059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6539251..6541235) /note="source:CACAO_M_E58324_F9_scaffold_9 19602 21586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6541336..6541584) /note="source:CACAO_M_S_E101707_F15_scaffold_9 840 1088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6541688..6542500) /note="source:CACAO_M_S_E101707_F15_scaffold_9 1 812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6544066..6544083 /note="source:INTACT405F_F91_scaffold_4-int 4278 5397" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6544084..6545191 /note="source:CACAO_M_S_E100312_F82_scaffold_9 1 1106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6545292..6554377 /note="source:CACAO_M_E49759_F82_scaffold_7 1100 9959" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6552535..6561886 /locus_tag="TCM_012848" /note="dbxref CacaoGD:Thecc1EG012848" mRNA join(6552535..6552902,6556675..6557192,6560904..6561886) /locus_tag="TCM_012848" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002291t1" /inference="similar to AA sequence:Phytozome:Glyma13g21780.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.15 coverage" mobile_element 6557107..6557232 /note="source:CACAO_PIF_E465_scaffold_115 2274 2402" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 6558236..6560809 /note="source:CACAO_PIF_E465_scaffold_115 3158 5716" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS 6561309..6561752 /locus_tag="TCM_012848" /note="paralog of Thecc1EG002291t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative" /protein_id="EOY21344.1" /db_xref="Phytozome:Glyma13g21780.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AGH3" /translation="MMALVVHFELEFHQMDMKTTFLNGNLDKEDYMVQFEGFQESSSE NLVCRLKKSLYGLKQAYRQWYLKFDEIVTSMGSEENKVDKCIYLKISDSKFIFLMLYV DDILLSSNDVGLLHETKKLLSKNFNMKDLGDASFVLGIKICRDKS" gene 6565628..6569280 /locus_tag="TCM_012850" /note="dbxref CacaoGD:Thecc1EG012850" mRNA join(6565628..6565689,6565786..6565983,6566942..6567037, 6568677..6569280) /locus_tag="TCM_012850" /product="Calcium-dependent lipid-binding (CaLB domain) family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019180t1" /inference="similar to AA sequence:ricco:29651.m000295" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8302t1" CDS join(6565825..6565983,6566942..6567037,6568677..6568967) /locus_tag="TCM_012850" /note="dbxref ricco:29651.m000295; paralog of Thecc1EG019180t1" /codon_start=1 /product="Calcium-dependent lipid-binding (CaLB domain) family protein" /protein_id="EOY21345.1" /db_xref="TAIR:AT3G17980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LP65" /translation="MTGSPITPQNERSTSLMDNLLGLLRIRIKRGVNLAVRDVRSSDP YVVVKMGRQKLKTRVIKKDVNPEWNEDLTLSITDPSLPIKLTVYDHDTFSKDDKMGDA EFDIRTYIEALKMNLGEIPSGTIISKVQPGRNNCLAEESTIDWKDGKVVQDICLRLRN VECGEVEIQLQWIDLPGSKGL" mobile_element 6572856..6574114 /note="source:CACAO_M_E49195_F17_scaffold_6 1 1249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6574120..6574600 /note="source:scaffold_10_CACTA_0130 123 637" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6574861..6575274 /note="source:scaffold_10_CACTA_0130 917 1357" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6575416..6577604 /note="source:scaffold_10_CACTA_0130 1511 3849" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6577599..6577875) /note="source:CACAO_on_SS_E90_scaffold_6 6961 7224" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6579790..6581455) /note="source:scaffold_10_CACTA_0130 6249 7873" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6585118..6596944 /note="source:INTACT47_F12_scaffold_3-int 1 11827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6596902..6596950) /note="source:INTACT12_F107_scaffold_9-int 7486 7533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6596957..6597024) /note="source:CACAO_M_S_E5210_F12_scaffold_1 8197 8264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6604206..6604429 /note="source:scaffold_5_CACTA_0591 9534 9756" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6604499..6604791 /note="source:scaffold_5_CACTA_0591 9785 10080" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6604766..6605485 /note="source:scaffold_5_CACTA_0591 15450 16170" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6605484..6605834 /note="source:scaffold_5_CACTA_0591 16276 16624" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6610692..6610782 /note="source:scaffold_8_CACTA_0860 498 589" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6611636..6611708 /note="source:INTACT336_F12_scaffold_2-int 14611 14682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6611893..6611975) /note="source:CACAO_M_E9395_F12_scaffold_2 108 196" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6612428..6613061 /note="source:CACAO_M_E1841_F5_scaffold_1 9632 10262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6613062..6615911 /note="source:CACAO_M_S_E17439_F15_scaffold_3 1 2850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6615912..6616282) /note="source:INTACT506_F233_scaffold_3-int 1777 2168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6616283..6619442) /note="source:INTACT1327F_F381_scaffold_8-int 6066 9257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6619438..6619483 /note="source:CACAO_M_S_E50960_F369_scaffold_4 14013 14057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6619442..6626705) /note="source:CACAO_M_S_E85473_F233_scaffold_7 1 8874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6629460..6629587) /note="source:scaffold_8_CACTA_0860 589 714" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6630305..6632901 /note="source:CACAO_M_E12599_F369_scaffold_3 1 2597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6637615..6637782 /note="source:scaffold_8_CACTA_0860 422 589" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6638727..6638817 /note="source:INTACT189_F49_scaffold_5-int 1371 1452" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6638850..6639026 /note="source:scaffold_2_CACTA_0259 5379 5569" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6638888..6641535) /note="source:CACAO_M_S_E84376_F22_scaffold_6 3567 6162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6647008..6649965 /note="source:CACAO_M_E12604_F246_scaffold_3 1 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6650771..6650822 /note="source:scaffold_8_CACTA_0860 257 308" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6652104..6652280) /note="source:CACAO_M_S_E64440_F7_scaffold_5 2841 3022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6652285..6654843 /note="source:CACAO_M_S_E98366_F278_scaffold_8 399 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6656281..6656356 /note="source:scaffold_9_CACTA_0929 9973 10048" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6660779..6661384) /note="source:CACAO_M_E70891_F369_scaffold_10 10892 11496" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6663291..6665775 /note="source:CACAO_M_E14113_F106_scaffold_3 8036 10512" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6667744..6668337 /note="source:INTACT642F_F365_scaffold_5-int 6098 6621" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6668304..6668512) /note="source:INTACT454F_F360_scaffold_4-int 1 202" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6668328..6671416 /note="source:CACAO_M_E12610_F15_scaffold_3 1 3089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6671417..6674154) /note="source:CACAO_M_S_E51090_F42_scaffold_4 1 2724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6676766..6677000 /note="source:CACAO_M_S_E34046_F60_scaffold_4 2628 2862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6677325..6677522) /note="source:CACAO_M_E5899_F5_scaffold_2 21827 22025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6677972..6678172 /note="source:CACAO_M_E58715_F13_scaffold_9 4573 4770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6678518..6678677) /note="source:scaffold_9_CACTA_0937 7171 7329" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6678717..6678760 /note="source:CACAO_M_E70891_F369_scaffold_10 16075 16118" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6679881..6680828 /locus_tag="TCM_012853" /note="dbxref CacaoGD:Thecc1EG012853" mRNA 6679881..6680828 /locus_tag="TCM_012853" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" CDS 6680155..6680430 /locus_tag="TCM_012853" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21346.1" /translation="MDGQQNSQDPRPFLFPFFPAADVAAAPVATSTIATATTTIAATT SGPQWLCNPSFTSDLFLINDVVSSLPCALNVEEKDEDDGEEGKQQQQ" gene 6681260..6685448 /locus_tag="TCM_012854" /note="dbxref CacaoGD:Thecc1EG012854" mRNA join(6681260..6682991,6683217..6683463,6683630..6683715, 6684136..6684293,6684898..6684974,6685082..6685448) /locus_tag="TCM_012854" /product="Auxin efflux facilitator isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023972t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s04470.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2219t1" mRNA join(6681331..6682769,6682863..6682991,6683217..6683463, 6683630..>6683718) /locus_tag="TCM_012854" /product="Auxin efflux facilitator isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023972t3" /inference="similar to AA sequence:Phytozome:POPTR_0012s04470.2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc617t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2219t1" CDS join(6681806..6682991,6683217..6683463,6683630..6683715, 6684136..6684293,6684898..6684974,6685082..6685148) /locus_tag="TCM_012854" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG023972t2" /codon_start=1 /product="Auxin efflux facilitator isoform 1" /protein_id="EOY21347.1" /db_xref="Phytozome:POPTR_0012s04470.1" /db_xref="TAIR:AT1G73590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7URM3" /translation="MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINR FVALFAVPLLSFHFISSNDPYSMNFRFIAADTLQKIIVLVVLAVWTKVSKRGCLEWTI TLFSLSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGAKML ISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETEAEIKEDGKLHVTVRKSNASRSDIFS RRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAGGRNSNFGAAD VYGLSASRGPTPRPSNYEEDGAATGKPRFHYHAPGGAAHYPAPNPGMFSPTGSKGVGA NANANAKKPNGQAQLKSEDGGRDLHMFVWSSSASPVSDVFAGHEYGASDQKEVRLAVS PGKVEGHRENHEAYMERDDFSFGNRGLDREMNNHEGDKVGDGKPKTMPPTSVMTRLIL IMVWRKLIRNPNTYSSLIGLTWSLVSFRWNVQMPAIIAKSISILSDAGLGMAMFSLGL FMALQPRIIACGNSVAAFAMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGI VPFVFAKEYNVHPDILSTAVIFGMLIALPITLVYYILLGV" CDS join(6681806..6682769,6682863..6682991,6683217..6683463, 6683630..>6683717) /locus_tag="TCM_012854" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG023972t3" /codon_start=1 /product="Auxin efflux facilitator isoform 2" /protein_id="EOY21348.1" /db_xref="Phytozome:POPTR_0012s04470.2" /db_xref="TAIR:AT1G73590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7URM3" /translation="MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINR FVALFAVPLLSFHFISSNDPYSMNFRFIAADTLQKIIVLVVLAVWTKVSKRGCLEWTI TLFSLSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGAKML ISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETEAEIKEDGKLHVTVRKSNASRSDIFS RRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAGGRNSNFGAAD VYGLSASRGPTPRPSNYEEDGAATGKPRFHYHAPGGAAHYPAPNPDGGRDLHMFVWSS SASPVSDVFAGHEYGASDQKEVRLAVSPGKVEGHRENHEAYMERDDFSFGNRGLDREM NNHEGDKVGDGKPKTMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWNV QMPAIIAKSISILSDAGLGMAMFSLG" mobile_element complement(6691474..6691649) /note="source:CACAO_M_S_E34046_F60_scaffold_4 7743 7917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6694922..6695004) /note="source:CACAO_M_E5899_F5_scaffold_2 1120 1201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6694932..6695027 /note="source:INTACT167_F5_scaffold_2-int 11 104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6695884..6698833) /note="source:CACAO_M_S_E122136_F76_scaffold_10 1327 4278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6702820..6703851 /note="source:scaffold_8_CACTA_0859 16514 17532" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6705475..6706201 /note="source:CACAO_M_E14113_F106_scaffold_3 4876 5606" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6708993..6709850) /note="source:CACAO_M_E5899_F5_scaffold_2 21829 22692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6710317..6710628) /note="source:CACAO_M_E14113_F106_scaffold_3 4252 4568" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6711282..6711919 /note="source:scaffold_8_CACTA_0859 16884 17518" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6712158..6712419 /note="source:scaffold_8_CACTA_0859 17671 17936" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6713332..6716318 /note="source:CACAO_M_E12618_F277_scaffold_3 1 2987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6719101..6719309) /note="source:CACAO_M_E85180_F12_scaffold_10 993 1203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6720322..6720512 /note="source:CACAO_M_E69236_F12_scaffold_9 808 994" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6723585..6726152) /locus_tag="TCM_012857" /note="dbxref CacaoGD:Thecc1EG012857" mRNA complement(join(6723585..6724045,6724397..6724491, 6724874..6725057,6725130..6725188,6725320..6725385, 6725517..6725629,6725699..6725827,6725925..6726152)) /locus_tag="TCM_012857" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(6723982..6724045,6724397..6724491, 6724874..6725057,6725130..6725188,6725320..6725385, 6725517..6725629,6725699..6725827,6725925..6726063)) /locus_tag="TCM_012857" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21349.1" /translation="MKARSQFPITENEQEDEGVYQEDEVYFNSPFDHTSIILDNNTFL VRNVTEVKSIWQKIYKDCLKDLLVDEHDKVKRETGSLDIDFILTKEWQAHSCKAKQNS LTKKDGSVVKHTSNSLPFALHQKKKEEEKNDKLHSPSSSNAFTSGKKESYASTIMEKY GTEPLSQLNTQVLASRLLAATVTFESACGPNDAPHPMPTLAPKPEGYRQLLNDVKTLM MGFTDIKGFFMDSSYAISRITDRMGHCQRIWLAAFKLVPPIIHRIGNGSGWFFEDFVR IEKRKV" mobile_element 6728347..6728487 /note="source:CACAO_M_E12643_F369_scaffold_3 380 516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6728791..6729208 /note="source:CACAO_M_E5899_F5_scaffold_2 20292 20695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6729973..6730734 /note="source:CACAO_M_E5899_F5_scaffold_2 21827 22603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6731487..6732302) /note="source:INTACT83_F5_scaffold_9-int 11474 12280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6732374..6732950 /note="source:CACAO_M_E23991_F4_scaffold_4 13955 14386" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6733002..6733043 /note="source:CACAO_M_E23991_F4_scaffold_4 14448 14489" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6733032..6733139) /note="source:CACAO_M_S_E100312_F82_scaffold_9 6476 6580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6733044..6735674 /note="source:CACAO_M_E50311_F328_scaffold_7 3291 5835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6735975..6736987 /note="source:CACAO_M_E50311_F328_scaffold_7 2963 3701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6737060..6741261) /note="source:CACAO_M_S_E119127_F246_scaffold_9 1471 5645" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6739779..6742399 /note="source:CACAO_M_E50311_F328_scaffold_7 3291 5835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6742715..6743330 /note="source:CACAO_M_E50311_F328_scaffold_7 5822 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6744078..6744187 /note="source:CACAO_M_E23991_F4_scaffold_4 15226 15334" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6744557..6745196) /note="source:INTACT724_F4_scaffold_8-int 8325 8984" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6750998..6752824 /note="source:CACAO_M_E12623_F4_scaffold_3 1 1827" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6756969..6757634) /note="source:CACAO_M_S_E89272_F5_scaffold_8 14259 14917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6757668..6758195) /note="source:CACAO_M_E85923_F17_scaffold_12 127 646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6758200..6759405 /note="source:CACAO_M_S_E17482_F14_scaffold_3 1 1206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6759414..6759626) /note="source:CACAO_M_E85923_F17_scaffold_12 12928 13138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6763836..6766438 /note="source:CACAO_M_E48403_F344_scaffold_6 1 2599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6767706..6768524 /note="source:CACAO_M_S_E32183_F51_scaffold_3 3 824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6768525..6771210 /note="source:CACAO_M_E12628_F369_scaffold_3 1 2678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6771211..6773458 /note="source:CACAO_M_S_E20043_F51_scaffold_3 851 3114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6777180..6778772 /note="source:CACAO_M_E65050_F7_scaffold_9 7101 8734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6778765..6779627 /note="source:CACAO_M_S_E144798_F230_scaffold_10 2009 2873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6781586..6784750) /note="source:INTACT411_F19_scaffold_10-int 22 3193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6796120..6797490 /note="source:INTACT518_F239_scaffold_2-int 6880 8249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6796122..6796794) /note="source:CACAO_M_S_E84376_F22_scaffold_6 15669 16981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6796795..6798811) /note="source:scaffold_4_CACTA_0489 5922 7906" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6798812..6804260) /note="source:CACAO_M_S_E84376_F22_scaffold_6 5026 15668" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6800819..6805058 /note="source:scaffold_2_CACTA_0259 2949 7153" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6803948..6805962) /note="source:scaffold_4_CACTA_0489 5922 7910" /mobile_element_type="transposon:TIR/CACTA" gene 6806504..6821348 /locus_tag="TCM_012861" /note="dbxref CacaoGD:Thecc1EG012861" mRNA join(6806504..6806677,6815724..6816074,6816184..6816274, 6821316..6821348) /locus_tag="TCM_012861" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element 6815121..6815197 /note="source:INTACT135F_F90_scaffold_2-int 17006 17080" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(6815945..6816074,6816184..6816254) /locus_tag="TCM_012861" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21350.1" /translation="MKRGRYGLDGTIPGTSLDGTTWCHPFFLVSNISILPIAIEKAWS LPYGSYLNGYYASGVTTAPPNK" mobile_element 6816323..6816526 /note="source:INTACT1432F_F101_scaffold_9-int 13255 13481" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(6817253..6817522) /note="source:INTACT43_F19_scaffold_6-int 1 263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6820897..6821779 /note="source:CACAO_M_E57954_F7_scaffold_9 1 884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6821781..6822811 /note="source:CACAO_M_E33318_F259_scaffold_4 2 1056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6821997..6822903) /note="source:CACAO_M_S_E84336_F318_scaffold_6 1869 2786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6822904..6825706 /note="source:CACAO_M_E12638_F333_scaffold_3 1 2803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6825707..6827357 /note="source:CACAO_M_S_E15687_F259_scaffold_2 921 2572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6827358..6829473) /note="source:CACAO_M_S_E86008_F7_scaffold_7 1 2112" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6827694..6838886 /locus_tag="TCM_012863" /note="dbxref CacaoGD:Thecc1EG012863" mRNA join(6827694..6827751,6832181..6832742,6833303..6833500, 6838849..6838886) /locus_tag="TCM_012863" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" mobile_element 6830446..6830646 /note="source:INTACT1432F_F101_scaffold_9-int 13253 13475" /mobile_element_type="retrotransposon:LTR/Unclassified" CDS join(6832656..6832742,6833303..6833494) /locus_tag="TCM_012863" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21351.1" /translation="MKERLEEFEANMDELGSKDDELREELHEMAKLELQMRSVQNITK VMTVVESLVDLHKFENKLFFLKPKKKGNDKEEKDNGSEEYAGEKSPRH" mobile_element 6835573..6836063 /note="source:CACAO_M_E11804_F2_scaffold_2 5329 5833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6837822..6837876) /note="source:CACAO_M_E3884_F22_scaffold_1 17697 17753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6837952..6838740) /note="source:CACAO_M_E3884_F22_scaffold_1 16630 17399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6838736..6838780) /note="source:CACAO_M_E3884_F22_scaffold_1 16356 16400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6840776..6842129) /note="source:CACAO_M_S_E64832_F14_scaffold_5 10037 11391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6843240..6845457 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18938 20175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6845156..6845587) /note="source:INTACT563_F255_scaffold_10-int 17229 17671" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6845584..6845668 /note="source:CACAO_M_E58601_F7_scaffold_9 8608 8693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6847093..6849731 /note="source:CACAO_M_E12643_F369_scaffold_3 1 2639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6850700..6852078) /note="source:CACAO_M_E3884_F22_scaffold_1 13532 14875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6852299..6852438) /note="source:CACAO_M_E3884_F22_scaffold_1 13033 13171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6853924..6854361 /note="source:CACAO_M_E11804_F2_scaffold_2 491 928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6854360..6854443 /note="source:INTACT503_F2_scaffold_1-int 874 948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6854456..6854896) /note="source:CACAO_M_E69460_F12_scaffold_9 437 877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6854897..6857334 /note="source:CACAO_M_E11054_F12_scaffold_2 7421 9797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6857481..6858914) /note="source:CACAO_M_E9978_F12_scaffold_2 19087 20509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6858909..6859275 /note="source:CACAO_M_S_E64023_F13_scaffold_5 16490 16847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6860557..6860944) /note="source:INTACT215F_F14_scaffold_3-int 11162 11539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6860980..6861122 /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6861116..6862604) /note="source:CACAO_M_S_E83372_F14_scaffold_6 6014 7493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6862582..6870698 /note="source:CACAO_M_E86184_F12_scaffold_13 2049 10160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6870699..6871633) /note="source:CACAO_M_E12463_F12_scaffold_3 3544 4484" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6871809..6874975) /note="source:INTACT524_F2_scaffold_3-int 4052 7226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6874976..6877051 /note="source:scaffold_6_CACTA_0709 4050 6134" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6877052..6878469 /note="source:CACAO_M_S_E17777_F2_scaffold_3 10577 11913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6882249..6885418) /note="source:INTACT1327F_F381_scaffold_8-int 6069 9257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6887069..6890052 /note="source:CACAO_M_E12650_F52_scaffold_3 1 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6889909..6890067) /note="source:INTACT296_F13_scaffold_9-int 7956 8114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6896979..6897112) /note="source:CACAO_M_E59539_F98_scaffold_9 2317 2453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6901972..6912424 /note="source:INTACT191F_F350_scaffold_3-int 1 20247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6912371..6912433) /note="source:INTACT406_F208_scaffold_3-int 6361 6425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6913051..6924098) /note="source:CACAO_M_E69228_F89_scaffold_9 1 11083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6925656..6926050) /note="source:INTACT591_F264_scaffold_1-int 1121 1516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6926047..6927519) /note="source:CACAO_M_E22484_F328_scaffold_3 8455 9911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6927517..6928416) /note="source:CACAO_M_E44599_F33_scaffold_6 4689 5588" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6928411..6928959 /note="source:CACAO_M_E12297_F14_scaffold_3 17967 18519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6928956..6935372 /note="source:CACAO_M_S_E100409_F33_scaffold_9 4474 10859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6935501..6942275) /note="source:CACAO_M_S_E122077_F328_scaffold_10 4753 10198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6942257..6942419) /note="source:CACAO_M_S_E53332_F15_scaffold_5 2693 2853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6942276..6943010 /note="source:CACAO_M_S_E4911_F76_scaffold_1 2972 3707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6945000..6949976) /note="source:CACAO_M_S_E122077_F328_scaffold_10 3 4757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6951415..6952194 /note="source:scaffold_1_CACTA_0028 4948 5724" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6952791..6953107) /note="source:CACAO_M_E22265_F82_scaffold_3 5470 5786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6954002..6954532) /note="source:CACAO_M_E42514_F40_scaffold_5 10290 10820" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6954122..6954598 /note="source:CACAO_M_E52253_F12_scaffold_7 11369 11828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6954789..6954858) /note="source:scaffold_1_CACTA_0028 4540 4608" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6955151..6958107 /note="source:CACAO_M_E12665_F312_scaffold_3 1 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6962042..6962365 /note="source:CACAO_M_E1841_F5_scaffold_1 8533 8853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6963645..6963682 /note="source:CACAO_M_E1841_F5_scaffold_1 15162 15199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6964761..6964862 /note="source:CACAO_M_E1841_F5_scaffold_1 15197 15298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6964863..6968162 /note="source:CACAO_M_E44698_F85_scaffold_6 1 3331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6968163..6968385 /note="source:CACAO_M_E1841_F5_scaffold_1 15294 15516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6971626..6972101 /note="source:CACAO_M_E1841_F5_scaffold_1 26019 26504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6974661..6977635 /note="source:CACAO_M_E12672_F15_scaffold_3 1 2975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6978099..6978227) /note="source:INTACT231_F12_scaffold_4-int 5386 5513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6978117..6980110) /note="source:CACAO_M_E42514_F40_scaffold_5 11336 13311" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6979967..6980146 /note="source:CACAO_M_S_E50960_F369_scaffold_4 7312 7491" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6980680..6981228) /note="source:CACAO_M_E42514_F40_scaffold_5 10291 10839" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6983265..6984453) /note="source:CACAO_M_E42514_F40_scaffold_5 12125 13311" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6984690..6986072) /note="source:CACAO_M_E22265_F82_scaffold_3 4341 5722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6986173..6986453) /note="source:CACAO_M_E42514_F40_scaffold_5 10291 10571" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6986571..6987111) /note="source:INTACT167_F5_scaffold_2-int 5151 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6987138..6990689) /note="source:INTACT226_F51_scaffold_1-int 7702 11223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6991556..6996033 /note="source:CACAO_M_S_E65068_F306_scaffold_5 8296 12764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6996030..6996252 /note="source:CACAO_M_S_E19454_F51_scaffold_3 2897 3120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6996514..6996597) /note="source:CACAO_M_S_E5285_F300_scaffold_1 19273 19358" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6997022..6999972 /note="source:CACAO_M_E12676_F15_scaffold_3 1 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7000069..7000484) /note="source:INTACT453_F4_scaffold_9-int 17735 18122" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7000481..7001983 /note="source:CACAO_M_E9677_F7_scaffold_2 9865 11348" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7003678..7004007) /note="source:CACAO_M_E85341_F207_scaffold_11 1 330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7004008..7005030) /note="source:INTACT453_F4_scaffold_9-int 16719 17743" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7004971..7005020) /note="source:scaffold_8_CACTA_0859 11655 12153" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7005021..7005441 /note="source:CACAO_M_E35024_F15_scaffold_5 1 420" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7007117..7007530 /note="source:scaffold_3_CACTA_0382 4344 4758" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7007793..7009099 /note="source:INTACT901F_F95_scaffold_6-int 10173 11479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7009085..7015391) /note="source:INTACT8_F106_scaffold_3-int 1 6325" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7015392..7015800) /note="source:CACAO_M_E34871_F106_scaffold_5 1036 1467" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(7015782..7121325) /locus_tag="TCM_012876" /note="dbxref CacaoGD:Thecc1EG012876" mRNA complement(join(7015782..7015824,7065141..7065582, 7065928..7066008,7066695..7066805,7066888..7067076, 7067249..7067314,7067943..7068017,7069020..7069130, 7069211..7069299,7069647..7069791,7070607..7070704, 7070959..7071100,7071261..7071308,7071397..7071567, 7071672..7071740,7073802..7073921,7074025..7074097, 7074261..7074379,7074491..7074610,7074762..7074849, 7080355..7080566,7083078..7083124,7083972..7084050, 7084153..7084234,7085824..7085961,7086061..7086109, 7086199..7086253,7086355..7086431,7087270..7087350, 7087416..7087496,7089600..7089675,7090383..7090577, 7090741..7090784,7090899..7090977,7092209..7092287, 7093117..7093254,7093472..7093520,7093632..7093686, 7094496..7094572,7095222..7095302,7095385..7095465, 7096604..7096679,7097656..7097854,7121218..7121325)) /locus_tag="TCM_012876" /product="Ketose-bisphosphate aldolase class-II family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008461001" /inference="similar to AA sequence:Phytozome:GSVIVT01008461001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2410t7" mobile_element 7015797..7015976 /note="source:CACAO_M_E59536_F106_scaffold_9 1025 1222" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(7017585..7031179) /locus_tag="TCM_012877" /note="dbxref CacaoGD:Thecc1EG012877" mRNA complement(join(7017585..7017896,7017995..7018743, 7030025..7030108,7030757..7031179)) /locus_tag="TCM_012877" /product="RNA-directed DNA polymerase (Reverse transcriptase)" /inference="alignment:exonerate- protein:2:frave:gene33375.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040073t1" /inference="similar to AA sequence:Phytozome:Glyma01g20680.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc8Loc1813t1_G2" mobile_element complement(7017822..7018909) /note="source:CACAO_M_E12297_F14_scaffold_3 11362 12449" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(7017851..7017896,7017995..7018668)) /locus_tag="TCM_012877" /note="paralog of Thecc1EG040073t1" /codon_start=1 /product="RNA-directed DNA polymerase (Reverse transcriptase)" /protein_id="EOY21357.1" /db_xref="Phytozome:Glyma01g20680.1" /db_xref="TAIR:ATMG00860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HW78" /translation="MVFSKIDLRSGYYQLRIKEQDVPKTAFRTRYGHYEFLVMPFGLT NAPAVFMDLMNRVFHPYLDKFVIVFIDDILVYSKNDDEHAAHLLIVLQTLRERQLYAK FSKCEFWLKEVVFLGHVVSGAGIYVDPKKIEAILQWEQPRTVTEIRSFLGLAGYYRRF VQGFSLIAAPLTRLTRKGVKYEWDDVCENRFQELKNRLTSAPVLTLPVSGKEFVVYSD ASKLGLGSSIRIEDLETLFIW" mobile_element complement(7029823..7031500) /note="source:CACAO_M_E12297_F14_scaffold_3 6365 8044" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7031601..7031988) /note="source:scaffold_4_CACTA_0503 4117 4505" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7032366..7033931) /note="source:scaffold_4_CACTA_0503 2172 3738" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7037528..7038479) /note="source:scaffold_4_CACTA_0503 706 1659" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7038581..7039501) /note="source:CACAO_M_E69760_F9_scaffold_9 8294 9199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7039502..7040390) /note="source:CACAO_M_E33634_F323_scaffold_4 2307 3195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7040915..7041307) /note="source:CACAO_M_E58722_F323_scaffold_9 1637 2029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7045078..7047260) /note="source:CACAO_M_E69737_F323_scaffold_9 2878 5063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7047517..7050231) /note="source:CACAO_M_E52472_F323_scaffold_7 1 2714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7050232..7051803) /note="source:scaffold_4_CACTA_0503 3230 4830" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7051804..7052891) /note="source:CACAO_M_S_E86202_F72_scaffold_7 1852 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7052892..7055842 /note="source:CACAO_M_E12691_F134_scaffold_3 1 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7055801..7055856 /note="source:CACAO_M_E14081_F316_scaffold_3 13581 13633" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7055843..7057697) /note="source:CACAO_M_S_E86202_F72_scaffold_7 1 1856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7059816..7061237) /note="source:CACAO_M_E33804_F134_scaffold_4 5372 6789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7061806..7062926) /note="source:CACAO_M_E44425_F33_scaffold_6 7770 8891" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7063773..7064607) /note="source:INTACT567_F258_scaffold_9-int 1 807" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(7065007..7065582,7065928..7066111, 7066880..7067076,7067249..7067314,7067943..7068017, 7069020..7069130,7069211..7069299,7069647..7069791, 7070607..7070704,7070959..7071100,7071261..7071308, 7071397..7071567,7071672..7071701)) /locus_tag="TCM_012876" /product="Ketose-bisphosphate aldolase class-II family protein isoform 5" /inference="similar to AA sequence:Phytozome:POPTR_0015s04720.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc733t11" mRNA complement(join(7065009..7065582,7065928..7066008, 7066695..7066805,7066888..7067076,7067249..7067314, 7067943..7068017,7069020..7069130,7069211..7069299, 7069647..7069791,7070607..7070704,7070959..7071100, 7071261..7071311,7071397..7071567,7071672..7071740, 7073802..7073921,7074025..7074097,7074261..7074379, 7074491..7074610,7074762..7074849,7080355..7080566, 7083078..7083124,7083972..7084050,7084153..7084234, 7085824..7085961,7086061..7086109,7086199..7086253, 7086355..7086431,7087270..7087350,7087416..7087496, 7089600..7089675,7090383..7090577,7090741..7090784, 7090899..7090977,7092209..7092287,7093117..7093254, 7093472..7093520,7093632..7093686,7094496..7094572, 7095222..7095302,7095385..7095465,7096604..7096679, 7097656..7097783)) /locus_tag="TCM_012876" /product="Ketose-bisphosphate aldolase class-II family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008461001" /inference="similar to AA sequence:Phytozome:GSVIVT01008461001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2410t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2410t7; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc572t16" CDS complement(join(7065403..7065582,7065928..7066008, 7066695..7066805,7066888..7067076,7067249..7067314, 7067943..7068017,7069020..7069130,7069211..7069299, 7069647..7069791,7070607..7070704,7070959..7071100, 7071261..7071308,7071397..7071567,7071672..7071740, 7073802..7073921,7074025..7074097,7074261..7074379, 7074491..7074610,7074762..7074849,7080355..7080566, 7083078..7083124,7083972..7084050,7084153..7084234, 7085824..7085961,7086061..7086109,7086199..7086253, 7086355..7086431,7087270..7087350,7087416..7087496, 7089600..7089675,7090383..7090577,7090741..7090784, 7090899..7090977,7092209..7092287,7093117..7093254, 7093472..7093520,7093632..7093686,7094496..7094572, 7095222..7095302,7095385..7095465,7096604..7096679, 7097656..7097751)) /locus_tag="TCM_012876" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ketose-bisphosphate aldolase class-II family protein isoform 1" /protein_id="EOY21352.1" /db_xref="Phytozome:GSVIVT01008461001" /db_xref="TAIR:AT1G18270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IAP5" /translation="MAGVVGFVGLDRLSLDMAALLLRAGYRVQAFEVQKLLMGEFLKL GGTECISLMETGKGVAALIVLISHADQINDVIFGHDDALKGLQKDKVIILHSTILPSY IQNLEKKLREDGLATSVVDAYVYKATSDNLNGKVVVMSSGRSDAISKARPFLSAMCEK LYIFEGETGAGSKIKLVTELLEGIHLMAAVEAISLGVHAGIHPWIIYDIISNAAGNSW VFKNYIPQLLRGSVKCHFLNPFILNLGIVLDMAKSLTFPLPLLATAHQQLVLGSSHGN GDDNTPLVQIWDQVYGVNTADAANTELYSPEQLASQIIAKSKTVNRVGFIGLGAMGFG MATHLVKSNFCVLGYDVYRPTLIRFESAGGLIGTSPADVSKDVDVLVVMVTNEAQAES VLYGDLGAVSALPSGASIILSSTVSPAFVSQLERRLQNEGKDLKLVDAPVSGGVKRAS MGELTIMAAGSDDALKSSGLVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIAASA EAMAFGARLGLNTRVLFDIITNSGATSWMFENRVPHMLDNDYTPYSALDIFVKDLGIV ARECSTRKVPLHISTMAHQLFLAGSAAGWGRQDDAGVVKVYETLTGVKVEGKLPALKK EVVLQSIPPEWPVDPINDIHRLNQKNSKTLVVLDDDPTGTQTVHDVEVLTEWSVESLV EQFRKKPICFFILTNSRSLSSEKATALIKDICSSLLTAAKSVGNIDYTVVLRGDSTLR GHFPEEPDAAVSVIGQVDAWILCPFFLQGGRYTIEDIHYVADSDWLVPAGDTEFAKDA AFGYKSSNLREWVEEKTAGRIPASSVASISIQLLRQGGPDAVCEHLCSLEKGSTCIVN AVSERDMAVFAAGMIQAELKGKSFLCRSAASFVSARIGIIPKARILPKDLGKKKERSG GLIVVGSYVPKTTKQVEELQSQYGHMLKSIEVSVHKVAMKSLEEREEEINRTAEMASV FLAAHKDTLIMSSRELITGKTASESLEINFKVSSALVEVVRRITTRPCYILAKGGITS SDLATKALEAKRAKVVGQALAGIPLWELGSESRHPGVPYIVFPGNVGDSKALAEVVRS WAHPLRLSSTKEILLNAESGGYAVGAFNVYNMEGVEAVVAAAEQERSPAILQVHPGAF KQGGITLVACCISAAEQASVPITVHFDHGTSKKELLDSLELGFDSIMADGSHLPFKDN ISYTKHISNLAHSKDMLVEAELGRLSGTEDDLTVEDYEARLTDVNQAQEFIDETGIDA LAVCIGNVHGKYPASGPNLKLDLLEDLYALSSKKGVFLVLHGASGLSKELVKGCIERG VRKFNVNTEVRKAYMDSLRNPKGDLVHVMASAKEAMKAVIAEKMHLFGSAGKA" CDS complement(join(7065403..7065582,7065928..7066008, 7066695..7066805,7066888..7067076,7067249..7067314, 7067943..7068017,7069020..7069130,7069211..7069299, 7069647..7069791,7070607..7070704,7070959..7071100, 7071261..7071311,7071397..7071567,7071672..7071740, 7073802..7073921,7074025..7074097,7074261..7074379, 7074491..7074610,7074762..7074849,7080355..7080566, 7083078..7083124,7083972..7084050,7084153..7084234, 7085824..7085961,7086061..7086109,7086199..7086253, 7086355..7086431,7087270..7087350,7087416..7087496, 7089600..7089675,7090383..7090577,7090741..7090784, 7090899..7090977,7092209..7092287,7093117..7093254, 7093472..7093520,7093632..7093686,7094496..7094572, 7095222..7095302,7095385..7095465,7096604..7096679, 7097656..7097751)) /locus_tag="TCM_012876" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ketose-bisphosphate aldolase class-II family protein isoform 2" /protein_id="EOY21353.1" /db_xref="Phytozome:GSVIVT01008461001" /db_xref="TAIR:AT1G18270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IAP5" /translation="MAGVVGFVGLDRLSLDMAALLLRAGYRVQAFEVQKLLMGEFLKL GGTECISLMETGKGVAALIVLISHADQINDVIFGHDDALKGLQKDKVIILHSTILPSY IQNLEKKLREDGLATSVVDAYVYKATSDNLNGKVVVMSSGRSDAISKARPFLSAMCEK LYIFEGETGAGSKIKLVTELLEGIHLMAAVEAISLGVHAGIHPWIIYDIISNAAGNSW VFKNYIPQLLRGSVKCHFLNPFILNLGIVLDMAKSLTFPLPLLATAHQQLVLGSSHGN GDDNTPLVQIWDQVYGVNTADAANTELYSPEQLASQIIAKSKTVNRVGFIGLGAMGFG MATHLVKSNFCVLGYDVYRPTLIRFESAGGLIGTSPADVSKDVDVLVVMVTNEAQAES VLYGDLGAVSALPSGASIILSSTVSPAFVSQLERRLQNEGKDLKLVDAPVSGGVKRAS MGELTIMAAGSDDALKSSGLVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIAASA EAMAFGARLGLNTRVLFDIITNSGATSWMFENRVPHMLDNDYTPYSALDIFVKDLGIV ARECSTRKVPLHISTMAHQLFLAGSAAGWGRQDDAGVVKVYETLTGVKVEGKLPALKK EVVLQSIPPEWPVDPINDIHRLNQKNSKTLVVLDDDPTGTQTVHDVEVLTEWSVESLV EQFRKKPICFFILTNSRSLSSEKATALIKDICSSLLTAAKSVGNIDYTVVLRGDSTLR GHFPEEPDAAVSVIGQVDAWILCPFFLQGGRYTIEDIHYVADSDWLVPAGDTEFAKDA AFGYKSSNLREWVEEKTAGRIPASSVASISIQLLRQGGPDAVCEHLCSLEKGSTCIVN AVSERDMAVFAAGMIQAELKGKSFLCRSAASFVSARIGIIPKARILPKDLGKKKERSG GLIVVGSYVPKTTKQQVEELQSQYGHMLKSIEVSVHKVAMKSLEEREEEINRTAEMAS VFLAAHKDTLIMSSRELITGKTASESLEINFKVSSALVEVVRRITTRPCYILAKGGIT SSDLATKALEAKRAKVVGQALAGIPLWELGSESRHPGVPYIVFPGNVGDSKALAEVVR SWAHPLRLSSTKEILLNAESGGYAVGAFNVYNMEGVEAVVAAAEQERSPAILQVHPGA FKQGGITLVACCISAAEQASVPITVHFDHGTSKKELLDSLELGFDSIMADGSHLPFKD NISYTKHISNLAHSKDMLVEAELGRLSGTEDDLTVEDYEARLTDVNQAQEFIDETGID ALAVCIGNVHGKYPASGPNLKLDLLEDLYALSSKKGVFLVLHGASGLSKELVKGCIER GVRKFNVNTEVRKAYMDSLRNPKGDLVHVMASAKEAMKAVIAEKMHLFGSAGKA" CDS complement(join(7065403..7065582,7065928..7066111, 7066880..7067076,7067249..7067314,7067943..7068017, 7069020..7069130,7069211..7069299,7069647..7069791, 7070607..7070704,7070959..7071100,7071261..7071308, 7071397..7071567,7071672..7071701)) /locus_tag="TCM_012876" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Ketose-bisphosphate aldolase class-II family protein isoform 5" /protein_id="EOY21356.1" /db_xref="Phytozome:POPTR_0015s04720.1" /db_xref="TAIR:AT1G18270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IAP5" /translation="MAVFAAGMIQAELKGKSFLCRSAASFVSARIGIIPKARILPKDL GKKKERSGGLIVVGSYVPKTTKQVEELQSQYGHMLKSIEVSVHKVAMKSLEEREEEIN RTAEMASVFLAAHKDTLIMSSRELITGKTASESLEINFKVSSALVEVVRRITTRPCYI LAKGGITSSDLATKALEAKRAKVVGQALAGIPLWELGSESRHPGVPYIVFPGNVGDSK ALAEVVRSWAHPLRLSSTKEILLNAESGGYAVGAFNVYNMEGVEAVVAAAEQERSPAI LQVHPGAFKQGGITLVACCISAAEQASVPITVHFDHGTSKKELLDSLELGFDSIMADG SHLPFKDNISYTKHISNLAHSKDMLVEAELGRLSGTEDDLTVEDYEARLTDVNQVTVF QFPVFRRNNILINPALDKPSVAEVLSLTFLFVQDLYALSSKKGVFLVLHGASGLSKEL VKGCIERGVRKFNVNTEVRKAYMDSLRNPKGDLVHVMASAKEAMKAVIAEKMHLFGSA GKA" mRNA complement(join(7065985..7066008,7066695..7066805, 7066888..7067076,7067249..7067314,7067943..7068017, 7069020..7069130,7069211..7069791,7070607..7070704, 7070959..7071100,7071261..7071308,7071397..7071567, 7071672..7071740,7073802..7073921,7074025..7074097, 7074261..7074379,7074491..7074610,7074762..7074849, 7080355..7080566,7083078..7083124,7083972..7084050, 7084153..7084217,7086199..7086253,7086355..7086431, 7087270..7087350,7087416..7087496,7089600..7089675, 7090383..7090577,7090741..7090784,7090899..7090977, 7092209..7092287,7093117..7093254,7093472..7093520, 7093632..7093686,7094496..7094572,7095222..7095302, 7095385..7095465,7096604..7096679,7097656..7097751)) /locus_tag="TCM_012876" /product="Ketose-bisphosphate aldolase class-II family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008461001" /inference="similar to AA sequence:Phytozome:GSVIVT01008461001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc572t13; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc572t16; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2410t7" mRNA complement(join(7065985..7066008,7066695..7066805, 7066888..7067076,7067249..7067314,7067943..7068017, 7069020..7069130,7069211..7069299,7069647..7069791, 7070607..7070704,7070959..7071100,7071261..7071308, 7071397..7071567,7071672..7071740,7073802..7073921, 7074025..7074097,7074261..7074379,7074491..7074610, 7074762..7074849,7080355..7080566,7083078..7084050, 7084153..7084217,7086199..7086253,7086355..7086431, 7087270..7087350,7087416..7087496,7089600..7089675, 7090383..7090577,7090741..7090784,7090899..7090977, 7092209..7092287,7093117..7093254,7093472..7093520, 7093632..7093686,7094496..7094572,7095222..7095302, 7095385..7095465,7096604..7096679,7097656..7097751)) /locus_tag="TCM_012876" /product="Ketose-bisphosphate aldolase class-II family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008461001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc572t16; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc572t16; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2410t7" CDS complement(join(7069588..7069791,7070607..7070704, 7070959..7071100,7071261..7071308,7071397..7071567, 7071672..7071740,7073802..7073921,7074025..7074097, 7074261..7074379,7074491..7074610,7074762..7074849, 7080355..7080566,7083078..7083124,7083972..7084050, 7084153..7084217,7086199..7086253,7086355..7086431, 7087270..7087350,7087416..7087496,7089600..7089675, 7090383..7090577,7090741..7090784,7090899..7090977, 7092209..7092287,7093117..7093254,7093472..7093520, 7093632..7093686,7094496..7094572,7095222..7095302, 7095385..7095465,7096604..7096679,7097656..7097751)) /locus_tag="TCM_012876" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Ketose-bisphosphate aldolase class-II family protein isoform 4" /protein_id="EOY21355.1" /db_xref="Phytozome:GSVIVT01008461001" /db_xref="TAIR:AT1G18270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IAP5" /translation="MAGVVGFVGLDRLSLDMAALLLRAGYRVQAFEVQKLLMGEFLKL GGTECISLMETGKGVAALIVLISHADQINDVIFGHDDALKGLQKDKVIILHSTILPSY IQNLEKKLREDGLATSVVDAYVYKATSDNLNGKVVVMSSGRSDAISKARPFLSAMCEK LYIFEGETGAGSKIKLVTELLEGIHLMAAVEAISLGVHAGIHPWIIYDIISNAAGNSW VFKNYIPQLLRGSVKCHFLNPFILNLGIVLDMAKSLTFPLPLLATAHQQLVLGSSHGN GDDNTPLVQIWDQVYGVNTADAANTELYSPEQLASQIIAKSKTVNRVGFIGLGAMGFG MATHLVKSNFCVLGYDVYRPTLIRFESAGGLIGTSPADVSKDVDVLVVMVTNEAQAES VLYGDLGAVSALPSGASIILSSTVSPAFVSQLERRLQNEGKDLKLVDAPVSGGVKRAS MGELTIMAAGSDDALKSSGLVLSVPHMLDNDYTPYSALDIFVKDLGIVARECSTRKVP LHISTMAHQLFLAGSAAGWGRQDDAGVVKVYETLTGVKVEGKLPALKKEVVLQSIPPE WPVDPINDIHRLNQKNSKTLVVLDDDPTGTQTVHDVEVLTEWSVESLVEQFRKKPICF FILTNSRSLSSEKATALIKDICSSLLTAAKSVGNIDYTVVLRGDSTLRGHFPEEPDAA VSVIGQVDAWILCPFFLQGGRYTIEDIHYVADSDWLVPAGDTEFAKDAAFGYKSSNLR EWVEEKTAGRIPASSVASISIQLLRQGGPDAVCEHLCSLEKGSTCIVNAVSERDMAVF AAGMIQAELKGKSFLCRSAASFVSARIGIIPKARILPKDLGKKKERSGGLIVVGSYVP KTTKQVEELQSQYGHMLKSIEVSVHKVAMKSLEEREEEINRTAEMASVFLAAHKDTLI MSSRELITGKTASESLEINFKVSSALVEVVRRITTRPCYILAKGGITSSDLATKALEA KRAKVVGQALAGIPLWELGSESRHPGVPYIVFPGKFLVLFHLFQQILLKAKL" gene complement(7075785..7077221) /locus_tag="TCM_012883" /note="dbxref CacaoGD:Thecc1EG012883" mRNA complement(7075785..7077221) /locus_tag="TCM_012883" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0022s00540.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s02870.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2412t1" CDS complement(7075861..7076475) /locus_tag="TCM_012883" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21358.1" /db_xref="Phytozome:POPTR_0003s02870.1" /translation="MIEIIDQIQDSTLKREYLQKLKDSIKEKSDKTNLLNHEPIYNIK SIIFEKYEKTKPRKITKEELNLEINTIKAEISELKKEQQQIKRQIEFVKNTKIQTNQC SFESETEDQKTQEYMMILIEVSTQRYLIKIKLLINEEFQLETIALVDTSADQNCIRER IIPTKYYDKTIEGLKTANDEKLKITYKISNAEICNQGIKFKTPF" mobile_element 7079922..7079988 /note="source:CACAO_M_E22186_F143_scaffold_3 9956 10023" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(7083967..7084050,7084153..7084217, 7086199..7086253,7086355..7086431,7087270..7087350, 7087416..7087496,7089600..7089675,7090383..7090577, 7090741..7090784,7090899..7090977,7092209..7092287, 7093117..7093254,7093472..7093520,7093632..7093686, 7094496..7094572,7095222..7095302,7095385..7095465, 7096604..7096679,7097656..7097751)) /locus_tag="TCM_012876" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ketose-bisphosphate aldolase class-II family protein isoform 3" /protein_id="EOY21354.1" /db_xref="TAIR:AT1G18270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IAP5" /translation="MAGVVGFVGLDRLSLDMAALLLRAGYRVQAFEVQKLLMGEFLKL GGTECISLMETGKGVAALIVLISHADQINDVIFGHDDALKGLQKDKVIILHSTILPSY IQNLEKKLREDGLATSVVDAYVYKATSDNLNGKVVVMSSGRSDAISKARPFLSAMCEK LYIFEGETGAGSKIKLVTELLEGIHLMAAVEAISLGVHAGIHPWIIYDIISNAAGNSW VFKNYIPQLLRGSVKCHFLNPFILNLGIVLDMAKSLTFPLPLLATAHQQLVLGSSHGN GDDNTPLVQIWDQVYGVNTADAANTELYSPEQLASQIIAKSKTVNRVGFIGLGAMGFG MATHLVKSNFCVLGYDVYRPTLIRFESAGGLIGTSPADVSKDVDVLVVMVTNEAQAES VLYGDLGAVSALPSGASIILSSTVSPAFVSQLERRLQNEGKDLKLVDAPVSGGVKRAS MGELTIMAAGSDDALKSSGLVLSVPHMLDNDYTPYSALDIFVKDLGIVARECSTRKVP LHISTMAHQLFLAG" mobile_element complement(7102792..7103456) /note="source:CACAO_M_S_E89272_F5_scaffold_8 14910 15554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7103464..7104107) /note="source:CACAO_M_E5899_F5_scaffold_2 22089 22697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7104170..7104279) /note="source:scaffold_5_CACTA_0596 13709 13801" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7104696..7105235 /note="source:INTACT409F_F47_scaffold_4-int 16257 16967" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7105249..7107017 /note="source:INTACT88_F12_scaffold_4-int 12227 13989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7107023..7107660 /note="source:CACAO_M_S_E89272_F5_scaffold_8 6919 7577" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7107651..7107691 /note="source:INTACT409F_F47_scaffold_4-int 15743 15783" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7107656..7108282) /note="source:CACAO_M_E5899_F5_scaffold_2 22065 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7108353..7108462) /note="source:scaffold_5_CACTA_0596 13709 13801" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7108757..7109162 /note="source:INTACT409F_F47_scaffold_4-int 16561 16963" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7109180..7109515 /note="source:INTACT88_F12_scaffold_4-int 12227 12560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7109514..7109884) /note="source:INTACT88_F12_scaffold_4-int 12227 12594" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7109898..7110452) /note="source:INTACT409F_F47_scaffold_4-int 16257 16967" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7110854..7110956 /note="source:scaffold_5_CACTA_0596 13709 13794" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7111032..7111673 /note="source:CACAO_M_E5899_F5_scaffold_2 22063 22701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7111660..7112157) /note="source:INTACT88_F12_scaffold_4-int 12227 12720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7112171..7112681) /note="source:INTACT409F_F47_scaffold_4-int 16257 16967" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7113082..7113191 /note="source:scaffold_5_CACTA_0596 13709 13801" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7113260..7113891 /note="source:CACAO_M_E5899_F5_scaffold_2 22063 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7113881..7114100) /note="source:CACAO_M_S_E89272_F5_scaffold_8 14068 14286" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7113931..7114123 /note="source:INTACT88_F12_scaffold_4-int 14288 14479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7115381..7115437 /note="source:CACAO_M_E48452_F5_scaffold_6 14933 14985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7115382..7115424) /note="source:INTACT242_F12_scaffold_1-int 15453 15492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7115415..7121981) /note="source:CACAO_M_S_E65068_F306_scaffold_5 6271 12544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7121958..7125334) /note="source:CACAO_M_E48452_F5_scaffold_6 7177 10542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7125335..7128116 /note="source:INTACT226_F51_scaffold_1-int 7675 10444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7128084..7130988 /note="source:CACAO_M_E12700_F15_scaffold_3 1 2873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7130990..7131781 /note="source:CACAO_M_E5899_F5_scaffold_2 6968 7761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7131780..7141901) /note="source:INTACT754_F12_scaffold_5-int 3 10126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7146228..7149177 /note="source:CACAO_M_E12703_F15_scaffold_3 1 2950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7150295..7151404 /note="source:INTACT295_F13_scaffold_9-int 6464 7538" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7151403..7154097 /note="source:CACAO_M_E45230_F44_scaffold_6 1 2694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7154198..7155524) /note="source:INTACT124_F12_scaffold_10-int 3460 4718" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7157952..7165248 /locus_tag="TCM_012888" /note="dbxref CacaoGD:Thecc1EG012888" mRNA join(7157952..7158010,7164193..7164351,7164701..7164988, 7165067..7165248) /locus_tag="TCM_012888" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" mobile_element complement(7163051..7163121) /note="source:CACAO_M_E65323_F12_scaffold_9 9856 9935" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(7164289..7164351,7164701..7164988,7165067..7165222) /locus_tag="TCM_012888" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21359.1" /translation="MMFENLTDFIGALKSMTNIAKTPFTLHSVRPPRYILIQIYLKLQ YLNRGNINIITINGNSNIKYQLTNLLTHRYQEKPFNVPIINMKMDSHPQIGNNNNFEE STIAAINAVGLTKTQNIKYKIRAIITDIDCSNGWFYNSCNKYGLALRFCAEKYWCTQH DEKTPLPT" mobile_element 7165662..7168600 /note="source:CACAO_M_E23109_F230_scaffold_4 1 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7168732..7168753 /note="source:INTACT563_F255_scaffold_10-int 17220 17249" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7168754..7171906 /note="source:CACAO_M_E12706_F328_scaffold_3 1 3153" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7173981..7178365 /locus_tag="TCM_012889" /note="dbxref CacaoGD:Thecc1EG012889" mRNA join(7173981..7174189,7175990..7176718,7176788..7177013, 7177597..7178365) /locus_tag="TCM_012889" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001656t2" /inference="similar to AA sequence:ricco:29653.m000305" /note="quality class is strong-expresste, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2268t1" mobile_element 7176104..7186144 /note="source:CACAO_PIF_E54_scaffold_3 1 10041" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(7176233..7176718,7176788..7177013,7177597..7178105) /locus_tag="TCM_012889" /note="dbxref ricco:29653.m000305; paralog of Thecc1EG001656t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21360.1" /db_xref="TAIR:AT5G41980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHY5" /translation="MSADDQFLSAEDSFLMESSDDEKDGVYGNYMPKELGHSLASNGT KFVDEVLNGQSERCLENFRMDKPVFYKLCDILQGKGLLRHTNRIKIEEQLAIFLFIIG HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLEFFQPPGSDVPPQISQDPRFYPY FKDCVGAVDGIHIPVMVGVDEQGPFRNKNGLLSQNVLAACSFDLKFHYVLAGWEGSAS DLRVLNSALTRRNKLQVPEGRYYLVDNKYANMPGFIAPYFGVPYNSNEFSSGYHLQDA KELFNQRHFLLRNATDRTFGALKERFPILMSAPPYPLQTQVKLVVAACALHNYIRREK PDDLLFKMYEPETVQQIEESLPPLEVEQAMMHIDNHDLEVGFEAEQLELSSQLRDSIA TEMWDDYIRDLEAM" gene 7178542..7182876 /locus_tag="TCM_012890" /note="dbxref CacaoGD:Thecc1EG012890" mRNA join(7178542..7179099,7179402..7179592,7179696..7179768, 7182051..7182137,7182835..7182876) /locus_tag="TCM_012890" /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024670001" /inference="similar to AA sequence:Phytozome:GSVIVT01024670001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8301t2" mRNA join(<7178807..7179099,7179402..7179592,7179693..7179768, 7182051..7182575) /locus_tag="TCM_012890" /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024670001" /inference="similar to AA sequence:Phytozome:GSVIVT01024670001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is weak, protein is partial5; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2276t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8301t2" CDS join(<7178808..7179099,7179402..7179592,7179693..7179768, 7182051..7182136) /locus_tag="TCM_012890" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein isoform 2" /protein_id="EOY21362.1" /db_xref="Phytozome:GSVIVT01024670001" /db_xref="TAIR:AT3G10110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2RVP7" /translation="SCGPKTCLFIRNLPSYGGSSPHPHTCVTRFFLGILWNWSLGKMS ATNSESDSKNEAASSSEAEPPQIKGIRMPTMEEIRAQEVWDNCAVRSVVSGVMGGGLG LFMGLFLGALDNPIMQDQMTGRQQFVYTAKQMGQRSWGSAKAFAVMGFVFSAVECVVE KKARAKHDTTNTVVAGCVTGGTMSARGGPKAACAGCAGFAAFSVLIEKFFERHT" CDS join(7178934..7179099,7179402..7179592,7179696..7179768, 7182051..7182136) /locus_tag="TCM_012890" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein isoform 1" /protein_id="EOY21361.1" /db_xref="Phytozome:GSVIVT01024670001" /db_xref="TAIR:AT3G10110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2RVP7" /translation="MSATNSESDSKNEAASSSEAEPPQIKGIRMPTMEEIRAQEVWDN CAVRSVVSGVMGGGLGLFMGLFLGALDNPIMQDQMTGRQQFVYTAKQMGQRSWGSAKA FAVMGFVFSAVECVVEKARAKHDTTNTVVAGCVTGGTMSARGGPKAACAGCAGFAAFS VLIEKFFERHT" gene 7187294..7188435 /locus_tag="TCM_012893" /note="dbxref CacaoGD:Thecc1EG012893" mRNA join(7187294..7187654,7187761..7188426) /locus_tag="TCM_012893" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008463001" /inference="similar to AA sequence:Phytozome:Glyma09g30510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03056t00001" mRNA join(7187387..7187654,7187787..7188435) /locus_tag="TCM_012893" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008463001" /inference="similar to AA sequence:Phytozome:Glyma09g30510.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1412t1; alternateUTRof:Thecc1EG012893t2; inference alignment:Newbler:10:TSA:cgbaB_g03056t00001" CDS join(7187571..7187654,7187761..7188282) /locus_tag="TCM_012893" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21363.1" /db_xref="Phytozome:Glyma09g30510.1" /db_xref="TAIR:AT3G17950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEE0" /translation="MLDPASDLIPPPSSPTISSVSSSDLDTESTGSFFHDRSTTLGTL MGVSFPAITFRAPSQHRHETQPTNAGSLSSTGSKPKKRRALTSVAFGAERLGRRRRRW WQLCRDDDAKPSSLGEFLEVERRFGDGAFYGAAAELEGVMGTPQDEHQEARNGRILFA DGRVLPPPPPSGDDDDEGTSTAGLLCRFPVSLTGICSGGVG" mRNA join(7187629..7187654,7187768..7188435) /locus_tag="TCM_012893" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008463001" /inference="similar to AA sequence:Phytozome:Glyma09g30510.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1412t2; inference alignment:Newbler:10:TSA:cgbaB_g03056t00001" CDS 7187809..7188282 /locus_tag="TCM_012893" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21364.1" /db_xref="Phytozome:Glyma09g30510.1" /db_xref="TAIR:AT3G17950.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEE0" /translation="MGVSFPAITFRAPSQHRHETQPTNAGSLSSTGSKPKKRRALTSV AFGAERLGRRRRRWWQLCRDDDAKPSSLGEFLEVERRFGDGAFYGAAAELEGVMGTPQ DEHQEARNGRILFADGRVLPPPPPSGDDDDEGTSTAGLLCRFPVSLTGICSGGVG" CDS 7187809..7188282 /locus_tag="TCM_012893" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21365.1" /db_xref="Phytozome:Glyma09g30510.1" /db_xref="TAIR:AT3G17950.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEE0" /translation="MGVSFPAITFRAPSQHRHETQPTNAGSLSSTGSKPKKRRALTSV AFGAERLGRRRRRWWQLCRDDDAKPSSLGEFLEVERRFGDGAFYGAAAELEGVMGTPQ DEHQEARNGRILFADGRVLPPPPPSGDDDDEGTSTAGLLCRFPVSLTGICSGGVG" gene complement(7195799..7200075) /locus_tag="TCM_012894" /note="dbxref CacaoGD:Thecc1EG012894" mRNA complement(join(7195799..7196211,7196771..7196864, 7197673..7197796,7197989..7198206,7198440..7198520, 7198598..7199167,7199243..7199332,7200009..7200075)) /locus_tag="TCM_012894" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(7195935..7196211,7196771..7196864, 7197673..7197796,7197989..7198206,7198440..7198520, 7198598..7199167,7199243..7199312)) /locus_tag="TCM_012894" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21366.1" /translation="MARTRFTSKVHYGDPGRAVLGKKKNWDDSIIKEREEDCFRETVR EKSIPSTEMEGQGTLESESEEESCDHTNNHESSDESIEERFPRHEHQSLGREVDGNAI QGGLIDMTDFLPSTIQSVGGDKVNDITGLNDNNMDAATRVGDDDVNAAGGVGDDDVDD ATAVGGDDVNVINQNDQSALGFGFGTFQHNNANIIAGRTFGVTRSIQNNFGIDGVLNT TCNGSSSRGVLDSTRNSSSSLRGIMDSLGTTLEIASSPWADISLEELQKMVGLMKDVL LCGCHIKCLDTCIAKAKEYVMTKVDKPNIEAKIKELDYFILCNHMSVSQVSLCVAKRD SQLYIKESNPQLNKKENDILQVLLVREKGHVVMSESRCAEVAKRKTGAVLKAFLGASM LGTPLSASAFGTPLGASMFGAPLGTFVLGKLLGASALRTPLDISVLGTPLGAFALGMP SGAFILGMPLGASTLGIPLGTFALKTP" mobile_element 7201830..7207749 /note="source:CACAO_M_S_E17578_F152_scaffold_3 1 5920" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7207322..7210428 /locus_tag="TCM_012896" /note="dbxref CacaoGD:Thecc1EG012896" mRNA join(7207322..7207743,7208147..7208568,7208669..7209032, 7209157..7209306,7209641..7210428) /locus_tag="TCM_012896" /product="Ubiquitin-protein ligase, putative" /inference="alignment:exonerate- protein:2:ricco:30169.m006413.2" /inference="similar to AA sequence:ricco:30169.m006413" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(7207408..7207743,7208147..7208568,7208669..7209032, 7209157..7209306,7209641..7209949) /locus_tag="TCM_012896" /note="dbxref ricco:30169.m006413" /codon_start=1 /product="Ubiquitin-protein ligase, putative" /protein_id="EOY21367.1" /translation="MAAPQASGWPVLPALWQSAWAVCGLLLCPSLPAILGANFLRTCA PRLRAGQRTLPVRWLARPVCLWVPMPPSLLKPSRGSSPRCSSIFELAHPLPSLKPLPS GCLALLNKRGGNAEPEEIDTTVDHITSWPKEVIAHILSRLTLEKAVRTSVFSSKWRLL WTHFRGFLNFDASDVAYVMSDPPLRGEPFHTGESFHTERLNFRTWVNKILQSLRAPTI KGLRICFDVYSNLDIDNWISFAIDKEAQSLELDLTDVDLSDQALDYFLTQCPSLEVLR LIKIASLTSFIASESLVNLKCLELRYCNFLKEVEISAINLTSLSYTGIKVAPVALKNL LHLVEVLFGGACLSRIYHTSQLQINLSQLETLGFDVFGTNLALPFLKTILRMSNVKHL ELEVQIKHVSCSFLSITSLLKAAPLLHTFTLKIMCWADWSSRELSKISLENPYPCLKV VKLYGFVGVPAEVEMIFHLRENAPLLEKLIIDPCQPFFLGSKAASMFRKSWDYKSAKL LAMELQAKIPPGIEFIVA" mobile_element complement(7212094..7212630) /note="source:CACAO_M_E58601_F7_scaffold_9 9619 10118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7212840..7214249) /note="source:scaffold_6_CACTA_0702 8212 9681" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7217552..7217855 /note="source:scaffold_6_CACTA_0702 16 310" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7217973..7217995) /note="source:scaffold_2_CACTA_0261 86 120" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7217996..7220341) /note="source:CACAO_M_E43689_F345_scaffold_5 336 2673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7220644..7221603 /note="source:CACAO_M_E47740_F12_scaffold_6 5776 6721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7221691..7221974) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18559 18840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7222799..7222916) /note="source:CACAO_M_E3884_F22_scaffold_1 6994 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7230752..7233733 /note="source:CACAO_M_S_E17581_F7_scaffold_3 1 2982" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7237034..7237958) /locus_tag="TCM_012897" /note="dbxref CacaoGD:Thecc1EG012897" mRNA complement(7237034..7237958) /locus_tag="TCM_012897" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0520s00220.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s04770.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2540t1" CDS complement(7237063..7237557) /locus_tag="TCM_012897" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21368.1" /db_xref="Phytozome:POPTR_0015s04770.1" /db_xref="TAIR:AT1G18290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2D4" /translation="MGNAASCAPSIISSGVVKVLFPDGNMQMYTKPVKAADLMLENPG QFVCDSSSLKVGYRIHGLTADEVLERRQVYFLLPMELLYSVLTHEEMSCLTCKATKAL KHATFNNFGKIFPVFTEFCIFPSEAKTPENPVSKTADPVERYSKQRSWRPALETIVET PCRQ" gene complement(7239705..7242388) /locus_tag="TCM_012898" /note="dbxref CacaoGD:Thecc1EG012898" mRNA complement(join(7239705..7240496,7240683..7240767, 7241150..7241317,7241406..7241497,7241773..7241876, 7242132..7242388)) /locus_tag="TCM_012898" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma07g34840.1" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(7240276..7240496,7240683..7240767, 7241150..7241317,7241406..7241497,7241773..7241876, 7242132..7242310)) /locus_tag="TCM_012898" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21369.1" /db_xref="Phytozome:Glyma07g34840.1" /translation="MHMSKCLMIKNNVPKKFWAKDANTVVYLLNLLPTQAVNDMTPFE AWFGYKSSLNHLKVFGGTRSTDDIYHRSFVVAKSQLLLQKQQNVLNEELLYIKYAFLI GVMEEEIYVEQPDGFIQNTNEDKIFVKSCNEATLYIYSSSAKPSMIVSLYVVDLLVIE EDNITLQRFKEKMHNEFDMTDVSLSRYSDSDWAGNVDDLRNLSGCVFTLAISKNLVFH GKSKHIQVKFHAIRDAEKNGDIHVQYFSSELQLTDIMTKALLGPGLEYLRSKLNIYHA GIKEEC" mobile_element 7243755..7244561 /note="source:CACAO_M_E43672_F60_scaffold_5 1 790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7244557..7245977 /note="source:INTACT280_F60_scaffold_5-int 6792 8214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7245976..7246907 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3831 4763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7248589..7259264 /note="source:CACAO_M_E12710_F15_scaffold_3 1 10676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7259113..7259281) /note="source:INTACT901F_F95_scaffold_6-int 11826 11997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7266454..7266493 /note="source:CACAO_M_E186122_F15_scaffold_32 5549 5589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7270386..7277721 /note="source:INTACT522_F240_scaffold_3-int 1 7336" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7283143..7285589 /locus_tag="TCM_012900" /note="dbxref CacaoGD:Thecc1EG012900" mRNA join(7283143..7283330,7283758..7285589) /locus_tag="TCM_012900" /product="Ribonuclease H-like superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT4G29090.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031959t1" /inference="similar to AA sequence:TAIR:AT4G29090.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2221t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6243t1" CDS join(7283221..7283330,7283758..7285357) /locus_tag="TCM_012900" /note="paralog of Thecc1EG031959t1" /codon_start=1 /product="Ribonuclease H-like superfamily protein" /protein_id="EOY21370.1" /db_xref="TAIR:AT4G29090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4NCI7" /translation="MAKASKDISGIEICRGGSNVTHLLFADDCMLFGKVKRYIGRAGN RCLFKFSRRLGFRDTRCFNLALLAKQGWRLQMQQPTLAYKILKARYFPRVHFMDAPVG SNPSYLWRSIKESQQIIKKGLVWRVGNGNDIQVLEDSWIPYETPRVAMAYEENVSNSM MVSELIDARCGKWDEAKVKLCFPLYESNLILSIPLSVRLSVDRQVRVVSKHGQYTVKF GYRLISSLLDDSEPGCSSDSFDGFWKEVWKLSIPRKIIFFMWKALKGALPTKKALSHR KINVDNICVFCQEDEETDFHILCYCQFARATWLSSKWGFRDTGAHSTSVFDWIFQVSC NLGPKDVGEIACILWAIWKARNLRIFGNQIMNPVQVLKLGLDMNNQYHMAMEVSATEN RVLERENRGFRSRGLTLHSDAAMDQVDGTTRVGAGFIIRRLNGGFFCAVGRKIQYCAS VEEVELRALVWALSYCVKEQIMLADVFLDNQVVTGWIKKQQFTGALEHLIEDCTILME RINCQAIDFCSRETNRTAHSIAQIAKRMMDEMIEWKDSSHLPVLIQEAVDNDRVLFLR HEG" gene 7285642..7289409 /locus_tag="TCM_012901" /note="dbxref CacaoGD:Thecc1EG012901" mRNA join(7285642..7285934,7287037..7287185,7288096..7288254, 7288996..7289409) /locus_tag="TCM_012901" /product="MAR-binding filament-like protein 1-1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008459001" /inference="similar to AA sequence:Phytozome:POPTR_0015s04810.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:PASA:2:TSA:puevd3b012460t1a2; inference alignment:Newbler:10:TSA:cgbaL_g02848t00001" mRNA join(7285642..7285934,7287037..7287185,7287649..7287735, 7288096..7288254,7288996..7289136) /locus_tag="TCM_012901" /product="MAR-binding filament-like protein 1-1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008459001" /inference="similar to AA sequence:Phytozome:POPTR_0015s04810.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02848t00001" CDS join(7285820..7285934,7287037..7287185,7287649..7287735, 7288096..7288254,7288996..7289094) /locus_tag="TCM_012901" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="MAR-binding filament-like protein 1-1 isoform 1" /protein_id="EOY21371.1" /db_xref="Phytozome:POPTR_0015s04810.1" /db_xref="TAIR:AT3G17930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PID9" /translation="MSSPLHGHPTVSPTSFLGVSAFQFLQPPTRSAAVSFLRGTAIAQ ILYKKGTSLYLQNRLNNSRSKKLISVAPRCSRSSNSNESKDQSKTPFGYTRKDVLLIG VGVTVAGVGLKSGLEFAGVDPLQAGNVVQLVLVLGLTVGWISTYIFRVSNKEMTYAQQ LRDYEDKVMQKRLEGLTEAELEALLEQVDEEKRSQASGEQVN" CDS join(7285820..7285934,7287037..7287185,7288096..7288254, 7288996..7289094) /locus_tag="TCM_012901" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="MAR-binding filament-like protein 1-1 isoform 2" /protein_id="EOY21372.1" /db_xref="Phytozome:POPTR_0015s04810.1" /db_xref="TAIR:AT3G17930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PID9" /translation="MSSPLHGHPTVSPTSFLGVSAFQFLQPPTRSAAVSFLRGTAIAQ ILYKKGTSLYLQNRLNNSRSKKLISVAPRCSRSSNSNESKDQSKFAGVDPLQAGNVVQ LVLVLGLTVGWISTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALLEQVD EEKRSQASGEQVN" gene complement(7289181..7300696) /locus_tag="TCM_012902" /note="dbxref CacaoGD:Thecc1EG012902" mRNA complement(join(7289181..7290129,7292505..7292662, 7293549..7293655,7294025..7294150,7294233..7294314, 7294444..7294517,7295059..7296542,7296750..7296899, 7297067..7297309,7299237..7299494,7299736..7300696)) /locus_tag="TCM_012902" /product="Binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04260.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04260.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2270t2" mRNA complement(join(7289181..7290167,7292505..7292662, 7293549..7293655,7294025..7294150,7294233..7294314, 7294444..7294517,7295059..7296542,7296750..7296899, 7297067..7297309,7299237..7299494,7299736..7300696)) /locus_tag="TCM_012902" /product="Binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04260.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04260.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b012461t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2270t2" CDS complement(join(7289884..7290129,7292505..7292662, 7293549..7293655,7294025..7294150,7294233..7294314, 7294444..7294517,7295059..7296542,7296750..7296899, 7297067..7297309,7299237..7299494,7299736..7300176)) /locus_tag="TCM_012902" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Binding protein, putative isoform 1" /protein_id="EOY21373.1" /db_xref="Phytozome:POPTR_0012s04260.1" /db_xref="TAIR:AT3G17920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SXS1" /translation="MAIVTGDRYLEKLVKFVDEEAGALIEGTKVLKLNPAGLHYVQSR LEALQELERLLAGAPVDYLRAYVSDLGDHRALEQLRRILRLLTTLKVVSALPPPARDP TPLSLLPFGRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTDALRHVFASRIAE IKGSPQWNRLSFVSCACNRLVLMDESLQLLPAVETLDLSRNKFAKVDNLRKCARLKHL DLGFNQLQTISSFSEVSCRIVKLVLRNNALTTLRGIETLKSLEGLDVSYNIISNFSEL EFLASLPSLQSLWLEGNPLCGARWYRAQVFSYFSHPENLKLDDKEISTREYWKRKIIV ASRQKRPSSFGFYSPAKVDAEGEGGINKKRIKVSRLACIEGERESTYICSDLDSVSCD NEIQSREENIISEDEAEIVDLMNRVEQLKKERSILWLREFKDWMDHASENFADDGGAR LHLGKENYKKSGKSERQLSESSRYVSDSVQASGDESSMNFLESDNSFADTSTGVHAHK YSDHIVPSGITGGVSLPGLRTVDLKQEYQKSYLHDETSSGSMQAESSHHNFVTVQGSN RMVENASVSQLNTINDITESNSSSAYPGSPPHYQEDLLHRRHNLVEEILQLSADSYSM ASSDSDTSCSEDDYCKVGLPVLGHLNRSVEGHSLSDLFEDNYHEKGNKVSDGSENGIC FIDSCAEHTFSTSKTVIANQPLQLSKDLDMVSHDLDIPSFTNQEADWLEKRKSRRKTK RRVISLLEENNMVGRKQVPQESNGNDACGADIEDMQGKHFLNGIDQKDFDKNQMRKNA ISTPLFDDAARYSDAKCSSQGKNDFIEDYFNKNVADLRVHETCMLYMRCNCILDQSVC KEREVALLLSSEEKLYVLLVGVAFDGSDTILDLLGCHKVEDIREVLVGLGLQIVRAYI EGSVAYLFITRSIEKSTQLLQTLKVFDSCAPNNKFSLRSLEKVQAQLFENEICGGSKI SIFQYSMVLFQQGGNEEESWNSRSLFVIGGHVLVCVEDIIQFSSLPNDASSPPYFSLD SCCNITDISEMVIEGRESHCVTLALECTTSGACSSTKAQKEVAASKKEKNVAGARRWK LKWFSEESLFQFVALMKAIHLGMALSPLLVRCVS" CDS complement(join(7290150..7290167,7292505..7292662, 7293549..7293655,7294025..7294150,7294233..7294314, 7294444..7294517,7295059..7296542,7296750..7296899, 7297067..7297309,7299237..7299494,7299736..7300176)) /locus_tag="TCM_012902" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Binding protein, putative isoform 2" /protein_id="EOY21374.1" /db_xref="Phytozome:POPTR_0012s04260.1" /db_xref="TAIR:AT1G48540.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SXS1" /translation="MAIVTGDRYLEKLVKFVDEEAGALIEGTKVLKLNPAGLHYVQSR LEALQELERLLAGAPVDYLRAYVSDLGDHRALEQLRRILRLLTTLKVVSALPPPARDP TPLSLLPFGRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTDALRHVFASRIAE IKGSPQWNRLSFVSCACNRLVLMDESLQLLPAVETLDLSRNKFAKVDNLRKCARLKHL DLGFNQLQTISSFSEVSCRIVKLVLRNNALTTLRGIETLKSLEGLDVSYNIISNFSEL EFLASLPSLQSLWLEGNPLCGARWYRAQVFSYFSHPENLKLDDKEISTREYWKRKIIV ASRQKRPSSFGFYSPAKVDAEGEGGINKKRIKVSRLACIEGERESTYICSDLDSVSCD NEIQSREENIISEDEAEIVDLMNRVEQLKKERSILWLREFKDWMDHASENFADDGGAR LHLGKENYKKSGKSERQLSESSRYVSDSVQASGDESSMNFLESDNSFADTSTGVHAHK YSDHIVPSGITGGVSLPGLRTVDLKQEYQKSYLHDETSSGSMQAESSHHNFVTVQGSN RMVENASVSQLNTINDITESNSSSAYPGSPPHYQEDLLHRRHNLVEEILQLSADSYSM ASSDSDTSCSEDDYCKVGLPVLGHLNRSVEGHSLSDLFEDNYHEKGNKVSDGSENGIC FIDSCAEHTFSTSKTVIANQPLQLSKDLDMVSHDLDIPSFTNQEADWLEKRKSRRKTK RRVISLLEENNMVGRKQVPQESNGNDACGADIEDMQGKHFLNGIDQKDFDKNQMRKNA ISTPLFDDAARYSDAKCSSQGKNDFIEDYFNKNVADLRVHETCMLYMRCNCILDQSVC KEREVALLLSSEEKLYVLLVGVAFDGSDTILDLLGCHKVEDIREVLVGLGLQIVRAYI EGSVAYLFITRSIEKSTQLLQTLKVFDSCAPNNKFSLRSLEKVQAQLFENEICGGSKI SIFQYSMVLFQQGGNEEESWNSRSLFVIGGHVLVCVEDIIQFSSLPNDASSPPYFSLD SCCNITDISEMIQEKK" mRNA complement(join(7291138..7291280,7292505..7292662, 7293549..7293655,7294025..7294150,7294233..7294317, 7294444..7294517,7295059..7296542,7296750..7296899, 7297067..7297309,7299237..7299494,7299736..7300464)) /locus_tag="TCM_012902" /product="Binding protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04260.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04260.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2270t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2270t2" CDS complement(join(7291275..7291280,7292505..7292662, 7293549..7293655,7294025..7294150,7294233..7294317, 7294444..7294517,7295059..7296542,7296750..7296899, 7297067..7297309,7299237..7299494,7299736..7300176)) /locus_tag="TCM_012902" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Binding protein, putative isoform 3" /protein_id="EOY21375.1" /db_xref="Phytozome:POPTR_0012s04260.1" /db_xref="TAIR:AT1G48540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SXS1" /translation="MAIVTGDRYLEKLVKFVDEEAGALIEGTKVLKLNPAGLHYVQSR LEALQELERLLAGAPVDYLRAYVSDLGDHRALEQLRRILRLLTTLKVVSALPPPARDP TPLSLLPFGRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTDALRHVFASRIAE IKGSPQWNRLSFVSCACNRLVLMDESLQLLPAVETLDLSRNKFAKVDNLRKCARLKHL DLGFNQLQTISSFSEVSCRIVKLVLRNNALTTLRGIETLKSLEGLDVSYNIISNFSEL EFLASLPSLQSLWLEGNPLCGARWYRAQVFSYFSHPENLKLDDKEISTREYWKRKIIV ASRQKRPSSFGFYSPAKVDAEGEGGINKKRIKVSRLACIEGERESTYICSDLDSVSCD NEIQSREENIISEDEAEIVDLMNRVEQLKKERSILWLREFKDWMDHASENFADDGGAR LHLGKENYKKSGKSERQLSESSRYVSDSVQASGDESSMNFLESDNSFADTSTGVHAHK YSDHIVPSGITGGVSLPGLRTVDLKQEYQKSYLHDETSSGSMQAESSHHNFVTVQGSN RMVENASVSQLNTINDITESNSSSAYPGSPPHYQEDLLHRRHNLVEEILQLSADSYSM ASSDSDTSCSEDDYCKVGLPVLGHLNRSVEGHSLSDLFEDNYHEKGNKVSDGSENGIC FIDSCAEHTFSTSKTVIANQPLQLSKDLDMVSHDLDIPSFTNQEADWLEKRKSRRKTK RRVISLLEENNMVGRKQVPQESNGNDACGADIEDMQGKHFLNGIDQKDFDKNQMRKNA ISTPLFDDAARYSDAKCSSQGKNDFIEDYFNKNVADLRVHETCMLYMRCNCILDQSVC KEREVALLLSSEEKLYVLLVGVAFDGSADTILDLLGCHKVEDIREVLVGLGLQIVRAY IEGSVAYLFITRSIEKSTQLLQTLKVFDSCAPNNKFSLRSLEKVQAQLFENEICGGSK ISIFQYSMVLFQQGGNEEESWNSRSLFVIGGHVLVCVEDIIQFSSLPNDASSPPYFSL DSCCNITDISEMH" mRNA complement(join(7294025..7294150,7294233..7294314, 7294414..7294517,7295059..7296542,7296750..7296899, 7297067..7297309,7299237..7299494,7299736..7300601)) /locus_tag="TCM_012902" /product="Outer arm dynein light chain 1 protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04260.1" /inference="similar to AA sequence:frave:gene09363" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1103t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2270t2" CDS complement(join(7294427..7294517,7295059..7296542, 7296750..7296899,7297067..7297309,7299237..7299494, 7299736..7300176)) /locus_tag="TCM_012902" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene09363" /codon_start=1 /product="Outer arm dynein light chain 1 protein, putative isoform 4" /protein_id="EOY21376.1" /db_xref="TAIR:AT1G48540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HYH4" /translation="MAIVTGDRYLEKLVKFVDEEAGALIEGTKVLKLNPAGLHYVQSR LEALQELERLLAGAPVDYLRAYVSDLGDHRALEQLRRILRLLTTLKVVSALPPPARDP TPLSLLPFGRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTDALRHVFASRIAE IKGSPQWNRLSFVSCACNRLVLMDESLQLLPAVETLDLSRNKFAKVDNLRKCARLKHL DLGFNQLQTISSFSEVSCRIVKLVLRNNALTTLRGIETLKSLEGLDVSYNIISNFSEL EFLASLPSLQSLWLEGNPLCGARWYRAQVFSYFSHPENLKLDDKEISTREYWKRKIIV ASRQKRPSSFGFYSPAKVDAEGEGGINKKRIKVSRLACIEGERESTYICSDLDSVSCD NEIQSREENIISEDEAEIVDLMNRVEQLKKERSILWLREFKDWMDHASENFADDGGAR LHLGKENYKKSGKSERQLSESSRYVSDSVQASGDESSMNFLESDNSFADTSTGVHAHK YSDHIVPSGITGGVSLPGLRTVDLKQEYQKSYLHDETSSGSMQAESSHHNFVTVQGSN RMVENASVSQLNTINDITESNSSSAYPGSPPHYQEDLLHRRHNLVEEILQLSADSYSM ASSDSDTSCSEDDYCKVGLPVLGHLNRSVEGHSLSDLFEDNYHEKGNKVSDGSENGIC FIDSCAEHTFSTSKTVIANQPLQLSKDLDMVSHDLDIPSFTNQEADWLEKRKSRRKTK RRVISLLEENNMVGRKQVPQESNGNDACGADIEDMQGKHFLNGIDQKDFDKNQMRKNA ISTPLFDDAARYSDAKCSSQGKNDFIEDYFNKNVADLRVHETCMLYMRCNCILDQSVC KEREVALLLSSEEKLYVLLVGVAFDGSGWIMK" gene 7302252..7309412 /locus_tag="TCM_012903" /note="dbxref CacaoGD:Thecc1EG012903" mRNA join(7302252..7302336,7305026..7305393,7307271..7307340, 7308254..7309412) /locus_tag="TCM_012903" /product="Ac-like transposase THELMA13" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025468t1" /inference="similar to AA sequence:frave:gene09597" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" gene 7302793..7305081 /locus_tag="TCM_012904" /note="dbxref CacaoGD:Thecc1EG012904" mRNA join(7302793..7302840,7302939..7303117,7304317..7305081) /locus_tag="TCM_012904" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039587t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS join(7302821..7302840,7302939..7303117,7304317..7304636) /locus_tag="TCM_012904" /note="paralog of Thecc1EG039587t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21378.1" /translation="MGRPSERVPNPVAGSGQEAPDPVLLVARSGWIFVESCQKGLYRR FSTLFDREIAVVTVVATANVISEQTNELLLKNHDLRLVGLKALPIANASFNKSTNRIK GRERKQWHNPCRGSERLNHPKQLNLSPNHGKGKQPVKKHDEHIYHHYGMVGHWSHTYH MPKHFANIYQAP" CDS join(7305044..7305393,7307271..7307340,7308254..7308844) /locus_tag="TCM_012903" /note="dbxref frave:gene09597; paralog of Thecc1EG025468t1" /codon_start=1 /product="Ac-like transposase THELMA13" /protein_id="EOY21377.1" /translation="MGTTEKNKDVCLFDSVMTNTILCGKHFFLSVTLREANVRSISSL VEIIDNFMNATIVLPNGTTLHIEDHYKVVDQRGIYLASKMYIVMSTNLRHFMSKIRNV STSPLIRNVSTIFRNFRLGLGSVERVSSAGFSLFTETEIDQLGATNEKKPCQPKKRKL TSKLWTFFERLPEKNSSDGKSKVKCKLCGYILNYESKYGTSNLKRHNDNCVRKYTRDI GQMIFSKEHNSMLMRSSKFDPKKFCELVVAAIVMHNLPLSFVEYTGIKSMLSYLREDV VLISRNTVKAHIIKMHKREKCKIQSLLQESPGRICLTFDLWTSIVIDGYMCLTAHFVD KN" mobile_element 7305949..7306062 /note="source:INTACT189_F49_scaffold_5-int 17813 17920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7320005..7320722) /note="source:CACAO_M_E950_F15_scaffold_1 1 713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7327908..7330699) /note="source:CACAO_M_E22484_F328_scaffold_3 6627 9917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7334348..7334557 /note="source:scaffold_8_CACTA_0859 1040 1257" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7334540..7336060 /note="source:INTACT591_F264_scaffold_1-int 19722 21280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7340712..7341025) /note="source:CACAO_M_S_E119191_F3_scaffold_9 1373 1688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7341023..7341904) /note="source:CACAO_M_S_E119191_F3_scaffold_9 217 1092" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7341961..7342178) /note="source:CACAO_M_S_E119191_F3_scaffold_9 1 224" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7343135..7350533) /locus_tag="TCM_012907" /note="dbxref CacaoGD:Thecc1EG012907" mRNA complement(join(7343135..7343401,7344260..7344393, 7344561..7344608,7345165..7345277,7346677..7346960, 7347048..7347222,7348660..7348898,7349910..7350010, 7350092..7350533)) /locus_tag="TCM_012907" /product="Surfeit locus 1 cytochrome c oxidase biogenesis protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04250.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04250.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1825t7" mRNA complement(join(7344071..7344608,7345165..7345277, 7346677..7346960,7347048..7347222,7348660..7348898, 7349910..7350010,7350092..7350533)) /locus_tag="TCM_012907" /product="Surfeit locus 1 cytochrome c oxidase biogenesis protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04250.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04250.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b012466t1a4; alternateUTRof:Thecc1EG012907t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1825t7" mRNA complement(join(7344101..7344393,7344471..7344608, 7345165..7345277,7346677..7346960,7347048..7347222, 7348660..7348898,7349495..7349742)) /locus_tag="TCM_012907" /product="Surfeit locus 1 cytochrome c oxidase biogenesis protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04250.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04250.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1819t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1395t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1825t7" mRNA complement(join(7344160..7344393,7344561..7344608, 7345190..7345277,7346677..7346960,7347048..7347222, 7348660..7348898,7349910..7350010,7350092..7350533)) /locus_tag="TCM_012907" /product="Surfeit locus 1 cytochrome c oxidase biogenesis protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04250.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04250.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b012466t1a3; alternateUTRof:Thecc1EG012907t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1825t7" mRNA complement(join(7344237..7344393,7344471..7344608, 7345190..7345277,7346677..7346960,7347048..7347222, 7348660..7348898,7349910..7350010,7350092..7350533)) /locus_tag="TCM_012907" /product="Surfeit locus 1 cytochrome c oxidase biogenesis protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04250.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04250.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b012466t1a2; alternateUTRof:Thecc1EG012907t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1825t7" mRNA complement(join(7344370..7344393,7344561..7344608, 7345165..7345277,7346677..7346960,7347048..7347222, 7348660..7348898,7349920..7350010,7350092..7350390)) /locus_tag="TCM_012907" /product="Surfeit locus 1 cytochrome c oxidase biogenesis protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04250.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04250.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1825t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1395t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1825t7" CDS complement(join(7345208..7345277,7346677..7346960, 7347048..7347222,7348660..7348898,7349910..7350010, 7350092..7350236)) /locus_tag="TCM_012907" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Surfeit locus 1 cytochrome c oxidase biogenesis protein isoform 1" /protein_id="EOY21379.1" /db_xref="Phytozome:POPTR_0012s04250.1" /db_xref="TAIR:AT3G17910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SE51" /translation="MASFSKTLTRLRPAGALYSFSNQLLPPKYWVPPASFSTAAAVSS SQSHDQEKGSTWSRWFLFLPGAITFGLGTWQIFRRQDKIKMLEYRQKRLQMEPLKLNN MPPSSENLESLEFRRVVCRGVFDDGRSIYVGPRSRSISGVTENGYYVITPLVPIANNA ESVQAPVLVNRGWVPRSWRDKSFEVPQEREKSSSIEAVPAQQSEQSWWWQFWSKKPKV VEDQAPAITSIEVIGVVRGSEKPSIFVPANDPNSRQWFYVDVPAIAVASGLPEDSLLI EDINENVNPSNPYPVPKDVNTLIRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLKQKK SRR" CDS complement(join(7345208..7345277,7346677..7346960, 7347048..7347222,7348660..7348898,7349910..7350010, 7350092..7350236)) /locus_tag="TCM_012907" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Surfeit locus 1 cytochrome c oxidase biogenesis protein isoform 1" /protein_id="EOY21380.1" /db_xref="Phytozome:POPTR_0012s04250.1" /db_xref="TAIR:AT3G17910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SE51" /translation="MASFSKTLTRLRPAGALYSFSNQLLPPKYWVPPASFSTAAAVSS SQSHDQEKGSTWSRWFLFLPGAITFGLGTWQIFRRQDKIKMLEYRQKRLQMEPLKLNN MPPSSENLESLEFRRVVCRGVFDDGRSIYVGPRSRSISGVTENGYYVITPLVPIANNA ESVQAPVLVNRGWVPRSWRDKSFEVPQEREKSSSIEAVPAQQSEQSWWWQFWSKKPKV VEDQAPAITSIEVIGVVRGSEKPSIFVPANDPNSRQWFYVDVPAIAVASGLPEDSLLI EDINENVNPSNPYPVPKDVNTLIRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLKQKK SRR" CDS complement(join(7345208..7345277,7346677..7346960, 7347048..7347222,7348660..7348898,7349910..7350010, 7350092..7350236)) /locus_tag="TCM_012907" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Surfeit locus 1 cytochrome c oxidase biogenesis protein isoform 1" /protein_id="EOY21381.1" /db_xref="Phytozome:POPTR_0012s04250.1" /db_xref="TAIR:AT3G17910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SE51" /translation="MASFSKTLTRLRPAGALYSFSNQLLPPKYWVPPASFSTAAAVSS SQSHDQEKGSTWSRWFLFLPGAITFGLGTWQIFRRQDKIKMLEYRQKRLQMEPLKLNN MPPSSENLESLEFRRVVCRGVFDDGRSIYVGPRSRSISGVTENGYYVITPLVPIANNA ESVQAPVLVNRGWVPRSWRDKSFEVPQEREKSSSIEAVPAQQSEQSWWWQFWSKKPKV VEDQAPAITSIEVIGVVRGSEKPSIFVPANDPNSRQWFYVDVPAIAVASGLPEDSLLI EDINENVNPSNPYPVPKDVNTLIRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLKQKK SRR" CDS complement(join(7345208..7345277,7346677..7346960, 7347048..7347222,7348660..7348898,7349910..7350010, 7350092..7350236)) /locus_tag="TCM_012907" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Surfeit locus 1 cytochrome c oxidase biogenesis protein isoform 1" /protein_id="EOY21383.1" /db_xref="Phytozome:POPTR_0012s04250.1" /db_xref="TAIR:AT3G17910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SE51" /translation="MASFSKTLTRLRPAGALYSFSNQLLPPKYWVPPASFSTAAAVSS SQSHDQEKGSTWSRWFLFLPGAITFGLGTWQIFRRQDKIKMLEYRQKRLQMEPLKLNN MPPSSENLESLEFRRVVCRGVFDDGRSIYVGPRSRSISGVTENGYYVITPLVPIANNA ESVQAPVLVNRGWVPRSWRDKSFEVPQEREKSSSIEAVPAQQSEQSWWWQFWSKKPKV VEDQAPAITSIEVIGVVRGSEKPSIFVPANDPNSRQWFYVDVPAIAVASGLPEDSLLI EDINENVNPSNPYPVPKDVNTLIRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLKQKK SRR" CDS complement(join(7345208..7345277,7346677..7346960, 7347048..7347222,7348660..7348898,7349920..7349982)) /locus_tag="TCM_012907" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Surfeit locus 1 cytochrome c oxidase biogenesis protein isoform 4" /protein_id="EOY21382.1" /db_xref="Phytozome:POPTR_0012s04250.1" /db_xref="TAIR:AT3G17910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SE51" /translation="MVSFPSWSYHFRPWNLADFQKIKMLEYRQKRLQMEPLKLNNMPP SSENLESLEFRRVVCRGVFDDGRSIYVGPRSRSISGVTENGYYVITPLVPIANNAESV QAPVLVNRGWVPRSWRDKSFEVPQEREKSSSIEAVPAQQSEQSWWWQFWSKKPKVVED QAPAITSIEVIGVVRGSEKPSIFVPANDPNSRQWFYVDVPAIAVASGLPEDSLLIEDI NENVNPSNPYPVPKDVNTLIRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLKQKKSRR " CDS complement(join(7345208..7345277,7346677..7346960, 7347048..7347222,7348660..7348898,7349495..7349497)) /locus_tag="TCM_012907" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Surfeit locus 1 cytochrome c oxidase biogenesis protein isoform 6" /protein_id="EOY21384.1" /db_xref="Phytozome:POPTR_0012s04250.1" /db_xref="TAIR:AT3G17910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SE51" /translation="MIKMLEYRQKRLQMEPLKLNNMPPSSENLESLEFRRVVCRGVFD DGRSIYVGPRSRSISGVTENGYYVITPLVPIANNAESVQAPVLVNRGWVPRSWRDKSF EVPQEREKSSSIEAVPAQQSEQSWWWQFWSKKPKVVEDQAPAITSIEVIGVVRGSEKP SIFVPANDPNSRQWFYVDVPAIAVASGLPEDSLLIEDINENVNPSNPYPVPKDVNTLI RSSVMPQDHLNYTLTWYSLSAAVTFMAFKRLKQKKSRR" mobile_element 7357390..7358464 /note="source:CACAO_M_E12716_F12_scaffold_3 1 1075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7367785..7368772 /note="source:scaffold_5_CACTA_0611 11374 12363" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7368765..7372456 /note="source:scaffold_5_CACTA_0613 7211 10867" /mobile_element_type="transposon:TIR/CACTA" gene complement(7373313..7375067) /locus_tag="TCM_012909" /note="dbxref CacaoGD:Thecc1EG012909" mRNA complement(join(7373313..7373664,7373865..7373915, 7374569..7375067)) /locus_tag="TCM_012909" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene09361" /inference="similar to AA sequence:frave:gene09361" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3214t1" CDS complement(join(7373540..7373664,7373865..7373915, 7374569..7374977)) /locus_tag="TCM_012909" /note="dbxref frave:gene09361" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative" /protein_id="EOY21385.1" /db_xref="TAIR:AT1G18280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LE56" /translation="MDSSKFFSIILFFFLSWALQGFSNDTQDLTRGLDSLAKGLTGIS PQGPQTRVAAAADADAAPCLQKLIPCQPFMHSPSPPATCCSPLTDVFTHDSQCLCKVF NNPEILKGFNLTLDEAMKLPKACGIDVDVSVCKKATAPSASTTNPSPPSNSGSSPGSP SDSSKSSSNGAVRITHTAAFWFIASVAALMFSAV" gene complement(7378642..7379483) /locus_tag="TCM_012910" /note="dbxref CacaoGD:Thecc1EG012910" mRNA complement(7378642..7379483) /locus_tag="TCM_012910" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.68 coverage" CDS complement(7378782..7378985) /locus_tag="TCM_012910" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21386.1" /translation="MGFLEEKSIGGWIDPFVGVGPVKSCWLKVVLGWGGKREIGKGLE SLGKRRKRDKGEMGEKTRLGILI" mobile_element complement(7379746..7380362) /note="source:CACAO_M_S_E1495_F60_scaffold_1 11154 11734" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7382938..7386289 /locus_tag="TCM_012911" /note="dbxref CacaoGD:Thecc1EG012911" mRNA join(7382938..7383705,7383777..7383956,7384033..7384301, 7384480..7386289) /locus_tag="TCM_012911" /product="STR" /inference="alignment:exonerate- protein:2:ricco:29653.m000293" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000922t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04240.1" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS join(7383340..7383705,7383777..7383956,7384033..7384301, 7384480..7386118) /locus_tag="TCM_012911" /note="paralog of Thecc1EG000922t1" /codon_start=1 /product="STR" /protein_id="EOY21387.1" /db_xref="Phytozome:POPTR_0012s04240.1" /db_xref="TAIR:AT3G55090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D3GE74" /translation="MGKPGRNAVNRSLESLLDMDKSVAAAGKNNRVPPVPVRKTIPGH GLEFSNLSYSVMKKQKKDGVWIKKEAYLLNDISGQAMRGEIMAIMGPSGAGKSTFLDA LAGRIAQGSLEGSVRIDGKPVTASYMKMISSYVLQDDQLFPMLTVHETFMFAAEVRLP PSISRAEKKKRVTELLDQLGLESAAHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLL FLDEPTSGLDSTSAYSVVEKVKEIARGGSIVLMTIHQPSYRIQLLLDRITVLARGRLV YMGSLASLPAHLSGFGRPVPDGENSLEYLLDVIKEYDESTVGLDPIVLYQRDGIKPDQ AARTPVPKTPRTPYMKTPGSRHAISLHSHAFSIGHGTSRSESGQFDYADDDEEDEDEQ DYSLERKAAQRSQTPMSMQSGVYNPRLASHFYKDFSVWVYRGVTGTPRRAPSWTPART PGQTPAKTPSSGARSYVSGRYPTPQQPPSRHKAPVVLSPSLDLYALSFEEFDMEEEVL DEPEHGPKFANPWLREIAVLSWRTALNVVRTPELFLSREIVLTVMAIILSSLFRNLSH YDFQTVNRLLNFYIFAICLVFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVISSLI VYLPFFAIQAFTFAAITKYWLDLKSSLLNFWLILYASLITTNAYVMLVSALVPSYITG YAVVIATTALFFLTCGFFLKGSKIPIGWRWLHYISAIKYPFEALLVNEFKDKDICYSG NPSDLSPGPLGELKLSDLHESNLGLKNCIMIGEDVLSSMGIKLENLWYDILILLAWGV LYRLFFYLVLRFYSKNERK" gene complement(7387453..7394577) /locus_tag="TCM_012912" /note="dbxref CacaoGD:Thecc1EG012912" mRNA complement(join(7387453..7387890,7388450..7388612, 7388699..7388798,7391945..7391975,7392486..7392602, 7392689..7392829,7392917..7392981,7393084..7393159, 7393250..7393342,7393457..7393609,7393955..7393988, 7394074..7394192,7394310..7394467)) /locus_tag="TCM_012912" /product="Tetraticopeptide domain-containing thioredoxin isoform 2" /inference="alignment:exonerate- protein:2:ricco:29653.m000292" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016053t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s04870.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc225t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc220t4_C2" mRNA complement(join(7387504..7387890,7388450..7388798, 7391945..7391975,7392486..7392602,7392689..7392829, 7392917..7392981,7393084..7393164,7393255..7393342, 7393457..7393609,7393955..7393988,7394074..7394192, 7394310..7394577)) /locus_tag="TCM_012912" /product="Tetratricoredoxin isoform 1" /inference="alignment:exonerate- protein:2:ricco:29653.m000292" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016053t2" /inference="similar to AA sequence:ricco:29653.m000292" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc220t4_C2" mRNA complement(join(7388214..7388798,7391945..7391975, 7392486..7392602,7392689..7392829,7392917..7392981, 7393084..7393159,7393250..7393342,7393457..7393609, 7393955..7393988,7394074..7394192,7394310..7394577)) /locus_tag="TCM_012912" /product="Tetratricoredoxin isoform 4" /inference="alignment:exonerate- protein:2:ricco:29653.m000292" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016053t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s04870.3" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b012471t1a4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc220t4_C2" mRNA complement(join(7388214..7388798,7391945..7391975, 7392486..7392602,7392689..7392829,7392917..7392981, 7393084..7393164,7393255..7393342,7393457..7393609, 7393955..7394192,7394310..7394577)) /locus_tag="TCM_012912" /product="Tetratricoredoxin isoform 5" /inference="alignment:exonerate- protein:2:ricco:29653.m000292" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016053t2" /inference="similar to AA sequence:ricco:29653.m000292" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b012471t1a3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc220t4_C2" CDS complement(join(7388470..7388798,7391945..7391975, 7392486..7392602,7392689..7392829,7392917..7392981, 7393084..7393164,7393255..7393342,7393457..7393609, 7393955..7393988,7394074..7394189)) /locus_tag="TCM_012912" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29653.m000292; paralog of Thecc1EG016053t2" /codon_start=1 /product="Tetratricoredoxin isoform 1" /protein_id="EOY21388.1" /db_xref="TAIR:AT3G17880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZH4" /translation="MVMDASKLAELKLFVDQCKSNPSIVHNPSLSFFKSYLQSLGARI PPDTQTDKGGVNMAEPGQHSDSKDPNFSYEEDDDIVESDVELDNTGVVEPDNDPPQMM GDPSVEVTEDMRDAAQSEKLKASDAISEGKLDEAVNYLTEAIMLNPTYAILYATRASV FIKLSKPNAAILDADAALEINPDSAKGYKVRGMARAMLGRWEEAASDLHVASKLDYDE EIGSVLKKVEPNAHKIEEHRRKYDRLRKERELKRTERQRQQQKAEAQDQEALSAFKDG QVIGIHSTGELETKLNAATRTSRLVILYFTATWCGPCRFISPLYTSLAAKYVKVVFLK VDIDEARDVAGCWNISSVPSFFFVRNGKEVDKVVGADKSLLERKIAQYAG" CDS complement(join(7388470..7388798,7391945..7391975, 7392486..7392602,7392689..7392829,7392917..7392981, 7393084..7393159,7393250..7393342,7393457..7393609, 7393955..7393988,7394074..7394189)) /locus_tag="TCM_012912" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG016053t2" /codon_start=1 /product="Tetratricoredoxin isoform 4" /protein_id="EOY21391.1" /db_xref="Phytozome:POPTR_0015s04870.3" /db_xref="TAIR:AT3G17880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZH4" /translation="MVMDASKLAELKLFVDQCKSNPSIVHNPSLSFFKSYLQSLGARI PPDTQTDKGGVNMAEPGQHSDSKDPNFSYEEDDDIVESDVELDNTGVVEPDNDPPQMM GDPSVEVTEDMRDAAQSEKLKASDAISEGMLDEAVNYLTEAIMLNPTYAILYATRASV FIKLSKPNAAILDADAALEINPDSAKGYKVRGMARAMLGRWEEAASDLHVASKLDYDE EIGSVLKKVEPNAHKIEEHRRKYDRLRKERELKRTERQRQQQKAEAQDQEALSAFKDG QVIGIHSTGELETKLNAATRTSRLVILYFTATWCGPCRFISPLYTSLAAKYVKVVFLK VDIDEARDVAGCWNISSVPSFFFVRNGKEVDKVVGADKSLLERKIAQYAG" CDS complement(join(7388470..7388798,7391945..7391975, 7392486..7392602,7392689..7392829,7392917..7392981, 7393084..7393164,7393255..7393342,7393457..7393591)) /locus_tag="TCM_012912" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29653.m000292; paralog of Thecc1EG016053t2" /codon_start=1 /product="Tetratricoredoxin isoform 5" /protein_id="EOY21392.1" /db_xref="TAIR:AT3G17880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZH4" /translation="MAEPGQHSDSKDPNFSYEEDDDIVESDVELDNTGVVEPDNDPPQ MMGDPSVEVTEDMRDAAQSEKLKASDAISEGKLDEAVNYLTEAIMLNPTYAILYATRA SVFIKLSKPNAAILDADAALEINPDSAKGYKVRGMARAMLGRWEEAASDLHVASKLDY DEEIGSVLKKVEPNAHKIEEHRRKYDRLRKERELKRTERQRQQQKAEAQDQEALSAFK DGQVIGIHSTGELETKLNAATRTSRLVILYFTATWCGPCRFISPLYTSLAAKYVKVVF LKVDIDEARDVAGCWNISSVPSFFFVRNGKEVDKVVGADKSLLERKIAQYAG" mRNA complement(join(<7388584..7388798,7391945..7391975, 7392486..7392602,7392689..7392829,7392917..7392924, 7393084..7393164,7393255..7393342,7393457..7393609, 7393955..7393988,7394074..7394333)) /locus_tag="TCM_012912" /product="Tetraticopeptide domain-containing thioredoxin isoform 6" /inference="alignment:exonerate- protein:2:ricco:29653.m000292" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016053t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s04870.3" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc220t1_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc220t4_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc230t4_C2" mRNA complement(join(7388584..7388612,7388699..7388798, 7391945..7391975,7392486..7392602,7392689..7392829, 7392917..7392981,7393084..7393164,7393255..7393342, 7393457..7393609,7393955..7393988,7394074..7394333)) /locus_tag="TCM_012912" /product="Tetraticopeptide domain-containing thioredoxin isoform 3" /inference="alignment:exonerate- protein:2:ricco:29653.m000292" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016053t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s04870.3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc220t4_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc220t4_C2" CDS complement(join(<7388584..7388798,7391945..7391975, 7392486..7392602,7392689..7392829,7392917..7392924, 7393084..7393164,7393255..7393342,7393457..7393609, 7393955..7393988,7394074..7394189)) /locus_tag="TCM_012912" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG016053t2" /codon_start=1 /product="Tetraticopeptide domain-containing thioredoxin isoform 6" /protein_id="EOY21393.1" /db_xref="Phytozome:POPTR_0015s04870.3" /db_xref="TAIR:AT3G17880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZH4" /translation="MVMDASKLAELKLFVDQCKSNPSIVHNPSLSFFKSYLQSLGARI PPDTQTDKGGVNMAEPGQHSDSKDPNFSYEEDDDIVESDVELDNTGVVEPDNDPPQMM GDPSVEVTEDMRDAAQSEKLKASDAISEGKLDEAVNYLTEAIMLNPTYAILYATRALE INPDSAKGYKVRGMARAMLGRWEEAASDLHVASKLDYDEEIGSVLKKVEPNAHKIEEH RRKYDRLRKERELKRTERQRQQQKAEAQDQEALSAFKDGQVIGIHSTGELETKLNAAT RTSRLVILYFTATWCGPCRFISPLYTSLAAKYVKVVFLKVDIDEARDVAGCW" mRNA complement(join(<7388588..7388798,7391945..7391975, 7392486..7392602,7392689..7392829,7392917..7392981, 7393084..7393159,7393250..7393342,7393457..7393609, 7393955..7394192,7394310..7394467)) /locus_tag="TCM_012912" /product="Tetratricoredoxin isoform 7" /inference="alignment:exonerate- protein:2:ricco:29653.m000292" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016053t2" /inference="similar to AA sequence:ricco:29653.m000292" /note="transcript variant 7; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc225t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc220t4_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc230t4_C2" CDS complement(join(<7388590..7388798,7391945..7391975, 7392486..7392602,7392689..7392829,7392917..7392981, 7393084..7393159,7393250..7393342,7393457..7393591)) /locus_tag="TCM_012912" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29653.m000292; paralog of Thecc1EG016053t2" /codon_start=1 /product="Tetratricoredoxin isoform 7" /protein_id="EOY21394.1" /db_xref="TAIR:AT3G17880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZH4" /translation="MAEPGQHSDSKDPNFSYEEDDDIVESDVELDNTGVVEPDNDPPQ MMGDPSVEVTEDMRDAAQSEKLKASDAISEGMLDEAVNYLTEAIMLNPTYAILYATRA SVFIKLSKPNAAILDADAALEINPDSAKGYKVRGMARAMLGRWEEAASDLHVASKLDY DEEIGSVLKKVEPNAHKIEEHRRKYDRLRKERELKRTERQRQQQKAEAQDQEALSAFK DGQVIGIHSTGELETKLNAATRTSRLVILYFTATWCGPCRFISPLYTSLAAKYVKVVF LKVDIDEARDVAG" CDS complement(join(7388612,7388699..7388798,7391945..7391975, 7392486..7392602,7392689..7392829,7392917..7392981, 7393084..7393164,7393255..7393342,7393457..7393609, 7393955..7393988,7394074..7394189)) /locus_tag="TCM_012912" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG016053t2" /codon_start=1 /product="Tetraticopeptide domain-containing thioredoxin isoform 3" /protein_id="EOY21390.1" /db_xref="Phytozome:POPTR_0015s04870.3" /db_xref="TAIR:AT3G17880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZH4" /translation="MVMDASKLAELKLFVDQCKSNPSIVHNPSLSFFKSYLQSLGARI PPDTQTDKGGVNMAEPGQHSDSKDPNFSYEEDDDIVESDVELDNTGVVEPDNDPPQMM GDPSVEVTEDMRDAAQSEKLKASDAISEGKLDEAVNYLTEAIMLNPTYAILYATRASV FIKLSKPNAAILDADAALEINPDSAKGYKVRGMARAMLGRWEEAASDLHVASKLDYDE EIGSVLKKVEPNAHKIEEHRRKYDRLRKERELKRTERQRQQQKAEAQDQEALSAFKDG QVIGIHSTGELETKLNAATRTSRLVILYFTAT" CDS complement(join(7388612,7388699..7388798,7391945..7391975, 7392486..7392602,7392689..7392829,7392917..7392981, 7393084..7393159,7393250..7393342,7393457..7393609, 7393955..7393988,7394074..7394189)) /locus_tag="TCM_012912" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016053t2" /codon_start=1 /product="Tetraticopeptide domain-containing thioredoxin isoform 2" /protein_id="EOY21389.1" /db_xref="Phytozome:POPTR_0015s04870.3" /db_xref="TAIR:AT3G17880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZH4" /translation="MVMDASKLAELKLFVDQCKSNPSIVHNPSLSFFKSYLQSLGARI PPDTQTDKGGVNMAEPGQHSDSKDPNFSYEEDDDIVESDVELDNTGVVEPDNDPPQMM GDPSVEVTEDMRDAAQSEKLKASDAISEGMLDEAVNYLTEAIMLNPTYAILYATRASV FIKLSKPNAAILDADAALEINPDSAKGYKVRGMARAMLGRWEEAASDLHVASKLDYDE EIGSVLKKVEPNAHKIEEHRRKYDRLRKERELKRTERQRQQQKAEAQDQEALSAFKDG QVIGIHSTGELETKLNAATRTSRLVILYFTAT" mobile_element complement(7396023..7396193) /note="source:CACAO_PIF_E119_scaffold_3 4502 4673" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 7397899..7403179 /locus_tag="TCM_012913" /note="dbxref CacaoGD:Thecc1EG012913" mRNA join(7397899..7398470,7400257..7400447,7400689..7400978, 7401104..7401194,7401292..7401625,7401739..7401799, 7402566..7402712,7402940..7403179) /locus_tag="TCM_012913" /product="Jasmonate-zim-domain protein 3, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04220.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07073t00001" mRNA join(7398223..7398470,7400257..7400447,7400689..7400978, 7401104..7401194,7401292..7401625,7401735..7401799, 7402566..7402948) /locus_tag="TCM_012913" /product="Jasmonate-zim-domain protein 3, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400055226.2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04220.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2274t2; inference alignment:Newbler:10:TSA:cgbaB_g07073t00001" CDS join(7398386..7398470,7400257..7400447,7400689..7400978, 7401104..7401194,7401292..7401625,7401739..7401799, 7402566..7402674) /locus_tag="TCM_012913" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Jasmonate-zim-domain protein 3, putative isoform 1" /protein_id="EOY21395.1" /db_xref="Phytozome:POPTR_0012s04220.1" /db_xref="TAIR:AT3G17860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2C6" /translation="MERDFMGLGSKHAPVTVKEEACEGPKDSVFLRGSGMQLSFSNKV SAIPQFLSFKAAQEDRLRKTAHDPLVSSGFMAKPTADSNPRPYSGLTQKQRGNHYTVT TFGLQQFDGHQPHCSQEVRLFPVSSEPNQTIAVSMSTPLLQSHLVSTGQNTIGNTVTP QPFAGVPIMAPPVSVVPPSSSIIGTTELRNAAKSSQAPSQLTIFYAGSVCVYDDVSPE KAQAIMLLAGNGSSAAQSKSTPVTQAQAPMPRPCAADGFVGNNSSTMSPCSGFPGPIS VTSHVSLQPGEGSSGTNDLTAVTRVVAITSSNNQPERPRVVNSVGSAATSLIPAVAVP QARKASLARFLEKRKERVTSTSPYNISKKSPGSDDISFSVTSAGSSPRPAVN" CDS join(7398386..7398470,7400257..7400447,7400689..7400978, 7401104..7401194,7401292..7401625,7401735..7401760) /locus_tag="TCM_012913" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Jasmonate-zim-domain protein 3, putative isoform 2" /protein_id="EOY21396.1" /db_xref="Phytozome:POPTR_0012s04220.1" /db_xref="TAIR:AT3G17860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2C6" /translation="MERDFMGLGSKHAPVTVKEEACEGPKDSVFLRGSGMQLSFSNKV SAIPQFLSFKAAQEDRLRKTAHDPLVSSGFMAKPTADSNPRPYSGLTQKQRGNHYTVT TFGLQQFDGHQPHCSQEVRLFPVSSEPNQTIAVSMSTPLLQSHLVSTGQNTIGNTVTP QPFAGVPIMAPPVSVVPPSSSIIGTTELRNAAKSSQAPSQLTIFYAGSVCVYDDVSPE KAQAIMLLAGNGSSAAQSKSTPVTQAQAPMPRPCAADGFVGNNSSTMSPCSGFPGPIS VTSHVSLQPGEGSSGTNDLTAVTRVVAITSSNNQPERPRVVNSVGSAATSLIPAGSSC ASGS" mRNA join(7398819..7398928,7400257..7400447,7400689..7400978, 7401104..7401194,7401292..7401625,7401739..7401799, 7402566..>7402589) /locus_tag="TCM_012913" /product="Jasmonate-zim-domain protein 3, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400055226.2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011017t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04220.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1327t2; inference alignment:Newbler:10:TSA:cgbaB_g07073t00001" mRNA join(7400020..7400084,7400257..7400447,7400689..7400978, 7401104..7401194,7401292..7401625,7401742..7401799, 7402566..>7402593) /locus_tag="TCM_012913" /product="Jasmonate-zim-domain protein 3, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400055226.2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011017t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04220.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1879t5; inference alignment:Newbler:10:TSA:cgbaB_g07073t00001" mRNA join(7400024..7400084,7400257..7400447,7400689..7400978, 7401104..7401194,7401292..7401625,7401739..7401799, 7402566..>7402589) /locus_tag="TCM_012913" /product="Jasmonate-zim-domain protein 3, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400055226.2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011017t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s04220.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1327t3; alternateUTRof:Thecc1EG012913t3; inference alignment:Newbler:10:TSA:cgbaB_g07073t00001" CDS join(7400277..7400447,7400689..7400978,7401104..7401194, 7401292..7401625,7401742..7401799,7402566..>7402593) /locus_tag="TCM_012913" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG011017t1" /codon_start=1 /product="Jasmonate-zim-domain protein 3, putative isoform 5" /protein_id="EOY21399.1" /db_xref="Phytozome:POPTR_0012s04220.1" /db_xref="TAIR:AT3G17860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2C6" /translation="MQLSFSNKVSAIPQFLSFKAAQEDRLRKTAHDPLVSSGFMAKPT ADSNPRPYSGLTQKQRGNHYTVTTFGLQQFDGHQPHCSQEVRLFPVSSEPNQTIAVSM STPLLQSHLVSTGQNTIGNTVTPQPFAGVPIMAPPVSVVPPSSSIIGTTELRNAAKSS QAPSQLTIFYAGSVCVYDDVSPEKAQAIMLLAGNGSSAAQSKSTPVTQAQAPMPRPCA ADGFVGNNSSTMSPCSGFPGPISVTSHVSLQPGEGSSGTNDLTAVTRVVAITSSNNQP ERPRVVNSVGSAATSLIPAAVPQARKASLARFLEKRKERVTSTSPYNI" CDS join(7400277..7400447,7400689..7400978,7401104..7401194, 7401292..7401625,7401739..7401799,7402566..>7402587) /locus_tag="TCM_012913" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG011017t1" /codon_start=1 /product="Jasmonate-zim-domain protein 3, putative isoform 3" /protein_id="EOY21397.1" /db_xref="Phytozome:POPTR_0012s04220.1" /db_xref="TAIR:AT3G17860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2C6" /translation="MQLSFSNKVSAIPQFLSFKAAQEDRLRKTAHDPLVSSGFMAKPT ADSNPRPYSGLTQKQRGNHYTVTTFGLQQFDGHQPHCSQEVRLFPVSSEPNQTIAVSM STPLLQSHLVSTGQNTIGNTVTPQPFAGVPIMAPPVSVVPPSSSIIGTTELRNAAKSS QAPSQLTIFYAGSVCVYDDVSPEKAQAIMLLAGNGSSAAQSKSTPVTQAQAPMPRPCA ADGFVGNNSSTMSPCSGFPGPISVTSHVSLQPGEGSSGTNDLTAVTRVVAITSSNNQP ERPRVVNSVGSAATSLIPAVAVPQARKASLARFLEKRKERVTSTSPY" CDS join(7400277..7400447,7400689..7400978,7401104..7401194, 7401292..7401625,7401739..7401799,7402566..>7402587) /locus_tag="TCM_012913" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG011017t1" /codon_start=1 /product="Jasmonate-zim-domain protein 3, putative isoform 3" /protein_id="EOY21398.1" /db_xref="Phytozome:POPTR_0012s04220.1" /db_xref="TAIR:AT3G17860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2C6" /translation="MQLSFSNKVSAIPQFLSFKAAQEDRLRKTAHDPLVSSGFMAKPT ADSNPRPYSGLTQKQRGNHYTVTTFGLQQFDGHQPHCSQEVRLFPVSSEPNQTIAVSM STPLLQSHLVSTGQNTIGNTVTPQPFAGVPIMAPPVSVVPPSSSIIGTTELRNAAKSS QAPSQLTIFYAGSVCVYDDVSPEKAQAIMLLAGNGSSAAQSKSTPVTQAQAPMPRPCA ADGFVGNNSSTMSPCSGFPGPISVTSHVSLQPGEGSSGTNDLTAVTRVVAITSSNNQP ERPRVVNSVGSAATSLIPAVAVPQARKASLARFLEKRKERVTSTSPY" gene 7406152..7409170 /locus_tag="TCM_012914" /note="dbxref CacaoGD:Thecc1EG012914" mRNA join(7406152..7406419,7408889..7409170) /locus_tag="TCM_012914" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS join(7406193..7406419,7408889..7409036) /locus_tag="TCM_012914" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21400.1" /translation="MDVTTCHTLGAMEKNELVVVKRMCFEKLMDEESKKSLFCTSLVH NLLLCKIDELVPLKVSYGLPKAIPRRVSPNVRKVTCFIESCVQQIGSPRAEGYGQIKS LFVLFMEPTLEHASNTLDQDGD" mobile_element 7407286..7407343 /note="source:CACAO_Mutator_E592_scaffold_3 12879 12932" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7407394..7407517) /note="source:CACAO_Mutator_E1320_scaffold_6 6532 6670" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7410762..7412250 /note="source:INTACT622F_F362_scaffold_4-int 9788 11255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7412789..7415289 /note="source:CACAO_M_S_E16721_F36_scaffold_2 5246 7803" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7415280..7417622) /note="source:INTACT19_F111_scaffold_6-int 6807 9152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7417623..7420583 /note="source:CACAO_M_E12718_F33_scaffold_3 1 2961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7420584..7426152) /note="source:INTACT19_F111_scaffold_6-int 1199 6811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7425756..7426238 /note="source:CACAO_M_E49205_F4_scaffold_6 9871 10370" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7427057..7427402) /note="source:INTACT19_F111_scaffold_6-int 1 357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7427412..7427689) /note="source:CACAO_Mutator_E1320_scaffold_6 7784 8072" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7427695..7427744) /note="source:CACAO_Mutator_E1320_scaffold_6 7317 7366" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7428098..7429103) /note="source:scaffold_8_CACTA_0867 14236 15223" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7428548..7430449) /note="source:CACAO_Mutator_E1018_scaffold_5 2820 4793" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7430450..7431636 /note="source:CACAO_M_S_E17596_F13_scaffold_3 1 1187" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7431637..7433804) /note="source:scaffold_8_CACTA_0867 11200 13359" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7434120..7434308) /note="source:CACAO_on_S_E46_scaffold_2 1283 1446" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7434300..7434443) /note="source:CACAO_on_S_E46_scaffold_2 793 947" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7435247..7438750) /note="source:scaffold_8_CACTA_0867 4176 7801" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7438753..7441209 /note="source:CACAO_hAT_E1198_scaffold_3 1 2457" /mobile_element_type="transposon:TIR/hAT" gene 7448616..7466906 /locus_tag="TCM_012919" /note="dbxref CacaoGD:Thecc1EG012919" mRNA join(7448616..7448907,7451449..7452563,7456269..7456333, 7456460..7456642,7456717..7458090,7458605..7458777, 7458966..7459212,7460886..7460978,7461058..7461198, 7461305..7461397,7461896..7462100,7462421..7462506, 7463611..7463699,7464664..7464715,7464839..7464895, 7464991..7465164,7465254..7465331,7465853..7466036, 7466129..7466722,7466822..7466906) /locus_tag="TCM_012919" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09355" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014957t1" /inference="similar to AA sequence:ricco:27651.m000097" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc119t12" mobile_element complement(7448831..7450871) /note="source:CACAO_Mutator_E592_scaffold_3 4028 6097" /mobile_element_type="transposon:TIR/Mutator" mRNA join(7451608..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462126,7462421..7462506,7463611..7463699, 7464664..7464715,7464839..7464895,7464991..7465164, 7465254..7465331,7465853..7466036,7466129..7466596) /locus_tag="TCM_012919" /product="Kinase superfamily protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene09355" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014957t1" /inference="similar to AA sequence:ricco:27651.m000097" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc119t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc119t12" mRNA join(7451608..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464715,7464839..7464895,7464991..7465164, 7465254..7465331,7465853..7466596) /locus_tag="TCM_012919" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09355" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014957t1" /inference="similar to AA sequence:ricco:27651.m000097" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc119t7; alternateUTRof:Thecc1EG012919t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc119t12" mRNA join(7451608..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464715,7464839..7464895,7464991..7465164, 7465254..7465331,7465853..7466036,7466129..7466169, 7466230..7466596) /locus_tag="TCM_012919" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09355" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014957t1" /inference="similar to AA sequence:ricco:27651.m000097" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc119t4; alternateUTRof:Thecc1EG012919t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc119t12" mRNA join(7451608..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464715,7464839..7464895,7464991..7465161, 7465254..7465331,7465853..7466036,7466129..7466169, 7466230..7466596) /locus_tag="TCM_012919" /product="Kinase superfamily protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene09355" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014957t1" /inference="similar to AA sequence:ricco:27651.m000097" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc73t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc119t12" mRNA join(7451628..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464719,7464839..7464895,7464991..7465164, 7465254..7465331,7465853..7466036,7466129..7466646) /locus_tag="TCM_012919" /product="Kinase superfamily protein isoform 6" /inference="alignment:exonerate-protein:2:frave:gene09355" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014957t1" /inference="similar to AA sequence:ricco:27651.m000097" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2408t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc119t12" mRNA join(7451628..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464718,7464839..7464895,7464991..7465161, 7465254..7465331,7465853..7466036,7466129..7466203) /locus_tag="TCM_012919" /product="Kinase superfamily protein isoform 5" /inference="alignment:exonerate-protein:2:frave:gene09355" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014957t1" /inference="similar to AA sequence:ricco:27651.m000097" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2408t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc119t12" CDS join(7451876..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464718,7464839..7464895,7464991..7465161, 7465254..7465331,7465853..7465936) /locus_tag="TCM_012919" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:27651.m000097; paralog of Thecc1EG014957t1" /codon_start=1 /product="Kinase superfamily protein isoform 5" /protein_id="EOY21405.1" /db_xref="TAIR:AT3G17850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2C4" /translation="MVFKNKLFFSSSKKSDSDGSNSPRSTSNSPIRSDKKKPKASTSK PDSQQIPNSTSPFSPVACKQTQVKDGLRRLNLKAKEPQPQTPAAKPSSSTSKKPDAKD GPSSVSPILASSLGLNRIKTRSGPLPQESFFSFRGEKSAAASVLGASNLSRPGGSSSV GGDGSSGKSGSGKKDGLNQRLLQESSLDNASNSDSMSTGSGGGGWHSREQSPSVQGKS RLQNGESSSEAGQNESSWGHSGGLKSSDFCTPETSYDCENPKESESPRFQAILRVTSG PRKRFPADIKSFSHELNSKGVRPFPLWKPRRLNNLEEILIAIRAKFDKAKEEVNADLA IFAADLVGILEKNAESHPEWQETIEDLLVLARSCAMTPPGEFWLQCEGIVQELDDKRQ ELPPGTLKQLYTKMLFILTRCTRLLQFHKESGLAEDEPVIQLRQSRILHPVDKRTSSG VLREAKSLSASKASKSSKAASSKKAYSQEQHALDWKRDHVVLPGGLIAPTDDTPKNLE SPASRDRIASWKKLPSPAKKGPKEVIASKEQNDNKIETLKRRGASDVDLAAMKLQELP PAKESQEHSSKHQHKVSWGYWGDQPNVSEESSIICRICEEEVATSNVEDHSRICAVAD RCDQKGLSVDERLVRIAETLEKMTDSFANKDIQHVGSPDGAKVSNSSVTEESDVLSPK LSDWSRRGSEDMLDCFPEADNSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTP RSPLLTPRTSQIDLLLSGKGAFSEQEDLPQMNELADIARCVANTPLVDDHSMPFLLSF LEELRLVIDRRKFDALTVETFGARIEKLIREKYLQLCELVDDEKVDITSTVIDEDAPL EDDVVRSLRTSPNHSSRDRTTIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKK ADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRN LGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGL INSTDDLSGPAVSGTSLLDDEQPQLSASEHQQERRKKRSAVGTPDYLAPEILLGTGHG ATADWWSVGVILFELIVGIPPFNAEHPQTIFDNILNRKIPWPRVSEEMSLEAKDLIDR LLTEDPHQRLGARGASEVVKQHVFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYS WNTSDDHAYPGSEFDDSSDADSLSGSSSCLSNRQDEGDECGGLAEFESGSSVNYSFSN FSFKNLSQLASINYDLLSKGWKDDHPANSNA" CDS join(7451876..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464715,7464839..7464895,7464991..7465164, 7465254..7465331,7465853..7465936) /locus_tag="TCM_012919" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27651.m000097; paralog of Thecc1EG014957t1" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY21401.1" /db_xref="TAIR:AT3G17850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2C4" /translation="MVFKNKLFFSSSKKSDSDGSNSPRSTSNSPIRSDKKKPKASTSK PDSQQIPNSTSPFSPVACKQTQVKDGLRRLNLKAKEPQPQTPAAKPSSSTSKKPDAKD GPSSVSPILASSLGLNRIKTRSGPLPQESFFSFRGEKSAAASVLGASNLSRPGGSSSV GGDGSSGKSGSGKKDGLNQRLLQESSLDNASNSDSMSTGSGGGGWHSREQSPSVQGKS RLQNGESSSEAGQNESSWGHSGGLKSSDFCTPETSYDCENPKESESPRFQAILRVTSG PRKRFPADIKSFSHELNSKGVRPFPLWKPRRLNNLEEILIAIRAKFDKAKEEVNADLA IFAADLVGILEKNAESHPEWQETIEDLLVLARSCAMTPPGEFWLQCEGIVQELDDKRQ ELPPGTLKQLYTKMLFILTRCTRLLQFHKESGLAEDEPVIQLRQSRILHPVDKRTSSG VLREAKSLSASKASKSSKAASSKKAYSQEQHALDWKRDHVVLPGGLIAPTDDTPKNLE SPASRDRIASWKKLPSPAKKGPKEVIASKEQNDNKIETLKRRGASDVDLAAMKLQELP PAKESQEHSSKHQHKVSWGYWGDQPNVSEESSIICRICEEEVATSNVEDHSRICAVAD RCDQKGLSVDERLVRIAETLEKMTDSFANKDIQHVGSPDGAKVSNSSVTEESDVLSPK LSDWSRRGSEDMLDCFPEADNSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTP RSPLLTPRTSQIDLLLSGKGAFSEQEDLPQMNELADIARCVANTPLVDDHSMPFLLSF LEELRLVIDRRKFDALTVETFGARIEKLIREKYLQLCELVDDEKVDITSTVIDEDAPL EDDVVRSLRTSPNHSSRDRTTIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKK ADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRN LGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGL INSTDDLSGPAVSGTSLLDDEQPQLSASEHQQERRKKRSAVGTPDYLAPEILLGTGHG ATADWWSVGVILFELIVGIPPFNAEHPQTIFDNILNRKIPWPRVSEEMSLEAKDLIDR LLTEDPHQRLGARGASEVKQHVFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSW NTSDDHAYPGSEFDDSSDADSLSGSSSCLSNRQDEVGDECGGLAEFESGSSVNYSFSN FSFKNLSQLASINYDLLSKGWKDDHPANSNA" CDS join(7451876..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464715,7464839..7464895,7464991..7465164, 7465254..7465331,7465853..7465936) /locus_tag="TCM_012919" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27651.m000097; paralog of Thecc1EG014957t1" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY21402.1" /db_xref="TAIR:AT3G17850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2C4" /translation="MVFKNKLFFSSSKKSDSDGSNSPRSTSNSPIRSDKKKPKASTSK PDSQQIPNSTSPFSPVACKQTQVKDGLRRLNLKAKEPQPQTPAAKPSSSTSKKPDAKD GPSSVSPILASSLGLNRIKTRSGPLPQESFFSFRGEKSAAASVLGASNLSRPGGSSSV GGDGSSGKSGSGKKDGLNQRLLQESSLDNASNSDSMSTGSGGGGWHSREQSPSVQGKS RLQNGESSSEAGQNESSWGHSGGLKSSDFCTPETSYDCENPKESESPRFQAILRVTSG PRKRFPADIKSFSHELNSKGVRPFPLWKPRRLNNLEEILIAIRAKFDKAKEEVNADLA IFAADLVGILEKNAESHPEWQETIEDLLVLARSCAMTPPGEFWLQCEGIVQELDDKRQ ELPPGTLKQLYTKMLFILTRCTRLLQFHKESGLAEDEPVIQLRQSRILHPVDKRTSSG VLREAKSLSASKASKSSKAASSKKAYSQEQHALDWKRDHVVLPGGLIAPTDDTPKNLE SPASRDRIASWKKLPSPAKKGPKEVIASKEQNDNKIETLKRRGASDVDLAAMKLQELP PAKESQEHSSKHQHKVSWGYWGDQPNVSEESSIICRICEEEVATSNVEDHSRICAVAD RCDQKGLSVDERLVRIAETLEKMTDSFANKDIQHVGSPDGAKVSNSSVTEESDVLSPK LSDWSRRGSEDMLDCFPEADNSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTP RSPLLTPRTSQIDLLLSGKGAFSEQEDLPQMNELADIARCVANTPLVDDHSMPFLLSF LEELRLVIDRRKFDALTVETFGARIEKLIREKYLQLCELVDDEKVDITSTVIDEDAPL EDDVVRSLRTSPNHSSRDRTTIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKK ADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRN LGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGL INSTDDLSGPAVSGTSLLDDEQPQLSASEHQQERRKKRSAVGTPDYLAPEILLGTGHG ATADWWSVGVILFELIVGIPPFNAEHPQTIFDNILNRKIPWPRVSEEMSLEAKDLIDR LLTEDPHQRLGARGASEVKQHVFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSW NTSDDHAYPGSEFDDSSDADSLSGSSSCLSNRQDEVGDECGGLAEFESGSSVNYSFSN FSFKNLSQLASINYDLLSKGWKDDHPANSNA" CDS join(7451876..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464715,7464839..7464895,7464991..7465164, 7465254..7465331,7465853..7465936) /locus_tag="TCM_012919" /note="encoded by transcript variant 9; alternatively spliced; dbxref ricco:27651.m000097; paralog of Thecc1EG014957t1" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY21409.1" /db_xref="TAIR:AT3G17850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2C4" /translation="MVFKNKLFFSSSKKSDSDGSNSPRSTSNSPIRSDKKKPKASTSK PDSQQIPNSTSPFSPVACKQTQVKDGLRRLNLKAKEPQPQTPAAKPSSSTSKKPDAKD GPSSVSPILASSLGLNRIKTRSGPLPQESFFSFRGEKSAAASVLGASNLSRPGGSSSV GGDGSSGKSGSGKKDGLNQRLLQESSLDNASNSDSMSTGSGGGGWHSREQSPSVQGKS RLQNGESSSEAGQNESSWGHSGGLKSSDFCTPETSYDCENPKESESPRFQAILRVTSG PRKRFPADIKSFSHELNSKGVRPFPLWKPRRLNNLEEILIAIRAKFDKAKEEVNADLA IFAADLVGILEKNAESHPEWQETIEDLLVLARSCAMTPPGEFWLQCEGIVQELDDKRQ ELPPGTLKQLYTKMLFILTRCTRLLQFHKESGLAEDEPVIQLRQSRILHPVDKRTSSG VLREAKSLSASKASKSSKAASSKKAYSQEQHALDWKRDHVVLPGGLIAPTDDTPKNLE SPASRDRIASWKKLPSPAKKGPKEVIASKEQNDNKIETLKRRGASDVDLAAMKLQELP PAKESQEHSSKHQHKVSWGYWGDQPNVSEESSIICRICEEEVATSNVEDHSRICAVAD RCDQKGLSVDERLVRIAETLEKMTDSFANKDIQHVGSPDGAKVSNSSVTEESDVLSPK LSDWSRRGSEDMLDCFPEADNSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTP RSPLLTPRTSQIDLLLSGKGAFSEQEDLPQMNELADIARCVANTPLVDDHSMPFLLSF LEELRLVIDRRKFDALTVETFGARIEKLIREKYLQLCELVDDEKVDITSTVIDEDAPL EDDVVRSLRTSPNHSSRDRTTIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKK ADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRN LGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGL INSTDDLSGPAVSGTSLLDDEQPQLSASEHQQERRKKRSAVGTPDYLAPEILLGTGHG ATADWWSVGVILFELIVGIPPFNAEHPQTIFDNILNRKIPWPRVSEEMSLEAKDLIDR LLTEDPHQRLGARGASEVKQHVFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSW NTSDDHAYPGSEFDDSSDADSLSGSSSCLSNRQDEVGDECGGLAEFESGSSVNYSFSN FSFKNLSQLASINYDLLSKGWKDDHPANSNA" CDS join(7451876..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464715,7464839..7464895,7464991..7465161, 7465254..7465331,7465853..7465936) /locus_tag="TCM_012919" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:27651.m000097; paralog of Thecc1EG014957t1" /codon_start=1 /product="Kinase superfamily protein isoform 3" /protein_id="EOY21403.1" /db_xref="TAIR:AT3G17850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2C4" /translation="MVFKNKLFFSSSKKSDSDGSNSPRSTSNSPIRSDKKKPKASTSK PDSQQIPNSTSPFSPVACKQTQVKDGLRRLNLKAKEPQPQTPAAKPSSSTSKKPDAKD GPSSVSPILASSLGLNRIKTRSGPLPQESFFSFRGEKSAAASVLGASNLSRPGGSSSV GGDGSSGKSGSGKKDGLNQRLLQESSLDNASNSDSMSTGSGGGGWHSREQSPSVQGKS RLQNGESSSEAGQNESSWGHSGGLKSSDFCTPETSYDCENPKESESPRFQAILRVTSG PRKRFPADIKSFSHELNSKGVRPFPLWKPRRLNNLEEILIAIRAKFDKAKEEVNADLA IFAADLVGILEKNAESHPEWQETIEDLLVLARSCAMTPPGEFWLQCEGIVQELDDKRQ ELPPGTLKQLYTKMLFILTRCTRLLQFHKESGLAEDEPVIQLRQSRILHPVDKRTSSG VLREAKSLSASKASKSSKAASSKKAYSQEQHALDWKRDHVVLPGGLIAPTDDTPKNLE SPASRDRIASWKKLPSPAKKGPKEVIASKEQNDNKIETLKRRGASDVDLAAMKLQELP PAKESQEHSSKHQHKVSWGYWGDQPNVSEESSIICRICEEEVATSNVEDHSRICAVAD RCDQKGLSVDERLVRIAETLEKMTDSFANKDIQHVGSPDGAKVSNSSVTEESDVLSPK LSDWSRRGSEDMLDCFPEADNSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTP RSPLLTPRTSQIDLLLSGKGAFSEQEDLPQMNELADIARCVANTPLVDDHSMPFLLSF LEELRLVIDRRKFDALTVETFGARIEKLIREKYLQLCELVDDEKVDITSTVIDEDAPL EDDVVRSLRTSPNHSSRDRTTIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKK ADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRN LGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGL INSTDDLSGPAVSGTSLLDDEQPQLSASEHQQERRKKRSAVGTPDYLAPEILLGTGHG ATADWWSVGVILFELIVGIPPFNAEHPQTIFDNILNRKIPWPRVSEEMSLEAKDLIDR LLTEDPHQRLGARGASEVKQHVFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSW NTSDDHAYPGSEFDDSSDADSLSGSSSCLSNRQDEGDECGGLAEFESGSSVNYSFSNF SFKNLSQLASINYDLLSKGWKDDHPANSNA" CDS join(7451876..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464719,7464839..7464895,7464991..7465025) /locus_tag="TCM_012919" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:27651.m000097; paralog of Thecc1EG014957t1" /codon_start=1 /product="Kinase superfamily protein isoform 6" /protein_id="EOY21406.1" /db_xref="TAIR:AT3G17850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2C4" /translation="MVFKNKLFFSSSKKSDSDGSNSPRSTSNSPIRSDKKKPKASTSK PDSQQIPNSTSPFSPVACKQTQVKDGLRRLNLKAKEPQPQTPAAKPSSSTSKKPDAKD GPSSVSPILASSLGLNRIKTRSGPLPQESFFSFRGEKSAAASVLGASNLSRPGGSSSV GGDGSSGKSGSGKKDGLNQRLLQESSLDNASNSDSMSTGSGGGGWHSREQSPSVQGKS RLQNGESSSEAGQNESSWGHSGGLKSSDFCTPETSYDCENPKESESPRFQAILRVTSG PRKRFPADIKSFSHELNSKGVRPFPLWKPRRLNNLEEILIAIRAKFDKAKEEVNADLA IFAADLVGILEKNAESHPEWQETIEDLLVLARSCAMTPPGEFWLQCEGIVQELDDKRQ ELPPGTLKQLYTKMLFILTRCTRLLQFHKESGLAEDEPVIQLRQSRILHPVDKRTSSG VLREAKSLSASKASKSSKAASSKKAYSQEQHALDWKRDHVVLPGGLIAPTDDTPKNLE SPASRDRIASWKKLPSPAKKGPKEVIASKEQNDNKIETLKRRGASDVDLAAMKLQELP PAKESQEHSSKHQHKVSWGYWGDQPNVSEESSIICRICEEEVATSNVEDHSRICAVAD RCDQKGLSVDERLVRIAETLEKMTDSFANKDIQHVGSPDGAKVSNSSVTEESDVLSPK LSDWSRRGSEDMLDCFPEADNSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTP RSPLLTPRTSQIDLLLSGKGAFSEQEDLPQMNELADIARCVANTPLVDDHSMPFLLSF LEELRLVIDRRKFDALTVETFGARIEKLIREKYLQLCELVDDEKVDITSTVIDEDAPL EDDVVRSLRTSPNHSSRDRTTIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKK ADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRN LGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGL INSTDDLSGPAVSGTSLLDDEQPQLSASEHQQERRKKRSAVGTPDYLAPEILLGTGHG ATADWWSVGVILFELIVGIPPFNAEHPQTIFDNILNRKIPWPRVSEEMSLEAKDLIDR LLTEDPHQRLGARGASEVSEAACILQRYQLGHPCEAKGCFCSHFRECT" CDS join(7451876..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462120) /locus_tag="TCM_012919" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:27651.m000097; paralog of Thecc1EG014957t1" /codon_start=1 /product="Kinase superfamily protein isoform 4" /protein_id="EOY21404.1" /db_xref="TAIR:AT3G17850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2C4" /translation="MVFKNKLFFSSSKKSDSDGSNSPRSTSNSPIRSDKKKPKASTSK PDSQQIPNSTSPFSPVACKQTQVKDGLRRLNLKAKEPQPQTPAAKPSSSTSKKPDAKD GPSSVSPILASSLGLNRIKTRSGPLPQESFFSFRGEKSAAASVLGASNLSRPGGSSSV GGDGSSGKSGSGKKDGLNQRLLQESSLDNASNSDSMSTGSGGGGWHSREQSPSVQGKS RLQNGESSSEAGQNESSWGHSGGLKSSDFCTPETSYDCENPKESESPRFQAILRVTSG PRKRFPADIKSFSHELNSKGVRPFPLWKPRRLNNLEEILIAIRAKFDKAKEEVNADLA IFAADLVGILEKNAESHPEWQETIEDLLVLARSCAMTPPGEFWLQCEGIVQELDDKRQ ELPPGTLKQLYTKMLFILTRCTRLLQFHKESGLAEDEPVIQLRQSRILHPVDKRTSSG VLREAKSLSASKASKSSKAASSKKAYSQEQHALDWKRDHVVLPGGLIAPTDDTPKNLE SPASRDRIASWKKLPSPAKKGPKEVIASKEQNDNKIETLKRRGASDVDLAAMKLQELP PAKESQEHSSKHQHKVSWGYWGDQPNVSEESSIICRICEEEVATSNVEDHSRICAVAD RCDQKGLSVDERLVRIAETLEKMTDSFANKDIQHVGSPDGAKVSNSSVTEESDVLSPK LSDWSRRGSEDMLDCFPEADNSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTP RSPLLTPRTSQIDLLLSGKGAFSEQEDLPQMNELADIARCVANTPLVDDHSMPFLLSF LEELRLVIDRRKFDALTVETFGARIEKLIREKYLQLCELVDDEKVDITSTVIDEDAPL EDDVVRSLRTSPNHSSRDRTTIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKK ADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRN LGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGL INSTDDLSGPAVSGTSLLDDEQPQLSASEHQQERRKKRSAVGTPDYLAPEILLGTGHG LYSPF" mRNA join(<7452535..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464715,7464839..7464895,7464991..7465331, 7465853..7466036,7466129..7466596) /locus_tag="TCM_012919" /product="Kinase superfamily protein isoform 8" /inference="alignment:exonerate-protein:2:frave:gene09355" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014957t1" /inference="similar to AA sequence:ricco:27651.m000097" /note="transcript variant 8; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc120t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc119t12" mRNA join(7452535..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464715,7464839..7464895,7464991..7465164, 7465254..7465331,7465853..7465952,7466129..7466596) /locus_tag="TCM_012919" /product="Kinase superfamily protein isoform 7" /inference="alignment:exonerate-protein:2:frave:gene09355" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014957t1" /inference="similar to AA sequence:ricco:27651.m000097" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc120t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc119t12" CDS join(<7452536..7452563,7456269..7456333,7456460..7456642, 7456717..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464715,7464839..7464895,7464991..7465173) /locus_tag="TCM_012919" /note="encoded by transcript variant 8; alternatively spliced; dbxref ricco:27651.m000097; paralog of Thecc1EG014957t1" /codon_start=1 /product="Kinase superfamily protein isoform 8" /protein_id="EOY21408.1" /db_xref="TAIR:AT3G17850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2C4" /translation="QNGESSSEAGQNESSWGHSGGLKSSDFCTPETSYDCENPKESES PRFQAILRVTSGPRKRFPADIKSFSHELNSKGVRPFPLWKPRRLNNLEEILIAIRAKF DKAKEEVNADLAIFAADLVGILEKNAESHPEWQETIEDLLVLARSCAMTPPGEFWLQC EGIVQELDDKRQELPPGTLKQLYTKMLFILTRCTRLLQFHKESGLAEDEPVIQLRQSR ILHPVDKRTSSGVLREAKSLSASKASKSSKAASSKKAYSQEQHALDWKRDHVVLPGGL IAPTDDTPKNLESPASRDRIASWKKLPSPAKKGPKEVIASKEQNDNKIETLKRRGASD VDLAAMKLQELPPAKESQEHSSKHQHKVSWGYWGDQPNVSEESSIICRICEEEVATSN VEDHSRICAVADRCDQKGLSVDERLVRIAETLEKMTDSFANKDIQHVGSPDGAKVSNS SVTEESDVLSPKLSDWSRRGSEDMLDCFPEADNSVFMDDLKGLPSMSCKTRFGPKSDQ GMTTSSAGSMTPRSPLLTPRTSQIDLLLSGKGAFSEQEDLPQMNELADIARCVANTPL VDDHSMPFLLSFLEELRLVIDRRKFDALTVETFGARIEKLIREKYLQLCELVDDEKVD ITSTVIDEDAPLEDDVVRSLRTSPNHSSRDRTTIDDFEIIKPISRGAFGRVFLAKKRT TGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEY LNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHI KLTDFGLSKVGLINSTDDLSGPAVSGTSLLDDEQPQLSASEHQQERRKKRSAVGTPDY LAPEILLGTGHGATADWWSVGVILFELIVGIPPFNAEHPQTIFDNILNRKIPWPRVSE EMSLEAKDLIDRLLTEDPHQRLGARGASEVKQHVFFKDINWDTLARQKAAFVPTSESA LDTSYFTSRYSWNTSDDHAYPGSEFDDSSDADSLSGSSSCLSNRQDEVVS" CDS join(7456888..7458090,7458605..7458777,7458966..7459212, 7460886..7460978,7461058..7461198,7461305..7461397, 7461896..7462100,7462421..7462506,7463611..7463699, 7464664..7464715,7464839..7464895,7464991..7465164, 7465254..7465331,7465853..7465936) /locus_tag="TCM_012919" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:27651.m000097; paralog of Thecc1EG014957t1" /codon_start=1 /product="Kinase superfamily protein isoform 7" /protein_id="EOY21407.1" /db_xref="TAIR:AT3G17850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2C4" /translation="MTPPGEFWLQCEGIVQELDDKRQELPPGTLKQLYTKMLFILTRC TRLLQFHKESGLAEDEPVIQLRQSRILHPVDKRTSSGVLREAKSLSASKASKSSKAAS SKKAYSQEQHALDWKRDHVVLPGGLIAPTDDTPKNLESPASRDRIASWKKLPSPAKKG PKEVIASKEQNDNKIETLKRRGASDVDLAAMKLQELPPAKESQEHSSKHQHKVSWGYW GDQPNVSEESSIICRICEEEVATSNVEDHSRICAVADRCDQKGLSVDERLVRIAETLE KMTDSFANKDIQHVGSPDGAKVSNSSVTEESDVLSPKLSDWSRRGSEDMLDCFPEADN SVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQIDLLLSGKGA FSEQEDLPQMNELADIARCVANTPLVDDHSMPFLLSFLEELRLVIDRRKFDALTVETF GARIEKLIREKYLQLCELVDDEKVDITSTVIDEDAPLEDDVVRSLRTSPNHSSRDRTT IDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILIS VRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALE YLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTSLLDDE QPQLSASEHQQERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGVILFELIVGIPP FNAEHPQTIFDNILNRKIPWPRVSEEMSLEAKDLIDRLLTEDPHQRLGARGASEVKQH VFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNTSDDHAYPGSEFDDSSDADS LSGSSSCLSNRQDEVGDECGGLAEFESGSSVNYSFSNFSFKNLSQLASINYDLLSKGW KDDHPANSNA" gene 7467828..7472567 /locus_tag="TCM_012920" /note="dbxref CacaoGD:Thecc1EG012920" mRNA join(7467828..7468233,7469534..7469591,7471430..7472567) /locus_tag="TCM_012920" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage" CDS join(7468183..7468233,7469534..7469591,7471430..7471596) /locus_tag="TCM_012920" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21410.1" /translation="MLMWYLFILIDVDGIDEIRRQNDELVYVFYLELGSEIPVCSTSK CPSLVKRTVWCIEDKSALAAPLGRKGKALPSPANVTSFGNPFSNYTS" mobile_element 7469393..7469816 /note="source:CACAO_M_S_E16721_F36_scaffold_2 17784 18186" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7469813..7470625 /note="source:CACAO_M_S_E16721_F36_scaffold_2 3600 4448" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7470518..7471036 /note="source:CACAO_M_E4063_F12_scaffold_2 5375 5899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7472781..7478274 /note="source:CACAO_M_S_E17600_F76_scaffold_3 1 5494" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7478732..7482327) /locus_tag="TCM_012921" /note="dbxref CacaoGD:Thecc1EG012921" mRNA complement(join(7478732..7479853,7480391..7482327)) /locus_tag="TCM_012921" /product="Receptor-like kinase 1" /inference="alignment:exonerate- protein:2:ricco:27651.m000098" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017464t1" /inference="similar to AA sequence:ricco:27651.m000098" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8318t1" CDS complement(join(7479231..7479853,7480391..7481747)) /locus_tag="TCM_012921" /note="dbxref ricco:27651.m000098; paralog of Thecc1EG017464t1" /codon_start=1 /product="Receptor-like kinase 1" /protein_id="EOY21411.1" /db_xref="TAIR:AT1G48480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEF4" /translation="MQTQFFVIAILFFVLVQVTKPDLATDRAALLALRSSVGGRTLFW NISNQSPCLWAGVRCERNRVTVLRLPGVALSGQLPLGIFGNLTELRTLSLRLNSLTGQ LPSDLSLCENLRNLYLQGNRFSGEIPEFLFGLHDLVRLNLGVNNFSGEISVGFNNLTR LRTLLLDSNSLSGSVPDLSSLQNLDQFNVSNNLLNGSIPKELQKYGSSAFLGNLLCGQ PLDKACPATAAVGNASEPANPTDENQQEKKKKSKLSGGAIAGIVIGSVLGFLLIVMIL MILCRKKSSKKTRSIDIASIKNQELEIPGEKSGGEMENGGYGNGFSVAAAAAAAMVGG GGVKGGETNGAGAKKLVFFGNAGRVFDLEDLLRASAEVLGKGTFGTAYKAVLEGGNAV AVKRLKDVTISEREFKDRIEGVGAMDHQNLVPLRAYYFSRDEKLLVYDYMPMGSLSAL LHGNKGAGRTPLNWDIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARV SDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHSV LNEEGIDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDRRP SMSQVTMRIEELRRSSLPEQLDAQPDKVSDAADSR" mobile_element complement(7486549..7486593) /note="source:CACAO_hAT_E421_scaffold_1 3856 3900" /mobile_element_type="transposon:TIR/hAT" mobile_element 7486649..7487166 /note="source:scaffold_2_CACTA_0276 11481 12002" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7489022..7489109 /note="source:CACAO_M_E24671_F94_scaffold_4 4 79" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7489520..7490058) /note="source:INTACT1820F_F94_scaffold_12-int 2562 3187" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7489922..7490182) /note="source:scaffold_6_CACTA_0702 789 1038" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7492291..7492728) /note="source:CACAO_hAT_E3311_scaffold_8 3762 4157" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(7492699..7492816) /note="source:CACAO_hAT_E3311_scaffold_8 1 116" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(7492881..7493477) /note="source:INTACT639F_F363_scaffold_5-int 9049 10266" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7493478..7494349 /note="source:scaffold_3_CACTA_0379 1 872" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7494350..7494556) /note="source:INTACT639F_F363_scaffold_5-int 8623 9048" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7494932..7496404 /note="source:INTACT1625F_F66_scaffold_10-int 1 1500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7495685..7496703) /note="source:INTACT12_F107_scaffold_9-int 7491 8509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7501334..7501537) /note="source:INTACT711_F307_scaffold_9-int 1786 1985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7505093..7505778 /note="source:CACAO_M_E85205_F3_scaffold_10 1063 1744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7507723..7508108) /note="source:scaffold_10_CACTA_0140 5608 5976" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7508125..7508812) /note="source:CACAO_hAT_E2547_scaffold_5 5 699" /mobile_element_type="transposon:TIR/hAT" mobile_element 7509977..7510426 /note="source:CACAO_Mariner_E38_scaffold_2 1630 2080" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(7515405..7516848) /locus_tag="TCM_012922" /note="dbxref CacaoGD:Thecc1EG012922" mRNA complement(join(7515405..7516119,7516783..7516848)) /locus_tag="TCM_012922" /product="Uncharacterized protein" /note="quality class is medium, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc314t10_C2" CDS complement(7515752..7515976) /locus_tag="TCM_012922" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21412.1" /translation="MQQWLSFGVKAGNSKVWFFPIVWKSYERRSFLFVQCIQFYQLEV EMGGSCIEQKQQLSKSFTCSSKELRKRLAR" gene complement(7516193..7531367) /locus_tag="TCM_046738" /note="dbxref CacaoGD:Thecc1EG046738" mRNA complement(join(7516193..7516554,7516783..7516873, 7518617..7518700,7518856..7518951,7520966..7521073, 7522123..7522197,7522613..7522747,7522889..7522990, 7523097..7523219,7524756..7524923,7525018..7525144, 7525358..7525434,7525622..7525663,7528628..7528669, 7529264..7529330,7530150..7530265,7530349..7530478, 7530880..7530980,7531063..7531118,7531210..7531367)) /locus_tag="TCM_046738" /product="TRNA synthetase beta subunit family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008188001" /inference="similar to AA sequence:ricco:30075.m001188" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04630t00001" CDS complement(join(7516805..7516873,7518617..7518700, 7518856..7518951,7520966..7521073,7522123..7522197, 7522613..7522747,7522889..7522990,7523097..7523219, 7524756..7524923,7525018..7525144,7525358..7525434, 7525622..7525663,7528628..7528669,7529264..7529330, 7530150..7530265,7530349..7530478,7530880..7530980, 7531063..7531118,7531210..7531267)) /locus_tag="TCM_046738" /note="dbxref ricco:30075.m001188" /codon_start=1 /product="TRNA synthetase beta subunit family protein" /protein_id="EOY21413.1" /db_xref="TAIR:AT1G72550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGE9" /translation="MPTVSVGRDRLFAALGRSYTQEEFEDLCFNFGIELDDVTTEKAI ILKEKNLKDEKPSLDDEVIYKIEVPANRYDLLCLEGLALALRIFNGQEGIPRYTVANV SKESMLKMHVKRETSLIRPFVVCAVLRGITFDEAIYNSFIDLQDKLHQNICRKRALVA IGTHDLDTLQGPFTYEALPPPKINFVPLKQVKNFRADELMEFYKSDLKLKKFLHIIEK SKVFPVIYDHSRTVLSLPPIINSAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTAF SAYCERKFEVEPVEVISFDGNSSVYPDLSEYNMEVPLSYITGSIGVPLEVDEVTSLLN RMQLHAEQSGLGDNNINVSVPPTRSDILHPCDVMEDVAIAYGYNNIPRRKLSSLKPLP LNQLSDLVRYEIAMNGFSEVLTWILCSKKENFEMLNRKDDKSTAAIIGNPRSSDFEVV RTSLMPGMLKTVGHNKDHPKPIKIFEVGDVVLLDEKKDVGASNRRLLAALYCGANSGF ELIHSLVDRIMEVIGTPFVQVGDNTGYYIELSDEPEFLSGRQAKIIYKGRCIGIFGIV QPEVLNNFDIPDPCSFVELDMESFL" mobile_element 7524539..7524626 /note="source:scaffold_10_CACTA_0140 7344 7429" /mobile_element_type="transposon:TIR/CACTA" gene complement(7532561..7547955) /locus_tag="TCM_046739" /note="dbxref CacaoGD:Thecc1EG046739" mRNA complement(join(7532561..7532910,7533531..7533624, 7533735..7533808,7538706..7538866,7540496..7540625, 7541382..7541557,7542507..7542702,7543870..7543994, 7544089..7544184,7544493..7544561,7547549..7547955)) /locus_tag="TCM_046739" /product="Molecular chaperone Hsp40/DnaJ family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g11690.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027249t3" /inference="similar to AA sequence:Phytozome:POPTR_0015s04950.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2322t2" CDS complement(join(7532721..7532910,7533531..7533624, 7533735..7533808,7538706..7538866,7540496..7540625, 7541382..7541557,7542507..7542702,7543870..7543994, 7544089..7544184,7544493..7544561,7547549..7547860)) /locus_tag="TCM_046739" /note="paralog of Thecc1EG027249t3" /codon_start=1 /product="Molecular chaperone Hsp40/DnaJ family protein" /protein_id="EOY21414.1" /db_xref="Phytozome:POPTR_0015s04950.1" /db_xref="TAIR:AT3G17830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEF5" /translation="MPIISFPFYANVNLPIQSCSIRRHNWFVYHGIGSGSRSFDLGLG CSESQFFCNTPNLGVGVIKRERRRSGLIRAAGSDYYTTLNVSPGATLQEIKASYRKLA RKYHPDMNKSPGSEEKFKEISAAYEVLSDNEKRSLYDRLGEAGLQGGYDGSGGASPEV DPFEVYNAFFGGSDGFFGGMGEPGGFSFDLRNKGNNSLDIRYDLYLNFEESVYGGEHE IKISCLETCDDCGGTGAKSSSCIKSCSGCGGRGVVMKSQRTPFGMVSQVSTCSKCGGN GKIITDKCRRCGGSCKVKVKRSMRVIIPPGVSDGSTMRIQGEGNFDKKRGLAGDLFIV LHIREKQGIWRDGLNLYSKINVDYTEAILGTVVKVETVEGMKDLQIPCGIQPGDKVKL SRLGIPDVNKPSVRGDHHFIVNVLIPKDISNKERALVEELASLKASSKSYASSDGMNE VSASKVCASSKRVNGVSSLWNSIKAFLGQRQPGEGFASITAVTSASLWSRSKPDLVLT VSYFAIFLYTCIFTCTHRIKNDLRLRRREHSS" mobile_element 7548772..7548843 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3240 3312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7548775..7548821) /note="source:INTACT415F_F22_scaffold_4-int 2197 2243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7550713..7550823 /note="source:INTACT695_F301_scaffold_5-int 11854 11952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7553485..7553535 /note="source:INTACT261_F189_scaffold_2-int 3406 3456" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7553561..7554029) /note="source:CACAO_M_E23991_F4_scaffold_4 13959 14386" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7554372..7556242) /note="source:CACAO_M_S_E84261_F4_scaffold_6 1 1884" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7559815..7559839) /note="source:CACAO_on_S_E58_scaffold_2 14698 14727" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7559840..7562779 /note="source:CACAO_M_S_E17607_F245_scaffold_3 1 2940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7563523..7563574 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5662 5715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7563543..7563595 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3194 3246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7563968..7564113) /note="source:scaffold_1_CACTA_0024 2926 3071" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7564408..7564506 /note="source:INTACT261_F189_scaffold_2-int 12364 12459" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7565309..7565436) /note="source:CACAO_M_E35511_F5_scaffold_5 18580 18699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7565327..7568068) /note="source:scaffold_4_CACTA_0489 5922 8663" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7568003..7568079 /note="source:CACAO_M_S_E31635_F14_scaffold_3 4638 4718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7568256..7568354) /note="source:CACAO_M_E3884_F22_scaffold_1 13030 13129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7568760..7568868 /note="source:INTACT261_F189_scaffold_2-int 3404 3529" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7569306..7569504) /note="source:INTACT261_F189_scaffold_2-int 186 369" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7570138..7574694 /note="source:INTACT414_F210_scaffold_5-int 2137 6551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7574876..7575503) /note="source:scaffold_1_CACTA_0024 6913 7431" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7575593..7575679 /note="source:INTACT414_F210_scaffold_5-int 10188 10273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7575636..7575687) /note="source:CACAO_M_E3884_F22_scaffold_1 13212 13264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7575854..7576020 /note="source:CACAO_M_E48538_F49_scaffold_6 12163 12311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7577348..7580075 /note="source:CACAO_M_E12731_F73_scaffold_3 1 2728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7581722..7584668 /note="source:INTACT88_F12_scaffold_4-int 1266 4204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7584669..7584820) /note="source:INTACT261_F189_scaffold_2-int 215 351" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7586485..7586597 /note="source:CACAO_M_E45504_F98_scaffold_6 1997 2082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7586496..7586574) /note="source:CACAO_M_E72142_F322_scaffold_10 735 813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7595921..7596097) /note="source:CACAO_M_S_E6027_F12_scaffold_2 18411 18500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7596016..7596156 /note="source:INTACT28_F14_scaffold_3-int 857 1050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7597144..7597515) /note="source:INTACT597_F267_scaffold_2-int 8292 8663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7597507..7598189) /note="source:INTACT170_F12_scaffold_5-int 4799 5473" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7597909..7598374 /note="source:INTACT1373F_F385_scaffold_8-int 5541 5995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7598432..7598872) /note="source:INTACT170_F12_scaffold_5-int 1558 1997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7598873..7606373 /note="source:INTACT406_F208_scaffold_3-int 1 7501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7606374..7606752) /note="source:INTACT597_F267_scaffold_2-int 13009 13394" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7607120..7607793 /locus_tag="TCM_012927" /note="dbxref CacaoGD:Thecc1EG012927" mRNA 7607120..7607793 /locus_tag="TCM_012927" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044995t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 7607149..7607385 /locus_tag="TCM_012927" /note="paralog of Thecc1EG044995t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21415.1" /translation="MGHYFIANDYQTWKQIEDGSYKIEKDMANWNSHDLDLIELNAKD MHTIFSALREKQYNQVQNYENAKEIWDKLKELYG" mobile_element complement(7609519..7610575) /note="source:CACAO_M_E73118_F12_scaffold_10 1 1070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7611985..7612091) /note="source:CACAO_M_E3884_F22_scaffold_1 13090 13200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7613074..7613143) /note="source:INTACT130_F12_scaffold_9-int 9349 9392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7613302..7613377 /note="source:INTACT292_F22_scaffold_5-int 9535 9619" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7622979..7623883 /locus_tag="TCM_012930" /note="dbxref CacaoGD:Thecc1EG012930" mRNA join(7622979..7623169,7623806..7623883) /locus_tag="TCM_012930" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2291t1" CDS join(7622985..7623169,7623806..7623812) /locus_tag="TCM_012930" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21416.1" /translation="MPCVIPLLFYCFFIKRHKISPFSSYGRPSKEEREREEEQREKQE NLGEKFKEKVKKSRKQARW" mobile_element complement(7636715..7636726) /note="source:CACAO_M_S_E64832_F14_scaffold_5 1209 1217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7636727..7646799 /note="source:CACAO_M_S_E89200_F13_scaffold_8 1 14482" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7646799..7647502) /note="source:INTACT1798F_F56_scaffold_10-int 11676 12379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7647503..7650471) /note="source:CACAO_M_E85348_F277_scaffold_11 1 3007" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7647931..7662389 /locus_tag="TCM_012933" /note="dbxref CacaoGD:Thecc1EG012933" mRNA join(7647931..7648106,7658186..7658378,7658543..7658586, 7661717..7662389) /locus_tag="TCM_012933" /product="Cofactor assembly" /inference="alignment:exonerate- protein:2:ricco:28180.m000394" /inference="similar to AA sequence:Phytozome:POPTR_0002s06280.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00021t00003_C1" mobile_element complement(7650472..7652555) /note="source:INTACT1798F_F56_scaffold_10-int 9636 11680" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7652576..7652740 /note="source:CACAO_M_E72867_F9_scaffold_10 21624 21776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7652882..7653494) /note="source:scaffold_2_CACTA_0260 3900 4514" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7654005..7654164) /note="source:CACAO_M_E3326_F17_scaffold_1 285 443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7655633..7656157) /note="source:scaffold_8_CACTA_0858 14210 14727" /mobile_element_type="transposon:TIR/CACTA" CDS join(7658189..7658378,7658543..7658586,7661717..7662253) /locus_tag="TCM_012933" /codon_start=1 /product="Cofactor assembly" /protein_id="EOY21417.1" /db_xref="Phytozome:POPTR_0002s06280.1" /db_xref="TAIR:AT5G36120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H7Y3" /translation="MGLGIMAFVLLFIVTLPSLSLWTFSVCISHVTQTHSRQDNVPSL ILLSPMAASSHLLSHILVKEWRPLIVKKENSAIFEGFKYPTRRSSYQGHRVSRSSTYC CQGANISTIELMPSKLIISGEPPYIFGIARNVNLHMQVSPEVSSDLTRRLLLADLDPA TAKLAISILGPFLSAFAFLFILRIVMSWYPKLPLEKFPYVIAYAPTEPFLMATRKLIP PLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLVSQQVS" gene complement(7658253..7664672) /locus_tag="TCM_012934" /note="dbxref CacaoGD:Thecc1EG012934" mRNA complement(join(7658253..7658376,7658541..7658586, 7661717..7662274,7662548..7662673,7662768..7662823, 7662906..7662993,7663167..7663244,7663362..7663432, 7663815..7664016,7664129..7664336,7664431..7664591)) /locus_tag="TCM_012934" /product="Zinc-finger domain of monoamine-oxidase A repressor R1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024944" /inference="similar to AA sequence:ricco:29654.m000300" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00021t00005; alternateUTRof:Thecc1EG012934t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1048t8" mRNA complement(join(7658317..7658378,7658543..7658588, 7660173..7660242,7661718..7662274,7662548..7662673, 7662768..7662823,7662906..7662993,7663167..7663244, 7663362..7663432,7663815..7664016,7664129..>7664234)) /locus_tag="TCM_012934" /product="Zinc-finger domain of monoamine-oxidase A repressor R1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024944" /inference="similar to AA sequence:ricco:29654.m000300" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00229t00002; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1048t8" mRNA complement(join(7661779..7662274,7662548..7662673, 7662768..7662823,7662906..7662993,7663167..7663244, 7663362..7663432,7663815..7664016,7664129..7664336, 7664431..7664672)) /locus_tag="TCM_012934" /product="Zinc-finger domain of monoamine-oxidase A repressor R1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024944" /inference="similar to AA sequence:ricco:29654.m000300" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1048t8; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1048t8" CDS complement(join(7662603..7662673,7662768..7662823, 7662906..7662993,7663167..7663244,7663362..7663432, 7663815..7664016,7664129..7664336,7664431..7664496)) /locus_tag="TCM_012934" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29654.m000300" /codon_start=1 /product="Zinc-finger domain of monoamine-oxidase A repressor R1 isoform 1" /protein_id="EOY21418.1" /translation="MGRLRVKSDYETLRNARIVENQARLASLGLHKTISELRSIVSSA KSEKTQLRKWQKKDYEITPLRRSNRLKRTPAASTCTSNFLRRSSRLRGSDIGEENGSN SSSGEGEEKRPANAPLVKTYGARHQLSPKDSARRCRRKEGRGCVYNSVFGICCHFCRQ KTLCAEEDCKRCGNLDVNQPCIGKTDCSVCHSSNGVLCRACLKLRYGEELEEVRENKE WMCPHCIEEKGINPYWICNSSICLKNRRMAPTGIAIYRALELGYKSVAHLLMDELQRR DPS" CDS complement(join(7662603..7662673,7662768..7662823, 7662906..7662993,7663167..7663244,7663362..7663432, 7663815..7664016,7664129..7664336,7664431..7664496)) /locus_tag="TCM_012934" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29654.m000300" /codon_start=1 /product="Zinc-finger domain of monoamine-oxidase A repressor R1 isoform 1" /protein_id="EOY21419.1" /translation="MGRLRVKSDYETLRNARIVENQARLASLGLHKTISELRSIVSSA KSEKTQLRKWQKKDYEITPLRRSNRLKRTPAASTCTSNFLRRSSRLRGSDIGEENGSN SSSGEGEEKRPANAPLVKTYGARHQLSPKDSARRCRRKEGRGCVYNSVFGICCHFCRQ KTLCAEEDCKRCGNLDVNQPCIGKTDCSVCHSSNGVLCRACLKLRYGEELEEVRENKE WMCPHCIEEKGINPYWICNSSICLKNRRMAPTGIAIYRALELGYKSVAHLLMDELQRR DPS" CDS complement(join(7662603..7662673,7662768..7662823, 7662906..7662993,7663167..7663244,7663362..7663432, 7663815..7664016,7664129..>7664234)) /locus_tag="TCM_012934" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29654.m000300" /codon_start=1 /product="Zinc-finger domain of monoamine-oxidase A repressor R1 isoform 3" /protein_id="EOY21420.1" /translation="KDYEITPLRRSNRLKRTPAASTCTSNFLRRSSRLRGSDIGEENG SNSSSGEGEEKRPANAPLVKTYGARHQLSPKDSARRCRRKEGRGCVYNSVFGICCHFC RQKTLCAEEDCKRCGNLDVNQPCIGKTDCSVCHSSNGVLCRACLKLRYGEELEEVREN KEWMCPHCIEEKGINPYWICNSSICLKNRRMAPTGIAIYRALELGYKSVAHLLMDELQ RRDPS" mRNA complement(join(7662650..7662673,7662768..7662823, 7662906..7663244,7663362..7663432,7663815..7664016, 7664129..7664336,7664431..7664672)) /locus_tag="TCM_012934" /product="Zinc-finger domain of monoamine-oxidase A repressor R1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024944" /inference="similar to AA sequence:Phytozome:POPTR_0012s04150.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1272t6; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1048t8" CDS complement(join(7663084..7663244,7663362..7663432, 7663815..7664016,7664129..7664336,7664431..7664496)) /locus_tag="TCM_012934" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Zinc-finger domain of monoamine-oxidase A repressor R1 isoform 4" /protein_id="EOY21421.1" /db_xref="Phytozome:POPTR_0012s04150.1" /translation="MGRLRVKSDYETLRNARIVENQARLASLGLHKTISELRSIVSSA KSEKTQLRKWQKKDYEITPLRRSNRLKRTPAASTCTSNFLRRSSRLRGSDIGEENGSN SSSGEGEEKRPANAPLVKTYGARHQLSPKDSARRCRRKEGRGCVYNSVFGICCHFCRQ KTLCAEEDCKRCGNLDVNQPCIGKTDCSVCHSSNGVLCRACLKLRYGEGKISTLDTEQ KTDYDFVKKKKCGSGDF" mobile_element complement(7664042..7664103) /note="source:CACAO_M_E23115_F96_scaffold_4 1650 1702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7667009..7670050 /note="source:scaffold_9_CACTA_0931 23 3057" /mobile_element_type="transposon:TIR/CACTA" gene 7680419..7683144 /locus_tag="TCM_012937" /note="dbxref CacaoGD:Thecc1EG012937" mRNA join(7680419..7680656,7681527..7682039,7682125..7682441, 7682651..7683144) /locus_tag="TCM_012937" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" mobile_element 7680676..7680849 /note="source:CACAO_M_E24018_F98_scaffold_4 2000 2108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7680691..7680818) /note="source:CACAO_M_S_E14849_F156_scaffold_2 666 794" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7680942..7681013 /note="source:CACAO_M_E72142_F322_scaffold_10 731 801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7680955..7681020) /note="source:CACAO_M_S_E14849_F156_scaffold_2 705 766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7681216..7681343 /note="source:CACAO_M_E24018_F98_scaffold_4 1999 2120" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(7681689..7682039,7682125..7682441,7682651..7682981) /locus_tag="TCM_012937" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21422.1" /translation="MEFLCFMNEAAYNQLIENWDAVHWCQALFSDFSKYDVIDNNMFE TFNGVIIEARCKSIISMLEDIELYVIRRLVQNKEYGMKWKTEHDLRILTKLEKKNKGL ARKWEMDWNGDHLYEILVEVQASMPSVLSIMKERTLQNIWQTLLKRVNTSRLMNSLSI LSKGQYSGLSGMWRLFYLRMSRDQLNSLRNREEENQLKAQRRKECRGSKDNEIHCFHQ EGHNSAPKEAANVAPSEAVGAAPSEATEAAGAVPSEPAASVPSVVGSITSNAVKRKKV TTIKRTQFATTTMEGFNSQYVAALRLKLKHSNPKGKGTIAYRHQTQSASILTTPSR" mobile_element complement(7684488..7684539) /note="source:CACAO_M_E26982_F230_scaffold_4 1172 1223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7687458..7689752) /note="source:scaffold_3_CACTA_0382 9598 11899" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7689055..7690029 /note="source:CACAO_M_E24592_F195_scaffold_4 338 1326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7689927..7690040) /note="source:scaffold_2_CACTA_0262 5406 5521" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7695027..7696613 /note="source:CACAO_M_E3326_F17_scaffold_1 709 2304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7696621..7699075) /note="source:CACAO_M_S_E7105_F60_scaffold_2 6795 9283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7699083..7700278) /note="source:INTACT93F_F345_scaffold_2-int 19121 20308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7700276..7701349 /note="source:CACAO_M_E59463_F12_scaffold_9 11828 12902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7701350..7702736 /note="source:CACAO_M_S_E64832_F14_scaffold_5 2848 4267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7701350..7701379 /note="source:INTACT1432F_F101_scaffold_9-int 3225 3251" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(7710264..7710506) /note="source:CACAO_M_E49885_F60_scaffold_7 9160 9402" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7710506..7710744) /note="source:scaffold_2_CACTA_0275 1853 2091" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7710725..7711090) /note="source:CACAO_M_S_E7105_F60_scaffold_2 6137 6459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7711057..7711616 /note="source:INTACT594_F265_scaffold_8-int 2706 3272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7717008..7721357) /note="source:CACAO_M_S_E84376_F22_scaffold_6 7912 16181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7720469..7724323 /note="source:INTACT224_F176_scaffold_8-int 14860 20448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7724309..7724461 /note="source:CACAO_M_E84368_F4_scaffold_10 4357 4506" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7724327..7729873) /note="source:CACAO_M_S_E52921_F60_scaffold_5 3 5602" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7731831..7733577) /locus_tag="TCM_012943" /note="dbxref CacaoGD:Thecc1EG012943" mRNA complement(join(7731831..7732310,7732421..7732549, 7732645..7732837,7733219..7733577)) /locus_tag="TCM_012943" /product="Nudix hydrolase, putative" /inference="alignment:exonerate- protein:2:frave:gene09349.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011039t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s04970.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10750t00001" CDS complement(join(7732179..7732310,7732421..7732549, 7732645..7732837,7733219..7733403)) /locus_tag="TCM_012943" /note="paralog of Thecc1EG011039t1" /codon_start=1 /product="Nudix hydrolase, putative" /protein_id="EOY21423.1" /db_xref="Phytozome:POPTR_0015s04970.1" /db_xref="TAIR:AT1G18300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LE73" /translation="MGGISGFLTTFPPFIYFFWSLLERLPVKLPLPIDKLISRVSYPR TGRQLQRYDKRGFRLVVGCIPYRYRKTEEATSIDEVIEVLVINAQNGQGMLFPKGGWE KDETMEAAAIRETREEAGVIGNIECKLGKWLYKSKRQSKFHEGHMFPLLVEQELDRWP EENIRNRKWVTVSEAREQCPHLWMREALEELVRRHMQQQQRHQGQVNKTACN" mobile_element 7733879..7734975 /note="source:CACAO_on_S_E46_scaffold_2 379 1434" /mobile_element_type="transposon:TIR/Mutator" gene 7735401..7735943 /locus_tag="TCM_012944" /note="dbxref CacaoGD:Thecc1EG012944" mRNA 7735401..7735943 /locus_tag="TCM_012944" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s01860.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042040t1" /inference="similar to AA sequence:Phytozome:Glyma11g20660.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2354t1" CDS 7735475..7735675 /locus_tag="TCM_012944" /note="paralog of Thecc1EG042040t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21424.1" /db_xref="Phytozome:Glyma11g20660.1" /translation="MGLHPTLIKALRTHARLRRLVYISCNPESLVANAIELCTPSLKK VEKRKKDNRGWRNMSSAGLARH" mobile_element 7736733..7736815 /note="source:CACAO_M_E23991_F4_scaffold_4 2074 2162" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7740461..7740685 /note="source:CACAO_on_E681_scaffold_9 46 268" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 7743014..7743142 /note="source:CACAO_M_E50108_F4_scaffold_7 13849 13979" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7743162..7745929) /note="source:CACAO_PIF_E31_scaffold_2 1271 4064" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 7745504..7746063 /note="source:CACAO_on_E59_A_scaffold_8 1589 2167" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(7747275..7747590) /note="source:CACAO_on_E33_A_scaffold_3 11298 11616" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 7752842..7753612 /note="source:scaffold_9_CACTA_0924 4471 5264" /mobile_element_type="transposon:TIR/CACTA" gene complement(7756338..7757775) /locus_tag="TCM_012947" /note="dbxref CacaoGD:Thecc1EG012947" mRNA complement(7756338..7757775) /locus_tag="TCM_012947" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003302t1" /inference="similar to AA sequence:Phytozome:Glyma10g09190.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.81 coverage" CDS complement(7756998..7757291) /locus_tag="TCM_012947" /note="paralog of Thecc1EG003302t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21425.1" /db_xref="Phytozome:Glyma10g09190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5APW4" /translation="MGPFIFSFNNCYILLAIYYVSKSVETMALPANDAKVMLKFLRKN IFTRFGIPLVIVSGEGSHFCNNYFAALLAKYGMTHKVAATYHPQTSGQAEISN" mobile_element 7758582..7759245 /note="source:CACAO_M_S_E64942_F265_scaffold_5 1039 1703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7760961..7761078 /note="source:scaffold_8_CACTA_0860 590 705" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7761282..7761360) /note="source:CACAO_M_E56674_F14_scaffold_8 12892 12976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7761443..7761488 /note="source:INTACT266_F12_scaffold_7-int 12015 12059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7762481..7762638) /note="source:scaffold_8_CACTA_0860 422 578" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7762781..7762905 /note="source:CACAO_M_E3884_F22_scaffold_1 13217 13339" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7768080..7768179 /note="source:INTACT405F_F91_scaffold_4-int 18522 18635" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7769267..7769357) /note="source:scaffold_8_CACTA_0860 500 590" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7773033..7773073 /note="source:CACAO_M_E58601_F7_scaffold_9 8820 8859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7773521..7773639) /note="source:CACAO_M_E58601_F7_scaffold_9 5295 5414" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7774772..7774835 /note="source:CACAO_M_E47740_F12_scaffold_6 5625 5688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7775579..7785566 /note="source:CACAO_M_E12756_F7_scaffold_3 1 9988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7787517..7787973) /note="source:INTACT594_F265_scaffold_8-int 5744 6201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7788163..7792402) /note="source:INTACT594_F265_scaffold_8-int 1273 5545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7792697..7793207) /note="source:INTACT594_F265_scaffold_8-int 444 992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7795874..7796345) /note="source:INTACT594_F265_scaffold_8-int 4483 4954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7804461..7814138) /note="source:CACAO_M_S_E119127_F246_scaffold_9 1 9750" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7814060..7814156 /note="source:CACAO_M_E69460_F12_scaffold_9 10745 10842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7816734..7817075) /note="source:CACAO_M_E58601_F7_scaffold_9 9618 9942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7817176..7818797) /note="source:scaffold_5_CACTA_0612 8733 10336" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7820783..7820871 /note="source:scaffold_2_CACTA_0262 14483 14565" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7821932..7822007 /note="source:scaffold_9_CACTA_0927 13586 13662" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7821944..7824645) /note="source:CACAO_M_E49559_F88_scaffold_7 6493 9171" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7824538..7824661 /note="source:CACAO_M_E22484_F328_scaffold_3 14149 14263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7824963..7826496 /note="source:CACAO_M_S_E17649_F17_scaffold_3 1 1534" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7828999..7834736) /locus_tag="TCM_012953" /note="dbxref CacaoGD:Thecc1EG012953" mRNA complement(join(7828999..7829591,7830515..7830651, 7830861..7830876,7834623..7834736)) /locus_tag="TCM_012953" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(7829120..7829332) /locus_tag="TCM_012953" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21426.1" /translation="MGRRKIKACLLPYENLLILSFPLSIRRLDDLQIQFNSKHDDYTV RLRYRILCCTLWGLNEASSSIHAVLT" mobile_element complement(7831003..7833612) /note="source:INTACT212F_F351_scaffold_3-int 2388 4912" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7842604..7843215) /locus_tag="TCM_012954" /note="dbxref CacaoGD:Thecc1EG012954" mRNA complement(7842604..7843215) /locus_tag="TCM_012954" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.71 coverage" CDS complement(7842872..7843132) /locus_tag="TCM_012954" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21427.1" /translation="MGNRMLHYDNKQRIRERRRENKWERVVLHLVTRHRFGKEQADLV LDVIKNQRWSDFEKREKNREKVPRERQGEEEERSSREGMHQI" mobile_element complement(7845947..7846009) /note="source:CACAO_M_E23752_F369_scaffold_4 412 475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7845969..7846025) /note="source:scaffold_2_CACTA_0262 16252 16309" /mobile_element_type="transposon:TIR/CACTA" gene 7850119..7851131 /locus_tag="TCM_012957" /note="dbxref CacaoGD:Thecc1EG012957" mRNA 7850119..7851131 /locus_tag="TCM_012957" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g11800.1" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04578t00001" CDS 7850506..7850745 /locus_tag="TCM_012957" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21428.1" /translation="MELEQKMGNNNNNGNFKAKEDMGVAVHSQVRKIKHELEQSIDWS PGQPEMRPVLREISRHQLSRSRLGLSGRPISVGHL" gene 7855086..7856939 /locus_tag="TCM_012958" /note="dbxref CacaoGD:Thecc1EG012958" mRNA join(7855086..7855382,7855564..7855784,7856178..7856939) /locus_tag="TCM_012958" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.47 coverage" CDS join(7855327..7855382,7855564..7855784,7856178..7856194) /locus_tag="TCM_012958" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21429.1" /translation="MEEEQQLQAARVSRHKDVWEERELNLARQNGNGMMVSGICLVAK MAFEEVKPIFEEKLPKTVQTPRSSNFQGSFKDALIGEKNEIKEADASIVIGDS" mobile_element complement(7856956..7859639) /note="source:INTACT24F_F12_scaffold_1-int 1250 3935" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 7866813..7876812 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 7876813..7878051 /note="source:CACAO_M_E49857_F85_scaffold_7 5739 6957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7877346..7878136) /note="source:INTACT139F_F15_scaffold_2-int 7606 8368" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7878140..7878242) /note="source:CACAO_M_S_E64440_F7_scaffold_5 15887 15989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7878231..7878296) /note="source:INTACT766_F325_scaffold_5-int 4734 4799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7878252..7878465 /note="source:INTACT551_F248_scaffold_7-int 17433 17648" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(7878266..7879711) /locus_tag="TCM_012960" /note="dbxref CacaoGD:Thecc1EG012960" mRNA complement(7878266..7879711) /locus_tag="TCM_012960" /product="Gag protease polyprotein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045983t1" /inference="similar to AA sequence:Phytozome:POPTR_1126s00200.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(7878438..7879586) /locus_tag="TCM_012960" /note="paralog of Thecc1EG045983t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY21430.1" /db_xref="Phytozome:POPTR_1126s00200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBB7" /translation="MRLDDDMKLIVATRLLEKRARTWWSSVKSHSATPLTWSDFIREF DSQYFTYFYQREKKKEFLSLKQGNLIVEEYETRFNELMLYVLDLVKSEQDQANYFEEK LRNKIKERMTVIGREPHKEVVQMALRVEKLANENRRMLAEIVKRRNPSGFFSQPPKRG KDSFVSRSTTSAPITSFRPSVSQTQQRSPKFSKPEMTTSKKSFGGSDRCRHCGKYHVG LCKKLVRCFYCDQLGHYRSDCPQLGRAIVAISSPSAHTNVQRKDSTEVQPRSGVTIRS DVESNASAYPPPRPQTRISTRVFAVTEDEARVQLGAVTGTTILIDKYAYALIDSDLDK FQVSITFASFTSRNLSPLEEENVVHTPLGEKLIRNSCYRDYGVDMTVE" mobile_element 7880629..7883270 /note="source:CACAO_M_E49857_F85_scaffold_7 4318 6957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7884736..7887688) /note="source:CACAO_M_S_E64440_F7_scaffold_5 3970 6914" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7893166..7894271 /locus_tag="TCM_012963" /note="dbxref CacaoGD:Thecc1EG012963" mRNA join(7893166..7893318,7893421..7893496,7893585..7894271) /locus_tag="TCM_012963" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS join(7893298..7893318,7893421..7893496,7893585..7894105) /locus_tag="TCM_012963" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21431.1" /translation="MDSPSSMTCVLKVDTHSRDCHKPLIDILKGLQELGNLSSLLLVL YSSDVSYSIDAQQGLVYISGKVEPHKILRMLGNAGKHVRLSHLQYGNQTPGRLENCCN NLSPRYSPYRNINYGYFRCERIDGYTDDYECGYFPNGRSDGNRFDSDYQHYQHGNPLS RNHHLNHRCHHYYEPMEQHAPLPIFDTSEYDLNAGKVKGSCCHIM" mobile_element 7896060..7897173 /note="source:CACAO_M_S_E99975_F143_scaffold_9 3 1106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7897336..7897451) /note="source:scaffold_5_CACTA_0607 9967 10091" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7898109..7898217 /note="source:scaffold_8_CACTA_0859 15826 15934" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7898637..7898754 /note="source:INTACT277_F12_scaffold_9-int 92 216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7898958..7898989) /note="source:INTACT537_F22_scaffold_2-int 733 764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7900017..7900123) /note="source:INTACT189_F49_scaffold_5-int 17793 17903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7900281..7900335) /note="source:INTACT189_F49_scaffold_5-int 17713 17767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7900756..7904165 /note="source:CACAO_M_E12773_F323_scaffold_3 1 3410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7905139..7905158) /note="source:CACAO_M_S_E52921_F60_scaffold_5 16527 16550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7905159..7905861 /note="source:CACAO_M_E12225_F323_scaffold_3 1 701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7909857..7910187 /note="source:INTACT189_F49_scaffold_5-int 15716 16047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7910200..7911720 /note="source:INTACT189_F49_scaffold_5-int 16133 17566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7911801..7912065 /note="source:INTACT189_F49_scaffold_5-int 17585 17869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7912066..7915738 /note="source:INTACT131_F13_scaffold_10-int 1 3777" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7913384..7916091 /locus_tag="TCM_012968" /note="dbxref CacaoGD:Thecc1EG012968" mRNA join(7913384..7913762,7913886..7914023,7915732..7916091) /locus_tag="TCM_012968" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032555t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS join(7913655..7913762,7913886..7914023,7915732..7916064) /locus_tag="TCM_012968" /note="paralog of Thecc1EG032555t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21432.1" /translation="MFKMELGEDITSMLDRFTNITNKLSQLGKLIPEHEIVELKEEEE EDRKEAKEKKKSIALKASILEEELEELSCDDEKELALINTQPLGKFDAKIDEVIFLGY ALNSKAYRVFNKKTLNIEESIHVVFDESNDLQKEIHVDDDDVEILEKQMKEMSLENNK NNEESPPRREKETPSLKDLQRTKNQHNDLPRS" mobile_element 7915738..7916077 /note="source:INTACT131_F13_scaffold_10-int 4027 4367" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7916071..7917296) /note="source:INTACT125_F13_scaffold_10-int 791 2015" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7917297..7927519 /note="source:CACAO_M_S_E66372_F33_scaffold_5 1 14079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7927520..7935133 /note="source:INTACT195F_F15_scaffold_3-int 1 7614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7935024..7935145) /note="source:CACAO_M_E44425_F33_scaffold_6 4650 4770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7935134..7935883 /note="source:CACAO_M_S_E86138_F33_scaffold_7 2212 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7935881..7936676) /note="source:INTACT125_F13_scaffold_10-int 1 787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7936678..7936813 /note="source:CACAO_M_E48538_F49_scaffold_6 12210 12350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7941314..7941324 /note="source:INTACT135F_F90_scaffold_2-int 16973 17066" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7941325..7941406 /note="source:INTACT537_F22_scaffold_2-int 16768 16849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7941410..7942839 /note="source:CACAO_M_E4676_F9_scaffold_2 1 1417" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7943167..7944058 /note="source:CACAO_M_E49857_F85_scaffold_7 4059 4950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7944059..7947016 /note="source:CACAO_M_E12782_F33_scaffold_3 1 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7947134..7948489 /note="source:CACAO_M_E49857_F85_scaffold_7 4962 6312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7948590..7949227 /note="source:INTACT300_F7_scaffold_5-int 5671 6256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7959820..7965200) /note="source:INTACT636_F7_scaffold_5-int 4534 9840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7965791..7969650 /note="source:INTACT33_F7_scaffold_5-int 14313 18125" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7969651..7970000 /note="source:scaffold_9_CACTA_0934 6021 6368" /mobile_element_type="transposon:TIR/CACTA" gene complement(7972258..7973381) /locus_tag="TCM_012972" /note="dbxref CacaoGD:Thecc1EG012972" mRNA complement(7972258..7973381) /locus_tag="TCM_012972" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(7972815..7973030) /locus_tag="TCM_012972" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21433.1" /translation="MEEPQIKKIYQQQATLATIEKDPSTKKNKNTQTTKTQRLTQKKP QSNIKKNRAKREKRRRGREKRRRVRRR" mobile_element 7973348..7975007 /note="source:CACAO_M_E69760_F9_scaffold_9 8001 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7974988..7975077 /note="source:CACAO_M_S_E51699_F7_scaffold_4 2891 2983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7975008..7975081) /note="source:INTACT504_F7_scaffold_1-int 6982 7055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7975767..7977850) /note="source:CACAO_M_S_E15214_F378_scaffold_2 1016 3085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7977851..7978295) /note="source:CACAO_M_S_E31650_F33_scaffold_3 2512 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7980470..7981140) /note="source:CACAO_M_E43590_F7_scaffold_5 6588 7261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7981137..7982130) /note="source:CACAO_M_S_E15214_F378_scaffold_2 1 1020" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7982502..7983962) /note="source:CACAO_M_E69760_F9_scaffold_9 11939 13383" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7985217..7988631) /locus_tag="TCM_012973" /note="dbxref CacaoGD:Thecc1EG012973" mRNA complement(join(7985217..7985618,7985742..7985901, 7986171..7986208,7986300..7986353,7986462..7986536, 7986664..7986792,7987052..7987139,7987255..7987361, 7987497..7987545,7987659..7987762,7987855..7987894, 7988052..7988631)) /locus_tag="TCM_012973" /product="Glutamine synthase clone R1, 1,ATGLN1,1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008483001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017447t1" /inference="similar to AA sequence:Phytozome:GSVIVT01030697001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11660t00001" mRNA complement(join(7985228..7985618,7985742..7985901, 7986171..7986208,7986300..7986355,7986462..7986536, 7986664..7986792,7987052..7987139,7987255..7987361, 7987497..7987545,7987659..7987762,7987855..7987894, 7988052..7988292)) /locus_tag="TCM_012973" /product="Glutamine synthase clone R1, 1,ATGLN1,1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008483001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017447t1" /inference="similar to AA sequence:Phytozome:GSVIVT01030697001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3957t1; inference alignment:Newbler:10:TSA:cgbaL_g11660t00001" CDS complement(join(7985466..7985618,7985742..7985901, 7986171..7986208,7986300..7986353,7986462..7986536, 7986664..7986792,7987052..7987139,7987255..7987361, 7987497..7987545,7987659..7987762,7987855..7987894, 7988052..7988125)) /locus_tag="TCM_012973" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017447t1" /codon_start=1 /product="Glutamine synthase clone R1, 1,ATGLN1,1 isoform 1" /protein_id="EOY21434.1" /db_xref="Phytozome:GSVIVT01030697001" /db_xref="TAIR:AT5G37600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FMD9" /translation="MSLLSDLVNLNLSETTEKVIAEYIWIGGSGMDLRSKARTLPAPV SDPQKLPTWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPI PTNKRYNAAKIFSHPKVVAEEPWYGIEQEYTLLQKEVKWPIGWPTGGYPGPQGPYYCG VGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVAR YLLERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEIIKKAIENLKLR HKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRDTEKCGKGYFEDRRP ASNMDPYVVTSMIAETTILWKP" CDS complement(join(7985888..7985901,7986171..7986208, 7986300..7986355,7986462..7986536,7986664..7986792, 7987052..7987139,7987255..7987361,7987497..7987545, 7987659..7987762,7987855..7987894,7988052..7988125)) /locus_tag="TCM_012973" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017447t1" /codon_start=1 /product="Glutamine synthase clone R1, 1,ATGLN1,1 isoform 2" /protein_id="EOY21435.1" /db_xref="Phytozome:GSVIVT01030697001" /db_xref="TAIR:AT5G37600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FMD9" /translation="MSLLSDLVNLNLSETTEKVIAEYIWIGGSGMDLRSKARTLPAPV SDPQKLPTWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPI PTNKRYNAAKIFSHPKVVAEEPWYGIEQEYTLLQKEVKWPIGWPTGGYPGPQGPYYCG VGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVAR YLLERGLLRLLEWFSPLTLNPSRVTGMGLAHTQTIAPSP" mobile_element 7993717..7993755 /note="source:CACAO_M_E14153_F378_scaffold_3 1763 1801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7995750..7995821) /note="source:scaffold_2_CACTA_0262 3313 3385" /mobile_element_type="transposon:TIR/CACTA" gene 7996244..7997621 /locus_tag="TCM_012976" /note="dbxref CacaoGD:Thecc1EG012976" mRNA join(7996244..7996269,7997365..7997621) /locus_tag="TCM_012976" /product="Uncharacterized protein" /note="quality class is strong-expertchoice, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1271t6" CDS join(7996245..7996269,7997365..7997510) /locus_tag="TCM_012976" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21436.1" /translation="MKKRHQCQSLLASPCSHLFATFVGVNILLETALHIIIGLGSHFK TITSTFNIKKDN" mobile_element 8000246..8003548 /note="source:CACAO_M_E12798_F82_scaffold_3 1 3303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8003804..8006374 /note="source:CACAO_M_S_E17693_F1_scaffold_3 1 2571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8008137..8010873 /note="source:CACAO_M_S_E17694_F231_scaffold_3 1 2737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8013661..8016442 /note="source:CACAO_M_S_E6055_F310_scaffold_2 10313 13096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8015028..8021948) /note="source:INTACT506_F233_scaffold_3-int 1755 8691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8020923..8022208 /note="source:CACAO_M_S_E6055_F310_scaffold_2 10315 11635" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8022209..8025042 /note="source:CACAO_M_E70239_F392_scaffold_10 1 2827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8024948..8025056) /note="source:INTACT649F_F368_scaffold_5-int 4128 4232" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8025043..8031749) /note="source:CACAO_M_E65050_F7_scaffold_9 7856 13927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8031748..8033191 /note="source:CACAO_M_S_E6055_F310_scaffold_2 11678 13115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8033835..8033878) /note="source:CACAO_M_S_E7994_F98_scaffold_2 2049 2093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8035720..8036225) /note="source:scaffold_1_CACTA_0009 13310 13829" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8036042..8039666) /note="source:CACAO_Mutator_E1998_scaffold_9 6519 10204" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8039822..8039869) /note="source:CACAO_Mutator_E1998_scaffold_9 6459 6506" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8040335..8041913) /note="source:CACAO_Mutator_E1998_scaffold_9 4826 6459" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8041898..8042168) /note="source:CACAO_Mutator_E1998_scaffold_9 4023 4292" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8042218..8047166) /note="source:CACAO_M_S_E119877_F5_scaffold_10 5249 10177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8047164..8047193 /note="source:CACAO_M_E33977_F20_scaffold_4 10607 10636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8047180..8048493) /note="source:CACAO_M_S_E5046_F335_scaffold_1 5787 7100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8048594..8048955) /note="source:CACAO_M_S_E5046_F335_scaffold_1 5417 5778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8049056..8050276) /note="source:CACAO_M_S_E5046_F335_scaffold_1 4137 5357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8050273..8052928) /note="source:CACAO_on_S_E176_scaffold_5 962 3621" /mobile_element_type="transposon:TIR/Mutator" mobile_element 8052929..8055499 /note="source:CACAO_M_S_E5046_F335_scaffold_1 18259 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8055500..8056734 /note="source:CACAO_on_E193_scaffold_6 10877 11903" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8056477..8056909) /note="source:CACAO_Mutator_E1149_scaffold_5 1 354" /mobile_element_type="transposon:TIR/Mutator" gene complement(8057414..8063027) /locus_tag="TCM_012983" /note="dbxref CacaoGD:Thecc1EG012983" mRNA complement(join(8057414..8059462,8059769..8060023, 8060114..8060197,8060322..8060387,8060514..8060774, 8061076..8061126,8061217..8061277,8061344..8061639, 8061725..8061950,8062699..8062768,8062855..8063027)) /locus_tag="TCM_012983" /product="Potassium transporter 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016852t1" /inference="similar to AA sequence:ricco:27791.m000083" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete" CDS complement(join(8058390..8059462,8059769..8060023, 8060114..8060197,8060322..8060387,8060514..8060774, 8061076..8061126,8061217..8061277,8061344..8061639, 8061725..8061950,8062699..8062768,8062855..8062865)) /locus_tag="TCM_012983" /note="dbxref ricco:27791.m000083; paralog of Thecc1EG016852t1" /codon_start=1 /product="Potassium transporter 2" /protein_id="EOY21437.1" /db_xref="TAIR:AT2G40540.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVB0" /translation="MFTFVSLLLLFFIDAPLSPGTYSNPFQKETWMHTILLSFQSLGV VYGRLSTAPLYVFGSIPPKDFKSEESVYEYFSFIFWTLTIVSLVKYAFIVMRADDDGE GGTFALYSLLCRHAKVGLLPNDKSANDVMHYEAGSPLRTKVKSRARRAIAKHKSSHYL MLFLALFGSCMIIGDAVLTPAISGLTNLTKFSIFGIVFFLWFYQLHQAFNDHYQISNV RASISSSRETDEFMSKKLKKYVSVPCACAILVYLFTMQHYGSHKIGFIFAPIVILWLL LIGGVGIYNIVHCDPKIICAISPTYMYTFVKNISVESWRALGSVILCVAGSEAMFADL GHFSMKSIKAINLAAFISHALSPKNNSDVPEDYNHLYKSVPKHVHHVFIILSLLASAI GSQATITACFSIINQCHALGCFPRVKVIHTSSKIHGQVYIPDVNWIVMVLSIGVTIGF HDIVRIGNASSMALVSGMLVTTCLMSLVIALYWEKSLLASACFLMFFGSIEPMYLSSS MLNFHKGAWYLVVLLVLSLTIMVAWHYGAMKKYEFDLENKLSMEWLTNLSPGLGVSRV PGIGFIYTDIVKGIPAFFSHFITNLLAFHQVLIFVSFKSLPVPYVSPDRRYLIGRVGP REYKIYRCIVRYGYCDHIRDTDDFEEQIIGSIGEFISLEEHHFESLMSPEGRMIVVGR HLPEESALISLHDTYLGMGGAGSANAEPQMKVRSTVGDADNEGKRKKKVQFMLPTNSP KMRVPVREELQELINARESGTAYFLGQSHLAVRNGSNLLKQFLIMTYVFFDKNCREPH VALNIPHAALVEVGMVYTI" mobile_element 8067674..8070773 /note="source:CACAO_M_S_E17711_F51_scaffold_3 1 3100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8072321..8072533 /note="source:scaffold_1_CACTA_0006 2464 2695" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8072717..8073781) /note="source:CACAO_M_S_E118737_F207_scaffold_9 2271 3344" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8075439..8075805) /note="source:CACAO_M_E59093_F12_scaffold_9 7258 7625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8077533..8077598) /note="source:CACAO_M_E5627_F4_scaffold_2 2179 2244" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8079853..8083677) /note="source:scaffold_5_CACTA_0613 6994 10867" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8083678..8084507) /note="source:INTACT365_F17_scaffold_9-int 5433 6248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8084456..8084717 /note="source:INTACT505_F28_scaffold_3-int 14218 14480" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8084497..8085968) /note="source:INTACT365_F17_scaffold_9-int 3522 4961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8086061..8086098 /note="source:CACAO_M_E1841_F5_scaffold_1 24822 24861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8086095..8086901 /note="source:CACAO_M_E1841_F5_scaffold_1 25802 26345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8086893..8087596) /note="source:CACAO_M_E1841_F5_scaffold_1 25802 26507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8087593..8088389) /note="source:CACAO_M_E1841_F5_scaffold_1 22170 22973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8088461..8088760 /note="source:scaffold_5_CACTA_0596 2390 2692" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8089649..8090009) /note="source:CACAO_M_S_E4787_F60_scaffold_1 3891 4232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8090010..8090117) /note="source:scaffold_2_CACTA_0253 8080 8532" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8091683..8091956) /note="source:INTACT505_F28_scaffold_3-int 10777 11055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8093444..8096210 /note="source:CACAO_M_E12820_F369_scaffold_3 1 2736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8097115..8097235) /note="source:INTACT640_F60_scaffold_2-int 7075 7200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8101141..8104453) /note="source:scaffold_2_CACTA_0253 5714 8183" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8104582..8104667 /note="source:scaffold_5_CACTA_0596 15489 15574" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8106812..8115533 /note="source:INTACT254_F60_scaffold_3-int 1 8722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8115538..8116899) /note="source:INTACT714_F310_scaffold_9-int 599 1970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8115873..8117656) /note="source:scaffold_2_CACTA_0276 6399 8179" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8120036..8122602) /note="source:scaffold_2_CACTA_0263 2002 4628" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8122466..8122653 /note="source:CACAO_M_E11054_F12_scaffold_2 12866 13052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8122805..8124767 /note="source:scaffold_1_CACTA_0016 13519 15456" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8126404..8129731 /note="source:CACAO_M_S_E14932_F233_scaffold_2 1 3335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8129732..8132386) /note="source:INTACT597_F267_scaffold_2-int 10234 13001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8132379..8132424 /note="source:INTACT223_F175_scaffold_5-int 6201 6245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8132387..8132958) /note="source:CACAO_M_S_E101631_F270_scaffold_9 12549 13118" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8132959..8133730 /note="source:CACAO_M_E12833_F369_scaffold_3 1 772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8134582..8135685 /note="source:CACAO_M_E12833_F369_scaffold_3 773 1876" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8135686..8137657 /note="source:CACAO_M_E42691_F9_scaffold_5 3895 5913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8137580..8137668) /note="source:INTACT518_F239_scaffold_2-int 6878 6966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8137657..8139328 /note="source:INTACT329_F199_scaffold_2-int 4710 6428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8138265..8142200) /note="source:INTACT597_F267_scaffold_2-int 6652 14120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8142201..8146115) /note="source:CACAO_M_S_E84376_F22_scaffold_6 11649 15521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8146116..8149258 /note="source:CACAO_M_S_E14932_F233_scaffold_2 1 3083" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8151753..8158547) /locus_tag="TCM_012988" /note="dbxref CacaoGD:Thecc1EG012988" mRNA complement(join(8151753..8152024,8152145..8152321, 8158523..8158547)) /locus_tag="TCM_012988" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(8151927..8152024,8152145..8152310)) /locus_tag="TCM_012988" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21438.1" /translation="MAPKRERSSASGFSYRSKFVSMDVVTRDNNSLVNKVPIQEKGFD KALICYLGIQARKQVSFHSQAINDFYETLNIEDDGYGQYLREH" mobile_element 8158231..8160788 /note="source:CACAO_M_E23512_F28_scaffold_4 2527 5037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8161027..8161128 /note="source:CACAO_M_E70891_F369_scaffold_10 12284 12384" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8161059..8161154) /note="source:CACAO_M_S_E86334_F233_scaffold_7 1 97" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8161447..8200697) /locus_tag="TCM_012991" /note="dbxref CacaoGD:Thecc1EG012991" mRNA complement(join(8161447..8161456,8179169..8179553, 8180009..8180393,8180553..8180683,8200117..8200697)) /locus_tag="TCM_012991" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" mobile_element complement(8164952..8167230) /note="source:CACAO_M_E33018_F264_scaffold_4 1 2286" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8168238..8168369 /note="source:scaffold_8_CACTA_0860 588 722" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8168518..8168632) /note="source:INTACT414_F210_scaffold_5-int 1691 1806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8168702..8171200) /note="source:CACAO_M_E23512_F28_scaffold_4 2524 5045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8171225..8171351) /note="source:INTACT19F_F94_scaffold_1-int 15544 15674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8172183..8172272) /note="source:scaffold_8_CACTA_0860 500 589" /mobile_element_type="transposon:TIR/CACTA" gene 8173032..8202082 /locus_tag="TCM_012992" /note="dbxref CacaoGD:Thecc1EG012992" mRNA join(8173032..8173188,8174043..8174286,8174945..8175052, 8200929..8201069,8201348..8202082) /locus_tag="TCM_012992" /product="KNOX meinox, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s04030.1" /inference="similar to AA sequence:Phytozome:Glyma09g30330.1" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc881t5_C1" CDS join(8174152..8174286,8174945..8175052,8200929..8201069, 8201348..8201416) /locus_tag="TCM_012992" /codon_start=1 /product="KNOX meinox, putative" /protein_id="EOY21440.1" /db_xref="Phytozome:Glyma09g30330.1" /translation="METKRNTSSGEKEEEEEDDDELLKTRISAHPLYGRLVENHLNCL KVGGIADSGRNRQTNQRKAGYSPCSSMANQSELDLFMEAYCSALGKLKEAMEEPHQET VAFINGMHSQLRELARTNPQSPDVFLATEMNNSNWSRDQQKRESNAVE" CDS complement(join(8179173..8179553,8180009..8180393, 8180553..8180611)) /locus_tag="TCM_012991" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21439.1" /translation="MVIDGRMVLVKEANVLEGKSAIGSLHLGCLIKGLKEGLEMQGVE VKIQSLDGYYLLITFFDSKMMKVLTESYLNCFKPWLSNLVAYNYNVVQQEMFCWVRLD EISFQIWHLNSFKALGDRWDEFVKPDANTMALSRLDYGRILFKVKSIRTNLSWSTGRE EVDILAQKFCPDEHVFEYDEDNDMFAIDRVNWESNKEANLQLMLFVREKMYDGDAEVV SSVEEVTAVERLRRKPRSKKGSNKGYSKWGAYKGDRVLWSSKWSKDLTDDLNRESE" mobile_element 8181183..8183400 /note="source:CACAO_M_E5899_F5_scaffold_2 19644 21828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8182160..8184203) /note="source:CACAO_M_E3248_F5_scaffold_1 1653 3666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8189085..8189150 /note="source:scaffold_2_CACTA_0262 4046 4112" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8189815..8189894) /note="source:CACAO_M_E12221_F121_scaffold_3 7494 7563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8190453..8199164 /note="source:INTACT686_F300_scaffold_3-int 1 8712" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(8201677..8207397) /locus_tag="TCM_012994" /note="dbxref CacaoGD:Thecc1EG012994" mRNA complement(join(8201677..8202301,8202427..8202536, 8203793..8203979,8204068..8204180,8205291..8205461, 8205547..8205810,8206692..8207096,8207286..8207295)) /locus_tag="TCM_012994" /product="Pyrimidine 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008478001" /inference="similar to AA sequence:Phytozome:Glyma07g11890.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06121t00001" CDS complement(join(8202145..8202301,8202427..8202536, 8203793..8203979,8204068..8204180,8205291..8205461, 8205547..8205810,8206692..8206970)) /locus_tag="TCM_012994" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pyrimidine 1 isoform 1" /protein_id="EOY21441.1" /db_xref="Phytozome:Glyma07g11890.1" /db_xref="TAIR:AT3G17810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N381" /translation="MASLNFTQLGHKSSNSFAEFALTRHAPPSFTRPTRVGFKVFASD SQAEPDLSVCVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVI NVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKEEYPDRILIASI MEEYDKAAWEELIDRVEQTGIDAIEINFSCPHGMPERKMGAAVGQDCALLEEVCGWIN AKATVPVWAKMTPNITDITQPARVALSSGCEGVSAINTIMSVMGINLDTLRPEPCVEG YSTPGGYSCKAIHPIALAKVMSIAKMMKLEFNDKEYSLSGIGGVEKGDDAAEFILLGA DTVQVCTGVMMHGYGLVKQLCAELKDFMKKHNFSSINDFRGASLQYFTTHTDLVRRQK EAIQKRKAVKKGLQSDKDWTGDGFVKETESMVSN" mRNA complement(join(<8202441..8202536,8203793..8203979, 8204068..8204180,8205291..8205461,8205565..8205810, 8206692..8207096,8207286..8207397)) /locus_tag="TCM_012994" /product="Pyrimidine 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008478001" /inference="similar to AA sequence:Phytozome:Glyma07g11890.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc881t4_C1; inference alignment:Newbler:10:TSA:cgbaP2_g06121t00001" CDS complement(join(<8202441..8202536,8203793..8203979, 8204068..8204180,8205291..8205461,8205565..8205810, 8206692..8206970)) /locus_tag="TCM_012994" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pyrimidine 1 isoform 3" /protein_id="EOY21443.1" /db_xref="Phytozome:Glyma07g11890.1" /db_xref="TAIR:AT3G17810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N381" /translation="MASLNFTQLGHKSSNSFAEFALTRHAPPSFTRPTRVGFKVFASD SQAEPDLSVCVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVI NVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKEEYPDRILIASI MEEYDKAAWEELIDRDAIEINFSCPHGMPERKMGAAVGQDCALLEEVCGWINAKATVP VWAKMTPNITDITQPARVALSSGCEGVSAINTIMSVMGINLDTLRPEPCVEGYSTPGG YSCKAIHPIALAKVMSIAKMMKLEFNDKEYSLSGIGGVEKGDDAAEFILLGADTVQVC TGVMMHGYGLVKQLCAELKDFMKKHNFSSI" mRNA complement(join(8203260..8203406,8203793..8203979, 8204068..8204180,8205291..8205461,8205547..8205810, 8206692..8207096,8207286..8207397)) /locus_tag="TCM_012994" /product="Pyrimidine 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008478001" /inference="similar to AA sequence:Phytozome:Glyma07g11890.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc881t9_C1; inference alignment:Newbler:10:TSA:cgbaP2_g06121t00001" CDS complement(join(8203359..8203406,8203793..8203979, 8204068..8204180,8205291..8205461,8205547..8205810, 8206692..8206970)) /locus_tag="TCM_012994" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pyrimidine 1 isoform 2" /protein_id="EOY21442.1" /db_xref="Phytozome:Glyma07g11890.1" /db_xref="TAIR:AT3G17810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N381" /translation="MASLNFTQLGHKSSNSFAEFALTRHAPPSFTRPTRVGFKVFASD SQAEPDLSVCVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVI NVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKEEYPDRILIASI MEEYDKAAWEELIDRVEQTGIDAIEINFSCPHGMPERKMGAAVGQDCALLEEVCGWIN AKATVPVWAKMTPNITDITQPARVALSSGCEGVSAINTIMSVMGINLDTLRPEPCVEG YSTPGGYSCKAIHPIALAKVMSIAKMMKLEFNDKEYSLSGIGGVEKGDDAAEFILLGA DTVQVMSFLLGWEHIIFHT" gene 8207397..8208082 /locus_tag="TCM_012996" /note="dbxref CacaoGD:Thecc1EG012996" mRNA join(8207397..8207421,8207602..8208082) /locus_tag="TCM_012996" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc881t6" CDS join(8207401..8207421,8207602..8207745) /locus_tag="TCM_012996" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21444.1" /translation="MKNRTGQAKGNLTFCFLAEDSSANKSAGKLLQTSGGGGAGSCSV TFFFQINFLC" mobile_element 8208379..8213036 /note="source:CACAO_M_E12842_F183_scaffold_3 1 4658" /mobile_element_type="retrotransposon:LTR/Copia" gene 8212085..8215538 /locus_tag="TCM_012998" /note="dbxref CacaoGD:Thecc1EG012998" mRNA join(8212085..8212852,8215287..8215538) /locus_tag="TCM_012998" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028126t1" /inference="similar to AA sequence:Phytozome:Glyma07g34840.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage" CDS 8212150..8212629 /locus_tag="TCM_012998" /note="paralog of Thecc1EG028126t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21445.1" /db_xref="Phytozome:Glyma07g34840.1" /translation="MQVPNDQHIIAAKRILRYLKKTEFYGIHYTKSTKFALCGYTDSD FAGSNEDAKNTSGYLFTLGNGHFSWNSHKQSVVAQSSVESKYVVAAEAANQAFWLRKL LMDIKFEQKFPTNLFIDNKSAIAIVKNPIWHGKTKHINVKYHAITDTMEKNKINVQY" mobile_element complement(8213819..8213859) /note="source:CACAO_M_E12297_F14_scaffold_3 1158 1181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8213860..8215686 /note="source:CACAO_M_E12845_F210_scaffold_3 1 1820" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8215687..8216337 /note="source:INTACT1373F_F385_scaffold_8-int 1143 1828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8215688..8216412) /note="source:CACAO_M_E12297_F14_scaffold_3 19972 20706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8216416..8219359 /note="source:CACAO_M_E12846_F72_scaffold_3 1 2944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8220764..8221548) /note="source:CACAO_M_E12297_F14_scaffold_3 4562 5345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8221549..8223595 /note="source:CACAO_Mariner_E180_scaffold_6 6249 8287" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 8222806..8223774 /note="source:INTACT255_F60_scaffold_8-int 5366 6372" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8223828..8224356) /note="source:INTACT215F_F14_scaffold_3-int 9577 10107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8234110..8234594) /note="source:scaffold_9_CACTA_0937 6413 6936" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8237439..8238599) /note="source:CACAO_M_E5899_F5_scaffold_2 21578 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8238744..8239550) /note="source:INTACT215F_F14_scaffold_3-int 10380 11160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8239706..8240232) /note="source:INTACT215F_F14_scaffold_3-int 9580 10107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8240210..8240834) /note="source:CACAO_M_S_E15589_F14_scaffold_2 3999 4616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8240831..8243715 /note="source:INTACT298_F14_scaffold_10-int 10488 13371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8247023..8248865 /note="source:CACAO_M_S_E17754_F49_scaffold_3 1 1843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8249072..8249968) /note="source:CACAO_M_E59164_F88_scaffold_9 1883 2742" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8249969..8251223 /note="source:CACAO_M_E33678_F15_scaffold_4 1 1256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8255719..8256731 /note="source:CACAO_M_E50697_F15_scaffold_7 1962 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8256733..8258613 /note="source:CACAO_M_S_E66657_F76_scaffold_5 6643 8525" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8262057..8263341) /locus_tag="TCM_013003" /note="dbxref CacaoGD:Thecc1EG013003" mRNA complement(8262057..8263341) /locus_tag="TCM_013003" /product="MAP kinase kinase 9" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010625t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05400.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc676t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc676t7_C2" CDS complement(8262111..8263073) /locus_tag="TCM_013003" /note="paralog of Thecc1EG010625t1" /codon_start=1 /product="MAP kinase kinase 9" /protein_id="EOY21446.1" /db_xref="Phytozome:POPTR_0015s05400.1" /db_xref="TAIR:AT1G73500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FX43" /translation="MAVVRERRQVNLRLPLPDLSDRCSRFPLPLPPSASTTAAAASAS VTISQTELEKLQVLGHGNGGTVYKVQHKRTSKIYALKVVNGDSDVTVHRQVSREMEIL RRTDSPHIVRCYGTYVKPSGDVAILMEYMDAGTLDTLLRTRGTFSEPELAHITRQILK GLTYLHAHKIIHRDLKPSNLLVNKNMEVKIADFGVSKIMSRRLDPCNSYVGTCAYMSP ERFDPDAHGGNYDGYLGDIWSLGLTLMELYVGHFPFLSPDQRPDWATLMCAICFGDPP TLPQGASDEFRSFIECCLQKESSKRWTASQLLDHPFLRSHPTSD" mobile_element 8266729..8269676 /note="source:CACAO_M_E12861_F15_scaffold_3 1 2948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8270699..8273678 /note="source:CACAO_M_E12862_F143_scaffold_3 1 2980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8275393..8276100) /note="source:INTACT189_F49_scaffold_5-int 17863 18572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8277050..8278094 /note="source:INTACT280_F60_scaffold_5-int 147 1207" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8278123..8278270 /note="source:INTACT280_F60_scaffold_5-int 18874 19023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8278743..8281743 /note="source:CACAO_M_E12864_F277_scaffold_3 1 3001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8281534..8281766) /note="source:CACAO_M_E52239_F256_scaffold_7 8131 8364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8282689..8282830 /note="source:CACAO_M_S_E83372_F14_scaffold_6 103 213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8282727..8282834) /note="source:CACAO_M_S_E85177_F5_scaffold_7 866 987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8284269..8284290 /note="source:scaffold_3_CACTA_0382 3326 3342" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8284291..8285551) /note="source:INTACT139F_F15_scaffold_2-int 9252 10511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8293546..8293936) /note="source:CACAO_M_E49027_F15_scaffold_6 2578 2968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8294038..8296588 /note="source:CACAO_M_S_E89836_F15_scaffold_8 431 2978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8298259..8303612 /note="source:CACAO_M_S_E17765_F76_scaffold_3 1 5354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8304445..8317475 /note="source:CACAO_M_S_E17765_F76_scaffold_3 5355 18385" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8320345..8341621 /locus_tag="TCM_013007" /note="dbxref CacaoGD:Thecc1EG013007" mRNA join(8320345..8320977,8323743..8323967,8324066..8324129, 8324419..8324758,8325450..8325745,8326953..8327033, 8329847..8329945,8334388..8334612,8334818..8335006, 8337561..8337636,8337751..8338045,8338982..8339120, 8340573..8340596) /locus_tag="TCM_013007" /product="STELAR K+ outward rectifier isoform 2" /inference="alignment:exonerate- protein:2:ricco:28613.m000143" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027138t2" /inference="similar to AA sequence:ricco:28613.m000143" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1228t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1213t5" mRNA join(8320495..8320665,8320737..8320977,8323743..8323967, 8324066..8324129,8324419..8324758,8325450..8325745, 8326953..8327033,8329847..8329945,8334388..8334612, 8334818..8335006,8337561..8337636,8337751..8338045, 8338999..8339120,8340573..8341621) /locus_tag="TCM_013007" /product="STELAR K+ outward rectifier isoform 1" /inference="alignment:exonerate- protein:2:ricco:28613.m000143" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027138t2" /inference="similar to AA sequence:ricco:28613.m000143" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1213t5" mRNA join(8320636..8320977,8323743..8323967,8324066..8324129, 8324419..8324758,8325450..8325745,8326953..8327033, 8329847..8329945,8334388..8334612,8334818..8335006, 8337561..8337636,8337751..8338045,8338999..8339120, 8340573..>8340679) /locus_tag="TCM_013007" /product="STELAR K+ outward rectifier isoform 3" /inference="alignment:exonerate- protein:2:ricco:28613.m000143" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027138t2" /inference="similar to AA sequence:ricco:28613.m000143" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1213t5; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1213t5" CDS join(8320754..8320977,8323743..8323967,8324066..8324129, 8324419..8324758,8325450..8325745,8326953..8327033, 8329847..8329945,8334388..8334612,8334818..8335006, 8337561..8337636,8337751..8338045,8338999..8339120, 8340573..8340802) /locus_tag="TCM_013007" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28613.m000143; paralog of Thecc1EG027138t2" /codon_start=1 /product="STELAR K+ outward rectifier isoform 1" /protein_id="EOY21447.1" /db_xref="TAIR:AT3G02850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8S6" /translation="MMREGERGNRGKESEDEESEEAKLREESRKPLWKRVLSLMRNEQ LSSWSGVGRDIVSGSRGASPPHGFIIHPDDWWYVLWTHFILVWAIYSSFFTPLEFGFF RGLPENLFLLDIAGQIAFLFDIVVRFFLAYRDTHSYRMVYDRKLIALRYLKSRFIVDF LGCLPWDAIYKVCGRKEPIRYMLWIRLSRALRVTEFFEKLEKDIRINYLFTRIVKLLV VEYYCTHAAGCIFYYLATTVPPSKEGYTWIGSLQMGEYHFSNFREIDIWKRYVVSLYF AVVTMVTVGYGDIHAVNVREMIFVMIYVSLDMILGAYLLGNMAALIVKGSKTERFRDK MTDLIKYMNRNNLEKQISKEIKGHLKLQYDRSYTEATVLQDIPASIRTKISQKLYEPF IKEVSLFKGCSTGFIKLIANKVHEEFFLPGEVIIEQGNVVDQLYIVCHGKLVEVGRGK NDETGEFIADLQTFSSFGEVSFLCNTPQPYTIRVRELCRVLRLDKQSFMEIVEINFSD GRIILNNLLEGKDSNMQNEILESDVTLYIGKLESELAARLNCAAYNGDLYRLKRLIGA GADPNKTDYDGRSPLHIAASKGYEDITSFLIEQNVDINISDKFGNTPLLESIKHGHDQ VASLLVNAGALLAMDDAGGFLCMTVARRDLDLLKRVLAGGIDPNAKSYDYRTPLHVAA SEGLYLAAKMLIEAGASVFSKDRWGNTPLEEARIAGNRNLIGLLEAARASQMTEFSDC LRQIQGKMRKKKCTVYPCHPWHQEERRQGVVLWVPESMEELIKAAKEQLECSHGCCIL SEDGGKILDANMISNDQKLYLVD" CDS join(8320754..8320977,8323743..8323967,8324066..8324129, 8324419..8324758,8325450..8325745,8326953..8327033, 8329847..8329945,8334388..8334612,8334818..8335006, 8337561..8337636,8337751..8338045,8338999..8339120, 8340573..>8340679) /locus_tag="TCM_013007" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28613.m000143; paralog of Thecc1EG027138t2" /codon_start=1 /product="STELAR K+ outward rectifier isoform 3" /protein_id="EOY21449.1" /db_xref="TAIR:AT3G02850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8S6" /translation="MMREGERGNRGKESEDEESEEAKLREESRKPLWKRVLSLMRNEQ LSSWSGVGRDIVSGSRGASPPHGFIIHPDDWWYVLWTHFILVWAIYSSFFTPLEFGFF RGLPENLFLLDIAGQIAFLFDIVVRFFLAYRDTHSYRMVYDRKLIALRYLKSRFIVDF LGCLPWDAIYKVCGRKEPIRYMLWIRLSRALRVTEFFEKLEKDIRINYLFTRIVKLLV VEYYCTHAAGCIFYYLATTVPPSKEGYTWIGSLQMGEYHFSNFREIDIWKRYVVSLYF AVVTMVTVGYGDIHAVNVREMIFVMIYVSLDMILGAYLLGNMAALIVKGSKTERFRDK MTDLIKYMNRNNLEKQISKEIKGHLKLQYDRSYTEATVLQDIPASIRTKISQKLYEPF IKEVSLFKGCSTGFIKLIANKVHEEFFLPGEVIIEQGNVVDQLYIVCHGKLVEVGRGK NDETGEFIADLQTFSSFGEVSFLCNTPQPYTIRVRELCRVLRLDKQSFMEIVEINFSD GRIILNNLLEGKDSNMQNEILESDVTLYIGKLESELAARLNCAAYNGDLYRLKRLIGA GADPNKTDYDGRSPLHIAASKGYEDITSFLIEQNVDINISDKFGNTPLLESIKHGHDQ VASLLVNAGALLAMDDAGGFLCMTVARRDLDLLKRVLAGGIDPNAKSYDYRTPLHVAA SEGLYLAAKMLIEAGASVFSKDRWGNTPLEEARIAGNRNLIGLLEAARASQMTEFSDC LRQIQGKMRKKKCTVYPCHPWHQEERRQGVVLWVPESMEEL" CDS join(8320754..8320977,8323743..8323967,8324066..8324129, 8324419..8324758,8325450..8325745,8326953..8327033, 8329847..8329945,8334388..8334612,8334818..8335006, 8337561..8337636,8337751..8338045,8338982..8339033) /locus_tag="TCM_013007" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28613.m000143; paralog of Thecc1EG027138t2" /codon_start=1 /product="STELAR K+ outward rectifier isoform 2" /protein_id="EOY21448.1" /db_xref="TAIR:AT3G02850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8S6" /translation="MMREGERGNRGKESEDEESEEAKLREESRKPLWKRVLSLMRNEQ LSSWSGVGRDIVSGSRGASPPHGFIIHPDDWWYVLWTHFILVWAIYSSFFTPLEFGFF RGLPENLFLLDIAGQIAFLFDIVVRFFLAYRDTHSYRMVYDRKLIALRYLKSRFIVDF LGCLPWDAIYKVCGRKEPIRYMLWIRLSRALRVTEFFEKLEKDIRINYLFTRIVKLLV VEYYCTHAAGCIFYYLATTVPPSKEGYTWIGSLQMGEYHFSNFREIDIWKRYVVSLYF AVVTMVTVGYGDIHAVNVREMIFVMIYVSLDMILGAYLLGNMAALIVKGSKTERFRDK MTDLIKYMNRNNLEKQISKEIKGHLKLQYDRSYTEATVLQDIPASIRTKISQKLYEPF IKEVSLFKGCSTGFIKLIANKVHEEFFLPGEVIIEQGNVVDQLYIVCHGKLVEVGRGK NDETGEFIADLQTFSSFGEVSFLCNTPQPYTIRVRELCRVLRLDKQSFMEIVEINFSD GRIILNNLLEGKDSNMQNEILESDVTLYIGKLESELAARLNCAAYNGDLYRLKRLIGA GADPNKTDYDGRSPLHIAASKGYEDITSFLIEQNVDINISDKFGNTPLLESIKHGHDQ VASLLVNAGALLAMDDAGGFLCMTVARRDLDLLKRVLAGGIDPNAKSYDYRTPLHVAA SEGLYLAAKMLIEAGASVFSKDSPLLFIDGEILHLKKPV" mobile_element complement(8341466..8341761) /note="source:scaffold_1_CACTA_0009 13561 13837" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8341709..8345315 /note="source:CACAO_M_E33977_F20_scaffold_4 5407 9119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8345315..8345451 /note="source:scaffold_9_CACTA_0922 6889 7031" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8345316..8347172) /note="source:CACAO_Mutator_E1888_scaffold_9 3078 4979" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8347173..8347514) /note="source:scaffold_1_CACTA_0009 6996 7315" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8347515..8348712) /note="source:CACAO_Mutator_E1888_scaffold_9 1849 3077" /mobile_element_type="transposon:TIR/Mutator" mobile_element 8348173..8352378 /note="source:CACAO_M_E33977_F20_scaffold_4 12853 16542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8353200..8353804 /note="source:INTACT47_F12_scaffold_3-int 5913 6524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8353802..8354747 /note="source:CACAO_Again_on_E73_scaffold_3 1 946" /mobile_element_type="transposon:TIR/hAT" mobile_element 8354750..8354978 /note="source:INTACT414_F210_scaffold_5-int 9773 9987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8355017..8355157 /note="source:INTACT414_F210_scaffold_5-int 10166 10306" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8355236..8355536 /note="source:INTACT414_F210_scaffold_5-int 10295 10516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8360482..8360537 /note="source:scaffold_8_CACTA_0867 17688 17743" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8360792..8360871 /note="source:scaffold_8_CACTA_0867 18205 18289" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8361354..8361413 /note="source:CACAO_M_E5800_F12_scaffold_2 12561 12619" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8361397..8361460) /note="source:CACAO_M_S_E4413_F3_scaffold_1 2986 3047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8362842..8364341) /note="source:CACAO_M_S_E18748_F17_scaffold_3 1 1496" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8366078..8366121) /note="source:CACAO_M_E42395_F3_scaffold_5 5954 5996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8367002..8367066) /note="source:CACAO_M_S_E16543_F3_scaffold_2 4805 4869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8368890..8368942 /note="source:scaffold_3_CACTA_0384 5554 5606" /mobile_element_type="transposon:TIR/CACTA" gene complement(8369532..8370197) /locus_tag="TCM_013011" /note="dbxref CacaoGD:Thecc1EG013011" mRNA complement(join(8369532..8370001,8370091..8370197)) /locus_tag="TCM_013011" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(8369786..8370001,8370091..8370147)) /locus_tag="TCM_013011" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21450.1" /translation="MWGVPDQSTPLQPCHGNNKCKHVTNEFYSNYYKTWSWVEGYAVP IHPVRHPNDWEISPDVKQIAFCQYLGKVKQKDLKRRRIPSIEEDSR" mobile_element complement(8372493..8373201) /note="source:scaffold_5_CACTA_0603 5848 6574" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8373200..8374150) /note="source:CACAO_M_S_E15657_F60_scaffold_2 641 1593" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8375586..8380180 /locus_tag="TCM_013012" /note="dbxref CacaoGD:Thecc1EG013012" mRNA join(8375586..8375839,8375926..8376008,8379910..8379965, 8380059..8380180) /locus_tag="TCM_013012" /product="B-cell receptor-associated 31-like" /inference="alignment:exonerate-protein:2:frave:gene09338" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011021t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03970.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1865t5" CDS join(8375668..8375839,8375926..8376008,8379910..8379965, 8380059..8380137) /locus_tag="TCM_013012" /note="paralog of Thecc1EG011021t1" /codon_start=1 /product="B-cell receptor-associated 31-like" /protein_id="EOY21451.1" /db_xref="Phytozome:POPTR_0012s03970.1" /db_xref="TAIR:AT1G48440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N383" /translation="MALQWMILTYVVAAEAAVALLLTLPYPKLLKNRLVSLISLILQP ALFIVPFAGFQLLDIYWKNEHRLMCTSEICTAAERDRYEKSVFKAQRNVILCATACLL YWCIYRICKYNKEIQSLEEVEKRYKNK" mobile_element complement(8378030..8378084) /note="source:CACAO_Mutator_E1149_scaffold_5 4717 4771" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8378454..8378489) /note="source:CACAO_M_S_E32860_F3_scaffold_4 1237 1270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8382986..8384598) /note="source:CACAO_M_E84368_F4_scaffold_10 4518 6138" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8384571..8384727 /note="source:CACAO_M_E84368_F4_scaffold_10 12570 12725" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8384728..8387486 /note="source:CACAO_M_S_E101192_F79_scaffold_9 1 2778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8387487..8393084 /note="source:CACAO_M_E84368_F4_scaffold_10 5652 11276" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8393072..8393114 /note="source:CACAO_M_E84368_F4_scaffold_10 11589 11631" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8393110..8393556) /note="source:CACAO_M_E84368_F4_scaffold_10 11148 11590" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8393555..8393878 /note="source:CACAO_M_E84368_F4_scaffold_10 11268 11590" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8393866..8393970) /note="source:CACAO_M_E84368_F4_scaffold_10 11535 11639" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8393974..8395655) /note="source:CACAO_M_E86046_F3_scaffold_12 1 1698" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8396772..8398863) /locus_tag="TCM_013015" /note="dbxref CacaoGD:Thecc1EG013015" mRNA complement(8396772..8398863) /locus_tag="TCM_013015" /product="ARM repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011256t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03960.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1646t1" CDS complement(8397479..8398789) /locus_tag="TCM_013015" /note="paralog of Thecc1EG011256t1" /codon_start=1 /product="ARM repeat superfamily protein" /protein_id="EOY21452.1" /db_xref="Phytozome:POPTR_0012s03960.1" /db_xref="TAIR:AT5G37490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N385" /translation="MFNWRRRKTTGRHGEKRRQQQQQQHKELEIPRHFLCPITLDLMK DPVTLSSGITYDRESIETWLEDGNFTCPVTNQLLRSFDQIPNHSLRKMIQDWCVENGK YGVERIPTPRIPVTSEEVSEILFAIMDSNRRLDQCGCLDSVQKIKKWCMESERNRRCI TANETAGVLAAAFDAFACDSFERNANVLEEILCVLNWMFPLDGEALEHLGSQSSLRCM VWFLKWRDLSVKQNSMAALKELLSCDQQYGEGLAAIDGVNEMLFNFIKDPISPSITKA SLMVIFHMVSSCSSSEKIKSEFLDMGLVSLLLETIVESERSLCERALGVLDKLCDSKQ GREVAYNNALAMPVLVKKILRVSELATEYSVSTIWKLSKDEERVLIEALQVGAFQKLL LLIQVGCGDETKEKATELLKLLNPYRAGLECIDSVDFKSLKRSF" mobile_element complement(8399689..8399769) /note="source:scaffold_3_CACTA_0396 899 981" /mobile_element_type="transposon:TIR/CACTA" gene 8400585..8403311 /locus_tag="TCM_013016" /note="dbxref CacaoGD:Thecc1EG013016" mRNA join(8400585..8400748,8402588..8403311) /locus_tag="TCM_013016" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS join(8400656..8400748,8402588..8402824) /locus_tag="TCM_013016" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21453.1" /translation="MPTPPSIQYAALMQSVKETQLMLVLFPIPSSNFQKKLKNLINIM TSSHRVLFNIMTSFSRCCFIWSPSPSLRCHICQFLLFPCHLSLLFNLSRFVLFLCKLS LSLTLIR" mobile_element complement(8401037..8401611) /note="source:INTACT135F_F90_scaffold_2-int 13350 13930" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8403264..8403333 /note="source:scaffold_3_CACTA_0396 881 950" /mobile_element_type="transposon:TIR/CACTA" gene complement(8403336..8414860) /locus_tag="TCM_013017" /note="dbxref CacaoGD:Thecc1EG013017" mRNA complement(join(8403336..8404784,8404891..8405060, 8407442..8407686,8409390..8409567,8411593..8411778, 8411878..8411982,8413248..8413385,8413473..8414860)) /locus_tag="TCM_013017" /product="Extra-large GTP-binding protein 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g11970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016614t2" /inference="similar to AA sequence:ricco:28613.m000141" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2496t2" CDS complement(join(8404202..8404784,8404891..8405060, 8407442..8407686,8409390..8409567,8411593..8411778, 8411878..8411982,8413248..8413385,8413473..8414462)) /locus_tag="TCM_013017" /note="dbxref ricco:28613.m000141; paralog of Thecc1EG016614t2" /codon_start=1 /product="Extra-large GTP-binding protein 3" /protein_id="EOY21454.1" /db_xref="TAIR:AT1G31930.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C516" /translation="MAASTEAEEENKAWEDVIRKMLPVGAPLPDEDHLDYSIAVEYEG PPIPYDVPRVDPLDLGSLAASDLSSIPVAAPIPTKPKFSSFKKNRNNIRNGSPLESQR PSSASRSQIDSRNGDYDSEIEVDKSPPPPLPQPQPVTVDKKNVVVTFNTPKDSETEEE EDDGYSSSQSCVADAAASVGNVETRGIKKKEKKRGICSRCEKGSRLKEREACLVCDAR YCSNCLLKAMGSMPEGRKCVGCIGKPIDEAKRSRLGKSSRILRTVCSALEVKQIMKAE KECAANQLRPEQLVVNGRQLTPEELAEVLGCPLPPQKLKPGKYWYDKDSGLWGKEGEK PDRIISSKLNIGGKMKKDASNGNTRVYINGREITKIELRVLKLANVQCPRDTHFWMYD DGSYEEEGQNNIKGKIWEKASTRFFCSLFSLPVPPANPHGPQEDPTTFSGRSVPEYLE QGRVQKLLLFGLEGSGTSTIFKQAKLLYGNGFSPEELQSIKLMIQSNMYKYLSVLLEG RERFEEEALLALRTTNFDTEESASGETVVDGSNQCIYSINQRFKHFSDWLLDIMAMGD LDTFFPAATREYAPIVDEIWKDPAIQETYKRSEELHHLPDVAKYFLDQAVEISSNEYE PSERDILYAEGVTQSNGLALIEFSFDDRSPMSEIYNENFECPPSLTKYQLIRINSKGL HDGCKWLEMFEDVRAVIFCVALSDYDEIWCRGTDPLCNKMLASRDMFESLVRHPSFRE TPFVLLLNKYDAFEDKINRVPLSTCEWFRDFSPLKPHHNNHALAQQAYYYMAVKFKEL YFSISGRKLFVSQTRARERASIDEAFKYIREVLKWDEEKDDNVYGINGDDSFYSTEMS SSPYIRHE" mobile_element 8415703..8427615 /note="source:CACAO_M_S_E17777_F2_scaffold_3 1 11913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8427697..8427787) /note="source:scaffold_4_CACTA_0482 7646 7739" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8429182..8448694 /note="source:INTACT505_F28_scaffold_3-int 1 19513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8454600..8454801) /note="source:scaffold_4_CACTA_0482 5687 5899" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8456504..8459620 /note="source:CACAO_M_E12878_F42_scaffold_3 1 3117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8460339..8460687 /note="source:CACAO_M_E36595_F87_scaffold_5 4567 4915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8460671..8463622) /note="source:CACAO_M_E10495_F87_scaffold_2 2467 5389" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8463607..8464446 /note="source:CACAO_M_S_E64023_F13_scaffold_5 18806 19647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8465557..8467023 /note="source:CACAO_M_E52662_F215_scaffold_7 13589 15080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8471178..8472266 /note="source:CACAO_M_E69283_F22_scaffold_9 1 1132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8472438..8474973) /note="source:INTACT466_F223_scaffold_2-int 2927 5352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8479395..8489253 /note="source:CACAO_M_E12891_F22_scaffold_3 1 9859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8489201..8489269) /note="source:INTACT199_F5_scaffold_6-int 10378 10441" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8491052..8497248) /locus_tag="TCM_013025" /note="dbxref CacaoGD:Thecc1EG013025" mRNA complement(join(8491052..8491436,8491986..8492126, 8492228..8492277,8492350..8492440,8492522..8492604, 8492754..8492818,8493412..8493495,8494294..8494359, 8494515..8494573,8494671..8494746,8495708..8495811, 8496542..8496576,8496692..8496748,8496841..8496899, 8496998..8497248)) /locus_tag="TCM_013025" /product="Alpha-galactosidase isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G08370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027241t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s14920.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc180t10" mRNA complement(join(8491293..8491436,8491986..8492126, 8492228..8492277,8492350..8492440,8492522..8492604, 8492754..8492818,8493412..8493495,8494294..8494359, 8494515..8494573,8494671..8494746,8495708..8495811, 8496542..8496576,8496841..8496899,8496998..8497226)) /locus_tag="TCM_013025" /product="Alpha-galactosidase isoform 5" /inference="alignment:exonerate- protein:2:TAIR:AT5G08370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027241t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s14920.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc180t5; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc180t10" mRNA complement(join(8491293..8491436,8491986..8492126, 8492228..8492277,8492350..8492440,8492522..8492604, 8492754..8492818,8493412..8493495,8494294..8494359, 8494515..8494573,8494671..8494746,8496542..8496576, 8496692..8496748,8496841..8496899,8496998..8497226)) /locus_tag="TCM_013025" /product="Alpha-galactosidase 2 isoform 6" /inference="alignment:exonerate- protein:2:TAIR:AT5G08370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027241t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s14920.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc180t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc180t10" mRNA complement(join(8491293..8491436,8491986..8492126, 8492228..8492277,8492350..8492440,8492522..8492604, 8492754..8492818,8493412..8493495,8494294..8494350, 8494515..8494573,8494671..8494746,8495708..8495811, 8496542..8496576,8496692..8496748,8496841..8496899, 8496998..8497226)) /locus_tag="TCM_013025" /product="Alpha-galactosidase isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G08370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027241t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s14920.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc180t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc180t10" mRNA complement(join(8491293..8491436,8491986..8492126, 8492228..8492440,8492522..8492604,8492754..8492818, 8493412..8493495,8494294..8494359,8494515..8494573, 8494671..8494746,8495708..8495811,8496542..8496576, 8496692..8496748,8496841..8496899,8496998..8497226)) /locus_tag="TCM_013025" /product="Alpha-galactosidase 2 isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT5G08370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027241t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s14920.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc180t8; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc180t10" CDS complement(join(8491350..8491436,8491986..8492126, 8492228..8492277,8492350..8492440,8492522..8492604, 8492754..8492818,8493412..8493495,8494294..8494359, 8494515..8494573,8494671..8494746,8495708..8495811, 8496542..8496576,8496841..8496899,8496998..8497179)) /locus_tag="TCM_013025" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG027241t1" /codon_start=1 /product="Alpha-galactosidase isoform 5" /protein_id="EOY21459.1" /db_xref="Phytozome:POPTR_0018s14920.1" /db_xref="TAIR:AT5G08370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P14749" /translation="MGDSSSAYLCLAVGLALVVWSVSNGDEVAAADRMVGRSSNSFQQ MRRKTFANGLGRTPPMGWNSWNHFGCDIEEKAIKETDDCWGEPGRDAKGNLVSKASKF PSGMKALAYYVHSKGLKLGIYSDAGTKTCSRTMPGSLDHEEQDAKTFASWGVDYLKYD NCENYGITPRERYHRMSEALLSTGRPIFFSICEWGREHPATWAPDIGNSWRTSGDVRD NWDSMIVRADRNDEWASYAGPGGWNDPDMLEVGNGGMTVEEYRSHFSIWAIAKAPLII GCDIRTMDNDTYEILSNEDVIAVNQDKLGVQGKKVKRDGHLEVWAGPLSDNKVAVVLW NRGSRNANVTALWSDIGLQPTVAVKARDLWTHSTEYSLKGQISAQLESHACKMYVLTP H" CDS complement(join(8491350..8491436,8491986..8492126, 8492228..8492277,8492350..8492440,8492522..8492604, 8492754..8492818,8493412..8493495,8494294..8494350, 8494515..8494573,8494671..8494746,8495708..8495811, 8496542..8496576,8496692..8496748,8496841..8496899, 8496998..8497179)) /locus_tag="TCM_013025" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG027241t1" /codon_start=1 /product="Alpha-galactosidase isoform 2" /protein_id="EOY21456.1" /db_xref="Phytozome:POPTR_0018s14920.1" /db_xref="TAIR:AT5G08370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P14749" /translation="MGDSSSAYLCLAVGLALVVWSVSNGDEVAAADRMVGRSSNSFQQ MRRKTFANGLGRTPPMGWNSWNHFGCDIEEKAIKETADAMEARGLAKLGYKYVNLDDC WGEPGRDAKGNLVSKASKFPSGMKALAYYVHSKGLKLGIYSDAGTKTCSRTMPGSLDH EEQDAKTFASWGVDYLKYDNCENYGITPRERMSEALLSTGRPIFFSICEWGREHPATW APDIGNSWRTSGDVRDNWDSMIVRADRNDEWASYAGPGGWNDPDMLEVGNGGMTVEEY RSHFSIWAIAKAPLIIGCDIRTMDNDTYEILSNEDVIAVNQDKLGVQGKKVKRDGHLE VWAGPLSDNKVAVVLWNRGSRNANVTALWSDIGLQPTVAVKARDLWTHSTEYSLKGQI SAQLESHACKMYVLTPH" CDS complement(join(8491350..8491436,8491986..8492126, 8492228..8492277,8492350..8492440,8492522..8492604, 8492754..8492818,8493412..8493495,8494294..8494359, 8494515..8494573,8494671..8494746,8495708..8495811, 8496542..8496576,8496692..8496748,8496841..8496899, 8496998..8497179)) /locus_tag="TCM_013025" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG027241t1" /codon_start=1 /product="Alpha-galactosidase isoform 1" /protein_id="EOY21455.1" /db_xref="Phytozome:POPTR_0018s14920.1" /db_xref="TAIR:AT5G08370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P14749" /translation="MGDSSSAYLCLAVGLALVVWSVSNGDEVAAADRMVGRSSNSFQQ MRRKTFANGLGRTPPMGWNSWNHFGCDIEEKAIKETADAMEARGLAKLGYKYVNLDDC WGEPGRDAKGNLVSKASKFPSGMKALAYYVHSKGLKLGIYSDAGTKTCSRTMPGSLDH EEQDAKTFASWGVDYLKYDNCENYGITPRERYHRMSEALLSTGRPIFFSICEWGREHP ATWAPDIGNSWRTSGDVRDNWDSMIVRADRNDEWASYAGPGGWNDPDMLEVGNGGMTV EEYRSHFSIWAIAKAPLIIGCDIRTMDNDTYEILSNEDVIAVNQDKLGVQGKKVKRDG HLEVWAGPLSDNKVAVVLWNRGSRNANVTALWSDIGLQPTVAVKARDLWTHSTEYSLK GQISAQLESHACKMYVLTPH" CDS complement(join(8491350..8491436,8491986..8492126, 8492228..8492440,8492522..8492604,8492754..8492818, 8493412..8493495,8494294..8494359,8494515..8494573, 8494671..8494746,8495708..8495811,8496542..8496576, 8496692..8496748,8496841..8496899,8496998..8497179)) /locus_tag="TCM_013025" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG027241t1" /codon_start=1 /product="Alpha-galactosidase 2 isoform 3" /protein_id="EOY21457.1" /db_xref="Phytozome:POPTR_0018s14920.1" /db_xref="TAIR:AT5G08370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P14749" /translation="MGDSSSAYLCLAVGLALVVWSVSNGDEVAAADRMVGRSSNSFQQ MRRKTFANGLGRTPPMGWNSWNHFGCDIEEKAIKETADAMEARGLAKLGYKYVNLDDC WGEPGRDAKGNLVSKASKFPSGMKALAYYVHSKGLKLGIYSDAGTKTCSRTMPGSLDH EEQDAKTFASWGVDYLKYDNCENYGITPRERYHRMSEALLSTGRPIFFSICEWGREHP ATWAPDIGNSWRTSGDVRDNWDSMIVRADRNDEWASYAGPGGWNDPDMLEVGNGGMTV EEYRSHFSIWAIAKAPLIIGCDIRTMDNDTYEILSNEDVIAVNQGKLIKLFETISDGF LWLKTMSLSTDKLGVQGKKVKRDGHLEVWAGPLSDNKVAVVLWNRGSRNANVTALWSD IGLQPTVAVKARDLWTHSTEYSLKGQISAQLESHACKMYVLTPH" CDS complement(join(8491350..8491436,8491986..8492126, 8492228..8492277,8492350..8492440,8492522..8492604, 8492754..8492818,8493412..8493495,8494294..8494359, 8494515..8494573,8494671..8494746,8496542..8496576)) /locus_tag="TCM_013025" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG027241t1" /codon_start=1 /product="Alpha-galactosidase 2 isoform 6" /protein_id="EOY21460.1" /db_xref="Phytozome:POPTR_0018s14920.1" /db_xref="TAIR:AT5G08370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P14749" /translation="MIAGASLVETLRTKTCSRTMPGSLDHEEQDAKTFASWGVDYLKY DNCENYGITPRERYHRMSEALLSTGRPIFFSICEWGREHPATWAPDIGNSWRTSGDVR DNWDSMIVRADRNDEWASYAGPGGWNDPDMLEVGNGGMTVEEYRSHFSIWAIAKAPLI IGCDIRTMDNDTYEILSNEDVIAVNQDKLGVQGKKVKRDGHLEVWAGPLSDNKVAVVL WNRGSRNANVTALWSDIGLQPTVAVKARDLWTHSTEYSLKGQISAQLESHACKMYVLT PH" mRNA complement(join(8491407..8491436,8491982..8492126, 8492228..8492277,8492350..8492440,8492522..8492604, 8492754..8492818,8493412..8493495,8494294..8494359, 8494515..8494573,8494671..8494746,8495708..8495811, 8496542..8496576,8496692..8496748,8496841..8496899, 8496998..8497242)) /locus_tag="TCM_013025" /product="Alpha-galactosidase isoform 4" /inference="alignment:exonerate- protein:2:TAIR:AT5G08370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007627t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s14920.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc298t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc180t10" CDS complement(join(8491426..8491436,8491982..8492126, 8492228..8492277,8492350..8492440,8492522..8492604, 8492754..8492818,8493412..8493495,8494294..8494359, 8494515..8494573,8494671..8494746,8495708..8495811, 8496542..8496576,8496692..8496748,8496841..8496899, 8496998..8497179)) /locus_tag="TCM_013025" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG007627t1" /codon_start=1 /product="Alpha-galactosidase isoform 4" /protein_id="EOY21458.1" /db_xref="Phytozome:POPTR_0018s14920.1" /db_xref="TAIR:AT5G08370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P14749" /translation="MGDSSSAYLCLAVGLALVVWSVSNGDEVAAADRMVGRSSNSFQQ MRRKTFANGLGRTPPMGWNSWNHFGCDIEEKAIKETADAMEARGLAKLGYKYVNLDDC WGEPGRDAKGNLVSKASKFPSGMKALAYYVHSKGLKLGIYSDAGTKTCSRTMPGSLDH EEQDAKTFASWGVDYLKYDNCENYGITPRERYHRMSEALLSTGRPIFFSICEWGREHP ATWAPDIGNSWRTSGDVRDNWDSMIVRADRNDEWASYAGPGGWNDPDMLEVGNGGMTV EEYRSHFSIWAIAKAPLIIGCDIRTMDNDTYEILSNEDVIAVNQDKLGVQGKKVKRDG HLEVWAGPLSDNKVAVVLWNRGSRNANVTALWSDIGLQPTVAVKARDLWTVTFN" mRNA complement(join(8492255..8492277,8492350..8492604, 8492754..8492818,8493412..8493495,8494294..8494359, 8494515..8494573,8494671..8494746,8495708..8495811, 8496542..8496576,8496692..8496748,8496841..8496899, 8496998..8497238)) /locus_tag="TCM_013025" /product="Alpha-galactosidase isoform 7" /inference="alignment:exonerate- protein:2:TAIR:AT5G08370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007627t1" /inference="similar to AA sequence:Phytozome:Glyma09g28920.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc300t5; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc180t10" CDS complement(join(8492501..8492604,8492754..8492818, 8493412..8493495,8494294..8494359,8494515..8494573, 8494671..8494746,8495708..8495811,8496542..8496576, 8496692..8496748,8496841..8496899,8496998..8497179)) /locus_tag="TCM_013025" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG007627t1" /codon_start=1 /product="Alpha-galactosidase isoform 7" /protein_id="EOY21461.1" /db_xref="Phytozome:Glyma09g28920.1" /db_xref="TAIR:AT5G08370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P14749" /translation="MGDSSSAYLCLAVGLALVVWSVSNGDEVAAADRMVGRSSNSFQQ MRRKTFANGLGRTPPMGWNSWNHFGCDIEEKAIKETADAMEARGLAKLGYKYVNLDDC WGEPGRDAKGNLVSKASKFPSGMKALAYYVHSKGLKLGIYSDAGTKTCSRTMPGSLDH EEQDAKTFASWGVDYLKYDNCENYGITPRERYHRMSEALLSTGRPIFFSICEWGREHP ATWAPDIGNSWRTSGDVRDNWDSMIVRADRNDEWASYAGPGGWNDPDMLEVGNGGMTV EEYRSHFSIWAIAKVGRETA" mobile_element 8498045..8498118 /note="source:INTACT651_F88_scaffold_2-int 85 162" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8498108..8498191 /note="source:INTACT537_F22_scaffold_2-int 8372 8457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8498187..8499194 /note="source:CACAO_M_E33933_F9_scaffold_4 996 2000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8498606..8499283) /note="source:CACAO_Mariner_E229_scaffold_9 11753 12434" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 8501278..8504987 /locus_tag="TCM_013026" /note="dbxref CacaoGD:Thecc1EG013026" mRNA join(8501278..8501431,8501522..8501682,8502204..8502502, 8502593..8503642) /locus_tag="TCM_013026" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400056203" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016604t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05360.5" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01776t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8343t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc742t12" mRNA join(<8501310..8501342,8501522..8501682,8502204..8502502, 8502593..>8503182) /locus_tag="TCM_013026" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400056203" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016604t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05360.2" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc875t7; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8343t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc742t12" CDS join(<8501312..8501342,8501522..8501682,8502204..8502502, 8502593..>8503181) /locus_tag="TCM_013026" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG016604t1" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY21464.1" /db_xref="Phytozome:POPTR_0015s05360.2" /db_xref="TAIR:AT1G48450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T5C9" /translation="NSHNSGQAGSGLKMDAATASASVVGSSMTTRRPPSSVTRSAILT ANEPHFLRFAAKPRLPFSIKHYSPLSYSKPQNRRMALGSRRGMVVRASSSPDSAGPTA PIAPLQMESPIGQFLSQILISHPHLVPAAVEQQLEQLQTDRDAEEKKEEPSASAGTDL VLYRRIAEVKANERKKALEEILYALVVQKFMDANVSLVPAMTPSSTDPSGRVDMWPSE EDKLELLHSPEAYEMIQNHLALILGNRLGDSTSVAQISKLRVGQVYAASVMYGYFLKR VDQRFQLEKTMKILPNASNGEESGVEQSVGEDMGTAGLGDSYKAVSSHPEVSSWSGGI SPGGFGHGIKPCRLRTYVMSFDGETL" mRNA join(8501363..8501431,8501522..8501682,8502204..8502502, 8502593..8503405,8504447..8504987) /locus_tag="TCM_013026" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400056203" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016604t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05360.5" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8343t1" CDS join(8501530..8501682,8502204..8502502,8502593..8503405, 8504447..8504498) /locus_tag="TCM_013026" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016604t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21462.1" /db_xref="Phytozome:POPTR_0015s05360.5" /db_xref="TAIR:AT1G48450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T5C9" /translation="MDAATASASVVGSSMTTRRPPSSVTRSAILTANEPHFLRFAAKP RLPFSIKHYSPLSYSKPQNRRMALGSRRGMVVRASSSPDSAGPTAPIAPLQMESPIGQ FLSQILISHPHLVPAAVEQQLEQLQTDRDAEEKKEEPSASAGTDLVLYRRIAEVKANE RKKALEEILYALVVQKFMDANVSLVPAMTPSSTDPSGRVDMWPSEEDKLELLHSPEAY EMIQNHLALILGNRLGDSTSVAQISKLRVGQVYAASVMYGYFLKRVDQRFQLEKTMKI LPNASNGEESGVEQSVGEDMGTAGLGDSYKAVSSHPEVSSWSGGISPGGFGHGIKPCR LRTYVMSFDGETLQKFAAIRSKEAVSIIEKHTEALFGRPEIVITPQGTVDSSKDELIK ISFNGLKRLVLEAVTFGSFLWDVESYVDSREGRRNGGRGTSVNERG" CDS join(8501530..8501682,8502204..8502502,8502593..8503427) /locus_tag="TCM_013026" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016604t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21463.1" /db_xref="Phytozome:POPTR_0015s05360.5" /db_xref="TAIR:AT1G48450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T5C9" /translation="MDAATASASVVGSSMTTRRPPSSVTRSAILTANEPHFLRFAAKP RLPFSIKHYSPLSYSKPQNRRMALGSRRGMVVRASSSPDSAGPTAPIAPLQMESPIGQ FLSQILISHPHLVPAAVEQQLEQLQTDRDAEEKKEEPSASAGTDLVLYRRIAEVKANE RKKALEEILYALVVQKFMDANVSLVPAMTPSSTDPSGRVDMWPSEEDKLELLHSPEAY EMIQNHLALILGNRLGDSTSVAQISKLRVGQVYAASVMYGYFLKRVDQRFQLEKTMKI LPNASNGEESGVEQSVGEDMGTAGLGDSYKAVSSHPEVSSWSGGISPGGFGHGIKPCR LRTYVMSFDGETLQKFAAIRSKEAVSIIEKHTEALFGRPEIVITPQGTVDSSKDELIK ISFNGLKRLVLEAVTFGSFLWDVESYVDSRYHFVMN" gene complement(8505077..8507551) /locus_tag="TCM_013027" /note="dbxref CacaoGD:Thecc1EG013027" mRNA complement(join(8505077..8505856,8505957..8506024, 8506110..8506238,8506313..8506440,8506547..8506654, 8506748..8506904,8507174..8507551)) /locus_tag="TCM_013027" /product="Purple acid phosphatase 3" /inference="alignment:exonerate- protein:2:ricco:29968.m000665.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013063t2" /inference="similar to AA sequence:Phytozome:Glyma08g06090.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09865t00001" CDS complement(join(8505643..8505856,8505957..8506024, 8506110..8506238,8506313..8506440,8506547..8506654, 8506748..8506904,8507174..8507368)) /locus_tag="TCM_013027" /note="paralog of Thecc1EG013063t2" /codon_start=1 /product="Purple acid phosphatase 3" /protein_id="EOY21465.1" /db_xref="Phytozome:Glyma08g06090.1" /db_xref="TAIR:AT1G14700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H129" /translation="MDGSCKHFISLSLAWLAFFCLYFTFVSAELQRFQQPVKADGSLS FLVIGDWGRKGAYNQSEVALQMGKVGEKLSIDFVVSTGDNFYDKGLASPDDPDFKDSF TEIYTANSLQKHWYSVLGNHDYRGNVRAQLSPILRRIDSRWLCLRSFIVNTEMAELFF IDTTPFVDEYFRNPKHQKFDWRGVIPRKKYLRRVLKDVESALRESVANWKIVIGHHPI RSMGHHGDTKELIMQLLPKLEANNVDMYINGHDHCLEHISSITSPLQFLTSGGGSKAW KGDFHYLDRDEMKFYYDGQGFMSVELTQTNGRIAFHDVLGKVLHSLDLSKQLYTAM" mobile_element 8512592..8514035 /note="source:CACAO_M_E42514_F40_scaffold_5 17377 18823" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8514036..8515102 /note="source:CACAO_M_E12892_F85_scaffold_3 1 2511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8515350..8515901 /note="source:CACAO_M_E12892_F85_scaffold_3 2512 3063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8515915..8517158) /note="source:CACAO_M_S_E66639_F28_scaffold_5 4368 5609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8518622..8521582 /note="source:CACAO_M_E12893_F80_scaffold_3 1 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8521583..8521657 /note="source:CACAO_M_E11098_F15_scaffold_2 7664 7744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8523794..8523903 /note="source:CACAO_M_E11098_F15_scaffold_2 9128 9245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8526413..8530840) /note="source:INTACT67_F28_scaffold_2-int 1 4447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8534108..8534836) /note="source:CACAO_M_E48538_F49_scaffold_6 1789 2521" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8535260..8541315 /locus_tag="TCM_013031" /note="dbxref CacaoGD:Thecc1EG013031" mRNA join(8535260..8535435,8537141..8537264,8538786..8538955, 8540452..8541315) /locus_tag="TCM_013031" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS join(8535428..8535435,8537141..8537264,8538786..8538955, 8540452..8540509) /locus_tag="TCM_013031" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21466.1" /translation="MQSTNVVSFSILYCVKVASPPIKARELHPRTNSLSISRIDTLDI EVKKAIFNIEKDSEVGLDGFSSLFYQHYWAIVAKDLLEAVKEFFNGATFLKGVTSMTF REDLAYWTLTSNGDFST" mobile_element 8535769..8538720 /note="source:CACAO_M_E12901_F33_scaffold_3 1 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8542865..8545875 /note="source:CACAO_M_E12903_F7_scaffold_3 1 3011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8546866..8548564) /note="source:CACAO_M_S_E52921_F60_scaffold_5 17922 19639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8548563..8549335 /note="source:CACAO_M_E48538_F49_scaffold_6 1800 2502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8549661..8550548) /note="source:CACAO_M_E69551_F193_scaffold_9 12353 13238" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8550519..8550734 /note="source:CACAO_M_E33213_F12_scaffold_4 15575 15775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8550735..8551680) /note="source:CACAO_M_E69551_F193_scaffold_9 11135 12060" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8551696..8553413) /note="source:CACAO_M_E69551_F193_scaffold_9 7354 9066" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8556915..8558338) /note="source:INTACT280_F60_scaffold_5-int 6797 8212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8558495..8559035 /note="source:CACAO_M_S_E144515_F7_scaffold_10 1 541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8559036..8561893 /note="source:CACAO_M_E12912_F15_scaffold_3 1 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8561894..8563186 /note="source:CACAO_M_S_E144515_F7_scaffold_10 562 1855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8571140..8572661 /note="source:CACAO_M_E34392_F323_scaffold_5 468 1989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8572766..8572877) /note="source:CACAO_M_S_E119129_F328_scaffold_9 166 1246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8572878..8574007) /note="source:CACAO_Mariner_E181_scaffold_6 1 1094" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(8574008..8574022) /note="source:CACAO_M_S_E119129_F328_scaffold_9 1 165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8580352..8582793 /note="source:INTACT90_F13_scaffold_4-int 8885 11327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8586174..8588159 /note="source:INTACT407F_F356_scaffold_4-int 13510 15552" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8588160..8590626 /note="source:CACAO_M_E69938_F9_scaffold_9 1062 3517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8590179..8590692) /note="source:CACAO_M_S_E32835_F9_scaffold_4 4457 5034" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8590683..8593807) /note="source:CACAO_M_S_E51565_F2_scaffold_4 4382 7472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8593808..8594652 /note="source:CACAO_M_E69938_F9_scaffold_9 1 828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8596034..8596109) /note="source:INTACT316_F9_scaffold_4-int 2823 2897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8596155..8596206 /note="source:CACAO_M_E42586_F54_scaffold_5 1751 1805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8596805..8598173 /note="source:CACAO_M_E58324_F9_scaffold_9 21590 22968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8598012..8598200) /note="source:CACAO_M_S_E14849_F156_scaffold_2 739 943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8598302..8598364) /note="source:CACAO_M_E49195_F17_scaffold_6 1618 1677" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8598311..8598633 /note="source:INTACT93F_F345_scaffold_2-int 16823 17146" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8598400..8599651) /note="source:CACAO_M_E12209_F369_scaffold_3 1 1301" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8599652..8599939) /note="source:CACAO_M_E50300_F369_scaffold_7 672 1077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8599693..8600628 /note="source:CACAO_M_E58324_F9_scaffold_9 23155 24073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8604409..8607156 /note="source:CACAO_M_E85576_F96_scaffold_11 1 2754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8609258..8611850) /note="source:CACAO_M_S_E120437_F231_scaffold_10 1 2633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8614115..8614271 /note="source:CACAO_M_S_E122136_F76_scaffold_10 131 350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8614848..8614895 /note="source:CACAO_M_S_E122136_F76_scaffold_10 758 805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8615249..8615483 /note="source:CACAO_M_S_E122136_F76_scaffold_10 4328 4541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8615514..8616838 /note="source:CACAO_M_S_E122136_F76_scaffold_10 4673 5955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8617445..8617983 /note="source:CACAO_M_S_E122136_F76_scaffold_10 5947 6475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8617975..8618105 /note="source:CACAO_M_S_E122136_F76_scaffold_10 16704 16833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8618966..8619239) /note="source:INTACT649F_F368_scaffold_5-int 14585 14852" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8619455..8620363) /note="source:INTACT649F_F368_scaffold_5-int 13599 14477" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8620529..8628012) /note="source:CACAO_M_S_E122077_F328_scaffold_10 2665 10198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8627999..8629799) /note="source:INTACT1782F_F71_scaffold_10-int 5169 6999" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8628011..8635643) /note="source:INTACT126_F14_scaffold_3-int 8679 15937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8635644..8640514) /note="source:INTACT73_F14_scaffold_4-int 1 4891" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8640460..8640528) /note="source:CACAO_M_E42514_F40_scaffold_5 14433 14501" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8641255..8641385 /note="source:CACAO_M_E3884_F22_scaffold_1 17671 17817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8643769..8643865) /note="source:INTACT135F_F90_scaffold_2-int 16988 17081" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8644330..8646819) /note="source:CACAO_M_S_E64276_F7_scaffold_5 521 3012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8646820..8649799 /note="source:CACAO_M_E12931_F245_scaffold_3 1 2980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8649800..8650323) /note="source:CACAO_M_S_E16105_F7_scaffold_2 1 524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8650654..8651746 /note="source:CACAO_M_E33933_F9_scaffold_4 23582 24669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8651734..8651881 /note="source:CACAO_M_E33933_F9_scaffold_4 1288 1433" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8653589..8653827) /note="source:scaffold_9_CACTA_0930 1288 1525" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8655324..8658627 /note="source:INTACT118_F5_scaffold_9-int 1057 5839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8657610..8662165) /note="source:INTACT597_F267_scaffold_2-int 9053 13656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8662166..8665247 /note="source:CACAO_M_E12933_F42_scaffold_3 1 3082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8665248..8667581) /note="source:scaffold_6_CACTA_0711 4448 6779" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8666580..8668388 /note="source:INTACT118_F5_scaffold_9-int 6423 8289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8670497..8670673) /note="source:CACAO_M_E3884_F22_scaffold_1 13082 13279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8671949..8681611 /note="source:INTACT741_F17_scaffold_3-int 1 9663" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8683730..8690384 /locus_tag="TCM_013043" /note="dbxref CacaoGD:Thecc1EG013043" mRNA join(8683730..8684050,8684694..8686910,8687028..8687084, 8687260..8687328,8687405..8687470,8687560..8687628, 8687715..8687756,8687849..8687907,8688006..8688561, 8690002..8690384) /locus_tag="TCM_013043" /product="Far-red elongated hypocotyls 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002030t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01528t00002" mRNA join(8683803..8684050,8684694..8687084,8687260..8687328, 8687405..8687470,8687560..8687628,8687715..8687756, 8687849..8687907,8688006..8688735) /locus_tag="TCM_013043" /product="Far-red elongated hypocotyls 3 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002030t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02150.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1016t7; inference alignment:Newbler:10:TSA:cgbaB_g01528t00002" mRNA join(8683803..8684050,8684694..8686910,8687028..8687084, 8687260..8687470,8687560..8687628,8687715..8687756, 8687849..8687907,8688006..8688735) /locus_tag="TCM_013043" /product="Far-red elongated hypocotyls 3 isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002030t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02150.1" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1016t4; inference alignment:Newbler:10:TSA:cgbaB_g01528t00002" mRNA join(8683803..8684050,8684694..8686910,8687028..8687084, 8687260..8687328,8687405..8687470,8687560..8687756, 8687849..8687907,8688006..8688735) /locus_tag="TCM_013043" /product="Far-red elongated hypocotyls 3 isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002030t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02150.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1016t6; inference alignment:Newbler:10:TSA:cgbaB_g01528t00002" mRNA join(8683803..8684050,8684694..8686910,8687028..8687084, 8687260..8687328,8687405..8687470,8687560..8687628, 8687715..8687756,8687849..8687907,8687993..8688735) /locus_tag="TCM_013043" /product="Far-red elongated hypocotyls 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002030t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02150.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1016t8; alternateUTRof:Thecc1EG013043t1; inference alignment:Newbler:10:TSA:cgbaB_g01528t00002" CDS join(8684739..8687084,8687260..8687328,8687405..8687470, 8687560..8687628,8687715..8687756,8687849..8687905) /locus_tag="TCM_013043" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG002030t1" /codon_start=1 /product="Far-red elongated hypocotyls 3 isoform 5" /protein_id="EOY21471.1" /db_xref="Phytozome:POPTR_0006s02150.1" /db_xref="TAIR:AT3G22170.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD60" /translation="MDIDLRLPSGEQCKEDEEANGIDNILDGDEKLHNGVVEAGNIAH VGQDVRPEDGVEMNSSAVDMVTFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNT AIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKT DCKASMHVKRRPDGKWVVHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKNVVG LKNDPKNPFDKGRNLALEAGDVKILLEFFTHMQNINSNFFYAIDLGEDQRLKSLFWVD AKSRHDYSYFCDVVSFDTTYVRNKYKMPLALFIGVNHHYQFMPLGCALVSDDSAATFS WLMQTWLKAMGGQSPRVIITDQDRIVKSVVAEIFPNTHHCFFLWHVLGKVSENLGHVI KQHGNFMAKFEKCIYRSWTEEEFAKRWWKILDRFGLKDDEWMKSLYEDRRKWVPTYIM DVLLAGMSMVQRSESVNSFFDKYVHKKTTVQEFLKQYEAILQDRYEEEAKANSDSWSK LPTLKSPSPFEKSVAGLYTHTVFKKFQVEVVGAIACHPKPENHDATSSFFRVQDLEKN QDFIVTLNEMKSEVSCICRLYEYKGYLCRHAMVVLQINGHSAIPSQYILKRWTKEAKS RHLMGDESEQVQSRVQRYNDLFQRAMKLIEEGSLSQESYYIAFRSLEEAFGNCLSANT SNKSLAEAVTSPTQGMICIEEDNQSRSTSKTNKKKNPTKKRKVNYYSYGHVDIFLQIL YPVLTGSFVLFLFLFFVCVLYWQGNSEQEVMTVPATDGLQQMDKLSSRSVGLDGYFGA QTSVQGMVQLNLMAPRDNYYGNQQTIQGLGQLNTIAASHDGYYGPQQTMPGMGQMDFF RAPGFYIRDDTNVRAAQLHDDASRHA" CDS join(8684739..8686910,8687028..8687084,8687260..8687328, 8687405..8687470,8687560..8687628,8687715..8687756, 8687849..8687905) /locus_tag="TCM_013043" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002030t1" /codon_start=1 /product="Far-red elongated hypocotyls 3 isoform 1" /protein_id="EOY21467.1" /db_xref="Phytozome:POPTR_0006s02150.1" /db_xref="TAIR:AT3G22170.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD60" /translation="MDIDLRLPSGEQCKEDEEANGIDNILDGDEKLHNGVVEAGNIAH VGQDVRPEDGVEMNSSAVDMVTFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNT AIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKT DCKASMHVKRRPDGKWVVHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKNVVG LKNDPKNPFDKGRNLALEAGDVKILLEFFTHMQNINSNFFYAIDLGEDQRLKSLFWVD AKSRHDYSYFCDVVSFDTTYVRNKYKMPLALFIGVNHHYQFMPLGCALVSDDSAATFS WLMQTWLKAMGGQSPRVIITDQDRIVKSVVAEIFPNTHHCFFLWHVLGKVSENLGHVI KQHGNFMAKFEKCIYRSWTEEEFAKRWWKILDRFGLKDDEWMKSLYEDRRKWVPTYIM DVLLAGMSMVQRSESVNSFFDKYVHKKTTVQEFLKQYEAILQDRYEEEAKANSDSWSK LPTLKSPSPFEKSVAGLYTHTVFKKFQVEVVGAIACHPKPENHDATSSFFRVQDLEKN QDFIVTLNEMKSEVSCICRLYEYKGYLCRHAMVVLQINGHSAIPSQYILKRWTKEAKS RHLMGDESEQVQSRVQRYNDLFQRAMKLIEEGSLSQESYYIAFRSLEEAFGNCLSANT SNKSLAEAVTSPTQGMICIEEDNQSRSTSKTNKKKNPTKKRKGNSEQEVMTVPATDGL QQMDKLSSRSVGLDGYFGAQTSVQGMVQLNLMAPRDNYYGNQQTIQGLGQLNTIAASH DGYYGPQQTMPGMGQMDFFRAPGFYIRDDTNVRAAQLHDDASRHA" CDS join(8684739..8686910,8687028..8687084,8687260..8687328, 8687405..8687470,8687560..8687628,8687715..8687756, 8687849..8687905) /locus_tag="TCM_013043" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002030t1" /codon_start=1 /product="Far-red elongated hypocotyls 3 isoform 1" /protein_id="EOY21468.1" /db_xref="Phytozome:POPTR_0006s02150.1" /db_xref="TAIR:AT3G22170.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD60" /translation="MDIDLRLPSGEQCKEDEEANGIDNILDGDEKLHNGVVEAGNIAH VGQDVRPEDGVEMNSSAVDMVTFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNT AIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKT DCKASMHVKRRPDGKWVVHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKNVVG LKNDPKNPFDKGRNLALEAGDVKILLEFFTHMQNINSNFFYAIDLGEDQRLKSLFWVD AKSRHDYSYFCDVVSFDTTYVRNKYKMPLALFIGVNHHYQFMPLGCALVSDDSAATFS WLMQTWLKAMGGQSPRVIITDQDRIVKSVVAEIFPNTHHCFFLWHVLGKVSENLGHVI KQHGNFMAKFEKCIYRSWTEEEFAKRWWKILDRFGLKDDEWMKSLYEDRRKWVPTYIM DVLLAGMSMVQRSESVNSFFDKYVHKKTTVQEFLKQYEAILQDRYEEEAKANSDSWSK LPTLKSPSPFEKSVAGLYTHTVFKKFQVEVVGAIACHPKPENHDATSSFFRVQDLEKN QDFIVTLNEMKSEVSCICRLYEYKGYLCRHAMVVLQINGHSAIPSQYILKRWTKEAKS RHLMGDESEQVQSRVQRYNDLFQRAMKLIEEGSLSQESYYIAFRSLEEAFGNCLSANT SNKSLAEAVTSPTQGMICIEEDNQSRSTSKTNKKKNPTKKRKGNSEQEVMTVPATDGL QQMDKLSSRSVGLDGYFGAQTSVQGMVQLNLMAPRDNYYGNQQTIQGLGQLNTIAASH DGYYGPQQTMPGMGQMDFFRAPGFYIRDDTNVRAAQLHDDASRHA" CDS join(8684739..8686910,8687028..8687084,8687260..8687328, 8687405..8687470,8687560..8687634) /locus_tag="TCM_013043" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG002030t1" /codon_start=1 /product="Far-red elongated hypocotyls 3 isoform 7" /protein_id="EOY21473.1" /db_xref="Phytozome:POPTR_0006s02150.1" /db_xref="TAIR:AT3G22170.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD60" /translation="MDIDLRLPSGEQCKEDEEANGIDNILDGDEKLHNGVVEAGNIAH VGQDVRPEDGVEMNSSAVDMVTFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNT AIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKT DCKASMHVKRRPDGKWVVHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKNVVG LKNDPKNPFDKGRNLALEAGDVKILLEFFTHMQNINSNFFYAIDLGEDQRLKSLFWVD AKSRHDYSYFCDVVSFDTTYVRNKYKMPLALFIGVNHHYQFMPLGCALVSDDSAATFS WLMQTWLKAMGGQSPRVIITDQDRIVKSVVAEIFPNTHHCFFLWHVLGKVSENLGHVI KQHGNFMAKFEKCIYRSWTEEEFAKRWWKILDRFGLKDDEWMKSLYEDRRKWVPTYIM DVLLAGMSMVQRSESVNSFFDKYVHKKTTVQEFLKQYEAILQDRYEEEAKANSDSWSK LPTLKSPSPFEKSVAGLYTHTVFKKFQVEVVGAIACHPKPENHDATSSFFRVQDLEKN QDFIVTLNEMKSEVSCICRLYEYKGYLCRHAMVVLQINGHSAIPSQYILKRWTKEAKS RHLMGDESEQVQSRVQRYNDLFQRAMKLIEEGSLSQESYYIAFRSLEEAFGNCLSANT SNKSLAEAVTSPTQGMICIEEDNQSRSTSKTNKKKNPTKKRKGNSEQEVMTVPATDGL QQMDKLSSRSVGLDGYFGAQTSVQGMVQLNLMAPRDNYYGNQQTIQGLGQLNTIAASH DGYYGPQQTMPGMV" CDS join(8684739..8686910,8687028..8687084,8687260..8687388) /locus_tag="TCM_013043" /note="encoded by transcript variant 8; alternatively spliced; paralog of Thecc1EG002030t1" /codon_start=1 /product="Far-red elongated hypocotyls 3 isoform 8" /protein_id="EOY21474.1" /db_xref="Phytozome:POPTR_0006s02150.1" /db_xref="TAIR:AT3G22170.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD60" /translation="MDIDLRLPSGEQCKEDEEANGIDNILDGDEKLHNGVVEAGNIAH VGQDVRPEDGVEMNSSAVDMVTFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNT AIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKT DCKASMHVKRRPDGKWVVHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKNVVG LKNDPKNPFDKGRNLALEAGDVKILLEFFTHMQNINSNFFYAIDLGEDQRLKSLFWVD AKSRHDYSYFCDVVSFDTTYVRNKYKMPLALFIGVNHHYQFMPLGCALVSDDSAATFS WLMQTWLKAMGGQSPRVIITDQDRIVKSVVAEIFPNTHHCFFLWHVLGKVSENLGHVI KQHGNFMAKFEKCIYRSWTEEEFAKRWWKILDRFGLKDDEWMKSLYEDRRKWVPTYIM DVLLAGMSMVQRSESVNSFFDKYVHKKTTVQEFLKQYEAILQDRYEEEAKANSDSWSK LPTLKSPSPFEKSVAGLYTHTVFKKFQVEVVGAIACHPKPENHDATSSFFRVQDLEKN QDFIVTLNEMKSEVSCICRLYEYKGYLCRHAMVVLQINGHSAIPSQYILKRWTKEAKS RHLMGDESEQVQSRVQRYNDLFQRAMKLIEEGSLSQESYYIAFRSLEEAFGNCLSANT SNKSLAEAVTSPTQGMICIEEDNQSRSTSKTNKKKNPTKKRKGNSEQEVMTVPATDGL QQMDKLSSRSVGLDGYFGAQTSVQGMVRIVTIDFIYLLCQLYTIS" mRNA join(8684941..8686910,8687028..8687084,8687260..8687328, 8687411..8687470,8687560..8687628,8687715..8687756, 8687849..8687907,8688006..8688251) /locus_tag="TCM_013043" /product="Far-red elongated hypocotyls 3 isoform 10" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002030t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02150.1" /note="transcript variant 10; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc563t4_C2; inference alignment:Newbler:10:TSA:cgbaB_g01528t00002" mRNA join(8684945..8684970,8685113..8687084,8687260..8687328, 8687405..8687470,8687560..8687628,8687715..8687756, 8687849..8687907,8688006..8688735) /locus_tag="TCM_013043" /product="Far-red elongated hypocotyls 3 isoform 9" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002030t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02150.1" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc707t7; inference alignment:Newbler:10:TSA:cgbaB_g01528t00002" mRNA join(8684945..8684970,8685113..8686910,8687028..8687084, 8687260..8687328,8687405..8687470,8687560..8687628, 8687715..8687756,8687849..8687907,8687993..8688735) /locus_tag="TCM_013043" /product="Far-red elongated hypocotyls 3 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002030t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02150.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc707t5; inference alignment:Newbler:10:TSA:cgbaB_g01528t00002" mRNA join(8684945..8684970,8685113..8686910,8687028..8687084, 8687260..8687328,8687405..8687470,8687560..8687628, 8687715..8687756,8687849..8687907,8688006..8688735) /locus_tag="TCM_013043" /product="Far-red elongated hypocotyls 3 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002030t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02150.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc707t1; alternateUTRof:Thecc1EG013043t3; inference alignment:Newbler:10:TSA:cgbaB_g01528t00002" mRNA join(8684945..8684970,8685113..8686910,8687028..8687084, 8687260..8687328,8687405..8687470,8687560..8687628, 8687721..8687756,8687849..8687907,8688006..8688735) /locus_tag="TCM_013043" /product="Far-red elongated hypocotyls 3 isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002030t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02150.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc707t6; inference alignment:Newbler:10:TSA:cgbaB_g01528t00002" CDS join(8684973..8686910,8687028..8687084,8687260..8687328, 8687411..8687470,8687560..8687628,8687715..8687756, 8687849..8687905) /locus_tag="TCM_013043" /note="encoded by transcript variant 10; alternatively spliced; paralog of Thecc1EG002030t1" /codon_start=1 /product="Far-red elongated hypocotyls 3 isoform 10" /protein_id="EOY21476.1" /db_xref="Phytozome:POPTR_0006s02150.1" /db_xref="TAIR:AT3G22170.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD60" /translation="MEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFA CSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKTDCKASMHVKRRPDGKWVVHS FVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKNVVGLKNDPKNPFDKGRNLALEAG DVKILLEFFTHMQNINSNFFYAIDLGEDQRLKSLFWVDAKSRHDYSYFCDVVSFDTTY VRNKYKMPLALFIGVNHHYQFMPLGCALVSDDSAATFSWLMQTWLKAMGGQSPRVIIT DQDRIVKSVVAEIFPNTHHCFFLWHVLGKVSENLGHVIKQHGNFMAKFEKCIYRSWTE EEFAKRWWKILDRFGLKDDEWMKSLYEDRRKWVPTYIMDVLLAGMSMVQRSESVNSFF DKYVHKKTTVQEFLKQYEAILQDRYEEEAKANSDSWSKLPTLKSPSPFEKSVAGLYTH TVFKKFQVEVVGAIACHPKPENHDATSSFFRVQDLEKNQDFIVTLNEMKSEVSCICRL YEYKGYLCRHAMVVLQINGHSAIPSQYILKRWTKEAKSRHLMGDESEQVQSRVQRYND LFQRAMKLIEEGSLSQESYYIAFRSLEEAFGNCLSANTSNKSLAEAVTSPTQGMICIE EDNQSRSTSKTNKKKNPTKKRKGNSEQEVMTVPATDGLQQMDKLSSRSVGLDGYFGAQ TSVQGMLNLMAPRDNYYGNQQTIQGLGQLNTIAASHDGYYGPQQTMPGMGQMDFFRAP GFYIRDDTNVRAAQLHDDASRHA" CDS join(8685234..8687084,8687260..8687328,8687405..8687470, 8687560..8687628,8687715..8687756,8687849..8687905) /locus_tag="TCM_013043" /note="encoded by transcript variant 9; alternatively spliced; paralog of Thecc1EG002030t1" /codon_start=1 /product="Far-red elongated hypocotyls 3 isoform 9" /protein_id="EOY21475.1" /db_xref="Phytozome:POPTR_0006s02150.1" /db_xref="TAIR:AT3G22170.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD60" /translation="MHVKRRPDGKWVVHSFVKEHNHELLPAQAVSEQTRRMYAAMARQ FAEYKNVVGLKNDPKNPFDKGRNLALEAGDVKILLEFFTHMQNINSNFFYAIDLGEDQ RLKSLFWVDAKSRHDYSYFCDVVSFDTTYVRNKYKMPLALFIGVNHHYQFMPLGCALV SDDSAATFSWLMQTWLKAMGGQSPRVIITDQDRIVKSVVAEIFPNTHHCFFLWHVLGK VSENLGHVIKQHGNFMAKFEKCIYRSWTEEEFAKRWWKILDRFGLKDDEWMKSLYEDR RKWVPTYIMDVLLAGMSMVQRSESVNSFFDKYVHKKTTVQEFLKQYEAILQDRYEEEA KANSDSWSKLPTLKSPSPFEKSVAGLYTHTVFKKFQVEVVGAIACHPKPENHDATSSF FRVQDLEKNQDFIVTLNEMKSEVSCICRLYEYKGYLCRHAMVVLQINGHSAIPSQYIL KRWTKEAKSRHLMGDESEQVQSRVQRYNDLFQRAMKLIEEGSLSQESYYIAFRSLEEA FGNCLSANTSNKSLAEAVTSPTQGMICIEEDNQSRSTSKTNKKKNPTKKRKVNYYSYG HVDIFLQILYPVLTGSFVLFLFLFFVCVLYWQGNSEQEVMTVPATDGLQQMDKLSSRS VGLDGYFGAQTSVQGMVQLNLMAPRDNYYGNQQTIQGLGQLNTIAASHDGYYGPQQTM PGMGQMDFFRAPGFYIRDDTNVRAAQLHDDASRHA" CDS join(8685234..8686910,8687028..8687084,8687260..8687328, 8687405..8687470,8687560..8687628,8687715..8687756, 8687849..8687905) /locus_tag="TCM_013043" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG002030t1" /codon_start=1 /product="Far-red elongated hypocotyls 3 isoform 3" /protein_id="EOY21469.1" /db_xref="Phytozome:POPTR_0006s02150.1" /db_xref="TAIR:AT3G22170.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD60" /translation="MHVKRRPDGKWVVHSFVKEHNHELLPAQAVSEQTRRMYAAMARQ FAEYKNVVGLKNDPKNPFDKGRNLALEAGDVKILLEFFTHMQNINSNFFYAIDLGEDQ RLKSLFWVDAKSRHDYSYFCDVVSFDTTYVRNKYKMPLALFIGVNHHYQFMPLGCALV SDDSAATFSWLMQTWLKAMGGQSPRVIITDQDRIVKSVVAEIFPNTHHCFFLWHVLGK VSENLGHVIKQHGNFMAKFEKCIYRSWTEEEFAKRWWKILDRFGLKDDEWMKSLYEDR RKWVPTYIMDVLLAGMSMVQRSESVNSFFDKYVHKKTTVQEFLKQYEAILQDRYEEEA KANSDSWSKLPTLKSPSPFEKSVAGLYTHTVFKKFQVEVVGAIACHPKPENHDATSSF FRVQDLEKNQDFIVTLNEMKSEVSCICRLYEYKGYLCRHAMVVLQINGHSAIPSQYIL KRWTKEAKSRHLMGDESEQVQSRVQRYNDLFQRAMKLIEEGSLSQESYYIAFRSLEEA FGNCLSANTSNKSLAEAVTSPTQGMICIEEDNQSRSTSKTNKKKNPTKKRKGNSEQEV MTVPATDGLQQMDKLSSRSVGLDGYFGAQTSVQGMVQLNLMAPRDNYYGNQQTIQGLG QLNTIAASHDGYYGPQQTMPGMGQMDFFRAPGFYIRDDTNVRAAQLHDDASRHA" CDS join(8685234..8686910,8687028..8687084,8687260..8687328, 8687405..8687470,8687560..8687628,8687715..8687756, 8687849..8687905) /locus_tag="TCM_013043" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG002030t1" /codon_start=1 /product="Far-red elongated hypocotyls 3 isoform 3" /protein_id="EOY21470.1" /db_xref="Phytozome:POPTR_0006s02150.1" /db_xref="TAIR:AT3G22170.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD60" /translation="MHVKRRPDGKWVVHSFVKEHNHELLPAQAVSEQTRRMYAAMARQ FAEYKNVVGLKNDPKNPFDKGRNLALEAGDVKILLEFFTHMQNINSNFFYAIDLGEDQ RLKSLFWVDAKSRHDYSYFCDVVSFDTTYVRNKYKMPLALFIGVNHHYQFMPLGCALV SDDSAATFSWLMQTWLKAMGGQSPRVIITDQDRIVKSVVAEIFPNTHHCFFLWHVLGK VSENLGHVIKQHGNFMAKFEKCIYRSWTEEEFAKRWWKILDRFGLKDDEWMKSLYEDR RKWVPTYIMDVLLAGMSMVQRSESVNSFFDKYVHKKTTVQEFLKQYEAILQDRYEEEA KANSDSWSKLPTLKSPSPFEKSVAGLYTHTVFKKFQVEVVGAIACHPKPENHDATSSF FRVQDLEKNQDFIVTLNEMKSEVSCICRLYEYKGYLCRHAMVVLQINGHSAIPSQYIL KRWTKEAKSRHLMGDESEQVQSRVQRYNDLFQRAMKLIEEGSLSQESYYIAFRSLEEA FGNCLSANTSNKSLAEAVTSPTQGMICIEEDNQSRSTSKTNKKKNPTKKRKGNSEQEV MTVPATDGLQQMDKLSSRSVGLDGYFGAQTSVQGMVQLNLMAPRDNYYGNQQTIQGLG QLNTIAASHDGYYGPQQTMPGMGQMDFFRAPGFYIRDDTNVRAAQLHDDASRHA" CDS join(8685234..8686910,8687028..8687084,8687260..8687328, 8687405..8687470,8687560..8687628,8687721..8687756, 8687849..8687905) /locus_tag="TCM_013043" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG002030t1" /codon_start=1 /product="Far-red elongated hypocotyls 3 isoform 6" /protein_id="EOY21472.1" /db_xref="Phytozome:POPTR_0006s02150.1" /db_xref="TAIR:AT3G22170.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD60" /translation="MHVKRRPDGKWVVHSFVKEHNHELLPAQAVSEQTRRMYAAMARQ FAEYKNVVGLKNDPKNPFDKGRNLALEAGDVKILLEFFTHMQNINSNFFYAIDLGEDQ RLKSLFWVDAKSRHDYSYFCDVVSFDTTYVRNKYKMPLALFIGVNHHYQFMPLGCALV SDDSAATFSWLMQTWLKAMGGQSPRVIITDQDRIVKSVVAEIFPNTHHCFFLWHVLGK VSENLGHVIKQHGNFMAKFEKCIYRSWTEEEFAKRWWKILDRFGLKDDEWMKSLYEDR RKWVPTYIMDVLLAGMSMVQRSESVNSFFDKYVHKKTTVQEFLKQYEAILQDRYEEEA KANSDSWSKLPTLKSPSPFEKSVAGLYTHTVFKKFQVEVVGAIACHPKPENHDATSSF FRVQDLEKNQDFIVTLNEMKSEVSCICRLYEYKGYLCRHAMVVLQINGHSAIPSQYIL KRWTKEAKSRHLMGDESEQVQSRVQRYNDLFQRAMKLIEEGSLSQESYYIAFRSLEEA FGNCLSANTSNKSLAEAVTSPTQGMICIEEDNQSRSTSKTNKKKNPTKKRKGNSEQEV MTVPATDGLQQMDKLSSRSVGLDGYFGAQTSVQGMVQLNLMAPRDNYYGNQQTIQGLG QLNTIAASHDGYYGPQQTMPGMMDFFRAPGFYIRDDTNVRAAQLHDDASRHA" gene complement(8689917..8690613) /locus_tag="TCM_013044" /note="dbxref CacaoGD:Thecc1EG013044" mRNA complement(8689917..8690613) /locus_tag="TCM_013044" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS complement(8690285..8690527) /locus_tag="TCM_013044" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21477.1" /translation="MFKMFFFTIRKEPQVTPKAYILQKHDIKCDSGNSRQVSYGEGLG LRRVRFKASSVLGERCTGIGAFFSLAFSTRFLSILN" mobile_element 8691372..8691496 /note="source:INTACT741_F17_scaffold_3-int 9993 10116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8691644..8691715 /note="source:INTACT741_F17_scaffold_3-int 10126 10201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8691692..8691747 /note="source:INTACT167_F5_scaffold_2-int 13724 13773" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8693123..8695792 /note="source:CACAO_M_S_E17852_F231_scaffold_3 1 2670" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8696380..8700195 /note="source:INTACT74_F134_scaffold_5-int 1 3784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8700187..8700798 /note="source:INTACT642F_F365_scaffold_5-int 8602 9218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8704133..8706978 /note="source:CACAO_M_E12938_F15_scaffold_3 1 2846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8707381..8707402 /note="source:scaffold_2_CACTA_0259 5404 5422" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8707403..8708078 /note="source:CACAO_M_E43057_F322_scaffold_5 1 678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8710534..8710656) /note="source:CACAO_M_E52480_F98_scaffold_7 688 813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8716610..8718038) /note="source:CACAO_M_E11098_F15_scaffold_2 6234 7682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8718460..8718555 /note="source:INTACT1223F_F374_scaffold_6-int 1 95" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8719802..8719864 /note="source:INTACT506_F233_scaffold_3-int 1389 1862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8719865..8725516) /note="source:scaffold_2_CACTA_0259 925 6550" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8725517..8726330 /note="source:INTACT506_F233_scaffold_3-int 1863 8099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8725638..8728016) /note="source:INTACT518_F239_scaffold_2-int 1 2370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8727908..8728040 /note="source:CACAO_M_E58324_F9_scaffold_9 23969 24090" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8729190..8731820) /note="source:CACAO_M_E58324_F9_scaffold_9 7660 10224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8733016..8733407) /note="source:INTACT649F_F368_scaffold_5-int 1613 2008" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8734760..8740086 /note="source:CACAO_M_E33933_F9_scaffold_4 1 5194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8740491..8740505) /note="source:CACAO_M_E50239_F322_scaffold_7 2716 2727" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8740506..8745655 /note="source:CACAO_M_E12953_F322_scaffold_3 1 5150" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8749705..8750008 /note="source:CACAO_M_E12953_F322_scaffold_3 8307 8610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8750326..8750707 /note="source:CACAO_M_E12953_F322_scaffold_3 8611 8992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8752968..8753738) /note="source:CACAO_M_S_E90022_F9_scaffold_8 8518 9290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8753739..8759701 /note="source:INTACT17_F7_scaffold_3-int 1 5966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8759700..8762470 /note="source:CACAO_M_E22484_F328_scaffold_3 11520 14263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8762456..8766845 /note="source:CACAO_M_S_E31774_F7_scaffold_3 5535 9928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8766846..8768243) /note="source:CACAO_M_S_E90022_F9_scaffold_8 7123 8522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8768246..8769162 /note="source:CACAO_M_E24592_F195_scaffold_4 1459 2376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8769474..8770008) /note="source:INTACT41F_F338_scaffold_1-int 8407 8936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8769604..8770919 /note="source:CACAO_M_E24592_F195_scaffold_4 2552 3874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8770919..8774135 /note="source:CACAO_M_S_E16386_F9_scaffold_2 4174 7383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8774136..8774655 /note="source:CACAO_M_S_E101224_F9_scaffold_9 10503 11018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8774662..8775043 /note="source:INTACT694_F17_scaffold_5-int 1760 2137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8778147..8781651 /note="source:CACAO_M_E33018_F264_scaffold_4 2175 5728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8786654..8787291 /note="source:CACAO_M_E11098_F15_scaffold_2 1 639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8787292..8790019 /note="source:CACAO_M_E12964_F73_scaffold_3 1 2728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8790020..8792144 /note="source:CACAO_M_E11098_F15_scaffold_2 18303 20405" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8792274..8792323) /note="source:INTACT261_F189_scaffold_2-int 3406 3454" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8792604..8792933) /note="source:INTACT694_F17_scaffold_5-int 1182 1514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8792923..8794253) /note="source:CACAO_M_E33018_F264_scaffold_4 3375 4681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8794352..8796312) /note="source:CACAO_M_E33018_F264_scaffold_4 1423 3381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8796314..8797838 /note="source:CACAO_M_E33018_F264_scaffold_4 1 1547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8797840..8798139) /note="source:INTACT694_F17_scaffold_5-int 1092 1392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8798151..8798947) /note="source:CACAO_M_E33018_F264_scaffold_4 4438 5164" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8798918..8799133) /note="source:CACAO_M_E33018_F264_scaffold_4 4136 4368" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8804153..8810929 /note="source:INTACT511_F7_scaffold_4-int 1 6757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8810927..8811402 /note="source:CACAO_M_E42514_F40_scaffold_5 10291 10766" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8815212..8818516) /note="source:CACAO_M_E86305_F7_scaffold_15 1 3296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8821357..8821461) /note="source:CACAO_M_E5702_F90_scaffold_2 2005 2119" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8822586..8824188 /note="source:scaffold_2_CACTA_0261 1782 3282" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8823556..8824903 /note="source:CACAO_M_E58601_F7_scaffold_9 4321 5672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8825518..8827051) /note="source:CACAO_M_S_E4413_F3_scaffold_1 17022 18561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8827052..8832102 /note="source:CACAO_M_S_E124346_F13_scaffold_10 1 5087" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8832085..8845084 /locus_tag="TCM_013057" /note="dbxref CacaoGD:Thecc1EG013057" mRNA join(8832085..8832103,8834852..8835917,8843470..8845084) /locus_tag="TCM_013057" /product="DNA/RNA polymerases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400044090.27" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033277t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1936t4" mobile_element complement(8832100..8832132) /note="source:CACAO_M_E22348_F13_scaffold_3 9306 9338" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(8834881..8835917,8843470..8845069) /locus_tag="TCM_013057" /note="paralog of Thecc1EG033277t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY21478.1" /translation="MMATRMEDIQRVVEGRPTVQESPSSQGQADHQHHEEERGHLDIS LPDFLKLKPPTFSGSDASEKPQVFLDKMVKICKALGCSSVRSVELAAFQLEDVAQEWY SSLCRGRPTNATPLAWSEFSVAFLDRFLPLSVRNARAREFETLVQTSSMTVSEYDIKF TQLARYAPYLVSTEEMKIQRFVDGLVEPLFRAVASRDFTTYSAAVDRAQRIEMRTNES RAARDRAKRGKTEGYQGRRDFSSGGSSSSRQGPQRDSRLPQQGSDAPGANIRVGQRTF NSRRQQDSRQSSQVIRSCDTCGRRHSGRCFLTTKTCYGCGQPGHIRRDCPMAHQSPDS ARGSTQPASSAPPTSVTEIRSFVGLAGYYRRFVKDFSKIVAPLTKLTRKDTKFEWSDA CENSFEKLKACLTTAPVLSLPQGTGGYTVFCDASGVGLGCVLMQHGKVIAYASRQLKR HEQNYPIHDLEMAAIVFALKIWRHYLYGETCEIYTDHKSLKYIFQQRDLNLRQRRWME LLKDYDCTILYHPGKANVVADALSRKSMGSLAHIFIGRRSLVREIHSLGDIGVRLEVA ETNALLAHFRVRPILMDRIKEAQSKDEFVIKALEDPQGRKGKMFTKGTDGVLRYGTRL YVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQ QVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFL PVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTA FHPQTDGQSERTIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEAL YGRRCRSPIGWLEGGKKKPLGS" mobile_element 8851042..8851582 /note="source:CACAO_M_S_E99574_F14_scaffold_9 21347 21888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8851582..8854130 /note="source:CACAO_M_S_E146091_F272_scaffold_11 9604 12151" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8854131..8855174 /note="source:INTACT88_F12_scaffold_4-int 1267 2304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8854386..8856932) /note="source:CACAO_M_E12374_F44_scaffold_3 1 2586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8856933..8858235 /note="source:CACAO_M_S_E146091_F272_scaffold_11 12147 13444" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8858236..8861034) /note="source:CACAO_M_S_E85957_F12_scaffold_7 11238 13970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8861035..8862461 /note="source:CACAO_M_E58962_F13_scaffold_9 14099 15524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8862462..8863200) /note="source:CACAO_M_S_E4413_F3_scaffold_1 16261 17026" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8863196..8865644) /note="source:CACAO_M_S_E4413_F3_scaffold_1 1 2470" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8871766..8873183) /note="source:CACAO_M_E58324_F9_scaffold_9 32 1447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8873184..8875737 /note="source:CACAO_M_S_E17914_F144_scaffold_3 1 2554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8875738..8875773) /note="source:INTACT222_F33_scaffold_7-int 4356 4391" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8877139..8880770) /locus_tag="TCM_013059" /note="dbxref CacaoGD:Thecc1EG013059" mRNA complement(join(8877139..8877648,8877771..8878018, 8878178..8878322,8878514..8878635,8879207..8879250, 8880696..8880770)) /locus_tag="TCM_013059" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037173t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(8877430..8877648,8877771..8878018, 8878178..8878322,8878514..8878555)) /locus_tag="TCM_013059" /note="paralog of Thecc1EG037173t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21479.1" /translation="MPLTNLNACLYTLHEESTTIVELYLVEEEETSEIETEEESCDFK HSDESDDEFVDVDKVEVEVIRDEFVLDIEVILAIKAVLDIGVDVGVIPDVVIDNVRET LNIKVVHDVGVVTDDAKVTPINSCASSSLVPAHKDANSVSGTQMLWDFDDACNIGFKL ECLNDCRSRAKAFLNKSSLKKELENIATKTVSLRKHEVELQEQLDIFVNSISSLWNM" mobile_element 8878681..8879315 /note="source:CACAO_M_E49195_F17_scaffold_6 1 648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8879316..8882489) /note="source:INTACT1327F_F381_scaffold_8-int 6063 9257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8882484..8883364 /note="source:CACAO_M_E49195_F17_scaffold_6 644 1528" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8884782..8887086 /note="source:CACAO_M_E12989_F82_scaffold_3 1 2305" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8887347..8888115 /note="source:CACAO_M_E12989_F82_scaffold_3 2306 3074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8888572..8891599 /note="source:scaffold_6_CACTA_0711 3580 6596" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8891595..8892990 /note="source:CACAO_M_S_E14932_F233_scaffold_2 2619 4011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8892991..8894432) /note="source:INTACT155_F44_scaffold_4-int 9490 10934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8894349..8894446 /note="source:INTACT1327F_F381_scaffold_8-int 7549 7639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8894585..8894739) /note="source:CACAO_Mariner_E180_scaffold_6 7605 7761" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(8894740..8894774) /note="source:CACAO_M_E65323_F12_scaffold_9 9076 9275" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8894957..8896869 /note="source:CACAO_M_S_E6619_F15_scaffold_2 5 1917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8896803..8896877 /note="source:scaffold_2_CACTA_0256 13075 13150" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8896853..8896869) /note="source:scaffold_3_CACTA_0388 4427 4440" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8896870..8897256) /note="source:INTACT584_F15_scaffold_3-int 10903 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8900702..8903576) /note="source:CACAO_M_E5390_F15_scaffold_2 3321 6192" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8910079..8910289 /note="source:INTACT901F_F95_scaffold_6-int 12366 12552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8910290..8910358 /note="source:INTACT66F_F95_scaffold_2-int 1973 2041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8910459..8911377 /note="source:CACAO_M_E9677_F7_scaffold_2 8496 9414" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8912566..8912957 /note="source:CACAO_M_E3100_F85_scaffold_1 2400 2737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8912914..8916864 /note="source:scaffold_2_CACTA_0259 2153 6153" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8917493..8917549 /note="source:INTACT1223F_F374_scaffold_6-int 1 57" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8917924..8918901 /note="source:CACAO_M_E52239_F256_scaffold_7 20004 21001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8918902..8919663 /note="source:CACAO_M_S_E31635_F14_scaffold_3 14796 16667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8919664..8921199) /note="source:scaffold_5_CACTA_0591 4836 6364" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8921200..8921425 /note="source:CACAO_M_S_E31635_F14_scaffold_3 16668 17227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8921331..8921435) /note="source:CACAO_M_E1841_F5_scaffold_1 22974 23081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8921431..8921585 /note="source:CACAO_M_E52239_F256_scaffold_7 20995 21148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8921568..8922526) /note="source:scaffold_5_CACTA_0591 4833 5810" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8922817..8923739) /note="source:CACAO_M_E52239_F256_scaffold_7 20004 20919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8923711..8924216 /note="source:CACAO_M_E1841_F5_scaffold_1 16061 16577" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8924204..8924414 /note="source:CACAO_M_E1841_F5_scaffold_1 25567 25802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8926207..8926702) /note="source:CACAO_Again_on_S_E25_scaffold_1 3310 3786" /mobile_element_type="transposon:TIR/hAT" gene complement(8927477..8930689) /locus_tag="TCM_013063" /note="dbxref CacaoGD:Thecc1EG013063" mRNA complement(join(8927477..8928097,8928185..8928252, 8928364..8928492,8928576..8928703,8928804..8928943, 8929010..8929170,8930186..8930689)) /locus_tag="TCM_013063" /product="Purple acid phosphatase 17 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g06090.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011228t1" /inference="similar to AA sequence:Phytozome:Glyma08g06090.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01820t00002" mRNA complement(join(8927670..8928097,8928185..8928252, 8928364..8928492,8928576..8928703,8928804..8928911, 8929014..8929170,8930186..8930641)) /locus_tag="TCM_013063" /product="Purple acid phosphatase 17 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g06090.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011228t1" /inference="similar to AA sequence:Phytozome:Glyma08g06090.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2563t1; inference alignment:Newbler:10:TSA:cgbaL_g01820t00002" CDS complement(join(8927881..8928097,8928185..8928252, 8928364..8928492,8928576..8928703,8928804..8928911, 8929014..8929170,8930186..8930356)) /locus_tag="TCM_013063" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011228t1" /codon_start=1 /product="Purple acid phosphatase 17 isoform 2" /protein_id="EOY21481.1" /db_xref="Phytozome:Glyma08g06090.1" /db_xref="TAIR:AT3G17790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H129" /translation="MALWFMVGIICGLCFVCLSAELQRLEQPGKGDGSLSFLVVGDWG RRGSFNQSRVAFQMGKIGEKLDIDFVVSTGDNFYDNGLSSEHDTAFEESFTDVYTANS LQKQWYSVLGNHDYRGDAEAQLSPLLRKIDSRWLCLRSFIVNAELAEIIFVDTTPFVN TYFLDPEDHTYDWRGVTPRKPYIANLLKDVESALRESTATWKIVVGHHAIRSVGHHGD TEELVSHLLPILKANNVDFYMNGHDHCLEHISDTDSRIQFLTSGAGSKAWRGDVKQLN REGLSFFYDGQGFMSVQLTQSDAEIVFYDVYGNILHRLNASKQFLHSSM" CDS complement(join(8927881..8928097,8928185..8928252, 8928364..8928492,8928576..8928703,8928804..8928943, 8929010..8929170,8930186..8930356)) /locus_tag="TCM_013063" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011228t1" /codon_start=1 /product="Purple acid phosphatase 17 isoform 1" /protein_id="EOY21480.1" /db_xref="Phytozome:Glyma08g06090.1" /db_xref="TAIR:AT3G17790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H129" /translation="MALWFMVGIICGLCFVCLSAELQRLEQPGKGDGSLSFLVVGDWG RRGSFNQSRVAFQMGKIGEKLDIDFVVSTGDNFYDNGLSSEHDTAFEESFTDVYTANS LQKQWYSGKNMTANSLSYAVLGNHDYRGDAEAQLSPLLRKIDSRWLCLRSFIVNAELA EIIFVDTTPFVNTYFLDPEDHTYDWRGVTPRKPYIANLLKDVESALRESTATWKIVVG HHAIRSVGHHGDTEELVSHLLPILKANNVDFYMNGHDHCLEHISDTDSRIQFLTSGAG SKAWRGDVKQLNREGLSFFYDGQGFMSVQLTQSDAEIVFYDVYGNILHRLNASKQFLH SSM" mobile_element 8931657..8931815 /note="source:INTACT189_F49_scaffold_5-int 17863 18018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8933817..8934029 /note="source:INTACT546_F245_scaffold_7-int 2840 3047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8935194..8935257 /note="source:INTACT546_F245_scaffold_7-int 3042 3103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8935313..8935953 /note="source:INTACT189_F49_scaffold_5-int 13636 14351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8935959..8937781) /note="source:INTACT30F_F12_scaffold_1-int 11998 13781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8938675..8938980) /note="source:CACAO_M_E9978_F12_scaffold_2 768 1072" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8938928..8938990 /note="source:INTACT30F_F12_scaffold_1-int 319 380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8939010..8939215 /note="source:INTACT189_F49_scaffold_5-int 17397 17571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8939299..8939673 /note="source:INTACT189_F49_scaffold_5-int 17585 17971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8939671..8940317 /note="source:CACAO_M_E58324_F9_scaffold_9 7666 8345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8939674..8940520) /note="source:CACAO_M_E58819_F24_scaffold_9 15390 16268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8941947..8942247 /note="source:CACAO_M_E1841_F5_scaffold_1 16061 16364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8942248..8942952) /note="source:CACAO_M_E12347_F245_scaffold_3 2280 2985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8942953..8945689 /note="source:CACAO_M_E13013_F15_scaffold_3 1 2737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8945690..8946874 /note="source:CACAO_M_E9836_F245_scaffold_2 703 1886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8946875..8949705 /note="source:CACAO_M_E13014_F15_scaffold_3 1 2816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8949706..8957169 /note="source:CACAO_on_S_E58_scaffold_2 3631 11134" /mobile_element_type="transposon:TIR/Mutator" mobile_element 8952840..8958242 /note="source:INTACT546_F245_scaffold_7-int 4179 9626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8958248..8958445) /note="source:CACAO_M_E50525_F33_scaffold_7 3631 3838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8958438..8958577 /note="source:scaffold_3_CACTA_0382 11738 11876" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8960045..8960274) /note="source:INTACT189_F49_scaffold_5-int 18377 18610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8960781..8960838 /note="source:INTACT277_F12_scaffold_9-int 2069 2126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8965951..8966810 /note="source:CACAO_M_E1841_F5_scaffold_1 9608 10463" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8966811..8969769 /note="source:CACAO_M_E13020_F15_scaffold_3 1 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8969770..8970127 /note="source:CACAO_M_E1841_F5_scaffold_1 10469 10791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8970128..8981036 /note="source:CACAO_M_E13021_F15_scaffold_3 1 10909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8981037..8981684 /note="source:CACAO_M_E13604_F90_scaffold_3 9836 10514" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8981685..8983262 /note="source:INTACT262_F12_scaffold_3-int 8600 10138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8983298..8983721 /note="source:INTACT215F_F14_scaffold_3-int 11162 11581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8984866..8985228 /note="source:CACAO_M_E53587_F207_scaffold_8 2963 3319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8985233..8985899 /note="source:CACAO_M_E13604_F90_scaffold_3 10510 11162" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8986708..8987137) /note="source:CACAO_M_S_E89200_F13_scaffold_8 756 1124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8987098..8987810 /note="source:CACAO_M_E13604_F90_scaffold_3 10464 11159" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8992918..8995816 /note="source:CACAO_M_E3124_F323_scaffold_1 1 2891" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8995037..8999533 /locus_tag="TCM_013067" /note="dbxref CacaoGD:Thecc1EG013067" mRNA join(8995037..8995615,8996639..8996726,8998307..8998991, 8999329..8999533) /locus_tag="TCM_013067" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.30 coverage" mobile_element 8998802..8998933 /note="source:INTACT266_F12_scaffold_7-int 5022 5153" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(8998856..8998991,8999329..8999474) /locus_tag="TCM_013067" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21482.1" /translation="MNVNRDIATVVTGSMGVPGRDKSSQSYILLVNWSPRVIADQNLY FDLITVAHRGDAKVDAKPCGISIDIRGEECLSRPRGGCHGLYGEFRVVT" mobile_element complement(8998919..8999471) /note="source:CACAO_M_E43944_F323_scaffold_5 1 549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8999537..8999952) /note="source:CACAO_M_E52239_F256_scaffold_7 22040 22453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9002795..9003528) /note="source:CACAO_M_E52239_F256_scaffold_7 21267 22044" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9003529..9003594) /note="source:scaffold_1_CACTA_0011 7460 7524" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9003757..9003924 /note="source:INTACT120_F22_scaffold_3-int 8081 8231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9003778..9003923) /note="source:CACAO_M_E58819_F24_scaffold_9 15252 15398" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9003923..9004724) /note="source:CACAO_M_S_E52921_F60_scaffold_5 18417 19239" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9004739..9004886 /note="source:INTACT280_F60_scaffold_5-int 18874 19023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9005390..9010508) /note="source:CACAO_M_S_E64832_F14_scaffold_5 4572 9737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9010509..9029248 /note="source:CACAO_M_E13038_F22_scaffold_3 1 18740" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9022807..9102881) /locus_tag="TCM_013070" /note="dbxref CacaoGD:Thecc1EG013070" mRNA complement(join(9022807..9023092,9102262..9102638, 9102751..9102881)) /locus_tag="TCM_013070" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043574t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2561t3" mobile_element complement(9029249..9029435) /note="source:INTACT170_F12_scaffold_5-int 1968 2154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9029405..9029677) /note="source:CACAO_M_S_E31635_F14_scaffold_3 4456 4740" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9029438..9031660 /note="source:CACAO_M_E65323_F12_scaffold_9 7739 11511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9031889..9034081 /note="source:INTACT135F_F90_scaffold_2-int 5635 7852" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9034030..9034056) /note="source:CACAO_M_E22348_F13_scaffold_3 9335 9353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9034057..9036692 /note="source:CACAO_M_S_E17986_F319_scaffold_3 1 2636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9036693..9037616 /note="source:CACAO_M_S_E6027_F12_scaffold_2 3722 4647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9037605..9037961) /note="source:INTACT170_F12_scaffold_5-int 1312 1674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9037963..9038290 /note="source:CACAO_M_E43672_F60_scaffold_5 10454 10781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9038277..9044222 /note="source:CACAO_M_E43672_F60_scaffold_5 5933 11896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9044224..9046829 /note="source:CACAO_M_S_E17988_F231_scaffold_3 1 2606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9046830..9048338 /note="source:CACAO_M_E43672_F60_scaffold_5 3876 5384" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9048339..9048477) /note="source:INTACT170_F12_scaffold_5-int 1178 1316" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9048366..9048501 /note="source:CACAO_M_E3248_F5_scaffold_1 18725 18866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9048477..9050427) /note="source:INTACT288_F14_scaffold_2-int 1 1988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9051569..9051650 /note="source:INTACT189_F49_scaffold_5-int 17821 17903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9058737..9059109) /note="source:CACAO_M_E52239_F256_scaffold_7 22073 22442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9059104..9059899) /note="source:INTACT295_F13_scaffold_9-int 6462 7257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9059954..9060072 /note="source:CACAO_Mariner_E229_scaffold_9 10869 10979" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 9059972..9060157 /note="source:CACAO_M_E3326_F17_scaffold_1 6919 7097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9060191..9060944 /note="source:CACAO_M_E3248_F5_scaffold_1 1653 2360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9061551..9061705 /note="source:CACAO_M_E33282_F13_scaffold_4 11509 11630" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9061706..9071898 /note="source:INTACT196F_F12_scaffold_3-int 1 10193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9075454..9076990 /note="source:CACAO_M_S_E109853_F60_scaffold_9 4796 6307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9076860..9078141) /note="source:CACAO_M_S_E64832_F14_scaffold_5 10135 11269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9077425..9080927 /note="source:CACAO_M_S_E109853_F60_scaffold_9 6509 10029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9080928..9083899 /note="source:CACAO_M_S_E18010_F7_scaffold_3 1 2972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9083900..9085763 /note="source:CACAO_M_S_E109853_F60_scaffold_9 10025 11890" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9085765..9086405 /note="source:INTACT563_F255_scaffold_10-int 16667 17305" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9086331..9087060 /note="source:CACAO_M_E3248_F5_scaffold_1 1651 2360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9086333..9087215) /note="source:INTACT170_F12_scaffold_5-int 5936 6822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9087845..9089366) /note="source:CACAO_M_E3326_F17_scaffold_1 1 1520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9089604..9089759 /note="source:INTACT242_F12_scaffold_1-int 1776 1935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9089876..9089969 /note="source:INTACT120_F22_scaffold_3-int 7025 7119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9089888..9090790) /note="source:INTACT537_F22_scaffold_2-int 12271 13175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9090836..9090909 /note="source:CACAO_M_E41928_F52_scaffold_5 7934 8001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9090919..9090992 /note="source:CACAO_M_E41928_F52_scaffold_5 7934 8001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9091006..9091112) /note="source:CACAO_M_S_E83691_F15_scaffold_6 2809 2911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9091100..9091136) /note="source:scaffold_6_CACTA_0710 14632 14668" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9091150..9093123) /note="source:CACAO_M_S_E84336_F318_scaffold_6 1 1958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9094162..9096762 /note="source:CACAO_M_E84252_F247_scaffold_10 1 2596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9097563..9097916) /note="source:scaffold_4_CACTA_0494 5063 5416" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9100997..9101111) /note="source:INTACT1332F_F13_scaffold_8-int 12342 12454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9101094..9101341 /note="source:CACAO_M_S_E122077_F328_scaffold_10 1075 1319" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(9102273..9102638,9102751..9102831)) /locus_tag="TCM_013070" /note="paralog of Thecc1EG043574t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21483.1" /translation="MVLLQFEEGKREFLLQFWRKKKTKNFELKILEVLLALKGSKVLP ICAEKLELFAANLCRKIGAVFCRKIRAIFCRKIGAICAEKLELFAANLCRKIGQHCAT NLREKKQLGAAKFLRKRELKVLPPEEEENDPRKRGSHGGEERKTWW" mobile_element complement(9103918..9104566) /note="source:scaffold_2_CACTA_0262 16034 16705" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9104541..9104648) /note="source:INTACT146F_F14_scaffold_2-int 13446 13526" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9105522..9107381) /note="source:INTACT405F_F91_scaffold_4-int 5740 7604" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9106629..9107470 /note="source:CACAO_M_S_E87920_F323_scaffold_7 732 1559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9107881..9108932 /note="source:CACAO_M_E43781_F323_scaffold_5 2419 3457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9108933..9108989) /note="source:CACAO_M_S_E14444_F98_scaffold_2 2021 2063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9109562..9109767 /note="source:CACAO_M_E24592_F195_scaffold_4 20643 20733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9110255..9110426 /note="source:CACAO_M_E3326_F17_scaffold_1 11769 11951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9110571..9111681 /note="source:CACAO_M_E45167_F85_scaffold_6 6663 7774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9111782..9112791) /note="source:CACAO_M_E4668_F85_scaffold_2 8129 9148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9112792..9113343) /note="source:INTACT405F_F91_scaffold_4-int 7031 7603" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9114758..9114793) /note="source:CACAO_M_E52639_F333_scaffold_7 1861 1896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9114785..9118243) /note="source:CACAO_M_E3859_F82_scaffold_1 4002 7468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9118344..9118682 /note="source:CACAO_M_S_E87920_F323_scaffold_7 5673 6011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9121598..9122596 /note="source:INTACT1432F_F101_scaffold_9-int 15869 16864" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 9124487..9125463 /note="source:CACAO_M_E24592_F195_scaffold_4 1443 2361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9125520..9125900 /note="source:CACAO_M_E69603_F54_scaffold_9 632 1067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9125901..9127468) /note="source:CACAO_M_E44143_F323_scaffold_5 1916 3479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9127812..9127996) /note="source:CACAO_M_E52472_F323_scaffold_7 1384 1568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9129370..9130555) /note="source:CACAO_M_E50949_F323_scaffold_7 1 1185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9130556..9130874) /note="source:INTACT649F_F368_scaffold_5-int 10762 11080" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9130660..9131860 /note="source:CACAO_M_E42641_F14_scaffold_5 11460 12660" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9132246..9142881 /locus_tag="TCM_013082" /note="dbxref CacaoGD:Thecc1EG013082" mRNA join(9132246..9132523,9133018..9133230,9133454..9133589, 9135227..9135378,9135468..9135515,9135650..9135742, 9136473..9136579,9137385..9137499,9137604..9137690, 9138455..9138659,9138783..9138877,9139825..9139893, 9139975..9140082,9140183..9140301,9140536..9140631, 9142626..9142881) /locus_tag="TCM_013082" /product="TCP-1/cpn60 chaperonin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031067001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019490t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031067001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc81t5" mRNA join(9132888..9133230,9133454..9133589,9135227..9135378, 9135468..9135518,9135650..9135742,9136473..9136579, 9137385..9137499,9137604..9137690,9138455..9138659, 9138783..9138877,9139825..9139893,9139975..9140082, 9140183..9140301,9140536..9140999) /locus_tag="TCM_013082" /product="TCP-1/cpn60 chaperonin family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031067001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019490t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031067001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2903t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc81t5" CDS join(9133033..9133230,9133454..9133589,9135227..9135378, 9135468..9135518,9135650..9135742,9136473..9136579, 9137385..9137499,9137604..9137690,9138455..9138659, 9138783..9138877,9139825..9139893,9139975..9140082, 9140183..9140301,9140536..9140611) /locus_tag="TCM_013082" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019490t1" /codon_start=1 /product="TCP-1/cpn60 chaperonin family protein isoform 2" /protein_id="EOY21485.1" /db_xref="Phytozome:GSVIVT01031067001" /db_xref="TAIR:AT3G02530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFR8" /translation="MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIK MLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELM KQSERYIDEGMHPRVLVDGFEIAKRAILQFLEKFKTPVVMGTEPDKEILKMVARTTLR TKLYEALADQLTDIVVNAVVLCIQKPDEPFDLFMVEIMHMRHKFDVDTRLVEGLVLDH GSRHPDMKRRAENCYILTCNVSLEYEKSEINAGFFYSNAEQREAMVAAERHAVDERVK KIIELKDKVCAGTDNNFVVINQKGIDPPSLHLLQQAGIIALRRAKRRNMERLVLSCGG EAVNSVDDLTPDCLGWAGLVYEHVLGEDKYTFVENVKNPHSCTILIKGPNDHTIAQIK DAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLINEVKKTVQGRAQLGVEAFADALL VVPKTLAENAGLDTQDVIIGLTGEHDRGNIVGLNHQTGEPMDPQMEGIFDNYSVKRQI INSGPVIASQLLLVDEVIRAGRNMRKPT" CDS join(9133033..9133230,9133454..9133589,9135227..9135378, 9135468..9135515,9135650..9135742,9136473..9136579, 9137385..9137499,9137604..9137690,9138455..9138659, 9138783..9138877,9139825..9139893,9139975..9140082, 9140183..9140301,9140536..9140611) /locus_tag="TCM_013082" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019490t1" /codon_start=1 /product="TCP-1/cpn60 chaperonin family protein isoform 1" /protein_id="EOY21484.1" /db_xref="Phytozome:GSVIVT01031067001" /db_xref="TAIR:AT3G02530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFR8" /translation="MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIK MLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELM KQSERYIDEGMHPRVLVDGFEIAKRAILQFLEKFKTPVVMGTEPDKEILKMVARTTLR TKLYEALADQLTDIVVNAVLCIQKPDEPFDLFMVEIMHMRHKFDVDTRLVEGLVLDHG SRHPDMKRRAENCYILTCNVSLEYEKSEINAGFFYSNAEQREAMVAAERHAVDERVKK IIELKDKVCAGTDNNFVVINQKGIDPPSLHLLQQAGIIALRRAKRRNMERLVLSCGGE AVNSVDDLTPDCLGWAGLVYEHVLGEDKYTFVENVKNPHSCTILIKGPNDHTIAQIKD AVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLINEVKKTVQGRAQLGVEAFADALLV VPKTLAENAGLDTQDVIIGLTGEHDRGNIVGLNHQTGEPMDPQMEGIFDNYSVKRQII NSGPVIASQLLLVDEVIRAGRNMRKPT" mobile_element 9135088..9135173 /note="source:CACAO_M_E24018_F98_scaffold_4 2036 2107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9151662..9151904 /note="source:scaffold_8_CACTA_0859 16186 16471" /mobile_element_type="transposon:TIR/CACTA" gene complement(9151909..9153152) /locus_tag="TCM_013083" /note="dbxref CacaoGD:Thecc1EG013083" mRNA complement(9151909..9153152) /locus_tag="TCM_013083" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(9152059..9152361) /locus_tag="TCM_013083" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21486.1" /translation="MIKRQNIFTKLGHNRRPTGQHHKSIQSAALPINFKPFEGKLPGL NNSLILSTPTPSIKHCNLFFYLQLKPLATHQLTGNSIFNAINKFQSLFFLRYHKDG" mobile_element complement(9161244..9161515) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18506 18790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9161845..9162053) /note="source:CACAO_M_E5899_F5_scaffold_2 19983 20165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9162054..9163231 /note="source:CACAO_M_E56252_F15_scaffold_8 1 1192" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9163228..9163422) /note="source:CACAO_M_E13167_F15_scaffold_3 1189 1385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9163460..9163642 /note="source:CACAO_M_E52687_F15_scaffold_7 2648 2830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9172438..9177704) /note="source:CACAO_M_E3746_F14_scaffold_1 4323 9679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9181131..9182150 /note="source:INTACT95_F143_scaffold_9-int 1 1019" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9182245..9185194 /note="source:CACAO_M_E13091_F44_scaffold_3 1 2950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9185269..9187067 /note="source:INTACT95_F143_scaffold_9-int 1150 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9190756..9192924 /note="source:CACAO_M_S_E5676_F7_scaffold_2 1 2170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9192925..9193936) /note="source:INTACT739_F9_scaffold_8-int 418 1428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9193937..9197065 /note="source:CACAO_M_E59738_F82_scaffold_9 6916 10048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9196910..9197144) /note="source:CACAO_M_E42167_F82_scaffold_5 1 212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9197054..9197164 /note="source:CACAO_M_E69236_F12_scaffold_9 11253 11360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9197145..9204977) /note="source:INTACT630_F9_scaffold_5-int 1060 8877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9204973..9207249) /note="source:INTACT95_F143_scaffold_9-int 8022 10297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9207248..9215097) /note="source:CACAO_M_E33228_F15_scaffold_4 1146 9018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9215098..9216430) /note="source:CACAO_M_E45094_F15_scaffold_6 1 1331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9216431..9217488) /note="source:INTACT222_F33_scaffold_7-int 4356 5411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9217486..9218312 /note="source:INTACT95_F143_scaffold_9-int 6573 7403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9218314..9218686 /note="source:scaffold_2_CACTA_0273 1861 2234" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9218687..9221640 /note="source:CACAO_M_E13099_F247_scaffold_3 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9221641..9223009) /note="source:scaffold_1_CACTA_0006 6076 7460" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9225037..9225972) /note="source:CACAO_M_E56246_F323_scaffold_8 563 1495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9229910..9233756) /note="source:INTACT759_F323_scaffold_6-int 1 3829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9233757..9237429 /note="source:scaffold_5_CACTA_0606 3981 7653" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9236970..9237582) /note="source:scaffold_2_CACTA_0279 563 1180" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9237511..9237880 /note="source:scaffold_5_CACTA_0606 7630 8006" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9238000..9241317 /note="source:CACAO_M_E50309_F82_scaffold_7 1 3333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9246803..9247796) /note="source:INTACT670_F33_scaffold_3-int 8638 9631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9249049..9250733) /note="source:INTACT670_F33_scaffold_3-int 5759 7443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9251829..9252138 /note="source:CACAO_M_E1489_F33_scaffold_1 6279 6588" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9255147..9255710) /note="source:CACAO_M_E53452_F33_scaffold_8 8023 8587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9257905..9258553) /note="source:CACAO_M_E43872_F85_scaffold_5 1495 2143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9259965..9260693 /note="source:CACAO_M_E43881_F82_scaffold_5 2609 3337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9260707..9260860 /note="source:scaffold_5_CACTA_0606 7735 7892" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9260875..9261749 /note="source:scaffold_5_CACTA_0606 8805 9683" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9263417..9263910 /note="source:scaffold_2_CACTA_0273 8502 9076" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9264801..9266740 /note="source:scaffold_3_CACTA_0385 2011 3995" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9266915..9267952 /note="source:CACAO_M_E3745_F17_scaffold_1 491 1540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9273442..9273906) /note="source:CACAO_M_S_E4534_F4_scaffold_1 4312 4776" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9273888..9275530) /note="source:CACAO_M_S_E4534_F4_scaffold_1 2499 4138" /mobile_element_type="retrotransposon:LTR/Copia" gene 9275053..9288872 /locus_tag="TCM_013096" /note="dbxref CacaoGD:Thecc1EG013096" mRNA join(9275053..9275055,9275583..9275761,9276003..9276168, 9288710..9288872) /locus_tag="TCM_013096" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element 9275487..9275538 /note="source:CACAO_M_S_E109732_F233_scaffold_9 2707 2761" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(9275690..9275761,9276003..9276167) /locus_tag="TCM_013096" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21487.1" /translation="MYCSRVVTATLVMCEKLHEFSSSVGVGDDHPTGRGVILEDLIVG LQSLAHEFAEFHNRDEAHSVEWVDSSSQDLEYLP" mobile_element complement(9277495..9284673) /note="source:CACAO_M_S_E101224_F9_scaffold_9 4826 12027" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9289684..9292270) /note="source:CACAO_M_S_E18857_F335_scaffold_3 1 2609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9293467..9294051 /note="source:CACAO_M_S_E19828_F19_scaffold_3 8438 8973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9293574..9300511) /note="source:INTACT506_F233_scaffold_3-int 1755 8691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9297409..9301410 /note="source:INTACT518_F239_scaffold_2-int 4834 12310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9301407..9301926 /note="source:CACAO_M_S_E19044_F233_scaffold_3 2295 2814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9301863..9301936) /note="source:scaffold_4_CACTA_0489 4127 4203" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9302070..9304736) /note="source:CACAO_M_E13416_F345_scaffold_3 1 2679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9306377..9307058) /note="source:CACAO_M_E5627_F4_scaffold_2 1 682" /mobile_element_type="retrotransposon:LTR/Copia" gene 9310739..9313885 /locus_tag="TCM_013099" /note="dbxref CacaoGD:Thecc1EG013099" mRNA join(9310739..9311037,9311113..9311147,9311229..9311337, 9311502..9311651,9311859..9311908,9312028..9312192, 9312596..9312902,9313207..9313320,9313378..9313885) /locus_tag="TCM_013099" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(9310968..9311037,9311113..9311147,9311229..9311337, 9311502..9311651,9311859..9311908,9312028..9312192, 9312596..9312902,9313207..9313320,9313378..9313793) /locus_tag="TCM_013099" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21488.1" /translation="MVPTAEQSAANQERRETRAVAMRDKLDEIETNMEQELILAMRQE IVELRDEITSLRVVTLGDECINKYHLKGDDAMLSLGKLASRLGKSFRRNYESNFILSM RTMKPVESLEDCHNTVRSGRPKRRGRALEIRIGILKKAKLVVIAFEEDKQDLEARKLG LIVFGAIQQKRFTQRWGLMFTDIKINGQKIEALENQATEYEKALIKVLEMLKTSGDMM LASLQNRLPPQREIDHHIDVVLETHPPAHTSYRMSPPEFVKLKKQLGELLDAGFIQPS KSPYGSQFYSSENMTEPYFYDIVIYSKTLEEHVQHIRLAMGTLREHELYVKNEKCSFD PNKVKAILEWEPPTKVMELRSFLGLANYYRRFVKGYFVVTAPLTEMLKKGITWKWSTR SQQAFNALKQAICAKSVLALPDHTKSYEVHTDALDFAIKGVLIQEGHLVAYESRKLND IEKRYIVQEKEMTVIVHYFRT" gene complement(9313954..9326513) /locus_tag="TCM_013100" /note="dbxref CacaoGD:Thecc1EG013100" mRNA complement(join(9313954..9313977,9316119..9316727, 9326420..9326513)) /locus_tag="TCM_013100" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element 9313978..9316093 /note="source:CACAO_M_E11656_F17_scaffold_2 2011 4139" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(9316190..9316435) /locus_tag="TCM_013100" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21489.1" /translation="MLEKNCGSKEVAPWGRWAHRLASRLGAQASERTGHTGHQKKNAQ HSRQTNVKLGHVDGQGNLFDAWEPLASLGLPVTGLEH" mobile_element 9318049..9319557 /note="source:CACAO_M_S_E14747_F17_scaffold_2 1 1505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9323420..9324250 /note="source:scaffold_3_CACTA_0385 795 1639" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9324473..9324663) /note="source:CACAO_M_E72867_F9_scaffold_10 526 718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9324648..9324935 /note="source:CACAO_M_E36185_F9_scaffold_5 1156 1443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9327125..9329808 /note="source:CACAO_M_E24592_F195_scaffold_4 19420 20971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9329808..9330890) /note="source:INTACT88_F12_scaffold_4-int 11867 12927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9331137..9331407) /note="source:INTACT88_F12_scaffold_4-int 11543 11813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9331476..9331611) /note="source:INTACT88_F12_scaffold_4-int 11421 11554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9334131..9334235 /note="source:CACAO_M_E10603_F306_scaffold_2 8401 8505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9335237..9335343 /note="source:CACAO_M_S_E6875_F7_scaffold_2 10336 10442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9336312..9336352) /note="source:INTACT88_F12_scaffold_4-int 11867 11907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9336595..9336869) /note="source:INTACT88_F12_scaffold_4-int 11543 11817" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9339283..9340255) /locus_tag="TCM_013103" /note="dbxref CacaoGD:Thecc1EG013103" mRNA complement(9339283..9340255) /locus_tag="TCM_013103" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.71 coverage" CDS complement(9339535..9339801) /locus_tag="TCM_013103" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21490.1" /translation="MFTLDEICGSIVTHELQMKKEELEEKIEAKEKKKNLALKISTLE EELEDLSSDDDEELAMMARRFRKFMGRKSRRFGRKNLKKDQGFF" mobile_element 9340732..9341279 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9341319..9341954 /note="source:CACAO_M_S_E7818_F60_scaffold_2 2968 3314" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9341762..9342607 /note="source:scaffold_1_CACTA_0011 7522 8364" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9342575..9343178 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6998 7599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9346742..9346957) /note="source:INTACT695_F301_scaffold_5-int 3565 3754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9347138..9351405 /note="source:CACAO_M_E42395_F3_scaffold_5 5740 10000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9351406..9357026 /note="source:INTACT765_F324_scaffold_1-int 1194 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9356933..9359076) /note="source:INTACT1421F_F389_scaffold_9-int 2194 4334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9359078..9361170) /note="source:CACAO_M_E10599_F78_scaffold_2 710 2841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9361171..9361805) /note="source:CACAO_M_E50311_F328_scaffold_7 5822 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9362112..9364671) /note="source:CACAO_M_E50311_F328_scaffold_7 3291 5835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9364684..9365509 /note="source:CACAO_M_E65104_F7_scaffold_9 2100 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9365510..9367755 /note="source:INTACT88_F12_scaffold_4-int 1898 4131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9367753..9369471 /note="source:CACAO_M_E13172_F96_scaffold_3 4877 6596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9369464..9369604) /note="source:scaffold_3_CACTA_0384 4 145" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9370409..9371098 /note="source:scaffold_1_CACTA_0011 8318 9025" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9371100..9372471) /note="source:CACAO_M_E58601_F7_scaffold_9 4313 5673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9372134..9373004) /note="source:scaffold_3_CACTA_0384 8201 9100" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9372856..9373024) /note="source:INTACT1827F_F98_scaffold_15-int 335 492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9373050..9373086) /note="source:scaffold_9_CACTA_0931 13096 13128" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9373087..9374010) /note="source:INTACT51F_F15_scaffold_1-int 10334 11259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9374111..9375373) /note="source:CACAO_M_E43590_F7_scaffold_5 7481 8743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9375769..9376260) /note="source:INTACT51F_F15_scaffold_1-int 1 492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9376261..9376565 /note="source:INTACT88_F12_scaffold_4-int 4158 4462" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9377496..9379249) /note="source:INTACT88_F12_scaffold_4-int 12216 13988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9380189..9380846 /note="source:CACAO_M_E50311_F328_scaffold_7 5822 6454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9380846..9382610 /note="source:scaffold_1_CACTA_0011 3983 5746" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9391899..9391961) /note="source:scaffold_2_CACTA_0262 718 777" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9392050..9392086) /note="source:scaffold_2_CACTA_0262 695 731" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9397544..9398580 /note="source:INTACT223_F175_scaffold_5-int 6205 7245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9399331..9406153 /note="source:INTACT223_F175_scaffold_5-int 1028 7572" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9399772..9405290 /locus_tag="TCM_013113" /note="dbxref CacaoGD:Thecc1EG013113" mRNA join(9399772..9400454,9400548..9400765,9400860..9401073, 9401320..9402183,9402261..9402747,9402862..9403326, 9403732..9403984,9404378..9405067,9405241..9405290) /locus_tag="TCM_013113" /product="Retrotransposon protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013924t1" /inference="similar to AA sequence:Phytozome:Glyma0023s00200.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc1817t37_G2" CDS join(9400206..9400454,9400548..9400765,9400860..9401073, 9401320..9402183,9402261..9402747,9402862..9403326, 9403732..9403984,9404378..9405065) /locus_tag="TCM_013113" /note="paralog of Thecc1EG013924t1" /codon_start=1 /product="Retrotransposon protein, putative" /protein_id="EOY21491.1" /db_xref="Phytozome:Glyma0023s00200.1" /translation="MSPRTRATSRWMEEQNASTYMVNRPLASTLRGRGRRGRATRSVR VDTFVSRREEGQSSSDVDRQPTGGITIEDLAAGLQGVNRANHQHHEVEKGQLEISLPD FLKLEPPSFSRFNASEKPQIFLDMMEKICKALGCSSVRSLELAAFRLEDVAQECVRNA RAREFETLLQTSSMIVSEYDIKFTQLVRYAPYPISTEEMKIQRFVDGLVEPLFRVVAS QDFNTYSAVGSQVIHPCNTCGGQHRGRCLRATGVCFLCGQPGQIWRNCLMAHQSQGSA RGSTQPTSFAPSVATSSNREASESRGISAGTFSQGRPSRFGHQSSVGKGQARVFALTP QEAQTSNIMVSSTLSVSNMDAQVLFDLGATHSFISQCFASCLGKYRARREEQLTVSTP LNEVFVAEWEYESCVVRVEDKNTLVNLVVLDTLDFDVILGMDWLASCHASVDCYHKLV KFDFPGEPSFNIQGDRSNFPTNLISIMSTRKLLRQGCLGYLAVVKDTQAKVGDISQVS VVNEFKDTYIHTPIRMAPAELKELKDQLEDLLDKGFIRPSVSPWGALVLFVKKKDGSL RLCIDYRQLNKVTVKNKYSLPRIDDLFDQLQGAQCFSKIDLQSGYHQLRIQNEAIPKT TFRTRYGHYEFLVMSFGLTNALAAFMDLMNWVFKPYLDKFVVVFIDDILIYSKRHVVS KDGVQVDPKKVKVVEKWPRQTSVSEIRSFLGLACYYRRFVKDFSKIVFPLTKLTCKDT KFEWSDACENSFEKLKACLTTAPVLSLPQGTRGYTVFCDALQIGLGCVLMQHGKVIEY ASRQLKRHEQNYLAHDLEMAAIVFALKFWRHYLYGTDGVMRYGTRIYVPASDGLRREI LEEAHMAAYVVHPSATKMYQDLKEVYWWEGLKKDVTEFVSKCLVCQQVKAEHQRPAGL LQLWDRYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLKVGERKLLGPELVQD ATKKIRMIRQRMLIAQSRQKSYVDNRRRDLEFQVGDHVFLKVSPTKGIMRFGKKGKLS PQYIGPFEILERVGAVAYRLALPPDLSNIHPVFHVSILRKYNSDPSHVIWYETIQLNN DLTYEKQPVAILDRQVKKLHSKEIALVKVLWRNHTSEEVTWEAEEEMRTKYPHLFNM" mobile_element complement(9411806..9412002) /note="source:CACAO_M_E52278_F17_scaffold_7 3054 3220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9412077..9413119 /note="source:CACAO_M_E3326_F17_scaffold_1 11848 12899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9413103..9413151 /note="source:scaffold_8_CACTA_0858 10698 11175" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9413152..9413576) /note="source:CACAO_M_E12297_F14_scaffold_3 8771 9195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9415994..9416850 /note="source:CACAO_M_E72867_F9_scaffold_10 28 856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9417120..9418658 /note="source:CACAO_M_E72867_F9_scaffold_10 1063 2610" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9418997..9420249) /locus_tag="TCM_013114" /note="dbxref CacaoGD:Thecc1EG013114" mRNA complement(join(9418997..9419278,9419438..9419786, 9420111..9420249)) /locus_tag="TCM_013114" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038855t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(9419063..9419278,9419438..9419746)) /locus_tag="TCM_013114" /note="paralog of Thecc1EG038855t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21492.1" /translation="MPIVREFYANANEHHNGSGFAHGKFVPFTVDDINDYFEIPNDVI DEYFTLKPDYKEIINYLCKGNREWKIFKGLPVSIKSNKLHGAYKCWFYFIIARLFLVK HRVGVEWGSREELFYLKGPIDDGIMEKYVQQESSTAGGNSSIVRPKHHVLRFCPSRKE WSDLNLHGPSCVVL" mobile_element complement(9424976..9425604) /note="source:CACAO_M_E52278_F17_scaffold_7 1302 1964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9426158..9427419) /note="source:CACAO_M_E52278_F17_scaffold_7 11544 12755" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9427251..9428723) /locus_tag="TCM_013116" /note="dbxref CacaoGD:Thecc1EG013116" mRNA complement(join(9427251..9427657,9427944..9428449, 9428599..9428723)) /locus_tag="TCM_013116" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002379t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(9427386..9427657,9427944..9428430)) /locus_tag="TCM_013116" /note="paralog of Thecc1EG002379t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21493.1" /translation="MAPPKRYKLIAQRGQSSSSSTTRFQALNFPNVLVYECYKNLFAS RVVYHSWVIDLKFLEAFSFPYNENFRNLDWHDYLSLNIPMFEKLVRVFYSNASVNYKD ENDALRTYDNAFTTYIMGRLFKITLELIRNAFGLHSAPDAMTHISDNLVEQDLERALC EPFSQSKIWNLDRAIISRMGYTEYVETSICVHKRARQKNAGNYNDDEDIPSAALTKPS SSAMPSSSIANMGTDARLDLCLCNLVLATKTNTS" gene 9428788..9445977 /locus_tag="TCM_013117" /note="dbxref CacaoGD:Thecc1EG013117" mRNA join(9428788..9428835,9435786..9436621,9436743..9436819, 9437412..9437457,9437777..9437930,9444605..9444689, 9445250..9445905) /locus_tag="TCM_013117" /product="Homeodomain-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s03900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016792t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s03900.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2609t4" gene complement(9430420..9432195) /locus_tag="TCM_013118" /note="dbxref CacaoGD:Thecc1EG013118" mRNA complement(join(9430420..9430844,9430938..9431086, 9432032..9432195)) /locus_tag="TCM_013118" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023697t1" /inference="similar to AA sequence:Phytozome:Sb07g011900.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(join(9430607..9430844,9430938..9431086, 9432032..9432079)) /locus_tag="TCM_013118" /note="paralog of Thecc1EG023697t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21498.1" /db_xref="Phytozome:Sb07g011900.1" /translation="MGCTNAIHEEERWIDELRIKKENVPKTAFRTRYGHYEFLVMSFE LTNVLVAFMVIMNQVLKPCLDKEHRLYTKFFKCELWLDSVTFLGHIVLKEGMKVDLKK IKVVEKWLRPTLVIEIWSFLCLAEYYRKFVKDFSKIATPMAI" mRNA join(9435447..9436621,9436743..9436819,9437412..9437457, 9437777..9437930,9445250..>9445273) /locus_tag="TCM_013117" /product="Homeodomain-like superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s03900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016792t4" /inference="similar to AA sequence:Phytozome:POPTR_0012s03900.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1598t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2609t4" mRNA join(9435523..9436621,9436743..9436819,9437409..9437457, 9437777..9437930,9444608..9444689,9445250..9445977) /locus_tag="TCM_013117" /product="Homeodomain-like superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s03900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016792t3" /inference="similar to AA sequence:Phytozome:POPTR_0012s03900.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2609t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2609t4" mRNA join(9435523..9436621,9436743..9436819,9437412..9437457, 9437777..9437930,9444608..9444689,9445250..9445977) /locus_tag="TCM_013117" /product="Homeodomain-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s03900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016792t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s03900.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2609t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2609t4" CDS join(9435826..9436621,9436743..9436819,9437409..9437457, 9437777..9437930,9444608..9444689,9445250..9445366) /locus_tag="TCM_013117" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG016792t3" /codon_start=1 /product="Homeodomain-like superfamily protein, putative isoform 3" /protein_id="EOY21496.1" /db_xref="Phytozome:POPTR_0012s03900.1" /db_xref="TAIR:AT5G16560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N391" /translation="MSHKGGFSKQSLNRIPDLSLHISPPNSAPSSICTGTNEGDSSFD IWRKDDGLKSHSDSSIKAGSQADTELSLANPASSALEAESPWQRNFAGGVTDDDQIKH RNLLKRGNTNSGQLSNINHGISLLDVSGLKPIKGIPVYNNSMSFPFSSSDSLVDMDPN KLRFYHQSCPSYNCSSSTSAVLHSPDAYRIGSAPRFNGISMETLRPQFHHQYTQYGAA DLCNGMIRSRFMPKLQSKRTMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELM DVKDLTLAHVKSHLQQMYRTVKSTDKPAASSDGSGEEDYLPARNTISQIANCSVNQRS SASPNLSIQQDNGHSPTNLWSNSSRGVWLSSSRNPDGFRPDAPSSQPGNQIEESSFAK QKILTGSSLELHNPSLDFSLGRPDWQRKERDS" CDS join(9435826..9436621,9436743..9436819,9437412..9437457, 9437777..9437930,9444605..9444689,9445250..9445366) /locus_tag="TCM_013117" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016792t2" /codon_start=1 /product="Homeodomain-like superfamily protein, putative isoform 1" /protein_id="EOY21494.1" /db_xref="Phytozome:POPTR_0012s03900.1" /db_xref="TAIR:AT5G16560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N391" /translation="MSHKGGFSKQSLNRIPDLSLHISPPNSAPSSICTGTNEGDSSFD IWRKDDGLKSHSDSSIKAGSQADTELSLANPASSALEAESPWQRNFAGGVTDDDQIKH RNLLKRGNTNSGQLSNINHGISLLDVSGLKPIKGIPVYNNSMSFPFSSSDSLVDMDPN KLRFYHQSCPSYNCSSSTSAVLHSPDAYRIGSAPRFNGISMETLRPQFHHQYTQYGAA DLCNGMIRSRFMPKLQSKRTMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELM DVKDLTLAHVKSHLQMYRTVKSTDKPAASSDGSGEEDYLPARNTISQIANCSVNQRSS ASPNLSIQQDNGHSPTNLWSNSSSRGVWLSSSRNPDGFRPDAPSSQPGNQIEESSFAK QKILTGSSLELHNPSLDFSLGRPDWQRKERDS" CDS join(9435826..9436621,9436743..9436819,9437412..9437457, 9437777..9437930,9444608..9444689,9445250..9445366) /locus_tag="TCM_013117" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016792t2" /codon_start=1 /product="Homeodomain-like superfamily protein, putative isoform 2" /protein_id="EOY21495.1" /db_xref="Phytozome:POPTR_0012s03900.1" /db_xref="TAIR:AT5G16560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N391" /translation="MSHKGGFSKQSLNRIPDLSLHISPPNSAPSSICTGTNEGDSSFD IWRKDDGLKSHSDSSIKAGSQADTELSLANPASSALEAESPWQRNFAGGVTDDDQIKH RNLLKRGNTNSGQLSNINHGISLLDVSGLKPIKGIPVYNNSMSFPFSSSDSLVDMDPN KLRFYHQSCPSYNCSSSTSAVLHSPDAYRIGSAPRFNGISMETLRPQFHHQYTQYGAA DLCNGMIRSRFMPKLQSKRTMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELM DVKDLTLAHVKSHLQMYRTVKSTDKPAASSDGSGEEDYLPARNTISQIANCSVNQRSS ASPNLSIQQDNGHSPTNLWSNSSRGVWLSSSRNPDGFRPDAPSSQPGNQIEESSFAKQ KILTGSSLELHNPSLDFSLGRPDWQRKERDS" CDS join(9435826..9436621,9436743..9436819,9437412..9437457, 9437777..9437930,9445250..>9445271) /locus_tag="TCM_013117" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG016792t4" /codon_start=1 /product="Homeodomain-like superfamily protein, putative isoform 4" /protein_id="EOY21497.1" /db_xref="Phytozome:POPTR_0012s03900.1" /db_xref="TAIR:AT5G16560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N391" /translation="MSHKGGFSKQSLNRIPDLSLHISPPNSAPSSICTGTNEGDSSFD IWRKDDGLKSHSDSSIKAGSQADTELSLANPASSALEAESPWQRNFAGGVTDDDQIKH RNLLKRGNTNSGQLSNINHGISLLDVSGLKPIKGIPVYNNSMSFPFSSSDSLVDMDPN KLRFYHQSCPSYNCSSSTSAVLHSPDAYRIGSAPRFNGISMETLRPQFHHQYTQYGAA DLCNGMIRSRFMPKLQSKRTMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELM DVKDLTLAHVKSHLQMYRTVKSTDKPAASSDGSGEEDYLPARNTISQIANCSVNQRSS ASPNLSIQQDNGHSPTNLWSNSSRKAVLLNK" mobile_element 9448326..9452492 /note="source:CACAO_M_S_E5046_F335_scaffold_1 2 4140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9449992..9455331) /note="source:scaffold_2_CACTA_0259 1069 6436" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9455446..9458356 /note="source:CACAO_M_E13147_F230_scaffold_3 1 2911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9459743..9460430) /note="source:CACAO_M_E1841_F5_scaffold_1 9629 10304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9461886..9462806 /note="source:INTACT85_F9_scaffold_4-int 1 916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9462807..9465371) /note="source:CACAO_M_E58324_F9_scaffold_9 7669 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9465373..9465898 /note="source:INTACT85_F9_scaffold_4-int 913 1445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9466071..9469260 /note="source:INTACT1327F_F381_scaffold_8-int 6065 9257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9471228..9472729 /note="source:CACAO_M_E1841_F5_scaffold_1 15218 16662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9474068..9475567) /note="source:INTACT591_F264_scaffold_1-int 19751 21282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9477762..9477826 /note="source:INTACT126_F14_scaffold_3-int 287 354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9477779..9477822) /note="source:CACAO_M_E58819_F24_scaffold_9 732 778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9479007..9479782 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17615 18396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9479742..9479780) /note="source:scaffold_8_CACTA_0859 15405 15435" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9479781..9482666 /note="source:CACAO_M_E13798_F15_scaffold_3 1 2887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9482667..9484864 /note="source:CACAO_M_S_E84415_F15_scaffold_6 1 2204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9482897..9491606) /note="source:INTACT213F_F15_scaffold_3-int 1954 10656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9490611..9493532 /note="source:CACAO_M_E9395_F12_scaffold_2 2068 4966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9496557..9496858 /note="source:INTACT189_F49_scaffold_5-int 1994 2295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9496845..9496884 /note="source:INTACT167_F5_scaffold_2-int 2111 2150" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9496885..9507407 /note="source:CACAO_M_E13153_F15_scaffold_3 1 10523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9507408..9509097) /note="source:CACAO_M_E5899_F5_scaffold_2 21809 23498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9509456..9509839) /note="source:CACAO_M_E5899_F5_scaffold_2 21048 21430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9509840..9512671) /note="source:CACAO_M_E3654_F4_scaffold_1 5656 8304" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9512463..9514747 /note="source:INTACT11_F4_scaffold_8-int 2666 4945" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9514748..9525143 /note="source:CACAO_M_E13157_F7_scaffold_3 1 10396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9525144..9525438 /note="source:INTACT453_F4_scaffold_9-int 14990 15284" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9525439..9528196 /note="source:CACAO_M_E13159_F15_scaffold_3 1 2758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9528197..9530342 /note="source:INTACT453_F4_scaffold_9-int 15280 17425" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9530343..9533020) /note="source:INTACT498_F231_scaffold_5-int 1 2666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9533021..9533583 /note="source:CACAO_M_S_E84261_F4_scaffold_6 476 1039" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9533577..9534365) /note="source:CACAO_M_E3654_F4_scaffold_1 6428 7221" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9534827..9534986) /note="source:scaffold_3_CACTA_0382 10461 10626" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9535150..9535993) /note="source:CACAO_M_E5899_F5_scaffold_2 19296 20159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9535983..9537331) /note="source:CACAO_M_E35511_F5_scaffold_5 12345 13662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9539930..9540006 /note="source:INTACT224_F176_scaffold_8-int 2475 2552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9540010..9540753) /note="source:CACAO_M_E35511_F5_scaffold_5 2565 3283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9540754..9543588 /note="source:CACAO_M_E13167_F15_scaffold_3 1 2835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9544804..9550134) /note="source:CACAO_M_E35511_F5_scaffold_5 3434 8742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9550137..9551243 /note="source:CACAO_M_E13172_F96_scaffold_3 1 1107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9551892..9556325 /note="source:CACAO_M_E13172_F96_scaffold_3 1108 5541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9561739..9568590 /note="source:CACAO_M_E44543_F5_scaffold_6 2710 10177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9569739..9569776 /note="source:CACAO_M_S_E85177_F5_scaffold_7 22287 22325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9570331..9570472 /note="source:CACAO_M_E48452_F5_scaffold_6 14878 15018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9572988..9573730) /note="source:scaffold_3_CACTA_0382 11165 11886" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9573725..9574001) /note="source:INTACT224_F176_scaffold_8-int 17763 18024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9573980..9575479 /note="source:CACAO_M_E42395_F3_scaffold_5 19110 20593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9575472..9575698 /note="source:CACAO_M_E42395_F3_scaffold_5 1553 1782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9575742..9576751) /note="source:CACAO_M_E24592_F195_scaffold_4 1619 2627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9576751..9577413 /note="source:INTACT224_F176_scaffold_8-int 11624 12269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9577604..9579251 /note="source:INTACT224_F176_scaffold_8-int 12267 13903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9579248..9579417) /note="source:INTACT224_F176_scaffold_8-int 2 171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9586284..9586547 /note="source:INTACT224_F176_scaffold_8-int 11624 11885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9586549..9586632 /note="source:CACAO_M_E57660_F369_scaffold_9 1 84" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9586615..9587251 /note="source:CACAO_M_E5429_F369_scaffold_2 9871 10507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9587252..9587976 /note="source:CACAO_M_E24592_F195_scaffold_4 1664 2360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9588300..9589206 /note="source:CACAO_M_E24592_F195_scaffold_4 2991 3876" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9589707..9590643 /note="source:INTACT714_F310_scaffold_9-int 11441 12416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9594067..9594404 /note="source:CACAO_M_E24592_F195_scaffold_4 19419 19757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9594405..9597393) /note="source:CACAO_M_S_E34209_F7_scaffold_4 1 2993" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9597401..9600440 /note="source:CACAO_M_E13201_F318_scaffold_3 1 3029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9600441..9600928 /note="source:INTACT41F_F338_scaffold_1-int 8730 9196" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9601667..9601724 /note="source:INTACT41F_F338_scaffold_1-int 9741 9791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9601692..9601951) /note="source:CACAO_M_E24592_F195_scaffold_4 20616 20863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9602476..9602701 /note="source:CACAO_M_E5899_F5_scaffold_2 21171 21393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9603035..9603115 /note="source:CACAO_M_E5899_F5_scaffold_2 21762 21841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9603274..9604102) /note="source:CACAO_M_E56674_F14_scaffold_8 12245 13107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9605104..9605241 /note="source:CACAO_M_E10929_F98_scaffold_2 739 876" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9605119..9607132) /note="source:INTACT1308F_F98_scaffold_7-int 7418 9431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9607133..9608453) /note="source:CACAO_M_E56674_F14_scaffold_8 10909 12250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9608454..9619214 /note="source:INTACT139_F15_scaffold_3-int 1 10761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9619215..9624965 /note="source:CACAO_M_S_E66670_F14_scaffold_5 2217 7956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9624933..9627173 /note="source:CACAO_M_E65323_F12_scaffold_9 7725 9917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9627286..9627329) /note="source:scaffold_3_CACTA_0382 1868 1911" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9627430..9627963) /note="source:INTACT170_F12_scaffold_5-int 1180 1714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9627964..9631226 /note="source:CACAO_M_E2213_F15_scaffold_1 1 2777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9631227..9631303) /note="source:CACAO_M_E12710_F15_scaffold_3 7777 8103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9631303..9633916 /note="source:CACAO_M_E14347_F12_scaffold_3 6893 9547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9633911..9641632) /note="source:INTACT208_F15_scaffold_1-int 1 7678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9641633..9643319 /note="source:INTACT289_F14_scaffold_4-int 8443 10147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9643325..9643853) /note="source:CACAO_M_E3248_F5_scaffold_1 1818 2324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9643854..9657667 /note="source:CACAO_M_E13220_F12_scaffold_3 1 13814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9657761..9658061) /note="source:CACAO_M_S_E5046_F335_scaffold_1 17836 18135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9658428..9658593) /note="source:CACAO_M_E12463_F12_scaffold_3 5358 5519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9658962..9661740 /note="source:CACAO_M_E13230_F15_scaffold_3 1 2779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9661959..9662064) /note="source:scaffold_3_CACTA_0382 10032 10137" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9662077..9662648) /note="source:CACAO_M_E3248_F5_scaffold_1 1653 2243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9662649..9663015) /note="source:CACAO_M_S_E5046_F335_scaffold_1 17491 17856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9663366..9663792) /note="source:CACAO_M_S_E5046_F335_scaffold_1 15308 15734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9664184..9664361 /note="source:CACAO_M_E11662_F12_scaffold_2 14378 14552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9665917..9667129) /note="source:CACAO_M_E3248_F5_scaffold_1 3115 4310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9667205..9667851) /note="source:CACAO_M_E65323_F12_scaffold_9 8594 9238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9667924..9668473) /note="source:CACAO_M_E3248_F5_scaffold_1 1806 2382" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9668525..9668592) /note="source:INTACT170_F12_scaffold_5-int 1176 1245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9670211..9670269) /note="source:CACAO_M_E12463_F12_scaffold_3 4575 4633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9673562..9676418) /note="source:INTACT676_F297_scaffold_3-int 7399 10220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9676407..9679341) /note="source:CACAO_M_S_E33235_F289_scaffold_4 3 4619" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9679329..9685869) /note="source:INTACT676_F297_scaffold_3-int 864 7407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9679342..9686678 /note="source:INTACT498_F231_scaffold_5-int 420 10436" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9687850..9696624) /locus_tag="TCM_013143" /note="dbxref CacaoGD:Thecc1EG013143" mRNA complement(join(9687850..9687925,9694012..9694854, 9696616..9696624)) /locus_tag="TCM_013143" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024119t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.11 coverage" mobile_element complement(9692356..9693190) /note="source:INTACT410F_F357_scaffold_4-int 2595 3432" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(9694027..9694296) /locus_tag="TCM_013143" /note="paralog of Thecc1EG024119t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21499.1" /translation="MYAWLGHQMITQLRPLDALMSANIVEIAMACEIRWSEAPGFYYV VAGPQVLVDLLLETKNLFGFSNSYILHGENEIIRFLAASLCFPVM" mobile_element 9694589..9694667 /note="source:scaffold_4_CACTA_0490 14048 14130" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9696641..9707008 /note="source:INTACT498_F231_scaffold_5-int 1 10436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9709261..9709317) /note="source:INTACT410F_F357_scaffold_4-int 489 545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9710125..9711285 /note="source:CACAO_M_E42691_F9_scaffold_5 8974 10124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9711327..9711525) /note="source:CACAO_M_E35511_F5_scaffold_5 13456 13654" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9711524..9712884) /note="source:CACAO_M_E24592_F195_scaffold_4 2502 3874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9714013..9715504) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5873 7401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9715826..9718426) /note="source:CACAO_M_S_E6055_F310_scaffold_2 10314 12074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9721097..9721267) /note="source:INTACT597_F267_scaffold_2-int 10959 11149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9721298..9721379) /note="source:INTACT597_F267_scaffold_2-int 10443 10530" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9722761..9723287) /note="source:scaffold_2_CACTA_0262 8522 9054" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9723219..9723330 /note="source:INTACT410F_F357_scaffold_4-int 9952 10073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9723288..9723889) /note="source:CACAO_M_S_E7818_F60_scaffold_2 7001 7597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9723876..9723971 /note="source:INTACT496_F230_scaffold_5-int 3976 4074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9723889..9724120) /note="source:CACAO_M_E24592_F195_scaffold_4 1105 1334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9724108..9724164) /note="source:CACAO_M_E24592_F195_scaffold_4 20642 20695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9725760..9726637 /note="source:INTACT224_F176_scaffold_8-int 2831 3656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9726627..9726637) /note="source:scaffold_2_CACTA_0262 14559 14571" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9726638..9729351 /note="source:CACAO_M_S_E14383_F144_scaffold_2 1 2722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9729051..9730979 /note="source:scaffold_3_CACTA_0382 1 1929" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9731080..9736583 /note="source:scaffold_3_CACTA_0382 1930 7433" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9736684..9741514 /note="source:scaffold_3_CACTA_0382 7434 12264" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9741719..9742291 /note="source:CACAO_M_E3248_F5_scaffold_1 3302 3827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9746070..9755319 /note="source:CACAO_M_E3626_F245_scaffold_1 1733 10968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9755320..9756282 /note="source:CACAO_M_S_E119160_F14_scaffold_9 11176 12166" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9755954..9756324) /note="source:INTACT595F_F13_scaffold_4-int 4670 5041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9756325..9757051 /note="source:CACAO_M_E33213_F12_scaffold_4 8120 8823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9757044..9757103 /note="source:INTACT88_F12_scaffold_4-int 12315 12373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9757104..9759865 /note="source:CACAO_M_E13268_F15_scaffold_3 1 2737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9759866..9759905 /note="source:INTACT242_F12_scaffold_1-int 2980 3019" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9759894..9760709 /note="source:CACAO_M_E58819_F24_scaffold_9 14754 15496" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9760697..9761398) /note="source:INTACT265_F12_scaffold_7-int 12363 13052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9761851..9762315) /note="source:CACAO_M_S_E99574_F14_scaffold_9 8648 9111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9762551..9763519) /note="source:CACAO_M_S_E32752_F12_scaffold_4 2468 3439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9763491..9764512) /note="source:CACAO_M_E58324_F9_scaffold_9 7669 8735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9764514..9764962) /note="source:INTACT595F_F13_scaffold_4-int 3158 3626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9764956..9765619) /note="source:CACAO_M_E32900_F13_scaffold_4 2446 3109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9766294..9767226) /note="source:scaffold_3_CACTA_0382 10983 11910" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9767218..9768237 /note="source:CACAO_M_S_E119160_F14_scaffold_9 12240 13220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9769277..9770107) /note="source:INTACT329_F199_scaffold_2-int 1057 1894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9770333..9771068) /note="source:INTACT329_F199_scaffold_2-int 6553 7285" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9771069..9771578) /note="source:CACAO_M_E42514_F40_scaffold_5 15271 15780" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9773167..9773776 /note="source:CACAO_M_S_E99574_F14_scaffold_9 21258 21888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9773775..9775063 /note="source:INTACT170_F12_scaffold_5-int 5533 6822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9775038..9775672) /note="source:INTACT329_F199_scaffold_2-int 5738 6428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9775673..9775892) /note="source:INTACT563_F255_scaffold_10-int 16535 16773" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9775893..9778527) /note="source:INTACT329_F199_scaffold_2-int 2865 5737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9778516..9781365 /note="source:CACAO_M_E870_F22_scaffold_1 1369 4202" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9781359..9782143) /note="source:INTACT329_F199_scaffold_2-int 2088 2873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9782143..9788834 /note="source:CACAO_M_S_E99574_F14_scaffold_9 3821 16902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9788835..9793312 /note="source:INTACT1295F_F378_scaffold_7-int 1 4522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9793306..9799886) /note="source:INTACT560_F15_scaffold_3-int 1 6597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9799887..9803813) /note="source:CACAO_M_E65050_F7_scaffold_9 7102 11063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9803814..9806637 /note="source:CACAO_M_S_E99574_F14_scaffold_9 17770 20546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9806616..9806739 /note="source:scaffold_9_CACTA_0931 15706 15826" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9806634..9807057 /note="source:CACAO_M_E86354_F12_scaffold_15 9724 10147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9807003..9807067) /note="source:CACAO_M_S_E99574_F14_scaffold_9 22255 22318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9808172..9808282 /note="source:INTACT419F_F81_scaffold_4-int 8387 8500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9808539..9809650) /note="source:CACAO_M_E65323_F12_scaffold_9 7737 8835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9810904..9813708 /note="source:CACAO_M_S_E18263_F254_scaffold_3 1 2805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9816939..9817053) /note="source:INTACT265_F12_scaffold_7-int 7164 7278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9816965..9817089 /note="source:INTACT236_F12_scaffold_10-int 8852 8983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9817377..9821636 /note="source:INTACT160_F4_scaffold_7-int 1 4324" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9820692..9822015) /note="source:CACAO_M_E43672_F60_scaffold_5 16133 17521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9822016..9830349 /note="source:CACAO_M_E52180_F15_scaffold_7 1 8382" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9830334..9830427 /note="source:INTACT94_F142_scaffold_5-int 6977 7069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9830350..9832171) /note="source:CACAO_M_E84316_F15_scaffold_10 1 1846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9832062..9832188 /note="source:CACAO_M_S_E101707_F15_scaffold_9 11156 11281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9832169..9833880 /note="source:CACAO_M_E84368_F4_scaffold_10 16283 17995" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9833858..9833875) /note="source:CACAO_M_E69460_F12_scaffold_9 10824 10840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9833876..9838271 /note="source:CACAO_M_S_E65805_F7_scaffold_5 1 4362" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9838274..9838463) /note="source:INTACT487_F4_scaffold_2-int 6893 7083" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9838534..9838643) /note="source:CACAO_M_E11098_F15_scaffold_2 9117 9232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9839809..9840379) /note="source:scaffold_9_CACTA_0931 1 572" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9842960..9845628) /note="source:INTACT93F_F345_scaffold_2-int 1 2639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9845839..9846240) /note="source:scaffold_2_CACTA_0259 400 801" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9846241..9848166 /note="source:CACAO_M_S_E51867_F7_scaffold_4 1 1985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9848391..9858620 /note="source:INTACT494_F82_scaffold_3-int 1 10230" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9858621..9859329 /note="source:CACAO_M_S_E51867_F7_scaffold_4 2251 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9859316..9863054 /note="source:CACAO_M_S_E5046_F335_scaffold_1 381 4140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9859884..9866802) /note="source:INTACT518_F239_scaffold_2-int 1648 8542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9873757..9873800) /note="source:CACAO_M_S_E122136_F76_scaffold_10 13656 13699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9880479..9880988) /note="source:scaffold_3_CACTA_0382 11383 11877" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9880989..9882256) /note="source:CACAO_M_E13466_F15_scaffold_3 1576 2834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9882238..9890893 /note="source:CACAO_M_E33228_F15_scaffold_4 2142 10792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9890913..9891105) /note="source:scaffold_3_CACTA_0382 11165 11355" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9893551..9893691) /note="source:CACAO_M_E5899_F5_scaffold_2 10363 10500" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9894766..9902080) /locus_tag="TCM_013162" /note="dbxref CacaoGD:Thecc1EG013162" mRNA complement(join(9894766..9895207,9901983..9902080)) /locus_tag="TCM_013162" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(9894943..9895173) /locus_tag="TCM_013162" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21500.1" /translation="MESKKNDYKKMGKEKMKEVAVKSYCPWKVSVVQNFSLSCGKRAS PITRKDYVNDQQGENGENEEDRQEVEDDSDYD" mobile_element 9896779..9896881 /note="source:CACAO_M_S_E99035_F335_scaffold_9 7196 7299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9901678..9903095 /note="source:scaffold_8_CACTA_0859 16516 17937" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9906981..9907145) /note="source:INTACT224_F176_scaffold_8-int 3657 3821" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9907691..9918026 /note="source:CACAO_M_E36454_F98_scaffold_5 1306 15886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9921635..9922086 /note="source:CACAO_M_E52364_F333_scaffold_7 1 450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9922187..9924253 /note="source:CACAO_M_E58195_F333_scaffold_9 466 2583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9924351..9925775) /note="source:INTACT1820F_F94_scaffold_12-int 300 1728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9924867..9927358 /note="source:INTACT111_F36_scaffold_10-int 1984 4465" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9927457..9928607) /note="source:CACAO_M_S_E7318_F7_scaffold_2 1830 2977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9928591..9930318 /note="source:CACAO_M_E14672_F7_scaffold_3 1267 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9930319..9931770) /note="source:CACAO_M_E3884_F22_scaffold_1 16320 17757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9931771..9933292) /note="source:CACAO_M_S_E54060_F7_scaffold_5 1514 2999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9935002..9935342) /note="source:CACAO_M_E5800_F12_scaffold_2 4224 4583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9935343..9936247) /note="source:CACAO_M_E3884_F22_scaffold_1 15418 16324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9936908..9937790) /note="source:CACAO_M_E3884_F22_scaffold_1 14532 15414" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9937791..9940324) /note="source:CACAO_M_S_E85177_F5_scaffold_7 17614 20246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9940324..9941531) /note="source:INTACT1820F_F94_scaffold_12-int 1847 3050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9941544..9942160) /note="source:CACAO_M_E3884_F22_scaffold_1 12577 13185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9942138..9943305 /note="source:CACAO_M_E5800_F12_scaffold_2 19980 21151" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9944761..9947756 /note="source:CACAO_M_E49568_F36_scaffold_7 2621 5614" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9948960..9949104) /note="source:CACAO_M_E14347_F12_scaffold_3 8770 8834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9950558..9951001) /note="source:CACAO_M_E24592_F195_scaffold_4 19420 19859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9952473..9952801 /note="source:scaffold_6_CACTA_0702 4288 4612" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9952977..9953457 /note="source:scaffold_6_CACTA_0702 9787 10263" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9955989..9956076 /note="source:INTACT695_F301_scaffold_5-int 4339 4427" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9956000..9956096) /note="source:INTACT406_F208_scaffold_3-int 18 109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9956043..9957588 /note="source:scaffold_2_CACTA_0261 1815 3282" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9956951..9958312 /note="source:CACAO_M_E58601_F7_scaffold_9 4313 5673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9958494..9961660) /note="source:CACAO_M_S_E5695_F256_scaffold_2 6309 9513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9959661..9968533 /note="source:INTACT130_F12_scaffold_9-int 1261 10189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9970315..9970411) /note="source:CACAO_M_E58148_F12_scaffold_9 10853 10949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9970401..9970507) /note="source:INTACT41F_F338_scaffold_1-int 567 646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9970494..9971916) /note="source:CACAO_M_S_E64608_F12_scaffold_5 4127 5570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9972081..9973070 /note="source:CACAO_M_S_E18314_F233_scaffold_3 1829 2800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9973071..9979698 /note="source:INTACT595_F266_scaffold_7-int 2008 8656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9978775..9980707) /note="source:CACAO_M_E3248_F5_scaffold_1 16964 18837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9981282..9981775) /note="source:INTACT1580F_F15_scaffold_9-int 3390 3849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9981773..9982509 /note="source:CACAO_M_E11002_F369_scaffold_2 1 738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9982447..9982520) /note="source:INTACT104_F144_scaffold_1-int 9693 9765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9985452..9987403 /note="source:CACAO_M_E11002_F369_scaffold_2 734 2706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9987405..9987823) /note="source:INTACT193_F12_scaffold_1-int 7165 7563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9988430..9988469) /note="source:CACAO_M_E4063_F12_scaffold_2 4967 5006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9988969..9989029 /note="source:INTACT199_F5_scaffold_6-int 7770 7831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9990174..9990274 /note="source:INTACT199_F5_scaffold_6-int 8449 8550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9990196..9991352) /note="source:CACAO_M_S_E31635_F14_scaffold_3 1 1168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9991354..9991523 /note="source:scaffold_1_CACTA_0011 3593 3761" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9991712..9994532 /note="source:CACAO_M_S_E18314_F233_scaffold_3 1 2800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9994445..9994543) /note="source:CACAO_M_E42395_F3_scaffold_5 4508 4610" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9995115..9996161) /locus_tag="TCM_013170" /note="dbxref CacaoGD:Thecc1EG013170" mRNA complement(9995115..9996161) /locus_tag="TCM_013170" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003160t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(9995361..9996110) /locus_tag="TCM_013170" /note="paralog of Thecc1EG003160t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21501.1" /translation="MWEVITGKREKFPSRSYTSEIKNAQLRILHYFIATILHGRSSSF SYVSAQDLWLMEAVFNEITQNVGRYMVKRIKTTTLRDKANLSYGNIITTLVKKKRIWS GRFQYDLMKNKDQGIFLGSVLKMGHKIEKNECIKITKGTPLAPSTGSHSTPFTRVSQL LLQSDMMLNLLMRIDGKLTDQAEKMEKIQEKLQQLEALLNPAKETNVSETPISVVSQS SERTTTKQFESAISSHDKKTKKETPKNPDVI" mobile_element 9999841..10001471 /note="source:CACAO_M_E3248_F5_scaffold_1 1903 3502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10001477..10002007 /note="source:CACAO_M_E13172_F96_scaffold_3 7217 7553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10001814..10004090) /note="source:INTACT690_F13_scaffold_1-int 5675 7928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10004077..10004172 /note="source:INTACT695_F301_scaffold_5-int 8164 8254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10004089..10004566) /note="source:CACAO_M_E36038_F90_scaffold_5 2757 3228" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10004545..10004955 /note="source:CACAO_M_E23877_F12_scaffold_4 1858 2269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10005056..10005899 /note="source:INTACT99F_F96_scaffold_2-int 1882 2725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10005901..10006903 /note="source:CACAO_M_E24592_F195_scaffold_4 20069 20971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10006140..10007930) /note="source:CACAO_M_E13604_F90_scaffold_3 8601 10427" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10007932..10008451) /note="source:CACAO_M_E5899_F5_scaffold_2 20411 20700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10008452..10011419 /note="source:CACAO_M_E23109_F230_scaffold_4 1 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10011420..10012157) /note="source:INTACT597_F267_scaffold_2-int 5756 6503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10012168..10012397) /note="source:scaffold_9_CACTA_0931 1 222" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10013038..10013134) /note="source:INTACT95_F143_scaffold_9-int 8457 8550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10014162..10015600 /note="source:INTACT26_F13_scaffold_9-int 2415 3852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10016348..10019076 /note="source:CACAO_M_E13338_F15_scaffold_3 1 2729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10021389..10023355 /note="source:CACAO_M_E13339_F47_scaffold_3 1 1967" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10024806..10027797 /note="source:CACAO_M_S_E18323_F7_scaffold_3 1 2992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10028739..10029352 /note="source:scaffold_2_CACTA_0260 3898 4514" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10031139..10031264) /note="source:INTACT19F_F94_scaffold_1-int 1495 1696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10031193..10031267 /note="source:INTACT405F_F91_scaffold_4-int 121 203" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10031404..10031439) /note="source:INTACT135F_F90_scaffold_2-int 748 783" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10031878..10037452) /note="source:INTACT359_F73_scaffold_2-int 1725 12734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10037553..10038750) /note="source:CACAO_M_E12964_F73_scaffold_3 518 1715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10038851..10039340) /note="source:CACAO_M_E70095_F73_scaffold_10 1 490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10039994..10040069) /note="source:INTACT19F_F94_scaffold_1-int 65 139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10041437..10052239 /note="source:INTACT93F_F345_scaffold_2-int 1 16827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10052508..10052608 /note="source:INTACT261_F189_scaffold_2-int 180 283" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10052929..10053544) /note="source:scaffold_2_CACTA_0260 3898 4514" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10054151..10054262 /note="source:CACAO_M_S_E7818_F60_scaffold_2 20603 20714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10054544..10054615 /note="source:CACAO_M_E42809_F5_scaffold_5 313 385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10054552..10054618) /note="source:INTACT537_F22_scaffold_2-int 735 803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10055477..10055703) /note="source:CACAO_M_E48538_F49_scaffold_6 12214 12407" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10056030..10058437 /locus_tag="TCM_013175" /note="dbxref CacaoGD:Thecc1EG013175" mRNA join(10056030..10056494,10056651..10057027, 10058002..10058437) /locus_tag="TCM_013175" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.34 coverage" CDS join(10056941..10057027,10058002..10058154) /locus_tag="TCM_013175" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21502.1" /translation="MRCCSIVKGVILLNSSKILLYMIALKDRKDLALVMTTKSSPDIF ETLQMSGNVALHCTLGNAWSTVWSFRGVYQGLCLA" gene complement(10058839..10064696) /locus_tag="TCM_013176" /note="dbxref CacaoGD:Thecc1EG013176" mRNA complement(join(10058839..10059433,10060152..10060241, 10060318..10060533,10061403..10061621,10061804..10061949, 10064321..10064528)) /locus_tag="TCM_013176" /product="Annexin 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g30190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011227t1" /inference="similar to AA sequence:Phytozome:Glyma09g30190.4" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08461t00001; inference alignment:Newbler:10:TSA:cgbaL_g08461t00001" mRNA complement(join(10059076..10059433,10059580..10059589, 10060139..10060241,10060318..10060533,10061403..10061621, 10061792..10061949,10064321..10064648)) /locus_tag="TCM_013176" /product="Annexin 5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g30190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011227t1" /inference="similar to AA sequence:Phytozome:Glyma09g30190.4" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc743t13; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc743t13; inference alignment:Newbler:10:TSA:cgbaL_g08461t00001" CDS complement(join(10059230..10059433,10060152..10060241, 10060318..10060533,10061403..10061621,10061804..10061949, 10064321..10064396)) /locus_tag="TCM_013176" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011227t1" /codon_start=1 /product="Annexin 5 isoform 1" /protein_id="EOY21503.1" /db_xref="Phytozome:Glyma09g30190.4" /db_xref="TAIR:AT1G68090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9X3" /translation="MSTLSVPPVPTSPRDDAIQLYRAFKGLGCDTAAVVNILAHRDAM QRSLIQQEYRTMYSDDLSKRLASELSGKLETAVLLWMHDPAGRDAIVIRQALLADVTN LNGATEVICSRTPSQIQLIKQNYHSKFGVFLEQDIEGHTSGDHKKLLLAYVSTFRYEG LEVDREMALKDAKDLYKAGEKKLGTDEKTFIRIFSERSRAQLGAISPAYHDMYGGSLK KAVKSETSGKFEHGLLTILKCSENPAKYFAKVLHKAMKGLGTDDTTLIRVIVTRTEID MQYIKAEYLRKYKKTLNDAVHSETSGHYRTFLLSLLGPNH" CDS complement(join(10059415..10059433,10059580..10059589, 10060139..10060241,10060318..10060533,10061403..10061621, 10061792..10061949,10064321..10064396)) /locus_tag="TCM_013176" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011227t1" /codon_start=1 /product="Annexin 5 isoform 2" /protein_id="EOY21504.1" /db_xref="Phytozome:Glyma09g30190.4" /db_xref="TAIR:AT1G68090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HJK4" /translation="MSTLSVPPVPTSPRDDAIQLYRAFKGLGCDTAAVVNILAHRDAM QRSLIQQEYRTMYSDDLSKRLASELSGKLEVPIFTAVLLWMHDPAGRDAIVIRQALLA DVTNLNGATEVICSRTPSQIQLIKQNYHSKFGVFLEQDIEGHTSGDHKKLLLAYVSTF RYEGLEVDREMALKDAKDLYKAGEKKLGTDEKTFIRIFSERSRAQLGAISPAYHDMYG GSLKKAVKSETSGKFEHGLLTILKCSENPAKYFAKVYGFYFCLYCIRQ" mRNA complement(join(10060165..10060241,10060340..10060533, 10061403..10061621,10061792..10061949,10064321..10064648)) /locus_tag="TCM_013176" /product="Annexin 5 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g30190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011227t1" /inference="similar to AA sequence:Phytozome:Glyma09g30190.4" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc743t8; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc743t13; inference alignment:Newbler:10:TSA:cgbaL_g08461t00001" CDS complement(join(10060235..10060241,10060340..10060533, 10061403..10061621,10061792..10061949,10064321..10064396)) /locus_tag="TCM_013176" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG011227t1" /codon_start=1 /product="Annexin 5 isoform 3" /protein_id="EOY21505.1" /db_xref="Phytozome:Glyma09g30190.4" /db_xref="TAIR:AT1G68090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HJK4" /translation="MSTLSVPPVPTSPRDDAIQLYRAFKGLGCDTAAVVNILAHRDAM QRSLIQQEYRTMYSDDLSKRLASELSGKLEVPIFTAVLLWMHDPAGRDAIVIRQALLA DVTNLNGATEVICSRTPSQIQLIKQNYHSKFGVFLEQDIEGHTSGDHKKLLLAYVSTF RYEGLEVDREMALKDAKDLYKAGEKKLGTDEKTFIRIFSERSRAQLGAISPAYHDMQ" mRNA complement(join(<10060320..10060533,10061403..10061621, 10061804..10061943,10064321..10064696)) /locus_tag="TCM_013176" /product="Annexin 5 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g30190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011227t1" /inference="similar to AA sequence:Phytozome:Glyma09g30190.4" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2658t7; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc743t13; inference alignment:Newbler:10:TSA:cgbaL_g08461t00001" CDS complement(join(<10060321..10060533,10061403..10061621, 10061804..10061943,10064321..10064396)) /locus_tag="TCM_013176" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG011227t1" /codon_start=1 /product="Annexin 5 isoform 4" /protein_id="EOY21506.1" /db_xref="Phytozome:Glyma09g30190.4" /db_xref="TAIR:AT1G68090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HJK4" /translation="MSTLSVPPVPTSPRDDAIQLYRAFKGCDTAAVVNILAHRDAMQR SLIQQEYRTMYSDDLSKRLASELSGKLETAVLLWMHDPAGRDAIVIRQALLADVTNLN GATEVICSRTPSQIQLIKQNYHSKFGVFLEQDIEGHTSGDHKKLLLAYVSTFRYEGLE VDREMALKDAKDLYKAGEKKLGTDEKTFIRIFSERSRAQLGAISPAYHDMYGGSLK" mobile_element complement(10070621..10070692) /note="source:INTACT1218F_F372_scaffold_6-int 242 313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10070656..10070713 /note="source:CACAO_M_E53215_F369_scaffold_8 9172 9229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10073598..10073644 /note="source:CACAO_M_E36274_F7_scaffold_5 2925 2971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10073827..10074421 /note="source:CACAO_M_S_E7818_F60_scaffold_2 19271 19810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10075379..10078022 /note="source:INTACT597_F267_scaffold_2-int 8071 9769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10078013..10079444 /note="source:INTACT224_F176_scaffold_8-int 13899 15342" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10080931..10083941 /note="source:CACAO_M_S_E18328_F7_scaffold_3 1 3011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10083942..10084379 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18324 18766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10084326..10084385) /note="source:CACAO_M_E53215_F369_scaffold_8 1251 1308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10084621..10084704 /note="source:CACAO_M_E3884_F22_scaffold_1 23281 23363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10084701..10084899) /note="source:scaffold_2_CACTA_0260 4032 4232" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10084895..10086074 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3575 4759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10088120..10088816 /note="source:CACAO_M_E58601_F7_scaffold_9 8820 9523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10088476..10089021) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6587 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10089154..10089546) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6226 6604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10089685..10089929) /note="source:CACAO_M_S_E7818_F60_scaffold_2 19454 19648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10090454..10091588) /note="source:CACAO_M_S_E7818_F60_scaffold_2 18200 19311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10093185..10096923 /note="source:INTACT41F_F338_scaffold_1-int 4639 8344" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10096486..10097033) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6587 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10097166..10097561) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6226 6604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10097725..10098072) /note="source:CACAO_M_S_E7818_F60_scaffold_2 19454 19644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10098411..10098797) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5515 5905" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10098794..10101362 /note="source:CACAO_M_E86361_F7_scaffold_15 6206 8755" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10105514..10111926 /locus_tag="TCM_013181" /note="dbxref CacaoGD:Thecc1EG013181" mRNA join(10105514..10106119,10108074..10108112, 10108217..10108287,10110205..10110269,10110360..10110449, 10110664..10110756,10110967..10111926) /locus_tag="TCM_013181" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000397001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037212t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400056199" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2650t3" mRNA join(10105524..10106119,10108074..10108112, 10108217..10108287,10110205..10110269,10110360..10110449, 10110664..10110768,10110967..10111878) /locus_tag="TCM_013181" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000397001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037212t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400056199" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3556t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2650t3" mRNA join(10105525..10106119,10108074..10108112, 10108217..10108287,10110205..10110230,10110967..10111878) /locus_tag="TCM_013181" /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000397001" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400056199" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4097t3_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2650t3" CDS join(10105530..10106119,10108074..10108112, 10108217..10108287,10110205..10110269,10110360..10110449, 10110664..10110768,10110967..10111368) /locus_tag="TCM_013181" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037212t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY21508.1" /db_xref="Phytozome:PGSC0003DMP400056199" /db_xref="TAIR:AT1G73480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AM5" /translation="MICSTTGTIVIPRETKFQKFPFKHSHFQVKTYVCSKTNYKPKSR FKDFNPLISTTTKTMAVEPFTSGASGRINALFSLRALRSLMMLVNAIVLLLLLPFRGQ KRAVAINSGEKVGKDEKQESGRKGSAVVRVPAAMVPWRSGAVTVDQEAAARRALAIRR VVQDDDDDTVREFSLFVNARGETLFTQSWTPISVIVRGLVVLLHGLNEHSGRYNDFAK QLNANGLKVYGMDWIGHGGSDGLHAYVHCLDDAVTDMKMFLEKVLAENPGLPCFCFGH STGAAIILKAVLDPKVEAQVAGIVLTSPAVGVQPSHPIFVVRISVLAPVISFLLPRYQ VSIANKKGMPVSRDAEALLAKYSDPLVYTGSIRVRTGYEILRITSYLQQNMNRLSVPF LVLHGTDDTVTDPQASQKLYEEASSTDKTIKLFEGLLHDLLFEPERETIMNDIIQWLN CRV" CDS join(10105530..10106119,10108074..10108112, 10108217..10108287,10110205..10110269,10110360..10110449, 10110664..10110756,10110967..10111368) /locus_tag="TCM_013181" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037212t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY21507.1" /db_xref="Phytozome:PGSC0003DMP400056199" /db_xref="TAIR:AT1G73480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AM5" /translation="MICSTTGTIVIPRETKFQKFPFKHSHFQVKTYVCSKTNYKPKSR FKDFNPLISTTTKTMAVEPFTSGASGRINALFSLRALRSLMMLVNAIVLLLLLPFRGQ KRAVAINSGEKVGKDEKQESGRKGSAVVRVPAAMVPWRSGAVTVDQEAAARRALAIRR VVQDDDDDTVREFSLFVNARGETLFTQSWTPISVIVRGLVVLLHGLNEHSGRYNDFAK QLNANGLKVYGMDWIGHGGSDGLHAYVHCLDDAVTDMKMFLEKVLAENPGLPCFCFGH STGAAIILKAVLDPKVEAQVAGIVLTSPAVGVQPSHPIFVVLAPVISFLLPRYQVSIA NKKGMPVSRDAEALLAKYSDPLVYTGSIRVRTGYEILRITSYLQQNMNRLSVPFLVLH GTDDTVTDPQASQKLYEEASSTDKTIKLFEGLLHDLLFEPERETIMNDIIQWLNCRV" CDS join(10105530..10106119,10108074..10108112, 10108217..10108287,10110205..10110230,10110967..10111368) /locus_tag="TCM_013181" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /protein_id="EOY21509.1" /db_xref="Phytozome:PGSC0003DMP400056199" /db_xref="TAIR:AT1G73480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LLN8" /translation="MICSTTGTIVIPRETKFQKFPFKHSHFQVKTYVCSKTNYKPKSR FKDFNPLISTTTKTMAVEPFTSGASGRINALFSLRALRSLMMLVNAIVLLLLLPFRGQ KRAVAINSGEKVGKDEKQESGRKGSAVVRVPAAMVPWRSGAVTVDQEAAARRALAIRR VVQDDDDDTVREFSLFVNARGETLFTQSWTPISVIVRGLVVLLHGLNEHSGRYNDFAK QLNANGLKVYGMDWIGHGGSDGLHVLAPVISFLLPRYQVSIANKKGMPVSRDAEALLA KYSDPLVYTGSIRVRTGYEILRITSYLQQNMNRLSVPFLVLHGTDDTVTDPQASQKLY EEASSTDKTIKLFEGLLHDLLFEPERETIMNDIIQWLNCRV" mobile_element complement(10113156..10113911) /note="source:scaffold_1_CACTA_0009 13065 13836" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10113835..10122316) /note="source:CACAO_on_S_E176_scaffold_5 1 8295" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(10122069..10122359) /note="source:CACAO_M_E33977_F20_scaffold_4 5760 6000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10123180..10125852 /note="source:CACAO_M_E13344_F369_scaffold_3 1 2658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10125853..10126535 /note="source:CACAO_M_E33977_F20_scaffold_4 15857 16540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10130454..10133445 /note="source:CACAO_M_E13345_F277_scaffold_3 1 2992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10135066..10135814) /note="source:INTACT126_F14_scaffold_3-int 15390 16139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10135811..10139253) /note="source:CACAO_M_S_E2790_F7_scaffold_1 14010 17431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10139246..10144026) /note="source:CACAO_M_E13157_F7_scaffold_3 1596 8550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10144002..10144104) /note="source:CACAO_M_E36038_F90_scaffold_5 13248 13352" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10144013..10153647) /note="source:INTACT1793F_F14_scaffold_10-int 2934 15328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10153639..10156264) /note="source:INTACT1793F_F14_scaffold_10-int 1 2652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10156265..10157752) /note="source:CACAO_M_E52564_F14_scaffold_7 5458 6947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10157755..10162219 /note="source:CACAO_LINE_E_93_scaffold_3 1 4465" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(10162216..10165205) /note="source:CACAO_M_E52564_F14_scaffold_7 2473 5460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10165198..10165482) /note="source:INTACT126_F14_scaffold_3-int 1 283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10165483..10165519) /note="source:CACAO_M_E42514_F40_scaffold_5 2306 2612" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10168653..10168695 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4123 4165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10170225..10170406 /note="source:CACAO_M_S_E4413_F3_scaffold_1 1 181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10170946..10172220) /note="source:INTACT163_F158_scaffold_5-int 9666 10934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10180353..10181033 /note="source:CACAO_M_E3859_F82_scaffold_1 7919 8599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10181134..10181507 /note="source:CACAO_M_E50361_F82_scaffold_7 1734 2107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10181608..10182064 /note="source:CACAO_M_E51854_F82_scaffold_7 9066 9524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10182165..10182833) /note="source:CACAO_M_E49857_F85_scaffold_7 20685 21335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10184512..10185164 /note="source:INTACT453_F4_scaffold_9-int 3157 3812" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10185155..10185237 /note="source:INTACT453_F4_scaffold_9-int 14334 14416" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10185238..10186389) /note="source:INTACT51F_F15_scaffold_1-int 10119 11259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10186496..10188371) /note="source:INTACT584_F15_scaffold_3-int 58 1941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10188472..10193286 /note="source:CACAO_M_E86338_F15_scaffold_15 3065 7876" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10196446..10196505) /note="source:CACAO_M_S_E15173_F4_scaffold_2 10040 10098" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10196509..10196902) /note="source:CACAO_M_E56665_F15_scaffold_8 2583 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10197324..10198695 /note="source:CACAO_M_E43590_F7_scaffold_5 7653 9014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10198796..10199198) /note="source:CACAO_M_E22186_F143_scaffold_3 4987 5387" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10199047..10199217 /note="source:CACAO_LINE_E_211_scaffold_8 4909 5077" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(10199195..10199912) /note="source:CACAO_M_S_E15173_F4_scaffold_2 9322 10033" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10199986..10203094 /note="source:CACAO_M_S_E64023_F13_scaffold_5 16487 19647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10204202..10204460) /note="source:CACAO_M_S_E15173_F4_scaffold_2 5605 5861" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10204463..10204731) /note="source:CACAO_M_S_E15173_F4_scaffold_2 5017 5284" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10204715..10206512) /note="source:CACAO_M_S_E15173_F4_scaffold_2 211 2027" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10206618..10207059 /note="source:INTACT39F_F22_scaffold_1-int 3821 4243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10207862..10218942 /note="source:CACAO_M_E13363_F273_scaffold_3 1 11081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10218998..10219300 /note="source:INTACT39F_F22_scaffold_1-int 5557 5869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10220678..10220892) /note="source:INTACT167_F5_scaffold_2-int 3834 4046" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10221202..10222351) /note="source:CACAO_M_E22186_F143_scaffold_3 1805 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10222351..10224866) /note="source:CACAO_M_E13363_F273_scaffold_3 427 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10223516..10225124 /note="source:CACAO_M_S_E64023_F13_scaffold_5 18031 19647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10225125..10225669) /note="source:CACAO_M_E22186_F143_scaffold_3 1273 1809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10225625..10225695) /note="source:scaffold_3_CACTA_0382 1861 1932" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10225654..10225710 /note="source:scaffold_3_CACTA_0382 1861 1918" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10225669..10225725) /note="source:scaffold_3_CACTA_0382 1861 1918" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10225686..10225752 /note="source:scaffold_3_CACTA_0382 1861 1929" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10226346..10227611 /note="source:INTACT95_F143_scaffold_9-int 1699 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10227817..10229870) /note="source:CACAO_M_S_E6875_F7_scaffold_2 4595 6665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10230318..10231237) /note="source:CACAO_M_S_E6875_F7_scaffold_2 3229 4147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10231952..10234132 /note="source:CACAO_M_E11587_F277_scaffold_2 1 2184" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10234127..10237481) /note="source:INTACT781_F89_scaffold_5-int 4169 7509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10234857..10239337 /note="source:CACAO_M_S_E65068_F306_scaffold_5 6124 10610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10239339..10242336 /note="source:CACAO_M_S_E18358_F7_scaffold_3 1 2998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10242337..10244710) /note="source:CACAO_M_E85348_F277_scaffold_11 1 2379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10246107..10246171 /note="source:INTACT90_F13_scaffold_4-int 12158 12217" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10246254..10251302) /locus_tag="TCM_013197" /note="dbxref CacaoGD:Thecc1EG013197" mRNA complement(join(10246254..10246600,10250531..10250682, 10250800..10250928,10251005..10251075,10251152..10251302)) /locus_tag="TCM_013197" /product="Organic cation/carnitine transporter1, putative" /inference="similar to AA sequence:Phytozome:Glyma16g34220.2" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" mobile_element complement(10247092..10247193) /note="source:CACAO_M_E36038_F90_scaffold_5 392 499" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10247382..10247459 /note="source:CACAO_M_S_E64023_F13_scaffold_5 24678 24756" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10250252..10266490) /locus_tag="TCM_013198" /note="dbxref CacaoGD:Thecc1EG013198" mRNA complement(join(10250252..10250299,10263224..10263481, 10264264..10264428,10264526..10264986,10266183..10266490)) /locus_tag="TCM_013198" /product="Organic cation/carnitine transporter1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031186t2" /inference="similar to AA sequence:Phytozome:Glyma16g34220.2" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(join(10250587..10250682,10250800..10250928, 10251005..10251075,10251152..10251254)) /locus_tag="TCM_013197" /codon_start=1 /product="Organic cation/carnitine transporter1, putative" /protein_id="EOY21510.1" /db_xref="Phytozome:Glyma16g34220.2" /db_xref="TAIR:AT1G73220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4Y3" /translation="MASEGERDVTANDKNENLWTVKWAAKRMIMIMIPVVLNALMEIP AVFVGCVLLNFITNGQSKGDGSDGCWPQLTIKAIGFMVASVVFDVLYIYCVKLFPTNA FSILNGILSLWLPETRNSPLYETLEQQEKE" mobile_element complement(10251274..10251874) /note="source:INTACT160_F4_scaffold_7-int 1245 1844" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10251874..10254829 /note="source:INTACT241_F183_scaffold_6-int 3834 6755" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10254830..10262991) /note="source:INTACT11_F4_scaffold_8-int 1 8153" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(10263291..10263481,10264264..10264428, 10264526..10264715)) /locus_tag="TCM_013198" /note="paralog of Thecc1EG031186t2" /codon_start=1 /product="Organic cation/carnitine transporter1, putative" /protein_id="EOY21511.1" /db_xref="Phytozome:Glyma16g34220.2" /db_xref="TAIR:AT1G73220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4Y3" /translation="MEEEDVRELVHGKENSVEAKLELTVDEVVEGYVGSFGFSQLLHV LLVSFAWIFDSQNTLITIFTSNKRQTGPVSGLAAGTWEWIGGNTTSTIAEWGLVCDRK FLAALPASLFFVGSILGCAFYGRLADACFGRKKTLLLAFILTFTTTFITSLSPNVWIY ALLRFANGFARSGIGICCLVL" gene complement(10266107..10289222) /locus_tag="TCM_013199" /note="dbxref CacaoGD:Thecc1EG013199" mRNA complement(join(10266107..10266411,10286705..10286773, 10286859..10286901,10288039..10288115,10288251..10288541, 10288623..10288702,10288791..10288893,10289020..10289222)) /locus_tag="TCM_013199" /product="Acyl-CoA N-acyltransferases superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000383001" /inference="similar to AA sequence:Phytozome:POPTR_0012s03830.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2698t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2698t2; inference alignment:Newbler:10:TSA:cgbaL_g14493t00001" mRNA complement(join(10266107..10266411,10284755..10284811, 10286705..10286773,10286859..10286901,10288039..10288115, 10288251..10288541,10288623..10288702,10288791..10288893, 10289020..10289222)) /locus_tag="TCM_013199" /product="Acyl-CoA N-acyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000383001" /inference="similar to AA sequence:Phytozome:POPTR_0012s03830.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2698t3; alternateUTRof:Thecc1EG013199t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2698t2; inference alignment:Newbler:10:TSA:cgbaL_g14493t00001" mRNA complement(join(10266107..10266411,10282901..10282974, 10284755..10284811,10286705..10286773,10286859..10286901, 10288039..10288115,10288251..10288541,10288623..10288702, 10288791..10288893,10289020..10289222)) /locus_tag="TCM_013199" /product="Acyl-CoA N-acyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000383001" /inference="similar to AA sequence:Phytozome:POPTR_0012s03830.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2698t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2698t2" CDS complement(join(10266388..10266411,10286705..10286773, 10286859..10286901,10288039..10288115,10288251..10288541, 10288623..10288702,10288791..10288893,10289020..10289067)) /locus_tag="TCM_013199" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein isoform 5" /protein_id="EOY21516.1" /db_xref="Phytozome:POPTR_0012s03830.1" /db_xref="TAIR:AT1G18335.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I1V6" /translation="MESRRESEKKKLKRSEILEKKKAIDQSIKAASAQTDQLASFPPF RCFNRNGLCVRLESGRGDKLSPCMKQCIQSLLKANMEGPYGSEWAAEEKVKRREMVAP EARYIFVHSNANEMTVDDAPSPSPLLGFVHYRFTVEQEITVLYLYEIQLDSSVQGKGL GKFLMHLIELIARKNHMGALVLTVQKANSLAMKFYMSKLRFVISSISPSRVNPLVGVE NNYEILCKTFDPDAKAILEVSTDWID" mobile_element complement(10266402..10268793) /note="source:INTACT89_F140_scaffold_9-int 1 2359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10268794..10268891 /note="source:INTACT59_F126_scaffold_9-int 2458 2550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10268872..10281162) /note="source:INTACT89_F140_scaffold_9-int 1903 14290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10281323..10283147) /note="source:INTACT89_F140_scaffold_9-int 14198 16020" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(10282569..10282702,10282901..10282974, 10284755..10284811,10286705..10286773,10286859..10286901, 10288039..10288115,10288251..10288541,10288623..10288702, 10288791..10288893,10289020..10289222)) /locus_tag="TCM_013199" /product="Acyl-CoA N-acyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000383001" /inference="similar to AA sequence:Phytozome:POPTR_0012s03830.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2698t6; alternateUTRof:Thecc1EG013199t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2698t2; inference alignment:Newbler:10:TSA:cgbaL_g14493t00001" mobile_element 10283128..10283205 /note="source:CACAO_on_S_E46_scaffold_2 9565 9638" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(10283166..10283209) /note="source:CACAO_M_S_E16721_F36_scaffold_2 3152 3195" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(10284800..10284811,10286705..10286773, 10286859..10286901,10288039..10288115,10288251..10288541, 10288623..10288702,10288791..10288893,10289020..10289067)) /locus_tag="TCM_013199" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein isoform 1" /protein_id="EOY21512.1" /db_xref="Phytozome:POPTR_0012s03830.1" /db_xref="TAIR:AT1G18335.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I1V6" /translation="MESRRESEKKKLKRSEILEKKKAIDQSIKAASAQTDQLASFPPF RCFNRNGLCVRLESGRGDKLSPCMKQCIQSLLKANMEGPYGSEWAAEEKVKRREMVAP EARYIFVHSNANEMTVDDAPSPSPLLGFVHYRFTVEQEITVLYLYEIQLDSSVQGKGL GKFLMHLIELIARKNHMGALVLTVQKANSLAMKFYMSKLRFVISSISPSRVNPLVGVE NNYEILCKTFDPDAKAILEESE" CDS complement(join(10284800..10284811,10286705..10286773, 10286859..10286901,10288039..10288115,10288251..10288541, 10288623..10288702,10288791..10288893,10289020..10289067)) /locus_tag="TCM_013199" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein isoform 1" /protein_id="EOY21513.1" /db_xref="Phytozome:POPTR_0012s03830.1" /db_xref="TAIR:AT1G18335.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I1V6" /translation="MESRRESEKKKLKRSEILEKKKAIDQSIKAASAQTDQLASFPPF RCFNRNGLCVRLESGRGDKLSPCMKQCIQSLLKANMEGPYGSEWAAEEKVKRREMVAP EARYIFVHSNANEMTVDDAPSPSPLLGFVHYRFTVEQEITVLYLYEIQLDSSVQGKGL GKFLMHLIELIARKNHMGALVLTVQKANSLAMKFYMSKLRFVISSISPSRVNPLVGVE NNYEILCKTFDPDAKAILEESE" CDS complement(join(10284800..10284811,10286705..10286773, 10286859..10286901,10288039..10288115,10288251..10288541, 10288623..10288702,10288791..10288893,10289020..10289067)) /locus_tag="TCM_013199" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein isoform 1" /protein_id="EOY21514.1" /db_xref="Phytozome:POPTR_0012s03830.1" /db_xref="TAIR:AT1G18335.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I1V6" /translation="MESRRESEKKKLKRSEILEKKKAIDQSIKAASAQTDQLASFPPF RCFNRNGLCVRLESGRGDKLSPCMKQCIQSLLKANMEGPYGSEWAAEEKVKRREMVAP EARYIFVHSNANEMTVDDAPSPSPLLGFVHYRFTVEQEITVLYLYEIQLDSSVQGKGL GKFLMHLIELIARKNHMGALVLTVQKANSLAMKFYMSKLRFVISSISPSRVNPLVGVE NNYEILCKTFDPDAKAILEESE" mRNA complement(join(10285855..10286135,10286705..10286773, 10286859..10286901,10288039..10288115,10288251..10288541, 10288623..10288702,10288791..10288893,10289020..10289156)) /locus_tag="TCM_013199" /product="Acyl-CoA N-acyltransferases superfamily protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000383001" /inference="similar to AA sequence:Phytozome:POPTR_0012s03830.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01022t00003; inference alignment:Newbler:10:TSA:cgbaL_g14493t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2698t2" mRNA complement(join(10285855..10286196,10286705..10286773, 10286859..10286901,10288039..10288115,10288251..10288541, 10288623..10288702,10288791..10288893,10289020..10289156)) /locus_tag="TCM_013199" /product="Acyl-CoA N-acyltransferases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000383001" /inference="similar to AA sequence:Phytozome:POPTR_0012s03830.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01022t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2698t2; inference alignment:Newbler:10:TSA:cgbaL_g14493t00001" mRNA complement(join(10285965..10286135,10286705..10286773, 10286859..10286901,10288039..10288115,10288251..10288541, 10288623..10288893,10289020..10289222)) /locus_tag="TCM_013199" /product="Acyl-CoA N-acyltransferases superfamily protein isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000383001" /inference="similar to AA sequence:frave:gene09329" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2698t7; inference alignment:Newbler:10:TSA:cgbaP2_g02187t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2698t2" CDS complement(join(10286082..10286135,10286705..10286773, 10286859..10286901,10288039..10288115,10288251..10288541, 10288623..10288702,10288791..10288893,10289020..10289067)) /locus_tag="TCM_013199" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein isoform 6" /protein_id="EOY21517.1" /db_xref="Phytozome:POPTR_0012s03830.1" /db_xref="TAIR:AT1G18335.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I1V6" /translation="MESRRESEKKKLKRSEILEKKKAIDQSIKAASAQTDQLASFPPF RCFNRNGLCVRLESGRGDKLSPCMKQCIQSLLKANMEGPYGSEWAAEEKVKRREMVAP EARYIFVHSNANEMTVDDAPSPSPLLGFVHYRFTVEQEITVLYLYEIQLDSSVQGKGL GKFLMHLIELIARKNHMGALVLTVQKANSLAMKFYMSKLRFVISSISPSRVNPLVGVE NNYEILCKTFDPDAKAILELQHCHIMKIEWEDYLIL" CDS complement(join(10286082..10286135,10286705..10286773, 10286859..10286901,10288039..10288115,10288251..10288541, 10288623..10288652)) /locus_tag="TCM_013199" /note="encoded by transcript variant 8; alternatively spliced; dbxref frave:gene09329" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein isoform 8" /protein_id="EOY21519.1" /db_xref="TAIR:AT1G18335.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I1V6" /translation="MKQCIQSLLKANMEGPYGSEWAAEEKVKRREMVAPEARYIFVHS NANEMTVDDAPSPSPLLGFVHYRFTVEQEITVLYLYEIQLDSSVQGKGLGKFLMHLIE LIARKNHMGALVLTVQKANSLAMKFYMSKLRFVISSISPSRVNPLVGVENNYEILCKT FDPDAKAILELQHCHIMKIEWEDYLIL" CDS complement(join(10286179..10286196,10286705..10286773, 10286859..10286901,10288039..10288115,10288251..10288541, 10288623..10288702,10288791..10288893,10289020..10289067)) /locus_tag="TCM_013199" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein isoform 4" /protein_id="EOY21515.1" /db_xref="Phytozome:POPTR_0012s03830.1" /db_xref="TAIR:AT1G18335.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I1V6" /translation="MESRRESEKKKLKRSEILEKKKAIDQSIKAASAQTDQLASFPPF RCFNRNGLCVRLESGRGDKLSPCMKQCIQSLLKANMEGPYGSEWAAEEKVKRREMVAP EARYIFVHSNANEMTVDDAPSPSPLLGFVHYRFTVEQEITVLYLYEIQLDSSVQGKGL GKFLMHLIELIARKNHMGALVLTVQKANSLAMKFYMSKLRFVISSISPSRVNPLVGVE NNYEILCKTFDPDAKAILEVNNGD" mRNA complement(join(<10286638..10286773,10286859..10286901, 10288039..10288115,10288251..10288541,10288623..10288702, 10288791..10288893,10289020..10289222)) /locus_tag="TCM_013199" /product="Acyl-CoA N-acyltransferases superfamily protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000383001" /inference="similar to AA sequence:Phytozome:POPTR_0012s03830.1" /note="transcript variant 7; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2698t8; inference alignment:Newbler:10:TSA:cgbaL_g14493t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2698t2" CDS complement(join(<10286639..10286773,10286859..10286901, 10288039..10288115,10288251..10288541,10288623..10288702, 10288791..10288893,10289020..10289067)) /locus_tag="TCM_013199" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein isoform 7" /protein_id="EOY21518.1" /db_xref="Phytozome:POPTR_0012s03830.1" /db_xref="TAIR:AT1G18335.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I1V6" /translation="MESRRESEKKKLKRSEILEKKKAIDQSIKAASAQTDQLASFPPF RCFNRNGLCVRLESGRGDKLSPCMKQCIQSLLKANMEGPYGSEWAAEEKVKRREMVAP EARYIFVHSNANEMTVDDAPSPSPLLGFVHYRFTVEQEITVLYLYEIQLDSSVQGKGL GKFLMHLIELIARKNHMGALVLTVQKANSLAMKFYMSKLRFVISSISPSRVNPLVGVE NNYEILCKTFDPDAKAILEVYSVQCRCYYHVIYILLNSSIC" mobile_element 10294906..10297843 /note="source:CACAO_M_E13376_F33_scaffold_3 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10299658..10301530) /note="source:INTACT160_F4_scaffold_7-int 12801 14612" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10304157..10304282 /note="source:scaffold_3_CACTA_0382 915 1043" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10306181..10309088 /note="source:INTACT50_F121_scaffold_4-int 1 2914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10307091..10310248 /note="source:scaffold_1_CACTA_0024 5598 8825" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10310251..10313074 /note="source:CACAO_M_S_E18371_F15_scaffold_3 1 2824" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10311864..10333011) /locus_tag="TCM_013205" /note="dbxref CacaoGD:Thecc1EG013205" mRNA complement(join(10311864..10312572,10319610..10320303, 10321501..10322304,10332962..10333011)) /locus_tag="TCM_013205" /product="CCHC-type integrase, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039829.22" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023614t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018780001" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage" CDS complement(join(10312535..10312572,10319610..10320303, 10321501..10322295)) /locus_tag="TCM_013205" /note="paralog of Thecc1EG023614t1" /codon_start=1 /product="CCHC-type integrase, putative" /protein_id="EOY21520.1" /db_xref="Phytozome:GSVIVT01018780001" /translation="MTVSEYDIKFTQLARYAPYLVSTEEMKIQRFVDGLVEPLFRAVA SRDFTTYSAAVDRAQRIEMRTNESRAARDRAKRGKTEGYQGRRDFSSGGSSSSRQGPQ RDSRLPQQGSDAPGANIRVGQRTFNSRRQQDSRQSSQVIRSCDTCGRRHSGRCFLTTK TCYGCGQPGHIRRDCPMAHQSPDSARGSTQPASSAPSVAVSSGREVSGSRGRGAGTSS QGRPSGSGHQSSIGRGQARVFALTQQEAQTSNAVVSGILSVCNMNAREGIRVNTKKIE AVEKWPRPTSVTEIRSFVGLAGYYRRFVKDFSKIVAPLTKLTRKDTKFEWSDACENSF EKLKACLTTAPVLSLPQGTRGYTVFCDASGVGLGCVLMQHGKVIAYASRQLKRHEQNY PIHDLEMAAIVFALKIWRHYLYGETCEIYTDHKSLKYIFQQRDLNLRQRRWMELLKDY DCTILYHPGKANVVADALSRKSMGSLAHISIGRRSLVREIHSLGDIGQVYGENLEING " mobile_element complement(10313075..10315872) /note="source:CACAO_M_E12221_F121_scaffold_3 2431 5185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10315862..10315929 /note="source:INTACT649F_F368_scaffold_5-int 4137 4204" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10319567..10320344) /note="source:CACAO_M_S_E50960_F369_scaffold_4 5601 6378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10321495..10322139) /note="source:CACAO_M_S_E50960_F369_scaffold_4 3831 4475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10322184..10322567) /note="source:CACAO_M_S_E50960_F369_scaffold_4 3449 3832" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10324705..10325538 /note="source:INTACT649F_F368_scaffold_5-int 6035 6869" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10325534..10326322) /note="source:CACAO_M_E12221_F121_scaffold_3 1678 2442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10326323..10327398 /note="source:CACAO_M_E14227_F12_scaffold_3 1 1075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10327395..10328036) /note="source:CACAO_M_E12221_F121_scaffold_3 8920 9180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10328035..10330676 /note="source:CACAO_M_E58324_F9_scaffold_9 7667 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10330676..10331965 /note="source:CACAO_M_E58324_F9_scaffold_9 8044 9357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10331990..10334510) /note="source:CACAO_M_S_E85957_F12_scaffold_7 11235 12670" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10333978..10337886) /note="source:INTACT649F_F368_scaffold_5-int 775 4632" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10334508..10338734 /note="source:CACAO_M_E14113_F106_scaffold_3 16553 20784" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10338735..10339130 /note="source:scaffold_8_CACTA_0859 15441 15836" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10340683..10341882 /note="source:CACAO_M_E14113_F106_scaffold_3 1 1198" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10341883..10344859) /note="source:CACAO_M_S_E66239_F143_scaffold_5 1 2984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10344860..10345735 /note="source:CACAO_M_E14113_F106_scaffold_3 22781 23654" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(10348922..10367221) /locus_tag="TCM_013210" /note="dbxref CacaoGD:Thecc1EG013210" mRNA complement(join(10348922..10349818,10350430..10350532, 10350666..10350824,10364424..10364684,10367213..10367221)) /locus_tag="TCM_013210" /product="Uncharacterized protein" /note="quality class is weak, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(join(10349699..10349818,10350430..10350532, 10350666..10350706)) /locus_tag="TCM_013210" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21521.1" /translation="MVLSKLWLVKVYGWQVCRGSVLDEVTSDRRLELARYAPESIAMK HPTIATSDTQLQLLNSLMSANIVETTMAYVGSGGARLPDAITW" mobile_element 10350864..10350928 /note="source:CACAO_M_E1841_F5_scaffold_1 15772 15836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10360447..10360497) /note="source:CACAO_M_E5899_F5_scaffold_2 8913 8963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10360510..10361397) /note="source:CACAO_M_E5899_F5_scaffold_2 9335 10228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10367110..10367547 /note="source:INTACT280_F60_scaffold_5-int 13870 14308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10368167..10368304 /note="source:scaffold_5_CACTA_0591 6353 6476" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10369345..10369478 /note="source:CACAO_M_E44868_F328_scaffold_6 3045 3171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10369362..10369669) /note="source:CACAO_M_E35674_F13_scaffold_5 3111 3420" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10369753..10373968 /note="source:INTACT490_F228_scaffold_6-int 1 4189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10374069..10380062 /note="source:INTACT490_F228_scaffold_6-int 4137 10151" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10382409..10382589) /note="source:CACAO_M_E3248_F5_scaffold_1 2435 2620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10385780..10390036 /note="source:CACAO_M_E69228_F89_scaffold_9 1 4282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10390037..10393005 /note="source:CACAO_M_E13398_F245_scaffold_3 1 2969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10393006..10397700 /note="source:CACAO_M_S_E65068_F306_scaffold_5 7099 11784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10394708..10398879) /note="source:INTACT781_F89_scaffold_5-int 1 4173" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10394997..10395735) /locus_tag="TCM_013214" /note="dbxref CacaoGD:Thecc1EG013214" mRNA complement(join(10394997..10395282,10395379..10395735)) /locus_tag="TCM_013214" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036214t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage" CDS complement(join(10395089..10395282,10395379..10395631)) /locus_tag="TCM_013214" /note="paralog of Thecc1EG036214t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21522.1" /translation="MSVFDRDAYVLIDSGSDRPYVSTTFASFSDRNLSPLEEEIVVNT PLGEKLVRNTCYRDCGVMVGEEEFKGDLIPLEIRDFDLILGEHRVLPSCVISAIKALK LVQKGYPTYLAHMIDTSKGEPKLEDVSIVNEFSDIFLDELPGLPPD" mobile_element 10398880..10399027 /note="source:scaffold_5_CACTA_0610 7240 7386" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10398893..10400003) /note="source:CACAO_M_E5627_F4_scaffold_2 1 1148" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10400072..10400506) /note="source:scaffold_5_CACTA_0610 776 1210" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10402789..10402880) /note="source:scaffold_9_CACTA_0930 1410 1500" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10406764..10410847) /note="source:INTACT28_F14_scaffold_3-int 6124 10244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10410850..10411821) /note="source:CACAO_M_S_E121774_F134_scaffold_10 1998 2969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10411922..10413899) /note="source:CACAO_M_E297_F134_scaffold_1 1 1969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10418118..10418173) /note="source:CACAO_M_E59641_F12_scaffold_9 1720 1775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10418163..10418205) /note="source:CACAO_M_E42503_F14_scaffold_5 4168 4210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10418206..10423551 /note="source:CACAO_M_S_E18397_F231_scaffold_3 1 2683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10423552..10424943) /note="source:INTACT28_F14_scaffold_3-int 1 1454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10426266..10426320 /note="source:CACAO_M_E23991_F4_scaffold_4 14427 14477" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10429402..10429750 /note="source:CACAO_M_E5326_F22_scaffold_2 19812 20162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10429751..10440326 /note="source:CACAO_M_S_E18399_F231_scaffold_3 1 18852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10440313..10442894 /note="source:INTACT170_F12_scaffold_5-int 4624 6834" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10441525..10443389) /locus_tag="TCM_013219" /note="dbxref CacaoGD:Thecc1EG013219" mRNA complement(join(10441525..10441901,10441975..10442041, 10442184..10442260,10443181..10443389)) /locus_tag="TCM_013219" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2640t1" CDS complement(join(10441774..10441901,10441975..10442041, 10442184..10442260,10443181..10443238)) /locus_tag="TCM_013219" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21523.1" /translation="MRIRDVSMIDESMDYDSIIAQNGPYLLQQDVSSSFLKLPTPFSC QKKKKEKRERKKKSLVLVIQAKKAKIGLIGEKLVTFKLINPWVHEGPKWKRKTVSLTL VLKPTVS" mobile_element complement(10443253..10443908) /note="source:INTACT443_F215_scaffold_4-int 829 1475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10443909..10444815) /note="source:CACAO_M_E24592_F195_scaffold_4 2982 3873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10444917..10446617) /note="source:INTACT595F_F13_scaffold_4-int 2445 4051" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10446614..10449576) /note="source:CACAO_M_S_E173_F215_scaffold_1 2082 5057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10450078..10450168 /note="source:CACAO_M_E3884_F22_scaffold_1 13090 13179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10450288..10450350 /note="source:CACAO_M_E3884_F22_scaffold_1 13222 13277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10451994..10454199 /note="source:CACAO_M_S_E89272_F5_scaffold_8 6734 8883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10454188..10457880 /note="source:CACAO_M_E23991_F4_scaffold_4 6208 9874" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10459072..10459742 /note="source:INTACT83_F5_scaffold_9-int 11474 12146" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10459735..10467545) /note="source:INTACT83_F5_scaffold_9-int 1 7786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10467604..10467690) /note="source:CACAO_M_E23991_F4_scaffold_4 16051 16136" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10467691..10469176 /note="source:INTACT701_F305_scaffold_10-int 3369 4872" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10469169..10469311 /note="source:CACAO_M_E23991_F4_scaffold_4 7969 8111" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10469347..10469735 /note="source:INTACT215F_F14_scaffold_3-int 11162 11550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10470754..10471207) /note="source:CACAO_M_E35674_F13_scaffold_5 3264 3703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10471209..10473983 /note="source:CACAO_M_S_E18409_F79_scaffold_3 1 2775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10473984..10474128 /note="source:CACAO_M_S_E31635_F14_scaffold_3 4560 4704" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10474062..10474158) /note="source:INTACT293_F14_scaffold_5-int 8639 8743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10476274..10476928) /note="source:CACAO_M_E23991_F4_scaffold_4 13955 14386" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10478435..10479511) /note="source:CACAO_M_S_E89272_F5_scaffold_8 6730 7790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10479508..10480668) /note="source:scaffold_9_CACTA_0931 1 1169" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10481308..10481388 /note="source:INTACT83_F5_scaffold_9-int 12573 12652" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10482220..10499965 /locus_tag="TCM_013222" /note="dbxref CacaoGD:Thecc1EG013222" mRNA join(10482220..10482786,10483453..10483526, 10483609..10483672,10484359..10484471,10484562..10484609, 10484818..10484889,10485003..10485092,10485363..10485536, 10485758..10485841,10486875..10486930,10490987..10491117, 10491191..10491283,10491544..10491608,10492666..10492809, 10492895..10492938,10493833..10493916,10494003..10494076, 10494147..10494259,10494341..10494436,10499507..10499638, 10499735..10499965) /locus_tag="TCM_013222" /product="3,4-dihydroxy-2-butanone kinase, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012941001" /inference="similar to AA sequence:Phytozome:GSVIVT01012941001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2897t4" CDS join(10482747..10482786,10483453..10483526, 10483609..10483672,10484359..10484471,10484562..10484609, 10484818..10484889,10485003..10485092,10485363..10485536, 10485758..10485841,10486875..10486930,10490987..10491117, 10491191..10491283,10491544..10491608,10492666..10492809, 10492895..10492938,10493833..10493916,10494003..10494076, 10494147..10494259,10494341..10494436,10499507..10499632) /locus_tag="TCM_013222" /codon_start=1 /product="3,4-dihydroxy-2-butanone kinase, putative" /protein_id="EOY21524.1" /db_xref="Phytozome:GSVIVT01012941001" /db_xref="TAIR:AT3G17770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04059" /translation="MAFQGKKLINNPNDVVTEFIEGLVETYPGLQYLDGFPEVKVVIR ADVSGATYDKVAVISGGGSGHEPAHAGFVGEGMLTASICGDVFASPPVDSILAGIRAV TGPMGCLLIVTNYTGDRLNFGLAAEQARSEGYKIETVIVGDDCALPPPRGIAGRRGLA GTILVNKVAGAAAAAGLSLADVASEAKCASEMVGTMGVALSVCTLPGQVTSDRLGPGK MELGLGIHGEPGAAVADLQPVDVVVSHALKQILSPETNYVPITRGNRVVLMINGLGAT PVMELMIAAGKTVPKLQLEFGLAVERVYTGSFMTSLDMAGFSISIMKADQTLLQRLDA PTKAPNWPVGSAGNRPPAKIPVPLPPSRSMKSEESLSRPLQLSEQGRILEVAIEAAAN AVIDMRDSLNDWDSKVGDGDCGSTMYRGATAILDDMKKYYPLNDAAETVNEIGSSVRR AMGGTSGVLYTIFCKAAYARLKANLDSTVTAKQWAEGLEAAIDAVSKYGGASAGYRTL LDALIPALAVLKERLSAGADPSTAFVVSSEAALEGAESTKDMQAQAGRSSYVSVGILS TVPDPGAMAAAVWYRAAALAVKDKYRAS" mobile_element 10495082..10497647 /note="source:CACAO_M_E13414_F1_scaffold_3 1 2566" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10495235..10496949) /locus_tag="TCM_013224" /note="dbxref CacaoGD:Thecc1EG013224" mRNA complement(10495235..10496949) /locus_tag="TCM_013224" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene16247.10" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035725t1" /inference="similar to AA sequence:Phytozome:Glyma02g36320.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(10495430..10496668) /locus_tag="TCM_013224" /note="paralog of Thecc1EG035725t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21525.1" /db_xref="Phytozome:Glyma02g36320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BWT5" /translation="MVADRYYWPKMRRDVERLVKRCPACLFGKGSAQNTGLYVPLPEP DAPWIHLSMDFVLGLPKTAKGFDSIFVVVDRFSKMAHFIPCFRTFDATHIAELFFREV VRLHGIPTSIVSNRDVKFMGHFWKTLWRKFGTELKYSSTCHPQTDGQTKVVNRSLGNM LRYLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEAR VSNKGELFADHIRKIHEEVKAALKASNAEYSFTANQHRRKQEFDEGDQVLVHLRQERF PKGTYHKLKSRKFGPCKVLKKISSNAYLIELPPELQISPIFNVLDLYPFDGCDGTAST IDGQIQHLPIAKVEVIEDVLDVKEVRSRRENPYRRFLVKWLGKPANESTWIAEEELKR VDPDIYEEYVKAYSSESSLF" mobile_element complement(10502166..10502390) /note="source:CACAO_M_E65323_F12_scaffold_9 9592 9808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10502392..10505095 /note="source:CACAO_M_E13416_F345_scaffold_3 1 2679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10506080..10506372 /note="source:scaffold_2_CACTA_0260 27 319" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10506365..10506399) /note="source:CACAO_M_E3248_F5_scaffold_1 6081 6115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10509267..10515938) /note="source:CACAO_M_S_E145697_F13_scaffold_11 3010 10064" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10515939..10522408 /note="source:CACAO_M_E1021_F7_scaffold_1 1 6469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10522382..10525766 /note="source:INTACT672_F7_scaffold_8-int 6881 10264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10525767..10529081) /note="source:CACAO_M_E52239_F256_scaffold_7 1 3341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10529854..10532682 /note="source:CACAO_M_E13426_F15_scaffold_3 1 2778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10532806..10532856 /note="source:CACAO_M_E52253_F12_scaffold_7 1032 1081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10537566..10538841 /note="source:CACAO_M_E52239_F256_scaffold_7 19810 21105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10538842..10541786 /note="source:CACAO_M_E13432_F246_scaffold_3 1 2944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10542127..10543151 /note="source:INTACT1443F_F12_scaffold_9-int 9948 10941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10543053..10543163) /note="source:INTACT170_F12_scaffold_5-int 1166 1277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10546952..10546973 /note="source:CACAO_M_E23144_F272_scaffold_4 8135 8321" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10546974..10547144) /note="source:CACAO_M_S_E31635_F14_scaffold_3 4532 4702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10548833..10549610) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10550327..10550462 /note="source:CACAO_M_S_E99567_F4_scaffold_9 1 137" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10550464..10551595) /note="source:CACAO_M_S_E84261_F4_scaffold_6 649 1786" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10551594..10553206 /note="source:INTACT10_F4_scaffold_6-int 1309 2930" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10554768..10554945) /note="source:scaffold_6_CACTA_0702 1 178" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10556270..10558129 /note="source:CACAO_M_E56681_F47_scaffold_8 1 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10558130..10561263 /note="source:CACAO_M_S_E64916_F7_scaffold_5 1 3135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10561264..10561401 /note="source:CACAO_M_E4665_F47_scaffold_2 1861 1982" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10562626..10563912) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5808 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10564029..10564795) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5120 5903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10568351..10570160) /note="source:CACAO_M_S_E68231_F4_scaffold_6 1 1861" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10572586..10575388 /note="source:CACAO_M_E65104_F7_scaffold_9 1 2541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10575394..10575499) /note="source:INTACT609_F90_scaffold_2-int 9562 9667" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10575500..10575514) /note="source:CACAO_M_S_E83372_F14_scaffold_6 18205 18328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10576547..10576622) /note="source:CACAO_M_S_E64832_F14_scaffold_5 12601 12676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10577002..10577063) /note="source:CACAO_M_S_E32752_F12_scaffold_4 4107 4174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10577053..10578211 /note="source:CACAO_M_E84368_F4_scaffold_10 4505 5665" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10578202..10578334 /note="source:CACAO_M_E84368_F4_scaffold_10 6011 6144" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10583221..10583529) /note="source:scaffold_6_CACTA_0702 1 309" /mobile_element_type="transposon:TIR/CACTA" gene complement(10586333..10587289) /locus_tag="TCM_013233" /note="dbxref CacaoGD:Thecc1EG013233" mRNA complement(10586333..10587289) /locus_tag="TCM_013233" /product="ZF-HD homeobox protein" /inference="alignment:exonerate-protein:2:frave:gene09326" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001008t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03770.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1471t1" CDS complement(10586715..10587251) /locus_tag="TCM_013233" /note="paralog of Thecc1EG001008t1" /codon_start=1 /product="ZF-HD homeobox protein" /protein_id="EOY21526.1" /db_xref="Phytozome:POPTR_0012s03770.1" /translation="MEKEYPNDLYRECLRNHAASLGSYATDGCGEFTLDDTSPSNLQC AACGCHRNFHRKVSYCSSSRSHGDPENTVELIDYGDGGSGGRRPVVVESTGAADRCGK KRFRTKFTAEQKEKMLGFAEKLGWKLQRRDEEDEVEKFCRAIGVSRQVFKVWMHNHKS SSSTSSASTCNVSSLTTQ" mobile_element 10587298..10587346 /note="source:INTACT146F_F14_scaffold_2-int 13438 13489" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10590132..10593519 /note="source:CACAO_M_E43175_F215_scaffold_5 1 3448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10593512..10601787) /note="source:INTACT612_F91_scaffold_5-int 1 8250" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(10599863..10608573) /locus_tag="TCM_013235" /note="dbxref CacaoGD:Thecc1EG013235" mRNA complement(join(10599863..10599872,10606895..10607916, 10608025..10608573)) /locus_tag="TCM_013235" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" mobile_element complement(10601788..10601867) /note="source:scaffold_9_CACTA_0931 1 76" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10602641..10602698 /note="source:scaffold_1_CACTA_0011 9497 9554" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10602883..10603529) /note="source:scaffold_9_CACTA_0931 1 644" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(10607041..10607916,10608025..10608318)) /locus_tag="TCM_013235" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21527.1" /translation="MKLLAKADNACRRGRAWQRGHDTTGHANFEGTLLQKSPHGDTWE NSKNSFIKSTLRAAPFSLVDVRLVDESGLGGHFGAEDAREKEPAFPATNGTSRQARPA AVLSREPAAEQRTGANGKDDKGDLSAGEKFVTISAKPQARLSDVQENFHTNGLQITMG EKEMMALIAASRSDAVQGKRGKKNKKKKNNNVRNERDMELIALAEEWMGVPKLMQEDA SEHSKIHFYMPPNQTATGPQGDNQQMAESKEGGQTGPMDTLEGSGEHSPIIEKSQTTG NNKLVSIVACSRDRIEAYAENPPNMEPVSDKCMYNKEISDVPSVSFVFETNFADIEVH PRIRRRRHSNTEVSIDEILSLASDKAVDMGENDEASDEDAISVNFAAHWERERYF" gene complement(10608536..10609506) /locus_tag="TCM_013236" /note="dbxref CacaoGD:Thecc1EG013236" mRNA complement(join(10608536..10609404,10609476..10609506)) /locus_tag="TCM_013236" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026877t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(10608889..10609404,10609476..10609487)) /locus_tag="TCM_013236" /note="paralog of Thecc1EG026877t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21528.1" /translation="MCMYEKSALLLIAKTIGKPLYIDEATATRSRPSVARVCVEYDCR KDPVEQVWIVVKDRVSGTVTGCYMQRVEFSKIPEYCGHCCHVGHAVSTCLVLGNRPAN LEKAQVSKTLREDKRKTTKGEADPRQKQKKGKEQMLPVQTKQSEQWQPIGKPEGSETK EATGQKSEGKNLGQG" mobile_element complement(10609484..10609779) /note="source:INTACT537_F22_scaffold_2-int 8917 9212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10609764..10610092 /note="source:CACAO_M_E85113_F12_scaffold_10 12051 12340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10610074..10612728 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17615 20247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10612719..10615588 /note="source:CACAO_M_E85113_F12_scaffold_10 285 3048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10615474..10615967) /note="source:CACAO_M_E294_F134_scaffold_1 1425 1919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10615950..10618487 /note="source:CACAO_M_S_E17000_F33_scaffold_3 398 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10618488..10619388 /note="source:CACAO_M_E52239_F256_scaffold_7 2892 3788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10619378..10620817 /note="source:INTACT213_F172_scaffold_10-int 8600 10096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10621301..10621468 /note="source:CACAO_M_E11662_F12_scaffold_2 6873 7031" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10622562..10622931) /note="source:CACAO_M_E49857_F85_scaffold_7 20682 21045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10622930..10624464 /note="source:CACAO_M_E85113_F12_scaffold_10 6690 8223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10624465..10627107 /note="source:CACAO_M_E13455_F144_scaffold_3 1 2643" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10627108..10632037 /note="source:CACAO_M_E85113_F12_scaffold_10 8163 13200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10632046..10636258 /note="source:CACAO_M_S_E173_F215_scaffold_1 5 4221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10636259..10639025 /note="source:CACAO_M_E57750_F172_scaffold_9 1 2063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10639026..10641852 /note="source:CACAO_M_E13460_F15_scaffold_3 1 2827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10641853..10650766 /note="source:INTACT213_F172_scaffold_10-int 2040 10927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10650767..10653000) /note="source:INTACT65_F13_scaffold_1-int 3815 6049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10653001..10654482) /note="source:CACAO_M_E43175_F215_scaffold_5 4266 5744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10654471..10654529 /note="source:CACAO_M_E59641_F12_scaffold_9 1720 1775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10654481..10656520) /note="source:INTACT95_F143_scaffold_9-int 8257 10294" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10654521..10657339 /note="source:CACAO_M_E13466_F15_scaffold_3 41 2836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10657340..10657917 /note="source:INTACT85_F9_scaffold_4-int 888 1446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10658250..10661145 /note="source:CACAO_M_E13467_F247_scaffold_3 1 2896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10661628..10661715) /note="source:scaffold_3_CACTA_0388 9947 10042" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10662310..10662999) /note="source:INTACT167_F5_scaffold_2-int 5017 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10662996..10663525 /note="source:CACAO_M_E5899_F5_scaffold_2 19648 20159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10663597..10663820 /note="source:scaffold_3_CACTA_0382 10413 10623" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10664784..10665650 /note="source:CACAO_M_E5899_F5_scaffold_2 21827 22695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10667245..10667902) /note="source:INTACT39F_F22_scaffold_1-int 6779 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10668279..10668882) /note="source:INTACT39F_F22_scaffold_1-int 5788 6398" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10669073..10669456) /note="source:INTACT39F_F22_scaffold_1-int 4426 4786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10669517..10669909) /note="source:INTACT39F_F22_scaffold_1-int 3566 3941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10670095..10670220) /note="source:scaffold_3_CACTA_0382 9744 9868" /mobile_element_type="transposon:TIR/CACTA" gene complement(10672778..10678245) /locus_tag="TCM_013244" /note="dbxref CacaoGD:Thecc1EG013244" mRNA complement(join(10672778..10674851,10675685..10675759, 10675886..10675971,10677899..10678245)) /locus_tag="TCM_013244" /product="DNA/RNA polymerases superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400057828.15" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009243t1" /note="transcript variant 1; alternatively spliced; quality class is strong-expresste, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1381t1" mRNA complement(join(10673138..10674851,10675720..10675759, 10675886..10675997,10676116..10676365)) /locus_tag="TCM_013244" /product="DNA/RNA polymerases superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400057828.15" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009243t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2696t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1381t1" CDS complement(join(10673649..10674851,10675685..10675759, 10675886..10675971,10677899..10678094)) /locus_tag="TCM_013244" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG009243t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein, putative isoform 1" /protein_id="EOY21529.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLE9" /translation="MGFKFVAGLLKENPNCKRRTMVRLFYIKTKLVVEGRGREETRKG KERGSHCWKGLGQQGRRRRGLRPIPSSVANLNSLTGQITSALFNEFSYRLVPFPAKRV KLFRLCKSSYHTDIFDCVKMPPRTRAMARDTLEQDALNDASARPLVDCSKDHGKGGRP TKSTKAEPPRTRPADVQSQVGGDHPVGGATLDDVVAELKGVNRVLEVLANEIIDQRQR DDGHLTVQAPSSSHGQDEQQHFELAQGSVVVTLSEFLELKPPLFSGFDSSKDPQQFLD DMEKVCGALGSSGTRSVELVSFKLKDVAQIWFESFRRGRSLRSTPLTWEEFSVAFMDR SLPASVRYGEAREFEVLVQTRTMSVSEYDIRFTQLSRYAPYLVPTEEMKVKRFVDGLV WPLFRAIGPQRFDSYSSAVDCARRIEMRSVESCVAHVKTKKARMEGHQVCSDSSTSPV HDQRTFSPLRQQFSEQGSQFIAPCPTCGKRYRGQCLLATSTCYSCGQVGHVRKNCPRS QHSEGPFHGFR" CDS complement(10673649..10674845) /locus_tag="TCM_013244" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG009243t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein, putative isoform 2" /protein_id="EOY21530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLE9" /translation="MPPRTRAMARDTLEQDALNDASARPLVDCSKDHGKGGRPTKSTK AEPPRTRPADVQSQVGGDHPVGGATLDDVVAELKGVNRVLEVLANEIIDQRQRDDGHL TVQAPSSSHGQDEQQHFELAQGSVVVTLSEFLELKPPLFSGFDSSKDPQQFLDDMEKV CGALGSSGTRSVELVSFKLKDVAQIWFESFRRGRSLRSTPLTWEEFSVAFMDRSLPAS VRYGEAREFEVLVQTRTMSVSEYDIRFTQLSRYAPYLVPTEEMKVKRFVDGLVWPLFR AIGPQRFDSYSSAVDCARRIEMRSVESCVAHVKTKKARMEGHQVCSDSSTSPVHDQRT FSPLRQQFSEQGSQFIAPCPTCGKRYRGQCLLATSTCYSCGQVGHVRKNCPRSQHSEG PFHGFR" mobile_element 10686795..10689621 /note="source:CACAO_M_S_E6619_F15_scaffold_2 4 2837" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10689812..10730273) /locus_tag="TCM_013246" /note="dbxref CacaoGD:Thecc1EG013246" mRNA complement(join(10689812..10689846,10729454..10730273)) /locus_tag="TCM_013246" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element 10692246..10692698 /note="source:CACAO_M_E58962_F13_scaffold_9 1 453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10692699..10695801 /note="source:CACAO_M_S_E18486_F51_scaffold_3 1 3103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10697894..10698032) /note="source:CACAO_M_E58819_F24_scaffold_9 16168 16277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10700603..10700678 /note="source:CACAO_M_E5899_F5_scaffold_2 22624 22705" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10702642..10702864) /note="source:CACAO_M_E58715_F13_scaffold_9 881 1124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10702656..10702854 /note="source:CACAO_M_E58962_F13_scaffold_9 14368 14565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10702848..10702927) /note="source:CACAO_M_S_E64023_F13_scaffold_5 634 713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10702928..10705933 /note="source:CACAO_M_E13482_F324_scaffold_3 1 3006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10705934..10706211) /note="source:CACAO_M_E58715_F13_scaffold_9 350 627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10706212..10706696 /note="source:scaffold_9_CACTA_0937 6413 6936" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10720344..10720520 /note="source:CACAO_M_E453_F12_scaffold_1 12881 13058" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10720491..10727727 /note="source:CACAO_M_E72770_F13_scaffold_10 734 7977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10727717..10728941 /note="source:CACAO_M_E49126_F13_scaffold_6 7579 8793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10728942..10729425) /note="source:CACAO_M_E33213_F12_scaffold_4 8120 8598" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(10729690..10729935) /locus_tag="TCM_013246" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21531.1" /translation="MRVLKQQEENRSCTKLKQLVEKQIINQSKVPTSALSEAISTDGI KALQVKITGGISATVPTFHHPCKHTNSHKRTEIKSTS" mobile_element 10730541..10730978 /note="source:CACAO_M_E10579_F96_scaffold_2 1 438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10731079..10732137 /note="source:CACAO_M_E10579_F96_scaffold_2 835 1893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10733381..10734236 /note="source:CACAO_M_E45504_F98_scaffold_6 3252 4107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10734646..10736074 /note="source:CACAO_M_E69217_F98_scaffold_9 4125 5553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10737118..10737535 /note="source:CACAO_M_E45504_F98_scaffold_6 6990 7407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10742748..10743036) /note="source:INTACT649F_F368_scaffold_5-int 4138 4426" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10742942..10743064) /note="source:CACAO_M_E3884_F22_scaffold_1 7013 7130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10743039..10743293) /note="source:scaffold_4_CACTA_0490 10 277" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10743665..10745278) /note="source:CACAO_M_S_E64832_F14_scaffold_5 2651 4311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10745885..10748677) /note="source:INTACT293_F14_scaffold_5-int 8178 11448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10748663..10749088) /note="source:CACAO_M_S_E64832_F14_scaffold_5 1927 2353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10750708..10752446) /note="source:CACAO_M_E33933_F9_scaffold_4 23294 25029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10752434..10753486) /note="source:CACAO_M_E33933_F9_scaffold_4 20604 21679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10753486..10753905 /note="source:CACAO_M_E84908_F12_scaffold_10 3024 3429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10753817..10754365) /note="source:CACAO_M_E43348_F5_scaffold_5 4384 4991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10754346..10754985 /note="source:CACAO_M_E84908_F12_scaffold_10 3788 4430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10756169..10757633) /note="source:CACAO_M_E3884_F22_scaffold_1 14080 15572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10761574..10764227 /note="source:CACAO_M_S_E146024_F345_scaffold_11 1 2684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10765776..10765918 /note="source:INTACT1332F_F13_scaffold_8-int 3503 3632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10765807..10766861) /note="source:CACAO_M_E85507_F96_scaffold_11 1481 2536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10769364..10769468) /note="source:CACAO_M_S_E1495_F60_scaffold_1 1869 1976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10769453..10769714) /note="source:CACAO_M_E35674_F13_scaffold_5 6508 6788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10769481..10770787 /note="source:scaffold_4_CACTA_0490 11362 12575" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10770565..10770813 /note="source:CACAO_M_E13946_F322_scaffold_3 1852 2114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10770601..10770811) /note="source:CACAO_M_E13172_F96_scaffold_3 694 909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10773688..10774798) /note="source:CACAO_M_E58324_F9_scaffold_9 7662 8808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10775870..10778868 /note="source:CACAO_M_E13495_F277_scaffold_3 1 2999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10779804..10782262 /note="source:CACAO_M_E13496_F259_scaffold_3 1 2459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10785229..10785519 /note="source:scaffold_8_CACTA_0859 15426 15721" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10786517..10787057) /note="source:scaffold_2_CACTA_0262 7981 8555" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10788574..10789059) /note="source:scaffold_3_CACTA_0382 10369 10853" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10789048..10790952) /note="source:scaffold_2_CACTA_0262 14627 16502" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10790954..10800710 /note="source:INTACT213_F172_scaffold_10-int 1178 10927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10800569..10800726 /note="source:CACAO_LINE_E_211_scaffold_8 4912 5064" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(10800707..10803733) /note="source:scaffold_2_CACTA_0262 8003 11020" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10805229..10805718) /note="source:scaffold_3_CACTA_0382 10369 10854" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10805891..10815946) /note="source:INTACT771_F78_scaffold_10-int 1 10061" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10815947..10816436) /note="source:scaffold_2_CACTA_0262 5420 5910" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10816953..10819794 /note="source:CACAO_M_S_E18520_F15_scaffold_3 1 2842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10819795..10819832) /note="source:CACAO_M_E59641_F12_scaffold_9 1688 1726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10820418..10820529) /note="source:CACAO_M_E12297_F14_scaffold_3 21388 21500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10821065..10821928) /note="source:CACAO_M_E5899_F5_scaffold_2 24866 25428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10821442..10822418 /note="source:scaffold_9_CACTA_0931 15319 16299" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10821929..10823142) /note="source:CACAO_M_E58819_F24_scaffold_9 14984 16268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10822599..10824437 /note="source:CACAO_M_E13496_F259_scaffold_3 572 2459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10824438..10824772 /note="source:CACAO_M_S_E85177_F5_scaffold_7 713 1048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10824773..10824836) /note="source:CACAO_M_E5899_F5_scaffold_2 22625 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10826115..10827644 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1285 2851" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10827647..10830122 /note="source:CACAO_M_E58324_F9_scaffold_9 21588 24071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10830107..10830319) /note="source:CACAO_M_S_E19828_F19_scaffold_3 6833 7043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10830320..10837183) /note="source:INTACT11_F4_scaffold_8-int 1863 8750" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10837184..10838393 /note="source:INTACT1223F_F374_scaffold_6-int 1 1199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10838577..10838747 /note="source:INTACT1223F_F374_scaffold_6-int 1398 1568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10838634..10842726) /note="source:INTACT789_F335_scaffold_1-int 4053 8166" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10842727..10843195) /note="source:CACAO_M_S_E32427_F42_scaffold_3 2623 3090" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10845718..10846193) /note="source:CACAO_M_S_E54636_F42_scaffold_5 3914 4388" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10846603..10847127 /note="source:INTACT1223F_F374_scaffold_6-int 6634 7158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10847228..10847567) /note="source:CACAO_M_S_E32427_F42_scaffold_3 2625 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10847669..10847848 /note="source:CACAO_M_S_E4987_F42_scaffold_1 520 699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10848093..10848340) /note="source:CACAO_M_E43974_F42_scaffold_5 1906 2153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10849098..10849431) /note="source:CACAO_M_E55561_F42_scaffold_8 817 1149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10850031..10850264) /note="source:CACAO_M_E51884_F42_scaffold_7 1 234" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10850265..10852925 /note="source:INTACT1223F_F374_scaffold_6-int 8322 10911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10852920..10854073) /note="source:INTACT135F_F90_scaffold_2-int 7582 8734" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10854074..10854713 /note="source:CACAO_M_E33309_F141_scaffold_4 1 643" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10856416..10856918) /note="source:CACAO_M_S_E55801_F42_scaffold_5 430 932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10857642..10859340) /note="source:CACAO_M_E69295_F141_scaffold_9 1 1700" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10859341..10860759) /note="source:INTACT518_F239_scaffold_2-int 6891 8332" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10860771..10861528) /note="source:CACAO_M_E84896_F4_scaffold_10 1072 1828" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10862715..10865483 /note="source:CACAO_M_S_E85473_F233_scaffold_7 3223 5946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10865476..10867401 /note="source:INTACT506_F233_scaffold_3-int 3045 4923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10867402..10869206 /note="source:CACAO_M_E13532_F86_scaffold_3 1 1805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10869536..10870328 /note="source:CACAO_M_E13532_F86_scaffold_3 1806 2598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10870329..10872534 /note="source:CACAO_M_S_E84376_F22_scaffold_6 13750 15935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10873746..10873905 /note="source:INTACT506_F233_scaffold_3-int 9941 10104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10873968..10877747 /note="source:CACAO_Mariner_E229_scaffold_9 6030 9887" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 10877605..10878574 /note="source:INTACT167_F5_scaffold_2-int 230 1200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10879774..10882363 /note="source:CACAO_M_E13540_F369_scaffold_3 1 2590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10883829..10885430) /note="source:CACAO_M_S_E68231_F4_scaffold_6 258 1861" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10887472..10887786) /note="source:CACAO_M_S_E4534_F4_scaffold_1 2659 2975" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10887789..10887833) /note="source:CACAO_M_S_E64832_F14_scaffold_5 10131 10175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10887830..10892571 /note="source:INTACT724_F4_scaffold_8-int 1584 6354" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10889767..10893727) /note="source:INTACT10_F4_scaffold_6-int 1858 5094" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10893041..10893981 /note="source:CACAO_M_E36038_F90_scaffold_5 57 1042" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10893334..10897370 /note="source:INTACT73_F14_scaffold_4-int 233 4303" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10895569..10896868) /locus_tag="TCM_013255" /note="dbxref CacaoGD:Thecc1EG013255" mRNA complement(10895569..10896868) /locus_tag="TCM_013255" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013728t1" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage" CDS complement(10896343..10896843) /locus_tag="TCM_013255" /note="paralog of Thecc1EG013728t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21532.1" /translation="MEKSRQFQEVLEKKKGKWPLEESSQFEIQKKKKKILHTSEIEKS RKKMTKKGHKTEKKKEKGKSVKKGNISFSNFRNKAHEDRYRKLENAPISCGKFIGWDS FNEILEIQTSLSNYFEELKLKEFSTFKNRFYSASLVKEFYASIALDKDELEDSDDCIE DSLNVF" mobile_element complement(10897372..10898153) /note="source:CACAO_M_E11662_F12_scaffold_2 7716 8500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10898253..10899353) /note="source:CACAO_M_E13038_F22_scaffold_3 12541 13640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10899354..10902087 /note="source:CACAO_M_E13542_F15_scaffold_3 1 2734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10902088..10902189) /note="source:CACAO_M_E11662_F12_scaffold_2 6581 6682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10902197..10902280) /note="source:CACAO_M_S_E146091_F272_scaffold_11 3817 3900" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10902210..10902799 /note="source:CACAO_M_E42514_F40_scaffold_5 15207 15793" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10902781..10903234 /note="source:CACAO_M_E22348_F13_scaffold_3 8307 8759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10903235..10904243 /note="source:scaffold_1_CACTA_0011 8036 9045" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10903889..10904338 /note="source:CACAO_M_E84908_F12_scaffold_10 9256 9689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10904525..10905509) /note="source:CACAO_M_E33933_F9_scaffold_4 1058 2028" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10905586..10905753) /note="source:CACAO_M_E11098_F15_scaffold_2 6470 6637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10905847..10906085) /note="source:CACAO_M_E11098_F15_scaffold_2 6246 6486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10908293..10908455) /note="source:INTACT189_F49_scaffold_5-int 17794 17961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10908598..10908723) /note="source:INTACT189_F49_scaffold_5-int 17651 17774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10909695..10909774 /note="source:CACAO_M_E3248_F5_scaffold_1 6808 6888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10909711..10910813) /note="source:CACAO_M_E43348_F5_scaffold_5 1 1125" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10917275..10917364) /note="source:CACAO_M_E84179_F14_scaffold_10 9561 9650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10917353..10919681 /note="source:CACAO_M_E13220_F12_scaffold_3 10051 12419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10920962..10921560) /note="source:CACAO_M_S_E99574_F14_scaffold_9 21316 21912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10921861..10923695 /note="source:CACAO_on_S_E58_scaffold_2 11794 13625" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(10923786..10925184) /note="source:scaffold_1_CACTA_0011 7521 8959" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10924999..10925642 /note="source:CACAO_M_S_E4534_F4_scaffold_1 3529 4076" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10925820..10926315 /note="source:CACAO_M_E3248_F5_scaffold_1 3772 4270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10926318..10932035 /note="source:CACAO_M_S_E54692_F12_scaffold_5 2 5695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10932036..10935027) /note="source:CACAO_M_E42823_F7_scaffold_5 1 2995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10934917..10935043 /note="source:INTACT205_F15_scaffold_2-int 2607 2734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10935029..10938769) /note="source:INTACT132_F12_scaffold_9-int 644 4441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10938770..10941218) /note="source:CACAO_M_E36228_F245_scaffold_5 543 2991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10941218..10946045 /note="source:CACAO_on_S_E58_scaffold_2 5827 10658" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(10944046..10947600) /note="source:CACAO_M_E8481_F245_scaffold_2 1 3544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10947632..10947706) /note="source:CACAO_M_E5899_F5_scaffold_2 24466 24538" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10947708..10947837) /note="source:CACAO_M_E1841_F5_scaffold_1 8387 8518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10955115..10956081) /note="source:CACAO_M_E35511_F5_scaffold_5 12726 13654" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10956068..10957286) /note="source:CACAO_M_E5899_F5_scaffold_2 21850 22695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10957287..10960088 /note="source:CACAO_M_S_E52220_F15_scaffold_5 4 3560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10960362..10961693) /note="source:INTACT597_F267_scaffold_2-int 13007 13943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10961690..10963006) /note="source:CACAO_M_E35511_F5_scaffold_5 2259 3573" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10973286..10975484) /note="source:scaffold_3_CACTA_0382 9719 11908" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10975486..10986369 /note="source:INTACT807_F54_scaffold_3-int 1 10884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10986667..10986781 /note="source:CACAO_M_E58819_F24_scaffold_9 16169 16278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10988258..10988333) /note="source:CACAO_M_E4704_F345_scaffold_2 2651 2723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10988269..10988327 /note="source:INTACT695_F301_scaffold_5-int 1917 1976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10988328..10988825) /note="source:INTACT93F_F345_scaffold_2-int 17175 17669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10989298..10989809) /note="source:CACAO_M_E85507_F96_scaffold_11 1112 1623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10990700..10991561) /note="source:INTACT93F_F345_scaffold_2-int 14698 15550" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 10991562..11001561 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 11001566..11003638 /note="source:INTACT93F_F345_scaffold_2-int 18176 20308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11003639..11004200) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3600 4162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11004201..11007185 /note="source:CACAO_M_E13581_F15_scaffold_3 1 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11007186..11007715) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3031 3570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11007713..11008180) /note="source:INTACT84_F12_scaffold_5-int 8712 9069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11008151..11008486 /note="source:INTACT280_F60_scaffold_5-int 8686 9026" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11008215..11008484) /note="source:CACAO_M_S_E84376_F22_scaffold_6 18293 18563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11008550..11009177 /note="source:CACAO_M_E1841_F5_scaffold_1 8958 9625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11009293..11010802 /note="source:CACAO_M_E1841_F5_scaffold_1 15218 16675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11015095..11015678 /note="source:CACAO_M_E65323_F12_scaffold_9 7736 8331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11015679..11018252 /note="source:CACAO_M_S_E18609_F144_scaffold_3 1 3257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11018253..11019750 /note="source:CACAO_M_E65323_F12_scaffold_9 8357 9852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11020109..11020652) /note="source:INTACT215F_F14_scaffold_3-int 9572 10119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11021477..11021609 /note="source:scaffold_1_CACTA_0011 9423 9555" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11021945..11023840 /note="source:CACAO_M_E1841_F5_scaffold_1 8328 9510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11023844..11024138 /note="source:INTACT280_F60_scaffold_5-int 14015 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11024133..11024289) /note="source:CACAO_Mariner_E229_scaffold_9 12426 12582" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(11024280..11024320) /note="source:CACAO_M_S_E84376_F22_scaffold_6 8932 8972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11025864..11026329 /note="source:INTACT405F_F91_scaffold_4-int 16621 17105" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11027494..11027630) /note="source:CACAO_M_E33933_F9_scaffold_4 9888 9947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11027797..11029927) /note="source:CACAO_M_E33933_F9_scaffold_4 714 2766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11031054..11031601 /note="source:scaffold_1_CACTA_0011 7515 8069" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11031602..11047259 /note="source:CACAO_M_E13604_F90_scaffold_3 1 15658" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11047260..11048223 /note="source:scaffold_1_CACTA_0011 8065 9045" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11048225..11048948) /note="source:CACAO_M_E11098_F15_scaffold_2 6240 6965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11053837..11056531 /note="source:CACAO_M_S_E18636_F345_scaffold_3 1 2695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11062998..11064705 /note="source:scaffold_9_CACTA_0927 4273 5973" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11065019..11065685 /note="source:scaffold_9_CACTA_0927 15377 16035" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11067434..11068426) /note="source:CACAO_Again_on_E205_scaffold_9 375 1368" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(11068420..11068692) /note="source:scaffold_9_CACTA_0927 5611 5876" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11070506..11071679 /note="source:CACAO_M_E42342_F98_scaffold_5 1 1175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11081325..11081996) /note="source:INTACT649F_F368_scaffold_5-int 4141 4799" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11084470..11084729) /note="source:INTACT1373F_F385_scaffold_8-int 1 261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11085005..11085123) /note="source:scaffold_9_CACTA_0927 15942 16061" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11086933..11086946) /note="source:CACAO_M_E49559_F88_scaffold_7 9172 9185" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11086947..11086995 /note="source:CACAO_M_E22484_F328_scaffold_3 1 52" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11087029..11087492 /note="source:CACAO_M_E49063_F215_scaffold_6 116 578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11087489..11089072) /note="source:INTACT280_F60_scaffold_5-int 9343 10918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11089232..11089772 /note="source:scaffold_9_CACTA_0927 15509 16035" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11092697..11096287 /note="source:CACAO_M_E84523_F247_scaffold_10 1253 4842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11096270..11099331 /note="source:CACAO_M_E84523_F247_scaffold_10 5180 8227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11099332..11099365) /note="source:CACAO_M_E44709_F9_scaffold_6 4583 4610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11099370..11100186 /note="source:CACAO_M_E11639_F86_scaffold_2 1 816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11100288..11102380 /note="source:CACAO_M_E43465_F86_scaffold_5 819 2913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11107761..11110675 /note="source:CACAO_M_E84523_F247_scaffold_10 13 2920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11110675..11111872) /note="source:scaffold_9_CACTA_0927 4276 5499" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11111894..11113744) /note="source:INTACT594_F265_scaffold_8-int 3628 5472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11113769..11114624) /note="source:INTACT594_F265_scaffold_8-int 2272 3100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11116803..11118274 /note="source:CACAO_M_E13626_F215_scaffold_3 1 1472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11120054..11120137) /note="source:CACAO_M_S_E5285_F300_scaffold_1 19273 19358" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11120565..11121768) /note="source:INTACT453_F4_scaffold_9-int 16946 18123" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11122420..11123414 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5810 6805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11133752..11135945) /note="source:INTACT1327F_F381_scaffold_8-int 6064 8261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11136534..11137585 /note="source:CACAO_M_S_E51220_F51_scaffold_4 1 1051" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11138024..11144230 /locus_tag="TCM_013274" /note="dbxref CacaoGD:Thecc1EG013274" mRNA join(11138024..11138726,11141978..11142053, 11142434..11142482,11144022..11144230) /locus_tag="TCM_013274" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc8059t1" CDS join(11138532..11138726,11141978..11142053, 11142434..11142482,11144022..11144115) /locus_tag="TCM_013274" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21533.1" /translation="MKRKEMTQKLSKRKERKKERKTMGEEKKRNKKFYSFLGTVLLHF EEGKESFLLQFLEEEKAKNFEVVSPLIRVKISYLRTKNKSTPNSSYSYCSGRVFVDQP IKGARFDTSNSLKLNTTLLLAMKNLFHPYKLIKFQ" mobile_element complement(11139740..11139803) /note="source:scaffold_3_CACTA_0382 1861 1923" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11139752..11139814 /note="source:scaffold_3_CACTA_0382 1861 1924" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11140094..11140683) /note="source:INTACT1327F_F381_scaffold_8-int 5145 5731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11141485..11143541) /note="source:CACAO_M_S_E19121_F51_scaffold_3 1 2059" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(11144331..11155079) /locus_tag="TCM_013275" /note="dbxref CacaoGD:Thecc1EG013275" mRNA complement(join(11144331..11145281,11145437..11145580, 11146352..11146630,11146715..11146757,11147258..11147537, 11148374..11149739,11152727..11153980,11154740..11154838)) /locus_tag="TCM_013275" /product="Kinase domain-containing protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g29970.1" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g009933.1" /inference="similar to AA sequence:ricco:29662.m000453" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc393t1; inference alignment:Newbler:10:TSA:cgbaL_g02931t00001" mRNA complement(join(11144332..11145281,11145437..11145580, 11146352..11146630,11146715..11146822,11147258..11147537, 11148374..11149739,11152727..11153980,11154740..11155079)) /locus_tag="TCM_013275" /product="Kinase domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g29970.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03670.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b012821t1a2; alternateUTRof:Thecc1EG013275t1; inference alignment:Newbler:10:TSA:cgbaL_g02931t00001" mRNA complement(join(11144332..11145281,11145437..11145580, 11146352..11146630,11146715..11146822,11147258..11147537, 11148374..11149739,11152727..11153980,11154588..11154658, 11154740..11155079)) /locus_tag="TCM_013275" /product="Kinase domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g29970.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03670.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02931t00001" CDS complement(join(11145093..11145281,11145437..11145580, 11146352..11146630,11146715..11146822,11147258..11147537, 11148374..11149739,11152727..11153927)) /locus_tag="TCM_013275" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Kinase domain-containing protein isoform 1" /protein_id="EOY21534.1" /db_xref="Phytozome:POPTR_0012s03670.1" /db_xref="TAIR:AT1G73460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HQ88" /translation="MTEPSSVDVILDFLRRNRFTRAEAALRSELGNRPDLNGFLQKLN LEEKDSGKVLEEENGKKPAGESHGSGSRNCGEASKELIVKEIECGAGRNGSESKWRNA ASTGERSKPNEAKVTSDKGFTFTKSSEDTVLKLQSWNFNPSNGPDLFKNDGFVSSTSF SELEMPDQSRYRTADAPDTDKANVKSGEEIVYSGEMKTTWLGNTSKANVESKYDKIHT SETKELDQQFKTGSAYYKENFADNSTWCRSEEPTSSSSELWKDCSVKTVFPFPKGDVS ISYDAATGSEKREGKKKADAIDVRAAIKEQVDEVGRALFFGKSQGSSEQKGISGLAFS LASDNSKEEFPRLPPVKLKSEEKSLNVNWEEKYERDGPVAKLTSADSTFLMGSYLDVP IGQEINSSGGKRTGGGSWLSVSQGIAEDASDLVSGFATVGDGLSESVDYPNEYWDSDE YDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGQTKDEDDDQSF AEEDSYFSGEQYFQAKNVEPVSASDDPIGLSINEMYGRTHENDLIAQYDGQLMDEEEL NLMRAEPVWQGFVTQTNELIMLGDGKVLNEHGRSRLDDICIDDDQHGSVRSIGVGINS DAADIGSEVRESLVGGSSEGDLEYFHDHDVASGGSRQSHQETDRKYIDKSIRDKRKTN KNDSNKYVIGNDKGACPQVKNIADGGFSFPPPLRDGQLVQARSSKPLWSSNCNSAGDE HDDCFNALVGSDDMLATWRRKSSDSSTVKSSRDENNANAARSATSSPSTLSNYGYGEQ EQTKKEEDEKISGVREEDPGASLEDEEAAAVQEQMRQIKAQEEEFETFNLKIVHRKNR TGFEEDKNFHVVLNSVVAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDF FDQSLDEIKLLKYVNKHDPADKHHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRE SGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGS SCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDVWSLGCILAELCTGNVLFQNDSPAT LLARVIGIVGPIEQDMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLP MGDQGFIDFVAHLLEVNPKKRPSAAEALKHPWLSYPYEPISA" CDS complement(join(11145093..11145281,11145437..11145580, 11146352..11146630,11146715..11146822,11147258..11147537, 11148374..11149739,11152727..11153927)) /locus_tag="TCM_013275" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Kinase domain-containing protein isoform 1" /protein_id="EOY21535.1" /db_xref="Phytozome:POPTR_0012s03670.1" /db_xref="TAIR:AT1G73460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HQ88" /translation="MTEPSSVDVILDFLRRNRFTRAEAALRSELGNRPDLNGFLQKLN LEEKDSGKVLEEENGKKPAGESHGSGSRNCGEASKELIVKEIECGAGRNGSESKWRNA ASTGERSKPNEAKVTSDKGFTFTKSSEDTVLKLQSWNFNPSNGPDLFKNDGFVSSTSF SELEMPDQSRYRTADAPDTDKANVKSGEEIVYSGEMKTTWLGNTSKANVESKYDKIHT SETKELDQQFKTGSAYYKENFADNSTWCRSEEPTSSSSELWKDCSVKTVFPFPKGDVS ISYDAATGSEKREGKKKADAIDVRAAIKEQVDEVGRALFFGKSQGSSEQKGISGLAFS LASDNSKEEFPRLPPVKLKSEEKSLNVNWEEKYERDGPVAKLTSADSTFLMGSYLDVP IGQEINSSGGKRTGGGSWLSVSQGIAEDASDLVSGFATVGDGLSESVDYPNEYWDSDE YDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGQTKDEDDDQSF AEEDSYFSGEQYFQAKNVEPVSASDDPIGLSINEMYGRTHENDLIAQYDGQLMDEEEL NLMRAEPVWQGFVTQTNELIMLGDGKVLNEHGRSRLDDICIDDDQHGSVRSIGVGINS DAADIGSEVRESLVGGSSEGDLEYFHDHDVASGGSRQSHQETDRKYIDKSIRDKRKTN KNDSNKYVIGNDKGACPQVKNIADGGFSFPPPLRDGQLVQARSSKPLWSSNCNSAGDE HDDCFNALVGSDDMLATWRRKSSDSSTVKSSRDENNANAARSATSSPSTLSNYGYGEQ EQTKKEEDEKISGVREEDPGASLEDEEAAAVQEQMRQIKAQEEEFETFNLKIVHRKNR TGFEEDKNFHVVLNSVVAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDF FDQSLDEIKLLKYVNKHDPADKHHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRE SGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGS SCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDVWSLGCILAELCTGNVLFQNDSPAT LLARVIGIVGPIEQDMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLP MGDQGFIDFVAHLLEVNPKKRPSAAEALKHPWLSYPYEPISA" mRNA complement(join(11145256..11145281,11145437..11145539, 11146352..11146630,11146715..11146822,11147258..11147537, 11148374..11149739,11152727..11153980,11154740..11154838)) /locus_tag="TCM_013275" /product="Kinase domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g29970.1" /inference="similar to AA sequence:ricco:29662.m000453" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc393t2; inference alignment:Newbler:10:TSA:cgbaL_g02931t00001" CDS complement(join(11145513..11145539,11146352..11146630, 11146715..11146822,11147258..11147537,11148374..11149739, 11152727..11153927)) /locus_tag="TCM_013275" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29662.m000453" /codon_start=1 /product="Kinase domain-containing protein isoform 3" /protein_id="EOY21536.1" /db_xref="TAIR:AT1G73460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HQ88" /translation="MTEPSSVDVILDFLRRNRFTRAEAALRSELGNRPDLNGFLQKLN LEEKDSGKVLEEENGKKPAGESHGSGSRNCGEASKELIVKEIECGAGRNGSESKWRNA ASTGERSKPNEAKVTSDKGFTFTKSSEDTVLKLQSWNFNPSNGPDLFKNDGFVSSTSF SELEMPDQSRYRTADAPDTDKANVKSGEEIVYSGEMKTTWLGNTSKANVESKYDKIHT SETKELDQQFKTGSAYYKENFADNSTWCRSEEPTSSSSELWKDCSVKTVFPFPKGDVS ISYDAATGSEKREGKKKADAIDVRAAIKEQVDEVGRALFFGKSQGSSEQKGISGLAFS LASDNSKEEFPRLPPVKLKSEEKSLNVNWEEKYERDGPVAKLTSADSTFLMGSYLDVP IGQEINSSGGKRTGGGSWLSVSQGIAEDASDLVSGFATVGDGLSESVDYPNEYWDSDE YDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGQTKDEDDDQSF AEEDSYFSGEQYFQAKNVEPVSASDDPIGLSINEMYGRTHENDLIAQYDGQLMDEEEL NLMRAEPVWQGFVTQTNELIMLGDGKVLNEHGRSRLDDICIDDDQHGSVRSIGVGINS DAADIGSEVRESLVGGSSEGDLEYFHDHDVASGGSRQSHQETDRKYIDKSIRDKRKTN KNDSNKYVIGNDKGACPQVKNIADGGFSFPPPLRDGQLVQARSSKPLWSSNCNSAGDE HDDCFNALVGSDDMLATWRRKSSDSSTVKSSRDENNANAARSATSSPSTLSNYGYGEQ EQTKKEEDEKISGVREEDPGASLEDEEAAAVQEQMRQIKAQEEEFETFNLKIVHRKNR TGFEEDKNFHVVLNSVVAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDF FDQSLDEIKLLKYVNKHDPADKHHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRE SGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGS SCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDVWSLGCILAELCTGNGNWNRRSH" mRNA complement(join(<11145514..11145580,11146352..11146822, 11147258..11147537,11148374..11149739,11152727..11153980, 11154740..11155078)) /locus_tag="TCM_013275" /product="Kinase domain-containing protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g29970.1" /inference="similar to AA sequence:ricco:29662.m000453" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc392t3; inference alignment:Newbler:10:TSA:cgbaL_g02931t00001" CDS complement(join(<11145515..11145580,11146352..11146822, 11147258..11147537,11148374..11149739,11152727..11153927)) /locus_tag="TCM_013275" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29662.m000453" /codon_start=1 /product="Kinase domain-containing protein isoform 5" /protein_id="EOY21538.1" /db_xref="TAIR:AT1G73460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HQ88" /translation="MTEPSSVDVILDFLRRNRFTRAEAALRSELGNRPDLNGFLQKLN LEEKDSGKVLEEENGKKPAGESHGSGSRNCGEASKELIVKEIECGAGRNGSESKWRNA ASTGERSKPNEAKVTSDKGFTFTKSSEDTVLKLQSWNFNPSNGPDLFKNDGFVSSTSF SELEMPDQSRYRTADAPDTDKANVKSGEEIVYSGEMKTTWLGNTSKANVESKYDKIHT SETKELDQQFKTGSAYYKENFADNSTWCRSEEPTSSSSELWKDCSVKTVFPFPKGDVS ISYDAATGSEKREGKKKADAIDVRAAIKEQVDEVGRALFFGKSQGSSEQKGISGLAFS LASDNSKEEFPRLPPVKLKSEEKSLNVNWEEKYERDGPVAKLTSADSTFLMGSYLDVP IGQEINSSGGKRTGGGSWLSVSQGIAEDASDLVSGFATVGDGLSESVDYPNEYWDSDE YDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGQTKDEDDDQSF AEEDSYFSGEQYFQAKNVEPVSASDDPIGLSINEMYGRTHENDLIAQYDGQLMDEEEL NLMRAEPVWQGFVTQTNELIMLGDGKVLNEHGRSRLDDICIDDDQHGSVRSIGVGINS DAADIGSEVRESLVGGSSEGDLEYFHDHDVASGGSRQSHQETDRKYIDKSIRDKRKTN KNDSNKYVIGNDKGACPQVKNIADGGFSFPPPLRDGQLVQARSSKPLWSSNCNSAGDE HDDCFNALVGSDDMLATWRRKSSDSSTVKSSRDENNANAARSATSSPSTLSNYGYGEQ EQTKKEEDEKISGVREEDPGASLEDEEAAAVQEQMRQIKAQEEEFETFNLKIVHRKNR TGFEEDKNFHVVLNSVVAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDF FDQSLDEIKLLKYVNKHDPADKHHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRE SGGEVYFTMPRLQVSGELFSSEELLISGLLFCNLVLNSSVQSITIQCLEALQFLHGLG LIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDK KIDVWSLGCILAELCTGNVLFQNDSPATLLARVIGIVGPI" CDS complement(join(11146566..11146630,11146715..11146757, 11147258..11147537,11148374..11149739,11152727..11153927)) /locus_tag="TCM_013275" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29662.m000453" /codon_start=1 /product="Kinase domain-containing protein isoform 4" /protein_id="EOY21537.1" /db_xref="TAIR:AT1G73460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HQ88" /translation="MTEPSSVDVILDFLRRNRFTRAEAALRSELGNRPDLNGFLQKLN LEEKDSGKVLEEENGKKPAGESHGSGSRNCGEASKELIVKEIECGAGRNGSESKWRNA ASTGERSKPNEAKVTSDKGFTFTKSSEDTVLKLQSWNFNPSNGPDLFKNDGFVSSTSF SELEMPDQSRYRTADAPDTDKANVKSGEEIVYSGEMKTTWLGNTSKANVESKYDKIHT SETKELDQQFKTGSAYYKENFADNSTWCRSEEPTSSSSELWKDCSVKTVFPFPKGDVS ISYDAATGSEKREGKKKADAIDVRAAIKEQVDEVGRALFFGKSQGSSEQKGISGLAFS LASDNSKEEFPRLPPVKLKSEEKSLNVNWEEKYERDGPVAKLTSADSTFLMGSYLDVP IGQEINSSGGKRTGGGSWLSVSQGIAEDASDLVSGFATVGDGLSESVDYPNEYWDSDE YDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGQTKDEDDDQSF AEEDSYFSGEQYFQAKNVEPVSASDDPIGLSINEMYGRTHENDLIAQYDGQLMDEEEL NLMRAEPVWQGFVTQTNELIMLGDGKVLNEHGRSRLDDICIDDDQHGSVRSIGVGINS DAADIGSEVRESLVGGSSEGDLEYFHDHDVASGGSRQSHQETDRKYIDKSIRDKRKTN KNDSNKYVIGNDKGACPQVKNIADGGFSFPPPLRDGQLVQARSSKPLWSSNCNSAGDE HDDCFNALVGSDDMLATWRRKSSDSSTVKSSRDENNANAARSATSSPSTLSNYGYGEQ EQTKKEEDEKISGVREEDPGASLEDEEAAAVQEQMRQIKAQEEEFETFNLKIVHRKNR TGFEEDKNFHVVLNSVVAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDF FDQSLDEIKLLKYVNKHDPADKHHILRLYDYFYYRGIRWRGLLHNAEIAVNYHSVFGG SPVFAWSWPNTL" mobile_element 11156947..11158848 /note="source:CACAO_M_E52819_F33_scaffold_8 1 1905" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11158949..11160002 /note="source:scaffold_8_CACTA_0858 12663 13715" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11160114..11160255 /note="source:INTACT453_F4_scaffold_9-int 17078 17218" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11160857..11161723 /note="source:CACAO_M_S_E89272_F5_scaffold_8 6734 7561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11161718..11161919 /note="source:CACAO_M_S_E18399_F231_scaffold_3 3794 3995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11161923..11164621 /note="source:CACAO_M_S_E18668_F231_scaffold_3 1 2699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11165089..11166401 /note="source:INTACT453_F4_scaffold_9-int 16946 18259" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11166712..11166803 /note="source:CACAO_M_S_E5285_F300_scaffold_1 19273 19366" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11167218..11167644) /note="source:INTACT458_F219_scaffold_7-int 17643 18131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11168013..11168154) /note="source:CACAO_M_E12044_F76_scaffold_2 6080 6222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11168138..11168561 /note="source:CACAO_M_E3935_F390_scaffold_1 15748 16461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11168372..11182630) /note="source:INTACT458_F219_scaffold_7-int 1497 16816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11183093..11184215) /note="source:INTACT458_F219_scaffold_7-int 14983 16101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11184215..11190176 /note="source:INTACT8_F106_scaffold_3-int 2059 8007" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11190175..11190712 /note="source:INTACT132_F12_scaffold_9-int 8904 9439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11192698..11193280) /note="source:CACAO_M_E42514_F40_scaffold_5 10291 10874" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11193232..11193288) /note="source:CACAO_M_E59641_F12_scaffold_9 1719 1775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11193280..11193883) /note="source:CACAO_M_S_E5054_F106_scaffold_1 1 606" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11193884..11198818) /note="source:INTACT595_F266_scaffold_7-int 1008 5977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11199843..11199974 /note="source:CACAO_M_E5326_F22_scaffold_2 17789 17917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11200028..11201751 /note="source:scaffold_9_CACTA_0931 1 1740" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11201734..11204349 /note="source:CACAO_M_S_E119160_F14_scaffold_9 10796 13350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11204344..11205176 /note="source:scaffold_9_CACTA_0931 1733 2551" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11205177..11208713) /note="source:CACAO_M_E3746_F14_scaffold_1 6083 9679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11208714..11212508) /note="source:CACAO_M_E23991_F4_scaffold_4 6130 9874" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11212506..11219043 /note="source:INTACT82_F14_scaffold_11-int 3573 10174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11221030..11221197) /note="source:CACAO_M_E5326_F22_scaffold_2 17763 17928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11221066..11221408 /note="source:CACAO_M_E1841_F5_scaffold_1 3101 3469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11221260..11221409) /note="source:CACAO_M_E13220_F12_scaffold_3 12081 12281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11221410..11222490 /note="source:CACAO_M_S_E17210_F22_scaffold_3 1 1102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11225280..11225375 /note="source:CACAO_M_E5702_F90_scaffold_2 2015 2124" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11225302..11228041) /note="source:CACAO_M_E33282_F13_scaffold_4 6349 9079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11228257..11228310) /note="source:INTACT1638F_F98_scaffold_10-int 2720 2757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11228311..11230966 /note="source:CACAO_M_E13669_F345_scaffold_3 1 2656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11230967..11231328 /note="source:CACAO_M_E85544_F144_scaffold_11 33 396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11231433..11232838 /note="source:CACAO_M_S_E5162_F13_scaffold_1 5327 6738" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11232846..11235539 /locus_tag="TCM_013286" /note="dbxref CacaoGD:Thecc1EG013286" mRNA join(11232846..11233412,11234625..11235539) /locus_tag="TCM_013286" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.36 coverage" CDS 11235090..11235332 /locus_tag="TCM_013286" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21539.1" /translation="MAIKTKTFKRRKFARLALTSTQQSFKFANPQPIPLDSPSRSSPK PLNVYFATEESSPSSDSDYNLLDDAKKREKNRKTRE" mobile_element 11235978..11236210 /note="source:INTACT19F_F94_scaffold_1-int 355 607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11237148..11237343 /note="source:CACAO_M_E69800_F12_scaffold_9 14366 14532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11240998..11243719) /note="source:CACAO_M_S_E14932_F233_scaffold_2 1 2753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11244338..11247288) /note="source:INTACT7_F3_scaffold_8-int 5275 8007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11247289..11249741 /note="source:CACAO_M_S_E7273_F231_scaffold_2 1 2481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11249740..11252070 /note="source:CACAO_M_E59641_F12_scaffold_9 10634 13005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11252053..11253455 /note="source:CACAO_M_E12058_F3_scaffold_2 4071 5458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11253456..11259068) /note="source:CACAO_M_S_E14932_F233_scaffold_2 7327 12965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11255174..11259551 /note="source:CACAO_M_S_E85473_F233_scaffold_7 1800 6110" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11262268..11264891 /note="source:INTACT506_F233_scaffold_3-int 6159 8760" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11265990..11266165 /note="source:scaffold_10_CACTA_0139 3990 4164" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11266167..11269194 /note="source:CACAO_M_E13679_F324_scaffold_3 1 3011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11269195..11269896 /note="source:scaffold_10_CACTA_0139 4178 4885" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11272416..11273642 /note="source:INTACT1818F_F49_scaffold_11-int 625 1846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11273570..11273654) /note="source:CACAO_M_E5899_F5_scaffold_2 24449 24525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11274015..11276389 /note="source:INTACT83_F5_scaffold_9-int 3985 6363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11277461..11278775) /note="source:CACAO_M_S_E84376_F22_scaffold_6 3566 4862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11278775..11280049 /note="source:INTACT83_F5_scaffold_9-int 6359 7623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11280184..11280965) /note="source:CACAO_M_E5899_F5_scaffold_2 21837 22598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11280957..11281203) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6589 6816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11281489..11281865) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6229 6604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11282035..11282340) /note="source:CACAO_M_S_E7818_F60_scaffold_2 19418 19644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11282400..11282479) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3871 3947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11283184..11285249) /note="source:CACAO_M_E43348_F5_scaffold_5 295 2369" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11283741..11285636 /note="source:scaffold_10_CACTA_0139 2978 4877" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11285637..11288777 /note="source:CACAO_M_S_E15657_F60_scaffold_2 562 3704" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11288782..11291698 /note="source:CACAO_M_S_E7105_F60_scaffold_2 3885 6825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11291703..11292332 /note="source:CACAO_M_S_E15657_F60_scaffold_2 6872 7509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11292321..11292331) /note="source:scaffold_10_CACTA_0139 4880 4886" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11292332..11292452) /note="source:INTACT83_F5_scaffold_9-int 12570 12652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11293728..11294515 /note="source:CACAO_M_S_E1495_F60_scaffold_1 1 769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11296705..11297028 /note="source:CACAO_M_E35511_F5_scaffold_5 13170 13494" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11297024..11297073 /note="source:CACAO_M_E13604_F90_scaffold_3 11113 11161" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11297071..11297886 /note="source:CACAO_M_S_E1495_F60_scaffold_1 17039 17855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11297888..11298411 /note="source:INTACT649F_F368_scaffold_5-int 3181 3723" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11298409..11299384 /note="source:INTACT649F_F368_scaffold_5-int 8809 9798" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11299596..11300677) /note="source:scaffold_1_CACTA_0024 3 1080" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11302395..11303605) /note="source:INTACT1625F_F66_scaffold_10-int 813 2032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11302923..11309869 /note="source:INTACT460_F49_scaffold_8-int 1452 13392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11304493..11310719) /note="source:INTACT1625F_F66_scaffold_10-int 968 7232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11310717..11311820 /note="source:INTACT1820F_F94_scaffold_12-int 1240 2347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11311921..11312793) /note="source:CACAO_M_E12221_F121_scaffold_3 5895 6767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11314626..11317566 /note="source:CACAO_M_E58913_F54_scaffold_9 1 2897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11317511..11317583) /note="source:CACAO_on_S_E58_scaffold_2 1924 1995" /mobile_element_type="transposon:TIR/Mutator" mobile_element 11318634..11319577 /note="source:scaffold_1_CACTA_0024 74 1079" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11320553..11322048 /note="source:CACAO_M_S_E18748_F17_scaffold_3 1 1496" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11328025..11330807) /note="source:CACAO_M_E13604_F90_scaffold_3 4226 7011" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11330827..11330909 /note="source:CACAO_M_E72142_F322_scaffold_10 2279 2360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11331756..11333228) /note="source:CACAO_M_S_E84261_F4_scaffold_6 289 1828" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11333229..11333270 /note="source:CACAO_M_E35136_F4_scaffold_5 1488 1527" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11333265..11333779) /note="source:INTACT8_F106_scaffold_3-int 6529 7042" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(11340036..11342060) /locus_tag="TCM_013291" /note="dbxref CacaoGD:Thecc1EG013291" mRNA complement(join(11340036..11340343,11340426..11340561, 11341640..11342060)) /locus_tag="TCM_013291" /product="UPF0497 membrane protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s03720.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03720.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2715t1" CDS complement(join(11340095..11340343,11340426..11340561, 11341640..11341788)) /locus_tag="TCM_013291" /codon_start=1 /product="UPF0497 membrane protein, putative" /protein_id="EOY21540.1" /db_xref="Phytozome:POPTR_0012s03720.1" /translation="MASKAMPIATVLLRIFTILFAAGCVVVLILDKTTDVDGSKVTFK NVIAYRYVLATAVVGAAYSILQLPFAIYYACTEKRLIRGGFLPAFDFYGDKVMAFLLA TGVGAGFLVTVELKEFLGDLFKEFGADLKDSPFESFFNKGYLAVSLLAGAFLCMAVLS VFSSLQRTTISGRGFFR" mobile_element 11342579..11344433 /note="source:CACAO_M_S_E18758_F4_scaffold_3 1 1855" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11345127..11345219 /note="source:CACAO_M_S_E1495_F60_scaffold_1 1868 1957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11345145..11345682) /note="source:CACAO_M_S_E4534_F4_scaffold_1 4216 4768" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11346186..11348900) /note="source:CACAO_M_E48451_F324_scaffold_6 1 2851" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11348901..11348932) /note="source:CACAO_M_E14537_F4_scaffold_3 8078 8109" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11348905..11350865) /note="source:INTACT8_F106_scaffold_3-int 3652 5627" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11350865..11351143 /note="source:CACAO_M_E58819_F24_scaffold_9 3008 3280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11351055..11351568) /note="source:CACAO_M_E13038_F22_scaffold_3 9863 10373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11351201..11353485 /note="source:scaffold_5_CACTA_0585 7216 9517" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11353480..11357130 /note="source:CACAO_M_E9386_F106_scaffold_2 8263 11931" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11357143..11358233) /note="source:INTACT414_F210_scaffold_5-int 1 1094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11358241..11360951) /note="source:CACAO_M_S_E65716_F44_scaffold_5 7129 9808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11360953..11361959 /note="source:scaffold_1_CACTA_0024 6472 7481" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11361960..11364955 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1 2981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11363610..11370225) /note="source:INTACT595_F266_scaffold_7-int 2085 8696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11370226..11371003 /note="source:CACAO_M_E43388_F345_scaffold_5 1 777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11371193..11372506 /note="source:CACAO_M_E14113_F106_scaffold_3 4292 5601" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11372499..11375237) /note="source:INTACT414_F210_scaffold_5-int 3835 6571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11373872..11377233 /note="source:INTACT1373F_F385_scaffold_8-int 18201 21601" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11377105..11378426) /note="source:CACAO_M_S_E84376_F22_scaffold_6 10395 11583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11378425..11381175) /note="source:CACAO_M_E22484_F328_scaffold_3 11522 14255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11381172..11381544 /note="source:scaffold_3_CACTA_0382 10487 10866" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11381498..11381559 /note="source:INTACT406_F208_scaffold_3-int 6459 6523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11381563..11382049) /note="source:CACAO_M_E24592_F195_scaffold_4 19420 19902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11382067..11383387) /note="source:INTACT414_F210_scaffold_5-int 1 1292" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11383657..11383767) /note="source:INTACT597_F267_scaffold_2-int 14105 14193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11383797..11384489 /note="source:CACAO_M_E5899_F5_scaffold_2 19651 20323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11384988..11388796 /note="source:CACAO_M_E23991_F4_scaffold_4 6132 9874" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11388793..11389021 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6388 6617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11388988..11389054 /note="source:CACAO_M_E14113_F106_scaffold_3 4687 4754" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11389016..11389062 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6551 6597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11389057..11389222) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6396 6561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11389223..11390129 /note="source:CACAO_M_E13740_F52_scaffold_3 1 907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11390230..11392196 /note="source:CACAO_M_E13740_F52_scaffold_3 908 2849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11392197..11392328) /note="source:CACAO_M_E5326_F22_scaffold_2 21172 21299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11392608..11393272) /note="source:CACAO_M_E5899_F5_scaffold_2 19652 20323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11393274..11393414 /note="source:CACAO_M_S_E99035_F335_scaffold_9 3579 3719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11393404..11395993) /note="source:CACAO_M_S_E84376_F22_scaffold_6 12542 15102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11394075..11395996) /note="source:CACAO_M_S_E101631_F270_scaffold_9 3955 5872" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11398750..11398868 /note="source:CACAO_M_E5899_F5_scaffold_2 21720 21846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11399540..11399621 /note="source:INTACT224_F176_scaffold_8-int 2472 2554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11399922..11403002) /note="source:scaffold_4_CACTA_0491 1 3099" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11402004..11403660) /note="source:CACAO_M_S_E101631_F270_scaffold_9 15818 17511" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11403686..11403838) /note="source:CACAO_M_S_E101631_F270_scaffold_9 15584 15736" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11404593..11405690) /note="source:CACAO_M_S_E84376_F22_scaffold_6 17823 18843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11406230..11407355 /note="source:CACAO_M_E14113_F106_scaffold_3 18696 19847" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11407519..11407649 /note="source:CACAO_M_E14113_F106_scaffold_3 12066 12211" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11409144..11409749 /note="source:INTACT505_F28_scaffold_3-int 8302 8925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11410790..11411386 /note="source:INTACT505_F28_scaffold_3-int 2101 2729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11412019..11413120 /note="source:INTACT505_F28_scaffold_3-int 3840 4944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11413765..11416384 /note="source:INTACT505_F28_scaffold_3-int 6258 8935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11417469..11418885 /note="source:INTACT505_F28_scaffold_3-int 2166 3583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11419548..11419724) /note="source:CACAO_M_E36_F368_scaffold_1 1 187" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11420526..11422005 /note="source:CACAO_M_S_E18748_F17_scaffold_3 1 1496" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11422885..11424741 /note="source:CACAO_M_S_E18789_F4_scaffold_3 1 1857" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11425239..11425954 /note="source:INTACT570_F260_scaffold_5-int 8577 9291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11428607..11431184) /note="source:CACAO_M_E33933_F9_scaffold_4 22412 25029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11431179..11431861 /note="source:CACAO_M_E4676_F9_scaffold_2 5079 5760" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11432961..11434036 /note="source:CACAO_M_S_E18795_F12_scaffold_3 1 1076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11434281..11434691) /note="source:CACAO_M_S_E99244_F4_scaffold_9 10194 10607" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11434801..11435497 /note="source:CACAO_M_S_E4534_F4_scaffold_1 4059 4768" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11435397..11435517) /note="source:INTACT724_F4_scaffold_8-int 6338 6454" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11435498..11438724) /note="source:CACAO_M_S_E101224_F9_scaffold_9 2994 6231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11438704..11438801) /note="source:scaffold_3_CACTA_0383 4417 4513" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11438726..11440053) /note="source:CACAO_M_E14113_F106_scaffold_3 18694 20011" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11440061..11440174) /note="source:CACAO_M_E23991_F4_scaffold_4 5024 5134" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11440175..11441884) /note="source:CACAO_M_E14404_F79_scaffold_3 1058 2776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11442408..11443480 /note="source:CACAO_M_E22705_F79_scaffold_3 1718 2789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11443481..11443557) /note="source:CACAO_M_E23991_F4_scaffold_4 15999 16076" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11445595..11445820) /note="source:CACAO_M_S_E4534_F4_scaffold_1 3817 4075" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11445838..11445926 /note="source:CACAO_M_S_E99244_F4_scaffold_9 10743 10831" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11446510..11447242) /note="source:INTACT570_F260_scaffold_5-int 8576 9325" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(11449442..11462536) /locus_tag="TCM_013300" /note="dbxref CacaoGD:Thecc1EG013300" mRNA complement(join(11449442..11449581,11449725..11449858, 11450962..11451052,11455739..11455803,11457504..11457563, 11459417..11459491,11459572..11459610,11459706..11459856, 11461286..11461417,11461620..11461769,11461883..11461976, 11462071..11462149,11462246..11462391)) /locus_tag="TCM_013300" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000394001" /inference="similar to AA sequence:Phytozome:GSVIVT01000394001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08321t00001; inference alignment:Newbler:10:TSA:cgbaB_g08321t00001" CDS complement(join(11449814..11449858,11450962..11451052, 11455739..11455803,11457504..11457563,11459417..11459491, 11459572..11459610,11459706..11459856,11461286..11461417, 11461620..11461769,11461883..11461976,11462071..11462149, 11462246..11462311)) /locus_tag="TCM_013300" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21541.1" /db_xref="Phytozome:GSVIVT01000394001" /db_xref="TAIR:AT1G73470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HQ89" /translation="MALHLSALSRFTATTSLSFSSSNMSWPRRSKAIRLVACSNAAVS RYGRVAYEYDPELRIVLELATDAELYELQRILFGPSYFSPLLKSVMNRDDVENVMIEE NVEEREAFIAALESRFLFLAADARSTLRGWRPSYKTVLLSVRKKLNVPCSSKLSTEDL EAEIFLHLLRDYSSDESGTFPGLWENNNISNIQNSLEVGLSQWKVQVIAAAKVGAAGF QSMILKGGGVLTLAKIYQLLTKKLSGKLFLEAANYLMEKEALKKGGQVAAINLESRAA LLAAKQGFAGAASRYVGLRSMMSLLGPLLWGTFLADVVIQMLGTDYARILRAIYAFAQ IRITRTYRLPCEDD" gene 11451426..11452673 /locus_tag="TCM_013301" /note="dbxref CacaoGD:Thecc1EG013301" mRNA 11451426..11452673 /locus_tag="TCM_013301" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage" CDS 11451943..11452167 /locus_tag="TCM_013301" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21543.1" /translation="MMKLCLMLYTWMQPIFCWVDLCYLIMTWNISLSIILYHFIEVRR STLCTLKGESTTEADGSSLGSKVNGFLSRY" mRNA complement(join(<11459587..11459632,11459706..11459856, 11461286..11461417,11461620..11461769,11461883..11461976, 11462071..11462149,11462246..11462536)) /locus_tag="TCM_013300" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000394001" /inference="similar to AA sequence:Phytozome:GSVIVT01000394001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1249t3; inference alignment:Newbler:10:TSA:cgbaB_g08321t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1424t7" CDS complement(join(<11459588..11459632,11459706..11459856, 11461286..11461417,11461620..11461769,11461883..11461976, 11462071..11462149,11462246..11462311)) /locus_tag="TCM_013300" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21542.1" /db_xref="Phytozome:GSVIVT01000394001" /db_xref="TAIR:AT1G73470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HQ89" /translation="MALHLSALSRFTATTSLSFSSSNMSWPRRSKAIRLVACSNAAVS RYGRVAYEYDPELRIVLELATDAELYELQRILFGPSYFSPLLKSVMNRDDVENVMIEE NVEEREAFIAALESRFLFLAADARSTLRGWRPSYKTVLLSVRKKLNVPCSSKLSTEDL EAEIFLHLLRDYSSDESGTFPGLWENNNISNIQNSLEVGLSQWKVQVIAAAKVGAAGF QSMILKLFPFLCLGWWCAYFG" mobile_element 11462744..11463008 /note="source:CACAO_on_E33_A_scaffold_3 877 1143" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(11464828..11465676) /note="source:scaffold_2_CACTA_0276 7341 8190" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11465872..11465966 /note="source:CACAO_M_S_E16386_F9_scaffold_2 2028 2119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11466415..11472746 /note="source:scaffold_3_CACTA_0383 1 6332" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11471903..11473045 /note="source:CACAO_M_E13798_F15_scaffold_3 1 1143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11473046..11476140 /note="source:CACAO_M_E13757_F15_scaffold_3 1 3095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11476141..11477961 /note="source:CACAO_M_E13798_F15_scaffold_3 1139 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11480839..11481456) /note="source:CACAO_M_E1841_F5_scaffold_1 15889 16508" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11481691..11481783 /note="source:scaffold_7_CACTA_0789 14823 14915" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11482269..11482339) /note="source:CACAO_M_E1841_F5_scaffold_1 15162 15232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11482299..11498111 /note="source:scaffold_3_CACTA_0384 1 15813" /mobile_element_type="transposon:TIR/CACTA" gene 11495591..11505073 /locus_tag="TCM_013306" /note="dbxref CacaoGD:Thecc1EG013306" mRNA join(11495591..11495614,11496639..11496711, 11498314..11498389,11499747..11499897,11501333..11501452, 11504372..11505073) /locus_tag="TCM_013306" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040189t1" /inference="similar to AA sequence:Phytozome:Glyma10g22170.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS join(11495601..11495614,11496639..11496711, 11498314..11498389,11499747..11499897,11501333..11501452, 11504372..11504891) /locus_tag="TCM_013306" /note="paralog of Thecc1EG040189t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21544.1" /db_xref="Phytozome:Glyma10g22170.1" /translation="MGPWRVMFQSLPTFVNAVGACVIVAEAARVVSPRIRAKVLHSRI KTRSVVNVRQRKVENRCKSLARFRLTYRVMNDYRDFAVVVTGSKGVPGRDTFEATNIL LKISKLGDGMLIDLCVHSMLFRWATPSVDAHGVNDGTNSHAIKTIVVEESIHVLFDDS NPFLKKENYDDDVGIFQEQVEKLDLNIKRSKVTEEAPQKKQQIKQIIEESEPSYPMVR KEVDERKIISDPNQGVRTRAKVENDYEYFAFISQIEPKNIDEAVDDDYWILAMQEELN QHERCQVWELVLRPSNHPIVGTKWVFRNKMDENGAITRKKS" mobile_element complement(11496931..11499867) /note="source:CACAO_M_E57385_F197_scaffold_9 1804 4720" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11500253..11500301) /note="source:CACAO_M_S_E85177_F5_scaffold_7 22286 22336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11508357..11508377 /note="source:INTACT407F_F356_scaffold_4-int 5148 5174" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11510679..11511497) /note="source:CACAO_M_E42911_F15_scaffold_5 1 818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11511596..11513685) /note="source:CACAO_M_E14113_F106_scaffold_3 10690 12777" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11514875..11514953) /note="source:CACAO_M_E14113_F106_scaffold_3 3235 3309" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11524781..11528945 /note="source:CACAO_M_E69228_F89_scaffold_9 1 4170" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(11527615..11531789) /locus_tag="TCM_013309" /note="dbxref CacaoGD:Thecc1EG013309" mRNA complement(join(11527615..11528243,11531673..11531789)) /locus_tag="TCM_013309" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032544t1" /inference="similar to AA sequence:frave:gene21083" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage" CDS complement(11527821..11528219) /locus_tag="TCM_013309" /note="dbxref frave:gene21083; paralog of Thecc1EG032544t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21545.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AGW4" /translation="MKGVIRFARRGKLNLRYIGPFCIIERIRLVAYRLELPPELDRIH NVFQVSMLKKYVPDPSHILETPLIELQEDLKFEVQPVRILDGKDRVLRNKNIPMVKVL WKNARIEEMTWEVEHQMRNQYPHLFSESSK" mobile_element 11529811..11530795 /note="source:CACAO_M_E24137_F96_scaffold_4 1 977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11531641..11533629) /note="source:INTACT99F_F96_scaffold_2-int 6277 8265" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11533730..11536410) /note="source:INTACT93F_F345_scaffold_2-int 11285 13956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11536515..11538469 /note="source:CACAO_M_E5000_F96_scaffold_2 6143 8136" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11538634..11540790 /note="source:CACAO_M_E13172_F96_scaffold_3 7633 9792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11542117..11543863 /note="source:CACAO_M_E14113_F106_scaffold_3 18679 20422" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11543934..11547297 /note="source:INTACT172_F47_scaffold_2-int 1623 5072" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11547261..11547296) /note="source:INTACT106_F12_scaffold_2-int 1076 1102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11547297..11553783 /note="source:INTACT688_F14_scaffold_11-int 1 6516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11554225..11562011 /note="source:INTACT595_F266_scaffold_7-int 437 8657" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11562239..11562847) /note="source:CACAO_M_E24592_F195_scaffold_4 19420 20036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11562848..11565041 /note="source:CACAO_M_E14113_F106_scaffold_3 18301 19991" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11565112..11565472) /note="source:INTACT649F_F368_scaffold_5-int 14105 14472" /mobile_element_type="retrotransposon:LTR/Copia" gene 11565986..11568228 /locus_tag="TCM_013313" /note="dbxref CacaoGD:Thecc1EG013313" mRNA join(11565986..11566096,11566320..11567058, 11567296..11567541,11567802..11568228) /locus_tag="TCM_013313" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044701t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element 11566215..11566309 /note="source:CACAO_M_E14113_F106_scaffold_3 18694 18789" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(11566395..11567058,11567296..11567541, 11567802..11568097) /locus_tag="TCM_013313" /note="paralog of Thecc1EG044701t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21546.1" /translation="MLEEQQEAIISTAVASWALVGEKADDNTEAGHHLDEGADNYKNL SNQKIEPVGKQIKGDTNVTLHGKEIMPLEESTRSREKVKTSPTRCEEPAVGGSAPHSS NHVLGERATGMREQNISMHDGTPQQKSGKARAGQRLKNNLFVLEGTPRQNAGHASVGQ PLKSDFIEQLAQIKAMRELSLTVHDGMPQQKNGKAGAGQNLKNDLFVQEGMPQQKAGH ASTGNGNNSPTLESTSGKYMYNKEISVVLSFSGTHSLEMEVHPLVRRKRHSDNAASIG KIISLASEEAVEMGENYGISDEDSISINHIQCLHVKLNMPWLEVPLLASFIYAKCTKS ERLILWDCLRNLAINIHTPWIVGGDFNAIIHNGERLNGVVPHAGSMEDFATALLDCGL IDGGYEGNP" mobile_element 11568091..11568165 /note="source:INTACT224_F176_scaffold_8-int 18976 19050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11568153..11570349 /note="source:CACAO_M_S_E51722_F106_scaffold_4 1564 3767" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11570350..11573276 /note="source:CACAO_M_E13783_F7_scaffold_3 1 2927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11573277..11574187) /note="source:INTACT8_F106_scaffold_3-int 3914 4829" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11574187..11578254) /note="source:INTACT8_F106_scaffold_3-int 1 4038" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11578355..11579784 /note="source:CACAO_M_E33933_F9_scaffold_4 23582 25029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11579785..11579947) /note="source:CACAO_M_S_E1820_F12_scaffold_1 842 996" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11580437..11605831 /locus_tag="TCM_013315" /note="dbxref CacaoGD:Thecc1EG013315" mRNA join(11580437..11580445,11587493..11588254, 11588729..11589497,11590541..11591159,11592000..11592171, 11593349..11593709,11595609..11595719,11596970..11597321, 11600180..11600405,11603663..11603884,11604704..11605831) /locus_tag="TCM_013315" /product="UPF0614 protein C14orf102, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012939001" /inference="similar to AA sequence:Phytozome:POPTR_0015s05160.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2805t2" mobile_element complement(11580445..11581522) /note="source:CACAO_M_E5487_F12_scaffold_2 9209 10286" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11582835..11585724 /note="source:CACAO_M_E14113_F106_scaffold_3 7637 10512" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(11587716..11588254,11588729..11589497, 11590541..11591159,11592000..11592171,11593349..11593709, 11595609..11595719,11596970..11597321,11600180..11600405, 11603663..11603884,11604704..11604854) /locus_tag="TCM_013315" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="UPF0614 protein C14orf102, putative isoform 1" /protein_id="EOY21547.1" /db_xref="Phytozome:POPTR_0015s05160.1" /db_xref="TAIR:AT3G17740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LSH4" /translation="MGKMDGNANAMDDQQNPQDPRPSLFPVFPAAGAAATAATASATA TATATTAATTSAPQWLCNPSFTSGLSLINDAASSLPRALNVEEEDEDEDEEGKQQQQQ KNYHSYELLEEEEEDEEDSDSDGEKYDERQKNKKKSKKRNKKRRILKELGDSKSIHAK DYYFDSHPDHDNLAYGSLYRMDVPRYKLYSPQQLSAFLSQGLYRWTQRASTFDKDADI DALDTKLKSAGRYWSPNNAALERHNNLKRLRLFAPKNSSHFAPADFIPLSDSQSSDQL DDEISISNNSIIEESWEDEVLRKTREFNKLTREHPHDEKAWLAFAEFQDKVASMQRQK GVRLQTLEKKISILEKATELNPDNEQLLLCLMKAYQKRDNTDVLVGRWESILSQHSGS YMLWKEFLHVVQGEFSRFKVSDMRKMYAHAIQALSATCSKQFRQIHQTSKCPDSAMVH LELGLVDIFLSLCRFEWQTGHQELATALFQAEIEFSLFCPSLFLNEHSKQRLFKYFWE SDAARVGEEGALGWSMWLEKEEENRQRVMKEEGLDKNDEGGWTGWSEPLSKRKKTSTN IANIANNDVTAEEFDEEIENEDIKQEDDTEALLKQLGIDVDAGASAEVKDTLTWARWS EEESSRDSDQWMPVRAKPGAVTTIHGTPDGEVDGQFMREILYEDISEYLFSLSSAEAR LSLVFQFIDFYGGKISSWVCTNSSSWTEKILGLEELPDCIGENMRRLHDDLTKLQNKS GQFSLEFLWDSAKGILQRTEMMKFLRNAALLCLTAFPRNHILEEATLLAEELFVTKMN SSSCSVTPCQALAKHLLKCDRQDLLLCGIYARREAVYGNMDQARRVFDMALLSLPGLP LDLQANSPLLYLWYAEAELGHNHGYNFESSSRAMHILSCLGSGMTYSPFKCHPSSLQL LRARQGYKEKISALRSKWMRGLVDDQSVALVCAAALFEELTAGWAAGIEIIDDVFTMV LPERRSQSYCLECLFNYYIRMLQRHHGQFTLSKAWESVTHGLQIYPSSPELFNALVEI SCLYTTPNKLRQMFDDYCHKKPSVIVWLFALIFEMSRRGSMHRIHGLFERALANDQLH NSVILWRWYISYEINIVRNPSAARRTFFRAIHACPWSKKLWLDGFLKLNSILTAKELS DLQEVMREKELNMRTDIYEILLQDELV" mRNA join(11587727..11588254,11588729..11589497, 11590541..11591159,11592000..11592171,11593349..11593709, 11595609..11595719,11596970..11597321,11600177..11600405, 11603663..11603884,11604704..11605134) /locus_tag="TCM_013315" /product="UPF0614 protein C14orf102, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012939001" /inference="similar to AA sequence:Phytozome:POPTR_0015s05160.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2805t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2805t2" CDS join(11587746..11588254,11588729..11589497, 11590541..11591159,11592000..11592171,11593349..11593709, 11595609..11595719,11596970..11597321,11600177..11600405, 11603663..11603884,11604704..11604854) /locus_tag="TCM_013315" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="UPF0614 protein C14orf102, putative isoform 2" /protein_id="EOY21548.1" /db_xref="Phytozome:POPTR_0015s05160.1" /db_xref="TAIR:AT3G17740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LSH4" /translation="MDDQQNPQDPRPSLFPVFPAAGAAATAATASATATATATTAATT SAPQWLCNPSFTSGLSLINDAASSLPRALNVEEEDEDEDEEGKQQQQQKNYHSYELLE EEEEDEEDSDSDGEKYDERQKNKKKSKKRNKKRRILKELGDSKSIHAKDYYFDSHPDH DNLAYGSLYRMDVPRYKLYSPQQLSAFLSQGLYRWTQRASTFDKDADIDALDTKLKSA GRYWSPNNAALERHNNLKRLRLFAPKNSSHFAPADFIPLSDSQSSDQLDDEISISNNS IIEESWEDEVLRKTREFNKLTREHPHDEKAWLAFAEFQDKVASMQRQKGVRLQTLEKK ISILEKATELNPDNEQLLLCLMKAYQKRDNTDVLVGRWESILSQHSGSYMLWKEFLHV VQGEFSRFKVSDMRKMYAHAIQALSATCSKQFRQIHQTSKCPDSAMVHLELGLVDIFL SLCRFEWQTGHQELATALFQAEIEFSLFCPSLFLNEHSKQRLFKYFWESDAARVGEEG ALGWSMWLEKEEENRQRVMKEEGLDKNDEGGWTGWSEPLSKRKKTSTNIANIANNDVT AEEFDEEIENEDIKQEDDTEALLKQLGIDVDAGASAEVKDTLTWARWSEEESSRDSDQ WMPVRAKPGAVTTIHGTPDGEVDGQFMREILYEDISEYLFSLSSAEARLSLVFQFIDF YGGKISSWVCTNSSSWTEKILGLEELPDCIGENMRRLHDDLTKLQNKSGQFSLEFLWD SAKGILQRTEMMKFLRNAALLCLTAFPRNHILEEATLLAEELFVTKMNSSSCSVTPCQ ALAKHLLKCDRQDLLLCGIYARREAVYGNMDQARRVFDMALLSLPGLPLDLQANSPLL YLWYAEAELGHNHGYNFESSSRAMHILSCLGSGMTYSPFKCHPSSLQLLRARQGYKEK ISALRSKWMRGLVDDQSVALVCAAALFEELTAGWAAGIEIIDDVFTMVLPAERRSQSY CLECLFNYYIRMLQRHHGQFTLSKAWESVTHGLQIYPSSPELFNALVEISCLYTTPNK LRQMFDDYCHKKPSVIVWLFALIFEMSRRGSMHRIHGLFERALANDQLHNSVILWRWY ISYEINIVRNPSAARRTFFRAIHACPWSKKLWLDGFLKLNSILTAKELSDLQEVMREK ELNMRTDIYEILLQDELV" mRNA join(11587810..11588254,11588729..11589497, 11590541..11591159,11592000..11592171,11593349..11593709, 11595609..11595719,11596970..11597321,11600180..11600405, 11604704..11605069) /locus_tag="TCM_013315" /product="UPF0614 protein C14orf102, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012939001" /inference="similar to AA sequence:Phytozome:POPTR_0015s05160.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1220t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2805t2" mRNA join(<11587810..11588254,11588729..11589497, 11590541..11591159,11592000..11592171,11593349..11593709, 11595609..11595719,11596970..11597004,11597088..>11597112) /locus_tag="TCM_013315" /product="UPF0614 protein C14orf102, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012939001" /inference="similar to AA sequence:Phytozome:GSVIVT01012939001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1220t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2805t2" CDS join(<11587812..11588254,11588729..11589497, 11590541..11591159,11592000..11592171,11593349..11593709, 11595609..11595719,11596970..11597004,11597088..>11597112) /locus_tag="TCM_013315" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="UPF0614 protein C14orf102, putative isoform 4" /protein_id="EOY21550.1" /db_xref="Phytozome:GSVIVT01012939001" /db_xref="TAIR:AT3G17740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LSH4" /translation="AAATAATASATATATATTAATTSAPQWLCNPSFTSGLSLINDAA SSLPRALNVEEEDEDEDEEGKQQQQQKNYHSYELLEEEEEDEEDSDSDGEKYDERQKN KKKSKKRNKKRRILKELGDSKSIHAKDYYFDSHPDHDNLAYGSLYRMDVPRYKLYSPQ QLSAFLSQGLYRWTQRASTFDKDADIDALDTKLKSAGRYWSPNNAALERHNNLKRLRL FAPKNSSHFAPADFIPLSDSQSSDQLDDEISISNNSIIEESWEDEVLRKTREFNKLTR EHPHDEKAWLAFAEFQDKVASMQRQKGVRLQTLEKKISILEKATELNPDNEQLLLCLM KAYQKRDNTDVLVGRWESILSQHSGSYMLWKEFLHVVQGEFSRFKVSDMRKMYAHAIQ ALSATCSKQFRQIHQTSKCPDSAMVHLELGLVDIFLSLCRFEWQTGHQELATALFQAE IEFSLFCPSLFLNEHSKQRLFKYFWESDAARVGEEGALGWSMWLEKEEENRQRVMKEE GLDKNDEGGWTGWSEPLSKRKKTSTNIANIANNDVTAEEFDEEIENEDIKQEDDTEAL LKQLGIDVDAGASAEVKDTLTWARWSEEESSRDSDQWMPVRAKPGAVTTIHGTPDGEV DGQFMREILYEDISEYLFSLSSAEARLSLVFQFIDFYGGKISSWVCTNSSSWTEKILG LEELPDCIGENMRRLHDDLTKLQNKSGQFSLEFLWDSAKGILQRTEMMKFLRNAALLC LTAFPRNHILEEATLLAEELFVTKMNSSSCSVTPCQALAKHLLKCDRQDLLLCGIYAR REAVYGNMDQARRVFDMALLSLPGLPLDLQANSPLLYLWKWYDLQSI" CDS join(11588730..11589497,11590541..11591159, 11592000..11592171,11593349..11593709,11595609..11595719, 11596970..11597321,11600180..11600405,11604704..11604854) /locus_tag="TCM_013315" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="UPF0614 protein C14orf102, putative isoform 3" /protein_id="EOY21549.1" /db_xref="Phytozome:POPTR_0015s05160.1" /db_xref="TAIR:AT3G17740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LSH4" /translation="MDVPRYKLYSPQQLSAFLSQGLYRWTQRASTFDKDADIDALDTK LKSAGRYWSPNNAALERHNNLKRLRLFAPKNSSHFAPADFIPLSDSQSSDQLDDEISI SNNSIIEESWEDEVLRKTREFNKLTREHPHDEKAWLAFAEFQDKVASMQRQKGVRLQT LEKKISILEKATELNPDNEQLLLCLMKAYQKRDNTDVLVGRWESILSQHSGSYMLWKE FLHVVQGEFSRFKVSDMRKMYAHAIQALSATCSKQFRQIHQTSKCPDSAMVHLELGLV DIFLSLCRFEWQTGHQELATALFQAEIEFSLFCPSLFLNEHSKQRLFKYFWESDAARV GEEGALGWSMWLEKEEENRQRVMKEEGLDKNDEGGWTGWSEPLSKRKKTSTNIANIAN NDVTAEEFDEEIENEDIKQEDDTEALLKQLGIDVDAGASAEVKDTLTWARWSEEESSR DSDQWMPVRAKPGAVTTIHGTPDGEVDGQFMREILYEDISEYLFSLSSAEARLSLVFQ FIDFYGGKISSWVCTNSSSWTEKILGLEELPDCIGENMRRLHDDLTKLQNKSGQFSLE FLWDSAKGILQRTEMMKFLRNAALLCLTAFPRNHILEEATLLAEELFVTKMNSSSCSV TPCQALAKHLLKCDRQDLLLCGIYARREAVYGNMDQARRVFDMALLSLPGLPLDLQAN SPLLYLWYAEAELGHNHGYNFESSSRAMHILSCLGSGMTYSPFKCHPSSLQLLRARQG YKEKISALRSKWMRGLVDDQSVALVCAAALFEELTAGWAAGIEIIDDVFTMVLPERRS QSYCLECLFNYYIRMLQRHHGQFTLSKAWESVTHGLQIYPSSPELFNALVEISCLYTT PNKLRQMFDDYCHKSKKLWLDGFLKLNSILTAKELSDLQEVMREKELNMRTDIYEILL QDELV" mobile_element complement(11591178..11591268) /note="source:INTACT296_F13_scaffold_9-int 13156 13249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11601908..11601955 /note="source:INTACT39F_F22_scaffold_1-int 1 47" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11607230..11607539) /note="source:INTACT189_F49_scaffold_5-int 19301 19620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11608306..11608366 /note="source:CACAO_M_E1841_F5_scaffold_1 28129 28189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11608608..11608824) /note="source:INTACT189_F49_scaffold_5-int 18356 18572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11608824..11609130) /note="source:INTACT189_F49_scaffold_5-int 17863 18253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11610299..11612109 /note="source:CACAO_M_S_E38096_F7_scaffold_4 1 1811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11612106..11613791) /note="source:INTACT642F_F365_scaffold_5-int 7550 9217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11614889..11615556) /note="source:INTACT642F_F365_scaffold_5-int 5911 6607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11615557..11616327) /note="source:INTACT454F_F360_scaffold_4-int 7732 8495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11620277..11622694 /note="source:INTACT672_F7_scaffold_8-int 2118 3930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11622086..11623101) /note="source:INTACT715_F7_scaffold_5-int 5468 6462" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11622964..11624669 /note="source:CACAO_M_E48588_F7_scaffold_6 4275 5997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11624670..11627629 /note="source:CACAO_M_E13798_F15_scaffold_3 1 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11627630..11630820 /note="source:CACAO_M_S_E109876_F7_scaffold_9 5847 9043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11630821..11632144 /note="source:CACAO_M_E33870_F15_scaffold_4 1 1322" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11632561..11633914) /note="source:INTACT584_F15_scaffold_3-int 1 1364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11633915..11634775 /note="source:CACAO_M_S_E38096_F7_scaffold_4 2110 2969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11637305..11638772) /note="source:CACAO_M_S_E119191_F3_scaffold_9 223 1688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11638834..11639110) /note="source:CACAO_M_S_E119191_F3_scaffold_9 9989 10266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11639111..11641725 /note="source:CACAO_M_S_E18857_F335_scaffold_3 1 2609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11641726..11647776) /note="source:CACAO_M_S_E16543_F3_scaffold_2 404 6438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11648745..11651831 /note="source:CACAO_M_E58324_F9_scaffold_9 18480 21586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11652880..11654551 /note="source:CACAO_M_E1841_F5_scaffold_1 21827 22974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11655403..11658583 /note="source:CACAO_M_S_E18861_F328_scaffold_3 1 3181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11660605..11661074 /note="source:INTACT607_F3_scaffold_4-int 13396 13859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11668524..11668672 /note="source:CACAO_M_S_E17060_F3_scaffold_3 8408 8570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11668675..11669364 /note="source:INTACT85_F9_scaffold_4-int 1 686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11672308..11674675) /note="source:INTACT497_F83_scaffold_2-int 2532 4904" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11674776..11676599) /note="source:CACAO_M_E58480_F86_scaffold_9 7371 9210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11679741..11680692) /note="source:CACAO_M_E4554_F15_scaffold_2 7432 8384" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11685664..11685997 /note="source:scaffold_3_CACTA_0382 9267 9600" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11685998..11686673) /note="source:INTACT497_F83_scaffold_2-int 5111 5785" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11686674..11687243 /note="source:INTACT280_F60_scaffold_5-int 7478 8044" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11689270..11689689) /note="source:CACAO_M_E53388_F15_scaffold_8 5978 6379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11695618..11696475) /note="source:CACAO_M_E53388_F15_scaffold_8 3277 4133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11696959..11698255 /note="source:CACAO_M_E52278_F17_scaffold_7 1514 2861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11698463..11699827 /note="source:CACAO_M_E52278_F17_scaffold_7 3021 4374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11699863..11700907) /note="source:CACAO_M_E69186_F33_scaffold_9 1898 2941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11700864..11701109 /note="source:INTACT759_F323_scaffold_6-int 7141 7372" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11701216..11702195 /note="source:INTACT759_F323_scaffold_6-int 247 1229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11702312..11707433) /note="source:CACAO_M_S_E122138_F207_scaffold_10 3964 9060" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11711545..11713385) /note="source:CACAO_M_E22497_F33_scaffold_3 19 1858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11712885..11713386 /note="source:CACAO_M_E45017_F15_scaffold_6 7911 8428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11713387..11715016) /note="source:CACAO_M_E59482_F82_scaffold_9 1672 3323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11716650..11716753) /note="source:CACAO_M_S_E5285_F300_scaffold_1 13566 13669" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11716854..11717962) /note="source:CACAO_M_E49857_F85_scaffold_7 19528 20636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11718357..11719139) /note="source:CACAO_M_S_E38262_F319_scaffold_4 7609 8369" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11719489..11723380 /note="source:CACAO_M_E49759_F82_scaffold_7 6018 9959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11723381..11731435) /note="source:INTACT218_F33_scaffold_9-int 1 8024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11731436..11733239 /note="source:CACAO_M_E52278_F17_scaffold_7 10047 11886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11733240..11742650 /note="source:CACAO_M_S_E18878_F86_scaffold_3 1 9411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11742651..11742796 /note="source:CACAO_M_E52278_F17_scaffold_7 11882 12027" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11746445..11752440) /note="source:INTACT215_F33_scaffold_4-int 4981 10994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11759977..11760337 /note="source:CACAO_M_E10476_F82_scaffold_2 1 361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11766686..11767131) /note="source:INTACT95_F143_scaffold_9-int 5454 5899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11767123..11767630) /note="source:CACAO_M_E49759_F82_scaffold_7 9136 9956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11773171..11773569) /note="source:CACAO_M_S_E51867_F7_scaffold_4 9889 10290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11773975..11774165) /note="source:CACAO_M_E5282_F15_scaffold_2 2796 2986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11774166..11775018 /note="source:CACAO_M_E84238_F15_scaffold_10 1 852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11774310..11774365 /note="source:scaffold_3_CACTA_0382 3323 3543" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11778096..11780374 /note="source:CACAO_M_S_E119414_F15_scaffold_9 696 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11780375..11781019) /note="source:CACAO_M_S_E144426_F33_scaffold_10 18244 18884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11781529..11782586 /note="source:CACAO_M_E49857_F85_scaffold_7 4246 5280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11782586..11783170) /note="source:CACAO_M_E42514_F40_scaffold_5 12723 13311" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11783271..11783927 /note="source:CACAO_M_E84238_F15_scaffold_10 591 1247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11785889..11787955) /note="source:CACAO_M_E1572_F15_scaffold_1 1 2082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11790175..11791045) /note="source:INTACT139_F15_scaffold_3-int 2071 2946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11790404..11792445 /note="source:CACAO_M_E9395_F12_scaffold_2 2425 4465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11792446..11794339 /note="source:CACAO_M_E13843_F323_scaffold_3 1 1894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11794684..11795886 /note="source:CACAO_M_E13843_F323_scaffold_3 1895 3097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11795887..11797233) /note="source:INTACT139_F15_scaffold_3-int 8183 9347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11797234..11798410 /note="source:CACAO_M_E84238_F15_scaffold_10 1 1865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11801701..11803664 /note="source:CACAO_M_E84238_F15_scaffold_10 1160 3103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11803665..11803830) /note="source:CACAO_M_E9395_F12_scaffold_2 2068 2233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11803831..11805789 /note="source:CACAO_M_E52654_F15_scaffold_7 893 2853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11806489..11806852 /note="source:CACAO_M_E4668_F85_scaffold_2 2951 3313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11808751..11809290) /note="source:CACAO_M_E42130_F15_scaffold_5 3074 3614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11809291..11809355) /note="source:CACAO_M_E5899_F5_scaffold_2 22624 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11811664..11814131) /note="source:CACAO_M_S_E85177_F5_scaffold_7 17615 20246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11812621..11814133) /note="source:scaffold_4_CACTA_0490 11189 12684" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11814133..11814483 /note="source:INTACT506_F233_scaffold_3-int 9756 10104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11814484..11815107) /note="source:CACAO_M_E4900_F368_scaffold_2 4370 4992" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11815108..11815389) /note="source:CACAO_M_E23938_F233_scaffold_4 2517 2798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11815374..11815389 /note="source:CACAO_M_S_E5285_F300_scaffold_1 6617 6634" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11815390..11818698 /note="source:CACAO_M_E13851_F85_scaffold_3 1 3309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11818699..11827145) /note="source:INTACT506_F233_scaffold_3-int 1364 9821" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11827040..11828567 /note="source:CACAO_M_S_E1323_F233_scaffold_1 1314 2844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11828568..11831708 /note="source:CACAO_M_E14113_F106_scaffold_3 16351 19520" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11831709..11833108 /note="source:CACAO_M_E13855_F15_scaffold_3 1 1400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11834082..11834786 /note="source:CACAO_M_E13855_F15_scaffold_3 1401 2105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11834787..11835698 /note="source:CACAO_M_E14113_F106_scaffold_3 19516 20431" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11835769..11836112 /note="source:INTACT172_F47_scaffold_2-int 1629 1977" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11838105..11840134 /note="source:CACAO_M_E14113_F106_scaffold_3 3 2168" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11841484..11841574) /note="source:CACAO_M_E42514_F40_scaffold_5 3345 3435" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11842165..11842293) /note="source:INTACT37_F117_scaffold_2-int 2383 2511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11842291..11842533 /note="source:CACAO_M_S_E84376_F22_scaffold_6 3565 3805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11842464..11842855) /note="source:CACAO_M_E13038_F22_scaffold_3 9863 10257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11842835..11842902 /note="source:CACAO_M_E58324_F9_scaffold_9 21909 21966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11842903..11845539 /note="source:CACAO_M_E13860_F369_scaffold_3 1 2637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11845540..11845726) /note="source:INTACT37_F117_scaffold_2-int 2067 2255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11845727..11848433 /note="source:CACAO_M_E13862_F345_scaffold_3 1 2707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11848434..11849179 /note="source:scaffold_4_CACTA_0490 11761 12504" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11849576..11850176) /note="source:INTACT39F_F22_scaffold_1-int 2038 2642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11850224..11851778 /note="source:CACAO_M_E11662_F12_scaffold_2 4903 6461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11851879..11857559) /note="source:INTACT37_F117_scaffold_2-int 1723 6862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11856768..11858682 /note="source:CACAO_M_E13038_F22_scaffold_3 10683 12555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11858783..11860469 /note="source:CACAO_M_E13038_F22_scaffold_3 12565 14385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11860469..11860772 /note="source:CACAO_M_E69236_F12_scaffold_9 15258 15553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11860539..11860920) /note="source:INTACT1373F_F385_scaffold_8-int 1 381" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11861236..11862500 /locus_tag="TCM_013332" /note="dbxref CacaoGD:Thecc1EG013332" mRNA join(11861236..11861406,11862112..11862500) /locus_tag="TCM_013332" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001464001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042364t1" /inference="similar to AA sequence:Phytozome:GSVIVT01001464001" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2769t1" mobile_element 11861618..11862177 /note="source:INTACT1373F_F385_scaffold_8-int 15233 15791" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 11862136..11862471 /locus_tag="TCM_013332" /note="paralog of Thecc1EG042364t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21551.1" /db_xref="Phytozome:GSVIVT01001464001" /db_xref="TAIR:AT5G13470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7M5T5" /translation="MEGCLEFPYISLVSGNDHASVVAAVLVKSASRKRDSKGMMGLGS SGGAAATPRAKLPRATLPHSKSVPDTEGGLFVPPQLKGRSNVVIEDISKLFVSKQAIA QPRGPKNQL" mobile_element complement(11862760..11864820) /note="source:CACAO_M_S_E53400_F266_scaffold_5 1 2043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11864950..11865118 /note="source:CACAO_M_E23991_F4_scaffold_4 16027 16184" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11867484..11867739 /note="source:CACAO_M_E23991_F4_scaffold_4 3135 3396" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(11872058..11874022) /locus_tag="TCM_013334" /note="dbxref CacaoGD:Thecc1EG013334" mRNA complement(join(11872058..11872260,11872405..11872596, 11872687..11872849,11872993..11873186,11873254..11873312, 11873916..11874022)) /locus_tag="TCM_013334" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(11872442..11872596,11872687..11872849, 11872993..11873186,11873254..11873293)) /locus_tag="TCM_013334" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21552.1" /translation="MVPIHLETFNSSKGVNFDEEQSCRYGAVWKWQHAHLFSFHVNSI GRFGALFSNCGRYLRLLLTLFHPLFKYGLVVLSWIHTCEGIDFIDNLGWWTKPSILST ERLPLHSHLGVSWQPSTDGDLKFNVDSFTKDSNYIELMAILYTLRLFALSPFVWSNLI IEFDLKNALSWVANESQRPWDSW" mobile_element 11874899..11882798 /note="source:INTACT37_F117_scaffold_2-int 1723 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11882659..11882935) /note="source:CACAO_M_E23991_F4_scaffold_4 8388 8655" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11885771..11886356) /note="source:CACAO_M_E9395_F12_scaffold_2 13781 14109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11886357..11897215 /note="source:INTACT204F_F52_scaffold_3-int 1 10859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11897216..11898329) /note="source:CACAO_M_E13038_F22_scaffold_3 10684 11381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11898504..11898598) /note="source:scaffold_6_CACTA_0700 9998 10096" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11898944..11900418 /note="source:INTACT209_F33_scaffold_5-int 1 1464" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11901718..11902406) /note="source:CACAO_M_E49857_F85_scaffold_7 1 689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11905531..11907035 /note="source:CACAO_M_E11098_F15_scaffold_2 9103 10556" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11911519..11914248 /note="source:CACAO_M_E13877_F73_scaffold_3 1 2730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11917812..11918718 /note="source:scaffold_8_CACTA_0859 16513 17408" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11918716..11919259) /note="source:scaffold_9_CACTA_0941 6337 6879" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11918805..11919409) /note="source:INTACT99_F15_scaffold_5-int 2140 2745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11918970..11919418 /note="source:CACAO_M_E35811_F12_scaffold_5 15105 15554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11920761..11921296 /note="source:CACAO_M_S_E64023_F13_scaffold_5 18893 19443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11923071..11924450) /note="source:scaffold_5_CACTA_0611 2012 3376" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11924450..11925070) /note="source:CACAO_M_S_E64023_F13_scaffold_5 15221 15843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11925072..11926888 /note="source:CACAO_M_E13879_F72_scaffold_3 1 1817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11927287..11928009 /note="source:CACAO_M_E13879_F72_scaffold_3 1818 2540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11928010..11929771) /note="source:CACAO_M_S_E64023_F13_scaffold_5 13478 15224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11931316..11933739 /note="source:INTACT329_F199_scaffold_2-int 3676 6012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11933734..11934850 /note="source:CACAO_M_E52239_F256_scaffold_7 19808 20916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11934852..11937430) /note="source:CACAO_M_S_E17136_F335_scaffold_3 1 2617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11937431..11944467 /note="source:INTACT518_F239_scaffold_2-int 2651 9931" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11944468..11945971 /note="source:CACAO_M_E52239_F256_scaffold_7 20912 22444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11946190..11946710 /note="source:scaffold_4_CACTA_0489 4234 4748" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11946799..11946999) /note="source:INTACT280_F60_scaffold_5-int 10531 10734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11947409..11947835) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5993 6404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11947685..11947860 /note="source:CACAO_M_S_E84376_F22_scaffold_6 10184 10328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11949813..11949858) /note="source:scaffold_1_CACTA_0028 4531 4576" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11950990..11951034) /note="source:scaffold_1_CACTA_0028 2998 3042" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11951254..11951492 /note="source:scaffold_9_CACTA_0930 1288 1525" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11953257..11955886 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17615 20246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11955748..11955913) /note="source:scaffold_2_CACTA_0259 5402 5569" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11956867..11958518) /note="source:CACAO_M_E53135_F19_scaffold_8 4701 6321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11960148..11960424 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5552 5831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11960560..11960797 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6012 6251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11960799..11965418 /note="source:CACAO_M_S_E15657_F60_scaffold_2 3 4623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11965419..11967403) /note="source:CACAO_M_E9719_F369_scaffold_2 617 2690" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11967417..11967764 /note="source:CACAO_M_E24389_F60_scaffold_4 4623 4970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11967755..11967882 /note="source:CACAO_M_E14795_F60_scaffold_3 1586 1713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11967883..11968041 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6245 6404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11968492..11968982 /note="source:CACAO_M_E11656_F17_scaffold_2 3547 3877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11968981..11970112 /note="source:scaffold_1_CACTA_0016 2872 4001" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11970110..11971019) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5986 6941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11972562..11972841) /note="source:CACAO_M_E53135_F19_scaffold_8 2888 3179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11972937..11973083) /note="source:CACAO_M_E53135_F19_scaffold_8 2720 2841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11973118..11973497) /note="source:CACAO_M_E53135_F19_scaffold_8 2427 2812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11975910..11977424 /note="source:CACAO_M_S_E18964_F17_scaffold_3 1 1515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11977945..11978026) /note="source:CACAO_M_S_E109853_F60_scaffold_9 4843 4928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11981799..11984777 /note="source:CACAO_M_E22999_F228_scaffold_4 1 2942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11985385..11987674) /note="source:INTACT609_F90_scaffold_2-int 4112 6536" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11988154..11988539) /note="source:CACAO_M_S_E5046_F335_scaffold_1 20477 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11990512..11992549) /note="source:INTACT518_F239_scaffold_2-int 6890 8159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11992547..12000250 /note="source:CACAO_M_E13905_F245_scaffold_3 1 13002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11998885..12000526) /note="source:CACAO_M_S_E4266_F12_scaffold_1 1 1643" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12000472..12000535 /note="source:CACAO_M_S_E32590_F18_scaffold_4 10451 10515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12001064..12003715) /note="source:CACAO_M_S_E19828_F19_scaffold_3 9197 11399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12003716..12004325) /note="source:INTACT597_F267_scaffold_2-int 11848 12456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12004531..12006304) /note="source:INTACT224_F176_scaffold_8-int 14558 15248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12006305..12008209 /note="source:CACAO_M_E14450_F156_scaffold_3 1 1907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12008565..12009001 /note="source:CACAO_M_S_E15347_F33_scaffold_2 8074 8510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12008975..12009084 /note="source:CACAO_M_E33787_F13_scaffold_4 217 337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12009015..12009163 /note="source:CACAO_M_E36038_F90_scaffold_5 13203 13354" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12009085..12009144) /note="source:CACAO_M_S_E99214_F90_scaffold_9 763 999" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12009146..12011753) /note="source:CACAO_M_E43348_F5_scaffold_5 18073 20653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12011739..12011933) /note="source:CACAO_Mariner_E229_scaffold_9 1262 1458" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 12011766..12013026 /note="source:CACAO_M_E3884_F22_scaffold_1 11882 13130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12013026..12014467) /note="source:INTACT224_F176_scaffold_8-int 2831 4044" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12013867..12014585 /note="source:INTACT563_F255_scaffold_10-int 16531 17247" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12014628..12016883) /note="source:CACAO_M_E35511_F5_scaffold_5 2526 3264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12017056..12017180 /note="source:INTACT146F_F14_scaffold_2-int 14334 14464" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12017251..12019872 /note="source:CACAO_M_E52239_F256_scaffold_7 19813 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12020268..12020499 /note="source:INTACT39F_F22_scaffold_1-int 5664 5897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12020500..12021331 /note="source:CACAO_M_E33933_F9_scaffold_4 1 815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12021395..12021856) /note="source:CACAO_M_E33282_F13_scaffold_4 10299 10761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12021531..12021986 /note="source:CACAO_M_S_E7818_F60_scaffold_2 20520 20959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12022466..12029030 /note="source:CACAO_M_E35511_F5_scaffold_5 2259 8742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12024747..12029803) /note="source:INTACT41F_F338_scaffold_1-int 2570 7628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12029804..12039044 /note="source:CACAO_M_S_E7632_F12_scaffold_2 1 9323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12039045..12044273) /note="source:INTACT506_F233_scaffold_3-int 4891 10104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12040260..12045926 /note="source:CACAO_M_S_E19828_F19_scaffold_3 2261 7949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12044715..12046389) /note="source:INTACT506_F233_scaffold_3-int 1474 3301" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12046377..12047028) /note="source:INTACT1421F_F389_scaffold_9-int 8463 9115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12047043..12047805 /note="source:CACAO_M_E43590_F7_scaffold_5 5 768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12047806..12050728 /note="source:CACAO_M_S_E144397_F164_scaffold_10 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12050729..12052095) /note="source:INTACT41F_F338_scaffold_1-int 860 2231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12052096..12054832 /note="source:CACAO_M_E13933_F345_scaffold_3 1 2737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12054833..12057067 /note="source:scaffold_4_CACTA_0494 5277 7499" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12057078..12059917 /note="source:CACAO_M_S_E65805_F7_scaffold_5 3432 6262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12059923..12060718) /note="source:CACAO_M_S_E7818_F60_scaffold_2 7829 8615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12060714..12060854) /note="source:CACAO_M_E69217_F98_scaffold_9 2247 2386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12063964..12067296) /note="source:CACAO_M_E45504_F98_scaffold_6 4802 8137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12069141..12069494) /note="source:CACAO_M_E69217_F98_scaffold_9 7135 7488" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12070969..12083860) /locus_tag="TCM_013348" /note="dbxref CacaoGD:Thecc1EG013348" mRNA complement(join(12070969..12071003,12080882..12080997, 12082871..12082955,12083507..12083860)) /locus_tag="TCM_013348" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017962t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(12071005..12072043) /note="source:CACAO_M_E35511_F5_scaffold_5 17629 18679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12072029..12072740) /note="source:CACAO_M_E35511_F5_scaffold_5 17645 18072" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12072721..12075059) /note="source:INTACT498_F231_scaffold_5-int 1 2022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12078043..12079381 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5809 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12079740..12080465 /note="source:CACAO_M_E35511_F5_scaffold_5 12934 13656" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(12080913..12080997,12082871..12082955, 12083507..12083744)) /locus_tag="TCM_013348" /note="paralog of Thecc1EG017962t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21553.1" /translation="MAVSTMLADIRESSGRYHAHPGVSLYRITCSLDTYTYHKSWPPP CLTAHRRPKGSLARAHSCTRVTINRSDSQPTLDKVGRFVAIDSGAYLAISTCRSLVTS PGTPPRGVTRSESLRDAITYVATNQNAGAIRLS" mobile_element complement(12081321..12081875) /note="source:CACAO_M_E1841_F5_scaffold_1 25949 26504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12084623..12085343 /note="source:CACAO_M_S_E5046_F335_scaffold_1 2547 3269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12085344..12086065) /note="source:CACAO_M_E58324_F9_scaffold_9 27621 28352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12086065..12086849) /note="source:CACAO_M_E58324_F9_scaffold_9 1 801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12086853..12087792) /note="source:CACAO_M_E9677_F7_scaffold_2 5243 6173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12088168..12088504 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15310 15859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12088505..12088735 /note="source:scaffold_3_CACTA_0388 1537 1766" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12088731..12089542 /note="source:scaffold_3_CACTA_0388 4430 5242" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12088736..12088857 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15860 16061" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12089537..12089992 /note="source:scaffold_3_CACTA_0388 7999 8453" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12089613..12090368) /note="source:CACAO_M_E1841_F5_scaffold_1 15889 16662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12090445..12090585) /note="source:CACAO_M_E5899_F5_scaffold_2 21704 21846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12090625..12092948) /note="source:CACAO_M_E9677_F7_scaffold_2 10468 12852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12092949..12095805 /note="source:CACAO_M_E13946_F322_scaffold_3 1 2846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12095806..12096402 /note="source:CACAO_M_S_E64440_F7_scaffold_5 2363 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12099613..12102568 /note="source:CACAO_M_E13947_F15_scaffold_3 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12102569..12102602 /note="source:scaffold_8_CACTA_0859 12106 12143" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12107130..12107828) /note="source:scaffold_4_CACTA_0491 2151 2845" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12108039..12108144) /note="source:scaffold_8_CACTA_0860 11042 11156" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12108860..12110041) /note="source:scaffold_8_CACTA_0860 9474 10130" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12112680..12113029 /note="source:CACAO_M_E52662_F215_scaffold_7 13720 14065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12113030..12114181 /note="source:CACAO_M_E84368_F4_scaffold_10 4507 5672" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12114182..12114879) /note="source:CACAO_M_E84427_F245_scaffold_10 2289 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12114861..12117816) /note="source:CACAO_M_S_E34046_F60_scaffold_4 3497 6463" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12117805..12120095) /note="source:CACAO_M_E42108_F245_scaffold_5 1 2291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12120096..12120566 /note="source:CACAO_M_E84368_F4_scaffold_10 5668 6138" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12120564..12120654) /note="source:INTACT280_F60_scaffold_5-int 7700 7772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12121364..12121787) /note="source:INTACT103_F9_scaffold_4-int 19326 19741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12121368..12121700 /note="source:INTACT222_F33_scaffold_7-int 4872 5202" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12122833..12122912) /note="source:INTACT904F_F49_scaffold_6-int 13697 13769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12123180..12123330) /note="source:INTACT695_F301_scaffold_5-int 4328 4476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12131077..12132389) /note="source:CACAO_M_E43348_F5_scaffold_5 18072 19365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12135989..12138935 /note="source:CACAO_M_E13957_F172_scaffold_3 1 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12138936..12139298) /note="source:INTACT409F_F47_scaffold_4-int 17308 17634" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12139392..12139460 /note="source:scaffold_4_CACTA_0491 1203 1271" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12140001..12140517) /note="source:CACAO_M_S_E34046_F60_scaffold_4 2856 3342" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12140843..12143770 /note="source:CACAO_M_E13958_F7_scaffold_3 1 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12145373..12145785 /note="source:INTACT33_F7_scaffold_5-int 9572 9981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12146452..12146541 /note="source:INTACT409F_F47_scaffold_4-int 17255 17344" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12146542..12153458) /note="source:INTACT439_F42_scaffold_7-int 3214 10139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12153559..12154103) /note="source:CACAO_M_E58440_F42_scaffold_9 2642 3185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12154204..12154600) /note="source:CACAO_M_E22722_F42_scaffold_3 9439 9835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12156159..12156938) /note="source:CACAO_M_E22859_F42_scaffold_3 1 781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12156939..12157302 /note="source:INTACT409F_F47_scaffold_4-int 17340 17730" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12161664..12164477 /note="source:CACAO_M_S_E19044_F233_scaffold_3 1 2814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12165501..12166254 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3582 4349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12166253..12168929 /note="source:INTACT24F_F12_scaffold_1-int 1251 3944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12168913..12169180 /note="source:CACAO_M_S_E83372_F14_scaffold_6 4336 4606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12170772..12170909) /note="source:scaffold_2_CACTA_0262 669 780" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12171363..12171438 /note="source:scaffold_2_CACTA_0262 900 980" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12174561..12175361 /note="source:INTACT135F_F90_scaffold_2-int 13186 13998" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(12177129..12179078) /locus_tag="TCM_013357" /note="dbxref CacaoGD:Thecc1EG013357" mRNA complement(join(12177129..12177696,12177848..12178300, 12178562..12179078)) /locus_tag="TCM_013357" /product="MYB transcription factor isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s03650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035359t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03650.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6045t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6045t3" mRNA complement(join(12177129..12177696,12177848..12178325, 12178562..>12178587)) /locus_tag="TCM_013357" /product="Myb domain protein 52 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s03650.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03650.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6045t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6045t3" CDS complement(join(12177518..12177696,12177848..12178300, 12178562..12178676)) /locus_tag="TCM_013357" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG035359t1" /codon_start=1 /product="MYB transcription factor isoform 1" /protein_id="EOY21554.1" /db_xref="Phytozome:POPTR_0012s03650.1" /db_xref="TAIR:AT1G17950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4W4" /translation="MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRL RWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMA RRCRERSRLYAKRSAAHHSTTLPDHRKPSPKPLHQAVHSESEITTSFAPLFDKYKQGY PYPYPFPPHFFKEFYARDWNPTHCITITEDKNRPTEFYDFLQVNTDSNKSEVTDNTRR DEEEVDQEAMEQQSKAGASFIDFLSIGSSS" CDS complement(join(12177518..12177696,12177848..12178325, 12178562..>12178585)) /locus_tag="TCM_013357" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Myb domain protein 52 isoform 2" /protein_id="EOY21555.1" /db_xref="Phytozome:POPTR_0012s03650.1" /db_xref="TAIR:AT1G17950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4W4" /translation="PKSFKADQRRHVLIESGKSCRLRWFNQLDPRINRSPFTEEEEER LLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRSAAHHSTTL PDHRKPSPKPLHQAVHSESEITTSFAPLFDKYKQGYPYPYPFPPHFFKEFYARDWNPT HCITITEDKNRPTEFYDFLQVNTDSNKSEVTDNTRRDEEEVDQEAMEQQSKAGASFID FLSIGSSS" mobile_element 12182864..12182962 /note="source:scaffold_2_CACTA_0262 5266 5366" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12184317..12193846 /note="source:CACAO_M_S_E52257_F12_scaffold_5 643 10158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12198994..12201245 /note="source:CACAO_M_E70339_F318_scaffold_10 1 2240" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12200783..12202014) /note="source:CACAO_M_E23897_F318_scaffold_4 1 1207" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12210167..>12219302) /locus_tag="TCM_013360" /note="dbxref CacaoGD:Thecc1EG013360" mRNA complement(join(12210167..12211182,12212026..12212147, 12212570..12212680,12212795..12212909,12213167..12213266, 12213349..12213443,12213547..12213677,12213798..12213878, 12213994..12214098,12217967..12218044,12218186..12218317, 12218447..12218597,12218683..12218866,12218988..12219302)) /locus_tag="TCM_013360" /product="DNA polymerase epsilon subunit B2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008158001" /inference="similar to AA sequence:Phytozome:GSVIVT01008158001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc881t9; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc881t9" CDS complement(join(12210960..12211182,12212026..12212147, 12212570..12212680,12212795..12212909,12213167..12213266, 12213349..12213443,12213547..12213677,12213798..12213878, 12213994..12214098,12217967..12218044,12218186..12218317, 12218447..12218597,12218683..12218866,12218988..12219150)) /locus_tag="TCM_013360" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA polymerase epsilon subunit B2 isoform 1" /protein_id="EOY21556.1" /db_xref="Phytozome:GSVIVT01008158001" /db_xref="TAIR:AT5G22110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56XM7" /translation="MSGQTRKMIQKKLKIRGYSLKMDGLEEILSFVDRFQDAQDEAID LLLDQLDHESLKSSIIDKGAVHRVISLLLEAEAAEEECPTSSTSLSHSSIRVVDAFLV PKFRYDPIKKHFFQHAGSLPIHGDASAKPALYRDRFLLLFQRVSRDQHFIKPAFDTDE TSQSCQLSPIQSLVGQRGKRWVMGVISQLEDGHFYLEDLTAAVEIDFSKAKITTGFFM ENTVIVAEGEMLSEGIFQVITCGFPPLEDRDKSFKILAGHDFFGGGTLTKEETLRLAD LEKRAVNDMFVILSDIWLDNEEVMEKLETVLNGFESVEIVPSLFVLMGNFCSHPCNLS FHSFSSLRLQFGKLGRMIEAHPRLKEQSRFLFIPGPDDAGPSTALPRCALPKYLTEEL QKHVPNAIFSTNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSTEETDDPFEHLVATI THQSHLCPLPLFVQPIIWNYDHCLHLYPTPHTIILGDRSEQKAFKYTGITCFNPGSFS DDSTFVAYRPCTQEVLQTPLNSFFISLVFSSASLLPLTRVRSCCVLCDYPFISTISNR LDSLYSLSRTQSFSKRKKIVLPELLEKKVY" mRNA complement(join(<12212880..12212909,12213173..12213266, 12213349..12213443,12213547..12213677,12213798..12213878, 12213994..12214098,12217967..12218044,12218186..12218317, 12218447..12218597,12218683..12218866, 12218988..>12219302)) /locus_tag="TCM_013360" /product="DNA polymerase epsilon subunit B2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008158001" /inference="similar to AA sequence:Phytozome:GSVIVT01008158001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc864t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc881t9" CDS complement(join(<12212882..12212909,12213173..12213266, 12213349..12213443,12213547..12213677,12213798..12213878, 12213994..12214098,12217967..12218044,12218186..12218317, 12218447..12218597,12218683..12218866, 12218988..>12219300)) /locus_tag="TCM_013360" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA polymerase epsilon subunit B2 isoform 2" /protein_id="EOY21557.1" /db_xref="Phytozome:GSVIVT01008158001" /db_xref="TAIR:AT5G22110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56XM7" /translation="KVKIYPPKSAAKVQNPPPFAKIPFPRQSEKSVRKNKTVKPETKK KKRGGKMSGQTRKMIQKKLKIRGYSLKMDGLEEILSFVDRFQDAQDEAIDLLLDQLDH ESLKSSIIDKGAVHRVISLLLEAEAAEEECPTSSTSLSHSSIRVVDAFLVPKFRYDPI KKHFFQHAGSLPIHGDASAKPALYRDRFLLLFQRVSRDQHFIKPAFDTDETSQSCQLS PIQSLVGQRGKRWVMGVISQLEDGHFYLEDLTAAVEIDFSKAKITTGFFMENTVIVAE GEMLSEGIFQVITCGFPPLEDRDKSFKILAGHDFFGGGTLTKEETLRLADLEKRAVND MFVILSDIWLDNEEVMEKLETVLNGFESVEIVPSLFVLMGNFCSHPCNLSFHSFSSLR LQFGKLGRMIEAHPRLKEQSRFLFIPGPDDAGPSTALPRCALPKYLTEELQKHVPNAI FSTNPIKFYTQEIV" mobile_element complement(12221621..12221918) /note="source:scaffold_2_CACTA_0256 17030 17564" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12221903..12222101) /note="source:scaffold_2_CACTA_0256 17078 17289" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12223022..12223166) /note="source:scaffold_2_CACTA_0256 17375 17521" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12225176..12235349) /note="source:CACAO_M_E4704_F345_scaffold_2 255 10523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12235355..12243726) /note="source:CACAO_M_S_E52921_F60_scaffold_5 8148 16526" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 12246082..12260362 /locus_tag="TCM_013364" /note="dbxref CacaoGD:Thecc1EG013364" mRNA join(12246082..12246485,12247656..12248183, 12260289..12260362) /locus_tag="TCM_013364" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010066t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(12246268..12246485,12247656..12248160) /locus_tag="TCM_013364" /note="paralog of Thecc1EG010066t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21558.1" /translation="MKVNEMQMKCKWSEMYMKRSAIMTSHLGCTWYIVGNVICWECDY WKYNFAAFGIIRESDDCRECWFVSILLGMKYYENLVGIFYFNATQKYAKSKTGQLVNH DDTFVTHVMGLRILVTCDLIERVLHLTSFREDHRYVFDNGDLQSVFIHLPPNDRGNTN CTRLCFFDQVLHLIITHTIRLHESNYSVVTTEDLWFLINIKLNYHIDLAKFIMDDMLR TILVKVQVQPCVQPLEAKHLKI" mobile_element 12248102..12248152 /note="source:CACAO_M_E35511_F5_scaffold_5 10312 10362" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12248155..12249585 /note="source:INTACT591_F264_scaffold_1-int 19836 21282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12250165..12250290) /note="source:CACAO_M_E43672_F60_scaffold_5 17396 17521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12250332..12251888) /note="source:CACAO_M_S_E7818_F60_scaffold_2 21002 22518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12252136..12252767 /note="source:INTACT189_F49_scaffold_5-int 17856 18490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12252768..12252866) /note="source:CACAO_M_E42589_F12_scaffold_5 12926 13029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12254220..12254319 /note="source:CACAO_M_E42395_F3_scaffold_5 4281 4380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12255600..12255702 /note="source:CACAO_M_E42395_F3_scaffold_5 18823 18918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12256265..12256316) /note="source:CACAO_M_S_E7818_F60_scaffold_2 1689 1743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12256291..12256341 /note="source:CACAO_M_E35511_F5_scaffold_5 8742 8791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12256341..12256998) /note="source:CACAO_M_E35511_F5_scaffold_5 9947 10600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12257194..12257569 /note="source:CACAO_M_E1841_F5_scaffold_1 8386 8764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12257570..12260487 /note="source:CACAO_M_S_E19058_F341_scaffold_3 1 2909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12260488..12262044 /note="source:INTACT280_F60_scaffold_5-int 8946 10498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12262023..12262061 /note="source:CACAO_M_E1841_F5_scaffold_1 15772 15810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12262060..12262805) /note="source:CACAO_M_E42395_F3_scaffold_5 41 787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12263102..12264134 /note="source:CACAO_M_E58324_F9_scaffold_9 13 883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12264787..12266234) /note="source:CACAO_M_E11098_F15_scaffold_2 6239 7693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12266587..12272027 /note="source:INTACT224_F176_scaffold_8-int 4171 9408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12272010..12272103) /note="source:CACAO_M_E24598_F96_scaffold_4 2700 2796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12272026..12272893 /note="source:CACAO_M_E1841_F5_scaffold_1 9631 10428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12273060..12274287) /note="source:CACAO_M_S_E5046_F335_scaffold_1 18259 19487" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12273810..12274385 /note="source:CACAO_M_E1841_F5_scaffold_1 25205 25803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12274384..12276906 /note="source:INTACT224_F176_scaffold_8-int 9403 11929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12276931..12283448 /note="source:INTACT160_F4_scaffold_7-int 7619 14933" /mobile_element_type="retrotransposon:LTR/Copia" gene 12277647..12280134 /locus_tag="TCM_013367" /note="dbxref CacaoGD:Thecc1EG013367" mRNA join(12277647..12277677,12278014..12278100, 12278161..12278375,12278454..12278553,12278677..12278816, 12278875..12278956,12279031..12279340,12279461..12280134) /locus_tag="TCM_013367" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027849t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage" CDS join(12278049..12278100,12278161..12278375, 12278454..12278553,12278677..12278816,12278875..12278956, 12279031..12279340,12279461..12279884) /locus_tag="TCM_013367" /note="paralog of Thecc1EG027849t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21559.1" /translation="MTAAWIMDRRLHELPNLSTEMPPKTRAALRGMRGFNALDDTTEG PRASFSRSSGRGGPKGRIAGPQSSQSSSERRIGTSFRDTRGDYLEGVYQPNETMGSSF EDSDYQPYEKIDRGNVMVTLVKLIGFRLTEVVQIWFTTLKHYRSLGFAPFTREEFTQA FMDRFLPESCQIMTSSLLSCRVMLRIWFRLKGRGSRVDAIRKIEVGRKEVGMEKKRSK RNRGEGSSRYRDPSKGKDVNIAGQPGRRDGNLLRGSAFFSPPNQRRNFQFHSPPRSSD FSGINYKRAMSSGMTNSNLRQSGQHNQEMARGSMRPNFATASTRNVKRDKGKRVAFSS QGRSVRPTQQGASRRGQARVFALTPQDAHVSNVVVTGNLFICGYEASILFDPRSTHSF VSSNFIPKLGKHYEYMDEPLVVTTLLEESYVMEYVFRSCVVQIKDRDT" mobile_element 12283449..12286453 /note="source:CACAO_M_S_E4328_F7_scaffold_1 1 3002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12286454..12288320 /note="source:INTACT160_F4_scaffold_7-int 13114 14931" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12288318..12289791 /note="source:scaffold_2_CACTA_0263 3135 4628" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12291557..12292543 /note="source:CACAO_M_E33213_F12_scaffold_4 8120 9074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12292544..12295113 /note="source:CACAO_M_S_E19071_F344_scaffold_3 1 2570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12295114..12296656) /note="source:CACAO_M_E47412_F344_scaffold_6 1 1580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12296718..12296802) /note="source:CACAO_M_E33213_F12_scaffold_4 15578 15658" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12298067..12305337) /locus_tag="TCM_013372" /note="dbxref CacaoGD:Thecc1EG013372" mRNA complement(join(12298067..12298654,12299876..12300178, 12305326..12305337)) /locus_tag="TCM_013372" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(12298321..12298542) /locus_tag="TCM_013372" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21560.1" /translation="MRGICPSFSRSFQQTKGLDAATTRRQHHGTQKENLKKIIPTSRH PRERVVALTCQKRVLLHSNFYFDTNSSSI" mobile_element 12301594..12301743 /note="source:CACAO_M_E58601_F7_scaffold_9 4150 4313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12304207..12304771) /note="source:CACAO_M_E33213_F12_scaffold_4 10141 10703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12304798..12307165) /note="source:scaffold_2_CACTA_0263 2444 4816" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12307166..12308286) /note="source:scaffold_2_CACTA_0263 403 1632" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12308096..12308918 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18937 19765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12308884..12309529 /note="source:scaffold_2_CACTA_0263 3912 4562" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12309525..12309557 /note="source:scaffold_2_CACTA_0260 504 536" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12310360..12311675) /note="source:CACAO_M_E9677_F7_scaffold_2 5147 6454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12312759..12313291 /note="source:CACAO_M_S_E4863_F51_scaffold_1 4777 5303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12314190..12317330) /note="source:scaffold_2_CACTA_0263 2002 5242" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12317226..12317361) /note="source:CACAO_M_E86305_F7_scaffold_15 6198 6328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12321747..12322427 /note="source:CACAO_M_E70904_F7_scaffold_10 1 683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12322428..12325004 /note="source:CACAO_M_S_E146143_F231_scaffold_11 1 2585" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12325005..12325047) /note="source:CACAO_M_E86305_F7_scaffold_15 6214 6256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12325037..12327343 /note="source:CACAO_M_E9677_F7_scaffold_2 10542 12852" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12329602..12335514) /locus_tag="TCM_013376" /note="dbxref CacaoGD:Thecc1EG013376" mRNA complement(join(12329602..12329632,12331404..12331957, 12335463..12335514)) /locus_tag="TCM_013376" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024271t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(12331406..12331822) /locus_tag="TCM_013376" /note="paralog of Thecc1EG024271t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21561.1" /translation="MNGSIDFDEVLGSISILGTEWKVHRGVPILFKANAMDSDYKVWY HFLTTNMRLVKHLSDVTKDRTVLLYSIATKKSIDIGQLIFNNIIMLAQSPHDGLWYPS LIIAFYCQARVVWSTNEELLHPKIPLDGGIINRFYM" mobile_element 12332050..12334455 /note="source:CACAO_M_S_E19828_F19_scaffold_3 8992 11399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12333008..12334678) /note="source:CACAO_M_E33213_F12_scaffold_4 8120 9772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12335151..12336290 /note="source:scaffold_8_CACTA_0859 16514 17654" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12338892..12340104) /note="source:CACAO_M_E3248_F5_scaffold_1 3299 4497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12340150..12343117 /note="source:CACAO_M_E14007_F15_scaffold_3 1 2968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12343486..12344381 /note="source:CACAO_M_E5899_F5_scaffold_2 21827 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12347130..12347853 /note="source:CACAO_M_E33213_F12_scaffold_4 8120 8822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12347847..12347961 /note="source:INTACT88_F12_scaffold_4-int 12315 12428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12347923..12348226) /note="source:INTACT39F_F22_scaffold_1-int 7490 7785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12347958..12348486 /note="source:CACAO_M_E52239_F256_scaffold_7 20574 21095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12348454..12349434) /note="source:CACAO_M_E870_F22_scaffold_1 1380 2356" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12349778..12350093) /note="source:INTACT296_F13_scaffold_9-int 14132 14447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12349981..12350111) /note="source:scaffold_9_CACTA_0931 18206 18333" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12350096..12350703 /note="source:CACAO_M_S_E119160_F14_scaffold_9 12744 13348" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12352819..12352989) /note="source:CACAO_M_S_E31635_F14_scaffold_3 4532 4702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12355521..12357295 /note="source:INTACT85F_F12_scaffold_2-int 8772 10536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12362926..12363772) /note="source:CACAO_M_E5899_F5_scaffold_2 21869 22690" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12365367..12365450) /note="source:INTACT170_F12_scaffold_5-int 1170 1253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12366729..12368122 /note="source:CACAO_M_E33282_F13_scaffold_4 6355 7748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12368123..12378278) /note="source:CACAO_M_E86184_F12_scaffold_13 1 10160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12378279..12379675 /note="source:CACAO_M_E33282_F13_scaffold_4 11429 12675" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12379933..12403307) /locus_tag="TCM_013380" /note="dbxref CacaoGD:Thecc1EG013380" mRNA complement(join(12379933..12379959,12402411..12403307)) /locus_tag="TCM_013380" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element 12380007..12380854 /note="source:CACAO_M_E870_F22_scaffold_1 1380 2219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12380819..12381914) /note="source:CACAO_M_E12463_F12_scaffold_3 2934 4030" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12388984..12400524) /locus_tag="TCM_013381" /note="dbxref CacaoGD:Thecc1EG013381" mRNA complement(join(12388984..12389157,12398646..12399373, 12399670..12399849,12400353..12400524)) /locus_tag="TCM_013381" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027898t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage" CDS complement(join(12389085..12389157,12398646..12399373, 12399670..12399843)) /locus_tag="TCM_013381" /note="paralog of Thecc1EG027898t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21563.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLE9" /translation="MPPKTRAASRRAGEQDVPIEMADRPRASTQRGRGRRGRVTRPVG LDTPVSRQEEGSPQMEKICKALGCSSVRSVELAAFQLEDVAQEWYSSLCRGRSTNATP LAWSEFSVAFLDRFLPLSVRNARAREFETLVQTSSMTVSEYDIKFTQLARYAPYLVST EEMKIQRFVDGLVEPLFRAVASRDFTTYSAAVDRAQRIEMRTNESRAARDRAKRGKTE GYQGRRDFSSGGSSSSRQGPQRDSRLPQQGSDAPGANIRVGQRTFNSRRQQDSRQSSQ VIRSCDTCGRRHSGRCFLTTKTCYGLTWVKKVTPIDTRVLVMALGFGL" mobile_element complement(12390304..12390795) /note="source:CACAO_M_S_E99574_F14_scaffold_9 21396 21887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12398634..12398980) /note="source:CACAO_M_S_E50960_F369_scaffold_4 3831 4177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12400518..12401043) /note="source:CACAO_M_S_E101664_F289_scaffold_9 1 529" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(12402792..12403085) /locus_tag="TCM_013380" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21562.1" /translation="MHGGQLTENRITLKAKPLMEKQIMHMPNQREENRSRIMPEQLVE KQIIDQRNLSMSVSLGVISTDGIKHCRWESQARLVPPSLFTTILVGTQIVTRG" mobile_element 12403358..12406302 /note="source:CACAO_M_E14020_F15_scaffold_3 1 2945" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12406729..12407442 /note="source:CACAO_M_S_E101664_F289_scaffold_9 1 714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12407443..12408160 /note="source:CACAO_M_S_E85005_F42_scaffold_7 1 718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12408261..12410614 /note="source:CACAO_M_S_E13904_F42_scaffold_2 744 3097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12410615..12412678) /note="source:CACAO_M_E84309_F333_scaffold_10 1 2067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12412679..12412713 /note="source:CACAO_M_S_E50960_F369_scaffold_4 2790 2822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12414797..12415618) /note="source:CACAO_M_S_E89272_F5_scaffold_8 14720 15535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12415616..12416670) /note="source:CACAO_M_S_E89272_F5_scaffold_8 7159 8219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12416736..12417174) /note="source:INTACT280_F60_scaffold_5-int 13870 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12417916..12418894) /locus_tag="TCM_013382" /note="dbxref CacaoGD:Thecc1EG013382" mRNA complement(12417916..12418894) /locus_tag="TCM_013382" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013235t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(12418143..12418820) /locus_tag="TCM_013382" /note="paralog of Thecc1EG013235t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21564.1" /translation="MADQRTGSNGKDDKANLNAGEKVAAKPQAKPSDVQEKHAFLFLN VQGKRSKKNIKKIKIKSERDTERTTPAEEWTGVLKSTQEGACENSKILFYRPPNWAAT VPQGDDQQMAESEEGDQIRPVDKLEGSGEHNPHTEKSATQTIYNNKSVSIVACPSDRM EAYAENPPNLESASGKCMYNKELNDVPSIPFASETNFAEIEVHPRVRRRRHSDTEVSI DKILSLA" mobile_element complement(12419947..12420652) /note="source:CACAO_M_E1841_F5_scaffold_1 14357 15078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12420968..12421390) /note="source:CACAO_M_E1841_F5_scaffold_1 10538 10963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12421395..12422354) /note="source:CACAO_M_E1841_F5_scaffold_1 9630 10573" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12422353..12422602) /note="source:INTACT280_F60_scaffold_5-int 9228 9492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12423480..12423941) /note="source:CACAO_M_S_E89272_F5_scaffold_8 6731 7160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12423937..12424597) /note="source:CACAO_M_S_E89272_F5_scaffold_8 6734 7387" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12424943..12425041 /note="source:CACAO_M_S_E118676_F14_scaffold_9 12586 12686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12427090..12428513 /note="source:CACAO_M_E11098_F15_scaffold_2 6239 7682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12430035..12430886 /note="source:CACAO_M_E58324_F9_scaffold_9 7667 8537" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12431005..12431544 /note="source:CACAO_M_E1841_F5_scaffold_1 23899 24468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12431552..12432280 /note="source:CACAO_M_E1841_F5_scaffold_1 4758 5476" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12432873..12442914) /locus_tag="TCM_013384" /note="dbxref CacaoGD:Thecc1EG013384" mRNA complement(join(12432873..12433938,12435273..12435325, 12436575..12437043,12438254..12438454,12439975..12440179, 12441915..12442121,12442687..12442914)) /locus_tag="TCM_013384" /product="Glutamate decarboxylase 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g009880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011174t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03610.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8385t3" mRNA complement(join(12433242..12433938,12435273..12435325, 12436575..12437043,12438254..12438454,12441915..12442108)) /locus_tag="TCM_013384" /product="Glutamate decarboxylase 5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g009880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011174t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03610.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01749t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8385t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc673t22" CDS complement(join(12433456..12433938,12435273..12435325, 12436575..12437043,12438254..12438454,12439975..12440179, 12441915..12442121,12442687..12442697)) /locus_tag="TCM_013384" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011174t1" /codon_start=1 /product="Glutamate decarboxylase 5 isoform 1" /protein_id="EOY21565.1" /db_xref="Phytozome:POPTR_0012s03610.1" /db_xref="TAIR:AT3G17760.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42521" /translation="MLGSFIIISSSTCTRLLLFAPTPLLLSFTQNKNSKRRKEEEETM VISTTDPASDQQVHSSTFASRYVRQPLPRFKMPNSSMPREAARQVITDELMLDGNPRL NLASFVTTWMEPECDQLMLAAINKNYVDMDEYPVTTELQNRCVNMIANLYHAPIGDGE TAVGVGTVGSSEAIMLAGLAFKRKWQQKRKAQGKPYDKPNIVTGANVQVCWEKFARYF EVELKEVKLKEGYYVMDPVKAVDMVDENTICVAAILGSTLTGEFENVKLLHELLTNKN KETGWDTPIHVDAASGGFIAPFVYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW RTKEDLPEELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIIENCI ENARILKEGIEKIGRFEIVSKDVGVPLVAFALKDSSKHTVFEISENLRRFGWIVPAYT MPADAQHVAVLRVVVREDFGRSLAERLVSHIELVVKELELLPSRTAIGSAHFDAVQEE NKDPKSGKKTQREIIEDATRTWRRFVNSKKTGVC" CDS complement(join(12433456..12433938,12435273..12435325, 12436575..12437043,12438254..12438439)) /locus_tag="TCM_013384" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011174t1" /codon_start=1 /product="Glutamate decarboxylase 5 isoform 2" /protein_id="EOY21566.1" /db_xref="Phytozome:POPTR_0012s03610.1" /db_xref="TAIR:AT3G17760.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42472" /translation="MIANLYHAPIGDGETAVGVGTVGSSEAIMLAGLAFKRKWQQKRK AQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLKEGYYVMDPVKAVDMVDENTI CVAAILGSTLTGEFENVKLLHELLTNKNKETGWDTPIHVDAASGGFIAPFVYPDLEWD FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKEDLPEELVFHINYLGSDQPTFTLNFSK GSSQIIAQYYQFIRLGFEGYKNIIENCIENARILKEGIEKIGRFEIVSKDVGVPLVAF ALKDSSKHTVFEISENLRRFGWIVPAYTMPADAQHVAVLRVVVREDFGRSLAERLVSH IELVVKELELLPSRTAIGSAHFDAVQEENKDPKSGKKTQREIIEDATRTWRRFVNSKK TGVC" mobile_element 12444292..12447404 /note="source:CACAO_M_S_E19121_F51_scaffold_3 1 3113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12450617..12450665 /note="source:INTACT1218F_F372_scaffold_6-int 269 318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12452303..12455287 /note="source:INTACT118_F5_scaffold_9-int 9415 12393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12457365..12457416 /note="source:scaffold_9_CACTA_0934 2 53" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12457418..12460739 /note="source:CACAO_M_E14040_F82_scaffold_3 1 3322" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12461019..12461324 /note="source:scaffold_9_CACTA_0934 14873 15174" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12465735..12465837 /note="source:scaffold_2_CACTA_0260 816 919" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12465830..12466447 /note="source:scaffold_2_CACTA_0260 3898 4514" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12467056..12470048) /note="source:CACAO_M_S_E18358_F7_scaffold_3 4 2998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12472289..12472351 /note="source:INTACT103_F9_scaffold_4-int 16546 16608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12472930..12473763 /note="source:CACAO_M_S_E100312_F82_scaffold_9 3909 4743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12473866..12475584) /note="source:CACAO_M_E53587_F207_scaffold_8 8850 10607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12475421..12475741) /note="source:scaffold_9_CACTA_0934 6021 6333" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12476507..12480224 /note="source:CACAO_M_E4676_F9_scaffold_2 1 3738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12480821..12481098 /note="source:INTACT453_F4_scaffold_9-int 15925 16213" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12480846..12481094) /note="source:CACAO_M_S_E15173_F4_scaffold_2 5605 5861" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12481097..12481668 /note="source:INTACT453_F4_scaffold_9-int 16534 17106" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12481669..12483487 /note="source:INTACT104_F144_scaffold_1-int 7752 9384" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12483521..12487527) /note="source:INTACT595_F266_scaffold_7-int 4433 8452" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12487528..12490342 /note="source:CACAO_M_E65104_F7_scaffold_9 1 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12490343..12493800) /note="source:INTACT597_F267_scaffold_2-int 117 4571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12493600..12494012 /note="source:CACAO_M_E47740_F12_scaffold_6 5606 6038" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12493967..12494068) /note="source:CACAO_M_E3129_F369_scaffold_1 8779 8883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12494756..12495957) /note="source:CACAO_M_S_E15173_F4_scaffold_2 535 1717" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(12495940..12530906) /locus_tag="TCM_013393" /note="dbxref CacaoGD:Thecc1EG013393" mRNA complement(join(12495940..12495963,12501977..12502451, 12502981..12503078,12504742..12504855,12504940..12504997, 12509425..12509517,12513038..12513129,12513910..12514020, 12514105..12514299,12514373..12514438,12514507..12515083, 12530852..12530906)) /locus_tag="TCM_013393" /product="D-cysteine desulfhydrase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g33540.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03600.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03049t00001" mobile_element 12496101..12497023 /note="source:INTACT597_F267_scaffold_2-int 13008 13943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12496989..12499185) /note="source:INTACT118_F5_scaffold_9-int 2745 4969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12499361..12499453 /note="source:CACAO_M_S_E5285_F300_scaffold_1 19272 19366" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12499723..12501034 /note="source:CACAO_M_S_E15173_F4_scaffold_2 529 1864" /mobile_element_type="retrotransposon:LTR/Copia" mRNA complement(join(12502017..12502451,12502981..12503078, 12504742..12504800,12504940..12504997,12509425..12509517, 12513038..12513129,12513910..12514020,12514105..12514299, 12514373..12514438,12514507..12514791)) /locus_tag="TCM_013393" /product="D-cysteine desulfhydrase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g33540.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03600.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g2895t1; inference alignment:Newbler:10:TSA:cgbaB_g03049t00001" CDS complement(join(12502247..12502451,12502981..12503078, 12504742..12504855,12504940..12504997,12509425..12509517, 12513038..12513129,12513910..12514020,12514105..12514299, 12514373..12514438,12514507..12514752)) /locus_tag="TCM_013393" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="D-cysteine desulfhydrase isoform 1" /protein_id="EOY21567.1" /db_xref="Phytozome:POPTR_0012s03600.3" /db_xref="TAIR:AT1G48420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SX74" /translation="MLCSAKLTLLRSSLPPLGHSISALRQPKIYCSQSQATETETNDD APKAMALSFDFLGKKPYSPPSWASHLRPIPSHVFSLGHLPTPIHKWNLPNLPQNTEVW LKRDDLSGMQLSGNKVRKLEFLMAEAVAQGADCIITIGGIQSNHCRATAVAAKYLNLD CYLILRTSKALVDQDPGLTGNLLVERFVGAHIQLISKEEYARIGSVALTNVLKEKLLK EGRRPYVIPVGGSNSLGTWGYIEAMREIEQQLQIRSNGVKFDDIVVACGSGGTIAGLS LGSWLGELKAKVHAFCVCDDPDYFYDFVQGLVDGLQAGVDSRDIVSIINAKGLGYAIN TSEELKFVKEIAAATGVVLDPVYSGKAAYGMMKDMAENPKNWEGRKVLFIHTGGLLGL FDKVDQMSSLVGNWQRMDVNESIPRKDGIGKMF" mRNA complement(join(<12502253..12502451,12502981..12503078, 12504742..12504855,12504940..12504997,12513038..12513129, 12513910..12514020,12514105..12514299,12514373..12514438, 12514507..>12514842)) /locus_tag="TCM_013393" /product="D-cysteine desulfhydrase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g33540.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03600.3" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc336t4; inference alignment:Newbler:10:TSA:cgbaB_g03049t00001" CDS complement(join(<12502253..12502451,12502981..12503078, 12504742..12504855,12504940..12504997,12513038..12513129, 12513910..12514020,12514105..12514299,12514373..12514438, 12514507..>12514842)) /locus_tag="TCM_013393" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="D-cysteine desulfhydrase isoform 3" /protein_id="EOY21569.1" /db_xref="Phytozome:POPTR_0012s03600.3" /db_xref="TAIR:AT1G48420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SX74" /translation="ALQEYQKLLLFVFYINLLQKRDELIRKGGDMLCSAKLTLLRSSL PPLGHSISALRQPKIYCSQSQATETETNDDAPKAMALSFDFLGKKPYSPPSWASHLRP IPSHVFSLGHLPTPIHKWNLPNLPQNTEVWLKRDDLSGMQLSGNKVRKLEFLMAEAVA QGADCIITIGGIQSNHCRATAVAAKYLNLDCYLILRTSKALVDQDPGLTGNLLVERFV GAHIQLISKEEYARIGSVALTNVLKEKLLKEGRRPYVIPVGGSNSLGTCGGTIAGLSL GSWLGELKAKVHAFCVCDDPDYFYDFVQGLVDGLQAGVDSRDIVSIINAKGLGYAINT SEELKFVKEIAAATGVVLDPVYSGKAAYGMMKDMAENPKNWEGRKVLFIHTGGLLGLF DKVDQMSSLVGNWQRMDVNESIPRKDGIGKM" CDS complement(join(12504744..12504800,12504940..12504997, 12509425..12509517,12513038..12513129,12513910..12514020, 12514105..12514299,12514373..12514438,12514507..12514752)) /locus_tag="TCM_013393" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="D-cysteine desulfhydrase isoform 2" /protein_id="EOY21568.1" /db_xref="Phytozome:POPTR_0012s03600.3" /db_xref="TAIR:AT1G48420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SX74" /translation="MLCSAKLTLLRSSLPPLGHSISALRQPKIYCSQSQATETETNDD APKAMALSFDFLGKKPYSPPSWASHLRPIPSHVFSLGHLPTPIHKWNLPNLPQNTEVW LKRDDLSGMQLSGNKVRKLEFLMAEAVAQGADCIITIGGIQSNHCRATAVAAKYLNLD CYLILRTSKALVDQDPGLTGNLLVERFVGAHIQLISKEEYARIGSVALTNVLKEKLLK EGRRPYVIPVGGSNSLGTWGYIEAMREIEQQLQIRSNGVKFDDIVVACGSGGTIAGLS LGSWLGELKAKAWLMDFKQVLTHGILLAS" misc_feature complement(join(12509494..12509517,12509987..12510493)) /locus_tag="TCM_013393" /note="Gene fragment of Thecc1EG013393t1; dbxref gnl|CacaoGD|Thecc1EG013393t1; quality class is mediumpartial-partof is thecc1eg013393t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4738t2; dbxref CacaoGD:Thecc1EG013395t1" mobile_element 12511547..12511986 /note="source:scaffold_8_CACTA_0859 16011 16468" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12520079..12520140) /note="source:CACAO_Mariner_E180_scaffold_6 4519 4581" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 12521096..12523950 /note="source:CACAO_M_E14060_F15_scaffold_3 1 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12524260..12524309 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4122 4171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12525663..12526511 /note="source:CACAO_M_E1841_F5_scaffold_1 22067 22916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12526512..12527078 /note="source:CACAO_M_E1841_F5_scaffold_1 25924 26503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12527560..12527610 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4128 4178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12532633..12532816) /note="source:INTACT20_F8_scaffold_7-int 9204 9393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12532820..12534254 /note="source:CACAO_M_E11098_F15_scaffold_2 14693 16142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12534261..12537352) /note="source:INTACT20_F8_scaffold_7-int 6074 9203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12537337..12537377) /note="source:INTACT280_F60_scaffold_5-int 14300 14340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12537343..12540100 /note="source:CACAO_M_E33282_F13_scaffold_4 6355 9079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12541996..12542703 /note="source:scaffold_2_CACTA_0262 5420 6124" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12543123..12545145 /note="source:scaffold_2_CACTA_0262 6540 8555" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12545187..12545509) /note="source:INTACT30F_F12_scaffold_1-int 14388 14711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12545517..12547327 /note="source:scaffold_3_CACTA_0388 9209 10982" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12547900..12547932) /note="source:scaffold_8_CACTA_0859 16513 16545" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12548837..12549809) /note="source:CACAO_PIF_E38_scaffold_2 6317 7270" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 12570537..12570576 /note="source:INTACT691_F9_scaffold_7-int 2638 2677" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12570740..12570818) /note="source:CACAO_M_S_E89272_F5_scaffold_8 9603 9681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12570767..12570829 /note="source:INTACT691_F9_scaffold_7-int 2880 2943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12570841..12570897 /note="source:INTACT691_F9_scaffold_7-int 3773 3829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12570892..12571581) /note="source:INTACT607_F3_scaffold_4-int 12479 13172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12571617..12572634 /note="source:CACAO_LINE_E_64_scaffold_2 5 1028" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(12572633..12573029) /note="source:CACAO_M_S_E119615_F3_scaffold_9 17324 17720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12574733..12576055) /note="source:CACAO_M_E5627_F4_scaffold_2 1 1342" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12576096..12577824 /note="source:scaffold_9_CACTA_0927 13598 15327" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12579953..12582927 /note="source:CACAO_M_E14074_F143_scaffold_3 1 2975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12586761..12587017 /note="source:scaffold_3_CACTA_0384 13920 14146" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12588334..12589266 /note="source:CACAO_M_S_E89272_F5_scaffold_8 6734 7622" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12589257..12589505 /note="source:CACAO_M_S_E89272_F5_scaffold_8 7972 8217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12600771..12600865 /note="source:INTACT19F_F94_scaffold_1-int 14263 14350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12602009..12602279) /note="source:INTACT261_F189_scaffold_2-int 219 401" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12604308..12604495 /note="source:INTACT19F_F94_scaffold_1-int 14303 14493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12605637..12605718) /note="source:INTACT261_F189_scaffold_2-int 206 283" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12606347..12607215) /note="source:scaffold_3_CACTA_0384 13738 14613" /mobile_element_type="transposon:TIR/CACTA" gene complement(12609459..12613175) /locus_tag="TCM_013400" /note="dbxref CacaoGD:Thecc1EG013400" mRNA complement(join(12609459..12610825,12610940..12611379, 12611667..12611778,12611901..12612032,12612505..12612569, 12612890..12613175)) /locus_tag="TCM_013400" /product="Homeodomain-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g34340.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03530.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1077t3; inference alignment:Newbler:10:TSA:cgbaL_g11294t00001" mRNA complement(join(12609620..12610825,12610940..12611371, 12611519..12611580,12611667..12611778,12611901..12612032, 12612505..12612569,12612890..12613161)) /locus_tag="TCM_013400" /product="Homeodomain-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g34340.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11294t00001" CDS complement(join(12610121..12610825,12610940..12611379, 12611667..12611778,12611901..12612032,12612505..12612516)) /locus_tag="TCM_013400" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Homeodomain-like superfamily protein, putative isoform 2" /protein_id="EOY21571.1" /db_xref="Phytozome:POPTR_0012s03530.1" /translation="MATQDQVEGTTSPNALKSGICCSNSSPQCETLTQFQELYTFKHD HTPKVRKPYTITKQREKWTEEEHQKFLEALRLYGRGWRQIEGFQVVRESNGGFEGSIN PIEIPPPRPKRKPVHPYPRKSVDSLKGISPSSEPERSPSPSQFVREQDNKSPTSVLSA LTSDAMGSAASEQQNGCSSPTSCTTNMQSINTSPVEKDIDYATSNSSAEEEKASLSSV KVFGHSAVEDVLPMKLNADFKGSVGAKGDAKMVVPFTSIKLFGKTVQVKDSRKPSMDA ENFKSPTSKTAQGDIDAEGDMLVQALPSTHLDTRLSLGTVNEDWSVVPSQANLSPYME IHPDKLDHVESTSDAPLPWWTFYQGLPFYYITSFNQTQTDSCVEERVKQKEILNERSS TGSNTGSVSQAENREKSSYSVDSQCQRPCPEGKTTLQKCSRGFVPYKRCLAERDMSSS VVMSEERERQRSRVCS" CDS complement(join(12610121..12610825,12610940..12611371, 12611519..12611580,12611667..12611778,12611901..12612032, 12612505..12612516)) /locus_tag="TCM_013400" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Homeodomain-like superfamily protein, putative isoform 1" /protein_id="EOY21570.1" /db_xref="Phytozome:POPTR_0012s03530.1" /translation="MATQDQVEGTTSPNALKSGICCSNSSPQCETLTQFQELYTFKHD HTPKVRKPYTITKQREKWTEEEHQKFLEALRLYGRGWRQIEEHVGTKTAVQIRSHAQK FFSKVVRESNGGFEGSINPIEIPPPRPKRKPVHPYPRKSVDSLKGISPSSEPERSPSP SQFVREQDNKSPTSVLSALTSDAMGSAASEQQNGCSSPTSCTTNMQSINTSPVEKDID YATSNSSAEEEKASLSSVKVFGHSAVEDVLPMKLNADFKGSVGAKGDAKMVVPFTSIK LFGKTVQVKDSRKPSMDAENFKSPTSKTAQGDIDAEGDMLVQALPSTHLDTRLSLGTV NEDWSVVPSQANLSPYMEIHPDKLDHVESTSDAPLPWWTFYQGLPFYYITSFNQTQTD SCVEERVKQKEILNERSSTGSNTGSVSQAENREKSSYSVDSQCQRPCPEGKTTLQKCS RGFVPYKRCLAERDMSSSVVMSEERERQRSRVCS" gene 12613308..13771723 /locus_tag="TCM_013401" /note="dbxref CacaoGD:Thecc1EG013401" mRNA join(12613308..12613740,13753436..13753677, 13753919..13753996,13754077..13754139,13754557..13754604, 13754674..13754820,13755196..13755327,13756507..13756547, 13757262..13757353,13757490..13757617,13759713..13759788, 13759961..13760081,13760150..13760249,13761284..13761379, 13761517..13761628,13764605..13764687,13765159..13765275, 13765680..13765731,13766001..13766156,13767549..13767672, 13767778..13767859,13767947..13768035,13768138..13768212, 13768310..13768364,13769129..13769248,13769335..13769427, 13769513..13769658,13770182..13770359,13770498..13771723) /locus_tag="TCM_013401" /product="ARM repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007840001" /inference="similar to AA sequence:Phytozome:GSVIVT01007840001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3133t5" mobile_element 12617116..12619860 /note="source:CACAO_M_E14079_F73_scaffold_3 1 2745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12621882..12630230 /note="source:CACAO_M_E14081_F316_scaffold_3 1 8349" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12640237..12641461 /note="source:CACAO_M_E14081_F316_scaffold_3 8350 9574" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12641582..12642238 /note="source:CACAO_M_E14081_F316_scaffold_3 9575 10231" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12643156..12643741 /note="source:CACAO_M_E14081_F316_scaffold_3 10232 10817" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12646698..12648646 /note="source:CACAO_M_E14081_F316_scaffold_3 13580 15528" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12655140..12655788) /note="source:CACAO_M_E50311_F328_scaffold_7 5818 6469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12656033..12656336) /note="source:CACAO_M_E50311_F328_scaffold_7 5573 5883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12656418..12658699) /note="source:CACAO_M_E50311_F328_scaffold_7 3289 5579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12660778..12662321 /note="source:CACAO_M_E52278_F17_scaffold_7 1 1531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12663399..12665324 /note="source:CACAO_M_E14113_F106_scaffold_3 10690 12012" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12665399..12670900 /note="source:CACAO_M_E14113_F106_scaffold_3 12426 17897" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12670897..12670936) /note="source:INTACT224_F176_scaffold_8-int 2514 2553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12672445..12673521) /note="source:INTACT597_F267_scaffold_2-int 12845 13910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12674836..12676436 /note="source:scaffold_5_CACTA_0585 7016 8595" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12676498..12679863 /note="source:INTACT191F_F350_scaffold_3-int 1951 5300" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12679856..12680613 /note="source:CACAO_M_E50492_F96_scaffold_7 5922 6680" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12680619..12680674 /note="source:CACAO_M_E50311_F328_scaffold_7 8118 8173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12680871..12681037 /note="source:INTACT74_F134_scaffold_5-int 7871 8049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12680968..12681249) /note="source:INTACT93F_F345_scaffold_2-int 2411 2690" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12681021..12683537 /note="source:scaffold_5_CACTA_0585 7018 9515" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12683407..12683561 /note="source:CACAO_M_S_E34046_F60_scaffold_4 11699 11865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12683594..12683856 /note="source:INTACT570_F260_scaffold_5-int 4711 4968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12683829..12684809) /note="source:CACAO_M_S_E14932_F233_scaffold_2 7555 8550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12684792..12685666) /note="source:CACAO_M_S_E14932_F233_scaffold_2 2514 3587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12685655..12687343) /note="source:scaffold_2_CACTA_0263 2824 4562" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12686836..12687444) /note="source:CACAO_M_E5326_F22_scaffold_2 20673 21351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12687173..12688334 /note="source:CACAO_M_S_E101631_F270_scaffold_9 6505 7631" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12688329..12689641) /note="source:INTACT649F_F368_scaffold_5-int 1472 2814" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12689621..12689705 /note="source:scaffold_4_CACTA_0489 4118 4203" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12689639..12689824) /note="source:CACAO_M_S_E14932_F233_scaffold_2 2572 2756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12689825..12699058 /note="source:CACAO_M_S_E19200_F389_scaffold_3 1 9234" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12699059..12708855 /note="source:CACAO_M_S_E84376_F22_scaffold_6 9014 18853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12708847..12709667 /note="source:scaffold_3_CACTA_0383 3837 4674" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12709533..12709698 /note="source:CACAO_M_E14113_F106_scaffold_3 11820 11992" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12709699..12710326) /note="source:scaffold_1_CACTA_0016 8031 8781" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12710314..12710404) /note="source:INTACT506_F233_scaffold_3-int 10014 10104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12710460..12710508) /note="source:CACAO_M_S_E98851_F233_scaffold_8 1324 1371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12710609..12712041 /note="source:CACAO_M_S_E17777_F2_scaffold_3 2416 3884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12711611..12713238) /note="source:CACAO_M_E3248_F5_scaffold_1 1653 2765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12713190..12713483 /note="source:CACAO_M_E4665_F47_scaffold_2 1683 1982" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12717628..12719286 /note="source:INTACT639F_F363_scaffold_5-int 8622 10266" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12722627..12722701 /note="source:INTACT319_F3_scaffold_1-int 9781 9854" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12722796..12723566 /note="source:CACAO_M_E23991_F4_scaffold_4 13953 14386" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12723577..12747230 /note="source:CACAO_M_E14113_F106_scaffold_3 1 23654" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12748511..12750372 /note="source:INTACT167_F5_scaffold_2-int 3832 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12760442..12762939) /note="source:CACAO_M_E58324_F9_scaffold_9 7657 10224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12763986..12764424) /note="source:CACAO_M_S_E7818_F60_scaffold_2 20527 20962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12764773..12765458 /note="source:INTACT85_F9_scaffold_4-int 736 1428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12765588..12768311 /note="source:CACAO_M_E14131_F96_scaffold_3 1 2724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12768259..12768319) /note="source:INTACT406_F208_scaffold_3-int 6368 6425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12770057..12770102) /note="source:INTACT39F_F22_scaffold_1-int 286 333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12773588..12774160 /note="source:scaffold_8_CACTA_0859 16507 17063" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12776357..12777140) /note="source:INTACT597_F267_scaffold_2-int 16783 17568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12776369..12777073 /note="source:CACAO_M_E58324_F9_scaffold_9 21590 22304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12777070..12778663 /note="source:CACAO_M_E58324_F9_scaffold_9 22515 24071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12777400..12783212) /note="source:INTACT676_F297_scaffold_3-int 3167 9015" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12783213..12786186 /note="source:CACAO_M_E14141_F15_scaffold_3 1 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12786187..12787497) /note="source:INTACT406_F208_scaffold_3-int 444 1753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12787494..12789163 /note="source:CACAO_M_E58324_F9_scaffold_9 22515 24071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12792564..12792698) /note="source:CACAO_M_E14347_F12_scaffold_3 8759 8865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12797006..12799477) /note="source:CACAO_M_S_E101631_F270_scaffold_9 17182 19636" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12799411..12801031 /note="source:CACAO_M_E53135_F19_scaffold_8 4752 6334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12802086..12802791) /note="source:CACAO_M_E1841_F5_scaffold_1 25784 26542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12802505..12804956 /note="source:CACAO_M_E3248_F5_scaffold_1 2073 4497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12806657..12806875 /note="source:scaffold_2_CACTA_0262 13257 13464" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12808009..12808988) /note="source:scaffold_2_CACTA_0262 7813 8828" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12808295..12810566 /note="source:CACAO_M_E3248_F5_scaffold_1 1651 3932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12810567..12813232 /note="source:CACAO_M_S_E19254_F335_scaffold_3 1 2666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12813233..12813802 /note="source:CACAO_M_E3248_F5_scaffold_1 3928 4499" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12817532..12819079) /note="source:CACAO_M_E22324_F60_scaffold_3 195 1742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12819120..12819205) /note="source:CACAO_M_S_E88468_F60_scaffold_7 1 86" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12822327..12822578) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5990 6232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12822708..12822778) /note="source:CACAO_M_S_E7818_F60_scaffold_2 19306 19377" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12824069..12825433) /note="source:INTACT789_F335_scaffold_1-int 5119 6466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12827716..12827820) /note="source:CACAO_M_S_E1495_F60_scaffold_1 1856 1963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12831523..12834780 /note="source:CACAO_M_E14153_F378_scaffold_3 1 3232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12835831..12836976 /note="source:CACAO_M_E58324_F9_scaffold_9 21588 22745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12836954..12839566 /note="source:scaffold_5_CACTA_0585 7018 8595" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12839566..12840834 /note="source:CACAO_M_E52239_F256_scaffold_7 4938 6163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12840807..12840991) /note="source:INTACT265_F12_scaffold_7-int 7162 7340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12840808..12840972 /note="source:CACAO_M_E52239_F256_scaffold_7 22275 22439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12847259..12849485) /note="source:INTACT740_F9_scaffold_10-int 2029 4238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12849486..12852144) /note="source:CACAO_M_E52239_F256_scaffold_7 19813 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12852144..12852788) /note="source:CACAO_M_S_E32835_F9_scaffold_4 1407 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12852789..12853768) /note="source:CACAO_M_S_E109853_F60_scaffold_9 6249 7229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12853763..12854563) /note="source:CACAO_M_S_E109853_F60_scaffold_9 14133 14931" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12854561..12856344 /note="source:INTACT506_F233_scaffold_3-int 1044 2816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12856346..12857861 /note="source:CACAO_M_S_E64832_F14_scaffold_5 10909 12675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12857852..12858287) /note="source:INTACT193_F12_scaffold_1-int 7556 7990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12858286..12859074) /note="source:INTACT740_F9_scaffold_10-int 1298 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12859074..12860031) /note="source:INTACT193_F12_scaffold_1-int 6584 7566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12869099..12869180) /note="source:CACAO_M_E5899_F5_scaffold_2 21629 21713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12870030..12871888 /note="source:CACAO_M_E14171_F4_scaffold_3 1 1859" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(12871769..12874143) /locus_tag="TCM_013418" /note="dbxref CacaoGD:Thecc1EG013418" mRNA complement(join(12871769..12872627,12874020..12874143)) /locus_tag="TCM_013418" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.12 coverage" CDS complement(12871804..12872037) /locus_tag="TCM_013418" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21574.1" /translation="MNPLPCNNNPGGPLSSDSHNYGSLDDVGRHRKNQVVATTYNNLW PSHVYTVEMSLTANWDWLRLDSNHALVSFMLND" mobile_element complement(12874075..12874160) /note="source:CACAO_M_E3884_F22_scaffold_1 13043 13129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12876353..12879181 /note="source:CACAO_M_E639_F17_scaffold_1 2 2834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12879167..12879480 /note="source:CACAO_M_E639_F17_scaffold_1 3908 4222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12879813..12882675 /note="source:CACAO_M_E639_F17_scaffold_1 4373 7215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12884993..12885187 /note="source:CACAO_M_E639_F17_scaffold_1 10174 10364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12887383..12888589 /note="source:INTACT234_F12_scaffold_9-int 1 1215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12888568..12888610) /note="source:INTACT285_F13_scaffold_9-int 9010 9055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12888602..12895931 /note="source:INTACT234_F12_scaffold_9-int 2867 10186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12898730..12902937 /note="source:CACAO_LINE_E_238_scaffold_9 573 4779" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(12902898..12902936) /note="source:CACAO_M_S_E64832_F14_scaffold_5 12677 12710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12902937..12905536 /note="source:CACAO_M_E26796_F96_scaffold_4 1 2542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12905537..12905954 /note="source:CACAO_LINE_E_238_scaffold_9 4774 5191" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 12906798..12908170 /note="source:CACAO_M_E639_F17_scaffold_1 119 1498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12910171..12910911 /note="source:INTACT649F_F368_scaffold_5-int 8470 9215" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12910912..12911006) /note="source:CACAO_M_E3884_F22_scaffold_1 13039 13129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12911870..12912086) /note="source:INTACT649F_F368_scaffold_5-int 15912 16130" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12912115..12915649 /note="source:INTACT481_F226_scaffold_1-int 1367 4882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12915650..12916504 /note="source:scaffold_5_CACTA_0591 10060 10903" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12916530..12918226 /note="source:CACAO_M_S_E5046_F335_scaffold_1 19192 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12918227..12918701 /note="source:INTACT481_F226_scaffold_1-int 4878 5354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12921528..12923615 /note="source:INTACT481_F226_scaffold_1-int 8066 10203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12923610..12923901 /note="source:INTACT481_F226_scaffold_1-int 1359 1643" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12923901..12924057 /note="source:INTACT189_F49_scaffold_5-int 17910 18066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12925660..12928464 /note="source:CACAO_M_S_E19296_F15_scaffold_3 1 2776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12929103..12929343) /note="source:scaffold_2_CACTA_0262 1 240" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12930362..12930506) /note="source:INTACT189_F49_scaffold_5-int 18432 18577" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12931120..12932164 /note="source:CACAO_M_S_E5046_F335_scaffold_1 18259 19323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12932165..12935106 /note="source:CACAO_M_E14188_F15_scaffold_3 1 2942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12935107..12936715 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1059 2627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12936627..12936736 /note="source:scaffold_6_CACTA_0710 15734 15847" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12939268..12939376 /note="source:scaffold_2_CACTA_0262 5062 5186" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12941941..12942027) /note="source:INTACT189_F49_scaffold_5-int 2780 2865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12944384..12944483 /note="source:scaffold_2_CACTA_0262 5395 5495" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12944408..12947559) /note="source:scaffold_2_CACTA_0262 11404 14559" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12951071..12952280 /note="source:CACAO_M_E58324_F9_scaffold_9 1 1215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12952552..12952651 /note="source:scaffold_9_CACTA_0929 9956 10053" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12953942..12958731 /note="source:INTACT83_F5_scaffold_9-int 1 4740" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12958733..12959905 /note="source:CACAO_M_S_E145698_F277_scaffold_11 1 1173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12960006..12960447 /note="source:CACAO_M_S_E145698_F277_scaffold_11 17991 18432" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 12960448..12970447 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 12970448..12971548 /note="source:INTACT83_F5_scaffold_9-int 5454 6555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12971547..12972620 /note="source:CACAO_M_E9395_F12_scaffold_2 22801 23874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12972621..12975241) /note="source:CACAO_M_E43348_F5_scaffold_5 874 3486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12975242..12975668) /note="source:CACAO_M_E69295_F141_scaffold_9 1 3088" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12975669..12978362 /note="source:CACAO_M_S_E6687_F86_scaffold_2 6567 9224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12978363..12979145) /note="source:INTACT167_F5_scaffold_2-int 162 955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12978941..12979380 /note="source:CACAO_M_E1841_F5_scaffold_1 752 1210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12979792..12980046) /note="source:CACAO_M_E43348_F5_scaffold_5 4621 4874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12980928..12981159 /note="source:CACAO_M_E33933_F9_scaffold_4 24797 25029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12981880..12981941 /note="source:INTACT265_F12_scaffold_7-int 12261 12325" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 12986042..13009186 /locus_tag="TCM_013428" /note="dbxref CacaoGD:Thecc1EG013428" mRNA join(12986042..12986492,12987475..12987740, 12987827..12987901,12987994..12988052,12988171..12988306, 12988509..12988605,12988713..12988779,12991399..12991497, 13002785..13002874,13004507..13004661,13007535..13007636, 13007748..13007871,13008913..13009186) /locus_tag="TCM_013428" /product="Endosomal targeting BRO1-like domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026799" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007655t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400026799" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08896t00001" mRNA join(12986213..12986492,12987089..12987147, 12987475..12987740,12987827..12987901,12987994..12988052, 12988171..12988306,12988509..12988605,12988713..12988779, 12991399..12991497,13002785..13002874,13004507..13004661, 13007535..>13007561) /locus_tag="TCM_013428" /product="Endosomal targeting BRO1-like domain-containing protein isoform 3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007655t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400026799" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1293t3" mRNA join(12986295..12986663,12987475..12987740, 12987827..12987901,12987994..12988052,12988171..12988306, 12988509..12988605,12988713..12988779,12991399..12991497, 13002785..13002874,13004507..13004661,13007535..13007636, 13007748..13008129) /locus_tag="TCM_013428" /product="Endosomal targeting BRO1-like domain-containing protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007655t2" /inference="similar to AA sequence:Phytozome:POPTR_0017s03490.4" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage" CDS join(12986629..12986663,12987475..12987740, 12987827..12987901,12987994..12988052,12988171..12988306, 12988509..12988605,12988713..12988779,12991399..12991497, 13002785..13002874,13004507..13004661,13007535..13007636, 13007748..13007892) /locus_tag="TCM_013428" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG007655t2" /codon_start=1 /product="Endosomal targeting BRO1-like domain-containing protein isoform 2" /protein_id="EOY21576.1" /db_xref="Phytozome:POPTR_0017s03490.4" /db_xref="TAIR:AT1G73390.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FX34" /translation="MAYESLFSLFALYCNSQDMGCLVSTPKDSGGNRRRPGNIGEISV YVPGLRIPKPVDFFQSLGGHLSKTLVERLTALRTRIVVMAGQEGPTITRTRRKTQHGG STLADLHQALEDYLPVLLGLIKDGSQLQFKVQFIWVNQEDDAEETAMFNAWYEVLSVL HLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASIDIFLKAAGYLDCAVRHVLPQL PSELRRNLPVDLAEGVLRALCLQALGQGVDIQLGLAIDSTKATLAVKRRLACEMVKYW QQAQDNIMNLQLSNGWGEKHRHFVKWKYIEAKAAAYYYHGLILDEGNTEKSHGMAVAA LQAADEYFKESKKACEVFNAAHPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSH EKIMETAPTLPDFALALKPDEYQLPPADPSWNENVQSHIGINQVKSDKR" CDS join(12987494..12987740,12987827..12987901, 12987994..12988052,12988171..12988306,12988509..12988605, 12988713..12988779,12991399..12991497,13002785..13002874, 13004507..13004661,13007535..13007636,13007748..13007871, 13008913..13009068) /locus_tag="TCM_013428" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG007655t2" /codon_start=1 /product="Endosomal targeting BRO1-like domain-containing protein isoform 1" /protein_id="EOY21575.1" /db_xref="Phytozome:PGSC0003DMP400026799" /db_xref="TAIR:AT1G73390.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FX34" /translation="MGCLVSTPKDSGGNRRRPGNIGEISVYVPGLRIPKPVDFFQSLG GHLSKTLVERLTALRTRIVVMAGQEGPTITRTRRKTQHGGSTLADLHQALEDYLPVLL GLIKDGSQLQFKVQFIWVNQEDDAEETAMFNAWYEVLSVLHLMAMLSLSQANLLLLPR TSADGYQPKVSEESRRASIDIFLKAAGYLDCAVRHVLPQLPSELRRNLPVDLAEGVLR ALCLQALGQGVDIQLGLAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLQLSNGWGE KHRHFVKWKYIEAKAAAYYYHGLILDEGNTEKSHGMAVAALQAADEYFKESKKACEVF NAAHPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSHEKIMETAPTLPDFALALK PDEYQLPPADPSWNENVQSHIGINQVIIGGGEGRGFLGGGAAAFVGGVALAVEAPAVE EDKVEESDDEDMGFSLFD" CDS join(12987494..12987740,12987827..12987901, 12987994..12988052,12988171..12988306,12988509..12988605, 12988713..12988779,12991399..12991497,13002785..13002874, 13004507..13004661,13007535..>13007559) /locus_tag="TCM_013428" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG007655t2" /codon_start=1 /product="Endosomal targeting BRO1-like domain-containing protein isoform 3" /protein_id="EOY21577.1" /db_xref="Phytozome:PGSC0003DMP400026799" /db_xref="TAIR:AT1G73390.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FX34" /translation="MGCLVSTPKDSGGNRRRPGNIGEISVYVPGLRIPKPVDFFQSLG GHLSKTLVERLTALRTRIVVMAGQEGPTITRTRRKTQHGGSTLADLHQALEDYLPVLL GLIKDGSQLQFKVQFIWVNQEDDAEETAMFNAWYEVLSVLHLMAMLSLSQANLLLLPR TSADGYQPKVSEESRRASIDIFLKAAGYLDCAVRHVLPQLPSELRRNLPVDLAEGVLR ALCLQALGQGVDIQLGLAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLQLSNGWGE KHRHFVKWKYIEAKAAAYYYHGLILDEGNTEKSHGMAVAALQAADEYFKESKKACEVF NAAHPLSRNPPLWGTM" gene complement(12995030..13000076) /locus_tag="TCM_013430" /note="dbxref CacaoGD:Thecc1EG013430" mRNA complement(join(12995030..12995470,12995837..12995923, 12996133..12996282,12996419..12996582,12997269..12997384, 12999607..13000076)) /locus_tag="TCM_013430" /product="Uncharacterized protein" /note="quality class is medium-expresste, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage" CDS complement(join(12995267..12995470,12995837..12995923, 12996133..12996282,12996419..12996582,12997269..12997384, 12999607..12999884)) /locus_tag="TCM_013430" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21578.1" /translation="MAKSVLEENSVVVADVIPVMTKVTKHKLNGSNYLDWSKIVWIYL RSIDKDDHITNDPPTDNKRQTWMREDEGLFLQIRNSINSGIISLINHCHSFVSSVDFI SIPKTIDEALSHLGWRAAMVKEMVALDGNGKLGAKSCNAPMTPNLQLTKEYGNLFEDP EKYRRLVGKLNYLTVTHLDIAYFVSIMQIGQVPRLVGDPLQDSVFIEENLVSWKSKKR IVVSRSSAKSEYRAMAQTKFLVKVNVRGLGKEAHLTESYPDKEHATKLLANKDVSSLF DVVTTVVSATKESVLTSSDVADQSTIVSQGTSGFISEYRGGSCGEEAILEVMVEKD" mobile_element complement(12996074..13000034) /note="source:CACAO_M_S_E84962_F188_scaffold_7 277 4292" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13000120..13000370) /note="source:INTACT260_F46_scaffold_1-int 1 267" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13013608..13016349) /note="source:CACAO_M_E22484_F328_scaffold_3 11522 14254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13016320..13016378 /note="source:CACAO_M_E35511_F5_scaffold_5 13625 13677" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13033034..13033657 /note="source:scaffold_6_CACTA_0702 3112 3739" /mobile_element_type="transposon:TIR/CACTA" gene complement(13035637..13037417) /locus_tag="TCM_013434" /note="dbxref CacaoGD:Thecc1EG013434" mRNA complement(join(13035637..13036739,13037087..13037417)) /locus_tag="TCM_013434" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.99 coverage" CDS complement(13035703..13036158) /locus_tag="TCM_013434" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21579.1" /translation="MATDEKYRSQFCLEAAGSGQTRMDGLLSPNNEAIEFARDDVDGR EKQSYDLSNDVTKSSSDDSGDTSSSTMAENFEAAMIQRAIEKSMSITVNLQCLHPRGH EGICNPLEFCVKIGVFYLKLYDSTCYVKLHETVLLNVLYLLMDQEQVSV" gene complement(13036957..13041882) /locus_tag="TCM_013435" /note="dbxref CacaoGD:Thecc1EG013435" mRNA complement(join(13036957..13037220,13037515..13037585, 13039321..13041882)) /locus_tag="TCM_013435" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is noncode_complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1206t6" gene complement(13037663..13046063) /locus_tag="TCM_013436" /note="dbxref CacaoGD:Thecc1EG013436" mRNA complement(join(13037663..13037829,13037893..13037940, 13043398..13043561,13044324..13044377,13044528..13044647, 13045173..13045576,13045699..13045817)) /locus_tag="TCM_013436" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g33520.1" /inference="similar to AA sequence:Phytozome:GSVIVT01024230001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00954t00001; inference alignment:Newbler:10:TSA:cgbaL_g00954t00001; inference alignment:Newbler:10:TSA:cgbaB_g09545t00001" mRNA complement(join(13037705..13037940,13039321..13039497, 13043398..13043561,13044324..13044377,13044528..13044647, 13045173..13045576,13045699..13046063)) /locus_tag="TCM_013436" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g33520.1" /inference="similar to AA sequence:Phytozome:GSVIVT01024230001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09545t00001" CDS complement(join(13037730..13037829,13037893..13037940, 13043398..13043561,13044324..13044377,13044528..13044647, 13045173..13045538)) /locus_tag="TCM_013436" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21582.1" /db_xref="Phytozome:GSVIVT01024230001" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9I8" /translation="MVSCLSLSTNSLSEKIAFKKYRRGIKRGCIKRPQILPTALRDGF GLRVFVLSDLHTDYPENMAWVRSFPTKRHNKDVLLVAGDVAEMYDNFVLTMSLLRDRF EYVFYVPGNHDLWCRWERDDLDSLQKLNKLLDACRQLGVETNPVVIDGLGIVPLFSWY HESFDREEDITGIRIPSLDMACKDFRACKWPGNLSNRDSSLALYFDAMNENNQDTVKQ IQSTCSQIITFSHFVPRYVQAPLAYPRERRRRISPCYWSDYYAANPRTPHNTQLAPWV ARFYNLV" CDS complement(join(13037730..13037940,13039321..13039497, 13043398..13043561,13044324..13044377,13044528..13044647, 13045173..13045538)) /locus_tag="TCM_013436" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21581.1" /db_xref="Phytozome:GSVIVT01024230001" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9I8" /translation="MVSCLSLSTNSLSEKIAFKKYRRGIKRGCIKRPQILPTALRDGF GLRVFVLSDLHTDYPENMAWVRSFPTKRHNKDVLLVAGDVAEMYDNFVLTMSLLRDRF EYVFYVPGNHDLWCRWERDDLDSLQKLNKLLDACRQLGVETNPVVIDGLGIVPLFSWY HESFDREEDITGIRIPSLDMACKDFRACKWPGNLSNRDSSLALYFDAMNENNQDTVKQ IQSTCSQIITFSHFVPRQELCPEKRMLFYPNLPKIIGSDWLEDRIRSIHGIEGSSFAC HVFGHTHFCWDAIVDGIRYVQAPLAYPRERRRRMNGGETWLPFCIYSDGDFSGRISPC YWSDYYAANPRTPHNTQLAPWVARFYNLV" CDS complement(13041116..13041487) /locus_tag="TCM_013435" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21580.1" /translation="MKSSQLGEKIKLLQLENSPNGQSFSVEASELKARMRYLEGIQSE IKCKIIELQQENKKLWQEKEEAKSQVHILELENNWLQHILSSRWSKKEKQNLEIKLTL LRKENQQLQYLKEYQDKLVFS" mobile_element 13048624..13048787 /note="source:scaffold_6_CACTA_0702 12078 12253" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13049085..13056884 /note="source:scaffold_3_CACTA_0385 1 7800" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13055011..13057287 /note="source:INTACT481_F226_scaffold_1-int 8066 10349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13057269..13058419 /note="source:CACAO_M_S_E6055_F310_scaffold_2 467 1639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13059680..13065958) /note="source:CACAO_M_S_E101224_F9_scaffold_9 5789 12027" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13065959..13068926 /note="source:CACAO_M_S_E19322_F7_scaffold_3 1 2968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13068927..13071107) /note="source:CACAO_M_S_E101224_F9_scaffold_9 3634 5793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13072256..13073790) /note="source:CACAO_M_E33933_F9_scaffold_4 2040 3587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13073025..13074345 /note="source:CACAO_M_S_E51565_F2_scaffold_4 8188 9517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13074385..13075812) /note="source:CACAO_M_E33933_F9_scaffold_4 23582 25012" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13076977..13081738) /locus_tag="TCM_013440" /note="dbxref CacaoGD:Thecc1EG013440" mRNA complement(join(13076977..13077663,13077769..13077876, 13078061..13078333,13078419..13078505,13078715..13078909, 13079131..13079259,13079446..13079568,13079649..13079820, 13080395..13080684,13080802..13081738)) /locus_tag="TCM_013440" /product="White-brown complex protein 11" /inference="alignment:exonerate- protein:2:ricco:29681.m001373" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040754t1" /inference="similar to AA sequence:ricco:29681.m001373" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09190t00001" CDS complement(join(13077271..13077663,13077769..13077876, 13078061..13078333,13078419..13078505,13078715..13078909, 13079131..13079259,13079446..13079568,13079649..13079820, 13080395..13080684,13080802..13081188)) /locus_tag="TCM_013440" /note="dbxref ricco:29681.m001373; paralog of Thecc1EG040754t1" /codon_start=1 /product="White-brown complex protein 11" /protein_id="EOY21583.1" /db_xref="TAIR:AT1G17840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXN0" /translation="MSNSASNVMMEIESNKPAGNGMVVGGLSPLSETLWREKTNTEFV GDVSARITWKDLTVMVTLSNGETQKVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS SRLAANAFLSGAILLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM PWSEKRALVESTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLD EPTSGLDSASAFFVTQTLRGLSRDGRTVIASVHQPSSEVFELFDQLYLLSSGKTVYFG QASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEASDDPLDK ITTAEAIRSLIDFYHTSQQCYTAKERVDEISKVKGTVLDSGGSQASFLMQSYTLTKRS FINMSRDFGYYWLRLLIYIVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI GGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTVCYFMVRLHP GFEHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPN DIPKPVWRYPMSYISFHFWALQGQYQNDLKGLLFDNQSPELPKIPGEYILENVFQIDV GRSKWIDLSVIFSMIFIYRIIFFFMIKISEDVTPWIRGLIARRRMQQKNGTQNTTVAP DGLTKSPSLRAYAANRATRTGKRWTTRLHARDPTNN" mobile_element 13084543..13087158 /note="source:CACAO_M_E14206_F297_scaffold_3 1 2616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13087383..13088530) /note="source:CACAO_M_E71671_F17_scaffold_10 386 1527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13088620..13089005 /note="source:CACAO_M_E49857_F85_scaffold_7 20670 21045" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13089243..13090292 /locus_tag="TCM_013441" /note="dbxref CacaoGD:Thecc1EG013441" mRNA join(13089243..13089465,13089746..13089859, 13090021..13090292) /locus_tag="TCM_013441" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS join(13089353..13089465,13089746..13089859, 13090021..13090087) /locus_tag="TCM_013441" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21584.1" /translation="MWSIKRVKRLFDLLDGGKRAMWNKMEKERKMGGGGAIREERRAN FAVNLKVRGAALGADFEGWKMKFWLLILKAERQEVVVGGEREREEEIVDGSCM" mobile_element 13090311..13090492 /note="source:CACAO_M_E35674_F13_scaffold_5 6936 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13090776..13091259) /note="source:CACAO_M_S_E83372_F14_scaffold_6 14998 15505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13091255..13091815) /note="source:CACAO_M_S_E145445_F22_scaffold_10 10788 11344" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13091806..13096811) /note="source:INTACT127_F12_scaffold_6-int 1 4984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13096770..13096822 /note="source:CACAO_Mariner_E229_scaffold_9 1793 1844" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 13098074..13107964 /note="source:CACAO_M_S_E52921_F60_scaffold_5 6651 16547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13110971..13111397 /note="source:INTACT563_F255_scaffold_10-int 3 431" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13112491..13114567) /note="source:INTACT215F_F14_scaffold_3-int 10298 11539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13115533..13118446 /note="source:CACAO_M_E14215_F86_scaffold_3 1 2914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13119307..13119579 /note="source:INTACT88_F12_scaffold_4-int 11547 11817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13119579..13119628) /note="source:INTACT170_F12_scaffold_5-int 5773 5821" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13120292..13121218 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3533 4488" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13121210..13121345) /note="source:INTACT170_F12_scaffold_5-int 4639 4774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13121605..13122016) /note="source:CACAO_M_E870_F22_scaffold_1 1639 1972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13121939..13122607) /note="source:CACAO_Mariner_E229_scaffold_9 14053 14722" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 13122594..13124026 /note="source:INTACT265_F12_scaffold_7-int 11567 13062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13126569..13126677) /note="source:INTACT170_F12_scaffold_5-int 1918 2019" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13126793..13136489 /note="source:CACAO_M_S_E89200_F13_scaffold_8 501 10185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13137577..13137901) /note="source:CACAO_M_E65323_F12_scaffold_9 10439 10756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13138015..13138083 /note="source:CACAO_M_E42514_F40_scaffold_5 105 174" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13138042..13138095 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4116 4172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13138051..13138099) /note="source:scaffold_1_CACTA_0011 7460 7508" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13138455..13139230) /note="source:INTACT1443F_F12_scaffold_9-int 10190 10946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13139274..13139367) /note="source:CACAO_M_S_E119160_F14_scaffold_9 12425 12523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13139369..13140095) /note="source:CACAO_M_E36038_F90_scaffold_5 2694 3433" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(13141706..13159910) /locus_tag="TCM_013447" /note="dbxref CacaoGD:Thecc1EG013447" mRNA complement(join(13141706..13141733,13148239..13148643, 13149124..13149272,13149438..13150255,13151597..13151941, 13159898..13159910)) /locus_tag="TCM_013447" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023469t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400065776" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" mobile_element 13144080..13146435 /note="source:INTACT224_F176_scaffold_8-int 4139 6475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13144437..13147070) /note="source:CACAO_M_S_E109876_F7_scaffold_9 6925 9572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13147054..13151846 /note="source:INTACT224_F176_scaffold_8-int 7450 12224" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(13148289..13148643,13149124..13149272, 13149438..13149764)) /locus_tag="TCM_013447" /note="paralog of Thecc1EG023469t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21585.1" /db_xref="Phytozome:PGSC0003DMP400065776" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C4D9" /translation="MAHQLQGSTHGFTQLALSAPLIAASSDREAYGSRGRGPVTSSQS RLFVSGRQSSVDRGHARVFTLTPQEAQTSNVVVSVPFLFVIWMLEYCLILVQPIVLFH HVLHLDWVMDWLSPYHASVDCYHKLVRFDFPSEPSFSIQGDRNNAITNLIFVICTKRI KNENMPKTASQTRYEHYEFLVMSFGLTNGPAAFMDLMNRVFRPYLDKFVMVFIDDILI YSRSWAEHEQHLKIVLQTLREHQLYAKFSKCEFWLESVHSWDMWSLKVGYKLTQRKWR " mobile_element 13152819..13153529 /note="source:INTACT224_F176_scaffold_8-int 18341 19037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13153920..13154826 /note="source:CACAO_M_E24592_F195_scaffold_4 1457 2361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13154057..13156583) /note="source:INTACT1443F_F12_scaffold_9-int 8260 10752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13159012..13159915) /note="source:CACAO_M_E42395_F3_scaffold_5 845 1775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13160080..13160154) /note="source:scaffold_3_CACTA_0382 6367 6446" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13160487..13173471 /note="source:CACAO_M_E14227_F12_scaffold_3 1 12985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13173827..13176857) /note="source:scaffold_6_CACTA_0711 3580 6605" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13178210..13178556) /note="source:scaffold_1_CACTA_0011 5251 5594" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13182639..13183464) /note="source:INTACT224_F176_scaffold_8-int 5674 6496" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13184611..13187581 /note="source:CACAO_M_E13038_F22_scaffold_3 10686 13720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13187491..13187668) /note="source:INTACT242_F12_scaffold_1-int 2155 2332" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13187740..13190680) /note="source:CACAO_M_E57857_F33_scaffold_9 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13190702..13191158 /note="source:CACAO_M_E13038_F22_scaffold_3 7879 8286" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13191158..13191613) /note="source:INTACT183F_F349_scaffold_3-int 10292 10751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13191617..13193200 /note="source:CACAO_M_E13604_F90_scaffold_3 5430 7014" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13192915..13193416 /note="source:CACAO_M_E44899_F328_scaffold_6 2696 3067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13193710..13193723) /note="source:CACAO_M_E73087_F12_scaffold_10 10651 10663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13193724..13196621 /note="source:CACAO_M_E14250_F230_scaffold_3 1 2898" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13201462..13201993 /note="source:CACAO_M_E73087_F12_scaffold_10 6033 6576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13201993..13204016 /note="source:INTACT90_F13_scaffold_4-int 2047 4072" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13204015..13204057) /note="source:CACAO_M_E33213_F12_scaffold_4 1848 1880" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13208333..13209564) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3560 4774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13209962..13211449) /note="source:CACAO_M_S_E89272_F5_scaffold_8 6730 8219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13214894..13215250) /note="source:CACAO_M_S_E64832_F14_scaffold_5 3952 4309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13215244..13216529) /note="source:CACAO_M_E65323_F12_scaffold_9 9500 10742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13216528..13216722 /note="source:INTACT215F_F14_scaffold_3-int 11363 11549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13217046..13219716 /note="source:INTACT1421F_F389_scaffold_9-int 773 2673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13219717..13232521 /note="source:INTACT473_F7_scaffold_3-int 1 12805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13232522..13235881) /note="source:CACAO_M_S_E19200_F389_scaffold_3 3217 6580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13235882..13238651 /note="source:CACAO_M_E14263_F322_scaffold_3 1 2770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13238652..13242604 /note="source:INTACT1421F_F389_scaffold_9-int 6026 9919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13243181..13243705) /note="source:INTACT88_F12_scaffold_4-int 10453 10938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13243332..13244452) /note="source:INTACT563_F255_scaffold_10-int 16505 17649" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13243854..13248729 /note="source:INTACT597_F267_scaffold_2-int 8971 13910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13247874..13249556) /note="source:CACAO_M_E65323_F12_scaffold_9 9011 10741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13248726..13249936 /note="source:INTACT215F_F14_scaffold_3-int 10348 11549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13250759..13251277) /note="source:INTACT88_F12_scaffold_4-int 10459 10938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13251304..13253608) /note="source:CACAO_M_S_E119160_F14_scaffold_9 9545 13006" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13253602..13263456 /locus_tag="TCM_013457" /note="dbxref CacaoGD:Thecc1EG013457" mRNA join(13253602..13253623,13255499..13256369, 13263406..13263456) /locus_tag="TCM_013457" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045843t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 13255712..13256260 /locus_tag="TCM_013457" /note="paralog of Thecc1EG045843t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21586.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B5G7" /translation="MYPNIHEIIHGRQWSTFCKHPQAASMRIVREFYANAKEHTNRST FVQGKFVPFNTDAIDPYFDIPKAVIDEYNEYIIMEPNFNKVINYFFKSNKQWKMSKRL PLSFKNSQLYGAYKCCLYFIATRLLLMKHVTNITKDIALLLYYILTGKAINIGKLIYI TILFFANTPHEDIWFPSLITDL" mobile_element 13256458..13269189 /note="source:INTACT120_F22_scaffold_3-int 1 12732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13271377..13272238 /note="source:INTACT85_F9_scaffold_4-int 584 1450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13273817..13274337) /note="source:CACAO_M_E13604_F90_scaffold_3 10655 11159" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13274501..13275781) /note="source:CACAO_M_E13604_F90_scaffold_3 9402 10666" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13275778..13276543 /note="source:CACAO_M_E3248_F5_scaffold_1 18088 18851" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13278545..13278818 /note="source:CACAO_M_E58148_F12_scaffold_9 10174 10413" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13279628..13280043) /note="source:INTACT242_F12_scaffold_1-int 3295 3691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13280551..13281485) /note="source:CACAO_M_E65323_F12_scaffold_9 8594 9488" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13281411..13281558 /note="source:CACAO_Mariner_E229_scaffold_9 171 324" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(13281544..13282298) /note="source:CACAO_M_E3248_F5_scaffold_1 1653 2382" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13283214..13289898) /locus_tag="TCM_013461" /note="dbxref CacaoGD:Thecc1EG013461" mRNA complement(join(13283214..13283678,13284578..13284675, 13288361..13288442,13289886..13289898)) /locus_tag="TCM_013461" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(13283360..13283678,13284578..13284672)) /locus_tag="TCM_013461" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21587.1" /translation="MSVNRDVAAVVMGPREVPGRDILSSLNAYSTLLGDILNYVQSDG KKSDLNEGVYQKDEASFNTQFDDLFHDLDNNTILVSGEYEEVNAFVDVKHNEKDDVDE GVEREDEETEEDANKDDDDDEDENEENEFTVLDDD" mobile_element 13284609..13287443 /note="source:CACAO_M_E14276_F15_scaffold_3 1 2835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13290033..13291461 /note="source:INTACT85_F9_scaffold_4-int 1 1445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13293593..13293661 /note="source:CACAO_M_E33933_F9_scaffold_4 5338 5408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13293606..13294322) /note="source:CACAO_M_E10693_F272_scaffold_2 7037 7750" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13294323..13297210 /note="source:CACAO_M_E14280_F54_scaffold_3 1 2888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13297211..13298434 /note="source:INTACT1443F_F12_scaffold_9-int 724 1949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13299133..13300330) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3560 4756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13308072..13308119 /note="source:CACAO_Mariner_E229_scaffold_9 10889 10936" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(13309483..13315656) /note="source:CACAO_M_S_E102025_F12_scaffold_9 3979 10156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13315656..13316353) /note="source:INTACT215F_F14_scaffold_3-int 6921 7637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13316454..13317318) /note="source:CACAO_M_E11662_F12_scaffold_2 9447 10310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13317419..13317997 /note="source:CACAO_M_S_E6027_F12_scaffold_2 4056 4632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13317998..13318859) /note="source:INTACT1443F_F12_scaffold_9-int 2892 4031" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13318860..13321635 /note="source:CACAO_M_E14286_F15_scaffold_3 1 2776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13321636..13322654) /note="source:CACAO_M_S_E102025_F12_scaffold_9 2121 3145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13323329..13323718 /note="source:CACAO_M_E4063_F12_scaffold_2 4908 5299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13323836..13324303 /note="source:CACAO_M_S_E32752_F12_scaffold_4 3582 4050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13324718..13325455 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4141 4878" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13325452..13325647 /note="source:CACAO_M_E4063_F12_scaffold_2 5459 5659" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13328363..13331185 /note="source:CACAO_M_S_E19415_F78_scaffold_3 1 2823" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13333606..13336570) /locus_tag="TCM_013466" /note="dbxref CacaoGD:Thecc1EG013466" mRNA complement(join(13333606..13333653,13334803..13335655, 13336517..13336570)) /locus_tag="TCM_013466" /product="Inhibitor-3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s04540.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12742t00001" CDS complement(13335185..13335523) /locus_tag="TCM_013466" /codon_start=1 /product="Inhibitor-3" /protein_id="EOY21588.1" /translation="MARPTATSTTGRPSSSTSSVTTTVTIDDSGASSQPQETLVLELR PRKKKVTWKKGTVDNEFMNKKSSKICCVFHKEKPFDEDDSDDEGHDHHHHQPSNGRDC SKDSCTAIST" gene complement(13337070..13349477) /locus_tag="TCM_013468" /note="dbxref CacaoGD:Thecc1EG013468" mRNA complement(join(13337070..13338189,13338323..13338354, 13338882..13338976,13339095..13339168,13339253..13339388, 13339500..13339563,13339647..13339709,13339811..13339953, 13340071..13340330,13340458..13340623,13340739..13340861, 13342075..13342146,13342237..13342344,13342752..13342868, 13342946..13343084,13343401..13343507,13343826..13343935, 13344086..13344219,13344317..13344466,13344861..13345069, 13345154..13345836,13346334..13346366,13349002..13349477)) /locus_tag="TCM_013468" /product="Stabilizer of iron transporter SufD / Polynucleotidyl transferase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29677.m000188" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020717t2" /inference="similar to AA sequence:ricco:29677.m000188" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5558t1" mRNA complement(join(13337070..13338189,13338323..13338354, 13338882..13338976,13339095..13339168,13339253..13339388, 13339500..13339563,13339647..13339709,13339811..13339953, 13340071..13340330,13340458..13340623,13340739..13340861, 13342075..13342146,13342237..13342344,13342752..13342868, 13342946..13343084,13343401..13343507,13343826..13343935, 13344086..13344219,13344317..13344466,13344861..13345069, 13345154..13345836,13346325..13346674)) /locus_tag="TCM_013468" /product="Stabilizer of iron transporter SufD / Polynucleotidyl transferase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29677.m000188" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020717t2" /inference="similar to AA sequence:ricco:29677.m000188" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b013008t1a2; alternateUTRof:Thecc1EG013468t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5558t1" mRNA complement(join(13337408..13338189,13338323..13338354, 13338882..13338976,13339095..13339168,13339253..13339388, 13339500..13339563,13339647..13339709,13339811..13339953, 13340071..13340330,13340458..13340623,13340739..13340861, 13342075..13342146,13342237..13342344,13342752..13342868, 13342946..13343084,13343401..13343507,13343826..13343935, 13344086..13344219,13344317..13344466,13344861..13345069, 13345154..13345836,13346334..13346674)) /locus_tag="TCM_013468" /product="Stabilizer of iron transporter SufD / Polynucleotidyl transferase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29677.m000188" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020717t2" /inference="similar to AA sequence:ricco:29677.m000188" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5558t1; alternateUTRof:Thecc1EG013468t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5558t1" CDS complement(join(13337975..13338189,13338323..13338354, 13338882..13338976,13339095..13339168,13339253..13339388, 13339500..13339563,13339647..13339709,13339811..13339953, 13340071..13340330,13340458..13340623,13340739..13340861, 13342075..13342146,13342237..13342344,13342752..13342868, 13342946..13343084,13343401..13343507,13343826..13343935, 13344086..13344219,13344317..13344466,13344861..13345069, 13345154..13345828)) /locus_tag="TCM_013468" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29677.m000188; paralog of Thecc1EG020717t2" /codon_start=1 /product="Stabilizer of iron transporter SufD / Polynucleotidyl transferase isoform 1" /protein_id="EOY21589.1" /db_xref="TAIR:AT1G48410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04379" /translation="MVRKKKSDAASAGGESSQSQDTGVGSGRGLPRHPQQQGGGGGGG YQAGRGWAPQSQQAGRGGYGGGGGGGGRGRGVSQQQFAGGPPEYQGRGRGGPSQQGGR GGYGSGRGGGSRGGGSFPGGSSRPPVPELHQATLSFQAAVTPQPAPSEAGSSSGPHDY APLVQQVQQLSIQQETSQAVQPVPPSSKSVRFPLRPGKGCTGIKCIVKANHFFAELPD KDLHQYDVTITPEVTSRGVNRAVMGQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFV SKEFKITLIDEDDGSGVPRREREFRVVIKLAARADLHHLGLFLQGKQADAPQEALQVL DIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMS STAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRI SGLTSQATRELTFPVDDRGTMKSVVEYFYETYGFIIQHTQWPCLQVGNQQRPNYLPME VCKIVEGQRYSKRLNERQITALLKVTCQRPQEREYDIMKTVHHNAYHEDPYAKEFGIK ISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFS RQVQDSVARGFCYELAQMCYISGMAFTPEPVLPPISARPEQVEKVLKTRYHDAMTKLQ PQNKELDLLIVILPDNNGSLYGDLKRICETDLGIVSQCCLTKHVYKMSKQYLANVALK INVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWP EVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIKELLISFRRATGQKPQRII FYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDR NAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADAL QSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTAAGRGG VGGARSTRGPGASAAVRPLPALKENVKRVMFYC" CDS complement(join(13337975..13338189,13338323..13338354, 13338882..13338976,13339095..13339168,13339253..13339388, 13339500..13339563,13339647..13339709,13339811..13339953, 13340071..13340330,13340458..13340623,13340739..13340861, 13342075..13342146,13342237..13342344,13342752..13342868, 13342946..13343084,13343401..13343507,13343826..13343935, 13344086..13344219,13344317..13344466,13344861..13345069, 13345154..13345828)) /locus_tag="TCM_013468" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29677.m000188; paralog of Thecc1EG020717t2" /codon_start=1 /product="Stabilizer of iron transporter SufD / Polynucleotidyl transferase isoform 1" /protein_id="EOY21590.1" /db_xref="TAIR:AT1G48410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04379" /translation="MVRKKKSDAASAGGESSQSQDTGVGSGRGLPRHPQQQGGGGGGG YQAGRGWAPQSQQAGRGGYGGGGGGGGRGRGVSQQQFAGGPPEYQGRGRGGPSQQGGR GGYGSGRGGGSRGGGSFPGGSSRPPVPELHQATLSFQAAVTPQPAPSEAGSSSGPHDY APLVQQVQQLSIQQETSQAVQPVPPSSKSVRFPLRPGKGCTGIKCIVKANHFFAELPD KDLHQYDVTITPEVTSRGVNRAVMGQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFV SKEFKITLIDEDDGSGVPRREREFRVVIKLAARADLHHLGLFLQGKQADAPQEALQVL DIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMS STAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRI SGLTSQATRELTFPVDDRGTMKSVVEYFYETYGFIIQHTQWPCLQVGNQQRPNYLPME VCKIVEGQRYSKRLNERQITALLKVTCQRPQEREYDIMKTVHHNAYHEDPYAKEFGIK ISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFS RQVQDSVARGFCYELAQMCYISGMAFTPEPVLPPISARPEQVEKVLKTRYHDAMTKLQ PQNKELDLLIVILPDNNGSLYGDLKRICETDLGIVSQCCLTKHVYKMSKQYLANVALK INVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWP EVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIKELLISFRRATGQKPQRII FYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDR NAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADAL QSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTAAGRGG VGGARSTRGPGASAAVRPLPALKENVKRVMFYC" CDS complement(join(13337975..13338189,13338323..13338354, 13338882..13338976,13339095..13339168,13339253..13339388, 13339500..13339563,13339647..13339709,13339811..13339953, 13340071..13340330,13340458..13340623,13340739..13340861, 13342075..13342146,13342237..13342344,13342752..13342868, 13342946..13343084,13343401..13343507,13343826..13343935, 13344086..13344219,13344317..13344466,13344861..13345069, 13345154..13345828)) /locus_tag="TCM_013468" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29677.m000188; paralog of Thecc1EG020717t2" /codon_start=1 /product="Stabilizer of iron transporter SufD / Polynucleotidyl transferase isoform 1" /protein_id="EOY21591.1" /db_xref="TAIR:AT1G48410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04379" /translation="MVRKKKSDAASAGGESSQSQDTGVGSGRGLPRHPQQQGGGGGGG YQAGRGWAPQSQQAGRGGYGGGGGGGGRGRGVSQQQFAGGPPEYQGRGRGGPSQQGGR GGYGSGRGGGSRGGGSFPGGSSRPPVPELHQATLSFQAAVTPQPAPSEAGSSSGPHDY APLVQQVQQLSIQQETSQAVQPVPPSSKSVRFPLRPGKGCTGIKCIVKANHFFAELPD KDLHQYDVTITPEVTSRGVNRAVMGQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFV SKEFKITLIDEDDGSGVPRREREFRVVIKLAARADLHHLGLFLQGKQADAPQEALQVL DIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMS STAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRI SGLTSQATRELTFPVDDRGTMKSVVEYFYETYGFIIQHTQWPCLQVGNQQRPNYLPME VCKIVEGQRYSKRLNERQITALLKVTCQRPQEREYDIMKTVHHNAYHEDPYAKEFGIK ISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFS RQVQDSVARGFCYELAQMCYISGMAFTPEPVLPPISARPEQVEKVLKTRYHDAMTKLQ PQNKELDLLIVILPDNNGSLYGDLKRICETDLGIVSQCCLTKHVYKMSKQYLANVALK INVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWP EVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIKELLISFRRATGQKPQRII FYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDR NAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADAL QSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTAAGRGG VGGARSTRGPGASAAVRPLPALKENVKRVMFYC" mRNA complement(join(<13339094..13339168,13339253..13339388, 13339500..13339563,13339638..13339709,13339811..13339953, 13340071..13340330,13340458..13340623,13340739..13340861, 13342075..13342146,13342237..13342344,13342752..13342868, 13342946..13343084,13343401..13343507,13343826..13343935, 13344086..13344219,13344317..13344463,13344861..13345069, 13345154..13345616,13345630..13345836,13346334..13346676)) /locus_tag="TCM_013468" /product="Argonaute 1B isoform 4" /inference="alignment:exonerate- protein:2:ricco:29677.m000188" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020717t2" /inference="similar to AA sequence:Phytozome:GSVIVT01029383001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc50t15; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5558t1" CDS complement(join(<13339095..13339168,13339253..13339388, 13339500..13339563,13339638..13339709,13339811..13339953, 13340071..13340330,13340458..13340623,13340739..13340861, 13342075..13342146,13342237..13342344,13342752..13342868, 13342946..13343084,13343401..13343507,13343826..13343935, 13344086..13344219,13344317..13344463,13344861..13345021)) /locus_tag="TCM_013468" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG020717t2" /codon_start=1 /product="Argonaute 1B isoform 4" /protein_id="EOY21592.1" /db_xref="Phytozome:GSVIVT01029383001" /db_xref="TAIR:AT1G48410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XSA2" /translation="MGQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFVSKEFKITLI DEDDGSGVPREREFRVVIKLAARADLHHLGLFLQGKQADAPQEALQVLDIVLRELPTT RYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPV IDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRE LTFPVDDRGTMKSVVEYFYETYGFIIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRY SKRLNERQITALLKVTCQRPQEREYDIMKTVHHNAYHEDPYAKEFGIKISEKLASVEA RILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRQVQDSVARG FCYELAQMCYISGMAFTPEPVLPPISARPEQVEKVLKTRYHDAMTKLQPQNKELDLLI VILPDNNGSLYGDLKRICETDLGIVSQCCLTKHVYKMSKQYLANVALKINVKVGGRNT VLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVC AQAHRQELIQDLYKTWQDPVRGTVSGGMIKELLISFRRATGQKPQRIIFYRHFKDGVS EGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDRNAVDKSG NILPGTVVDSKICHPTEFDFYLCSHAGIQ" mobile_element 13348710..13348784 /note="source:CACAO_M_E43348_F5_scaffold_5 3689 3765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13351773..13351926) /note="source:INTACT242_F12_scaffold_1-int 1778 1935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13354813..13354930) /note="source:CACAO_M_E58962_F13_scaffold_9 224 338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13354936..13355103) /note="source:INTACT266_F12_scaffold_7-int 120 284" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13356546..13356653) /note="source:CACAO_M_E3667_F12_scaffold_1 9932 10021" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13356559..13356664 /note="source:INTACT196F_F12_scaffold_3-int 9204 9320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13356883..13356913) /note="source:CACAO_M_S_E118676_F14_scaffold_9 12586 12616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13357002..13359952 /note="source:CACAO_M_E887_F143_scaffold_1 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13361461..13361552) /note="source:INTACT242_F12_scaffold_1-int 3303 3391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13361746..13361952) /note="source:INTACT242_F12_scaffold_1-int 2947 3139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13372632..13372750) /note="source:CACAO_M_E84908_F12_scaffold_10 3991 4116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13373303..13373384) /note="source:INTACT242_F12_scaffold_1-int 3313 3391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13374292..13374401 /note="source:CACAO_M_E14347_F12_scaffold_3 8769 8833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13374394..13374454) /note="source:CACAO_M_E84908_F12_scaffold_10 2988 3048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13375619..13388828 /note="source:INTACT262_F12_scaffold_3-int 1 13210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13388974..13389022) /note="source:INTACT296_F13_scaffold_9-int 13172 13221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13390792..13390896) /note="source:INTACT189_F49_scaffold_5-int 17794 17902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13391062..13391178) /note="source:INTACT189_F49_scaffold_5-int 17606 17717" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13394080..13401498) /locus_tag="TCM_013473" /note="dbxref CacaoGD:Thecc1EG013473" mRNA complement(join(13394080..13394499,13396876..13397156, 13401474..13401498)) /locus_tag="TCM_013473" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003266t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(13394135..13394476) /locus_tag="TCM_013473" /note="paralog of Thecc1EG003266t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21593.1" /translation="MRHFIIANYYQTWKQIENGPYKIEKDMANSNSHDLDLIALNANT MHTILSALCERQCDQVQDNESAKEIWDKLDELYGQPLEKELEKDDLLDESSPSVTKRI SNFRFQDQTMR" mobile_element 13412595..13423928 /note="source:INTACT584_F15_scaffold_3-int 1 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13419859..13423947 /locus_tag="TCM_013479" /note="dbxref CacaoGD:Thecc1EG013479" mRNA join(13419859..13420306,13420391..13420430, 13423809..13423947) /locus_tag="TCM_013479" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene24242.25" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039670t1" /inference="similar to AA sequence:Phytozome:Glyma01g20680.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc608t395_G3" CDS join(13419967..13420306,13420391..13420430, 13423809..13423926) /locus_tag="TCM_013479" /note="paralog of Thecc1EG039670t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21594.1" /db_xref="Phytozome:Glyma01g20680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AGW4" /translation="MLRACVIDFIGSWDRHLPLVEFAYNNSFQSSIGMAPYEALYGRK CRTPLCWDEVGERKLVRVELIELTNDKIKVIRERLKVAQDRQKSYADKRRKDLEFEID DKVFLKVSPWKGVIRFAKRGKLNPRKGKKLICKPCGVPVGIPDNECQSGRRGDCHGPE GGSGS" gene 13435859..13458767 /locus_tag="TCM_013481" /note="dbxref CacaoGD:Thecc1EG013481" mRNA join(13435859..13435979,13457832..13458111, 13458470..13458767) /locus_tag="TCM_013481" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010216t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element 13436042..13446285 /note="source:INTACT28_F14_scaffold_3-int 1 10244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13446493..13446557) /note="source:CACAO_M_S_E89272_F5_scaffold_8 10936 11000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13448003..13455641 /note="source:INTACT744_F319_scaffold_3-int 1 7639" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(13457871..13458111,13458470..13458609) /locus_tag="TCM_013481" /note="paralog of Thecc1EG010216t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21595.1" /translation="MGKRILVTQGLLDRILHLLVQQRDYGYVFDDVELRSMFVYPHPS DKGLSSAKRLSFYDKVLHLIITHIIQRQGFNYSIVIVSIFLPPLPLMLSEPLLDSFME TTKSRLTSCVDAFEAHSHKMLQCL" mobile_element complement(13459312..13459369) /note="source:CACAO_M_E3884_F22_scaffold_1 13119 13176" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13460315..13462029) /note="source:CACAO_M_S_E4413_F3_scaffold_1 16878 18561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13462371..13462463 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3189 3281" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13462403..13467574) /locus_tag="TCM_013483" /note="dbxref CacaoGD:Thecc1EG013483" mRNA complement(join(13462403..13462770,13463439..13463610, 13464263..13464507,13465255..13465387,13466148..13466263, 13467408..13467574)) /locus_tag="TCM_013483" /product="Aminoadipate-semialdehyde dehydrogenase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001002001" /inference="similar to AA sequence:Phytozome:POPTR_0010s24500.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc467t10; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc467t10" mRNA complement(join(13462403..13462787,13463439..13463610, 13464263..13464507,13465255..13465387,13466148..13466263, 13467408..13467574)) /locus_tag="TCM_013483" /product="Aminoadipate-semialdehyde dehydrogenase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001002001" /inference="similar to AA sequence:Phytozome:GSVIVT01001002001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc467t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc467t10; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc284t11" CDS complement(join(13462591..13462770,13463439..13463610, 13464263..13464507,13465255..13465387,13466148..13466263, 13467408..13467410)) /locus_tag="TCM_013483" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Aminoadipate-semialdehyde dehydrogenase, putative isoform 1" /protein_id="EOY21596.1" /db_xref="Phytozome:POPTR_0010s24500.1" /translation="MMEKGVQRWVVDISTWDPSTDDFSYALSLLPQHHHSSITRFVKK DDRKRALISWLLQYALVHEVLGIPYHEIVIKRTLEGKPFLECGRVCLDFPNFNFNVSH HGDYVAIASEPLCLVGLDIVSHVIPEKETVLEFIQNFSSCFSSLEWDQIVTAGSNDEV LTELYRYWCLKEAYVKATGSGLAYGLHKVEFYHTSWTDISVKVDGVRNAQWRFWLSEL GKGHYVSIARGHPISATESYKRTLNQTKFNEEEYNEGLLLPNVSFVWRTVEELFLVIH KAKSSC" CDS complement(join(13462713..13462787,13463439..13463610, 13464263..13464507,13465255..13465387,13466148..13466263, 13467408..13467410)) /locus_tag="TCM_013483" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Aminoadipate-semialdehyde dehydrogenase, putative isoform 2" /protein_id="EOY21597.1" /db_xref="Phytozome:GSVIVT01001002001" /translation="MMEKGVQRWVVDISTWDPSTDDFSYALSLLPQHHHSSITRFVKK DDRKRALISWLLQYALVHEVLGIPYHEIVIKRTLEGKPFLECGRVCLDFPNFNFNVSH HGDYVAIASEPLCLVGLDIVSHVIPEKETVLEFIQNFSSCFSSLEWDQIVTAGSNDEV LTELYRYWCLKEAYVKATGSGLAYGLHKVEFYHTSWTDISVKVDGVRNAQWRFWLSEL GKGHYLFLNFRYQLQEVTQYRPLRVTREH" mobile_element 13468255..13470637 /note="source:CACAO_Again_on_E79_scaffold_3 1 2383" /mobile_element_type="transposon:TIR/hAT" mobile_element 13471949..13474368 /note="source:CACAO_M_S_E2040_F42_scaffold_1 1 2423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13474469..13475138 /note="source:CACAO_M_S_E2040_F42_scaffold_1 2449 3117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13475066..13475150) /note="source:CACAO_M_E12297_F14_scaffold_3 13998 14078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13475321..13475417) /note="source:CACAO_M_E58148_F12_scaffold_9 10858 10933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13475768..13475909) /note="source:CACAO_M_E12463_F12_scaffold_3 5376 5511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13475893..13477454) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18937 20466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13477976..13478599) /note="source:CACAO_M_S_E4591_F5_scaffold_1 17896 18519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13479105..13479228 /note="source:CACAO_M_E5193_F22_scaffold_2 8987 9197" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13479939..13480869 /note="source:CACAO_M_S_E84261_F4_scaffold_6 1 934" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13480870..13504159 /note="source:CACAO_M_E14312_F12_scaffold_3 1 23290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13504160..13505089) /note="source:INTACT167_F5_scaffold_2-int 3834 4763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13507533..13510652 /note="source:CACAO_M_S_E19454_F51_scaffold_3 1 3120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13512122..13512184 /note="source:CACAO_M_S_E89272_F5_scaffold_8 10935 10998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13515101..13519300 /note="source:INTACT738_F9_scaffold_7-int 1 4178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13519305..13522293 /note="source:CACAO_M_E14320_F89_scaffold_3 1 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13522299..13522865) /note="source:INTACT630_F9_scaffold_5-int 2319 2808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13522864..13523750) /note="source:CACAO_M_E5899_F5_scaffold_2 21831 22691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13524691..13524750) /note="source:scaffold_3_CACTA_0382 1861 1921" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13524703..13524771 /note="source:scaffold_3_CACTA_0382 1861 1923" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13524751..13524767) /note="source:CACAO_M_E5899_F5_scaffold_2 20727 20732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13525633..13527515) /note="source:CACAO_M_E69760_F9_scaffold_9 457 2335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13527683..13527864 /note="source:scaffold_3_CACTA_0382 10027 10205" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13529102..13529344 /note="source:CACAO_M_E73087_F12_scaffold_10 9130 9320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13529115..13529495) /note="source:INTACT39F_F22_scaffold_1-int 3127 3419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13529476..13529532) /note="source:CACAO_M_S_E64608_F12_scaffold_5 4009 4065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13530086..13532036) /note="source:CACAO_M_E5378_F96_scaffold_2 5945 7898" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13530432..13544186 /locus_tag="TCM_013491" /note="dbxref CacaoGD:Thecc1EG013491" mRNA join(13530432..13530782,13530951..13531057, 13531214..13531450,13531668..13532048,13544153..13544186) /locus_tag="TCM_013491" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038821t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS join(13530703..13530782,13530951..13531057, 13531214..13531450,13531668..13532044) /locus_tag="TCM_013491" /note="paralog of Thecc1EG038821t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21598.1" /translation="MMAARMDDIQKIVEGRPTVQESPSSQGVRSVELVLFRLEDVAQE WYRSLCRGKPTDAAPLTWIAIEEMKIQRFVDGLVEPLFRAVAALDFNTYFAAVDCTQL IEMRTSESRVVKDRAKRAKTEGYQGRRDFSSCISSSSRQGGIASMAYQSQVSARGSNQ PTSSAPLVATSSDYEASGSRGRGAVTSSQGRPSRSGRQSSIGRAQVRVYALTPKEAQT FNAVVSGTLSVYNMDARVLFDPGATHSFISPCFALRLGKDCVRREELS" mobile_element complement(13532037..13535191) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 9000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13535188..13538208) /note="source:CACAO_M_E5378_F96_scaffold_2 2928 5953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13538209..13539253 /note="source:CACAO_M_S_E146165_F12_scaffold_12 9076 10133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13539254..13544069 /note="source:INTACT601_F12_scaffold_10-int 5633 14446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13544038..13544075) /note="source:scaffold_3_CACTA_0382 11840 11876" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13545668..13545965) /note="source:CACAO_M_E5899_F5_scaffold_2 20436 20631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13545954..13546009) /note="source:CACAO_M_S_E64608_F12_scaffold_5 4010 4065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13545997..13546025 /note="source:INTACT1826F_F12_scaffold_15-int 9666 9694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13546700..13547167) /note="source:INTACT558_F9_scaffold_9-int 3 476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13550705..13550799 /note="source:CACAO_M_S_E65068_F306_scaffold_5 6026 6123" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13551688..13552286 /note="source:CACAO_M_E3248_F5_scaffold_1 1806 2382" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13552388..13553028) /note="source:INTACT170_F12_scaffold_5-int 5311 5946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13553415..13553584 /note="source:INTACT88_F12_scaffold_4-int 12388 12555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13554469..13554733 /note="source:INTACT39F_F22_scaffold_1-int 6919 7189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13554724..13554809) /note="source:INTACT265_F12_scaffold_7-int 12976 13067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13557596..13558186 /note="source:CACAO_M_E870_F22_scaffold_1 1380 1972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13560152..13560244 /note="source:CACAO_M_S_E64832_F14_scaffold_5 12578 12675" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13560589..13577688) /locus_tag="TCM_013493" /note="dbxref CacaoGD:Thecc1EG013493" mRNA complement(join(13560589..13560619,13571023..13571777, 13571955..13572041,13574671..13574725,13577680..13577688)) /locus_tag="TCM_013493" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.20 coverage" mobile_element 13561788..13563415 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3011 4706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13565350..13565805 /note="source:CACAO_M_E52278_F17_scaffold_7 3445 3897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13566552..13566969) /note="source:INTACT88_F12_scaffold_4-int 12720 13124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13567788..13567866 /note="source:CACAO_M_E5899_F5_scaffold_2 21632 21713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13569739..13570322 /note="source:INTACT518_F239_scaffold_2-int 2495 3073" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(13571623..13571777,13571955..13572041, 13574671..13574689)) /locus_tag="TCM_013493" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21599.1" /translation="MVHYDVAQNFNYEIVFATSGIRLHVMDLYRLCEHLDPMMLRSRY VCRGRAQNCEKCFSLMFHFGMSNYQGRVLDKGKQRLNCASDA" mobile_element 13572092..13572645 /note="source:INTACT518_F239_scaffold_2-int 4834 5385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13573187..13573962 /note="source:CACAO_M_E9571_F13_scaffold_2 8600 9373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13575123..13575541) /note="source:INTACT88_F12_scaffold_4-int 12720 13124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13577302..13577342) /note="source:INTACT170_F12_scaffold_5-int 6788 6822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13577332..13578893 /note="source:CACAO_M_E33282_F13_scaffold_4 10326 11864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13578536..13579694) /note="source:INTACT215F_F14_scaffold_3-int 9567 10707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13581511..13584275) /note="source:INTACT518_F239_scaffold_2-int 2495 5250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13584329..13585903 /note="source:CACAO_M_E33282_F13_scaffold_4 10326 11893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13585765..13586580) /note="source:scaffold_1_CACTA_0011 6543 7348" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13586581..13586595) /note="source:INTACT215F_F14_scaffold_3-int 9561 9632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13590595..13593455 /note="source:CACAO_M_E71526_F33_scaffold_10 1 2862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13593869..13601152) /note="source:scaffold_5_CACTA_0613 3607 10790" /mobile_element_type="transposon:TIR/CACTA" gene complement(13596586..13600618) /locus_tag="TCM_013496" /note="dbxref CacaoGD:Thecc1EG013496" mRNA complement(join(13596586..13596902,13596996..13597425, 13597519..13597618,13597911..13598012,13598098..13598292, 13599519..13599893,13599974..13600618)) /locus_tag="TCM_013496" /product="Transposon-like protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400027533.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018582t1" /inference="similar to AA sequence:Phytozome:Glyma15g21480.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS complement(join(13596901..13596902,13596996..13597425, 13597519..13597618,13597911..13598012,13598098..13598292, 13599519..13599893,13599974..13600386)) /locus_tag="TCM_013496" /note="paralog of Thecc1EG018582t1" /codon_start=1 /product="Transposon-like protein" /protein_id="EOY21600.1" /db_xref="Phytozome:Glyma15g21480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2I5F1" /translation="MYHHLTSDGFIRNEFENGVNEFIHFARSKSTFMWENKIRCPCSR CSNNKFLNFDKVTEHILKKDFTGAYTIWSLHRKHDVGQSSRSRDRVEPYATNGEDGEY GEPTYEEEIENLYTRMVRDAMGPEVVFNYNHDNESRLHKAHNAFNCVTTLNVKSEFNL SESCFDRLLEIRKNMLPSDETLPTDFYRMKKKVAKLGLGYIKIHACKNNCMLFYKETA NFEHCMICGHPRYKLRKSSVKRQKKIPYKILRYLPLIPRLQRLYIDLSATKIPVDHME ALEGKICETICKLEKIFPPNFFDSVEHLPIHLPYEAKVGGPTQYRWMYPFERFLQHLK KKVKNRAFVEGSICKAYIIEEISLFCSWILDEMVKRDSVHISEDELEKVRDARFMKWF KNYVVNRKDEIDPRIFEISHGLGCMIRCYKSYFVNGFKFHTLDYRQNRTIMNSGVCKK WSFYNDYEHDFYGILVDIMELEYFRIRNRVVLFKCHWFNTEKGIKVDPLHGLIEIKHN SILATNEPLVLAAQAHQVFYSSYPSTKRDR" mobile_element 13601122..13601266 /note="source:INTACT199_F5_scaffold_6-int 8449 8586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13601315..13607189 /note="source:CACAO_M_E45234_F22_scaffold_6 247 6097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13607190..13613414) /note="source:INTACT196F_F12_scaffold_3-int 3965 15492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13613420..13616337) /note="source:INTACT196F_F12_scaffold_3-int 15 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13616308..13616486) /note="source:CACAO_M_E59093_F12_scaffold_9 13209 13377" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13617935..13618312) /note="source:CACAO_M_E35674_F13_scaffold_5 3312 3671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13618353..13620449) /note="source:INTACT73_F14_scaffold_4-int 1 2081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13620453..13620742) /note="source:CACAO_Mutator_E206_scaffold_1 5674 5964" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(13623823..13623861) /note="source:CACAO_M_E5899_F5_scaffold_2 4558 4600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13623862..13624165 /note="source:CACAO_M_E57309_F15_scaffold_8 1 304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13624266..13624571 /note="source:CACAO_M_E42514_F40_scaffold_5 10638 10943" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13624807..13625591) /note="source:CACAO_M_E33870_F15_scaffold_4 1428 2212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13626466..13627010) /note="source:CACAO_M_E84129_F15_scaffold_10 1 545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13628515..13628768) /note="source:CACAO_Mutator_E206_scaffold_1 7564 7826" /mobile_element_type="transposon:TIR/Mutator" mobile_element 13630807..13631018 /note="source:CACAO_M_S_E119615_F3_scaffold_9 17329 17539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13631019..13632549 /note="source:CACAO_M_S_E19485_F17_scaffold_3 1 1531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13632550..13633146) /note="source:CACAO_M_S_E4413_F3_scaffold_1 17758 18355" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13635141..13636360) /note="source:CACAO_M_E84129_F15_scaffold_10 1 1207" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13636361..13637249 /note="source:CACAO_M_S_E119615_F3_scaffold_9 18137 19009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13638613..13640472 /note="source:CACAO_M_E14344_F4_scaffold_3 1 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13644906..13645306) /note="source:CACAO_M_E34540_F17_scaffold_5 9789 10179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13645307..13648041 /note="source:INTACT524_F2_scaffold_3-int 896 3459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13648017..13649096 /note="source:CACAO_M_S_E89272_F5_scaffold_8 8781 9843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13649422..13651536 /note="source:CACAO_M_E71671_F17_scaffold_10 7037 9138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13651533..13652735) /note="source:INTACT741_F17_scaffold_3-int 487 1661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13653260..13657160) /note="source:INTACT741_F17_scaffold_3-int 5034 8873" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13655708..13656612) /locus_tag="TCM_013502" /note="dbxref CacaoGD:Thecc1EG013502" mRNA complement(13655708..13656612) /locus_tag="TCM_013502" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045843t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage" CDS complement(13655941..13656405) /locus_tag="TCM_013502" /note="paralog of Thecc1EG045843t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21601.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B5G7" /translation="MIDKRPWQNFCASLAATNIPLVREFYANAVEATYDFVFGRSKLV PFSSHAINEFYETTDIKSNGYGQYLGEHEDWDDIIHILYEESAQCRFFNNTPVSFKKN VMKPTYKIWLYFVASKLLPTTHTSNVMKDRAIPIHSIMIGCTIDIGHIFYKP" mobile_element 13673833..13677506 /note="source:CACAO_M_E14347_F12_scaffold_3 15886 19559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13677797..13679850) /note="source:CACAO_M_E3326_F17_scaffold_1 5219 7257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13679853..13684938 /note="source:INTACT267_F13_scaffold_2-int 1 5254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13684910..13685747 /note="source:CACAO_M_E44720_F256_scaffold_6 166 1003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13685748..13689521) /note="source:CACAO_M_E3326_F17_scaffold_1 1456 5224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13689515..13690132 /note="source:CACAO_M_S_E64832_F14_scaffold_5 1929 2547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13690244..13690374) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3119 3253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13690270..13690376 /note="source:CACAO_M_S_E64832_F14_scaffold_5 2824 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13690401..13691063 /note="source:CACAO_M_S_E64832_F14_scaffold_5 3651 4314" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13691059..13692499) /note="source:CACAO_M_E34540_F17_scaffold_5 10318 11806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13694166..13695408) /note="source:CACAO_M_E43348_F5_scaffold_5 19388 20659" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13694838..13696785) /note="source:scaffold_4_CACTA_0489 5919 7906" /mobile_element_type="transposon:TIR/CACTA" gene 13707891..13730137 /locus_tag="TCM_013507" /note="dbxref CacaoGD:Thecc1EG013507" mRNA join(13707891..13708253,13708351..13708483, 13708576..13708730,13708903..13709095,13709200..13709318, 13709427..13709643,13709747..13709842,13709937..13710110, 13711180..13711296,13711397..13711563,13711679..13711903, 13711977..13712543,13712677..13712815,13712889..13713177, 13728578..13728877,13729966..13730137) /locus_tag="TCM_013507" /product="Sucrose synthase 6 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29660.m000761.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017585t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05540.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1656t2" CDS join(13708153..13708253,13708351..13708483, 13708576..13708730,13708903..13709095,13709200..13709318, 13709427..13709643,13709747..13709842,13709937..13710110, 13711180..13711296,13711397..13711563,13711679..13711903, 13711977..13712543,13712677..13712815,13712889..13713071) /locus_tag="TCM_013507" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017585t1" /codon_start=1 /product="Sucrose synthase 6 isoform 1" /protein_id="EOY21602.1" /db_xref="Phytozome:POPTR_0015s05540.1" /db_xref="TAIR:AT1G73370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T3H2" /translation="MDSRQPLKRSDTIAESMPDALRQSTYHMKRCFSRLVATGKRLLK RQLLMEEVEKSIEDKVERSKILEGLIGFIVISTQEAAVVPPYIAFAVRPNPGFWEFVK VNSEDLHVDAINASEYLKFKEMIFDQNWSNDENALEIDFAAINYNSPHLTLPSSIGNG VSYISKFMFSKLWESSESSRPLLDYLLALNHQGEDLLINETLDTVAKLKTALLTANNV ISALPKETPYKNFEQRLKELGFEKGWGHNAERVQETMMTLSEVLQTPEPAKLESLFSW LPTVFGIVILSPHGYFGQSDVLGLPDTGGQVVYILDQVKALEEALLLRFKQQGLAVKP QILVVTRLIPDARGTKCNQELEPIINTKHSHILRVPFQTDNGVLQQWVSRFDIYPYLE KFAQDAVAKILEHMECKPDLIIGNYSDGNLVASLMARKLGITQGTIAHALEKTKYEDS DVKWKELEAKYHFSCQFTADIIAMNATDFIITSTYQEIAGSKEKPGQYESHAAFTMPG LHRVVSGINIFDPKFNIVAPGADQSVYFPYTEKKRRLSSFHPAIEELLYSQNDNNEHI GFLADRSKPIIFSMARLDTVKNITGLTEWYGKNKRLRDLVNLVVVAGFFDPSKSNDRE EQAEIKRMHQLMEQYRLRGQFRWIAAQTDRLRNGELYRCIADTKGAFVQPALYEAFGL TVIEAMNCGLPTFATNKGGPAEIIVDGASGFHIDPNNGDKSSNIIADFFDKCRTDAEH WKRVSAAGLHRIQECYTWEIYANKLLNMGSIYGFWRQLNKEQNLTKQRYIQLLYNLQF RNLARTVPIPREQAQVHLPLPISKPQQSTVLDAPAEPQQIPPLVVSDEGPQPAAETSR TRHAI" mRNA join(13708969..13709095,13709200..13709318, 13709427..13709643,13709747..13709842,13709937..13710110, 13711180..13711296,13711397..13711563,13711679..13711903, 13711977..13712543,13712677..13712815,13712889..13713058, 13713798..13714009) /locus_tag="TCM_013507" /product="Sucrose synthase 6 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29660.m000761.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017585t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05540.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1656t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1656t2" CDS join(13709015..13709095,13709200..13709318, 13709427..13709643,13709747..13709842,13709937..13710110, 13711180..13711296,13711397..13711563,13711679..13711903, 13711977..13712543,13712677..13712815,13712889..13713058, 13713798..13713915) /locus_tag="TCM_013507" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017585t1" /codon_start=1 /product="Sucrose synthase 6 isoform 2" /protein_id="EOY21603.1" /db_xref="Phytozome:POPTR_0015s05540.1" /db_xref="TAIR:AT1G73370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T3H2" /translation="MFSKLWESSESSRPLLDYLLALNHQGEDLLINETLDTVAKLKTA LLTANNVISALPKETPYKNFEQRLKELGFEKGWGHNAERVQETMMTLSEVLQTPEPAK LESLFSWLPTVFGIVILSPHGYFGQSDVLGLPDTGGQVVYILDQVKALEEALLLRFKQ QGLAVKPQILVVTRLIPDARGTKCNQELEPIINTKHSHILRVPFQTDNGVLQQWVSRF DIYPYLEKFAQDAVAKILEHMECKPDLIIGNYSDGNLVASLMARKLGITQGTIAHALE KTKYEDSDVKWKELEAKYHFSCQFTADIIAMNATDFIITSTYQEIAGSKEKPGQYESH AAFTMPGLHRVVSGINIFDPKFNIVAPGADQSVYFPYTEKKRRLSSFHPAIEELLYSQ NDNNEHIGFLADRSKPIIFSMARLDTVKNITGLTEWYGKNKRLRDLVNLVVVAGFFDP SKSNDREEQAEIKRMHQLMEQYRLRGQFRWIAAQTDRLRNGELYRCIADTKGAFVQPA LYEAFGLTVIEAMNCGLPTFATNKGGPAEIIVDGASGFHIDPNNGDKSSNIIADFFDK CRTDAEHWKRVSAAGLHRIQECYTWEIYANKLLNMGSIYGFWRQLNKEQNLTKQRYIQ LLYNLQFRNLARTVPIPREQAQVHLPLPISKPQQSTVLDAPAEPQQIPPLVVSDEGPQ PAAETSRTRVKSLQRKKTSYFHRLCFIVGYLLLIYYVLRKLYYKFTW" mobile_element 13714457..13715563 /note="source:CACAO_M_E14356_F22_scaffold_3 1 1107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13715790..13716547) /note="source:CACAO_M_E42395_F3_scaffold_5 1023 1771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13718333..13718390) /note="source:CACAO_M_E44503_F22_scaffold_6 1040 1097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13718345..13720313 /note="source:scaffold_6_CACTA_0709 4047 6065" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13720978..13721728) /note="source:CACAO_M_E42395_F3_scaffold_5 1023 1771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13722624..13723454 /note="source:CACAO_M_E43348_F5_scaffold_5 3690 4499" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13723448..13723679 /note="source:CACAO_M_E43348_F5_scaffold_5 4757 4991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13723867..13725740 /note="source:CACAO_M_E48538_F49_scaffold_6 12212 14026" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13727402..13730073) /note="source:CACAO_M_E86305_F7_scaffold_15 6225 8926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13732199..13732809 /note="source:CACAO_M_E48538_F49_scaffold_6 12213 12895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13732833..13733343 /note="source:CACAO_M_E48538_F49_scaffold_6 1049 1569" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13733247..13733359) /note="source:CACAO_M_E36038_F90_scaffold_5 13221 13332" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13733343..13733669) /note="source:INTACT405F_F91_scaffold_4-int 158 487" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13733670..13736671) /note="source:CACAO_M_E10019_F324_scaffold_2 1 3011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13736672..13736830 /note="source:CACAO_M_E69283_F22_scaffold_9 916 1073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13736840..13737303) /note="source:CACAO_M_E48538_F49_scaffold_6 12457 12895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13737325..13737708) /note="source:INTACT598_F89_scaffold_2-int 12003 12387" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13737809..13739425) /note="source:CACAO_M_S_E1495_F60_scaffold_1 2376 3886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13739372..13739519) /note="source:scaffold_3_CACTA_0382 1861 1924" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13740245..13740342) /note="source:scaffold_9_CACTA_0937 7045 7142" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13740351..13740835) /note="source:scaffold_9_CACTA_0937 6413 6936" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13740836..13741288) /note="source:CACAO_M_E48538_F49_scaffold_6 11950 12405" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13741369..13742203) /note="source:CACAO_M_E48538_F49_scaffold_6 11109 11949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13742203..13742613) /note="source:CACAO_M_E48538_F49_scaffold_6 7726 8116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13742614..13743129) /note="source:CACAO_M_E57851_F33_scaffold_9 2280 2770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13743232..13745471) /note="source:CACAO_M_E52313_F33_scaffold_7 1 2239" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13745516..13746544) /note="source:CACAO_M_E48538_F49_scaffold_6 6613 7633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13746545..13748527 /note="source:CACAO_M_E14369_F47_scaffold_3 1 1983" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13748528..13750065) /note="source:CACAO_M_E48538_F49_scaffold_6 5088 6617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13750195..13750671) /note="source:CACAO_M_E48538_F49_scaffold_6 4571 5025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13750780..13750885) /note="source:CACAO_M_E48538_F49_scaffold_6 3991 4093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13750880..13751355) /note="source:scaffold_8_CACTA_0858 14215 14691" /mobile_element_type="transposon:TIR/CACTA" mRNA join(13751677..13752041,13753919..13753996, 13754077..13754139,13754557..13754604,13754674..13754820, 13755196..13755327,13756507..13756547,13757262..13757353, 13757490..13757617,13759713..13759788,13759961..13760081, 13760150..13760249,13761547..13761628,13764605..13764687, 13765159..13765275,13765680..13765731,13766001..13766156, 13767549..13767672,13767778..13767859,13767947..13768035, 13768138..13768212,13768310..13768364,13769129..13769248, 13769335..13769427,13769513..13769658,13770182..13770359, 13770498..13771212) /locus_tag="TCM_013401" /product="ARM repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007840001" /inference="similar to AA sequence:Phytozome:GSVIVT01007840001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3133t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3133t5" CDS join(13751910..13752041,13753919..13753996, 13754077..13754139,13754557..13754604,13754674..13754820, 13755196..13755327,13756507..13756547,13757262..13757353, 13757490..13757617,13759713..13759788,13759961..13760081, 13760150..13760249,13761547..13761628,13764605..13764687, 13765159..13765275,13765680..13765731,13766001..13766156, 13767549..13767672,13767778..13767859,13767947..13768035, 13768138..13768212,13768310..13768364,13769129..13769248, 13769335..13769427,13769513..13769658,13770182..13770359, 13770498..13770776) /locus_tag="TCM_013401" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein isoform 2" /protein_id="EOY21573.1" /db_xref="Phytozome:GSVIVT01007840001" /db_xref="TAIR:AT5G62600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GUL2" /translation="MQSMELQNTVKEALNALYHHPDDAVRMQADRWLQDFQRTIDAWQ VADNLLHDATSNLETLIFCSQTLRSKVQRDFEELPSEAFRQLRDSLNNLLKKFHKGPP IVRTQISIAVAALAVHVPAEDWGDGGIVNSLRDEMNSHPEYIPGFLELLTVLPEEAFN YKIAARPERRRHFEKELTSQMEIALNILTACLNISELKEQVLEAFASWLRLKHGIPGS VLATHPLVLTALSSLNSDILSEASVNVVSELIHYTASGSSGGVSIQMPLIQVIVPQVM SLQAQLRDSSKDEEDVKAIARLFADMGDSYVELIATGSNEAMMIVNALLEVASLPEYD IASMTFNFWHSLQVILTKRNSNISFGDEASIEAERNRRLQVFHQSYESLVSLVSSRVQ YPQDYQDLSYEDLKEFKQTRYAVADVLSDAASVLGGDATLQILYMKLVEAISCCGNEH NEWRPAEAALFCIRAISNYVSVVEANVMPQVMDLLSKLPHQAQLLQTVCLIIGAYSKW LDAALSGFSKLPLVIDILMSGMRTSEDSAAAAALAFRHICDDCRKKLCAYCKQLFHIY YTAVNGEGSFKGSAEDSLHLVEALSMVITELPPESAKDALEELCSSIVTPLQEVINQG PEVLEKKHARELTVHIDRFAYIFRYVNHPGAVADAIHRLWPIFKAIFDLRAWDMRTME SLCRACKYAVRTSGRFMGITIGAMLEEIQGLYQQHHQPCFLYLSSEVIKIFGSEPSCA SYLKNMIEALFKHTTCLLTNIKEFTTRPDIADDCFLLASRCIRYCPQLFIPSAVFPAL VECSMIGITVQHREASNSVLTFLSDIFDLAKSSKGEQFLSIRDSVIIPRGASITRILV AALAGALPSSRLETVAYALLALTRAYGMQALEWAKESVSLIPLTAVKEVERSRFLKAL SDAASGADVNALMVPVEELSDVCRRNRTVQEIVQGALKPLELNMLPVS" mobile_element 13752661..13752729 /note="source:scaffold_3_CACTA_0382 1861 1918" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13752680..13752740) /note="source:scaffold_3_CACTA_0382 1857 1918" /mobile_element_type="transposon:TIR/CACTA" CDS join(13753489..13753677,13753919..13753996, 13754077..13754139,13754557..13754604,13754674..13754820, 13755196..13755327,13756507..13756547,13757262..13757353, 13757490..13757617,13759713..13759788,13759961..13760081, 13760150..13760249,13761284..13761379,13761517..13761628, 13764605..13764687,13765159..13765275,13765680..13765731, 13766001..13766156,13767549..13767672,13767778..13767859, 13767947..13768035,13768138..13768212,13768310..13768364, 13769129..13769248,13769335..13769427,13769513..13769658, 13770182..13770359,13770498..13770776) /locus_tag="TCM_013401" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein isoform 1" /protein_id="EOY21572.1" /db_xref="Phytozome:GSVIVT01007840001" /db_xref="TAIR:AT5G62600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GUL2" /translation="MHHCALFRIMSQLRLVAACSFLIVSTCLLDFSSPLFDMVVLRYG TSSLGVFFGLHVACPNTLNVADNLLHDATSNLETLIFCSQTLRSKVQRDFEELPSEAF RQLRDSLNNLLKKFHKGPPIVRTQISIAVAALAVHVPAEDWGDGGIVNSLRDEMNSHP EYIPGFLELLTVLPEEAFNYKIAARPERRRHFEKELTSQMEIALNILTACLNISELKE QVLEAFASWLRLKHGIPGSVLATHPLVLTALSSLNSDILSEASVNVVSELIHYTASGS SGGVSIQMPLIQVIVPQVMSLQAQLRDSSKDEEDVKAIARLFADMGDSYVELIATGSN EAMMIVNALLEVASLPEYDIASMTFNFWHSLQVILTKRNSNISFGDEASIEAERNRRL QVFHQSYESLVSLLAVLRDLHESSSLLQCPVFVNKYFVKISVRYETLECHGFSSQVSS RVQYPQDYQDLSYEDLKEFKQTRYAVADVLSDAASVLGGDATLQILYMKLVEAISCCG NEHNEWRPAEAALFCIRAISNYVSVVEANVMPQVMDLLSKLPHQAQLLQTVCLIIGAY SKWLDAALSGFSKLPLVIDILMSGMRTSEDSAAAAALAFRHICDDCRKKLCAYCKQLF HIYYTAVNGEGSFKGSAEDSLHLVEALSMVITELPPESAKDALEELCSSIVTPLQEVI NQGPEVLEKKHARELTVHIDRFAYIFRYVNHPGAVADAIHRLWPIFKAIFDLRAWDMR TMESLCRACKYAVRTSGRFMGITIGAMLEEIQGLYQQHHQPCFLYLSSEVIKIFGSEP SCASYLKNMIEALFKHTTCLLTNIKEFTTRPDIADDCFLLASRCIRYCPQLFIPSAVF PALVECSMIGITVQHREASNSVLTFLSDIFDLAKSSKGEQFLSIRDSVIIPRGASITR ILVAALAGALPSSRLETVAYALLALTRAYGMQALEWAKESVSLIPLTAVKEVERSRFL KALSDAASGADVNALMVPVEELSDVCRRNRTVQEIVQGALKPLELNMLPVS" mobile_element 13772640..13778845 /note="source:INTACT363_F7_scaffold_9-int 1 6270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13778826..13779080 /note="source:CACAO_M_S_E7318_F7_scaffold_2 2724 2977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13779122..13779194) /note="source:CACAO_M_E69800_F12_scaffold_9 14422 14501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13779406..13779552 /note="source:INTACT537_F22_scaffold_2-int 12124 12269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13790622..13790679) /note="source:CACAO_M_E3248_F5_scaffold_1 3645 3700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13792816..13792856) /note="source:scaffold_1_CACTA_0028 1924 1964" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13797262..13797798 /note="source:CACAO_M_E14375_F318_scaffold_3 1 544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13797510..13799041) /note="source:CACAO_M_S_E99574_F14_scaffold_9 8474 9989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13799142..13800134) /note="source:scaffold_6_CACTA_0710 12672 13668" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13806047..13809229 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5808 9004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13809726..13811129) /note="source:INTACT1793F_F14_scaffold_10-int 8834 10260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13811132..13815068) /note="source:INTACT1793F_F14_scaffold_10-int 4516 8454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13815069..13818100 /note="source:CACAO_M_E14375_F318_scaffold_3 1 3022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13818101..13822509) /note="source:INTACT1793F_F14_scaffold_10-int 1 4445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13825950..13826250) /note="source:INTACT39F_F22_scaffold_1-int 7135 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13826251..13829219 /note="source:CACAO_M_E14378_F288_scaffold_3 1 2969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13829220..13829410 /note="source:CACAO_M_E11662_F12_scaffold_2 5076 5266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13829417..13832375 /note="source:CACAO_M_E14379_F15_scaffold_3 1 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13832376..13833718) /note="source:INTACT39F_F22_scaffold_1-int 5624 6955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13833709..13834867) /note="source:INTACT39F_F22_scaffold_1-int 4278 5447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13834868..13837982 /note="source:CACAO_M_E14380_F42_scaffold_3 1 3115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13837983..13838708 /note="source:CACAO_M_E11662_F12_scaffold_2 7763 8500" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13839280..13840740) /locus_tag="TCM_013516" /note="dbxref CacaoGD:Thecc1EG013516" mRNA complement(join(13839280..13840361,13840603..13840740)) /locus_tag="TCM_013516" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013473t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" mobile_element 13839532..13839614 /note="source:INTACT154_F14_scaffold_8-int 7076 7163" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(13839948..13840211) /locus_tag="TCM_013516" /note="paralog of Thecc1EG013473t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21604.1" /translation="MASWDSLDLDLIEINAKAIYIILSALGERQENQVHNCGNAKKIC DKLDELYGQPLEKKLEKDDLLDESHQVMMKRISNFELQEQTMR" mobile_element 13840893..13842688 /note="source:CACAO_M_E1553_F369_scaffold_1 1 1794" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13842739..13843308) /note="source:CACAO_M_E23752_F369_scaffold_4 1 580" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13845111..13849869 /locus_tag="TCM_013517" /note="dbxref CacaoGD:Thecc1EG013517" mRNA join(13845111..13845893,13846398..13846480, 13846569..13846689,13846815..13846988,13848354..13848461, 13848547..13848772,13849481..13849869) /locus_tag="TCM_013517" /product="Serine/threonine-protein kinase AtPK2/AtPK19 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045572t1" /inference="similar to AA sequence:frave:gene09523" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00549t00001; inference alignment:Newbler:10:TSA:cgbaB_g00549t00001" mRNA join(13845111..13845893,13846815..13846988, 13848354..13848461,13848547..13848772,13849481..13849869) /locus_tag="TCM_013517" /product="Serine/threonine-protein kinase AtPK2/AtPK19 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045572t1" /inference="similar to AA sequence:Phytozome:Glyma17g10270.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00549t00002; inference alignment:Newbler:10:TSA:cgbaB_g00549t00001" CDS join(13845294..13845893,13846398..13846480, 13846569..13846689,13846815..13846988,13848354..13848461, 13848547..13848772,13849481..13849488) /locus_tag="TCM_013517" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene09523; paralog of Thecc1EG045572t1" /codon_start=1 /product="Serine/threonine-protein kinase AtPK2/AtPK19 isoform 1" /protein_id="EOY21605.1" /db_xref="TAIR:AT3G08720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39030" /translation="MISTSSSQKKNLQSLLATNLKKLTITPPPPPNNDFDFAEVFGPL TPQHHQPNPTQSPSSTSSPSAFLGDPQVIHTRSHSYVGPSPRYTLSSCLPFQIQEIQE TETENEAEAEEEEAKTKFGPEDFEIMRVVGKGAFGKVFLVRRNGRNDEEGDGDGIFAM KVMRKDTILKKNHVDYMKAERNILTKVVHPFIVQLRYSFQTKSKLYLILDFVNGGHLF FHLYRQGIFCEDQARFYTAEIVSAVSHLHKCGIVHRDLKPENILVDADGHVMLTDFGL AKEIDESGRSNSMCGTTEYMAPEILQSKGHNKDADWWSIGILLYEMLTGQPPFTHANR QKLQQRIIQEKVKLPPFLSTEAHSLLKGLLQKEPSRRLGSGPSGGDEIKKHKWFRSIN WKKLEAREIQPKFKPDVSGKDCTANFDQCWTTMPADDSPASTPTADF" CDS join(13845294..13845893,13846815..13846988, 13848354..13848461,13848547..13848772,13849481..13849488) /locus_tag="TCM_013517" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG045572t1" /codon_start=1 /product="Serine/threonine-protein kinase AtPK2/AtPK19 isoform 2" /protein_id="EOY21606.1" /db_xref="Phytozome:Glyma17g10270.1" /db_xref="TAIR:AT3G08720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39030" /translation="MISTSSSQKKNLQSLLATNLKKLTITPPPPPNNDFDFAEVFGPL TPQHHQPNPTQSPSSTSSPSAFLGDPQVIHTRSHSYVGPSPRYTLSSCLPFQIQEIQE TETENEAEAEEEEAKTKFGPEDFEIMRVVGKGAFGKVFLVRRNGRNDEEGDGDGIFAM KVMRKDTILKKNHVDYMKAERNILTKVVHPFIVQLRYSFQVMLTDFGLAKEIDESGRS NSMCGTTEYMAPEILQSKGHNKDADWWSIGILLYEMLTGQPPFTHANRQKLQQRIIQE KVKLPPFLSTEAHSLLKGLLQKEPSRRLGSGPSGGDEIKKHKWFRSINWKKLEAREIQ PKFKPDVSGKDCTANFDQCWTTMPADDSPASTPTADF" gene 13850481..13851396 /locus_tag="TCM_013518" /note="dbxref CacaoGD:Thecc1EG013518" mRNA 13850481..13851396 /locus_tag="TCM_013518" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08000.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s08000.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1201t1" CDS 13850669..13851097 /locus_tag="TCM_013518" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21607.1" /db_xref="Phytozome:POPTR_0015s08000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEJ7" /translation="MIEDRNDKSLCEKSMKMVVNIIKLSTFSIAKMSLGATGHPTATE NFIPATDSDMVTDDLLQPQFSGSLRSKKLQNSKPISFVMQPGGGNESLMVHEDKRDID GRFAAYIKKVHEKNRSNLHEASKLSPYILPPPPTPLNREK" mobile_element 13854572..13866347 /note="source:INTACT524_F2_scaffold_3-int 1 11776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13867127..13867278 /note="source:INTACT280_F60_scaffold_5-int 8891 9030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13868030..13871127) /note="source:CACAO_M_E4863_F82_scaffold_2 175 3309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13870516..13871206 /note="source:INTACT405F_F91_scaffold_4-int 6876 7603" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13871116..13871233) /note="source:CACAO_M_E41756_F85_scaffold_5 5726 5830" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13873875..13881877 /locus_tag="TCM_013521" /note="dbxref CacaoGD:Thecc1EG013521" mRNA join(13873875..13874204,13878440..13878575, 13878982..13879525,13881715..13881877) /locus_tag="TCM_013521" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008621t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS join(13878451..13878575,13878982..13879222) /locus_tag="TCM_013521" /note="paralog of Thecc1EG008621t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21608.1" /translation="MAPKRARARASSNGSFDQTRFVFANAMARYASSLINKITIPNDI TKDRAIFIHSIMMGLTITFGYVIFKAMTHITKIKQDGLQFLSLIIAMCKMAGVHYDAN EELLHLELTIDINLILIQL" mobile_element complement(13879504..13880818) /note="source:CACAO_M_E49195_F17_scaffold_6 1747 3071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13880804..13880968) /note="source:CACAO_M_E49195_F17_scaffold_6 1402 1563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13882177..13883676) /note="source:CACAO_M_E49195_F17_scaffold_6 1 1460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13883677..13886193) /note="source:CACAO_M_S_E32578_F60_scaffold_4 3996 6519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13887125..13890063 /note="source:CACAO_M_E14388_F44_scaffold_3 1 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13891730..13892003) /note="source:CACAO_M_S_E32578_F60_scaffold_4 3729 4001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13893133..13893267) /note="source:CACAO_M_E58601_F7_scaffold_9 4155 4296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13899831..13899887 /note="source:CACAO_M_E42586_F54_scaffold_5 1758 1814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13902303..13903089) /note="source:CACAO_M_E72867_F9_scaffold_10 1 718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13904249..13904415) /note="source:CACAO_M_S_E99244_F4_scaffold_9 11710 11876" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13904416..13906275 /note="source:CACAO_M_S_E19555_F4_scaffold_3 1 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13906276..13906800) /note="source:INTACT724_F4_scaffold_8-int 8259 8823" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13908995..13909221 /note="source:CACAO_M_E5627_F4_scaffold_2 2187 2404" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13911066..13913700 /note="source:INTACT329_F199_scaffold_2-int 169 2799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13913697..13916401) /note="source:INTACT212_F171_scaffold_10-int 107 2807" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13914868..13916614) /note="source:CACAO_on_E279_scaffold_9 8453 10209" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 13916609..13917680 /note="source:INTACT329_F199_scaffold_2-int 2785 3853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13917681..13920631) /note="source:CACAO_M_E22733_F54_scaffold_3 1 2919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13920632..13921471 /note="source:INTACT329_F199_scaffold_2-int 3849 5444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13922282..13922886 /note="source:CACAO_M_E5627_F4_scaffold_2 11677 12281" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13924177..13924325) /note="source:CACAO_M_E23991_F4_scaffold_4 8226 8402" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13924714..13924959 /note="source:INTACT329_F199_scaffold_2-int 6559 6800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13924948..13926012 /note="source:INTACT329_F199_scaffold_2-int 822 1894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13926497..13929425 /note="source:CACAO_M_E14401_F247_scaffold_3 1 2929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13930078..13930154) /note="source:INTACT424_F211_scaffold_12-int 1 77" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13930155..13931913) /note="source:CACAO_M_S_E7818_F60_scaffold_2 1967 3721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13931910..13932070 /note="source:CACAO_Mutator_E1376_scaffold_6 1863 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(13932071..13932812) /note="source:CACAO_M_S_E7818_F60_scaffold_2 1231 1974" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13933224..13935394) /locus_tag="TCM_013524" /note="dbxref CacaoGD:Thecc1EG013524" mRNA complement(join(13933224..13934375,13934762..13934970, 13935067..13935394)) /locus_tag="TCM_013524" /product="Homeodomain-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014028" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010118t1" /inference="similar to AA sequence:ricco:30147.m014028" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc439t19" CDS complement(join(13933989..13934375,13934762..13934970, 13935067..13935373)) /locus_tag="TCM_013524" /note="dbxref ricco:30147.m014028; paralog of Thecc1EG010118t1" /codon_start=1 /product="Homeodomain-like superfamily protein, putative" /protein_id="EOY21609.1" /db_xref="TAIR:AT1G19000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2V9B0" /translation="MPASTCASASSSTANSTANGGSGGGGEIMLFGVRVVVDSMRKSV SMNNLSQYEQPHASNSNNKINEKSNNNNNNKGDDNVTAGYASADDAVPQSTGNRERKR GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNLNRRR RRSSLFDITTDTVAAVPMEEEQVHPLGNTTQPSEINGFPMMPTAFPMTVNPPVPMENL TLGQGNRSDNNATAKLIRPVPISPAPLASDLNLNLNSVVGPSPLSLKLSLQPEQKDSS SRHSAFQVMPSFSNGDSNSIISVA" mobile_element complement(13939345..13941293) /note="source:CACAO_M_S_E83522_F7_scaffold_6 1039 2987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13941294..13944069 /note="source:CACAO_M_E14404_F79_scaffold_3 1 2776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13944070..13945124) /note="source:CACAO_M_S_E916_F7_scaffold_1 1 1053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13946695..13956798 /note="source:INTACT506_F233_scaffold_3-int 1 10104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13958163..13968723 /note="source:INTACT582_F262_scaffold_3-int 1 10561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13971645..13972151 /note="source:CACAO_M_E22622_F15_scaffold_3 1 483" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13972252..13974680) /note="source:INTACT135_F42_scaffold_4-int 3374 5803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13974681..13974845 /note="source:INTACT1581F_F99_scaffold_9-int 1 158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13977955..13978606) /note="source:INTACT296_F13_scaffold_9-int 13805 14446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13981638..13984551 /note="source:INTACT183F_F349_scaffold_3-int 7835 10751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13986820..13988007 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3035 4222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13988013..13990333 /note="source:CACAO_M_E52239_F256_scaffold_7 4081 6438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13995535..13995579) /note="source:INTACT167_F5_scaffold_2-int 1156 1200" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13995651..13996945) /locus_tag="TCM_013531" /note="dbxref CacaoGD:Thecc1EG013531" mRNA complement(join(13995651..13995674,13996498..13996945)) /locus_tag="TCM_013531" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018010t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(13995696..13995851) /note="source:CACAO_M_E70891_F369_scaffold_10 2632 2787" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(13996568..13996879) /locus_tag="TCM_013531" /note="paralog of Thecc1EG018010t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21610.1" /translation="MELEVVGLIPKKVRDGISKKRKERKRKKGKQMKNILIFHDGEMK MAWEHEGKEENSFWVDKNRPREKKIRVKASFGSFDQANGKITILPSKVFPILIKSSHN L" mobile_element complement(13997896..13998094) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1709 1906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13999745..14000333 /note="source:CACAO_M_E52239_F256_scaffold_7 21854 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14000348..14000414 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1328 1393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14000357..14000424) /note="source:INTACT296_F13_scaffold_9-int 12994 13060" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14001197..14002694) /note="source:INTACT591_F264_scaffold_1-int 19742 21267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14003014..14003076) /note="source:CACAO_M_S_E85177_F5_scaffold_7 163 225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14003323..14003988) /note="source:INTACT591_F264_scaffold_1-int 17863 18546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14011937..14012002 /note="source:CACAO_M_E22186_F143_scaffold_3 9968 10037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14012799..14015570 /note="source:CACAO_M_E14417_F87_scaffold_3 1 2772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14019893..14022223) /note="source:INTACT280_F60_scaffold_5-int 8693 9683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14025087..14027922) /note="source:CACAO_M_E12912_F15_scaffold_3 1 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14027924..14029267 /note="source:scaffold_3_CACTA_0382 10551 11876" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14031633..14033004 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17612 18999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14033005..14034033) /note="source:INTACT39F_F22_scaffold_1-int 2041 3089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14033511..14034105 /note="source:CACAO_M_E58819_F24_scaffold_9 15706 16285" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14034114..14034157) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1389 1431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14035253..14035309 /note="source:CACAO_M_E58819_F24_scaffold_9 15356 15411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14041658..14048592) /note="source:INTACT528_F17_scaffold_6-int 943 7902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14048594..14048761) /note="source:CACAO_M_E4753_F17_scaffold_2 13310 13477" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14051120..14053514 /locus_tag="TCM_013537" /note="dbxref CacaoGD:Thecc1EG013537" mRNA join(14051120..14051212,14052662..14053514) /locus_tag="TCM_013537" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027709t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(14051164..14051212,14052662..14053359) /locus_tag="TCM_013537" /note="paralog of Thecc1EG027709t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21611.1" /translation="MVGFNVCRHNVPFELIAEHTLDFVLDFDIRQGDWRYAKEVLFNE ILSTVNIYPPTSDKNTTSVKCLSCYDYILHLIMSQILQPHNTNYSTIESEDFWFLYHI KSNPHVKLAKFILDNMLKIINKSRTTLIYGMAISVIIDSVGIITRCDPPKHHAMHMKI IEHAINKLGFVYVNHFCVRKEIVNELDIVEDEVRDDTFAELSVAPNTAPNAAARVHPS VGPNFPPMSTTFDFEEVIPSSLSFTILSPS" mobile_element 14054005..14054074 /note="source:INTACT189_F49_scaffold_5-int 17801 17873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14054034..14054084) /note="source:CACAO_M_S_E85957_F12_scaffold_7 1056 1108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14060223..14063321 /note="source:CACAO_M_E14428_F42_scaffold_3 1 3099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14066154..14068538) /note="source:CACAO_M_E9486_F15_scaffold_2 377 2764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14068539..14069714 /note="source:scaffold_3_CACTA_0382 6648 7820" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14069815..14070909 /note="source:CACAO_M_E53009_F42_scaffold_8 5022 6116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14070796..14070921) /note="source:CACAO_M_S_E31737_F15_scaffold_3 7768 7891" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14070902..14071293) /note="source:CACAO_M_E233608_F15_scaffold_90 1 392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14071294..14071327 /note="source:CACAO_M_S_E6619_F15_scaffold_2 2816 2877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14078026..14079466) /note="source:CACAO_M_E13466_F15_scaffold_3 1421 2836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14079567..14089179 /note="source:INTACT709_F15_scaffold_9-int 1436 11066" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14090108..14102631 /locus_tag="TCM_013541" /note="dbxref CacaoGD:Thecc1EG013541" mRNA join(14090108..14090722,14090808..14091032, 14099771..14100154,14101733..14102631) /locus_tag="TCM_013541" /product="Homeobox-leucine zipper protein ATHB-15, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene30399" /inference="similar to AA sequence:ricco:28035.m000367" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05808t00001" mRNA join(14090141..14090722,14090808..14090966, 14099771..14100154,14101733..14102553) /locus_tag="TCM_013541" /product="Homeobox-leucine zipper protein ATHB-15, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene30399" /inference="similar to AA sequence:Phytozome:Glyma15g09840.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc922t2; inference alignment:Newbler:10:TSA:cgbaB_g05808t00001" CDS join(14090330..14090722,14090808..14091032, 14099771..14100154,14101733..14102200) /locus_tag="TCM_013541" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28035.m000367" /codon_start=1 /product="Homeobox-leucine zipper protein ATHB-15, putative isoform 1" /protein_id="EOY21612.1" /db_xref="TAIR:AT1G73240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TY85" /translation="MHSAESGMVVKNRLVEFLIWQSIPSSLIFLVFTSMIVSGRSPAA IFISFLSFHLSQLLFSVSLSAVSSPERKFGRSLPVMLGAAAVSGYVSAVSLCGVNGRV GFKGFASGLFYAFFYIYKRRWVLHFPIIQRSPFFSFKMGIPSAITRALKLSAAAYLFS ALLLVFLPHHFNTELELGNLFAQHVISYSVSFSLFLCWELAHHLQQVLHTKRFIFAPP KGSAAAETNPSEPLLAALEESSPTSLLKYLAYLDLCMVCENNVDYWRRAAFFEETGET YRRVAAVCLRPLEQLASKLGEGLEGSSDGKAYRVSDQLQSSTDPRMNSKCYELMNNFQ LYTWSARTIASLTAHSHKEDRFGVAQLSGSNAAVISTLIACLLAVETFMGKKSSLQPS PHLMGPAGIKWATSSIGRRDVRTGKRRDGPLYSKAYAMADVLRTSIYCIVSAFHNEML TNAKAGLLEKDWISSGTPPFGTRELLLQKLLLFLDFQAS" CDS join(14090330..14090722,14090808..14090966, 14099771..14100154,14101733..14102200) /locus_tag="TCM_013541" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Homeobox-leucine zipper protein ATHB-15, putative isoform 2" /protein_id="EOY21613.1" /db_xref="Phytozome:Glyma15g09840.1" /db_xref="TAIR:AT1G73240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TY85" /translation="MHSAESGMVVKNRLVEFLIWQSIPSSLIFLVFTSMIVSGRSPAA IFISFLSFHLSQLLFSVSLSAVSSPERKFGRSLPVMLGAAAVSGYVSAVSLCGVNGRV GFKGFASGLFYAFFYIYKRRWVLHFPIIQRSPFFSFKMGIPSAITRALKLSAAAYLFS ALLLVFLPHHFNTELELGNLFAQHVLHTKRFIFAPPKGSAAAETNPSEPLLAALEESS PTSLLKYLAYLDLCMVCENNVDYWRRAAFFEETGETYRRVAAVCLRPLEQLASKLGEG LEGSSDGKAYRVSDQLQSSTDPRMNSKCYELMNNFQLYTWSARTIASLTAHSHKEDRF GVAQLSGSNAAVISTLIACLLAVETFMGKKSSLQPSPHLMGPAGIKWATSSIGRRDVR TGKRRDGPLYSKAYAMADVLRTSIYCIVSAFHNEMLTNAKAGLLEKDWISSGTPPFGT RELLLQKLLLFLDFQAS" mobile_element complement(14103310..14104349) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3533 4606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14104364..14104511 /note="source:INTACT280_F60_scaffold_5-int 18874 19023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14104645..14112209 /note="source:INTACT212F_F351_scaffold_3-int 1 7565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14112179..14112212) /note="source:CACAO_M_E69460_F12_scaffold_9 728 755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14112213..14115204 /note="source:CACAO_M_S_E19607_F7_scaffold_3 1 2992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14115205..14115996 /note="source:INTACT212F_F351_scaffold_3-int 279 1071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14117666..14118393) /note="source:CACAO_M_E1841_F5_scaffold_1 4758 5479" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14117792..14122367 /locus_tag="TCM_013543" /note="dbxref CacaoGD:Thecc1EG013543" mRNA join(14117792..14117803,14121254..14122367) /locus_tag="TCM_013543" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" mobile_element 14118389..14119980 /note="source:CACAO_M_E52239_F256_scaffold_7 20797 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 14121276..14121479 /locus_tag="TCM_013543" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21614.1" /translation="MSLSLLTTIPAGTQSHKAWNFTPPQVKSMFEIHPLNGTHIHKSS HFACDIPYVHIKSHSNSSSFSHL" mobile_element complement(14123371..14126490) /note="source:CACAO_M_S_E31651_F51_scaffold_3 1 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14126695..14137706 /note="source:INTACT213F_F15_scaffold_3-int 1 11012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14139006..14139044) /note="source:INTACT280_F60_scaffold_5-int 14300 14338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14139013..14139251 /note="source:CACAO_M_E50525_F33_scaffold_7 3543 3778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14139256..14139965) /note="source:CACAO_M_E1841_F5_scaffold_1 4746 5466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14140090..14142402) /note="source:CACAO_M_S_E5046_F335_scaffold_1 343 2625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14142410..14143111 /note="source:CACAO_M_S_E5046_F335_scaffold_1 3467 4140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14145693..14145983) /note="source:CACAO_M_E1841_F5_scaffold_1 16426 16711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14145786..14145984 /note="source:CACAO_M_E50525_F33_scaffold_7 3580 3778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14145989..14146639) /note="source:CACAO_M_E1841_F5_scaffold_1 4805 5466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14154352..14154815) /note="source:scaffold_8_CACTA_0859 15427 15883" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14154826..14155428) /note="source:scaffold_8_CACTA_0859 1048 1622" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14156646..14157577 /note="source:CACAO_M_E12297_F14_scaffold_3 1 934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14157551..14157728) /note="source:INTACT729_F15_scaffold_1-int 2740 2914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14157572..14160561 /note="source:INTACT504_F7_scaffold_1-int 6980 9971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14160562..14160814) /note="source:CACAO_M_S_E83372_F14_scaffold_6 1 250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14168996..14171349 /note="source:CACAO_M_E5892_F98_scaffold_2 2578 4928" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14169378..14196008 /locus_tag="TCM_013549" /note="dbxref CacaoGD:Thecc1EG013549" mRNA join(14169378..14169401,14174521..14174862, 14178831..14178918,14179493..14179592,14195982..14196008) /locus_tag="TCM_013549" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage" mobile_element complement(14171334..14171979) /note="source:CACAO_M_E1841_F5_scaffold_1 16002 16664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14173422..14174929 /note="source:INTACT95_F143_scaffold_9-int 1466 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(14174826..14174862,14178831..14178918, 14179493..14179577) /locus_tag="TCM_013549" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21615.1" /translation="MQEPCEVSIDISVSLSRDGPHEVHSNLYLQRHPPHGSPIEVRLG VYASYDMQLIRLPLKCGADLIRPIT" mobile_element 14174930..14177453 /note="source:CACAO_M_E5892_F98_scaffold_2 4917 7440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14177446..14178072) /note="source:CACAO_M_E58324_F9_scaffold_9 9592 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14178067..14183224 /note="source:CACAO_M_E42530_F72_scaffold_5 428 5644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14182767..14185722) /note="source:INTACT472_F79_scaffold_7-int 1 2990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14186985..14187745) /note="source:CACAO_M_E1841_F5_scaffold_1 3101 3862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14194189..14197140 /note="source:CACAO_M_E14472_F172_scaffold_3 1 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14197175..14198627 /note="source:CACAO_M_S_E34046_F60_scaffold_4 463 1915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14198631..14201575 /note="source:CACAO_M_E14474_F86_scaffold_3 1 2945" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14201576..14201893 /note="source:CACAO_M_S_E34046_F60_scaffold_4 1914 2232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14201894..14202118) /note="source:CACAO_M_E5899_F5_scaffold_2 979 1203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14203204..14204264) /note="source:CACAO_M_E22186_F143_scaffold_3 1885 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14204115..14204794 /note="source:INTACT231_F12_scaffold_4-int 7619 8262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14204386..14204794) /note="source:scaffold_5_CACTA_0601 4559 4923" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14206280..14212206) /note="source:CACAO_M_S_E84822_F86_scaffold_7 1846 7782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14213040..14213784 /note="source:CACAO_M_E210978_F86_scaffold_37 2192 2936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14213785..14215069 /note="source:INTACT231_F12_scaffold_4-int 8258 9548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14217617..14220570) /note="source:CACAO_M_S_E34046_F60_scaffold_4 3504 6462" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14225450..14228424 /note="source:CACAO_M_E14484_F15_scaffold_3 1 2975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14229667..14232464) /note="source:CACAO_M_E13958_F7_scaffold_3 389 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14237590..14238075 /note="source:scaffold_5_CACTA_0601 9171 9668" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14238077..14238705 /note="source:CACAO_M_S_E34046_F60_scaffold_4 8781 9410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14238685..14240016 /note="source:CACAO_M_S_E34046_F60_scaffold_4 11809 13147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14240013..14246630) /note="source:scaffold_2_CACTA_0259 1500 8088" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14244631..14249594 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15556 20456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14249595..14250014 /note="source:CACAO_M_E14490_F322_scaffold_3 1 420" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14250428..14252504 /note="source:CACAO_M_E14490_F322_scaffold_3 421 2497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14252505..14252924) /note="source:scaffold_2_CACTA_0259 5418 5836" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14252918..14253855) /note="source:INTACT280_F60_scaffold_5-int 3640 4572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14253849..14254285) /note="source:INTACT280_F60_scaffold_5-int 2537 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14255330..14255947 /note="source:CACAO_M_S_E52921_F60_scaffold_5 282 904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14255947..14257128 /note="source:INTACT126_F14_scaffold_3-int 14969 16139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14257130..14257954) /note="source:INTACT280_F60_scaffold_5-int 1 828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14262079..14262174 /note="source:CACAO_M_E24592_F195_scaffold_4 10909 11004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14263400..14264294) /note="source:scaffold_4_CACTA_0494 3164 4037" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14264295..14266815) /note="source:INTACT518_F239_scaffold_2-int 6889 8857" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14266807..14267653) /note="source:scaffold_4_CACTA_0494 2320 3154" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14267835..14267984 /note="source:CACAO_M_E43251_F322_scaffold_5 9914 10068" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14267986..14268593) /note="source:scaffold_4_CACTA_0494 1545 2153" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14271556..14271634) /note="source:CACAO_M_E72867_F9_scaffold_10 14662 14738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14274067..14274391) /note="source:CACAO_M_E1841_F5_scaffold_1 15331 15650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14274394..14275794) /note="source:CACAO_M_S_E64440_F7_scaffold_5 1 1386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14277694..14284393) /note="source:CACAO_M_E84368_F4_scaffold_10 6519 13224" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14284394..14284937) /note="source:CACAO_M_S_E52220_F15_scaffold_5 2210 2754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14284938..14290269 /note="source:INTACT181_F15_scaffold_5-int 2782 10495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14290270..14290341) /note="source:CACAO_M_E84368_F4_scaffold_10 6439 6510" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14290343..14290437) /note="source:INTACT424_F211_scaffold_12-int 8756 8857" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14290438..14294877 /note="source:CACAO_M_S_E85473_F233_scaffold_7 1 4676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14294692..14295095 /note="source:scaffold_3_CACTA_0388 1365 1769" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14294864..14295727) /note="source:INTACT518_F239_scaffold_2-int 4052 4919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14295725..14295959) /note="source:INTACT518_F239_scaffold_2-int 3658 3892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14295960..14296537 /note="source:CACAO_M_E52877_F7_scaffold_8 7417 8002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14296558..14298392 /note="source:CACAO_M_E52877_F7_scaffold_8 88 1897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14298393..14301550 /note="source:CACAO_M_E14509_F378_scaffold_3 1 3158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14301550..14304358 /note="source:CACAO_M_S_E65805_F7_scaffold_5 1876 4685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14301551..14302614 /note="source:CACAO_on_S_E58_scaffold_2 13604 14702" /mobile_element_type="transposon:TIR/Mutator" mobile_element 14304359..14307042 /note="source:CACAO_M_E14511_F345_scaffold_3 1 2684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14307034..14307756) /note="source:CACAO_M_S_E6875_F7_scaffold_2 9652 10354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14307043..14307113 /note="source:INTACT103_F9_scaffold_4-int 8477 8548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14307427..14312133 /note="source:INTACT363_F7_scaffold_9-int 5240 9921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14313230..14313284 /note="source:CACAO_M_E70891_F369_scaffold_10 14346 14400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14313375..14313702 /note="source:CACAO_M_E35365_F15_scaffold_5 10739 11024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14313703..14314039) /note="source:CACAO_M_S_E119191_F3_scaffold_9 1135 1472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14318843..14319304 /note="source:CACAO_M_E22186_F143_scaffold_3 11062 11458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14319662..14319720 /note="source:CACAO_M_E22186_F143_scaffold_3 11446 11504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14320310..14323440 /note="source:CACAO_M_S_E19695_F7_scaffold_3 1 3131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14324906..14325052 /note="source:CACAO_M_S_E1495_F60_scaffold_1 2314 2490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14325840..14328521 /note="source:INTACT296_F13_scaffold_9-int 11729 14445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14329030..14329095) /note="source:CACAO_Again_on_E14_scaffold_1 691 757" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(14329120..14330073) /note="source:scaffold_8_CACTA_0859 494 1467" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14336241..14337094) /note="source:INTACT473_F7_scaffold_3-int 7960 8809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14337572..14338194) /note="source:INTACT473_F7_scaffold_3-int 7374 7992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14341393..14341717 /note="source:INTACT405F_F91_scaffold_4-int 15957 16286" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14341718..14343298) /note="source:CACAO_M_E14401_F247_scaffold_3 1330 2929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14343299..14346016 /note="source:CACAO_M_E14401_F247_scaffold_3 1 2740" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14346009..14346484) /note="source:CACAO_M_S_E64023_F13_scaffold_5 19174 19650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14346485..14346662 /note="source:CACAO_M_S_E86008_F7_scaffold_7 1 159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14347311..14349578 /note="source:CACAO_M_E53388_F15_scaffold_8 4100 6375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14349579..14349779 /note="source:CACAO_M_E14401_F247_scaffold_3 2729 2929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14349780..14349861 /note="source:CACAO_M_S_E64023_F13_scaffold_5 7554 7634" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14349785..14350929) /note="source:INTACT407F_F356_scaffold_4-int 2160 3330" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14350927..14351429) /note="source:CACAO_M_E14401_F247_scaffold_3 1 504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14353170..14354164) /note="source:INTACT407F_F356_scaffold_4-int 3992 5005" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14354148..14354203 /note="source:scaffold_8_CACTA_0859 12476 12530" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14354204..14357308 /note="source:CACAO_M_E14524_F15_scaffold_3 1 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14357309..14358767) /note="source:CACAO_M_E14401_F247_scaffold_3 428 1882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14357445..14359025) /note="source:INTACT407F_F356_scaffold_4-int 2157 3756" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14359027..14359514 /note="source:INTACT405F_F91_scaffold_4-int 16283 16784" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14360080..14362452) /note="source:CACAO_M_E12544_F89_scaffold_3 634 3013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14362453..14374036 /note="source:INTACT669_F295_scaffold_3-int 1 11568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14374037..14378420) /note="source:CACAO_M_E69228_F89_scaffold_9 4304 8692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14381634..14386773) /note="source:CACAO_M_E53215_F369_scaffold_8 1 5235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14386774..14389472) /note="source:CACAO_M_S_E5046_F335_scaffold_1 15314 18054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14389766..14390104) /note="source:CACAO_M_S_E5046_F335_scaffold_1 2616 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14390683..14390852) /note="source:CACAO_M_E56693_F323_scaffold_8 3250 3416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14390810..14391417 /note="source:CACAO_M_E34565_F323_scaffold_5 239 847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14391518..14394033) /note="source:CACAO_M_E58722_F323_scaffold_9 1 2532" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14395268..14398031 /locus_tag="TCM_013563" /note="dbxref CacaoGD:Thecc1EG013563" mRNA join(14395268..14395817,14396739..14396963, 14397048..14397300,14397382..14397499,14397582..14398031) /locus_tag="TCM_013563" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023515t1" /inference="similar to AA sequence:Phytozome:Glyma01g20680.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.64 coverage" mobile_element complement(14396665..14398816) /note="source:CACAO_M_E69228_F89_scaffold_9 2185 4319" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(14396817..14396963,14397048..14397300, 14397382..14397499,14397582..14397954) /locus_tag="TCM_013563" /note="paralog of Thecc1EG023515t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21616.1" /db_xref="Phytozome:Glyma01g20680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BRX9" /translation="MDFVLGLPRTQSGNDAIWVIVDRLTKSTHFLAIHSTNSIEKLAK LYIDEEALGTNLRFSNAFHPQTDGQSERTIQTLEDMLRACVIDFIGSWDRHLPLVEFA CNNSFQSSIGMAPYEALYGRKCRTPLYWDKVDQDKQESYSDRRRKDLEFEVDDRVFLK VSPWKGNDLNTLRRGKLNPRYIGTFRITERIGLVEYRLKLPPELDWIHNVFHVSMLKK YVLDPSHILETPPIELQEDLKFEVQPVHILDRKDRVLRNKNISMVKVLWKNARMEEMT WEVEHQMRNQYSHLFSESGK" mobile_element 14398917..14400092 /note="source:CACAO_M_E85348_F277_scaffold_11 897 2072" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14400102..14400930) /note="source:CACAO_M_E12544_F89_scaffold_3 1 838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14401918..14403445) /note="source:CACAO_M_E84368_F4_scaffold_10 4610 6138" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14403446..14406885 /note="source:CACAO_M_E14534_F323_scaffold_3 1 3440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14406886..14406991) /note="source:CACAO_M_E84368_F4_scaffold_10 11579 11684" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14409374..14420208 /note="source:CACAO_M_E14537_F4_scaffold_3 1 10835" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14423710..14423722 /note="source:INTACT591_F264_scaffold_1-int 10697 10701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14423723..14424099) /note="source:CACAO_M_E4554_F15_scaffold_2 10353 10707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14425996..14426610) /note="source:CACAO_M_E4554_F15_scaffold_2 1870 2485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14426970..14427297) /note="source:INTACT584_F15_scaffold_3-int 9395 9722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14428173..14428508) /note="source:INTACT139F_F15_scaffold_2-int 7693 8024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14428214..14439033 /note="source:CACAO_M_E48700_F15_scaffold_6 18 10592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14439034..14440006) /note="source:scaffold_5_CACTA_0601 14910 15901" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14440913..14444529 /note="source:scaffold_2_CACTA_0275 3347 6938" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14448927..14450266 /note="source:INTACT714_F310_scaffold_9-int 8524 9843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14450267..14451148 /note="source:CACAO_M_E58324_F9_scaffold_9 1 860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14451289..14451676 /note="source:scaffold_8_CACTA_0859 17549 17937" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14451998..14452388 /note="source:INTACT714_F310_scaffold_9-int 9808 10191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14452492..14452629 /note="source:INTACT714_F310_scaffold_9-int 1 138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14454005..14454994 /note="source:scaffold_2_CACTA_0275 1855 2844" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14454995..14464386 /note="source:INTACT699_F86_scaffold_3-int 1 9392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14464387..14464920 /note="source:INTACT591_F264_scaffold_1-int 20742 21282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14468498..14469897) /note="source:scaffold_8_CACTA_0859 16513 17937" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14471283..14474233 /note="source:CACAO_M_E14555_F143_scaffold_3 1 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14474972..14483096 /locus_tag="TCM_013568" /note="dbxref CacaoGD:Thecc1EG013568" mRNA join(14474972..14475133,14475236..14475358, 14482692..14483096) /locus_tag="TCM_013568" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb06g023260.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400026687" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5672t9" CDS join(14474984..14475133,14475236..14475358, 14482692..14482871) /locus_tag="TCM_013568" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21617.1" /db_xref="Phytozome:PGSC0003DMP400026687" /translation="MCFLKAWLLCRKSNDWSNLKLEAQHQIKKLFGLKIRMGVLLLGN SCSCSLWAWKKRSPFSLNCNGNNSKRVLVKAFFFDPSEVPILKQAVKEPVAFMGGMFA GILRLDLNEDPLKEWVARTVEASASDVEGISGKGFREEEDTPQQIEIE" mobile_element 14485153..14485317 /note="source:INTACT505_F28_scaffold_3-int 9804 9943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14485189..14485684) /note="source:CACAO_M_E23991_F4_scaffold_4 7340 7823" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14485785..14485881 /note="source:CACAO_M_E52955_F369_scaffold_8 983 1066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14487032..14487174 /note="source:scaffold_9_CACTA_0924 4471 4627" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14487172..14491110) /note="source:INTACT39F_F22_scaffold_1-int 3568 7437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14491110..14492113 /note="source:scaffold_9_CACTA_0924 4622 5613" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14492133..14493601 /note="source:CACAO_M_E33018_F264_scaffold_4 1727 3197" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14493883..14493962 /note="source:INTACT785_F332_scaffold_2-int 3466 3545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14495436..14497850 /note="source:scaffold_5_CACTA_0585 12022 14370" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14498502..14500204 /note="source:CACAO_M_E33018_F264_scaffold_4 4066 5728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14500179..14500358) /note="source:CACAO_M_S_E100844_F265_scaffold_9 1551 1714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14501837..14501926 /note="source:scaffold_9_CACTA_0924 5611 5699" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14501927..14502578 /note="source:CACAO_M_E14113_F106_scaffold_3 1 653" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14502579..14505324) /note="source:CACAO_M_E50636_F369_scaffold_7 1 2741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14505325..14506353 /note="source:INTACT8_F106_scaffold_3-int 7179 7824" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14506352..14508305 /note="source:scaffold_4_CACTA_0490 10 1950" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14508533..14510294 /note="source:CACAO_M_E14569_F121_scaffold_3 1 1762" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14510527..14510575) /note="source:scaffold_1_CACTA_0024 3013 3061" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14510577..14512659 /note="source:CACAO_M_E14113_F106_scaffold_3 18692 20784" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14513446..14513734 /note="source:CACAO_M_E42343_F106_scaffold_5 1812 2102" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14513841..14515661 /note="source:CACAO_M_E42343_F106_scaffold_5 2082 3915" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14515649..14516662) /note="source:CACAO_M_S_E4787_F60_scaffold_1 5368 7174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14516323..14517645 /note="source:INTACT8_F106_scaffold_3-int 4172 5513" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14517638..14519168 /note="source:scaffold_9_CACTA_0924 4627 6153" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14519942..14521702) /note="source:CACAO_M_S_E51582_F265_scaffold_4 2 1733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14524872..14524906 /note="source:scaffold_5_CACTA_0585 6346 6380" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14526371..14528100 /note="source:CACAO_M_E43498_F302_scaffold_5 1 1733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14528088..14528734 /note="source:INTACT570_F260_scaffold_5-int 8563 9291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14528697..14529798) /note="source:CACAO_M_E1841_F5_scaffold_1 22016 22974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14530414..14530446) /note="source:INTACT224_F176_scaffold_8-int 2520 2552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14530436..14530487) /note="source:scaffold_4_CACTA_0490 4568 4618" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14530447..14532599) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6012 9510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14533340..14535051 /note="source:CACAO_M_E14578_F60_scaffold_3 1 1712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14537482..14538558 /note="source:CACAO_M_E69460_F12_scaffold_9 1 1074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14539180..14541661) /note="source:INTACT146F_F14_scaffold_2-int 3170 5725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14540326..14542414 /note="source:CACAO_M_S_E84376_F22_scaffold_6 10273 12328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14542413..14545060) /note="source:CACAO_M_E33282_F13_scaffold_4 6450 9079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14545060..14545387) /note="source:CACAO_M_S_E109853_F60_scaffold_9 10758 11087" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14545388..14548097 /note="source:CACAO_M_E5326_F22_scaffold_2 18420 22673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14548064..14548322) /note="source:CACAO_M_S_E109853_F60_scaffold_9 10504 10762" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14548323..14549950 /note="source:CACAO_M_S_E121934_F7_scaffold_10 1 1629" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14549951..14551373) /note="source:INTACT213F_F15_scaffold_3-int 9589 11012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14550319..14552847 /note="source:CACAO_M_E13013_F15_scaffold_3 157 2737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14552848..14554225 /note="source:CACAO_M_S_E16290_F7_scaffold_2 1605 2987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14554226..14555216) /note="source:CACAO_M_S_E109853_F60_scaffold_9 9520 10508" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14555217..14558713 /note="source:CACAO_M_E14593_F323_scaffold_3 1 3441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14558714..14563517) /note="source:CACAO_M_S_E109853_F60_scaffold_9 3174 9468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14564242..14564790 /note="source:INTACT33_F7_scaffold_5-int 14704 15148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14564941..14565259 /note="source:CACAO_M_E33282_F13_scaffold_4 10299 10617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14565262..14565373) /note="source:CACAO_M_S_E109853_F60_scaffold_9 16587 16698" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14565372..14565449 /note="source:CACAO_M_E65323_F12_scaffold_9 10659 10726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14565419..14565808) /note="source:CACAO_M_E53201_F9_scaffold_8 6615 7004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14567856..14568153) /note="source:CACAO_M_E53201_F9_scaffold_8 5021 5318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14568193..14568273) /note="source:scaffold_4_CACTA_0494 1548 1628" /mobile_element_type="transposon:TIR/CACTA" gene 14575279..14603853 /locus_tag="TCM_013579" /note="dbxref CacaoGD:Thecc1EG013579" mRNA join(14575279..14575404,14579497..14579942, 14582750..14583006,14603830..14603853) /locus_tag="TCM_013579" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element 14575618..14576032 /note="source:CACAO_M_E11746_F9_scaffold_2 1 416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14576044..14579665 /note="source:CACAO_M_S_E32835_F9_scaffold_4 4225 7856" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(14579843..14579942,14582750..14582907) /locus_tag="TCM_013579" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21618.1" /translation="MYVSKQLVEAQITHCTKVIDGGSSHPYAEVTGEVNAVNSVTSEV FIENHPKYPLKASLVANFKRDDDELLEYVNMLDASSWILRA" mobile_element 14583875..14586175 /note="source:scaffold_5_CACTA_0612 8694 11035" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14585942..14586836) /note="source:CACAO_M_E5326_F22_scaffold_2 19810 20710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14588031..14590353) /note="source:scaffold_3_CACTA_0382 9618 11900" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14591135..14591350) /note="source:CACAO_M_S_E90022_F9_scaffold_8 14278 14494" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14591351..14597741 /note="source:INTACT215F_F14_scaffold_3-int 1 6391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14601026..14609701 /note="source:INTACT215F_F14_scaffold_3-int 6710 15385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14609641..14609707) /note="source:CACAO_M_E42514_F40_scaffold_5 14439 14508" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14609697..14616576) /note="source:INTACT487_F4_scaffold_2-int 1660 8540" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14616815..14617363 /note="source:CACAO_M_E53135_F19_scaffold_8 2427 2980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14617587..14620698 /note="source:CACAO_M_E53135_F19_scaffold_8 3261 6321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14620700..14622363 /note="source:CACAO_M_S_E84261_F4_scaffold_6 197 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14623916..14623926 /note="source:CACAO_M_S_E89272_F5_scaffold_8 10925 10936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14623927..14626366) /note="source:CACAO_M_E4753_F17_scaffold_2 12341 14848" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14627709..14627916) /note="source:CACAO_M_E53135_F19_scaffold_8 4717 4919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14629254..14629797) /note="source:CACAO_M_E53135_F19_scaffold_8 2427 3005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14630023..14632975 /note="source:INTACT694_F17_scaffold_5-int 2477 5476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14632947..14633014 /note="source:INTACT365_F17_scaffold_9-int 1436 1504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14632974..14633010) /note="source:INTACT35_F17_scaffold_5-int 1 37" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14636233..14636291 /note="source:CACAO_M_E3884_F22_scaffold_1 17748 17804" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14636535..14640084) /locus_tag="TCM_013584" /note="dbxref CacaoGD:Thecc1EG013584" mRNA complement(join(14636535..14637438,14638996..14639098, 14639285..14639383,14639817..14640084)) /locus_tag="TCM_013584" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.29 coverage" CDS complement(join(14637253..14637438,14638996..14639098, 14639285..14639383,14639817..14639857)) /locus_tag="TCM_013584" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21619.1" /translation="MHVMQDALFNALPWMVVSKDDGISLACDSRLHCFGAIHRVSSDD DFEEDHFTIMNRIMSDMFQPRVGQRLVQIRCDTLATKNIKKSHPKSYKKKAVMATWSD SGKSQNNEEEEVGNLCHMALDDPMDESIEIKCTTKRPTMP" mobile_element complement(14641482..14643780) /note="source:scaffold_3_CACTA_0382 9598 11877" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14647248..14648303) /note="source:CACAO_M_E5899_F5_scaffold_2 2904 4557" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14648304..14651259 /note="source:CACAO_M_E14619_F33_scaffold_3 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14651260..14653160 /note="source:CACAO_M_E56815_F15_scaffold_8 1049 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14656267..14657491) /note="source:CACAO_M_E84368_F4_scaffold_10 11984 13208" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14657502..14660234 /note="source:CACAO_M_E14624_F369_scaffold_3 1 2733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14660235..14664435) /note="source:CACAO_M_E84368_F4_scaffold_10 7783 11977" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14664430..14667384 /note="source:CACAO_M_E10603_F306_scaffold_2 4817 7770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14667383..14667963) /note="source:CACAO_M_E84368_F4_scaffold_10 7215 7794" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14667964..14679362 /note="source:CACAO_M_S_E19828_F19_scaffold_3 1 11399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14679754..14682923 /note="source:CACAO_M_S_E19828_F19_scaffold_3 11400 14569" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14682924..14684675) /note="source:CACAO_M_E84368_F4_scaffold_10 5458 7219" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14684656..14687123) /note="source:INTACT424_F211_scaffold_12-int 1 2455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14687124..14688087) /note="source:INTACT686_F300_scaffold_3-int 1 964" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14688527..14691307 /note="source:CACAO_M_E44365_F15_scaffold_6 1 5327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14691471..14694410 /note="source:CACAO_M_E14637_F44_scaffold_3 1 2940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14694411..14694467) /note="source:CACAO_M_S_E85957_F12_scaffold_7 6801 6860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14704371..14704904 /note="source:INTACT242_F12_scaffold_1-int 9530 9984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14704875..14707485 /note="source:INTACT242_F12_scaffold_1-int 1927 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14710306..14710687 /note="source:INTACT280_F60_scaffold_5-int 6791 7170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14714020..14714714) /note="source:CACAO_M_E58324_F9_scaffold_9 372 1066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14714710..14715682) /note="source:INTACT172_F47_scaffold_2-int 5445 6422" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14715683..14721183) /note="source:INTACT172_F47_scaffold_2-int 48 5508" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14721182..14721276 /note="source:INTACT403F_F355_scaffold_4-int 1251 1345" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14722962..14724225 /note="source:INTACT296_F13_scaffold_9-int 11766 13068" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14725173..14725398 /note="source:CACAO_M_S_E31635_F14_scaffold_3 2780 3040" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14725435..14726400 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3257 4197" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14726384..14726821 /note="source:INTACT296_F13_scaffold_9-int 13870 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14726847..14728035 /note="source:CACAO_M_E42395_F3_scaffold_5 7344 8533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14728036..14729500 /note="source:CACAO_M_E71555_F15_scaffold_10 1 1102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14729601..14731587) /note="source:CACAO_M_E12963_F15_scaffold_3 1 1985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14731588..14733696 /note="source:CACAO_M_E42395_F3_scaffold_5 8742 10853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14736201..14736464 /note="source:CACAO_M_S_E31635_F14_scaffold_3 2780 3040" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14736507..14737469 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3250 4200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14737451..14737889 /note="source:INTACT280_F60_scaffold_5-int 13870 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14738251..14738974 /note="source:CACAO_M_E14113_F106_scaffold_3 4877 5601" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14739023..14739091) /note="source:INTACT280_F60_scaffold_5-int 10278 10345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14739175..14739536) /note="source:INTACT280_F60_scaffold_5-int 9930 10278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14739528..14742055) /note="source:CACAO_M_E42395_F3_scaffold_5 15055 17501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14741108..14742179 /note="source:CACAO_M_E22484_F328_scaffold_3 13204 14253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14744042..14745164 /note="source:CACAO_M_E58324_F9_scaffold_9 7669 8768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14745168..14747259) /note="source:CACAO_M_E14113_F106_scaffold_3 10676 12774" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14747224..14747244) /note="source:CACAO_M_E58324_F9_scaffold_9 22875 23019" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14747245..14747443 /note="source:CACAO_M_E14113_F106_scaffold_3 4092 4295" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14747453..14750103 /note="source:INTACT741_F17_scaffold_3-int 5114 7715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14750104..14753081) /note="source:CACAO_M_E12931_F245_scaffold_3 1 2980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14753082..14755029 /note="source:INTACT741_F17_scaffold_3-int 7711 9646" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14755509..14771761 /locus_tag="TCM_013595" /note="dbxref CacaoGD:Thecc1EG013595" mRNA join(14755509..14756437,14756531..14756667, 14758321..14758422,14759213..14759305,14762424..14762496, 14770975..14771571) /locus_tag="TCM_013595" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30009.m000823" /inference="similar to AA sequence:Phytozome:POPTR_0015s05560.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00623t00001" mRNA join(14755792..14756437,14756531..14756667, 14758321..14758422,14759213..14759305,14760988..14761234) /locus_tag="TCM_013595" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30009.m000823" /inference="similar to AA sequence:ricco:30009.m000823" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc729t4; inference alignment:Newbler:10:TSA:cgbaP1_g00623t00001" mRNA join(14755854..14756437,14756531..14756667, 14758321..14758422,14759213..14759305,14770975..14771657) /locus_tag="TCM_013595" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30009.m000823" /inference="similar to AA sequence:ricco:30009.m000823" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3318t2; inference alignment:Newbler:10:TSA:cgbaP1_g00623t00001" CDS join(14756017..14756437,14756531..14756667, 14758321..14758422,14759213..14759305,14762424..14762496, 14770975..14771237) /locus_tag="TCM_013595" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /protein_id="EOY21620.1" /db_xref="Phytozome:POPTR_0015s05560.1" /db_xref="TAIR:AT4G27760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FQM0" /translation="MAKKKQGLGWMEWLRGWMYVIHEMLFQRIMASHLQNPLALPPVN DLTCIVTGATSGIGREMARQLAEAGAHVVMAVRNPKAAHELINRWSESWHGLPLNIEV MELDLLSLDSVVTFANAWNARLGPLNVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA PALLSVLLLPSLIRGSPSRIINVNSVMHYVGFVDTEDMNAVSGKRKYSSLLGYTSSKL AQVMFSSVLHKRLPIEAGVNVVCVSPGIVHTNVARDLPRIVQAAYHLIPYFIFSAQEG SRSALFSATDPQIPEYCELLKADEWPVCAFISQDCRPTNPSEEAHNIETSFEVWEKTL EMIGLPSDAVERFIEGNEVTCRYGTRSD" CDS join(14756017..14756437,14756531..14756667, 14758321..14758422,14759213..14759305,14770975..14771037) /locus_tag="TCM_013595" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30009.m000823" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 3" /protein_id="EOY21622.1" /db_xref="TAIR:AT4G27760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FQM0" /translation="MAKKKQGLGWMEWLRGWMYVIHEMLFQRIMASHLQNPLALPPVN DLTCIVTGATSGIGREMARQLAEAGAHVVMAVRNPKAAHELINRWSESWHGLPLNIEV MELDLLSLDSVVTFANAWNARLGPLNVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA PALLSVLLLPSLIRGSPSRIINVNSVMHYVGFVDTEDMNAVSGKRKYSSLLGYTSSKL AQVMFSSVLHKRLPIEAGVNVVCVSPGIVHTNVVLGVLFSQPLIPRFRSTVNC" CDS join(14756017..14756437,14756531..14756667, 14758321..14758422,14759213..14759305,14760988..14761002) /locus_tag="TCM_013595" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30009.m000823" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 4" /protein_id="EOY21623.1" /db_xref="TAIR:AT4G27760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FQM0" /translation="MAKKKQGLGWMEWLRGWMYVIHEMLFQRIMASHLQNPLALPPVN DLTCIVTGATSGIGREMARQLAEAGAHVVMAVRNPKAAHELINRWSESWHGLPLNIEV MELDLLSLDSVVTFANAWNARLGPLNVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA PALLSVLLLPSLIRGSPSRIINVNSVMHYVGFVDTEDMNAVSGKRKYSSLLGYTSSKL AQVMFSSVLHKRLPIEAGVNVVCVSPGIVHTNVVCGW" mRNA join(14756099..14756437,14758370..14758422, 14759213..14759305,14762424..14762496,14770975..14771761) /locus_tag="TCM_013595" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30009.m000823" /inference="similar to AA sequence:frave:gene26851" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc436t11; inference alignment:Newbler:10:TSA:cgbaP1_g00623t00001" CDS join(14756104..14756437,14758370..14758422, 14759213..14759305,14762424..14762496,14770975..14771237) /locus_tag="TCM_013595" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene26851" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /protein_id="EOY21621.1" /db_xref="TAIR:AT4G27760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FQM0" /translation="MASHLQNPLALPPVNDLTCIVTGATSGIGREMARQLAEAGAHVV MAVRNPKAAHELINRWSESWHGLPLNIEVMELDLLSLDSVVTFANAWNARLGPLNVLI NNAGIFSIGGKRKYSSLLGYTSSKLAQVMFSSVLHKRLPIEAGVNVVCVSPGIVHTNV ARDLPRIVQAAYHLIPYFIFSAQEGSRSALFSATDPQIPEYCELLKADEWPVCAFISQ DCRPTNPSEEAHNIETSFEVWEKTLEMIGLPSDAVERFIEGNEVTCRYGTRSD" mobile_element complement(14757639..14757681) /note="source:CACAO_M_E22186_F143_scaffold_3 9976 10022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14772329..14772975) /note="source:CACAO_M_S_E50960_F369_scaffold_4 14379 15024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14776033..14778667 /note="source:CACAO_M_E14653_F369_scaffold_3 1 2635" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14783186..14789018 /locus_tag="TCM_013596" /note="dbxref CacaoGD:Thecc1EG013596" mRNA join(14783186..14783310,14784057..14784489, 14784609..14785172,14785920..14787194,14787294..14787364, 14788076..14788995) /locus_tag="TCM_013596" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s14130.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s14130.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3064t3; alternateUTRof:Thecc1EG013596t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1353t1" mRNA join(14784080..14784489,14784609..14785172, 14785920..14787194,14787294..14787364,14788076..14789003) /locus_tag="TCM_013596" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s14130.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s14130.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1353t1" mRNA join(14784123..14784489,14784609..14785172, 14785920..14787194,14787294..14787364,14788076..14788170, 14788237..14789018) /locus_tag="TCM_013596" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s14130.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s14130.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1377t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1353t1" CDS join(14784406..14784489,14784609..14785172, 14785920..14787194,14787294..14787364,14788076..14788370) /locus_tag="TCM_013596" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21624.1" /db_xref="Phytozome:POPTR_0004s14130.2" /db_xref="TAIR:AT4G27510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H418" /translation="MGPKRGRKKRRSCLFDFQTLISSISSPQGLKPETMEGLYLLLLN LGCSNSESNLNFSETEFNLNEFKIKFKDIHELSNVLFDKLGAKFNELFSGLNDVSAHP VQGQSIFHVNVKAAIKELTSLLRCCIVVFKLLVLDQKLVIEKGRILLGILRRCVSVKL KGGNGKSCPNFEKEVSHECMYVDDDATTSLFEHLVTSISFLEPCNPFHAILCTVLEVF ADELLTHESVRQYLLVVDSLSCVNEFLFIRHFGPGNIGSVLEVFSAHFILSIPDDQAF KDFLNRLFWLPDNNFRVPEMTLTTALSLLLNPIMLSAPKMFQAYLILLVSEVIGSGIL FEHMIISSELRSYLAAFERSVALYTRHMSNLNMKGYPIVDDDSFVKSHFLASNSQMDF ESCLLPATREKIHNLITKCENVWNSCLSNTLLKTRSDLVAASVAYTKESLHVIEESSR DEILSILSCIILRGSSDDVDDTLLHKKEDTSPQDICLLASILKLMSSSMLQAVRILTK GRNSGSLKTLENVALSKEYDFLVATFNCFQQFSVRLPVQKFLHDMVEIQPTRHKKFKW MLVHFSGLLSLSYASGLDFLVKNCIFTLMILLNFFVFEEGDLHALGSLLGSGVETSSH KSRSKVRKSESCHKAREVLAGRKSSRAVALKFQKIRTLYLGLDSSTSLEHSPIVNHVE SALSIEENTGRTCNGEIFLRCISEGSRNSSDIDDLADFIECQPGKDYSDWLRSREKFR RWKAEKMANLRWKKRRTCLKRA" CDS join(14784406..14784489,14784609..14785172, 14785920..14787194,14787294..14787364,14788076..14788370) /locus_tag="TCM_013596" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21625.1" /db_xref="Phytozome:POPTR_0004s14130.2" /db_xref="TAIR:AT4G27510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H418" /translation="MGPKRGRKKRRSCLFDFQTLISSISSPQGLKPETMEGLYLLLLN LGCSNSESNLNFSETEFNLNEFKIKFKDIHELSNVLFDKLGAKFNELFSGLNDVSAHP VQGQSIFHVNVKAAIKELTSLLRCCIVVFKLLVLDQKLVIEKGRILLGILRRCVSVKL KGGNGKSCPNFEKEVSHECMYVDDDATTSLFEHLVTSISFLEPCNPFHAILCTVLEVF ADELLTHESVRQYLLVVDSLSCVNEFLFIRHFGPGNIGSVLEVFSAHFILSIPDDQAF KDFLNRLFWLPDNNFRVPEMTLTTALSLLLNPIMLSAPKMFQAYLILLVSEVIGSGIL FEHMIISSELRSYLAAFERSVALYTRHMSNLNMKGYPIVDDDSFVKSHFLASNSQMDF ESCLLPATREKIHNLITKCENVWNSCLSNTLLKTRSDLVAASVAYTKESLHVIEESSR DEILSILSCIILRGSSDDVDDTLLHKKEDTSPQDICLLASILKLMSSSMLQAVRILTK GRNSGSLKTLENVALSKEYDFLVATFNCFQQFSVRLPVQKFLHDMVEIQPTRHKKFKW MLVHFSGLLSLSYASGLDFLVKNCIFTLMILLNFFVFEEGDLHALGSLLGSGVETSSH KSRSKVRKSESCHKAREVLAGRKSSRAVALKFQKIRTLYLGLDSSTSLEHSPIVNHVE SALSIEENTGRTCNGEIFLRCISEGSRNSSDIDDLADFIECQPGKDYSDWLRSREKFR RWKAEKMANLRWKKRRTCLKRA" CDS join(14784406..14784489,14784609..14785172, 14785920..14787194,14787294..14787364,14788076..14788170, 14788237..14788370) /locus_tag="TCM_013596" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY21626.1" /db_xref="Phytozome:POPTR_0004s14130.2" /db_xref="TAIR:AT4G27510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H418" /translation="MGPKRGRKKRRSCLFDFQTLISSISSPQGLKPETMEGLYLLLLN LGCSNSESNLNFSETEFNLNEFKIKFKDIHELSNVLFDKLGAKFNELFSGLNDVSAHP VQGQSIFHVNVKAAIKELTSLLRCCIVVFKLLVLDQKLVIEKGRILLGILRRCVSVKL KGGNGKSCPNFEKEVSHECMYVDDDATTSLFEHLVTSISFLEPCNPFHAILCTVLEVF ADELLTHESVRQYLLVVDSLSCVNEFLFIRHFGPGNIGSVLEVFSAHFILSIPDDQAF KDFLNRLFWLPDNNFRVPEMTLTTALSLLLNPIMLSAPKMFQAYLILLVSEVIGSGIL FEHMIISSELRSYLAAFERSVALYTRHMSNLNMKGYPIVDDDSFVKSHFLASNSQMDF ESCLLPATREKIHNLITKCENVWNSCLSNTLLKTRSDLVAASVAYTKESLHVIEESSR DEILSILSCIILRGSSDDVDDTLLHKKEDTSPQDICLLASILKLMSSSMLQAVRILTK GRNSGSLKTLENVALSKEYDFLVATFNCFQQFSVRLPVQKFLHDMVEIQPTRHKKFKW MLVHFSGLLSLSYASGLDFLVKNCIFTLMILLNFFVFEEGDLHALGSLLGSGVETSSH KSRSKVRKSESCHKAREVLAGRKSSRAVALKFQKIRTLYLGLDSSTSLEHSPIVNHVE SALSIEENTGRTCNDFIECQPGKDYSDWLRSREKFRRWKAEKMANLRWKKRRTCLKRA " gene 14788632..14877996 /locus_tag="TCM_013597" /note="dbxref CacaoGD:Thecc1EG013597" mRNA join(14788632..14788756,14805476..14805807, 14806180..14806421,14863713..14863789,14871575..14871677, 14877728..14877996) /locus_tag="TCM_013597" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018120t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" mobile_element 14790809..14790914 /note="source:scaffold_8_CACTA_0859 15826 15934" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14790909..14791142 /note="source:scaffold_8_CACTA_0859 16268 16495" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14798290..14801341 /note="source:scaffold_9_CACTA_0931 1 3057" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14802447..14805550 /note="source:CACAO_M_E14658_F15_scaffold_3 1 3104" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(14805511..14805807,14806180..14806356) /locus_tag="TCM_013597" /note="paralog of Thecc1EG018120t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21627.1" /translation="MYVMTCIYRVGFYKLGNVVWNKARLVAKSYDQEDGIDYNKTFTP LVRLEAIRLLIAYARFMNFNVFQMDFKSTFLNGFIKEEVYVEQPPGFEVFDKIDHSIG TPMSPSTKLDKDDKGKNVDQKLYRGMIGSLLYLIASRLDILFNVCLCATFQSCSK" mobile_element 14806856..14806883 /note="source:INTACT407F_F356_scaffold_4-int 5150 5159" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14806884..14809646 /note="source:CACAO_M_E14659_F15_scaffold_3 1 2763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14813132..14814812) /note="source:INTACT506_F233_scaffold_3-int 1641 2813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14814310..14818060 /note="source:INTACT424_F211_scaffold_12-int 1121 4890" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14814821..14819418) /note="source:CACAO_M_S_E84376_F22_scaffold_6 12353 16981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14820715..14822809 /note="source:CACAO_M_S_E19866_F106_scaffold_3 1 2095" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14823675..14824377 /note="source:CACAO_M_E58324_F9_scaffold_9 7667 8375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14823797..14826169) /note="source:CACAO_M_S_E5046_F335_scaffold_1 18757 23170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14824853..14826179 /note="source:CACAO_M_E58324_F9_scaffold_9 8945 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14826176..14829962 /note="source:scaffold_3_CACTA_0388 1 3194" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14831083..14839344 /note="source:scaffold_3_CACTA_0388 2784 11045" /mobile_element_type="transposon:TIR/CACTA" gene complement(14836512..14841740) /locus_tag="TCM_013600" /note="dbxref CacaoGD:Thecc1EG013600" mRNA complement(join(14836512..14836598,14840982..14841740)) /locus_tag="TCM_013600" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(14841017..14841217) /locus_tag="TCM_013600" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21628.1" /translation="MAVSRCWPTSKIKRLIPRTSKSLTLPDHLWPSHIYILQVVAPTK PNLPSATQRFSSQSSLVHEGHN" mobile_element 14841998..14842072 /note="source:INTACT1372F_F96_scaffold_8-int 10429 10504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14845016..14845187 /note="source:INTACT39F_F22_scaffold_1-int 5547 5698" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14846269..14847533 /note="source:scaffold_1_CACTA_0028 10187 11495" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14848488..14848952) /note="source:CACAO_M_E33213_F12_scaffold_4 9386 9859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14848941..14849014 /note="source:CACAO_M_E22186_F143_scaffold_3 9937 10004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14849046..14849105 /note="source:CACAO_M_E22186_F143_scaffold_3 9950 9991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14849056..14850265) /note="source:CACAO_M_E33213_F12_scaffold_4 8120 9309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14850265..14850517 /note="source:scaffold_4_CACTA_0497 10156 10377" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14850771..14853516 /note="source:CACAO_M_E85576_F96_scaffold_11 1 2754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14855451..14856230) /note="source:INTACT300_F7_scaffold_5-int 5570 6368" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14855544..14855554) /note="source:scaffold_1_CACTA_0028 7989 8073" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14855555..14858295 /note="source:CACAO_M_E50697_F15_scaffold_7 1 2738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14858296..14858650) /note="source:scaffold_1_CACTA_0028 4961 7988" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14858349..14858726 /note="source:CACAO_M_E43590_F7_scaffold_5 9278 9662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14858812..14859054 /note="source:scaffold_3_CACTA_0388 8230 8453" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14859337..14862330 /note="source:CACAO_M_E14672_F7_scaffold_3 1 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14867521..14867600 /note="source:CACAO_M_E58715_F13_scaffold_9 5984 6062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14869167..14869237) /note="source:INTACT753_F322_scaffold_5-int 8036 8108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14885118..14885823) /note="source:scaffold_9_CACTA_0929 10850 11558" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14886265..14889163 /note="source:CACAO_M_E14675_F15_scaffold_3 1 2867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14889183..14890336 /note="source:CACAO_M_E52239_F256_scaffold_7 21258 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14890841..14893965 /note="source:CACAO_M_E14509_F378_scaffold_3 1 3158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14893910..14893974) /note="source:CACAO_on_S_E58_scaffold_2 1932 1995" /mobile_element_type="transposon:TIR/Mutator" mobile_element 14896294..14896340 /note="source:scaffold_5_CACTA_0591 10053 10101" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14896342..14896986) /note="source:scaffold_4_CACTA_0493 982 1625" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14897105..14897300) /note="source:scaffold_2_CACTA_0262 7606 7801" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14898291..14898564) /note="source:scaffold_4_CACTA_0493 3806 4067" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14898560..14899099) /note="source:scaffold_2_CACTA_0262 5418 5950" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14899342..14899793 /note="source:scaffold_4_CACTA_0493 4079 4515" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14899790..14899915 /note="source:scaffold_4_CACTA_0493 4757 4871" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14899916..14900771 /note="source:CACAO_M_E24592_F195_scaffold_4 19420 20290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14900182..14900851) /note="source:scaffold_4_CACTA_0493 460 1129" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14900852..14903553 /note="source:CACAO_M_S_E19887_F369_scaffold_3 1 2702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14903908..14905231 /note="source:CACAO_M_E24592_F195_scaffold_4 2 1326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14905986..14906033) /note="source:scaffold_4_CACTA_0493 1585 1633" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14906220..14907071) /note="source:scaffold_4_CACTA_0493 4403 5254" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14912038..14917041 /note="source:INTACT40_F10_scaffold_3-int 1 5004" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14922874..14922918) /note="source:scaffold_4_CACTA_0493 1582 1627" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14923033..14923350) /note="source:scaffold_4_CACTA_0493 1267 1585" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14923357..14924551) /note="source:scaffold_4_CACTA_0493 3889 5125" /mobile_element_type="transposon:TIR/CACTA" gene 14925403..14959830 /locus_tag="TCM_013603" /note="dbxref CacaoGD:Thecc1EG013603" mRNA join(14925403..14926113,14926215..14926264, 14926364..14926451,14926853..14926969,14931135..14931202, 14934684..14935137) /locus_tag="TCM_013603" /product="Tetratricopeptide repeat-containing protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G17670.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05480.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1142t6" mRNA join(14925517..14926113,14926212..14926264, 14926364..14926451,14926853..14926969,14931135..14931257, 14936026..14936198,14959604..14959830) /locus_tag="TCM_013603" /product="Tetratricopeptide repeat-containing protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G17670.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05480.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3153t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8386t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1142t6" mRNA join(14925517..14926113,14926215..14926264, 14926364..14926451,14926853..14926969,14931135..14931257, 14936043..14936360) /locus_tag="TCM_013603" /product="Tetratricopeptide repeat-containing protein isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT3G17670.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029370001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3153t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8386t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1142t6" mRNA join(14925517..14926113,14926215..14926264, 14926364..14926451,14926853..14926969,14931135..14931257, 14934633..14935114) /locus_tag="TCM_013603" /product="Tetratricopeptide repeat-containing protein isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT3G17670.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029370001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3153t4; alternateUTRof:Thecc1EG013603t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8386t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1142t6" CDS join(14925685..14926113,14926215..14926264, 14926364..14926451,14926853..14926969,14931135..14931202, 14934684..14934843) /locus_tag="TCM_013603" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-containing protein isoform 1" /protein_id="EOY21629.1" /db_xref="Phytozome:POPTR_0015s05480.1" /db_xref="TAIR:AT3G17670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N372" /translation="MHLWVTSSTYPPHLRFPVKSEAQVEEIRVCTNRTCRRQGSMQTF HILTALAPPDVSVKSCGCLGRCGAGPNVALLPDGQIVGHCGTAAGAAELMVGLWHGGG VGDACNKSKSKTSLDALALRMRAEALVDEGNFSKAERLLSQAIDLKPFGGVHILYKKR SVARLAIHNYSGALEDAAESLTLAPNYAGAYICQGDAFLAMDQYDAAQKSYSTCLEID PSIRRSKSFKIRIAKLEEKLATINMSHDSISETKGVDRSNDSLTLEPPNLNTSTHEQE QYESKRPRLNPEEIDAFHIELILDYDQ" CDS join(14925685..14926113,14926212..14926264, 14926364..14926451,14926853..14926969,14931135..14931206) /locus_tag="TCM_013603" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-containing protein isoform 2" /protein_id="EOY21630.1" /db_xref="Phytozome:POPTR_0015s05480.1" /db_xref="TAIR:AT3G17670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N372" /translation="MHLWVTSSTYPPHLRFPVKSEAQVEEIRVCTNRTCRRQGSMQTF HILTALAPPDVSVKSCGCLGRCGAGPNVALLPDGQIVGHCGTAAGAAELMVGLWHGGG VGDACNKSKSKTSLDALALRMRAEALVDEGNFSKAERLLSQQAIDLKPFGGVHILYKK RSVARLAIHNYSGALEDAAESLTLAPNYAGAYICQGDAFLAMDQYDAAQKSYSTCLEI DPSIRRSKSFKIRIAKLEEKLATINMSHDSISET" CDS join(14925685..14926113,14926215..14926264, 14926364..14926451,14926853..14926969,14931135..14931206) /locus_tag="TCM_013603" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-containing protein isoform 3" /protein_id="EOY21631.1" /db_xref="Phytozome:GSVIVT01029370001" /db_xref="TAIR:AT3G17670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N372" /translation="MHLWVTSSTYPPHLRFPVKSEAQVEEIRVCTNRTCRRQGSMQTF HILTALAPPDVSVKSCGCLGRCGAGPNVALLPDGQIVGHCGTAAGAAELMVGLWHGGG VGDACNKSKSKTSLDALALRMRAEALVDEGNFSKAERLLSQAIDLKPFGGVHILYKKR SVARLAIHNYSGALEDAAESLTLAPNYAGAYICQGDAFLAMDQYDAAQKSYSTCLEID PSIRRSKSFKIRIAKLEEKLATINMSHDSISET" CDS join(14925685..14926113,14926215..14926264, 14926364..14926451,14926853..14926969,14931135..14931206) /locus_tag="TCM_013603" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-containing protein isoform 3" /protein_id="EOY21632.1" /db_xref="Phytozome:GSVIVT01029370001" /db_xref="TAIR:AT3G17670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N372" /translation="MHLWVTSSTYPPHLRFPVKSEAQVEEIRVCTNRTCRRQGSMQTF HILTALAPPDVSVKSCGCLGRCGAGPNVALLPDGQIVGHCGTAAGAAELMVGLWHGGG VGDACNKSKSKTSLDALALRMRAEALVDEGNFSKAERLLSQAIDLKPFGGVHILYKKR SVARLAIHNYSGALEDAAESLTLAPNYAGAYICQGDAFLAMDQYDAAQKSYSTCLEID PSIRRSKSFKIRIAKLEEKLATINMSHDSISET" mobile_element complement(14932378..14934147) /note="source:INTACT335_F1_scaffold_1-int 769 2555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14934159..14937239 /note="source:CACAO_on_E26_scaffold_4 115 3204" /mobile_element_type="transposon:TIR/hAT" gene 14935277..14935687 /locus_tag="TCM_013605" /note="dbxref CacaoGD:Thecc1EG013605" mRNA 14935277..14935687 /locus_tag="TCM_013605" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s15905.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045904t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1125t3" CDS 14935391..14935582 /locus_tag="TCM_013605" /note="paralog of Thecc1EG045904t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21633.1" /translation="MLKFLRSYNDKVHKLVLKNAPRVAKYTSNYVQKEILHILANMVR NSIREEVGNAKWCIIIDEA" gene 14936885..14959831 /locus_tag="TCM_013607" /note="dbxref CacaoGD:Thecc1EG013607" mRNA join(14936885..14937066,14949157..14949717, 14958311..14958726,14959604..14959831) /locus_tag="TCM_013607" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023820t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.59 coverage" gene 14936887..14939118 /locus_tag="TCM_013608" /note="dbxref CacaoGD:Thecc1EG013608" mRNA join(14936887..14937066,14938162..14939118) /locus_tag="TCM_013608" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009673t1" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.67 coverage" CDS 14938636..14938845 /locus_tag="TCM_013608" /note="paralog of Thecc1EG009673t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21635.1" /translation="MGEENAISKEELNAEFLVGPVTIAKFPNSVSRLSLNDRILHLIV AYKIRPFGIEHVLVTLEEMWFMYHI" mobile_element complement(14941413..14941515) /note="source:scaffold_2_CACTA_0262 4016 4105" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14942738..14942822 /note="source:CACAO_Mariner_E180_scaffold_6 1521 1602" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(14944942..14945324) /note="source:scaffold_6_CACTA_0711 1901 2278" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14945590..14946166) /note="source:scaffold_6_CACTA_0711 1334 1875" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14946157..14946224 /note="source:CACAO_M_E11415_F328_scaffold_2 22428 22495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14946167..14947471) /note="source:CACAO_M_S_E4591_F5_scaffold_1 19171 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14948702..14948771) /note="source:INTACT93F_F345_scaffold_2-int 16875 16944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14948732..14948798 /note="source:CACAO_M_E14113_F106_scaffold_3 13806 13872" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14948799..14948814 /note="source:CACAO_M_E5899_F5_scaffold_2 20776 20819" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14948872..14949263) /note="source:scaffold_2_CACTA_0262 15519 15908" /mobile_element_type="transposon:TIR/CACTA" CDS 14949437..14949682 /locus_tag="TCM_013607" /note="paralog of Thecc1EG023820t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21634.1" /translation="MFEEKMKEAMARGSHPSKVSGVRDFPPSCGRGATPVSRKECVRI QQAWIKDKIGKSQEVEEDREEDSSMCSDQGDDDPKDT" mobile_element complement(14949479..14950152) /note="source:scaffold_2_CACTA_0262 14655 15339" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14950754..14951488) /note="source:INTACT504_F7_scaffold_1-int 4648 5401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14951209..14951521 /note="source:INTACT697_F302_scaffold_2-int 11762 12076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14951503..14952088 /note="source:scaffold_4_CACTA_0494 1533 2113" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14952179..14952758 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5842 6404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14953251..14954982 /note="source:scaffold_2_CACTA_0262 7679 9424" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14953499..14956265) /note="source:INTACT697_F302_scaffold_2-int 11762 14551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14957339..14958010 /note="source:scaffold_2_CACTA_0262 14661 15343" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14958662..14964754 /note="source:CACAO_M_S_E109876_F7_scaffold_9 1439 7541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14964753..14965451) /note="source:CACAO_M_E22186_F143_scaffold_3 7366 8061" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14966573..14966822) /note="source:CACAO_M_E22186_F143_scaffold_3 6027 6277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14966923..14967420 /note="source:CACAO_M_E43590_F7_scaffold_5 8698 9194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14967803..14967934) /note="source:CACAO_M_E56778_F42_scaffold_8 3732 3860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14967912..14970275 /note="source:CACAO_M_S_E109876_F7_scaffold_9 7534 9929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14970276..14975038 /note="source:CACAO_M_S_E65068_F306_scaffold_5 7045 11784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14972044..14976215) /note="source:INTACT781_F89_scaffold_5-int 1 4173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14976458..14977018 /note="source:scaffold_4_CACTA_0494 1548 2108" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14977210..14979732 /note="source:INTACT697_F302_scaffold_2-int 12302 14844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14978899..14980743) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18701 20386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14980884..14980900 /note="source:scaffold_2_CACTA_0262 5405 5424" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14980901..14983320) /note="source:CACAO_M_E42780_F345_scaffold_5 219 2671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14983319..14984278 /note="source:INTACT170_F12_scaffold_5-int 3451 4385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14984940..14985064 /note="source:INTACT33_F7_scaffold_5-int 10346 10483" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14985972..14986114) /note="source:CACAO_M_E11662_F12_scaffold_2 6610 6752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14986107..14987541 /note="source:CACAO_M_S_E54060_F7_scaffold_5 1512 2999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14987716..14987950) /note="source:CACAO_M_E65323_F12_scaffold_9 7737 10029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14987951..14989990) /note="source:CACAO_Mariner_E180_scaffold_6 6249 8289" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(14990589..14991199) /note="source:scaffold_2_CACTA_0260 3897 4514" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14992361..14993541 /note="source:CACAO_M_E48538_F49_scaffold_6 4679 5820" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14993761..14994171 /note="source:CACAO_M_E48538_F49_scaffold_6 6696 7123" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14994140..14998288) /note="source:CACAO_M_E14113_F106_scaffold_3 16606 20787" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14998273..14999777) /note="source:INTACT95_F143_scaffold_9-int 1466 2978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15003060..15003280 /note="source:CACAO_M_E44868_F328_scaffold_6 1 196" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15003279..15006226 /note="source:CACAO_M_E14702_F33_scaffold_3 1 2948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15006227..15009192 /note="source:CACAO_M_E53114_F328_scaffold_8 192 3178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15008555..15010188) /note="source:CACAO_M_E49857_F85_scaffold_7 19860 21066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15010211..15016101 /note="source:CACAO_M_S_E122077_F328_scaffold_10 4201 10172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15015356..15016274) /note="source:CACAO_M_S_E17060_F3_scaffold_3 3037 3945" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15018354..15021186 /note="source:CACAO_M_E14705_F78_scaffold_3 1 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15023081..15024933 /note="source:CACAO_M_S_E6875_F7_scaffold_2 3541 5395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15025034..15025853 /note="source:INTACT405F_F91_scaffold_4-int 6419 7241" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15025954..15026319 /note="source:CACAO_M_S_E6875_F7_scaffold_2 6297 6663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15026320..15028312) /note="source:CACAO_M_E44086_F33_scaffold_5 1 1994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15028626..15028948 /note="source:CACAO_M_E33422_F33_scaffold_4 1 323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15029049..15029599) /note="source:CACAO_M_E52834_F33_scaffold_8 1 552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15030036..15030879 /note="source:INTACT465_F78_scaffold_6-int 9720 10560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15031235..15032251) /note="source:CACAO_M_E49857_F85_scaffold_7 1117 2134" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15032809..15033333) /note="source:CACAO_M_E49857_F85_scaffold_7 1 524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15033705..15034265 /note="source:CACAO_M_E44425_F33_scaffold_6 7774 8322" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15034366..15034586 /note="source:CACAO_M_E43590_F7_scaffold_5 7165 7386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15034585..15034740) /note="source:INTACT901F_F95_scaffold_6-int 9540 9695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15034847..15035971) /note="source:CACAO_M_E44425_F33_scaffold_6 4657 5661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15037249..15042636 /note="source:INTACT768_F7_scaffold_8-int 1 5364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15042586..15042653) /note="source:CACAO_M_E9677_F7_scaffold_2 4494 4561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15042636..15043206) /note="source:CACAO_M_S_E15593_F7_scaffold_2 1 571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15044914..15045042) /note="source:CACAO_M_S_E15173_F4_scaffold_2 1689 1827" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15045036..15045529) /note="source:scaffold_2_CACTA_0260 6 501" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15045750..15046422) /note="source:CACAO_M_E52278_F17_scaffold_7 12299 12972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15046416..15046778 /note="source:CACAO_M_S_E17060_F3_scaffold_3 3036 3397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15048538..15049581 /note="source:CACAO_Again_on_S_E95_scaffold_3 3784 4763" /mobile_element_type="transposon:TIR/hAT" gene 15048667..15098970 /locus_tag="TCM_013618" /note="dbxref CacaoGD:Thecc1EG013618" mRNA join(15048667..15049145,15053589..15053691, 15054527..15054682,15057093..15057592,15059369..15059464, 15060352..15060467,15060635..15060942,15063519..15064031, 15064681..15064766,15065605..15065759,15072591..15073090, 15078902..15079389,15098766..15098970) /locus_tag="TCM_013618" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036053t1" /note="quality class is weak, express is weak, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" mobile_element complement(15049582..15049827) /note="source:CACAO_M_E53114_F328_scaffold_8 1898 3204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15049629..15050853 /note="source:CACAO_Again_on_S_E95_scaffold_3 4757 6042" /mobile_element_type="transposon:TIR/hAT" mobile_element 15050854..15052268 /note="source:CACAO_M_E50225_F33_scaffold_7 1 1415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15052269..15053356) /note="source:CACAO_M_E44359_F33_scaffold_6 1868 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15053520..15053609) /note="source:INTACT901F_F95_scaffold_6-int 1056 1145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15053602..15055151) /note="source:CACAO_M_E1636_F33_scaffold_1 1 1550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15055051..15055168 /note="source:CACAO_M_E59623_F33_scaffold_9 2778 2894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15055152..15055971 /note="source:CACAO_Again_on_S_E95_scaffold_3 6038 6835" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(15056046..15056764) /note="source:CACAO_M_E53114_F328_scaffold_8 790 1509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15056765..15059382 /note="source:CACAO_M_S_E19949_F198_scaffold_3 1 2618" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(15057420..15057592,15059369..15059464, 15060352..15060467,15060635..15060858) /locus_tag="TCM_013618" /note="paralog of Thecc1EG036053t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21636.1" /translation="MPWPRHLTETTKVVKFLYIRNSSHALALAESHSHTVVHVKCTQI LTSRETLHTALQSRIGFGSMDWDEFVNCEIRDVMGYFDYLILLGFRCTGDIHTMSRRG GSPDTPHSASEGSLDSTARSQWRPDSEYHSESTRKAIARGDIRIRKGVTVVQHFPLDC GRNAALISDEERRRIQQAWIEEQRRKSQEEENPEEDPKKDLE" mobile_element complement(15059388..15060478) /note="source:CACAO_M_E33787_F13_scaffold_4 8823 9889" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15060281..15061365 /note="source:INTACT563_F255_scaffold_10-int 3267 4326" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15061510..15061813 /note="source:INTACT563_F255_scaffold_10-int 4732 5033" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15061787..15062559 /note="source:INTACT563_F255_scaffold_10-int 5158 5929" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15062553..15062867 /note="source:INTACT563_F255_scaffold_10-int 6117 6433" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15063017..15063040 /note="source:INTACT563_F255_scaffold_10-int 16845 16946" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15063041..15063122 /note="source:CACAO_M_E53388_F15_scaffold_8 3105 3186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15066511..15066872 /note="source:CACAO_M_S_E64023_F13_scaffold_5 16487 16847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15067353..15067422 /note="source:CACAO_M_E3248_F5_scaffold_1 3681 3750" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15068149..15068542) /note="source:INTACT126_F14_scaffold_3-int 11162 11552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15068578..15068719 /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15068712..15070197) /note="source:INTACT126_F14_scaffold_3-int 8600 10096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15070197..15070241 /note="source:CACAO_M_E4753_F17_scaffold_2 675 719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15070870..15073371 /note="source:CACAO_M_E14735_F15_scaffold_3 529 3030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15073372..15074200 /note="source:CACAO_M_E11488_F17_scaffold_2 708 1523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15075842..15078459 /note="source:CACAO_M_E11488_F17_scaffold_2 2048 4645" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15078460..15079225) /note="source:CACAO_M_E52278_F17_scaffold_7 8749 9495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15079219..15080096 /note="source:CACAO_M_E12297_F14_scaffold_3 7756 8634" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15079933..15080127) /note="source:INTACT265_F12_scaffold_7-int 6954 7156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15080110..15080247) /note="source:INTACT215F_F14_scaffold_3-int 7499 7636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15081785..15083071 /note="source:CACAO_M_S_E6027_F12_scaffold_2 9782 11067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15083172..15083332) /note="source:INTACT126_F14_scaffold_3-int 6012 6172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15083313..15083970) /note="source:CACAO_M_E52278_F17_scaffold_7 6557 7215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15083971..15084690 /note="source:CACAO_M_E49108_F15_scaffold_6 1 304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15084791..15087714 /note="source:CACAO_M_E11488_F17_scaffold_2 2868 7887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15087934..15088480 /note="source:CACAO_M_E3248_F5_scaffold_1 17258 17794" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15089016..15089070 /note="source:CACAO_M_S_E99574_F14_scaffold_9 20779 20833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15089024..15098000) /note="source:CACAO_M_E52869_F12_scaffold_8 1 8909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15098001..15098046 /note="source:CACAO_M_E4631_F369_scaffold_2 2654 2699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15098744..15098824 /note="source:CACAO_M_E85180_F12_scaffold_10 9651 9720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15098763..15098817) /note="source:CACAO_M_E43428_F369_scaffold_5 1282 1330" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15101217..15105503 /locus_tag="TCM_013621" /note="dbxref CacaoGD:Thecc1EG013621" mRNA join(15101217..15101482,15101558..15101628, 15103787..15103835,15103948..15104065,15104461..15104507, 15104791..15104854,15105031..15105464) /locus_tag="TCM_013621" /product="Ankyrin repeat domain-containing protein 50 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G73350.3" /inference="similar to AA sequence:Phytozome:Sb04g027120.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8410t1" mRNA join(15101272..15101482,15101558..15101628, 15103748..15103835,15103948..15104054,15104772..15104854, 15105031..15105503) /locus_tag="TCM_013621" /product="Ankyrin repeat domain-containing protein 50 isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G73350.3" /inference="similar to AA sequence:Phytozome:GSVIVT01024240001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b013153t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8410t1" mRNA join(15101272..15101482,15101558..15101628, 15103787..15103835,15103948..15104054,15104772..15104854, 15105031..15105503) /locus_tag="TCM_013621" /product="Ankyrin repeat domain-containing protein 50 isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT1G73350.3" /inference="similar to AA sequence:Phytozome:Sb04g027120.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3284t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8410t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc576t5" CDS join(15101434..15101482,15101558..15101628, 15103787..15103835,15103948..15104065,15104461..15104507, 15104791..15104854,15105031..15105283) /locus_tag="TCM_013621" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ankyrin repeat domain-containing protein 50 isoform 1" /protein_id="EOY21637.1" /db_xref="Phytozome:Sb04g027120.1" /db_xref="TAIR:AT1G73350.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MS11" /translation="MAGREVREYTNLSDPKDKKWGKGKDKLDDEDVAFQRMVAKMQEV AGERGGYLHGRGALDSDDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKISFIFATLIC FFHFVATIQHSSPALSPLPLRVEPKPKSGIRQQDLLKKVVEVKPKRPKFSSPSDRSQS NLHPSGSVLANSRESNQENKNKHTILESNKAEKQNKVENPAKSLLGLAYASSDDED" CDS join(15101434..15101482,15101558..15101628, 15103787..15103835,15103948..15104054,15104772..15104854, 15105031..15105283) /locus_tag="TCM_013621" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ankyrin repeat domain-containing protein 50 isoform 3" /protein_id="EOY21639.1" /db_xref="Phytozome:Sb04g027120.1" /db_xref="TAIR:AT1G73350.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MS11" /translation="MAGREVREYTNLSDPKDKKWGKGKDKLDDEDVAFQRMVAKMQEV AGERGGYLHGRGALDSDDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKKAASLADSSP ALSPLPLRVEPKPKSGIRQQDLLKKVVEVKPKRPKFSSPSDRSQSNLHPSGSVLANSR ESNQENKNKHTILESNKAEKQNKVENPAKSLLGLAYASSDDED" CDS join(15103787..15103835,15103948..15104054, 15104772..15104854,15105031..15105283) /locus_tag="TCM_013621" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ankyrin repeat domain-containing protein 50 isoform 2" /protein_id="EOY21638.1" /db_xref="Phytozome:GSVIVT01024240001" /db_xref="TAIR:AT1G73350.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MS11" /translation="MQEVAGERGGYLHGRGALDSDDLLYLKEQMEAEEDAERLLRRTE KRAFAAFKKAASLADSSPALSPLPLRVEPKPKSGIRQQDLLKKVVEVKPKRPKFSSPS DRSQSNLHPSGSVLANSRESNQENKNKHTILESNKAEKQNKVENPAKSLLGLAYASSD DED" gene 15106507..15107493 /locus_tag="TCM_013623" /note="dbxref CacaoGD:Thecc1EG013623" mRNA 15106507..15107493 /locus_tag="TCM_013623" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017644t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 15106919..15107263 /locus_tag="TCM_013623" /note="paralog of Thecc1EG017644t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21640.1" /translation="MKFFVQTKDYDVWSTIIDGPYKPTKKEKEWDRNDINMVQLNVKA MHILLCALRDREYNRVSKCDSAKGIWVKLEELYGEAKKEEEFEEKPYKGQCSTCGKAI RDEESSEIQSSI" mobile_element complement(15109202..15110220) /note="source:CACAO_M_E3248_F5_scaffold_1 3302 4267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15110493..15115205 /note="source:CACAO_M_E5429_F369_scaffold_2 1 4639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15113206..15117046) /note="source:INTACT183F_F349_scaffold_3-int 3076 6919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15117041..15117356 /note="source:CACAO_M_S_E7818_F60_scaffold_2 20687 21003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15119549..15119764) /note="source:CACAO_M_E24592_F195_scaffold_4 11049 11253" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15120719..15124695) /locus_tag="TCM_013625" /note="dbxref CacaoGD:Thecc1EG013625" mRNA complement(join(15120719..15121474,15121562..15121669, 15124682..15124695)) /locus_tag="TCM_013625" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013755t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(15121231..15121474,15121562..15121669, 15124682..15124683)) /locus_tag="TCM_013625" /note="paralog of Thecc1EG013755t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21641.1" /translation="MFRGAPVAHSMSRSDGSPNTPHCTSEGSLDSTARSQCKESLDSS ESLKSKDSSNIQEAIRNFLLQRSEERCKEKAKEAIAKGDIRPRKISVVRHFPPGCGIG TAPVSKEEYIRIQQA" mobile_element 15121557..15121838 /note="source:INTACT597_F267_scaffold_2-int 12687 12967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15121809..15121939 /note="source:INTACT93F_F345_scaffold_2-int 16707 16835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15121835..15124518) /note="source:CACAO_M_E24592_F195_scaffold_4 2 1332" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15125240..15125287) /note="source:CACAO_M_E70891_F369_scaffold_10 16079 16129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15125277..15126906 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5925 7597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15126907..15126940 /note="source:INTACT597_F267_scaffold_2-int 8631 8664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15126948..15127494 /note="source:INTACT47_F12_scaffold_3-int 3757 4290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15127603..15129388 /note="source:CACAO_M_E24018_F98_scaffold_4 1 1789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15129509..15132617 /note="source:CACAO_M_E14758_F15_scaffold_3 1 3109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15132508..15132635) /note="source:INTACT125_F13_scaffold_10-int 8209 8322" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15132620..15132891) /note="source:INTACT595_F266_scaffold_7-int 1150 1318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15133356..15133888 /note="source:INTACT93F_F345_scaffold_2-int 17141 17669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15134166..15134270 /note="source:INTACT47_F12_scaffold_3-int 4793 4899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15134258..15135412 /note="source:INTACT47_F12_scaffold_3-int 4842 5928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15136199..15136721 /note="source:CACAO_M_E43590_F7_scaffold_5 9941 10464" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15138305..15138444) /note="source:CACAO_M_E11662_F12_scaffold_2 6613 6752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15138423..15139906 /note="source:INTACT135F_F90_scaffold_2-int 11142 12643" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15139921..15140019 /note="source:INTACT47_F12_scaffold_3-int 6579 6665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15140139..15140182 /note="source:INTACT47_F12_scaffold_3-int 9751 9796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15140476..15140521) /note="source:INTACT277_F12_scaffold_9-int 1057 1103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15143720..15143780) /note="source:CACAO_M_E13604_F90_scaffold_3 1178 1235" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(15145117..15149942) /locus_tag="TCM_013626" /note="dbxref CacaoGD:Thecc1EG013626" mRNA complement(join(15145117..15145152,15149318..15149455, 15149764..15149942)) /locus_tag="TCM_013626" /product="Uncharacterized protein" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" mobile_element complement(15148315..15148371) /note="source:INTACT296_F13_scaffold_9-int 13177 13233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15148791..15148931 /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(15149342..15149455,15149764..15149865)) /locus_tag="TCM_013626" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21642.1" /translation="MNLQFLDDASPTVVLDDINYLQSILSLKWVERRVPFFGVSRVHH HEVVQRDVNSNHTSEDTLRASSIEVHI" mobile_element 15150945..15151100 /note="source:CACAO_M_E65050_F7_scaffold_9 3576 3731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15151183..15154150 /note="source:CACAO_M_E14761_F33_scaffold_3 1 2933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15154928..15155645) /note="source:INTACT597_F267_scaffold_2-int 9670 10583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15155646..15156584 /note="source:CACAO_M_E69295_F141_scaffold_9 1 946" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15156289..15156645 /note="source:CACAO_M_S_E64023_F13_scaffold_5 13989 14350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15156646..15159750 /note="source:CACAO_M_E14763_F42_scaffold_3 1 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15159754..15161682 /note="source:CACAO_M_S_E64023_F13_scaffold_5 17722 19647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15161677..15162380 /note="source:CACAO_M_E22484_F328_scaffold_3 18470 19228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15163156..15165969 /note="source:CACAO_M_E13604_F90_scaffold_3 2116 7011" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15166987..15167128 /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15167121..15168599) /note="source:CACAO_M_S_E7818_F60_scaffold_2 12363 13843" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15170530..15180440) /locus_tag="TCM_013630" /note="dbxref CacaoGD:Thecc1EG013630" mRNA complement(join(15170530..15171285,15171428..15171475, 15171566..15171683,15180251..15180440)) /locus_tag="TCM_013630" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(15171186..15171285,15171428..15171475, 15171566..15171666)) /locus_tag="TCM_013630" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21643.1" /translation="MFVVAKKSLIGEDLVTCKPSNSLMHDGFKVKEKSFGRILKLHAR SKPSQSMNGKLDIVLSGIMLNVNNGAYKLRNYLVKLDL" mobile_element complement(15173141..15173348) /note="source:INTACT622_F276_scaffold_7-int 4831 5038" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15173349..15175170 /note="source:CACAO_M_E14767_F210_scaffold_3 1 1822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15175171..15178218) /note="source:INTACT622_F276_scaffold_7-int 1693 4835" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15178222..15179889) /note="source:CACAO_M_S_E5234_F276_scaffold_1 1 1780" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15180445..15180550) /note="source:scaffold_1_CACTA_0009 13724 13829" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15180550..15180992) /note="source:CACAO_M_E59650_F290_scaffold_9 4982 5424" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15182416..15183656) /note="source:CACAO_M_E43590_F7_scaffold_5 6592 7823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15183641..15188354) /note="source:scaffold_1_CACTA_0009 8882 13732" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15187852..15189467 /note="source:CACAO_on_E193_scaffold_6 3883 5297" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15188386..15192150) /note="source:scaffold_1_CACTA_0009 5478 9284" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15192152..15194469) /note="source:CACAO_M_E5899_F5_scaffold_2 20478 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15195115..15197193) /note="source:scaffold_1_CACTA_0009 3429 5494" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15197194..15200117 /note="source:CACAO_M_E22380_F279_scaffold_3 1 2923" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15200119..15200793) /note="source:scaffold_1_CACTA_0009 2738 3432" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15200600..15200787 /note="source:CACAO_Mutator_E161_scaffold_1 3972 4150" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15200788..15203754 /note="source:CACAO_M_E14770_F44_scaffold_3 1 2967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15203755..15204336) /note="source:scaffold_1_CACTA_0009 1630 2219" /mobile_element_type="transposon:TIR/CACTA" gene complement(15204515..15216910) /locus_tag="TCM_013635" /note="dbxref CacaoGD:Thecc1EG013635" mRNA complement(join(15204515..15204852,15204956..15205083, 15205169..15205290,15205983..15206061,15206151..15206234, 15206323..15206562,15207432..15207581,15207675..15207981, 15208138..15208499)) /locus_tag="TCM_013635" /product="Steroid 22-alpha-hydroxylase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03520.1" /inference="similar to AA sequence:Phytozome:Glyma16g33560.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1341t3; inference alignment:Newbler:10:TSA:cgbaB_g07027t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8388t1" mRNA complement(join(15204532..15204852,15204956..15205083, 15205169..15205290,15205983..15206061,15206151..15206234, 15206323..15206562,15207432..15207581,15207675..15207999, 15208140..15208742,15216881..15216910)) /locus_tag="TCM_013635" /product="Cytochrome P450 superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03520.1" /inference="similar to AA sequence:Phytozome:Glyma09g28970.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07027t00001" CDS complement(join(15204738..15204852,15204956..15205083, 15205169..15205290,15205983..15206061,15206151..15206234, 15206323..15206562,15207432..15207581,15207675..15207999, 15208140..15208363)) /locus_tag="TCM_013635" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cytochrome P450 superfamily protein isoform 1" /protein_id="EOY21644.1" /db_xref="Phytozome:Glyma09g28970.1" /db_xref="TAIR:AT1G73340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FX29" /translation="MREIYSDAWPLFMITTALAVVFLLANLVLTKKARKRICKLPPGR RGWPLLGDSISWYNAVASSHPPLYVEEQVKRFGKIFSCSLFGKWAVVSADPSFNRFVM LNEGKLFQSSYPKSFRDLVGKNGVITVQGEQQRNLHAIASNMMRLDKLKSHFLEDIQK VVLQTLSHIQDNRTILLQDVCRKLAINLMVNQLLGVSSEAQINEMAQLFSDFVDGCLS VPINWPGFAYHTAMKAREKIISEIFITIEKRKQEGASEVGNGVLGRLLIEENLADDAV ADFIINLLFAGNETTAKTMLFAVYFLTQCPRALTQLRDEQNSVRPNSGEEMLTWQDYK AMSFTQCVIDETLRLGGIAIWLMREAKQDITYQDFVIPKGCFVVPFLSAVHLDENLYK GALSFDPWRWMDPKNEEKRNWRSSPFYSPFGGGARFCPGAELARLQIALFLHHFVNSY RWIQLKQDRMSFFPSARLVNGFQIRPIKRHKSKQKEKG" CDS complement(join(15204738..15204852,15204956..15205083, 15205169..15205290,15205983..15206061,15206151..15206234, 15206323..15206562,15207432..15207581,15207675..15207920)) /locus_tag="TCM_013635" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Steroid 22-alpha-hydroxylase, putative isoform 2" /protein_id="EOY21645.1" /db_xref="Phytozome:Glyma16g33560.1" /db_xref="TAIR:AT1G73340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FX29" /translation="MLNEGKLFQSSYPKSFRDLVGKNGVITVQGEQQRNLHAIASNMM RLDKLKSHFLEDIQKVVLQTLSHIQDNRTILLQDVCRKLAINLMVNQLLGVSSEAQIN EMAQLFSDFVDGCLSVPINWPGFAYHTAMKAREKIISEIFITIEKRKQEGASEVGNGV LGRLLIEENLADDAVADFIINLLFAGNETTAKTMLFAVYFLTQCPRALTQLRDEQNSV RPNSGEEMLTWQDYKAMSFTQCVIDETLRLGGIAIWLMREAKQDITYQDFVIPKGCFV VPFLSAVHLDENLYKGALSFDPWRWMDPKNEEKRNWRSSPFYSPFGGGARFCPGAELA RLQIALFLHHFVNSYRWIQLKQDRMSFFPSARLVNGFQIRPIKRHKSKQKEKG" mobile_element complement(15210799..15211905) /note="source:CACAO_M_S_E7390_F7_scaffold_2 1526 2633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15211905..15213333 /note="source:CACAO_M_E69800_F12_scaffold_9 1220 2662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15213330..15213514) /note="source:CACAO_M_S_E4500_F7_scaffold_1 1351 1537" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15216828..15217445) /note="source:scaffold_2_CACTA_0260 3898 4514" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15218357..15219130) /note="source:CACAO_M_E12236_F44_scaffold_3 2185 2946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15219107..15220264) /note="source:CACAO_M_E44709_F9_scaffold_6 9294 10435" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15220269..15220397) /note="source:CACAO_M_S_E4591_F5_scaffold_1 5815 5944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15220398..15220427 /note="source:INTACT135F_F90_scaffold_2-int 8616 8770" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15221554..15221633) /note="source:INTACT33_F7_scaffold_5-int 11986 12065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15222174..15222514) /note="source:INTACT33_F7_scaffold_5-int 11337 11661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15224623..15226956) /note="source:CACAO_M_E86368_F51_scaffold_15 768 3113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15227057..15227805 /note="source:CACAO_M_E24140_F51_scaffold_4 2306 3053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15228750..15229077 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18570 18839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15230809..15231202 /note="source:CACAO_M_E13038_F22_scaffold_3 13740 14133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15231301..15232129 /note="source:scaffold_4_CACTA_0493 4278 5128" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15232131..15232449 /note="source:scaffold_4_CACTA_0493 1267 1582" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15237426..15237460) /note="source:scaffold_4_CACTA_0493 9284 9448" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15237461..15237591 /note="source:CACAO_M_S_E32752_F12_scaffold_4 10501 10631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15237587..15237746 /note="source:CACAO_M_E14060_F15_scaffold_3 2293 2452" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15238955..15247073) /note="source:CACAO_M_E57269_F15_scaffold_8 1 8115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15246964..15247098 /note="source:CACAO_M_E44425_F33_scaffold_6 9731 9870" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15247888..15250524) /note="source:CACAO_M_S_E14649_F328_scaffold_2 10371 13007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15250525..15257090) /note="source:CACAO_M_E57859_F86_scaffold_9 2567 9161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15257091..15259111 /note="source:CACAO_M_E33870_F15_scaffold_4 1 2021" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15259472..15260191) /note="source:CACAO_M_E53088_F15_scaffold_8 1 719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15260192..15261918) /note="source:CACAO_M_E34124_F86_scaffold_4 853 2587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15262022..15262821 /note="source:CACAO_M_E49857_F85_scaffold_7 6158 6957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15262822..15263392) /note="source:CACAO_M_S_E122077_F328_scaffold_10 6970 7533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15264674..15265753 /note="source:scaffold_8_CACTA_0859 16513 17578" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15267411..15267452) /note="source:CACAO_M_E135_F15_scaffold_1 2820 2894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15267453..15270208 /note="source:CACAO_M_E14790_F15_scaffold_3 1 2756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15273359..15274925) /note="source:CACAO_M_E52877_F7_scaffold_8 3162 4716" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15275784..15275954 /note="source:CACAO_M_E13038_F22_scaffold_3 11308 11484" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15277867..15279582 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3033 4755" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15279771..15281740) /locus_tag="TCM_013641" /note="dbxref CacaoGD:Thecc1EG013641" mRNA complement(join(15279771..15280201,15280302..15280432, 15281300..15281397,15281498..15281740)) /locus_tag="TCM_013641" /product="Topoisomerase 6 subunit B-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040492t2" /inference="similar to AA sequence:Phytozome:Sb02g018660.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(15279874..15280201,15280302..15280432, 15281300..15281397,15281498..15281570)) /locus_tag="TCM_013641" /note="paralog of Thecc1EG040492t2" /codon_start=1 /product="Topoisomerase 6 subunit B-like protein" /protein_id="EOY21646.1" /db_xref="Phytozome:Sb02g018660.1" /db_xref="TAIR:AT3G20780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KZW4" /translation="MWIDVLIVNIVAHILFPYLRKTKKVSKKKEKCLISEQEKFFAYK IAYLEESLKKNKQLVLLIKKMSFCLYFQSKILHYMRHMVVITIYAQFLFKFVSNALDK NVTTKFAWRTDVIPLVPVATKHHLSSIDILLIKCLIAETLKQNLIEFFQHEFVNIEKS HAERLIGKKFVNISWKLFSLFLFLLEFFLLPHFHYSIKNIMVEFLISSC" gene 15283925..15284271 /locus_tag="TCM_013642" /note="dbxref CacaoGD:Thecc1EG013642" mRNA 15283925..15284271 /locus_tag="TCM_013642" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038865t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 15283963..15284208 /locus_tag="TCM_013642" /note="paralog of Thecc1EG038865t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21647.1" /translation="MASKRSRVESGKGVATEEEDILDNVATYLVKLMDQIENMEKDIR GLMDKLLVRTEVLETEILGNNKILAKIYEIADEIRKK" mobile_element 15285363..15285734 /note="source:scaffold_4_CACTA_0493 3889 4340" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15285852..15285941) /note="source:CACAO_M_S_E85067_F86_scaffold_7 3999 4086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15286858..15288920 /note="source:CACAO_M_E52239_F256_scaffold_7 19813 21898" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15286921..15296201) /note="source:CACAO_M_E34534_F369_scaffold_5 16 10418" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15297087..15305067 /note="source:CACAO_M_S_E99035_F335_scaffold_9 1 8001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15298941..15307043 /note="source:scaffold_2_CACTA_0259 1 8094" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15307037..15307187) /note="source:CACAO_M_E24592_F195_scaffold_4 1455 1589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15307076..15307218 /note="source:CACAO_M_E24592_F195_scaffold_4 18636 18774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15307911..15308316) /note="source:INTACT453_F4_scaffold_9-int 7236 7649" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15308256..15308363 /note="source:INTACT410F_F357_scaffold_4-int 9952 10071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15308323..15309112) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6808 7597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15309107..15309470) /note="source:CACAO_M_S_E4534_F4_scaffold_1 3920 4301" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15309483..15310892) /note="source:scaffold_5_CACTA_0591 5787 7190" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15310310..15310957) /note="source:CACAO_M_E58324_F9_scaffold_9 8837 9453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15310957..15312304 /note="source:INTACT296_F13_scaffold_9-int 11777 13157" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15311796..15312361) /note="source:CACAO_M_E22484_F328_scaffold_3 12765 13288" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15312335..15313643 /note="source:CACAO_M_S_E19828_F19_scaffold_3 10242 11399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15312526..15313645) /note="source:CACAO_M_E58324_F9_scaffold_9 21666 22792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15313750..15314032 /note="source:INTACT93F_F345_scaffold_2-int 16869 17150" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15313780..15314716) /note="source:scaffold_5_CACTA_0591 4823 5759" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15313838..15314942) /note="source:CACAO_M_E58324_F9_scaffold_9 7667 8808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15314929..15314969) /note="source:INTACT498_F231_scaffold_5-int 9066 9106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15314940..15316554 /note="source:CACAO_M_E5326_F22_scaffold_2 21172 22603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15316653..15317391) /note="source:scaffold_8_CACTA_0867 13793 14524" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15316815..15320236) /note="source:CACAO_Mutator_E592_scaffold_3 13219 16684" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15320955..15323483) /note="source:scaffold_8_CACTA_0867 5175 7801" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15323466..15323569) /note="source:CACAO_M_E5800_F12_scaffold_2 17011 17114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15323705..15326102 /note="source:CACAO_M_E58324_F9_scaffold_9 7835 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15326102..15326245) /note="source:scaffold_8_CACTA_0867 5037 5180" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15326246..15327668 /note="source:CACAO_M_E14809_F9_scaffold_3 1 1423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15327669..15329059) /note="source:scaffold_8_CACTA_0867 3628 5041" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15329068..15329319) /note="source:CACAO_M_E26947_F144_scaffold_4 2344 2595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15329316..15330051) /note="source:CACAO_M_E42395_F3_scaffold_5 6666 7388" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15330048..15331888 /note="source:CACAO_M_E22484_F328_scaffold_3 12454 14255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15331207..15332629 /note="source:scaffold_5_CACTA_0591 4168 5573" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15331887..15334245) /note="source:CACAO_M_E42780_F345_scaffold_5 1 2425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15334256..15337304) /note="source:scaffold_8_CACTA_0867 422 3638" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15338589..15339422 /note="source:CACAO_M_E14814_F15_scaffold_3 1 834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15344735..15344847) /note="source:CACAO_PIF_E119_scaffold_3 2591 2689" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(15344775..15344859) /note="source:INTACT753_F322_scaffold_5-int 8035 8102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15344860..15346710 /note="source:CACAO_M_S_E20040_F4_scaffold_3 1 1851" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15346979..15349669 /note="source:CACAO_M_S_E20041_F369_scaffold_3 1 2691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15351386..15354499 /note="source:CACAO_M_S_E20043_F51_scaffold_3 1 3114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15354508..15354585) /note="source:CACAO_M_E5899_F5_scaffold_2 21632 21713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15355891..15355909) /note="source:scaffold_9_CACTA_0934 6693 6713" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15355910..15358804 /note="source:CACAO_M_E14820_F247_scaffold_3 1 2895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15359768..15360250) /note="source:CACAO_M_S_E65068_F306_scaffold_5 5622 6124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15360263..15362813 /note="source:CACAO_M_S_E259836_F369_scaffold_19 3 2618" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15362995..15370599) /note="source:INTACT85_F9_scaffold_4-int 7328 15000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15372094..15372592 /note="source:CACAO_M_E23991_F4_scaffold_4 13946 14386" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15372570..15372648 /note="source:CACAO_M_E23991_F4_scaffold_4 3213 3302" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15372826..15373881 /note="source:CACAO_M_E23991_F4_scaffold_4 14451 15492" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15374024..15374182 /note="source:CACAO_M_E23991_F4_scaffold_4 4622 4782" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15381308..15382243) /note="source:scaffold_1_CACTA_0009 12909 13829" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15382078..15387306 /note="source:CACAO_on_E193_scaffold_6 1 5297" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15386125..15388066) /note="source:CACAO_on_S_E176_scaffold_5 2478 4427" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15387301..15388242 /note="source:CACAO_on_E193_scaffold_6 8384 9336" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15388230..15388626) /note="source:CACAO_on_S_E176_scaffold_5 1771 2167" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15388650..15390001 /note="source:INTACT1373F_F385_scaffold_8-int 15271 16692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15390775..15392122 /note="source:CACAO_on_E193_scaffold_6 10067 11412" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15392123..15395229 /note="source:CACAO_M_E14825_F51_scaffold_3 1 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15395230..15395719 /note="source:CACAO_on_E193_scaffold_6 11408 11902" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15395692..15396041) /note="source:CACAO_Mutator_E1149_scaffold_5 1 354" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15396577..15397527 /note="source:CACAO_M_E33977_F20_scaffold_4 15618 16549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15397677..15399314 /note="source:CACAO_M_E84368_F4_scaffold_10 4505 6140" /mobile_element_type="retrotransposon:LTR/Copia" gene 15399393..15400861 /locus_tag="TCM_013656" /note="dbxref CacaoGD:Thecc1EG013656" mRNA join(15399393..15399571,15400417..15400509, 15400604..15400861) /locus_tag="TCM_013656" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(15400422..15400509,15400604..15400809) /locus_tag="TCM_013656" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21648.1" /translation="MLLVKHISDVPKDSAVLLYAIVSGKSINIVGVQWDSNEELLSPK VPLDAGIISRFYAHEYSVTRGSSSSAPPPPPQPTQPQNLTLPQRMECLKLQST" mobile_element 15401959..15402862 /note="source:INTACT85_F9_scaffold_4-int 590 1485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15408914..15409326) /note="source:CACAO_M_S_E15173_F4_scaffold_2 1419 1864" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15409326..15409847 /note="source:INTACT570_F260_scaffold_5-int 8575 9110" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15409826..15409967) /note="source:CACAO_M_E23144_F272_scaffold_4 11335 11472" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15409847..15411451) /note="source:CACAO_M_S_E119615_F3_scaffold_9 5557 7153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15411554..15412242) /note="source:CACAO_M_S_E119615_F3_scaffold_9 4427 5116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15412241..15414948 /note="source:INTACT570_F260_scaffold_5-int 9106 11804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15414944..15415627) /note="source:CACAO_M_S_E15173_F4_scaffold_2 12536 13237" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15416803..15418154 /note="source:CACAO_M_E34540_F17_scaffold_5 1 1385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15418155..15421114 /note="source:CACAO_M_S_E20068_F245_scaffold_3 1 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15419812..15426679 /locus_tag="TCM_013659" /note="dbxref CacaoGD:Thecc1EG013659" mRNA join(15419812..15420014,15426432..15426679) /locus_tag="TCM_013659" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039009t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc10596t1_G4" mobile_element 15421117..15422584 /note="source:CACAO_M_E34540_F17_scaffold_5 1383 2846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15422585..15423911) /note="source:CACAO_M_S_E15173_F4_scaffold_2 541 1864" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15423912..15433774 /note="source:CACAO_M_E14837_F12_scaffold_3 1 9863" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 15426450..15426653 /locus_tag="TCM_013659" /note="paralog of Thecc1EG039009t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21649.1" /translation="MNLQKEMHTTIKIKLKHYLNVIIMVNMVIYHMTVLRKEKCRKLR KSGFLRDPLLQLALKDPSKYGYL" mobile_element complement(15433776..15434316) /note="source:CACAO_M_S_E15173_F4_scaffold_2 12549 13084" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15434316..15438652 /note="source:CACAO_M_E34540_F17_scaffold_5 2841 7162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15438939..15441927 /note="source:CACAO_M_E14839_F7_scaffold_3 1 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15442300..15442527 /note="source:CACAO_M_E3326_F17_scaffold_1 13252 13481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15442503..15442601 /note="source:CACAO_M_E453_F12_scaffold_1 10785 10885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15442527..15443792) /note="source:CACAO_M_E3248_F5_scaffold_1 17588 18837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15443474..15443849 /note="source:CACAO_M_S_E31635_F14_scaffold_3 2674 3033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15443855..15459644 /note="source:INTACT180_F13_scaffold_3-int 1 15790" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15459674..15465967) /locus_tag="TCM_013663" /note="dbxref CacaoGD:Thecc1EG013663" mRNA complement(join(15459674..15459705,15462573..15463601, 15465899..15465967)) /locus_tag="TCM_013663" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003816t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" mobile_element 15459719..15460923 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3261 4455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15460924..15462307 /note="source:CACAO_M_E34540_F17_scaffold_5 132 1558" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(15462679..15463002) /locus_tag="TCM_013663" /note="paralog of Thecc1EG003816t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21650.1" /translation="MMETWSDSDDSQDEENEEDANLCLLALNDYKVYPSPHDIDSYAH NENDYSFDELQDAYDDLMFEFEEKTLKYKGIISNLKVENEKLVKTKIELENMMNGMQN GIELL" mobile_element 15464257..15464341 /note="source:scaffold_8_CACTA_0859 658 744" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15464824..15465985) /note="source:INTACT280_F60_scaffold_5-int 1 1201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15465987..15469185 /note="source:CACAO_M_E52239_F256_scaffold_7 19797 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15466002..15472655 /locus_tag="TCM_013664" /note="dbxref CacaoGD:Thecc1EG013664" mRNA join(15466002..15466005,15471959..15472124, 15472217..15472655) /locus_tag="TCM_013664" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element 15469186..15469466 /note="source:INTACT280_F60_scaffold_5-int 18669 18962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15469490..15469580 /note="source:INTACT280_F60_scaffold_5-int 18874 18963" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(15472035..15472124,15472217..15472375) /locus_tag="TCM_013664" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21651.1" /translation="MFVASKDGGFALLVIFICCAMMMYDAYKVVTLSFALAMRCDMML LFAAAMRHDMILYVVCRLATVRDYVMSREDHSMICIMV" mobile_element complement(15477577..15478306) /note="source:CACAO_M_E1841_F5_scaffold_1 3101 3828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15478787..15478898 /note="source:CACAO_M_E1841_F5_scaffold_1 27346 27455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15479100..15479164) /note="source:INTACT30F_F12_scaffold_1-int 777 841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15479646..15482604 /note="source:CACAO_M_E14853_F143_scaffold_3 1 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15485286..15486433) /note="source:scaffold_5_CACTA_0591 15450 16631" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15486408..15486743) /note="source:scaffold_5_CACTA_0591 9754 10080" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15486806..15487030) /note="source:scaffold_5_CACTA_0591 9532 9756" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15491549..15491589 /note="source:CACAO_M_E1841_F5_scaffold_1 25763 25802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15491599..15491646 /note="source:CACAO_M_E1841_F5_scaffold_1 23005 23051" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15494223..15495746 /note="source:CACAO_M_E52278_F17_scaffold_7 1 1538" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15495791..15498747 /note="source:CACAO_M_E14859_F33_scaffold_3 1 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15499555..15499831) /note="source:scaffold_8_CACTA_0859 17657 17937" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15499915..15500871) /note="source:scaffold_8_CACTA_0859 16559 17654" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15501532..15504420 /note="source:CACAO_M_E14860_F15_scaffold_3 1 2862" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15504890..15559224 /locus_tag="TCM_013665" /note="dbxref CacaoGD:Thecc1EG013665" mRNA join(15504890..15504968,15506499..15506611, 15519903..15520307,15520393..15520446,15521272..15521421, 15534026..15534188,15539222..15539313,15540658..15540761, 15543684..15543959,15550921..15551034,15554649..15554823, 15558444..15559224) /locus_tag="TCM_013665" /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g33510.2" /inference="similar to AA sequence:Phytozome:Glyma05g33510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06515t00001" mobile_element complement(15505902..15505952) /note="source:scaffold_8_CACTA_0859 16513 16563" /mobile_element_type="transposon:TIR/CACTA" gene 15513361..15514851 /locus_tag="TCM_013666" /note="dbxref CacaoGD:Thecc1EG013666" mRNA 15513361..15514851 /locus_tag="TCM_013666" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019167t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is noncode_complete; similar to RNA sequence, EST 0.22 coverage" CDS 15513879..15514103 /locus_tag="TCM_013666" /note="paralog of Thecc1EG019167t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21654.1" /translation="MKVHLMFHVRNLKPFHVDLVNASKRRATRAAISTKPLSQRKVEE ILAERMTIIKRQLTQECLVRWEGLRPDKIT" mobile_element 15516135..15519140 /note="source:CACAO_M_S_E20099_F15_scaffold_3 1 3703" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(15519926..15520307,15520393..15520446, 15521272..15521421,15534026..15534188,15539222..15539313, 15540658..15540761,15543684..15543959,15550921..15551213) /locus_tag="TCM_013665" /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g33510.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s05490.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00771t00001; inference alignment:Newbler:10:TSA:cgbaP2_g06515t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1316t18" CDS join(15519987..15520307,15520393..15520446, 15521272..15521421,15534026..15534188,15539222..15539313, 15540658..15540761,15543684..15543959,15550921..15551034, 15554649..15554823,15558444..15558491) /locus_tag="TCM_013665" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 1" /protein_id="EOY21652.1" /db_xref="Phytozome:Glyma05g33510.1" /db_xref="TAIR:AT1G17850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I933" /translation="MRGWCAVSSSGSLSLNFGLYPSPKAANGACGCCFHHGFPRKVVG IKSNNNTRKVHRAISISCCASASNSNDKVCQAEIENFVVVNFYRFVFIKDPQHEVAKH LTFLKGLNIHGRIYINEQGINAQYSGPSEETFAYVKWLKEDEKFSDILVQTSPALNGH TFPKLKLRYKPSLVQFEGGVSHLPLLDPSMRATPLAPSEWRERLEAVDNNDKASNSNP STDYILLDVRNGYEWDIGHFQGAQRPDVDCFRGTSFGLSPIEGVASDLLSNVDKQKTN IMMYCTGGIRCDVYSTILRQQGFQNLYTVEGGVSHYLKTEGPVKWVGNLFTFDSRLSL PPSTYNEETLIEASMTQQALENDKFAKCYVCGSQVSELRHRNCANLDCNLLFLCCANC LMDLRGCCCYNCTTAPRRRPVLPGFQRYKKWHIVCARCGGMHMPVMVMMIVPVCTMWG DGTDCARCGEMHTMTPAMCMMWGDAHELDVMIVVFDERRILMEEGEQF" CDS join(15519987..15520307,15520393..15520446, 15521272..15521421,15534026..15534188,15539222..15539313, 15540658..15540761,15543684..15543959,15550921..15551056) /locus_tag="TCM_013665" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 2" /protein_id="EOY21653.1" /db_xref="Phytozome:POPTR_0015s05490.1" /db_xref="TAIR:AT1G17850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I933" /translation="MRGWCAVSSSGSLSLNFGLYPSPKAANGACGCCFHHGFPRKVVG IKSNNNTRKVHRAISISCCASASNSNDKVCQAEIENFVVVNFYRFVFIKDPQHEVAKH LTFLKGLNIHGRIYINEQGINAQYSGPSEETFAYVKWLKEDEKFSDILVQTSPALNGH TFPKLKLRYKPSLVQFEGGVSHLPLLDPSMRATPLAPSEWRERLEAVDNNDKASNSNP STDYILLDVRNGYEWDIGHFQGAQRPDVDCFRGTSFGLSPIEGVASDLLSNVDKQKTN IMMYCTGGIRCDVYSTILRQQGFQNLYTVEGGVSHYLKTEGPVKWVGNLFTFDSRLSL PPSTYNEETLIEASMTQQALENDKFAKCYVCGSQVSELRHRNCANLDCNLLFLCCANC LMDLRGCCCYNCTTAPRRRPVLPGFQRYKKWHMYRDLEV" gene 15524095..15524998 /locus_tag="TCM_013668" /note="dbxref CacaoGD:Thecc1EG013668" mRNA 15524095..15524998 /locus_tag="TCM_013668" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0068s00225.1" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2254t4" CDS 15524160..15524384 /locus_tag="TCM_013668" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21655.1" /translation="MYGMKCAIIEEPFSHKKDGIVLFIRSREFQDNCVCLVTNKAHGA KQDIEVSILFLNFSLLTCIIMKDHSSYSTL" mobile_element 15527013..15527307 /note="source:INTACT278_F40_scaffold_5-int 3 275" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15527295..15527931) /note="source:CACAO_M_E42514_F40_scaffold_5 21035 21699" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15527932..15531360 /note="source:CACAO_M_S_E66869_F40_scaffold_6 1424 4866" /mobile_element_type="retrotransposon:LTR/Copia" gene 15540690..15541933 /locus_tag="TCM_013669" /note="dbxref CacaoGD:Thecc1EG013669" mRNA join(15540690..15540761,15541052..15541933) /locus_tag="TCM_013669" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5562t1" CDS 15541542..15541874 /locus_tag="TCM_013669" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21656.1" /translation="MVHKLLFVVTQNLISTTLLFETLVELYPEAPFYHFLPLFYFDEL HQYYASKITMAFVMLRPTLSPFLCIPKHHLLDKEGLNNIIFYLFAIFGCLVYVFIVPE VCPCQTRT" mobile_element complement(15552549..15553201) /note="source:INTACT453_F4_scaffold_9-int 1140 1863" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15553196..15553366 /note="source:CACAO_M_S_E66461_F76_scaffold_5 2839 3009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15553424..15554579 /note="source:CACAO_M_S_E64023_F13_scaffold_5 3039 4238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15555146..15557636 /note="source:CACAO_M_E49050_F85_scaffold_6 844 3336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15557637..15558212 /note="source:scaffold_4_CACTA_0494 3222 3775" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15558234..15559760 /note="source:CACAO_M_S_E20104_F17_scaffold_3 1 1527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15559761..15560025 /note="source:scaffold_4_CACTA_0494 3773 4037" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15560019..15561102) /note="source:INTACT453_F4_scaffold_9-int 16632 17746" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15561104..15563240) /note="source:CACAO_M_S_E97714_F207_scaffold_8 1174 3338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15563227..15563809) /note="source:CACAO_M_S_E64023_F13_scaffold_5 19077 19647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15563810..15564851 /note="source:CACAO_M_E3124_F323_scaffold_1 1 1036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15565132..15565494) /note="source:CACAO_M_E52472_F323_scaffold_7 1763 2124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15565595..15567234 /note="source:CACAO_M_E57924_F323_scaffold_9 1542 3180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15567369..15567915 /note="source:CACAO_M_E49143_F273_scaffold_6 758 1304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15567912..15568544) /note="source:scaffold_4_CACTA_0498 10709 11340" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15568649..15568981) /note="source:scaffold_4_CACTA_0498 10334 10666" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15574344..15574791) /note="source:scaffold_4_CACTA_0498 9185 9633" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15577300..15578475) /note="source:CACAO_M_E12556_F207_scaffold_3 1 1179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15579032..15579775 /note="source:CACAO_M_E618_F42_scaffold_1 1 745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15579876..15582219) /note="source:CACAO_M_E363_F42_scaffold_1 1 2347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15586277..15586467 /note="source:CACAO_M_E69734_F323_scaffold_9 1 191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15590949..15591387 /note="source:CACAO_M_S_E87920_F323_scaffold_7 859 1298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15591621..15592029 /note="source:CACAO_M_E56825_F323_scaffold_8 1967 2376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15592130..15595199 /note="source:CACAO_M_S_E121311_F85_scaffold_10 2306 5370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15595477..15596475 /note="source:INTACT759_F323_scaffold_6-int 5917 6915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15596463..15596523) /note="source:CACAO_M_E56778_F42_scaffold_8 2991 3044" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15596624..15598407) /note="source:CACAO_M_E14787_F15_scaffold_3 1 1782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15598664..15599453 /note="source:CACAO_M_E4554_F15_scaffold_2 2962 3751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15599554..15599841 /note="source:INTACT139F_F15_scaffold_2-int 3684 3971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15606069..15606214 /note="source:CACAO_M_E22722_F42_scaffold_3 3671 3816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15606213..15609749 /note="source:INTACT759_F323_scaffold_6-int 7071 10614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15609750..15610841 /note="source:CACAO_M_E22722_F42_scaffold_3 3907 5002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15609750..15609777) /note="source:CACAO_on_E565_scaffold_5 3031 3057" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 15614241..15614537 /note="source:CACAO_M_S_E2040_F42_scaffold_1 1189 1485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15615681..15616141 /note="source:CACAO_M_E71354_F42_scaffold_10 2639 3115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15617106..15617634) /note="source:CACAO_M_E84995_F60_scaffold_10 6305 6841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15620408..15620578 /note="source:CACAO_M_E2953_F85_scaffold_1 3208 3349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15620508..15620592 /note="source:scaffold_4_CACTA_0498 7902 7979" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15620583..15620824) /note="source:CACAO_M_E84995_F60_scaffold_10 6057 6305" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15620825..15623258) /note="source:CACAO_M_E11662_F12_scaffold_2 6202 8500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15623259..15624062) /note="source:CACAO_M_E52071_F15_scaffold_7 2293 3095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15637175..15638334) /note="source:INTACT584_F15_scaffold_3-int 1145 2305" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15638872..15639479) /note="source:CACAO_M_S_E52673_F15_scaffold_5 1 609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15639481..15639518 /note="source:INTACT39F_F22_scaffold_1-int 6007 6048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15639504..15645195 /note="source:INTACT93_F15_scaffold_3-int 3389 9105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15647069..15647830 /note="source:scaffold_4_CACTA_0498 9960 10720" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15648520..15649148 /note="source:scaffold_4_CACTA_0498 7992 8620" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15667400..15667906 /note="source:CACAO_M_E69460_F12_scaffold_9 6651 7159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15667906..15668638) /note="source:CACAO_M_E52985_F33_scaffold_8 1139 1872" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15669395..15669756) /note="source:CACAO_M_E10224_F33_scaffold_2 1 348" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15671277..15672707 /note="source:INTACT39F_F22_scaffold_1-int 6007 7437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15672707..15672931 /note="source:CACAO_M_E43672_F60_scaffold_5 16794 17025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15672980..15674662 /note="source:CACAO_M_E11662_F12_scaffold_2 4776 6462" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15676318..15676833) /note="source:CACAO_M_E1635_F42_scaffold_1 1 537" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15677598..15678376 /note="source:CACAO_M_E42299_F33_scaffold_5 1 779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15678348..15678698 /note="source:CACAO_M_E4753_F17_scaffold_2 11004 11325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15678799..15681009 /note="source:CACAO_M_E11662_F12_scaffold_2 6467 8500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15681011..15681209 /note="source:CACAO_M_E43672_F60_scaffold_5 17051 17235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15681210..15681679 /note="source:CACAO_M_E52427_F42_scaffold_7 1 470" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15684314..15684351 /note="source:CACAO_M_E3109_F15_scaffold_1 2627 2664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15684347..15684659) /note="source:CACAO_M_E4200_F33_scaffold_2 1851 2163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15684760..15693110) /note="source:INTACT218_F33_scaffold_9-int 1461 9842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15693099..15693161 /note="source:CACAO_M_E57059_F42_scaffold_8 6654 6716" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15693799..15696026) /note="source:CACAO_M_E11662_F12_scaffold_2 8789 11032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15695994..15697504) /note="source:CACAO_M_E4238_F33_scaffold_2 8029 9540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15697496..15698923) /note="source:INTACT453_F4_scaffold_9-int 1411 2866" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15698921..15701871 /note="source:CACAO_M_E43672_F60_scaffold_5 10453 13401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15701872..15703289) /note="source:INTACT453_F4_scaffold_9-int 16946 18364" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15705399..15706340) /note="source:INTACT209_F33_scaffold_5-int 2019 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15705796..15803809 /locus_tag="TCM_013681" /note="dbxref CacaoGD:Thecc1EG013681" mRNA join(15705796..15706164,15706542..15706993, 15795598..15796089,15796401..15797210,15797310..15797457, 15797572..15797673,15797830..15799055,15799317..15799440, 15799678..15800075,15800168..15800740,15802726..15802849, 15803564..15803809) /locus_tag="TCM_013681" /product="DNA/RNA polymerases superfamily protein" /inference="alignment:exonerate- protein:2:frave:gene14842.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035850t1" /note="quality class is strong-expresste, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.32 coverage" mobile_element complement(15709472..15709530) /note="source:CACAO_M_E11662_F12_scaffold_2 6586 6644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15709540..15712851 /note="source:CACAO_M_E14920_F82_scaffold_3 1 6595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15714008..15714101 /note="source:scaffold_9_CACTA_0931 15067 15160" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15714102..15724975 /note="source:INTACT560_F15_scaffold_3-int 1 10855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15724976..15731420 /note="source:CACAO_M_E43348_F5_scaffold_5 9160 16109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15734341..15735645 /note="source:CACAO_M_E69228_F89_scaffold_9 1679 2986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15735647..15736125 /note="source:CACAO_M_E86052_F15_scaffold_12 4119 4593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15736226..15736619) /note="source:CACAO_M_E59641_F12_scaffold_9 1769 2138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15736273..15737321 /note="source:CACAO_M_E43348_F5_scaffold_5 16929 17922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15737322..15739983 /note="source:CACAO_M_E14931_F345_scaffold_3 1 2662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15739984..15740915) /note="source:CACAO_M_S_E7632_F12_scaffold_2 3779 4703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15740916..15741694 /note="source:CACAO_M_S_E145445_F22_scaffold_10 8883 9660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15741795..15742217) /note="source:CACAO_M_E58728_F12_scaffold_9 4260 4683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15742215..15742622 /note="source:CACAO_M_E53452_F33_scaffold_8 7963 8370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15749922..15751329) /note="source:CACAO_M_E85180_F12_scaffold_10 8392 9803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15751329..15754704 /note="source:CACAO_M_E73087_F12_scaffold_10 12114 14071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15754701..15757639) /note="source:CACAO_M_S_E85308_F72_scaffold_7 1 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15757640..15766172 /note="source:INTACT363_F7_scaffold_9-int 1411 9921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15766173..15768008) /note="source:CACAO_M_E33787_F13_scaffold_4 1 1785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15768009..15768038 /note="source:INTACT236_F12_scaffold_10-int 1829 1852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15768016..15768526 /note="source:scaffold_4_CACTA_0494 106 607" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15770253..15770846) /note="source:scaffold_4_CACTA_0494 1 591" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15772059..15788197 /note="source:INTACT126_F14_scaffold_3-int 1 16139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15788198..15788371) /note="source:CACAO_M_E65323_F12_scaffold_9 8868 9040" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15791244..15792961 /note="source:CACAO_M_E44425_F33_scaffold_6 23151 24869" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(15795994..15796089,15796401..15797210, 15797310..15797457,15797572..15797673,15797830..15799055, 15799317..15799440,15799678..15800075,15800168..15800740, 15802726..15802815) /locus_tag="TCM_013681" /note="paralog of Thecc1EG035850t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY21657.1" /translation="MTKLPLLDEKLIFYLFKVGNSLKSFRTRYLTMITMPPRRGRQPL ARSVRRGKGRSQRRQLDAVGEESAASTIRAAPTAEQADSLPHPPSPQPPMGIPAMPTE EAQALAAFFAAMAGQAQTGQVPPVVPPTTPLVPPPVQDVSISKKLKEARQLGCVSFTG ELDATVAKDWINQVSETLSDMGLDDDMKLMVAMRLLEKRARTWWNSVKSRSATPQTWY DFLREFDGQYFTYFHQKEKKREFLSLKQGNLTVEEYETRFNELMLYVPDLVKSEQDQA SYFEEGLRNEIRERMTVTGREPHKEVQVKRGKDSAISGSTTSVSVTSPRPPFPPSQQR PSRFSRSSMTGSGKSFRGRATVAASSPPARTDIQRRDSSGLPPRQGIAIRSDSGSDRS YVSTTFASITNRNLSPLEGEIIVHTHLGEQLIRNTCYRDCGVRVGEEEFRGDLIPLEI LDFDLILGMDWLTAHWANMDCFRKEVVLRNSEGAEIVFVGERRVLPSCVISAIKASKL VQKGYPAYLAYVIDTSKGEPKLEDVPIVSEFPDVFSDDLPGLPPDRELEFPIDLLPST APISIPPYRMAPAELKELKVQLQDLVDKGFIRPSISPWGAPVLFVKKKDGTLRLCIYY RQLNRVTIKNKYPLPRIDDLFDQLRGAMVFSKIDLRSGYYQLRIKEQDVHKTAFRTRY GHYEFLVMPFGLTNAPTVFMDLMNRVFHPYLDKFVIVFIDDILVYSKNDDEHAAHLRI VLQTLRERQLYVKFSKCEFWLKEVVFLGHVVSGAGIYVDPKKIEAILQWEQPRTDEKV IAYASRQLKKHETNYPTHDLELAAVVFALKIWRHYLYGIQLNNGEDGTLLASFVVRPS LLNQIRELQKSDNWLKQEVQKLQDGEASEFRLSDDGTLMLRDRICVPKDDXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXRKLILPPTLYIPEAPRCIGLLKKVIGGRPLPI PEWKWEHVTMDFVLGLPRTQSGKDAIWVIVDRLTKSAHFLAIHSTYSIERLARLYIDE IVRLHGVPISIVSDRDPRFTSRLWLKFQEALGTKLRFSTAFHPQTDGQSERTIQTLED MLRACVIDFIGSWDRHLPLVEFAYNNSFQSSIGMAPYEALYGRKCRTPLCWDEVGERK LVNVELIDLTNDKYQLGETLDFVLCQGGESSDKGKEIASEDQ" mobile_element 15799990..15800794 /note="source:CACAO_M_E44599_F33_scaffold_6 4915 5719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15800895..15800934 /note="source:INTACT95_F143_scaffold_9-int 13303 13343" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15802565..15803449 /note="source:CACAO_M_E12297_F14_scaffold_3 7558 8443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15803550..15804187 /note="source:CACAO_M_E44265_F33_scaffold_5 967 1604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15804177..15804419) /note="source:CACAO_M_E52760_F33_scaffold_8 8812 9054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15804520..15805321) /note="source:CACAO_M_E52760_F33_scaffold_8 1 797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15806054..15806186) /note="source:INTACT280_F60_scaffold_5-int 1600 1733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15809112..15809282) /note="source:CACAO_M_S_E144909_F278_scaffold_10 7461 7627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15809268..15809705) /note="source:scaffold_8_CACTA_0858 1177 1623" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15809970..15810234 /note="source:CACAO_M_S_E17777_F2_scaffold_3 2523 2791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15810414..15810773 /note="source:CACAO_M_S_E17777_F2_scaffold_3 3080 3469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15811064..15811776 /note="source:CACAO_M_S_E17777_F2_scaffold_3 7341 8050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15811763..15812923) /note="source:scaffold_8_CACTA_0858 7576 8735" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15813097..15816045 /note="source:CACAO_M_E14953_F33_scaffold_3 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15817941..15820893 /note="source:CACAO_M_E14955_F33_scaffold_3 1 2937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15821884..15822515 /note="source:CACAO_M_E618_F42_scaffold_1 1 631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15823390..15831636 /note="source:CACAO_M_E14957_F86_scaffold_3 711 8957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15831637..15832142 /note="source:CACAO_M_E56800_F86_scaffold_8 620 1126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15832143..15833359 /note="source:CACAO_M_S_E17277_F85_scaffold_3 1 1215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15853265..15853683 /note="source:scaffold_9_CACTA_0934 6020 6432" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15854575..15854954 /note="source:CACAO_M_E69737_F323_scaffold_9 1553 1930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15855055..15856071 /note="source:CACAO_M_E69760_F9_scaffold_9 8679 9669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15856050..15858326) /note="source:INTACT918F_F377_scaffold_6-int 4650 6946" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(15858290..15858605) /note="source:CACAO_M_E43454_F25_scaffold_5 3810 4124" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15858323..15859405) /note="source:INTACT759_F323_scaffold_6-int 2358 3443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15859506..15862170) /note="source:INTACT918F_F377_scaffold_6-int 1451 4134" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 15862335..15863520 /note="source:CACAO_M_E69737_F323_scaffold_9 1193 2368" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15863623..15865115) /note="source:INTACT918F_F377_scaffold_6-int 10937 12463" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(15865228..15867084) /note="source:INTACT759_F323_scaffold_6-int 6239 8088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15868160..15870711 /note="source:CACAO_M_E53587_F207_scaffold_8 13926 16468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15872483..15873062 /note="source:CACAO_M_E56693_F323_scaffold_8 1219 1799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15873164..15873378) /note="source:INTACT918F_F377_scaffold_6-int 5659 5873" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(15873670..15874417) /note="source:CACAO_M_E14593_F323_scaffold_3 793 1541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15874518..15875094) /note="source:INTACT918F_F377_scaffold_6-int 14110 14691" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(15875406..15875921) /note="source:INTACT918F_F377_scaffold_6-int 15981 16490" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(15876022..15876625) /note="source:CACAO_M_E14593_F323_scaffold_3 1 604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15964686..15965482) /note="source:INTACT918F_F377_scaffold_6-int 15847 16648" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 15981478..16026398 /locus_tag="TCM_013690" /note="dbxref CacaoGD:Thecc1EG013690" mRNA join(15981478..15981555,16020718..16021210, 16021681..16021769,16022254..16022489,16026371..16026398) /locus_tag="TCM_013690" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.52 coverage" mobile_element complement(16002367..16004414) /note="source:INTACT918F_F377_scaffold_6-int 10902 13002" /mobile_element_type="retrotransposon:LTR/Unclassified" assembly_gap 16009273..16019272 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(16019273..16020303) /note="source:CACAO_M_E84908_F12_scaffold_10 1 1032" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16020806..16021863) /locus_tag="TCM_013691" /note="dbxref CacaoGD:Thecc1EG013691" mRNA complement(join(16020806..16021093,16021199..16021863)) /locus_tag="TCM_013691" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.89 coverage" CDS complement(join(16020953..16021093,16021199..16021273)) /locus_tag="TCM_013691" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21659.1" /translation="MIATWSDSDESQIEEEKVAANLCYMERYVNTEVKERNMIDEHNY NDKIEEFEAITFMDIDFALPIYNKEKS" CDS join(16021722..16021769,16022254..16022469) /locus_tag="TCM_013690" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21658.1" /translation="MLLCFDHAFFYRTPNKWRRLRQRPNMVEKHRSIHFRQHSTKIQP DLALNGQIWWREAQDLVLPDQIPWLDLALYGQIQPRGSTDLVS" mobile_element 16023389..16023524 /note="source:CACAO_M_E3248_F5_scaffold_1 1639 1772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16023403..16023523) /note="source:INTACT224_F176_scaffold_8-int 2432 2552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16023513..16025206) /note="source:CACAO_M_S_E4591_F5_scaffold_1 17896 19627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16026343..16027115 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16027212..16028458 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5808 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16028468..16030418 /note="source:CACAO_LINE_E_97_scaffold_3 1 1951" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 16030420..16032016 /note="source:INTACT597_F267_scaffold_2-int 801 2383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16032032..16032432 /note="source:INTACT695_F301_scaffold_5-int 817 1219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16032914..16033144) /note="source:scaffold_10_CACTA_0139 8528 8756" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16036043..16036102 /note="source:CACAO_M_E3248_F5_scaffold_1 3645 3702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16036438..16036873) /note="source:scaffold_10_CACTA_0139 4878 5311" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16038223..16038309) /note="source:scaffold_5_CACTA_0607 7228 7313" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16039443..16042154) /note="source:CACAO_M_S_E102910_F165_scaffold_9 1 2706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16042188..16043329 /note="source:CACAO_M_S_E109750_F15_scaffold_9 1 1140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16043970..16044009) /note="source:CACAO_M_E49857_F85_scaffold_7 9123 9161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16044023..16045944) /note="source:scaffold_4_CACTA_0494 7858 9814" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16046102..16047443 /note="source:CACAO_M_E50528_F15_scaffold_7 1135 2475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16047444..16050394 /note="source:CACAO_M_S_E31462_F33_scaffold_3 1 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16050395..16050656) /note="source:CACAO_M_E72739_F15_scaffold_10 1 261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16050659..16050762) /note="source:INTACT135F_F90_scaffold_2-int 17184 17288" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16050660..16050779) /note="source:INTACT476_F7_scaffold_4-int 19430 19539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16054865..16063582) /note="source:CACAO_M_S_E4555_F7_scaffold_1 1199 9935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16063583..16066424 /note="source:CACAO_M_E22041_F15_scaffold_3 1 2842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16066403..16067552) /note="source:CACAO_M_E72739_F15_scaffold_10 1075 2733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16067653..16069347) /note="source:CACAO_M_E510_F15_scaffold_1 1 1729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16069348..16070426 /note="source:INTACT135F_F90_scaffold_2-int 11565 12643" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16077141..16077671 /note="source:CACAO_M_S_E50960_F369_scaffold_4 2714 3258" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16077673..16078351 /note="source:INTACT39F_F22_scaffold_1-int 3568 4226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16078595..16081631 /note="source:INTACT39F_F22_scaffold_1-int 4424 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16083067..16084193) /note="source:CACAO_M_S_E50808_F245_scaffold_4 10623 11747" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16084194..16086970 /note="source:CACAO_M_E22050_F15_scaffold_3 1 2777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16086971..16088829) /note="source:CACAO_M_S_E50808_F245_scaffold_4 1 1858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16088830..16089957 /note="source:CACAO_M_S_E50960_F369_scaffold_4 4639 5766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16091320..16091862) /note="source:scaffold_3_CACTA_0382 10002 10547" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16091875..16092160) /note="source:CACAO_M_E5899_F5_scaffold_2 19919 20201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16092460..16093645 /note="source:CACAO_M_S_E50960_F369_scaffold_4 5751 6939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16093639..16094079 /note="source:CACAO_M_S_E50960_F369_scaffold_4 8559 9001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16095981..16096300 /note="source:CACAO_M_E56674_F14_scaffold_8 1 319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16096301..16099136 /note="source:CACAO_M_E36168_F141_scaffold_5 1 2814" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16097592..16099140) /note="source:INTACT91_F141_scaffold_4-int 7310 8834" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16099126..16102822 /note="source:CACAO_M_E22722_F42_scaffold_3 2919 6615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16102800..16105249) /note="source:INTACT688_F14_scaffold_11-int 3272 5757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16105244..16105774) /note="source:INTACT688_F14_scaffold_11-int 2335 2866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16105758..16106063) /note="source:INTACT688_F14_scaffold_11-int 1868 2184" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16106061..16107372 /note="source:INTACT125_F13_scaffold_10-int 8227 9565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16107360..16109876 /note="source:CACAO_M_E12297_F14_scaffold_3 19510 21752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16109880..16110775 /note="source:CACAO_M_E58601_F7_scaffold_9 9905 10767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16110776..16113765 /note="source:CACAO_M_S_E31483_F7_scaffold_3 1 2990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16117726..16118723) /note="source:INTACT413_F209_scaffold_13-int 8608 9604" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16118659..16118741 /note="source:CACAO_M_E22722_F42_scaffold_3 8133 8221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16118721..16121644) /note="source:INTACT183F_F349_scaffold_3-int 7836 10750" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16121645..16123481 /note="source:CACAO_M_E47743_F7_scaffold_6 971 2584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16123181..16123516) /note="source:CACAO_M_E4676_F9_scaffold_2 6759 7093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16125671..16125754) /note="source:CACAO_M_E48538_F49_scaffold_6 6 98" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16132713..16132862 /note="source:scaffold_1_CACTA_0011 6539 6688" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16132862..16134628 /note="source:INTACT215F_F14_scaffold_3-int 9786 11539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16135335..16135776) /note="source:CACAO_M_E35674_F13_scaffold_5 3312 3741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16136406..16137556) /note="source:CACAO_M_E22348_F13_scaffold_3 8180 9332" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16137543..16138242 /note="source:CACAO_M_E59463_F12_scaffold_9 6087 6785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16138343..16138792 /note="source:CACAO_M_E59463_F12_scaffold_9 7068 7529" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16143237..16147944 /note="source:INTACT288_F14_scaffold_2-int 1 4743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16147944..16148793) /note="source:CACAO_M_S_E64832_F14_scaffold_5 3442 4309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16148944..16149546) /note="source:CACAO_M_S_E64832_F14_scaffold_5 10930 11512" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16149944..16150568) /note="source:CACAO_M_S_E64832_F14_scaffold_5 1933 2561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16150485..16150579) /note="source:scaffold_2_CACTA_0261 11420 11515" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16150569..16154189 /note="source:CACAO_M_S_E15589_F14_scaffold_2 4748 8392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16154193..16156829 /note="source:CACAO_M_S_E31502_F231_scaffold_3 1 2637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16156830..16158684) /note="source:INTACT154_F14_scaffold_8-int 1 1844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16158685..16158901) /note="source:scaffold_9_CACTA_0931 2640 2855" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16158901..16160621 /note="source:INTACT713_F309_scaffold_9-int 1027 2852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16159129..16161427) /note="source:scaffold_4_CACTA_0493 2799 5253" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16161550..16164170 /note="source:CACAO_M_S_E99244_F4_scaffold_9 9256 11877" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16164174..16166655) /note="source:scaffold_9_CACTA_0931 1 2478" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16166681..16168456 /note="source:scaffold_2_CACTA_0276 6398 8181" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16169061..16169140 /note="source:CACAO_M_E57016_F14_scaffold_8 1088 1166" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16169152..16170034) /note="source:CACAO_M_E85923_F17_scaffold_12 2 855" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16171234..16171774 /locus_tag="TCM_013701" /note="dbxref CacaoGD:Thecc1EG013701" mRNA join(16171234..16171423,16171518..16171774) /locus_tag="TCM_013701" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(16171285..16171423,16171518..16171627) /locus_tag="TCM_013701" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21660.1" /translation="MKKNWKSVKETALTSLTYLCRRRTIPVSEAIIYNISQLSDNKKP LKVAEGTIKSSFKDLSPHLSRLIPAWYATKEDVKNLQL" gene complement(16173374..16188374) /locus_tag="TCM_013702" /note="dbxref CacaoGD:Thecc1EG013702" mRNA complement(join(16173374..16174007,16188116..16188374)) /locus_tag="TCM_013702" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(16173790..16173999) /locus_tag="TCM_013702" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21661.1" /translation="MLRLAIHKGEWSKKVRESTPPYEQPIQAGVKHINNNTHAGHHAL DFDYCLSKIDKFLDRLWVLRLAVLK" mobile_element complement(16177249..16177778) /note="source:INTACT1604F_F75_scaffold_10-int 4176 4698" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16179885..16180022) /note="source:INTACT146F_F14_scaffold_2-int 17326 17473" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16181232..16182475) /note="source:INTACT1604F_F75_scaffold_10-int 2610 3857" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16182476..16184255) /note="source:INTACT1604F_F75_scaffold_10-int 683 2444" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16184255..16184941 /note="source:scaffold_4_CACTA_0490 2042 2744" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16185209..16186946) /note="source:INTACT695_F301_scaffold_5-int 1929 3621" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16186943..16187140) /note="source:INTACT1604F_F75_scaffold_10-int 490 690" /mobile_element_type="retrotransposon:LTR/Copia" gene 16188469..16191037 /locus_tag="TCM_013704" /note="dbxref CacaoGD:Thecc1EG013704" mRNA join(16188469..16190584,16190986..16191037) /locus_tag="TCM_013704" /product="AAA-ATPase 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014045" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018290t1" /inference="similar to AA sequence:ricco:30147.m014045" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05312t00001" CDS 16189037..16190560 /locus_tag="TCM_013704" /note="dbxref ricco:30147.m014045; paralog of Thecc1EG018290t1" /codon_start=1 /product="AAA-ATPase 1" /protein_id="EOY21662.1" /db_xref="TAIR:AT5G40010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HV41" /translation="MVPSTISEMWTTMGSTIASFMFLWAIVRQYCPYEVRRYFEKYTH RIIGVFYPYIKISIHEFTGDRLKRSEAYVAVEAYLSANSSKSAKRLKAEMGKDSTNLV LSMDEYERVTDEYRGAKVWWVASKVVSPTRPMSYYPEQEKRYYRLTFHKRYREMITGA YLEHVVKEGKEIRVRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMALDPDR KKEIIEDLVTFSKSKEFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLE LTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKPLHVDEKEKMDKEK KESKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIE LSYCSFEGFKVLAKNYLNLETHPMFDTIHGLMKETNITPADVAENLMPKSPLDNAEKC LSSLIQALEEAKEEAANRNAEKEAAARKIAEQEEATSKQTEDPIPAREDVGRSQENN" gene complement(16191040..16199854) /locus_tag="TCM_013705" /note="dbxref CacaoGD:Thecc1EG013705" mRNA complement(join(16191040..16192430,16192509..16192691, 16192830..16192872,16193106..16193229,16193331..16193423, 16195113..16195269,16195427..16195533,16196295..16196376, 16196452..16196489,16196598..16196684,16198853..16198963, 16199056..16199854)) /locus_tag="TCM_013705" /product="DDT domain-containing protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014046" /inference="similar to AA sequence:ricco:30147.m014046" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3271t3" CDS complement(join(16191689..16192430,16192509..16192691, 16192830..16192872,16193106..16193229,16193331..16193423, 16195113..16195269,16195427..16195533,16196295..16196376, 16196452..16196489,16196598..16196684,16198853..16198963, 16199056..16199481)) /locus_tag="TCM_013705" /note="dbxref ricco:30147.m014046" /codon_start=1 /product="DDT domain-containing protein" /protein_id="EOY21663.1" /db_xref="TAIR:AT1G18950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IDY7" /translation="MSLDSSPSLPIPPDPPQNDTLPAQNDTQTTQTPETTAANATPTP TPPLTRSNRPSRACTIRAAQRLYAQQQQATIERRQKPAKKEQQHQHKDENDGSSSPQQ QCSGSSKIVTPLVGPPEPSQLPRWSIRSMWELASVLNFLHVFRPLLNINAEFSAEEFE TALITPNDTLGDIHIPLLKAIPPITRMALTRDTWVTVLCRKLRDWWHWVADGDLPIVA SHGVEVEVYKSLDPGVRVVILKALCDIRVEQEDIRNYIDNSLKHGVQLSAFRKERVGG DSQGISYWYEDDPAVGHRLYREIRKVEFKKAKMKGSHVPNSTTYLWETVATNLEEFQD ASEKLFASKNRTEASVGKKLKNDMLPEIEKEHKRKERLLKKQHRQALLLDNFLAVDGL APGRSLRDRKPVTYTFDDYDRSINEAIKITKRKPPSPDPLNRRDVAKPEPSANGKLSG PSYAAEQDNYNLLSPKSPEYDDFDDNKSGDLDRSNRRRQRPQRYSAKEFVEAVSDNEA DFDSDDDIVGEAIYDEEYLRKRKQRRRQSSSSEGDEEYRWEEENAEDEEEEEEEEDSL SISEDSDEAPKFKKLPGRTRRETKLRSVDELQSGLRRSKRATRNRINYRQYELSESET ESKPEKSNPSDEHSDASENEEYSAGSQDSNGTDDDQEMKVDPPVAGNSETVEKEQSQP PEQSNGLGQDEADGVRKRRFLDLNELAPGSGFDDGPNTIMKDDGRNDF" gene 16203269..16205663 /locus_tag="TCM_013706" /note="dbxref CacaoGD:Thecc1EG013706" mRNA join(16203269..16203346,16205472..16205663) /locus_tag="TCM_013706" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3136t1" CDS join(16203307..16203346,16205472..16205599) /locus_tag="TCM_013706" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21664.1" /translation="MARNLKSIKEERQGRIGHQTRLESCSMTFSSFSNEMDIFFSRNL DHRMIVQSLLS" mobile_element complement(16209582..16209805) /note="source:CACAO_M_S_E33095_F231_scaffold_4 1778 2620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16209806..16210723 /note="source:scaffold_5_CACTA_0591 4823 5757" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16210824..16210989 /note="source:CACAO_M_E43428_F369_scaffold_5 1264 1421" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16210841..16212357 /note="source:scaffold_5_CACTA_0591 5722 7190" /mobile_element_type="transposon:TIR/CACTA" gene 16213139..16218750 /locus_tag="TCM_013707" /note="dbxref CacaoGD:Thecc1EG013707" mRNA join(16213139..16213549,16218566..16218750) /locus_tag="TCM_013707" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 16213191..16213481 /locus_tag="TCM_013707" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21665.1" /translation="MSASPGLISMDGIKTLQAGITGGISATISTYHHPYRYINSHMGT EIHSTANQINIRNSFLGRKNQSTNKAIMPLSFTISLSNLNSHLLSFNCLKLN" mobile_element 16218696..16220134 /note="source:CACAO_M_E43672_F60_scaffold_5 488 1931" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16220939..16221013) /note="source:CACAO_M_E23841_F392_scaffold_4 2777 2852" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16221517..16222911) /locus_tag="TCM_013708" /note="dbxref CacaoGD:Thecc1EG013708" mRNA complement(join(16221517..16221804,16222714..16222911)) /locus_tag="TCM_013708" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS complement(join(16221624..16221804,16222714..16222742)) /locus_tag="TCM_013708" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21666.1" /translation="MFELEKMIWRDGGLFPLVILAYSALMPSVEITPNDVDVRRFLLS MTMILNSLLGHAHDLFLLLKALSCK" mobile_element 16222175..16222251 /note="source:CACAO_M_E85491_F369_scaffold_11 1269 1351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16224042..16226619 /note="source:CACAO_M_E43620_F144_scaffold_5 1 2588" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16226624..16226829) /note="source:CACAO_M_E52239_F256_scaffold_7 3828 4033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16231399..16234514 /note="source:CACAO_M_E22090_F51_scaffold_3 1 3116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16236602..16243964 /note="source:CACAO_M_E69228_F89_scaffold_9 1 7373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16243954..16244042 /note="source:INTACT146F_F14_scaffold_2-int 3163 3250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16243963..16247150) /note="source:scaffold_2_CACTA_0262 11404 14561" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16247121..16247394 /note="source:CACAO_M_S_E83372_F14_scaffold_6 13305 13580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16247383..16248170 /note="source:CACAO_M_E12544_F89_scaffold_3 2226 3013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16251531..16251626 /note="source:CACAO_M_S_E1495_F60_scaffold_1 491 591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16251634..16252858 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3531 4755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16254372..16254435 /note="source:CACAO_M_E427_F230_scaffold_1 1089 1152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16261586..16262617) /note="source:scaffold_8_CACTA_0859 16513 17531" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16265317..16265757 /note="source:CACAO_Mariner_E229_scaffold_9 10882 11340" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(16265787..16269433) /note="source:CACAO_Mariner_E229_scaffold_9 6956 10647" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 16269431..16272549 /note="source:CACAO_M_E5899_F5_scaffold_2 19650 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16271569..16272158 /note="source:scaffold_2_CACTA_0262 7612 8427" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16272524..16273786) /note="source:INTACT329_F199_scaffold_2-int 4910 6428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16272550..16272837 /note="source:scaffold_2_CACTA_0262 8428 8828" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16273787..16276785 /note="source:CACAO_M_E22099_F277_scaffold_3 1 2999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16276797..16280477) /note="source:INTACT329_F199_scaffold_2-int 1218 4907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16280728..16281665) /note="source:INTACT329_F199_scaffold_2-int 6564 7497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16282976..16284211 /note="source:CACAO_M_E42809_F5_scaffold_5 3676 4913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16284263..16284942 /note="source:scaffold_5_CACTA_0591 14741 15420" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16285240..16285877) /note="source:CACAO_M_S_E1495_F60_scaffold_1 3637 4277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16288282..16288865 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4294 4879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16290689..16291037 /note="source:CACAO_M_S_E121934_F7_scaffold_10 4506 4866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16291252..16293149 /note="source:CACAO_M_E52239_F256_scaffold_7 20004 21280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16293150..16295972) /note="source:CACAO_M_E52654_F15_scaffold_7 1 2853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16295973..16296101 /note="source:INTACT329_F199_scaffold_2-int 8155 8285" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16296482..16296736) /note="source:scaffold_8_CACTA_0859 15572 15826" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16299494..16299774 /note="source:scaffold_9_CACTA_0929 4522 4800" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16299950..16301100 /note="source:CACAO_M_S_E15173_F4_scaffold_2 12552 13718" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16301101..16302266 /note="source:CACAO_M_S_E121934_F7_scaffold_10 4503 5303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16303331..16304402) /note="source:CACAO_M_S_E6875_F7_scaffold_2 3228 4300" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16304402..16304841 /note="source:CACAO_M_S_E15173_F4_scaffold_2 1175 1627" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16304839..16306031 /note="source:INTACT90_F13_scaffold_4-int 12182 13361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16306032..16306272 /note="source:CACAO_M_S_E15173_F4_scaffold_2 1623 1864" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16306721..16307378 /note="source:CACAO_M_E86305_F7_scaffold_15 6225 6885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16310061..16310924 /note="source:scaffold_5_CACTA_0591 10055 10909" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16311795..16312808 /note="source:scaffold_5_CACTA_0591 14452 15467" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16320676..16322534) /note="source:CACAO_M_E52239_F256_scaffold_7 20574 22448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16320911..16323364 /note="source:scaffold_5_CACTA_0591 4823 7190" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16324162..16334387 /note="source:INTACT17_F7_scaffold_3-int 1 10226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16335679..16335744) /note="source:INTACT65_F13_scaffold_1-int 13422 13490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16337744..16337791 /note="source:CACAO_M_S_E15173_F4_scaffold_2 6094 6144" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16337751..16340169 /note="source:CACAO_M_E4631_F369_scaffold_2 8194 10613" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16340452..16340625) /note="source:CACAO_M_E3884_F22_scaffold_1 13089 13265" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16341830..16341894) /note="source:scaffold_6_CACTA_0702 12209 12269" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16343270..16343555 /note="source:scaffold_2_CACTA_0261 490 764" /mobile_element_type="transposon:TIR/CACTA" gene 16345565..16348457 /locus_tag="TCM_013719" /note="dbxref CacaoGD:Thecc1EG013719" mRNA join(16345565..16346103,16346431..16347582, 16347655..16348457) /locus_tag="TCM_013719" /product="Nodulin / Major Facilitator Superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008084001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013735t1" /inference="similar to AA sequence:ricco:30147.m014050" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1615t1" CDS join(16345612..16346103,16346431..16347582, 16347655..16347681) /locus_tag="TCM_013719" /note="dbxref ricco:30147.m014050; paralog of Thecc1EG013735t1" /codon_start=1 /product="Nodulin / Major Facilitator Superfamily protein" /protein_id="EOY21667.1" /db_xref="TAIR:AT1G74780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R925" /translation="MGSLNLKMKYKLNNKWISTVGSIWIQCTSGSLYTFSIYSPTLKS TQNYDQSTLDTVSVFKDIGANCGVLSGILYTFAVPYNRHSRLASFGGPWLVHVAGAIQ SFTGYFLIWAAVIGLIPRPPVVGMCLFMLLAAHAQSFFNTANVVTAVRNFPDYSGTAV GLMKGFLGLSGAILIQVYQTIFNNKPTSYLLMLALLPTINPFLLMWFVRTYDTNEQDE KKLLNAISLVSLLVGAYLMAIIILEHIVHLQLVVRVLILFVLLVLVASPLCIALRAQE RGFPVIQQSLFSEGDKLLDEPQQLDAGTAAQDPACYHHFSTDADQEINANDTRNPEEE ENLNLLQAMCTVNFWILFFAMACGMGSGLATVNNLGQIGESLGYLSFETNTLVSLWSI WNFLGRFGAGYVSDYFLHVRGCARPLFMVLTLATMSVGHAVIASGLPGAMYAGSILVG VCYGSQWSLMPTIASEIFGVRHMGTIFNGITIASPVGSYIFSVKVVGYIYDMEASGEG NSCTGTHCFMLSYLIMASATLLGSLAALCLFFQTKSFYNQVSGPPPYH" gene 16348601..16355911 /locus_tag="TCM_013720" /note="dbxref CacaoGD:Thecc1EG013720" mRNA join(16348601..16348762,16349652..16349987, 16350488..16350581,16351373..16351458,16351581..16351630, 16352113..16352182,16352301..16352382,16352539..16352963, 16353189..16353716,16354369..16354659,16355621..16355911) /locus_tag="TCM_013720" /product="Proline-rich family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g01510.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s09450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04958t00001" CDS join(16349907..16349987,16350488..16350581, 16351373..16351458,16351581..16351630,16352113..16352182, 16352301..16352382,16352539..16352963,16353189..16353716, 16354369..16354587) /locus_tag="TCM_013720" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Proline-rich family protein isoform 1" /protein_id="EOY21668.1" /db_xref="Phytozome:POPTR_0012s09450.1" /db_xref="TAIR:AT5G62640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R923" /translation="MKTTKGGKVMNPTDAYRKELRKKELKRNKKERKKVREVGILKKD PQAIMEQIEKLEMMKAEGALDKARKHKKRQLEDTLNLVLKKRKEYEDKMKEKGETPVM FSHLGPPRRRTTAEEEERSKHPKPEDSVYYHPTLNPTGAPPPGKPPMYKSSIGPRIPL SAASSSAAASSSNTESEDVPVAVPPPPPPPPPPLPETGISNSVDGSVVPASLPLPPPP PMPPKPATANLGIPLPPPPGPPPPPGPPPKEQVTVRPPLPPPPPLLQTSQPPPPGTSG NEKEKISVLSDDSTSKELAQVPSVLPPPPPGLPPKLAISQAEGAPSEADANNHPATKE APKMVPPPPPPPRQQPPVPGPAMVPALRPDVLPPGISRFPPPPHPDMRAPLSATGLPG QAAPSGMMVPLIPRPPFGPPPGPPPMMRPPLPPGPPPTALDDDNSANRPLLPQKPSYV KSAASTVVKRPLAQHQPELTAMVPASVRVRRETAAPRAKPKPLLSTTTVNAKPVAPTI VKPESTSSSAPKGQSIDDSYMAFLEDMKALGALDST" mRNA join(16350489..16350581,16351373..16351458, 16351581..16351630,16352113..16352182,16352338..16352382, 16352539..16352963,16353189..16353716,16354369..16354765) /locus_tag="TCM_013720" /product="Proline-rich family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g01510.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s09450.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc428t2; inference alignment:Newbler:10:TSA:cgbaB_g04958t00001" mRNA join(16351606..16351630,16352096..16352182, 16352301..16352382,16352539..16352963,16353189..16353716, 16354369..16354761) /locus_tag="TCM_013720" /product="Proline-rich family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g01510.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s09450.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc282t4; alternateUTRof:Thecc1EG013720t2; inference alignment:Newbler:10:TSA:cgbaB_g04958t00001" CDS join(16352364..16352382,16352539..16352963, 16353189..16353716,16354369..16354587) /locus_tag="TCM_013720" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Proline-rich family protein isoform 2" /protein_id="EOY21669.1" /db_xref="Phytozome:POPTR_0012s09450.1" /db_xref="TAIR:AT5G62640.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R923" /translation="MYKSSIGPRIPLSAASSSAAASSSNTESEDVPVAVPPPPPPPPP PLPETGISNSVDGSVVPASLPLPPPPPMPPKPATANLGIPLPPPPGPPPPPGPPPKEQ VTVRPPLPPPPPLLQTSQPPPPGTSGNEKEKISVLSDDSTSKELAQVPSVLPPPPPGL PPKLAISQAEGAPSEADANNHPATKEAPKMVPPPPPPPRQQPPVPGPAMVPALRPDVL PPGISRFPPPPHPDMRAPLSATGLPGQAAPSGMMVPLIPRPPFGPPPGPPPMMRPPLP PGPPPTALDDDNSANRPLLPQKPSYVKSAASTVVKRPLAQHQPELTAMVPASVRVRRE TAAPRAKPKPLLSTTTVNAKPVAPTIVKPESTSSSAPKGQSIDDSYMAFLEDMKALGA LDST" CDS join(16352364..16352382,16352539..16352963, 16353189..16353716,16354369..16354587) /locus_tag="TCM_013720" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Proline-rich family protein isoform 2" /protein_id="EOY21670.1" /db_xref="Phytozome:POPTR_0012s09450.1" /db_xref="TAIR:AT5G62640.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R923" /translation="MYKSSIGPRIPLSAASSSAAASSSNTESEDVPVAVPPPPPPPPP PLPETGISNSVDGSVVPASLPLPPPPPMPPKPATANLGIPLPPPPGPPPPPGPPPKEQ VTVRPPLPPPPPLLQTSQPPPPGTSGNEKEKISVLSDDSTSKELAQVPSVLPPPPPGL PPKLAISQAEGAPSEADANNHPATKEAPKMVPPPPPPPRQQPPVPGPAMVPALRPDVL PPGISRFPPPPHPDMRAPLSATGLPGQAAPSGMMVPLIPRPPFGPPPGPPPMMRPPLP PGPPPTALDDDNSANRPLLPQKPSYVKSAASTVVKRPLAQHQPELTAMVPASVRVRRE TAAPRAKPKPLLSTTTVNAKPVAPTIVKPESTSSSAPKGQSIDDSYMAFLEDMKALGA LDST" gene 16354910..16360792 /locus_tag="TCM_013721" /note="dbxref CacaoGD:Thecc1EG013721" mRNA join(16354910..16355025,16355558..16355782, 16356397..16357217,16357309..16357408,16358085..16358263, 16358652..16358893,16359023..16359053,16359428..16360792) /locus_tag="TCM_013721" /product="Catalytics, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039157" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013723t1" /inference="similar to AA sequence:frave:gene09555" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1980t1" CDS join(16354941..16355025,16355558..16355782, 16356397..16357217,16357309..16357408,16358085..16358263, 16358652..16358893,16359023..16359053,16359428..16359805) /locus_tag="TCM_013721" /note="dbxref frave:gene09555; paralog of Thecc1EG013723t1" /codon_start=1 /product="Catalytics, putative" /protein_id="EOY21671.1" /db_xref="TAIR:AT1G74790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSG3" /translation="MYYRLTVALLTDKVYLIKSLGDWSLLHLTFQARLFVPLKFITSV LNFDAGAPLKLEKSLNFCSYTGIACCDSAKDLQVHKSFQALNVSDAACASVLKSILCS VIFCSQFQACSQFSAQLYEVKSGLREVPVLCNSTGTHKSPHFSTGASIGFCPKVWDIC GNISILNPPFVQSKQGRFGINLSSSPSKLMDQWQSRKDFCEAFGGPSDEGEVCFDGES VLFVHEEAPQHPEGLCLEKIENGAYLNLIPHSDGSNRVFLSNQKGKIWLANVPDVGSS EVLGTVESQPFLDITDQVLFDTEFGLMGMAFHPNFANNGRFFLSFNCDKMQHQGCFAR CLCNIDVNCDASKIGADNGIQPCQYHSIIAEFTFNGTAPKPSMSKRANPLEVRRIVTM GLPYRGGHAGQLLLDLKMGEKEINDLVLWGNYSIPRDNPYVEDRELGPEIWAFGFRNP WRCSFDSERTSYFLCGDTGQDQYEEVDIVTKEGNYGWRVYEGPLPFHPQLSPGGSTPP SPINPISPVMGYSHSEIDKNLGLASIIGGFFYRSLADPCINGRYIYMDLYGEAEPLST EAIWAGSEYPLNSGGFTTSRIPFRCARDTPIPCVITTGSSSPSLGFVFSLTEDNRIDF YILTSTGVYRVARPSRCNLKCSKEIVANVTPTSHSSSSVAINGLRGCRFIGLLVFFVL VLSL" mobile_element complement(16362222..16362282) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5693 5748" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16362669..16368345 /locus_tag="TCM_013723" /note="dbxref CacaoGD:Thecc1EG013723" mRNA join(16362669..16363279,16363419..16363576, 16364544..16365341,16365418..16365634,16365980..16366203, 16366716..16366957,16367150..>16367177) /locus_tag="TCM_013723" /product="Catalytics isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008086001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018324t1" /inference="similar to AA sequence:ricco:30147.m014047" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc36t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3322t2" mRNA join(16363103..16363279,16363419..16363576, 16364544..16365341,16365418..16365634,16366025..16366203, 16366716..16366957,16367150..16368345) /locus_tag="TCM_013723" /product="HIPL1 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008086001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018324t1" /inference="similar to AA sequence:ricco:30147.m014047" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3322t2" CDS join(16363189..16363279,16363419..16363576, 16364544..16365341,16365418..16365634,16366025..16366203, 16366716..16366957,16367150..16367537) /locus_tag="TCM_013723" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014047; paralog of Thecc1EG018324t1" /codon_start=1 /product="HIPL1 protein isoform 1" /protein_id="EOY21672.1" /db_xref="TAIR:AT1G74790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSG3" /translation="MESVFAIIFLFSNLLLLPYPSFSFPLCTNSRAPLTLNTTLKFCS YNGSSCCNSTEDSQLQRQFQAMNISHPSCASLLQSVLCARCDPFSAKLFTIDSVTRPV PLLCNSTVSTNSSQSNQATNDFCSQVWDTCQNVSILNSPFAPSLQGQAGAPVNSNFTK LTELWQSKIDFCNAFGGASTDASVCYDGKPVTLNETGTPSPPHGLCLEKIGNGSYLNM VAHPDGSNRAFFSNQQGKIWLATIPEVGLGGTLELDESNPFIDLTDEVHFDTAFGMMG IAFHPNFAQNGRFFASFNCDKGKSPGCTGRCSCNSDVNCDPSKLPTDNGAQPCQYQSV IAEYTANGTGSQPSSAKTAKSLEVRRIFTMGLPFTSQHGGQILFGPTDGYLYFMMGDG GGDGDPYNFAQNKKSVLGKIMRLDVDDIPSAAEINRLGLWGNYSIPKDNPFSQDEELL PEIWALGLRNPWRCSFDLERPSYFMCGDVGEDLYEEVDIISKGGNYGWRVYEGPYPFN PTSSPGGNTSINSISPILPVMGYNHSEVNKNVGSASIIGGYFYRSNTDPCMYGRYLYA DLYSGALWAATEDPGNSGNFSTSTIPFGCARKSPIQCSTVPDSALAALGYIYSFGQDN SKDIYLLTSSGVYRVVPPSRCSYTCSKENVTAVESPSPTTSPPSHANQLHPAFLLSAL LLLLYNLS" CDS join(16363189..16363279,16363419..16363576, 16364544..16365341,16365418..16365634,16365980..16366203, 16366716..16366957,16367150..>16367177) /locus_tag="TCM_013723" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014047; paralog of Thecc1EG018324t1" /codon_start=1 /product="Catalytics isoform 2" /protein_id="EOY21673.1" /db_xref="TAIR:AT1G74790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSG3" /translation="MESVFAIIFLFSNLLLLPYPSFSFPLCTNSRAPLTLNTTLKFCS YNGSSCCNSTEDSQLQRQFQAMNISHPSCASLLQSVLCARCDPFSAKLFTIDSVTRPV PLLCNSTVSTNSSQSNQATNDFCSQVWDTCQNVSILNSPFAPSLQGQAGAPVNSNFTK LTELWQSKIDFCNAFGGASTDASVCYDGKPVTLNETGTPSPPHGLCLEKIGNGSYLNM VAHPDGSNRAFFSNQQGKIWLATIPEVGLGGTLELDESNPFIDLTDEVHFDTAFGMMG IAFHPNFAQNGRFFASFNCDKGKSPGCTGRCSCNSDVNCDPSKLPTDNGAQPCQYQSV IAEYTANGTGSQPSSAKTAKSLEVRRIFTMGLPFTSQHGGQILFGPTDGYLYFMMGDG GGDGDPYNFAQNKKSVLGKIMRLDVDDIPSVCHSFQLTAQYVVPGAAEINRLGLWGNY SIPKDNPFSQDEELLPEIWALGLRNPWRCSFDLERPSYFMCGDVGEDLYEEVDIISKG GNYGWRVYEGPYPFNPTSSPGGNTSINSISPILPVMGYNHSEVNKNVGSASIIGGYFY RSNTDPCMYGRYLYADLYSG" mobile_element 16371434..16372609 /note="source:scaffold_2_CACTA_0261 1752 2916" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16372342..16373758 /note="source:CACAO_M_E58601_F7_scaffold_9 4290 5673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16373761..16373941 /note="source:INTACT103_F9_scaffold_4-int 15267 15465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16373947..16375020 /note="source:CACAO_M_E69800_F12_scaffold_9 13540 14616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16380168..16382788 /note="source:CACAO_M_E22127_F369_scaffold_3 1 2621" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16384829..16385406 /note="source:scaffold_2_CACTA_0260 3905 4484" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16386692..16386754) /note="source:INTACT405F_F91_scaffold_4-int 310 369" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16386734..16386804) /note="source:scaffold_6_CACTA_0702 12205 12269" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16391283..16391396) /note="source:CACAO_M_E3884_F22_scaffold_1 13174 13280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16391443..16391599) /note="source:CACAO_M_E3884_F22_scaffold_1 13081 13245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16393248..16396250 /note="source:CACAO_M_E85348_F277_scaffold_11 1 3007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16396518..16397021 /note="source:CACAO_M_E14113_F106_scaffold_3 1 503" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16397022..16399968 /note="source:CACAO_M_E22132_F44_scaffold_3 1 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16399969..16401548 /note="source:CACAO_M_E14113_F106_scaffold_3 22083 23654" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16403754..16404102) /note="source:CACAO_M_E3884_F22_scaffold_1 12529 12868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16403960..16404182) /note="source:scaffold_6_CACTA_0702 26 230" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16404373..16405197) /note="source:INTACT405F_F91_scaffold_4-int 61 910" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16404844..16405308 /note="source:INTACT135F_F90_scaffold_2-int 17050 17476" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16404929..16405309) /note="source:CACAO_M_E42809_F5_scaffold_5 17665 18040" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16406146..16407997) /note="source:CACAO_M_E14113_F106_scaffold_3 3707 5601" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16406568..16408693) /note="source:scaffold_2_CACTA_0261 1782 3889" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16408783..16408876 /note="source:CACAO_M_S_E1495_F60_scaffold_1 1865 1957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16408802..16409813) /note="source:CACAO_M_E47740_F12_scaffold_6 5723 6719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16411577..16411705 /note="source:CACAO_M_E56674_F14_scaffold_8 12884 13027" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16413372..16413496) /note="source:CACAO_M_E3884_F22_scaffold_1 18350 18472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16415101..16415234) /note="source:INTACT103_F9_scaffold_4-int 17588 17711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16415299..16415368) /note="source:INTACT103_F9_scaffold_4-int 17508 17579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16415646..16416261) /note="source:scaffold_2_CACTA_0260 3897 4514" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16416950..16417778 /note="source:scaffold_2_CACTA_0261 1782 2574" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16419183..16421276) /note="source:CACAO_M_E14113_F106_scaffold_3 10689 12777" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16422442..16422522) /note="source:INTACT90_F13_scaffold_4-int 1275 1366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16422545..16423749 /note="source:CACAO_M_E58601_F7_scaffold_9 4315 5528" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16423751..16424841) /note="source:CACAO_M_E33787_F13_scaffold_4 1 1100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16424842..16425000 /note="source:CACAO_M_E14113_F106_scaffold_3 5446 5605" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16425001..16425094) /note="source:CACAO_M_E44210_F112_scaffold_5 13656 13752" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16433019..16433160 /note="source:INTACT33_F7_scaffold_5-int 11231 11373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16433153..16434591 /note="source:CACAO_M_E14839_F7_scaffold_3 1505 2972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16434592..16437572 /note="source:CACAO_M_S_E31589_F7_scaffold_3 1 2981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16437562..16437596 /note="source:CACAO_M_S_E1495_F60_scaffold_1 15223 15257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16438941..16439461) /note="source:scaffold_6_CACTA_0702 3112 3640" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16442944..16443591) /note="source:scaffold_6_CACTA_0702 9037 9678" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16443597..16443779 /note="source:CACAO_M_S_E4591_F5_scaffold_1 19587 19766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16444429..16444912 /note="source:CACAO_M_E14113_F106_scaffold_3 4098 4568" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16445023..16445909) /note="source:CACAO_M_E65323_F12_scaffold_9 7737 9372" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16445910..16446622) /note="source:scaffold_6_CACTA_0702 8212 8947" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16446565..16446630 /note="source:CACAO_M_E44899_F328_scaffold_6 3137 3204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16447715..16447780 /note="source:scaffold_1_CACTA_0011 8981 9046" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16447781..16447806 /note="source:INTACT170_F12_scaffold_5-int 6758 6857" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16449616..16449706 /note="source:CACAO_M_E65323_F12_scaffold_9 8868 8957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16450177..16450876 /note="source:scaffold_1_CACTA_0011 3952 4652" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16453845..16453956) /note="source:INTACT634_F12_scaffold_2-int 9549 9664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16453866..16455381) /note="source:scaffold_1_CACTA_0011 7525 9045" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16455200..16455514 /note="source:CACAO_M_E33282_F13_scaffold_4 7471 7796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16455641..16456340 /note="source:CACAO_M_E3248_F5_scaffold_1 3794 4497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16456623..16461574) /note="source:CACAO_M_S_E121173_F7_scaffold_10 279 5594" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16461955..16462181 /note="source:scaffold_3_CACTA_0382 6426 6651" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16462170..16462477 /note="source:scaffold_3_CACTA_0382 9598 9905" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16462497..16465746) /note="source:INTACT634_F12_scaffold_2-int 5986 9237" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16465747..16468684) /note="source:CACAO_M_E58913_F54_scaffold_9 1 2897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16468685..16472857 /note="source:CACAO_M_E69011_F12_scaffold_9 4033 8215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16472853..16474607 /note="source:CACAO_M_E35811_F12_scaffold_5 12963 14716" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16474608..16477568 /note="source:CACAO_M_E22152_F33_scaffold_3 1 2961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16477569..16478766 /note="source:CACAO_M_E35811_F12_scaffold_5 6710 7896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16478767..16483397 /note="source:INTACT85F_F12_scaffold_2-int 8181 12744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16483398..16484225 /note="source:scaffold_3_CACTA_0382 10149 10930" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16484489..16485090) /note="source:CACAO_M_E3248_F5_scaffold_1 1651 2275" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16485480..16485546 /note="source:CACAO_M_E73087_F12_scaffold_10 9010 9086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16486457..16486808) /note="source:CACAO_M_S_E99574_F14_scaffold_9 21536 21887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16494383..16495082) /note="source:CACAO_M_S_E32752_F12_scaffold_4 2469 3174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16497849..16498923 /note="source:CACAO_M_E59636_F12_scaffold_9 9144 10225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16498945..16499048) /note="source:CACAO_M_E52278_F17_scaffold_7 3048 3151" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16499052..16500296 /note="source:scaffold_9_CACTA_0934 121 1368" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16500297..16502263 /note="source:INTACT135F_F90_scaffold_2-int 5635 7622" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16502235..16502337 /note="source:CACAO_M_E12297_F14_scaffold_3 13977 14079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16502518..16504102 /note="source:INTACT135F_F90_scaffold_2-int 6054 7622" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16502950..16504077 /note="source:CACAO_M_E59641_F12_scaffold_9 3881 5006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16504078..16506934) /note="source:CACAO_M_S_E18520_F15_scaffold_3 2 2842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16506936..16507905 /note="source:INTACT616_F52_scaffold_1-int 1978 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16507905..16509768) /note="source:CACAO_M_E5899_F5_scaffold_2 11195 13057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16509733..16509789 /note="source:scaffold_9_CACTA_0934 9629 9681" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16511257..16511974) /note="source:CACAO_M_E41126_F15_scaffold_5 2098 2817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16512075..16514104) /note="source:CACAO_M_S_E118676_F14_scaffold_9 5514 7562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16513953..16514130 /note="source:CACAO_M_E42514_F40_scaffold_5 13155 13334" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16517517..16520481 /note="source:CACAO_M_E22167_F15_scaffold_3 1 2965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16520799..16520870 /note="source:INTACT293_F14_scaffold_5-int 8671 8743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16520806..16521080) /note="source:CACAO_M_S_E31635_F14_scaffold_3 4425 4702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16521047..16524203) /note="source:CACAO_M_E71405_F316_scaffold_10 4799 7988" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16524201..16525055) /note="source:CACAO_M_E5899_F5_scaffold_2 21637 22449" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16525055..16526461) /note="source:CACAO_M_E5899_F5_scaffold_2 19650 21083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16526955..16527627) /note="source:scaffold_3_CACTA_0382 2320 2977" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16527530..16527714 /note="source:INTACT563_F255_scaffold_10-int 4066 4249" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16527695..16530510) /note="source:CACAO_M_E12463_F12_scaffold_3 2934 5894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16530511..16531797 /note="source:INTACT563_F255_scaffold_10-int 4246 5528" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16531799..16534722 /note="source:CACAO_M_E22175_F54_scaffold_3 1 2924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16534723..16535632 /note="source:INTACT563_F255_scaffold_10-int 5525 6433" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16534725..16536205) /note="source:CACAO_M_E33787_F13_scaffold_4 4933 6389" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16536514..16537591) /note="source:CACAO_M_E5899_F5_scaffold_2 21637 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16537591..16537807) /note="source:CACAO_M_E5899_F5_scaffold_2 20867 21083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16537908..16538761) /note="source:CACAO_M_E5899_F5_scaffold_2 19650 20493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16559746..16560878) /note="source:INTACT407F_F356_scaffold_4-int 3870 5006" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16559748..16560755 /note="source:CACAO_M_S_E99214_F90_scaffold_9 7325 8323" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16560878..16560908) /note="source:CACAO_M_E59600_F12_scaffold_9 4904 4934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16560913..16561918) /note="source:CACAO_M_E12297_F14_scaffold_3 17035 18037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16569133..16569193) /note="source:CACAO_M_S_E89272_F5_scaffold_8 10935 10998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16570938..16573940 /note="source:CACAO_M_E50654_F277_scaffold_7 1 3007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16574462..16575756) /note="source:CACAO_M_E24592_F195_scaffold_4 1 1326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16575757..16576398 /note="source:scaffold_3_CACTA_0382 10608 11314" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16576399..16577469 /note="source:INTACT1218F_F372_scaffold_6-int 7242 8341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16577470..16579095 /note="source:scaffold_9_CACTA_0937 7423 9040" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16578836..16587243) /note="source:INTACT78_F136_scaffold_6-int 1 8094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16587244..16588057 /note="source:INTACT224_F176_scaffold_8-int 1744 2556" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16591997..16593919) /note="source:CACAO_M_E52278_F17_scaffold_7 11162 12982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16593920..16594912) /note="source:CACAO_M_E33160_F143_scaffold_4 5832 6803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16594913..16597880 /note="source:CACAO_M_S_E31650_F33_scaffold_3 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16597771..16597895) /note="source:CACAO_M_E52278_F17_scaffold_7 4351 4481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16597881..16599470) /note="source:CACAO_M_E33160_F143_scaffold_4 4173 5814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16599471..16600483) /note="source:CACAO_M_E52278_F17_scaffold_7 10155 11166" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16600484..16603585 /note="source:CACAO_M_S_E31651_F51_scaffold_3 1 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16603588..16603715) /note="source:CACAO_M_E52278_F17_scaffold_7 10009 10136" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16603707..16605102) /note="source:CACAO_M_E52278_F17_scaffold_7 2980 4375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16605651..16608813) /note="source:CACAO_M_S_E89272_F5_scaffold_8 6734 9835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16608813..16610451) /note="source:CACAO_M_E42395_F3_scaffold_5 18995 20697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16610571..16617585 /note="source:CACAO_M_E22186_F143_scaffold_3 1 7015" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16618344..16619122 /note="source:CACAO_M_E22186_F143_scaffold_3 7574 8352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16619223..16619647 /note="source:CACAO_M_E22186_F143_scaffold_3 8353 8777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16619748..16626646 /note="source:CACAO_M_E22186_F143_scaffold_3 8778 15676" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16627507..16633356) /locus_tag="TCM_013735" /note="dbxref CacaoGD:Thecc1EG013735" mRNA complement(join(16627507..16627768,16629658..16630232, 16630414..16631954,16632739..16633356)) /locus_tag="TCM_013735" /product="Nodulin-like / Major Facilitator Superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014051" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013719t1" /inference="similar to AA sequence:ricco:30147.m014051" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05614t00001" CDS complement(join(16630764..16631954,16632739..16633206)) /locus_tag="TCM_013735" /note="dbxref ricco:30147.m014051; paralog of Thecc1EG013719t1" /codon_start=1 /product="Nodulin-like / Major Facilitator Superfamily protein" /protein_id="EOY21674.1" /db_xref="TAIR:AT1G74780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R925" /translation="MVMENSFLDTKWMATAGSIWIQCTSGASYTFGIYSSILKSSQSY DQSTLDTVSVFKDIGANAGVLSGLLYATVTTLRSRFLSGPWVVHVAGAIQSFAGYFLM WASVVGLLRRPPVPLMCLFMLLAAHAQTFFNTANVVSGVENFQLFGGTIVGIMKGFLG LSGAILIQVYETLCEGDPTTFILILAITPTVVSLLLMPWVKIYRSSTVDDKKHLNGFS SIALSVAAYLMVIIILENIFTLPLWTRIITFMILLLLLAAPVGIAIKAHRDSVRLLQA PPPETSPLMNAPEPMPSTKYSQPQDPEEYHEIPGEPGQAKEASSSSDNSLEDEEDINL LQAMLSVNFWLLFIAMICGMGSGLATINNISQIGESLGYTTTERSSLVSLWSIWNFLG RFGAGFVSDIFLHKGWARPLFMVITLATLTFGHLIIASGFPGNLYVGSIVVGICYGSQ WSLMPTITSEIFGVRHMGTIFNTIAIASPVGSYIFSVRVIGYLYDKVAIGEDNSCYGT RCFMLSFFIMASVAFFGFLVAFALFLQTRRFYMQVVLRRLRRSS" mobile_element 16634982..16636433 /note="source:CACAO_M_E71405_F316_scaffold_10 4800 6243" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16636534..16638254) /note="source:INTACT118_F5_scaffold_9-int 9415 11133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16648573..16648782 /note="source:scaffold_4_CACTA_0494 10734 10943" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16652343..16652406) /note="source:INTACT363_F7_scaffold_9-int 3101 3164" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16652508..16652762) /note="source:CACAO_M_S_E1495_F60_scaffold_1 7738 7954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16654515..16654621) /note="source:CACAO_M_E14312_F12_scaffold_3 5315 5419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16654996..16655245) /note="source:INTACT551_F248_scaffold_7-int 10816 11061" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16655552..16655588 /note="source:INTACT1373F_F385_scaffold_8-int 16886 16922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16656546..16656630) /note="source:CACAO_M_E86361_F7_scaffold_15 6195 6281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16656611..16658872) /note="source:INTACT1373F_F385_scaffold_8-int 7174 9460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16658875..16668846) /note="source:INTACT363_F7_scaffold_9-int 1 9919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16669117..16669272) /note="source:INTACT33_F7_scaffold_5-int 11441 11591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16671645..16671706) /note="source:INTACT1440F_F102_scaffold_9-int 7941 8003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16673074..16673174 /note="source:INTACT423_F7_scaffold_6-int 6170 6269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16675739..16676775 /note="source:CACAO_M_E69585_F277_scaffold_9 1 1037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16676772..16677129 /note="source:CACAO_M_S_E121934_F7_scaffold_10 4507 4858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16677878..16680711 /note="source:CACAO_M_E22201_F289_scaffold_3 1 2834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16680834..16680921 /note="source:CACAO_M_E3626_F245_scaffold_1 2937 3025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16681402..16681543 /note="source:INTACT33_F7_scaffold_5-int 11231 11373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16681536..16682974 /note="source:CACAO_M_S_E54197_F7_scaffold_5 1498 2983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16682975..16683403 /note="source:CACAO_M_E69585_F277_scaffold_9 1023 1451" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16683404..16685373) /note="source:INTACT33_F7_scaffold_5-int 6574 8542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16683648..16686225 /note="source:INTACT18_F7_scaffold_4-int 382 2944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16686226..16693737) /note="source:CACAO_M_E69228_F89_scaffold_9 2123 9637" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16692273..16692783 /locus_tag="TCM_013741" /note="dbxref CacaoGD:Thecc1EG013741" mRNA 16692273..16692783 /locus_tag="TCM_013741" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039184t1" /inference="similar to AA sequence:frave:gene21083" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 16692415..16692762 /locus_tag="TCM_013741" /note="dbxref frave:gene21083; paralog of Thecc1EG039184t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21675.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AGW4" /translation="MKGVIRFASRGKLNPRYIGPFRIIERIGPVAYRLELPSELGRIH NVFHVSMLKKYVPDPSHILETPPIELQEDLKFEVQPVRILDRKDRVLRNKNIPMVKVL WKNARMEEMTWEV" mobile_element complement(16693738..16696689) /note="source:CACAO_M_E14839_F7_scaffold_3 1 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16696690..16698811 /note="source:CACAO_M_E304_F277_scaffold_1 881 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16698812..16698997) /note="source:CACAO_M_S_E5046_F335_scaffold_1 3300 3485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16699982..16703964 /note="source:INTACT412_F5_scaffold_3-int 1 3983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16707448..16708286 /note="source:scaffold_8_CACTA_0859 16516 17344" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16712203..16713600) /note="source:INTACT222_F33_scaffold_7-int 3731 5119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16714254..16714559 /note="source:INTACT591_F264_scaffold_1-int 5679 5972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16714418..16714650) /note="source:CACAO_M_E58324_F9_scaffold_9 2523 2788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16714651..16714952) /note="source:INTACT591_F264_scaffold_1-int 1203 1513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16714953..16718133) /note="source:CACAO_M_E34557_F14_scaffold_5 6774 9995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16718136..16722377) /note="source:CACAO_M_E42809_F5_scaffold_5 6510 10845" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16719329..16722278 /note="source:CACAO_M_E22219_F44_scaffold_3 1 2950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16722288..16723562 /note="source:CACAO_M_E58324_F9_scaffold_9 8940 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16723563..16726080 /note="source:CACAO_M_E4870_F14_scaffold_2 3176 5687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16726057..16726575) /note="source:CACAO_M_S_E15347_F33_scaffold_2 7993 8510" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16729956..16730274 /locus_tag="TCM_013745" /note="dbxref CacaoGD:Thecc1EG013745" mRNA 16729956..16730274 /locus_tag="TCM_013745" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400065776.10" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028107t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc4Loc4213t1_C2" CDS 16730059..16730220 /locus_tag="TCM_013745" /note="paralog of Thecc1EG028107t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21676.1" /translation="MLSSPSVSFGSKVLHSWGMWYLRRGYELIQRKLKQWKNGQGQHQ LQRLEALWV" mobile_element complement(16730937..16731095) /note="source:INTACT786_F333_scaffold_7-int 3047 3205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16731455..16732973) /note="source:CACAO_M_S_E15347_F33_scaffold_2 6735 8251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16733518..16733927) /note="source:CACAO_M_S_E15347_F33_scaffold_2 5800 6211" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16733921..16734563) /note="source:CACAO_M_E42503_F14_scaffold_5 3910 4552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16734559..16734649) /note="source:CACAO_M_E34557_F14_scaffold_5 8462 8552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16734654..16734685 /note="source:CACAO_M_E42503_F14_scaffold_5 6923 6954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16734683..16735364) /note="source:INTACT591_F264_scaffold_1-int 19743 20472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16735365..16736478) /note="source:CACAO_M_E58324_F9_scaffold_9 1436 2527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16736484..16739012 /note="source:CACAO_M_E23512_F28_scaffold_4 2527 5036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16746125..16746613 /note="source:INTACT26_F13_scaffold_9-int 3338 3837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16749194..16751251) /note="source:CACAO_M_S_E5210_F12_scaffold_1 10505 12573" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16751247..16753396) /note="source:CACAO_M_E58819_F24_scaffold_9 14103 16268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16753180..16753570 /note="source:CACAO_M_E13038_F22_scaffold_3 9863 10257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16753391..16753742) /note="source:CACAO_M_E58819_F24_scaffold_9 3007 3359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16753741..16757662) /note="source:CACAO_M_E9395_F12_scaffold_2 17944 21816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16757663..16758251) /note="source:INTACT212_F171_scaffold_10-int 6686 7274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16759045..16759300) /note="source:CACAO_M_E36219_F322_scaffold_5 1167 1422" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16759401..16760123) /note="source:CACAO_M_E36219_F322_scaffold_5 417 1143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16763002..16767235 /note="source:CACAO_M_E14227_F12_scaffold_3 8716 12985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16767181..16767257) /note="source:CACAO_M_E33933_F9_scaffold_4 5336 5408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16768177..16768296) /note="source:CACAO_M_E14347_F12_scaffold_3 16430 16519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16771676..16771739) /note="source:INTACT336_F12_scaffold_2-int 10122 10195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16771920..16771984) /note="source:INTACT336_F12_scaffold_2-int 10050 10115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16773316..16775836) /note="source:CACAO_M_E24592_F195_scaffold_4 19420 20687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16776287..16776341) /note="source:CACAO_M_E3326_F17_scaffold_1 14808 14864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16776320..16776434) /note="source:CACAO_M_E5899_F5_scaffold_2 22598 22710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16776334..16776584) /note="source:INTACT405F_F91_scaffold_4-int 7312 7611" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16776415..16776937 /note="source:CACAO_M_E3248_F5_scaffold_1 1829 2352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16776952..16777386 /note="source:CACAO_M_E3248_F5_scaffold_1 2328 2765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16777375..16778150 /note="source:CACAO_M_E3248_F5_scaffold_1 2879 3653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16778161..16778479 /note="source:CACAO_M_E3248_F5_scaffold_1 3528 3826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16778978..16781943 /note="source:CACAO_M_S_E101631_F270_scaffold_9 2907 5872" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16781216..16782044 /note="source:CACAO_M_S_E85473_F233_scaffold_7 4854 5667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16782046..16785018 /note="source:CACAO_M_S_E86337_F201_scaffold_7 1 3014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16784963..16785030) /note="source:CACAO_on_S_E58_scaffold_2 1929 1995" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(16785019..16785091) /note="source:INTACT518_F239_scaffold_2-int 3970 4041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16785060..16785104) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3200 3244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16785218..16785229 /note="source:CACAO_M_S_E84376_F22_scaffold_6 14570 14581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16785230..16785274 /note="source:scaffold_4_CACTA_0489 7090 7134" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16785275..16786019 /note="source:CACAO_M_S_E84376_F22_scaffold_6 14582 15361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16786099..16789312) /note="source:CACAO_M_S_E5046_F335_scaffold_1 17792 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16789155..16794369 /note="source:INTACT789_F335_scaffold_1-int 2969 8184" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16792451..16795759) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1 3404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16795760..16796305 /note="source:CACAO_M_S_E5046_F335_scaffold_1 17594 18135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16796334..16796571) /note="source:INTACT405F_F91_scaffold_4-int 7316 7600" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16796404..16796926) /note="source:scaffold_4_CACTA_0494 3346 3849" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16797790..16798700) /note="source:scaffold_4_CACTA_0494 1798 2745" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16798923..16799068 /note="source:INTACT537_F22_scaffold_2-int 8438 8590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16799425..16800245) /note="source:scaffold_9_CACTA_0927 15223 16035" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16800249..16801692) /note="source:scaffold_9_CACTA_0927 13878 15327" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16801692..16803056) /note="source:INTACT189_F49_scaffold_5-int 494 1840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16803056..16803448) /note="source:INTACT189_F49_scaffold_5-int 17863 18253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16803451..16806601) /note="source:scaffold_9_CACTA_0927 10754 13880" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16806601..16807114 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 6326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16807106..16810039 /note="source:CACAO_M_E10603_F306_scaffold_2 4808 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16808237..16815595) /note="source:CACAO_M_E58684_F78_scaffold_9 2370 9745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16815598..16823728) /note="source:INTACT363_F7_scaffold_9-int 1795 9921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16823739..16824480) /note="source:CACAO_M_S_E65679_F7_scaffold_5 1 742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16824481..16826937 /note="source:CACAO_M_E10603_F306_scaffold_2 5300 7770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16826937..16831466) /note="source:INTACT1327F_F381_scaffold_8-int 4217 8746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16831467..16831992) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5249 5776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16831982..16833557) /note="source:CACAO_M_S_E65716_F44_scaffold_5 8321 9901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16831993..16832142) /note="source:scaffold_5_CACTA_0591 4180 4813" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16833658..16834643) /note="source:INTACT1327F_F381_scaffold_8-int 10357 11329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16834643..16837779 /note="source:CACAO_M_E36294_F51_scaffold_5 7643 10744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16837780..16840952) /note="source:INTACT1327F_F381_scaffold_8-int 6069 9257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16840953..16841948 /note="source:INTACT597_F267_scaffold_2-int 11516 12516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16842178..16843282) /note="source:scaffold_9_CACTA_0927 5896 7000" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16843160..16843477) /note="source:CACAO_M_E33160_F143_scaffold_4 5413 5763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16843430..16845107) /note="source:scaffold_9_CACTA_0927 4276 5963" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16845936..16860328 /note="source:CACAO_M_S_E31737_F15_scaffold_3 1 14376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16861524..16861539) /note="source:CACAO_M_S_E17277_F85_scaffold_3 2270 2285" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16861540..16867451 /note="source:CACAO_M_E22265_F82_scaffold_3 1 5912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16868449..16874873 /note="source:CACAO_M_E22265_F82_scaffold_3 6570 12994" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16870079..16871680) /locus_tag="TCM_013758" /note="dbxref CacaoGD:Thecc1EG013758" mRNA complement(join(16870079..16871077,16871192..16871680)) /locus_tag="TCM_013758" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032616t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.71 coverage" CDS complement(join(16870836..16871077,16871192..16871333)) /locus_tag="TCM_013758" /note="paralog of Thecc1EG032616t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21677.1" /translation="MSRRGGSLDTSHSDSEGSLDSTVRSRWQSESSSPKSTDSDNISV SMRGCGINVRGQAEKDKEKVTVASKPLRKVSGVRHFPPGCGRNAAPVSDEEYRRIQQA WIEEQRKKKSQEEENPKEDLQEDSE" mobile_element 16879221..16880860 /note="source:scaffold_5_CACTA_0591 10915 12532" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16882941..16883061) /note="source:scaffold_5_CACTA_0591 6352 6474" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16883402..16884002 /note="source:CACAO_M_S_E145698_F277_scaffold_11 14741 15333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16884800..16886111 /note="source:scaffold_5_CACTA_0591 12524 13825" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16889268..16889310) /note="source:CACAO_M_E52239_F256_scaffold_7 20808 21135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16889268..16889304 /note="source:INTACT239_F181_scaffold_4-int 4751 4792" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16889311..16889574 /note="source:scaffold_4_CACTA_0493 4174 4437" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16895152..16896574 /note="source:CACAO_M_E52239_F256_scaffold_7 19810 21226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16901476..16901832 /note="source:scaffold_8_CACTA_0859 16689 17031" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16901809..16904500) /note="source:CACAO_M_E52239_F256_scaffold_7 19813 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16904501..16905020 /note="source:scaffold_8_CACTA_0859 17005 17522" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16911416..16911787 /note="source:CACAO_M_S_E121934_F7_scaffold_10 4506 4866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16913185..16915986 /note="source:CACAO_M_S_E13327_F78_scaffold_2 1 2852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16917002..16917107 /note="source:CACAO_M_E5000_F96_scaffold_2 7634 7736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16923301..16923884) /note="source:CACAO_M_E47740_F12_scaffold_6 6142 6720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16925374..16925717 /note="source:CACAO_M_S_E121934_F7_scaffold_10 4507 4863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16926375..16926499 /note="source:INTACT33_F7_scaffold_5-int 10346 10483" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16927388..16927529 /note="source:INTACT33_F7_scaffold_5-int 11231 11373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16927522..16928965 /note="source:CACAO_M_S_E54060_F7_scaffold_5 1512 2999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16932105..16933755 /note="source:CACAO_M_S_E7551_F7_scaffold_2 1 1651" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16933414..16941380) /locus_tag="TCM_013764" /note="dbxref CacaoGD:Thecc1EG013764" mRNA complement(join(16933414..16933678,16934090..16934097, 16934888..16934972,16936539..16937897,16940929..16941380)) /locus_tag="TCM_013764" /product="DNA/RNA polymerases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026518.19" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018243t1" /inference="similar to AA sequence:Phytozome:Glyma04g32860.1" /note="quality class is strong-expresste, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc2Loc4793t1" mobile_element 16933742..16933847 /note="source:CACAO_M_E52012_F318_scaffold_7 6970 7081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16933753..16935716 /note="source:INTACT649F_F368_scaffold_5-int 4138 6101" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16936104..16937902) /note="source:CACAO_M_E45504_F98_scaffold_6 6501 8299" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(16936541..16937887) /locus_tag="TCM_013764" /note="paralog of Thecc1EG018243t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY21678.1" /db_xref="Phytozome:Glyma04g32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BR83" /translation="MFTKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGAT KMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAM DFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPIS IVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLG VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDA TEKIHMIRQRMLTAQSRQKSYADNRRRYLEFQVGDHVFLKVSPTKGIMRFGKKGKLSP RYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDD LTYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSEEVTWEAEDEMRTKHPHLFDM" mobile_element 16940829..16941790 /note="source:INTACT649F_F368_scaffold_5-int 5901 6864" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16941779..16943137 /note="source:CACAO_M_S_E99989_F7_scaffold_9 1632 2988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16944004..16944112 /note="source:INTACT789_F335_scaffold_1-int 7038 7130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16944285..16944457 /note="source:CACAO_M_E72142_F322_scaffold_10 7875 8085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16945756..16946101) /note="source:CACAO_M_S_E121934_F7_scaffold_10 4501 4866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16954207..16954285) /note="source:CACAO_M_E58601_F7_scaffold_9 4193 4272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16959509..16961957) /note="source:INTACT789_F335_scaffold_1-int 7250 9700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16961943..16971870 /note="source:CACAO_M_S_E31774_F7_scaffold_3 1 9928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16971871..16972099 /note="source:CACAO_M_S_E5046_F335_scaffold_1 20636 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16974638..16974747) /note="source:CACAO_M_S_E17777_F2_scaffold_3 6881 6983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16974733..16975068) /note="source:CACAO_M_S_E17777_F2_scaffold_3 3635 3977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16978978..16979095) /note="source:CACAO_M_E13038_F22_scaffold_3 79 201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16979215..16980820) /note="source:CACAO_M_E58324_F9_scaffold_9 22479 24071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16980815..16981377 /note="source:CACAO_M_E3109_F15_scaffold_1 660 1218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16982779..16983317) /note="source:INTACT51F_F15_scaffold_1-int 7637 8175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16983908..16984536) /note="source:INTACT51F_F15_scaffold_1-int 6907 7535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16989387..16989760 /note="source:CACAO_M_E3109_F15_scaffold_1 966 1339" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16990056..16991517) /note="source:CACAO_M_E4554_F15_scaffold_2 7604 9063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16991518..16992349) /note="source:CACAO_M_S_E85177_F5_scaffold_7 17612 18459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16992877..16992960 /note="source:INTACT189_F49_scaffold_5-int 17813 17903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16996587..16999545 /note="source:CACAO_M_E22302_F143_scaffold_3 1 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17000090..17000459 /note="source:CACAO_M_E58819_F24_scaffold_9 2991 3359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17000277..17000854) /note="source:CACAO_M_E13038_F22_scaffold_3 9681 10257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17000956..17001463) /note="source:INTACT669_F295_scaffold_3-int 7938 8442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17001031..17002845 /note="source:CACAO_M_E58819_F24_scaffold_9 15190 16268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17002912..17003084) /note="source:CACAO_M_S_E4911_F76_scaffold_1 108 297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17003811..17005236) /note="source:CACAO_M_S_E4482_F7_scaffold_1 1567 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17005231..17006975 /note="source:INTACT548_F247_scaffold_9-int 5043 6813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17006982..17007376) /note="source:CACAO_M_E86052_F15_scaffold_12 5758 6152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17008770..17009145) /note="source:INTACT300_F7_scaffold_5-int 3971 4345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17009436..17009956) /note="source:CACAO_M_E86052_F15_scaffold_12 4119 4638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17009960..17015571 /note="source:INTACT548_F247_scaffold_9-int 1765 7370" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17014593..17033123 /locus_tag="TCM_013773" /note="dbxref CacaoGD:Thecc1EG013773" mRNA join(17014593..17015192,17023014..17023719, 17024434..17024649,17025669..17025863,17025941..17026281, 17026454..17026685,17026914..17028604,17029229..17029447, 17029546..17029683,17030667..17030901,17030985..17031044, 17031905..17031976,17032073..17032214,17032467..17032848) /locus_tag="TCM_013773" /product="Zinc ion binding, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014052" /inference="similar to AA sequence:ricco:30147.m014052" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1407t6" mobile_element 17015577..17018502 /note="source:CACAO_M_E22308_F86_scaffold_3 1 2926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17018504..17019085 /note="source:INTACT669_F295_scaffold_3-int 8836 9443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17019085..17020660 /note="source:CACAO_M_S_E89319_F7_scaffold_8 1410 2996" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(17023180..17023719,17024434..17024649, 17025669..17025863,17025941..17026281,17026454..17026685, 17026914..17028604,17029229..17029447,17029546..17029683, 17030667..17030901,17030985..17031047,17032191..17032490) /locus_tag="TCM_013773" /product="Zinc ion binding, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014052" /inference="similar to AA sequence:ricco:30147.m014052" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc720t13_C1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc720t13_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1407t6" CDS join(17023417..17023719,17024434..17024649, 17025669..17025863,17025941..17026281,17026454..17026685, 17026914..17028604,17029229..17029447,17029546..17029683, 17030667..17030901,17030985..17031047,17032191..17032253) /locus_tag="TCM_013773" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014052" /codon_start=1 /product="Zinc ion binding, putative isoform 2" /protein_id="EOY21680.1" /db_xref="TAIR:AT1G74770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HVS0" /translation="MGGGRAPKDPPDKEEERPSPSSSPWLPPSLAGVRLADAPILLLV YFHEAIRTELSELRRVAVAAAADEKSESHSREFAVELSGRFEFLKLFCKYHCAAEDEV VFLALDAHVKNVACTYSLEHESIDDLFDSVFCCLNVFDGSKSTSKASQELVFCIGTIQ SSICKHMLKEEKQVFPLLVKQFSSQEQASLVWQFVGSIPIILLEDFLPWMISFFHPDV QEEITNCIKDVVPKEKSLQEVVVSWLGKKHQTTFGFHTELAKGVRPLDGPATIKGKFN FNFITRPLGWKKVYCFQTSVGNNPVDGLLLWHSAIQKDLKEILLELHQIKISSCFQNI DFVVHQLKFLVDIIIFYSNALEKFFYPVLVDVSNSQLSLPTQHLYIACHIEHLQYLLH YNDQKGVATNEFAEKLFQKLESFVMNVDKQFGLQEKEVFSIISKNCSQEMQQQLLCMS LHVLPLGLLKLVITWFAAHLSEDESRSILRNINQGSSLVNKSFASLLLEWFHIGYSGK TSVESFRRDLEKMFSSRCSFLPEPIKEDAESSCLLSDMLLCKGPKSELVKPVFVNKEK KGFSFSSADSHGIKQFDTSYCSGINLHIFFPKTIRASYSFSKFPGEKSCVDSAVTEPL PMDLIFFFHRAQKKDLDYLVLGSAQLAENVGFLMEFRQHFNLIQLLYQIHSDAEDEIA FPALEAKGKLQNISHSYTIDHKLEVENFSKISLILDEMYELHITPSNGESKTLDRVVR HQQLCVNLHDACKSMHKLLSDHVHREEVELWPLFRECFSLEEQEKIIRSMLGRTGAEI LQDMIPWLMASLTPDEQQSVMSLWHKATRNTMFDEWLEEWWEGHKIAKAAEESTTPSW TTDPLEIISTYLPKVLDEQEAFCDNFLSANSIGADIERLGMSNLDHKAKAFKGDEKFS ECSGLFSRSNDKKSNEVADWMNRTNKPCQNFQVTENSGQCKHVLTMSQEDLEAAIRRV FSDTSFDPERKAHVMQNLLMSRWILKQQVYNLEVNKSHNGGEFPGQHPSYRDPRKLAL GCKHYKRNCKLFAACCNQLYTCIRCHDEVADHSLDRKSVTKMMCMKCLIIQPIGSMCS TASCNDLSMGKYYCRICKLFDDERQIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRS LSLHICREKSFEDNCPICHEDIFTSSAPVKALPCGHLMHSICFQDYTCTHYTCPICSK SLGDMQVDCFSRYKKVSLIKWTQLLSY" CDS join(17023417..17023719,17024434..17024649, 17025669..17025863,17025941..17026281,17026454..17026685, 17026914..17028604,17029229..17029447,17029546..17029683, 17030667..17030901,17030985..17031044,17031905..17031976, 17032073..17032174) /locus_tag="TCM_013773" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014052" /codon_start=1 /product="Zinc ion binding, putative isoform 1" /protein_id="EOY21679.1" /db_xref="TAIR:AT1G74770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HVS0" /translation="MGGGRAPKDPPDKEEERPSPSSSPWLPPSLAGVRLADAPILLLV YFHEAIRTELSELRRVAVAAAADEKSESHSREFAVELSGRFEFLKLFCKYHCAAEDEV VFLALDAHVKNVACTYSLEHESIDDLFDSVFCCLNVFDGSKSTSKASQELVFCIGTIQ SSICKHMLKEEKQVFPLLVKQFSSQEQASLVWQFVGSIPIILLEDFLPWMISFFHPDV QEEITNCIKDVVPKEKSLQEVVVSWLGKKHQTTFGFHTELAKGVRPLDGPATIKGKFN FNFITRPLGWKKVYCFQTSVGNNPVDGLLLWHSAIQKDLKEILLELHQIKISSCFQNI DFVVHQLKFLVDIIIFYSNALEKFFYPVLVDVSNSQLSLPTQHLYIACHIEHLQYLLH YNDQKGVATNEFAEKLFQKLESFVMNVDKQFGLQEKEVFSIISKNCSQEMQQQLLCMS LHVLPLGLLKLVITWFAAHLSEDESRSILRNINQGSSLVNKSFASLLLEWFHIGYSGK TSVESFRRDLEKMFSSRCSFLPEPIKEDAESSCLLSDMLLCKGPKSELVKPVFVNKEK KGFSFSSADSHGIKQFDTSYCSGINLHIFFPKTIRASYSFSKFPGEKSCVDSAVTEPL PMDLIFFFHRAQKKDLDYLVLGSAQLAENVGFLMEFRQHFNLIQLLYQIHSDAEDEIA FPALEAKGKLQNISHSYTIDHKLEVENFSKISLILDEMYELHITPSNGESKTLDRVVR HQQLCVNLHDACKSMHKLLSDHVHREEVELWPLFRECFSLEEQEKIIRSMLGRTGAEI LQDMIPWLMASLTPDEQQSVMSLWHKATRNTMFDEWLEEWWEGHKIAKAAEESTTPSW TTDPLEIISTYLPKVLDEQEAFCDNFLSANSIGADIERLGMSNLDHKAKAFKGDEKFS ECSGLFSRSNDKKSNEVADWMNRTNKPCQNFQVTENSGQCKHVLTMSQEDLEAAIRRV FSDTSFDPERKAHVMQNLLMSRWILKQQVYNLEVNKSHNGGEFPGQHPSYRDPRKLAL GCKHYKRNCKLFAACCNQLYTCIRCHDEVADHSLDRKSVTKMMCMKCLIIQPIGSMCS TASCNDLSMGKYYCRICKLFDDERQIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRS LSLHICREKSFEDNCPICHEDIFTSSAPVKALPCGHLMHSICFQDYTCTHYTCPICSK SLGDMQVYFRMLDALLAEEKIPDEYHGRTQVILCNDCEKKGTAPFHWLYHKCSNCGSY NTRVL" mRNA join(17024894..17025863,17025941..17026281, 17026454..17026685,17026914..17028604,17029229..17029447, 17029546..17029683,17030667..17030901,17030985..17031047, 17032191..17032214,17032467..>17032490) /locus_tag="TCM_013773" /product="Zinc ion binding, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014052" /inference="similar to AA sequence:ricco:30147.m014052" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc720t11_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1407t6; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc720t13_C1" CDS join(17025654..17025863,17025941..17026281, 17026454..17026685,17026914..17028604,17029229..17029447, 17029546..17029683,17030667..17030901,17030985..17031047, 17032191..17032214,17032467..>17032490) /locus_tag="TCM_013773" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014052" /codon_start=1 /product="Zinc ion binding, putative isoform 3" /protein_id="EOY21681.1" /db_xref="TAIR:AT1G74770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HVS0" /translation="MHCLQVFPLLVKQFSSQEQASLVWQFVGSIPIILLEDFLPWMIS FFHPDVQEEITNCIKDVVPKEKSLQEVVVSWLGKKHQTTFGFHTELAKGVRPLDGPAT IKGKFNFNFITRPLGWKKVYCFQTSVGNNPVDGLLLWHSAIQKDLKEILLELHQIKIS SCFQNIDFVVHQLKFLVDIIIFYSNALEKFFYPVLVDVSNSQLSLPTQHLYIACHIEH LQYLLHYNDQKGVATNEFAEKLFQKLESFVMNVDKQFGLQEKEVFSIISKNCSQEMQQ QLLCMSLHVLPLGLLKLVITWFAAHLSEDESRSILRNINQGSSLVNKSFASLLLEWFH IGYSGKTSVESFRRDLEKMFSSRCSFLPEPIKEDAESSCLLSDMLLCKGPKSELVKPV FVNKEKKGFSFSSADSHGIKQFDTSYCSGINLHIFFPKTIRASYSFSKFPGEKSCVDS AVTEPLPMDLIFFFHRAQKKDLDYLVLGSAQLAENVGFLMEFRQHFNLIQLLYQIHSD AEDEIAFPALEAKGKLQNISHSYTIDHKLEVENFSKISLILDEMYELHITPSNGESKT LDRVVRHQQLCVNLHDACKSMHKLLSDHVHREEVELWPLFRECFSLEEQEKIIRSMLG RTGAEILQDMIPWLMASLTPDEQQSVMSLWHKATRNTMFDEWLEEWWEGHKIAKAAEE STTPSWTTDPLEIISTYLPKVLDEQEAFCDNFLSANSIGADIERLGMSNLDHKAKAFK GDEKFSECSGLFSRSNDKKSNEVADWMNRTNKPCQNFQVTENSGQCKHVLTMSQEDLE AAIRRVFSDTSFDPERKAHVMQNLLMSRWILKQQVYNLEVNKSHNGGEFPGQHPSYRD PRKLALGCKHYKRNCKLFAACCNQLYTCIRCHDEVADHSLDRKSVTKMMCMKCLIIQP IGSMCSTASCNDLSMGKYYCRICKLFDDERQIYHCPYCNLCRVGKGLGIDYFHCMNCN ACMSRSLSLHICREKSFEDNCPICHEDIFTSSAPVKALPCGHLMHSICFQDYTCTHYT CPICSKSLGDMQVDCFSRYKKVVWFDGEE" mRNA join(<17026076..17026281,17026454..17026685, 17026914..17028604,17029229..17029447,17029546..17029683, 17030667..17031044,17031905..17031976,17032073..17032214, 17032467..17033123) /locus_tag="TCM_013773" /product="Zinc ion binding, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m014052" /inference="similar to AA sequence:ricco:30147.m014052" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc968t6; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc977t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1407t6" CDS join(<17026076..17026281,17026454..17026685, 17026914..17028604,17029229..17029447,17029546..17029683, 17030667..17030934) /locus_tag="TCM_013773" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m014052" /codon_start=1 /product="Zinc ion binding, putative isoform 4" /protein_id="EOY21682.1" /db_xref="TAIR:AT1G74770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HVS0" /translation="LGWKKVYCFQTSVGNNPVDGLLLWHSAIQKDLKEILLELHQIKI SSCFQNIDFVVHQLKFLVDIIIFYSNALEKFFYPVLVDVSNSQLSLPTQHLYIACHIE HLQYLLHYNDQKGVATNEFAEKLFQKLESFVMNVDKQFGLQEKEVFSIISKNCSQEMQ QQLLCMSLHVLPLGLLKLVITWFAAHLSEDESRSILRNINQGSSLVNKSFASLLLEWF HIGYSGKTSVESFRRDLEKMFSSRCSFLPEPIKEDAESSCLLSDMLLCKGPKSELVKP VFVNKEKKGFSFSSADSHGIKQFDTSYCSGINLHIFFPKTIRASYSFSKFPGEKSCVD SAVTEPLPMDLIFFFHRAQKKDLDYLVLGSAQLAENVGFLMEFRQHFNLIQLLYQIHS DAEDEIAFPALEAKGKLQNISHSYTIDHKLEVENFSKISLILDEMYELHITPSNGESK TLDRVVRHQQLCVNLHDACKSMHKLLSDHVHREEVELWPLFRECFSLEEQEKIIRSML GRTGAEILQDMIPWLMASLTPDEQQSVMSLWHKATRNTMFDEWLEEWWEGHKIAKAAE ESTTPSWTTDPLEIISTYLPKVLDEQEAFCDNFLSANSIGADIERLGMSNLDHKAKAF KGDEKFSECSGLFSRSNDKKSNEVADWMNRTNKPCQNFQVTENSGQCKHVLTMSQEDL EAAIRRVFSDTSFDPERKAHVMQNLLMSRWILKQQVYNLEVNKSHNGGEFPGQHPSYR DPRKLALGCKHYKRNCKLFAACCNQLYTCIRCHDEVADHSLDRKSVTKMMCMKCLIIQ PIGSMCSTASCNDLSMGKYYCRICKLFDDERQIYHCPYCNLCRVGKGLGIDYFHCMNC NACMSRSLSLHICREKSFEDNCPICHEDIFTSSAPVKALPCGHLMHSICFQVLLKLPL FPL" gene complement(17032187..17042950) /locus_tag="TCM_013775" /note="dbxref CacaoGD:Thecc1EG013775" mRNA complement(join(17032187..17032216,17032469..17033119, 17033135..17034508,17034591..17034677,17034842..17034975, 17035062..17035209,17035296..17035571,17035699..17035914, 17036031..17036227,17037016..17037129,17038336..17038545, 17038630..17038753,17038897..17039179,17039315..17039367, 17039457..17039648,17039729..17039857,17039949..17042950)) /locus_tag="TCM_013775" /product="Ubiquitin carboxyl-terminal hydrolase-related protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014055" /inference="similar to AA sequence:Phytozome:GSVIVT01008079001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc977t10; alternateUTRof:Thecc1EG013775t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc968t5" mRNA complement(join(17032187..17032216,17032469..17034508, 17034591..17034677,17034842..17034975,17035062..17035209, 17035296..17035571,17035699..17035914,17036031..17036227, 17037016..17037129,17038336..17038545,17038630..17038753, 17038897..17039179,17039315..17039367,17039457..17039648, 17039729..17039857,17039949..17042950)) /locus_tag="TCM_013775" /product="Ubiquitin carboxyl-terminal hydrolase-related protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014055" /inference="similar to AA sequence:Phytozome:GSVIVT01008079001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc977t1; alternateUTRof:Thecc1EG013775t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc968t5" mRNA complement(join(17033130..17034508,17034591..17034677, 17034842..17034975,17035062..17035196,17035296..17035571, 17035699..17035914,17036031..17036227,17037016..17037129, 17038336..17038545,17038630..17038753,17038897..17039179, 17039315..17039367,17039457..17039648,17039729..17039857, 17039949..17042923)) /locus_tag="TCM_013775" /product="Ubiquitin carboxyl-terminal hydrolase-related protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m014055" /inference="similar to AA sequence:Phytozome:GSVIVT01008079001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc968t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc968t5" mRNA complement(join(17033130..17034508,17034591..17034677, 17034842..17034975,17035062..17035209,17035296..17035571, 17035699..17035914,17036031..17036227,17037016..17037129, 17038336..17038545,17038630..17038753,17038897..17039179, 17039315..17039367,17039457..17039648,17039729..17039857, 17039949..17042923)) /locus_tag="TCM_013775" /product="Ubiquitin carboxyl-terminal hydrolase-related protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014055" /inference="similar to AA sequence:Phytozome:GSVIVT01008079001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc968t5; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc968t5" mRNA complement(join(17033130..17034508,17034591..17034677, 17034842..17035209,17035296..17035571,17035699..17035914, 17036031..17036227,17037016..17037129,17038336..17038545, 17038630..17038753,17038897..17039179,17039315..17039367, 17039457..17039648,17039729..17039857,17039949..17042923)) /locus_tag="TCM_013775" /product="Ubiquitin carboxyl-terminal hydrolase-related protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:30147.m014055" /inference="similar to AA sequence:Phytozome:GSVIVT01008079001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc968t8; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc968t5" CDS complement(join(17034422..17034508,17034591..17034677, 17034842..17034975,17035062..17035209,17035296..17035571, 17035699..17035914,17036031..17036227,17037016..17037129, 17038336..17038545,17038630..17038753,17038897..17039179, 17039315..17039367,17039457..17039648,17039729..17039857, 17039949..17042585)) /locus_tag="TCM_013775" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase-related protein isoform 1" /protein_id="EOY21683.1" /db_xref="Phytozome:GSVIVT01008079001" /db_xref="TAIR:AT3G47890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTB6" /translation="MGHKKKNAAPRSKRPSSQPPPVAATTVVDVINDSAERELTGNNA KIEVAAVAVESDASSSSSYAAVKIECERALTALRRGNHTKALRLMKESCTCHENSAHA ALIHRVQGTVCVKVASIIDDPNAKHRHLKNAIDSAKKAVELSPNSIEFSHFYANLLYE AANDGKEFEEVVQECERALAIENPVDPAKESLQEESQQKISTAEARILHVQSELRSLI QKSNIASISTWMKNLGNGEEKFRLIPIRRVTEDPMEVRLVQTRRPNEIKKATKTPEER RKEIEVRVAAARLLQQQKSEAASSALLQSDGERNGLDLTSGSGQRGGVERRRKIGSTA ERKDWVRSFWNSMSVDSKKDLLRIRVSDLKEYFGLLKDGLASEVLSEALAFAELNKTW KFWVCCRCSEKFAVSESHMQHVVQEHMGNLMPKMQTVLPQSVDSEWIEMLLNCSWNPL DISAAVKMIGNESKCRDSEFSKDFYSDNHNEECDDCFKDAWSSSPEKEHLGDQYNCTS VEGKNCDKVSSIECKECDGNQGSVAYPHVDCWPTVDDAERAKLLERIHATFELLIRHK YLAASHLNKVIQFTMDELQSLVSGSQLLNHGVDQTPMCICFLGAMQLRKILKFLQDLS HSCGLTRYSEKTAPVDDVNRASQILEVKEKIVLNGDASCLLLDERLLPDVAIQEAALA NANGSNNYGFVQDADALLSWIFAGPSSGDQLASWIRKKEEKTQQGLEILQMLEKEFYH LQSLCEKKCDHISYEEALQAVEDLCLEEGKKRETATEFVYRSYESVLRKRREELIESE NDVMFLSSRFELDAISNVLKEAEALNVNQFGYEDTYAGVTSQLCDLESGEGDDWRTKD YLHQVDTCIEVAIQRQKEQLSLELSKIDARIMQNVTGMQQLELKLEPASAHDYRLIML PLVKSYLRAHLEDLAEKDATEKSDAAREAFLAELACDSKKGSRGGSDNSRHAQEKSKD KKKNKELRKSKDSKASGANEQHMLNDETAEQVSSAVASDGDHLDSEVVSVNSDDLKQQ EEEFRRKIELEAEERKLEETLEYQRRIENEAKQKHLAEQHKKTNQVFEEIAANGLRDA YWEASDLDIQEHLAISNRVTDNLDSIPLSTANGSAVAVTSNTSGTYAKFKQGLSNGAV PEDALFPGDRRAGRRGRRHKSSNKFLDGKYQVIPSEKESIQVGSSHGNVEEQVRYVDG FPMDSVAPISVEGGTKTLRQLQAEEDDEERFQADLKQAVRQSLDTYQAQQKMPLGSSL RTAPRVPLQVNNHGVSPNEVSSENLNETDVLGTGLQNEVGEYNCFLNVIIQSLWHLRR FRDEFLRRSTSDHVHVGDPCVVCALYEIFSALNISSTDARREPVAPTSLRVALSNLYP DSNFFQEAQMNDASEVLAVIFDCLHRSFTSGSSVSNADSADSNCTGSWDCANSACMVH SLFGMDIFERMNCYKCGVESRRLKYTSFFHNINASALRTMKVLCAESSFDELLNLVER NHQLACDPEAGGCRRLNCIHHILSNPPHVFTTVLGWQNTSECADDIAATLAALNNEID ISVLYRGLDPKNKHHLVSVVCYYGQHYHCFAYSHDHERWIKYDDKTVKVIGGWADVVK MCEQGRLQPQVLFFEAVN" CDS complement(join(17034422..17034508,17034591..17034677, 17034842..17034975,17035062..17035209,17035296..17035571, 17035699..17035914,17036031..17036227,17037016..17037129, 17038336..17038545,17038630..17038753,17038897..17039179, 17039315..17039367,17039457..17039648,17039729..17039857, 17039949..17042585)) /locus_tag="TCM_013775" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase-related protein isoform 1" /protein_id="EOY21684.1" /db_xref="Phytozome:GSVIVT01008079001" /db_xref="TAIR:AT3G47890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTB6" /translation="MGHKKKNAAPRSKRPSSQPPPVAATTVVDVINDSAERELTGNNA KIEVAAVAVESDASSSSSYAAVKIECERALTALRRGNHTKALRLMKESCTCHENSAHA ALIHRVQGTVCVKVASIIDDPNAKHRHLKNAIDSAKKAVELSPNSIEFSHFYANLLYE AANDGKEFEEVVQECERALAIENPVDPAKESLQEESQQKISTAEARILHVQSELRSLI QKSNIASISTWMKNLGNGEEKFRLIPIRRVTEDPMEVRLVQTRRPNEIKKATKTPEER RKEIEVRVAAARLLQQQKSEAASSALLQSDGERNGLDLTSGSGQRGGVERRRKIGSTA ERKDWVRSFWNSMSVDSKKDLLRIRVSDLKEYFGLLKDGLASEVLSEALAFAELNKTW KFWVCCRCSEKFAVSESHMQHVVQEHMGNLMPKMQTVLPQSVDSEWIEMLLNCSWNPL DISAAVKMIGNESKCRDSEFSKDFYSDNHNEECDDCFKDAWSSSPEKEHLGDQYNCTS VEGKNCDKVSSIECKECDGNQGSVAYPHVDCWPTVDDAERAKLLERIHATFELLIRHK YLAASHLNKVIQFTMDELQSLVSGSQLLNHGVDQTPMCICFLGAMQLRKILKFLQDLS HSCGLTRYSEKTAPVDDVNRASQILEVKEKIVLNGDASCLLLDERLLPDVAIQEAALA NANGSNNYGFVQDADALLSWIFAGPSSGDQLASWIRKKEEKTQQGLEILQMLEKEFYH LQSLCEKKCDHISYEEALQAVEDLCLEEGKKRETATEFVYRSYESVLRKRREELIESE NDVMFLSSRFELDAISNVLKEAEALNVNQFGYEDTYAGVTSQLCDLESGEGDDWRTKD YLHQVDTCIEVAIQRQKEQLSLELSKIDARIMQNVTGMQQLELKLEPASAHDYRLIML PLVKSYLRAHLEDLAEKDATEKSDAAREAFLAELACDSKKGSRGGSDNSRHAQEKSKD KKKNKELRKSKDSKASGANEQHMLNDETAEQVSSAVASDGDHLDSEVVSVNSDDLKQQ EEEFRRKIELEAEERKLEETLEYQRRIENEAKQKHLAEQHKKTNQVFEEIAANGLRDA YWEASDLDIQEHLAISNRVTDNLDSIPLSTANGSAVAVTSNTSGTYAKFKQGLSNGAV PEDALFPGDRRAGRRGRRHKSSNKFLDGKYQVIPSEKESIQVGSSHGNVEEQVRYVDG FPMDSVAPISVEGGTKTLRQLQAEEDDEERFQADLKQAVRQSLDTYQAQQKMPLGSSL RTAPRVPLQVNNHGVSPNEVSSENLNETDVLGTGLQNEVGEYNCFLNVIIQSLWHLRR FRDEFLRRSTSDHVHVGDPCVVCALYEIFSALNISSTDARREPVAPTSLRVALSNLYP DSNFFQEAQMNDASEVLAVIFDCLHRSFTSGSSVSNADSADSNCTGSWDCANSACMVH SLFGMDIFERMNCYKCGVESRRLKYTSFFHNINASALRTMKVLCAESSFDELLNLVER NHQLACDPEAGGCRRLNCIHHILSNPPHVFTTVLGWQNTSECADDIAATLAALNNEID ISVLYRGLDPKNKHHLVSVVCYYGQHYHCFAYSHDHERWIKYDDKTVKVIGGWADVVK MCEQGRLQPQVLFFEAVN" CDS complement(join(17034422..17034508,17034591..17034677, 17034842..17034975,17035062..17035209,17035296..17035571, 17035699..17035914,17036031..17036227,17037016..17037129, 17038336..17038545,17038630..17038753,17038897..17039179, 17039315..17039367,17039457..17039648,17039729..17039857, 17039949..17042585)) /locus_tag="TCM_013775" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase-related protein isoform 1" /protein_id="EOY21685.1" /db_xref="Phytozome:GSVIVT01008079001" /db_xref="TAIR:AT3G47890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTB6" /translation="MGHKKKNAAPRSKRPSSQPPPVAATTVVDVINDSAERELTGNNA KIEVAAVAVESDASSSSSYAAVKIECERALTALRRGNHTKALRLMKESCTCHENSAHA ALIHRVQGTVCVKVASIIDDPNAKHRHLKNAIDSAKKAVELSPNSIEFSHFYANLLYE AANDGKEFEEVVQECERALAIENPVDPAKESLQEESQQKISTAEARILHVQSELRSLI QKSNIASISTWMKNLGNGEEKFRLIPIRRVTEDPMEVRLVQTRRPNEIKKATKTPEER RKEIEVRVAAARLLQQQKSEAASSALLQSDGERNGLDLTSGSGQRGGVERRRKIGSTA ERKDWVRSFWNSMSVDSKKDLLRIRVSDLKEYFGLLKDGLASEVLSEALAFAELNKTW KFWVCCRCSEKFAVSESHMQHVVQEHMGNLMPKMQTVLPQSVDSEWIEMLLNCSWNPL DISAAVKMIGNESKCRDSEFSKDFYSDNHNEECDDCFKDAWSSSPEKEHLGDQYNCTS VEGKNCDKVSSIECKECDGNQGSVAYPHVDCWPTVDDAERAKLLERIHATFELLIRHK YLAASHLNKVIQFTMDELQSLVSGSQLLNHGVDQTPMCICFLGAMQLRKILKFLQDLS HSCGLTRYSEKTAPVDDVNRASQILEVKEKIVLNGDASCLLLDERLLPDVAIQEAALA NANGSNNYGFVQDADALLSWIFAGPSSGDQLASWIRKKEEKTQQGLEILQMLEKEFYH LQSLCEKKCDHISYEEALQAVEDLCLEEGKKRETATEFVYRSYESVLRKRREELIESE NDVMFLSSRFELDAISNVLKEAEALNVNQFGYEDTYAGVTSQLCDLESGEGDDWRTKD YLHQVDTCIEVAIQRQKEQLSLELSKIDARIMQNVTGMQQLELKLEPASAHDYRLIML PLVKSYLRAHLEDLAEKDATEKSDAAREAFLAELACDSKKGSRGGSDNSRHAQEKSKD KKKNKELRKSKDSKASGANEQHMLNDETAEQVSSAVASDGDHLDSEVVSVNSDDLKQQ EEEFRRKIELEAEERKLEETLEYQRRIENEAKQKHLAEQHKKTNQVFEEIAANGLRDA YWEASDLDIQEHLAISNRVTDNLDSIPLSTANGSAVAVTSNTSGTYAKFKQGLSNGAV PEDALFPGDRRAGRRGRRHKSSNKFLDGKYQVIPSEKESIQVGSSHGNVEEQVRYVDG FPMDSVAPISVEGGTKTLRQLQAEEDDEERFQADLKQAVRQSLDTYQAQQKMPLGSSL RTAPRVPLQVNNHGVSPNEVSSENLNETDVLGTGLQNEVGEYNCFLNVIIQSLWHLRR FRDEFLRRSTSDHVHVGDPCVVCALYEIFSALNISSTDARREPVAPTSLRVALSNLYP DSNFFQEAQMNDASEVLAVIFDCLHRSFTSGSSVSNADSADSNCTGSWDCANSACMVH SLFGMDIFERMNCYKCGVESRRLKYTSFFHNINASALRTMKVLCAESSFDELLNLVER NHQLACDPEAGGCRRLNCIHHILSNPPHVFTTVLGWQNTSECADDIAATLAALNNEID ISVLYRGLDPKNKHHLVSVVCYYGQHYHCFAYSHDHERWIKYDDKTVKVIGGWADVVK MCEQGRLQPQVLFFEAVN" CDS complement(join(17035051..17035209,17035296..17035571, 17035699..17035914,17036031..17036227,17037016..17037129, 17038336..17038545,17038630..17038753,17038897..17039179, 17039315..17039367,17039457..17039648,17039729..17039857, 17039949..17042585)) /locus_tag="TCM_013775" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase-related protein isoform 5" /protein_id="EOY21687.1" /db_xref="Phytozome:GSVIVT01008079001" /db_xref="TAIR:AT3G47890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTB6" /translation="MGHKKKNAAPRSKRPSSQPPPVAATTVVDVINDSAERELTGNNA KIEVAAVAVESDASSSSSYAAVKIECERALTALRRGNHTKALRLMKESCTCHENSAHA ALIHRVQGTVCVKVASIIDDPNAKHRHLKNAIDSAKKAVELSPNSIEFSHFYANLLYE AANDGKEFEEVVQECERALAIENPVDPAKESLQEESQQKISTAEARILHVQSELRSLI QKSNIASISTWMKNLGNGEEKFRLIPIRRVTEDPMEVRLVQTRRPNEIKKATKTPEER RKEIEVRVAAARLLQQQKSEAASSALLQSDGERNGLDLTSGSGQRGGVERRRKIGSTA ERKDWVRSFWNSMSVDSKKDLLRIRVSDLKEYFGLLKDGLASEVLSEALAFAELNKTW KFWVCCRCSEKFAVSESHMQHVVQEHMGNLMPKMQTVLPQSVDSEWIEMLLNCSWNPL DISAAVKMIGNESKCRDSEFSKDFYSDNHNEECDDCFKDAWSSSPEKEHLGDQYNCTS VEGKNCDKVSSIECKECDGNQGSVAYPHVDCWPTVDDAERAKLLERIHATFELLIRHK YLAASHLNKVIQFTMDELQSLVSGSQLLNHGVDQTPMCICFLGAMQLRKILKFLQDLS HSCGLTRYSEKTAPVDDVNRASQILEVKEKIVLNGDASCLLLDERLLPDVAIQEAALA NANGSNNYGFVQDADALLSWIFAGPSSGDQLASWIRKKEEKTQQGLEILQMLEKEFYH LQSLCEKKCDHISYEEALQAVEDLCLEEGKKRETATEFVYRSYESVLRKRREELIESE NDVMFLSSRFELDAISNVLKEAEALNVNQFGYEDTYAGVTSQLCDLESGEGDDWRTKD YLHQVDTCIEVAIQRQKEQLSLELSKIDARIMQNVTGMQQLELKLEPASAHDYRLIML PLVKSYLRAHLEDLAEKDATEKSDAAREAFLAELACDSKKGSRGGSDNSRHAQEKSKD KKKNKELRKSKDSKASGANEQHMLNDETAEQVSSAVASDGDHLDSEVVSVNSDDLKQQ EEEFRRKIELEAEERKLEETLEYQRRIENEAKQKHLAEQHKKTNQVFEEIAANGLRDA YWEASDLDIQEHLAISNRVTDNLDSIPLSTANGSAVAVTSNTSGTYAKFKQGLSNGAV PEDALFPGDRRAGRRGRRHKSSNKFLDGKYQVIPSEKESIQVGSSHGNVEEQVRYVDG FPMDSVAPISVEGGTKTLRQLQAEEDDEERFQADLKQAVRQSLDTYQAQQKMPLGSSL RTAPRVPLQVNNHGVSPNEVSSENLNETDVLGTGLQNEVGEYNCFLNVIIQSLWHLRR FRDEFLRRSTSDHVHVGDPCVVCALYEIFSALNISSTDARREPVAPTSLRVALSNLYP DSNFFQEAQMNDASEVLAVIFDCLHRSFTSGSSVSNADSADSNCTGSWDCANSACMVH SLFGMDIFERMNCYKCGVESRRLKYTSFFHNINASALRTMKVLCAESSFDELLNLVER NHQLACDPEAGGCRRLNCIHHILSNPPHVFTTGCP" CDS complement(join(17035173..17035196,17035296..17035571, 17035699..17035914,17036031..17036227,17037016..17037129, 17038336..17038545,17038630..17038753,17038897..17039179, 17039315..17039367,17039457..17039648,17039729..17039857, 17039949..17042585)) /locus_tag="TCM_013775" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase-related protein isoform 4" /protein_id="EOY21686.1" /db_xref="Phytozome:GSVIVT01008079001" /db_xref="TAIR:AT3G47890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTB6" /translation="MGHKKKNAAPRSKRPSSQPPPVAATTVVDVINDSAERELTGNNA KIEVAAVAVESDASSSSSYAAVKIECERALTALRRGNHTKALRLMKESCTCHENSAHA ALIHRVQGTVCVKVASIIDDPNAKHRHLKNAIDSAKKAVELSPNSIEFSHFYANLLYE AANDGKEFEEVVQECERALAIENPVDPAKESLQEESQQKISTAEARILHVQSELRSLI QKSNIASISTWMKNLGNGEEKFRLIPIRRVTEDPMEVRLVQTRRPNEIKKATKTPEER RKEIEVRVAAARLLQQQKSEAASSALLQSDGERNGLDLTSGSGQRGGVERRRKIGSTA ERKDWVRSFWNSMSVDSKKDLLRIRVSDLKEYFGLLKDGLASEVLSEALAFAELNKTW KFWVCCRCSEKFAVSESHMQHVVQEHMGNLMPKMQTVLPQSVDSEWIEMLLNCSWNPL DISAAVKMIGNESKCRDSEFSKDFYSDNHNEECDDCFKDAWSSSPEKEHLGDQYNCTS VEGKNCDKVSSIECKECDGNQGSVAYPHVDCWPTVDDAERAKLLERIHATFELLIRHK YLAASHLNKVIQFTMDELQSLVSGSQLLNHGVDQTPMCICFLGAMQLRKILKFLQDLS HSCGLTRYSEKTAPVDDVNRASQILEVKEKIVLNGDASCLLLDERLLPDVAIQEAALA NANGSNNYGFVQDADALLSWIFAGPSSGDQLASWIRKKEEKTQQGLEILQMLEKEFYH LQSLCEKKCDHISYEEALQAVEDLCLEEGKKRETATEFVYRSYESVLRKRREELIESE NDVMFLSSRFELDAISNVLKEAEALNVNQFGYEDTYAGVTSQLCDLESGEGDDWRTKD YLHQVDTCIEVAIQRQKEQLSLELSKIDARIMQNVTGMQQLELKLEPASAHDYRLIML PLVKSYLRAHLEDLAEKDATEKSDAAREAFLAELACDSKKGSRGGSDNSRHAQEKSKD KKKNKELRKSKDSKASGANEQHMLNDETAEQVSSAVASDGDHLDSEVVSVNSDDLKQQ EEEFRRKIELEAEERKLEETLEYQRRIENEAKQKHLAEQHKKTNQVFEEIAANGLRDA YWEASDLDIQEHLAISNRVTDNLDSIPLSTANGSAVAVTSNTSGTYAKFKQGLSNGAV PEDALFPGDRRAGRRGRRHKSSNKFLDGKYQVIPSEKESIQVGSSHGNVEEQVRYVDG FPMDSVAPISVEGGTKTLRQLQAEEDDEERFQADLKQAVRQSLDTYQAQQKMPLGSSL RTAPRVPLQVNNHGVSPNEVSSENLNETDVLGTGLQNEVGEYNCFLNVIIQSLWHLRR FRDEFLRRSTSDHVHVGDPCVVCALYEIFSALNISSTDARREPVAPTSLRVALSNLYP DSNFFQEAQMNDASEVLAVIFDCLHRSFTSGSSVSNADSADSNCTGSWDCANSACMVH SLFGMDIFERMNCYKCGVESRRLKYTSFFHNINASALRTMKKAPLMSF" gene complement(17043113..17049876) /locus_tag="TCM_013776" /note="dbxref CacaoGD:Thecc1EG013776" mRNA complement(join(17043113..17043328,17044728..17045257, 17045428..17048059,17049602..17049876)) /locus_tag="TCM_013776" /product="Pentatricopeptide repeat-containing protein, putative" /inference="similar to AA sequence:ricco:30147.m014056" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1212t1_C2" CDS complement(17045477..17048056) /locus_tag="TCM_013776" /note="dbxref ricco:30147.m014056" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative" /protein_id="EOY21688.1" /db_xref="TAIR:AT1G74750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R930" /translation="MLRAKQIGNLSSSARSFLFSGSRCSASDGNSCTCPEDESCVSRK RSIRNEVLSKSSGRGTLALGTASKAVGSHEAERAPQLVSSPIPLHRSGNVNYDVNIDA AQLDGQASAPISDQFVKAGIAAVSFLSDMMNYKLPLSDGGVMLSSPKNCVVESSRQLP NIKSPAVKPIKKENFAKVYPKPSSEIAAGPKSTVSYHGTKDRGNKPNFVRGYKQVSNA ASVGSSETHRTSANTCDKGKPMPQRVKAHSHRFMSNFNSNVLPSDAKFSDSGTEGFKK SFRDMKMPTGVVPMTRPLAGTRHVTESVSHILQQLNWGPAAEQALENLNFSMDAYQAN QVLKQIQDHTVALGFFYWLKQRAGFKHDGHTYTTMVGILGRARQFGAINRLLDQMVKD GCQPNVVTYNRLIHSYGRANYLKEAINVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLD VAMDLYQRMQAVGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCVPNLVTYNI MIALQAKARNYESALKLYRDMQNAGFDPDKVTYSIVMEVLGHYGYLDEAESIFAEMKK KNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSAFLRVHRL SDAYNLLQNMVALGLNPSLQTYTLLLSCCTEARSPYDMGFCCQLMAVTGHPAHMFLLS MPSAGPDGQNVRDHVGKFLDMMHSEDRESKRGLVDSVVDFLHKSGLKEEAGSVWEVAA QKNVYPDAVREKSSCYWLINLHVMSDGTAVTALSRTLAWFRQQMLVSGISPSRIDIVT GWGRRSRVTGSSLVRQAVQDLLSIFSFPFFTENGNSGCFVGCGEPLNRWLLQSYVERM HLL" mobile_element 17054356..17054875 /note="source:CACAO_M_E42514_F40_scaffold_5 10280 10800" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17055886..17056216 /note="source:CACAO_M_E12610_F15_scaffold_3 2327 2657" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17056317..17056715) /note="source:CACAO_M_E85187_F15_scaffold_10 1 399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17056716..17058678) /note="source:CACAO_M_E12376_F15_scaffold_3 1 1968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17058679..17058709) /note="source:INTACT407F_F356_scaffold_4-int 5143 5174" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17063686..17071437 /note="source:CACAO_M_E22318_F12_scaffold_3 1 10518" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17074342..17079216) /locus_tag="TCM_013779" /note="dbxref CacaoGD:Thecc1EG013779" mRNA complement(join(17074342..17074581,17074673..17075017, 17079097..17079216)) /locus_tag="TCM_013779" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019032t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(17074475..17074581,17074673..17074928)) /locus_tag="TCM_013779" /note="paralog of Thecc1EG019032t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21689.1" /translation="MIRGSDAPQFAFVLKERFIYLIDKFQAMKAKNNLNALLGDIMVI FSRLAIVKEVYDHVIRHPFYHSNFIQYSALHDIIHQKKVLTDIIGLLKTMSLVTKVQL NNKDLFVQKQDIHIQNTR" mobile_element complement(17075413..17078036) /note="source:CACAO_M_S_E85177_F5_scaffold_7 17613 20247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17078888..17082121 /note="source:INTACT118_F5_scaffold_9-int 2759 5852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17085019..17085217 /note="source:INTACT1430F_F92_scaffold_9-int 7521 7722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17087703..17087937 /note="source:CACAO_M_E49857_F85_scaffold_7 20735 20984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17094101..17095842 /note="source:CACAO_M_E22324_F60_scaffold_3 1 1742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17096761..17096951 /note="source:CACAO_M_E13038_F22_scaffold_3 10970 11159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17098029..17098094 /note="source:CACAO_M_E49559_F88_scaffold_7 7601 7667" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17098964..17100942 /note="source:scaffold_4_CACTA_0503 4216 6180" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17101541..17101595 /note="source:scaffold_8_CACTA_0859 16506 16561" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17101618..17102526 /note="source:scaffold_7_CACTA_0789 13922 14832" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17102208..17103746) /note="source:INTACT280_F60_scaffold_5-int 9244 10789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17104136..17104807 /note="source:scaffold_7_CACTA_0789 15616 16287" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17104820..17105747 /note="source:scaffold_8_CACTA_0859 16591 17507" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17106038..17106449) /note="source:CACAO_M_E44210_F112_scaffold_5 13674 14103" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17107618..17110552) /note="source:CACAO_M_E10140_F143_scaffold_2 1 2919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17111006..17112007) /note="source:CACAO_M_S_E65011_F7_scaffold_5 2005 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17112008..17114674) /note="source:CACAO_M_E50575_F144_scaffold_7 1 2688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17114675..17116668) /note="source:CACAO_M_S_E97843_F7_scaffold_8 1 1987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17117452..17117561 /note="source:scaffold_8_CACTA_0859 17819 17926" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17118821..17120911) /note="source:CACAO_M_E14113_F106_scaffold_3 10689 12778" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17121498..17121566) /note="source:CACAO_M_E36185_F9_scaffold_5 6916 6987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17125693..17127456 /note="source:CACAO_M_E14758_F15_scaffold_3 1 1774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17128139..17128789 /note="source:CACAO_M_E52071_F15_scaffold_7 2445 3095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17128790..17129282 /note="source:INTACT280_F60_scaffold_5-int 1246 1733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17132918..17133092) /note="source:INTACT135F_F90_scaffold_2-int 13828 14002" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17133557..17134020) /note="source:INTACT280_F60_scaffold_5-int 13870 14336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17134016..17134311) /note="source:INTACT280_F60_scaffold_5-int 10618 10918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17134312..17137234 /note="source:CACAO_M_E22343_F86_scaffold_3 1 2923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17141469..17142611) /note="source:CACAO_M_E3859_F82_scaffold_1 2017 3151" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17143850..17144318) /note="source:CACAO_M_E84908_F12_scaffold_10 6638 7106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17150249..17151176 /note="source:CACAO_M_E23144_F272_scaffold_4 10524 11456" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17151055..17151197 /note="source:CACAO_M_S_E119615_F3_scaffold_9 7033 7172" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17154186..17160341 /locus_tag="TCM_013784" /note="dbxref CacaoGD:Thecc1EG013784" mRNA join(17154186..17155203,17155513..17155656, 17155785..17155937,17157342..17157457,17157571..17157738, 17159109..17159339,17159677..17160341) /locus_tag="TCM_013784" /product="Calcium-dependent protein kinase 30 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014057" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021684t2" /inference="similar to AA sequence:ricco:30147.m014057" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3316t2" mRNA join(17154351..17155203,17155513..17155656, 17155785..17155937,17157342..17157457,17157571..17157791, 17159109..17159182) /locus_tag="TCM_013784" /product="Calcium-dependent protein kinase 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014057" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021684t2" /inference="similar to AA sequence:ricco:30147.m014057" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc769t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3316t2" CDS join(17154537..17155203,17155513..17155656, 17155785..17155937,17157342..17157457,17157571..17157738, 17159109..17159339,17159677..17159850) /locus_tag="TCM_013784" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014057; paralog of Thecc1EG021684t2" /codon_start=1 /product="Calcium-dependent protein kinase 30 isoform 1" /protein_id="EOY21690.1" /db_xref="TAIR:AT1G74740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSF8" /translation="MGNCNACVRPDDSPESKPNRSEHSQRGKKKTRERKPNPYAEKVP SPAPIRVLKDVIPLSHRTRIGDKYILGRELGRGEFGITYLCTDRETREALACKSISKR KLRTAVDIEDVRREVAIMSTLPEHPNIVKLKATYEDNENVHLVMELCEGGELFDRIVA RGHYTERAAANVAKTIAEVVRMCHENGVMHRDLKPENFLFANKKEHAPLKAIDFGLSV FFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGV ALAILRGVIDFKREPWPQVSESAKSLVRQMLEPDPKKRLTAQQVLEHSWLQNAKKAPN VPLGDIVRTRLKQFSVMNRFKKKALRVIAEHLSVEEVEVIRDMFTLMDTDNDGKVSYE ELKAGLRKVGSQLAEPEIKMLMEVADVDGNGVLDYGEFVAVTIHLQKMENDEHFRRAF MFFDKDGSGYIELDELQEALADESGEADVDVLNDIMREVDTDKDGCISYDEFVAMMKA GTDWRKASRQYSRERFKSLSLNLMKDGSLQLHDAVTGQAVAV" CDS join(17154537..17155203,17155513..17155656, 17155785..17155937,17157342..17157457,17157571..17157771) /locus_tag="TCM_013784" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014057; paralog of Thecc1EG021684t2" /codon_start=1 /product="Calcium-dependent protein kinase 1 isoform 2" /protein_id="EOY21691.1" /db_xref="TAIR:AT1G18890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSF8" /translation="MGNCNACVRPDDSPESKPNRSEHSQRGKKKTRERKPNPYAEKVP SPAPIRVLKDVIPLSHRTRIGDKYILGRELGRGEFGITYLCTDRETREALACKSISKR KLRTAVDIEDVRREVAIMSTLPEHPNIVKLKATYEDNENVHLVMELCEGGELFDRIVA RGHYTERAAANVAKTIAEVVRMCHENGVMHRDLKPENFLFANKKEHAPLKAIDFGLSV FFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGV ALAILRGVIDFKREPWPQVSESAKSLVRQMLEPDPKKRLTAQQVLEHSWLQNAKKAPN VPLGDIVRTRLKQFSVMNRFKKKALRVIAEHLSVEEVEVIRDMFTLMDTDNDGKVSYE ELKAGLRKVGSQLAEPEIKMLMEVVWVNSCLHRI" mobile_element complement(17160906..17160952) /note="source:CACAO_M_E12463_F12_scaffold_3 4574 4615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17163879..17170613 /note="source:CACAO_M_E22348_F13_scaffold_3 1 6735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17171309..17180204 /note="source:CACAO_M_E22348_F13_scaffold_3 6736 15631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17189467..17190143) /note="source:CACAO_M_E23144_F272_scaffold_4 8148 8825" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17191252..17202210) /note="source:INTACT209_F33_scaffold_5-int 1 10980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17202345..17202503) /note="source:scaffold_5_CACTA_0607 9673 9842" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17212404..17213066) /note="source:scaffold_3_CACTA_0382 11231 11879" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17216769..17217061 /note="source:CACAO_M_E65029_F82_scaffold_9 6940 7232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17217503..17218814 /note="source:CACAO_M_E69485_F323_scaffold_9 2166 3467" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17221394..17221811 /note="source:CACAO_M_E44087_F42_scaffold_5 2432 2850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17224473..17225175 /note="source:CACAO_M_E49857_F85_scaffold_7 21104 21782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17225176..17225700 /note="source:CACAO_M_E22859_F42_scaffold_3 1 525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17225801..17226764) /note="source:scaffold_3_CACTA_0382 10222 11168" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17227304..17227363) /note="source:scaffold_3_CACTA_0382 1855 1915" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17232612..17232910 /note="source:CACAO_M_E49857_F85_scaffold_7 1166 1465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17236778..17237042 /note="source:CACAO_M_E619_F15_scaffold_1 8161 8425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17237624..17238156 /note="source:CACAO_M_E22375_F15_scaffold_3 831 1363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17238257..17238669) /note="source:CACAO_M_E294_F134_scaffold_1 8968 9381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17238640..17238731 /note="source:CACAO_on_E279_scaffold_9 8420 8513" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 17238670..17238731 /note="source:CACAO_M_E53587_F207_scaffold_8 15693 15754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17238730..17240402 /note="source:CACAO_M_E12297_F14_scaffold_3 6345 8019" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17238732..17238742 /note="source:CACAO_M_E14081_F316_scaffold_3 6496 6568" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17242225..17243542 /note="source:CACAO_M_E44599_F33_scaffold_6 2554 3871" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17254529..17254735) /note="source:CACAO_M_E12489_F323_scaffold_3 1 207" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17254736..17255736 /note="source:CACAO_M_E5390_F15_scaffold_2 9614 10615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17258782..17260751) /note="source:CACAO_M_E33441_F85_scaffold_4 5346 7349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17264954..17265725 /note="source:CACAO_M_E22361_F85_scaffold_3 2398 3169" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17265726..17269587) /note="source:CACAO_M_E33441_F85_scaffold_4 1 3916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17270990..17273786 /note="source:CACAO_M_E22363_F303_scaffold_3 1 2797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17273556..17273818) /note="source:CACAO_on_S_E390_scaffold_9 15131 15391" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17275424..17276556) /note="source:INTACT135F_F90_scaffold_2-int 12863 14001" /mobile_element_type="retrotransposon:LTR/Copia" gene 17276494..17280773 /locus_tag="TCM_013789" /note="dbxref CacaoGD:Thecc1EG013789" mRNA join(17276494..17277406,17279651..17280773) /locus_tag="TCM_013789" /product="DNAJ heat shock family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g34420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010025t1" /inference="similar to AA sequence:frave:gene09567" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3312t1" mRNA join(17276494..17277406,17279651..17279751, 17279841..17280773) /locus_tag="TCM_013789" /product="DNAJ heat shock family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g34420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008213t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400055771" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b013319t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3312t1" CDS join(17276625..17277406,17279651..17280095) /locus_tag="TCM_013789" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene09567; paralog of Thecc1EG010025t1" /codon_start=1 /product="DNAJ heat shock family protein isoform 1" /protein_id="EOY21692.1" /db_xref="TAIR:AT3G47940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU57" /translation="MILLLIILLFSFRFSNRQILPHVSLSFLLPLFSVTFPPRFPTMG VDYYNILKVNRHASDDDLKKAYKRLAMIWHPDKNPSYKRPEAEAKFKLISEAYDVLSD PQKRQIYDLYGEEALKSGQFPPSSSSASHSFSSTAPSPSASNPRGGGHYYNSNNNNNQ RQQQPNTGSFRFNPRDAEDIYEELFGAEANGGGVGGRGNRGFREGYFRNNNGYGSSSS SSSNVEMRKAAAVENVLPCSLEELYKGSKRKMRLSRKVFDPSGKLGSLEEILTIEIKP GWKRGTKITFPEKGNEEPGIIPADVIFVIEEKPHALYKRDGNDLVVNQEITLLEALTG KTLDLITLDGRNLMIPLTDITKPGADVVVPNEGMPISKEPGRKGNLRIKLDVKYPSRL TAEQKAELRRVLGGVD" CDS join(17276625..17277406,17279651..17279751, 17279841..17279872) /locus_tag="TCM_013789" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG008213t1" /codon_start=1 /product="DNAJ heat shock family protein isoform 2" /protein_id="EOY21693.1" /db_xref="Phytozome:PGSC0003DMP400055771" /db_xref="TAIR:AT3G47940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU57" /translation="MILLLIILLFSFRFSNRQILPHVSLSFLLPLFSVTFPPRFPTMG VDYYNILKVNRHASDDDLKKAYKRLAMIWHPDKNPSYKRPEAEAKFKLISEAYDVLSD PQKRQIYDLYGEEALKSGQFPPSSSSASHSFSSTAPSPSASNPRGGGHYYNSNNNNNQ RQQQPNTGSFRFNPRDAEDIYEELFGAEANGGGVGGRGNRGFREGYFRNNNGYGSSSS SSSNVEMRKAAAVENVLPCSLEELYKGSKRKMRLSRKVFDPSGKLGSLEEILTIEIKP GWKRGTKITFPEKGNEEPGDYTTGGPHW" gene complement(17281922..17283257) /locus_tag="TCM_013790" /note="dbxref CacaoGD:Thecc1EG013790" mRNA complement(join(17281922..17282988,17283071..17283257)) /locus_tag="TCM_013790" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS complement(join(17282782..17282988,17283071..17283088)) /locus_tag="TCM_013790" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21694.1" /translation="MDQMQVVIQLKFFYITSSVKSIRIKQNLNCVNQIKWSSPYKRPQ KRKRGRKMMKYRVEFISNEWEDKEESSESD" gene 17287936..17291486 /locus_tag="TCM_013791" /note="dbxref CacaoGD:Thecc1EG013791" mRNA join(17287936..17288568,17291009..17291486) /locus_tag="TCM_013791" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage" CDS join(17288052..17288568,17291009..17291184) /locus_tag="TCM_013791" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21695.1" /translation="MSSTLMLSVSTIEPNAKSKPFIITPNLRSILARLLGPTCQVLSH RHPWTELVDHTAFAKPAPFSNATSQVCSQNFHLLPTHLPHHTRGCADILTHLPSFITP NPVVITFGMPFLLHAVSFGSTGGRMRPNVLRQKNVANIGGINNSSDILDEQMDLFLNE QELSDFGLFSYIHGAYRRLLERAESGGVLCSNAAEDWLGGFAMRLDHCTADRVELWGG FLRSEASMGLVF" gene 17309209..17334228 /locus_tag="TCM_013793" /note="dbxref CacaoGD:Thecc1EG013793" mRNA join(17309209..17309438,17315920..17316020, 17316149..17316268,17316376..17316474,17316569..17316706, 17316859..17316993,17317092..17317271,17317360..17317566, 17317652..17317771,17317868..17317987,17318103..17318225, 17318314..17318418,17318520..17318664,17318733..17318897, 17319020..17319258,17319443..17319475,17319610..17319691, 17320030..17320190,17320713..17320898,17320984..17321166, 17321307..17321485,17321766..17321808,17322835..17322945, 17323201..17323222,17323546..17323606,17324711..17324951, 17325246..17325378,17325465..17325959,17327227..17327474, 17329177..17329273,17329360..17329488,17332384..17332585, 17333257..17334228) /locus_tag="TCM_013793" /product="H(+)-transporting atpase plant/fungi plasma membrane type" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018330t2" /inference="similar to AA sequence:Phytozome:Glyma04g34370.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08137t00001" CDS join(17315967..17316020,17316149..17316268, 17316376..17316474,17316569..17316706,17316859..17316993, 17317092..17317271,17317360..17317566,17317652..17317771, 17317868..17317987,17318103..17318225,17318314..17318418, 17318520..17318664,17318733..17318897,17319020..17319258, 17319443..17319475,17319610..17319691,17320030..17320190, 17320713..17320898,17320984..17321166,17321307..17321485, 17321766..17321808,17322835..17322945,17323201..17323222, 17323546..17323606,17324711..17324951,17325246..17325378, 17325465..17325959,17327227..17327474,17329177..17329273, 17329360..17329488,17332384..17332585,17333257..17333524) /locus_tag="TCM_013793" /note="paralog of Thecc1EG018330t2" /codon_start=1 /product="H(+)-transporting atpase plant/fungi plasma membrane type" /protein_id="EOY21696.1" /db_xref="Phytozome:Glyma04g34370.1" /db_xref="TAIR:AT5G62670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU58" /translation="MGDKNEVLDAVLKETVDLENIPIEEVFENLRCSREGLTTEAAEE RLVIFGHNKLEEKKESKFLKYLGFMWNPLSWVMESAAIMAIALANGGGKPPDWQDFVG IITLLLINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWSEQDAAILVPGDVISI KLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIAT GVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMIIEIIVMYPIQDRQYRP GIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDK TGTLTLNKLTVDKNLVEVFAKGVDADTVVLMAARASRTENQDAIDSAIVGMLADPKEA RAGIREVHFLPFNPTDKRTALTYIDNDGKMHRVSKGAPEQILNLAHNKSDIERRVHVV IDKFAERGLRSLAVAYQEVPEGRKESSGGPWQFIGLMPLFDPPRHDSAETIRRALNLG VNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPVDELIEKADGFA GVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVL TEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWEFDFPPFMVLI IAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAVMTVIFFWAAYKTDF FPRIFGVPTLEKTAHDDLRKLASAVYLQVSIISQALIFVTRSRSWSYVERPGLLLVVA FVVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDFIKFFIRYALSGR AWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDTKMFTERTHFTELNQMA EEAKRRAEIARLRELHTLKGHVESVLSKAIGVYISPSNSPMPSRSITPSNFLKIPKCR NDIKALRDLFVVDTGKGIASKEDMPEMLPLRDSLLNVKLMITYGGDWVDDTYKGGETR VRGVGSDLSFSSLVKLVEEVVEVNSHNNEIELHASLSHAAGVSQAVIRDDEDVEKCMG PLSFANDTVMVVSDNDASDHIEDDVEEDDTADWNDELHDDCGSTSHPTTVVLEEVEFD DHATTVELEDVEGANPIYENAIALKNDIRSPDDSDQERVNTGVSRQWIILEVDIISFQ TVTSKESRSMDDHLYHEKAFPSKVELKRALSMLALKEHFEVRVKKSCQACFEVGCKEK ACKFALRATKLPEGEYWQLRTFEKVHKCTVDVSANVQPLNSARTIIRLGLGWRDMRFP FARLGIPVSGTSPMSFNKLLFCHQLGKVKREDVGGKGFHQLGKAVDDVNVHNATAMGR FPLVSSAGELRSINHQTSDSGGSQENDPRLDMDQVTNHYELFRANKISRDAFVKELRF LVRDDLLRSTITFLQSMVASSSRPNVSDYDDQIMGDDEYSTLRSKKKWKLALELSTAS IGFSIKPGNALSSSSQFRNNAYAARYLANWTSGKPRNLSIGWLAKRGYDLSVYEPFNS VEGNPVHPTHDTPSSGPSRVVLDPVSNDVMYNMLVRIDKKLSNQTARMQTLELRI" mobile_element 17322618..17323828 /note="source:CACAO_on_E116_scaffold_3 1 1211" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17323290..17327776) /note="source:CACAO_Mutator_E1018_scaffold_5 790 5394" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17325303..17328131) /note="source:scaffold_8_CACTA_0867 10980 13777" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17328135..17328321) /note="source:scaffold_2_CACTA_0275 1852 2037" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17328432..17328480 /note="source:scaffold_10_CACTA_0130 7204 7251" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17328470..17328509) /note="source:scaffold_8_CACTA_0867 8606 8645" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17328621..17328686) /note="source:CACAO_Mutator_E592_scaffold_3 9026 9090" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17328684..17329110) /note="source:scaffold_8_CACTA_0867 10070 10476" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17329744..17331760) /note="source:CACAO_Mutator_E1320_scaffold_6 84 2079" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17331708..17338688) /note="source:scaffold_8_CACTA_0867 1311 8435" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17335727..17339356) /note="source:CACAO_Mutator_E592_scaffold_3 4030 7637" /mobile_element_type="transposon:TIR/Mutator" gene complement(17337727..17342774) /locus_tag="TCM_013796" /note="dbxref CacaoGD:Thecc1EG013796" mRNA complement(join(17337727..17338090,17338202..17338751, 17340048..17341310,17341396..17341955,17342256..17342458, 17342538..17342774)) /locus_tag="TCM_013796" /product="Major facilitator superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008073001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013800t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07340.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3371t2" mRNA complement(join(17340153..17341310,17341396..17341955, 17342241..17342458,17342538..17342693)) /locus_tag="TCM_013796" /product="Major facilitator superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008073001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013800t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07340.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3371t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3371t2" mRNA complement(join(17340153..17341310,17341396..17342458, 17342538..17342566)) /locus_tag="TCM_013796" /product="Major facilitator superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008073001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013800t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07340.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3507t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3371t2" mRNA complement(join(17340153..17341310,17341396..17341955, 17342067..17342265)) /locus_tag="TCM_013796" /product="Major facilitator superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008073001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013800t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07340.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc743t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3371t2" CDS complement(join(17340401..17341310,17341396..17341955, 17342256..17342458,17342538..17342646)) /locus_tag="TCM_013796" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG013800t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 1" /protein_id="EOY21697.1" /db_xref="Phytozome:POPTR_0012s07340.1" /db_xref="TAIR:AT5G62680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTB2" /translation="MEKNDKEAMGTNQKTVTTDHEPEINYRGWKAMPFIIGNETFEKL GAIGTLSNLLIYLTTVFHLKSITAATMINVFNGTTNFGTLLGAFLCDTYFGRYKTLGF ATGLLAIQLTAAIPELHPHRCAAQGNTDCRGPTAGQMAFLLTGLGLIIVGAGGVRPCN LAFGADQFNPKTESGKRGINSFFNWYFFTFTFAQMVSLTLIVYIQSNVSRAIGLGIPA ILMLIACAVYFVGSKIYVKVKATGSPLTSVAQVILVAIKKRQLKLLEQPWLSLFKYTP PKSINSKLPYTDQFKFLDKAAIMTPQDQINPDGSPADPWRLCSMQQVEEVKCLLRVLP IWASQIIYFVAIVQQQTYAVFQAVQSDRRLGNSNFKIPAATYVVFLMLSLTCFIPIYD RVIVPFLRRVRGKEGGITILQRIGIGMFLSVITMLVSAVVEEHRRTIALTQPTLGVAP RKGAISSMSASWLIPQFTLGGLTEAFASIGLVEFYYKQFPENMRSIAGSLFYCGLAGS SYFSSLLILIVHSATKGASTGNWLPEDLNKGRLDYFYYTIACLGVLNLGYFLLCARWY KYKGNEDSLELELEVNGEKSQSDKSFV" CDS complement(join(17340401..17341310,17341396..17341955, 17342241..17342458,17342538..17342646)) /locus_tag="TCM_013796" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG013800t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 2" /protein_id="EOY21698.1" /db_xref="Phytozome:POPTR_0012s07340.1" /db_xref="TAIR:AT5G62680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTB2" /translation="MEKNDKEAMGTNQKTVTTDHEPEINYRGWKAMPFIIGNETFEKL GAIGTLSNLLIYLTTVFHLKSITAATMINVFNGTTNFGTLLGAFLCDTYFGRYKTLGF ATVASFLGLLAIQLTAAIPELHPHRCAAQGNTDCRGPTAGQMAFLLTGLGLIIVGAGG VRPCNLAFGADQFNPKTESGKRGINSFFNWYFFTFTFAQMVSLTLIVYIQSNVSRAIG LGIPAILMLIACAVYFVGSKIYVKVKATGSPLTSVAQVILVAIKKRQLKLLEQPWLSL FKYTPPKSINSKLPYTDQFKFLDKAAIMTPQDQINPDGSPADPWRLCSMQQVEEVKCL LRVLPIWASQIIYFVAIVQQQTYAVFQAVQSDRRLGNSNFKIPAATYVVFLMLSLTCF IPIYDRVIVPFLRRVRGKEGGITILQRIGIGMFLSVITMLVSAVVEEHRRTIALTQPT LGVAPRKGAISSMSASWLIPQFTLGGLTEAFASIGLVEFYYKQFPENMRSIAGSLFYC GLAGSSYFSSLLILIVHSATKGASTGNWLPEDLNKGRLDYFYYTIACLGVLNLGYFLL CARWYKYKGNEDSLELELEVNGEKSQSDKSFV" CDS complement(join(17340401..17341310,17341396..17342006)) /locus_tag="TCM_013796" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG013800t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 3" /protein_id="EOY21699.1" /db_xref="Phytozome:POPTR_0012s07340.1" /db_xref="TAIR:AT5G62680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTB2" /translation="MNASNPLVFFPILLIMKGLLAIQLTAAIPELHPHRCAAQGNTDC RGPTAGQMAFLLTGLGLIIVGAGGVRPCNLAFGADQFNPKTESGKRGINSFFNWYFFT FTFAQMVSLTLIVYIQSNVSRAIGLGIPAILMLIACAVYFVGSKIYVKVKATGSPLTS VAQVILVAIKKRQLKLLEQPWLSLFKYTPPKSINSKLPYTDQFKFLDKAAIMTPQDQI NPDGSPADPWRLCSMQQVEEVKCLLRVLPIWASQIIYFVAIVQQQTYAVFQAVQSDRR LGNSNFKIPAATYVVFLMLSLTCFIPIYDRVIVPFLRRVRGKEGGITILQRIGIGMFL SVITMLVSAVVEEHRRTIALTQPTLGVAPRKGAISSMSASWLIPQFTLGGLTEAFASI GLVEFYYKQFPENMRSIAGSLFYCGLAGSSYFSSLLILIVHSATKGASTGNWLPEDLN KGRLDYFYYTIACLGVLNLGYFLLCARWYKYKGNEDSLELELEVNGEKSQSDKSFV" CDS complement(join(17340401..17341310,17341396..17341853)) /locus_tag="TCM_013796" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG013800t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 4" /protein_id="EOY21700.1" /db_xref="Phytozome:POPTR_0012s07340.1" /db_xref="TAIR:AT5G62680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTB2" /translation="MAFLLTGLGLIIVGAGGVRPCNLAFGADQFNPKTESGKRGINSF FNWYFFTFTFAQMVSLTLIVYIQSNVSRAIGLGIPAILMLIACAVYFVGSKIYVKVKA TGSPLTSVAQVILVAIKKRQLKLLEQPWLSLFKYTPPKSINSKLPYTDQFKFLDKAAI MTPQDQINPDGSPADPWRLCSMQQVEEVKCLLRVLPIWASQIIYFVAIVQQQTYAVFQ AVQSDRRLGNSNFKIPAATYVVFLMLSLTCFIPIYDRVIVPFLRRVRGKEGGITILQR IGIGMFLSVITMLVSAVVEEHRRTIALTQPTLGVAPRKGAISSMSASWLIPQFTLGGL TEAFASIGLVEFYYKQFPENMRSIAGSLFYCGLAGSSYFSSLLILIVHSATKGASTGN WLPEDLNKGRLDYFYYTIACLGVLNLGYFLLCARWYKYKGNEDSLELELEVNGEKSQS DKSFV" mobile_element complement(17343250..17344159) /note="source:INTACT711_F307_scaffold_9-int 11277 12213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17344157..17348519) /note="source:INTACT10_F4_scaffold_6-int 605 4967" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17348515..17348904 /note="source:INTACT160_F4_scaffold_7-int 1457 1845" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17350917..17353488 /note="source:scaffold_1_CACTA_0016 2872 5502" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17354083..17354173 /note="source:CACAO_M_E1841_F5_scaffold_1 15421 15508" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17354147..17354635 /note="source:scaffold_5_CACTA_0596 13033 13528" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17356956..17358572 /note="source:scaffold_3_CACTA_0385 3273 4925" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17361258..17364284 /note="source:scaffold_3_CACTA_0385 1899 4927" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17365393..17365477) /note="source:scaffold_8_CACTA_0858 9388 9474" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17367945..17369051 /note="source:scaffold_10_CACTA_0130 6253 7355" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17368974..17369159 /note="source:CACAO_PIF_E119_scaffold_3 13642 13826" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 17369027..17369760 /note="source:scaffold_10_CACTA_0130 8883 9606" /mobile_element_type="transposon:TIR/CACTA" gene complement(17369744..17376810) /locus_tag="TCM_013800" /note="dbxref CacaoGD:Thecc1EG013800" mRNA complement(join(17369744..17371122,17371665..17372224, 17372310..17372527,17372623..17372915,17376567..17376810)) /locus_tag="TCM_013800" /product="Major facilitator superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013796t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s07320.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05517t00001" CDS complement(join(17370225..17371122,17371665..17372224, 17372310..17372527,17372623..17372713)) /locus_tag="TCM_013800" /note="paralog of Thecc1EG013796t2" /codon_start=1 /product="Major facilitator superfamily protein, putative" /protein_id="EOY21701.1" /db_xref="Phytozome:POPTR_0012s07320.1" /db_xref="TAIR:AT5G62680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTB2" /translation="MEKTENGSTATTTDEPKINYRGIKAMPFVIGNETFEKLGTTGTA TNLLVYLTAVFNMKSITATNLVNVFNGTCSFATLIGAFLSDTYFGRYKTLGFASVASL LGMLLVTLTAAVSKLHPPACDSSGSAACPGPTPWQMAFLLSGLGLLVVGAAGIRPCNL AFGADQFNPETESGKRGISSFFNWYYFTFTFAMMVSLTVIVFVQTDVSWAWGLGIPAF MMFLSCVMFFIGTRIYVKVRPEGSPITSVIQVMVAAVRKRQLKQPEQPWVSLFNHIPK SSINSKLSYSDQLRFLNKAAILTPEDEINSDGSAANPWRLCSLQKVEEIKCVIRVVPV WAAGIIYYVAMVQQQTYVVFQALQSNRHLGNTGFNIPAASYGIFIMIGLTIWIPIYDR IIVPWLQRYTKKEGGITLLQKMGIGMVLAIVTMLLSAIVEDRRRAFALSKPIGIDSRR RAISSLSAMWYIPQLTLIGLSEAFTIIALMEFYYKQFPENMRSIAGSFTHIGFALANY LNSILISVVHKITKVAPTGDWLPEDLNKGKLDYIYYLVAALEVLNLGYFIMCAKWCKY KESVITSPDVGMEDLQSEKPVV" mobile_element complement(17374744..17374874) /note="source:CACAO_M_S_E5046_F335_scaffold_1 2135 2194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17376079..17377808) /note="source:INTACT375F_F353_scaffold_3-int 1233 2859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17377290..17378118 /note="source:INTACT674_F296_scaffold_6-int 5617 6425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17378540..17378734 /note="source:INTACT674_F296_scaffold_6-int 6751 6955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17378564..17379677) /note="source:INTACT157_F155_scaffold_1-int 10733 11750" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17378992..17381858 /note="source:INTACT61_F128_scaffold_2-int 2575 5755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17381859..17382190 /note="source:CACAO_M_E49548_F86_scaffold_7 1 336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17383812..17384659 /note="source:CACAO_M_S_E64023_F13_scaffold_5 18796 19650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17384657..17389145 /note="source:INTACT61_F128_scaffold_2-int 5751 10214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17389311..17391642) /note="source:INTACT375F_F353_scaffold_3-int 1233 3466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17394633..17394938 /note="source:INTACT674_F296_scaffold_6-int 6128 6442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17395002..17397221 /note="source:CACAO_M_E22375_F15_scaffold_3 1 2220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17397472..17400170 /note="source:CACAO_M_E22375_F15_scaffold_3 2221 4919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17400271..17403384 /note="source:CACAO_M_E22375_F15_scaffold_3 4920 8033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17406689..17406861 /note="source:INTACT674_F296_scaffold_6-int 6748 6926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17406792..17407248) /note="source:INTACT375F_F353_scaffold_3-int 23 385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17409744..17410532 /note="source:CACAO_M_E35811_F12_scaffold_5 15272 16060" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17411605..17412283 /note="source:CACAO_Again_on_E14_scaffold_1 3350 4034" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(17418057..17418237) /note="source:CACAO_Again_on_E14_scaffold_1 11057 11247" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(17418363..17418564) /note="source:CACAO_Again_on_E14_scaffold_1 32 214" /mobile_element_type="transposon:TIR/hAT" mobile_element 17423454..17424083 /note="source:INTACT591_F264_scaffold_1-int 18040 18747" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 17424084..17434083 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(17434084..17439019) /note="source:CACAO_M_S_E82995_F85_scaffold_6 2517 7526" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17435243..17441693 /note="source:INTACT759_F323_scaffold_6-int 4158 10614" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17437344..17450711 /locus_tag="TCM_013804" /note="dbxref CacaoGD:Thecc1EG013804" mRNA join(17437344..17437939,17440138..17440211, 17441082..17441140,17446513..17447006,17447222..17447795, 17447904..17447984,17449839..17449925,17450302..17450711) /locus_tag="TCM_013804" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013989t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037631001" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage" mobile_element complement(17442740..17445538) /note="source:CACAO_Again_on_S_E228_scaffold_7 1 2819" /mobile_element_type="transposon:TIR/hAT" CDS join(17447225..17447795,17447904..17447984, 17449839..17449925,17450302..17450468) /locus_tag="TCM_013804" /note="paralog of Thecc1EG013989t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21702.1" /db_xref="Phytozome:GSVIVT01037631001" /db_xref="UniProtKB/TrEMBL:UniRef50_A5APY5" /translation="MNLSRQFELIKMKEDDNTQEYTNKLLKLVNQLRMFSQEVTDQKI VNKILVSISNKFKLKVTSLKDLKDLTKITMKELISTFLAFEQRRAFKHENLAENALVA KTKGLRVKSDGSNKNNSNGSKSSVAKQRKNQDKFPSCTHCKKTNHTPKYCWFRPNVKC RACNQLGHVEKVCKAKKQEAEGKAIVTKETDLFTDLDKSIRAHVEIGNGLYMKILGVG KIVVLIVAVYVDDLLITGPNDDVLQEFKEQRSKAIIDKMTKSMHASALTLLLEVCIDH FQLCLQVCKSRYRQSLRENIWKLIY" gene complement(17449892..17454546) /locus_tag="TCM_013805" /note="dbxref CacaoGD:Thecc1EG013805" mRNA complement(join(17449892..17450824,17450913..17451385, 17451479..17452579,17452748..17452902,17453104..17453272, 17453467..17453515,17453603..17454161,17454234..17454546)) /locus_tag="TCM_013805" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s01135.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019110t1" /inference="similar to AA sequence:frave:gene24361" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" mobile_element 17450028..17454746 /note="source:INTACT282_F192_scaffold_3-int 1 4719" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(17450766..17450824,17450913..17451385, 17451479..17452579,17452748..17452902,17453104..17453272, 17453467..17453515,17453603..17454161,17454234..17454329)) /locus_tag="TCM_013805" /note="dbxref frave:gene24361; paralog of Thecc1EG019110t1; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21703.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BMR0" /translation="MSTSTVTQQTAPIFYGSNYPMWAIRMKAFLRGVKQYEEDIAKKY RALSFIHSAVTESVFSHIMSCETAKQAWDKLEEEFLGSGRNKQIRLQNLRRQYELLRM KDSQNVQKFIDAVMKVVNQIRLLGENLSDAKVVEKILISLLERFDATVSSFEQVRDIS QLSISDLVNILEVDEQKRTARKNDKSDLALTVRMKGKAHAKASTKKNLSEVKEKGSTQ GQTQGVMLANSLVMSKRSKVKIGNGVYLDAVGRGTVGIYTSSGLRYVHDVLLIPGIVQ NLLSVGQMLENNYELNLVDNLPKFTQSASMCGVCKLGKQSRKPFPTDTPQRARNKLEL VHSDVAGPISDNGGEYTSQQFEGFLMVEGINHQLTVPYSPQQNGVSKRKNRSILDMAR CLLFEKSLPKKFWVEACNTAVYLLNRLPTKVVTRLTSYEAWNNKRSSVSYLRIFGSLC YHQILENFRGKLDCRSEPAVFIGYSEQSKGYKLYLVNSDKVIVSRNVIFDENAKWSWD SSESKTLKAPFRIELFEPNDDRIDSSEFTANVDDDNKHYAVRGTRSLVNVYYRSLLAI SEPDSYQAAAESKEWKATMQEEINAINHNNTWTIVDRPQKQHVIEVKWIFRRKFNSDG TLNKCKARLVTKGYSQLPSIDFMHTFAPVARYETIQLLLAISAALGWKVYNFDVKSTF LNGTLKEEVYVEQPEGFKDESNPDKVYSFNEATLYVLKHKNQAQVIVSLYVDDLMITG CNTTAIDRFRSEMEKNFEMFDLGLMNYFLGMEICQTDKGIFLSQGNYIQTILNRFHLS SYNPVSTPLVVNQKLTVGDGSKLEDATSYRSLIRSLLYICSTRPELMYSTSLQSRFMK EPTNVHLAAARLTGQEVLKIPEALQDIFSH" gene 17454901..17456248 /locus_tag="TCM_013806" /note="dbxref CacaoGD:Thecc1EG013806" mRNA join(17454901..17455095,17455202..17455355, 17455437..17456248) /locus_tag="TCM_013806" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035415t1" /inference="similar to AA sequence:Phytozome:Glyma07g34840.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage" CDS join(17454930..17455095,17455202..17455355, 17455437..17455524) /locus_tag="TCM_013806" /note="paralog of Thecc1EG035415t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21704.1" /db_xref="Phytozome:Glyma07g34840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ACV8" /translation="MYVTCLLSRFMQSPIMLHFTATKRILKYVKGTADFGLMHVKHDK RELVIVAMIGQEAEYIAIVSVVNQLKWLRQVLANLGFKQENGTVIFVDNQSAIAIAKN PVYHSTEVQPVDILTKGLSKERFETLRTRLGVC" gene complement(17456068..17478627) /locus_tag="TCM_013807" /note="dbxref CacaoGD:Thecc1EG013807" mRNA complement(join(17456068..17458170,17458416..17458633, 17458709..17458842,17463541..17463699,17465221..17465383, 17478450..17478627)) /locus_tag="TCM_013807" /product="Major facilitator superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014061" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021841t1" /inference="similar to AA sequence:ricco:30147.m014061" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(17456686..17458170,17458416..17458633, 17458709..17458842,17463541..17463699,17465221..17465375)) /locus_tag="TCM_013807" /note="dbxref ricco:30147.m014061; paralog of Thecc1EG021841t1" /codon_start=1 /product="Major facilitator superfamily protein, putative" /protein_id="EOY21705.1" /db_xref="TAIR:AT5G28470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3E8X3" /translation="MKRLNTFVDVQHNEEDDEDDEAEGEFDETKEESDNKDENDIDDA EDEKKENEHLTETTKVVTCLYIRNSSHALALAESHSHAMVHVKCTQILTSRDTLHTTL QSSAKSSETEAESKLCMEDSSHSSSVVEDPLSSPARRGGWRAIMFIIGNETFEKVASM SLISNISVYLKTEYNMGGVSVVNVVNIWSGFSNITGVAGAYIADACLGKFLTLLFGSI ASFLGMAMMTLASAVPRFRPSACKGESNCPQPQGWQLAILFAGLGMLSIGAGGIRPCN ISFGADQFDTSTKKGRQQLATFFNWWYFFFTVALVVALTAVVYVQTNISWAVGFAIPA ACLALSTIIFLIGYNTYNYVKPQGSIFVDMVKVIAAASKKRHFTITPGWDYPLYNPPV AGSDPSAMELPHSEWFKFLDKASIITDPSELDNHGMAKNSWRLCSLQTVEQLKCLLAV LPVWGSAIVYSIVLEQCSTFGILQAIQMSNSIGSHFKIPAGWMNLVPMLVVAVWIFIY ECIYIPLARKITKQDKRLTIQQRLGTGFVMSILSMLASGIVEKKRRDSALNHGLFASP YSLALLLPQFVLAGLAQAFASVALMEFLTTQMPESMRTVAGALFFLALSTAGYLGSLL VTIIQNVTEKFGKTPWLGGSDLNKNKLDLYYYVIATLGVVNLLYFLFFASRYVINNSD ENRTEVRLERPGARGSRSTSQCGLADEEKVVGIA" mobile_element 17461620..17464542 /note="source:CACAO_M_E22380_F279_scaffold_3 1 2923" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17465132..17468307 /note="source:scaffold_4_CACTA_0497 2483 5633" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17468301..17468385 /note="source:scaffold_4_CACTA_0497 8624 8708" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17468656..17469335) /note="source:INTACT19F_F94_scaffold_1-int 12273 12942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17469295..17471032 /note="source:CACAO_M_S_E19828_F19_scaffold_3 9668 11399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17472094..17472935 /note="source:CACAO_M_E44709_F9_scaffold_6 661 1472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17472920..17473388 /note="source:CACAO_on_SS_E90_scaffold_6 10668 11132" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17474543..17474755) /note="source:CACAO_M_S_E38262_F319_scaffold_4 15625 15843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17474759..17474809) /note="source:CACAO_M_E5899_F5_scaffold_2 20741 20791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17476334..17476856 /note="source:CACAO_M_S_E19828_F19_scaffold_3 10480 11005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17476847..17477583) /note="source:INTACT405F_F91_scaffold_4-int 6877 7611" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17476975..17480094 /note="source:CACAO_M_E52823_F82_scaffold_8 197 3304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17480095..17480722 /note="source:CACAO_M_E42641_F14_scaffold_5 12034 12660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17480720..17481196 /note="source:CACAO_on_SS_E90_scaffold_6 11125 11601" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17481197..17484356) /note="source:CACAO_M_E5899_F5_scaffold_2 19652 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17484377..17484864) /note="source:CACAO_M_E44709_F9_scaffold_6 1 495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17484865..17484968) /note="source:CACAO_M_E49195_F17_scaffold_6 13377 13496" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17486049..17486798) /note="source:CACAO_M_E49195_F17_scaffold_6 2484 3579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17488523..17488950) /note="source:CACAO_M_E1841_F5_scaffold_1 15219 15650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17489685..17489783) /note="source:INTACT280_F60_scaffold_5-int 9660 9780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17491793..17492030 /note="source:INTACT674_F296_scaffold_6-int 4598 4830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17492027..17492304) /note="source:INTACT31_F114_scaffold_8-int 18 295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17492296..17493885 /note="source:INTACT216_F33_scaffold_5-int 1552 3144" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17494188..17498992 /note="source:INTACT216_F33_scaffold_5-int 3468 8316" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17498984..17499768) /note="source:CACAO_M_E12297_F14_scaffold_3 6967 7750" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17499869..17500491) /note="source:CACAO_M_E12297_F14_scaffold_3 6346 6957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17502384..17502739 /note="source:INTACT674_F296_scaffold_6-int 6860 7174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17510417..17511188 /note="source:INTACT674_F296_scaffold_6-int 4589 5375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17512589..17512944 /note="source:INTACT674_F296_scaffold_6-int 6860 7174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17514212..17515382 /note="source:INTACT591_F264_scaffold_1-int 18867 20100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17515637..17515868) /note="source:CACAO_M_E58324_F9_scaffold_9 576 804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17515867..17518668) /note="source:CACAO_M_E12297_F14_scaffold_3 17033 19578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17518667..17519255) /note="source:CACAO_M_E58324_F9_scaffold_9 13 582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17519258..17519787 /note="source:scaffold_4_CACTA_0497 8909 9431" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17520196..17523190 /note="source:CACAO_M_S_E31892_F7_scaffold_3 1 2995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17523893..17524406 /note="source:CACAO_M_E22398_F15_scaffold_3 1 514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17524843..17532742 /note="source:CACAO_M_E22398_F15_scaffold_3 515 8414" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17534175..17535195 /note="source:CACAO_M_E22398_F15_scaffold_3 8415 9435" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17535196..17535224) /note="source:INTACT149_F15_scaffold_9-int 7067 7097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17535748..17536240 /note="source:scaffold_4_CACTA_0497 9723 10170" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17537398..17539094 /note="source:CACAO_M_E22375_F15_scaffold_3 1 1698" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17539196..17540219 /note="source:INTACT51F_F15_scaffold_1-int 9876 10897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17540320..17540654) /note="source:CACAO_M_E45026_F15_scaffold_6 8193 8522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17540938..17543705 /note="source:CACAO_M_S_E31899_F15_scaffold_3 1 2756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17543596..17543717) /note="source:CACAO_M_S_E4911_F76_scaffold_1 2960 3081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17545219..17545454 /note="source:scaffold_4_CACTA_0497 9353 9641" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17546626..17557376 /note="source:CACAO_M_E3634_F15_scaffold_1 1 10732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17558345..17561270 /note="source:CACAO_M_E22404_F247_scaffold_3 1 2926" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17566907..17573181 /locus_tag="TCM_013815" /note="dbxref CacaoGD:Thecc1EG013815" mRNA join(17566907..17566921,17567494..17567603, 17567898..17568033,17568152..17568223,17568331..17568402, 17568551..17568622,17568787..17568858,17568978..17569049, 17569661..17569767,17569862..17570035,17570157..17570489, 17570972..17571226,17571938..17572071,17572217..17573181) /locus_tag="TCM_013815" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene25936" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016737t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008070001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3488t2" mRNA join(17567425..17567603,17567898..17568033, 17568152..17568223,17568331..17568402,17568551..17568622, 17568787..17568858,17568978..17569049,17569661..17569767, 17569862..17570035,17570157..17570489,17570972..17571226, 17571935..17572071,17572216..17572798) /locus_tag="TCM_013815" /product="Leucine-rich repeat protein kinase family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene25936" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016737t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008070001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3488t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3488t2" CDS join(17567522..17567603,17567898..17568033, 17568152..17568223,17568331..17568402,17568551..17568622, 17568787..17568858,17568978..17569049,17569661..17569767, 17569862..17570035,17570157..17570489,17570972..17571226, 17571938..17572071,17572217..17572441) /locus_tag="TCM_013815" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016737t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY21706.1" /db_xref="Phytozome:GSVIVT01008070001" /db_xref="TAIR:AT5G62710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I310" /translation="MRAMLWLFSAIFAATLLSSGSFALTQDGLTLLEIKSTLNDSKNF LGNWLASDESPCSWTGISCYPNDQRVRSINLPYMQLGGTISPSIGKLDGLQRLALHQN SLHGLIPNEITNCTELRALYLRANYLQGGIPSNIGNLSFLTILDLSSNSLKGAIPSSI GRLTRLHYLNLSTNFFSGEIPDIGVLSTFGNKSFIGNLDLCGQQVHKPCRTSLGFPAV LPHAESDEVAVPTKRSSHYIKGVLIGAMSTMALVLVMLLAFLWICLLSKKERAAKRYT EVKKQVQQDISTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGTVYRMVMNDCG TFAVKRIDRSREGSDQVFERELEILGSIKHINLVNLRGYCRLPASKLLIYDYLAMGSL DDFLHEHKEQDRPLNWSARLKIALGSARGLAYLHHDCCPKIVHRDIKSSNILLDENLE PHVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVT GKRPTDPTFVKRGLNVVGWMNTLLRENRLEDVVDKKCTDADMETVEAILEIAAKCTDA NPDQRPTMSQVLQLLEQEVMSPCPSDFYESHSDYC" CDS join(17567522..17567603,17567898..17568033, 17568152..17568223,17568331..17568402,17568551..17568622, 17568787..17568858,17568978..17569049,17569661..17569767, 17569862..17570035,17570157..17570489,17570972..17571226, 17571935..17572071,17572216..17572242) /locus_tag="TCM_013815" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016737t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 2" /protein_id="EOY21707.1" /db_xref="Phytozome:GSVIVT01008070001" /db_xref="TAIR:AT5G62710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I310" /translation="MRAMLWLFSAIFAATLLSSGSFALTQDGLTLLEIKSTLNDSKNF LGNWLASDESPCSWTGISCYPNDQRVRSINLPYMQLGGTISPSIGKLDGLQRLALHQN SLHGLIPNEITNCTELRALYLRANYLQGGIPSNIGNLSFLTILDLSSNSLKGAIPSSI GRLTRLHYLNLSTNFFSGEIPDIGVLSTFGNKSFIGNLDLCGQQVHKPCRTSLGFPAV LPHAESDEVAVPTKRSSHYIKGVLIGAMSTMALVLVMLLAFLWICLLSKKERAAKRYT EVKKQVQQDISTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGTVYRMVMNDCG TFAVKRIDRSREGSDQVFERELEILGSIKHINLVNLRGYCRLPASKLLIYDYLAMGSL DDFLHEHKEQDRPLNWSARLKIALGSARGLAYLHHDCCPKIVHRDIKSSNILLDENLE PHVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPAEYLQSGRATEKSDVYSFGVLLLELV TGKRPTDPTFVKRGLNVVGWDEHSTERE" mRNA join(<17568198..17568223,17568551..17568622, 17568787..17568858,17568978..17569049,17569661..17569767, 17569862..17570035,17570157..17570489,17570972..17571226, 17571938..17572071,17572217..17572823) /locus_tag="TCM_013815" /product="Leucine-rich repeat protein kinase family protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene25936" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016737t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008070001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc100t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3488t2" CDS join(<17568198..17568223,17568551..17568622, 17568787..17568858,17568978..17569049,17569661..17569767, 17569862..17570035,17570157..17570489,17570972..17571226, 17571938..17572071,17572217..17572441) /locus_tag="TCM_013815" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG016737t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 3" /protein_id="EOY21708.1" /db_xref="Phytozome:GSVIVT01008070001" /db_xref="TAIR:AT5G62710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I310" /translation="GKLDGLQRLYLRANYLQGGIPSNIGNLSFLTILDLSSNSLKGAI PSSIGRLTRLHYLNLSTNFFSGEIPDIGVLSTFGNKSFIGNLDLCGQQVHKPCRTSLG FPAVLPHAESDEVAVPTKRSSHYIKGVLIGAMSTMALVLVMLLAFLWICLLSKKERAA KRYTEVKKQVQQDISTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGTVYRMVM NDCGTFAVKRIDRSREGSDQVFERELEILGSIKHINLVNLRGYCRLPASKLLIYDYLA MGSLDDFLHEHKEQDRPLNWSARLKIALGSARGLAYLHHDCCPKIVHRDIKSSNILLD ENLEPHVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLL ELVTGKRPTDPTFVKRGLNVVGWMNTLLRENRLEDVVDKKCTDADMETVEAILEIAAK CTDANPDQRPTMSQVLQLLEQEVMSPCPSDFYESHSDYC" gene 17573318..17576231 /locus_tag="TCM_013817" /note="dbxref CacaoGD:Thecc1EG013817" mRNA join(17573318..17574264,17575994..17576231) /locus_tag="TCM_013817" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s11620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004902t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11620.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc6066t1_C2" CDS 17573392..17574189 /locus_tag="TCM_013817" /note="paralog of Thecc1EG004902t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY21709.1" /db_xref="Phytozome:POPTR_0015s11620.1" /db_xref="TAIR:AT2G47140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HZD8" /translation="MPDREPCNKKLEGKVAIITGGASGIGEATAHLFADHGARAIVIA DIQDEKGEKLAASIGQNRCACTFVHCDVTKEQDVESLVQSTIQLYGRLDIMFSNAGVM SKSQQTILDLDLSSYEKLFAINVGGVAASIKHAGRAMVEGNTKGSIICTASVAARIGS DRHTDYVMSKNAVLALMRCASTQLGAHGIRVNCVSPGPVATPLLCEALRMGVEEVETS FARSYCLKNNGVLKVKHVADAVLFLACEESQFITGHNLAVDGGFRLS" mobile_element complement(17577453..17577501) /note="source:INTACT189_F49_scaffold_5-int 17824 17873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17579233..17583190 /note="source:CACAO_M_E33018_F264_scaffold_4 1 4018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17584419..17584504) /note="source:INTACT592_F15_scaffold_10-int 2938 2999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17585469..17585554) /note="source:INTACT592_F15_scaffold_10-int 2938 2999" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17588518..17591842 /locus_tag="TCM_013819" /note="dbxref CacaoGD:Thecc1EG013819" mRNA join(17588518..17589115,17589336..17589469, 17590765..17590912,17591021..17591127,17591554..17591677, 17591816..17591842) /locus_tag="TCM_013819" /product="Integral membrane HPP family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07650.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008066001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3382t1" CDS join(17588800..17589115,17589336..17589469, 17590765..17590912,17591021..17591127,17591554..17591595) /locus_tag="TCM_013819" /codon_start=1 /product="Integral membrane HPP family protein" /protein_id="EOY21710.1" /db_xref="Phytozome:GSVIVT01008066001" /db_xref="TAIR:AT5G62720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T3E6" /translation="MVTQLRAHYYYHQSNAMAATSLTSSPSISLNSFSPLLFKGCSFI GNKKIASERSLGTTSIRRKQGREYGVVVASSSNVAAPLWDSWKPEKTSSAASLSDILW PSAGAFAAMAILGKMDQILAPKGISMTIAPLGAVCAVLFATPSSPAARKYNMFMAQIG CAAIGVLAFSIFGPGWLARSAALAASVAFMIYTRSTHAPAASLPILFIDGVKLHHLNF WYAFFPGAAGCIILSLIQEVVCYLKDNFKF" gene 17594660..17595570 /locus_tag="TCM_013820" /note="dbxref CacaoGD:Thecc1EG013820" mRNA join(17594660..17594796,17594996..17595570) /locus_tag="TCM_013820" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS join(17594751..17594796,17594996..17595333) /locus_tag="TCM_013820" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21711.1" /translation="MERSVLCLCHGRFSPDQVPRSRKTSTSGWGPEQWRFRRGVCLGW LWWTLSLDLDGDALLAGYVFRGVGMGTFHQDRKRGWHRLKPHRYGFRMVGRKSLEKDK KPLMLRETWTPGLEIIGSHRNCRKE" gene complement(17597726..17599943) /locus_tag="TCM_013821" /note="dbxref CacaoGD:Thecc1EG013821" mRNA complement(join(17597726..17598443,17598695..17599095, 17599276..17599754)) /locus_tag="TCM_013821" /product="Homeobox protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009970t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s07640.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06729t00001; inference alignment:Newbler:10:TSA:cgbaB_g06729t00001" mRNA complement(join(17597874..17598443,17598695..17598891, 17599276..17599883)) /locus_tag="TCM_013821" /product="Homeobox-leucine zipper protein HAT5 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009970t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s07640.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc249t1; inference alignment:Newbler:10:TSA:cgbaB_g06729t00001" mRNA complement(join(17597969..17598443,17598695..17599089, 17599276..17599943)) /locus_tag="TCM_013821" /product="Homeobox protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009970t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s07640.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06729t00001" CDS complement(join(17597991..17598443,17598695..17598891, 17599276..17599426)) /locus_tag="TCM_013821" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG009970t2" /codon_start=1 /product="Homeobox-leucine zipper protein HAT5 isoform 3" /protein_id="EOY21714.1" /db_xref="Phytozome:POPTR_0015s07640.1" /db_xref="TAIR:AT3G01470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEG0" /translation="MAGGRVYPSNTSSAGGSNNLSVLLQSQRVPSSSEPLDPLFIPGS SPSSFLEPERKVQLAKDLGLQPRQIAIWFQNRRARWKTKQLEKDYEALQASYNSLKAD YDNLLKEKDKLKEEVLQLTDKLLVKEKEKGNSELSDVNKLSQEPPQKLVVAETASEGE ESKVSVVACKQEDISSAKSDIFDSDSPHYTDGVHSSLLEAADSSYPFEPDQSDLSQDE EDNLSKGLLHPPSYIFPKLEDDEYSDPPASSCNFGFPVEDHAFWSWAY" CDS complement(join(17597991..17598443,17598695..17599089, 17599276..17599426)) /locus_tag="TCM_013821" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG009970t1" /codon_start=1 /product="Homeobox protein, putative isoform 1" /protein_id="EOY21712.1" /db_xref="Phytozome:POPTR_0015s07640.1" /db_xref="TAIR:AT3G01470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R943" /translation="MAGGRVYPSNTSSAGGSNNLSVLLQSQRVPSSSEPLDPLFIPGS SPSSFLGRRSMVSFEDVHRANIANRSFFRTFDQEENGDEDLDEYFHQPEKKRRLSVDQ VQFLEKSFEVENKLEPERKVQLAKDLGLQPRQIAIWFQNRRARWKTKQLEKDYEALQA SYNSLKADYDNLLKEKDKLKEEVLQLTDKLLVKEKEKGNSELSDVNKLSQEPPQKLVV AETASEGEESKVSVVACKQEDISSAKSDIFDSDSPHYTDGVHSSLLEAADSSYPFEPD QSDLSQDEEDNLSKGLLHPPSYIFPKLEDDEYSDPPASSCNFGFPVEDHAFWSWAY" CDS complement(join(17597991..17598443,17598695..17599095, 17599276..17599426)) /locus_tag="TCM_013821" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG009970t1" /codon_start=1 /product="Homeobox protein, putative isoform 2" /protein_id="EOY21713.1" /db_xref="Phytozome:POPTR_0015s07640.1" /db_xref="TAIR:AT3G01470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R943" /translation="MAGGRVYPSNTSSAGGSNNLSVLLQSQRVPSSSEPLDPLFIPGS SPSSFLVSGRRSMVSFEDVHRANIANRSFFRTFDQEENGDEDLDEYFHQPEKKRRLSV DQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQIAIWFQNRRARWKTKQLEKDYEAL QASYNSLKADYDNLLKEKDKLKEEVLQLTDKLLVKEKEKGNSELSDVNKLSQEPPQKL VVAETASEGEESKVSVVACKQEDISSAKSDIFDSDSPHYTDGVHSSLLEAADSSYPFE PDQSDLSQDEEDNLSKGLLHPPSYIFPKLEDDEYSDPPASSCNFGFPVEDHAFWSWAY " mobile_element 17604859..17605474 /note="source:CACAO_M_S_E68209_F2_scaffold_6 1 617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17605479..17605808) /note="source:CACAO_M_S_E99665_F2_scaffold_9 1 327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17606119..17607370) /note="source:INTACT135F_F90_scaffold_2-int 12864 13997" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17607600..17607779) /note="source:CACAO_Mutator_E1888_scaffold_9 7619 7798" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17607780..17608089) /note="source:INTACT135F_F90_scaffold_2-int 13494 13994" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17609996..17610874) /note="source:scaffold_9_CACTA_0932 2789 3612" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17610227..17610878) /note="source:INTACT135F_F90_scaffold_2-int 12862 13514" /mobile_element_type="retrotransposon:LTR/Copia" gene 17611256..17618790 /locus_tag="TCM_013822" /note="dbxref CacaoGD:Thecc1EG013822" mRNA join(17611256..17611506,17613806..17614027, 17615239..17615344,17615578..17615795,17616771..17617211, 17617295..17618790) /locus_tag="TCM_013822" /product="Nitrate transporter 1:2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014070" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011810t1" /inference="similar to AA sequence:Phytozome:Glyma05g01380.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3394t2" gene 17611256..17613422 /locus_tag="TCM_013823" /note="dbxref CacaoGD:Thecc1EG013823" mRNA join(17611256..17611751,17612030..17613422) /locus_tag="TCM_013823" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.32 coverage" CDS 17612393..17612722 /locus_tag="TCM_013823" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21718.1" /translation="MTQEVTAGRNSNPLSTLFGVAKVRPASHMGTNRSHEVNPTAFLI EAPNRGCSSDGREVRDRYPASPLVASSLVCFYLISCTIMELGSFFYYFCYHLIFKMLS WLTSMCI" mRNA join(17612766..17613283,17615554..17615795, 17616771..17617211,17617295..17618657) /locus_tag="TCM_013822" /product="Nitrate transporter 1:2 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014070" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011810t1" /inference="similar to AA sequence:Phytozome:Glyma05g01380.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2669t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3394t2" gene complement(17612802..17616163) /locus_tag="TCM_013824" /note="dbxref CacaoGD:Thecc1EG013824" mRNA complement(join(17612802..17613283,17615554..17615778, 17616148..17616163)) /locus_tag="TCM_013824" /product="Uncharacterized protein" /note="quality class is strong-expertchoice-cdspoor, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3396t1" CDS complement(17613011..17613160) /locus_tag="TCM_013824" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21719.1" /translation="MLHGWLNENCLIRLNMPLSAIFNSVQPGGYFACEFFTSTALREI ISLAL" CDS join(17614019..17614027,17615239..17615344, 17615578..17615795,17616771..17617211,17617295..17618263) /locus_tag="TCM_013822" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011810t1" /codon_start=1 /product="Nitrate transporter 1:2 isoform 1" /protein_id="EOY21715.1" /db_xref="Phytozome:Glyma05g01380.1" /db_xref="TAIR:AT1G69850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMV8" /translation="MQQEEAHQSNKWEGYVDWRNRPAMRGRHGGMLAASFVLAVEILE NLAFLANASNLVLYLSKFMHYSLSSSANIVTSFMGTAFLLALLGGFLADAFFTTYRLY LTSAAIEFMGLLTLTVQAHIPSLKPPTCALASTEIPCQKVGGQKAALLFTGLYLVALG VGGIKGSLPPHGAEQFDETTPQGRKQRSSFFNYYVFCLSCGALIAVTFVVWIEDNKGW QWGFGIATATILISIPVFLLGSPIYRTKIPAGSPITTMFEVLAAAIYNNCKSKNPSKA VMGMEASPSDRTETSEGEESNTKAMVPSRTPTEDLKFLNKAIKRKPVKPMLDCTVKQV EEVKEVLKILPIFTCTIMLNCCLAQLSTFSVQQAATMNTKIGSLKVPPASLPIFPVIF MVILAPTYNHVIIPFARKVTKTEIGITHLQRIGTGLVLSIIAMAVAALVETKRKKVAV ESGLLNSADSLPITFLWIALQYLFLGSADLFSLVGMMEFFFTEAPTSMRSLATSLSWA SLAMGYYFSSVLISIVNNVTSSFRLTPWLSGSNLNHYHLERFYWLMCLLSSLNFFHYL FWANRYKYRTTSPC" mRNA join(17615043..17615135,17615239..17615344, 17615578..17615795,17616771..17617211,17617295..17618657) /locus_tag="TCM_013822" /product="Nitrate transporter 1:2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014070" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011810t1" /inference="similar to AA sequence:Phytozome:Glyma05g01380.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3394t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3394t2" CDS join(17615133..17615135,17615239..17615344, 17615578..17615795,17616771..17617211,17617295..17618263) /locus_tag="TCM_013822" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011810t1" /codon_start=1 /product="Nitrate transporter 1:2 isoform 2" /protein_id="EOY21716.1" /db_xref="Phytozome:Glyma05g01380.1" /db_xref="TAIR:AT1G69850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMV8" /translation="MEEAHQSNKWEGYVDWRNRPAMRGRHGGMLAASFVLAVEILENL AFLANASNLVLYLSKFMHYSLSSSANIVTSFMGTAFLLALLGGFLADAFFTTYRLYLT SAAIEFMGLLTLTVQAHIPSLKPPTCALASTEIPCQKVGGQKAALLFTGLYLVALGVG GIKGSLPPHGAEQFDETTPQGRKQRSSFFNYYVFCLSCGALIAVTFVVWIEDNKGWQW GFGIATATILISIPVFLLGSPIYRTKIPAGSPITTMFEVLAAAIYNNCKSKNPSKAVM GMEASPSDRTETSEGEESNTKAMVPSRTPTEDLKFLNKAIKRKPVKPMLDCTVKQVEE VKEVLKILPIFTCTIMLNCCLAQLSTFSVQQAATMNTKIGSLKVPPASLPIFPVIFMV ILAPTYNHVIIPFARKVTKTEIGITHLQRIGTGLVLSIIAMAVAALVETKRKKVAVES GLLNSADSLPITFLWIALQYLFLGSADLFSLVGMMEFFFTEAPTSMRSLATSLSWASL AMGYYFSSVLISIVNNVTSSFRLTPWLSGSNLNHYHLERFYWLMCLLSSLNFFHYLFW ANRYKYRTTSPC" CDS join(17615649..17615795,17616771..17617211, 17617295..17618263) /locus_tag="TCM_013822" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG011810t1" /codon_start=1 /product="Nitrate transporter 1:2 isoform 3" /protein_id="EOY21717.1" /db_xref="Phytozome:Glyma05g01380.1" /db_xref="TAIR:AT1G69850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMV8" /translation="MHYSLSSSANIVTSFMGTAFLLALLGGFLADAFFTTYRLYLTSA AIEFMGLLTLTVQAHIPSLKPPTCALASTEIPCQKVGGQKAALLFTGLYLVALGVGGI KGSLPPHGAEQFDETTPQGRKQRSSFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF GIATATILISIPVFLLGSPIYRTKIPAGSPITTMFEVLAAAIYNNCKSKNPSKAVMGM EASPSDRTETSEGEESNTKAMVPSRTPTEDLKFLNKAIKRKPVKPMLDCTVKQVEEVK EVLKILPIFTCTIMLNCCLAQLSTFSVQQAATMNTKIGSLKVPPASLPIFPVIFMVIL APTYNHVIIPFARKVTKTEIGITHLQRIGTGLVLSIIAMAVAALVETKRKKVAVESGL LNSADSLPITFLWIALQYLFLGSADLFSLVGMMEFFFTEAPTSMRSLATSLSWASLAM GYYFSSVLISIVNNVTSSFRLTPWLSGSNLNHYHLERFYWLMCLLSSLNFFHYLFWAN RYKYRTTSPC" gene complement(17620177..17621171) /locus_tag="TCM_013825" /note="dbxref CacaoGD:Thecc1EG013825" mRNA complement(join(17620177..17620642,17620743..17621171)) /locus_tag="TCM_013825" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014071" /inference="similar to AA sequence:Phytozome:GSVIVT01008063001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13638t00001" CDS complement(join(17620199..17620642,17620743..17620886)) /locus_tag="TCM_013825" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21720.1" /db_xref="Phytozome:GSVIVT01008063001" /db_xref="TAIR:AT1G74730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9NZ32" /translation="MAVSSPSPVAYLGRIQHANFLSATQPRFNPLFPAKKPLTIVSMA PKKKVNKFDPDWEKQWFGAGIFYEGSEDVEVDVFKNLEKKKVLSNVEKAGILSKAEEL GFTLSSIEKLGVFSKAEELGLLSLLEKTASVSPSTLASAALPALVAAVAAIVIIPDDS VGLVAAQAVLAGALVVGAAGLFVGSVVLGGLQEAD" mobile_element 17623022..17624713 /note="source:CACAO_M_E23583_F60_scaffold_4 1 1706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17626178..17627123) /note="source:CACAO_M_E49885_F60_scaffold_7 764 1712" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17628181..17631139 /locus_tag="TCM_013826" /note="dbxref CacaoGD:Thecc1EG013826" mRNA join(17628181..17628234,17628448..17628648, 17629097..17629217,17629425..17629516,17629668..17629764, 17630366..17631062) /locus_tag="TCM_013826" /product="SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018363t2" /inference="similar to AA sequence:Phytozome:Glyma17g10520.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03488t00001; inference alignment:Newbler:10:TSA:cgbaP1_g03488t00001" mRNA join(17628210..17628234,17628448..17628648, 17629097..17629217,17630366..17631139) /locus_tag="TCM_013826" /product="SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018363t2" /inference="similar to AA sequence:ricco:29822.m003472" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1901t4; inference alignment:Newbler:10:TSA:cgbaP1_g03488t00001" CDS join(17628460..17628648,17629097..17629217, 17629425..17629516,17629668..17629764,17630366..17630721) /locus_tag="TCM_013826" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG018363t2" /codon_start=1 /product="SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 1" /protein_id="EOY21721.1" /db_xref="Phytozome:Glyma17g10520.2" /db_xref="TAIR:AT5G62740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FM19" /translation="MGNLFCCIQVDQSTVAIKERFGRFDDVLEPGCHCLPWFLGSQLA GHLSLRLQQLDVRCETKTKDNVFVNVVASIQYRALADKASDAFYKLSNTRTQIQAYVF DVIRASVPKLNLDDVFEQKTEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRA MNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSV LGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRD GLLQAAHQ" CDS join(17628460..17628648,17629097..17629217, 17630366..17630721) /locus_tag="TCM_013826" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29822.m003472; paralog of Thecc1EG018363t2" /codon_start=1 /product="SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 2" /protein_id="EOY21722.1" /db_xref="TAIR:AT5G62740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RUM4" /translation="MGNLFCCIQVDQSTVAIKERFGRFDDVLEPGCHCLPWFLGSQLA GHLSLRLQQLDVRCETKTKDNVFVNVVASIQYRALADKASDAFYKLSNTRTQIQAYVF DAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSV NVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQA AHQ" gene complement(17631228..17633701) /locus_tag="TCM_013827" /note="dbxref CacaoGD:Thecc1EG013827" mRNA complement(join(17631228..17631749,17631953..17632179, 17632343..17632404,17633356..17633442,17633540..17633701)) /locus_tag="TCM_013827" /product="Porin/voltage-dependent anion-selective channel protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018364t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07210.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1446t7" CDS complement(join(17631443..17631749,17631953..17632179, 17632343..17632404,17633356..17633442,17633540..17633582)) /locus_tag="TCM_013827" /note="paralog of Thecc1EG018364t1" /codon_start=1 /product="Porin/voltage-dependent anion-selective channel protein, putative" /protein_id="EOY21723.1" /db_xref="Phytozome:POPTR_0012s07210.1" /db_xref="TAIR:AT3G01280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I304" /translation="MNPGLYFAIGKKARDLLYKDYAQRQPLQLRYQSFDWSFDFSCQI EEILPGVNTVFRVIIPDSGKAELQYLRDYVGFSAGVGLKANPATGFDPIANISGVIGS TLVSLGADLGFDITAGTLNKFSASLSLNTAFLIASLTLSDSFDSAKASFYRALNPPTR TAVAAELKHRFSEDATTLTVGAQHALFPLTLVKARMDTDGKVSAVLRQQVWQRFYVSI AGEMNLRDSNYIPRIGLSMALKP" mobile_element 17635675..17641271 /note="source:CACAO_on_E489_scaffold_3 1 5597" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(17642552..17643591) /locus_tag="TCM_013829" /note="dbxref CacaoGD:Thecc1EG013829" mRNA complement(join(17642552..17643224,17643466..17643591)) /locus_tag="TCM_013829" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3732t1" CDS complement(17642841..17643185) /locus_tag="TCM_013829" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21724.1" /translation="MGETADSKKHDDHKEKEKKHEKEEKHQGEDRDKEDKGEKEEKKK KKKDKDCKDKEDKEDGGKDEEKNPEDKKTPEKLRAKLQNIESKIQALTQKKEEVLKLL DEVEKAAVKPSG" gene complement(17644426..17650501) /locus_tag="TCM_013830" /note="dbxref CacaoGD:Thecc1EG013830" mRNA complement(join(17644426..17648475,17648720..17648801, 17650295..17650501)) /locus_tag="TCM_013830" /product="C2 calcium/lipid-binding plant phosphoribosyltransferase family protein" /inference="alignment:exonerate-protein:2:frave:gene25947" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025894t1" /inference="similar to AA sequence:ricco:30147.m014074" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3531t1" CDS complement(17644825..17647992) /locus_tag="TCM_013830" /note="dbxref ricco:30147.m014074; paralog of Thecc1EG025894t1" /codon_start=1 /product="C2 calcium/lipid-binding plant phosphoribosyltransferase family protein" /protein_id="EOY21725.1" /db_xref="TAIR:AT1G74720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSF7" /translation="MTTSSQQPPPQPPTTVRKVIVEVIDARDLLPKDGQGSSSPYVIA DFDGQKKRTSTKYRELNPVWNEPLEFTVSDPENMDVEELEIEVFNDKKFGNGSGRKNH FLGRVKLYGSQFARRGEEGLIYFPLEKKSVFSWIRGEIGLKICYYDEIVEDQPPPEEP SPQQQQQQSPQMEEPKPSPGLLVVEEGRVFEVPTAHMEFPHGVHGHGQGPIPCYPSSP VVVVEESPPHVVRVHEELPPQVEATALPPHMASGIPVSEVHFTVPEVRRMQSNRGERV RVLKRPHGDYLPKDIGGNKTQADNAAAAGAGGAERIHPFDLVEPMQYLFVKIVKARGL APNECPYVKIRTSSHYLKSKPTIYRPGEPTDSPEWRQVFALGYNKQESVTATLEISVW DAPTENFLGGVCFDLSDVPVREPPDSPLAPQWYRLETGAVDQNSGRVSGDIQLAVWIG TQNDDAFPEAWSSDAPYVAHTRSKVYQSPKLWYLRLTLIEAQDLQIAPNLPPLTVPEI RVKAQLGFQSVRSRRGNMNNHSMSVHWNEDLIFVAGEPLEDSLILLVEDRTNKEATVL GLVMIPLISIEQRIDERHVASKWYGLDGGAGGGGGPYGGRIHLRLCLEGGYHVLDEAA HVCSDFRPTAKQLWKPAIGILELGILGARGLLPMKTKGGGKGSTDAYCVAKYGKKWVR TRTVTDSFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEDKPDSRIGKIRIRIS TLESNKVYTNSYPLLVLTRMGLKKMGEIELAVRFACPSLLPDTCSAYGQPLLPRMHYL RPLGVAQQEALRGAATKMVAQWLARSEPPLGQEVVRYMLDADSHTWSMRKSKANWFRI VAVLAWAVGLAKWLDDIRRWRNPVTTVLVHVLYLVLVWYPDLIVPTGFLYVVLIGVWY YRFRPKIPAGMDIRLSQAETVDPDELDEEFDTIPSSKPPELIRARYDRLRILAGRVQT VLGDFATQGERVQALVSWRDPRATKLFIGVCLAITLILYVVPPKMVVVALGFYYLRHP MFRDPMPPASLNFFRRLPSLSDRLM" gene complement(17650663..17652082) /locus_tag="TCM_013831" /note="dbxref CacaoGD:Thecc1EG013831" mRNA complement(join(17650663..17651337,17651914..17652082)) /locus_tag="TCM_013831" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:POPTR_0015s07600.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4873t1" CDS complement(join(17650865..17651337,17651914..17652013)) /locus_tag="TCM_013831" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21726.1" /db_xref="Phytozome:POPTR_0015s07600.1" /translation="MDDVYGTRASEEFVPHWNWTEDSMGHYLSVHLPGFRKEEMMVGL AYPGYVTISGERTADDDKCIYFGQAMRLPENLDMNKIGQKFGGEMLCLTFPKRAEEKD NGIANPAAQELSNDENQRKHDEGHGHDANEEKSKQTDHHDRSFQREMRKKGSILERAI DLFKNNISLTIVLAFSLGLFVSRRFESNGE" gene complement(17652147..17653781) /locus_tag="TCM_013832" /note="dbxref CacaoGD:Thecc1EG013832" mRNA complement(join(17652147..17653120,17653640..17653781)) /locus_tag="TCM_013832" /product="HSP20-like chaperones superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014075" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013837t1" /inference="similar to AA sequence:ricco:30147.m014075" /note="quality class is medium, express is medium, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3700t1" CDS complement(join(17652615..17653120,17653640..17653754)) /locus_tag="TCM_013832" /note="dbxref ricco:30147.m014075; paralog of Thecc1EG013837t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein, putative" /protein_id="EOY21727.1" /translation="MANLGGLRRSANRIAEKFVPTSDWTQDAKGNYLFVDLPGFKKEE LRLELASTGHIKISGERVVNENKSIYFEETFALPENSDMDNISGKFDGDFLHVTVPRR PVVEEKKPEDDEITRNENGNRTGEKTSVQEEPNNSGENDQSKHEGGRRDNEEKRDISK GTNYHRLPLEMAMKFLKKNLGVVLSVVIAFSIGMLVCRTFESSAAE" mobile_element complement(17653154..17653327) /note="source:scaffold_8_CACTA_0858 14557 14733" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17653245..17653596) /note="source:INTACT267_F13_scaffold_2-int 10193 10640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17655971..17659006) /note="source:INTACT481_F226_scaffold_1-int 8447 11427" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17659424..17660320) /note="source:INTACT697_F302_scaffold_2-int 1892 2750" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17660416..17660626) /note="source:CACAO_M_E22974_F302_scaffold_4 1691 1901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17660464..17660805 /note="source:CACAO_M_S_E7818_F60_scaffold_2 19647 19994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17660793..17660877 /note="source:CACAO_M_S_E17777_F2_scaffold_3 6921 7006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17660887..17663025 /note="source:CACAO_M_E22348_F13_scaffold_3 426 2546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17661026..17670752) /note="source:INTACT267_F13_scaffold_2-int 1 9789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17675213..17676408 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3533 4609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17676831..17677875 /note="source:CACAO_M_E43672_F60_scaffold_5 18482 19503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17677958..17681292 /note="source:CACAO_M_E22416_F207_scaffold_3 1 3335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17681325..17681455) /note="source:CACAO_M_E13038_F22_scaffold_3 12474 12615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17681449..17681647) /note="source:CACAO_M_S_E14649_F328_scaffold_2 11106 11302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17681639..17683106 /note="source:INTACT215_F33_scaffold_4-int 8035 9503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17690201..17692799 /note="source:INTACT670_F33_scaffold_3-int 340 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17692763..17693003) /note="source:CACAO_M_S_E14649_F328_scaffold_2 1101 1309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17693004..17702000 /note="source:CACAO_M_E22420_F86_scaffold_3 1 8997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17702001..17703100) /note="source:CACAO_M_S_E14649_F328_scaffold_2 2 1105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17702985..17703118 /note="source:INTACT266_F12_scaffold_7-int 5022 5156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17703104..17703704 /note="source:CACAO_M_E43672_F60_scaffold_5 19587 20189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17703908..17703991) /note="source:INTACT236_F12_scaffold_10-int 8854 8935" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17707855..17716861) /locus_tag="TCM_013837" /note="dbxref CacaoGD:Thecc1EG013837" mRNA complement(join(17707855..17708562,17709048..17709196, 17716749..17716861)) /locus_tag="TCM_013837" /product="HSP20-like chaperones superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400043978.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013832t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07190.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3715t1" CDS complement(join(17708027..17708562,17709048..17709165)) /locus_tag="TCM_013837" /note="paralog of Thecc1EG013832t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein, putative" /protein_id="EOY21728.1" /db_xref="Phytozome:POPTR_0012s07190.1" /translation="MAFKDRSRRWPSHIAEKFVPPSFWTEDARGNYLLYIVLPGFKHE EVRIELPSAGHIRIEGEKIVNENKCIYIDQTFPLPENSDQDNILGKFEGERLYVTVPK ILAAEQSEDEDSRENDENDNSTAEESNSNDENQRKHEQSHGAIQRHDSNKKGKRNETC RVASFPKEIVKKWNKEDNPLEMAIKCLKRNKGLVLSVVISFSLGVWVSKLFINNGEI" mobile_element 17710590..17711916 /note="source:CACAO_M_S_E31635_F14_scaffold_3 1733 2987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17712034..17713389 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3314 4707" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17715106..17718900 /locus_tag="TCM_013839" /note="dbxref CacaoGD:Thecc1EG013839" mRNA join(17715106..17715240,17716798..17717052, 17718864..17718900) /locus_tag="TCM_013839" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(17715165..17715240,17716798..17716976) /locus_tag="TCM_013839" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21729.1" /translation="MLGRVQCCKRCGLRYGASLGHSFPFAMCKQVGVHWDVSEELLHP KLPIDLNLILRQSQTSTGGCSSSTHHLPPPRLRHQQLSMT" mobile_element complement(17717183..17720202) /note="source:CACAO_M_E49195_F17_scaffold_6 18 3055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17726218..17726550 /note="source:CACAO_M_S_E118676_F14_scaffold_9 1 333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17726569..17727313 /note="source:INTACT288_F14_scaffold_2-int 5147 5886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17727314..17728391) /note="source:CACAO_M_E11828_F15_scaffold_2 1720 2798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17729690..17730174 /note="source:CACAO_M_E294_F134_scaffold_1 9599 10083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17730170..17732091) /note="source:INTACT688_F14_scaffold_11-int 2400 4319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17732092..17733497 /note="source:CACAO_M_E13984_F9_scaffold_3 1 1411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17733498..17736139 /note="source:CACAO_M_E22429_F345_scaffold_3 1 2642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17736140..17736173) /note="source:CACAO_M_E4783_F9_scaffold_2 10520 10553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17736170..17738464 /note="source:CACAO_M_S_E118676_F14_scaffold_9 10565 12947" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17740144..17742541 /locus_tag="TCM_013841" /note="dbxref CacaoGD:Thecc1EG013841" mRNA join(17740144..17740707,17740937..17741588, 17741695..17741937,17742125..17742541) /locus_tag="TCM_013841" /product="Pectate lyase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011348001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011798t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s07590.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3408t1" CDS join(17740517..17740707,17740937..17741588, 17741695..17741937,17742125..17742343) /locus_tag="TCM_013841" /note="paralog of Thecc1EG011798t1" /codon_start=1 /product="Pectate lyase family protein" /protein_id="EOY21730.1" /db_xref="Phytozome:POPTR_0015s07590.1" /db_xref="TAIR:AT3G01270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EHZ3" /translation="MKVVKTVLLLGLVLVAVSPIVKANIGEFDEVWQKRAEEAKKAAL RAYEPNPEKVTDNLNKETGKALKGSNSTRRNLGRYRGPCLATNPIDRCWRCDPHWAEN RKKLATCVLGFGRRTTGGKDGRFYVVTDPSDNDMINPKPGTIRHAVIQKEPLWIIFAH DMVIRLNEELIMTSDKTIDGRGANVHFFRGAQITLQYIQNVIIHGIHIRLSVEANGGM IRDSVDHFGFRTKSDGDGISIFGSHNIWIDHVSMSRCSDGLIDVIQASTAITISNCHF TDHNDVMLFGASDSFSDDKIMQVTVAFNHFGQGLVQRMPRCRWGFIHVVNNDYTHWLM YAIGGSNQPTILSQGNRFIAPPNIACKEVTKREYAPESEWKSWNWRSENDLMMNGAFF VQSGSPIGRGNRQDVIKAKPGTFVTRLTRFSGALHCFKNKPC" gene complement(17742832..17751320) /locus_tag="TCM_013842" /note="dbxref CacaoGD:Thecc1EG013842" mRNA complement(join(17742832..17743777,17744031..17744123, 17744330..17744427,17745479..17745563,17745815..17745925, 17746475..17746532,17746672..17746790,17747489..17747557, 17747634..17747708,17747811..17747957,17748069..17748185, 17748283..17748400,17749173..17749417,17750628..17750816, 17750952..17751164)) /locus_tag="TCM_013842" /product="Isochorismate synthase 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014077" /inference="similar to AA sequence:ricco:30147.m014077" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3443t4" mRNA complement(join(17742845..17743547,17743705..17743777, 17744031..17744123,17744330..17744427,17745479..17745563, 17745815..17745925,17746475..17746532,17746672..17746790, 17747489..17747557,17747634..17747708,17747811..17747957, 17748069..17748185,17748283..17748400,17749173..17749417, 17750628..17750816,17750952..17751320)) /locus_tag="TCM_013842" /product="Isochorismate synthase 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014077" /inference="similar to AA sequence:ricco:30147.m014077" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b013370t1a2; alternateUTRof:Thecc1EG013842t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3443t4" mRNA complement(join(17742845..17743476,17743705..17743777, 17744031..17744427,17745479..17745563,17745815..17745925, 17746475..17746532,17746672..17746790,17747489..17747557, 17747634..17747708,17747811..17747957,17748069..17748185, 17748283..17748400,17749173..17749417,17750628..17750816, 17750952..17751320)) /locus_tag="TCM_013842" /product="Isochorismate synthase 2 isoform 5" /inference="alignment:exonerate- protein:2:ricco:30147.m014077" /inference="similar to AA sequence:ricco:30147.m014077" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b013370t1a3; alternateUTRof:Thecc1EG013842t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3443t4" mRNA complement(join(17742845..17743547,17743705..17743777, 17744031..17744427,17745479..17745563,17745815..17745925, 17746475..17746532,17746672..17746790,17747489..17747557, 17747634..17747708,17747811..17747957,17748069..17748185, 17748283..17748400,17749173..17749417,17750628..17750816, 17750952..17751320)) /locus_tag="TCM_013842" /product="Isochorismate synthase 2 isoform 5" /inference="alignment:exonerate- protein:2:ricco:30147.m014077" /inference="similar to AA sequence:ricco:30147.m014077" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b013370t1a4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3443t4" mRNA complement(join(17743169..17743476,17743705..17743777, 17744031..17744125,17744330..17744427,17745479..17745563, 17745815..17745925,17746475..17746532,17746672..17746790, 17747489..17747557,17747634..17747708,17747811..17747957, 17748069..17748185,17748283..17748400,17749173..17749417, 17750628..17750816,17750952..17751118)) /locus_tag="TCM_013842" /product="Isochorismate synthase 2 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014077" /inference="similar to AA sequence:ricco:30147.m014077" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3443t3; alternateUTRof:Thecc1EG013842t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3443t4" mRNA complement(join(17743169..17743547,17743705..17743780, 17744031..17744125,17744330..17744427,17745479..17745563, 17745815..17745925,17746475..17746532,17746672..17746790, 17747489..17747557,17747634..17747708,17747811..17747957, 17748069..17748185,17748283..17748400,17749173..17749417, 17750628..17750816,17750952..17751118)) /locus_tag="TCM_013842" /product="Isochorismate synthase 2 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014077" /inference="similar to AA sequence:ricco:30147.m014077" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3443t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3443t4" CDS complement(join(17743739..17743777,17744031..17744123, 17744330..17744427,17745479..17745563,17745815..17745925, 17746475..17746532,17746672..17746790,17747489..17747557, 17747634..17747708,17747811..17747957,17748069..17748185, 17748283..17748400,17749173..17749417,17750628..17750816, 17750952..17751074)) /locus_tag="TCM_013842" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014077" /codon_start=1 /product="Isochorismate synthase 2 isoform 1" /protein_id="EOY21731.1" /db_xref="TAIR:AT1G18870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S7H8" /translation="MAATGAGRHYVARFVDSELTKCTLSYSQHSSCRQSIQVFHNKFQ VCTLSMNGCQGDPKLPVGTIETRTLAAVPSPDLAMDRLNLAIGDLKYSPPPFSSGIIR LQVPIQQRIEAIEWLHAQNQILPRCFFSGRRSRANGANLLVDMTNGNGHNSFGQNLLS VAGVGSAVFFRQLHPFSYDDWRSITRFLSLKCPLIRAYGAIRFDARANISREWEAFGS FYFTVPQVEFDELEGSSILAVTVAWDNALSWTWDEAIDSLEATTHQVASVVVMLRKEA SGELILSNNHVPNKTHWDLAVKRALQTINRSSSPLIKVVLARSSRVLTATDIDPITWL ACLQVEGENAYQFCLQPPNAPAFIGNTPEQLFHRKWLSISSEAMAGTRARGGSRTLDL QIEHDLLSSPKDHLEFTIVRESIQNKLESVCDRVVVEPKKTVRKLRRIQHLFAQLAGN LKREDDEFEILSYLHPTPAVCGFPTETARLFISETEMFDRGMYAGPVGWFGGGESEFA VGIRSALVEKDLGALIYAGTGIVEGSNPSLEWDELELKTSQFTKLLQLEVPWR" CDS complement(join(17743739..17743777,17744031..17744123, 17744330..17744427,17745479..17745563,17745815..17745925, 17746475..17746532,17746672..17746790,17747489..17747557, 17747634..17747708,17747811..17747957,17748069..17748185, 17748283..17748400,17749173..17749417,17750628..17750816, 17750952..17751074)) /locus_tag="TCM_013842" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014077" /codon_start=1 /product="Isochorismate synthase 2 isoform 1" /protein_id="EOY21732.1" /db_xref="TAIR:AT1G18870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S7H8" /translation="MAATGAGRHYVARFVDSELTKCTLSYSQHSSCRQSIQVFHNKFQ VCTLSMNGCQGDPKLPVGTIETRTLAAVPSPDLAMDRLNLAIGDLKYSPPPFSSGIIR LQVPIQQRIEAIEWLHAQNQILPRCFFSGRRSRANGANLLVDMTNGNGHNSFGQNLLS VAGVGSAVFFRQLHPFSYDDWRSITRFLSLKCPLIRAYGAIRFDARANISREWEAFGS FYFTVPQVEFDELEGSSILAVTVAWDNALSWTWDEAIDSLEATTHQVASVVVMLRKEA SGELILSNNHVPNKTHWDLAVKRALQTINRSSSPLIKVVLARSSRVLTATDIDPITWL ACLQVEGENAYQFCLQPPNAPAFIGNTPEQLFHRKWLSISSEAMAGTRARGGSRTLDL QIEHDLLSSPKDHLEFTIVRESIQNKLESVCDRVVVEPKKTVRKLRRIQHLFAQLAGN LKREDDEFEILSYLHPTPAVCGFPTETARLFISETEMFDRGMYAGPVGWFGGGESEFA VGIRSALVEKDLGALIYAGTGIVEGSNPSLEWDELELKTSQFTKLLQLEVPWR" CDS complement(join(17744108..17744125,17744330..17744427, 17745479..17745563,17745815..17745925,17746475..17746532, 17746672..17746790,17747489..17747557,17747634..17747708, 17747811..17747957,17748069..17748185,17748283..17748400, 17749173..17749417,17750628..17750816,17750952..17751074)) /locus_tag="TCM_013842" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014077" /codon_start=1 /product="Isochorismate synthase 2 isoform 3" /protein_id="EOY21733.1" /db_xref="TAIR:AT1G18870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S7H8" /translation="MAATGAGRHYVARFVDSELTKCTLSYSQHSSCRQSIQVFHNKFQ VCTLSMNGCQGDPKLPVGTIETRTLAAVPSPDLAMDRLNLAIGDLKYSPPPFSSGIIR LQVPIQQRIEAIEWLHAQNQILPRCFFSGRRSRANGANLLVDMTNGNGHNSFGQNLLS VAGVGSAVFFRQLHPFSYDDWRSITRFLSLKCPLIRAYGAIRFDARANISREWEAFGS FYFTVPQVEFDELEGSSILAVTVAWDNALSWTWDEAIDSLEATTHQVASVVVMLRKEA SGELILSNNHVPNKTHWDLAVKRALQTINRSSSPLIKVVLARSSRVLTATDIDPITWL ACLQVEGENAYQFCLQPPNAPAFIGNTPEQLFHRKWLSISSEAMAGTRARGGSRTLDL QIEHDLLSSPKDHLEFTIVRESIQNKLESVCDRVVVEPKKTVRKLRRIQHLFAQLAGN LKREDDEFEILSYLHPTPAVCGFPTETARLFISETEMFDRGMYAGPVGWFGGGESEFA VGIRSALVEKRILVH" CDS complement(join(17744108..17744125,17744330..17744427, 17745479..17745563,17745815..17745925,17746475..17746532, 17746672..17746790,17747489..17747557,17747634..17747708, 17747811..17747957,17748069..17748185,17748283..17748400, 17749173..17749417,17750628..17750816,17750952..17751074)) /locus_tag="TCM_013842" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m014077" /codon_start=1 /product="Isochorismate synthase 2 isoform 3" /protein_id="EOY21734.1" /db_xref="TAIR:AT1G18870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S7H8" /translation="MAATGAGRHYVARFVDSELTKCTLSYSQHSSCRQSIQVFHNKFQ VCTLSMNGCQGDPKLPVGTIETRTLAAVPSPDLAMDRLNLAIGDLKYSPPPFSSGIIR LQVPIQQRIEAIEWLHAQNQILPRCFFSGRRSRANGANLLVDMTNGNGHNSFGQNLLS VAGVGSAVFFRQLHPFSYDDWRSITRFLSLKCPLIRAYGAIRFDARANISREWEAFGS FYFTVPQVEFDELEGSSILAVTVAWDNALSWTWDEAIDSLEATTHQVASVVVMLRKEA SGELILSNNHVPNKTHWDLAVKRALQTINRSSSPLIKVVLARSSRVLTATDIDPITWL ACLQVEGENAYQFCLQPPNAPAFIGNTPEQLFHRKWLSISSEAMAGTRARGGSRTLDL QIEHDLLSSPKDHLEFTIVRESIQNKLESVCDRVVVEPKKTVRKLRRIQHLFAQLAGN LKREDDEFEILSYLHPTPAVCGFPTETARLFISETEMFDRGMYAGPVGWFGGGESEFA VGIRSALVEKRILVH" CDS complement(join(17744285..17744427,17745479..17745563, 17745815..17745925,17746475..17746532,17746672..17746790, 17747489..17747557,17747634..17747708,17747811..17747957, 17748069..17748185,17748283..17748400,17749173..17749417, 17750628..17750816,17750952..17751074)) /locus_tag="TCM_013842" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30147.m014077" /codon_start=1 /product="Isochorismate synthase 2 isoform 5" /protein_id="EOY21735.1" /db_xref="TAIR:AT1G18870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S7H8" /translation="MAATGAGRHYVARFVDSELTKCTLSYSQHSSCRQSIQVFHNKFQ VCTLSMNGCQGDPKLPVGTIETRTLAAVPSPDLAMDRLNLAIGDLKYSPPPFSSGIIR LQVPIQQRIEAIEWLHAQNQILPRCFFSGRRSRANGANLLVDMTNGNGHNSFGQNLLS VAGVGSAVFFRQLHPFSYDDWRSITRFLSLKCPLIRAYGAIRFDARANISREWEAFGS FYFTVPQVEFDELEGSSILAVTVAWDNALSWTWDEAIDSLEATTHQVASVVVMLRKEA SGELILSNNHVPNKTHWDLAVKRALQTINRSSSPLIKVVLARSSRVLTATDIDPITWL ACLQVEGENAYQFCLQPPNAPAFIGNTPEQLFHRKWLSISSEAMAGTRARGGSRTLDL QIEHDLLSSPKDHLEFTIVRESIQNKLESVCDRVVVEPKKTVRKLRRIQHLFAQLAGN LKREDDEFEILSYLHPTPAVCGFPTETARLFISETEMFDRGMYAGPVGWFGGGESEFA VGIRSALVEKVSTKASLKLHNILY" CDS complement(join(17744285..17744427,17745479..17745563, 17745815..17745925,17746475..17746532,17746672..17746790, 17747489..17747557,17747634..17747708,17747811..17747957, 17748069..17748185,17748283..17748400,17749173..17749417, 17750628..17750816,17750952..17751074)) /locus_tag="TCM_013842" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30147.m014077" /codon_start=1 /product="Isochorismate synthase 2 isoform 5" /protein_id="EOY21736.1" /db_xref="TAIR:AT1G18870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S7H8" /translation="MAATGAGRHYVARFVDSELTKCTLSYSQHSSCRQSIQVFHNKFQ VCTLSMNGCQGDPKLPVGTIETRTLAAVPSPDLAMDRLNLAIGDLKYSPPPFSSGIIR LQVPIQQRIEAIEWLHAQNQILPRCFFSGRRSRANGANLLVDMTNGNGHNSFGQNLLS VAGVGSAVFFRQLHPFSYDDWRSITRFLSLKCPLIRAYGAIRFDARANISREWEAFGS FYFTVPQVEFDELEGSSILAVTVAWDNALSWTWDEAIDSLEATTHQVASVVVMLRKEA SGELILSNNHVPNKTHWDLAVKRALQTINRSSSPLIKVVLARSSRVLTATDIDPITWL ACLQVEGENAYQFCLQPPNAPAFIGNTPEQLFHRKWLSISSEAMAGTRARGGSRTLDL QIEHDLLSSPKDHLEFTIVRESIQNKLESVCDRVVVEPKKTVRKLRRIQHLFAQLAGN LKREDDEFEILSYLHPTPAVCGFPTETARLFISETEMFDRGMYAGPVGWFGGGESEFA VGIRSALVEKVSTKASLKLHNILY" gene 17746896..17747453 /locus_tag="TCM_013843" /note="dbxref CacaoGD:Thecc1EG013843" mRNA 17746896..17747453 /locus_tag="TCM_013843" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4988t1" CDS 17747211..17747444 /locus_tag="TCM_013843" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21737.1" /translation="MESIINCSGVASGKGVLHTSQTLLSFYLSLNFSHVNLKSIPIKY HAIFILVGKILDKHFVKREEENMIIKIQKKAAE" mobile_element 17752542..17755520 /note="source:CACAO_on_S_E176_scaffold_5 1 2623" /mobile_element_type="transposon:TIR/Mutator" mobile_element 17754585..17755295 /note="source:scaffold_1_CACTA_0009 6349 7531" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17755296..17756265) /note="source:CACAO_on_E193_scaffold_6 8384 9325" /mobile_element_type="transposon:TIR/Mutator" mobile_element 17756266..17757329 /note="source:scaffold_1_CACTA_0009 7532 9305" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17757473..17757603 /note="source:CACAO_Mutator_E1998_scaffold_9 897 1026" /mobile_element_type="transposon:TIR/Mutator" gene complement(17757588..17772750) /locus_tag="TCM_013845" /note="dbxref CacaoGD:Thecc1EG013845" mRNA complement(join(17757588..17757887,17761808..17762479, 17762778..17762864,17763577..17763794,17765344..17765452, 17765921..17765965,17766191..17766295,17766471..17766521, 17768926..17768981,17769524..17769593,17770199..17770297, 17770396..17770508,17771351..17771510,17771607..17772750)) /locus_tag="TCM_013845" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014078" /inference="similar to AA sequence:Phytozome:GSVIVT01008051001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3517t5" mobile_element 17758126..17758173 /note="source:CACAO_Mutator_E1998_scaffold_9 6459 6506" /mobile_element_type="transposon:TIR/Mutator" mobile_element 17758278..17759903 /note="source:scaffold_1_CACTA_0009 9522 11159" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17759915..17760210 /note="source:CACAO_Mutator_E1998_scaffold_9 9655 10105" /mobile_element_type="transposon:TIR/Mutator" mobile_element 17760162..17760679 /note="source:scaffold_1_CACTA_0009 13297 13820" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17760639..17760686) /note="source:CACAO_Mutator_E1998_scaffold_9 2 56" /mobile_element_type="transposon:TIR/Mutator" mRNA complement(join(17761734..17762479,17762778..17762864, 17763595..17763794,17765344..17765452,17765921..17765965, 17766191..17766295,17766471..17766521,17768926..17768981, 17769524..17769593,17770199..17770297,17770396..17770508, 17771351..17771510,17771607..17772672)) /locus_tag="TCM_013845" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014078" /inference="similar to AA sequence:Phytozome:GSVIVT01008051001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc806t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3517t5" mRNA complement(join(17761734..17762479,17762778..17762875, 17763577..17763794,17765344..17765452,17765921..17765965, 17766191..17766295,17766471..17766521,17768926..17768981, 17769524..17769593,17770199..17770297,17770396..17770508, 17771351..17771510,17771607..>17772307)) /locus_tag="TCM_013845" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014078" /inference="similar to AA sequence:Phytozome:GSVIVT01008051001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1346t2_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3517t5" CDS complement(join(17762315..17762479,17762778..17762864, 17763595..17763794,17765344..17765452,17765921..17765965, 17766191..17766295,17766471..17766521,17768926..17768981, 17769524..17769593,17770199..17770297,17770396..17770508, 17771351..17771510,17771607..17772578)) /locus_tag="TCM_013845" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 3" /protein_id="EOY21740.1" /db_xref="Phytozome:GSVIVT01008051001" /translation="MDQYYHHQPHNQWGQPPLPPPPQQPSICPVCSIPHLPFCPPYAP YNHQNPNYPPQPPHYARPGFDPYQPPLPPTPPPPPPAVPTHTPPYIDGFSDPRSWHQN PNYGYDYGAAGGGGEVDRSYKRPRVDEFGSGPGSGWTLSDDERRLKLIRDHGGASLSG CNQENIYFQNNINNNNKATPMPPRLTEMYNIEDSLNNDNDYSNNYDYNQQQIQHKDLV PAAVNNWQGYEERIGGYLSQPGGSNMAQPPPPPLPASPPPPLPVEPPMQNHSSSEFKA FSLSPNSSFSLFPIPVSSSVTAHSTYPVVPEPYYQGKPRHASGGFNGEDPQVIHRTVQ YVGIPPKPLCSDKPKFVNASELFKMPHRASRPDHIVIILRGLPGSGKSYLAKMLRDLE VQNGGDAPRIHSMDDYFMTEVEKDEETDSKSSSSARSKKAMKKTVMEYCYEPEMEGAY RESMLKAFKRTLEDGIFSFVIVDDRNLRVADFAQFWAIGKRSGYEVYVLEATYKDPVG CAARNVHGFTLDDIQQMAEQWEEAPSLYLHLDIKSLFHGDDLKESGIQEVDMDVEDGD REEGLSGQQEQKPEKTKSLAVGDHVLGGFQDLDSSKNDKRRDAEGDHPVEVKELSRSK WSNDLDEDEIEGPEAIKGNLNAFSGLIQAYKKKGKSGGDTGFSIGAAKKAKMLSLVIG PGAGYNLKSNPLPIEESHTSNSSGTLKKQSSFQERLRAEQDSFKAIFDRRKRIGRLDL DED" CDS complement(join(17762315..17762479,17762778..17762864, 17763577..17763794,17765344..17765452,17765921..17765965, 17766191..17766295,17766471..17766521,17768926..17768981, 17769524..17769593,17770199..17770297,17770396..17770508, 17771351..17771510,17771607..17772578)) /locus_tag="TCM_013845" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 1" /protein_id="EOY21738.1" /db_xref="Phytozome:GSVIVT01008051001" /translation="MDQYYHHQPHNQWGQPPLPPPPQQPSICPVCSIPHLPFCPPYAP YNHQNPNYPPQPPHYARPGFDPYQPPLPPTPPPPPPAVPTHTPPYIDGFSDPRSWHQN PNYGYDYGAAGGGGEVDRSYKRPRVDEFGSGPGSGWTLSDDERRLKLIRDHGGASLSG CNQENIYFQNNINNNNKATPMPPRLTEMYNIEDSLNNDNDYSNNYDYNQQQIQHKDLV PAAVNNWQGYEERIGGYLSQPGGSNMAQPPPPPLPASPPPPLPVEPPMQNHSSSEFKA FSLSPNSSFSLFPIPVSSSVTAHSTYPVVPEPYYQGKPRHASGGFNGEDPQVIHRTVQ YVGIPPKPLCSDKPKFVNASELFKMPHRASRPDHIVIILRGLPGSGKSYLAKMLRDLE VQNGGDAPRIHSMDDYFMTEVEKDEETDSKSSSSARSKKAMKKTVMEYCYEPEMEGAY RESMLKAFKRTLEDGIFSFVIVDDRNLRVADFAQFWAIGKRSGYEVYVLEATYKDPVG CAARNVHGFTLDDIQQMAEQWEEAPSLYLHLDIKSLFHGDDLKESGIQEVDMDVEDGD REEGLSGQQEQKPEKTKSLAVGDHVLGGFQDLDSSKNDKRRDAEGDHPVEVKELSRSK WSNDLDEDEIEGPEAIKGNLNAFSGLIQAYKKKGKSVHWSDQGGDTGFSIGAAKKAKM LSLVIGPGAGYNLKSNPLPIEESHTSNSSGTLKKQSSFQERLRAEQDSFKAIFDRRKR IGRLDLDED" CDS complement(join(17762840..17762875,17763577..17763794, 17765344..17765452,17765921..17765965,17766191..17766295, 17766471..17766521,17768926..17768981,17769524..17769593, 17770199..17770297,17770396..17770508,17771351..17771510, 17771607..>17772305)) /locus_tag="TCM_013845" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2" /protein_id="EOY21739.1" /db_xref="Phytozome:GSVIVT01008051001" /db_xref="TAIR:AT5G62760.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTA1" /translation="GFSDPRSWHQNPNYGYDYGAAGGGGEVDRSYKRPRVDEFGSGPG SGWTLSDDERRLKLIRDHGGASLSGCNQENIYFQNNINNNNKATPMPPRLTEMYNIED SLNNDNDYSNNYDYNQQQIQHKDLVPAAVNNWQGYEERIGGYLSQPGGSNMAQPPPPP LPASPPPPLPVEPPMQNHSSSEFKAFSLSPNSSFSLFPIPVSSSVTAHSTYPVVPEPY YQGKPRHASGGFNGEDPQVIHRTVQYVGIPPKPLCSDKPKFVNASELFKMPHRASRPD HIVIILRGLPGSGKSYLAKMLRDLEVQNGGDAPRIHSMDDYFMTEVEKDEETDSKSSS SARSKKAMKKTVMEYCYEPEMEGAYRESMLKAFKRTLEDGIFSFVIVDDRNLRVADFA QFWAIGKRSGYEVYVLEATYKDPVGCAARNVHGFTLDDIQQMAEQWEEAPSLYLHLDI KSLFHGDDLKESGIQEVDMDVEDGDREEGLSGQQEQKPEKTKSLAVGDHVLGGFQDLD SSKNDKRRDAEGDHPVEVKELSRSKWSNDLDEDEIEGPEAIKGNLNAFSGLIQAYKKK GKSVHWSDQLFFRAVTLDSQ" mobile_element complement(17765150..17765248) /note="source:INTACT296_F13_scaffold_9-int 13162 13261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17765189..17765309 /note="source:INTACT296_F13_scaffold_9-int 13157 13242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17773852..17774055 /note="source:CACAO_M_S_E66657_F76_scaffold_5 8286 8491" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17774764..17774969 /note="source:CACAO_M_S_E66657_F76_scaffold_5 3965 4192" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17775661..17777094) /note="source:CACAO_M_E59164_F88_scaffold_9 2119 3509" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17777090..17777642 /note="source:CACAO_M_S_E4911_F76_scaffold_1 13716 14277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17778411..17781056 /note="source:CACAO_M_S_E31935_F231_scaffold_3 1 2646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17782875..17783060) /note="source:INTACT222_F33_scaffold_7-int 5595 5781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17784280..17785329 /note="source:INTACT85_F9_scaffold_4-int 29 1078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17787317..17787347 /note="source:CACAO_M_E59612_F33_scaffold_9 1 31" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17788271..17790072) /note="source:CACAO_M_E14761_F33_scaffold_3 1028 2828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17790073..17801062 /note="source:INTACT670_F33_scaffold_3-int 1 10990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17800988..17801072) /note="source:CACAO_M_E12297_F14_scaffold_3 13997 14081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17801058..17802092 /note="source:CACAO_M_E11597_F33_scaffold_2 1898 2936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17803634..17805486 /note="source:scaffold_3_CACTA_0382 296 2113" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17805549..17807946) /note="source:CACAO_M_E33933_F9_scaffold_4 1804 4196" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17807941..17808178) /note="source:CACAO_M_E53201_F9_scaffold_8 6764 7001" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17808027..17811580) /locus_tag="TCM_013849" /note="dbxref CacaoGD:Thecc1EG013849" mRNA complement(join(17808027..17808143,17810858..17811580)) /locus_tag="TCM_013849" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene00040" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018243t1" /inference="similar to AA sequence:Phytozome:Glyma01g20680.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc8292t1_G3" CDS complement(join(17808063..17808143,17810858..17811520)) /locus_tag="TCM_013849" /note="paralog of Thecc1EG018243t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21741.1" /db_xref="Phytozome:Glyma01g20680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AGW4" /translation="MLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRR CRSPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVG DHVFLKVSPTKGIMRFGKKGKLSPRYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHV SMLRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDRQVKKLRSKDVASVKVLWRNHT SEEMNLNVNFKRVMPVRVGNVYHYFDSKS" mobile_element 17810812..17811581 /note="source:CACAO_M_E72867_F9_scaffold_10 9617 10379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17823912..17824452) /note="source:CACAO_M_E53201_F9_scaffold_8 5021 5561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17824453..17826277) /note="source:INTACT558_F9_scaffold_9-int 2 1853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17829974..17830748 /note="source:CACAO_M_S_E4911_F76_scaffold_1 14298 15078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17834707..17834779 /note="source:CACAO_M_E14081_F316_scaffold_3 14457 14530" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17834773..17838026 /note="source:scaffold_5_CACTA_0612 8693 11920" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17837954..17838044) /note="source:CACAO_M_E1841_F5_scaffold_1 3101 3190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17839597..17840484 /note="source:scaffold_5_CACTA_0612 8692 9575" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17840937..17842057) /note="source:CACAO_M_E5899_F5_scaffold_2 20503 20962" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17847498..17853264) /locus_tag="TCM_013850" /note="dbxref CacaoGD:Thecc1EG013850" mRNA complement(join(17847498..17848508,17848963..17849139, 17849368..17849498,17849787..17849927,17850092..17850335, 17853235..17853264)) /locus_tag="TCM_013850" /product="12-oxophytodienoate reductase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s10180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036537t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s10180.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3663t1_C1" CDS complement(join(17847916..17848508,17848963..17849139, 17849368..17849498,17849787..17849927,17850092..17850198)) /locus_tag="TCM_013850" /note="paralog of Thecc1EG036537t1" /codon_start=1 /product="12-oxophytodienoate reductase 1" /protein_id="EOY21742.1" /db_xref="Phytozome:POPTR_0013s10180.1" /db_xref="TAIR:AT1G76680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYB8" /translation="MGVRAQTQLQEDKENGVSTIPLLTSFKMGRFNLSHRIVMPPLTR QRSYNNIPQPHAALYYSQRTTKGGLLITEATVVSESARGYKDTPGIWSKEQVEAWKPI VDAVHAKGGIFFCQIWHVGRASTYEYQPNGQAPVSSTSKQLMPQVLANATEPAKFSPP RRLRTDEIPLVINDFRVAARNAIEAGFDGVEIHGAHGYLLDQFMKDHINDRTDHYGGS LENRCRFALELVEAVANEIGADRVGIRLSPFATYLDSGDSNPTALGVYMAESLNKYGI VYCHMVEPRMKTAEESLECAETLLPMRKAFKGAFIVAGGYDKEDGNKAISENRTDLVA FGRLFLANPDLPRRFELDAPLTKHNRSTYCLSDPVVGYTDYSFLENTA" mobile_element complement(17854945..17855572) /note="source:CACAO_M_E86052_F15_scaffold_12 5758 6151" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17856037..17857168) /note="source:CACAO_M_E86052_F15_scaffold_12 4901 5506" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17857532..17858019) /note="source:CACAO_M_E86052_F15_scaffold_12 4119 4606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17859535..17862386 /note="source:CACAO_M_E22446_F15_scaffold_3 1 2823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17863771..17863856) /note="source:INTACT189_F49_scaffold_5-int 17784 17874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17865546..17865928 /note="source:CACAO_M_E49544_F328_scaffold_7 1 383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17865922..17868621) /note="source:CACAO_M_E53305_F328_scaffold_8 1 2686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17870051..17870239) /note="source:INTACT189_F49_scaffold_5-int 2761 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17876777..17889892 /locus_tag="TCM_013851" /note="dbxref CacaoGD:Thecc1EG013851" mRNA join(17876777..17877110,17881318..17881369, 17881781..17881868,17882076..17882227,17889629..17889892) /locus_tag="TCM_013851" /product="Uncharacterized protein" /note="quality class is medium-expresste, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage" CDS join(17876912..17877110,17881318..17881369, 17881781..17881868,17882076..17882162) /locus_tag="TCM_013851" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21743.1" /translation="MKLPQGFDIKEQCPHGYQLVCKLQKSVYDLKQASRHWNTKFTET LLQFGIVQSKSNYSSFTIRTNHGFVFFPFFFTSCFGQPYGGIAYIFIYESIKVKVSHL ELFNILSEGAKIANLKLGVYLHSLRWINLVRSPPHLGYH" mobile_element 17876968..17877028 /note="source:INTACT280_F60_scaffold_5-int 6322 6382" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17878118..17878273) /note="source:INTACT505_F28_scaffold_3-int 10760 10918" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17878319..17885204) /locus_tag="TCM_013852" /note="dbxref CacaoGD:Thecc1EG013852" mRNA complement(join(17878319..17878627,17882820..17882860, 17884800..17885204)) /locus_tag="TCM_013852" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023484t1" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage" mobile_element 17878534..17886886 /note="source:INTACT675_F28_scaffold_3-int 1 8353" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(17882837..17882860,17884800..17885177)) /locus_tag="TCM_013852" /note="paralog of Thecc1EG023484t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21744.1" /translation="MGFVHFLSVLQAQLRKMEKEPQRGLMYVEVLLNKKSTKVMLDTR ASNTFITLGEAKRYVFKVENDFRQMKAVNLSALVIMGNTKDVKIKIGYWEGKVNLTIA IIENFDFVLGLDFMMKAQAIPFLVGFLNWGI" gene complement(17886502..17889400) /locus_tag="TCM_013854" /note="dbxref CacaoGD:Thecc1EG013854" mRNA complement(join(17886502..17887100,17888174..17888300, 17889309..17889400)) /locus_tag="TCM_013854" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc8144t5" CDS complement(join(17886982..17887100,17888174..17888300, 17889309..17889317)) /locus_tag="TCM_013854" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21745.1" /translation="MKEQHPFSLVAFVSTGSELHRGCPALTLASQAVNLSLATTISST VGKWGLEVSINIWWLGEFSRVRKGDLKLRFIFGGIGSSHN" gene complement(17891054..17893274) /locus_tag="TCM_013855" /note="dbxref CacaoGD:Thecc1EG013855" mRNA complement(join(17891054..17891766,17892690..17893274)) /locus_tag="TCM_013855" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041336t1" /note="quality class is medium-utrpoor, express is strong, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.71 coverage" CDS complement(join(17891520..17891766,17892690..17892805)) /locus_tag="TCM_013855" /note="paralog of Thecc1EG041336t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21746.1" /translation="MDHIVSLIQQKYTKIKRDLILNSTSSETFCKRKNPASQRTIAQD FSCLGTWIMALLQHVDKADVEEIFSIMWALWKSRNVAIIKHERKDPRGVVELGTDMCF QYRQAMGGGRTESIDSCS" mobile_element complement(17893122..17894122) /note="source:INTACT135F_F90_scaffold_2-int 12972 13768" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(17894707..17897070) /locus_tag="TCM_013856" /note="dbxref CacaoGD:Thecc1EG013856" mRNA complement(join(17894707..17896378,17896492..17897070)) /locus_tag="TCM_013856" /product="F6A14.6 protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g008220.1" /inference="similar to AA sequence:ricco:30147.m014085" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00626t00003" CDS complement(17895180..17896355) /locus_tag="TCM_013856" /note="dbxref ricco:30147.m014085" /codon_start=1 /product="F6A14.6 protein, putative" /protein_id="EOY21747.1" /db_xref="TAIR:AT1G18850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9V4" /translation="MTLLDVVTKASDNIEPRSSQADHPIVLNPDDIFLKLKPDVENPN PTSLVSPLSGWAISPTDAKLIDLSKKFFTKLNRKLKDIHNFNKQEFLELLNPFLEKIK EKGGIFIGVDSNDSRYTSVLIEKVGFLMGRDVLSLILEACTSLEVWELLEALIVNGLV DHSCYSNLIINVAAKKKLDLLCLSVKHAHHLGSSELLCILKYFLCPPKDCNFSMVNVR KEWESQALLAIEKARIGKKSRLAKEASILLMVAHDGFSDAELCLHYLLASNNVDEVVL SSSLGKLSGKEMMNLIRYLGKWLRKYERFPQAIPCPKASSALGLKACDWVPKLEDVVK CLGFVLDENFSSLMLHPEFHEELKSIEGVVSSLAFEARFGSLMANVIEKLRAGDVQS" gene complement(17897110..17904705) /locus_tag="TCM_013857" /note="dbxref CacaoGD:Thecc1EG013857" mRNA complement(join(17897110..17897914,17898118..17898197, 17898337..17898447,17898545..17898754,17899724..17899813, 17899996..17900085,17900184..17900315,17901140..17901253, 17901348..17901452,17902242..17902325,17902617..17902730, 17903235..17903292,17903466..17903533,17903765..17903868, 17904127..17904206,17904514..17904674)) /locus_tag="TCM_013857" /product="Aldehyde dehydrogenase 12A1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008047001" /inference="similar to AA sequence:Phytozome:POPTR_0015s07550.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04837t00001" mRNA complement(join(17897115..17897914,17898118..17898197, 17898337..17898447,17898545..17898754,17899724..17899813, 17899996..17900085,17900184..17900315,17901140..17901253, 17901348..17901452,17902242..17902325,17902617..17902730, 17903235..17903292,17903466..17903533,17903765..17904004)) /locus_tag="TCM_013857" /product="Aldehyde dehydrogenase 12A1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008047001" /inference="similar to AA sequence:ricco:30147.m014086" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc461t3; inference alignment:Newbler:10:TSA:cgbaP2_g04837t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1069t4" mRNA complement(join(17897359..17897914,17898118..17898197, 17898337..17898447,17898545..17898754,17899724..17899813, 17899996..17900085,17900184..17900315,17901140..17901253, 17901348..17901452,17902242..17902325,17902617..17902730, 17903235..17903292,17903466..17903533,17903765..17903868, 17904127..17904206,17904514..17904705)) /locus_tag="TCM_013857" /product="Aldehyde dehydrogenase 12A1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008047001" /inference="similar to AA sequence:Phytozome:POPTR_0015s07550.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3630t2; alternateUTRof:Thecc1EG013857t1; inference alignment:Newbler:10:TSA:cgbaP2_g04837t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1069t4" CDS complement(join(17897776..17897914,17898118..17898197, 17898337..17898447,17898545..17898754,17899724..17899813, 17899996..17900085,17900184..17900315,17901140..17901253, 17901348..17901452,17902242..17902325,17902617..17902730, 17903235..17903292,17903466..17903533,17903765..17903868, 17904127..17904206,17904514..17904599)) /locus_tag="TCM_013857" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Aldehyde dehydrogenase 12A1 isoform 1" /protein_id="EOY21748.1" /db_xref="Phytozome:POPTR_0015s07550.1" /db_xref="TAIR:AT5G62530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZC3" /translation="MHRTVLQRELRSRASHKALAWVNSFNISRSVHSLPFTTVEAEGI SGSQPAEVQNLVQGKWTGSAAWNTLLDPLNGEPFIKVAEVDETGVQPFVESLSKCPKH GLHNPFKSPERYLLYGDISAKAAHMLSLPKVSDFFTRLIQRVSPKSYQQALGEVYVTR KFLENFSGDQVRFLARCFAVPGNHIGQQSHGYRWPYGPVAIITPFNFPLEIPVLQLMG ALYMGNKPILKVDSKVSIVMEQMMRLLHYCGLPVEDVDFINSDGKTMNKLLMEANPRM TLFTGSSRVAEKLAVDLKGCIKLEDAGFDWKILGPDVEEVDYVAWVCDQDAYACSGQK CSAQSILFMHENWSASSLIPKMKYLAERRKLADLTIGPVLTVTTEAMLEHKKKLLQIS GSKLLFGGEPLENHSIPPIYGALKPTAIYIPLEEILKDDNYELVTKEIFGPFQIITDY KKDQLPMVLDALERMHAHLTAAVVSNDPIFLQGVIGNTVNGTTYAGLRARTTGAPQNH WFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDFGPLPRDWEIPPST" CDS complement(join(17897776..17897914,17898118..17898197, 17898337..17898447,17898545..17898754,17899724..17899813, 17899996..17900085,17900184..17900315,17901140..17901253, 17901348..17901452,17902242..17902325,17902617..17902730, 17903235..17903292,17903466..17903533,17903765..17903868, 17904127..17904206,17904514..17904599)) /locus_tag="TCM_013857" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Aldehyde dehydrogenase 12A1 isoform 1" /protein_id="EOY21749.1" /db_xref="Phytozome:POPTR_0015s07550.1" /db_xref="TAIR:AT5G62530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZC3" /translation="MHRTVLQRELRSRASHKALAWVNSFNISRSVHSLPFTTVEAEGI SGSQPAEVQNLVQGKWTGSAAWNTLLDPLNGEPFIKVAEVDETGVQPFVESLSKCPKH GLHNPFKSPERYLLYGDISAKAAHMLSLPKVSDFFTRLIQRVSPKSYQQALGEVYVTR KFLENFSGDQVRFLARCFAVPGNHIGQQSHGYRWPYGPVAIITPFNFPLEIPVLQLMG ALYMGNKPILKVDSKVSIVMEQMMRLLHYCGLPVEDVDFINSDGKTMNKLLMEANPRM TLFTGSSRVAEKLAVDLKGCIKLEDAGFDWKILGPDVEEVDYVAWVCDQDAYACSGQK CSAQSILFMHENWSASSLIPKMKYLAERRKLADLTIGPVLTVTTEAMLEHKKKLLQIS GSKLLFGGEPLENHSIPPIYGALKPTAIYIPLEEILKDDNYELVTKEIFGPFQIITDY KKDQLPMVLDALERMHAHLTAAVVSNDPIFLQGVIGNTVNGTTYAGLRARTTGAPQNH WFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDFGPLPRDWEIPPST" CDS complement(join(17897776..17897914,17898118..17898197, 17898337..17898447,17898545..17898754,17899724..17899813, 17899996..17900085,17900184..17900315,17901140..17901253, 17901348..17901452,17902242..17902325,17902617..17902730, 17903235..17903292,17903466..17903533,17903765..17903884)) /locus_tag="TCM_013857" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014086" /codon_start=1 /product="Aldehyde dehydrogenase 12A1 isoform 3" /protein_id="EOY21750.1" /db_xref="TAIR:AT5G62530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZC3" /translation="MFLFLVQGKWTGSAAWNTLLDPLNGEPFIKVAEVDETGVQPFVE SLSKCPKHGLHNPFKSPERYLLYGDISAKAAHMLSLPKVSDFFTRLIQRVSPKSYQQA LGEVYVTRKFLENFSGDQVRFLARCFAVPGNHIGQQSHGYRWPYGPVAIITPFNFPLE IPVLQLMGALYMGNKPILKVDSKVSIVMEQMMRLLHYCGLPVEDVDFINSDGKTMNKL LMEANPRMTLFTGSSRVAEKLAVDLKGCIKLEDAGFDWKILGPDVEEVDYVAWVCDQD AYACSGQKCSAQSILFMHENWSASSLIPKMKYLAERRKLADLTIGPVLTVTTEAMLEH KKKLLQISGSKLLFGGEPLENHSIPPIYGALKPTAIYIPLEEILKDDNYELVTKEIFG PFQIITDYKKDQLPMVLDALERMHAHLTAAVVSNDPIFLQGVIGNTVNGTTYAGLRAR TTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDFGPLPRDWEIPPST" mRNA complement(join(17897891..17898197,17898337..17898447, 17898545..17898754,17899724..17899813,17899996..17900085, 17900184..17900315,17901140..17901253,17901348..17901452, 17902242..17902325,17902617..17902730,17903235..17903292, 17903466..17903533,17903765..>17903868)) /locus_tag="TCM_013857" /product="Aldehyde dehydrogenase 12A1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008047001" /inference="similar to AA sequence:ricco:30147.m014086" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc461t6; inference alignment:Newbler:10:TSA:cgbaP2_g04837t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1069t4" CDS complement(join(17898114..17898197,17898337..17898447, 17898545..17898754,17899724..17899813,17899996..17900085, 17900184..17900315,17901140..17901253,17901348..17901452, 17902242..17902325,17902617..17902730,17903235..17903292, 17903466..17903533,17903765..>17903866)) /locus_tag="TCM_013857" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m014086" /codon_start=1 /product="Aldehyde dehydrogenase 12A1 isoform 4" /protein_id="EOY21751.1" /db_xref="TAIR:AT5G62530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZC3" /translation="QGKWTGSAAWNTLLDPLNGEPFIKVAEVDETGVQPFVESLSKCP KHGLHNPFKSPERYLLYGDISAKAAHMLSLPKVSDFFTRLIQRVSPKSYQQALGEVYV TRKFLENFSGDQVRFLARCFAVPGNHIGQQSHGYRWPYGPVAIITPFNFPLEIPVLQL MGALYMGNKPILKVDSKVSIVMEQMMRLLHYCGLPVEDVDFINSDGKTMNKLLMEANP RMTLFTGSSRVAEKLAVDLKGCIKLEDAGFDWKILGPDVEEVDYVAWVCDQDAYACSG QKCSAQSILFMHENWSASSLIPKMKYLAERRKLADLTIGPVLTVTTEAMLEHKKKLLQ ISGSKLLFGGEPLENHSIPPIYGALKPTAIYIPLEEILKDDNYELVTKEIFGPFQIIT DYKKDQLPMVLDALERMHAHLTAAVVSNDPIFLQGVIGNTVNGTTYAGLRARTTGAPQ NHW" gene 17906193..17929531 /locus_tag="TCM_013858" /note="dbxref CacaoGD:Thecc1EG013858" mRNA join(17906193..17906755,17907152..17907622, 17916299..17916851,17917385..17918168,17919023..17919655, 17919746..17920519,17921635..17921717,17921823..17922190, 17925040..17925414,17929133..17929531) /locus_tag="TCM_013858" /product="Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023037t1" /inference="similar to AA sequence:Phytozome:Glyma15g32290.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage" mobile_element complement(17908394..17908462) /note="source:CACAO_M_E14113_F106_scaffold_3 13806 13874" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17908572..17908650 /note="source:CACAO_M_S_E64023_F13_scaffold_5 7856 7934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17908671..17908755 /note="source:CACAO_M_E43428_F369_scaffold_5 1263 1340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17911127..17911246) /note="source:CACAO_M_E3248_F5_scaffold_1 3643 3722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17913119..17914117) /note="source:scaffold_1_CACTA_0016 13518 14498" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17915773..17915955 /note="source:CACAO_M_E14227_F12_scaffold_3 1 152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17915961..17924518) /note="source:CACAO_M_E69358_F12_scaffold_9 240 8796" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(17916600..17916851,17917385..17918168, 17919023..17919655,17919746..17920519,17921635..17921717, 17921823..17922190,17925040..17925259) /locus_tag="TCM_013858" /note="paralog of Thecc1EG023037t1" /codon_start=1 /product="Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic, putative" /protein_id="EOY21752.1" /db_xref="Phytozome:Glyma15g32290.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HU05" /translation="MEIRNKNDSNQKKEMICYECKKLGHFKSECPLLKDETPKKNKKS KKAMLAAAWSDSDTSSSKTNDEKSEKRANICLMAQKDETEVELDLKEACSRAQLKKKQ PWYLDSGCSRHMTGHEMLFAQLDKRKGGTVSFRDNSKGRIHGISTVGKNFHTQISHVS LVKGLKHNLLSISQLCDKGFKVCFDSTKCEVIDVSTNKISFIGKRLKNMYVIFLEDLQ VNSEVCLVANAENDSWLWHKRLGYVSLHTMSKLIRKNLVVGLSDLQFENDRICDACQL GKQVRTSFKTKKIVSTSRPLELLHIDLFSPISTTSLEGKSYSFVIVDDYSRYTWVSFL AYKNDALQAFLKAEKEKIWIMAMQKELDQFTRSRVWSLVPRPSNHPIVCTKWFLRNKV DKQGNVVRNKPRLVAKGYNQEEGIDYDETFAPVASVEAIRLLLAFACFMNFKLFQMNV KSAFLNGLIQEEVYIEQSPGFEDFEKFDHVFKLHKALYGLKQAPRAWYERLSKFLVEK RYDRGNIDTILFTKRYLNDLIVVQIYVYDIVFGATNEALCKNFTKKMQERYTHDMLKK FDMLKLKSISAPMSPSTKLDLDEKGKDVNQKLYRGMIDFLLYLIASRPDIQFSVCLCA RFQSQPKETHLTAVKRIFRYLIDTQELGIWYSRDSTLNLVGYSDADFAGSRTDRKNTS GTCQFLGSMLVSWSSKKQNSVALLIAEAEYVSLGSSCAQILWIKQQLKDYGITMHNVP IYCDNTSAINISKNLVQHSRTKQMEIRHHFIRNHVVKNDIKIEFVNSLHQLDDIFIKP LNEDKFCEIRRNLGMITANIQCRSGNLSYISLQDLWLMEHAFNRKKGIWAKQYDMNLV KIRDQAIYYDSLVKMGYVLDGERFIKTPKTGSRKEHSLLAQSEEASSKYSNEVIFNLL MKIDGKLTDQGEKLQKVDEKITELENKLKEKENMPSELVVADNSSTSSTARNSLDVSP LNCELPFLFDELNQSGNLIKDSQAQFHWLLGLQEFEMISLNRYLEENLGESSEEFDLY EADKGLW" mobile_element 17922542..17922898 /note="source:INTACT111_F36_scaffold_10-int 8682 11005" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17922899..17924824 /note="source:INTACT47_F12_scaffold_3-int 9870 11827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17924769..17924840 /note="source:scaffold_1_CACTA_0016 1042 1110" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17926232..17928931) /note="source:INTACT724_F4_scaffold_8-int 6358 8985" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17926233..17929490) /note="source:CACAO_M_E4704_F345_scaffold_2 7283 10523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17929836..17929903 /note="source:CACAO_M_E57457_F12_scaffold_9 9081 9147" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17934390..17939944) /locus_tag="TCM_013859" /note="dbxref CacaoGD:Thecc1EG013859" mRNA complement(join(17934390..17934506,17938683..17938871, 17939770..17939944)) /locus_tag="TCM_013859" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(join(17938747..17938871,17939770..17939845)) /locus_tag="TCM_013859" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21753.1" /translation="MNSARLESSTSMDFESTPFMESEQSHFLYLMDQIMPIRALECLF ILEILIMKVECGYRRILYSHRT" gene 17944872..17949398 /locus_tag="TCM_013860" /note="dbxref CacaoGD:Thecc1EG013860" mRNA join(17944872..17945455,17945747..17945830, 17946789..17946866,17947319..17947834,17948009..17948122, 17948264..17949398) /locus_tag="TCM_013860" /product="WRKY DNA-binding protein 72, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018403t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008046001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc714t1" CDS join(17945336..17945455,17945747..17945830, 17946789..17946866,17947319..17947834,17948009..17948122, 17948264..17949190) /locus_tag="TCM_013860" /note="paralog of Thecc1EG018403t1" /codon_start=1 /product="WRKY DNA-binding protein 72, putative" /protein_id="EOY21754.1" /db_xref="Phytozome:GSVIVT01008046001" /db_xref="TAIR:AT5G15130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4A6" /translation="MEEDLIKRSDHGGAVKEEKRADSSGDEEAATGSREEVVAKVGNK RVYREDDDRKPSSPAQKDLSSSKQVSVKADTQRFSTEPDSMASSSSRKEQDSQLESAK AEMGEVREENQRLKMYLNRIMKDYQSLQMQFYDIVRQDAKRSTATTNNDHQEVEEPEL VSLTLGRFSSDSKTDDKNKTSSQGKEDERGKQGLSLGLDYKFEASKSDVDEPNPSPTN SSQEPKEEETWPPSKVLKTMRSGDDEILQQNPVKKARVCVRARCDTPTMNDGCQWRKY GQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCAEDMSILITTYEGTHNHPLPMSATAM ASTTSAAVSMLLSGSSSSSQPGSSIPSTANTIPANLQGLNFYLSDNSNSKFYLPNSSL SASSSHPTITLDLTSTLSSSSFPFNKFSSAYSTTARYPSTSLSFGSSESNTVSWGNGL LSYGSTQPYMKNQIGALNIGRPKTMENIIYQSFMQKNNLNPPHQPLPDTIAAATKAIT ADPNFQSALAAALTSIIGTGNNGGATPPTGDKLGQELNWGEKTPPVTSSCSQTVKGNG CATSFLNKSPSTTSQPGTLMFLPPSLPFSTPKSASASHGDTRNHSN" mobile_element complement(17949822..17950136) /note="source:scaffold_3_CACTA_0384 5218 5518" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17950137..17951039) /note="source:CACAO_M_E70109_F106_scaffold_10 411 2071" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17951040..17951805) /note="source:CACAO_M_E48654_F60_scaffold_6 423 1174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17951805..17952131) /note="source:CACAO_M_E5627_F4_scaffold_2 18332 18659" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17952359..17955513) /note="source:scaffold_3_CACTA_0384 1874 5085" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17958583..17961092) /note="source:INTACT676_F297_scaffold_3-int 7729 10220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17961134..17961201) /note="source:INTACT676_F297_scaffold_3-int 7049 7114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17962836..17962886) /note="source:INTACT609_F90_scaffold_2-int 6475 6527" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17962880..17965590) /note="source:CACAO_M_S_E109853_F60_scaffold_9 4820 7520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17968415..17969664 /note="source:CACAO_M_S_E4787_F60_scaffold_1 1 1252" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17969643..17972970) /note="source:INTACT676_F297_scaffold_3-int 7405 9715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17970944..17974678 /note="source:INTACT720_F313_scaffold_4-int 1170 4873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17973727..17976827) /note="source:INTACT904F_F49_scaffold_6-int 5720 8825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17976827..17977308 /note="source:CACAO_M_S_E109853_F60_scaffold_9 21021 21504" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17978373..17984998) /locus_tag="TCM_013864" /note="dbxref CacaoGD:Thecc1EG013864" mRNA complement(join(17978373..17978748,17979440..17980781, 17981620..17981700,17982258..17982461,17982578..17982874, 17983816..17983929,17984294..17984333,17984463..17984998)) /locus_tag="TCM_013864" /product="IQ-domain 28, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014091" /inference="similar to AA sequence:ricco:30147.m014091" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b013393t1a4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3634t1" mRNA complement(join(17978373..17978748,17979087..17979091, 17979440..17980781,17981620..17981700,17982258..17982461, 17982578..17982874,17983816..17983929,17984294..17984333, 17984463..17984998)) /locus_tag="TCM_013864" /product="IQ-domain 28, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014091" /inference="similar to AA sequence:ricco:30147.m014091" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3634t1" mRNA complement(join(17978373..17978748,17979087..17979091, 17979440..17980781,17981620..17981703,17982258..17982461, 17982578..17982874,17983816..17983929,17984294..17984333, 17984463..17984545)) /locus_tag="TCM_013864" /product="IQ-domain 28, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014091" /inference="similar to AA sequence:ricco:30147.m014091" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3634t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3634t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc593t5" CDS complement(join(17978597..17978748,17979440..17980781, 17981620..17981700,17982258..17982461,17982578..17982874, 17983816..17983899)) /locus_tag="TCM_013864" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014091" /codon_start=1 /product="IQ-domain 28, putative isoform 3" /protein_id="EOY21757.1" /db_xref="TAIR:AT1G74690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4B0" /translation="MGKSPGKWIKTVLFGKKSSKSSYPKGREKVANEKEVLVADRASE TDDAVAPPFTSQLNPYATERDEGKLELENKEAANISHNDGISLPVSEGRDSQKSTLQD SPYDPERMKREQAATMAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAIGTLCC MMGIVKLQARVRGVMVRHSDSGLEVQKKCNQINLLESKLVVSLGVNMPARIEKLSTNA FVRKLVAASPTVMPLRLRYNAGESNSVWNWLECWSASCFWKPVPQPKKASDAKLQRKP VNCQVVDTETGRPKRSVRRIPPANLDGAVQATSEFDKPKRNLRKISNHQAELAQENPQ NELEKVKRNLRKVHNPVVENSLQSEVEFEKPKQSLEKVSNTTNLNIVEQSLNSSAEKT NKEMDVTIDSSAEKMKKETVMTVNSSAEKMRKETATVNSSAEKMKKETALTVNSSAET MKKETALTVNSSAEKMKKEMALKLNISAEKMKKEMPLTVNGSSEKTKKEMALAVSISP DIKTMPGSFGVNETSDLLHADSLGVVSKPLIDGAVKDENTPITNGELNRKDDSTNNEN QKSGRKASYPAKQNRSENGAQNSPALPSYMAATESAKAKLRLQGSPSSGQDAGDKNNL TRRQSLPSSANKISSQSPRTQKLVHAGGRAGNKTDRSTLSSKDGNAVGAYWSSSALFE STHKVLVLDIFAHQQIFGPTIKLSGLCYITSFWHDII" CDS complement(join(17978623..17978748,17979087..17979091, 17979440..17980781,17981620..17981700,17982258..17982461, 17982578..17982874,17983816..17983899)) /locus_tag="TCM_013864" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014091" /codon_start=1 /product="IQ-domain 28, putative isoform 1" /protein_id="EOY21755.1" /db_xref="TAIR:AT1G74690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4B0" /translation="MGKSPGKWIKTVLFGKKSSKSSYPKGREKVANEKEVLVADRASE TDDAVAPPFTSQLNPYATERDEGKLELENKEAANISHNDGISLPVSEGRDSQKSTLQD SPYDPERMKREQAATMAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAIGTLCC MMGIVKLQARVRGVMVRHSDSGLEVQKKCNQINLLESKLVVSLGVNMPARIEKLSTNA FVRKLVAASPTVMPLRLRYNAGESNSVWNWLECWSASCFWKPVPQPKKASDAKLQRKP VNCQVVDTETGRPKRSVRRIPPANLDGAVQATSEFDKPKRNLRKISNHQAELAQENPQ NELEKVKRNLRKVHNPVVENSLQSEVEFEKPKQSLEKVSNTTNLNIVEQSLNSSAEKT NKEMDVTIDSSAEKMKKETVMTVNSSAEKMRKETATVNSSAEKMKKETALTVNSSAET MKKETALTVNSSAEKMKKEMALKLNISAEKMKKEMPLTVNGSSEKTKKEMALAVSISP DIKTMPGSFGVNETSDLLHADSLGVVSKPLIDGAVKDENTPITNGELNRKDDSTNNEN QKSGRKASYPAKQNRSENGAQNSPALPSYMAATESAKAKLRLQGSPSSGQDAGDKNNL TRRQSLPSSANKISSQSPRTQKLVHAGGRAGNKTDRSTLSSKDGNAKLLVRIGVLPHC LSQRIRYSFLTFLHISKSSVLLLSCLVCVT" CDS complement(join(17978623..17978748,17979087..17979091, 17979440..17980781,17981620..17981703,17982258..17982461, 17982578..17982874,17983816..17983899)) /locus_tag="TCM_013864" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014091" /codon_start=1 /product="IQ-domain 28, putative isoform 2" /protein_id="EOY21756.1" /db_xref="TAIR:AT1G74690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4B0" /translation="MGKSPGKWIKTVLFGKKSSKSSYPKGREKVANEKEVLVADRASE TDDAVAPPFTSQLNPYATERDEGKLELENKEAANISHNDGISLPVSEGRDSQKSTLQD SPYDPERMKREQAATMAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAIGTLCC MMGIVKLQARVRGVMVRHSDSGLEVQKKCNQINLLQESKLVVSLGVNMPARIEKLSTN AFVRKLVAASPTVMPLRLRYNAGESNSVWNWLECWSASCFWKPVPQPKKASDAKLQRK PVNCQVVDTETGRPKRSVRRIPPANLDGAVQATSEFDKPKRNLRKISNHQAELAQENP QNELEKVKRNLRKVHNPVVENSLQSEVEFEKPKQSLEKVSNTTNLNIVEQSLNSSAEK TNKEMDVTIDSSAEKMKKETVMTVNSSAEKMRKETATVNSSAEKMKKETALTVNSSAE TMKKETALTVNSSAEKMKKEMALKLNISAEKMKKEMPLTVNGSSEKTKKEMALAVSIS PDIKTMPGSFGVNETSDLLHADSLGVVSKPLIDGAVKDENTPITNGELNRKDDSTNNE NQKSGRKASYPAKQNRSENGAQNSPALPSYMAATESAKAKLRLQGSPSSGQDAGDKNN LTRRQSLPSSANKISSQSPRTQKLVHAGGRAGNKTDRSTLSSKDGNAKLLVRIGVLPH CLSQRIRYSFLTFLHISKSSVLLLSCLVCVT" mobile_element complement(17987591..17987737) /note="source:CACAO_M_E3884_F22_scaffold_1 12981 13127" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17988688..17988921 /note="source:CACAO_M_E5800_F12_scaffold_2 20830 21032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17989491..17989537) /note="source:scaffold_3_CACTA_0384 13765 13813" /mobile_element_type="transposon:TIR/CACTA" gene complement(17990275..17994531) /locus_tag="TCM_013866" /note="dbxref CacaoGD:Thecc1EG013866" mRNA complement(join(17990275..17990359,17992610..17992694, 17992841..17992890,17993216..17993857,17994520..17994531)) /locus_tag="TCM_013866" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element complement(17991245..17991324) /note="source:INTACT280_F60_scaffold_5-int 8467 8555" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(17992636..17992694,17992841..17992890, 17993216..17993331)) /locus_tag="TCM_013866" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21758.1" /translation="MRYRDLKYKSEYIGNRMLEEHFVMKVSIALVKVSRLEESSSLDS PLEGGVVQRVLELFMLNTEKGDLHMYNLRK" mobile_element complement(17994656..17997348) /note="source:CACAO_M_S_E14383_F144_scaffold_2 1 2722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17999625..18001359 /note="source:CACAO_M_E23583_F60_scaffold_4 2 1706" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18006133..18009318 /locus_tag="TCM_013867" /note="dbxref CacaoGD:Thecc1EG013867" mRNA join(18006133..18006614,18006715..18006820, 18007347..18007701,18008088..18008559,18008639..18008694, 18008864..18008908,18009002..18009028) /locus_tag="TCM_013867" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008044001" /inference="similar to AA sequence:ricco:30147.m014090" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8453t2" CDS join(18006569..18006614,18006715..18006820, 18007347..18007701,18008088..18008559,18008639..18008694, 18008864..18008908) /locus_tag="TCM_013867" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014090" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21759.1" /db_xref="TAIR:AT5G62550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9P8R6" /translation="MEEPVKEQPPSAPFAGSAGKSKLRYPLRSSMKSKEEKPLAGDLS NSSSSRRGRATPSVSKSVGVLDLSKEKSAKPPRRLSIPTKSTVTPSPKFVGTVTPISE ARAKKSTNVQGKSDTPLSDASRSATRRRFSVLSSASYWLSQIKLSESASKHSVSLGFF KLALEAGCEPLQRMRDELRSYLGRHNLGENDEAIMELLKSYNVSENSDQPQVSETCSQ LPEEGTRSSDDEVHSVSSVVVSRKLKPKSLNTDAAQASSVAESAKKAIPKNNPVTRNR ALNKNSSNSRSVSDTGSRTVQKKTQKTTRQEPVKGRDRAKRPGIKSANEEDQVSPTAA AETVEEDKENMDAPLTEEISATEEM" mRNA join(18006586..18006614,18006715..18006820, 18007347..18007701,18008088..18008563,18008639..18008694, 18008864..18009318) /locus_tag="TCM_013867" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008044001" /inference="similar to AA sequence:ricco:30147.m014090" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc538t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8453t2" CDS join(18006759..18006820,18007347..18007701, 18008088..18008563,18008639..18008648) /locus_tag="TCM_013867" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014090" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21760.1" /db_xref="TAIR:AT5G62550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9P8R6" /translation="MKSKEEKPLAGDLSNSSSSRRGRATPSVSKSVGVLDLSKEKSAK PPRRLSIPTKSTVTPSPKFVGTVTPISEARAKKSTNVQGKSDTPLSDASRSATRRRFS VLSSASYWLSQIKLSESASKHSVSLGFFKLALEAGCEPLQRMRDELRSYLGRHNLGEN DEAIMELLKSYNVSENSDQPQVSETCSQLPEEGTRSSDDEVHSVSSVVVSRKLKPKSL NTDAAQASSVAESAKKAIPKNNPVTRNRALNKNSSNSRSVSDTGSRTVQKKTQKTTRQ EPVKGRDRAKRPGIKSANEEGKSS" gene 18009195..18009841 /locus_tag="TCM_013868" /note="dbxref CacaoGD:Thecc1EG013868" mRNA 18009195..18009841 /locus_tag="TCM_013868" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene01600" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS 18009473..18009835 /locus_tag="TCM_013868" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21761.1" /translation="MNERERITGGIHSRRRKRTKCGRNFNRSERHRRRWNQREGDGED QSIGRAIKSLQGGKDDGAEGRGDARLGRCLSALGYRLCIGIRLLTRWLLSPPPSCLTP SPFVSSFFFFFLSFPSRL" gene complement(18010061..18016781) /locus_tag="TCM_013869" /note="dbxref CacaoGD:Thecc1EG013869" mRNA complement(join(18010061..18011052,18012262..18012350, 18012448..18012537,18015668..18015693,18015830..18015963, 18016431..18016781)) /locus_tag="TCM_013869" /product="Ubiquiting-conjugating enzyme 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g10640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011789t2" /inference="similar to AA sequence:Phytozome:GSVIVT01020056001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8475t3" CDS complement(join(18010924..18011052,18012262..18012350, 18012448..18012537,18015668..18015693,18015830..18015954)) /locus_tag="TCM_013869" /note="paralog of Thecc1EG011789t2" /codon_start=1 /product="Ubiquiting-conjugating enzyme 2" /protein_id="EOY21762.1" /db_xref="Phytozome:GSVIVT01020056001" /db_xref="TAIR:AT2G02760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P63146" /translation="MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPD DTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDV AAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD" mobile_element complement(18020654..18022101) /note="source:CACAO_M_E58324_F9_scaffold_9 8788 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18022109..18025116 /note="source:CACAO_M_E22474_F15_scaffold_3 1 2979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18025117..18026264) /note="source:CACAO_M_E58324_F9_scaffold_9 7669 8790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18028753..18029399) /note="source:scaffold_9_CACTA_0931 1 646" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18030529..18031368 /note="source:CACAO_M_E58324_F9_scaffold_9 22 838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18033994..18036749 /note="source:CACAO_M_S_E31993_F79_scaffold_3 1 2756" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18037085..18057312) /locus_tag="TCM_013872" /note="dbxref CacaoGD:Thecc1EG013872" mRNA complement(join(18037085..18037331,18042859..18043082, 18045461..18045590,18045731..18045783,18046653..18046740, 18054731..18055364,18056235..18056308,18057222..18057312)) /locus_tag="TCM_013872" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.17 coverage" mobile_element 18039070..18042206 /note="source:CACAO_M_E4863_F82_scaffold_2 1 3140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18042189..18042326 /note="source:CACAO_M_S_E100312_F82_scaffold_9 9531 9675" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(18042883..18043082,18045461..18045590, 18045731..18045783,18046653..18046740,18054731..18054919)) /locus_tag="TCM_013872" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21763.1" /translation="MTYDFFEMRDLITVAHRGDAKVDAKPCEVSIDIRGEECLSRPRG GCHGPDGEFRVVTVCVNEDCGSLKFNVDGVANGCLGESGIRDALRDYNGNVSNKVEVA MKKILLVKSHCHDPELPIGPVTTAARPRQTFFTPNVDRNLARLSYQLSHFPVTGVPWA NLIRRARFPIIELISIGEARKITPEVGFEYTSRWPPCETGTQPTPRNGCVVRGEMCLC V" mobile_element complement(18043668..18044964) /note="source:CACAO_M_S_E100312_F82_scaffold_9 3917 5210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18044943..18045078) /note="source:CACAO_M_S_E144426_F33_scaffold_10 9965 10098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18044963..18045234 /note="source:scaffold_3_CACTA_0382 6648 6918" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18045335..18045400 /note="source:scaffold_3_CACTA_0382 9535 9600" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18045336..18045416 /note="source:CACAO_M_E14312_F12_scaffold_3 17386 17468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18045402..18045586 /note="source:CACAO_M_E12740_F85_scaffold_3 3047 3228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18054749..18056661) /note="source:CACAO_M_E59703_F82_scaffold_9 1431 3328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18057128..18057371) /note="source:CACAO_M_S_E64023_F13_scaffold_5 17473 17703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18057685..18058487 /note="source:CACAO_M_E36044_F82_scaffold_5 2500 3302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18059026..18066118 /note="source:CACAO_M_E22484_F328_scaffold_3 1 7093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18066219..18081402 /note="source:CACAO_M_E22484_F328_scaffold_3 7094 22277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18082220..18082322 /note="source:CACAO_Mutator_E1149_scaffold_5 19 120" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18082345..18082863 /note="source:CACAO_M_E22545_F73_scaffold_3 1 519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18082964..18085146) /note="source:CACAO_M_S_E17011_F73_scaffold_3 1 2183" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18085822..18087894 /note="source:CACAO_M_E22490_F106_scaffold_3 1 2073" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18090543..18091417 /note="source:scaffold_1_CACTA_0009 7986 8880" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18092679..18092761 /note="source:CACAO_on_S_E176_scaffold_5 4976 5061" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18092837..18092899 /note="source:CACAO_Mutator_E1998_scaffold_9 6589 6651" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18092897..18095528 /note="source:CACAO_Mutator_E1998_scaffold_9 7251 10105" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18095492..18096012 /note="source:scaffold_1_CACTA_0009 13310 13844" /mobile_element_type="transposon:TIR/CACTA" gene complement(18095810..18102131) /locus_tag="TCM_013879" /note="dbxref CacaoGD:Thecc1EG013879" mRNA complement(join(18095810..18097070,18097165..18097341, 18097441..18097521,18097603..18097911,18098050..18098193, 18098408..18098497,18098688..18098764,18098866..18098983, 18099470..18099699,18099791..18099947,18100154..18100354, 18100433..18100528,18100666..18100851,18100951..18101120, 18101229..18101460,18101657..18102131)) /locus_tag="TCM_013879" /product="ATP-binding cassette A2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008042001" /inference="similar to AA sequence:TAIR:AT3G47730.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc923t6" CDS complement(join(18096810..18097070,18097165..18097341, 18097441..18097521,18097603..18097911,18098050..18098193, 18098408..18098497,18098688..18098764,18098866..18098983, 18099470..18099699,18099791..18099947,18100154..18100354, 18100433..18100528,18100666..18100851,18100951..18101120, 18101229..18101460,18101657..18102025)) /locus_tag="TCM_013879" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ATP-binding cassette A2 isoform 1" /protein_id="EOY21764.1" /db_xref="TAIR:AT3G47730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84K47" /translation="MNLQRGFALLYQQFKALLKKNLLLSWRNKRATFLQLFSSLFFVF LIFCIQKSTDARNANSTAYEVLRDPKPLVAPAIPPCEDKFFVKLPCFDFVWSGNESQT FDRIVRAIRENNPGRPIPESKVKWFRTRGEVDDWLFNNRMHVPGALHFTQVNASVISY GLQTNSTPLAKRGQFEDPTLKFQVPLQVAAEREIARSLIGDPNFRWIVELKEFPHPAM ETLAALALVGPTFFLAIAMFSFVFQIGSLVSEKELKLRQAMTMMGLLDSAYWLSWLTW EGIMTLLSSLFIILFGMIFQFDFFLNNNFAVIFLVFFLFQLNMVGFAFLLSPFISKSS SATTIGFSIFIVGFFTQIITSNGFPYDKSFSQGLQNVWSLFPPNLLAQALKLLSDATS TPEDIGVSWSRRTKCAPNDEQCVITINDIYIWLVATFLVWVVLAIYFDNIIPNASGVR KSIFYFLRPGYWTGKGGKEREGGICSCIGSAPPVEHITPDDGDVLEEENLVKTQTGEG AVDLNVAVQIRGLAKTYPGSRKIGWCCKCKKTSPYHAVKGLWVNFAKNQLFCLLGPNG AGKTTAINCLTGITPVTSGDALIYGYSIRSSVGMSNIRRIIGVCPQFDILWNALSGKE HLELFASIRGLPPATIKSVVQKSLAEVRLTEAAKVRAGSYSGGMRRRLSVAAALLGDP KLVILDEPTTGMDPITRRHVWDIIESAKKGRAIILTTHSMEEADVLSDRIGIMAKGRL RCIGTSIRLKSRFGTGFIANVSFTGSNNGLSPPNGDAVAPTYHQESVKQFFKDHLDVV PKEENRAFLTFVIPHDREKLLTKFFMELQEREQEFGIADIQLGLTTLEEVFLNIARQA ELESAAAEGRLVTLTITSGASVQIPVGARFVGIPGTESAENPRGIMVEVYWEQDDSGA LCISGHSAEIPLPPNSQPLASLAATNRNSLGRRGPIHGIVISPDETFTPSS" mRNA complement(join(<18096829..18097070,18097165..18097341, 18097441..18097521,18097603..18097911,18098050..18098075, 18098866..18098983,18099470..18099699,18099791..18099947, 18100154..18100354,18100433..18100528,18100666..18100851, 18100951..18101120,18101229..18101460,18101657..18102108)) /locus_tag="TCM_013879" /product="ABC transporter A family member 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008042001" /inference="similar to AA sequence:TAIR:AT3G47730.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc920t5; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc923t6" CDS complement(join(<18096831..18097070,18097165..18097341, 18097441..18097521,18097603..18097911,18098050..18098075, 18098866..18098983,18099470..18099699,18099791..18099947, 18100154..18100354,18100433..18100528,18100666..18100851, 18100951..18101120,18101229..18101460,18101657..18102025)) /locus_tag="TCM_013879" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ABC transporter A family member 2 isoform 2" /protein_id="EOY21765.1" /db_xref="TAIR:AT3G47730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84K47" /translation="MNLQRGFALLYQQFKALLKKNLLLSWRNKRATFLQLFSSLFFVF LIFCIQKSTDARNANSTAYEVLRDPKPLVAPAIPPCEDKFFVKLPCFDFVWSGNESQT FDRIVRAIRENNPGRPIPESKVKWFRTRGEVDDWLFNNRMHVPGALHFTQVNASVISY GLQTNSTPLAKRGQFEDPTLKFQVPLQVAAEREIARSLIGDPNFRWIVELKEFPHPAM ETLAALALVGPTFFLAIAMFSFVFQIGSLVSEKELKLRQAMTMMGLLDSAYWLSWLTW EGIMTLLSSLFIILFGMIFQFDFFLNNNFAVIFLVFFLFQLNMVGFAFLLSPFISKSS SATTIGFSIFIVGFFTQIITSNGFPYDKSFSQGLQNVWSLFPPNLLAQALKLLSDATS TPEDIGVSWSRRTKCAPNDEQCVITINDIYIWLVATFLVWVVLAIYFDNIIPNASGVR KSIFYFLRPGYWTGKGGKEREGGICSCIGSAPPVEHITPDDGDVLEEENLVKTQTGEG AVDLNVAVQIRGLAKTYPGSRKIGWCCKCKKTSPYHAVKGLWVNFAKNQLFCLLGPNG AGKTTAINCLTGITPVTSGDAKLVILDEPTTGMDPITRRHVWDIIESAKKGRAIILTT HSMEEADVLSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANVSFTGSNNGLSPPNGDA VAPTYHQESVKQFFKDHLDVVPKEENRAFLTFVIPHDREKLLTKFFMELQEREQEFGI ADIQLGLTTLEEVFLNIARQAELESAAAEGRLVTLTITSGASVQIPVGARFVGIPGTE SAENPRGIMVEVYWEQDDSGALCISGHSAEIPLPPNSQPLASLAATNRNSLGRRGPIH GIVISPDE" gene 18102226..18108220 /locus_tag="TCM_013880" /note="dbxref CacaoGD:Thecc1EG013880" mRNA join(18102226..18102312,18103766..18105748, 18105846..18105920,18106012..18106069,18106337..18106452, 18106722..18106864,18107043..18107515,18107826..18108220) /locus_tag="TCM_013880" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g032890.1" /inference="similar to AA sequence:Phytozome:Sb03g032890.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2339t2" CDS join(18103970..18105748,18105846..18105920, 18106012..18106069,18106337..18106452,18106722..18106817) /locus_tag="TCM_013880" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY21766.1" /db_xref="Phytozome:Sb03g032890.1" /db_xref="TAIR:AT1G08070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S1M4" /translation="MNPNLLALLHSSDQLNQFKQIHSQIIVNCAALTRILVKKLIDSS FLGYAREVFDRIPLPDQALYISFISSYTKLSFNKEAIKLFASMHSSRTQMSSRAVLAV IKSCSGFSGVSVGKQVHGLVVNYGFDLDVFVQSALMDFYAKKGDFFSARKIFDGILVK DPVFYNCLISGYSKVGDVMAAECLFDEMKEKTVASWNSMISCYVNNGYHDKALEIFER MQANNIPPSQITWVTLLSLTAKLRDLKLGLKVKKLIADSNICVNTIVLTAIVNMFVKC GAIDEAREEFDWMRTRDTLAWSAMISGYAQNRRPTEALELFECMKKEQIRPNDVALVS VLSACSQLGSVEAGECLAACIETQDLASNVYVASALLDMYSKFGNIAKARQVFDKMPE RDIVSWNSMIVGLAVNGFAEDAILLYEKMKESEVKPDSITFVGLLTACSRTGLVELGL EFFRSMELHYSIEPKIEHYACIVDLFCRTGRLNEAYELVCRMEMEPNVVIWGTLLSAS RTHLNVELAELCVEKLLKLEPENSGHYVLLSNIYASLGRWQAALEVRNLMKNKRVQKV AAYSWIELDNTVHKFLVGDTFHPRSSEMMPASETVVVVAGCTSSNFRTISDLIMPAQT KVCEGLLDLATRRGVQVFSQIIFVQASVQVVVGVFELVASRMKGRSFTTKLEGSGTMK RQEERMSAEKYLASSIERFLGVLLF" gene 18107149..18120041 /locus_tag="TCM_013881" /note="dbxref CacaoGD:Thecc1EG013881" mRNA join(18107149..18107515,18107826..18108462, 18108557..18108774,18109353..18109737,18109850..18109929, 18110091..18110235,18111165..18111284,18111389..18111513, 18112716..18112874,18113837..18113999,18114078..18114203, 18114311..18114394,18115170..18115531,18116162..18116362, 18116677..18116786,18116878..18116962,18117286..18117414, 18117522..18117627,18117835..18117923,18118756..18120041) /locus_tag="TCM_013881" /product="ABC2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014095" /inference="similar to AA sequence:Phytozome:GSVIVT01008040001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3620t3" mRNA join(18108328..18108774,18109353..18109737, 18109850..18109929,18110091..18110235,18111165..18111284, 18111389..18111513,18112716..18112874,18113837..18113999, 18114078..18114203,18114311..18114394,18115170..18115531, 18116162..18116362,18116677..18116786,18116878..18116962, 18117286..18117414,18117522..18117597,18117614..18117627, 18117835..18117923,18118756..18119314) /locus_tag="TCM_013881" /product="ABC2 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014095" /inference="similar to AA sequence:Phytozome:GSVIVT01008040001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc666t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3620t3" mRNA join(18108328..18108774,18109353..18109737, 18109850..18109929,18110091..18110235,18111165..18111284, 18111389..18111513,18112716..18112874,18113837..18113999, 18114078..18114203,18114311..18114394,18115170..18115531, 18116162..18116362,18116677..18116786,18116878..18116962, 18117286..18117414,18117522..18117627,18117835..18117923, 18118756..18118793,18118928..18119298) /locus_tag="TCM_013881" /product="ABC2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014095" /inference="similar to AA sequence:Phytozome:GSVIVT01008040001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc646t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3620t3" CDS join(18108405..18108462,18108557..18108774, 18109353..18109737,18109850..18109929,18110091..18110235, 18111165..18111284,18111389..18111513,18112716..18112874, 18113837..18113999,18114078..18114203,18114311..18114394, 18115170..18115531,18116162..18116362,18116677..18116786, 18116878..18116962,18117286..18117414,18117522..18117627, 18117835..18117923,18118756..18119055) /locus_tag="TCM_013881" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ABC2 isoform 1" /protein_id="EOY21767.1" /db_xref="Phytozome:GSVIVT01008040001" /db_xref="TAIR:AT3G47780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STT5" /translation="MAGNCYNPVKWGQFSNLVPTKEIVLPFCNNFETSISIRRTPTKG KKRKIKLQYWRESLTYCIVSMADHHPTLGPSSFWAQANALLRKNLTFQKRNMWTNIRL ISFPLFFCILFVLLQKLVDSQLNNADNRCGCACVEVSGNGQCQRRECGLQYSTMDQAS SCPIPNPPGWPALLQIPGPNYRAVRTDLFMSADLPNESCRSTGSCPATTFFTGNNQSL GEILTGSMFSTSFNTNSSDLLGSLATNVLGTETYPEGYNYIDPAFASALPIYNVQSQC SSNSTSSVLINQPSITREIEIRCVQGLYLWRNSSSEVNAELYKGYRKGNLEEKINEFV AAYDFLNSDGNNFNVSVWYNSTYSNYSAGSPMSLLRIPRSVNLASNAYLQFLRGPGTK MLLEFVKEMPKPETELRIDLSSLLGTLFFTWVVLQLFPVVLTSLVYEKQQKLRVMMKM HGLGDGPYWMITYAYFLVISLLYMLCFVIFGSLIGLKFFTLNDYSIQFVFYFIYINLQ ISMAFLVAAMFSNVKTASVIGYIVVFGTGLLGGFLFQSFIEDESFPRGWIITMELYPG FSLYRGLYEFGQYSFRGNYMGTDGMRWGDLSDSTNGMREVLIITFIEWLVVLFVAYYV DQVSSSGAGKSPLFFLQNFRRKPPSSFRRPSLQRLGSKVFVQMDKPDVNQEREKVEQL LLEPSTSHPIICDNLKKIYPARDGNPEKFAVRGLSLALPRGECFGMLGPNGAGKTSLI NMMIGLTKPTSGTAYVQGLDIRTYMDTIYTSMGVCPQHDLLWETLTGREHLLFYGRLK NLRGSALNQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDE PSTGLDPASRNSLWSVVKRAKKDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPK ELKARYGGSYVFTMTTSANHEEEVENMVRHLSPSANKIYQISGTQKFELPKQEVRIAD VFQAVENAKSRFTVFAWGLADTTLEDVFIKVARGAQAVNILS" mRNA join(18108473..18108774,18109353..18109737, 18109850..18109929,18110091..18110235,18111165..18111284, 18111389..18111513,18112716..18112874,18113837..18113999, 18114078..18114203,18114311..18114394,18115170..18115531, 18116162..18116362,18116677..18116786,18116878..18116962, 18117286..18117414,18117518..18117627,18117835..18117923, 18118754..18119229) /locus_tag="TCM_013881" /product="ABC2 isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m014095" /inference="similar to AA sequence:Phytozome:GSVIVT01008040001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3620t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3620t3" CDS join(18108691..18108774,18109353..18109737, 18109850..18109929,18110091..18110235,18111165..18111284, 18111389..18111513,18112716..18112874,18113837..18113999, 18114078..18114203,18114311..18114394,18115170..18115531, 18116162..18116362,18116677..18116786,18116878..18116962, 18117286..18117414,18117522..18117627,18117835..18117923, 18118756..18118793,18118928..18118943) /locus_tag="TCM_013881" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ABC2 isoform 2" /protein_id="EOY21768.1" /db_xref="Phytozome:GSVIVT01008040001" /db_xref="TAIR:AT3G47780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STT5" /translation="MADHHPTLGPSSFWAQANALLRKNLTFQKRNMWTNIRLISFPLF FCILFVLLQKLVDSQLNNADNRCGCACVEVSGNGQCQRRECGLQYSTMDQASSCPIPN PPGWPALLQIPGPNYRAVRTDLFMSADLPNESCRSTGSCPATTFFTGNNQSLGEILTG SMFSTSFNTNSSDLLGSLATNVLGTETYPEGYNYIDPAFASALPIYNVQSQCSSNSTS SVLINQPSITREIEIRCVQGLYLWRNSSSEVNAELYKGYRKGNLEEKINEFVAAYDFL NSDGNNFNVSVWYNSTYSNYSAGSPMSLLRIPRSVNLASNAYLQFLRGPGTKMLLEFV KEMPKPETELRIDLSSLLGTLFFTWVVLQLFPVVLTSLVYEKQQKLRVMMKMHGLGDG PYWMITYAYFLVISLLYMLCFVIFGSLIGLKFFTLNDYSIQFVFYFIYINLQISMAFL VAAMFSNVKTASVIGYIVVFGTGLLGGFLFQSFIEDESFPRGWIITMELYPGFSLYRG LYEFGQYSFRGNYMGTDGMRWGDLSDSTNGMREVLIITFIEWLVVLFVAYYVDQVSSS GAGKSPLFFLQNFRRKPPSSFRRPSLQRLGSKVFVQMDKPDVNQEREKVEQLLLEPST SHPIICDNLKKIYPARDGNPEKFAVRGLSLALPRGECFGMLGPNGAGKTSLINMMIGL TKPTSGTAYVQGLDIRTYMDTIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLRGSA LNQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLD PASRNSLWSVVKRAKKDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKARY GGSYVFTIIPSS" CDS join(18108691..18108774,18109353..18109737, 18109850..18109929,18110091..18110235,18111165..18111284, 18111389..18111513,18112716..18112874,18113837..18113999, 18114078..18114203,18114311..18114394,18115170..18115531, 18116162..18116362,18116677..18116786,18116878..18116962, 18117286..18117414,18117522..18117597,18117614..18117627, 18117835..18117876) /locus_tag="TCM_013881" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="ABC2 isoform 3" /protein_id="EOY21769.1" /db_xref="Phytozome:GSVIVT01008040001" /db_xref="TAIR:AT3G47780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STT5" /translation="MADHHPTLGPSSFWAQANALLRKNLTFQKRNMWTNIRLISFPLF FCILFVLLQKLVDSQLNNADNRCGCACVEVSGNGQCQRRECGLQYSTMDQASSCPIPN PPGWPALLQIPGPNYRAVRTDLFMSADLPNESCRSTGSCPATTFFTGNNQSLGEILTG SMFSTSFNTNSSDLLGSLATNVLGTETYPEGYNYIDPAFASALPIYNVQSQCSSNSTS SVLINQPSITREIEIRCVQGLYLWRNSSSEVNAELYKGYRKGNLEEKINEFVAAYDFL NSDGNNFNVSVWYNSTYSNYSAGSPMSLLRIPRSVNLASNAYLQFLRGPGTKMLLEFV KEMPKPETELRIDLSSLLGTLFFTWVVLQLFPVVLTSLVYEKQQKLRVMMKMHGLGDG PYWMITYAYFLVISLLYMLCFVIFGSLIGLKFFTLNDYSIQFVFYFIYINLQISMAFL VAAMFSNVKTASVIGYIVVFGTGLLGGFLFQSFIEDESFPRGWIITMELYPGFSLYRG LYEFGQYSFRGNYMGTDGMRWGDLSDSTNGMREVLIITFIEWLVVLFVAYYVDQVSSS GAGKSPLFFLQNFRRKPPSSFRRPSLQRLGSKVFVQMDKPDVNQEREKVEQLLLEPST SHPIICDNLKKIYPARDGNPEKFAVRGLSLALPRGECFGMLGPNGAGKTSLINMMIGL TKPTSGTAYVQGLDIRTYMDTIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLRGSA LNQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLD PASRNSLWSVVKRELFSPRIQWKRQRCYVID" CDS join(18108691..18108774,18109353..18109737, 18109850..18109929,18110091..18110235,18111165..18111284, 18111389..18111513,18112716..18112874,18113837..18113999, 18114078..18114203,18114311..18114394,18115170..18115531, 18116162..18116362,18116677..18116786,18116878..18116962, 18117286..18117414,18117518..18117538) /locus_tag="TCM_013881" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="ABC2 isoform 4" /protein_id="EOY21770.1" /db_xref="Phytozome:GSVIVT01008040001" /db_xref="TAIR:AT3G47780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STT5" /translation="MADHHPTLGPSSFWAQANALLRKNLTFQKRNMWTNIRLISFPLF FCILFVLLQKLVDSQLNNADNRCGCACVEVSGNGQCQRRECGLQYSTMDQASSCPIPN PPGWPALLQIPGPNYRAVRTDLFMSADLPNESCRSTGSCPATTFFTGNNQSLGEILTG SMFSTSFNTNSSDLLGSLATNVLGTETYPEGYNYIDPAFASALPIYNVQSQCSSNSTS SVLINQPSITREIEIRCVQGLYLWRNSSSEVNAELYKGYRKGNLEEKINEFVAAYDFL NSDGNNFNVSVWYNSTYSNYSAGSPMSLLRIPRSVNLASNAYLQFLRGPGTKMLLEFV KEMPKPETELRIDLSSLLGTLFFTWVVLQLFPVVLTSLVYEKQQKLRVMMKMHGLGDG PYWMITYAYFLVISLLYMLCFVIFGSLIGLKFFTLNDYSIQFVFYFIYINLQISMAFL VAAMFSNVKTASVIGYIVVFGTGLLGGFLFQSFIEDESFPRGWIITMELYPGFSLYRG LYEFGQYSFRGNYMGTDGMRWGDLSDSTNGMREVLIITFIEWLVVLFVAYYVDQVSSS GAGKSPLFFLQNFRRKPPSSFRRPSLQRLGSKVFVQMDKPDVNQEREKVEQLLLEPST SHPIICDNLKKIYPARDGNPEKFAVRGLSLALPRGECFGMLGPNGAGKTSLINMMIGL TKPTSGTAYVQGLDIRTYMDTIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLRGSA LNQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPKQGCLYG" gene 18120006..18123948 /locus_tag="TCM_013882" /note="dbxref CacaoGD:Thecc1EG013882" mRNA join(18120006..18120587,18121011..18121140, 18122788..18122911,18122997..18123095,18123202..18123948) /locus_tag="TCM_013882" /product="Galactose mutarotase-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013886t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400031513" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2956t1" CDS join(18120364..18120587,18121011..18121140, 18122788..18122911,18122997..18123095,18123202..18123821) /locus_tag="TCM_013882" /note="paralog of Thecc1EG013886t1" /codon_start=1 /product="Galactose mutarotase-like superfamily protein" /protein_id="EOY21771.1" /db_xref="Phytozome:PGSC0003DMP400031513" /db_xref="TAIR:AT3G47800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4K6" /translation="MAFRTTSACFASKHSSYGSCGFILIAPVQSKIQFTGPLQAMVIF LSSLLMRYNLMLLRPMLVIRKRYGDLNRLAGLKHEKLISWDKPKSSFVKLNVDGSAKG QPGVTAPRGVISDEDGNDTTYFGAIVGRVANRIKGAEFTINGVSYKLVANEGKNTLHG GSKGFADVIWHVRNYKQDSHVTFTYYSFDGEQGFPGNLQVSVTYMIIGTNKLGVKMEA KPLNKATPVNLALHTYWNLGGHSSGDILSHTLQLFGSSITPVDDELIPTGKIDPVQGT PYDFLQPHEIGSMLDQLPHGYDVNYVLDKSSPQHLRKVAVVHESKSGRKMELWTNKPG VQVYTSNMLKSEKGKDGFVYSTYAGLCLETQGFPDSVNHPNFPSQIVNPGETCKHFMV FRFTTN" gene complement(18124899..18131536) /locus_tag="TCM_013883" /note="dbxref CacaoGD:Thecc1EG013883" mRNA complement(join(18124899..18125659,18125747..18125937, 18126613..18126717,18127410..18127588,18127751..18128023, 18128369..18128430,18128539..18128801,18128900..18128974, 18129059..18129339,18130080..18130266,18130356..18130904, 18131058..18131536)) /locus_tag="TCM_013883" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(18125473..18125659,18125747..18125937, 18126613..18126717,18127410..18127588,18127751..18128023, 18128369..18128430,18128539..18128801,18128900..18128974, 18129059..18129339,18130080..18130266,18130356..18130904, 18131058..18131300)) /locus_tag="TCM_013883" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21772.1" /translation="MESLTELYWDSFRPWFKSLKLFKEERTSINTATWVVVKNIPWYL WHEDFFRMLGNKWGNFIKVDGSTSSKKRFDRALLLVEEMMKLKGQLMIPVIDEPSVDP SSEEKNSSILVQPLSRFGSFQIKVAQGQTHGSVQFLHQRNDSGLKKYGPEVGHMGPNP TKTLKTFLHDDPVDSMDNPKEFEQEVRHVTHHAKEFMNGIKVHTWHMSSLKRCWNFGG ISKTRPSPKRSLSLIGVITKWGEPCLEDTKSAVGNLAHEVLQILKTEEEELTGDYGDS VGDLPLAKWISKGGQGRKSSKVKVGRACNDRIKKRRFIGRSLERWKFNNKGGIITLWQ EDFFSFDNSYVGRNYILMTSKINDKDWACGFSNIYAPNNDKLKEDVWIELLGIMREIA LPWCLGGDFNAVLWDHERVRGVSNKREMEVTFSRLDRFLMAADMLERFLTLRQLNKES CKEVFVATWEESGKKHGKGGELWQRLRATKPAIKRWQTSLGGNFQHKIKVLEAEIQRK LQKWQASSVKGSHRAEIAKLKADLWKRRNQIDKLKVNSIEITDPSDLTEYRPISLVGS MYKVVAKVLANRLRVVIENVISPNQFAFNKGRKITDYVLIANELVDYLQKNREGRVFY KVDFEKAFNSVDWFFLEFVMAKVLSALVYKATATRLCKEVEIDNSGLIISYLQYADDT MIFSKSDLESVLKVKRVLRCFQNGVNIYFCDDEWIEGIILKVAFPHIFTLATNKIGKA KFKWPDHNTSIIDIIHVLSFALALTSRKQIKSKVSWECPPNSWFKFNTDELLRVVQVI LALEGERSHSLVAASSWVNSSNIIIESDSKNVVSWVSNPSKAPWRLKQLILQNPLTLK QSCRWLAN" gene complement(18133111..18135715) /locus_tag="TCM_013884" /note="dbxref CacaoGD:Thecc1EG013884" mRNA complement(join(18133111..18133773,18135489..18135572, 18135659..18135715)) /locus_tag="TCM_013884" /product="Zinc finger protein, putative" /inference="alignment:exonerate-protein:2:frave:gene25971" /inference="similar to AA sequence:ricco:30147.m014097" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1070t5" CDS complement(join(18133156..18133773,18135489..18135566)) /locus_tag="TCM_013884" /note="dbxref ricco:30147.m014097" /codon_start=1 /product="Zinc finger protein, putative" /protein_id="EOY21773.1" /translation="MRTATLYMGISANKSHDKPMPKDNSEIEAEDGEHDHLMQLEDSS PFPVFSIEIFANIVSHEPTIMQQLLVPQGQLMQSRTSWSAISSKLSQMHVPFSLHATV TQKIIECARSAANEVHNKNRKNIPIVVTLCPVRLMEEEALLSEHEASAESFDVQVFRL RGASKGAIEALEKVKVEGFTGQCVICLEEILDGMKACGMPCSHVYHHDCIVSWLEKSN VCPLCRFRCLLDL" gene complement(18133757..18148432) /locus_tag="TCM_013885" /note="dbxref CacaoGD:Thecc1EG013885" mRNA complement(join(18133757..18133773,18135489..18135572, 18135659..18136115,18136345..18136482,18148064..18148432)) /locus_tag="TCM_013885" /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene25972" /inference="alignment:exonerate- protein:2:ricco:29736.m002018.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013887t2" /inference="similar to AA sequence:ricco:30147.m014100" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00897t00001; inference alignment:Newbler:10:TSA:cgbaL_g00897t00002; inference alignment:Newbler:10:TSA:cgbaP1_g04872t00001" mRNA complement(join(18133757..18133773,18135489..18135572, 18135659..18136115,18136345..18136482,18137525..18137900)) /locus_tag="TCM_013885" /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene25972" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013887t2" /inference="similar to AA sequence:ricco:30147.m014100" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00897t00002; inference alignment:Newbler:10:TSA:cgbaL_g00897t00002" mRNA complement(join(18135481..18136115,18136345..18136482, 18148064..18148329)) /locus_tag="TCM_013885" /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene25972" /inference="alignment:exonerate- protein:2:ricco:29736.m002018.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013887t2" /inference="similar to AA sequence:ricco:30147.m014100" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00051t00007; alternateUTRof:Thecc1EG013885t2; inference alignment:Newbler:10:TSA:cgbaL_g00897t00002; inference alignment:Newbler:10:TSA:cgbaP1_g04872t00001" mRNA complement(join(18135481..18136115,18136345..18136482, 18137525..18137746,18137776..18137844)) /locus_tag="TCM_013885" /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene25972" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013887t2" /inference="similar to AA sequence:ricco:30147.m014100" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00051t00005; alternateUTRof:Thecc1EG013885t1; inference alignment:Newbler:10:TSA:cgbaL_g00897t00002; inference alignment:Newbler:10:TSA:cgbaP1_g04872t00001" CDS complement(join(18135810..18136115,18136345..18136482, 18148064..18148195)) /locus_tag="TCM_013885" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014100; paralog of Thecc1EG013887t2" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 2" /protein_id="EOY21775.1" /db_xref="TAIR:AT3G47810.3" /db_xref="UniProtKB/TrEMBL:UniRef50_C1EBS5" /translation="MVLVLALGDLHIPHRAADLPPKFKSMLVPGKIQHIICTGNLCIK EVQDYLKSLCPDLHITRGEYDEETRCLETKTLTIGQFKLGLCHGHQVIPWGDLDSLAM LQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLR VVVYVYELIDGEVKVDKIDFKKTTATTHSAH" CDS complement(join(18135810..18136115,18136345..18136482, 18148064..18148195)) /locus_tag="TCM_013885" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014100; paralog of Thecc1EG013887t2" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 2" /protein_id="EOY21776.1" /db_xref="TAIR:AT3G47810.3" /db_xref="UniProtKB/TrEMBL:UniRef50_C1EBS5" /translation="MVLVLALGDLHIPHRAADLPPKFKSMLVPGKIQHIICTGNLCIK EVQDYLKSLCPDLHITRGEYDEETRCLETKTLTIGQFKLGLCHGHQVIPWGDLDSLAM LQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLR VVVYVYELIDGEVKVDKIDFKKTTATTHSAH" CDS complement(join(18135810..18136115,18136345..18136482, 18137525..18137656)) /locus_tag="TCM_013885" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014100; paralog of Thecc1EG013887t2" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1" /protein_id="EOY21774.1" /db_xref="TAIR:AT3G47810.3" /db_xref="UniProtKB/TrEMBL:UniRef50_C1EBS5" /translation="MVLVLALGDLHIPHRAADLLPKFKSMLVPGKIQHIICTGNLCIK EVQDYLKSLCPDLHITRGEYDEETRCLETKTLTIGQFKLGLCHGHQVIPWGDLDSLAM LQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLR VVVYVYELIDGEVKVDKIDFKKTTATTHSAH" CDS complement(join(18135810..18136115,18136345..18136482, 18137525..18137656)) /locus_tag="TCM_013885" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m014100; paralog of Thecc1EG013887t2" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1" /protein_id="EOY21777.1" /db_xref="TAIR:AT3G47810.3" /db_xref="UniProtKB/TrEMBL:UniRef50_C1EBS5" /translation="MVLVLALGDLHIPHRAADLLPKFKSMLVPGKIQHIICTGNLCIK EVQDYLKSLCPDLHITRGEYDEETRCLETKTLTIGQFKLGLCHGHQVIPWGDLDSLAM LQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLR VVVYVYELIDGEVKVDKIDFKKTTATTHSAH" gene 18138146..18143740 /locus_tag="TCM_013886" /note="dbxref CacaoGD:Thecc1EG013886" mRNA join(18138146..18138652,18140169..18140341, 18142104..18142211,18142325..18142374,18142499..18142622, 18142708..18142806,18142913..18143740) /locus_tag="TCM_013886" /product="Galactose mutarotase-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031513" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013882t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400031513" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS join(18138459..18138652,18140169..18140341, 18142104..18142211,18142325..18142374,18142499..18142622, 18142708..18142806,18142913..18143532) /locus_tag="TCM_013886" /note="paralog of Thecc1EG013882t1" /codon_start=1 /product="Galactose mutarotase-like superfamily protein" /protein_id="EOY21778.1" /db_xref="Phytozome:PGSC0003DMP400031513" /db_xref="TAIR:AT3G47800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4K6" /translation="MFQRWFYDRYKEAVKVTMPLSPWVARQLSKWFNDALYFVVKPIN RMEFEIKNGKMDGLVNLLRKTAKEAWDVLSYDTFSLKHEKLISWDKPKSSFVKLNVDG SAKGQPGVTAPGKVIRDEDGTQYEEIGVYELKKGDFFANFTNYGAVMLSLVLPDKTGK LDDIVLGYDSVEDYKNDTTYFGAIVGRVANRIKGAEFTINGVSYKLVANEGKNTLHGG SKGFADVIWHVRNYKQDSHVTFTYYSFDGEQGFPGNLQVSVTYMIIGTNKLGVKMEAK PLNKATPVNLALHTYWNLGGHSSGDILSHTLQLFGSSITPVDDELIPTGKIDPVQGTP YDFLQPHEIGSMLDQLPHGYDVNYVLDKSSPQHLRKVAVVHESKSGRKMELWTNKPGV QVYTSNMLKSEKGKDGFVYSTYAGLCLETQGFPDSVNHPNFPSQIVNPGETYKHFMVF RFTAN" gene complement(18144051..18148523) /locus_tag="TCM_013887" /note="dbxref CacaoGD:Thecc1EG013887" mRNA complement(join(18144051..18144335,18146050..18146133, 18146220..18146675,18146905..18147042,18148064..18148305)) /locus_tag="TCM_013887" /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29736.m002018.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013885t3" /inference="similar to AA sequence:ricco:30147.m014100" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8455t4" mRNA complement(join(18145871..18146675,18146905..18147042, 18148064..18148523)) /locus_tag="TCM_013887" /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29736.m002018.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013885t3" /inference="similar to AA sequence:ricco:30147.m014100" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3744t4; alternateUTRof:Thecc1EG013887t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8455t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc617t16_G2" CDS complement(join(18146370..18146675,18146905..18147042, 18148064..18148195)) /locus_tag="TCM_013887" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014100; paralog of Thecc1EG013885t3" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1" /protein_id="EOY21779.1" /db_xref="TAIR:AT3G47810.3" /db_xref="UniProtKB/TrEMBL:UniRef50_C1EBS5" /translation="MVLVLALGDLHIPHRAADLPPKFKSMLVPGKIQHIICTGNLCIK EVQDYLKSLCPDLHITRGEYDEETRCPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAM LQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLR VVVYVYELIDGEVKVDKIDFKKTTATTHSAH" CDS complement(join(18146370..18146675,18146905..18147042, 18148064..18148195)) /locus_tag="TCM_013887" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014100; paralog of Thecc1EG013885t3" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1" /protein_id="EOY21780.1" /db_xref="TAIR:AT3G47810.3" /db_xref="UniProtKB/TrEMBL:UniRef50_C1EBS5" /translation="MVLVLALGDLHIPHRAADLPPKFKSMLVPGKIQHIICTGNLCIK EVQDYLKSLCPDLHITRGEYDEETRCPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAM LQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLR VVVYVYELIDGEVKVDKIDFKKTTATTHSAH" gene complement(18148626..18155434) /locus_tag="TCM_013888" /note="dbxref CacaoGD:Thecc1EG013888" mRNA complement(join(18148626..18149921,18150971..18151094, 18151447..18151625,18151855..18151990,18152074..18152443, 18154206..18154218,18155070..18155434)) /locus_tag="TCM_013888" /product="Serine/threonine-protein kinase NAK, expressed, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014101" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011774t2" /inference="similar to AA sequence:Phytozome:GSVIVT01020041001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3551t3" CDS complement(join(18149263..18149921,18150971..18151094, 18151447..18151625,18151855..18151990,18152074..18152443, 18154206..18154218,18155070..18155133)) /locus_tag="TCM_013888" /note="paralog of Thecc1EG011774t2" /codon_start=1 /product="Serine/threonine-protein kinase NAK, expressed, putative" /protein_id="EOY21781.1" /db_xref="Phytozome:GSVIVT01020041001" /db_xref="TAIR:AT1G14370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10R62" /translation="MGNCFRTRSKVDNSLSSQATSGRHVKSLIAGNYFSLSGASKLPN RENFSASSSVIKADSGKSVPGSLSAAKTESDILSSPHLKAFTFTELKNATRNFRLDNL IGEGGFGYVYKGWMVEQTLVAARPGYGMVVAVKKLKPEGFQGHKEWLSEVNYLGQLHH PNLVKLIGYCLEEENRLLVYEYLSKGSLENHLFRNVCLSIKFEAVVISGGARPLSWAM RIRVAIDTARGLSFLHDSEQPVIYRDFKASNILLDSEFNAKLSDFGLAKAGPVGDNSH VSTQVLGTQGYAAPEYIATGRLTARCDVYSFGVVLLELLSGRRAVDTTKIGVEENLVD WAKPYLSDRRKLFRIMDIKLQGQYPQRAAYTVALLALQCISEAKVRPRMADVLSALEQ LPTLSSPRVVHAAPHSEAQAVASPIPKSPLRKSYPTSPANMPYRGSSLPVETKSSSHV KSPQERQSFETKSAHNVKSSQELQQFEMKSPSLVKSPQEELSSEMRSPRHVKSLPSGK KSPHYL" mobile_element complement(18150736..18150775) /note="source:INTACT135F_F90_scaffold_2-int 13966 14005" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18156213..18156347 /note="source:CACAO_M_E49559_F88_scaffold_7 1 157" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18156226..18156473) /note="source:CACAO_M_E14081_F316_scaffold_3 15246 15495" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18158120..18162144 /note="source:CACAO_on_E35_A_scaffold_3 1 4025" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 18164448..18167566 /note="source:CACAO_M_E22491_F42_scaffold_3 1 3119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18168276..18170224 /note="source:CACAO_M_E294_F134_scaffold_1 13925 15858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18170225..18172376) /note="source:CACAO_M_E13798_F15_scaffold_3 804 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18172376..18172893) /note="source:CACAO_M_E43465_F86_scaffold_5 2399 2913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18172894..18173246 /note="source:CACAO_M_E22496_F33_scaffold_3 1 353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18173347..18175872 /note="source:CACAO_M_E22496_F33_scaffold_3 354 2879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18175872..18178278 /note="source:CACAO_M_E34124_F86_scaffold_4 518 2921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18175873..18176051) /note="source:INTACT1441F_F99_scaffold_9-int 6138 6312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18178279..18179087) /note="source:CACAO_M_E13798_F15_scaffold_3 1 809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18179088..18188113 /note="source:INTACT74_F134_scaffold_5-int 1935 11008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18188114..18190820 /note="source:scaffold_2_CACTA_0273 1858 4611" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18190821..18193755 /note="source:CACAO_M_E22497_F33_scaffold_3 1 2935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18193756..18194862 /note="source:scaffold_2_CACTA_0273 4606 5711" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18194868..18196184) /note="source:CACAO_M_E69760_F9_scaffold_9 8332 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18196185..18197560 /note="source:CACAO_M_E59205_F86_scaffold_9 1 1376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18197551..18197908) /note="source:CACAO_M_E22398_F15_scaffold_3 2305 2664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18200102..18202645 /note="source:CACAO_M_E43465_F86_scaffold_5 1364 3895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18202630..18205298 /note="source:CACAO_M_E43465_F86_scaffold_5 5667 8331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18205292..18207120) /note="source:scaffold_4_CACTA_0503 4345 6180" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18207402..18208228) /note="source:scaffold_4_CACTA_0503 3236 4063" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18208227..18208697) /note="source:CACAO_M_E49548_F86_scaffold_7 1 471" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18210108..18210986 /note="source:scaffold_2_CACTA_0273 5705 6585" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18212591..18213687) /note="source:scaffold_2_CACTA_0279 628 1706" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18213683..18214608) /note="source:CACAO_M_E14081_F316_scaffold_3 8349 9286" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18219811..18220607 /note="source:CACAO_M_E69460_F12_scaffold_9 8865 9661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18224877..18225161) /note="source:scaffold_7_CACTA_0785 5460 5744" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18225156..18225232 /note="source:CACAO_M_E52617_F328_scaffold_7 3722 3801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18225230..18225585) /note="source:scaffold_4_CACTA_0503 5825 6180" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18228042..18228870) /note="source:scaffold_4_CACTA_0503 3484 4312" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18232106..18232312 /note="source:scaffold_5_CACTA_0606 7799 8005" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18232338..18233337 /note="source:scaffold_5_CACTA_0606 8799 9844" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18233052..18233407) /note="source:scaffold_1_CACTA_0006 1514 1905" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18233565..18234070) /note="source:scaffold_1_CACTA_0006 989 1466" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18233814..18235145 /note="source:scaffold_2_CACTA_0273 7790 9055" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18235661..18235845 /note="source:CACAO_Mariner_E176_scaffold_6 1528 1707" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 18235841..18236181 /note="source:CACAO_Mariner_E176_scaffold_6 1934 2272" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(18237538..18240508) /note="source:CACAO_M_E53495_F172_scaffold_8 1 2944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18237554..18241020 /note="source:INTACT217_F173_scaffold_6-int 1 4067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18241021..18241348 /note="source:CACAO_on_S_E390_scaffold_9 12285 12612" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18241449..18242242 /note="source:CACAO_on_S_E390_scaffold_9 11045 11838" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18242242..18247063) /note="source:INTACT670_F33_scaffold_3-int 2687 7532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18251804..18252410 /note="source:CACAO_M_E294_F134_scaffold_1 9479 10085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18252405..18252942) /note="source:CACAO_M_S_E51603_F76_scaffold_4 3656 4185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18252941..18253478 /note="source:INTACT215_F33_scaffold_4-int 8034 8571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18255948..18256129 /note="source:CACAO_M_E44088_F76_scaffold_5 1725 1906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18257317..18258179) /note="source:CACAO_M_S_E6027_F12_scaffold_2 3799 4664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18263635..18264338 /note="source:INTACT439_F42_scaffold_7-int 3020 3723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18265994..18268192 /note="source:CACAO_M_E11662_F12_scaffold_2 13834 16029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18268293..18269144 /note="source:CACAO_M_E58440_F42_scaffold_9 9282 10138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18270004..18271324) /note="source:CACAO_M_S_E119615_F3_scaffold_9 881 2657" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18273084..18280455) /locus_tag="TCM_013899" /note="dbxref CacaoGD:Thecc1EG013899" mRNA complement(join(18273084..18273802,18275648..18275676, 18275771..18275971,18278878..18279114,18280275..18280455)) /locus_tag="TCM_013899" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(18273714..18273802,18275648..18275676, 18275771..18275971,18278878..18279038)) /locus_tag="TCM_013899" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21782.1" /translation="MWLPMLNRVKTKLVGWKSKLLTCQTLLCKIIMMLFTCSIECLYI EEAQEIDKRRQFLWGELDGKKNESICKLIVCGLGITNLMLKNKALLNKWVWRYGSKIE NLWKQVMAEINGKNLFELMSRFLRWSWPDLPNPHTNSGHTTTLNMNSVSLHFALTRT" gene complement(18281423..18282569) /locus_tag="TCM_013900" /note="dbxref CacaoGD:Thecc1EG013900" mRNA complement(join(18281423..18281731,18282409..18282569)) /locus_tag="TCM_013900" /product="Activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008034001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011736t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008034001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6570t1" CDS complement(join(18281582..18281731,18282409..18282534)) /locus_tag="TCM_013900" /note="paralog of Thecc1EG011736t1" /codon_start=1 /product="Activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1" /protein_id="EOY21783.1" /db_xref="Phytozome:GSVIVT01008034001" /db_xref="TAIR:AT1G74500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CA64" /translation="MSSRRSRSRQSGSSRITDDQIDDLVTKLQQLLPEIRNRHSDKVS AAKVLQETCNYIRSLHREVDDLSERLSELLATTDSAQAAIIRSLLMQ" mobile_element 18282546..18282610 /note="source:CACAO_M_E22186_F143_scaffold_3 9929 9997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18282560..18282618) /note="source:CACAO_M_E22186_F143_scaffold_3 9952 10009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18283933..18289655 /note="source:CACAO_M_E22518_F76_scaffold_3 1 5723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18295954..18297379) /note="source:CACAO_M_E56710_F44_scaffold_8 7713 9125" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18300215..18301190 /note="source:CACAO_M_S_E6055_F310_scaffold_2 649 1636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18306713..18309985) /note="source:scaffold_5_CACTA_0612 8694 11920" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18309919..18309995 /note="source:CACAO_M_S_E6055_F310_scaffold_2 13032 13109" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18313725..18319196 /locus_tag="TCM_013904" /note="dbxref CacaoGD:Thecc1EG013904" mRNA join(18313725..18313970,18316612..18316700, 18318705..18319196) /locus_tag="TCM_013904" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS join(18313749..18313970,18316612..18316700, 18318705..18318855) /locus_tag="TCM_013904" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21784.1" /translation="MKVVEAWDDRYRDILFRHHLFAWKETILKDWLSKLEDMIITQDR IDRLIWIKGGLSIKRFVSTMDSSLNEGSRKLSLTLTWWPEREVHSNLTSGDTSSNISP RRSHKRGHGLIEKSLMRLIGDYEFRHTLSEANSFADELDIFGVERQEMFFA" mobile_element complement(18315634..18315661) /note="source:CACAO_M_S_E100312_F82_scaffold_9 6573 6604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18315662..18318615 /note="source:CACAO_M_E22525_F273_scaffold_3 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18321439..18324393 /note="source:CACAO_M_S_E122136_F76_scaffold_10 1326 4277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18324219..18324412) /note="source:CACAO_M_E53587_F207_scaffold_8 8547 8737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18338122..18338754) /note="source:scaffold_8_CACTA_0860 4821 5499" /mobile_element_type="transposon:TIR/CACTA" gene complement(18342951..18345361) /locus_tag="TCM_013906" /note="dbxref CacaoGD:Thecc1EG013906" mRNA complement(join(18342951..18343245,18345026..18345090, 18345226..18345361)) /locus_tag="TCM_013906" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc7274t2" CDS complement(join(18343189..18343245,18345026..18345090, 18345226..18345349)) /locus_tag="TCM_013906" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21785.1" /translation="MVCLPMVSSHGKPHTSSCTLGNQPIYFGCRQSPISSARALQAEL CILGWRAFGVFLKLILATKIIGLLGPSLRSEWFLLAW" mobile_element 18346163..18346711 /note="source:scaffold_4_CACTA_0503 3211 3764" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18350204..18350581 /note="source:INTACT540_F242_scaffold_5-int 4580 6048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18350582..18351696 /note="source:scaffold_4_CACTA_0503 3099 4215" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18351797..18352806 /note="source:CACAO_M_E11669_F244_scaffold_2 840 1849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18352907..18353264) /note="source:CACAO_M_S_E100312_F82_scaffold_9 4460 4813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18353365..18353905) /note="source:CACAO_M_S_E100312_F82_scaffold_9 3913 4453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18355609..18356399 /note="source:scaffold_5_CACTA_0607 5071 5864" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18358655..18359758) /note="source:MITE_hAT_26 4 1080" /mobile_element_type="transposon:TIR/MITE" mobile_element 18363699..18364449 /note="source:CACAO_Again_on_E20_scaffold_1 1 787" /mobile_element_type="transposon:TIR/hAT" mobile_element 18364290..18364478 /note="source:CACAO_MITE_S2_scaffold_1 534 727" /mobile_element_type="transposon:TIR/MITE" mobile_element 18364609..18365668 /note="source:MITE_hAT_25 1 1060" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(18366272..18366328) /note="source:CACAO_PIF_E119_scaffold_3 2581 2635" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(18371160..18374551) /locus_tag="TCM_013907" /note="dbxref CacaoGD:Thecc1EG013907" mRNA complement(join(18371160..18371901,18372684..18372991, 18374254..18374551)) /locus_tag="TCM_013907" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(join(18371733..18371901,18372684..18372991, 18374254..18374298)) /locus_tag="TCM_013907" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21786.1" /translation="MRKSRVLGLLSPFKVIQQIGCNFGPIDPIKRLLKPNLHLSSIPS YSKSLFRWHLDPNAPSQLPTRIKLPPPRRLPPLNPYYHRLHAPMIVPSSRTSPILLYS ANSTRITLRATSSWVSDALSATPSTGPSVGPSCPPMSTAIDNEQAYSRLLSFMESIDA RIIHRLDVLETQN" mobile_element 18373315..18373844 /note="source:scaffold_5_CACTA_0585 6150 6660" /mobile_element_type="transposon:TIR/CACTA" gene 18380472..18383107 /locus_tag="TCM_013908" /note="dbxref CacaoGD:Thecc1EG013908" mRNA join(18380472..18380532,18381360..18383107) /locus_tag="TCM_013908" /product="Galactose oxidase/kelch repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008033001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011741t3" /inference="similar to AA sequence:Phytozome:GSVIVT01008033001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05711t00001" CDS 18381466..18382785 /locus_tag="TCM_013908" /note="paralog of Thecc1EG011741t3" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein" /protein_id="EOY21787.1" /db_xref="Phytozome:GSVIVT01008033001" /db_xref="TAIR:AT1G74510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6L3I4" /translation="MLEGPSYLVSRDLPSSCEHESKWIYNTFCVIELSRSKHRMEDGE DQMARKVLKPLEGDEDEGIEQDMYLAQTDEPGTQRHAGDHSESSLLIHQLGRDISINC LLRCSRSDYGAIASLNKGFCSLIRSGELYRLRREMEIVEHWVYFSCNLLEWEAFDPIC HRWMHLPRMTSNECFMCSDKESLAVGTELLVFGKEITSHVIYRYSILTNTWSSGMKMN TPRCLFGSASLGEIAILAGGSDPCGNILSSAELYNSETGKWVTIPSMNKARKMCSGVF MDGNFYVIGGIGVGNSKTLTCGEVYDLKTKTWREIPNMFPARNGGAGATEAPSAAEAP PLVAVVNNELYAADYALKEVRKYDKEKNLWVTLGQLPERAASMNGWGVAFRACGDRLI VIGGPRALGEGMIELNSWVPNEGSPQWNLLASKPSGSFVYNCAVMGC" mobile_element complement(18387026..18392639) /note="source:CACAO_Mutator_E161_scaffold_1 1401 9819" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18393325..18393470) /note="source:scaffold_1_CACTA_0009 9476 9622" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18393470..18396084) /note="source:scaffold_1_CACTA_0009 1657 6541" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18396085..18396952 /note="source:CACAO_M_E33977_F20_scaffold_4 15617 16541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18396953..18396976) /note="source:scaffold_1_CACTA_0009 1609 1656" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18398063..18399601 /note="source:CACAO_M_S_E66039_F17_scaffold_5 1 1526" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18399695..18399859 /note="source:CACAO_on_S_E46_scaffold_2 467 623" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18404851..18404958) /note="source:CACAO_M_E57346_F74_scaffold_9 5054 5161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18404877..18406134 /note="source:INTACT639F_F363_scaffold_5-int 4811 6049" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18405848..18406208) /note="source:INTACT19_F111_scaffold_6-int 1076 1400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18406870..18408493 /note="source:INTACT257_F186_scaffold_6-int 1782 3426" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18407966..18416650) /note="source:INTACT19_F111_scaffold_6-int 5298 13934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18416646..18420307) /note="source:INTACT19_F111_scaffold_6-int 1324 4920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18420080..18420400 /note="source:INTACT622F_F362_scaffold_4-int 11026 11355" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18425405..18426641) /note="source:INTACT132_F12_scaffold_9-int 8898 10133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18429598..18430014) /note="source:INTACT88_F12_scaffold_4-int 12720 13124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18430222..18430333) /note="source:CACAO_M_E14347_F12_scaffold_3 8782 8898" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18431948..18440864 /note="source:CACAO_M_S_E32051_F7_scaffold_3 1 8917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18440868..18441016) /note="source:CACAO_M_E65323_F12_scaffold_9 8868 9017" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18441149..18441219 /note="source:INTACT280_F60_scaffold_5-int 10399 10472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18442845..18443440) /note="source:scaffold_1_CACTA_0011 5254 5849" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18446203..18448760 /note="source:INTACT126_F14_scaffold_3-int 1 2624" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18448760..18449859 /note="source:CACAO_M_E1841_F5_scaffold_1 22974 24848" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18449860..18450946 /note="source:scaffold_1_CACTA_0011 7255 8364" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18450947..18451503 /note="source:CACAO_M_E1841_F5_scaffold_1 24849 25801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18451504..18451608 /note="source:CACAO_M_E52564_F14_scaffold_7 2582 2686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18451622..18452914 /note="source:CACAO_M_E52564_F14_scaffold_7 3340 4637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18452912..18453158) /note="source:CACAO_M_S_E4368_F12_scaffold_1 8883 9442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18453159..18455215) /note="source:INTACT111_F36_scaffold_10-int 8700 10693" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18455216..18456000) /note="source:CACAO_M_S_E4368_F12_scaffold_1 7091 8882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18456001..18458128 /note="source:CACAO_M_S_E100173_F15_scaffold_9 1 2128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18458229..18459057 /note="source:INTACT95_F143_scaffold_9-int 9481 10308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18458766..18459044) /note="source:scaffold_9_CACTA_0931 7768 10411" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18459045..18461461 /note="source:CACAO_M_E44582_F12_scaffold_6 3027 5445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18461462..18462102) /note="source:INTACT405F_F91_scaffold_4-int 6897 7603" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18461674..18462486 /note="source:INTACT266_F12_scaffold_7-int 2469 3285" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18462488..18462763 /note="source:INTACT201_F33_scaffold_5-int 1 275" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18469242..18469633 /note="source:INTACT95_F143_scaffold_9-int 10577 10962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18469634..18469675) /note="source:CACAO_M_S_E33930_F7_scaffold_4 2951 2992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18470551..18471434 /note="source:INTACT95_F143_scaffold_9-int 11996 12732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18472404..18472468 /note="source:INTACT95_F143_scaffold_9-int 2883 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18472414..18472515) /note="source:CACAO_M_E9677_F7_scaffold_2 6427 6519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18472463..18474633 /note="source:CACAO_M_E22653_F328_scaffold_3 1014 3181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18474634..18479325) /note="source:CACAO_M_E86184_F12_scaffold_13 1 4710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18479326..18483448 /note="source:INTACT126_F14_scaffold_3-int 10622 14743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18483868..18485262 /note="source:INTACT289_F14_scaffold_4-int 8753 10145" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18485819..18491243 /locus_tag="TCM_013921" /note="dbxref CacaoGD:Thecc1EG013921" mRNA join(18485819..18486668,18486810..18486887, 18488684..18488787,18488874..18491243) /locus_tag="TCM_013921" /product="RINT-1 / TIP-1 family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g25590.1" /inference="similar to AA sequence:ricco:30147.m014105" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1051t4" mRNA join(18485819..18486668,18486810..18486887, 18488874..18491243) /locus_tag="TCM_013921" /product="RINT-1 / TIP-1 family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g25590.1" /inference="similar to AA sequence:frave:gene25978" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b013455t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1051t4" CDS join(18486374..18486668,18486810..18486887, 18488684..18488787,18488874..18490784) /locus_tag="TCM_013921" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014105" /codon_start=1 /product="RINT-1 / TIP-1 family isoform 1" /protein_id="EOY21788.1" /db_xref="TAIR:AT3G47700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HPU9" /translation="MDSLQSLPPLSTLSTSASAILNSKLGTDHDLTRAPCLVSDLLTQ CDDLDRTVIHLNRTLESSLAFYASFSDRIGDLFGDVNSKLTDLGSSVCSRSSVSDEEG LGEELPALAKEVARVETVRAYAEIASKLDNLVGDIEDAVSSTMNKNLRNDPSTRNSEE TRLVAIKTLKLTEDLLTSVTKTRPQWVRLVSAVDHRVDRALAILRPLAIADHRALLTS LRWPPPLSNLTSSSLDTRKSNEVPNPLFTMQGDLKHQYCENFLALCRLQELQRQRKSR QLEGHNREVALHQPLWAIEELVNPVSVASQRHFSKWIDKPEFIFALVYKITRDYVDSM DELLQPLVDEAMLTGYSCREEWISAMVDSLSTYLAKEIFPIYVGQLEEESMTGIQSQA RTSWLHLVDLMVSFDKRIKSLVEQSGIFLSLQEDGTLRKISSLSVFCDRPDWLDLWAE IELAETLEKLKSEMDKEKNWTKKVQGAVLSNSDDYKSPAVGSSIFRCLSSLVDRCRSL PTVSLRSRFLRLAGTPLVKMFLDCLLLRCQEAEGLTALTDDDALMKVTNSINAAHFAE SILKEWREDVFFLEMGLDQGDQLGASVTENSGSEIPIEEYGNGIFHEEIVKFEDFRTE WVEKISVVVLRGFDARCRDYIKNRRQWQERSEGWTVSKALVGALDYLQGKMSVIEENL NRLDFAGIWRSLAAGVDRLIFNGILISNVKFHDNGVERFGYDLEVLVGVFRAWCLRPE GFFPKASEGLKLLKMEKKQLQDGLAVGEKWMKENGIRHLGVAEVEKIRKNRVFTK" CDS join(18486810..18486887,18488874..18490784) /locus_tag="TCM_013921" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene25978" /codon_start=1 /product="RINT-1 / TIP-1 family isoform 2" /protein_id="EOY21789.1" /db_xref="TAIR:AT3G47700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HPU9" /translation="MRKDWERSCRHWRRRWRGWKRLEHMRETRLVAIKTLKLTEDLLT SVTKTRPQWVRLVSAVDHRVDRALAILRPLAIADHRALLTSLRWPPPLSNLTSSSLDT RKSNEVPNPLFTMQGDLKHQYCENFLALCRLQELQRQRKSRQLEGHNREVALHQPLWA IEELVNPVSVASQRHFSKWIDKPEFIFALVYKITRDYVDSMDELLQPLVDEAMLTGYS CREEWISAMVDSLSTYLAKEIFPIYVGQLEEESMTGIQSQARTSWLHLVDLMVSFDKR IKSLVEQSGIFLSLQEDGTLRKISSLSVFCDRPDWLDLWAEIELAETLEKLKSEMDKE KNWTKKVQGAVLSNSDDYKSPAVGSSIFRCLSSLVDRCRSLPTVSLRSRFLRLAGTPL VKMFLDCLLLRCQEAEGLTALTDDDALMKVTNSINAAHFAESILKEWREDVFFLEMGL DQGDQLGASVTENSGSEIPIEEYGNGIFHEEIVKFEDFRTEWVEKISVVVLRGFDARC RDYIKNRRQWQERSEGWTVSKALVGALDYLQGKMSVIEENLNRLDFAGIWRSLAAGVD RLIFNGILISNVKFHDNGVERFGYDLEVLVGVFRAWCLRPEGFFPKASEGLKLLKMEK KQLQDGLAVGEKWMKENGIRHLGVAEVEKIRKNRVFTK" mobile_element complement(18493813..18496964) /note="source:scaffold_5_CACTA_0613 7748 10867" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18498290..18498368) /note="source:INTACT19F_F94_scaffold_1-int 2961 3031" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18498354..18498644 /note="source:CACAO_M_E56826_F244_scaffold_8 4223 4513" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18499752..18501139 /locus_tag="TCM_013922" /note="dbxref CacaoGD:Thecc1EG013922" mRNA join(18499752..18500553,18500673..18501139) /locus_tag="TCM_013922" /product="Gag protease polyprotein" /inference="alignment:exonerate- protein:2:frave:gene00262.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019584t1" /inference="similar to AA sequence:Phytozome:POPTR_1126s00200.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc4Loc4339t1_G2" CDS join(18499752..18500553,18500673..18500836) /locus_tag="TCM_013922" /note="paralog of Thecc1EG019584t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY21790.1" /db_xref="Phytozome:POPTR_1126s00200.1" /translation="MPPRRGRPPLYRSVGRGRGRARLSQLDPVERESAAPTFRAAPAV EPTEIPPPPPPPTATPGVHAMSLEAVQALAAFLNVIMGQAQAGRVPHTVPPAVSPVPP PPPLVPPPVPDVSISKKLKEARQLGCTSFVGDLDATAAKDWITQVTETFVDMKLDDDM KLMVATRLLEKRARTWWSSVKSRSITSLTWIDFLQQFDGQYYTYFHQKEKKREFLSLQ QGNLTIEEYEARFNELMSYVPDLVKSEQDQASYFEEGLRNEIRERMTVTXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWRFK" mobile_element complement(18501341..18501640) /note="source:scaffold_4_CACTA_0503 1277 1577" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18501686..18501817 /note="source:CACAO_M_E14312_F12_scaffold_3 15212 15324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18501784..18504581 /note="source:CACAO_M_E56826_F244_scaffold_8 4226 7019" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18504582..18504768) /note="source:scaffold_4_CACTA_0503 3054 3231" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18504597..18504788) /note="source:INTACT1818F_F49_scaffold_11-int 15523 15718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18508214..18509855 /note="source:INTACT216_F33_scaffold_5-int 3617 5256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18512521..18513329 /note="source:CACAO_M_E53452_F33_scaffold_8 7775 8583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18514149..18515192) /note="source:CACAO_M_E12297_F14_scaffold_3 6346 7392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18517195..18517338 /note="source:CACAO_M_S_E119615_F3_scaffold_9 1009 1171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18517687..18519213 /note="source:CACAO_M_S_E89272_F5_scaffold_8 6731 8217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18520047..18520227) /note="source:CACAO_M_E3884_F22_scaffold_1 12930 13129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18521509..18521983) /note="source:INTACT1818F_F49_scaffold_11-int 5511 5996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18523262..18523404) /note="source:CACAO_M_E3884_F22_scaffold_1 12980 13122" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18523843..18523894) /note="source:INTACT88_F12_scaffold_4-int 17097 17171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18523895..18526611 /note="source:CACAO_M_E22545_F73_scaffold_3 1 2717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18526515..18526623) /note="source:scaffold_4_CACTA_0503 3227 3334" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18526938..18537157 /note="source:INTACT676_F297_scaffold_3-int 1 10220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18537543..18537748 /note="source:CACAO_M_E3884_F22_scaffold_1 12924 13130" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18542072..18543016 /locus_tag="TCM_013925" /note="dbxref CacaoGD:Thecc1EG013925" mRNA join(18542072..18542237,18542747..18543016) /locus_tag="TCM_013925" /product="Basic helix-loop-helix DNA-binding family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014106" /inference="similar to AA sequence:ricco:30147.m014106" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3820t2" CDS join(18542124..18542237,18542747..18542902) /locus_tag="TCM_013925" /note="dbxref ricco:30147.m014106" /codon_start=1 /product="Basic helix-loop-helix DNA-binding family protein, putative" /protein_id="EOY21791.1" /translation="MSSQGSRASHKITDDELSALVLNLQALLPQLNQGRNGRASATKV LNETCSYIRKLQAEIDDLSERLSQCLGSMDITSLDAEILRNLLQQ" mobile_element complement(18551217..18552263) /note="source:CACAO_M_E33933_F9_scaffold_4 17402 18173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18551610..18554934 /note="source:CACAO_M_E43348_F5_scaffold_5 235 3574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18556445..18556685 /note="source:INTACT118_F5_scaffold_9-int 3675 3929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18556769..18557198 /note="source:CACAO_M_E3248_F5_scaffold_1 2696 3128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18559065..18565563) /note="source:INTACT83_F5_scaffold_9-int 1 6462" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18571076..18571281) /note="source:CACAO_M_E3884_F22_scaffold_1 12927 13131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18572106..18572434) /note="source:INTACT1373F_F385_scaffold_8-int 160 464" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18572893..18575080 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3510 5696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18575171..18581730 /note="source:INTACT213F_F15_scaffold_3-int 2243 8751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18589712..18589835 /note="source:CACAO_M_E9978_F12_scaffold_2 1030 1153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18589891..18590001) /note="source:INTACT189_F49_scaffold_5-int 17812 17921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18590953..18592191) /note="source:INTACT189_F49_scaffold_5-int 15830 17030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18593292..18594364) /note="source:CACAO_M_E11533_F12_scaffold_2 11893 12967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18595548..18595753) /note="source:INTACT39F_F22_scaffold_1-int 6960 7167" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18596737..18596819) /note="source:CACAO_M_E58819_F24_scaffold_9 15355 15433" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18600809..18602065) /locus_tag="TCM_013930" /note="dbxref CacaoGD:Thecc1EG013930" mRNA complement(18600809..18602065) /locus_tag="TCM_013930" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.66 coverage" CDS complement(18601308..18601556) /locus_tag="TCM_013930" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21792.1" /translation="MIYERVKLRAILNLPEDDTHLWIFITLRMALALENFYLMASEIY IFIGDQLFLLFIFESFHFSLVIEFNDDWMSGLKDFLVP" mobile_element complement(18602158..18602321) /note="source:INTACT39F_F22_scaffold_1-int 5530 5685" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18606000..18613110 /locus_tag="TCM_013931" /note="dbxref CacaoGD:Thecc1EG013931" mRNA join(18606000..18606110,18612048..18613110) /locus_tag="TCM_013931" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003832t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS join(18606108..18606110,18612048..18612380) /locus_tag="TCM_013931" /note="paralog of Thecc1EG003832t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21793.1" /translation="MATSDIRGCNGLIFPMSTNIIETAMAVGIRWSKVPGLLLRGSGS TCDYYAYLLESLVSFSTRTLLHGGELRLLCNSPCLNKSFQCLLNDHELVYVAVHIDFL SCHTFWDRA" mobile_element 18606251..18608605 /note="source:CACAO_M_S_E50960_F369_scaffold_4 12358 14736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18608601..18608640 /note="source:CACAO_M_S_E85177_F5_scaffold_7 20212 20251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18610985..18611174) /note="source:CACAO_M_E1841_F5_scaffold_1 15468 15650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18615492..18615947) /note="source:CACAO_M_E45017_F15_scaffold_6 8018 8426" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18618143..18619350 /note="source:CACAO_M_E56665_F15_scaffold_8 1768 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18621013..18622165) /note="source:CACAO_M_E13363_F273_scaffold_3 1812 2962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18622166..18624950 /note="source:CACAO_M_E22565_F15_scaffold_3 1 2785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18624951..18626763) /note="source:CACAO_M_E13363_F273_scaffold_3 1 1816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18631612..18631625) /note="source:CACAO_M_E3259_F15_scaffold_1 2976 2991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18631626..18634358 /note="source:CACAO_M_S_E32089_F15_scaffold_3 1 2733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18642181..18642527 /note="source:CACAO_M_E58819_F24_scaffold_9 14984 15315" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18642558..18643144) /note="source:INTACT642F_F365_scaffold_5-int 7853 8413" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18644102..18644656 /note="source:CACAO_M_E58962_F13_scaffold_9 11852 12424" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18644505..18645108) /note="source:INTACT642F_F365_scaffold_5-int 6107 6733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18645102..18645229) /note="source:CACAO_M_S_E64023_F13_scaffold_5 16486 16613" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18645456..18645553 /note="source:CACAO_M_S_E5046_F335_scaffold_1 20768 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18647239..18650893 /note="source:INTACT477_F225_scaffold_9-int 554 3758" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18650861..18651029 /note="source:INTACT545_F87_scaffold_5-int 4754 4920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18651013..18653416 /note="source:INTACT543_F86_scaffold_5-int 4662 7066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18653774..18655561 /note="source:CACAO_M_E34124_F86_scaffold_4 1108 2921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18655562..18656356 /note="source:INTACT477_F225_scaffold_9-int 3683 4512" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18656410..18656642 /note="source:INTACT477_F225_scaffold_9-int 4626 4843" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(18656861..18658395) /locus_tag="TCM_013932" /note="dbxref CacaoGD:Thecc1EG013932" mRNA complement(join(18656861..18657221,18657699..18657756, 18658026..18658395)) /locus_tag="TCM_013932" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene17339.2" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3640t1" CDS complement(join(18657060..18657221,18657699..18657756, 18658026..18658126)) /locus_tag="TCM_013932" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21794.1" /translation="MKSDGSSSSSPELAGSGGIIRDAFGEMITGYHMRAHSHFFIEEM RSSSQNRKPHKKHPSTPNLAAQVYNPSGGIIVMGYWLSLLSWILSGLISDLSVPSEEL SHEI" gene complement(18658676..18660139) /locus_tag="TCM_013933" /note="dbxref CacaoGD:Thecc1EG013933" mRNA complement(18658676..18660139) /locus_tag="TCM_013933" /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene25980" /inference="similar to AA sequence:Phytozome:POPTR_0001s08970.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3961t1" CDS complement(18658897..18659844) /locus_tag="TCM_013933" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /protein_id="EOY21795.1" /db_xref="Phytozome:POPTR_0001s08970.1" /db_xref="TAIR:AT3G47670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWF1" /translation="MAGWLVWNLSLHTAFVDLQLPAGLKLRVNTKWKTLVKSYLPTSS FPSINRSIAIQPPRHAAAFMSRPYHPNKARPKKLTMDPVNFFRGYDKVSHLENQNPSQ KPVSTALAIFAILIFTLVVGLTLAAVMLEPIKEPADTASPSLSSNSDESIRTICNVTR FPESCFTTLSSLSASTKPDPESILQLSLQVAINHLSNLSSSLKSLNDLHSQPALKDCV TLFDDALSRLNDSVSAMQVGSGKELVLTKEKISDIQTWISAAMSDQETCNDGLQEMGS TVADKVKSQVRSSKESISNSLAIVSNMHNLLQKFGLTMH" gene complement(18660179..18662067) /locus_tag="TCM_013934" /note="dbxref CacaoGD:Thecc1EG013934" mRNA complement(join(18660179..18660524,18661130..18661511, 18661978..18662067)) /locus_tag="TCM_013934" /product="Ribosomal protein S4" /inference="alignment:exonerate- protein:2:ricco:29822.m003493.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018488t1" /inference="similar to AA sequence:ricco:30147.m014108" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09308t00001" CDS complement(join(18660341..18660524,18661130..18661511, 18661978..18662005)) /locus_tag="TCM_013934" /note="dbxref ricco:30147.m014108; paralog of Thecc1EG018488t1" /codon_start=1 /product="Ribosomal protein S4" /protein_id="EOY21796.1" /db_xref="TAIR:AT5G39850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P55935" /translation="MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKREL WRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALT VENFLERRLQTLVFKAGMAKSIHHARVLIRQRHVRVGRQVVNIPSFMVRVDSQKHIDF SLTSPFGGGRPGRVKRRNQRAAAKKAAGGDGDEEDEE" mobile_element 18667133..18668627 /note="source:INTACT51_F23_scaffold_9-int 3136 4629" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18668669..18669501 /note="source:INTACT51_F23_scaffold_9-int 4614 5444" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18671020..18674635 /note="source:CACAO_on_E33_A_scaffold_3 7608 11195" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(18674670..18675019) /note="source:CACAO_on_E33_A_scaffold_3 11829 12191" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(18675316..18675835) /note="source:CACAO_on_E33_A_scaffold_3 11310 11840" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 18678323..18682758 /locus_tag="TCM_013936" /note="dbxref CacaoGD:Thecc1EG013936" mRNA join(18678323..18678456,18679766..18679834, 18679935..18680021,18680669..18680775,18680900..18681042, 18681151..18681215,18681584..18681697,18682318..18682758) /locus_tag="TCM_013936" /product="Microtubule end binding protein EB1A" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000693t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07120.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04168t00001" CDS join(18678349..18678456,18679766..18679834, 18679935..18680021,18680669..18680775,18680900..18681042, 18681151..18681215,18681584..18681697,18682318..18682431) /locus_tag="TCM_013936" /note="paralog of Thecc1EG000693t1" /codon_start=1 /product="Microtubule end binding protein EB1A" /protein_id="EOY21797.1" /db_xref="Phytozome:POPTR_0012s07120.1" /db_xref="TAIR:AT3G47690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XJ60" /translation="MASNIGMMDSAYFVGRNEILTWINNRLQLNLSRIEEAASGAVQC QMIDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQEVFNKLKIEKHIEVNRLVKGRPLD NLEFLQWLKRYCDSVNGGIMNENYNPVERRVKGGKERNSKGSHKSSKSLQANNLHNSA SGDIAGINKNSVSKQGKTGVAATSGDVQALSKEIADLKLSVDLLEKERDFYFAKLRDI EILCQTPEVENLPMAVAIKKILYAADAKESALEEAQEYISRSAESGETEE" gene 18683439..18689062 /locus_tag="TCM_013937" /note="dbxref CacaoGD:Thecc1EG013937" mRNA join(18683439..18683850,18685189..18686007, 18689037..18689062) /locus_tag="TCM_013937" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene22857" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS join(18683578..18683850,18685189..18685845) /locus_tag="TCM_013937" /note="dbxref frave:gene22857" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21798.1" /translation="MRYENGLIKIFFSKAIRVKDSSVAETKATREAFFLFAASKWSHS HKLIVESDSRNVAKWTSKPSDASWRIRKWVLHIERLKKEIKRWEIKHVNLIPFMVRTP TFSIIWNGTRTNTFSRTRGIRQGDPLSPYLFVLCLEKLSQLIDNKVWLGNWRPLLLTR NGPFLAHVCYADDLVLFRVTSTKQVQVMMKTLDRFYLVSGQKVGLSKWRLLVSSKVSP VKAKNLSSIAKTTLTKDFGKYHGAPATHERITQTTYSELINEVQLRMESWSNKYLSVA GRISLVQSVTSTTATYPMQTTFLLKTLSRRSIV" gene complement(18690997..18701841) /locus_tag="TCM_013938" /note="dbxref CacaoGD:Thecc1EG013938" mRNA complement(join(18690997..18691762,18692329..18692535, 18693792..18693938,18694663..18696729,18696811..18696999, 18697795..18697875,18699203..18699292,18700566..18700652, 18701213..18701538,18701750..18701841)) /locus_tag="TCM_013938" /product="Ran GTPase binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014110" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011750t2" /inference="similar to AA sequence:ricco:30147.m014110" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2302t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3655t2" mRNA complement(join(18690997..18691755,18692329..18692535, 18693792..18693938,18694663..18696729,18696811..18696999, 18697795..18697875,18699203..18699292,18700566..18700652, 18701213..18701541)) /locus_tag="TCM_013938" /product="Ran GTPase binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014110" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011750t2" /inference="similar to AA sequence:ricco:30147.m014110" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2302t1_C1; alternateUTRof:Thecc1EG013938t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3655t2" mRNA complement(join(18691019..18691755,18692329..18692538, 18693792..18693938,18694663..18696729,18696811..18696999, 18697795..18697875,18699203..18699292,18700566..18700652, 18701213..18701538,18701750..18701836)) /locus_tag="TCM_013938" /product="Ran GTPase binding protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014110" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011750t2" /inference="similar to AA sequence:ricco:30147.m014110" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3655t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3655t2" mRNA complement(join(18691019..18691762,18692329..18692620, 18693792..18693938,18694663..18696729,18696811..18696999, 18697795..18697875,18699203..18699292,18700566..18700652, 18701213..18701538,18701750..18701836)) /locus_tag="TCM_013938" /product="Ran GTPase binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014110" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011750t2" /inference="similar to AA sequence:ricco:30147.m014110" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3655t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3655t2" mRNA complement(join(18692230..18692620,18693792..18693938, 18694678..18696729,18696811..18696999,18697795..18697875, 18699203..18699292,18700566..18700652,18701213..18701538, 18701750..18701836)) /locus_tag="TCM_013938" /product="Ran GTPase binding protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m014110" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011750t2" /inference="similar to AA sequence:ricco:30147.m014110" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3655t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3655t2" CDS complement(join(18692507..18692620,18693792..18693938, 18694678..18696729,18696811..18696999,18697795..18697875, 18699203..18699292,18700566..18700652,18701213..18701260)) /locus_tag="TCM_013938" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m014110; paralog of Thecc1EG011750t2" /codon_start=1 /product="Ran GTPase binding protein, putative isoform 4" /protein_id="EOY21802.1" /db_xref="TAIR:AT5G19420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R984" /translation="MADFNRQILSDRDYEQAITTLKKGMYLLKYGRRGKPKFCPFSLS NDEKSLIWYSDKEKKQLELSHVSRIVPGQRTAIFQRYPQPDKEHQSFSLIYSNRSLDL ICKDRDEAEIWFTALKVLIWGGDNRRPKSDAISDNTSSESPCTYTQRNCLSNVSSTGC DIISKDPKDIQTASVPYESSQQCRLGKAFSEVLTYTSITKALTHTDSVAKHFSSLSLG GLDNPHGCSSVIDSFRSSLSSAVSSSSQGTSFEDFDALGDVFIWGEGTGNGPLGGSVH RTQTNSVTRVDSLSPKALESNVLLDAHNISCGNKHAVLVTRQGRIFSWGEGSGGRLGH GVEADVSQPMLIGALSWSTIGLVACGEFHTCAVTLSGDLYTWGDGSYNLGLLGHGTEA SKWTPKRVSGEMEGMHVSYISCGAWHTAAVTSTGKLFTFGDGTFGALGHGDRSSTNMP REVDALRGLRTLRASCGVWHTAAIVEVPTETSGAFSSGKLFTWGDGEKGQLGHGDKEP RLVPFLVALSDTISFSQVACGHSITVALTDTGKVYSMGSVGPGQLGSSGSSKLPTCVK GNIKNSRIEEIACGSHHIVVRSSDAKVYTWGKGANGQLGHGDNADRNVPTLVDALQNK RVKRVVCGSNFTAAICLHDWALGADHFNCFGCRNPFSFIRKRHNCYNCGLVFCKACSC KKSLKAALAPNMNKPYRVCDDCFTKLNRKKESRSTPEFVKNSRESLNQNSNELPEKDT LNLKSLRKLARLASFDSFRQTRSQNSKHDRRVLNENSQWESTSLFGNSTRISASSSGS RMVSRGSSPPSRKSSPAYYITRTSIHTNLANPELLFNGSKHSVESLTQEIGVEDLTVK SQVLEEKLERTSRQLKEAVGTAHEEAEKNKASKEVIRSLTVQLKKMAGRAPDNQLHLG TEFHSLNSHSCSELKISQRHD" CDS complement(join(18692507..18692620,18693792..18693938, 18694663..18696729,18696811..18696999,18697795..18697875, 18699203..18699292,18700566..18700652,18701213..18701260)) /locus_tag="TCM_013938" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014110; paralog of Thecc1EG011750t2" /codon_start=1 /product="Ran GTPase binding protein, putative isoform 1" /protein_id="EOY21799.1" /db_xref="TAIR:AT5G19420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R984" /translation="MADFNRQILSDRDYEQAITTLKKGMYLLKYGRRGKPKFCPFSLS NDEKSLIWYSDKEKKQLELSHVSRIVPGQRTAIFQRYPQPDKEHQSFSLIYSNRSLDL ICKDRDEAEIWFTALKVLIWGGDNRRPKSDAISDNTSSESPCTYTQRNCLSNVSSTGC DIISKDPKDIQTASVPYESSQQCRLGKAFSEVLTYTSITKALTHTDSVAKHFSSLSLG GLDNPHGCSSVIDSFRSSLSSAVSSSSQGTSFEDFDALGDVFIWGEGTGNGPLGGSVH RTQTNSVTRVDSLSPKALESNVLLDAHNISCGNKHAVLVTRQGRIFSWGEGSGGRLGH GVEADVSQPMLIGALSWSTIGLVACGEFHTCAVTLSGDLYTWGDGSYNLGLLGHGTEA SKWTPKRVSGEMEGMHVSYISCGAWHTAAVTSTGKLFTFGDGTFGALGHGDRSSTNMP REVDALRGLRTLRASCGVWHTAAIVEVPTETSGAFSSGKLFTWGDGEKGQLGHGDKEP RLVPFLVALSDTISFSQVACGHSITVALTDTGKVYSMGSVGPGQLGSSGSSKLPTCVK GNIKNSRIEEIACGSHHIVVRSSDAKVYTWGKGANGQLGHGDNADRNVPTLVDALQNK RVKRVVCGSNFTAAICLHDWALGADHFNCFGCRNPFSFIRKRHNCYNCGLVFCKACSC KKSLKAALAPNMNKPYRVCDDCFTKLNRKKESRSTPEFVKNSRESLNQNSNELPEKDT LNLKSLRKLARLASFDSFRQTRSQNSKHDRRVLNENSQWESTSLFGNSTRISASSSGS RMVSRGSSPPSRKSSPAYYITRTSIHTNLANPELLFNGSKHSVESLTQEIGILRAQVE DLTVKSQVLEEKLERTSRQLKEAVGTAHEEAEKNKASKEVIRSLTVQLKKMAGRAPDN QLHLGTEFHSLNSHSCSELKISQRHD" CDS complement(join(18692530..18692535,18693792..18693938, 18694663..18696729,18696811..18696999,18697795..18697875, 18699203..18699292,18700566..18700652,18701213..18701260)) /locus_tag="TCM_013938" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014110; paralog of Thecc1EG011750t2" /codon_start=1 /product="Ran GTPase binding protein, putative isoform 2" /protein_id="EOY21800.1" /db_xref="TAIR:AT5G19420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R984" /translation="MADFNRQILSDRDYEQAITTLKKGMYLLKYGRRGKPKFCPFSLS NDEKSLIWYSDKEKKQLELSHVSRIVPGQRTAIFQRYPQPDKEHQSFSLIYSNRSLDL ICKDRDEAEIWFTALKVLIWGGDNRRPKSDAISDNTSSESPCTYTQRNCLSNVSSTGC DIISKDPKDIQTASVPYESSQQCRLGKAFSEVLTYTSITKALTHTDSVAKHFSSLSLG GLDNPHGCSSVIDSFRSSLSSAVSSSSQGTSFEDFDALGDVFIWGEGTGNGPLGGSVH RTQTNSVTRVDSLSPKALESNVLLDAHNISCGNKHAVLVTRQGRIFSWGEGSGGRLGH GVEADVSQPMLIGALSWSTIGLVACGEFHTCAVTLSGDLYTWGDGSYNLGLLGHGTEA SKWTPKRVSGEMEGMHVSYISCGAWHTAAVTSTGKLFTFGDGTFGALGHGDRSSTNMP REVDALRGLRTLRASCGVWHTAAIVEVPTETSGAFSSGKLFTWGDGEKGQLGHGDKEP RLVPFLVALSDTISFSQVACGHSITVALTDTGKVYSMGSVGPGQLGSSGSSKLPTCVK GNIKNSRIEEIACGSHHIVVRSSDAKVYTWGKGANGQLGHGDNADRNVPTLVDALQNK RVKRVVCGSNFTAAICLHDWALGADHFNCFGCRNPFSFIRKRHNCYNCGLVFCKACSC KKSLKAALAPNMNKPYRVCDDCFTKLNRKKESRSTPEFVKNSRESLNQNSNELPEKDT LNLKSLRKLARLASFDSFRQTRSQNSKHDRRVLNENSQWESTSLFGNSTRISASSSGS RMVSRGSSPPSRKSSPAYYITRTSIHTNLANPELLFNGSKHSVESLTQEIGILRAQVE DLTVKSQVLEEKLERTSRQLKEAVGTAHEEAEKNKASKEVIRSLTVQS" CDS complement(join(18692530..18692535,18693792..18693938, 18694663..18696729,18696811..18696999,18697795..18697875, 18699203..18699292,18700566..18700652,18701213..18701260)) /locus_tag="TCM_013938" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30147.m014110; paralog of Thecc1EG011750t2" /codon_start=1 /product="Ran GTPase binding protein, putative isoform 2" /protein_id="EOY21803.1" /db_xref="TAIR:AT5G19420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R984" /translation="MADFNRQILSDRDYEQAITTLKKGMYLLKYGRRGKPKFCPFSLS NDEKSLIWYSDKEKKQLELSHVSRIVPGQRTAIFQRYPQPDKEHQSFSLIYSNRSLDL ICKDRDEAEIWFTALKVLIWGGDNRRPKSDAISDNTSSESPCTYTQRNCLSNVSSTGC DIISKDPKDIQTASVPYESSQQCRLGKAFSEVLTYTSITKALTHTDSVAKHFSSLSLG GLDNPHGCSSVIDSFRSSLSSAVSSSSQGTSFEDFDALGDVFIWGEGTGNGPLGGSVH RTQTNSVTRVDSLSPKALESNVLLDAHNISCGNKHAVLVTRQGRIFSWGEGSGGRLGH GVEADVSQPMLIGALSWSTIGLVACGEFHTCAVTLSGDLYTWGDGSYNLGLLGHGTEA SKWTPKRVSGEMEGMHVSYISCGAWHTAAVTSTGKLFTFGDGTFGALGHGDRSSTNMP REVDALRGLRTLRASCGVWHTAAIVEVPTETSGAFSSGKLFTWGDGEKGQLGHGDKEP RLVPFLVALSDTISFSQVACGHSITVALTDTGKVYSMGSVGPGQLGSSGSSKLPTCVK GNIKNSRIEEIACGSHHIVVRSSDAKVYTWGKGANGQLGHGDNADRNVPTLVDALQNK RVKRVVCGSNFTAAICLHDWALGADHFNCFGCRNPFSFIRKRHNCYNCGLVFCKACSC KKSLKAALAPNMNKPYRVCDDCFTKLNRKKESRSTPEFVKNSRESLNQNSNELPEKDT LNLKSLRKLARLASFDSFRQTRSQNSKHDRRVLNENSQWESTSLFGNSTRISASSSGS RMVSRGSSPPSRKSSPAYYITRTSIHTNLANPELLFNGSKHSVESLTQEIGILRAQVE DLTVKSQVLEEKLERTSRQLKEAVGTAHEEAEKNKASKEVIRSLTVQS" CDS complement(join(18692530..18692538,18693792..18693938, 18694663..18696729,18696811..18696999,18697795..18697875, 18699203..18699292,18700566..18700652,18701213..18701260)) /locus_tag="TCM_013938" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014110; paralog of Thecc1EG011750t2" /codon_start=1 /product="Ran GTPase binding protein, putative isoform 3" /protein_id="EOY21801.1" /db_xref="TAIR:AT5G19420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R984" /translation="MADFNRQILSDRDYEQAITTLKKGMYLLKYGRRGKPKFCPFSLS NDEKSLIWYSDKEKKQLELSHVSRIVPGQRTAIFQRYPQPDKEHQSFSLIYSNRSLDL ICKDRDEAEIWFTALKVLIWGGDNRRPKSDAISDNTSSESPCTYTQRNCLSNVSSTGC DIISKDPKDIQTASVPYESSQQCRLGKAFSEVLTYTSITKALTHTDSVAKHFSSLSLG GLDNPHGCSSVIDSFRSSLSSAVSSSSQGTSFEDFDALGDVFIWGEGTGNGPLGGSVH RTQTNSVTRVDSLSPKALESNVLLDAHNISCGNKHAVLVTRQGRIFSWGEGSGGRLGH GVEADVSQPMLIGALSWSTIGLVACGEFHTCAVTLSGDLYTWGDGSYNLGLLGHGTEA SKWTPKRVSGEMEGMHVSYISCGAWHTAAVTSTGKLFTFGDGTFGALGHGDRSSTNMP REVDALRGLRTLRASCGVWHTAAIVEVPTETSGAFSSGKLFTWGDGEKGQLGHGDKEP RLVPFLVALSDTISFSQVACGHSITVALTDTGKVYSMGSVGPGQLGSSGSSKLPTCVK GNIKNSRIEEIACGSHHIVVRSSDAKVYTWGKGANGQLGHGDNADRNVPTLVDALQNK RVKRVVCGSNFTAAICLHDWALGADHFNCFGCRNPFSFIRKRHNCYNCGLVFCKACSC KKSLKAALAPNMNKPYRVCDDCFTKLNRKKESRSTPEFVKNSRESLNQNSNELPEKDT LNLKSLRKLARLASFDSFRQTRSQNSKHDRRVLNENSQWESTSLFGNSTRISASSSGS RMVSRGSSPPSRKSSPAYYITRTSIHTNLANPELLFNGSKHSVESLTQEIGILRAQVE DLTVKSQVLEEKLERTSRQLKEAVGTAHEEAEKNKASKEVIRSLTVQQS" gene complement(18702710..18705102) /locus_tag="TCM_013939" /note="dbxref CacaoGD:Thecc1EG013939" mRNA complement(join(18702710..18702961,18703176..18703419, 18704204..18704326,18704453..18704479,18704823..18705102)) /locus_tag="TCM_013939" /product="HVA22 A" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g01160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011751t1" /inference="similar to AA sequence:frave:gene25984" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8466t2" CDS complement(join(18702905..18702961,18703176..18703419, 18704204..18704326,18704453..18704479,18704823..18704884)) /locus_tag="TCM_013939" /note="dbxref frave:gene25984; paralog of Thecc1EG011751t1" /codon_start=1 /product="HVA22 A" /protein_id="EOY21804.1" /db_xref="TAIR:AT1G74520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YUX5" /translation="MGSGAASFLKVLLKNFDVLAGPVISLLYPLYASVRAIESESRAD DRQWLTYWVLYSMITLLELTFAKVIEWIPIWSYTKLIFTCWLVIPYFSGAAYVYEHYL RPFFINPQQTINIWYIPRKKDFSKPDDILTAAERYIEENGTEAFEKLIHRADKSRSSG YIYDDDGYRH" gene complement(18705331..18708037) /locus_tag="TCM_013940" /note="dbxref CacaoGD:Thecc1EG013940" mRNA complement(join(18705331..18706087,18706199..18706326, 18706521..18706636,18707234..18707336,18707961..18708009)) /locus_tag="TCM_013940" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g01150.1" /inference="similar to AA sequence:frave:gene25984" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc182t7" mRNA complement(join(18705453..18706087,18706199..18706326, 18706521..18706636,18707234..18707351,18707961..18708037)) /locus_tag="TCM_013940" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g01150.1" /inference="similar to AA sequence:frave:gene25984" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3719t1; alternateUTRof:Thecc1EG013940t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc182t7" CDS complement(join(18705647..18706087,18706199..18706326, 18706521..18706636,18707234..18707301)) /locus_tag="TCM_013940" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene25984" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY21805.1" /db_xref="TAIR:AT3G47640.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID69" /translation="MGSEAPAPLVEKTIAAVETSVGRSCAPKTKGKVPRRIHKAEREK LKREHLNELFLDLANALDPNQPNNGKASILCEATRLLKDLFGQIETLKKENACLLSES HYVSIEKNELKEENSTLETQIQKLQSEIGTRVAQSKPDLNEPPLGFQQSELSSHFRGD RPGLPAVEPALQQASALLVVPIHPDIQAYPVPDSMQPTANTNSIVSKPHARYPTPADS WPSQLLGKQSAIRNEFGLDDISRSGDRGAANL" CDS complement(join(18705647..18706087,18706199..18706326, 18706521..18706636,18707234..18707301)) /locus_tag="TCM_013940" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene25984" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY21806.1" /db_xref="TAIR:AT3G47640.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID69" /translation="MGSEAPAPLVEKTIAAVETSVGRSCAPKTKGKVPRRIHKAEREK LKREHLNELFLDLANALDPNQPNNGKASILCEATRLLKDLFGQIETLKKENACLLSES HYVSIEKNELKEENSTLETQIQKLQSEIGTRVAQSKPDLNEPPLGFQQSELSSHFRGD RPGLPAVEPALQQASALLVVPIHPDIQAYPVPDSMQPTANTNSIVSKPHARYPTPADS WPSQLLGKQSAIRNEFGLDDISRSGDRGAANL" gene complement(18711848..18717535) /locus_tag="TCM_013941" /note="dbxref CacaoGD:Thecc1EG013941" mRNA complement(join(18711848..18712268,18713627..18713707, 18714550..18714615,18714842..18714919,18715020..18715133, 18715223..18715274,18716002..18716066,18716150..18716316, 18716962..18717535)) /locus_tag="TCM_013941" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s08330.1" /inference="similar to AA sequence:ricco:30147.m014113" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b013475t1a3; inference alignment:Newbler:10:TSA:cgbaP1_g03872t00001" mRNA complement(join(18711848..18712268,18714550..18714615, 18714842..18714919,18715020..18715133,18715223..18715311, 18715510..18715550,18716002..18716066,18716150..18716316, 18716962..18717535)) /locus_tag="TCM_013941" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s08330.1" /inference="similar to AA sequence:ricco:30147.m014113" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b013475t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g03872t00001" mRNA complement(join(18711848..18712268,18713627..18713707, 18714550..18714615,18714842..18714919,18715020..18715133, 18715223..18715311,18715510..18715550,18716002..18716066, 18716150..18716316,18716962..18717535)) /locus_tag="TCM_013941" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s08330.1" /inference="similar to AA sequence:ricco:30147.m014113" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03872t00001" mRNA complement(join(18711941..18712268,18713627..18713707, 18714550..18714615,18714842..18714919,18715020..18715086, 18716038..18716066,18716150..18716316,18716959..18717473)) /locus_tag="TCM_013941" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s08330.1" /inference="similar to AA sequence:ricco:30147.m014113" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1332t2; inference alignment:Newbler:10:TSA:cgbaP1_g03872t00001" CDS complement(join(18712167..18712268,18713627..18713707, 18714550..18714615,18714842..18714919,18715020..18715133, 18715223..18715274,18716002..18716066,18716150..18716316, 18716962..18717091)) /locus_tag="TCM_013941" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m014113" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY21810.1" /db_xref="TAIR:AT1G74530.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YYL0" /translation="MVMGRVRNWWNHSKTVAFIWFFSLALFYSLFQMALQNSTSPSSD SGISNNQRRSIMYDKMARDLDERGAAFLKHGETSQSLSLSDLFTLKDGSVRPVLKAVN PPVRANVLYMSTEYSVPISMFHASHHIAPVPASEVEIEAEVAAVRAVAEGLCPLEIVL DRVILTSTGVLLGCWQVISGTDPISIRAMLRTALPRAPEKQLYDAAILHTSFARLLGH PKASLMDPDNTSKQLELFHKLVTQLNNKIHGFKAVVSQLWYVEEYDVLALALNGRMKV RRFQLGCS" CDS complement(join(18712167..18712268,18714550..18714615, 18714842..18714919,18715020..18715133,18715223..18715311, 18715510..18715550,18716002..18716066,18716150..18716316, 18716962..18717091)) /locus_tag="TCM_013941" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014113" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21808.1" /db_xref="TAIR:AT1G74530.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YYL0" /translation="MVMGRVRNWWNHSKTVAFIWFFSLALFYSLFQMALQNSTSPSSD SGISNNQRRSIMYDKMARDLDERGAAFLKHGETSQSLSLSDLFTLKDGSVRPVLKAVN PPVRANVLYMSTEYSVPISEAVKQVFDPYFDKAIWFQNSSLYHFSMFHASHHIAPVPA SEVEIEAEVAAVRAVAEGLCPLEIVLDRVILTSTGVLLGCWQVISGTDPISIRAMLRT ALPRAPEKQLYDAAILHTSFARLLGHPKASLMAVVSQLWYVEEYDVLALALNGRMKVR RFQLGCS" CDS complement(join(18712167..18712268,18713627..18713707, 18714550..18714615,18714842..18714919,18715020..18715133, 18715223..18715311,18715510..18715550,18716002..18716066, 18716150..18716316,18716962..18717091)) /locus_tag="TCM_013941" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014113" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21807.1" /db_xref="TAIR:AT1G74530.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YYL0" /translation="MVMGRVRNWWNHSKTVAFIWFFSLALFYSLFQMALQNSTSPSSD SGISNNQRRSIMYDKMARDLDERGAAFLKHGETSQSLSLSDLFTLKDGSVRPVLKAVN PPVRANVLYMSTEYSVPISEAVKQVFDPYFDKAIWFQNSSLYHFSMFHASHHIAPVPA SEVEIEAEVAAVRAVAEGLCPLEIVLDRVILTSTGVLLGCWQVISGTDPISIRAMLRT ALPRAPEKQLYDAAILHTSFARLLGHPKASLMDPDNTSKQLELFHKLVTQLNNKIHGF KAVVSQLWYVEEYDVLALALNGRMKVRRFQLGCS" CDS complement(join(18712167..18712268,18713627..18713707, 18714550..18714615,18714842..18714919,18715020..18715086, 18716038..18716066,18716150..18716316,18716959..18717091)) /locus_tag="TCM_013941" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30147.m014113" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY21811.1" /db_xref="TAIR:AT1G74530.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YYL0" /translation="MVMGRVRNWWNHSKTVAFIWFFSLALFYSLFQMALQNSTSPSSG NSGISNNQRRSIMYDKMARDLDERGAAFLKHGETSQSLSLSDLFTLKDGSVRPVLKAV NPPVRANVPLEIVLDRVILTSTGVLLGCWQVISGTDPISIRAMLRTALPRAPEKQLYD AAILHTSFARLLGHPKASLMDPDNTSKQLELFHKLVTQLNNKIHGFKAVVSQLWYVEE YDVLALALNGRMKVRRFQLGCS" mRNA complement(join(<18713625..18713707,18714550..18714615, 18714842..18714919,18715020..18715133,18715223..18715311, 18715510..18715550,18716002..18716066,18716150..18716316, 18717319..18717473)) /locus_tag="TCM_013941" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s08330.1" /inference="similar to AA sequence:ricco:30147.m014113" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1205t11; inference alignment:Newbler:10:TSA:cgbaP1_g03872t00001" CDS complement(join(<18713627..18713707,18714550..18714615, 18714842..18714919,18715020..18715133,18715223..18715311, 18715510..18715550,18716002..18716066,18716150..18716281)) /locus_tag="TCM_013941" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014113" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY21809.1" /db_xref="TAIR:AT1G74530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YYL0" /translation="MYDKMARDLDERGAAFLKHGETSQSLSLSDLFTLKDGSVRPVLK AVNPPVRANVLYMSTEYSVPISEAVKQVFDPYFDKAIWFQNSSLYHFSMFHASHHIAP VPASEVEIEAEVAAVRAVAEGLCPLEIVLDRVILTSTGVLLGCWQVISGTDPISIRAM LRTALPRAPEKQLYDAAILHTSFARLLGHPKASLMDPDNTSKQLELFHKLVTQLNNKI HGFK" gene complement(18723218..18725109) /locus_tag="TCM_013943" /note="dbxref CacaoGD:Thecc1EG013943" mRNA complement(18723218..18725109) /locus_tag="TCM_013943" /product="TCP domain-like protein I" /inference="alignment:exonerate- protein:2:ricco:30147.m014114" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011752t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04600.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3669t1" CDS complement(18723681..18724880) /locus_tag="TCM_013943" /note="paralog of Thecc1EG011752t1" /codon_start=1 /product="TCP domain-like protein I" /protein_id="EOY21812.1" /db_xref="Phytozome:POPTR_0004s04600.1" /db_xref="TAIR:AT3G47620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B0KYV1" /translation="MEGGGSDDHHLHHHHHLHHHHRPNFPFQLLEKKEEDNQPCSSSS SPPFPSLPASSSNDQPNTTRPISSLQISPEPSKKPPPKRTSTKDRHTKVDGRGRRIRM PALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSS GSSMSVPSQLRSSGFNSNFSMQQRRSLFPGIGLETTPAFLNFQSSSNLNSMFQAKQEL RDNSTSLEISETEEGTLGRKRRPEPDLSSQHQMGSYLLQSSTGAIPASHGQIPANFWM VTNSNNQVMSGDPIWTFPSVNNSALYRGTMSSGLHFMNFPAPMALLPGQQLGSSGVTS GGGSGGSSGISEGHLNMLAGLNPYRQVSGIGVSESQASGSHSHHGGGGGGGGCGDDRH DTTSHHS" gene complement(18728589..18729635) /locus_tag="TCM_013944" /note="dbxref CacaoGD:Thecc1EG013944" mRNA complement(18728589..18729635) /locus_tag="TCM_013944" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(18729046..18729291) /locus_tag="TCM_013944" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21813.1" /translation="MKSIKSESGPYEKISPHHPFQIASRLMSVGPAPQQMTTLLSSES QPVGAWRLNCLLQRHTYISGKACGLRKGNIGQSHLIL" gene 18734137..18736721 /locus_tag="TCM_013945" /note="dbxref CacaoGD:Thecc1EG013945" mRNA join(18734137..18734337,18734917..18735515, 18735675..18735931,18736344..18736721) /locus_tag="TCM_013945" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(18735492..18735515,18735675..18735923) /locus_tag="TCM_013945" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21814.1" /translation="MGRKLEIEDRAQVYDNLKLWVMWWANVKRPRLNISSMDLERMLN IGVVPIKIKASKTIEAWQPFPRRFVKFNVDEASKDKSGEVGIFEES" mobile_element 18741170..18741583 /note="source:INTACT733_F316_scaffold_2-int 1 426" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18741578..18746027 /note="source:INTACT733_F316_scaffold_2-int 689 4880" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18746028..18746320 /note="source:CACAO_M_S_E32092_F15_scaffold_3 1 281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18746833..18749736 /note="source:CACAO_M_S_E32092_F15_scaffold_3 1 2886" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18749702..18757100) /locus_tag="TCM_013947" /note="dbxref CacaoGD:Thecc1EG013947" mRNA complement(join(18749702..18749973,18755557..18755976, 18756157..18756255,18756346..18756478,18756605..18757100)) /locus_tag="TCM_013947" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07100.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07100.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13874t00001" mobile_element complement(18752705..18752815) /note="source:INTACT189_F49_scaffold_5-int 17862 17960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18755180..18755246 /note="source:CACAO_M_E5899_F5_scaffold_2 20718 20786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18755187..18755247 /note="source:scaffold_3_CACTA_0382 1857 1918" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18755193..18755257) /note="source:scaffold_3_CACTA_0382 1852 1917" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(18755707..18755976,18756157..18756255, 18756346..18756478,18756605..18756960)) /locus_tag="TCM_013947" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein, putative" /protein_id="EOY21815.1" /db_xref="Phytozome:POPTR_0012s07100.1" /db_xref="TAIR:AT3G19010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7X6V7" /translation="MADPRIPTVDLSPFFTEDDEDGKKKAMEVISKACSEHGFFQIVN HGVPMESLQRALELSRIFLEYPAEEKLKSSSASDAPLPAGYNTRPQHSPDKNEYLLML PPGSSFNVFPDNPSEFKEVLEDVFSNLTKTGLLVESIVNQCLGLPLNFLKEFNNDRSW DLMDEAGGLQVCQDGEWIPVIPTEGTLVVNISDVIQVLSNNKFKSATHRVVRPKGRSR YSLAFFYNLQGDKWVEPLPQFTKDIGEAPKYRGFHYKEYLQLRVRNKTHPPARPGDEI RITHYKINT" gene complement(18757272..18762695) /locus_tag="TCM_013948" /note="dbxref CacaoGD:Thecc1EG013948" mRNA complement(join(18757272..18758144,18759936..18759980, 18760090..18760146,18760263..18760323,18760771..18760832, 18760922..18761032,18761190..18761261,18761440..18761490, 18761586..18761708,18761814..18761846,18762306..18762695)) /locus_tag="TCM_013948" /product="NAP1-related protein 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008022001" /inference="similar to AA sequence:Phytozome:GSVIVT01008022001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8558t1" CDS complement(join(18758067..18758144,18759936..18759980, 18760090..18760146,18760263..18760323,18760771..18760832, 18760922..18761032,18761190..18761261,18761440..18761490, 18761586..18761708,18761814..18761846,18762306..18762434)) /locus_tag="TCM_013948" /codon_start=1 /product="NAP1-related protein 2" /protein_id="EOY21816.1" /db_xref="Phytozome:GSVIVT01008022001" /db_xref="TAIR:AT1G18800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D4I4V6" /translation="MVADKGKKMKLAEKGEEENSEQIDGDLVLSIEKLQEIQDELEKV VMFLCPIVEKINEEASEKVLEVEQKYNEIRKPVYDKRNDIIKSIPDFWLTAFLSHPAL GELLTEEDQKIFKHISSLEVEDFKDLKSGYSITFNFNPNPYFEDTKLTKTFTFLDEGT KITATQIKWKEGMGLPNGVNHEKKGNKRQFAEESFFTWFTDAQQKDDMDEIHDEVAEI IKEDLWPNPLTYFNNEADEEDFDGEEGDEEGKDDDDSDDDDDPDDEDDDDGDDDN" gene 18763624..18773108 /locus_tag="TCM_013950" /note="dbxref CacaoGD:Thecc1EG013950" mRNA join(18763624..18764119,18765458..18765599, 18767023..18767131,18767219..18767372,18767836..18768216, 18770822..18770925,18772744..18773108) /locus_tag="TCM_013950" /product="Ribonuclease H-like protein" /inference="alignment:exonerate- protein:2:ricco:29763.m000196.3" /inference="similar to AA sequence:ricco:30000.m000388" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete" CDS join(18763993..18764119,18765458..18765599, 18767023..18767131,18767219..18767372,18767836..18768216, 18770822..18770889) /locus_tag="TCM_013950" /note="dbxref ricco:30000.m000388" /codon_start=1 /product="Ribonuclease H-like protein" /protein_id="EOY21817.1" /translation="MRVAKKEGKSPDKLGSVRPQIISLKKKARAKGAIISTPTTMLNN GTLPSYPIKGTFPILNDEDYLRLMHPVESKEVYDALFEIKPLKAPRWAIRNGMSVNFW KDKWLGDKMLANITYRVANLALDKVLQIMPPTLAISQDVPYWGVSVSSKFTIASAYDY LRQLSSPTDVNSSGMWQEEVLIGWRAPQVGWVCINMDGAYKKSIDEAFAGGVIRNSEG DWRTGFVAKLGKCLAYRAELWGVLHDLRLAWDSRFKKVMVQVDNKMVVQAILMDKLLP CANTDLIRAIKDILQKEWEVHFVHIYREDNNSCSGILNTTMLWFQQSSEA" mobile_element 18768392..18768669 /note="source:scaffold_4_CACTA_0483 15099 15349" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18769563..18769602 /note="source:CACAO_M_E42343_F106_scaffold_5 6732 6772" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(18773626..18775865) /locus_tag="TCM_013951" /note="dbxref CacaoGD:Thecc1EG013951" mRNA complement(18773626..18775865) /locus_tag="TCM_013951" /product="Phytochrome kinase substrate 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07390.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s07390.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4552t1" CDS complement(18773978..18775363) /locus_tag="TCM_013951" /codon_start=1 /product="Phytochrome kinase substrate 1, putative" /protein_id="EOY21818.1" /db_xref="Phytozome:POPTR_0015s07390.1" /translation="MSLTMDGEKRNTSLGEVSFSSYLSTAEEIFVHKLAEPAIQQPHP AIAPNIGIHAPARLERNKTEEGEISVFRAEKYFNMKLDDYSPKLDDKYANKRCLQMEN QVDLHQMTPRRWPGTPSVSSDASWNSQTALLRSFMRNRSENKQKKVDGRSFFSNLSCT GSCSDGKSVYVNQNLDHGRVHGKEKRKEPIQINHRYTNMARRKLPQAKFQVKDEFDSQ SFDKMSVGSNREVYFGPPVLKPGLHNVTVKTQFDDPRKSLEVFGSSAVKKGDIAKNLE RKLSMLTWDAIPNAPTISSISRSSQACDDIESDASSDLFEIDNISGSGQALFTRQESD GMSSCMTPYAPSETSIEWSVVTASAADSSFVSDYHEKKPAENSRAPGSKTASRVANAK VLPDKEAQKSRTGGMLGCKSHKAVMVAETAYRSDEKSKPSHLHHLPNSATPMSARLLQ ADIKVKDLDFP" gene complement(18776495..18783759) /locus_tag="TCM_013952" /note="dbxref CacaoGD:Thecc1EG013952" mRNA complement(join(18776495..18777691,18777961..18778038, 18779737..18780126,18780529..18780817,18781295..18781505, 18782311..18782964,18783528..18783759)) /locus_tag="TCM_013952" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011720t1" /inference="similar to AA sequence:ricco:30147.m014121" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00771t00002" CDS complement(join(18777457..18777691,18777961..18778038, 18779737..18780126,18780529..18780817,18781295..18781505, 18782311..18782955)) /locus_tag="TCM_013952" /note="dbxref ricco:30147.m014121; paralog of Thecc1EG011720t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /protein_id="EOY21819.1" /db_xref="TAIR:AT1G26850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q60D37" /translation="MATKGNTGELKTRSSVSIFIVVGLCCFFFILGAWQRSGFGKGDR IASEITRQTDCSILSNLNYETHHGGDTATIDGSDSAAKDFQPCDDKYVDYTPCQDQMR AMMFPRENMNYRERHCPPEEEKLHCLVPAPKGYATPFPWPKSRDYVPFANAPYKSLTV EKAVQNWIQYEGNVFRFPGGGTQFPQGADTYINELASVIPLDNGMVRTALDTGCGVAS LGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIMMPYPSRAFDMAHCS RCLIPWGANDGIYMMEVDRVLRPGGYWVLSGPPINWRNNYQSWQRPKEELEEEQRKIE EIAKLLCWEKKHEMGEIAVWRKRTNYALCRQQDAKLTACEMRNPDDVWYKKTEACATP YPETSGPDEVAGGEWKQFPERLNAVPFRISSGSIPGVSVETYQEDVRLWKKHVNAYKR INSIIDSGRYRNIMDMNAGLGSFAAALESPKLWVMNVMPTIAEKDTLGIIYERGLIGI YHDWCEAFSTYPRTYDLIHAKSIFSLYKNKCNVEDILLEMDRILRPEGTVIIRDQVDE LMKVKKIVGGMRWNTRMVDHEDGPLVSEKILFAVKRYWVAGESNTTSME" gene complement(18784399..18787354) /locus_tag="TCM_013953" /note="dbxref CacaoGD:Thecc1EG013953" mRNA complement(join(18784399..18785049,18785410..18786279, 18787002..18787354)) /locus_tag="TCM_013953" /product="Transcription regulators,zinc ion binding isoform 3" /inference="similar to AA sequence:Phytozome:Glyma17g10780.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b013487t1a2" mRNA complement(join(18784399..18785049,18785410..18785508, 18785596..18786279,18787002..18787349)) /locus_tag="TCM_013953" /product="Transcription regulators,zinc ion binding isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g10780.1" /inference="similar to AA sequence:ricco:30147.m014123" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc187t3" mobile_element complement(18784598..18784653) /note="source:scaffold_9_CACTA_0921 1067 1122" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(18784675..18785049,18785410..18785508, 18785596..18786039,18786147..18786279,18787002..18787346)) /locus_tag="TCM_013953" /product="Transcription regulators,zinc ion binding isoform 2" /inference="similar to AA sequence:Phytozome:GSVIVT01008019001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00981t00002" CDS complement(join(18784771..18785049,18785410..18785508, 18785596..18786279,18787002..18787157)) /locus_tag="TCM_013953" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014123" /codon_start=1 /product="Transcription regulators,zinc ion binding isoform 1" /protein_id="EOY21820.1" /db_xref="TAIR:AT3G47610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2Y9" /translation="METPGDWLEKALVELCNKIETGLGLDLDGEIISGLVSYCEMAQP LDAKEYLDNFIGQEAGKSVTEEYLRRRGHTDPCSGSSAIPTSKLQAYVKPPSGESSVS GTKKQFKTPKEATGSSHQAEPKKNAISGNQENRALNAAIDSRNNHKGNQGNSKKKKAG KVVSLAEAAKGSIVFQQGKPCLCQARRHRLISNCLSCGKIVCEQEGEGPCNFCGALVL REGSTYAGLEGSFTPLSDAEAAAEAYAKRLVEYDRNSAARTTVIDDQSDYYEIDSNSW LSKEEKELLKKKQEEIEEAERLKRSKVVVTFDLVGRKVLLNEDEVSELESENRILLRP PDEREMNRIKPNPNLRVQPVFLNPAPSKKPSKSKQPSKSPANGLCLEITGRVQHDSNE LKYFMTEKQIEAA" CDS complement(join(18784771..18785049,18785410..18785508, 18785596..18786039,18786147..18786164)) /locus_tag="TCM_013953" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transcription regulators,zinc ion binding isoform 2" /protein_id="EOY21821.1" /db_xref="Phytozome:GSVIVT01008019001" /db_xref="TAIR:AT3G47610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2Y9" /translation="MSNHLQENRALNAAIDSRNNHKGNQGNSKKKKAGKVVSLAEAAK GSIVFQQGKPCLCQARRHRLISNCLSCGKIVCEQEGEGPCNFCGALVLREGSTYAGLE GSFTPLSDAEAAAEAYAKRLVEYDRNSAARTTVIDDQSDYYEIDSNSWLSKEEKELLK KKQEEIEEAERLKRSKVVVTFDLVGRKVLLNEDEVSELESENRILLRPPDEREMNRIK PNPNLRVQPVFLNPAPSKKPSKSKQPSKSPANGLCLEITGRVQHDSNELKYFMTEKQI EAA" CDS complement(join(18785539..18786279,18787002..18787157)) /locus_tag="TCM_013953" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transcription regulators,zinc ion binding isoform 3" /protein_id="EOY21822.1" /db_xref="Phytozome:Glyma17g10780.1" /db_xref="TAIR:AT3G47610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2Y9" /translation="METPGDWLEKALVELCNKIETGLGLDLDGEIISGLVSYCEMAQP LDAKEYLDNFIGQEAGKSVTEEYLRRRGHTDPCSGSSAIPTSKLQAYVKPPSGESSVS GTKKQFKTPKEATGSSHQAEPKKNAISGNQENRALNAAIDSRNNHKGNQGNSKKKKAG KVVSLAEAAKGSIVFQQGKPCLCQARRHRLISNCLSCGKIVCEQEGEGPCNFCGALVL REGSTYAGLEGSFTPLSDAEAAAEAYAKRLVEYDRNSAARTTVIDDQSDYYEIDSNSW LSKEVANLFSNTNSLKLRVIAV" mobile_element 18787458..18789569 /note="source:scaffold_1_CACTA_0009 1642 4547" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18789339..18791180) /note="source:scaffold_10_CACTA_0141 444 2284" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18789598..18793876 /note="source:CACAO_Mutator_E161_scaffold_1 1 4211" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18793569..18794217 /note="source:scaffold_1_CACTA_0009 9000 9622" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18794356..18794399) /note="source:scaffold_9_CACTA_0927 3749 3791" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18795100..18795956) /note="source:CACAO_Mutator_E1744_scaffold_8 963 1825" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18795895..18796009 /note="source:CACAO_MITE88_scaffold_5 607 734" /mobile_element_type="transposon:TIR/MITE" mobile_element 18795938..18800090 /note="source:CACAO_Mutator_E161_scaffold_1 5654 9813" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18796395..18800817 /note="source:scaffold_1_CACTA_0009 9411 13844" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18804910..18805008) /note="source:CACAO_on_E241_scaffold_112 1031 1140" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18804952..18804992) /note="source:MITE_hAT_4 1 131" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(18804993..18805063) /note="source:CACAO_hAT_E2547_scaffold_5 1 74" /mobile_element_type="transposon:TIR/hAT" gene complement(18805511..18806136) /locus_tag="TCM_013956" /note="dbxref CacaoGD:Thecc1EG013956" mRNA complement(18805511..18806136) /locus_tag="TCM_013956" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031432t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage" CDS complement(18805651..18805944) /locus_tag="TCM_013956" /note="paralog of Thecc1EG031432t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21823.1" /translation="MARDVDSIKANNCETKMTMLHCVIEVFASIFKTGIVYDNCCHEL IELGQLCHNALVKKTLQNPLFKNNDTSVILSKTAQIWNKCTLVGENVSLTPSP" gene 18809487..18813165 /locus_tag="TCM_013957" /note="dbxref CacaoGD:Thecc1EG013957" mRNA join(18809487..18809489,18809794..18813165) /locus_tag="TCM_013957" /product="Pentatricopeptide repeat (PPR) superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008016001" /inference="similar to AA sequence:Phytozome:GSVIVT01008016001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2049t2" CDS 18809889..18812168 /locus_tag="TCM_013957" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein" /protein_id="EOY21824.1" /db_xref="Phytozome:GSVIVT01008016001" /db_xref="TAIR:AT1G74580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CA58" /translation="MSPTLLPKHVAAVVKYQKDPLKALEIFNAVKKEVGFKHTLLTYK CMIEKLGCHGEFEAMENVLVEMRMNVDSSLLEGIYIGCMRNYGWKQKVQEAIDVFERM DFYNCEPTVLSYNAIMNILIEYGYFNEAHKVYMRMRDKGIVPDVYTFTIRIKSFCKTR RPHAALRLLRSMPLQGCEINAVAYCTIVGGFFEENLQVEAYELFDEMLRLGISPNITA FNKLIHILCKKGDVQESEKLLNKVMKRGVFPNLFTLNIFIQGLCRKGALAEAVSLLGS VTREGLIPDVVTYNTLICGLCKNGKVAEAERFLHKMVNEGLEPDGFTYNAVVDGCCKL GMIQYADKILTDAIFKGFVPDEFTYCSLINGLCQNGRTDRAVAVFNEALGKGLKPNII MYNVLIKGLSLQGLILQALQLMNEMSENGCSPNIWTYNIVINGLCKIGCVFDANNLLN DAIAKGYIPDIFTFNTLIDGYCKQLKMESAIEILNQMWNYGVTPDVITYNCVLNGLCK TSKSEDVIETFKAMTEKGCIPNVITYNILIESLCKARKCNEALNLLEEIDKKGLAPDI VSFGTLIHGFCSNGDLDGAYKLFRRMGQRYKVSFTAATYNIMINAYSEKLKINTAEKL FHEMGENGIAPDSYTYRVMIDVFCKTGKIDSGYDFLLEKVEKGFIPSLTTFGQVINCL CVEDRVHNAVGLIHLMVGKGIVPEVVNTIFESDKKIVAAPKIVVEDLLKKGHITYYSY ELLYDGVRDKKLLKKLQSR" gene 18813920..18819166 /locus_tag="TCM_013958" /note="dbxref CacaoGD:Thecc1EG013958" mRNA join(18813920..18817360,18818359..18818396, 18818801..18819166) /locus_tag="TCM_013958" /product="Pentatricopeptide repeat-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008015001" /inference="similar to AA sequence:Phytozome:GSVIVT01008015001" /note="transcript variant 1; alternatively spliced; quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3689t2" mRNA join(18813920..18817360,18818363..18819166) /locus_tag="TCM_013958" /product="Pentatricopeptide repeat-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008015001" /inference="similar to AA sequence:Phytozome:GSVIVT01008015001" /note="transcript variant 2; alternatively spliced; quality class is medium, express is medium, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:PASA:2:TSA:puevd3b013492t1a2; alternateUTRof:Thecc1EG013958t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3689t2" CDS 18814294..18816978 /locus_tag="TCM_013958" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative isoform 1" /protein_id="EOY21825.1" /db_xref="Phytozome:GSVIVT01008015001" /db_xref="TAIR:AT1G74600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R998" /translation="MRSVFNIKIHTQLYYSSYKFISSLAAIENPSIYRVENDDKNPTF FNTSNFFIDYKRLRQYTIKSTKLLHTHLLKTSKLQSNIFVANSLLDGYCRCGSMEEAI KLFDQMSEPNIISWNTMISGYNYNYLLEGSWVWFLKMRFSGFEPDEITYRSVLSACVA MRSTSFGKQLYSVTMKNGFFSNGYVRTGMIDLFAKCCVFEDALRVFYDVSCCENVVCW NAIISGAVRSEENWVALDLFVQMRKQFLMPNSFTFSSVLSACAALKELEIGKEVQGWI IKCGVVDVFVGTALTDLYVKCGDMEEAVNMFSWMPTRDVVSWTAIISGFVQKDDLLNA LEFFKEMRYMKVEINNYTATSVISACAKPDMIEEAKQIHSWIIKSGFYMDSVIQAALV NMYSKIGIIGLAEIVFKEMESIRSPNTWAVLISSFAQKQSFQRVIELLRTMLKEGLRP DRFCTSSVFSVIECINLGRQMHCYTLKTGLIFYLSVESSLFTMYSKCGSLEDSLKVFQ NIPVRDNVSCASMIAGFTEHGYAEQAVQLFRDMLSEETKPDQMTLTATLSACSSLHCL HKGKEIHGYAIRAGFGNETLICGAVITLYSKCSALGLARRVFDMLVQKDLVSYSSLIT GYAQTGLIEEAMLLFCAMMKSNLAVNSYTLSSILGASALSNKSGVGTQLHALVIKLGL DSEVSVGSSLVTMYSKCGSIRDSEKAFDEIDKPDLIGWTAMISSYAQHGKGVEALRAY ELMRKEEINPDPVTFVGILSACSHNGLIEEGYYYLNSMAKEYGIQPGYHHYACIVDIL GRLGKLREAEKFINNMPIEPNAFIWGTLLSACKVHGDVELGRLAAKKIIELEPCHSGA YVSLSNICADIGQWEGVLEIRSLMNGTGVRKEPGWSSV" CDS 18814294..18816978 /locus_tag="TCM_013958" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative isoform 1" /protein_id="EOY21826.1" /db_xref="Phytozome:GSVIVT01008015001" /db_xref="TAIR:AT1G74600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R998" /translation="MRSVFNIKIHTQLYYSSYKFISSLAAIENPSIYRVENDDKNPTF FNTSNFFIDYKRLRQYTIKSTKLLHTHLLKTSKLQSNIFVANSLLDGYCRCGSMEEAI KLFDQMSEPNIISWNTMISGYNYNYLLEGSWVWFLKMRFSGFEPDEITYRSVLSACVA MRSTSFGKQLYSVTMKNGFFSNGYVRTGMIDLFAKCCVFEDALRVFYDVSCCENVVCW NAIISGAVRSEENWVALDLFVQMRKQFLMPNSFTFSSVLSACAALKELEIGKEVQGWI IKCGVVDVFVGTALTDLYVKCGDMEEAVNMFSWMPTRDVVSWTAIISGFVQKDDLLNA LEFFKEMRYMKVEINNYTATSVISACAKPDMIEEAKQIHSWIIKSGFYMDSVIQAALV NMYSKIGIIGLAEIVFKEMESIRSPNTWAVLISSFAQKQSFQRVIELLRTMLKEGLRP DRFCTSSVFSVIECINLGRQMHCYTLKTGLIFYLSVESSLFTMYSKCGSLEDSLKVFQ NIPVRDNVSCASMIAGFTEHGYAEQAVQLFRDMLSEETKPDQMTLTATLSACSSLHCL HKGKEIHGYAIRAGFGNETLICGAVITLYSKCSALGLARRVFDMLVQKDLVSYSSLIT GYAQTGLIEEAMLLFCAMMKSNLAVNSYTLSSILGASALSNKSGVGTQLHALVIKLGL DSEVSVGSSLVTMYSKCGSIRDSEKAFDEIDKPDLIGWTAMISSYAQHGKGVEALRAY ELMRKEEINPDPVTFVGILSACSHNGLIEEGYYYLNSMAKEYGIQPGYHHYACIVDIL GRLGKLREAEKFINNMPIEPNAFIWGTLLSACKVHGDVELGRLAAKKIIELEPCHSGA YVSLSNICADIGQWEGVLEIRSLMNGTGVRKEPGWSSV" mobile_element complement(18817523..18817575) /note="source:CACAO_Mutator_E1376_scaffold_6 1862 1916" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18818659..18818699) /note="source:CACAO_M_E42343_F106_scaffold_5 6713 6753" /mobile_element_type="retrotransposon:LTR/Copia" gene 18820843..18822777 /locus_tag="TCM_013959" /note="dbxref CacaoGD:Thecc1EG013959" mRNA join(18820843..18820913,18821654..18822089, 18822289..18822777) /locus_tag="TCM_013959" /product="Glutathione S-transferase tau 9" /inference="alignment:exonerate-protein:2:frave:gene26001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013964t1" /inference="similar to AA sequence:ricco:30147.m014126" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3695t1" CDS join(18821769..18822089,18822289..18822660) /locus_tag="TCM_013959" /note="dbxref ricco:30147.m014126; paralog of Thecc1EG013964t1" /codon_start=1 /product="Glutathione S-transferase tau 9" /protein_id="EOY21827.1" /db_xref="TAIR:AT5G62480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MYS2" /translation="MGEENKVILHGVWASPFSKRVELALKLTGIPLEYVEEDLQNKSP QLLRCNPVHKKIPVRVHNGKPIAESLVILEYIDETWKNSPRLLPKDPYKRAKVRFWTS FVQQQLFDTMFTVTKTEGEAQRKAVKEVSEKLQVLEEGIKELFPNGNPCIDSQNIGLL DIVILSLLGPHKVQEEVLGIKIIDPEKTPLIFAWLTAINQLTVVKESTPPHDKLVALL KFLRENSLKSSA" mobile_element complement(18823068..18823686) /note="source:scaffold_2_CACTA_0260 3898 4514" /mobile_element_type="transposon:TIR/CACTA" gene complement(18827586..18829025) /locus_tag="TCM_013962" /note="dbxref CacaoGD:Thecc1EG013962" mRNA complement(join(18827586..18828600,18828685..18829025)) /locus_tag="TCM_013962" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(join(18828434..18828600,18828685..18828943)) /locus_tag="TCM_013962" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21828.1" /translation="MEERIRRRRTENINSIFAFANFIQDTAFVDFPMVRDCFTWHRRR AEATFSRLDRILIANEWLNCYSDIFQKCLSSSLSDHHLVVLGDNWKKAVAETSRGLAV WRGLRNLLLVIQDWHKNKFREMAQKIKTLEGELHKMDVE" gene complement(18830230..18833758) /locus_tag="TCM_013963" /note="dbxref CacaoGD:Thecc1EG013963" mRNA complement(join(18830230..18830680,18830900..18832340, 18833485..18833758)) /locus_tag="TCM_013963" /product="Eukaryotic release factor 1-3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01009682001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003170t3" /inference="similar to AA sequence:Phytozome:POPTR_0014s13720.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc965t3_C1; alternateUTRof:Thecc1EG013963t1; inference alignment:Newbler:10:TSA:cgbaL_g00546t00003" mRNA complement(join(18830239..18830677,18830900..18832384, 18833485..18833610)) /locus_tag="TCM_013963" /product="Eukaryotic release factor 1-3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01009682001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003170t3" /inference="similar to AA sequence:Phytozome:POPTR_0014s13720.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3769t2; alternateUTRof:Thecc1EG013963t1; inference alignment:Newbler:10:TSA:cgbaL_g00546t00003" mRNA complement(join(18830276..18830680,18830900..18832384, 18833485..18833517)) /locus_tag="TCM_013963" /product="Eukaryotic release factor 1-3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01009682001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003170t3" /inference="similar to AA sequence:Phytozome:POPTR_0014s13720.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00546t00003; inference alignment:Newbler:10:TSA:cgbaL_g00546t00003" CDS complement(18831025..18832338) /locus_tag="TCM_013963" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG003170t3" /codon_start=1 /product="Eukaryotic release factor 1-3 isoform 1" /protein_id="EOY21829.1" /db_xref="Phytozome:POPTR_0014s13720.1" /db_xref="TAIR:AT3G26618.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGS5" /translation="MADGHETDKNIEIWKIKKLIKALEAAKGNGTSMISLIMPPRDQV SRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYSKVPPNGLVLYTGTIVTE EGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTL SGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATS QPNVAGLILAGSADFKTELSQSDMFDQRLQAKILNVVDVSYGGENGFNQAIELSSEIL SNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVL KNSSTGEIVIKHLNKEQEANQNNFHDSASSADLEVQEKMPLLEWFANEYRRFGCNLEF VTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEVSDDGEVYDDSE" CDS complement(18831025..18832338) /locus_tag="TCM_013963" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG003170t3" /codon_start=1 /product="Eukaryotic release factor 1-3 isoform 1" /protein_id="EOY21830.1" /db_xref="Phytozome:POPTR_0014s13720.1" /db_xref="TAIR:AT3G26618.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGS5" /translation="MADGHETDKNIEIWKIKKLIKALEAAKGNGTSMISLIMPPRDQV SRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYSKVPPNGLVLYTGTIVTE EGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTL SGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATS QPNVAGLILAGSADFKTELSQSDMFDQRLQAKILNVVDVSYGGENGFNQAIELSSEIL SNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVL KNSSTGEIVIKHLNKEQEANQNNFHDSASSADLEVQEKMPLLEWFANEYRRFGCNLEF VTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEVSDDGEVYDDSE" CDS complement(18831025..18832338) /locus_tag="TCM_013963" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG003170t3" /codon_start=1 /product="Eukaryotic release factor 1-3 isoform 1" /protein_id="EOY21831.1" /db_xref="Phytozome:POPTR_0014s13720.1" /db_xref="TAIR:AT3G26618.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGS5" /translation="MADGHETDKNIEIWKIKKLIKALEAAKGNGTSMISLIMPPRDQV SRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYSKVPPNGLVLYTGTIVTE EGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTL SGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATS QPNVAGLILAGSADFKTELSQSDMFDQRLQAKILNVVDVSYGGENGFNQAIELSSEIL SNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVL KNSSTGEIVIKHLNKEQEANQNNFHDSASSADLEVQEKMPLLEWFANEYRRFGCNLEF VTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEVSDDGEVYDDSE" gene 18834513..18835699 /locus_tag="TCM_013964" /note="dbxref CacaoGD:Thecc1EG013964" mRNA join(18834513..18835049,18835135..18835699) /locus_tag="TCM_013964" /product="Glutathione S-transferase tau 9, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008013001.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013959t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008013001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3711t1" CDS join(18834729..18835049,18835135..18835515) /locus_tag="TCM_013964" /note="paralog of Thecc1EG013959t1" /codon_start=1 /product="Glutathione S-transferase tau 9, putative" /protein_id="EOY21832.1" /db_xref="Phytozome:GSVIVT01008013001" /db_xref="TAIR:AT5G62480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MYS2" /translation="MEEVNIVKLHGIGANPHSKRVELALRIKGIPYEFIEEDLSNKSQ LLLKSNPVYKKIPVLVHNEKPVVDSLIILEYIDETWKNAPQLLPDDPLERAKVRFRTS FIQQQLFEAMTRVVTCDGEIQAKAIDEVQGKMKVLEEGMKEVFPGSGSPSIDGDNLGL LDIMICSTFSPYKAYEEALGVKILDPERNPLVFCWVKALNELPLVKELYPPHDKLVAL LKVVRENALKVSSST" gene 18836501..18838398 /locus_tag="TCM_013965" /note="dbxref CacaoGD:Thecc1EG013965" mRNA join(18836501..18836576,18837269..18837375, 18837621..18838398) /locus_tag="TCM_013965" /product="Glutathione S-transferase tau 9, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008013001.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013959t1" /inference="similar to AA sequence:frave:gene26001" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3713t1" CDS join(18836552..18836576,18837269..18837375, 18837621..18837995) /locus_tag="TCM_013965" /note="dbxref frave:gene26001; paralog of Thecc1EG013959t1" /codon_start=1 /product="Glutathione S-transferase tau 9, putative" /protein_id="EOY21833.1" /db_xref="TAIR:AT5G62480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIB9" /translation="MGEEHYTGYLGNKTPQLLQYNPVCKKVPVLVHNGKPIAESLIIL LLQTLITVIKTDGEAQEKAIKELLEKLEVLGEGMKEFFPDGNPSIDSENVGLLDLVFF TSFGLHQVREEVLGIKIVDPEKTTLLFSWVTAINQLPLVKELTPPHDKLVAFLKFIRE NALKSSSA" mobile_element complement(18838824..18839203) /note="source:INTACT135F_F90_scaffold_2-int 13608 13998" /mobile_element_type="retrotransposon:LTR/Copia" gene 18839820..18841194 /locus_tag="TCM_013966" /note="dbxref CacaoGD:Thecc1EG013966" mRNA join(18839820..18839972,18840062..18840276, 18840609..18841194) /locus_tag="TCM_013966" /product="Glutathione S-transferase TAU 10, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014127.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013964t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008013001" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1477t1_C2" CDS join(18839858..18839972,18840062..18840276, 18840609..18840989) /locus_tag="TCM_013966" /note="paralog of Thecc1EG013964t1" /codon_start=1 /product="Glutathione S-transferase TAU 10, putative" /protein_id="EOY21834.1" /db_xref="Phytozome:GSVIVT01008013001" /db_xref="TAIR:AT1G74590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MYS2" /translation="MSHGIAITGDGEGNSYYLLLTYLTEFLFLRNYYSVMQFEEDLSN KSQVLLRHNPVHKKVPVLVHKGNPIAESCVILEYIDETWKVAPRLLPDDPYQRAQVRF WASFIQQQLFEAIGWIITSNAEAQEKNTVELLQQMDVFEETMKEFYAEGIQGIRNDNL GLLDILVCATFGPYKALEEAAGVKILDPERHPFIYSWVTNSNEVPVMKEATPPHEKLL ALLQIVRQNALKSSTSQS" gene complement(18841199..18843156) /locus_tag="TCM_013967" /note="dbxref CacaoGD:Thecc1EG013967" mRNA complement(join(18841199..18841638,18841813..18841922, 18842750..18842829,18842963..18843156)) /locus_tag="TCM_013967" /product="Ribosomal protein L34e superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g37360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018525t1" /inference="similar to AA sequence:Phytozome:Glyma18g49340.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1622t10" CDS complement(join(18841545..18841638,18841813..18841922, 18842750..18842829,18842963..18843041)) /locus_tag="TCM_013967" /note="paralog of Thecc1EG018525t1" /codon_start=1 /product="Ribosomal protein L34e superfamily protein" /protein_id="EOY21835.1" /db_xref="Phytozome:Glyma18g49340.1" /db_xref="TAIR:AT1G26880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42351" /translation="MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKC PVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKI VKKVLKIQKTKEKQASKS" mobile_element complement(18846830..18846880) /note="source:CACAO_M_E71671_F17_scaffold_10 10848 10888" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18848311..18851072 /locus_tag="TCM_013968" /note="dbxref CacaoGD:Thecc1EG013968" mRNA 18848311..18851072 /locus_tag="TCM_013968" /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400034639" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025073t1" /inference="similar to AA sequence:TAIR:AT1G74630.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc781t5" CDS 18848468..18850399 /locus_tag="TCM_013968" /note="paralog of Thecc1EG025073t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="EOY21836.1" /db_xref="TAIR:AT1G74630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CA54" /translation="MNNTSHHCLSLLTSCKNLKTLNQIHASLVKTGLNSDPFIAGKLI LHCAVTNSDVLDYARRFFLHFPNPDVFMHNTLIRGFSESSTPQNSIFTFIDMRRKSMV PPDSFSFAFVLKAASNYGSLRAGIQLHCQALIHGLDTHLFVGTTLISMYGECGSVCFA KKAFEQMLEPNVVAWNAIVTACFRCGDVKGARKMFDMMPFTNSTSSNVMLAGFAKAGE MELAKKMFWEMKVKDDVSWSTMIVGFAHNASFCEAFGYFRELRRVGLTPNEVSLTGVL SGCAQAGAFEFGKIFHGYIEKSGCNWITAVNNALVDMYARCGHVEMARLVFENMPYKK SVVSWTSMIEGLAMHGYAEEAIQVFHEMEGSGIRPDWITFITILYACSHAGLIEQGCS YFSKMKNVYDIEPKIEHYGCMVDLYGRAGYLQKANDFVCQMPVSPNAIIWRTLLGACS IHGNVELAEQVKERLSELEPNDSGDIVLLSNIYAVAGKWKDVATVRRSMTAQKIKKTP GWSMIEVDRTMYSFVAGEKSKKTTAEAYEKLKEIMLTLRVEGGYVPEVASVFHDVEEE EKEDSVFKHSEKLAVAFGISRLCKGRDIRIVKNLRICRDCHTVMKLISKVYGLKVVVR DRSRFHMFNDGSCSCKDYW" gene 18851188..18854455 /locus_tag="TCM_013969" /note="dbxref CacaoGD:Thecc1EG013969" mRNA join(18851188..18851737,18851917..18852220, 18853088..18853247,18853672..18854455) /locus_tag="TCM_013969" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g10810.1" /inference="similar to AA sequence:Phytozome:Glyma17g10810.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07329t00001" CDS join(18851552..18851737,18851917..18852220, 18853088..18853247,18853672..18854140) /locus_tag="TCM_013969" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY21837.1" /db_xref="Phytozome:Glyma17g10810.1" /db_xref="TAIR:AT1G74640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N236" /translation="MASFAISIFSSSSFALSCKNYRPFLSPTAFSAKPISIKASSASL DYSTPSSVIEQKPLKPTKTNCWEWKFKDNVINIYYEEHENESTDHAKNILMIPTISDV STVQEWRAVAKDILGRVGKVNWRATVVDWPGLGYSSRPKMDYDADVMEKFLVDFIKEI SSPENDFVIFGGGHAATIAIRAAKKGLVKPKAIAAVAPTWAGPLPIVFGRDPSMQTRY GLLRGTLRAPAVGWMMYNMLVSNEGAIQSQYKSHVYANPKNVTPAIVQSRYKLTTKKG SRFVPAAFLTGLLDPVTSREEFLELYAELEGEMPILVVSTEGSPKRSKAEMEALREAK GVSKFVEVPGALLPQEEYPRMVAEELYQFLQENFEVNA" mobile_element complement(18859475..18859844) /note="source:INTACT465_F78_scaffold_6-int 12820 13180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18860769..18863459) /note="source:CACAO_M_S_E65805_F7_scaffold_5 6881 9578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18863460..18867622) /note="source:CACAO_M_E43744_F324_scaffold_5 4046 8213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18867623..18870574 /note="source:CACAO_M_S_E32094_F72_scaffold_3 1 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18870575..18874621) /note="source:CACAO_M_E43744_F324_scaffold_5 1 4050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18878275..18881447 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 9000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18883503..18884241 /note="source:CACAO_M_E11098_F15_scaffold_2 14755 15493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18884389..18884403) /note="source:CACAO_M_E14312_F12_scaffold_3 1081 1096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18884404..18887249 /note="source:INTACT293_F14_scaffold_5-int 1 2944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18887250..18890111 /note="source:CACAO_M_E22574_F15_scaffold_3 1 4804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18890109..18890262) /note="source:CACAO_M_S_E119160_F14_scaffold_9 7206 7359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18890254..18892810) /note="source:CACAO_M_E58324_F9_scaffold_9 7656 10231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18892798..18895976) /note="source:INTACT288_F14_scaffold_2-int 3959 7156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18895976..18896103) /note="source:INTACT146F_F14_scaffold_2-int 5598 5726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18899328..18899390) /note="source:INTACT642F_F365_scaffold_5-int 963 1023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18902218..18903740 /note="source:CACAO_M_S_E144426_F33_scaffold_10 1 1462" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18904915..18904981) /note="source:INTACT146F_F14_scaffold_2-int 13456 13522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18905452..18905691 /note="source:INTACT298_F14_scaffold_10-int 6065 6307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18906577..18906645 /note="source:CACAO_M_E3884_F22_scaffold_1 13062 13130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18909518..18909626) /note="source:CACAO_M_E5899_F5_scaffold_2 19992 20103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18912162..18912729 /note="source:CACAO_M_E71405_F316_scaffold_10 1 552" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18912732..18914846) /note="source:CACAO_M_S_E4911_F76_scaffold_1 13624 15749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18914846..18917829 /note="source:INTACT118_F5_scaffold_9-int 9414 12393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18917830..18920585 /note="source:CACAO_M_E71405_F316_scaffold_10 2676 4801" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18922760..18933631 /note="source:INTACT97_F15_scaffold_3-int 1 16762" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18933694..18935503) /locus_tag="TCM_013978" /note="dbxref CacaoGD:Thecc1EG013978" mRNA complement(join(18933694..18934656,18934991..18935503)) /locus_tag="TCM_013978" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033546t1" /note="quality class is medium, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete" CDS complement(join(18934607..18934656,18934991..18935435)) /locus_tag="TCM_013978" /note="paralog of Thecc1EG033546t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21838.1" /translation="MVHNFLASTLQGRISHLRHVSVEDLWMMETIESQFYVNIVEYMI MRMRQVAMREETTLPYGNIISTLVKKKGIWSNRYLADWTSRRPRTLSFRWLVKRGYDL SLDEPLNSVESSSVHPAHDTPSRQPSRVPVSNDVMYNMLLRIDEKLRFRVFNLIFCYD GAWG" mobile_element 18935564..18938205 /note="source:CACAO_M_E22586_F369_scaffold_3 1 2642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18938211..18938768 /note="source:CACAO_Mutator_E592_scaffold_3 10483 11040" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18938782..18938829 /note="source:CACAO_Mutator_E1320_scaffold_6 68 113" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18938868..18939085 /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2244" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18938949..18939364) /note="source:CACAO_PIF_E119_scaffold_3 12551 12964" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 18939108..18939438 /note="source:scaffold_5_CACTA_0596 1439 1744" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18939523..18939562 /note="source:CACAO_Mutator_E1320_scaffold_6 81 121" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18939555..18939605 /note="source:CACAO_PIF_E119_scaffold_3 6778 6829" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(18939560..18946259) /note="source:CACAO_Mutator_E1744_scaffold_8 1 6676" /mobile_element_type="transposon:TIR/Mutator" gene 18948729..18950253 /locus_tag="TCM_013981" /note="dbxref CacaoGD:Thecc1EG013981" mRNA join(18948729..18949277,18949707..18950253) /locus_tag="TCM_013981" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 18949754..18950104 /locus_tag="TCM_013981" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21839.1" /translation="MIHVRGNIYEGDAELEDKVKKGSIIKRPRGKKGCNKNKLSNSKG GRVCGSSKRENEVIDVFVQYLDQYLTSNANLMEAEITWDVGSVVGLALKNCRDDFIQM VAIMEREERGGSDI" mobile_element 18950842..18953835 /note="source:CACAO_M_E22588_F143_scaffold_3 1 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18953884..18954007 /note="source:CACAO_PIF_E119_scaffold_3 1137 1266" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(18957538..18959837) /note="source:CACAO_M_S_E64832_F14_scaffold_5 1933 4310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18962352..18962421) /note="source:CACAO_PIF_E119_scaffold_3 2597 2669" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(18962422..18963103) /note="source:CACAO_M_E37281_F143_scaffold_5 576 1312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18967804..18968899) /note="source:INTACT740_F9_scaffold_10-int 3170 4260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18973234..18973687) /note="source:CACAO_on_S_E390_scaffold_9 2391 2850" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18976017..18985128 /note="source:INTACT392_F9_scaffold_3-int 1 9112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18988923..18989975 /note="source:CACAO_M_E57439_F82_scaffold_9 1 1104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18989043..18992181) /note="source:CACAO_M_E57010_F82_scaffold_8 1 3135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18993353..18993509) /note="source:INTACT477_F225_scaffold_9-int 4730 4867" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18993510..18993544 /note="source:INTACT392_F9_scaffold_3-int 4843 4877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18993545..18996992) /note="source:INTACT477_F225_scaffold_9-int 1684 4729" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18996993..18997775 /note="source:CACAO_M_E14732_F15_scaffold_3 1 783" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19000100..19001062 /note="source:CACAO_M_E53451_F15_scaffold_8 1303 2265" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19001163..19001498) /note="source:CACAO_M_E3109_F15_scaffold_1 7526 7861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19001494..19003058) /note="source:INTACT477_F225_scaffold_9-int 183 1735" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19003059..19003910) /note="source:CACAO_M_E44926_F33_scaffold_6 2103 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19003898..19003940 /note="source:CACAO_M_E49857_F85_scaffold_7 9112 9155" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19005123..19006607 /note="source:CACAO_M_E4554_F15_scaffold_2 9225 10707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19006608..19006794) /note="source:INTACT477_F225_scaffold_9-int 4485 4671" /mobile_element_type="retrotransposon:LTR/Copia" gene 19009642..19011541 /locus_tag="TCM_013983" /note="dbxref CacaoGD:Thecc1EG013983" mRNA join(19009642..19009948,19010244..19010373, 19010516..19011541) /locus_tag="TCM_013983" /product="Myb-related protein 306, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m004082" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018538t1" /inference="similar to AA sequence:ricco:30138.m004082" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8478t1" CDS join(19009816..19009948,19010244..19010373, 19010516..19011248) /locus_tag="TCM_013983" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m004082; paralog of Thecc1EG018538t1" /codon_start=1 /product="Myb-related protein 306, putative isoform 1" /protein_id="EOY21840.1" /db_xref="TAIR:AT5G62470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P81392" /translation="MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNT GLLRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQALLGNRWAAIASYLPQRTDN DIKNYWNTHLKKKLKKLQTGVDGQNQDGFSSSQSVSKGQWERRLQTDIRMAKQALSEA LSLDKTNSSTDSKDFNLSHPYLKPSQSQASTYASSAENISRLLENWMKNPPKPAAHQT NSAETMTQNSFNNTTTAGSSSSEGAFSATTPEGFDSFFSFNSSNSNASHESVSVDQNA NLTPENSVFQGESKPNLETHQVPLTLIEKWLLDDGSAQAHEDLINMSLEDSAGLF" mRNA join(<19010084..19010160,19010244..19010373, 19010516..19011494) /locus_tag="TCM_013983" /product="Myb domain protein 30, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30138.m004082" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018538t1" /inference="similar to AA sequence:ricco:30138.m004082" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc532t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc532t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8478t1" CDS join(<19010085..19010160,19010244..19010373, 19010516..19011248) /locus_tag="TCM_013983" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m004082; paralog of Thecc1EG018538t1" /codon_start=1 /product="Myb domain protein 30, putative isoform 2" /protein_id="EOY21841.1" /db_xref="TAIR:AT1G74650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P81392" /translation="CNKYSGIFFFLYINSSWFLPLLSFRGLLRCSKSCRLRWTNYLRP GIKRGNFTEQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQT GVDGQNQDGFSSSQSVSKGQWERRLQTDIRMAKQALSEALSLDKTNSSTDSKDFNLSH PYLKPSQSQASTYASSAENISRLLENWMKNPPKPAAHQTNSAETMTQNSFNNTTTAGS SSSEGAFSATTPEGFDSFFSFNSSNSNASHESVSVDQNANLTPENSVFQGESKPNLET HQVPLTLIEKWLLDDGSAQAHEDLINMSLEDSAGLF" mobile_element 19012139..19012231 /note="source:CACAO_PIF_E119_scaffold_3 2560 2657" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 19012173..19012254 /note="source:INTACT296_F13_scaffold_9-int 13162 13243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19021196..19022797 /note="source:INTACT700_F304_scaffold_7-int 5 1625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19022344..19022914) /note="source:INTACT444_F216_scaffold_4-int 1298 1850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19023813..19023962 /note="source:INTACT700_F304_scaffold_7-int 1721 1884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19034444..19034569 /note="source:INTACT1430F_F92_scaffold_9-int 7450 7573" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19035185..19035397) /note="source:CACAO_M_S_E4911_F76_scaffold_1 14260 14474" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19035378..19036577) /note="source:CACAO_M_S_E66657_F76_scaffold_5 4823 6040" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19036555..19037288) /note="source:CACAO_M_S_E66657_F76_scaffold_5 3981 4720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19037786..19040426 /note="source:CACAO_PIF_E119_scaffold_3 1 2641" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 19040527..19052149 /note="source:CACAO_PIF_E119_scaffold_3 2642 14264" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 19045866..19050416 /locus_tag="TCM_013984" /note="dbxref CacaoGD:Thecc1EG013984" mRNA join(19045866..19045967,19046040..19046138, 19047377..19047650,19047903..19048261,19048478..19048567, 19048651..19048736,19048932..19049107,19049174..19049501, 19049603..19049770,19049903..19050416) /locus_tag="TCM_013984" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031569t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS join(19045908..19045967,19046040..19046138, 19047377..19047650,19047903..19048261,19048478..19048567, 19048651..19048736,19048932..19049107,19049174..19049501, 19049603..19049770,19049903..19050263) /locus_tag="TCM_013984" /note="paralog of Thecc1EG031569t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21842.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BII0" /translation="MTSRDPRVEKGKKAAFKEEEEIQVLIDNLMQRTFDLEAAILSNE KIIAEIEFKVNDTYKGGETRVRGVGRDLSFSGLVKLVEEVVGVNSHNEIELHTLLSHA VGVSRTVIKDDEDVASILRDERAVVVFMTVKAGNANNILHEHANDTMMVVSDDDASDQ IEDDVEKDDTVDRNHELRYDCEDDYVGGHEDRLEDDRVEQTDIPDCNHADGGRGHTTT IVLEEVELDDHCRTVELEDVEGDPIYENAIALENDIRSLDDSDEERVGCKDKACKFAL RATKLLEGEYWQVRMLHKGARKLCNLIETKGNNGRDESQVGIAMPVCAVMWPVVAIDA THLKGRFKGILFVAICKDANEQIYPLAIGIGHVEDEESWSWFLNQLRFEKVYKDAHHD LCNYHLGKNVKNRFKREDVATIFTMVANCYRVIDFDRHMNQLKQLCKPAYDILIRLGP ERWALAPSPVRRYKLMTSNTTECINSCLRHTRKRPIMVLIERLNEASHFFVQAIDRVE FQVIGGSKDRVMNLSTKECSCGEFQFNLLLCTHAMAAIRLDLGLRDMRFPFTRLGIPV SGTSPMTCNKLSFCHQVGEVKREELGEKGFHQLGKATDDVYVHNARAMVIIDKIAGVC LHLYRQMGKHHLLSRRLEDVDPRHVQFADNPGTVEIAIQCGL" mobile_element complement(19052050..19054346) /note="source:CACAO_PIF_E62_scaffold_2 11754 14056" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 19054344..19054651 /note="source:CACAO_PIF_E119_scaffold_3 7816 8118" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(19054718..19054787) /note="source:CACAO_PIF_E62_scaffold_2 16575 16645" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 19054861..19054908 /note="source:CACAO_PIF_E62_scaffold_2 16575 16623" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(19055017..19055359) /note="source:CACAO_PIF_E62_scaffold_2 16126 16470" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(19055355..19055422) /note="source:CACAO_PIF_E62_scaffold_2 13875 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(19055460..19057077) /note="source:CACAO_PIF_E62_scaffold_2 10826 12420" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 19057078..19063641 /note="source:INTACT371F_F352_scaffold_3-int 1 6564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19063642..19066693) /note="source:CACAO_PIF_E62_scaffold_2 7751 10827" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(19063642..19063674) /note="source:CACAO_M_E58715_F13_scaffold_9 3537 3563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19066691..19068635 /note="source:INTACT9_F4_scaffold_5-int 6492 8509" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19067205..19068684) /note="source:CACAO_M_S_E90022_F9_scaffold_8 12660 14181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19069304..19069345) /note="source:CACAO_M_S_E145445_F22_scaffold_10 4817 4858" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19074956..19077793 /locus_tag="TCM_013988" /note="dbxref CacaoGD:Thecc1EG013988" mRNA join(19074956..19075090,19076178..19076622, 19076783..19077793) /locus_tag="TCM_013988" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is ortholog weak, intron is none, protein is utrpoor_complete" CDS join(19076320..19076622,19076783..19076860) /locus_tag="TCM_013988" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21843.1" /translation="MVHHGLFPFDIPRILGNHYLNEILSFLALVIISVCKRDRLIWTY DDKGNFFIKTSTSIIDKGPIGQKVWCHSLWKLPIPPKVQGFIWLAILDSILSKTFLAS QVSSNHGLMLHFLVLSTIVGSLFA" mobile_element 19077740..19082994 /note="source:INTACT501_F232_scaffold_3-int 1 5255" /mobile_element_type="retrotransposon:LTR/Copia" gene 19087509..19088040 /locus_tag="TCM_013990" /note="dbxref CacaoGD:Thecc1EG013990" mRNA join(19087509..19087521,19087603..19088040) /locus_tag="TCM_013990" /product="Mini zinc finger" /inference="alignment:exonerate- protein:2:ricco:30138.m004081" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018545t2" /inference="similar to AA sequence:ricco:30138.m004081" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6071t1" CDS 19087697..19087966 /locus_tag="TCM_013990" /note="dbxref ricco:30138.m004081; paralog of Thecc1EG018545t2" /codon_start=1 /product="Mini zinc finger" /protein_id="EOY21844.1" /db_xref="TAIR:AT1G18835.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H0F7" /translation="MKKRQVVLKSGRSSSTSSSVIRNVRYGECQKNHAANIGGYAVDG CREFMASGEEGTTGALTCAACGCHRNFHRREVETEVVCEYTPPNS" mobile_element 19092870..19096828 /note="source:scaffold_3_CACTA_0390 1 3959" /mobile_element_type="transposon:TIR/CACTA" gene 19095237..19096272 /locus_tag="TCM_013992" /note="dbxref CacaoGD:Thecc1EG013992" mRNA join(19095237..19095439,19095540..19095586, 19095682..19095789,19095883..19096060,19096155..19096272) /locus_tag="TCM_013992" /product="Origin recognition complex protein 6, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011759t1" /inference="similar to AA sequence:ricco:29813.m001474" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15300t00001" CDS join(19095323..19095439,19095540..19095586, 19095682..19095789,19095883..19096060,19096155..19096163) /locus_tag="TCM_013992" /note="dbxref ricco:29813.m001474; paralog of Thecc1EG011759t1" /codon_start=1 /product="Origin recognition complex protein 6, putative" /protein_id="EOY21845.1" /db_xref="TAIR:AT1G26840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVH3" /translation="MDLSDIARKLDLSEQKLLVRKEAELHHLCHVQFDSSIIGGEVCR AIICLEIAATRFGEVIFDRQKAIKLRGMSEKAYNRSFNSLQNGLNIKTTLDIREFGIQ FGCVRLIPFVKKVLSLQDPFPLYVFFDFGLFKSVSFQDCFVFERMPERMK" gene complement(19096766..19097510) /locus_tag="TCM_013993" /note="dbxref CacaoGD:Thecc1EG013993" mRNA complement(19096766..19097510) /locus_tag="TCM_013993" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(19096982..19097302) /locus_tag="TCM_013993" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21846.1" /translation="MEVFFIIKMQSLVWLHGCEGTKSIDEVGWCCRPWDASLKRAPLH TGVNILQQPPLSGEYKFNVDGSDRRKLRSTVCDGVHRDSKSYVLVSSLAHLVLRTSTT KRLW" mobile_element complement(19098630..19098853) /note="source:CACAO_M_S_E18668_F231_scaffold_3 2185 2410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19100314..19103031 /note="source:CACAO_M_E22599_F345_scaffold_3 1 2718" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19103158..19108700) /locus_tag="TCM_013994" /note="dbxref CacaoGD:Thecc1EG013994" mRNA complement(join(19103158..19104136,19105996..19106129, 19107467..19107530,19108489..19108700)) /locus_tag="TCM_013994" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS complement(join(19104113..19104136,19105996..19106129, 19107467..19107530,19108489..19108614)) /locus_tag="TCM_013994" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21847.1" /translation="MTPQLNQLEFMYKELGVLKKVQEIVQAWKKTSQVDQGKFIDEVM RDEQFEMMDKIEKKLEEIMGHSIEKCTAFKHKVQGLIKASFLNFEKNPEQGVNDYPLL NHARAGLKTWLMC" gene complement(19113134..19115685) /locus_tag="TCM_013995" /note="dbxref CacaoGD:Thecc1EG013995" mRNA complement(join(19113134..19113420,19114317..19114738, 19114952..19115050,19115495..19115685)) /locus_tag="TCM_013995" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(19114317..19114738,19114952..19115050, 19115495..19115633)) /locus_tag="TCM_013995" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21848.1" /translation="MLETKKPKKLQSLKLRKLIAESSREGRKLKRRKGKEKEKAKLVE ERGLIRGLYYEDGTDLRTILDDKSVIDMCDLLKEKGEDELALVREKLKEFKESRDMLM VAGLKELDREGPFVSKAIVGSPKGNESVAVGLSKVIGGPFEATGNVDGLVAIPSKVER HSDYIEYSDLRSSISTSSRSKVDMAQMVRLSGRFCTSDLQISDFFVGQSFKDSRHFKV V" mobile_element 19117083..19117698 /note="source:scaffold_2_CACTA_0260 3898 4514" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19119301..19124861 /note="source:INTACT399_F75_scaffold_3-int 1 5561" /mobile_element_type="retrotransposon:LTR/Copia" gene 19126929..19131698 /locus_tag="TCM_013996" /note="dbxref CacaoGD:Thecc1EG013996" mRNA join(19126929..19127101,19127378..19128786, 19130975..19131116,19131210..19131698) /locus_tag="TCM_013996" /product="Exostosin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400033940" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025798t1" /inference="similar to AA sequence:ricco:30138.m004079" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2092t2" CDS join(19127812..19128786,19130975..19131116, 19131210..19131481) /locus_tag="TCM_013996" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m004079; paralog of Thecc1EG025798t1" /codon_start=1 /product="Exostosin family protein isoform 1" /protein_id="EOY21849.1" /db_xref="TAIR:AT1G74680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5YLA7" /translation="MLEKGVFPSRFLFYIITISMFLLILSSVFLLQFGNTSLIPRSVF KLILLNGTSVYLPNLKSEQIKLPFLSSESSQVDAQIPLRNGQSSCQISSSGKKMCASW QQNLKSCDTSEALLRVYMYDLPSEFHFGLLGWKGKANQMWPDVNDPSIIPLYPGGLNL QHSMEYWLTLDLLSSNTPNVVRPCSAIRVKNSSQADIIFVPFFASLSYNRHSKLRGKE KVSVNKMLQNKLVQFLITQDEWKRFGGKDHLIVAHHPNSMLDARGELGSAMFVLADFG RYPTEIANLEKDIIAPYRHVVRSIPSTDSAPFDKRPILVYFQGAIYRKDGGAIRQELY YLLKDEKDVHFAFGTIQGNGVNQAGQGMTSSKFCLNIADVIDYTEFCIFVRASDAVKN GYVLKLLRGIKREQWTKKWEKLKEIVRHFQYQYPSLPCDAVDMIWEAVARKVSSVQFR IHRENRYRRSGR" mRNA join(<19127894..19128786,19130975..19131116, 19131210..19131567) /locus_tag="TCM_013996" /product="Exostosin family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400033940" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025798t1" /inference="similar to AA sequence:ricco:30138.m004079" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12056t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2092t2" CDS join(<19127896..19128786,19130975..19131116, 19131210..19131481) /locus_tag="TCM_013996" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m004079; paralog of Thecc1EG025798t1" /codon_start=1 /product="Exostosin family protein, putative isoform 2" /protein_id="EOY21850.1" /db_xref="TAIR:AT1G74680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5YLA7" /translation="FLLQFGNTSLIPRSVFKLILLNGTSVYLPNLKSEQIKLPFLSSE SSQVDAQIPLRNGQSSCQISSSGKKMCASWQQNLKSCDTSEALLRVYMYDLPSEFHFG LLGWKGKANQMWPDVNDPSIIPLYPGGLNLQHSMEYWLTLDLLSSNTPNVVRPCSAIR VKNSSQADIIFVPFFASLSYNRHSKLRGKEKVSVNKMLQNKLVQFLITQDEWKRFGGK DHLIVAHHPNSMLDARGELGSAMFVLADFGRYPTEIANLEKDIIAPYRHVVRSIPSTD SAPFDKRPILVYFQGAIYRKDGGAIRQELYYLLKDEKDVHFAFGTIQGNGVNQAGQGM TSSKFCLNIADVIDYTEFCIFVRASDAVKNGYVLKLLRGIKREQWTKKWEKLKEIVRH FQYQYPSLPCDAVDMIWEAVARKVSSVQFRIHRENRYRRSGR" gene complement(19132053..19140873) /locus_tag="TCM_013997" /note="dbxref CacaoGD:Thecc1EG013997" mRNA complement(join(19132053..19132282,19135564..19136203, 19136605..19136694,19136778..19136858,19137298..19137454, 19137532..19137574,19137711..19137789,19139397..19139468, 19139779..19140070,19140705..19140831)) /locus_tag="TCM_013997" /product="RING/FYVE/PHD zinc finger superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008001001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011709t1" /inference="similar to AA sequence:ricco:30138.m004077" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8482t2" gene 19133315..19134645 /locus_tag="TCM_013998" /note="dbxref CacaoGD:Thecc1EG013998" mRNA join(19133315..19133848,19134110..19134645) /locus_tag="TCM_013998" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" CDS join(19133702..19133848,19134110..19134310) /locus_tag="TCM_013998" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21855.1" /translation="MLFFPLISSLVLPNSSPPFKVSKTTPHLRASLPCLAFSCLPVAF LCFSRRGKRMGNKPTQIHGYWQGYAVLWSFQHVSGFVNSPREKKEEHACIVRWKDGDR SWSKPNTQQFNKI" mRNA complement(join(19135623..19136203,19136605..19136694, 19136778..19136858,19137298..19137454,19137722..19137789, 19139397..19139468,19139779..19140070,19140705..19140824)) /locus_tag="TCM_013997" /product="RING/FYVE/PHD zinc finger superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008001001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011709t1" /inference="similar to AA sequence:ricco:30138.m004077" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06627t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8482t2" mRNA complement(join(19135873..19136203,19136605..19136694, 19136778..19136858,19137298..19137454,19137722..19137789, 19139397..19139468,19139779..19140070,19140705..19140873)) /locus_tag="TCM_013997" /product="RING/FYVE/PHD zinc finger superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008001001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011709t1" /inference="similar to AA sequence:ricco:30138.m004077" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc211t7; alternateUTRof:Thecc1EG013997t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8482t2" mRNA complement(join(19135873..19136203,19136605..19136694, 19136769..19136858,19137298..19137454,19137722..19137789, 19139397..19139468,19139779..19140070,19140705..19140873)) /locus_tag="TCM_013997" /product="RING/FYVE/PHD zinc finger superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008001001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011709t1" /inference="similar to AA sequence:ricco:30138.m004077" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc346t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8482t2" CDS complement(join(19136081..19136203,19136605..19136694, 19136778..19136858,19137298..19137454,19137722..19137789, 19139397..19139468,19139779..19140048)) /locus_tag="TCM_013997" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30138.m004077; paralog of Thecc1EG011709t1" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein isoform 3" /protein_id="EOY21853.1" /db_xref="TAIR:AT3G47550.6" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HPR2" /translation="MGDHLVLCVDCLITPESLQSMQEAKAAGSSGESSSQVAQPHACA VDVEEVHEHGSSEEEPLIQTVECRICQEEDCIKNLETPCACSGSLKFAHRKCVQRWCN EKGDITCEICHQPYQPGYTAPPPPPQSEDATIDISEGWTIPGAPLDLRDPRILAMAAA ERHLLEADYDEYADNNASGAAFCRSAALILMALLLLRHALYLTNGDAENDASTFFSLF LLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATEVAFMIQAGQRRGVQFTIAPGP AATPHQEPLQ" CDS complement(join(19136081..19136203,19136605..19136694, 19136778..19136858,19137298..19137454,19137722..19137789, 19139397..19139468,19139779..19140048)) /locus_tag="TCM_013997" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30138.m004077; paralog of Thecc1EG011709t1" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein isoform 3" /protein_id="EOY21854.1" /db_xref="TAIR:AT3G47550.6" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HPR2" /translation="MGDHLVLCVDCLITPESLQSMQEAKAAGSSGESSSQVAQPHACA VDVEEVHEHGSSEEEPLIQTVECRICQEEDCIKNLETPCACSGSLKFAHRKCVQRWCN EKGDITCEICHQPYQPGYTAPPPPPQSEDATIDISEGWTIPGAPLDLRDPRILAMAAA ERHLLEADYDEYADNNASGAAFCRSAALILMALLLLRHALYLTNGDAENDASTFFSLF LLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATEVAFMIQAGQRRGVQFTIAPGP AATPHQEPLQ" CDS complement(join(19136081..19136203,19136605..19136694, 19136769..19136858,19137298..19137454,19137722..19137789, 19139397..19139468,19139779..19140048)) /locus_tag="TCM_013997" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m004077; paralog of Thecc1EG011709t1" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein isoform 2" /protein_id="EOY21852.1" /db_xref="TAIR:AT3G47550.6" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HPR2" /translation="MGDHLVLCVDCLITPESLQSMQEAKAAGSSGESSSQVAQPHACA VDVEEVHEHGSSEEEPLIQTVECRICQEEDCIKNLETPCACSGSLKFAHRKCVQRWCN EKGDITCEICHQPYQPGYTAPPPPPQSEDATIDISEGWTIPGAPLDLRDPRILAMAAA ERHLLEADYDEYADNNASGAAFCRSAALILMALLLLRHALYLTNGDAENDASTFFSVR MLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATEVAFMIQAGQRRGVQFTIA PGPAATPHQEPLQ" CDS complement(join(19136081..19136203,19136605..19136694, 19136778..19136858,19137298..19137454,19137532..19137574, 19137711..19137789,19139397..19139468,19139779..19140048)) /locus_tag="TCM_013997" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m004077; paralog of Thecc1EG011709t1" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein isoform 1" /protein_id="EOY21851.1" /db_xref="TAIR:AT3G47550.6" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HPR2" /translation="MGDHLVLCVDCLITPESLQSMQEAKAAGSSGESSSQVAQPHACA VDVEEVHEHGSSEEEPLIQTVECRICQEEDCIKNLETPCACSGSLKFAHRKCVQRWCN EKGDITCEICHQPYQPGYTAPPPPPQSEDATIDIRQVSTFSVCEDLSMSEAVCEGWTI PGAPLDLRDPRILAMAAAERHLLEADYDEYADNNASGAAFCRSAALILMALLLLRHAL YLTNGDAENDASTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATEVAF MIQAGQRRGVQFTIAPGPAATPHQEPLQ" mobile_element 19143205..19148316 /note="source:INTACT238_F180_scaffold_3-int 1 5112" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19148432..19148778) /note="source:INTACT172_F47_scaffold_2-int 1628 1976" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19148852..19152169) /note="source:CACAO_M_E14113_F106_scaffold_3 17099 20431" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19152170..19162079 /note="source:INTACT363_F7_scaffold_9-int 1 9921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19162082..19164968) /note="source:INTACT172_F47_scaffold_2-int 3366 6254" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19166556..19167744 /note="source:CACAO_M_E43916_F9_scaffold_5 9934 11141" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19168911..19171632 /locus_tag="TCM_014003" /note="dbxref CacaoGD:Thecc1EG014003" mRNA join(19168911..19169043,19169749..19170127, 19171116..19171632) /locus_tag="TCM_014003" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30138.m004072" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400055797" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05432t00001" CDS join(19169765..19170127,19171116..19171430) /locus_tag="TCM_014003" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21856.1" /db_xref="Phytozome:PGSC0003DMP400055797" /db_xref="TAIR:AT5G62440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZV4" /translation="MAEKEASLEPNEINLPAEDMDLETLASSAQNPEGGDDVDGVNNG NTNSKRGREEDCEENDDLSKKQKVEKSVEEERMEKESRSSESCPAHLGPKEFGSSMEM FDYFYNLLHYWPTQLNLNKYEHMVLLDLLKKGHLEPGKKIGSGIRAFQIRNHPMWKSK CFFVIRDDETIDDFSFRKCVDHILPLPEEMKIKLDANRALASGGWKGRGGKGGGRGRG RGGKSRN" gene complement(19172183..19172754) /locus_tag="TCM_014004" /note="dbxref CacaoGD:Thecc1EG014004" mRNA complement(join(19172183..19172484,19172640..19172754)) /locus_tag="TCM_014004" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS complement(join(19172277..19172484,19172640..19172683)) /locus_tag="TCM_014004" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21857.1" /translation="MCESLVKAEQLDSLSGKLGSGDVWCGRSYAREDSCSEVQFQGAD RRVDGYGYYFWSNQVDRHYWIVMCLANAASLRFLLHPAS" gene 19174062..19174552 /locus_tag="TCM_014005" /note="dbxref CacaoGD:Thecc1EG014005" mRNA 19174062..19174552 /locus_tag="TCM_014005" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" CDS 19174135..19174479 /locus_tag="TCM_014005" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21858.1" /translation="MWKSRTKWVGKRDRNIRYFHAMASSRMRVNRMDKIKGMDGMKET LEAIKGEVEKHFQKLYGEKEVLELIKLDYNFEKLKSDSASFLERSFKEEKVWGTIQGC NGNKAPRSDNIT" mobile_element 19175308..19175318 /note="source:CACAO_M_S_E5285_F300_scaffold_1 6627 6634" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19175319..19178625 /note="source:CACAO_M_E22606_F85_scaffold_3 1 3307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19178693..19179146) /note="source:INTACT126_F14_scaffold_3-int 717 1172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19179012..19179941 /note="source:CACAO_M_E56674_F14_scaffold_8 12186 13107" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19183328..19186796 /locus_tag="TCM_014006" /note="dbxref CacaoGD:Thecc1EG014006" mRNA join(19183328..19183472,19184737..19184855, 19185398..19185947,19186064..19186522) /locus_tag="TCM_014006" /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 2" /inference="alignment:exonerate- protein:2:ricco:30094.m000674" /inference="similar to AA sequence:ricco:30094.m000674" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3941t1; inference alignment:Newbler:10:TSA:cgbaP2_g06918t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc5985t1" mRNA join(19183346..19183472,19184737..19184855, 19185398..19185751,19185773..19185947,19186064..19186561, 19186651..19186796) /locus_tag="TCM_014006" /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 1" /inference="alignment:exonerate- protein:2:ricco:30094.m000674" /inference="similar to AA sequence:ricco:30094.m000674" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06918t00001; inference alignment:Newbler:10:TSA:cgbaP2_g06918t00001" CDS join(19184745..19184855,19185398..19185934) /locus_tag="TCM_014006" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30094.m000674" /codon_start=1 /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 2" /protein_id="EOY21860.1" /db_xref="TAIR:AT3G26420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HW88" /translation="MPEEVEYRCFIGNLSWSTSDRGLKDAFEKFGNLLEAKVVVDKFS GRSRGFGFVTFDDKTAMEEAIEAMNGMDLDGRNITVDRAQPHQGSGRDYDGDRNRDRV RDRDRNRSYDGGRGSNGGECFKCGKPGHFARECPSEGARGGKYGGRGDRYGGGGGGGG GGGGGGSRYGPDRNGDRFGGRSRDAGGRGGPGGDRHNRDRSGPYERRGTGGQRSG" CDS join(19184745..19184855,19185398..19185751, 19185773..19185934) /locus_tag="TCM_014006" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30094.m000674" /codon_start=1 /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 1" /protein_id="EOY21859.1" /db_xref="TAIR:AT3G26420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HW88" /translation="MPEEVEYRCFIGNLSWSTSDRGLKDAFEKFGNLLEAKVVVDKFS GRSRGFGFVTFDDKTAMEEAIEAMNGMDLDGRNITVDRAQPHQGSGRDYDGDRNRDRV RDRDRNRSYDGGRGSNGGECFKCGKPGHFARECPSEGARGGKYGGRGDRYGGGGGGGS RYGPDRNGDRFGGRSRDAGGRGGPGGDRHNRDRSGPYERRGTGGQRSG" mobile_element 19187507..19187572 /note="source:INTACT415F_F22_scaffold_4-int 2175 2243" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19188152..19189557) /locus_tag="TCM_014007" /note="dbxref CacaoGD:Thecc1EG014007" mRNA complement(19188152..19189557) /locus_tag="TCM_014007" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.50 coverage" CDS complement(19189068..19189505) /locus_tag="TCM_014007" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21861.1" /translation="MAATPNQRPSPNDLQNLFRKVNDSKKNHSQEPLDEEFANTERRQ WRVQVSMGLEANDGRRPFSISSLFKSCETKIRGDLKAMMGICIAGLVTDEGYSMATKF IYSDMDAEMKRGGGVQDEDKTEKKHLQNELGSNLEFWFFYACI" gene 19189863..19191232 /locus_tag="TCM_014008" /note="dbxref CacaoGD:Thecc1EG014008" mRNA join(19189863..19190460,19190654..19190711, 19190813..19191232) /locus_tag="TCM_014008" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS join(19190071..19190460,19190654..19190711, 19190813..19190874) /locus_tag="TCM_014008" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21862.1" /translation="MDKRGWWDEPWKICVQDQQINERLGVTWSPPGILKLKLNVDGPT YCKSGSAGCAGVLSDYNGHVRGVFYGPLGVKSSNYAKLMAIFYALKFFASTPWAGSHK LVVELDSQGALSYSWVEKTTPRPWAMWQLCSSWNEIAWSGMQADVLAGVISGILQSGF VWAIHLLST" mobile_element complement(19191154..19191201) /note="source:INTACT415F_F22_scaffold_4-int 2196 2243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19191173..19191222 /note="source:INTACT255_F60_scaffold_8-int 6278 6327" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19196244..19197919 /locus_tag="TCM_014009" /note="dbxref CacaoGD:Thecc1EG014009" mRNA join(19196244..19196450,19196546..19196694, 19196782..19197128,19197213..19197919) /locus_tag="TCM_014009" /product="RWP-RK domain-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:30138.m004071" /inference="similar to AA sequence:ricco:30138.m004071" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3785t1" CDS join(19196350..19196450,19196546..19196694, 19196782..19197128,19197213..19197533) /locus_tag="TCM_014009" /note="dbxref ricco:30138.m004071" /codon_start=1 /product="RWP-RK domain-containing protein, putative" /protein_id="EOY21863.1" /db_xref="TAIR:AT1G18790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLY3" /translation="MGSHYSFNGWSKSELVAKEEETSPFATQLPPDSSASVYYNSVDW QNEFPIQESFFDALPLMSSFYTDPLYDSLDFEKSSSLIQDHLTIVAENNLLGCEKGNG FWNELGALFKPNGKNEDFGEELKEERRAKRCREEKCSSSTMLSRKVISQYFYLPITQA AKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIWNVQELQKEEGEESERKLREAVE VLERERKLLEEMPDLQLEDKTKRLRQACFKANYKKRKLMMMESQSSSGGSRESLDLTR GYDMENEEDEEEMKLLLSDSFSSTNIMAN" mobile_element 19198656..19199244 /note="source:INTACT686_F300_scaffold_3-int 7077 7665" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19199241..19199869 /note="source:CACAO_M_E84368_F4_scaffold_10 5568 6196" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19199870..19200257 /note="source:CACAO_Again_on_E27_scaffold_1 1 627" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(19200258..19200939) /note="source:scaffold_6_CACTA_0713 7569 8284" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19200940..19201178 /note="source:CACAO_Again_on_E27_scaffold_1 628 1016" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(19201142..19201266) /note="source:scaffold_6_CACTA_0713 722 835" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19201178..19201290 /note="source:CACAO_Again_on_E27_scaffold_1 4198 4309" /mobile_element_type="transposon:TIR/hAT" mobile_element 19201296..19203680 /note="source:CACAO_M_E84368_F4_scaffold_10 6191 8590" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19203677..19204036) /note="source:CACAO_M_E42514_F40_scaffold_5 15422 15781" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19214248..19214661) /note="source:CACAO_M_E42514_F40_scaffold_5 14548 14961" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19214646..19215099 /note="source:CACAO_M_E84368_F4_scaffold_10 8569 9022" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19215094..19219016 /note="source:CACAO_M_E84368_F4_scaffold_10 9273 13206" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19222210..19222974) /note="source:CACAO_M_E84368_F4_scaffold_10 5372 6138" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19222964..19223175) /note="source:CACAO_M_E84368_F4_scaffold_10 12188 12398" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19228753..19232150 /note="source:CACAO_Mutator_E592_scaffold_3 4032 7316" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19232151..19233569 /note="source:INTACT19F_F94_scaffold_1-int 10699 12895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19233559..19234663 /note="source:CACAO_M_E12297_F14_scaffold_3 6346 7443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19235445..19236827) /note="source:INTACT670_F33_scaffold_3-int 7732 9111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19237275..19238737) /note="source:INTACT670_F33_scaffold_3-int 5820 7282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19238838..19239096 /note="source:CACAO_M_E12297_F14_scaffold_3 11445 11703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19241463..19242104) /note="source:INTACT670_F33_scaffold_3-int 2428 3070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19242419..19244795) /note="source:CACAO_M_E22186_F143_scaffold_3 3596 6107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19245153..19246787 /note="source:CACAO_Mutator_E592_scaffold_3 7711 9341" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19247893..19248253 /note="source:INTACT296_F13_scaffold_9-int 1 366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19248149..19248265) /note="source:INTACT19F_F94_scaffold_1-int 1252 1373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19248256..19250585) /note="source:INTACT292_F22_scaffold_5-int 2365 4700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19250584..19250687) /note="source:CACAO_M_E58715_F13_scaffold_9 5960 6062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19253095..19255563) /note="source:INTACT292_F22_scaffold_5-int 3 2445" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19256663..19258557) /locus_tag="TCM_014013" /note="dbxref CacaoGD:Thecc1EG014013" mRNA complement(join(19256663..19257704,19258389..19258557)) /locus_tag="TCM_014013" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(19257593..19257704,19258389..19258486)) /locus_tag="TCM_014013" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21864.1" /translation="MSVNRDVAAIVMGLREVPGRDIFYLDICFSMYSQMLSFLSKAKT LTPKAFNLFSLKQSVIETPHRSHRP" mobile_element complement(19258379..19258422) /note="source:CACAO_Again_on_E14_scaffold_1 9898 9947" /mobile_element_type="transposon:TIR/hAT" mobile_element 19258423..19261526 /note="source:CACAO_M_E22622_F15_scaffold_3 1 3104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19263035..19263416 /note="source:CACAO_Mutator_E592_scaffold_3 13228 13608" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19264898..19268492 /note="source:CACAO_Mutator_E1018_scaffold_5 1023 4684" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19268493..19271230 /note="source:CACAO_M_E22627_F73_scaffold_3 1 2738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19272504..19275469 /note="source:CACAO_M_E22628_F143_scaffold_3 1 2966" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19276364..19276798) /locus_tag="TCM_014015" /note="dbxref CacaoGD:Thecc1EG014015" mRNA complement(join(19276364..19276500,19276647..19276798)) /locus_tag="TCM_014015" /product="Cyclophilin71" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041474t3" /inference="similar to AA sequence:ricco:29791.m000542" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3793t1" CDS complement(join(19276390..19276500,19276647..19276790)) /locus_tag="TCM_014015" /note="dbxref ricco:29791.m000542; paralog of Thecc1EG041474t3" /codon_start=1 /product="Cyclophilin71" /protein_id="EOY21865.1" /db_xref="TAIR:AT3G44600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8B9H0" /translation="MYRLEAIDFGRRMAVEKEMEKIETAPQPNAVFDESSNFLIYATL LEIKMVNLHTNKVARILGKVESNDRFLRIALYQEIEAARK" mobile_element complement(19278091..19280780) /note="source:CACAO_M_E12297_F14_scaffold_3 8826 11517" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19278794..19279318) /locus_tag="TCM_014016" /note="dbxref CacaoGD:Thecc1EG014016" mRNA complement(join(19278794..19278880,19278964..19279318)) /locus_tag="TCM_014016" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012633t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage" CDS complement(join(19278874..19278880,19278964..19279202)) /locus_tag="TCM_014016" /note="paralog of Thecc1EG012633t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21866.1" /translation="MTGSGKSLGGFDRCRNCGNYHSGLCRGPTRCFQCGQTGHIRSNC PQLGRATVAASSPLARTDIQRRDSSGLPPRQGVAIRR" mobile_element complement(19282752..19283372) /note="source:CACAO_Again_on_E205_scaffold_9 1375 1987" /mobile_element_type="transposon:TIR/hAT" mobile_element 19283307..19283384 /note="source:CACAO_M_E48701_F73_scaffold_6 1791 1859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19283537..19284130) /note="source:scaffold_8_CACTA_0857 280 861" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19284066..19284469 /note="source:scaffold_4_CACTA_0500 11252 11650" /mobile_element_type="transposon:TIR/CACTA" gene 19285330..19288392 /locus_tag="TCM_014017" /note="dbxref CacaoGD:Thecc1EG014017" mRNA 19285330..19288392 /locus_tag="TCM_014017" /product="Pentatricopeptide repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006066t3" /inference="similar to AA sequence:Phytozome:POPTR_0003s07210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3795t1" mRNA join(19285436..19287356,19288036..19288063) /locus_tag="TCM_014017" /product="Pentatricopeptide repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006066t3" /inference="similar to AA sequence:Phytozome:POPTR_0003s07210.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc822t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3795t1" CDS join(19285506..19287356,19288036..19288062) /locus_tag="TCM_014017" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG006066t3" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein isoform 2" /protein_id="EOY21868.1" /db_xref="Phytozome:POPTR_0003s07210.1" /db_xref="TAIR:AT3G47530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SN85" /translation="MTQAPAAVINKNLSSLKNSISCFTTRTRTSTTSKPIHKLFTHKT FQETRPNNNQQPTSKNPHPRTQQQNLISLIKSGTQNSLLQIHAHLIRTSLLQNPTFSL HFLSCLCFSPFRDLRYSRHFFSQIDKPSASHYSTLIRAYSSSNSPKDAFFLYKEMTQK GLKPDPVSSSFVLKSCMKFSSLVCGLQIHGRILGDGFQSDSLLLTTLMDFYSSFASRD EACKVFDEISKKDTVAWNVLISCYLRNGRTRDVLILFDSMKNEGACKPDDVTCLLVVQ ACANLGALDFGEKVHGYIEECGYGVSLNLRNSLIAMYSRCGCLEKAYGVFKGMPEKNV ISWSAMISGLAMNGYGRDAILAFEEMQRMGIVPDEQTFTGVLSACSHCGLVDEGMEFL HQMSKEFGIEPNIHHYGCMVDLLGRAGLLDQAYQVIISMGVKPDATIWRTLLGACRIH GHVTLGERVIEHLIELKAQEAGDYVLLLNIYSSDGKWEKVTELRKFMKEKGIQTTPGC STIELKGVVHNFIVDDISHPRKHEIYDKLDEINKQLKIAGYVAEITSELHDLGAEEKA HALSYHSEKLALAFGVLATPPGTTIRVTKNLRICVDCHNFAKFLSGVYNRKCSFEFRV E" CDS 19285506..19287428 /locus_tag="TCM_014017" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG006066t3" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein isoform 1" /protein_id="EOY21867.1" /db_xref="Phytozome:POPTR_0003s07210.1" /db_xref="TAIR:AT3G47530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SN85" /translation="MTQAPAAVINKNLSSLKNSISCFTTRTRTSTTSKPIHKLFTHKT FQETRPNNNQQPTSKNPHPRTQQQNLISLIKSGTQNSLLQIHAHLIRTSLLQNPTFSL HFLSCLCFSPFRDLRYSRHFFSQIDKPSASHYSTLIRAYSSSNSPKDAFFLYKEMTQK GLKPDPVSSSFVLKSCMKFSSLVCGLQIHGRILGDGFQSDSLLLTTLMDFYSSFASRD EACKVFDEISKKDTVAWNVLISCYLRNGRTRDVLILFDSMKNEGACKPDDVTCLLVVQ ACANLGALDFGEKVHGYIEECGYGVSLNLRNSLIAMYSRCGCLEKAYGVFKGMPEKNV ISWSAMISGLAMNGYGRDAILAFEEMQRMGIVPDEQTFTGVLSACSHCGLVDEGMEFL HQMSKEFGIEPNIHHYGCMVDLLGRAGLLDQAYQVIISMGVKPDATIWRTLLGACRIH GHVTLGERVIEHLIELKAQEAGDYVLLLNIYSSDGKWEKVTELRKFMKEKGIQTTPGC STIELKGVVHNFIVDDISHPRKHEIYDKLDEINKQLKIAGYVAEITSELHDLGAEEKA HALSYHSEKLALAFGVLATPPGTTIRVTKNLRICVDCHNFAKFLSGVYNRKVIIRDRT RFHHFRDGGCSCNDYW" gene complement(19288472..19292009) /locus_tag="TCM_014018" /note="dbxref CacaoGD:Thecc1EG014018" mRNA complement(join(19288472..19290334,19291465..19291473, 19291596..19291683,19291943..19292009)) /locus_tag="TCM_014018" /product="Malate dehydrogenase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s13630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031715t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s13630.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8496t1" CDS complement(join(19289088..19290334,19291465..19291473, 19291596..19291683,19291943..19291954)) /locus_tag="TCM_014018" /note="paralog of Thecc1EG031715t1" /codon_start=1 /product="Malate dehydrogenase" /protein_id="EOY21869.1" /db_xref="Phytozome:POPTR_0017s13630.1" /db_xref="TAIR:AT3G47520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H5T9" /translation="MMVNILSRERRCIRYTKEKGKILGRENSAAKRVDLKECEMAATS ATSFSIGSTVSLGSRGCSLPQKKPFSVRFTSQNSLTSFSGLKAATSVNCESESSFLGK ESSAALRASVAPKAQKPNQRSQYVLQPQASYKVAILGAAGGIGQPLALLIKMSPLVST LNLYDIANVKGVAADLSHCNTPSQVLDFTGASELGNCLKGVNVVVIPAGVPRKPGMTR DDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG VTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKAKPSVSFTDEEVEQL TVRIQNAGTEVVEAKAGAGSATLSMGYAAARFVESSLRALDGDGDVYECSFVQSNLTD LPFFASRIKLGRKGIEAWIPSDLEGLTEYEQKALEALKPELKASIEKGIAFVQKQPVT A" gene complement(19291465..19295439) /locus_tag="TCM_014019" /note="dbxref CacaoGD:Thecc1EG014019" mRNA complement(join(19291465..19292019,19292326..19293473, 19294278..19295079)) /locus_tag="TCM_014019" /product="Pyridine nucleotide-disulfide oxidoreductase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041132t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07060.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc191t10; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8490t1" mRNA complement(join(19292105..19293476,19294278..19295439)) /locus_tag="TCM_014019" /product="Pyridine nucleotide-disulfide oxidoreductase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041132t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s07060.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8490t1" mRNA complement(join(19292732..19293473,19294278..19294859)) /locus_tag="TCM_014019" /product="Pyridine nucleotide-disulfide oxidoreductase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041132t1" /inference="similar to AA sequence:Phytozome:Glyma17g10890.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc181t36; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8490t1" CDS complement(join(19292775..19293473,19294278..19294967)) /locus_tag="TCM_014019" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041132t1" /codon_start=1 /product="Pyridine nucleotide-disulfide oxidoreductase family protein isoform 2" /protein_id="EOY21871.1" /db_xref="Phytozome:POPTR_0012s07060.1" /db_xref="TAIR:AT1G74470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CA67" /translation="MSSIAFKPFTGLRRSSAVPTTTITTNSTGLSKAVKFHASAAKTS PKLSNRNLRVAVIGGGPAGGSAAETLAKGGIETFLIERKLDNCKPCGGAIPLCMVGEF DLPLDIIDRRVTKMKMISPSNIAVDIGQTLKPHEYIGMVRREVLDAYLRDRAKENGAN VINGLFLKMDMPQRWDEPYVLHYTEYDGKKGAMGEKVSLEVDAVIGADGANSRVAKAI NAGDYDYAIAFQRIKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTV THKSDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVT KCSGEGIYFAAKSGRMCAEAIVEGSQHGKKMVDEGDLRKYLEKWDKTYWPTYKVLDVL QKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKTVAPGNPLEDLKLAVNTIGSLVRA NALRKEMEKLNV" CDS complement(join(19292775..19293476,19294278..19294967)) /locus_tag="TCM_014019" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041132t1" /codon_start=1 /product="Pyridine nucleotide-disulfide oxidoreductase family protein isoform 1" /protein_id="EOY21870.1" /db_xref="Phytozome:POPTR_0012s07060.1" /db_xref="TAIR:AT1G74470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CA67" /translation="MSSIAFKPFTGLRRSSAVPTTTITTNSTGLSKAVKFHASAAKTS PKLSNRNLRVAVIGGGPAGGSAAETLAKGGIETFLIERKLDNCKPCGGAIPLCMVGEF DLPLDIIDRRVTKMKMISPSNIAVDIGQTLKPHEYIGMVRREVLDAYLRDRAKENGAN VINGLFLKMDMPQRWDEPYVLHYTEYDGKKGAMGEKVSLEVDAVIGADGANSRVAKAI NAGDYDYAIAFQERIKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGT VTHKSDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYV TKCSGEGIYFAAKSGRMCAEAIVEGSQHGKKMVDEGDLRKYLEKWDKTYWPTYKVLDV LQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKTVAPGNPLEDLKLAVNTIGSLVR ANALRKEMEKLNV" CDS complement(join(19292775..19293473,19294278..19294676)) /locus_tag="TCM_014019" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041132t1" /codon_start=1 /product="Pyridine nucleotide-disulfide oxidoreductase family protein isoform 3" /protein_id="EOY21872.1" /db_xref="Phytozome:Glyma17g10890.1" /db_xref="TAIR:AT1G74470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CA67" /translation="MVGEFDLPLDIIDRRVTKMKMISPSNIAVDIGQTLKPHEYIGMV RREVLDAYLRDRAKENGANVINGLFLKMDMPQRWDEPYVLHYTEYDGKKGAMGEKVSL EVDAVIGADGANSRVAKAINAGDYDYAIAFQRIKIPDEKMVYYENLAEMYVGDDVSPD FYGWVFPKCDHVAVGTGTVTHKSDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPR PRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSQHGKKMVDEGDLRK YLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKTVAPG NPLEDLKLAVNTIGSLVRANALRKEMEKLNV" gene 19295480..19317844 /locus_tag="TCM_014020" /note="dbxref CacaoGD:Thecc1EG014020" mRNA join(19295480..19295770,19313819..19313874, 19315123..19315902,19317808..19317844) /locus_tag="TCM_014020" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage" mobile_element 19296888..19297168 /note="source:scaffold_7_CACTA_0789 1861 2134" /mobile_element_type="transposon:TIR/CACTA" gene 19297661..19313982 /locus_tag="TCM_014021" /note="dbxref CacaoGD:Thecc1EG014021" mRNA join(19297661..19297725,19303883..19303911, 19304012..19304189,19309113..19309656,19309810..19310125, 19310186..19310768,19313819..19313982) /locus_tag="TCM_014021" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage" mobile_element 19300056..19300484 /note="source:CACAO_M_E4554_F15_scaffold_2 10279 10707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19304185..19304241 /note="source:INTACT1604F_F75_scaffold_10-int 2087 2143" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19304238..19307739 /note="source:INTACT1604F_F75_scaffold_10-int 2061 5572" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19308257..19308424 /note="source:CACAO_Again_on_E205_scaffold_9 210 378" /mobile_element_type="transposon:TIR/hAT" mobile_element 19308418..19308561 /note="source:CACAO_Again_on_E205_scaffold_9 8329 8475" /mobile_element_type="transposon:TIR/hAT" CDS 19309143..19309637 /locus_tag="TCM_014021" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21874.1" /translation="MLKWVSCFACVAMPSLRLSISSYHPASYVLGYKKFLYVFLRSWF CLHLSLHSFSLFISLIRVFSSGNDFRICDCLLFFFFTFLFLCCVLSCFILLFELLILL FGLLNFCSLWDEIFILFYIVLRIAMNLFDLSCCSSCYYESILNFPFAIPCWEKMRYFV LNFT" CDS join(19313864..19313874,19315123..19315354) /locus_tag="TCM_014020" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21873.1" /translation="MAFRSAKVGYYASRYKKFGNLCYVIGALRAFIGHHNLDLRIMVN IFRDLKSNNSTSESLVFSDSLGYAIAHTISFHMIAL" mobile_element 19316386..19317013 /note="source:CACAO_Again_on_E205_scaffold_9 8329 8861" /mobile_element_type="transposon:TIR/hAT" mobile_element 19317007..19317059 /note="source:CACAO_Again_on_E205_scaffold_9 8624 8676" /mobile_element_type="transposon:TIR/hAT" mobile_element 19317827..19318017 /note="source:CACAO_Again_on_E205_scaffold_9 8868 9058" /mobile_element_type="transposon:TIR/hAT" gene 19318021..19323129 /locus_tag="TCM_014026" /note="dbxref CacaoGD:Thecc1EG014026" mRNA join(19318021..19318183,19318329..19318506, 19318590..19318973,19319531..19319805,19320164..19320338, 19321065..19321134,19321850..19321881,19322483..19323129) /locus_tag="TCM_014026" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS join(19318142..19318183,19318329..19318506, 19318590..19318973,19319531..19319805,19320164..19320338, 19321065..19321134,19321850..19321881,19322483..19322865) /locus_tag="TCM_014026" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21875.1" /translation="MNRAGSINHGKRIVERNTADQLRDTVQSTKDNAGQANGGIESRA MIQEDNGLFGRASEGEEVVRESLTMDVLTGSILDPNKHTVATMEVKKVEEGLHTFKLM TRNARTGGVAIHEKDFKSTDKKILTHLQGMSIKKRVRAKPIIATMHSNAMSSLLEDSG QNLAFEDIEVEAIQQSVATKDLKKPSTILGDDLKENLWPIQGPKFTWRRGTMFERIDK AVCNMQWRLAFSDAVVHHLPRVGSDHRPLLISTRDARVENRTQSFRFQAVWLIHEGFN EFVKQAWDNSSNIHVAMWISFKVYIHSKEGNVLPPYPIRNKFSILPLKAHEFIRRPVD MEEVRETLFEMKPLKAPEASEDQMEVIKEVWTTSVPVQEQRYKIHVKFKSTGRELHIE GQLSIIKSMVVNTHSTWTFVPLINGGMKRQEEILVGWTPPPKEWITVNSDGAYNSVAR IASAGRVLRDTHGTWIVGYACKLSQVQPIVQSCEGFTKASSWLGSEASAKLNYKLITR QWFR" gene 19325047..19328052 /locus_tag="TCM_014027" /note="dbxref CacaoGD:Thecc1EG014027" mRNA join(19325047..19325264,19325394..19325716, 19325896..19326026,19326122..19326358,19326444..19326693, 19326955..19328052) /locus_tag="TCM_014027" /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30138.m004067" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019122t1" /inference="similar to AA sequence:ricco:30138.m004067" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1616t1" CDS join(19325182..19325264,19325394..19325716, 19325896..19326026,19326122..19326358,19326444..19326693, 19326955..19327202) /locus_tag="TCM_014027" /note="dbxref ricco:30138.m004067; paralog of Thecc1EG019122t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /protein_id="EOY21876.1" /db_xref="TAIR:AT1G74460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CA68" /translation="MSPILDCSWSKHLFGYTVVTRKRVVIVREIHVGLKPQLHHFSEH NFLKVLEDTGANMKFNVALTLLLVSLVGLAIQGCHCKVVQFIFGDSLSDVGNNKNLPR SLAQASLPYYGIDFGNGLPNGRFTNGRTVADIIGDNTGLPRPPAFLDPSLTEDVILEN GVNYASGGGGILNETGGFFIQRFSLWRQIELFQGTTELIKSKLGKQAAKFFQDARFVV ALGSNDFINNYLMPVYTDSWTYNDETFIEYLMETLQKQLLALHNLGARKLMVFGLGPM GCIPLQRVLSTSGQCQERANKLALSFNKAASNLLVNLASKLPNASFKFGDAYDVVNDV IRNPYKYGFNNSDSPCCSLGNIRPALTCLPTSTLCEDRSKYVFWDEYHPSDSANELIA NELIKKFGFLDVNSHAPAPAPESAIAPSPDE" gene complement(19328054..19367233) /locus_tag="TCM_014028" /note="dbxref CacaoGD:Thecc1EG014028" mRNA complement(join(19328054..19328220,19359924..19360884, 19361530..19361961,19363381..19363562,19363648..19363723, 19364099..19364779,19365311..19365415,19365506..19366020, 19367203..19367233)) /locus_tag="TCM_014028" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g35480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014964t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" mobile_element complement(19328368..19330048) /note="source:INTACT566_F257_scaffold_7-int 3839 5510" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19330240..19330328 /note="source:scaffold_4_CACTA_0500 3000 3091" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19330440..19330951 /note="source:INTACT135_F42_scaffold_4-int 10147 10658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19335249..19335556 /note="source:INTACT135_F42_scaffold_4-int 1820 2128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19335962..19336513 /note="source:INTACT135_F42_scaffold_4-int 12691 13238" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19337466..19340184) /locus_tag="TCM_014030" /note="dbxref CacaoGD:Thecc1EG014030" mRNA complement(join(19337466..19338265,19339220..19339422, 19339632..19340184)) /locus_tag="TCM_014030" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is noncode_complete; similar to RNA sequence, EST 0.38 coverage" mobile_element complement(19338087..19338421) /note="source:INTACT566_F257_scaffold_7-int 438 753" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19338151..19338565 /note="source:scaffold_5_CACTA_0612 6594 7033" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(19338238..19338265,19339220..19339401)) /locus_tag="TCM_014030" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21878.1" /translation="MAQSSTKVEYMAAALAANHTLWPRKMLKDRGFKQNEGNVLWINN RSVIAIAQNPMYQGRTKKSLLNFEG" gene complement(19340858..19363959) /locus_tag="TCM_014031" /note="dbxref CacaoGD:Thecc1EG014031" mRNA complement(join(19340858..19340868,19347311..19347333, 19356353..19356356,19356418..19356918,19357000..19358310, 19363518..19363959)) /locus_tag="TCM_014031" /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002052t1" /inference="similar to AA sequence:Phytozome:Glyma06g23600.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc115t2_G3" mobile_element 19345306..19345691 /note="source:CACAO_M_S_E38315_F276_scaffold_4 4873 5258" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19346227..19346675) /note="source:INTACT135_F42_scaffold_4-int 4966 5415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19346776..19347191) /note="source:CACAO_M_E11415_F328_scaffold_2 5103 5518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19347197..19349982 /note="source:CACAO_M_E22632_F87_scaffold_3 1 2786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19352189..19353712) /note="source:INTACT1313F_F380_scaffold_7-int 1482 2841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19354633..19368310 /note="source:INTACT700_F304_scaffold_7-int 3432 16260" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(19356527..19356918,19357000..19357909)) /locus_tag="TCM_014031" /note="paralog of Thecc1EG002052t1" /codon_start=1 /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative" /protein_id="EOY21879.1" /db_xref="Phytozome:Glyma06g23600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q2J0" /translation="MADALATLAVMFKVGTNVKIQSIMINLRECPAHYSSVKEEIDGK PWYHDIVHYLKFQQYPDQSSESDNKTIRRFAMNFFLDGNILYKRSRDQMLLRCVDSTE ARRIVEEVHEGVCGAHVSGHKLARQVMRVGYYWLTLETDCIDFARKCHKCQIYADRIH TLANSLHVLTSPWPFSMWGMDVIGLITPKASNEHRFILVAIDYFSKWVEAASYANVTQ KVVCKFIQKEIICRYGLPKRIITDNASNLNGSMMKEVCAKFKIKHHNSTPYRPKMNGA VEAANENIKRIIEKMTDIYKDWHEKLPFLLIEVEIPSLRVLKEVHLEEAEWVNARYEQ LNLIEEKRLTALCHGQLYQKRMMRAYGKKAHSRQFREGELVLKRILPNQHDPCGKWTP NWEGPFVVKKAFSGGALILTEMDGREFSNPVNADAVKKYFA" gene complement(19362198..19364660) /locus_tag="TCM_014033" /note="dbxref CacaoGD:Thecc1EG014033" mRNA complement(join(19362198..19363322,19363455..19363562, 19363648..19363723,19364099..19364660)) /locus_tag="TCM_014033" /product="Gag-pro-like protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g35480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038622t1" /inference="similar to AA sequence:Phytozome:Glyma09g22800.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc8790t2" CDS complement(19362466..19363242) /locus_tag="TCM_014033" /note="paralog of Thecc1EG038622t1" /codon_start=1 /product="Gag-pro-like protein" /protein_id="EOY21880.1" /db_xref="Phytozome:Glyma09g22800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0E2V7" /translation="MYCRRMTAYAHDDKLLIHCFQDSLTDAAAKWYVQLDRNRIHKWK DLARAFVAQYKHVIDMAPDRLSLQNMEKKTTESFKEYVQRWRNVASQVQPPLTEKETI VMFVNTLRAPYYERLVGSAIKNFADMVISGEMIETAIKQGKIEGGDTRNTRKGGTFKR KEGEAQAITSGQHQGGTYNPYQPYLPYPYYPAVNNTSQSPYLYPPMPNAFPNPYPYNP IQRTPYPINIHPPTSTPVIASTTQQTTPSNNHTTGELRGW" CDS complement(join(19363561..19363562,19363648..19363723, 19364099..19364779,19365311..19365415,19365506..19365970)) /locus_tag="TCM_014028" /note="paralog of Thecc1EG014964t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21877.1" /translation="MALSSAGPLNIYRNDYEIELQMGHIQQEKGDCLTQGHVPILLER VHLDLQQNDFTDMVGIWEQWRRAHRDNFQNKYGHIAWLLYVPVDDQMLRAIVQFWDPS YRCFVFNKVDMTPTIEEYSSLLRIDHMHPDKIYWRAQKTGHRRKLAKLLGMTTGEQGL LAFAMAIYGLVVFPKVLGHVEVLVIDFFDQGRVTDEVTTGYHTWHDQRVKNVIRPPKN LSKHPINPEPQDVLLESELTRKRLEKEMMNMKRRHEDELGEVKKETARKVRVALKERD EWQSKFEEVSVANSSLLARIQELQSANNALQHEVRRQGQTIQELKNDCDLLETAMEGY KAQYEAVRQEYFQMKERNDSCTQSLQRKEAEMQWILRQMREVAFRARVMADKTEELKR EILPKDELSERLIDHLKMVRDQYDKIKERERQGVLVHQKTFNRQKPIQTL" mobile_element complement(19369150..19369385) /note="source:CACAO_Mutator_E1149_scaffold_5 4277 4519" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19369287..19369646 /note="source:CACAO_M_E58877_F5_scaffold_9 8052 8351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19369635..19372986 /note="source:INTACT752_F321_scaffold_5-int 1665 5078" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19372970..19373188 /note="source:INTACT752_F321_scaffold_5-int 90 323" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(19373723..19380440) /locus_tag="TCM_014036" /note="dbxref CacaoGD:Thecc1EG014036" mRNA complement(join(19373723..19374630,19375542..19375662, 19375754..19375812,19375894..19375985,19379129..19379259, 19379441..19379536,19379669..19379789,19379863..19380067, 19380156..19380440)) /locus_tag="TCM_014036" /product="Disulfide bond formation protein B 2, putative" /inference="alignment:exonerate- protein:2:ricco:30138.m004066" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1417t3_C2" CDS complement(join(19374629..19374630,19375542..19375662, 19375754..19375812,19375894..19375985,19379129..19379247)) /locus_tag="TCM_014036" /codon_start=1 /product="Disulfide bond formation protein B 2, putative" /protein_id="EOY21881.1" /translation="MREYIPELMPLIVEALLDGAAVTKREVAVATLRQVVQSTGKSAM ESTLFRMIVVLLGLYHIVCLNAVPITRIGSLTHGAQVHQVPENTHLVAAEKSSEAQII KGRMVVELNDYPGSGANNRHTPRPQFGR" mobile_element complement(19383666..19383746) /note="source:CACAO_M_S_E6055_F310_scaffold_2 14564 14637" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19384009..19387324 /locus_tag="TCM_014038" /note="dbxref CacaoGD:Thecc1EG014038" mRNA join(19384009..19384242,19386019..19386077, 19386386..19387324) /locus_tag="TCM_014038" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(19384203..19384242,19386019..19386077, 19386386..19386502) /locus_tag="TCM_014038" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21882.1" /translation="MSYQTVQDREGIIIYSCHQSFGQVKILDKLWHMASQTQHSQGIS LATDTILSKPKKKKENMSVRTPGPFQV" mobile_element complement(19393749..19393852) /note="source:CACAO_M_S_E122122_F42_scaffold_10 1326 1418" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19393853..19396948 /note="source:CACAO_M_E22637_F42_scaffold_3 1 3096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19398577..19398627 /note="source:CACAO_M_E84368_F4_scaffold_10 5123 5172" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19399993..19402786) /note="source:CACAO_M_E85668_F15_scaffold_11 1 2778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19403372..19406326 /note="source:CACAO_M_E22639_F33_scaffold_3 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19408815..19413548 /locus_tag="TCM_014040" /note="dbxref CacaoGD:Thecc1EG014040" mRNA join(19408815..19409196,19410589..19411014, 19412374..19412500,19413368..19413548) /locus_tag="TCM_014040" /product="Cycling DOF factor 2, putative" /inference="alignment:exonerate- protein:2:ricco:30138.m004065" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018573t1" /inference="similar to AA sequence:Phytozome:Glyma05g00970.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01798t00001" CDS join(19409014..19409196,19410589..19411014, 19412374..19412427) /locus_tag="TCM_014040" /note="paralog of Thecc1EG018573t1" /codon_start=1 /product="Cycling DOF factor 2, putative" /protein_id="EOY21883.1" /db_xref="Phytozome:Glyma05g00970.1" /db_xref="TAIR:AT5G39660.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IJZ2" /translation="MQESKDHVIKLFGQKIHLPTDGEISTISANDFDKAKCGNRVVVV EEEEEEEDEEEKEKTEQDSLAEKTTKTGQEDDTPPSNTKEATNPSTSPEPNVNHKTPS IDEETKKTKTGKTDKEQSDATNSQKKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQP HHFCKACQRYWTTSGTMRNMPVGAGRRKNKNSASHYRHISIYEWSSIDVVNYVLYIVD RW" mobile_element complement(19411021..19411566) /note="source:CACAO_M_E69760_F9_scaffold_9 9104 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19411840..19413978) /note="source:CACAO_M_E69760_F9_scaffold_9 6705 8829" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19413669..19415072 /locus_tag="TCM_014041" /note="dbxref CacaoGD:Thecc1EG014041" mRNA 19413669..19415072 /locus_tag="TCM_014041" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30138.m004065" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018573t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s12080.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS 19413862..19414590 /locus_tag="TCM_014041" /note="paralog of Thecc1EG018573t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21884.1" /db_xref="Phytozome:POPTR_0017s12080.1" /translation="MWKLMLSLARFRSAFGVMSAYRDVAAVVKGPIGVPGRDTLQVAR IDAPNGSHHHALKCNGRVLNFGIDAPICDSMASVLNLGENKVMNGTRNGFHGLEEDKI SVPCRGENGDNCSSGSSITISNSMEEGGKSCIQETMMGNINGFPSPIPCLPSVPWPYP WNSTVPLPAFCPFGFPMSFYPAAAYWNCGIPSTWNIPWLSPQSSSLNQKPPTFRPNSS TLRKHSREGDIAKLDDSEKEKPSK" gene complement(19418609..19424633) /locus_tag="TCM_014042" /note="dbxref CacaoGD:Thecc1EG014042" mRNA complement(join(19418609..19418992,19419083..19419167, 19422513..19422551,19424243..19424633)) /locus_tag="TCM_014042" /product="HNH endonuclease isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g10930.1" /inference="similar to AA sequence:ricco:30138.m004064" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8491t1" mRNA complement(join(19418666..19418962,19419083..19419167, 19422513..19422551,19424243..>19424611)) /locus_tag="TCM_014042" /product="HNH endonuclease isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g10930.1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007991001" /inference="similar to AA sequence:ricco:30138.m004064" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1149t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8491t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1145t5_C2" CDS complement(join(19418910..19418992,19419083..19419167, 19422513..19422551,19424243..19424620)) /locus_tag="TCM_014042" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m004064" /codon_start=1 /product="HNH endonuclease isoform 1" /protein_id="EOY21885.1" /db_xref="TAIR:AT3G47490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GT71" /translation="MIMHGKDSKSKRRTSSRPSSPPRSRSSKLTPPSASLVDGEPVTD RERSSTITSLFEDLQISQDVNSNPRSFPYSVKQQCWEKAEKVKGRDPDRWRRDTVGNI VFRKLVGCPGCLCHDYDHIIPYSKGGKSTLENCQVLQATVNRSKGNRTELSRADLIQR SSYCRVSGRDMDLIELSAYGNVRHTEDPAGCRIQ" CDS complement(join(19418910..19418962,19419083..19419167, 19422513..19422551,19424243..>19424611)) /locus_tag="TCM_014042" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m004064" /codon_start=1 /product="HNH endonuclease isoform 2" /protein_id="EOY21886.1" /db_xref="TAIR:AT3G47490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GT71" /translation="HGKDSKSKRRTSSRPSSPPRSRSSKLTPPSASLVDGEPVTDRER SSTITSLFEDLQISQDVNSNPRSFPYSVKQQCWEKAEKVKGRDPDRWRRDTVGNIVFR KLVGCPGCLCHDYDHIIPYSKGGKSTLENCQVLQATVNRSKGNRTELSRADLIQRSSY CRVSAYGNVRHTEDPAGCRIQ" mobile_element complement(19419857..19420066) /note="source:CACAO_on_E279_scaffold_9 8205 8432" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(19426484..19428489) /locus_tag="TCM_014044" /note="dbxref CacaoGD:Thecc1EG014044" mRNA complement(join(19426484..19427061,19427443..19427610, 19427978..19428489)) /locus_tag="TCM_014044" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024743t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(join(19426529..19427061,19427443..19427610, 19427978..19428167)) /locus_tag="TCM_014044" /note="paralog of Thecc1EG024743t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21887.1" /translation="MRRLLRSCPGKMCLTTNTWISIQRINYICLITHFIDNDWKLQKR ILNFCPITSHKGKAISKAITLKFQRAFTSFELCDNSYIPELIRLGDGVPDDRDWVNVM RISSFLREFYDLTLSVLGTSGGCSDSVASTLIGKDTKRTKKRLDRFKTHQLNTRSKEL KTELEKYLSELVDDGGFDDDKFDVLMWWKLNQFRFPVVVAIAHDVLAVPVSTIASEYA FSTGERVLDAYRSSLTPKVVQALICTQDWLHGLARGDPDLIEDDLDELDKLDFDNYFI YNLIYLICQKLIYHICYFIF" mobile_element 19428449..19431048 /note="source:CACAO_M_E22641_F53_scaffold_3 1 2600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19433843..19436935 /note="source:CACAO_M_S_E32183_F51_scaffold_3 1 3093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19441277..19443364 /note="source:INTACT51F_F15_scaffold_1-int 1 2096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19451167..19451847 /note="source:INTACT51F_F15_scaffold_1-int 10630 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19451836..19452176 /note="source:CACAO_M_S_E32186_F4_scaffold_3 1 341" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19452825..19458472 /note="source:CACAO_M_S_E32186_F4_scaffold_3 342 5989" /mobile_element_type="retrotransposon:LTR/Copia" gene 19459550..19463977 /locus_tag="TCM_014047" /note="dbxref CacaoGD:Thecc1EG014047" mRNA join(19459550..19459845,19460167..19460237, 19460667..19460907,19461600..19461838,19462653..19462801, 19463553..19463977) /locus_tag="TCM_014047" /product="Biotin/lipoate A/B protein ligase family" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007990001" /inference="similar to AA sequence:Phytozome:GSVIVT01007990001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00259t00003" CDS join(19460729..19460907,19461600..19461838, 19462653..19462801,19463553..19463765) /locus_tag="TCM_014047" /codon_start=1 /product="Biotin/lipoate A/B protein ligase family" /protein_id="EOY21888.1" /db_xref="Phytozome:GSVIVT01007990001" /db_xref="TAIR:AT3G29010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AEH8" /translation="MPIPQTRNIGLPMMNLLRFKGLPILQQLHIEEQLLRTSSENWCI INDGTNDPTIVMGVSGKPAELLEIESVLRDQVPVIRRFTGGGTVIVDCGTIFATFICN KEAVPDLQPYPRPIMSWSSLLYGKVFQGIGDFHLRENDYVFGNHKFGGNAQSITKSRW IHHTSFLWDFDVRNMTYLKLPKRAPEYRSARGHLDFICCMKDYMPRSTFINKTVEATG TQFSLRSYPLEAIETGSETEFYPSTRFLTDEELEAAAAAGQ" misc_feature 19461814..19462801 /locus_tag="TCM_014047" /note="Gene fragment of Thecc1EG014047t1; dbxref gnl|CacaoGD|Thecc1EG014047t1; quality class is mediumpartial-partof is thecc1eg014047t1, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1211t12; dbxref CacaoGD:Thecc1EG014049t1" gene 19464658..19465927 /locus_tag="TCM_014050" /note="dbxref CacaoGD:Thecc1EG014050" mRNA join(19464658..19464865,19465005..19465420, 19465505..19465927) /locus_tag="TCM_014050" /product="Light-harvesting chlorophyll-protein complex I subunit A4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007988001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008821t1" /inference="similar to AA sequence:Phytozome:Glyma04g33360.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8488t1" CDS join(19464660..19464865,19465005..19465420, 19465505..19465641) /locus_tag="TCM_014050" /note="paralog of Thecc1EG008821t1" /codon_start=1 /product="Light-harvesting chlorophyll-protein complex I subunit A4" /protein_id="EOY21889.1" /db_xref="Phytozome:Glyma04g33360.1" /db_xref="TAIR:AT3G47470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P27521" /translation="MATVSTQASAAVFRPRASKTRFLTGSSSKLNRKVCFKPTASTTP SSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWA MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDI KNPGCVNQDPIFKQYSLPPHECGYPGSIFNPLNLAPTPEAKEKELANGRLAMLAFLGF VVQHSVTGKGPFDNLLQHLSDPWHNTIINTIRGY" gene complement(19465001..19472481) /locus_tag="TCM_014051" /note="dbxref CacaoGD:Thecc1EG014051" mRNA complement(join(19465001..19466327,19467196..19467580, 19468380..19468507,19468577..19468624,19468926..19469022, 19469928..19469989,19470194..19470262,19470383..19470401, 19470495..19470554,19471301..19471486,19472209..19472481)) /locus_tag="TCM_014051" /product="AGAMOUS-like 65, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007989001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011687t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007989001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:PASA:2:TSA:puevd3b013584t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3922t4" mRNA complement(join(19466004..19466327,19467196..19467580, 19467814..19467851,19468418..19468507,19468577..19468624, 19468926..19469022,19469928..19469989,19470086..19470101, 19470198..19470262,19470383..19470401,19470495..19470554, 19471301..19471486,19472209..19472332)) /locus_tag="TCM_014051" /product="AGAMOUS-like 65, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007989001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011687t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007989001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc160t24; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc160t24" CDS complement(join(19466268..19466327,19467196..19467580, 19467814..19467851,19468418..19468507,19468577..19468624, 19468926..19469022,19469928..19469989,19470086..19470101, 19470198..19470262,19470383..19470401,19470495..19470554, 19471301..19471485)) /locus_tag="TCM_014051" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011687t1" /codon_start=1 /product="AGAMOUS-like 65, putative isoform 1" /protein_id="EOY21890.1" /db_xref="Phytozome:GSVIVT01007989001" /db_xref="TAIR:AT1G18750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EAD6" /translation="MGRVKLKIKRLESTSNRQVTYSKRRTGILKKAKELSILCDIDII LLMFSPTGRPTLFHGEHSNIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVN IQDFIGATSQSVEEMNNEVSMLQAQLTEVHKRLSYWSNPDKIDNIEHLRQMEDILRES IERIRMHKENFGKHHLMPLECTSQFQNGIPLPMMIGGVQEAQPVTWLPNNDNQHMLLH NEPSFLPHRDAECSADGSFAGYSGFFGSGKQIEIGSSGQVDNVVQESSALNELGSNAC LSLQLGEQYLYPPYSASNLQDDEKLKPEMEVNLPGNPAVYQVVSNFEIPRPMYNGGPQ ARISSSGPCGIMMFDGNSYHQQTKSTFMNQTPPSGELHNL" CDS complement(join(19466268..19466327,19467196..19467580, 19468380..19468507,19468577..19468624,19468926..19469022, 19469928..19469989,19470194..19470262,19470383..19470401, 19470495..19470554,19471301..19471485)) /locus_tag="TCM_014051" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011687t1" /codon_start=1 /product="AGAMOUS-like 65, putative isoform 2" /protein_id="EOY21891.1" /db_xref="Phytozome:GSVIVT01007989001" /db_xref="TAIR:AT1G18750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EAD6" /translation="MGRVKLKIKRLESTSNRQVTYSKRRTGILKKAKELSILCDIDII LLMFSPTGRPTLFHGEHSNIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVN IQDFIGATYEMNNEVSMLQAQLTEVHKRLSYWSNPDKIDNIEHLRQMEDILRESIERI RMHKENFGKHHLMPLECTSQFQNGIPLPMMIGGVQEAQPVTWLPNNDNQHMLLHNEPS FLSHRDAECSADGSFAGYSGFFGSGKQIEIGSSGQVDNVVQESSALNELGSNACLSLQ LGEQYLYPPYSASNLQDDEKLKPEMEVNLPGNPAVYQVVSNFEIPRPMYNGGPQARIS SSGPCGIMMFDGNSYHQQTKSTFMNQTPPSGELHNL" mRNA complement(join(<19466297..19466327,19467196..19467580, 19468380..19468507,19468577..19468624,19468926..19469022, 19469928..19469989,19470086..19470101, 19470198..>19470233)) /locus_tag="TCM_014051" /product="AGAMOUS-like 65, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007989001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011687t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007989001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13837t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3922t4; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc160t24" CDS complement(join(<19466298..19466327,19467196..19467580, 19468380..19468507,19468577..19468624,19468926..19469022, 19469928..19469989,19470086..19470101, 19470198..>19470232)) /locus_tag="TCM_014051" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG011687t1" /codon_start=1 /product="AGAMOUS-like 65, putative isoform 3" /protein_id="EOY21892.1" /db_xref="Phytozome:GSVIVT01007989001" /db_xref="TAIR:AT1G18750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EAD6" /translation="HDVNIQDFIGATSQSVEEMNNEVSMLQAQLTEVHKRLSYWSNPD KIDNIEHLRQMEDILRESIERIRMHKENFGKHHLMPLECTSQFQNGIPLPMMIGGVQE AQPVTWLPNNDNQHMLLHNEPSFLSHRDAECSADGSFAGYSGFFGSGKQIEIGSSGQV DNVVQESSALNELGSNACLSLQLGEQYLYPPYSASNLQDDEKLKPEMEVNLPGNPAVY QVVSNFEIPRPMYNGGPQARISSSGPCGIMMFDGNSYHQQTKSTFMNQT" mobile_element 19473637..19474401 /note="source:CACAO_M_E49809_F2_scaffold_7 1 759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19474498..19477950) /note="source:CACAO_M_E178_F2_scaffold_1 3 3452" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19475552..19480752) /locus_tag="TCM_014052" /note="dbxref CacaoGD:Thecc1EG014052" mRNA complement(join(19475552..19475576,19477959..19478604, 19478758..19479070,19479189..19479319,19480561..19480752)) /locus_tag="TCM_014052" /product="Expansin A1, ALPHA 1.2,EXPA1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g04490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011686t1" /inference="similar to AA sequence:ricco:30138.m004059" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6552t1" CDS complement(join(19478298..19478604,19478758..19479070, 19479189..19479319,19480561..19480682)) /locus_tag="TCM_014052" /note="dbxref ricco:30138.m004059; paralog of Thecc1EG011686t1" /codon_start=1 /product="Expansin A1, ALPHA 1.2,EXPA1" /protein_id="EOY21893.1" /db_xref="TAIR:AT1G69530.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LKJ8" /translation="MNTGAIFPLTSGISCERRPLFFMADILIDEDKIGRSLQLEREMA LFGLVLMGFLPLFSHAYGYGGGWIGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNT AALSTALFNNGLSCGACFEIKCVNDPRWCLPGSIVVTATNFCPPNSALPNTAGGWCNP PHHHFDLSQPVFQRIAQYRAGIVPVAYRRVPCRKRGGIRFTINGHSYFNLVLITNVGG AGDVHSVSIKGSKIGWQPMSRNWGQNWQSKTYLNGQSLSFKVTTSDGRTLVSNNVVPP NWSFGQTFTGLQFP" mobile_element 19481612..19482766 /note="source:CACAO_PIF_E144_scaffold_10 1203 2349" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 19483128..19484695 /note="source:scaffold_4_CACTA_0492 8001 9545" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19484796..19485770 /note="source:CACAO_M_S_E86211_F313_scaffold_7 2036 3010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19486124..19486185) /note="source:CACAO_M_E42348_F54_scaffold_5 1163 1209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19486139..19486196 /note="source:CACAO_M_E14347_F12_scaffold_3 8780 8838" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19496391..19501819 /locus_tag="TCM_014053" /note="dbxref CacaoGD:Thecc1EG014053" mRNA join(19496391..19496973,19497051..19497142, 19498206..19498303,19498442..19498987,19499865..19500465, 19500563..19500720,19501112..19501819) /locus_tag="TCM_014053" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is weak, protein is noncode_complete; similar to RNA sequence, EST 0.65 coverage" CDS join(19500435..19500465,19500563..19500720, 19501112..19501243) /locus_tag="TCM_014053" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21894.1" /translation="MAIPLSSGWIVGTWDIDFLLQSLPYQVLLRVVAMQIDTLSKDDD VAYWRLTSNGLFLVRATYESSIYGIGEINNFLMQLSLGLLMVGTGYGPKPSMLGIILA ERLD" gene complement(19503665..19505506) /locus_tag="TCM_014055" /note="dbxref CacaoGD:Thecc1EG014055" mRNA complement(join(19503665..19504374,19504477..19504641, 19504943..19505122,19505237..19505506)) /locus_tag="TCM_014055" /product="Thioredoxin II, putative" /inference="alignment:exonerate- protein:2:ricco:30138.m004058" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026024t1" /inference="similar to AA sequence:ricco:30138.m004058" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11218t00001" CDS complement(join(19504123..19504374,19504477..19504641, 19504943..19505122,19505237..19505476)) /locus_tag="TCM_014055" /note="dbxref ricco:30138.m004058; paralog of Thecc1EG026024t1" /codon_start=1 /product="Thioredoxin II, putative" /protein_id="EOY21895.1" /db_xref="TAIR:AT5G61440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLX0" /translation="MACSLNWGSYLSGFNGTVVASNSNRVAWFGTSLTSLESKDSTSK KFPLLSIDFVGKPLVVPDQKGSRNWSSKPGNRFSVQARTACVSRAMRWWEKNLKPNMV KIHSADELVDSLQNAGDRLVIIDFYSPGCGGCKALHPKICQLAEQNPNAIFLEVNYED LNNMCQCLDIHVLPFFRFYRGAKGRVCSFSCTNATIKKFKDALAKHGADRSSLGPAKG LDESELMTLASAGELSTNFELPSTKEKRLEDLLMRRVELSGIMKNADNSKMELKEEAA LL" mobile_element complement(19506094..19506176) /note="source:CACAO_PIF_E144_scaffold_10 2941 3028" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(19509652..19515757) /note="source:INTACT566_F257_scaffold_7-int 2 6010" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19518845..19519150) /note="source:CACAO_M_E13757_F15_scaffold_3 2790 3095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19519525..19520003) /note="source:CACAO_M_E3465_F15_scaffold_1 9375 9853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19520104..19520665 /note="source:CACAO_M_E101_F15_scaffold_1 1186 1747" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19520901..19522016) /note="source:CACAO_M_E85909_F15_scaffold_12 1 1114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19524977..19525334) /note="source:CACAO_M_S_E7818_F60_scaffold_2 19410 19648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19527342..19527799) /note="source:CACAO_M_S_E14932_F233_scaffold_2 8067 8523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19537431..19537650) /note="source:CACAO_M_S_E14932_F233_scaffold_2 7833 8072" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19538070..19563141) /locus_tag="TCM_014058" /note="dbxref CacaoGD:Thecc1EG014058" mobile_element complement(19542826..19542845) /note="source:CACAO_M_E84908_F12_scaffold_10 9585 9603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19542846..19546026 /note="source:CACAO_M_E22653_F328_scaffold_3 1 3181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19546237..19546945 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17252 17965" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(19548090..19549877) /locus_tag="TCM_014059" /note="dbxref CacaoGD:Thecc1EG014059" mRNA complement(join(19548090..19548607,19548823..19548894, 19548993..19549048,19549153..19549324,19549484..19549531, 19549623..19549877)) /locus_tag="TCM_014059" /product="NDH dependent flow 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004672001" /inference="similar to AA sequence:Phytozome:GSVIVT01005334001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00595t00001" mRNA complement(join(19548273..19548607,19548993..19549048, 19549153..19549324,19549484..19549625)) /locus_tag="TCM_014059" /product="NDH dependent flow 6 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004672001" /inference="similar to AA sequence:Phytozome:GSVIVT01005334001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3519t2; inference alignment:Newbler:10:TSA:cgbaL_g00595t00001" CDS complement(join(19548494..19548607,19548823..19548894, 19548993..19549048,19549153..19549324,19549484..19549531, 19549623..19549718)) /locus_tag="TCM_014059" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NDH dependent flow 6 isoform 1" /protein_id="EOY21897.1" /db_xref="Phytozome:GSVIVT01005334001" /db_xref="TAIR:AT1G18730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2Y5" /translation="MAEAIVSFTLTKPCINSYLHAAKSDSCPSSRLLRRRSSTRLFNY GKQQTEGSNSRRGVASVKANAFPDWPLMAVLVHNVQQLDAQREIITNKSIWHLSEEAI KNVYTFYIMFTCWGCLFFGSTKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEESARAEL WREELIEEIEQKVGGLRELEEAGRK" CDS complement(join(19548494..19548607,19548993..19549048, 19549153..19549324,19549484..19549543)) /locus_tag="TCM_014059" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NDH dependent flow 6 isoform 2" /protein_id="EOY21898.1" /db_xref="Phytozome:GSVIVT01005334001" /db_xref="TAIR:AT1G18730.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2Y5" /translation="MHLQLRRRSSTRLFNYGKQQTEGSNSRRGVASVKANAFPDWPLM AVLVHNVQQLDAQREIITNKSIWHLSEEAIKNVYTFYIMFTCWGCLFFGSTKQEDIEE SARAELWREELIEEIEQKVGGLRELEEAGRK" mobile_element 19550693..19550750 /note="source:CACAO_M_E44848_F172_scaffold_6 1899 1959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19550717..19550798) /note="source:CACAO_M_E44848_F172_scaffold_6 1910 1959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19550771..19550864) /note="source:CACAO_M_E44848_F172_scaffold_6 1910 1959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19552279..19555123) /note="source:CACAO_M_S_E64023_F13_scaffold_5 13489 15845" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(19553793..19553842,19554219..19554587, 19563010..19563141)) /locus_tag="TCM_014058" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS complement(19554353..19554547) /locus_tag="TCM_014058" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21896.1" /translation="MPCGKFKLLYYLTMKIIPHHHFSLIRVGFGKKTKGKRRTNPRWK EIQEKSVDFQENQVEKGELS" mobile_element complement(19555209..19558316) /note="source:INTACT561_F253_scaffold_5-int 1644 4743" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19558282..19558312) /note="source:CACAO_M_E52617_F328_scaffold_7 3023 3209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19558313..19558467) /note="source:scaffold_5_CACTA_0610 4243 4397" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19558458..19560717) /note="source:CACAO_M_E22484_F328_scaffold_3 1 2260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19560660..19560731 /note="source:INTACT405F_F91_scaffold_4-int 7546 7615" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19560718..19563392) /note="source:CACAO_M_E58957_F253_scaffold_9 1 2665" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19565416..19565636 /note="source:scaffold_5_CACTA_0610 5115 5316" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19565652..19565963 /note="source:CACAO_on_S_E390_scaffold_9 2391 2688" /mobile_element_type="transposon:TIR/Mutator" gene 19566605..19569257 /locus_tag="TCM_014060" /note="dbxref CacaoGD:Thecc1EG014060" mRNA join(19566605..19567070,19568467..19568511, 19568589..19568660,19568754..19569257) /locus_tag="TCM_014060" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene26041" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011673t1" /inference="similar to AA sequence:frave:gene26041" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:PASA:2:TSA:puevd3b013592t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00463t00003" mRNA join(19566620..19567070,19568449..19568511, 19568589..19568660,19568754..19569011) /locus_tag="TCM_014060" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene26041" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011673t1" /inference="similar to AA sequence:frave:gene26041" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00463t00003; inference alignment:Newbler:10:TSA:cgbaB_g00463t00003" CDS join(19566714..19567070,19568449..19568511, 19568589..19568660,19568754..19568870) /locus_tag="TCM_014060" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene26041; paralog of Thecc1EG011673t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21899.1" /db_xref="TAIR:AT1G18720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9U3" /translation="MGKPGLFDLENHFAFYGAYHSNPINILIHTLFVWPIFFTSLVLF YFTPTVYDLSQSGILPSGLNPVLILNYGFVFALIYGLFYVILDKKAGSLAALLCLACW VGASFLAAKLGYSLAWKVVLAAQLFCWTGQFLGHGVFEKRAPALLDNLVQAFLMAPFF VLLEVLQSFFGYEPSPGFHARVKAKIEAEIKEWQDKKQKKVS" CDS join(19566714..19567070,19568467..19568511, 19568589..19568660,19568754..19568870) /locus_tag="TCM_014060" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene26041; paralog of Thecc1EG011673t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21900.1" /db_xref="TAIR:AT1G18720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9U3" /translation="MGKPGLFDLENHFAFYGAYHSNPINILIHTLFVWPIFFTSLVLF YFTPTVYDLSQSGILPSGLNPVLILNYGFVFALIYGLFYVILDKKAGSLAALLCLACW VGASFLAAKLGYSLAWKLFCWTGQFLGHGVFEKRAPALLDNLVQAFLMAPFFVLLEVL QSFFGYEPSPGFHARVKAKIEAEIKEWQDKKQKKVS" gene complement(19569332..19575551) /locus_tag="TCM_014062" /note="dbxref CacaoGD:Thecc1EG014062" mRNA complement(join(19569332..19569789,19570759..19570828, 19575353..19575551)) /locus_tag="TCM_014062" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(19569457..19569789,19570759..19570797)) /locus_tag="TCM_014062" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21901.1" /translation="MILDSIRFVWLYLDIKPAYEASKQKPSCILFKYKAALDLYLRML RKAGKAGQPTLIVLGLHSRAMRMRPWGTRWYSFLGSLCACSHGRMIDERSRQENLDTM SKREHSEPAIKHCGITVDMMG" mobile_element 19571654..19573272 /note="source:scaffold_1_CACTA_0024 3170 4778" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19572413..19573344 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3631 4609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19572417..19573480) /note="source:CACAO_M_E5627_F4_scaffold_2 1 1093" /mobile_element_type="retrotransposon:LTR/Copia" gene 19573826..19580383 /locus_tag="TCM_014064" /note="dbxref CacaoGD:Thecc1EG014064" mRNA join(19573826..19574246,19580362..19580383) /locus_tag="TCM_014064" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024978t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 19573915..19574181 /locus_tag="TCM_014064" /note="paralog of Thecc1EG024978t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21902.1" /translation="MDDNLAEVKAIWKAVQMFVASRWAPIKVILESDSTNTIKWVLVL SFAWNLRFIIIQIEYFKATINSWEIVKIPRLANDVADSLAKAEV" mobile_element 19577622..19577658 /note="source:INTACT199_F5_scaffold_6-int 8863 8909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19577659..19587647) /note="source:CACAO_M_E43698_F13_scaffold_5 249 10244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19587648..19590443 /note="source:CACAO_M_E42855_F15_scaffold_5 1 2783" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19590277..19590463) /note="source:INTACT204_F15_scaffold_7-int 10737 10924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19590445..19590694) /note="source:INTACT125_F13_scaffold_10-int 1 251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19590631..19590703) /note="source:CACAO_M_E42514_F40_scaffold_5 14438 14511" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19592461..19595116) /note="source:CACAO_M_E52239_F256_scaffold_7 19810 22474" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19604419..19605608) /note="source:CACAO_M_E47740_F12_scaffold_6 5606 6720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19605502..19605628) /note="source:INTACT563_F255_scaffold_10-int 2429 2558" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19605627..19606367) /note="source:INTACT687_F13_scaffold_3-int 1297 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19606346..19606528) /note="source:CACAO_M_E52239_F256_scaffold_7 21089 21268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19625727..19626035) /note="source:CACAO_M_S_E119160_F14_scaffold_9 9660 9968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19626541..19626624 /note="source:CACAO_M_E22348_F13_scaffold_3 6653 6736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19626552..19631795) /note="source:CACAO_M_S_E122136_F76_scaffold_10 10270 15482" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19629796..19633163 /note="source:INTACT759_F323_scaffold_6-int 4709 8077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19638661..19638936 /note="source:CACAO_M_E4027_F323_scaffold_2 5393 5668" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19639037..19639410) /note="source:CACAO_M_E56693_F323_scaffold_8 1 376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19639411..19640597) /note="source:CACAO_M_S_E2082_F233_scaffold_1 1 1182" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19644658..19644687) /note="source:scaffold_4_CACTA_0490 3129 3202" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19644688..19644767 /note="source:CACAO_M_S_E85757_F233_scaffold_7 1542 1625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19644768..19644786) /note="source:scaffold_4_CACTA_0490 3077 3128" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19655172..19655575) /note="source:CACAO_M_E4676_F9_scaffold_2 1016 1420" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19655581..19657485 /note="source:CACAO_M_S_E101224_F9_scaffold_9 4744 6638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19657477..19660960) /note="source:CACAO_M_S_E51162_F9_scaffold_4 1479 4978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19661836..19664404) /note="source:CACAO_Again_on_S_E75_scaffold_2 988 3545" /mobile_element_type="transposon:TIR/hAT" mobile_element 19664337..19664414 /note="source:CACAO_M_E11054_F12_scaffold_2 13449 13525" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19666617..19668304) /locus_tag="TCM_014071" /note="dbxref CacaoGD:Thecc1EG014071" mRNA complement(join(19666617..19667015,19667133..19667268, 19667486..19667559,19667713..19667923,19668016..19668304)) /locus_tag="TCM_014071" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(19666807..19667015,19667133..19667268, 19667486..19667559,19667713..19667923,19668016..19668225)) /locus_tag="TCM_014071" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21903.1" /translation="MIINGAVHNVNSGCKKKNKEDDSVPGHSRVKDAGCKFTTKTLDE ILIDESKVMTESRNENMGSVGGFNGGGYVVGWDSYMRRQCASKIRFEGGKSSGGKKMQ VDLQDMNNVDVGMLHVGEQMDSGLFQGKNFENKMLQTGWNQLNRKRKVMKSKLKVKKV EKHSKFGYDYCFTMDAVDRVKGLAVLWKKETLLTVKSFSRNQINIEIMLRGDFNEIFY DSEKLGGVDKSESQIKAFREGCKDCGLRDLGYRGPRYTWWNNREEEVHIRCHLDRALA NDE" mobile_element 19668588..19670213 /note="source:INTACT700_F304_scaffold_7-int 5 1648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19670253..19670464) /note="source:INTACT666_F293_scaffold_9-int 1231 1437" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19670579..19672048 /locus_tag="TCM_014072" /note="dbxref CacaoGD:Thecc1EG014072" mRNA join(19670579..19671168,19671439..19672048) /locus_tag="TCM_014072" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.27 coverage" CDS 19670617..19670850 /locus_tag="TCM_014072" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21904.1" /translation="MPTIAPEAHSSSSQNAPFSALLQLPCCAPKRHRLEGLAKFVYES QNDIVLNLPNPNYKFFFFSPLPIFSLLPLSLAA" mobile_element 19671195..19671340 /note="source:scaffold_5_CACTA_0614 6102 6249" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19671315..19671404) /note="source:CACAO_M_E44210_F112_scaffold_5 10010 10090" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19671405..19671449) /note="source:CACAO_M_E69938_F9_scaffold_9 3532 3662" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19677766..19679546 /locus_tag="TCM_014073" /note="dbxref CacaoGD:Thecc1EG014073" mRNA join(19677766..19677849,19677929..19678198, 19678322..19678599,19678721..19679546) /locus_tag="TCM_014073" /product="NAC domain protein, IPR003441" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s02170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018621t1" /inference="similar to AA sequence:ricco:30138.m004055" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08966t00001" CDS join(19678012..19678198,19678322..19678599, 19678721..19679332) /locus_tag="TCM_014073" /note="dbxref ricco:30138.m004055; paralog of Thecc1EG018621t1" /codon_start=1 /product="NAC domain protein, IPR003441" /protein_id="EOY21905.1" /db_xref="TAIR:AT5G61430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I557" /translation="MANITVIGQEDDQMDLPPGFRFHPTDEELISHYLYKKVLDINFS ARAIGEVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATDSGYWKATGK DKEIYRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKYSVHNLPKTAKNEWVI CRVFQKSSGGKKTHISGLVRVGSFGNELGPSGLPPLMESSPYNGKSKPAVESAYVPCF SNPIDVQRNQQDTTDNFNNPLLPASSNPTDIFPRIPLSNAFYSNQAVPFPSNFQFPGS VLMQDQSILRALIKNHGSNMRQDFKTEREMVSVSQETGLTTDINTEISSVVSNLEMGK RSFDGQEAPSASAGPVDLDCFWHY" gene 19690290..19694815 /locus_tag="TCM_014076" /note="dbxref CacaoGD:Thecc1EG014076" mRNA join(19690290..19690578,19692507..19692702, 19693698..19693708,19693817..19694815) /locus_tag="TCM_014076" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog weak, intron is none, protein is utrpoor_complete" mobile_element 19692296..19693830 /note="source:CACAO_M_S_E32212_F17_scaffold_3 1 1535" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(19692618..19692702,19693698..19693708, 19693817..19694158) /locus_tag="TCM_014076" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21906.1" /translation="MKQFLDDGKDKRISYNFYIYHFTQFSLEDKIRKIEQQRQIRIGI YKSLVEKNKILVNEWIWRYKKERESLWRRVIIEKNGGEPTRLIPNTLCNRTTFTMWKN IVSPFTSSDPILDMVKVGIRMVAKTGEHILFWHNKQIGYLVLL" gene complement(19696712..19703278) /locus_tag="TCM_014078" /note="dbxref CacaoGD:Thecc1EG014078" mRNA complement(join(19696712..19697781,19697846..19697925, 19698064..19698275,19698973..19699202,19702176..19702236, 19702462..19702534,19702996..19703278)) /locus_tag="TCM_014078" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma13g21780.1" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(19697574..19697781,19697846..19697925, 19698064..19698275,19698973..19699202,19702176..19702236, 19702462..19702534,19702996..19703037)) /locus_tag="TCM_014078" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21907.1" /db_xref="Phytozome:Glyma13g21780.1" /translation="MTKLSSMKLTSVRGTDSSYTIHILNTLQGFLNQKKLVGRIVLSR IGTSLEPMTTAAKSRKTMPFIMQCLFMIMLVLKQCVMNENSSILWHRRLRHISIERIK RLVNDGVLNTLDFTNFDACVDCIKGKQTNKTKKESRNAKFLEINLISRSNQSHNLISE KNYYDIQTPTSSDKLIVIHNNPQIQTCVIQPIIEVPQAADDNLVDLEADYNVGAKNDP ETFSQTMSCKESELCYLMVQKPLNVNGSLTIECKWVFKTKKDSLGNIERYKTRLVAKG FTQNEGIDYSKTFSLYLRKIPFVPL" mobile_element 19703275..19703983 /note="source:CACAO_M_E58877_F5_scaffold_9 17827 18520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19708795..19708921) /note="source:INTACT666_F293_scaffold_9-int 14940 15063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19708815..19710087 /note="source:CACAO_M_E58877_F5_scaffold_9 8322 9604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19710408..19713168 /note="source:CACAO_M_E58877_F5_scaffold_9 9918 12678" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19710651..19711625) /locus_tag="TCM_014079" /note="dbxref CacaoGD:Thecc1EG014079" mRNA complement(join(19710651..19710767,19710860..19711625)) /locus_tag="TCM_014079" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035535t1" /inference="similar to AA sequence:Phytozome:Glyma06g26140.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6100t1_G2" CDS complement(join(19710749..19710767,19710860..19711476)) /locus_tag="TCM_014079" /note="paralog of Thecc1EG035535t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21908.1" /db_xref="Phytozome:Glyma06g26140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BJI5" /translation="MADALATLAAMFKVGTNVKIQPIMINLRECPAHCSSVEEEIDGK PWYHDIVHYLKFQQYPDQSSENDKKTIRRLAMNFFLDGNILYKRSRDQTLLRCVDSTE ARRIVEEVHEGVCGAHASGHKLARQVMRAGYYWLTLEKDCIDFARKCHKCQIYADRIH TPANSLHVLTSPWPFSMWGMDVIGLITPKASNGHRFILVAIDYFTKKDHHG" gene 19712540..19713004 /locus_tag="TCM_014080" /note="dbxref CacaoGD:Thecc1EG014080" mRNA 19712540..19713004 /locus_tag="TCM_014080" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc6397t1_G4" CDS 19712567..19712773 /locus_tag="TCM_014080" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21909.1" /translation="MKPSSFPEVTPKVHFAGFNLSWNFRNLLNNLSRLVAWSSVLRAF TIISSTYTSTSLCIISWKRVTIAR" mobile_element 19713764..19717387 /note="source:INTACT1427F_F390_scaffold_9-int 8009 11648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19717488..19719647 /note="source:INTACT1427F_F390_scaffold_9-int 11675 13854" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19721354..19722159 /note="source:INTACT58_F125_scaffold_5-int 15643 16331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19722683..19722803 /note="source:CACAO_M_E58877_F5_scaffold_9 19987 20112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19722847..19723084 /note="source:CACAO_M_E58877_F5_scaffold_9 20471 20708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19728796..19728973 /note="source:scaffold_8_CACTA_0859 16286 16472" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19733658..19734068 /note="source:CACAO_M_E5899_F5_scaffold_2 9387 9796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19734503..19734567) /note="source:CACAO_M_E5899_F5_scaffold_2 20735 20793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19735382..19735431 /note="source:CACAO_M_E5899_F5_scaffold_2 20734 20784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19736448..19736507 /note="source:scaffold_3_CACTA_0388 8029 8088" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19737276..19737655 /note="source:INTACT189_F49_scaffold_5-int 17852 18253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19738684..19739119 /note="source:INTACT189_F49_scaffold_5-int 1408 1845" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19743991..19745475 /locus_tag="TCM_014083" /note="dbxref CacaoGD:Thecc1EG014083" mRNA join(19743991..19744020,19744150..19744279, 19744383..19745475) /locus_tag="TCM_014083" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007981001" /inference="similar to AA sequence:Phytozome:GSVIVT01007981001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage" CDS 19744471..19745235 /locus_tag="TCM_014083" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21910.1" /db_xref="Phytozome:GSVIVT01007981001" /translation="MMGIDPATHKPVVAVLGSGNGEPKKLSNLTHTAQWESARLEAEA RLVRESSKLRQNYQHPAAGLPGPPPTQRVNKIASRLGSPRCLDILKAWQRVQLKSIVI ENNGGDHGSNLHSPTSTLNLQNIPASSTNCNIASFHSNDVNEGFATFQDMEFEAGQAW SMGACYAGNDDLIKGFSNFLSNNWESDHLVRYPNTDKDGNSGSSDGVSENDDENKNYL DDVFNLVDCGLRYTDSTLLHNNICMEHLELFIRPIC" mobile_element 19749571..19749974 /note="source:CACAO_M_S_E119911_F281_scaffold_10 4714 5105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19753306..19756560) /note="source:CACAO_M_E589_F323_scaffold_1 1 3237" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19756561..19756596 /note="source:CACAO_Mariner_E176_scaffold_6 7590 7621" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(19758449..19758940) /note="source:CACAO_M_E52278_F17_scaffold_7 1 503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19762572..19762775 /note="source:CACAO_M_E12297_F14_scaffold_3 6344 6547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19762774..19763757 /note="source:INTACT139F_F15_scaffold_2-int 7693 8675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19764031..19765795 /note="source:INTACT51F_F15_scaffold_1-int 9933 11259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19765796..19768550) /note="source:CACAO_M_E56927_F33_scaffold_8 1 2753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19768440..19768565 /note="source:CACAO_M_S_E52921_F60_scaffold_5 16417 16536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19770070..19770564 /note="source:CACAO_M_S_E32229_F172_scaffold_3 1 497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19770655..19773586 /note="source:CACAO_M_S_E32229_F172_scaffold_3 1 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19774457..19777382 /note="source:CACAO_M_E22680_F86_scaffold_3 1 2926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19783373..19785354) /note="source:CACAO_M_E48164_F87_scaffold_6 802 2798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19790017..19790927) /note="source:INTACT778_F53_scaffold_5-int 1 910" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19791467..>19792559 /locus_tag="TCM_014089" /note="dbxref CacaoGD:Thecc1EG014089" mRNA 19791467..>19792559 /locus_tag="TCM_014089" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_partial3" CDS 19792108..>19792557 /locus_tag="TCM_014089" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21911.1" /translation="MLHFVPSVFLMLKLLNICLSNVIMFGKFGLLGLMLGPFRGLPPG NMRDFLISWNTFFSECEHNPVWRMAFMAILWTTWIHRNNLVFNGKIWDSNLFFYVVKL RVGWWAKANWPLSNSSILEMVKDLIFIKAFPSNKKTKKSCDWNKPPFD" mobile_element complement(19792878..19802068) /note="source:INTACT74_F134_scaffold_5-int 1767 11008" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19800876..19817422 /locus_tag="TCM_014091" /note="dbxref CacaoGD:Thecc1EG014091" mRNA join(19800876..19801000,19805504..19805637, 19805729..19805858,19806353..19807352,19817281..19817422) /locus_tag="TCM_014091" /product="Myb domain 16-like protein" /inference="alignment:exonerate- protein:2:ricco:30138.m004053" /inference="similar to AA sequence:Phytozome:GSVIVT01007981001" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" mobile_element complement(19802078..19803609) /note="source:CACAO_M_E294_F134_scaffold_1 13926 15459" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(19805505..19805637,19805729..19805858, 19806353..19807277) /locus_tag="TCM_014091" /codon_start=1 /product="Myb domain 16-like protein" /protein_id="EOY21912.1" /db_xref="Phytozome:GSVIVT01007981001" /db_xref="TAIR:AT5G15310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9P0V4" /translation="MGRTPFCTAEGLKKGPWTAEEDQKLIAYIQKHGEGGWRSLPEKA GLQRCGKSCRLRWANYLRPGIKRGDFTSEDDQTIIELHAALGNRWAAIARHLPKRTDN EIKNYWNAHLKKRLATMSIDPVTQKPVGTTPGSSSRNSSTMGNAEPPMVHTESATKQE SEPTLQQPTSRSTSASALLLNKLASRVTTLQCVDPLRACQIMQSMSSKGTGDGGATAN NESAICRPTSNCQGNNISTALDTSAWLDIAETLTTPLNCLDLLETLPPELAECNASDD GGVSVDNYRIEDPVSDALSILDKNASAPASSFSSTSDRVLNNMASKLASLPCVDEIHD WQHNLPGPIQGDSDTTTTGDVAILDDISIDDTTYDMVGSPIFYNLNYLENEPEPSDPF YIP" mobile_element 19807644..19813019 /note="source:CACAO_M_E69946_F329_scaffold_9 1 5445" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19812605..19813068) /note="source:INTACT782_F329_scaffold_10-int 5000 5480" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19814672..19814718 /note="source:CACAO_M_E59650_F290_scaffold_9 2980 3394" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19814719..19815088) /note="source:CACAO_M_E13757_F15_scaffold_3 2725 3095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19815189..19815443) /note="source:CACAO_M_E59271_F15_scaffold_9 2270 2524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19816895..19817903 /note="source:CACAO_M_E4554_F15_scaffold_2 9699 10707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19818503..19818547 /note="source:CACAO_M_E22186_F143_scaffold_3 9950 9995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19818510..19818556) /note="source:scaffold_3_CACTA_0382 1852 1898" /mobile_element_type="transposon:TIR/CACTA" gene 19821556..19837020 /locus_tag="TCM_014092" /note="dbxref CacaoGD:Thecc1EG014092" mRNA join(19821556..19821878,19821992..19822061, 19822181..19822223,19822805..19822882,19823015..19823099, 19823219..19823301,19825771..19825828,19827081..19827191, 19827971..19828028,19828280..19828376,19828957..19828992, 19830762..19830898,19831096..19831166,19831270..19831323, 19832712..19832854,19833431..19833571,19834260..19834490, 19834692..19834751,19835203..19835463,19836216..19837020) /locus_tag="TCM_014092" /product="DNAJ heat shock N-terminal domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007980001" /inference="similar to AA sequence:Phytozome:GSVIVT01007980001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03652t00001_C2" CDS join(19821758..19821878,19821992..19822061, 19822181..19822223,19822805..19822882,19823015..19823099, 19823219..19823301,19825771..19825828,19827081..19827191, 19827971..19828028,19828280..19828376,19828957..19828992, 19830762..19830898,19831096..19831166,19831270..19831323, 19832712..19832854,19833431..19833571,19834260..19834490, 19834692..19834751,19835203..19835463,19836216..19836338) /locus_tag="TCM_014092" /codon_start=1 /product="DNAJ heat shock N-terminal domain-containing protein, putative" /protein_id="EOY21913.1" /db_xref="Phytozome:GSVIVT01007980001" /db_xref="TAIR:AT1G18700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ICC0" /translation="MAGDFAAKIKAYIVPLILFSLAMLCQLVLLPRSFPPSHYDVLGI KTYSSMEAVKEAYENLESKWNSGLEVPTTTEFIKIRYAYELLTNPIWKRNYDVFGIDE QLHVVEKVSQQYAEEKFSNIELPLLHVDASDIGDDAFNMITSNDFQSMFQDSKPWLLQ VYSSGSSHCAQFSNSWKRIAALLNGVANIGMVELSEIQIAAYLAEKKPTGQFFFRNGL PSLVTFPSGCKTSDCLIRFEGELSVDAVTDWFAMAVLNLPRIFYYSKESLGPRFLAKS SPHKVKVIFFSKTGERATPVMRQAAKDYWNYATFACVLWREEEFSVWWTTFGVESAPA IVFLKDPGLKPLVYHGSVNDSWFLDVLEQNKQQVLPQLRSLTSKELGCDARGYSRAGR DTLTWYCAILAGRQGLELDSMRETMRRVQETLSKSSESNAAIEDEQSITAAVAFKNKR LTFSWLDGEAQKNYCFFYLNTENGYETCGPRRVPTDVPQLFIIRYERNASEDAVKVEK AAKSIWEFHQHEVDPAAQLSVTYNGSAEVSQIIQWISNIIKDGDTRNLPFYRVKTPEL VPEDTEPFWSRGQQSILSKSMGTKQKMQGIIIRLYDYLGDPRIGPALLLGSLMSFGSI WLMRSQQNRPVQSSQPSQADNDDKPRPRERRRRRNVSNNDMPPSVTDLEPRDSYQMPL SDSD" mobile_element complement(19826889..19826951) /note="source:scaffold_3_CACTA_0382 12039 12107" /mobile_element_type="transposon:TIR/CACTA" gene 19838907..19841230 /locus_tag="TCM_014093" /note="dbxref CacaoGD:Thecc1EG014093" mRNA join(19838907..19839017,19839606..19839749, 19839885..19839994,19840684..19840826,19840925..19841112) /locus_tag="TCM_014093" /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031729t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007979001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03746t00001_C2; alternateUTRof:Thecc1EG014093t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8506t1" mRNA join(19838971..19839015,19839603..19839749, 19839885..19839994,19840684..19840826,19840925..19841101, 19841189..19841230) /locus_tag="TCM_014093" /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031729t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007979001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8506t1" CDS join(19839614..19839749,19839885..19839994, 19840684..19840826,19840925..19840967) /locus_tag="TCM_014093" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG031729t1" /codon_start=1 /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 1" /protein_id="EOY21914.1" /db_xref="Phytozome:GSVIVT01007979001" /db_xref="TAIR:AT1G26550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6ESK5" /translation="MGKDSKPKEAKGKGKQAGGGSDESASKGKGKAGKGDGLGTCTYV KARHILCEKQGKINEAYKKLEDGWLSNGDKVPPAEFAKIAQEYSECPSGKKGGDLGWF PRGKMAGPFQEVAFSTAVGATSAPFKSTHGYHIILSEGRKN" CDS join(19839614..19839749,19839885..19839994, 19840684..19840826,19840925..19840967) /locus_tag="TCM_014093" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG031729t1" /codon_start=1 /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 1" /protein_id="EOY21915.1" /db_xref="Phytozome:GSVIVT01007979001" /db_xref="TAIR:AT1G26550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6ESK5" /translation="MGKDSKPKEAKGKGKQAGGGSDESASKGKGKAGKGDGLGTCTYV KARHILCEKQGKINEAYKKLEDGWLSNGDKVPPAEFAKIAQEYSECPSGKKGGDLGWF PRGKMAGPFQEVAFSTAVGATSAPFKSTHGYHIILSEGRKN" gene complement(19842032..19846750) /locus_tag="TCM_014094" /note="dbxref CacaoGD:Thecc1EG014094" mRNA complement(join(19842032..19842419,19842648..19842972, 19843310..19845003,19846231..19846353,19846426..19846631)) /locus_tag="TCM_014094" /product="Galactoside 2-alpha-L-fucosyltransferase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g21090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011656t1" /inference="similar to AA sequence:frave:gene26047" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3971t1" mRNA complement(join(19843368..19845009,19846231..19846353, 19846426..19846678)) /locus_tag="TCM_014094" /product="Galactoside 2-alpha-L-fucosyltransferase, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g21090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011656t1" /inference="similar to AA sequence:frave:gene26047" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3971t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3971t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc81t7" CDS complement(join(19843547..19845003,19846231..19846353, 19846426..19846522)) /locus_tag="TCM_014094" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene26047; paralog of Thecc1EG011656t1" /codon_start=1 /product="Galactoside 2-alpha-L-fucosyltransferase, putative isoform 1" /protein_id="EOY21916.1" /db_xref="TAIR:AT2G03220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLW2" /translation="MKRFRRNPDENDPVTNLDPDGEGLFLRDQERKFSVVLQDPPSDG VLESGQDVRSFDVLESSKEERVLEVKPQKGPDNDYAPSVEARKDELLSGLLAVGHHER SCVSRYQSVLYRKELLHKPSPHLISRLRSYEALHKRCGPYTESYNKTLEMLKTKHHLE STDCNYLVWISFSGLGNRILTLASAFLYALLTNRVLLVDPGADMVDLFCEPFPEVSWF LPPDFPLKSQFNSFDQKSPHCYGRILKNSTFANSSRLISSSFVYLHLVHDYDDQDKLF FCDEDQTSLQKVPWLIMKTDNYFVPSLFLMPSFEQELSNLFPRKETVFHFLGRYLFHP TNPVWGLITRYYHAYLAKADERIGIQIRVFDTGTGPFQHVLDQIIACALKEDLLPKVS REKPIINQSQKSKAVLITSLSAGYFERVRDLYWEHPTVTGEVISVYQPSHEEYQQTEK RFHNRKAWAEMYLLSLTDVLVTSSWSTFGYVAQSLGGLKPWILYKPENQSAPDPACHR AMSMEPCFHAPPFYDCKAKRGIDTGALVPHVRHCEDMSWGLKLVDNESEL" CDS complement(join(19843547..19845009,19846231..19846353, 19846426..19846522)) /locus_tag="TCM_014094" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene26047; paralog of Thecc1EG011656t1" /codon_start=1 /product="Galactoside 2-alpha-L-fucosyltransferase, putative isoform 3" /protein_id="EOY21918.1" /db_xref="TAIR:AT2G03220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLW2" /translation="MKRFRRNPDENDPVTNLDPDGEGLFLRDQERKFSVVLQDPPSDG VLESGQDVRSFDVLESSKEERVLEVKPQKVVGPDNDYAPSVEARKDELLSGLLAVGHH ERSCVSRYQSVLYRKELLHKPSPHLISRLRSYEALHKRCGPYTESYNKTLEMLKTKHH LESTDCNYLVWISFSGLGNRILTLASAFLYALLTNRVLLVDPGADMVDLFCEPFPEVS WFLPPDFPLKSQFNSFDQKSPHCYGRILKNSTFANSSRLISSSFVYLHLVHDYDDQDK LFFCDEDQTSLQKVPWLIMKTDNYFVPSLFLMPSFEQELSNLFPRKETVFHFLGRYLF HPTNPVWGLITRYYHAYLAKADERIGIQIRVFDTGTGPFQHVLDQIIACALKEDLLPK VSREKPIINQSQKSKAVLITSLSAGYFERVRDLYWEHPTVTGEVISVYQPSHEEYQQT EKRFHNRKAWAEMYLLSLTDVLVTSSWSTFGYVAQSLGGLKPWILYKPENQSAPDPAC HRAMSMEPCFHAPPFYDCKAKRGIDTGALVPHVRHCEDMSWGLKLVDNESEL" mRNA complement(join(<19843932..19845779,19846231..19846750)) /locus_tag="TCM_014094" /product="Galactoside 2-alpha-L-fucosyltransferase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g21090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011656t1" /inference="similar to AA sequence:frave:gene26047" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc81t7; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc81t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3971t1" CDS complement(<19843934..19844770) /locus_tag="TCM_014094" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene26047; paralog of Thecc1EG011656t1" /codon_start=1 /product="Galactoside 2-alpha-L-fucosyltransferase isoform 2" /protein_id="EOY21917.1" /db_xref="TAIR:AT2G03220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLW2" /translation="MLKTKHHLESTDCNYLVWISFSGLGNRILTLASAFLYALLTNRV LLVDPGADMVDLFCEPFPEVSWFLPPDFPLKSQFNSFDQKSPHCYGRILKNSTFANSS RLISSSFVYLHLVHDYDDQDKLFFCDEDQTSLQKVPWLIMKTDNYFVPSLFLMPSFEQ ELSNLFPRKETVFHFLGRYLFHPTNPVWGLITRYYHAYLAKADERIGIQIRVFDTGTG PFQHVLDQIIACALKEDLLPKVSREKPIINQSQKSKAVLITSLSAGYFERVRDLYWEH PTV" mobile_element complement(19851916..19852027) /note="source:CACAO_M_E22186_F143_scaffold_3 9951 10044" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19854816..19860247 /locus_tag="TCM_014095" /note="dbxref CacaoGD:Thecc1EG014095" mRNA join(19854816..19855326,19856661..19856775, 19857044..19857184,19857270..19857383,19858304..19858382, 19858731..19858840,19858925..19858981,19859486..19859555, 19859645..19859754,19860046..19860247) /locus_tag="TCM_014095" /product="D-ribulose-5-phosphate-3-epimerase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07330.1" /inference="similar to AA sequence:Phytozome:Glyma05g00910.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03781t00001" CDS join(19855217..19855326,19856661..19856775, 19857044..19857184,19857270..19857383,19858304..19858382, 19858731..19858840,19858925..19858981,19859486..19859555, 19859645..19859694) /locus_tag="TCM_014095" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="D-ribulose-5-phosphate-3-epimerase isoform 1" /protein_id="EOY21919.1" /db_xref="Phytozome:Glyma05g00910.3" /db_xref="TAIR:AT5G61410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZTP5" /translation="MSTASSLCSSTQVNGFGGGLRLLRTHLSQPNTLTFTRRKIATVV KATARVDKFSKSDIIVSPSILSANFAKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITI GPIVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQ IKGLGAKAGVVLNPATPLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR MCAEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIRGIKTSKKP EAVAV" mRNA join(19855299..19855326,19856478..19856573, 19856661..19856775,19857044..19857184,19857270..19857383, 19858304..19858382,19858731..19858840,19858925..19858981, 19859486..19859555,19859645..19859754,19860046..19860075) /locus_tag="TCM_014095" /product="D-ribulose-5-phosphate-3-epimerase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07330.1" /inference="similar to AA sequence:Phytozome:Glyma05g00910.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc854t16; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc854t16; inference alignment:Newbler:10:TSA:cgbaB_g03781t00001" CDS join(19856572..19856573,19856661..19856775, 19857044..19857184,19857270..19857383,19858304..19858382, 19858731..19858840,19858925..19858981,19859486..19859555, 19859645..19859694) /locus_tag="TCM_014095" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="D-ribulose-5-phosphate-3-epimerase isoform 2" /protein_id="EOY21920.1" /db_xref="Phytozome:Glyma05g00910.3" /db_xref="TAIR:AT5G61410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZTP5" /translation="MRKIATVVKATARVDKFSKSDIIVSPSILSANFAKLGEQVKAVE VAGCDWIHVDVMDGRFVPNITIGPIVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG ADIVSVHCEQSSTIHLHRTLNQIKGLGAKAGVVLNPATPLSTIEYVLDVVDLVLIMSV NPGFGGQSFIESQVKKISDLRRMCAEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG SAVFGAKDYAEAIRGIKTSKKPEAVAV" mRNA join(19857063..19857184,19857270..19857383, 19858304..19858382,19858731..19858840,19858925..19858981, 19859486..19859585,19859645..19859754,19860095..19860225) /locus_tag="TCM_014095" /product="D-ribulose-5-phosphate-3-epimerase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07330.1" /inference="similar to AA sequence:Phytozome:Glyma05g00910.3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc873t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc854t16; inference alignment:Newbler:10:TSA:cgbaB_g03781t00001" CDS join(19857092..19857184,19857270..19857383, 19858304..19858382,19858731..19858840,19858925..19858981, 19859486..19859585,19859645..19859694) /locus_tag="TCM_014095" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="D-ribulose-5-phosphate-3-epimerase isoform 3" /protein_id="EOY21921.1" /db_xref="Phytozome:Glyma05g00910.3" /db_xref="TAIR:AT5G61410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZTP5" /translation="MDGRFVPNITIGPIVVDALRPVTDLPLDVHLMIVEPEQRVPDFI KAGADIVSVHCEQSSTIHLHRTLNQIKGLGAKAGVVLNPATPLSTIEYVLDVVDLVLI MSVNPGFGGQSFIESQVKKISDLRRMCAEKGVNPWIEVDGGVGPKNAYKVIEAGANAL VAGSAVFGAKDYAEGMDRELFLNFPIRGIKTSKKPEAVAV" mobile_element complement(19862015..19862807) /note="source:INTACT333_F20_scaffold_9-int 6187 6967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19862819..19865446 /note="source:INTACT567_F258_scaffold_9-int 5422 8102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19865502..19865775) /note="source:INTACT674_F296_scaffold_6-int 6910 7186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19867710..19867800 /note="source:scaffold_3_CACTA_0382 1851 1918" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19867742..19867817 /note="source:CACAO_M_E58819_F24_scaffold_9 15355 15426" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19868068..19868150) /note="source:CACAO_M_S_E16721_F36_scaffold_2 17787 17858" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19868151..19868241 /note="source:INTACT349_F203_scaffold_6-int 11301 11391" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19869159..19872024) /locus_tag="TCM_014097" /note="dbxref CacaoGD:Thecc1EG014097" mRNA complement(join(19869159..19869489,19869631..19869789, 19870692..19870775,19870922..19871100,19871183..19871233)) /locus_tag="TCM_014097" /product="RING/U-box superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30138.m004048" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000134t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007975001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3943t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3943t1; inference alignment:Newbler:10:TSA:cgbaP2_g12038t00001" mRNA complement(join(19869264..19869489,19869631..19869789, 19870692..19870775,19870922..19871100,19871732..19872024)) /locus_tag="TCM_014097" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m004048" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000134t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007975001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12038t00001; inference alignment:Newbler:10:TSA:cgbaP2_g12038t00001" CDS complement(join(19869367..19869489,19869631..19869789, 19870692..19870775,19870922..19871100,19871732..19871813)) /locus_tag="TCM_014097" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG000134t1" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY21922.1" /db_xref="Phytozome:GSVIVT01007975001" /db_xref="TAIR:AT1G74410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LBA0" /translation="MFLDAVDTVPRFIAGAISGALTGLFAFAGAFTGAVMGALAGKAS DSGILRGAGLGAIAGAILSVEVLEASRAYWCLEQSGSRGSSSMADFIEELLRGRLVEE GLTPAMLNAYNWQLSLADISYDEIHDIYGEVILRGLSGDSLKNLPCHVILDEIKATQG IYCTICLQDIKVGETARSLPKCQHTFHLACVDKWLIRRGSCPVCRRDV" CDS complement(join(19869367..19869489,19869631..19869789, 19870692..19870775,19870922..19871100,19871183..19871216)) /locus_tag="TCM_014097" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG000134t1" /codon_start=1 /product="RING/U-box superfamily protein isoform 2" /protein_id="EOY21923.1" /db_xref="Phytozome:GSVIVT01007975001" /db_xref="TAIR:AT1G74410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LBA0" /translation="MLSPIWLFFLLAGAFTGAVMGALAGKASDSGILRGAGLGAIAGA ILSVEVLEASRAYWCLEQSGSRGSSSMADFIEELLRGRLVEEGLTPAMLNAYNWQLSL ADISYDEIHDIYGEVILRGLSGDSLKNLPCHVILDEIKATQGIYCTICLQDIKVGETA RSLPKCQHTFHLACVDKWLIRRGSCPVCRRDV" gene complement(19872344..19875381) /locus_tag="TCM_014098" /note="dbxref CacaoGD:Thecc1EG014098" mRNA complement(19872344..19875381) /locus_tag="TCM_014098" /product="Pentatricopeptide repeat-containing protein, putative" /inference="alignment:exonerate-protein:2:frave:gene26051" /inference="similar to AA sequence:frave:gene26051" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3943t2" CDS complement(19873305..19875335) /locus_tag="TCM_014098" /note="dbxref frave:gene26051" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative" /protein_id="EOY21924.1" /db_xref="TAIR:AT5G61400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7MUK4" /translation="MLKLVPRNRTPFCYTKYPSSHSKIASHTSPSHHLNLTKAILNSQ TPHQALNLFNSNIKLINPSKNLEPYSAIIHVLTGAKLYTDARCLIKYLIKTLQSSLKP RRACHLIFNALSKLQTSKFTPNVFGSLIIAFSEMGLIEEALWVYRKIRTFPPMQACNS LLDGLVKMGRFDSMWDVYYDLLSRGFLPNVVTYGVLINGCCCQGDASKARELFHELLM KGIQPNVVIFTTVIKILCSEGQMLEAECMFRLIKDLYFLPNLYTFNVLMNGYCKMDNV ERAFEIYWMMIGDGLRPNVVTFGILIDGLCKMGALVVARNYFVCMVKYGVFPNVFVYN CLIDGYCKAGNVSEAVELSSEMEKLKILPDVFTYSILIKGLCSVGRVEEGSFLLQKMI KDGVLANSVTYNSLIDGYCRVGNMEKALEICSQMTEKGVEPNVITFSTLIDGYCKAGN MQAAMGFYSEMVIKSIVPDVVAYTALINGCCKNGNVKEALRLHKVMLGSGLTPNAFTL SCLVDGLCKDGIVFEAFSVFLEKTRAGISENGINEMDGLFCLPNHVMYMIYTTLIQAL CKDGQIFKANKIFSDIRCIDLIADVPSYIVMLEGHFQAKNMIDVMMLHADMIKIGIMP SITVNMIMARGYQEIGDLRLALMCSEDLAVQSLGVFNQGDHKELQHAVNEDK" mobile_element complement(19876714..19877590) /note="source:INTACT23_F11_scaffold_9-int 1 927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19878052..19878176) /note="source:scaffold_5_CACTA_0607 9952 10088" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19878538..19878618) /note="source:scaffold_5_CACTA_0607 9870 9953" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19879362..19879597) /note="source:scaffold_5_CACTA_0607 9597 9844" /mobile_element_type="transposon:TIR/CACTA" gene 19879930..19882853 /locus_tag="TCM_014099" /note="dbxref CacaoGD:Thecc1EG014099" mRNA join(19879930..19881973,19882550..19882853) /locus_tag="TCM_014099" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene26052" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000299t1" /inference="similar to AA sequence:frave:gene26052" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1619t1" CDS 19879975..19881630 /locus_tag="TCM_014099" /note="dbxref frave:gene26052; paralog of Thecc1EG000299t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY21925.1" /db_xref="TAIR:AT5G66520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK21" /translation="MLVEGVIPANLVNSRILQQSIISLLQKYRTIKKITQIHTQIIIN GFSQKNFILVNLISFYITSSNNLPHALKIFETIEKPSTTIWNRVIRGYSRTENPEKSV ELYNQMVATGAIPDGFTYSYLLSACARSGMLREGEQVHGKVLADGYCSNVFVRTNLVN LYAMVGGGDGIGYARRVFDEMGERNVVSWNSLLAGYIRYGDVHMARRVFDEMPERNVV SWTTMVAGFSRNGKCRQALSFFNQMRRARVQLDQVALLAALSACAELGDLESGKWIHS HIKETSRVRSQRLLVSLNNALIHMYASCGLIEEAYQVLKYMPERSTVSWTSMIMGLAK QGFAQEALVVYECMLSLGDREVKPDALTYLGVLCACSHAGYVEEGWHHFTQMTQNWGI EPRIEHYCCMIDLLSRAGFLDEAFNLIETMPVKPNDAVWGALLSGCRIHKNVDLASQV AQKLVAELDPDYAAGYLVLLSNVYAFAKRWQDVANVRQKMIDMGVKKPAGRSWVQIDG VVHDFMAGDSADKHAYSIYDMLWQVTRQAKQEGYEPDISEVLY" gene 19883182..19890746 /locus_tag="TCM_014100" /note="dbxref CacaoGD:Thecc1EG014100" mRNA join(19883182..19883533,19883621..19883778, 19884391..19884437,19884532..19884595,19886540..19887288, 19887701..19887891,19890017..19890746) /locus_tag="TCM_014100" /product="Polynucleotidyl transferase, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene26052" /inference="similar to AA sequence:ricco:30138.m004046" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01734t00001" mRNA join(19883192..19883533,19883621..19883778, 19886540..19887288,19887701..19888184) /locus_tag="TCM_014100" /product="Polynucleotidyl transferase, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene26052" /inference="similar to AA sequence:ricco:30138.m004046" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01734t00002; inference alignment:Newbler:10:TSA:cgbaB_g01734t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1097t5" CDS join(19883248..19883533,19883621..19883778, 19884391..19884437,19884532..19884595,19886540..19887288, 19887701..19887891,19890017..19890081) /locus_tag="TCM_014100" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m004046" /codon_start=1 /product="Polynucleotidyl transferase, putative isoform 1" /protein_id="EOY21926.1" /db_xref="TAIR:AT5G61390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLR0" /translation="MGPTTSGDRSEICFFDLETTVPKRRGQGYAILEFGAILVCSKRL LELESYSTLVRPDNLASISPSSERCNRITREDVASAPSFSEISDKVHDLLHGRVWAGH NIVRFDCLRIREAFEKIGRPAPEPKGIIDSLALLTKTFGRRAGNMKMATLANYFNIGE QRHRSLDDIRMNLEVLKYCATVLFLESSLPDILTADSVVSPRPTTRSISNSKSSPEGP SPNMQAPSSSIYESVPNLSPTDIENGEPHPIISLLTCHIGEEIPSLDASDSAQPDPFD MSRLSNEIKTEAYQLDVTMEEKPEPESPEVSLATAVAGGCSGYAGFLEPDEVSVTSIS ASLTPYYRGTDRIKLLHEDVVLQLFCSRLRVRFGISKKFVDQAGRPRLSIMVNVSPSL CRVLDACDAVAKKRFEDCGSSSEWRPVVNRKDGYVNYPTVRLHIPTVVSGDIVQYATE IHQKDSSGTVQKLVFSKFDAAELDNLFRTGIFVDAFFSLDPYDYQQSAASLIRKERQR KAKDHLLNKCN" CDS join(19883248..19883533,19883621..19883778, 19886540..19887288,19887701..19887935) /locus_tag="TCM_014100" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m004046" /codon_start=1 /product="Polynucleotidyl transferase, putative isoform 2" /protein_id="EOY21927.1" /db_xref="TAIR:AT5G07710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLR0" /translation="MGPTTSGDRSEICFFDLETTVPKRRGQGYAILEFGAILVCSKRL LELESYSTLVRPDNLASISPSSERCNRITREDVASAPSFSEISDKVHDLLHGRVWAGH NIVRFDCLRIREAFEKIGRPAPEPKGIIDSLALLTKTFGRRAGNMKESSLPDILTADS VVSPRPTTRSISNSKSSPEGPSPNMQAPSSSIYESVPNLSPTDIENGEPHPIISLLTC HIGEEIPSLDASDSAQPDPFDMSRLSNEIKTEAYQLDVTMEEKPEPESPEVSLATAVA GGCSGYAGFLEPDEVSVTSISASLTPYYRGTDRIKLLHEDVVLQLFCSRLRVRFGISK KFVDQAGRPRLSIMVNVSPSLCRVLDACDAVAKKRFEDCGSSSEWRPVVNRKDGYVNY PTVRLHIPTVVSGDIVQYATEIHQKDSSGTVQKLVFSKFDAAELDNLFRTGIFVDAFF SLDPYDYQQSAGIRLVAKNLIIHSY" gene 19890816..19897087 /locus_tag="TCM_014102" /note="dbxref CacaoGD:Thecc1EG014102" mRNA join(19890816..19891314,19891915..19892076, 19892190..19892323,19892625..19892792,19894628..19894712, 19895426..19896951) /locus_tag="TCM_014102" /product="Sensory transduction histidine kinase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07310.1" /inference="similar to AA sequence:ricco:30138.m004044" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3992t1" CDS join(19891155..19891314,19891915..19892076, 19892190..19892323,19892625..19892792,19894628..19894712, 19895426..19896384) /locus_tag="TCM_014102" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m004044" /codon_start=1 /product="Sensory transduction histidine kinase, putative isoform 1" /protein_id="EOY21928.1" /db_xref="TAIR:AT5G61380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLV6" /translation="MESKELNLNKECKVGGGAGEGFIDRSKVRILLCDNDPKSSEEVF SLLLKCSYQVTSVRSARQVIDALNAEGPEIDIILAEVDLPMTKGMKMLKYIMRDKDLR RIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNI LNYDFDLVASDPSDANTNSTTLLSDDTDDKSRKSTNPEIGVSTHQEDEYVAAVVEPPQ TETSECRPDVPGISDRRTGQFSSGPKKSELKIGESSAFFTYVKSNAVKTSTQVVTPHD ENAAQNKIIEENLQQSGQQVVNDVQVHENGEAWENCSQGDVFPSSSSIPDSLSLERSS TPPVSMEFSQQRNFKEEKLSQVLVPPRNEPQHDLSGLPTQTAYPYYMPGVVNQVMMQP SGQLFQNNLHDLQNHAASSVLPQYSHLQQCLSHPHVSGMASFPYYPVNMCVQPGQMPT GHSWPSFGNSSTSEVKLSKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRV RGQFVRKVNGVTVDLNGQPASADYDEDEEEEEQASRDSSPEDDTSGC" mRNA join(19891469..19891622,19891915..19892076, 19892190..19892323,19892625..19892792,19894628..19894712, 19895426..19897087) /locus_tag="TCM_014102" /product="CCT motif-containing response regulator protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07310.1" /inference="similar to AA sequence:ricco:30138.m004044" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3992t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3992t1" CDS join(19892007..19892076,19892190..19892323, 19892625..19892792,19894628..19894712,19895426..19896384) /locus_tag="TCM_014102" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m004044" /codon_start=1 /product="CCT motif-containing response regulator protein isoform 2" /protein_id="EOY21929.1" /db_xref="TAIR:AT5G61380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GT60" /translation="MTKGMKMLKYIMRDKDLRRIPVIMMSAQDEVSIVVKCLRLGAAD YLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYDFDLVASDPSDANTNSTTLLSDD TDDKSRKSTNPEIGVSTHQEDEYVAAVVEPPQTETSECRPDVPGISDRRTGQFSSGPK KSELKIGESSAFFTYVKSNAVKTSTQVVTPHDENAAQNKIIEENLQQSGQQVVNDVQV HENGEAWENCSQGDVFPSSSSIPDSLSLERSSTPPVSMEFSQQRNFKEEKLSQVLVPP RNEPQHDLSGLPTQTAYPYYMPGVVNQVMMQPSGQLFQNNLHDLQNHAASSVLPQYSH LQQCLSHPHVSGMASFPYYPVNMCVQPGQMPTGHSWPSFGNSSTSEVKLSKVDRREAA LIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVTVDLNGQPASADYDE DEEEEEQASRDSSPEDDTSGC" gene complement(19897163..19900631) /locus_tag="TCM_014104" /note="dbxref CacaoGD:Thecc1EG014104" mRNA complement(join(19897163..19897747,19897890..19898060, 19898607..19898795,19898887..19898945,19899691..19899806, 19899910..19900100,19900366..19900631)) /locus_tag="TCM_014104" /product="Vesicle transport v-SNARE family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400033895" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018655t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007964001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01370t00001" mRNA complement(join(19897391..19897747,19897890..19898060, 19898607..19898795,19898887..19898945,19899691..19899806, 19899910..>19900068)) /locus_tag="TCM_014104" /product="Vesicle transport v-SNARE family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400033895" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018655t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007964001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01370t00001; inference alignment:Newbler:10:TSA:cgbaL_g01370t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1117t2_C2" CDS complement(join(19897595..19897747,19897890..19898060, 19898607..19898795,19898887..19898945,19899691..19899806, 19899910..19900100,19900366..19900428)) /locus_tag="TCM_014104" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG018655t1" /codon_start=1 /product="Vesicle transport v-SNARE family protein isoform 1" /protein_id="EOY21930.1" /db_xref="Phytozome:GSVIVT01007964001" /db_xref="TAIR:AT1G26670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HXP4" /translation="MALSHHYVSVTLSECVMSNIDVIYGTAYGVHAGNSNGSPRAITT SQLKLQYCIFCNKTIENFFHCSILHLHFSDHSPVILPAPFRLARDWGEMSQVFEGYER QYCELSANLTRKCASASALDGEQKKQKLTEIKAGLDDADALIRKMDLEARSLQPSIKA TLLSKLREYRNDLNNLKSEVKRITSGNANQAARDELLGSGMADARMVSADQRGRLLMS TERLNQSTDRIKESRKAMLETEELGVSILQDLHQQRESLLHAHNTLHGVDDNISRSKK ILTNMSRRMSRNKWIIGSIIAALVLAILFILYFKLTH" CDS complement(join(19897595..19897747,19897890..19898060, 19898607..19898795,19898887..19898945,19899691..19899806, 19899910..>19900067)) /locus_tag="TCM_014104" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG018655t1" /codon_start=1 /product="Vesicle transport v-SNARE family protein isoform 2" /protein_id="EOY21931.1" /db_xref="Phytozome:GSVIVT01007964001" /db_xref="TAIR:AT1G26670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9EXK3" /translation="GNSNGSPRAITTSQLKLQYCIFCNKTIENFFHCSILHLHFSDHS PVILPAPFRLARDWGEMSQVFEGYERQYCELSANLTRKCASASALDGEQKKQKLTEIK AGLDDADALIRKMDLEARSLQPSIKATLLSKLREYRNDLNNLKSEVKRITSGNANQAA RDELLGSGMADARMVSADQRGRLLMSTERLNQSTDRIKESRKAMLETEELGVSILQDL HQQRESLLHAHNTLHGVDDNISRSKKILTNMSRRMSRNKWIIGSIIAALVLAILFILY FKLTH" mobile_element 19902869..19905378 /note="source:scaffold_5_CACTA_0585 7017 9515" /mobile_element_type="transposon:TIR/CACTA" gene complement(19905774..19906465) /locus_tag="TCM_014105" /note="dbxref CacaoGD:Thecc1EG014105" mRNA complement(19905774..19906465) /locus_tag="TCM_014105" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(19905970..19906200) /locus_tag="TCM_014105" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21932.1" /translation="MKEVFTKGYCPRKVSVVRDFPPYRERGVTPLNLERDVGKQQGEN DEDMENPRVIEDYSDYDLSMCSDQGNDDFSEA" mobile_element complement(19907353..19907474) /note="source:scaffold_3_CACTA_0382 1861 1928" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19907832..19907906 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18869 18943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19911834..19913225 /note="source:CACAO_M_S_E16721_F36_scaffold_2 17787 19180" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19913833..19914400 /note="source:CACAO_M_E22690_F33_scaffold_3 1 568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19914704..19916787 /note="source:CACAO_M_E22690_F33_scaffold_3 569 2652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19917369..19917426 /note="source:CACAO_M_S_E16721_F36_scaffold_2 20421 20591" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19917427..19917531 /note="source:scaffold_4_CACTA_0495 7315 7414" /mobile_element_type="transposon:TIR/CACTA" gene 19923664..19926855 /locus_tag="TCM_014106" /note="dbxref CacaoGD:Thecc1EG014106" mRNA join(19923664..19925212,19926069..19926855) /locus_tag="TCM_014106" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013742001" /inference="similar to AA sequence:Phytozome:GSVIVT01013742001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3955t2" CDS 19923745..19925208 /locus_tag="TCM_014106" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY21933.1" /db_xref="Phytozome:GSVIVT01013742001" /db_xref="TAIR:AT5G61370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLJ6" /translation="MMHFLFRPDRHRFLTQVITTQKPKNLFHSPHSTITTPPEFEELC KVVSSSMGGLDDLESSLNRFKLSLSPLLVTQVINSCENEAPTRRLLRFFLWSVKNLSS SLEDKDLNNVVRVFAKKKDHTAMGILVSDIRNRGRTMESQTFSVVAEMLVKLGREDEA LGIFKNLEKFKCPRDSFSLTAIVNALCAKGHARKAEGVVYHHKDTIAGVEPCIYRCLL YGWSVQENVKEARRVIKEMKSAGFELDLYCYNTFLRCLCGKNAKRNPSGLVPEALNVM MEMRSQRIAPTSVSYNILLSCLGRTRRVKESCQILELMKKAGCAPDWISYYLVARVLY LTGRFGKGNKIVDEMIEQGLTPDRKFYYDLIGVLCGVERVNFALELFERMKRSSLGGY GPVYDVLIPKLCRGGDFEKGRELWDEAVATGVSLSCSSDVLDPSITEVFKPTRKAEKV HLKGCTMAKSPVKNKQNTMKGKKYKKIKKKKKKSSSK" gene 19925544..19932614 /locus_tag="TCM_014107" /note="dbxref CacaoGD:Thecc1EG014107" mRNA join(19925544..19925842,19927589..19929291, 19932282..19932614) /locus_tag="TCM_014107" /product="Galactosyl transferase GMA12/MNN10 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s07020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004623t1" /inference="similar to AA sequence:ricco:30138.m004039" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06583t00001" CDS 19927817..19929199 /locus_tag="TCM_014107" /note="dbxref ricco:30138.m004039; paralog of Thecc1EG004623t1" /codon_start=1 /product="Galactosyl transferase GMA12/MNN10 family protein" /protein_id="EOY21934.1" /db_xref="TAIR:AT5G07720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9U0" /translation="MGQDNFTPQKRSSTGGGGGLPTTNNAAAGGGRNRGFPAMPRGRQ IHKTFNNIKITILCGFVTILVLRGTIGVGNLGSSEAEAVNQNLIEETNRILAEIRSDS DPTDPDEPPETEINPNITFTLGPKISDWDQQRKVWISQNPEFPNFVNGKARILLVTGS PPNPCDNAIGDHYLLKSIKNKIDYCRLHGIEIVYNMAHLDRELAGYWAKLPLIRRLML SHPEVEWIWWMDSDAFFTDMVFEIPLSKYDKYNLVVHGYPDLMFEQKSWIALNTGSFL FRNCQWSLDLLDAWAPMGPKGVIREEAGKVLTANLKGRPAFEADDQSALIYLLLSQKD QWMDKVFLENQYYLHGYWAGLVDRYEEMIEKYHPGLGDERWPFVTHFVGCKPCGSYGD YPVERCLRSMQRAFNFADNQVLKLYGFRHRGLLGPNIKRIRNETVTPLEIVDQLDIRR SVHGKSGSQS" gene complement(19930099..19930587) /locus_tag="TCM_014108" /note="dbxref CacaoGD:Thecc1EG014108" mRNA complement(19930099..19930587) /locus_tag="TCM_014108" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage" CDS complement(19930257..19930478) /locus_tag="TCM_014108" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21935.1" /translation="MNRVQNQIPQDTKRYTNSHLHCSQVAFSSQVLRHGQLIGVTSTF CSCESRNGCKLCYVRARGTQNYCLTYEIF" gene complement(19930631..19936323) /locus_tag="TCM_014109" /note="dbxref CacaoGD:Thecc1EG014109" mRNA complement(join(19930631..19931426,19931518..19935929, 19936102..19936160,19936255..19936323)) /locus_tag="TCM_014109" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30138.m004038" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006831t1" /inference="similar to AA sequence:ricco:30138.m004038" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1372t15" gene complement(19931039..19932143) /locus_tag="TCM_014110" /note="dbxref CacaoGD:Thecc1EG014110" mRNA complement(join(19931039..19931426,19931518..19932143)) /locus_tag="TCM_014110" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3974t2" CDS complement(join(19931334..19931426,19931518..19932129)) /locus_tag="TCM_014110" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21937.1" /translation="MCWGQTTCHLPCFLSLGAALSSSLFLLQATKMLENDRILEGFLF GWEKFHSINHKQPSKPKPNPQIKQQWSMVMIRDSLPHDDLSIFPPVDHENLPNQIQQQ HNPPSSSTLSPPRPDASEVIPASAGGGIGEWLGIGLEILRAKMVSIACYFGYKNGTMG RAFGSLGRVIGVAVAAVLWWLCRRRTCRKESVEQLKRSIKEKDEKIRGLLNQIAEMNQ LLVARHKALASNRTHL" CDS complement(19932729..19935386) /locus_tag="TCM_014109" /note="dbxref ricco:30138.m004038; paralog of Thecc1EG006831t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY21936.1" /db_xref="TAIR:AT5G61350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLJ8" /translation="MGGDHHRPARPLHVSSLSFLSIFLLLNHANFILAKHANQKPSAP APSLIVSSSPAAYRPPDNYLIDCGSSSETKLDDGRTFKSDSQTSSYLSTSEDVQASID SIPSSAFSNSTPSSMQDLCKTARIFPAHSTYTFFISKPGKHWVRLYFYPLPHPQYDLK TAVFTVHTDKFVLLHDFSVSDDNRVVFKEYLVNATERFSLIFKPKKNSYAFINAIEIV AIPDELLSDSASSVPQGKTVNGLLNYALEVSYRLNMGGPTLTPKNDTLSRTWLPDAPF NVFPQGAEAVTGSNIKYQPDKRMTPLVAPDLVYATAQRMTTEAYAQSMEPNFNLTWVM DIDASFSYLIRMHFCDIVSKSRNDLYFNVYINGLIGLSGLDLTTKAGGLATAYYTDFL LNASAITNGSIMVQVGPASNGGLPNAILNGLEVMKMSNIADSLDGFFAVDGSYKGGSS KLKVVAISGLAMAFFAMLLLGIVCVRWKRRPHDWQKRNSFSAWLLPIHGSHTSFLSSK SSSRKSSIFGSRKSKSTGHSSFYSNQGLGRFFSFNELQNATQNFDEKTVIGVGGFGKV FLGVLEDGTKIAIKRGNPGSEQGINEFQTEIQMLSKLRHRHLVSLIGFCDEESEMILV YEYMANGPLRDHLYGSNKPTLSWKQRLDICIGAARGLHYLHTGAAQGIIHRDVKTTNI LLDENFVAKVSDFGLSKAAPMEQGHVSTAVKGSFGYLDPEYFRSQQLTEKSDVYSFGV VLFEVLCARAVICPALPREQVSLAEWAMQWHRKGMIEKIVDPKIAESISEESLKKFVE AAEKCLAEYGVDRPSMGDVLWNLEYSLQLQDASSQIDVPEDRSNLIALEKPSDDDDPK ANPAAASDDSDMTVSSQLHFPHTGNIKGR" gene complement(19935629..19944677) /locus_tag="TCM_014111" /note="dbxref CacaoGD:Thecc1EG014111" mRNA complement(join(19935629..19935929,19936102..19936160, 19936255..19936323,19936458..19936537,19937129..19937201, 19938140..19938206,19938322..19938371,19939725..19939761, 19939878..19939939,19940048..19940086,19940820..19940997, 19941474..19941534,19941617..19941810,19941892..19941953, 19942153..19942239,19942351..19942435,19942625..19942707, 19943061..19943162,19944114..19944677)) /locus_tag="TCM_014111" /product="Zinc finger (C3HC4-type RING finger) family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m004038" /inference="similar to AA sequence:Phytozome:POPTR_0012s07000.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00560t00002" mRNA complement(join(19935635..19936160,19936255..19936323, 19936458..19936537,19937129..19937201,19938140..19938206, 19938322..19938371,19939725..19939761,19939878..19939939, 19940048..19940086,19940820..19940997,19941474..19941534, 19941617..19941810,19941892..19941953,19942153..19942239, 19942351..19942435,19942625..19942707,19943061..19943162, 19944114..19944528)) /locus_tag="TCM_014111" /product="Zinc finger (C3HC4-type RING finger) family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30138.m004038" /inference="similar to AA sequence:Phytozome:POPTR_0012s07000.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00560t00001; inference alignment:Newbler:10:TSA:cgbaL_g00560t00002" CDS complement(join(19935884..19935929,19936102..19936160, 19936255..19936323,19936458..19936537,19937129..19937201, 19938140..19938206,19938322..19938371,19939725..19939761, 19939878..19939939,19940048..19940086,19940820..19940997, 19941474..19941534,19941617..19941810,19941892..19941953, 19942153..19942239,19942351..19942435,19942625..19942707, 19943061..19943162,19944114..19944185)) /locus_tag="TCM_014111" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zinc finger (C3HC4-type RING finger) family protein isoform 1" /protein_id="EOY21938.1" /db_xref="Phytozome:POPTR_0012s07000.1" /db_xref="TAIR:AT1G18660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2X9" /translation="MSGETASSSGIVLEGIDDVEDYVWANEGVGSLPWDRYSHVYDYM ENGNRAFRDNRVEEAINNYTRANNIKPGDHVILGNRSAAYMRISQFLKSRSPTASECR PLNGLDMTTLAELALKDAERLMSLQNNAVRSYILKANALILLERYEMARDIILSGLQL DPFSDILRASFRSLERMPSSLLRIRGHELPERTDDFDCTLCLKLLYQPITTPCGHSFC RSCLFQTMDRSNKCPLCRTVLFISPRTCAISVTLNNIIQKTFPEEYAERKSEHDSLIN FGNDLIPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNHRMGMVIRDPATDSVAEF ACEVEITECEPLPDGRFVLEIESRRRFRILRSWDQDGYRMAEVEWIQDILPIDARDRE DLQESTNNAAAYARSWLSSAKEATHERRVLEALYNIEVMMPNTQDPERFSFWLATLSN RRPSERLELLRIRDTAERIRRGLIYLTAEAQGRSVQCQGGAGGFGFSPNRK" CDS complement(join(19936086..19936160,19936255..19936323, 19936458..19936537,19937129..19937201,19938140..19938206, 19938322..19938371,19939725..19939761,19939878..19939939, 19940048..19940086,19940820..19940997,19941474..19941534, 19941617..19941810,19941892..19941953,19942153..19942239, 19942351..19942435,19942625..19942707,19943061..19943162, 19944114..19944185)) /locus_tag="TCM_014111" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Zinc finger (C3HC4-type RING finger) family protein isoform 2" /protein_id="EOY21939.1" /db_xref="Phytozome:POPTR_0012s07000.1" /db_xref="TAIR:AT1G18660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2X9" /translation="MSGETASSSGIVLEGIDDVEDYVWANEGVGSLPWDRYSHVYDYM ENGNRAFRDNRVEEAINNYTRANNIKPGDHVILGNRSAAYMRISQFLKSRSPTASECR PLNGLDMTTLAELALKDAERLMSLQNNAVRSYILKANALILLERYEMARDIILSGLQL DPFSDILRASFRSLERMPSSLLRIRGHELPERTDDFDCTLCLKLLYQPITTPCGHSFC RSCLFQTMDRSNKCPLCRTVLFISPRTCAISVTLNNIIQKTFPEEYAERKSEHDSLIN FGNDLIPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNHRMGMVIRDPATDSVAEF ACEVEITECEPLPDGRFVLEIESRRRFRILRSWDQDGYRMAEVEWIQDILPIDARDRE DLQESTNNAAAYARSWLSSAKEATHERRVLEALYNIEVMMPNTQDPERFSFWLATLSN RRPSERLELLRIRDTAERIRRGLIYLTAEAQGRSVQWYMSL" mobile_element complement(19945612..19945739) /note="source:scaffold_1_CACTA_0016 1143 1277" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19946258..19946326) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3227 3296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19946263..19946356 /note="source:CACAO_M_E5326_F22_scaffold_2 21104 21183" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19948338..19948404 /note="source:INTACT701_F305_scaffold_10-int 12161 12229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19948372..19948426) /note="source:CACAO_M_E43428_F369_scaffold_5 1270 1326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19951174..19951269) /note="source:scaffold_1_CACTA_0016 6341 6434" /mobile_element_type="transposon:TIR/CACTA" gene 19954313..19955909 /locus_tag="TCM_014112" /note="dbxref CacaoGD:Thecc1EG014112" mRNA 19954313..19955909 /locus_tag="TCM_014112" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30138.m004036" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018662t1" /inference="similar to AA sequence:Phytozome:Glyma06g21170.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07176t00001" CDS 19954363..19955385 /locus_tag="TCM_014112" /note="paralog of Thecc1EG018662t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21940.1" /db_xref="Phytozome:Glyma06g21170.1" /db_xref="TAIR:AT5G61340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4D6" /translation="MLFSLSAMEDSPRIQMEKASKIIRRSIYTFLQNYHYLTATAALL AFPYSASILLSQLFVPSSPLLPTIHNRLRILFQAAGFPPSSEFFTVLSFKISQTISSS IFALPFTLSFLLIAKASIIQLLNHHKPNLPPSFSSVISLYKPLLATYICNFLLLLSAN ATAFSLLFFAFNFLEGFGFTSPSWLLFLSAAGAVLYSIILANALIICNLALVSSGMER SGGYMAILKACVLIRGRTSTALTLAVPVNLVLAAIEALFHYRVVRAFHTGDVTSFPMA SEGILIAFLYSTFVVLDTVVSCMFFKSCKTGSLVEQEGRHSYRIEIAEEDGNAYVKLK NIEQLP" gene complement(19956285..19969785) /locus_tag="TCM_014113" /note="dbxref CacaoGD:Thecc1EG014113" mRNA complement(join(19956285..19957546,19958691..19958770, 19958883..19958951,19959515..19959631,19959710..19959781, 19959952..19960046,19960920..19961001,19961086..19961136, 19961263..19961343,19963425..19963466,19963603..19963701, 19964146..19964217,19964902..19965031,19965201..19967389, 19967476..19967697,19967778..19968481,19969121..19969460)) /locus_tag="TCM_014113" /product="Actin-binding FH2 protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30138.m004035" /inference="similar to AA sequence:Phytozome:POPTR_0012s06980.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc992t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3984t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc981t4" mRNA complement(join(19956441..19957546,19958704..19958770, 19958883..19958951,19959515..19959631,19959710..19959781, 19959952..19960046,19960920..19961001,19961086..19961136, 19961263..19961343,19963425..19963466,19963603..19963701, 19964146..19964217,19964902..19965031,19965201..19967389, 19967476..19967697,19967778..19968481,19969121..19969785)) /locus_tag="TCM_014113" /product="Actin-binding FH2 protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m004035" /inference="similar to AA sequence:Phytozome:POPTR_0012s06980.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3984t2" CDS complement(join(19957395..19957546,19958704..19958770, 19958883..19958951,19959515..19959631,19959710..19959781, 19959952..19960046,19960920..19961001,19961086..19961136, 19961263..19961343,19963425..19963466,19963603..19963701, 19964146..19964217,19964902..19965031,19965201..19967389, 19967476..19967697,19967778..19968481,19969121..19969193)) /locus_tag="TCM_014113" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Actin-binding FH2 protein isoform 1" /protein_id="EOY21941.1" /db_xref="Phytozome:POPTR_0012s06980.1" /db_xref="TAIR:AT5G07740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLQ7" /translation="MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYKVYM GGIVAQLQDYFPDASFMVFNFREGERRSQISDILSQYDMTVMDYPRQYEGCPLLPLEM IHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEQKTLEMVY KQAPRELLQLLSPLNPQPSQLRYLQYISRRNLSSDWPPSDTPLFLDCLILRVLPLFEG RKGCTPVIRVYGQDPKTPANRSSKLLFSTSKTKKQVRHFPQEECALVKIDIHCRVQGD VVLECINLDEDLLREEMIFRVMFHTAFVRANILMLNRDEIDVLWDAKDQFPKDFRTEV LFMDPDAVVPRLTKVVASEDGNEIESASPEEFFEVEEIFSNAVDVLEGKVDDESPIVH NNKPDSREQKDVWREDVDPPTFQDCASDDGNHKQDVKVDSSVDAVKDIAVDDVNYKLN KMDSDLNAVKDIAVDDGDIKVSSVVFTVDVLRDKETKEVTEDVLGKLEEMEDKGNTED TVPLKNSESKMTQQRLKTDVSKPNSEKVLLVSKKQAGLGPKPASDSVLVKPKSKQLEP QGPPARQAKANAISRWIPPNKGSYTNSMHVSYPPSRYNSAPPVLSSSVALKESNSNAN LKGSTGAVISKDVSSEQRSQKADPTKPSDSPKEIPTTPIVPTSPPGLQQTESVPPSPP PQPSSSLPPPLRSSFLVSPSFQENATTIPPPPPPPPVIGNAVSRMSLAAPPPPPPPPP PYRAANVLSIGMVSQSALAAPPPPPPPPPFSKKQTAAPVLPPPPPWNSGYSSASPTII CSPPPPPPPPPPPPPVSALGTSKLGNVPPPPPPPPSPIQGAMASSSIHGVPLPLHPTP PLRGAPSPPAPPPPPPLLTRHGVAPPPPPPPPQYRVLPPAPPPPPRHGASQPPSPPPP MSGGPPPPKSGAPPPPPPPVRGVPPLPPPFGAPPPPPPPARGTPAPPPPPLRGAPPPP VGGAPPPPPPPGGRAPCPPPPPGTPGGAPPPPPPLGARAGDMRGRGRGLSRPAAATAP RRSSLKPLHWSKVTRAIQGSLWEELQRHGEPQIAPEFDVSELETLFSAVVPKPADSGG KSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLSDMMAAVLAMDDTVLDVDQV ENLIKFCPTKEEMELLKGYTGDKENLGKCEQYFLELMKVPRVESKLRVFSFKIQFGSQ ISEFKKSLNTVNSACDEVRNSIKLKEIMKKILYLGNTLNQGTARGSAIGFKLDSLLKL TDTRASNSKMTLMHYLCKVLAAKTPALLDVHLEFVSLEAATKIQLKSLAEEMQAIIKG LEKVKQELDASQNDGPVSEVFRKTLKEFISVAEMEVESVKTLYSVVGRNADALALYFG EDPARCPFEQVTATLLNFVRLFRKAHEENVKQAELEKKKADKEAEMEKAKGINLTKKG AK" CDS complement(join(19957498..19957546,19958691..19958770, 19958883..19958951,19959515..19959631,19959710..19959781, 19959952..19960046,19960920..19961001,19961086..19961136, 19961263..19961343,19963425..19963466,19963603..19963701, 19964146..19964217,19964902..19965031,19965201..19967389, 19967476..19967697,19967778..19968481,19969121..19969193)) /locus_tag="TCM_014113" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Actin-binding FH2 protein isoform 2" /protein_id="EOY21942.1" /db_xref="Phytozome:POPTR_0012s06980.2" /db_xref="TAIR:AT5G07740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLQ7" /translation="MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYKVYM GGIVAQLQDYFPDASFMVFNFREGERRSQISDILSQYDMTVMDYPRQYEGCPLLPLEM IHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEQKTLEMVY KQAPRELLQLLSPLNPQPSQLRYLQYISRRNLSSDWPPSDTPLFLDCLILRVLPLFEG RKGCTPVIRVYGQDPKTPANRSSKLLFSTSKTKKQVRHFPQEECALVKIDIHCRVQGD VVLECINLDEDLLREEMIFRVMFHTAFVRANILMLNRDEIDVLWDAKDQFPKDFRTEV LFMDPDAVVPRLTKVVASEDGNEIESASPEEFFEVEEIFSNAVDVLEGKVDDESPIVH NNKPDSREQKDVWREDVDPPTFQDCASDDGNHKQDVKVDSSVDAVKDIAVDDVNYKLN KMDSDLNAVKDIAVDDGDIKVSSVVFTVDVLRDKETKEVTEDVLGKLEEMEDKGNTED TVPLKNSESKMTQQRLKTDVSKPNSEKVLLVSKKQAGLGPKPASDSVLVKPKSKQLEP QGPPARQAKANAISRWIPPNKGSYTNSMHVSYPPSRYNSAPPVLSSSVALKESNSNAN LKGSTGAVISKDVSSEQRSQKADPTKPSDSPKEIPTTPIVPTSPPGLQQTESVPPSPP PQPSSSLPPPLRSSFLVSPSFQENATTIPPPPPPPPVIGNAVSRMSLAAPPPPPPPPP PYRAANVLSIGMVSQSALAAPPPPPPPPPFSKKQTAAPVLPPPPPWNSGYSSASPTII CSPPPPPPPPPPPPPVSALGTSKLGNVPPPPPPPPSPIQGAMASSSIHGVPLPLHPTP PLRGAPSPPAPPPPPPLLTRHGVAPPPPPPPPQYRVLPPAPPPPPRHGASQPPSPPPP MSGGPPPPKSGAPPPPPPPVRGVPPLPPPFGAPPPPPPPARGTPAPPPPPLRGAPPPP VGGAPPPPPPPGGRAPCPPPPPGTPGGAPPPPPPLGARAGDMRGRGRGLSRPAAATAP RRSSLKPLHWSKVTRAIQGSLWEELQRHGEPQIAPEFDVSELETLFSAVVPKPADSGG KSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLSDMMAAVLAMDDTVLDVDQV ENLIKFCPTKEEMELLKGYTGDKENLGKCEQYFLELMKVPRVESKLRVFSFKIQFGSQ ISEFKKSLNTVNSACDEVRNSIKLKEIMKKILYLGNTLNQGTARGSAIGFKLDSLLKL TDTRASNSKMTLMHYLCKVLAAKTPALLDVHLEFVSLEAATKIQLKSLAEEMQAIIKG LEKVKQELDASQNDGPVSEVFRKTLKEFISVAEMEVESVKTLYSVVGRNADALALYFG EDPARCPFEQGRLWIYCNTIKLCEVVSKST" mRNA complement(join(19960764..19961001,19961086..19961343, 19963425..19963466,19963603..19963701,19964146..19964217, 19964902..19965031,19965201..19967389,19967476..19967697, 19967778..19968481,19969121..19969785)) /locus_tag="TCM_014113" /product="Actin-binding FH2 protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30138.m004035" /inference="similar to AA sequence:Phytozome:POPTR_0015s07220.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:PASA:2:TSA:puevd3b013642t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3984t2" mRNA complement(join(19961109..19961136,19961263..19961343, 19963425..19963466,19963603..19963701,19964146..19964217, 19964902..19967389,19967476..19967697,19967778..19968481, 19969121..19969460)) /locus_tag="TCM_014113" /product="Actin-binding FH2 protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30138.m004035" /inference="similar to AA sequence:frave:gene26062" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1290t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3984t2" CDS complement(join(19961233..19961343,19963425..19963466, 19963603..19963701,19964146..19964217,19964902..19965031, 19965201..19967389,19967476..19967697,19967778..19968481, 19969121..19969193)) /locus_tag="TCM_014113" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Actin-binding FH2 protein isoform 3" /protein_id="EOY21943.1" /db_xref="Phytozome:POPTR_0015s07220.1" /db_xref="TAIR:AT5G07740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLQ7" /translation="MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYKVYM GGIVAQLQDYFPDASFMVFNFREGERRSQISDILSQYDMTVMDYPRQYEGCPLLPLEM IHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEQKTLEMVY KQAPRELLQLLSPLNPQPSQLRYLQYISRRNLSSDWPPSDTPLFLDCLILRVLPLFEG RKGCTPVIRVYGQDPKTPANRSSKLLFSTSKTKKQVRHFPQEECALVKIDIHCRVQGD VVLECINLDEDLLREEMIFRVMFHTAFVRANILMLNRDEIDVLWDAKDQFPKDFRTEV LFMDPDAVVPRLTKVVASEDGNEIESASPEEFFEVEEIFSNAVDVLEGKVDDESPIVH NNKPDSREQKDVWREDVDPPTFQDCASDDGNHKQDVKVDSSVDAVKDIAVDDVNYKLN KMDSDLNAVKDIAVDDGDIKVSSVVFTVDVLRDKETKEVTEDVLGKLEEMEDKGNTED TVPLKNSESKMTQQRLKTDVSKPNSEKVLLVSKKQAGLGPKPASDSVLVKPKSKQLEP QGPPARQAKANAISRWIPPNKGSYTNSMHVSYPPSRYNSAPPVLSSSVALKESNSNAN LKGSTGAVISKDVSSEQRSQKADPTKPSDSPKEIPTTPIVPTSPPGLQQTESVPPSPP PQPSSSLPPPLRSSFLVSPSFQENATTIPPPPPPPPVIGNAVSRMSLAAPPPPPPPPP PYRAANVLSIGMVSQSALAAPPPPPPPPPFSKKQTAAPVLPPPPPWNSGYSSASPTII CSPPPPPPPPPPPPPVSALGTSKLGNVPPPPPPPPSPIQGAMASSSIHGVPLPLHPTP PLRGAPSPPAPPPPPPLLTRHGVAPPPPPPPPQYRVLPPAPPPPPRHGASQPPSPPPP MSGGPPPPKSGAPPPPPPPVRGVPPLPPPFGAPPPPPPPARGTPAPPPPPLRGAPPPP VGGAPPPPPPPGGRAPCPPPPPGTPGGAPPPPPPLGARAGDMRGRGRGLSRPAAATAP RRSSLKPLHWSKVTRAIQGSLWEELQRHGEPQIAPEFDVSELETLFSAVVPKPADSGG KSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLSDMMAAVLAMDDTVLDVDQV ENLIKFCPTKEEMELLKGYTGDKENLGKCEQYFLELMKVPRVESKLRVFSFKIQFGSQ VWRYLHSLI" CDS complement(join(19965179..19967389,19967476..19967697, 19967778..19968481,19969121..19969193)) /locus_tag="TCM_014113" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene26062" /codon_start=1 /product="Actin-binding FH2 protein isoform 4" /protein_id="EOY21944.1" /db_xref="TAIR:AT5G07740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLQ7" /translation="MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYKVYM GGIVAQLQDYFPDASFMVFNFREGERRSQISDILSQYDMTVMDYPRQYEGCPLLPLEM IHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEQKTLEMVY KQAPRELLQLLSPLNPQPSQLRYLQYISRRNLSSDWPPSDTPLFLDCLILRVLPLFEG RKGCTPVIRVYGQDPKTPANRSSKLLFSTSKTKKQVRHFPQEECALVKIDIHCRVQGD VVLECINLDEDLLREEMIFRVMFHTAFVRANILMLNRDEIDVLWDAKDQFPKDFRTEV LFMDPDAVVPRLTKVVASEDGNEIESASPEEFFEVEEIFSNAVDVLEGKVDDESPIVH NNKPDSREQKDVWREDVDPPTFQDCASDDGNHKQDVKVDSSVDAVKDIAVDDVNYKLN KMDSDLNAVKDIAVDDGDIKVSSVVFTVDVLRDKETKEVTEDVLGKLEEMEDKGNTED TVPLKNSESKMTQQRLKTDVSKPNSEKVLLVSKKQAGLGPKPASDSVLVKPKSKQLEP QGPPARQAKANAISRWIPPNKGSYTNSMHVSYPPSRYNSAPPVLSSSVALKESNSNAN LKGSTGAVISKDVSSEQRSQKADPTKPSDSPKEIPTTPIVPTSPPGLQQTESVPPSPP PQPSSSLPPPLRSSFLVSPSFQENATTIPPPPPPPPVIGNAVSRMSLAAPPPPPPPPP PYRAANVLSIGMVSQSALAAPPPPPPPPPFSKKQTAAPVLPPPPPWNSGYSSASPTII CSPPPPPPPPPPPPPVSALGTSKLGNVPPPPPPPPSPIQGAMASSSIHGVPLPLHPTP PLRGAPSPPAPPPPPPLLTRHGVAPPPPPPPPQYRVLPPAPPPPPRHGASQPPSPPPP MSGGPPPPKSGAPPPPPPPVRGVPPLPPPFGAPPPPPPPARGTPAPPPPPLRGAPPPP VGGAPPPPPPPGGRAPCPPPPPGTPGGAPPPPPPLGARAGDMRGRGRGLSRPAAATAP RRSSLKPLHWSKVTRAIQGSLWEELQRHGEPQMYFIFFY" mobile_element 19972567..19975069 /note="source:scaffold_3_CACTA_0388 8451 10978" /mobile_element_type="transposon:TIR/CACTA" gene complement(19975611..19977408) /locus_tag="TCM_014115" /note="dbxref CacaoGD:Thecc1EG014115" mRNA complement(join(19975611..19976320,19976399..19976814, 19976926..19977408)) /locus_tag="TCM_014115" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010873t1" /inference="similar to AA sequence:Phytozome:Glyma14g16190.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.64 coverage" CDS complement(join(19975883..19976320,19976399..19976814, 19976926..19977352)) /locus_tag="TCM_014115" /note="paralog of Thecc1EG010873t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21945.1" /db_xref="Phytozome:Glyma14g16190.1" /translation="MKELEEVVRHFQDLYKENEVLEIVNLGCHFNKLFEESVDFLERP FEEDEIWETIQGHDGNKAPGPNGYNLNFFKKQWPIIKRNVMRFMDEFFSNGKLGHSVN TSFIALIPKVPNPTSLSDSRPISLVNSLYKILANRLKTVIGMVLKLDFEKAFDSISWN FLDHVMGFMGFGVKWRCWIKECISTAKISILVNGSPSRQFGMERGFRQGCPLSPLLFN IAGEAFSAMLCKVESIEICKGVMIGRNGLSLTHLQYADDTIIFCDADLESLLIMKRIL KCYQSAEKIMCKVGYLPTTYLRLPLGAKHNSTRFWDPILEKVKRKLAGWKTKMLSFEG RITLLKSVLTSMPVFFMSLFQVPHKVKNELEKLQRRFLWGGDDQKRKIHLVKWDKVCN YKDCRGIDITDIEVKNHALLNKWIWRYGMETDNL" mobile_element 19979829..19979934 /note="source:scaffold_4_CACTA_0506 6526 6632" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19980189..19980289) /note="source:scaffold_10_CACTA_0127 10870 10969" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19982687..19982746) /note="source:INTACT433_F212_scaffold_1-int 3074 3136" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(19984529..19992610) /locus_tag="TCM_014116" /note="dbxref CacaoGD:Thecc1EG014116" mRNA complement(join(19984529..19985338,19985808..19985940, 19986827..19987369,19987451..19987538,19988090..19988187, 19989345..19989572,19990144..19990461,19990794..19991078, 19991898..19992610)) /locus_tag="TCM_014116" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g00810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018668t1" /inference="similar to AA sequence:ricco:30138.m004033" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g3990t2" CDS complement(join(19985319..19985338,19985808..19985940, 19986827..19987369,19987451..19987538,19988090..19988187, 19989345..19989572,19990144..19990461,19990794..19991078, 19991898..19992335)) /locus_tag="TCM_014116" /note="dbxref ricco:30138.m004033; paralog of Thecc1EG018668t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY21946.1" /db_xref="TAIR:AT1G18670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ICB6" /translation="MGCVSSKQAVSVTPAFDHSGALRENAGAGSVGTNSGRSRVGFSE LEKKRSSGGGGSKKKKKNSTSGGVSDLGSGCGGLGLSGTELGESGRASSRSDSLSLRL GNLQKYIEGEHVAAGWPAWLSAVAGEAIHGWVPLKADSFEKLEKIGQGTYSTVFRARD LETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGIITSRMSCSIYLV FEYMEHDITGLLSCPDIKFSESQIKCYVKQLLSGLDHCHSRGIMHRDIKGSNLLVNNE GILKMADFGLANFCASGHRQPLTSRVVTLWYRPPELLLGSTDYTAAVDLWSVGCVFAE LLLGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKSRLPHATLFKPQQPYDSCLRETFK DLPATAVNLIETLLSVEPYKRGTASSALASEYFTTKPYACDPSSLPVYPPSKEIDAKH REEAKRKKISGRVRGSETRKPIRKPHGISKLAPVEDAAAAQTRGSQKINGNHVHNSKQ RNATISDGVPNPSTDGLEEAAHVKHASQGDIPYSGPLQVSTSSGFAWAKRQKDDASIR SHSRSISRGHIYNSLEPSAQLNARNNFDSKRHENGDVIYGGRTDSRGHDSYEAAKRAM QKQWSQFERPDSFDASDGGYHSQELSLALYQREEMAAKRNNLDYQDEGDKVEFSGPLL SQSHRVDELLERHERQIRQAIRKSWFQRGKKHGK" gene complement(19992935..20004877) /locus_tag="TCM_014117" /note="dbxref CacaoGD:Thecc1EG014117" mRNA complement(join(19992935..19992989,20000077..20000490, 20003499..20003618,20004115..20004395,20004826..20004877)) /locus_tag="TCM_014117" /product="HNH endonuclease domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g00790.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007955001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00133t00004" mobile_element 19998969..19999265 /note="source:scaffold_2_CACTA_0256 18057 18347" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(19999835..20000490,20001679..20001825, 20003499..20003618,20004115..>20004230)) /locus_tag="TCM_014117" /product="HNH endonuclease domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g00790.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007955001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc893t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc893t1; inference alignment:Newbler:10:TSA:cgbaP1_g00133t00004" CDS complement(join(20000312..20000490,20003499..20003618, 20004115..20004358)) /locus_tag="TCM_014117" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="HNH endonuclease domain-containing protein isoform 1" /protein_id="EOY21947.1" /db_xref="Phytozome:GSVIVT01007955001" /db_xref="TAIR:AT1G18680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9T9" /translation="MSSSSSSSSPRRSRISNGEDERPRFFDSKAKSKCWANAETVPGR HPERWRKDAAGNIVCKRFCNCKGCLCFEYDHIVPFSRGGESTAENCQILQTRVNRLKS NKEVDTTRLQGYSCAVQFTDKELDIIEMAVYGDVSRPGNQCRCRTLAEMLGKYKSKDD LAACKLPYDKESLQQTKATY" CDS complement(join(20000312..20000490,20001679..20001825, 20003499..20003618,20004115..>20004229)) /locus_tag="TCM_014117" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="HNH endonuclease domain-containing protein isoform 2" /protein_id="EOY21948.1" /db_xref="Phytozome:GSVIVT01007955001" /db_xref="TAIR:AT1G18680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9T9" /translation="RHPERWRKDAAGNIVCKRFCNCKGCLCFEYDHIVPFSRGGESTA ENCQILQTRVNRLKSNKEVDTTRLQGYSCAVQFTAHGASGITGIFLSAASSTTCLLIC STTFLSLPQKPPLYKSEKRKCGLGVDKELDIIEMAVYGDVSRPGNQCRCRTLAEMLGK YKSKDDLAACKLPYDKESLQQTKATY" mobile_element complement(20001720..20001849) /note="source:CACAO_M_E4304_F20_scaffold_2 12475 12599" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20004763..20007800) /locus_tag="TCM_014118" /note="dbxref CacaoGD:Thecc1EG014118" mRNA complement(join(20004763..20005515,20006207..20006281, 20006361..20006417,20006536..20006658,20007275..20007800)) /locus_tag="TCM_014118" /product="Eukaryotic elongation factor 5A-1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g06600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011621t1" /inference="similar to AA sequence:frave:gene04668" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8586t1" mRNA complement(join(20005078..20005271,20006202..20006281, 20006361..20006417,20006536..20006658,20007275..20007552)) /locus_tag="TCM_014118" /product="Eukaryotic translation initiation factor 5A-1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g06600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011621t3" /inference="similar to AA sequence:frave:gene04668" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6649t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8586t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc680t10" CDS complement(join(20005100..20005271,20006202..20006281, 20006361..20006417,20006536..20006658,20007275..20007397)) /locus_tag="TCM_014118" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene04668; paralog of Thecc1EG011621t3" /codon_start=1 /product="Eukaryotic translation initiation factor 5A-1 isoform 2" /protein_id="EOY21950.1" /db_xref="TAIR:AT1G13950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI91" /translation="MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVE VSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFV SLLTESGGTKDDLRLPTDENLLTQVKPLRVSCCAMVYCYSLQAPFYWKNQTDAVFISL DVLPYNSIFYNLGVLISFWEQFTK" CDS complement(join(20005414..20005515,20006207..20006281, 20006361..20006417,20006536..20006658,20007275..20007397)) /locus_tag="TCM_014118" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene04668; paralog of Thecc1EG011621t1" /codon_start=1 /product="Eukaryotic elongation factor 5A-1 isoform 1" /protein_id="EOY21949.1" /db_xref="TAIR:AT1G13950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI91" /translation="MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVE VSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFV SLLTESGGTKDDLRLPTDENLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK" gene complement(20008822..20010186) /locus_tag="TCM_014119" /note="dbxref CacaoGD:Thecc1EG014119" mRNA complement(join(20008822..20009389,20009694..20009748, 20010056..20010186)) /locus_tag="TCM_014119" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007953001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011610t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400042492" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc279t3_C2" CDS complement(join(20009010..20009389,20009694..20009748, 20010056..20010142)) /locus_tag="TCM_014119" /note="paralog of Thecc1EG011610t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21951.1" /db_xref="Phytozome:PGSC0003DMP400042492" /db_xref="TAIR:AT2G03350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HXM8" /translation="MEKALTKAGSFWISKKAKAELSNITEDLSSLSNTVEEKAKWIFN KLKGKPVKALPDLLREHNLPPGLFPRNITCYEFDESKSKLIVYFPSPCEVRFKDASVV RYATRVKATLSRGKLSGIEGMKTKVLVWVKVTSVNVESSKSDKVWFMAGVKKSRAKDA YQMPGDAVKVEEF" mobile_element complement(20010617..20010698) /note="source:CACAO_Mariner_E176_scaffold_6 2920 3001" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 20011811..20013975 /note="source:scaffold_3_CACTA_0383 3287 5463" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20016240..20016367 /note="source:scaffold_1_CACTA_0008 14051 14174" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20016408..20016706 /note="source:CACAO_on_E33_A_scaffold_3 6969 7250" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(20016449..20017039) /note="source:CACAO_MITE_S248_scaffold_10 6 597" /mobile_element_type="transposon:TIR/MITE" gene 20016925..20020372 /locus_tag="TCM_014120" /note="dbxref CacaoGD:Thecc1EG014120" mRNA join(20016925..20017479,20018016..20018163, 20018422..20020372) /locus_tag="TCM_014120" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07260.1" /inference="similar to AA sequence:ricco:30138.m004029" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1109t1" mobile_element complement(20016930..20017058) /note="source:CACAO_PIF_E31_scaffold_2 4060 4187" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(20017445..20017479,20018016..20018163, 20018422..20020086) /locus_tag="TCM_014120" /note="dbxref ricco:30138.m004029" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21952.1" /translation="MFPGNSVPGNSRSSSVFSGLQFFAWKGNMGEIDTKPIEPVQVAL SLFGENDQSKRRSSSSASGVEKEKDIEDLEKELANYRLQLEAKDFAYMQTLLQLEHYK KTTEEFSVLLKNSELERDRYIEECNEVKNQIDELESKMKGMVDQLSETAKVREPLSHV LNELKVTQAALLNMETELAAAKDSELKAMTQAELMETSANMEKEKSEELLDHILELHD SVLISKLAATEAEEEKCRIASEKDAEIESLKATAFQAQEQVEDLRKQLETIEELENQL LSKSAYIDSLQAELKQVTNILGSMENATSDGGIDLNQIKQDLEFKERKISDQAFYIEA LETELNRLKLELKNANEEVRSLNCNVEALKSDLEKLEIEMDEVGEKDNDSQVELAMLK AELHKGRSKIAAAEAAEARDLSVKSGLHLAVQQLAVEAEEAKKEYHKLKQEVEAEGCD NSTLNHEAEKSPQGALVSHIDDQRDKSVNHITISIEEYNILIQKADKTDQLSNSKSLA EDSKQLSTESENKNEVEFLKKELEVAMVKIGLFRNRAEQAATRAEAAEKAKATLEDQL RMWQEQKQRRKAALAALREESAPKQFSPPTIEKLPTKNQPLGKVLNIKF" gene complement(20021384..20025278) /locus_tag="TCM_014121" /note="dbxref CacaoGD:Thecc1EG014121" mRNA complement(join(20021384..20022397,20025241..20025278)) /locus_tag="TCM_014121" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(20022130..20022366) /locus_tag="TCM_014121" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21953.1" /translation="MPSYLRPPFGHFSTIWNPANAPNLIKKKTVESVTSLQHVWEVLS FDHLNEEKCCSLYLPNEASSRVSNTFGFRLSQNS" gene 20026781..20031563 /locus_tag="TCM_014122" /note="dbxref CacaoGD:Thecc1EG014122" mRNA join(20026781..20026997,20027400..20031185, 20031338..20031563) /locus_tag="TCM_014122" /product="Leucine-rich repeat protein kinase family protein" /inference="alignment:exonerate- protein:2:ricco:30138.m004028" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022968t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s07270.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2724t1" CDS join(20026916..20026997,20027400..20030611) /locus_tag="TCM_014122" /note="paralog of Thecc1EG022968t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY21954.1" /db_xref="Phytozome:POPTR_0015s07270.1" /db_xref="TAIR:AT1G74360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GT54" /translation="MKKKKIMPGDQAVTWRFTLFKFLVLITATIVAGDSLDTDKEVLL NLKTFLEEKNPVNRGKYSEWNRENSMPCQWHGISCSVDGKRVIRIDLSGNNISGEIFN NFSALTELRELDLSVNTIGGAIPDDLNRCSSLVYLNLSHNILEGELNLTGLNGLEKLD LSTNRIHGDIEVNFPAICKRLIVANLSTNNFTGRIDNGFDECWNLQHLDLSSNNFSGS IWSGFARLVAYSISENFVSGQLSKSMFTNNCSLQVLDLSENNFQGELPGEISNCKNLA ILNVWGNNFTGPIPSEMGMISTLEGLFLGNNSFSRVIPESLLNLTNLVFLDLSKNNFG GEIQVIFGKLTQVKFLVLHGNSYTGGINSSGILQLPNISRLDLSSNNFSGPLPVEISQ MPSLNFLMLAYNEFTGAIPSEYGNLPQLQALDLSFNRLSGSIPPALGKLSSLLWLMLA NNSLSGKIPPEIGNCSSLLWLNLANNQLSGSIPPELAKIGKNATSTFESNRLHSNRII AGSGECLAMKRWIPADYPPFLFVYTILTRKSCRSIWDRLLKGYGLFPMCTAGSMVRTS QISGYIQLSGNQFSGEIPSDIGMMQNFSMLHLGFNDFHGKLPAQIGQLPLVVLNITQN KFSGEIPAEIGNIKCLQNLDLSHNNFSGIFPTSFSNLTELNKFNVSYNPLISGVIPST GQLATFEKDSYLGDPLLDVPDFIDNTTDHQPNRNRRQKKSTKLAVVLVLLALTLAFLV FGILSLLVCIMVKSPAEPQGYLLQDTKYRHDLASSSGGSSPWLSDTVKVIRLDKTAFT HADILKATGNFSEDRILGQGGFGTVYRGVLPDGREVAVKKLQRDGIEGEKEFRAEMEV LSGNGFGWPHPNLVTLYGWCLDGLEKILVYEYMGGGSLEDLISDRVRLTWRRRIDVAV DIARALVFLHHECYPAIVHRDVKASNVLLDKDGRARVTDFGLARVVDAGDTHVSTTVA GTIGYVAPEYGQTWQATTKGDVYSYGVLAMELATGRRAVDGGEECLVEWARRVMGNGR NGLGRAAIPVVLLGSGLAEGAEEMRELLQIGVRCTAESPQARPNMKEVLAMLIRLTSC GGEFNYCIS" gene 20031738..20034903 /locus_tag="TCM_014123" /note="dbxref CacaoGD:Thecc1EG014123" mRNA join(20031738..20032136,20032509..20032717, 20033833..20034712) /locus_tag="TCM_014123" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042690" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400042690" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4029t3" mRNA join(20031875..20032136,20032563..20032717, 20033830..20034903) /locus_tag="TCM_014123" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042690" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400042690" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2264t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4029t3" CDS join(20032091..20032136,20032509..20032717, 20033833..20034660) /locus_tag="TCM_014123" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21955.1" /db_xref="Phytozome:PGSC0003DMP400042690" /translation="MDSDFPFKCLSHSQQDEFFYLQSPKNLQSENVAENNTMGKEMAE KRTSTMSVELAIQRELAFRRKIEELQLQPYVDSGDEIMPVQVQFPHPNPSRPNLNSSP RLSGREQLASLSSLECLPSPIPSQIPSSRPHISFGPRISERKQLASSSKSPPPQQLQA FNGGSLNHQSANVFCIVCQVPCSGSVNYKQHLNGKKHKLKLKELNFGRTDGGDICAMA NQKLWCELCKIWCTDDNLLKLHLAGQKHKKMQAKLERATAAEVDIVEEKNWCGLCGIG CSSKELLQLHFNGKKHQAELRKLECAQKGREEAQNQQKRCKFGNIWCEGKNLLQMHLI EKKKFLYKVEVKKRQWQDLIRDEGNS" CDS join(20032091..20032136,20032563..20032717, 20033830..20034660) /locus_tag="TCM_014123" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21956.1" /db_xref="Phytozome:PGSC0003DMP400042690" /translation="MDSDFPFKCLSHSQQENNTMGKEMAEKRTSTMSVELAIQRELAF RRKIEELQLQPYVDSGDEIMPVQQVQFPHPNPSRPNLNSSPRLSGREQLASLSSLECL PSPIPSQIPSSRPHISFGPRISERKQLASSSKSPPPQQLQAFNGGSLNHQSANVFCIV CQVPCSGSVNYKQHLNGKKHKLKLKELNFGRTDGGDICAMANQKLWCELCKIWCTDDN LLKLHLAGQKHKKMQAKLERATAAEVDIVEEKNWCGLCGIGCSSKELLQLHFNGKKHQ AELRKLECAQKGREEAQNQQKRCKFGNIWCEGKNLLQMHLIEKKKFLYKVEVKKRQWQ DLIRDEGNS" mobile_element complement(20034832..20034956) /note="source:scaffold_3_CACTA_0384 761 878" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20034894..20034989) /note="source:CACAO_M_S_E18487_F233_scaffold_3 1171 1253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20034905..20035002 /note="source:CACAO_M_E44848_F172_scaffold_6 1910 2009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20035976..20041360 /note="source:INTACT635_F280_scaffold_5-int 1 5357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20041117..20041391) /note="source:INTACT151F_F342_scaffold_2-int 1943 2215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20041464..20041750) /note="source:CACAO_M_E12097_F20_scaffold_2 2022 2297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20041727..20041950) /note="source:INTACT151F_F342_scaffold_2-int 1709 1935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20042340..20042673) /note="source:CACAO_M_E12097_F20_scaffold_2 1160 1511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20042375..20042989 /note="source:CACAO_M_E33977_F20_scaffold_4 16852 17466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20042988..20045834) /note="source:CACAO_M_S_E64023_F13_scaffold_5 13492 15884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20045867..20046706 /note="source:INTACT1798F_F56_scaffold_10-int 77 851" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20049787..20050049 /note="source:CACAO_on_E33_A_scaffold_3 2912 3154" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(20050044..20050379) /note="source:CACAO_on_E33_A_scaffold_3 7620 7985" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(20052521..20054252) /note="source:scaffold_2_CACTA_0276 6402 8181" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20054253..20057039 /note="source:CACAO_M_S_E32248_F87_scaffold_3 1 2787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20057796..20058511 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17254 17965" /mobile_element_type="retrotransposon:LTR/Copia" gene 20060221..20061000 /locus_tag="TCM_014126" /note="dbxref CacaoGD:Thecc1EG014126" mRNA join(20060221..20060365,20060471..20061000) /locus_tag="TCM_014126" /product="RS21-C6, EAR, NTP pyrophosphohydrolase MazG catalytic core, putative" /inference="alignment:exonerate- protein:2:ricco:30138.m004027" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020926t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007940001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1229t1" CDS join(20060231..20060365,20060471..20060716) /locus_tag="TCM_014126" /note="paralog of Thecc1EG020926t1" /codon_start=1 /product="RS21-C6, EAR, NTP pyrophosphohydrolase MazG catalytic core, putative" /protein_id="EOY21957.1" /db_xref="Phytozome:GSVIVT01007940001" /db_xref="TAIR:AT3G25400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XXQ3" /translation="MENSYECPNKSKDVSLKELRDRLAEFAEVRGWDKYHSPRNLLLA LVGEVGELSEIFQWKGEVAKGLPNWTADDKEHLEEELSDVLLYLVRLADVCGLDLGQA ALTKIIKNARKYPVVNLKTKSNYN" mobile_element 20063972..20064229 /note="source:scaffold_8_CACTA_0857 650 939" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20065904..20069143 /note="source:INTACT375F_F353_scaffold_3-int 10112 14678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20069486..20069768 /note="source:CACAO_on_SS_E90_scaffold_6 12115 12387" /mobile_element_type="transposon:TIR/Mutator" mobile_element 20069536..20074254 /note="source:CACAO_M_E51854_F82_scaffold_7 1 4766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20075247..20075334 /note="source:CACAO_M_E22265_F82_scaffold_3 8677 8763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20075316..20076095) /note="source:CACAO_M_E56826_F244_scaffold_8 2071 2806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20076507..20077425) /note="source:CACAO_on_SS_E90_scaffold_6 4855 5776" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(20077793..20078780) /note="source:CACAO_M_E48953_F82_scaffold_6 1 989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20079704..20079921) /note="source:INTACT61_F128_scaffold_2-int 11635 11858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20079719..20080860 /note="source:INTACT345_F202_scaffold_1-int 1752 2661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20081832..20082694 /note="source:CACAO_M_E33334_F87_scaffold_4 1 861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20082795..20084710) /note="source:CACAO_M_E58180_F87_scaffold_9 1 1848" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20084711..20084853 /note="source:scaffold_5_CACTA_0611 5879 6017" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20084733..20084872) /note="source:CACAO_M_E53587_F207_scaffold_8 8542 8681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20089353..20089458) /note="source:scaffold_5_CACTA_0584 1913 2024" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20089931..20092790) /note="source:CACAO_M_E69760_F9_scaffold_9 6705 9551" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20095571..20102425 /locus_tag="TCM_014128" /note="dbxref CacaoGD:Thecc1EG014128" mRNA join(20095571..20095976,20097604..20097917, 20098692..20099493,20099672..20102425) /locus_tag="TCM_014128" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene26070" /inference="similar to AA sequence:ricco:30138.m004026" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1276t2" mRNA join(20095571..20095976,20097685..20097917, 20098692..20098802,20098881..20099493,20099672..20102425) /locus_tag="TCM_014128" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence:ricco:30138.m004026" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b013656t1a3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1276t2" mRNA join(20095571..20095976,20097844..20097917, 20098692..20098802,20098881..20099493,20099672..20102425) /locus_tag="TCM_014128" /product="Uncharacterized protein isoform 3" /inference="similar to AA sequence:ricco:30138.m004026" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b013656t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1276t2" mRNA join(20095705..20095976,20097685..20097917, 20098692..20099493,20099672..20102164) /locus_tag="TCM_014128" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene26070" /inference="similar to AA sequence:ricco:30138.m004026" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1276t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1276t2" mRNA join(20095705..20095976,20097844..20097917, 20098692..20099493,20099672..20102164) /locus_tag="TCM_014128" /product="Uncharacterized protein isoform 6" /inference="alignment:exonerate-protein:2:frave:gene26070" /inference="similar to AA sequence:ricco:30138.m004026" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1276t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1276t2" mRNA join(20097381..20097917,20098692..20098802, 20098881..20099493,20099672..20102164) /locus_tag="TCM_014128" /product="Uncharacterized protein isoform 5" /inference="similar to AA sequence:ricco:30138.m004026" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1434t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1276t2" CDS join(20097672..20097917,20098692..20099493, 20099672..20101701) /locus_tag="TCM_014128" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m004026" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21958.1" /translation="MTMLGLQADMQHKSHLLGCYTAWDLNLDVNGTVWPSDNADRIVR NRHYNNGALPLSSDLNILDNKDLLKQTMLKHEAEFRNQIHELHRLYRRQKELMDEMKK IELYKHHHSLGTLQPNQVLSPKSSNHVQLPQHTSTSINLVHSQSPVSEAKDGNRGQAG HDPIHIECSSKAPEFMESNCKMFGKKILDLELPADEYIDSEEEGFSEVKMAPEVTDIP TNALKKIPEVKDRGDKELPISASGCNSVFPEGNFIPSSISLKSKVLADLNIPVKLEED KIPELSDFQDPIIGHRETSLQDLSGKSNSSFEVLSKEVIPNSQIMRDPEADLDSLFLD KHNMQRERITCNDKAGQSRNDLNSSCQDLYTEKLSIEHIDDEQAEDSSTPHGLDEAKG KLCNEILQCVGGDISSHSYKPVATVDMRSSYQIVPLADKMNSESSSVSSWRRDLKRSP IAVQALPCFKGKSSKSFTRSLGLAGNELCLSTKLLSRPKLCSAATFPQESWQNDFQLE GQPPSTSSVSLNCNNDNGSAFERHSPAKYTKDFKYVMSVKSLDLNFVLPSFSTDVACS QGASSILGEKTLENSTGCSQIAETPIHDSKSGERKDQSVPLECVLKQANSVCVHDAEL DKVEASNSLDFKRILGFHRYNKPPIPNGQCSSHASPAGNHSNSCAKEDIKDKEKDRLP DMNLEVDHVPFRGKQLAVAELFSKSKPCGKHPTFGVLIDLNSCLSLDASPLIPSHSNE IDLEPPASPENKERSPPRGESDENQLETPLVSSGQEDGDLQEALVRIAAEAIVSISSS EIQTCKESTSCEPFKASWNNSLYWFARVASSVVDDPGSEFGVNVGVKDHGDHEEYLSD GIDYFEAMTLNLTEITVEESWCKSNGQKKEEMSANFLRNQPKRGRTRRGRQQRKDFQS EILPSLASLSRYEVTEDLQMIGGLMEAAGARRESCSSRNVGRNGCAKGRRRSNARASN IMESTMNTLLKQQSVNDDVGIQQRRLIEWGKITRRPRGPRCPSSNPRLILGQV" CDS join(20097672..20097917,20098692..20098802, 20098881..20099493,20099672..20101701) /locus_tag="TCM_014128" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30138.m004026" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY21962.1" /translation="MTMLGLQADMQHKSHLLGCYTAWDLNLDVNGTVWPSDNADRIVR NRHYNNGALPLSSDLNILDNKDLLKQTMLKHEAEFRNQIHELHRLYRRQKELMDEMKK IELYKHHHSLGTLQPNQSPVSEAKDGNRGQAGHDPIHIECSSKAPEFMESNCKMFGKK ILDLELPADEYIDSEEEGFSEVKMAPEVTDIPTNALKKIPEVKDRGDKELPISASGCN SVFPEGNFIPSSISLKSKVLADLNIPVKLEEDKIPELSDFQDPIIGHRETSLQDLSGK SNSSFEVLSKEVIPNSQIMRDPEADLDSLFLDKHNMQRERITCNDKAGQSRNDLNSSC QDLYTEKLSIEHIDDEQAEDSSTPHGLDEAKGKLCNEILQCVGGDISSHSYKPVATVD MRSSYQIVPLADKMNSESSSVSSWRRDLKRSPIAVQALPCFKGKSSKSFTRSLGLAGN ELCLSTKLLSRPKLCSAATFPQESWQNDFQLEGQPPSTSSVSLNCNNDNGSAFERHSP AKYTKDFKYVMSVKSLDLNFVLPSFSTDVACSQGASSILGEKTLENSTGCSQIAETPI HDSKSGERKDQSVPLECVLKQANSVCVHDAELDKVEASNSLDFKRILGFHRYNKPPIP NGQCSSHASPAGNHSNSCAKEDIKDKEKDRLPDMNLEVDHVPFRGKQLAVAELFSKSK PCGKHPTFGVLIDLNSCLSLDASPLIPSHSNEIDLEPPASPENKERSPPRGESDENQL ETPLVSSGQEDGDLQEALVRIAAEAIVSISSSEIQTCKESTSCEPFKASWNNSLYWFA RVASSVVDDPGSEFGVNVGVKDHGDHEEYLSDGIDYFEAMTLNLTEITVEESWCKSNG QKKEEMSANFLRNQPKRGRTRRGRQQRKDFQSEILPSLASLSRYEVTEDLQMIGGLME AAGARRESCSSRNVGRNGCAKGRRRSNARASNIMESTMNTLLKQQSVNDDVGIQQRRL IEWGKITRRPRGPRCPSSNPRLILGQV" CDS join(20097699..20097917,20098692..20099493, 20099672..20101701) /locus_tag="TCM_014128" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30138.m004026" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY21961.1" /translation="MQHKSHLLGCYTAWDLNLDVNGTVWPSDNADRIVRNRHYNNGAL PLSSDLNILDNKDLLKQTMLKHEAEFRNQIHELHRLYRRQKELMDEMKKIELYKHHHS LGTLQPNQVLSPKSSNHVQLPQHTSTSINLVHSQSPVSEAKDGNRGQAGHDPIHIECS SKAPEFMESNCKMFGKKILDLELPADEYIDSEEEGFSEVKMAPEVTDIPTNALKKIPE VKDRGDKELPISASGCNSVFPEGNFIPSSISLKSKVLADLNIPVKLEEDKIPELSDFQ DPIIGHRETSLQDLSGKSNSSFEVLSKEVIPNSQIMRDPEADLDSLFLDKHNMQRERI TCNDKAGQSRNDLNSSCQDLYTEKLSIEHIDDEQAEDSSTPHGLDEAKGKLCNEILQC VGGDISSHSYKPVATVDMRSSYQIVPLADKMNSESSSVSSWRRDLKRSPIAVQALPCF KGKSSKSFTRSLGLAGNELCLSTKLLSRPKLCSAATFPQESWQNDFQLEGQPPSTSSV SLNCNNDNGSAFERHSPAKYTKDFKYVMSVKSLDLNFVLPSFSTDVACSQGASSILGE KTLENSTGCSQIAETPIHDSKSGERKDQSVPLECVLKQANSVCVHDAELDKVEASNSL DFKRILGFHRYNKPPIPNGQCSSHASPAGNHSNSCAKEDIKDKEKDRLPDMNLEVDHV PFRGKQLAVAELFSKSKPCGKHPTFGVLIDLNSCLSLDASPLIPSHSNEIDLEPPASP ENKERSPPRGESDENQLETPLVSSGQEDGDLQEALVRIAAEAIVSISSSEIQTCKEST SCEPFKASWNNSLYWFARVASSVVDDPGSEFGVNVGVKDHGDHEEYLSDGIDYFEAMT LNLTEITVEESWCKSNGQKKEEMSANFLRNQPKRGRTRRGRQQRKDFQSEILPSLASL SRYEVTEDLQMIGGLMEAAGARRESCSSRNVGRNGCAKGRRRSNARASNIMESTMNTL LKQQSVNDDVGIQQRRLIEWGKITRRPRGPRCPSSNPRLILGQV" CDS join(20097699..20097917,20098692..20098802, 20098881..20099493,20099672..20101701) /locus_tag="TCM_014128" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m004026" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21959.1" /translation="MQHKSHLLGCYTAWDLNLDVNGTVWPSDNADRIVRNRHYNNGAL PLSSDLNILDNKDLLKQTMLKHEAEFRNQIHELHRLYRRQKELMDEMKKIELYKHHHS LGTLQPNQSPVSEAKDGNRGQAGHDPIHIECSSKAPEFMESNCKMFGKKILDLELPAD EYIDSEEEGFSEVKMAPEVTDIPTNALKKIPEVKDRGDKELPISASGCNSVFPEGNFI PSSISLKSKVLADLNIPVKLEEDKIPELSDFQDPIIGHRETSLQDLSGKSNSSFEVLS KEVIPNSQIMRDPEADLDSLFLDKHNMQRERITCNDKAGQSRNDLNSSCQDLYTEKLS IEHIDDEQAEDSSTPHGLDEAKGKLCNEILQCVGGDISSHSYKPVATVDMRSSYQIVP LADKMNSESSSVSSWRRDLKRSPIAVQALPCFKGKSSKSFTRSLGLAGNELCLSTKLL SRPKLCSAATFPQESWQNDFQLEGQPPSTSSVSLNCNNDNGSAFERHSPAKYTKDFKY VMSVKSLDLNFVLPSFSTDVACSQGASSILGEKTLENSTGCSQIAETPIHDSKSGERK DQSVPLECVLKQANSVCVHDAELDKVEASNSLDFKRILGFHRYNKPPIPNGQCSSHAS PAGNHSNSCAKEDIKDKEKDRLPDMNLEVDHVPFRGKQLAVAELFSKSKPCGKHPTFG VLIDLNSCLSLDASPLIPSHSNEIDLEPPASPENKERSPPRGESDENQLETPLVSSGQ EDGDLQEALVRIAAEAIVSISSSEIQTCKESTSCEPFKASWNNSLYWFARVASSVVDD PGSEFGVNVGVKDHGDHEEYLSDGIDYFEAMTLNLTEITVEESWCKSNGQKKEEMSAN FLRNQPKRGRTRRGRQQRKDFQSEILPSLASLSRYEVTEDLQMIGGLMEAAGARRESC SSRNVGRNGCAKGRRRSNARASNIMESTMNTLLKQQSVNDDVGIQQRRLIEWGKITRR PRGPRCPSSNPRLILGQV" CDS join(20097885..20097917,20098692..20099493, 20099672..20101701) /locus_tag="TCM_014128" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30138.m004026" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY21963.1" /translation="MLKHEAEFRNQIHELHRLYRRQKELMDEMKKIELYKHHHSLGTL QPNQVLSPKSSNHVQLPQHTSTSINLVHSQSPVSEAKDGNRGQAGHDPIHIECSSKAP EFMESNCKMFGKKILDLELPADEYIDSEEEGFSEVKMAPEVTDIPTNALKKIPEVKDR GDKELPISASGCNSVFPEGNFIPSSISLKSKVLADLNIPVKLEEDKIPELSDFQDPII GHRETSLQDLSGKSNSSFEVLSKEVIPNSQIMRDPEADLDSLFLDKHNMQRERITCND KAGQSRNDLNSSCQDLYTEKLSIEHIDDEQAEDSSTPHGLDEAKGKLCNEILQCVGGD ISSHSYKPVATVDMRSSYQIVPLADKMNSESSSVSSWRRDLKRSPIAVQALPCFKGKS SKSFTRSLGLAGNELCLSTKLLSRPKLCSAATFPQESWQNDFQLEGQPPSTSSVSLNC NNDNGSAFERHSPAKYTKDFKYVMSVKSLDLNFVLPSFSTDVACSQGASSILGEKTLE NSTGCSQIAETPIHDSKSGERKDQSVPLECVLKQANSVCVHDAELDKVEASNSLDFKR ILGFHRYNKPPIPNGQCSSHASPAGNHSNSCAKEDIKDKEKDRLPDMNLEVDHVPFRG KQLAVAELFSKSKPCGKHPTFGVLIDLNSCLSLDASPLIPSHSNEIDLEPPASPENKE RSPPRGESDENQLETPLVSSGQEDGDLQEALVRIAAEAIVSISSSEIQTCKESTSCEP FKASWNNSLYWFARVASSVVDDPGSEFGVNVGVKDHGDHEEYLSDGIDYFEAMTLNLT EITVEESWCKSNGQKKEEMSANFLRNQPKRGRTRRGRQQRKDFQSEILPSLASLSRYE VTEDLQMIGGLMEAAGARRESCSSRNVGRNGCAKGRRRSNARASNIMESTMNTLLKQQ SVNDDVGIQQRRLIEWGKITRRPRGPRCPSSNPRLILGQV" CDS join(20097885..20097917,20098692..20098802, 20098881..20099493,20099672..20101701) /locus_tag="TCM_014128" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30138.m004026" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY21960.1" /translation="MLKHEAEFRNQIHELHRLYRRQKELMDEMKKIELYKHHHSLGTL QPNQSPVSEAKDGNRGQAGHDPIHIECSSKAPEFMESNCKMFGKKILDLELPADEYID SEEEGFSEVKMAPEVTDIPTNALKKIPEVKDRGDKELPISASGCNSVFPEGNFIPSSI SLKSKVLADLNIPVKLEEDKIPELSDFQDPIIGHRETSLQDLSGKSNSSFEVLSKEVI PNSQIMRDPEADLDSLFLDKHNMQRERITCNDKAGQSRNDLNSSCQDLYTEKLSIEHI DDEQAEDSSTPHGLDEAKGKLCNEILQCVGGDISSHSYKPVATVDMRSSYQIVPLADK MNSESSSVSSWRRDLKRSPIAVQALPCFKGKSSKSFTRSLGLAGNELCLSTKLLSRPK LCSAATFPQESWQNDFQLEGQPPSTSSVSLNCNNDNGSAFERHSPAKYTKDFKYVMSV KSLDLNFVLPSFSTDVACSQGASSILGEKTLENSTGCSQIAETPIHDSKSGERKDQSV PLECVLKQANSVCVHDAELDKVEASNSLDFKRILGFHRYNKPPIPNGQCSSHASPAGN HSNSCAKEDIKDKEKDRLPDMNLEVDHVPFRGKQLAVAELFSKSKPCGKHPTFGVLID LNSCLSLDASPLIPSHSNEIDLEPPASPENKERSPPRGESDENQLETPLVSSGQEDGD LQEALVRIAAEAIVSISSSEIQTCKESTSCEPFKASWNNSLYWFARVASSVVDDPGSE FGVNVGVKDHGDHEEYLSDGIDYFEAMTLNLTEITVEESWCKSNGQKKEEMSANFLRN QPKRGRTRRGRQQRKDFQSEILPSLASLSRYEVTEDLQMIGGLMEAAGARRESCSSRN VGRNGCAKGRRRSNARASNIMESTMNTLLKQQSVNDDVGIQQRRLIEWGKITRRPRGP RCPSSNPRLILGQV" mobile_element complement(20102484..20103301) /note="source:CACAO_M_S_E4911_F76_scaffold_1 15447 16258" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20103413..20104030) /note="source:CACAO_M_S_E4911_F76_scaffold_1 13984 14512" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20106599..20106883 /note="source:CACAO_M_S_E16721_F36_scaffold_2 4244 4535" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20107651..20107848 /note="source:INTACT1427F_F390_scaffold_9-int 2064 2261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20107899..20108040) /note="source:INTACT1341F_F15_scaffold_8-int 800 936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20113734..20113872) /note="source:CACAO_M_S_E17765_F76_scaffold_3 18102 18229" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20114948..20118097) /locus_tag="TCM_014130" /note="dbxref CacaoGD:Thecc1EG014130" mRNA complement(join(20114948..20115204,20115300..20115473, 20115853..20115988,20116635..20116717,20116893..20117051, 20117153..20117223,20117432..20118097)) /locus_tag="TCM_014130" /product="Flavin-binding monooxygenase family protein" /inference="alignment:exonerate- protein:2:ricco:30138.m004025" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016015t1" /inference="similar to AA sequence:ricco:30138.m004025" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11548t00001" CDS complement(join(20115007..20115204,20115300..20115473, 20115853..20115988,20116635..20116717,20116893..20117051, 20117153..20117223,20117432..20117984)) /locus_tag="TCM_014130" /note="dbxref ricco:30138.m004025; paralog of Thecc1EG016015t1" /codon_start=1 /product="Flavin-binding monooxygenase family protein" /protein_id="EOY21964.1" /db_xref="TAIR:AT5G07800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GT52" /translation="MVSDRGQSKNVCVIGAGPSGLVAARELRKEGHTAVVLEQNHDVG GQWLYEPHVDIEDPLGRNKFLSVHSSIYDSLRIASPREIMGYTDFPFLMKKGRDMRRF PGHNELWLYLKDFCEWFGLKEMIRFNTRVEYVGMLDYGEFGKDLKWVVKSKEKNAEKV VEEVFDAVVVATGHYSQPRLPCIKGMDAWKRKQMHSHIYRVPEPFRDEVVVIVGNSQS GQDISMEIVEVAKEVYLSARSLDITEGLSKVISKHQNLHLHPQMESLHEDGRVQFEDG SWVIADTIIYCTGYSYTFPFLDTKGIVVVDDNRVGPLFEHTFPPSLAPSLSFVGIPRK LIGFPFFESQAKWIAQVLSGKRSLPSWDDMMQSIKEFYHSRELAGIPKRNTHDLADFE YCDKYADYTGSPHLEEWRKQLCISALVNSFANLETYRDSYDDDELLQEALQSPHFTQL GDDALAL" mobile_element complement(20121009..20121083) /note="source:CACAO_M_E34409_F73_scaffold_5 2259 2327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20123039..20124539 /note="source:CACAO_M_E34142_F67_scaffold_4 3703 5181" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20123040..20124763) /note="source:CACAO_M_E3935_F390_scaffold_1 15822 17455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20126282..20126965) /note="source:CACAO_M_E3935_F390_scaffold_1 702 1386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20126984..20127302 /note="source:CACAO_M_S_E32252_F73_scaffold_3 1 319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20128074..20129723 /note="source:CACAO_M_S_E32252_F73_scaffold_3 320 1961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20129884..20129976) /note="source:CACAO_M_S_E38315_F276_scaffold_4 7585 7675" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20129973..20130427 /note="source:CACAO_M_E12044_F76_scaffold_2 21108 21430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20135381..20135752) /note="source:scaffold_8_CACTA_0859 16098 16468" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20140119..20140321 /note="source:INTACT139F_F15_scaffold_2-int 7691 7869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20140254..20140745) /note="source:CACAO_M_S_E4911_F76_scaffold_1 11955 12395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20140719..20141563) /note="source:CACAO_M_S_E4911_F76_scaffold_1 10055 10900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20141664..20143129 /note="source:CACAO_M_E5390_F15_scaffold_2 3299 4764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20145835..20146150) /note="source:CACAO_M_E56826_F244_scaffold_8 4884 5199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20146453..20146809) /note="source:CACAO_M_E56826_F244_scaffold_8 4226 4582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20149189..20149221 /note="source:INTACT66F_F95_scaffold_2-int 8061 8092" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20149206..20149435) /note="source:INTACT1441F_F99_scaffold_9-int 5478 5707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20149536..20149723) /note="source:CACAO_M_E86338_F15_scaffold_15 9762 9952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20149705..20149993) /note="source:CACAO_M_E4753_F17_scaffold_2 11005 11293" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20149842..20150047 /note="source:INTACT230_F178_scaffold_3-int 12922 13122" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20154220..20156922 /locus_tag="TCM_014133" /note="dbxref CacaoGD:Thecc1EG014133" mRNA join(20154220..20154356,20155238..20155881, 20156502..20156922) /locus_tag="TCM_014133" /product="RING/U-box superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m004023" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018694t1" /inference="similar to AA sequence:ricco:30138.m004023" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02306t00002; alternateUTRof:Thecc1EG014133t1; inference alignment:Newbler:10:TSA:cgbaB_g02306t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8538t1" mRNA join(20154270..20154356,20155258..20155881, 20156502..20156847) /locus_tag="TCM_014133" /product="RING/U-box superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m004023" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018694t1" /inference="similar to AA sequence:ricco:30138.m004023" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8538t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8538t1" CDS join(20155308..20155881,20156502..20156506) /locus_tag="TCM_014133" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m004023; paralog of Thecc1EG018694t1" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 1" /protein_id="EOY21965.1" /db_xref="TAIR:AT3G29270.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H5M0" /translation="MWNFATKAFPGVSGLKTDSLKPSQVSSECSDDESLNNSGEERLE CPICWESFNIVENIPYVLWCGHTLCKNCVLGLQRAVVKFPTLPIHLPFFVSCPWCNLF SLRLVYKGNVKFPSKNYFLLWMVESMNGDRAKSHSSFHGVPPACSKNRIIDAGNQLRR VNNRRASCSTHHSESSLITSYFSAERLQLSLR" CDS join(20155308..20155881,20156502..20156506) /locus_tag="TCM_014133" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m004023; paralog of Thecc1EG018694t1" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 1" /protein_id="EOY21966.1" /db_xref="TAIR:AT3G29270.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H5M0" /translation="MWNFATKAFPGVSGLKTDSLKPSQVSSECSDDESLNNSGEERLE CPICWESFNIVENIPYVLWCGHTLCKNCVLGLQRAVVKFPTLPIHLPFFVSCPWCNLF SLRLVYKGNVKFPSKNYFLLWMVESMNGDRAKSHSSFHGVPPACSKNRIIDAGNQLRR VNNRRASCSTHHSESSLITSYFSAERLQLSLR" gene 20155832..20156318 /locus_tag="TCM_014134" /note="dbxref CacaoGD:Thecc1EG014134" mRNA 20155832..20156318 /locus_tag="TCM_014134" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30138.m004023" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07920t00001" CDS 20155957..20156187 /locus_tag="TCM_014134" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21967.1" /translation="MPYLPVQPFWPCIFLSLLCLPSLLFLFCTLPSQAWIGWLGKSSI KLPLTFPSCAIKSCSIELLHVKTPCNLTTSPC" gene complement(20157494..20188272) /locus_tag="TCM_014135" /note="dbxref CacaoGD:Thecc1EG014135" mRNA complement(join(20157494..20157697,20161018..20161176, 20170818..20170967,20180837..20181585,20181694..20181800, 20181921..20182017,20182209..20182575,20183625..20183790, 20186523..20186540,20186966..20187323,20188145..20188272)) /locus_tag="TCM_014135" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29823.m000212.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031347t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" mobile_element complement(20160655..20161643) /note="source:INTACT375F_F353_scaffold_3-int 1876 2858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20161697..20161745) /note="source:CACAO_M_E44210_F112_scaffold_5 11711 11759" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20162217..20162331) /note="source:INTACT345_F202_scaffold_1-int 12856 12975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20163157..20164214 /note="source:INTACT61_F128_scaffold_2-int 2279 3328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20163801..20171175) /note="source:INTACT157_F155_scaffold_1-int 3941 11083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20171162..20171979) /note="source:INTACT157_F155_scaffold_1-int 3206 4015" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20171257..20171978 /note="source:INTACT61_F128_scaffold_2-int 10156 10867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20171979..20175069 /note="source:CACAO_M_S_E32254_F42_scaffold_3 1 3091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20175070..20175835 /note="source:INTACT61_F128_scaffold_2-int 46 799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20179696..20179888) /note="source:INTACT375F_F353_scaffold_3-int 15634 15806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20180714..20180938) /note="source:INTACT157_F155_scaffold_1-int 11264 11494" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(20181238..20181585,20181694..20181800, 20181921..20182017,20182209..20182575,20183625..20183790, 20186523..20186540,20186966..20187296)) /locus_tag="TCM_014135" /note="paralog of Thecc1EG031347t1; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21968.1" /db_xref="TAIR:AT4G23160.1" /translation="MLTASDGKKRLKKDLTCSHYGKKGHLKEKCYRLVGFLKDFKFTK SKTNSKKGKFVANNVTSMYEDESTMVQPKQEENSAGNGTMSQISVIKQQVSKLIELLN ENGITCSDGPSIMDMIRVARASSGLYLMQDSQVKQDLSQFSFKNLVKNSFVSFVDSFK SKYKDFDLWHFSLPTADSTSPTEANYDIDPNQPIRKSTRTRNLPKYLEAYQVDLPSHA SAVTSHPIAKFVSHHNLSPAHKAFTISLTSIQEHKTYHQVVTHSHWRHAMAAELQALE DNDTWSMYRYQLVVILLVLDVNNTFLHEDLDEEVYIDLPEGYVVQGEYLEDYSLFTMN TNDGEFIALLTYVDDILIGSTSAQTAAARKYTLDLLEEYGLLGAKPTSTLIDYNTKLT KASQEEEITDPTRYRQLVGKLLYLTFTRPDISFAMQTLAQFMDKPAHDHYMAAYRVLK YLKGALGQGILMGADSTVKISAYCDSD" gene complement(20183721..20188166) /locus_tag="TCM_014138" /note="dbxref CacaoGD:Thecc1EG014138" mRNA complement(join(20183721..20183790,20186523..20186540, 20186966..20188166)) /locus_tag="TCM_014138" /product="Integrase, catalytic region, putative" /inference="alignment:exonerate- protein:2:ricco:29823.m000212.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020952t1" /inference="similar to AA sequence:ricco:29823.m000212" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3859t1" mobile_element complement(20183770..20183793) /note="source:CACAO_M_E49857_F85_scaffold_7 3335 3358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20183794..20185081 /note="source:CACAO_M_E22703_F73_scaffold_3 1 1288" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20186166..20186527 /note="source:CACAO_M_E22703_F73_scaffold_3 1289 1642" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(20187324..20188052) /locus_tag="TCM_014138" /note="dbxref ricco:29823.m000212; paralog of Thecc1EG020952t1" /codon_start=1 /product="Integrase, catalytic region, putative" /protein_id="EOY21969.1" /db_xref="TAIR:AT1G21280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HT49" /translation="MSESTESSFQGSQTMSQTSPIGDPQFPYFLHHTNHPGSVIINPK LTTTNYVTWSRSFLLALSIRNKKGFINGTISKPQPTDPLYPSWIRCNNLIVAWLLDSI TPPIASTIFYMDSVVDIWNTLKQSFAQPDDSRVCNLQYTLGNVTQGTRSVDSYFIELK GIWEELRNYRPLPHCVCGKYSPECFRRYSDQYQKDMVFRFLNGLNDFFSAVRSQIILM DPIPSLDKVYNLVLREEAQRNLLF" gene 20189055..20193699 /locus_tag="TCM_014139" /note="dbxref CacaoGD:Thecc1EG014139" mRNA join(20189055..20189064,20190343..20193699) /locus_tag="TCM_014139" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30138.m004022" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2214t1" CDS 20190357..20192711 /locus_tag="TCM_014139" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21970.1" /translation="MKVEAIIDIPATPKINEIESVSTRRHSTGKVIMPSGGVTAISRY LRTSQGSCHDICKYGTRCNLETESKSRRSSMPKIITAKRGAGQTMERTESKLGERRKK SEVSLKLSPDFNIQEPEYPVVIKSAQRQGGHHVENTETNLTDRRKSEINLKPSDDTNQ KRGYSVVSLKPSPDDLVDIKTRAEEGEVPDEENAETKLSKGDKKPDVSQKPSPDSKSQ KPVDPDRIEREVSSWSNKEIVSQKQVPLLLRETDFAVAHARDSKLKPQSKPYSPLKQA CSSGKQNLEGSKSKETNVMSMTSLGVSGGRNKGEMTISEGMRNFMIGEKKNVVPSSVS LSPKKSSTSVSSMNARKKKSRGVCRSKKQENSKKIKPEKSCGKDGIGSKNLTGVSHLT DQENVQKSYSKQTSISDIPEKTLYIIESNPENKPAKSLQSSFHVSDLSTMPSSFSKDK SVKHTRNGIPTGQSPQSYEKKNMIYRPKGIHACGLPPSLSLLPGKKGLTSIPYGLNVT QPSLTSSLSLASSKSIHSDDSSEHDEVAAKKQKSSSKMMCKGRPKRALVTTLNDRHLQ GEKLNFQRGKVIEVPLEDCTSRRLAFKRRMLADNRNDDNQIGEVEDCTPRRLKFRQRV LIDNRNGDNQNGRCEEFTPRRLKFRRRALVDNGNSDIQNGRGEDYTPRKLKFRPRVLG DNKNGNILNSECYTSKNKSVGKEADIGQEVQSDKISLRHNDVKEKKNSGILYNNMIEE TASRLVRTKSSKVKALVSAFESVISLLDTSFSETNNICGVTEGL" mobile_element complement(20197022..20197280) /note="source:INTACT443_F215_scaffold_4-int 3924 4146" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20197284..20199909 /note="source:CACAO_M_E85026_F215_scaffold_10 551 3233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20203769..20203892 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3864 3989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20205502..20205574) /note="source:INTACT261_F189_scaffold_2-int 1234 1313" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20205575..20205587 /note="source:INTACT19F_F94_scaffold_1-int 14262 14353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20206299..20208001 /note="source:CACAO_M_E22704_F3_scaffold_3 1 1703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20208569..20208858) /note="source:INTACT261_F189_scaffold_2-int 167 285" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(20212503..20216052) /locus_tag="TCM_014141" /note="dbxref CacaoGD:Thecc1EG014141" mRNA complement(join(20212503..20213111,20213403..20213771, 20213869..20213934,20214053..20214151,20214354..20214855, 20215743..20216052)) /locus_tag="TCM_014141" /product="DNA binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m004021" /inference="similar to AA sequence:ricco:30138.m004021" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3267t2_C2" mRNA complement(join(20212503..20213111,20213403..20213771, 20213869..20213934,20214053..20214151,20214354..20216052)) /locus_tag="TCM_014141" /product="DNA binding protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:30138.m004021" /inference="similar to AA sequence:ricco:30138.m004021" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b013670t1a4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3267t2_C2" mRNA complement(join(20212615..20213111,20213403..20213771, 20213869..20213934,20214053..20214151,20214354..20214835, 20215743..20216047)) /locus_tag="TCM_014141" /product="DNA binding protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30138.m004021" /inference="similar to AA sequence:ricco:30138.m004021" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3206t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3267t2_C2" mRNA complement(join(20212615..20213111,20213403..20213771, 20213869..20213934,20214053..20214151,20214354..20214855, 20215743..20216047)) /locus_tag="TCM_014141" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m004021" /inference="similar to AA sequence:ricco:30138.m004021" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3206t2; alternateUTRof:Thecc1EG014141t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3267t2_C2" CDS complement(join(20212998..20213111,20213403..20213771, 20213869..20213934,20214053..20214151,20214354..20214855, 20215743..20215861)) /locus_tag="TCM_014141" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m004021" /codon_start=1 /product="DNA binding protein, putative isoform 1" /protein_id="EOY21971.1" /db_xref="TAIR:AT4G00050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLT3" /translation="MNQCVVPNWNLKHQRQEQVEEEGNRSSHVLNSSNAHLVPMSNYE VAELTWENGQLAMHGLSGLLPTAPPTKPTWGRSNDTLESIVHQATCHKQKQNFNLLQH DQTRSNRSSIAASSVGNWAESSSRLPVAAAAALLKKRARSDSDQCRKNLSGGIQEDRA DRSACASASAAFCRDNDATMMTWASHESPQSMKTKTADEDSSYHDGSENQDEDRETRG ETGRSHSTRRSRAAAIHNLSERRRRDRINQKMRTLQKLVPNASKTDKASMLDEVIEYL KQLQAQVQMMSMRSMPQMMVPLGMQQHLQMSLLARMGMGMLDINSMARFPSQSLPPLM HPSPVTVPPTFLPPFVAPPMIPTREAAQANSDAISNASVPLPDPYCALLAQSVNMDLY SKMAALYRPQINQTTQTASSPSRSNNVQED" CDS complement(join(20212998..20213111,20213403..20213771, 20213869..20213934,20214053..20214151,20214354..20214855, 20215743..20215861)) /locus_tag="TCM_014141" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m004021" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY21972.1" /db_xref="TAIR:AT5G61270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLT3" /translation="MNQCVVPNWNLKHQRQEQVEEEGNRSSHVLNSSNAHLVPMSNYE VAELTWENGQLAMHGLSGLLPTAPPTKPTWGRSNDTLESIVHQATCHKQKQNFNLLQH DQTRSNRSSIAASSVGNWAESSSRLPVAAAAALLKKRARSDSDQCRKNLSGGIQEDRA DRSACASASAAFCRDNDATMMTWASHESPQSMKTKTADEDSSYHDGSENQDEDRETRG ETGRSHSTRRSRAAAIHNLSERRRRDRINQKMRTLQKLVPNASKTDKASMLDEVIEYL KQLQAQVQMMSMRSMPQMMVPLGMQQHLQMSLLARMGMGMLDINSMARFPSQSLPPLM HPSPVTVPPTFLPPFVAPPMIPTREAAQANSDAISNASVPLPDPYCALLAQSVNMDLY SKMAALYRPQINQTTQTASSPSRSNNVQED" CDS complement(join(20212998..20213111,20213403..20213771, 20213869..20213934,20214053..20214151,20214354..20214899)) /locus_tag="TCM_014141" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30138.m004021" /codon_start=1 /product="DNA binding protein, putative isoform 4" /protein_id="EOY21974.1" /db_xref="TAIR:AT5G61270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLT3" /translation="MEMPCFNQFLYLKFRSNYEVAELTWENGQLAMHGLSGLLPTAPP TKPTWGRSNDTLESIVHQATCHKQKQNFNLLQHDQTRSNRSSIAASSVGNWAESSSRL PVAAAAALLKKRARSDSDQCRKNLSGGIQEDRADRSACASASAAFCRDNDATMMTWAS HESPQSMKTKTADEDSSYHDGSENQDEDRETRGETGRSHSTRRSRAAAIHNLSERRRR DRINQKMRTLQKLVPNASKTDKASMLDEVIEYLKQLQAQVQMMSMRSMPQMMVPLGMQ QHLQMSLLARMGMGMLDINSMARFPSQSLPPLMHPSPVTVPPTFLPPFVAPPMIPTRE AAQANSDAISNASVPLPDPYCALLAQSVNMDLYSKMAALYRPQINQTTQTASSPSRSN NVQED" CDS complement(join(20212998..20213111,20213403..20213771, 20213869..20213934,20214053..20214151,20214354..20214806)) /locus_tag="TCM_014141" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30138.m004021" /codon_start=1 /product="DNA binding protein, putative isoform 3" /protein_id="EOY21973.1" /db_xref="TAIR:AT5G61270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLT3" /translation="MHGLSGLLPTAPPTKPTWGRSNDTLESIVHQATCHKQKQNFNLL QHDQTRSNRSSIAASSVGNWAESSSRLPVAAAAALLKKRARSDSDQCRKNLSGGIQED RADRSACASASAAFCRDNDATMMTWASHESPQSMKTKTADEDSSYHDGSENQDEDRET RGETGRSHSTRRSRAAAIHNLSERRRRDRINQKMRTLQKLVPNASKTDKASMLDEVIE YLKQLQAQVQMMSMRSMPQMMVPLGMQQHLQMSLLARMGMGMLDINSMARFPSQSLPP LMHPSPVTVPPTFLPPFVAPPMIPTREAAQANSDAISNASVPLPDPYCALLAQSVNMD LYSKMAALYRPQINQTTQTASSPSRSNNVQED" gene 20217817..20218458 /locus_tag="TCM_014142" /note="dbxref CacaoGD:Thecc1EG014142" mRNA 20217817..20218458 /locus_tag="TCM_014142" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" CDS 20218036..20218290 /locus_tag="TCM_014142" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21975.1" /translation="MRLSLLKSVGDAFNFCSDVNVHNIIFAPKFQAETIKLVNGLISQ VAFLRLLKHFMSVSFCKRMAVVSISYSAILMKDVQCHWFQ" gene complement(20218999..20220632) /locus_tag="TCM_014143" /note="dbxref CacaoGD:Thecc1EG014143" mRNA complement(join(20218999..20219227,20219317..20219395, 20219607..20219730,20219805..20220037,20220540..20220632)) /locus_tag="TCM_014143" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4060t2" CDS complement(join(20219332..20219395,20219607..20219730, 20219805..20220037,20220540..20220565)) /locus_tag="TCM_014143" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21976.1" /translation="MENQIKESRKQNWFQRQFSSQNSQSNHPIEGAHEAAVAAAAFAI QSLQEAKATKLKTKSRKDNGRNAMLHSKGTTSLFSYKKTKIAVDNSKKKPMEEKTKEF EGVYSAAKPSSKSAVIPIAPGDNAEWYDKLKSVVACGSVKMLRAKD" mobile_element 20221205..20221502 /note="source:scaffold_2_CACTA_0269 4334 4630" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20221490..20221843 /note="source:scaffold_2_CACTA_0269 4958 5307" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20222985..20223441 /note="source:scaffold_2_CACTA_0269 5345 5817" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20223642..20223892 /note="source:INTACT337_F59_scaffold_7-int 1 252" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20223897..20226685 /note="source:CACAO_M_E22705_F79_scaffold_3 1 2789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20226732..20230072) /note="source:INTACT112_F37_scaffold_2-int 3896 7269" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20230071..20230986) /note="source:INTACT249_F59_scaffold_7-int 27 977" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(20235960..20243716) /locus_tag="TCM_014147" /note="dbxref CacaoGD:Thecc1EG014147" mRNA complement(join(20235960..20236672,20236773..20236854, 20237061..20237271,20237458..20237610,20237954..20238007, 20238446..20238453,20241894..20241985,20242163..20242263, 20243255..20243716)) /locus_tag="TCM_014147" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30138.m004019" /inference="similar to AA sequence:Phytozome:POPTR_0015s03400.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; weak similarity to Remorin family protein; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3739t2" mobile_element 20236101..20236138 /note="source:INTACT337_F59_scaffold_7-int 293 329" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(20236481..20236672,20236773..20236854, 20237061..20237271,20237458..20237610,20237954..20238007, 20238446..20238453,20241894..20241985,20242163..20242263, 20243255..20243570)) /locus_tag="TCM_014147" /note="weak similarity to Remorin family protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY21977.1" /db_xref="Phytozome:POPTR_0015s03400.1" /db_xref="TAIR:AT5G61280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SI44" /translation="MIKNMRTENEANMIKNSCDVEFVLALSLDHINDGWIFVSGATFR ISTSNEFVTIYEECSNLLMGMTIHVKVVGISIVYFNIFDVVVRVLFEVRHTLKIRRNL ISLGYCLGKEFEIPWKMLLWELLFGHGCALGEIETLKRCHLLQGYTKNDYGLAYDEGG TNERGFMAKSKGGRGAQRSTRGRTAESLKGVAAAAYAINSLEEDEVRRRIKTERLRND TTTRVRNSDRVTRRYSSKEVRTVGETSSRKSKEQDYRRQESALTTRKPGHSSSARPMT MEAGDQRWKGNSSQLNVVETKADAWEKAQMEKVNRRYEDKKASILAWANEKKLRAKIK MERRKKELEQKIKRNQQFYQAKIARIDHVAGGARAQADEQRRNEELKVKEKARKTRAS GQDPVTCFCF" mobile_element complement(20244425..20244995) /note="source:CACAO_M_E59741_F73_scaffold_9 1757 2327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20248870..20250859 /note="source:INTACT261_F189_scaffold_2-int 4148 6145" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20250856..20254440 /note="source:INTACT261_F189_scaffold_2-int 8860 12392" /mobile_element_type="retrotransposon:LTR/Copia" gene 20256813..20272407 /locus_tag="TCM_014152" /note="dbxref CacaoGD:Thecc1EG014152" mRNA join(20256813..20257519,20257889..20258248, 20258735..20258867,20260288..20260463,20260694..20260767, 20260996..20261031,20261116..20261200,20261550..20261609, 20262467..20262650,20263992..20264188,20264746..20264847, 20265403..20265513,20266495..20266560,20266647..20266745, 20267468..20267689,20267984..20268139,20268243..20268332, 20269664..20269975,20270062..20270249,20270319..20270421, 20270520..20270665,20270891..20270970,20271106..20271281, 20271478..20271730,20272031..20272407) /locus_tag="TCM_014152" /product="SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m004018" /inference="similar to AA sequence:ricco:30138.m004018" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4087t5" mRNA join(20256813..20257519,20257889..20258248, 20258735..20258867,20260288..20260463,20260694..20260767, 20260996..20261031,20261116..20261200,20261550..20261609, 20262467..20262650,20263992..20264188,20264746..20264847, 20265403..20265513,20266495..20266560,20266647..20266745, 20267468..20267689,20267984..20268139,20268243..20268332, 20269664..20269975,20270062..20270249,20270319..20270421, 20270520..20270970,20271106..20271349) /locus_tag="TCM_014152" /product="SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30138.m004018" /inference="similar to AA sequence:ricco:30138.m004018" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b013679t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4087t5" CDS join(20257157..20257519,20257889..20258248, 20258735..20258867,20260288..20260463,20260694..20260767, 20260996..20261031,20261116..20261200,20261550..20261609, 20262467..20262650,20263992..20264188,20264746..20264847, 20265403..20265513,20266495..20266560,20266647..20266745, 20267468..20267689,20267984..20268139,20268243..20268332, 20269664..20269975,20270062..20270249,20270319..20270421, 20270520..20270665,20270891..20270970,20271106..20271281, 20271478..20271612) /locus_tag="TCM_014152" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m004018" /codon_start=1 /product="SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein, putative isoform 1" /protein_id="EOY21978.1" /db_xref="TAIR:AT5G07810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K856" /translation="MELTEEQRKQAEANRLAAIAKRKALIESSTSIVNIHYRQNHDHY WRLTKCPKLANDNAHIPKRPQDSNLAPVSNTKLCKKFQVRLEICSPDSFSVTPGTVQG CPYQGVEECLRRLRDILSDVTPSHYTQNSGGEKACVYNLRDYGSVLSCLRKSKDIEIK EIPHLTLRVIETFSHCFVTGQWIPCRPEHLSEEDVDELIGKLPRTLLDRLLPFQLDGI RFGLQRGGRCLIADEMGLGKTLQAIAIAGCFMNEGCILVVCPAVLRYSWAEELERWLP CCLPSDIHLVFGHRDNPAYLKKCPRVVVISYTMLKHLRKSMLEQEWALLIVDESHHLR CSQKASESGEIQTVLDLAERVRRIVLLSGTPSLSRPYDIFHQINMLWPGLLGENKYKF AETYCAVNLGQSSQGFKDFSKGIRLEELNVLLSQTVMIRRLKEHVLGQLPPKRRQLIR LQLKRSDIASAKAAISFANGDDFEKNASKDTASENLEENHDGERFCNSRELSYQELGV AKLRGFREWFSIHPLIAKSDAIEELDPNSSSHKMIIFAHHHKVLDGIQEFICEKGIGF VRIDGTTLPKDRQSAVLSFQSSNGVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL MLQAEDRAHRRGQTSAVNIYIFCAKDTMDESYWQSLNKSLHRVSSTTNGKYDAMQEIE VEGISYLVTPDGSCKRKILRKAAPGKLSLDLEKMQDSECFLDMQLSEACADATVQMND LSVGINQNYGSYLHNDGGMVPDLLINKDLVCMEDKNELHPSAADIGICEVAPPLEMNK INKDRDPLPKGQTITADYGVPIQLLDDECCSNQVNSLRFEVSQYTGRIHLYSCIPGTD LRPRPLFQNFRPEEIESEDALTSDNKETVSKYFKDNPAYRHALWVFVNDWNKLRPIEQ RKLHGKPLQLPLSVELWYLKESINHDRGGLLKGGSKRRTTPLCEISISLPPNAVWKKV HLRGSCRKKEREYTQGWTLTDEPLCKLCQKPCKGRSAKTPEYFEDLFCNLGCYEEYRL RTSNRSIRQELFQIEHGICSNCQLDCHQLVKHLKPLSSERRREYIAKVAPKIASQKSL VDKLVSDPSEGNVWHADHIVPVYRGGGECRLENMRTLCVACHADVTAVQCAERSSMRI KAKKNLKAIMSDLRNAGNIEKNASCRKDQGPSEMIKDITDDELLVNVPGSAYTGGKSS SPQTKDLKDCPTP" CDS join(20257157..20257519,20257889..20258248, 20258735..20258867,20260288..20260463,20260694..20260767, 20260996..20261031,20261116..20261200,20261550..20261609, 20262467..20262650,20263992..20264188,20264746..20264847, 20265403..20265513,20266495..20266560,20266647..20266745, 20267468..20267689,20267984..20268139,20268243..20268332, 20269664..20269975,20270062..20270249,20270319..20270421, 20270520..20270792) /locus_tag="TCM_014152" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m004018" /codon_start=1 /product="SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein, putative isoform 2" /protein_id="EOY21979.1" /db_xref="TAIR:AT5G07810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K856" /translation="MELTEEQRKQAEANRLAAIAKRKALIESSTSIVNIHYRQNHDHY WRLTKCPKLANDNAHIPKRPQDSNLAPVSNTKLCKKFQVRLEICSPDSFSVTPGTVQG CPYQGVEECLRRLRDILSDVTPSHYTQNSGGEKACVYNLRDYGSVLSCLRKSKDIEIK EIPHLTLRVIETFSHCFVTGQWIPCRPEHLSEEDVDELIGKLPRTLLDRLLPFQLDGI RFGLQRGGRCLIADEMGLGKTLQAIAIAGCFMNEGCILVVCPAVLRYSWAEELERWLP CCLPSDIHLVFGHRDNPAYLKKCPRVVVISYTMLKHLRKSMLEQEWALLIVDESHHLR CSQKASESGEIQTVLDLAERVRRIVLLSGTPSLSRPYDIFHQINMLWPGLLGENKYKF AETYCAVNLGQSSQGFKDFSKGIRLEELNVLLSQTVMIRRLKEHVLGQLPPKRRQLIR LQLKRSDIASAKAAISFANGDDFEKNASKDTASENLEENHDGERFCNSRELSYQELGV AKLRGFREWFSIHPLIAKSDAIEELDPNSSSHKMIIFAHHHKVLDGIQEFICEKGIGF VRIDGTTLPKDRQSAVLSFQSSNGVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL MLQAEDRAHRRGQTSAVNIYIFCAKDTMDESYWQSLNKSLHRVSSTTNGKYDAMQEIE VEGISYLVTPDGSCKRKILRKAAPGKLSLDLEKMQDSECFLDMQLSEACADATVQMND LSVGINQNYGSYLHNDGGMVPDLLINKDLVCMEDKNELHPSAADIGICEVAPPLEMNK INKDRDPLPKGQTITADYGVPIQLLDDECCSNQVNSLRFEVSQYTGRIHLYSCIPGTD LRPRPLFQNFRPEEIESEDALTSDNKETVSKYFKDNPAYRHALWVFVNDWNKLRPIEQ RKLHGKPLQLPLSVELWYLKESINHDRGGLLKGGSKRRTTPLCEISISLPPNAVWKKV HLRGSCRKKEREYTQGWTLTDEPLCKLCQKPCKGRSAKTPEYFEDLFCNLGCYEEYRL RTSNRSIRQELFQIEHGICSNCQLDCHQLVKHLKPLSSERRREYIAKVAPKIASQKSL YVNRDKLLVLFPNYCRILCHRKLCNYGFEFFMQRSLLDIQY" gene complement(20273506..20283385) /locus_tag="TCM_014153" /note="dbxref CacaoGD:Thecc1EG014153" mRNA complement(join(20273506..20274405,20274518..20274594, 20274728..20275052,20275136..20275246,20275639..20275728, 20275888..20275992,20276564..20277652,20278178..20279992, 20280462..20281778,20282812..20283385)) /locus_tag="TCM_014153" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene26074" /inference="similar to AA sequence:Phytozome:GSVIVT01007917001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc75t1" mRNA complement(join(20273687..20275246,20275639..20275728, 20275888..20275992,20276564..20277652,20278178..20279992, 20280462..20281778,20282812..20283201)) /locus_tag="TCM_014153" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate-protein:2:frave:gene26074" /inference="similar to AA sequence:Phytozome:GSVIVT01007917001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc120t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc75t1" mRNA complement(join(20273687..20274405,20275558..20275728, 20275888..20275992,20276564..20277652,20278178..20279992, 20280462..20281778,20282812..20283201)) /locus_tag="TCM_014153" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene26074" /inference="similar to AA sequence:Phytozome:GSVIVT01007917001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc120t8; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc75t1" mRNA complement(join(20273687..20274405,20275136..20275246, 20275639..20275728,20275888..20275992,20276564..20277652, 20278178..20279992,20280462..20281778,20282812..20283168)) /locus_tag="TCM_014153" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene26074" /inference="similar to AA sequence:Phytozome:GSVIVT01007917001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc122t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc75t1" mRNA complement(join(20273687..20275052,20275136..20275246, 20275639..20275728,20275888..20275992,20276564..20277652, 20278178..20279992,20280462..20281778,20282812..20283168)) /locus_tag="TCM_014153" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene26074" /inference="similar to AA sequence:Phytozome:GSVIVT01007917001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc122t8; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc75t1; inference alignment:Newbler:10:TSA:cgbaP2_g04326t00001_C2" mRNA complement(join(20273687..20274405,20275887..20275992, 20276564..20277652,20278178..20279992,20280462..20281778, 20282812..20283168)) /locus_tag="TCM_014153" /product="Uncharacterized protein isoform 8" /inference="alignment:exonerate-protein:2:frave:gene26074" /inference="similar to AA sequence:Phytozome:GSVIVT01007917001" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc121t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc75t1" CDS complement(join(20274343..20274405,20275136..20275246, 20275639..20275728,20275888..20275992,20276564..20277652, 20278178..20279992,20280462..20281778,20282812..20282874)) /locus_tag="TCM_014153" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY21981.1" /db_xref="Phytozome:GSVIVT01007917001" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2W5" /translation="MMENSEEAVDDQGSGWLEVKKKHRSSSKFSVQSGVGGFSAKNAN NLIRGQPSSYEKGGIVHGKCRSQLQTSGRNSDVHSRGGLAKSTAESNEDKKDLCYLDK CVVKQDHEDPMTPSFFVKNSNGSCADNQKILSKDKPHIVHKIKWGDLEDDVLVAHHET NIGAEIKFGDIGDDNVRGCRKHDNTCNSLSCSSCTKIQENTVEASMDVDSHSCQISPL TPKDEIMEETFKEACEISSEALEAQTDNDKVISEDDGYKEIHTEHIKPINDNQVDSSF LSCQDSGPAAILEVPDVMLEVGKPKISEASLVDGGSSTKMVSQGGVLLPPENSGPETL TESIMTDCIQDGRIPGDLSKAQIITAFGEGDAGESKERFRERLWCFLFENLNRAVDEL YLLCELECDLEQMKEAILVLEEAASDFKELTTRVEEFENVKKSSSQVVDGVPITLKSD HRRPHALSWEVRRMTTSPHRAEILSSSLEAFKKIQQERAGRRPGDSKKSLGQDRSNRA STSGDNSRKSIMPSDVTSSDKESGIKSRKLGGGSDLTQGNLHGEKRNIESGKSSKLYS VQNGRDPPKKYISSDVASSRPLLKDYSAASGSGKSKREYLGSETEKLLPRKDKTLTEN IVEKNSKSVDHIKRQIPSEKDKDRRNTTSWKSMDAWKEKRNWEDILSSPFRVSYRVSH SPNVGKKSAERVRILHEKLMSPEKKRKTALDLKKEAEEKHARALRIRSELENERVQKL QRTSEKLIRVNEWQAVRTMKLREGMHARQQRSESRHEAFLAEVVRRAGDESSKVNEVR FITSLNEENKKLMLRQKLQDSELRRAEKLQVMKTKQKEDMAREEAVLERRKLIEAEKL QRLAETQRKKEEAQIRREEERKASSAAREARAIEQLRRREERAKAQQEEAELLAQKLA ERLSESEQRRKFYLEQIRERASMDFRDQSSPLLRRSVNKESQGRSTPTNNSDDCQANG SVILGNSALATGNGALQHSLKRRIKRIRQRLMALKFEFSEPPAAPENTGIGYRTTVGT ARAKIGRWLQELQKLRQARKEGASSIGLITAEMVKFLEGKEPELQASRQAGLLDFIAS ALPASHTSKPEACQVTIHLLKLLRVVLSTPVNRSYFLAQNLLPPMIPMLSAALENYIK IAASLNLPGSTNSLSCKTLLENFESVSEVLDGFLWTVSAIIGHISSDERQLQMRDGLL ELLIAYQVIHRLRDLFALYDRPQVEGSPFPSSILLSIHLLVVLTSSPGNSSINWESLP IEMELGNESQETKIAATPDCGCSFVNSNTGDDRPPLSSLNGSVVAPLSDVPEDRPLDE SCRINKNDNLVLIGKDVERKTTDGSVQLNNVSTARIDGTDVSPKNLVEQKEEKLVIIP SEEKLNENISSLKQPLAFLLSTISETGLVSLPSLLTSVLLQANNRLSSDQVSNALPSN FEEVATGVLKVLNNLALLDITFMQRMLARPDLKMEFFHLMSFLLSYCTSKWKAANDQI GLLLLESMLLLGYFALFHPGNQAVLRWGKSPTILHKQMLCRNLLQFMKILIIITDH" CDS complement(join(20274343..20274405,20274518..20274594, 20274728..20275052,20275136..20275246,20275639..20275728, 20275888..20275992,20276564..20277652,20278178..20279992, 20280462..20281778,20282812..20282874)) /locus_tag="TCM_014153" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY21980.1" /db_xref="Phytozome:GSVIVT01007917001" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2W5" /translation="MMENSEEAVDDQGSGWLEVKKKHRSSSKFSVQSGVGGFSAKNAN NLIRGQPSSYEKGGIVHGKCRSQLQTSGRNSDVHSRGGLAKSTAESNEDKKDLCYLDK CVVKQDHEDPMTPSFFVKNSNGSCADNQKILSKDKPHIVHKIKWGDLEDDVLVAHHET NIGAEIKFGDIGDDNVRGCRKHDNTCNSLSCSSCTKIQENTVEASMDVDSHSCQISPL TPKDEIMEETFKEACEISSEALEAQTDNDKVISEDDGYKEIHTEHIKPINDNQVDSSF LSCQDSGPAAILEVPDVMLEVGKPKISEASLVDGGSSTKMVSQGGVLLPPENSGPETL TESIMTDCIQDGRIPGDLSKAQIITAFGEGDAGESKERFRERLWCFLFENLNRAVDEL YLLCELECDLEQMKEAILVLEEAASDFKELTTRVEEFENVKKSSSQVVDGVPITLKSD HRRPHALSWEVRRMTTSPHRAEILSSSLEAFKKIQQERAGRRPGDSKKSLGQDRSNRA STSGDNSRKSIMPSDVTSSDKESGIKSRKLGGGSDLTQGNLHGEKRNIESGKSSKLYS VQNGRDPPKKYISSDVASSRPLLKDYSAASGSGKSKREYLGSETEKLLPRKDKTLTEN IVEKNSKSVDHIKRQIPSEKDKDRRNTTSWKSMDAWKEKRNWEDILSSPFRVSYRVSH SPNVGKKSAERVRILHEKLMSPEKKRKTALDLKKEAEEKHARALRIRSELENERVQKL QRTSEKLIRVNEWQAVRTMKLREGMHARQQRSESRHEAFLAEVVRRAGDESSKVNEVR FITSLNEENKKLMLRQKLQDSELRRAEKLQVMKTKQKEDMAREEAVLERRKLIEAEKL QRLAETQRKKEEAQIRREEERKASSAAREARAIEQLRRREERAKAQQEEAELLAQKLA ERLSESEQRRKFYLEQIRERASMDFRDQSSPLLRRSVNKESQGRSTPTNNSDDCQANG SVILGNSALATGNGALQHSLKRRIKRIRQRLMALKFEFSEPPAAPENTGIGYRTTVGT ARAKIGRWLQELQKLRQARKEGASSIGLITAEMVKFLEGKEPELQASRQAGLLDFIAS ALPASHTSKPEACQVTIHLLKLLRVVLSTPVNRSYFLAQNLLPPMIPMLSAALENYIK IAASLNLPGSTNSLSCKTLLENFESVSEVLDGFLWTVSAIIGHISSDERQLQMRDGLL ELLIAYQVIHRLRDLFALYDRPQVEGSPFPSSILLSIHLLVVLTSSPGNSSINWESLP IEMELGNESQETKIAATPDCGCSFVNSNTGDDRPPLSSLNGSVVAPLSDVPEDRPLDE SCRINKNDNLVLIGKDVERKTTDGSVQLNNVSTARIDGTDVSPKNLVEQKEEKLVIIP SEEKLNENISSLKQPLAFLLSTISETGLVSLPSLLTSVLLQANNRLSSDQVSNALPSN FEEVATGVLKVLNNLALLDITFMQRMLARPDLKMEFFHLMSFLLSYCTSKWKAANDQI GLLLLESMLLLGYFALFHPGNQAVLRWGKSPTILHKVCDLPFVFFSDPDLMPVLAGTL LAACYGCEQNKGVVQQELSMDMLLSLLRSCRNILPTVRSNSNAENLSGEDSSECNQQG DFKRSHGDIPIRSSRNNARSTRVSGGKGDFLAASLTEQSISFQLGSPIWVVKCEQMLC RNLLQFMKILIIITDH" CDS complement(join(20274343..20274405,20275558..20275728, 20275888..20275992,20276564..20277652,20278178..20279992, 20280462..20281778,20282812..20282874)) /locus_tag="TCM_014153" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY21983.1" /db_xref="Phytozome:GSVIVT01007917001" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2W5" /translation="MMENSEEAVDDQGSGWLEVKKKHRSSSKFSVQSGVGGFSAKNAN NLIRGQPSSYEKGGIVHGKCRSQLQTSGRNSDVHSRGGLAKSTAESNEDKKDLCYLDK CVVKQDHEDPMTPSFFVKNSNGSCADNQKILSKDKPHIVHKIKWGDLEDDVLVAHHET NIGAEIKFGDIGDDNVRGCRKHDNTCNSLSCSSCTKIQENTVEASMDVDSHSCQISPL TPKDEIMEETFKEACEISSEALEAQTDNDKVISEDDGYKEIHTEHIKPINDNQVDSSF LSCQDSGPAAILEVPDVMLEVGKPKISEASLVDGGSSTKMVSQGGVLLPPENSGPETL TESIMTDCIQDGRIPGDLSKAQIITAFGEGDAGESKERFRERLWCFLFENLNRAVDEL YLLCELECDLEQMKEAILVLEEAASDFKELTTRVEEFENVKKSSSQVVDGVPITLKSD HRRPHALSWEVRRMTTSPHRAEILSSSLEAFKKIQQERAGRRPGDSKKSLGQDRSNRA STSGDNSRKSIMPSDVTSSDKESGIKSRKLGGGSDLTQGNLHGEKRNIESGKSSKLYS VQNGRDPPKKYISSDVASSRPLLKDYSAASGSGKSKREYLGSETEKLLPRKDKTLTEN IVEKNSKSVDHIKRQIPSEKDKDRRNTTSWKSMDAWKEKRNWEDILSSPFRVSYRVSH SPNVGKKSAERVRILHEKLMSPEKKRKTALDLKKEAEEKHARALRIRSELENERVQKL QRTSEKLIRVNEWQAVRTMKLREGMHARQQRSESRHEAFLAEVVRRAGDESSKVNEVR FITSLNEENKKLMLRQKLQDSELRRAEKLQVMKTKQKEDMAREEAVLERRKLIEAEKL QRLAETQRKKEEAQIRREEERKASSAAREARAIEQLRRREERAKAQQEEAELLAQKLA ERLSESEQRRKFYLEQIRERASMDFRDQSSPLLRRSVNKESQGRSTPTNNSDDCQANG SVILGNSALATGNGALQHSLKRRIKRIRQRLMALKFEFSEPPAAPENTGIGYRTTVGT ARAKIGRWLQELQKLRQARKEGASSIGLITAEMVKFLEGKEPELQASRQAGLLDFIAS ALPASHTSKPEACQVTIHLLKLLRVVLSTPVNRSYFLAQNLLPPMIPMLSAALENYIK IAASLNLPGSTNSLSCKTLLENFESVSEVLDGFLWTVSAIIGHISSDERQLQMRDGLL ELLIAYQVIHRLRDLFALYDRPQVEGSPFPSSILLSIHLLVVLTSSPGNSSINWESLP IEMELGNESQETKIAATPDCGCSFVNSNTGDDRPPLSSLNGSVVAPLSDVPEDRPLDE SCRINKNDNLVLIGKDVERKTTDGSVQLNNVSTARIDGTDVSPKNLVEQKEEKLVIIP SEEKLNENISSLKQPLAFLLSTISETGLVSLPSLLTSVLLQANNRLSSDQVSNALPSN FEEVATGVLKVLNNLALLDITFMQRMLARPDLKMEFFHLMSFLLSYCTSKWKAANDQV VFCTSLFLMHAEMARVIQMTCINSKLQMLCRNLLQFMKILIIITDH" CDS complement(join(20274350..20274405,20275887..20275992, 20276564..20277652,20278178..20279992,20280462..20281778, 20282812..20282874)) /locus_tag="TCM_014153" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 8" /protein_id="EOY21987.1" /db_xref="Phytozome:GSVIVT01007917001" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2W5" /translation="MMENSEEAVDDQGSGWLEVKKKHRSSSKFSVQSGVGGFSAKNAN NLIRGQPSSYEKGGIVHGKCRSQLQTSGRNSDVHSRGGLAKSTAESNEDKKDLCYLDK CVVKQDHEDPMTPSFFVKNSNGSCADNQKILSKDKPHIVHKIKWGDLEDDVLVAHHET NIGAEIKFGDIGDDNVRGCRKHDNTCNSLSCSSCTKIQENTVEASMDVDSHSCQISPL TPKDEIMEETFKEACEISSEALEAQTDNDKVISEDDGYKEIHTEHIKPINDNQVDSSF LSCQDSGPAAILEVPDVMLEVGKPKISEASLVDGGSSTKMVSQGGVLLPPENSGPETL TESIMTDCIQDGRIPGDLSKAQIITAFGEGDAGESKERFRERLWCFLFENLNRAVDEL YLLCELECDLEQMKEAILVLEEAASDFKELTTRVEEFENVKKSSSQVVDGVPITLKSD HRRPHALSWEVRRMTTSPHRAEILSSSLEAFKKIQQERAGRRPGDSKKSLGQDRSNRA STSGDNSRKSIMPSDVTSSDKESGIKSRKLGGGSDLTQGNLHGEKRNIESGKSSKLYS VQNGRDPPKKYISSDVASSRPLLKDYSAASGSGKSKREYLGSETEKLLPRKDKTLTEN IVEKNSKSVDHIKRQIPSEKDKDRRNTTSWKSMDAWKEKRNWEDILSSPFRVSYRVSH SPNVGKKSAERVRILHEKLMSPEKKRKTALDLKKEAEEKHARALRIRSELENERVQKL QRTSEKLIRVNEWQAVRTMKLREGMHARQQRSESRHEAFLAEVVRRAGDESSKVNEVR FITSLNEENKKLMLRQKLQDSELRRAEKLQVMKTKQKEDMAREEAVLERRKLIEAEKL QRLAETQRKKEEAQIRREEERKASSAAREARAIEQLRRREERAKAQQEEAELLAQKLA ERLSESEQRRKFYLEQIRERASMDFRDQSSPLLRRSVNKESQGRSTPTNNSDDCQANG SVILGNSALATGNGALQHSLKRRIKRIRQRLMALKFEFSEPPAAPENTGIGYRTTVGT ARAKIGRWLQELQKLRQARKEGASSIGLITAEMVKFLEGKEPELQASRQAGLLDFIAS ALPASHTSKPEACQVTIHLLKLLRVVLSTPVNRSYFLAQNLLPPMIPMLSAALENYIK IAASLNLPGSTNSLSCKTLLENFESVSEVLDGFLWTVSAIIGHISSDERQLQMRDGLL ELLIAYQVIHRLRDLFALYDRPQVEGSPFPSSILLSIHLLVVLTSSPGNSSINWESLP IEMELGNESQETKIAATPDCGCSFVNSNTGDDRPPLSSLNGSVVAPLSDVPEDRPLDE SCRINKNDNLVLIGKDVERKTTDGSVQLNNVSTARIDGTDVSPKNLVEQKEEKLVIIP SEEKLNENISSLKQPLAFLLSTISETGLVSLPSLLTSVLLQANNRLSSDQVSNALPSN FEEVATGVLKVLNNLALLDITFMQRMLADALQKSATVYEDFDHNH" CDS complement(join(20274519..20275052,20275136..20275246, 20275639..20275728,20275888..20275992,20276564..20277652, 20278178..20279992,20280462..20281778,20282812..20282874)) /locus_tag="TCM_014153" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY21982.1" /db_xref="Phytozome:GSVIVT01007917001" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2W5" /translation="MMENSEEAVDDQGSGWLEVKKKHRSSSKFSVQSGVGGFSAKNAN NLIRGQPSSYEKGGIVHGKCRSQLQTSGRNSDVHSRGGLAKSTAESNEDKKDLCYLDK CVVKQDHEDPMTPSFFVKNSNGSCADNQKILSKDKPHIVHKIKWGDLEDDVLVAHHET NIGAEIKFGDIGDDNVRGCRKHDNTCNSLSCSSCTKIQENTVEASMDVDSHSCQISPL TPKDEIMEETFKEACEISSEALEAQTDNDKVISEDDGYKEIHTEHIKPINDNQVDSSF LSCQDSGPAAILEVPDVMLEVGKPKISEASLVDGGSSTKMVSQGGVLLPPENSGPETL TESIMTDCIQDGRIPGDLSKAQIITAFGEGDAGESKERFRERLWCFLFENLNRAVDEL YLLCELECDLEQMKEAILVLEEAASDFKELTTRVEEFENVKKSSSQVVDGVPITLKSD HRRPHALSWEVRRMTTSPHRAEILSSSLEAFKKIQQERAGRRPGDSKKSLGQDRSNRA STSGDNSRKSIMPSDVTSSDKESGIKSRKLGGGSDLTQGNLHGEKRNIESGKSSKLYS VQNGRDPPKKYISSDVASSRPLLKDYSAASGSGKSKREYLGSETEKLLPRKDKTLTEN IVEKNSKSVDHIKRQIPSEKDKDRRNTTSWKSMDAWKEKRNWEDILSSPFRVSYRVSH SPNVGKKSAERVRILHEKLMSPEKKRKTALDLKKEAEEKHARALRIRSELENERVQKL QRTSEKLIRVNEWQAVRTMKLREGMHARQQRSESRHEAFLAEVVRRAGDESSKVNEVR FITSLNEENKKLMLRQKLQDSELRRAEKLQVMKTKQKEDMAREEAVLERRKLIEAEKL QRLAETQRKKEEAQIRREEERKASSAAREARAIEQLRRREERAKAQQEEAELLAQKLA ERLSESEQRRKFYLEQIRERASMDFRDQSSPLLRRSVNKESQGRSTPTNNSDDCQANG SVILGNSALATGNGALQHSLKRRIKRIRQRLMALKFEFSEPPAAPENTGIGYRTTVGT ARAKIGRWLQELQKLRQARKEGASSIGLITAEMVKFLEGKEPELQASRQAGLLDFIAS ALPASHTSKPEACQVTIHLLKLLRVVLSTPVNRSYFLAQNLLPPMIPMLSAALENYIK IAASLNLPGSTNSLSCKTLLENFESVSEVLDGFLWTVSAIIGHISSDERQLQMRDGLL ELLIAYQVIHRLRDLFALYDRPQVEGSPFPSSILLSIHLLVVLTSSPGNSSINWESLP IEMELGNESQETKIAATPDCGCSFVNSNTGDDRPPLSSLNGSVVAPLSDVPEDRPLDE SCRINKNDNLVLIGKDVERKTTDGSVQLNNVSTARIDGTDVSPKNLVEQKEEKLVIIP SEEKLNENISSLKQPLAFLLSTISETGLVSLPSLLTSVLLQANNRLSSDQVSNALPSN FEEVATGVLKVLNNLALLDITFMQRMLARPDLKMEFFHLMSFLLSYCTSKWKAANDQI GLLLLESMLLLGYFALFHPGNQAVLRWGKSPTILHKVCDLPFVFFSDPDLMPVLAGTL LAACYGCEQNKGVVQQELSMDMLLSLLRSCRNILPTVRSNSNAENLSGEDSSECNQQG DFKRSHGDIPIRSSRNNARSTRVSGGKGGALGNTIRVGKMRNQRDSRLTKTCEETIIR QNLPVLGTSIMLYCRFPSSFIDRAEHFFSVGITNMGGEV" mRNA complement(join(20275000..20275023,20275136..20275728, 20275888..20275992,20276564..20277652,20278178..20279992, 20280462..20281778,20282812..20283168)) /locus_tag="TCM_014153" /product="Uncharacterized protein isoform 7" /inference="alignment:exonerate-protein:2:frave:gene26074" /inference="similar to AA sequence:Phytozome:GSVIVT01007917001" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc121t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc75t1" CDS complement(join(20275010..20275246,20275639..20275728, 20275888..20275992,20276564..20277652,20278178..20279992, 20280462..20281778,20282812..20282874)) /locus_tag="TCM_014153" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY21984.1" /db_xref="Phytozome:GSVIVT01007917001" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2W5" /translation="MMENSEEAVDDQGSGWLEVKKKHRSSSKFSVQSGVGGFSAKNAN NLIRGQPSSYEKGGIVHGKCRSQLQTSGRNSDVHSRGGLAKSTAESNEDKKDLCYLDK CVVKQDHEDPMTPSFFVKNSNGSCADNQKILSKDKPHIVHKIKWGDLEDDVLVAHHET NIGAEIKFGDIGDDNVRGCRKHDNTCNSLSCSSCTKIQENTVEASMDVDSHSCQISPL TPKDEIMEETFKEACEISSEALEAQTDNDKVISEDDGYKEIHTEHIKPINDNQVDSSF LSCQDSGPAAILEVPDVMLEVGKPKISEASLVDGGSSTKMVSQGGVLLPPENSGPETL TESIMTDCIQDGRIPGDLSKAQIITAFGEGDAGESKERFRERLWCFLFENLNRAVDEL YLLCELECDLEQMKEAILVLEEAASDFKELTTRVEEFENVKKSSSQVVDGVPITLKSD HRRPHALSWEVRRMTTSPHRAEILSSSLEAFKKIQQERAGRRPGDSKKSLGQDRSNRA STSGDNSRKSIMPSDVTSSDKESGIKSRKLGGGSDLTQGNLHGEKRNIESGKSSKLYS VQNGRDPPKKYISSDVASSRPLLKDYSAASGSGKSKREYLGSETEKLLPRKDKTLTEN IVEKNSKSVDHIKRQIPSEKDKDRRNTTSWKSMDAWKEKRNWEDILSSPFRVSYRVSH SPNVGKKSAERVRILHEKLMSPEKKRKTALDLKKEAEEKHARALRIRSELENERVQKL QRTSEKLIRVNEWQAVRTMKLREGMHARQQRSESRHEAFLAEVVRRAGDESSKVNEVR FITSLNEENKKLMLRQKLQDSELRRAEKLQVMKTKQKEDMAREEAVLERRKLIEAEKL QRLAETQRKKEEAQIRREEERKASSAAREARAIEQLRRREERAKAQQEEAELLAQKLA ERLSESEQRRKFYLEQIRERASMDFRDQSSPLLRRSVNKESQGRSTPTNNSDDCQANG SVILGNSALATGNGALQHSLKRRIKRIRQRLMALKFEFSEPPAAPENTGIGYRTTVGT ARAKIGRWLQELQKLRQARKEGASSIGLITAEMVKFLEGKEPELQASRQAGLLDFIAS ALPASHTSKPEACQVTIHLLKLLRVVLSTPVNRSYFLAQNLLPPMIPMLSAALENYIK IAASLNLPGSTNSLSCKTLLENFESVSEVLDGFLWTVSAIIGHISSDERQLQMRDGLL ELLIAYQVIHRLRDLFALYDRPQVEGSPFPSSILLSIHLLVVLTSSPGNSSINWESLP IEMELGNESQETKIAATPDCGCSFVNSNTGDDRPPLSSLNGSVVAPLSDVPEDRPLDE SCRINKNDNLVLIGKDVERKTTDGSVQLNNVSTARIDGTDVSPKNLVEQKEEKLVIIP SEEKLNENISSLKQPLAFLLSTISETGLVSLPSLLTSVLLQANNRLSSDQVSNALPSN FEEVATGVLKVLNNLALLDITFMQRMLARPDLKMEFFHLMSFLLSYCTSKWKAANDQI GLLLLESMLLLGYFALFHPGNQAVLRWGKSPTILHKVSESYIVLISHFFRCYLRKLTV ELEGHRCVICLSCSSVTQI" mRNA complement(join(<20275225..20275257,20275575..20275728, 20275888..20275992,20276564..20277652,20278178..20279992, 20280462..20281778,20282812..20283201)) /locus_tag="TCM_014153" /product="Uncharacterized protein isoform 6" /inference="alignment:exonerate-protein:2:frave:gene26074" /inference="similar to AA sequence:Phytozome:GSVIVT01007917001" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc75t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc75t1" CDS complement(join(<20275226..20275257,20275575..20275728, 20275888..20275992,20276564..20277652,20278178..20279992, 20280462..20281778,20282812..20282874)) /locus_tag="TCM_014153" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY21985.1" /db_xref="Phytozome:GSVIVT01007917001" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2W5" /translation="MMENSEEAVDDQGSGWLEVKKKHRSSSKFSVQSGVGGFSAKNAN NLIRGQPSSYEKGGIVHGKCRSQLQTSGRNSDVHSRGGLAKSTAESNEDKKDLCYLDK CVVKQDHEDPMTPSFFVKNSNGSCADNQKILSKDKPHIVHKIKWGDLEDDVLVAHHET NIGAEIKFGDIGDDNVRGCRKHDNTCNSLSCSSCTKIQENTVEASMDVDSHSCQISPL TPKDEIMEETFKEACEISSEALEAQTDNDKVISEDDGYKEIHTEHIKPINDNQVDSSF LSCQDSGPAAILEVPDVMLEVGKPKISEASLVDGGSSTKMVSQGGVLLPPENSGPETL TESIMTDCIQDGRIPGDLSKAQIITAFGEGDAGESKERFRERLWCFLFENLNRAVDEL YLLCELECDLEQMKEAILVLEEAASDFKELTTRVEEFENVKKSSSQVVDGVPITLKSD HRRPHALSWEVRRMTTSPHRAEILSSSLEAFKKIQQERAGRRPGDSKKSLGQDRSNRA STSGDNSRKSIMPSDVTSSDKESGIKSRKLGGGSDLTQGNLHGEKRNIESGKSSKLYS VQNGRDPPKKYISSDVASSRPLLKDYSAASGSGKSKREYLGSETEKLLPRKDKTLTEN IVEKNSKSVDHIKRQIPSEKDKDRRNTTSWKSMDAWKEKRNWEDILSSPFRVSYRVSH SPNVGKKSAERVRILHEKLMSPEKKRKTALDLKKEAEEKHARALRIRSELENERVQKL QRTSEKLIRVNEWQAVRTMKLREGMHARQQRSESRHEAFLAEVVRRAGDESSKVNEVR FITSLNEENKKLMLRQKLQDSELRRAEKLQVMKTKQKEDMAREEAVLERRKLIEAEKL QRLAETQRKKEEAQIRREEERKASSAAREARAIEQLRRREERAKAQQEEAELLAQKLA ERLSESEQRRKFYLEQIRERASMDFRDQSSPLLRRSVNKESQGRSTPTNNSDDCQANG SVILGNSALATGNGALQHSLKRRIKRIRQRLMALKFEFSEPPAAPENTGIGYRTTVGT ARAKIGRWLQELQKLRQARKEGASSIGLITAEMVKFLEGKEPELQASRQAGLLDFIAS ALPASHTSKPEACQVTIHLLKLLRVVLSTPVNRSYFLAQNLLPPMIPMLSAALENYIK IAASLNLPGSTNSLSCKTLLENFESVSEVLDGFLWTVSAIIGHISSDERQLQMRDGLL ELLIAYQVIHRLRDLFALYDRPQVEGSPFPSSILLSIHLLVVLTSSPGNSSINWESLP IEMELGNESQETKIAATPDCGCSFVNSNTGDDRPPLSSLNGSVVAPLSDVPEDRPLDE SCRINKNDNLVLIGKDVERKTTDGSVQLNNVSTARIDGTDVSPKNLVEQKEEKLVIIP SEEKLNENISSLKQPLAFLLSTISETGLVSLPSLLTSVLLQANNRLSSDQVSNALPSN FEEVATGVLKVLNNLALLDITFMQRMLARPDLKMEFFHLMSFLLSYCTSKWKAANDQV VFCTSLFLMHAEMARVIQMTFLSQIGLLLLE" mobile_element 20275434..20275531 /note="source:scaffold_1_CACTA_0016 6346 6438" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(20275528..20275728,20275888..20275992, 20276564..20277652,20278178..20279992,20280462..20281778, 20282812..20282874)) /locus_tag="TCM_014153" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 7" /protein_id="EOY21986.1" /db_xref="Phytozome:GSVIVT01007917001" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2W5" /translation="MMENSEEAVDDQGSGWLEVKKKHRSSSKFSVQSGVGGFSAKNAN NLIRGQPSSYEKGGIVHGKCRSQLQTSGRNSDVHSRGGLAKSTAESNEDKKDLCYLDK CVVKQDHEDPMTPSFFVKNSNGSCADNQKILSKDKPHIVHKIKWGDLEDDVLVAHHET NIGAEIKFGDIGDDNVRGCRKHDNTCNSLSCSSCTKIQENTVEASMDVDSHSCQISPL TPKDEIMEETFKEACEISSEALEAQTDNDKVISEDDGYKEIHTEHIKPINDNQVDSSF LSCQDSGPAAILEVPDVMLEVGKPKISEASLVDGGSSTKMVSQGGVLLPPENSGPETL TESIMTDCIQDGRIPGDLSKAQIITAFGEGDAGESKERFRERLWCFLFENLNRAVDEL YLLCELECDLEQMKEAILVLEEAASDFKELTTRVEEFENVKKSSSQVVDGVPITLKSD HRRPHALSWEVRRMTTSPHRAEILSSSLEAFKKIQQERAGRRPGDSKKSLGQDRSNRA STSGDNSRKSIMPSDVTSSDKESGIKSRKLGGGSDLTQGNLHGEKRNIESGKSSKLYS VQNGRDPPKKYISSDVASSRPLLKDYSAASGSGKSKREYLGSETEKLLPRKDKTLTEN IVEKNSKSVDHIKRQIPSEKDKDRRNTTSWKSMDAWKEKRNWEDILSSPFRVSYRVSH SPNVGKKSAERVRILHEKLMSPEKKRKTALDLKKEAEEKHARALRIRSELENERVQKL QRTSEKLIRVNEWQAVRTMKLREGMHARQQRSESRHEAFLAEVVRRAGDESSKVNEVR FITSLNEENKKLMLRQKLQDSELRRAEKLQVMKTKQKEDMAREEAVLERRKLIEAEKL QRLAETQRKKEEAQIRREEERKASSAAREARAIEQLRRREERAKAQQEEAELLAQKLA ERLSESEQRRKFYLEQIRERASMDFRDQSSPLLRRSVNKESQGRSTPTNNSDDCQANG SVILGNSALATGNGALQHSLKRRIKRIRQRLMALKFEFSEPPAAPENTGIGYRTTVGT ARAKIGRWLQELQKLRQARKEGASSIGLITAEMVKFLEGKEPELQASRQAGLLDFIAS ALPASHTSKPEACQVTIHLLKLLRVVLSTPVNRSYFLAQNLLPPMIPMLSAALENYIK IAASLNLPGSTNSLSCKTLLENFESVSEVLDGFLWTVSAIIGHISSDERQLQMRDGLL ELLIAYQVIHRLRDLFALYDRPQVEGSPFPSSILLSIHLLVVLTSSPGNSSINWESLP IEMELGNESQETKIAATPDCGCSFVNSNTGDDRPPLSSLNGSVVAPLSDVPEDRPLDE SCRINKNDNLVLIGKDVERKTTDGSVQLNNVSTARIDGTDVSPKNLVEQKEEKLVIIP SEEKLNENISSLKQPLAFLLSTISETGLVSLPSLLTSVLLQANNRLSSDQVSNALPSN FEEVATGVLKVLNNLALLDITFMQRMLARPDLKMEFFHLMSFLLSYCTSKWKAANDQV VFCTSLFLMHAEMARVIQMTCINSKLVDDIHKPYV" mobile_element complement(20284413..20284521) /note="source:scaffold_8_CACTA_0855 3172 3288" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20285831..20285933) /note="source:INTACT897F_F376_scaffold_6-int 684 793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20286896..20287365) /note="source:MITE_Unknow_3_4 1 480" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(20287364..20287473) /note="source:scaffold_4_CACTA_0511 7066 7182" /mobile_element_type="transposon:TIR/CACTA" gene 20288866..20294944 /locus_tag="TCM_014154" /note="dbxref CacaoGD:Thecc1EG014154" mRNA join(20288866..20289330,20290195..20290456, 20290589..20290625,20290743..20290926,20291416..20291564, 20291649..20291882,20292168..20292357,20292504..20292629, 20292833..20292932,20293869..20294468) /locus_tag="TCM_014154" /product="Glucuronidase 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m004015" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011586t1" /inference="similar to AA sequence:ricco:30138.m004015" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01518t00002" mRNA join(20288922..20289329,20290589..20290625, 20290743..20290926,20291416..20291564,20291649..20291882, 20292168..20292357,20292504..20292629,20292833..20292932, 20293869..20294435) /locus_tag="TCM_014154" /product="Glucuronidase 2 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30138.m004015" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011586t1" /inference="similar to AA sequence:ricco:30138.m004015" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc565t7; inference alignment:Newbler:10:TSA:cgbaL_g01518t00002" mRNA join(20289285..20289310,20290195..20290456, 20290589..20290625,20290743..20290926,20291416..20291564, 20291649..20291882,20292168..20292357,20292504..20292629, 20292833..20292932,20293869..20294944) /locus_tag="TCM_014154" /product="Glucuronidase 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m004015" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011586t1" /inference="similar to AA sequence:ricco:30138.m004015" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc565t12; alternateUTRof:Thecc1EG014154t1; inference alignment:Newbler:10:TSA:cgbaL_g01518t00002" CDS join(20290247..20290456,20290589..20290625, 20290743..20290926,20291416..20291564,20291649..20291882, 20292168..20292357,20292504..20292629,20292833..20292932, 20293869..20294255) /locus_tag="TCM_014154" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m004015; paralog of Thecc1EG011586t1" /codon_start=1 /product="Glucuronidase 2 isoform 1" /protein_id="EOY21988.1" /db_xref="TAIR:AT5G07830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FF10" /translation="MEFRLILFLFVASLPAILAEEISHGTIVVDGTTTVAQTDDNFIC ATIDWWPHDKCDYKQCPWHYTSAINLDLTHPFLAKAVQAFNRLRIRIGGSLQDQVLYN VGNLKSPCHPFRQMKDGLFGFSKGCLHMERWDQLNHFFNATGVMLTFSLNALHGRHKI RRSLWGGDWDSSNAQDFMKYTISKGYQIDSWEFGNELSGNGVGAHVLASQYGKDLIYL KKIINELYKGSQYKPSLVAPGGFFDQEWFVKLLQISGSSILDAMSHHIYNLGAGVDPK LISKILDPNHLSKVANTFSNLTHVIRRHGPWASAWVGESGGAYNSGGPHVSDTFVNSF WYLDQLGMASKYHTKVYCRQTLIGGNYGLLNATTYVPNPDYYSALLWHRLMGKVVLAV DSDASSFLRTYAHCSKGRAGVTLLLINLSKQTKFIMDVQNSINIKLAVKEENISPDSF THSLKKTFSWVGVKASDEPLLREEYHLTPKNGYLQSRTMVLNGVPLLTDAGNIPRLDP IRVNVMSPISLAPLSIAFIVFPNFDAPACG" CDS join(20290247..20290456,20290589..20290625, 20290743..20290926,20291416..20291564,20291649..20291882, 20292168..20292357,20292504..20292629,20292833..20292932, 20293869..20294255) /locus_tag="TCM_014154" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m004015; paralog of Thecc1EG011586t1" /codon_start=1 /product="Glucuronidase 2 isoform 1" /protein_id="EOY21989.1" /db_xref="TAIR:AT5G07830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FF10" /translation="MEFRLILFLFVASLPAILAEEISHGTIVVDGTTTVAQTDDNFIC ATIDWWPHDKCDYKQCPWHYTSAINLDLTHPFLAKAVQAFNRLRIRIGGSLQDQVLYN VGNLKSPCHPFRQMKDGLFGFSKGCLHMERWDQLNHFFNATGVMLTFSLNALHGRHKI RRSLWGGDWDSSNAQDFMKYTISKGYQIDSWEFGNELSGNGVGAHVLASQYGKDLIYL KKIINELYKGSQYKPSLVAPGGFFDQEWFVKLLQISGSSILDAMSHHIYNLGAGVDPK LISKILDPNHLSKVANTFSNLTHVIRRHGPWASAWVGESGGAYNSGGPHVSDTFVNSF WYLDQLGMASKYHTKVYCRQTLIGGNYGLLNATTYVPNPDYYSALLWHRLMGKVVLAV DSDASSFLRTYAHCSKGRAGVTLLLINLSKQTKFIMDVQNSINIKLAVKEENISPDSF THSLKKTFSWVGVKASDEPLLREEYHLTPKNGYLQSRTMVLNGVPLLTDAGNIPRLDP IRVNVMSPISLAPLSIAFIVFPNFDAPACG" CDS join(20290841..20290926,20291416..20291564, 20291649..20291882,20292168..20292357,20292504..20292629, 20292833..20292932,20293869..20294255) /locus_tag="TCM_014154" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30138.m004015; paralog of Thecc1EG011586t1" /codon_start=1 /product="Glucuronidase 2 isoform 3" /protein_id="EOY21990.1" /db_xref="TAIR:AT5G07830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FF10" /translation="MKDGLFGFSKGCLHMERWDQLNHFFNATGVMLTFSLNALHGRHK IRRSLWGGDWDSSNAQDFMKYTISKGYQIDSWEFGNELSGNGVGAHVLASQYGKDLIY LKKIINELYKGSQYKPSLVAPGGFFDQEWFVKLLQISGSSILDAMSHHIYNLGAGVDP KLISKILDPNHLSKVANTFSNLTHVIRRHGPWASAWVGESGGAYNSGGPHVSDTFVNS FWYLDQLGMASKYHTKVYCRQTLIGGNYGLLNATTYVPNPDYYSALLWHRLMGKVVLA VDSDASSFLRTYAHCSKGRAGVTLLLINLSKQTKFIMDVQNSINIKLAVKEENISPDS FTHSLKKTFSWVGVKASDEPLLREEYHLTPKNGYLQSRTMVLNGVPLLTDAGNIPRLD PIRVNVMSPISLAPLSIAFIVFPNFDAPACG" gene complement(20295618..20300041) /locus_tag="TCM_014156" /note="dbxref CacaoGD:Thecc1EG014156" mRNA complement(join(20295618..20296027,20296132..20296203, 20296460..20296531,20296631..20296702,20296835..20296915, 20297052..20297195,20297310..20297381,20297922..20297993, 20298737..20298808,20299101..20299248,20299798..20299912)) /locus_tag="TCM_014156" /product="Leucine-rich repeat (LRR) family protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G61240.2.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011584t1" /inference="similar to AA sequence:TAIR:AT5G61240.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08802t00001" mRNA complement(join(20295731..20296027,20296132..20296203, 20296460..20296531,20296631..20296702,20296835..20296915, 20297052..20297195,20297310..20297381,20297922..20297993, 20299101..20299248,20299798..20300041)) /locus_tag="TCM_014156" /product="Leucine-rich repeat family protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G61240.2.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011584t1" /inference="similar to AA sequence:TAIR:AT5G61240.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc216t2_C2; inference alignment:Newbler:10:TSA:cgbaB_g08802t00001" CDS complement(join(20295937..20296027,20296132..20296203, 20296460..20296531,20296631..20296702,20296835..20296915, 20297052..20297195,20297310..20297381,20297922..20297993, 20299101..20299248,20299798..20299882)) /locus_tag="TCM_014156" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011584t1" /codon_start=1 /product="Leucine-rich repeat family protein isoform 2" /protein_id="EOY21992.1" /db_xref="TAIR:AT5G61240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCW4" /translation="MASLWPIALICIFAFSLSIAHSKTLKRDVKALNEIKASLGWRVV YAWIGDDPCGDGDLPPWSGVTCSTQGDYRVVTELDLHNNKLTGPLPPQIGRLRRLRML NLRWNKLQDVLPPEIGELKRLTHLSLSFNNFKGEIPKELANLPELRYLYLQENRFVGR IPPELGTLQNLRHLDVGNNHLVGTIRELIRFEGGFPVLRNLYLNNNYLTGGIPAQLAN LTNLEILYLSYNKMSGAIPSALAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKELYIE GNGFRPGVNPIGPHKVLELSDTDFLV" CDS complement(join(20295937..20296027,20296132..20296203, 20296460..20296531,20296631..20296702,20296835..20296915, 20297052..20297195,20297310..20297381,20297922..20297993, 20298737..20298808,20299101..20299248,20299798..20299882)) /locus_tag="TCM_014156" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011584t1" /codon_start=1 /product="Leucine-rich repeat (LRR) family protein isoform 1" /protein_id="EOY21991.1" /db_xref="TAIR:AT5G61240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K217" /translation="MASLWPIALICIFAFSLSIAHSKTLKRDVKALNEIKASLGWRVV YAWIGDDPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRL DLHNNKLTGPLPPQIGRLRRLRMLNLRWNKLQDVLPPEIGELKRLTHLSLSFNNFKGE IPKELANLPELRYLYLQENRFVGRIPPELGTLQNLRHLDVGNNHLVGTIRELIRFEGG FPVLRNLYLNNNYLTGGIPAQLANLTNLEILYLSYNKMSGAIPSALAHIPKLTYLYLD HNQFSGRIPDAFYKHPFLKELYIEGNGFRPGVNPIGPHKVLELSDTDFLV" gene 20300290..20301202 /locus_tag="TCM_014157" /note="dbxref CacaoGD:Thecc1EG014157" mRNA 20300290..20301202 /locus_tag="TCM_014157" /product="C6orf149, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042671" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400042671" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g15241t00001" CDS 20300505..20300789 /locus_tag="TCM_014157" /codon_start=1 /product="C6orf149, putative" /protein_id="EOY21993.1" /db_xref="Phytozome:PGSC0003DMP400042671" /db_xref="TAIR:AT5G61220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLS6" /translation="MAASGVASPTRTEVLQLYRSLLRVARQFCDYNIREYTKRRTIDA FRDNKNLTDPSQLFAAFSDGKAQLEVAKRQAVVYSLYAPKVKSIMDIKPS" gene complement(20303070..20306786) /locus_tag="TCM_014158" /note="dbxref CacaoGD:Thecc1EG014158" mRNA complement(join(20303070..20303363,20303589..20303686, 20303852..20303982,20304159..20304252,20305322..20305879, 20306648..20306786)) /locus_tag="TCM_014158" /product="Synaptosomal associated protein, putative" /inference="alignment:exonerate- protein:2:ricco:30138.m004013" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011581t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s03450.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08682t00001" CDS complement(join(20303264..20303363,20303589..20303686, 20303852..20303982,20304159..20304252,20305322..20305816)) /locus_tag="TCM_014158" /note="paralog of Thecc1EG011581t2" /codon_start=1 /product="Synaptosomal associated protein, putative" /protein_id="EOY21994.1" /db_xref="Phytozome:POPTR_0015s03450.1" /db_xref="TAIR:AT5G61210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLS5" /translation="MLGFKKSPLKTAKHNSVDPGRVVPSRSNPFDSDDELDNKQTLKP SRRTSSEPTLNPPNFGTNPFDDDEEKVNSSSSSYWQASATRDKYKNDFRDSGGLENQS VQELENYAVYKAEETTKTVNNCVKIAEEMREGATNTLITLHQQGEQITRTHNVAAGID HDLSRGEKLLGSLGGMFSRTWKPKKTRTIVGPVITRDVSPKRSGGHLEQKEKLGLNPV RRGHSKSQTPPPEPTNAFQKVEVEKAKQDDALSDLSDLLGELKDMAVDMGSEIERQNK GLNGLQDDVDELNFRVKGANQRARRLLGK" gene complement(20308487..20314177) /locus_tag="TCM_014159" /note="dbxref CacaoGD:Thecc1EG014159" mRNA complement(join(20308487..20309204,20309279..20309377, 20310063..20310163,20310261..20310428,20310589..20310724, 20311165..20311750,20312449..20312551,20313085..20313144, 20313595..20313753,20314069..20314092)) /locus_tag="TCM_014159" /product="Myosin heavy chain-related, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007923001" /inference="similar to AA sequence:Phytozome:GSVIVT01007923001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1696t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1696t7" mRNA complement(join(20308817..20309204,20309279..20309377, 20310063..20310173,20310261..20310428,20310589..20310724, 20311165..20311750,20312449..20312551,20313085..20313144, 20313595..20313753,20314069..20314072)) /locus_tag="TCM_014159" /product="Myosin heavy chain-related, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007923001" /inference="similar to AA sequence:Phytozome:GSVIVT01007923001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1696t7" mRNA complement(join(20309354..20309377,20310063..20310428, 20310589..20310724,20311165..20311750,20312449..20312551, 20313085..20313144,20313595..20313723,20313962..20314177)) /locus_tag="TCM_014159" /product="Myosin heavy chain-related, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007923001" /inference="similar to AA sequence:Phytozome:GSVIVT01007923001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2325t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1696t7" mRNA complement(join(20309920..20310173,20310261..20310450, 20310589..20310724,20311165..20311750,20312449..20312551, 20313085..20313144,20313595..20313746)) /locus_tag="TCM_014159" /product="Myosin heavy chain-related, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007923001" /inference="similar to AA sequence:Phytozome:GSVIVT01007923001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2873t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1696t7" CDS complement(join(20310077..20310163,20310261..20310428, 20310589..20310724,20311165..20311750,20312449..20312551, 20313085..20313144,20313595..20313675)) /locus_tag="TCM_014159" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Myosin heavy chain-related, putative isoform 2" /protein_id="EOY21996.1" /db_xref="Phytozome:GSVIVT01007923001" /db_xref="TAIR:AT5G07890.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DG86" /translation="MSSSSKSEGDNSINVEELLEIETRCRELRKEKEMLKESQSQGFE LIRSLEVHVKSLSEARVQDKKHIKKLEGELKNCSQEIDYLQDQLSARNEEVNFLTEHV HDLEIKLADKGNLQEKVDRLIGELNSSNSDRLSLMQEIENKEEELQQSALCIEKLEES VSSMALESQCEIESMKLDITALEQMCLEANKTEEEKSRMNILIEELEVQLQNALKIIE GLDDENKELRGKLITSEKNAKIFCQKIKEWLKSKDRSQLNMHSVLGEQESMMTISKDI SGCKELFSALLSEVALLLESDADSKEQYESMSHQINEYELLVKQLKDELREQKLKAKE EAEDLAQEMAELRYRMMGLLEEECKRRACIEQASLQRIAELEAQSLKNQMLLLGISMN HKDWLQLGFLMSIS" CDS complement(join(20310117..20310173,20310261..20310428, 20310589..20310724,20311165..20311750,20312449..20312551, 20313085..20313144,20313595..20313675)) /locus_tag="TCM_014159" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Myosin heavy chain-related, putative isoform 1" /protein_id="EOY21995.1" /db_xref="Phytozome:GSVIVT01007923001" /db_xref="TAIR:AT5G07890.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DG86" /translation="MSSSSKSEGDNSINVEELLEIETRCRELRKEKEMLKESQSQGFE LIRSLEVHVKSLSEARVQDKKHIKKLEGELKNCSQEIDYLQDQLSARNEEVNFLTEHV HDLEIKLADKGNLQEKVDRLIGELNSSNSDRLSLMQEIENKEEELQQSALCIEKLEES VSSMALESQCEIESMKLDITALEQMCLEANKTEEEKSRMNILIEELEVQLQNALKIIE GLDDENKELRGKLITSEKNAKIFCQKIKEWLKSKDRSQLNMHSVLGEQESMMTISKDI SGCKELFSALLSEVALLLESDADSKEQYESMSHQINEYELLVKQLKDELREQKLKAKE EAEDLAQEMAELRYRMMGLLEEECKRRACIEQASLQRIAELEAQIQKEPQKSDAVVRH LHES" CDS complement(join(20310243..20310428,20310589..20310724, 20311165..20311750,20312449..20312551,20313085..20313144, 20313595..20313675)) /locus_tag="TCM_014159" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Myosin heavy chain-related, putative isoform 4" /protein_id="EOY21998.1" /db_xref="Phytozome:GSVIVT01007923001" /db_xref="TAIR:AT5G07890.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DG86" /translation="MSSSSKSEGDNSINVEELLEIETRCRELRKEKEMLKESQSQGFE LIRSLEVHVKSLSEARVQDKKHIKKLEGELKNCSQEIDYLQDQLSARNEEVNFLTEHV HDLEIKLADKGNLQEKVDRLIGELNSSNSDRLSLMQEIENKEEELQQSALCIEKLEES VSSMALESQCEIESMKLDITALEQMCLEANKTEEEKSRMNILIEELEVQLQNALKIIE GLDDENKELRGKLITSEKNAKIFCQKIKEWLKSKDRSQLNMHSVLGEQESMMTISKDI SGCKELFSALLSEVALLLESDADSKEQYESMSHQINEYELLVKQLKDELREQKLKAKE EAEDLAQEMAELRYRMMGLLEEECKRRACIEQASLQRIAELEAQVTLLC" CDS complement(join(20310442..20310450,20310589..20310724, 20311165..20311750,20312449..20312551,20313085..20313144, 20313595..20313675)) /locus_tag="TCM_014159" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Myosin heavy chain-related, putative isoform 3" /protein_id="EOY21997.1" /db_xref="Phytozome:GSVIVT01007923001" /db_xref="TAIR:AT5G07890.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DG86" /translation="MSSSSKSEGDNSINVEELLEIETRCRELRKEKEMLKESQSQGFE LIRSLEVHVKSLSEARVQDKKHIKKLEGELKNCSQEIDYLQDQLSARNEEVNFLTEHV HDLEIKLADKGNLQEKVDRLIGELNSSNSDRLSLMQEIENKEEELQQSALCIEKLEES VSSMALESQCEIESMKLDITALEQMCLEANKTEEEKSRMNILIEELEVQLQNALKIIE GLDDENKELRGKLITSEKNAKIFCQKIKEWLKSKDRSQLNMHSVLGEQESMMTISKDI SGCKELFSALLSEVALLLESDADSKEQYESMSHQINEYELLVKQLKLI" gene complement(20314508..20317425) /locus_tag="TCM_014160" /note="dbxref CacaoGD:Thecc1EG014160" mRNA complement(join(20314508..20315550,20315911..20316381, 20317033..20317425)) /locus_tag="TCM_014160" /product="Endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011505001" /inference="similar to AA sequence:Phytozome:GSVIVT01007924001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11903t00001" CDS complement(join(20314996..20315550,20315911..20316381, 20317033..20317302)) /locus_tag="TCM_014160" /codon_start=1 /product="Endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain, putative" /protein_id="EOY21999.1" /db_xref="Phytozome:GSVIVT01007924001" /translation="MSQSQQLPQSSFTYLPHSPNSLPNTLLPFPQPPNLLSQPLLYPP GTEPYAHSGHLTLTHVEFEAHAQFHDPNVGQSWITRQADPIKYDTTLSVETLNSSNNN SWMNQSLANDVIGSTPNETQLLQPVWCEVCNVDCNTKDVYEKHLMGKKHQKNLQAKTN LTTVAFPETSNTINNVSIVGQAGNVGGQMIVGASGVANGQELEKKKQKLLNAGAAVDS VRICTICNVACNSHEVFSKHLSGRRHAAQAGLIAVNGIGPYLAAIRANDHFWIKGKKP NKVNQSAWCEVCQINCNSNDAYAKHLSGRKHLKNLEKLEKSKNGTGDPSSTGATNLVI GPVENPVAKNSSSDNVQKSEKRAEQPEAPKEDLEMKKRKVMEGGAAAAAVRVCTICNV VCNSQKVFNYHLTGQKHAAMVKKQADARISTATPQTIPS" mobile_element complement(20317644..20317892) /note="source:CACAO_PIF_E119_scaffold_3 4422 4665" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(20321052..20323595) /locus_tag="TCM_014161" /note="dbxref CacaoGD:Thecc1EG014161" mRNA complement(20321052..20323595) /locus_tag="TCM_014161" /product="C2H2-like zinc finger protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011505001" /inference="similar to AA sequence:ricco:30138.m004008" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4103t1" CDS complement(20321548..20323218) /locus_tag="TCM_014161" /note="dbxref ricco:30138.m004008" /codon_start=1 /product="C2H2-like zinc finger protein, putative" /protein_id="EOY22000.1" /translation="MEEDQKFKHVCKFCSKSFSCGRSLGGHMRSHMTTNNNSAETNDK LSKKKLVSVNNVGCGANTEAGLDAGINGGYVLRGNPKKTWRVADSSEDTLVHDKVCKE CGKGFQSWKALFGHMKCHSEKERASNNSLEEQDSWTSANQRLVMDSQSDNETAAPSKG RRSKRRTRYMGTANSSTFSLTNHASSSMSEIEQEQEEVALSLMMLSRDVGHWGGLNSV AESSDNNSVFLEAKFEIKTSSCNGNEVRLLKKQKEKELESGTVDSETFQAGAGQAEFC ASGLSKTGIRVNKSKNEVSVHESVKDERNSKSQLDGQFGAENSEVELSRNLVKQTGVN RAQLGSSKLNSSKRKLQYSYDPELKSGSVNKLTTDVLDSEFCKDPHKRSKFECTTCNK IFHSYQALGGHRASHKKIKGCFASRIDGSENSIETEHSPDPTADSKLVKSIGNEFPIA QLTADSDDKAEISYGVKKSKGHECPICLKVFPSGQALGGHKRSHLVAEAKANQAIVIQ KPIPEIRDFLDLNLPAPVEEETSAHVGFKPWWVGSSHKHEALVGLISN" gene complement(20323754..20326611) /locus_tag="TCM_014162" /note="dbxref CacaoGD:Thecc1EG014162" mRNA complement(join(20323754..20324396,20326316..20326611)) /locus_tag="TCM_014162" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS complement(join(20324267..20324396,20326316..20326563)) /locus_tag="TCM_014162" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22001.1" /translation="MCKHMMFRILLWQKANNIPFFALTALCLTPPQLSVHKQLGEKRF LDEFTAKHCTKVPAKRAQKKGVVASKMRLSAANKTFTLRLPAAADEVLNCVMRSSQST AFPSPTPPNQITPNEPCLAEMTR" mobile_element complement(20324913..20325638) /note="source:CACAO_on_E373_scaffold_1 1 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(20326657..20326798) /note="source:CACAO_M_E24751_F297_scaffold_4 1272 1359" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20331292..20335699) /locus_tag="TCM_014163" /note="dbxref CacaoGD:Thecc1EG014163" mRNA complement(join(20331292..20333314,20333870..20334020, 20335614..20335699)) /locus_tag="TCM_014163" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g21780.1" /inference="similar to AA sequence:frave:gene25773" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:PASA:2:TSA:puevd3b013689t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4148t1" mRNA complement(join(20331292..20333389,20333870..20334020, 20335425..20335590)) /locus_tag="TCM_014163" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g21780.1" /inference="similar to AA sequence:Phytozome:Glyma06g21780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:PASA:2:TSA:puevd3b013689t1a3; alternateUTRof:Thecc1EG014163t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4148t1" mRNA complement(join(20331292..20333389,20333870..20334020, 20334966..20335113)) /locus_tag="TCM_014163" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g21780.1" /inference="similar to AA sequence:Phytozome:Glyma06g21780.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4148t1" CDS complement(join(20331987..20333314,20333870..20334014)) /locus_tag="TCM_014163" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene25773" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY22004.1" /db_xref="TAIR:AT1G26580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GT35" /translation="MVHKRPFVEEDTFEVSNKQSRQAECSNKLVLSSESFLPEDDSLI SNASGNAEDFEANVPSCIAISSLGTCCTGEEDSWPEEPLHIPSFAECFHPERQVRTSA RWDDIYSILLECPPRKQVLAGPNYQADIPEWDSQVARNTSNDTDASETAADRYENKLM GTCIIPMPAFECSAYDDKVGSGRSDCSCEDKDSVRCVRQHIMEAREELRKSLGHEKFV ELGFCDMGELVTMKWSEEEEQLFHKVVFSNPASLGRNFWDSLVSVYPYRTKEDIVSYY FNVFMLRKRSEQNRCESMSIDSDNDEWQGTDDSGNNEVGFSDEDEDSVIESPICQEDF DNHRSQEAGLCVFDEDIADETCDNHSIDFGSRGDATKVSETYSEKLFSSCGSDPTAQL HGKTLKDTQGEQEEREVQDYSCTSSDTGAASHETPVNADNADQWQGNLNGLNNGGSHG YVLEPCDTKVWDAGYPTCQKNKIDFLPTCSMIEEVFGDGS" CDS complement(join(20331987..20333389,20333870..20334014)) /locus_tag="TCM_014163" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22002.1" /db_xref="Phytozome:Glyma06g21780.1" /db_xref="TAIR:AT1G26580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GT35" /translation="MVHKRPFVEEDTFEVSNKQSRQAECSNKLVLSSESFLPEDDSLI SNASGEDRFINANTECDEKLANAIDTKHPGNAEDFEANVPSCIAISSLGTCCTGEEDS WPEEPLHIPSFAECFHPERQVRTSARWDDIYSILLECPPRKQVLAGPNYQADIPEWDS QVARNTSNDTDASETAADRYENKLMGTCIIPMPAFECSAYDDKVGSGRSDCSCEDKDS VRCVRQHIMEAREELRKSLGHEKFVELGFCDMGELVTMKWSEEEEQLFHKVVFSNPAS LGRNFWDSLVSVYPYRTKEDIVSYYFNVFMLRKRSEQNRCESMSIDSDNDEWQGTDDS GNNEVGFSDEDEDSVIESPICQEDFDNHRSQEAGLCVFDEDIADETCDNHSIDFGSRG DATKVSETYSEKLFSSCGSDPTAQLHGKTLKDTQGEQEEREVQDYSCTSSDTGAASHE TPVNADNADQWQGNLNGLNNGGSHGYVLEPCDTKVWDAGYPTCQKNKIDFLPTCSMIE EVFGDGS" CDS complement(join(20331987..20333389,20333870..20334014)) /locus_tag="TCM_014163" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22003.1" /db_xref="Phytozome:Glyma06g21780.1" /db_xref="TAIR:AT1G26580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GT35" /translation="MVHKRPFVEEDTFEVSNKQSRQAECSNKLVLSSESFLPEDDSLI SNASGEDRFINANTECDEKLANAIDTKHPGNAEDFEANVPSCIAISSLGTCCTGEEDS WPEEPLHIPSFAECFHPERQVRTSARWDDIYSILLECPPRKQVLAGPNYQADIPEWDS QVARNTSNDTDASETAADRYENKLMGTCIIPMPAFECSAYDDKVGSGRSDCSCEDKDS VRCVRQHIMEAREELRKSLGHEKFVELGFCDMGELVTMKWSEEEEQLFHKVVFSNPAS LGRNFWDSLVSVYPYRTKEDIVSYYFNVFMLRKRSEQNRCESMSIDSDNDEWQGTDDS GNNEVGFSDEDEDSVIESPICQEDFDNHRSQEAGLCVFDEDIADETCDNHSIDFGSRG DATKVSETYSEKLFSSCGSDPTAQLHGKTLKDTQGEQEEREVQDYSCTSSDTGAASHE TPVNADNADQWQGNLNGLNNGGSHGYVLEPCDTKVWDAGYPTCQKNKIDFLPTCSMIE EVFGDGS" gene complement(20336774..20342521) /locus_tag="TCM_014164" /note="dbxref CacaoGD:Thecc1EG014164" mRNA complement(join(20336774..20337079,20337746..20337878, 20337976..20338062,20339131..20339216,20340158..20340248, 20340534..20340619,20340771..20340879,20342389..20342521)) /locus_tag="TCM_014164" /product="Leucine-rich repeat family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007912001" /inference="similar to AA sequence:ricco:30138.m004005" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02118t00002; inference alignment:Newbler:10:TSA:cgbaP2_g02118t00001" mRNA complement(join(20336778..20337079,20337746..20337878, 20337976..20338062,20339131..20339216,20340158..20340248, 20340534..20340619,20340771..20340879,20341246..20341292, 20341495..20341564,20342389..20342492)) /locus_tag="TCM_014164" /product="Leucine-rich repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007912001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042197t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s03470.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02118t00001" CDS complement(join(20337768..20337878,20337976..20338062, 20339131..20339216,20340158..20340248,20340534..20340619, 20340771..20340879,20342389..20342487)) /locus_tag="TCM_014164" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m004005" /codon_start=1 /product="Leucine-rich repeat family protein isoform 2" /protein_id="EOY22006.1" /db_xref="TAIR:AT5G07910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE14" /translation="MGCCESKGADSKANRIARWRSTGIVALRDAKLKILSTNLIERLP INLGKLQSLKVMILDGNQITSLPDEVGQLVRLERLSIYGNMLTSLPETIGSLRNLSLL NVSNNKLKYLPESVGSCFSLEELQANDNLIEELPASVCNLIHLKSLCLNNNNVSEIPS NLLKDCKTLQNISLHGNPISMDQFQQMDGFQEFEARRKKKFDKQIDSNVMISSKGLDE GVDL" CDS complement(join(20337768..20337878,20337976..20338062, 20339131..20339216,20340158..20340248,20340534..20340619, 20340771..20340879,20341246..20341292,20341495..20341564, 20342389..20342487)) /locus_tag="TCM_014164" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042197t1" /codon_start=1 /product="Leucine-rich repeat family protein isoform 1" /protein_id="EOY22005.1" /db_xref="Phytozome:POPTR_0015s03470.2" /db_xref="TAIR:AT5G07910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE14" /translation="MGCCESKGADSKANRIARWRSTGIVALRDAKLKTFPDEVLDLDR SVRTLDLTHNKLVEIPMEISKLVNMHRLILSTNLIERLPINLGKLQSLKVMILDGNQI TSLPDEVGQLVRLERLSIYGNMLTSLPETIGSLRNLSLLNVSNNKLKYLPESVGSCFS LEELQANDNLIEELPASVCNLIHLKSLCLNNNNVSEIPSNLLKDCKTLQNISLHGNPI SMDQFQQMDGFQEFEARRKKKFDKQIDSNVMISSKGLDEGVDL" misc_feature complement(join(20338035..20339216,20340158..20340196)) /locus_tag="TCM_014164" /note="Gene fragment of Thecc1EG014164t1; dbxref gnl|CacaoGD|Thecc1EG014164t1; quality class is mediumpartial-partof is thecc1eg014164t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc650t9; dbxref CacaoGD:Thecc1EG014165t1" mobile_element complement(20343753..20345693) /note="source:scaffold_5_CACTA_0615 216 2265" /mobile_element_type="transposon:TIR/CACTA" gene 20345704..20361437 /locus_tag="TCM_014166" /note="dbxref CacaoGD:Thecc1EG014166" mRNA join(20345704..20346159,20348421..20348525, 20348638..20348768,20348920..20349135,20349244..20349315, 20349653..20349739,20350360..20350393,20350482..20350536, 20351169..20351228,20351397..20351468,20351704..20351767, 20352544..20352623,20352849..20352916,20353008..20353065, 20353293..20353350,20353425..20353493,20354136..20354204, 20354572..20354661,20355570..20355656,20356044..20356159, 20356240..20356306,20356601..20357641,20357969..20358031, 20358306..20358429,20358518..20358618,20359319..20359381, 20359483..20359555,20360424..20361182) /locus_tag="TCM_014166" /product="RNA helicase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034192t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s01110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc558t13" mRNA join(20345848..20346159,20348421..20348525, 20348638..20348768,20348920..20349135,20349244..20349315, 20349653..20349739,20350360..20350393,20350482..20350536, 20351169..20351228,20351397..20351468,20351704..20351767, 20352544..20352623,20352849..20352916,20353008..20353065, 20353293..20353350,20353425..20353493,20354136..20354204, 20354572..20354661,20355570..20355656,20356044..20356159, 20356240..20356306,20356601..20357641,20357969..20358031, 20358306..20358429,20358518..20358618,20359319..20359381, 20359483..20359555,20360424..20360453,20360693..20361437) /locus_tag="TCM_014166" /product="RNA helicase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g04790.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034192t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s01110.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc558t13; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc558t13; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc362t15" mobile_element 20347703..20347862 /note="source:CACAO_on_E22_A_scaffold_2 4867 5026" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(20348426..20348525,20348638..20348768, 20348920..20349135,20349244..20349315,20349653..20349739, 20350360..20350393,20350482..20350536,20351169..20351228, 20351397..20351468,20351704..20351767,20352544..20352623, 20352849..20352916,20353008..20353065,20353293..20353350, 20353425..20353493,20354136..20354204,20354572..20354661, 20355570..20355656,20356044..20356159,20356240..20356306, 20356601..20357641,20357969..20358031,20358306..20358429, 20358518..20358618,20359319..20359381,20359483..20359555, 20360424..20360453,20360693..20360712) /locus_tag="TCM_014166" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034192t2" /codon_start=1 /product="RNA helicase family protein isoform 2" /protein_id="EOY22008.1" /db_xref="Phytozome:POPTR_0015s01110.1" /db_xref="TAIR:AT1G32490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQK8" /translation="MGSESNLKTWVSDKLMSLLDYSQPTLVQYIIGLAKQAASPTDLL GQLEECGLPSSSETRLFAQEIFSRVPRKISGENLYQKQEREAAILARKQKTYAILDAD DNEDDTGTSSSVHHQSSSEPISEARKADKHKKRFRKKIGSEEDEDDEVITHVEEERRV KRRTSQDEDDGSESEEERLRDQREREDLERNIRERDAAATRKLMDPKLSRKEEEEAIR RSKAFKEDDINSLRKVSRQEYLKKREQKKLEELRDEIEDEQYLFDGVKLTEAEYHELS YKKEIYELVKKRTEEDENMGEYKMPEAYDQEGVVDQEKRFAVALQRYRDPTAGDKMNP FAEQEAWEEHQIGKATLKFGSKNKKQTADDYQFVFEDQIEFIKASVMDGDKFDNDLPT ESPETSKAKSELEKLQEDRKTLPIYPYRDDLLKAVEDFQVLVIVGETGSGKTTQIPQY LHEAGYTKHGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTVLK YMTDGMLLRELLGEPDLASYSVIMVDEAHERTVSTDILFGLVKDIARFRKDIKLLISS ATLDAEKFSDFFDSAPIFKIPGRRYPVEIHYTKAPEADYLDAAIVTVLQIHVSQSPGD ILVFLTGQEEIETAEEILKHRIKGFGTKIAELIICPIYANLPTELQAKIFEPTPEAAR KVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASANQRAGRS GRTGPGKCFRLYTAYNYYTELDDNTPPEIQRTNLASVVLSLKSLGIHDLINFDFMDPP PAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKYKCSDEVIS ISAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALMKVYNSWRETNYSTQWCY ENYIQVRSMKRARDVRDQLEGLLERVEIELTSNLNDLEAIKKAITSGFFPHSARLQKN GSYRTVKHPQTVYIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPDWLVEIAPH YYQMKDVEDPGSKKMPKGQEDKRVK" CDS join(20348426..20348525,20348638..20348768, 20348920..20349135,20349244..20349315,20349653..20349739, 20350360..20350393,20350482..20350536,20351169..20351228, 20351397..20351468,20351704..20351767,20352544..20352623, 20352849..20352916,20353008..20353065,20353293..20353350, 20353425..20353493,20354136..20354204,20354572..20354661, 20355570..20355656,20356044..20356159,20356240..20356306, 20356601..20357641,20357969..20358031,20358306..20358429, 20358518..20358618,20359319..20359381,20359483..20359555, 20360424..20360470) /locus_tag="TCM_014166" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG034192t2" /codon_start=1 /product="RNA helicase family protein isoform 1" /protein_id="EOY22007.1" /db_xref="Phytozome:POPTR_0015s01110.1" /db_xref="TAIR:AT1G32490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQK8" /translation="MGSESNLKTWVSDKLMSLLDYSQPTLVQYIIGLAKQAASPTDLL GQLEECGLPSSSETRLFAQEIFSRVPRKISGENLYQKQEREAAILARKQKTYAILDAD DNEDDTGTSSSVHHQSSSEPISEARKADKHKKRFRKKIGSEEDEDDEVITHVEEERRV KRRTSQDEDDGSESEEERLRDQREREDLERNIRERDAAATRKLMDPKLSRKEEEEAIR RSKAFKEDDINSLRKVSRQEYLKKREQKKLEELRDEIEDEQYLFDGVKLTEAEYHELS YKKEIYELVKKRTEEDENMGEYKMPEAYDQEGVVDQEKRFAVALQRYRDPTAGDKMNP FAEQEAWEEHQIGKATLKFGSKNKKQTADDYQFVFEDQIEFIKASVMDGDKFDNDLPT ESPETSKAKSELEKLQEDRKTLPIYPYRDDLLKAVEDFQVLVIVGETGSGKTTQIPQY LHEAGYTKHGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTVLK YMTDGMLLRELLGEPDLASYSVIMVDEAHERTVSTDILFGLVKDIARFRKDIKLLISS ATLDAEKFSDFFDSAPIFKIPGRRYPVEIHYTKAPEADYLDAAIVTVLQIHVSQSPGD ILVFLTGQEEIETAEEILKHRIKGFGTKIAELIICPIYANLPTELQAKIFEPTPEAAR KVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASANQRAGRS GRTGPGKCFRLYTAYNYYTELDDNTPPEIQRTNLASVVLSLKSLGIHDLINFDFMDPP PAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKYKCSDEVIS ISAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALMKVYNSWRETNYSTQWCY ENYIQVRSMKRARDVRDQLEGLLERVEIELTSNLNDLEAIKKAITSGFFPHSARLQKN GSYRTVKHPQTVYIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPDWLVEIAPH YYQMKDVEDPGSKKMPKGQGRAAE" mRNA join(20349107..20349175,20349244..20349315, 20349653..20349739,20350360..20350393,20350482..20350536, 20351169..20351228,20351397..20351468,20351704..20351767, 20352544..20352623,20352849..20352916,20353008..20353065, 20353293..20353350,20353425..20353493,20354136..20354204, 20354572..20354661,20355570..20355656,20356044..20356159, 20356240..20356306,20356601..20357641,20357969..20358031, 20358306..20358429,20358518..20358618,20359319..20359381, 20359483..20359555,20360424..20360453,20360693..20361437) /locus_tag="TCM_014166" /product="RNA helicase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g04790.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034192t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s01110.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc558t5; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc558t13" CDS join(20349122..20349175,20349244..20349315, 20349653..20349739,20350360..20350393,20350482..20350536, 20351169..20351228,20351397..20351468,20351704..20351767, 20352544..20352623,20352849..20352916,20353008..20353065, 20353293..20353350,20353425..20353493,20354136..20354204, 20354572..20354661,20355570..20355656,20356044..20356159, 20356240..20356306,20356601..20357641,20357969..20358031, 20358306..20358429,20358518..20358618,20359319..20359381, 20359483..20359555,20360424..20360453,20360693..20360712) /locus_tag="TCM_014166" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG034192t2" /codon_start=1 /product="RNA helicase family protein isoform 3" /protein_id="EOY22009.1" /db_xref="Phytozome:POPTR_0015s01110.1" /db_xref="TAIR:AT1G32490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQK8" /translation="MKMMRHSVYILVQFLFLMVITHVEEERRVKRRTSQDEDDGSESE EERLRDQREREDLERNIRERDAAATRKLMDPKLSRKEEEEAIRRSKAFKEDDINSLRK VSRQEYLKKREQKKLEELRDEIEDEQYLFDGVKLTEAEYHELSYKKEIYELVKKRTEE DENMGEYKMPEAYDQEGVVDQEKRFAVALQRYRDPTAGDKMNPFAEQEAWEEHQIGKA TLKFGSKNKKQTADDYQFVFEDQIEFIKASVMDGDKFDNDLPTESPETSKAKSELEKL QEDRKTLPIYPYRDDLLKAVEDFQVLVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT QPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLRELLGEP DLASYSVIMVDEAHERTVSTDILFGLVKDIARFRKDIKLLISSATLDAEKFSDFFDSA PIFKIPGRRYPVEIHYTKAPEADYLDAAIVTVLQIHVSQSPGDILVFLTGQEEIETAE EILKHRIKGFGTKIAELIICPIYANLPTELQAKIFEPTPEAARKVVLATNIAETSLTI DGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASANQRAGRSGRTGPGKCFRLYTAY NYYTELDDNTPPEIQRTNLASVVLSLKSLGIHDLINFDFMDPPPAEALLKALELLFAL SALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKYKCSDEVISISAMLSVGNSIFYRP KDKQVHADNARMNFHTGNVGDHIALMKVYNSWRETNYSTQWCYENYIQVRSMKRARDV RDQLEGLLERVEIELTSNLNDLEAIKKAITSGFFPHSARLQKNGSYRTVKHPQTVYIH PSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPDWLVEIAPHYYQMKDVEDPGSKKM PKGQEDKRVK" mobile_element 20350772..20350810 /note="source:CACAO_M_E14074_F143_scaffold_3 1260 1298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20350777..20350815) /note="source:INTACT495_F229_scaffold_2-int 2853 2891" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(20360693..20364802) /locus_tag="TCM_014167" /note="dbxref CacaoGD:Thecc1EG014167" mRNA complement(join(20360693..20362825,20363935..20364076)) /locus_tag="TCM_014167" /product="UDP-glucose 6-dehydrogenase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene25776" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011574t1" /inference="similar to AA sequence:frave:gene25776" /note="transcript variant 2; alternatively spliced; quality class is strong, express is weak, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc51t29; alternateUTRof:Thecc1EG014167t1" mRNA complement(join(20361348..20362825,20363935..20364178, 20364270..20364802)) /locus_tag="TCM_014167" /product="UDP-glucose 6-dehydrogenase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene25776" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011574t1" /inference="similar to AA sequence:frave:gene25776" /note="transcript variant 1; alternatively spliced; quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(20361377..20362819) /locus_tag="TCM_014167" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene25776; paralog of Thecc1EG011574t1" /codon_start=1 /product="UDP-glucose 6-dehydrogenase family protein isoform 1" /protein_id="EOY22010.1" /db_xref="TAIR:AT5G15490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FM01" /translation="MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRISAWNS DQLPIYEPGLDEVVKECRGKNLFFSTDIEKHVSEAHIIFVSVNTPTKTRGLGAGKAAD LTYWESAARMIADVSKSNKIVVEKSTVPVKTAEAIEKILTHNSKGIKYQILSNPEFLA EGTAIQDLFKPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLA ANAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKD ILNLVYICECNGLPEVANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAF KKDTGDTRETPAIDVCKGLLGDNARLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPM SPTAVKQVSVAWDAYEATKDAHCLCILTEWDEFKTLDYQRIFDNMRKPAFVFDGRNVV NVDNLREKGFIVYSIGKPLDPWLKDMPAVA" CDS complement(20361377..20362819) /locus_tag="TCM_014167" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene25776; paralog of Thecc1EG011574t1" /codon_start=1 /product="UDP-glucose 6-dehydrogenase family protein isoform 1" /protein_id="EOY22011.1" /db_xref="TAIR:AT5G15490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FM01" /translation="MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRISAWNS DQLPIYEPGLDEVVKECRGKNLFFSTDIEKHVSEAHIIFVSVNTPTKTRGLGAGKAAD LTYWESAARMIADVSKSNKIVVEKSTVPVKTAEAIEKILTHNSKGIKYQILSNPEFLA EGTAIQDLFKPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLA ANAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKD ILNLVYICECNGLPEVANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAF KKDTGDTRETPAIDVCKGLLGDNARLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPM SPTAVKQVSVAWDAYEATKDAHCLCILTEWDEFKTLDYQRIFDNMRKPAFVFDGRNVV NVDNLREKGFIVYSIGKPLDPWLKDMPAVA" gene complement(20366193..20374161) /locus_tag="TCM_014168" /note="dbxref CacaoGD:Thecc1EG014168" mRNA complement(join(20366193..20366438,20368404..20368761, 20370331..20370505,20372282..20372421,20373629..20374161)) /locus_tag="TCM_014168" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2325t1" mobile_element 20367885..20368086 /note="source:CACAO_hAT_E962_scaffold_2 405 589" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(20368241..20370543) /note="source:CACAO_hAT_E2821_scaffold_6 1674 3976" /mobile_element_type="transposon:TIR/hAT" CDS complement(join(20368474..20368761,20370331..20370505, 20372282..20372421,20373629..20373643)) /locus_tag="TCM_014168" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22012.1" /translation="MSETPLVLSRQLKRIFGEEDFSAQFLDLKISIPQFIKWAKDCTS KLDLSKMRLKISMASQSHNLALTPSHAVTPTSMSSSSPSPTTQQIAISTNESKAVCSK KRKSTSTERCKITIGEEKDKSELERYLSLNEPNAINSDNFDVLIWRKLNNHRYPTLAL LTYHVLAIPPSIVASKLVFSIGGCVLDAKSSLTLKMMQAFICTQD" gene 20374226..20375003 /locus_tag="TCM_014169" /note="dbxref CacaoGD:Thecc1EG014169" mRNA 20374226..20375003 /locus_tag="TCM_014169" /product="ATP-binding cassette sub-family D member 4, putative" /inference="alignment:exonerate- protein:2:ricco:30138.m004003" /inference="similar to AA sequence:ricco:30138.m004003" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc819t11" CDS 20374399..20374854 /locus_tag="TCM_014169" /note="dbxref ricco:30138.m004003" /codon_start=1 /product="ATP-binding cassette sub-family D member 4, putative" /protein_id="EOY22013.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLR6" /translation="MGEKSKEKVRPPPRERRLALASPTYAHLQTLNPISRLSPRNNGS TLYDSYELRAVTYQLNKAMHRSTGSSPAHLCYLMSPFYSRRLDRVNTQNSRAPKKVVC SHLTCATINRNASNKRTRDVTRGFAAKLWNKVKQGLLRSIKQRNELSDT" gene complement(20375020..20381626) /locus_tag="TCM_014170" /note="dbxref CacaoGD:Thecc1EG014170" mRNA complement(join(20375020..20375554,20375907..20376044, 20376407..20376571,20377090..20377209,20377841..20377917, 20378293..20378659,20379490..20381004,20381373..20381528)) /locus_tag="TCM_014170" /product="Diacylglycerol kinase1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s06780.1" /inference="similar to AA sequence:ricco:30138.m004002" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4265t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4265t3" CDS complement(join(20375405..20375554,20375907..20376044, 20376407..20376571,20377090..20377209,20377841..20377917, 20378293..20378659,20379490..20380659)) /locus_tag="TCM_014170" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m004002" /codon_start=1 /product="Diacylglycerol kinase1 isoform 1" /protein_id="EOY22014.1" /db_xref="TAIR:AT5G07920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39017" /translation="MDEERMLHPSWTDKSPSEMAAESRLFIFSCVIAGLVGILTIFYT AFQWRRNINLSWMKAVARSKKNPKAEHKVPIAPHTWELESVSRGKNLNCCACLKPMSP SQTLGPMISSDSFIHRCSICGAAAHLSCSSSAHKDCKCVSMIGFEHVMHQWAVRWTEL TDQPDEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLLHVDCHSSMSNETGDICDLGQF RRLILSPLYVKELNQNYGFLSSITLGANEFASSVRATIRSQSKKHKHNNETSVDAGST GSVCDICTESTVDSPQNANGSHAIEENCNGSMNVGTPRHDGGVDKKLESKPSFKRSGS LNQKDESQALRMKQRYELIDLPPDARPLVVFINKKSGAQRGDSLKQRLNLLLNPVQVF ELSSTQGPEIGLFLFRKVPHFRILVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTG NDLARVLSWGGGLGSVERQGGLCTVLQHIEHAAVTILDRWKVAILNQQGKQLQSPKFI NNYLGIGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFADFPWQVR VEVDGVEIEVPEDAEGVLVANIGSYMGGVDLWQNEDETYENFDPQSMHDKILEVVSIS GTWHLGTLQVGLSRARRLAQGQSIKVQLFAALPVQIDGEPWSQQPCTLVISHHGQAFM LKRTAEEPLGHAAAIITDVLESAETNHIINASQKRALLQEMALRLT" mRNA complement(join(20376015..20376403,20378292..20378659, 20379490..20381004,20381373..20381626)) /locus_tag="TCM_014170" /product="Diacylglycerol kinase 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s06780.1" /inference="similar to AA sequence:ricco:30138.m004002" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc819t4; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc819t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4265t3" mRNA complement(join(20376020..20376571,20377090..20377209, 20377841..20377917,20378293..20378659,20379490..20381004, 20381373..20381626)) /locus_tag="TCM_014170" /product="Diacylglycerol kinase1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s06780.1" /inference="similar to AA sequence:ricco:30138.m004002" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1167t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4265t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc819t4" CDS complement(join(20376367..20376403,20378292..20378659, 20379490..20380659)) /locus_tag="TCM_014170" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30138.m004002" /codon_start=1 /product="Diacylglycerol kinase 1 isoform 3" /protein_id="EOY22016.1" /db_xref="TAIR:AT5G07920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39017" /translation="MDEERMLHPSWTDKSPSEMAAESRLFIFSCVIAGLVGILTIFYT AFQWRRNINLSWMKAVARSKKNPKAEHKVPIAPHTWELESVSRGKNLNCCACLKPMSP SQTLGPMISSDSFIHRCSICGAAAHLSCSSSAHKDCKCVSMIGFEHVMHQWAVRWTEL TDQPDEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLLHVDCHSSMSNETGDICDLGQF RRLILSPLYVKELNQNYGFLSSITLGANEFASSVRATIRSQSKKHKHNNETSVDAGST GSVCDICTESTVDSPQNANGSHAIEENCNGSMNVGTPRHDGGVDKKLESKPSFKRSGS LNQKDESQALRMKQRYELIDLPPDARPLVVFINKKSGAQRGDSLKQRLNLLLNPVQVF ELSSTQGPEIGLFLFRKVPHFRILVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTG NDLARVLSWGGGLGSVERQGGLCTVLQHIEHAAVTILDRWKVAILNQQGKQLQSPKFI NNYLGSSLSSKAKLVL" CDS complement(join(20376398..20376571,20377090..20377209, 20377841..20377917,20378293..20378659,20379490..20380659)) /locus_tag="TCM_014170" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m004002" /codon_start=1 /product="Diacylglycerol kinase1 isoform 2" /protein_id="EOY22015.1" /db_xref="TAIR:AT5G07920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39017" /translation="MDEERMLHPSWTDKSPSEMAAESRLFIFSCVIAGLVGILTIFYT AFQWRRNINLSWMKAVARSKKNPKAEHKVPIAPHTWELESVSRGKNLNCCACLKPMSP SQTLGPMISSDSFIHRCSICGAAAHLSCSSSAHKDCKCVSMIGFEHVMHQWAVRWTEL TDQPDEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLLHVDCHSSMSNETGDICDLGQF RRLILSPLYVKELNQNYGFLSSITLGANEFASSVRATIRSQSKKHKHNNETSVDAGST GSVCDICTESTVDSPQNANGSHAIEENCNGSMNVGTPRHDGGVDKKLESKPSFKRSGS LNQKDESQALRMKQRYELIDLPPDARPLVVFINKKSGAQRGDSLKQRLNLLLNPVQVF ELSSTQGPEIGLFLFRKVPHFRILVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTG NDLARVLSWGGGLGSVERQGGLCTVLQHIEHAAVTILDRWKVAILNQQGKQLQSPKFI NNYLGIGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFADFPWQVR VEVDGVEIEVPEDAEGVLVANIGSYMGGVDLWQNEDETYENFDPQSMHDKILEVVSIS GTWHLGTLQVI" mRNA complement(join(20377893..20378659,20379490..20381004, 20381373..20381562)) /locus_tag="TCM_014170" /product="Diacylglycerol kinase 1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s06780.1" /inference="similar to AA sequence:ricco:30138.m004002" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc813t9; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc819t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4265t3" CDS complement(join(20378246..20378659,20379490..20380659)) /locus_tag="TCM_014170" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30138.m004002" /codon_start=1 /product="Diacylglycerol kinase 1 isoform 4" /protein_id="EOY22017.1" /db_xref="TAIR:AT5G07920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39017" /translation="MDEERMLHPSWTDKSPSEMAAESRLFIFSCVIAGLVGILTIFYT AFQWRRNINLSWMKAVARSKKNPKAEHKVPIAPHTWELESVSRGKNLNCCACLKPMSP SQTLGPMISSDSFIHRCSICGAAAHLSCSSSAHKDCKCVSMIGFEHVMHQWAVRWTEL TDQPDEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLLHVDCHSSMSNETGDICDLGQF RRLILSPLYVKELNQNYGFLSSITLGANEFASSVRATIRSQSKKHKHNNETSVDAGST GSVCDICTESTVDSPQNANGSHAIEENCNGSMNVGTPRHDGGVDKKLESKPSFKRSGS LNQKDESQALRMKQRYELIDLPPDARPLVVFINKKSGAQRGDSLKQRLNLLLNPVQVF ELSSTQGPEIGLFLFRKVPHFRILVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTG NDLARVLSWGGGLGSVERQGGLCTVLQHIEHAAVTILDRWKVAILNQQGKQLQSPKFI NNYLGMQTNSFKSSRIRLS" gene complement(20384505..20386922) /locus_tag="TCM_014171" /note="dbxref CacaoGD:Thecc1EG014171" mRNA complement(join(20384505..20384776,20385524..20385707, 20385871..20385961,20386792..20386922)) /locus_tag="TCM_014171" /product="Ribosomal protein S19e family protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G61170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033500t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06660.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8584t2" CDS complement(join(20384704..20384776,20385524..20385707, 20385871..20385961,20386792..20386875)) /locus_tag="TCM_014171" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG033500t1" /codon_start=1 /product="Ribosomal protein S19e family protein isoform 1" /protein_id="EOY22018.1" /db_xref="Phytozome:POPTR_0015s06660.1" /db_xref="TAIR:AT5G61170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BGC5" /translation="MEAARTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKGGTLK ELAPYDPDWYYIRAASMARKIYLRGGLGVNAFRRIYGGAKRNGSRPRHFCKSSGSIAR HILQQLQNVNIIDLDTKGGRRITSNGQRDLDQVAGRIAVAL" mRNA complement(join(<20384743..20384770,20385524..20385707, 20385871..20385961,20386792..>20386841)) /locus_tag="TCM_014171" /product="Ribosomal protein S19e family protein isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT5G61170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033500t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06660.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc698t6; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8584t2" mRNA complement(join(20384743..20384770,20385416..20385707, 20385871..20385961,20386792..>20386841)) /locus_tag="TCM_014171" /product="Ribosomal protein S19e family protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G61170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033500t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06660.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is weak, protein is partial5; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc698t9; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8584t2" CDS complement(join(<20384743..20384770,20385524..20385707, 20385871..20385961,20386792..>20386839)) /locus_tag="TCM_014171" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG033500t1" /codon_start=1 /product="Ribosomal protein S19e family protein isoform 3" /protein_id="EOY22020.1" /db_xref="Phytozome:POPTR_0015s06660.1" /db_xref="TAIR:AT5G61170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BGC5" /translation="HEFVKAYAAHLKRSGKIELPPWTDIVKGGTLKELAPYDPDWYYI RAASMARKIYLRGGLGVNAFRRIYGGAKRNGSRPRHFCKSSGSIARHILQQLQNVNII DLDTKGRITSNGQRD" CDS complement(join(20385520..20385707,20385871..20385961, 20386792..>20386839)) /locus_tag="TCM_014171" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG033500t1" /codon_start=1 /product="Ribosomal protein S19e family protein isoform 2" /protein_id="EOY22019.1" /db_xref="Phytozome:POPTR_0015s06660.1" /db_xref="TAIR:AT5G61170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BGC5" /translation="HEFVKAYAAHLKRSGKIELPPWTDIVKGGTLKELAPYDPDWYYI RAASMARKIYLRGGLGVNAFRRIYGGAKRNGSRPRHFCKSSGSIARHILQQLQNVNII DLDTKG" mobile_element complement(20392089..20392956) /note="source:CACAO_LINE_E_211_scaffold_8 6449 7313" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 20393374..20397313 /note="source:CACAO_Again_on_E84_scaffold_3 1 3940" /mobile_element_type="transposon:TIR/hAT" mobile_element 20397316..20398224 /note="source:CACAO_M_E5899_F5_scaffold_2 21798 22693" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20399835..20400966 /locus_tag="TCM_014174" /note="dbxref CacaoGD:Thecc1EG014174" mRNA 20399835..20400966 /locus_tag="TCM_014174" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 20399908..20400162 /locus_tag="TCM_014174" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22021.1" /translation="MVAFRVGNVIKTTKKELPQMNSQSQLGLRKRLVVEKDHEATRAL PESSGENIIVCESVTSSSRWGAQINNTLMCCTSHRGSNQP" gene 20404676..20407492 /locus_tag="TCM_014175" /note="dbxref CacaoGD:Thecc1EG014175" mRNA join(20404676..20404882,20405098..20405151, 20405430..20405557,20405636..20405996,20406073..20406144, 20407184..20407249,20407334..20407492) /locus_tag="TCM_014175" /product="Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400055814" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018719t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011511001" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(20404778..20404882,20405098..20405151, 20405430..20405557,20405636..20405996,20406073..20406144, 20407184..20407249,20407334..20407357) /locus_tag="TCM_014175" /note="paralog of Thecc1EG018719t1" /codon_start=1 /product="Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, putative" /protein_id="EOY22022.1" /db_xref="Phytozome:GSVIVT01011511001" /db_xref="TAIR:AT5G15530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LLC1" /translation="MASFSVPCAKSSVLLRSSPLIPSHNLKQNHFFGFQWFSQNQFRT LKVHAQVNEVAVEKSLNSAPIIEITSEEKGKQGIPDLQSIAAFMNQVADLIKLIDSRD IVELQLKQPACEVTIRKKEALPRPGIAPPVITMQATPPTILPSPLPPAEQVTPPTSSS PAAMPLAPEAHAPPQPSKSSHPPLKCPMAGTFYRSPAPGAPPFVKVNAYTEERSPEVG DKVQKGQVVCIIEAMKLMNEIEVDQSGTIVEILAEDGKPVSVDTPLFVIEQ" mobile_element complement(20406134..20406208) /note="source:scaffold_3_CACTA_0382 1861 1935" /mobile_element_type="transposon:TIR/CACTA" gene complement(20407994..20411348) /locus_tag="TCM_014176" /note="dbxref CacaoGD:Thecc1EG014176" mRNA complement(join(20407994..20408990,20409079..20409444, 20409633..20409670,20409769..20410158,20410258..20410483, 20410576..20411348)) /locus_tag="TCM_014176" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g24960.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029406t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2538t1_G2" CDS complement(join(20408418..20408990,20409079..20409444, 20409633..20409670,20409769..20410158,20410258..20410483, 20410576..20411103)) /locus_tag="TCM_014176" /note="paralog of Thecc1EG029406t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22023.1" /db_xref="TAIR:AT5G41980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AZD5" /translation="MVRLYLRRDAERRKRLLAMFKFYMEICHAVSSFLTLLSAASTLC TYRPRVRSYALDFATNREYVRRLVYDNDISCISQIRMNRVTFLKLCEMLESIGGLKST KNMLVDEQVAIFLHIIAHHVKNRVISLNFRRSGESISRHFHNVLAAVLKLQEHLFRKP EPIPTNSTDNQWKWFKNCLGALDGTYIRVKVPSADKPRYRTRKGNIATNMLGVCTPDM QFVFVLPGWEGSVADGRVLRDALRRRNGLKVPNGCYYLVDAGYTNCEGFLAPYRGQRY HLNEWRQGHDPSSHEEFFNMKHAAARNVIERCFGLLKMRWGILRSPSFYPIRIHNRII IACCLLHNFIRREMSFDPIEMDLGEYVETNIAVDEDFISTIDPTDVWGLLLGFFPLPV QVKTMSTSSARASQSSKGTKRKWNHREDVALVTALIDLHNIGKYNADTGFRGGYLIEL ENMLATKLPDANLKAKPHIESRIKTLKKEWAIIYDMVQGTHTSGFGWDDQRNMVVADD PVWEAYIQSHKEAAPFRRKSFPFFNELSIIYARDRAIGKDAQTAADILEEMQDCNDTI NEEIEGENLAGYNFEDEDFSNIQPQTSAPRSDTTSTRKRKRLNETGDPITSESIIAAA TILGENIKEAGIEFSKSVGAEVNIQQKAQELDGILSQVEGLTAMERVLASIKLPESPT LMFVFFSIDPDRRLEWLRTFLADR" mobile_element complement(20420453..20421091) /note="source:scaffold_9_CACTA_0931 1 644" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20421752..20421960 /note="source:CACAO_M_E5899_F5_scaffold_2 1122 1325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20422461..20422539) /note="source:INTACT1332F_F13_scaffold_8-int 10525 10604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20424159..20427160 /note="source:CACAO_M_E22712_F15_scaffold_3 1 3532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20430196..20433273) /note="source:scaffold_9_CACTA_0931 1 3057" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20433935..20434033) /note="source:INTACT19F_F94_scaffold_1-int 14810 14908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20434153..20438052) /note="source:CACAO_M_E23991_F4_scaffold_4 6130 9885" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20440024..20442740 /note="source:CACAO_M_E22715_F73_scaffold_3 1 2717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20444002..20444070 /note="source:scaffold_4_CACTA_0498 3984 4052" /mobile_element_type="transposon:TIR/CACTA" gene 20445105..20448886 /locus_tag="TCM_014180" /note="dbxref CacaoGD:Thecc1EG014180" mRNA join(20445105..20445779,20446044..20446318, 20447310..20447592,20448726..20448886) /locus_tag="TCM_014180" /product="Transcription factor, putative" /inference="alignment:exonerate- protein:2:ricco:30138.m004001" /inference="similar to AA sequence:ricco:30138.m004001" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(20445557..20445779,20446044..20446318, 20447310..20447366) /locus_tag="TCM_014180" /note="dbxref ricco:30138.m004001" /codon_start=1 /product="Transcription factor, putative" /protein_id="EOY22024.1" /translation="MYVYTLFSLPSISMMEGHEEYFDDQFPIGYRFMPTDEELVTHYL TNKVCRNPVPPSAFQEIRSTELYRKPPKSSVQYSSGEREWFFFIHQDGNFEEQNKAIR IVEDGRGFWRTNGEKPLFDTKGNVLAFKTHLMYFSGCLSNAKKTHWRMDEYRLPIQFY AQHNSKEQWAVGRLRRGREYNLGF" mobile_element complement(20447663..20448104) /note="source:INTACT135F_F90_scaffold_2-int 13560 14001" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20449330..20449460) /note="source:scaffold_5_CACTA_0602 1 132" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20449351..20452342 /note="source:CACAO_M_E22717_F143_scaffold_3 1 2992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20454174..20454300 /note="source:CACAO_M_S_E83372_F14_scaffold_6 21833 21984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20455491..20457733) /note="source:CACAO_M_S_E32051_F7_scaffold_3 6676 8917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20457734..20460617) /note="source:CACAO_on_E565_scaffold_5 3060 5929" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(20460498..20460636) /note="source:INTACT599_F268_scaffold_9-int 8218 8353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20460618..20461376) /note="source:CACAO_M_S_E32051_F7_scaffold_3 1 767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20463668..20465232) /note="source:CACAO_M_E48538_F49_scaffold_6 11106 12355" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20465663..20466112) /note="source:INTACT1818F_F49_scaffold_11-int 5546 5996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20466181..20466458) /note="source:CACAO_M_E48538_F49_scaffold_6 5763 6100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20467424..20467551 /note="source:INTACT261_F189_scaffold_2-int 11587 11699" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20468039..20468169 /note="source:CACAO_M_S_E83372_F14_scaffold_6 93 229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20468265..20468442) /note="source:INTACT19F_F94_scaffold_1-int 1272 1452" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20469339..20469479) /note="source:CACAO_M_E48538_F49_scaffold_6 12213 12355" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20470238..20478377 /note="source:CACAO_M_E22722_F42_scaffold_3 1 8140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20482088..20482550) /note="source:CACAO_M_E14380_F42_scaffold_3 2653 3115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20486013..20486820 /note="source:CACAO_M_E58440_F42_scaffold_9 4378 5186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20490330..20490912 /note="source:CACAO_M_E52427_F42_scaffold_7 1484 2066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20491014..20491595) /note="source:CACAO_M_E366_F42_scaffold_1 1 582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20497551..20500469 /note="source:CACAO_M_E22733_F54_scaffold_3 1 2919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20501489..20504578 /note="source:CACAO_M_E22736_F306_scaffold_3 1 3090" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20510107..20510479) /note="source:CACAO_M_E4368_F316_scaffold_2 5065 5429" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20510394..20514208 /note="source:CACAO_M_S_E32519_F76_scaffold_3 411 4251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20514328..20515021) /note="source:CACAO_M_E23009_F76_scaffold_4 399 1125" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20514760..20515303 /note="source:CACAO_M_E11925_F316_scaffold_2 7384 7955" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20515265..20515326) /note="source:CACAO_M_E22186_F143_scaffold_3 9952 10013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20515288..20515342 /note="source:CACAO_M_E26982_F230_scaffold_4 1168 1222" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20516737..20518949) /locus_tag="TCM_014185" /note="dbxref CacaoGD:Thecc1EG014185" mRNA complement(join(20516737..20517926,20518162..20518949)) /locus_tag="TCM_014185" /product="UDP-Glycosyltransferase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m003997" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014202t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007898001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5808t1" mRNA complement(join(20516846..20517926,20518162..20518328, 20518406..20518886)) /locus_tag="TCM_014185" /product="UDP-Glycosyltransferase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30138.m003997" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014202t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007898001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6118t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5808t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6284t3_C1" CDS complement(join(20517052..20517926,20518162..20518648)) /locus_tag="TCM_014185" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014202t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 1" /protein_id="EOY22025.1" /db_xref="Phytozome:GSVIVT01007898001" /db_xref="TAIR:AT3G02100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SI32" /translation="MARQPHVMVIPHAAQGHVAPLMKLSLQIAAHGVKVTFVNTEFIH EKVKASLPAKAEQQSLINLVSIPDGLEPEDDRQDFVKLTESMLRVMPGHLRNLIENIN RSNVTEQITWVIADMAAGWALEVAKKMGIKRAAVLLSSPASMALALHVPRLIEAGIID TDGTLIKDEPITLSEDIPAWNSSELSWSCCDPVLQKLLFAYICTALRTCKFADQILCN TFYELDSSAMKLIPKIIPIGPFIACNNFEAFSGNFWPEDSTCLSWLDKQTPGSVIYVA LGSTTILSPQQVDELALGLELTGLPFLWVVRSNLTDGSTVKFPEGFINRVAGRGKIVG WAPQEKVLAHRSIACFLSHCGWNSTLEGLSTGIPFLCWPYFADQFHNRSYICDLWKIG LALAKDENGIITRNEMSTKIKILLSSDGIKANALHLKEVARKSVSERGSSFKNFKSFI EQI" CDS complement(join(20517052..20517926,20518162..20518328, 20518406..20518446)) /locus_tag="TCM_014185" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014202t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 2" /protein_id="EOY22026.1" /db_xref="Phytozome:GSVIVT01007898001" /db_xref="TAIR:AT3G02100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SI32" /translation="MGWNQKMIDKILLSEQITWVIADMAAGWALEVAKKMGIKRAAVL LSSPASMALALHVPRLIEAGIIDTDGTLIKDEPITLSEDIPAWNSSELSWSCCDPVLQ KLLFAYICTALRTCKFADQILCNTFYELDSSAMKLIPKIIPIGPFIACNNFEAFSGNF WPEDSTCLSWLDKQTPGSVIYVALGSTTILSPQQVDELALGLELTGLPFLWVVRSNLT DGSTVKFPEGFINRVAGRGKIVGWAPQEKVLAHRSIACFLSHCGWNSTLEGLSTGIPF LCWPYFADQFHNRSYICDLWKIGLALAKDENGIITRNEMSTKIKILLSSDGIKANALH LKEVARKSVSERGSSFKNFKSFIEQI" mobile_element 20519198..20519253 /note="source:CACAO_M_E42809_F5_scaffold_5 1341 1394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20519230..20519277) /note="source:CACAO_M_E5899_F5_scaffold_2 20740 20787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20519958..20525897 /note="source:INTACT566_F257_scaffold_7-int 1 6010" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20526081..20526164 /note="source:CACAO_on_E18_scaffold_1 769 854" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 20526335..20526390 /note="source:CACAO_on_E18_scaffold_1 739 800" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 20528559..20528755 /note="source:scaffold_4_CACTA_0505 10879 11057" /mobile_element_type="transposon:TIR/CACTA" gene complement(20528942..20530797) /locus_tag="TCM_014186" /note="dbxref CacaoGD:Thecc1EG014186" mRNA complement(join(20528942..20529379,20529540..20530034, 20530193..20530254,20530474..20530797)) /locus_tag="TCM_014186" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene05208" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" mobile_element complement(20529058..20529123) /note="source:CACAO_M_E3950_F88_scaffold_1 5114 5176" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(20529161..20529379,20529540..20530034, 20530193..20530254,20530474..20530678)) /locus_tag="TCM_014186" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22027.1" /translation="MGFRDIRNFNQVMLTKQGWQLQMRIPTIALKLLKARYFPYGSFL DASMGSNPSYLWRSIRESQSLINQVSLQLLVDRLVWQHSRDGNYMAALNRRNITVDAY CPMCNADLEADFHILCECSFAKVVCLASKWGIRDIDHRFSSPKEWFLMLLQKLDRITV EEVCCVMRAIWKGRNSLVFKKESMNLLQVIQLGLGMCFQFATVYMTERPHQENIDLQI VDVSDPVVPNSTVMLIFFNVMGKHLQVQALSCEILMSKVFAGDMEHIVEDCCMVLNLL HSPTVSHCKRDATYVAHELAHSVKTTRSIPFGDKVIIYQKWPNMHYNGTV" mobile_element complement(20531497..20531546) /note="source:scaffold_6_CACTA_0700 4799 4848" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20531548..20533485 /note="source:CACAO_M_E69835_F73_scaffold_9 1 1917" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20531810..20535489) /locus_tag="TCM_014187" /note="dbxref CacaoGD:Thecc1EG014187" mRNA complement(join(20531810..20531988,20532807..20532880, 20534677..20534770,20535482..20535489)) /locus_tag="TCM_014187" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027899t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc9Loc4041t2_G2" CDS complement(join(20531868..20531988,20532807..20532880, 20534677..20534757)) /locus_tag="TCM_014187" /note="paralog of Thecc1EG027899t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22028.1" /translation="MCTTIGGQPLDWLRFFLLVVFVGLLRKVVSYLIRVKDYTRGPRI GVYLLLVQLRIGSRLSIASRSKFRSCILESKVIDLNLLSYLGAHVSL" mobile_element 20534033..20534547 /note="source:CACAO_M_E59741_F73_scaffold_9 1812 2327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20535162..20535529) /note="source:CACAO_M_E84995_F60_scaffold_10 11047 11389" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20535530..20536967 /note="source:CACAO_M_S_E32294_F9_scaffold_3 1 1438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20536968..20537707) /note="source:CACAO_M_E84995_F60_scaffold_10 10307 11049" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20539032..20544681) /locus_tag="TCM_014189" /note="dbxref CacaoGD:Thecc1EG014189" mRNA complement(join(20539032..20539413,20539801..20539967, 20540040..20540109,20540633..20540964,20541613..20541787, 20541873..20541967,20543432..20543599,20544258..20544681)) /locus_tag="TCM_014189" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s01080.1.2" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(20539813..20539967,20540040..20540109, 20540633..20540964,20541613..20541787,20541873..20541967, 20543432..20543599,20544258..20544510)) /locus_tag="TCM_014189" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22029.1" /translation="MWAIKMKAYLKAFDLWEVVELGGDLPTRQANPTIAQMKQYNEEV AKRFKALSCIHSAITDAIFVRIMACESAKEAWDKIKEEFHEKDTIWLIDTACSTHITS KIKNFLDLSKAYKSTVEIGDGNLLKIEGRGNVGITTKKAMLVVRGFSQVHGVDFFETF APVARHDTIRLLPEGFVEKGKEDKVYKLIKALYGLKQAPRAWYEKIDGYLRSNKFFRN ESEPTLYVKNSLEYVAAASTTNQALWLRKVLLDLKFEQIKPTVLWLDNQSAIALAKNS INHSRTKHIKVKFHVIREAVKNNEVIVNYYGTDDQITDIFTKGFCREKFELLKSKLGM SNVDFKEGKAPEVATVIPDEVTVNVAIAPEEASEPLPVWDNDGKDGMVSNHGMSGFDD ATQVQLMVMELSTVEAKLDCKRI" mobile_element complement(20549124..20550746) /note="source:CACAO_M_E42691_F9_scaffold_5 3318 4974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20551474..20554234 /note="source:CACAO_M_E22743_F79_scaffold_3 1 2755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20566639..20567005 /note="source:INTACT649F_F368_scaffold_5-int 1 353" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20569881..20571315 /note="source:CACAO_M_S_E53041_F7_scaffold_5 1 1466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20574441..20574741) /note="source:CACAO_M_S_E1818_F7_scaffold_1 1232 1531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20574842..20576066) /note="source:CACAO_M_S_E1818_F7_scaffold_1 1 1223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20577205..20577664 /note="source:INTACT649F_F368_scaffold_5-int 773 1245" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20577653..20578369 /note="source:INTACT649F_F368_scaffold_5-int 15409 16130" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20580394..20582568 /note="source:CACAO_M_E5702_F90_scaffold_2 742 2046" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20581398..20590544 /note="source:INTACT64_F13_scaffold_2-int 757 9903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20589242..20590868) /note="source:CACAO_M_E36038_F90_scaffold_5 1 1656" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20594320..20595133) /note="source:INTACT193_F12_scaffold_1-int 7228 8016" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20595380..20595817 /note="source:CACAO_M_E35511_F5_scaffold_5 13178 13616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20597469..20601403) /note="source:INTACT607_F3_scaffold_4-int 9926 13859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20601404..20604191) /note="source:CACAO_M_E43388_F345_scaffold_5 1 2691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20604192..20608139) /note="source:CACAO_M_E42395_F3_scaffold_5 429 4421" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20608140..20610357 /note="source:scaffold_6_CACTA_0702 8212 10428" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20610321..20613311 /note="source:CACAO_M_E10603_F306_scaffold_2 4816 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20613305..20614530 /note="source:scaffold_6_CACTA_0702 10417 11641" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20614450..20614547 /note="source:CACAO_M_S_E64832_F14_scaffold_5 12581 12678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20614545..20614977 /note="source:CACAO_M_S_E4413_F3_scaffold_1 18129 18561" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20615027..20647619) /locus_tag="TCM_014196" /note="dbxref CacaoGD:Thecc1EG014196" mRNA complement(join(20615027..20615573,20615671..20616008, 20616668..20617127,20619341..20619400,20647373..20647619)) /locus_tag="TCM_014196" /product="UDP-Glycosyltransferase superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014202t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007898001" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(20615121..20615573,20615671..20616008, 20616668..20617127,20619341..20619391)) /locus_tag="TCM_014196" /note="paralog of Thecc1EG014202t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein" /protein_id="EOY22030.1" /db_xref="Phytozome:GSVIVT01007898001" /db_xref="TAIR:AT3G02100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SI32" /translation="MKWSNLEPNRTQLSFNRKTTCSSFTLLMKLSLQIAAHGVKVTFV NFEPIHDKIIASTPGIHGKQGLISCASIFDGLELESDRNDAVEFTESTGRVMPGQLMN LIEKINQCNTTNKEQITCVIVDVSIGWALEVAKNMGIEGVAVHTAGPAGLALALCVPQ LIKDEILGDDGTLLKGKSISLSSEIPAWRKFEIPWITSSDIIMQKAIFKFVRTGLQNF KFANLILSNSFDDLAPSALKLTPNILLVGLLLASNHLGSFTRSFWPEDSTCLSRHDKQ DAGSVIYNQPYRRKFIYKFPKGFTDRIADRGKIIEWVPQEKVLAHPSVACFLSHCGWN STMEGLSMRVPFLCWPYFADQFHNRIYICNVWNIGLPLTPNENGIITKHEISARKKTL ISSDGIKANVLDLKQVARKSIDEARSSFKNLKSFIERIKAI" mobile_element 20617850..20620578 /note="source:CACAO_M_E22758_F79_scaffold_3 1 2729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20620721..20621123 /note="source:CACAO_on_E18_scaffold_1 716 1133" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 20624315..20624818 /note="source:INTACT132_F12_scaffold_9-int 8903 9386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20624919..20625457) /note="source:INTACT51F_F15_scaffold_1-int 10218 10755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20625452..20625550) /note="source:INTACT215F_F14_scaffold_3-int 7544 7643" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20629431..20629636) /note="source:INTACT215F_F14_scaffold_3-int 6026 6230" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20629612..20630791) /note="source:INTACT584_F15_scaffold_3-int 911 2088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20631501..20632102) /note="source:CACAO_M_E59744_F15_scaffold_9 7200 7795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20632098..20633009) /note="source:CACAO_M_E52773_F15_scaffold_8 6233 7145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20635488..20637425 /note="source:CACAO_M_E3109_F15_scaffold_1 6780 8706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20637543..20637832 /note="source:CACAO_M_S_E4911_F76_scaffold_1 12633 12939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20637934..20638490) /note="source:CACAO_M_E59650_F290_scaffold_9 3024 3579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20639756..20642708 /note="source:CACAO_M_E22761_F143_scaffold_3 1 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20643699..20646836) /note="source:INTACT11F_F4_scaffold_1-int 1517 4690" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20646837..20649023) /note="source:CACAO_M_E11364_F144_scaffold_2 467 2678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20649015..20649589 /note="source:CACAO_M_S_E64023_F13_scaffold_5 16478 17051" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20652304..20656279) /note="source:INTACT688_F14_scaffold_11-int 6251 10260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20656945..20657534 /note="source:INTACT135F_F90_scaffold_2-int 13385 14004" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20657529..20663397) /note="source:INTACT688_F14_scaffold_11-int 336 6190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20663389..20663629) /note="source:CACAO_M_E50500_F14_scaffold_7 9009 9246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20664482..20667592 /note="source:CACAO_M_E22770_F306_scaffold_3 1 3111" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20669833..20672127) /locus_tag="TCM_014202" /note="dbxref CacaoGD:Thecc1EG014202" mRNA complement(join(20669833..20671144,20671379..20672127)) /locus_tag="TCM_014202" /product="UDP-Glycosyltransferase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014185t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007898001" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6284t3_C1" CDS complement(join(20670261..20671144,20671379..20671865)) /locus_tag="TCM_014202" /note="paralog of Thecc1EG014185t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein, putative" /protein_id="EOY22031.1" /db_xref="Phytozome:GSVIVT01007898001" /db_xref="TAIR:AT3G02100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SI32" /translation="MARKPHVLAIPFPAQGHVAPFMKLALQIAANGVKITFVNSESVH ERIMASVSADIEEQSLISLVSIPDALESRGAQRNAVNFTKRAQKGMPGSLKNLIEKIN QSNINEQITCVLADTTAVWALEVAKEMGIGRIAVQVAGPAVLALSLQIPQLLGAGILD NDGILVKGESISLSKEIPAWSRSDIPWSSSDPEMQKAIFGLSCTLPKIVGFTNLILSN TFYELDASALKLVPNILPIGPLHARNYMGTFAGNFWPEDSICISWLDQQTAGSVIYVA FGSTGKFSPQQVDELALGLELTGHPFLWVVRSNLSNGSVTKFPEGFIERIADRGKIVE WGPQEKVLAHPSVACFVSHCGWNSTLEGLSKGIPFLCWPYFTDQLHNKSYICDVWRIG LGVDPDENGIITRHEISTKIKAVLSSDAIKANALHLKELARKSVNEGGSSYKNFKSFI EQIKGV" mobile_element 20675393..20680150 /note="source:INTACT717_F312_scaffold_5-int 4012 8743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20679807..20680188) /note="source:CACAO_M_E22265_F82_scaffold_3 6205 6582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20680200..20681148 /note="source:INTACT717_F312_scaffold_5-int 10004 10962" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20684923..20686941 /locus_tag="TCM_014204" /note="dbxref CacaoGD:Thecc1EG014204" mRNA join(20684923..20685111,20685238..20685791, 20685942..20686043,20686692..20686941) /locus_tag="TCM_014204" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4235t4" CDS join(20684981..20685111,20685238..20685319) /locus_tag="TCM_014204" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22032.1" /translation="MKRKRERKNRERGRAKRMVLLHFEEEKREFLLQFWRKKKAKNFE KNWSCLCRKIGVVCCRKNWSCLCRKN" mobile_element 20686454..20686794 /note="source:INTACT226_F51_scaffold_1-int 8989 9333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20686796..20690979) /note="source:CACAO_M_E3859_F82_scaffold_1 2039 6025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20691080..20693083) /note="source:CACAO_M_E11733_F85_scaffold_2 1 2018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20693659..20694020) /note="source:CACAO_M_E69275_F82_scaffold_9 5 361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20694018..20694281 /note="source:CACAO_M_S_E84840_F51_scaffold_7 10138 10402" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20696505..20697057) /note="source:INTACT542_F243_scaffold_4-int 1 549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20697058..20697875 /note="source:INTACT226_F51_scaffold_1-int 10415 11219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20697869..20699224) /note="source:CACAO_M_E43672_F60_scaffold_5 10453 11800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20699419..20699826) /note="source:CACAO_M_E14113_F106_scaffold_3 19166 19574" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20699830..20702775) /note="source:CACAO_M_S_E34046_F60_scaffold_4 3510 6459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20702849..20703280 /note="source:CACAO_on_SS_E90_scaffold_6 6957 7385" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(20703575..20704454) /note="source:CACAO_M_E49195_F17_scaffold_6 13507 14374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20704454..20704729) /note="source:CACAO_M_E14113_F106_scaffold_3 10814 11091" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20704728..20705939 /note="source:CACAO_M_E52239_F256_scaffold_7 19810 21000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20705940..20706478) /note="source:INTACT139_F15_scaffold_3-int 10223 10761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20706183..20707921 /note="source:CACAO_M_S_E99477_F254_scaffold_9 380 2114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20707922..20709012) /note="source:CACAO_M_E69751_F323_scaffold_9 1948 3039" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20709375..20709827 /note="source:CACAO_M_E53587_F207_scaffold_8 8111 8563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20709428..20714153) /note="source:INTACT453_F4_scaffold_9-int 8114 12822" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20714254..20715798) /note="source:CACAO_M_E53587_F207_scaffold_8 11238 12783" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20716183..20717168 /note="source:CACAO_M_E57924_F323_scaffold_9 923 1909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20717622..20718104 /note="source:CACAO_M_E43809_F323_scaffold_5 1917 2385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20721649..20722711 /note="source:scaffold_4_CACTA_0494 16844 17907" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20726231..20726444) /note="source:CACAO_M_E86052_F15_scaffold_12 4119 4332" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20726442..20727429) /note="source:CACAO_M_E69340_F15_scaffold_9 7801 8507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20727428..20728905 /note="source:CACAO_M_E52239_F256_scaffold_7 21000 22442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20728901..20729035) /note="source:CACAO_M_E14113_F106_scaffold_3 18690 18824" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20729618..20730420 /note="source:CACAO_M_E23859_F15_scaffold_4 1 801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20731757..20732414) /note="source:CACAO_M_S_E4911_F76_scaffold_1 2966 3662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20733077..20733136 /note="source:CACAO_M_S_E5285_F300_scaffold_1 13515 13582" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20733137..20736456 /note="source:CACAO_M_E22786_F85_scaffold_3 1 3305" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20737211..20737435) /note="source:CACAO_M_E52239_F256_scaffold_7 18929 19131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20737237..20737411 /note="source:CACAO_M_S_E101707_F15_scaffold_9 13292 13465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20740277..20740769) /note="source:CACAO_M_E294_F134_scaffold_1 9591 10083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20741199..20742438 /note="source:CACAO_M_E4554_F15_scaffold_2 892 2130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20742420..20742581) /note="source:INTACT642F_F365_scaffold_5-int 15900 16059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20742438..20743154 /note="source:CACAO_M_S_E4911_F76_scaffold_1 2972 3688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20745496..20746124 /note="source:CACAO_M_S_E38321_F15_scaffold_4 2964 3592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20746225..20748653) /note="source:INTACT139F_F15_scaffold_2-int 4672 7100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20752340..20752691 /note="source:INTACT1441F_F99_scaffold_9-int 5269 5620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20752944..20753475 /note="source:CACAO_M_E4753_F17_scaffold_2 4473 5003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20753576..20753959 /note="source:CACAO_M_E86338_F15_scaffold_15 10730 11113" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20754524..20758407) /locus_tag="TCM_014209" /note="dbxref CacaoGD:Thecc1EG014209" mRNA complement(join(20754524..20754910,20756530..20757629, 20757897..20758407)) /locus_tag="TCM_014209" /product="UDP-Glycosyltransferase superfamily protein" /inference="alignment:exonerate- protein:2:frave:gene25784.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014203t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007898001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4225t1" CDS complement(join(20756746..20757629,20757897..20758383)) /locus_tag="TCM_014209" /note="paralog of Thecc1EG014203t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein" /protein_id="EOY22033.1" /db_xref="Phytozome:GSVIVT01007898001" /db_xref="TAIR:AT3G02100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SI32" /translation="MDRHPHALVIPFPAQGHVAPLMKLSLQIAAHGVKVTFVNTEFIH EKIMVSVPEKAEGRSLISLASLPDGLELEDDRTDYAKLIESVRRTMPGYLEDFILKIN QSNINEKISCVIADTSVGWALEVAKKVGIEAVAVWPAGGPCLALALHVPQLLEAEIID HDGTVMKDEPISVSKDVPAWSRSEIGWGSSDPVMQKVLLEFYSIVPEYAKFYDWILCN SVYELDSAALKLIPNILPVGPLLASNYLGTFAGNFWPEDSTCIEWLDKQTSSSVIYVA FGSTTMANMEQLEELALGLELTGHPFLWVVRSDFMDGSLAKFPDGFINRVAKRAKFVE WAPQEKVLAHPSVACFMSHCGWNSTMEGLSMGIPFLCWPYFADQFCNKNYICDVWKIG LGLAKGASGIVTRHEISTKIKTLLSSDAIKANALHIKELARKSFNEGGSSFKNFNNFI EHIKSL" mobile_element complement(20761452..20761560) /note="source:scaffold_8_CACTA_0859 15826 15934" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20765583..20767098 /note="source:CACAO_M_S_E32342_F17_scaffold_3 1 1516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20767113..20767197) /note="source:INTACT1432F_F101_scaffold_9-int 1550 1624" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 20768401..20777550 /note="source:INTACT375F_F353_scaffold_3-int 1 9150" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20776422..20777762 /locus_tag="TCM_014211" /note="dbxref CacaoGD:Thecc1EG014211" mRNA 20776422..20777762 /locus_tag="TCM_014211" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024352t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.69 coverage" CDS 20776942..20777385 /locus_tag="TCM_014211" /note="paralog of Thecc1EG024352t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22034.1" /translation="MKGMDELNMQMIQLKSSISKMGPLGPTPPPNSGLPLSTYFQPAL FRLTFQPMNIGLRPSLHPCPSTFQPPSQQALRAQLFTPSPITPAPSLGVIQKQSKKKQ HKQLDPIPISYGELFHQLVQDHLVVAMPIEPLKPPYPKWYNPNAR" mobile_element 20777651..20779036 /note="source:INTACT375F_F353_scaffold_3-int 9151 10536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20779137..20779444 /note="source:INTACT375F_F353_scaffold_3-int 10537 10844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20779859..20786235 /note="source:INTACT375F_F353_scaffold_3-int 10845 17221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20791232..20795034 /note="source:CACAO_M_E22791_F10_scaffold_3 1 3803" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(20796060..20798213) /locus_tag="TCM_014213" /note="dbxref CacaoGD:Thecc1EG014213" mRNA complement(join(20796060..20796294,20796377..20796458, 20797829..20797929,20798052..20798213)) /locus_tag="TCM_014213" /product="UPF0139 membrane protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s06700.1" /inference="similar to AA sequence:TAIR:AT5G07960.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2354t3" CDS complement(join(20796395..20796458,20797829..20797929, 20798052..20798210)) /locus_tag="TCM_014213" /codon_start=1 /product="UPF0139 membrane protein" /protein_id="EOY22035.1" /db_xref="TAIR:AT5G07960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SD88" /translation="MSSHNNNSASVNDPRQPSAAKPFVAQPVSPQDLPVDYSGFIAVV FGIAGVMFRYKLSSWLAIIFCAQSLANMRNVENDLKQISMAMMFAIMGLVTNYLGPAR PGTQS" gene 20798981..20802841 /locus_tag="TCM_014214" /note="dbxref CacaoGD:Thecc1EG014214" mRNA join(20798981..20799376,20799487..20799571, 20799903..20799944,20800350..20800518,20801073..20801125, 20801250..20801471,20802283..>20802314) /locus_tag="TCM_014214" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007889001" /inference="similar to AA sequence:Phytozome:GSVIVT01007889001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc645t1; inference alignment:Newbler:10:TSA:cgbaB_g09482t00001" mRNA join(20799113..20799376,20799487..20799571, 20799903..20799944,20800350..20800518,20801073..20801125, 20801250..20801471,20802295..20802341,20802502..20802841) /locus_tag="TCM_014214" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007889001" /inference="similar to AA sequence:Phytozome:GSVIVT01007889001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09482t00001; inference alignment:Newbler:10:TSA:cgbaB_g09482t00001" CDS join(20799171..20799376,20799487..20799571, 20799903..20799944,20800350..20800518,20801073..20801125, 20801250..20801471,20802295..20802341,20802502..20802556) /locus_tag="TCM_014214" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22036.1" /db_xref="Phytozome:GSVIVT01007889001" /db_xref="TAIR:AT5G07950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LA67" /translation="METPEPKSQSSSSSPMPPSSLARQWRIAAQRNLRNQWSKMASNR QQWLSSSSSARTHATSLVNAYLSQKYMPLMELGALKDMPDIRNKASFKLFEQQELHRS KVLSSYKDMVAVVMHMVDASKSVRSFLKVASSSSLVQFSSSSEDINDTGDCGGIAVFR FWSISPFEKLAEELSQMFKLELSLKRFLLLELLSIGCEVSQVNRLCWSDELYPGEFSD LKVCNLYSEETSEPVHPRLKDCKFDMPAFQCNRHPDHEILQVYITTWLAEVNIDGHRV DEIFAVIGEEMHISLS" CDS join(20799171..20799376,20799487..20799571, 20799903..20799944,20800350..20800518,20801073..20801125, 20801250..20801471,20802283..>20802312) /locus_tag="TCM_014214" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY22037.1" /db_xref="Phytozome:GSVIVT01007889001" /db_xref="TAIR:AT5G07950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LA67" /translation="METPEPKSQSSSSSPMPPSSLARQWRIAAQRNLRNQWSKMASNR QQWLSSSSSARTHATSLVNAYLSQKYMPLMELGALKDMPDIRNKASFKLFEQQELHRS KVLSSYKDMVAVVMHMVDASKSVRSFLKVASSSSLVQFSSSSEDINDTGDCGGIAVFR FWSISPFEKLAEELSQMFKLELSLKRFLLLELLSIGCEVSQVNRLCWSDELYPGEFSD LKVCNLYSEETSEPVHPRLKDCKFDMPAFQCNRHPDHEILQFSLQVYITTW" gene complement(20803692..20815411) /locus_tag="TCM_014215" /note="dbxref CacaoGD:Thecc1EG014215" mRNA complement(join(20803692..20804527,20805437..20805544, 20805649..20805896,20805991..20806039,20806233..20808149, 20808700..20808812,20808966..20811574,20811708..20811958, 20812070..20812127,20815005..20815411)) /locus_tag="TCM_014215" /product="Dentin sialophosphoprotein-related, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05850.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s05850.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc321t13" CDS complement(join(20804293..20804527,20805437..20805544, 20805649..20805896,20805991..20806039,20806233..20808149, 20808700..20808812,20808966..20811574,20811708..20811900)) /locus_tag="TCM_014215" /codon_start=1 /product="Dentin sialophosphoprotein-related, putative" /protein_id="EOY22038.1" /db_xref="Phytozome:POPTR_0012s05850.1" /db_xref="TAIR:AT5G07980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLP9" /translation="MPGNEVGDRIHNFLGQESLSQGQHHSQVIDGTWPGLSNNLWVGS QRQVGGPLVSSLKNFSVNQLAESDRGHGGQSSSLQHGLSFTQSAFRPEIARSQSQNQP PFVNGYMQGHQSFQARQGETNFLGVDTASRGLSALDSQIGNSPDLHKKNSLRLESNES PVNYDFFGGQQQISGQHPGMIQPLPRQQSGMTDVQVLQQNAMLKQMQEFQRQQLQKPQ FQLPEARQLSSANQVSSVVKQGSGSLSPAPINGVPVHDATNYSWQPEHMTPNANWLQH GASPAMLGSSSGFMFSPEQGQVRLMGLVPQQVDPSFFGISSSGARGNPYQYSSVQMDK SIMQQVPASSNSSPGNQYAMFPDQVGLQDGASVSRQGDPGKNMFGAAAGQGLNSGFHS ENLQQMAIQPKNALMQESRGRQEHLGPSETSLEKSVIQAAPSANVATLDPTEEKILFG SDDSVWDIFGKSASMGSVLDGTDSLGPFPSVQSGSWSALMQSAVAETSSNDIGVQEEW SGLGVQNSEPPSGSMQSSIVNDGSKQQSAWADNNLQNASMLNSKPFPMPTDANINLDF CSVPGVQQLGVQTANEQAGRMQNDLSQRFVQQLTEERSKWLDRSPLQKPVAESAQLFG NVAQSPDMQVSPKNISGHQQGIAVYNPRGLPHNKPNGWNFIESASHSGGAISKNQDIE SSLQPSQNSDQKGAMYEERGHGSGLGHPVPDANIESGNVNSGLGSPQVNREGSDLNNF AAITDSGMTRVTKESCRQLPNSNNLNLWKSVDSKGNSGLSRVPSKYQQNQDKGPQTFD STGNSCLDKGASVTKILDNPNVKETSNDSFRSNISHHNSTGGIRDNVWLDANDPRGGK QKSSVHVSRKPSGNRRFQYHPMGDLDMEVEPSYGTKSVTHSQAISQHVSQGMKGHDQV YFGQSKFTGHAVGESTEAEKGRFPGIQVDGVPSKSSNPDSAPDRSFGGFVPNRTAPMS QNMLELLQKVDQPSERGTATHLSSSERNQSSEMPDAETSDGSVGQFQHNRPSASQGFG LQLGPPSQRFPIPDRANSSQSSPQGVNSLNSVHVSSEVGRKGQTWLGPTASVRSSTHG PLHGEIRDNVSNVSGQTSNKASQCNIQGNVSADFTSDYPYLKSHLQNQHVTGVASQVT PNESVNAPFGGLASQSKQANDFCERAQTSQLGRKSAPHIPKIAPDNDLASSSETSRPS SSNQNHARDPGQQFPVLEAMPAYQPSAPSESLQQGAFTKMLPNVWTNVSAPQHLLGAQ SSRSSQNFFKSHPQSNINSETTLPGIKKLDDQIARAGVSGQSGFPAGSAKPQSFVGEE QPAKAQQVLPENDASQNPAITQRDIEAFGRSLSPNSAVHQNYSLLHQVQAMKNTETDP SSRSVKRFKGPDSVLDAQQQESSQGAEQLSYGSDTMMRDTPINRPLVPSGDPKMLRFS SSTGDNREAHLSSNDILAFARNDSQHFHNGNNSAANLRGEHSQISPQMAPSWFDRYGT FKNGQMLPIYDARKIAMLKATEKPFIVGRPSSDSLHAFHSSEQVNAAADTSQLDNAQQ SSNLMLIPSEHISPHSLPPDIANQNLVVVRAKKRKSMTFELLPWHREMTQGSQRPQNI SVAEVGWAHAANRLIEKVEDEPEMIEDWPPVLRSKRRLILTTHLMQQLLCAPSRVVLS ADASKNYETVAYFVARSALGDACSTAYIPESDTAVPADCESIISEKFKMSERNGNQSI LKAAEEFISRAKKLENDLQSLDKRASILDLRVECQDLEKFSVINRFAKFHGRGQADGA EASSSSDAIVSAHKFFPRRYVTALPMPRNLPDRVQCLSL" mobile_element complement(20815673..20816248) /note="source:scaffold_1_CACTA_0009 13257 13833" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20815958..20826832 /note="source:CACAO_M_E33977_F20_scaffold_4 5405 16542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20828163..20829978) /note="source:scaffold_2_CACTA_0276 8491 10312" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20830385..20830882) /note="source:scaffold_2_CACTA_0276 5902 6399" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20830883..20833605 /note="source:CACAO_M_E22792_F73_scaffold_3 1 2723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20833606..20834072) /note="source:scaffold_2_CACTA_0276 5427 5906" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20833950..20834190) /note="source:CACAO_M_E14537_F4_scaffold_3 8078 8318" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20834196..20835825) /note="source:CACAO_M_E14537_F4_scaffold_3 3760 5386" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20835127..20835908 /note="source:CACAO_M_E3654_F4_scaffold_1 3419 4196" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20835890..20836062) /note="source:INTACT453_F4_scaffold_9-int 3647 3820" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20836063..20838825 /note="source:CACAO_M_E3654_F4_scaffold_1 4699 7476" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20838824..20840149 /note="source:INTACT35_F17_scaffold_5-int 2969 4298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20841157..20844193) /note="source:CACAO_M_E33018_F264_scaffold_4 1 3047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20844194..20844932 /note="source:INTACT10_F4_scaffold_6-int 1123 1863" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20845457..20847900) /note="source:CACAO_M_E71354_F42_scaffold_10 669 3115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20848001..20849013 /note="source:CACAO_M_E56778_F42_scaffold_8 2383 3395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20849014..20849421 /note="source:CACAO_M_E52427_F42_scaffold_7 1 408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20850574..20851073 /note="source:CACAO_M_E52427_F42_scaffold_7 1564 2063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20851515..20852123 /note="source:scaffold_4_CACTA_0498 3064 3672" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20852124..20854953 /note="source:CACAO_M_S_E122122_F42_scaffold_10 1675 4511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20855054..20856738) /note="source:CACAO_M_E58440_F42_scaffold_9 2186 3863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20856839..20858998) /note="source:CACAO_M_S_E4987_F42_scaffold_1 1 2161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20861509..20862623) /note="source:CACAO_M_S_E5464_F76_scaffold_1 4631 5728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20862620..20865600 /note="source:CACAO_M_E48538_F49_scaffold_6 8120 11104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20865596..20869005) /note="source:CACAO_M_S_E5464_F76_scaffold_1 1238 4644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20869001..20870517) /note="source:CACAO_M_S_E4911_F76_scaffold_1 11986 13502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20870618..20871112 /note="source:CACAO_M_E22398_F15_scaffold_3 1092 1586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20878630..20879219) /note="source:CACAO_M_S_E4911_F76_scaffold_1 4157 4746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20879496..20879967 /note="source:CACAO_M_E4554_F15_scaffold_2 2167 2638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20880068..20880482) /note="source:CACAO_M_S_E4911_F76_scaffold_1 2970 3384" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20880482..20881723 /note="source:CACAO_M_S_E4911_F76_scaffold_1 15024 16262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20883571..20883682) /note="source:CACAO_M_E69237_F82_scaffold_9 3075 3187" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20883671..20886800 /note="source:CACAO_M_E12798_F82_scaffold_3 175 3303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20883683..20884267) /note="source:INTACT405F_F91_scaffold_4-int 6905 7604" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20887317..20890082) /note="source:CACAO_M_E44709_F9_scaffold_6 4613 7376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20892808..20893269) /note="source:CACAO_M_E53587_F207_scaffold_8 19869 20331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20900963..20901388) /note="source:CACAO_M_E58894_F15_scaffold_9 1 428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20901389..20901566) /note="source:CACAO_M_E52541_F82_scaffold_7 9508 9685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20901567..20902258) /note="source:INTACT214_F33_scaffold_8-int 10286 10976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20904377..20905409 /note="source:CACAO_M_S_E52605_F82_scaffold_5 672 1688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20905395..20905941) /note="source:INTACT1784F_F24_scaffold_10-int 4355 4889" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20905940..20907189 /note="source:CACAO_M_E5899_F5_scaffold_2 13039 14295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20907186..20908814 /note="source:CACAO_M_E22265_F82_scaffold_3 1664 3315" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20908677..20908830 /note="source:INTACT405F_F91_scaffold_4-int 7468 7618" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20916164..20918036) /note="source:CACAO_M_E22484_F328_scaffold_3 8040 9912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20918037..20919991 /note="source:CACAO_M_E22807_F15_scaffold_3 1 1946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20920728..20921152 /note="source:CACAO_M_E22807_F15_scaffold_3 1947 2371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20921153..20922080 /note="source:CACAO_M_S_E64023_F13_scaffold_5 18723 19649" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20922674..20923793) /locus_tag="TCM_014224" /note="dbxref CacaoGD:Thecc1EG014224" mRNA complement(join(20922674..20923018,20923183..20923329, 20923598..20923793)) /locus_tag="TCM_014224" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035676t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(20922842..20923018,20923183..20923329, 20923598..20923609)) /locus_tag="TCM_014224" /note="paralog of Thecc1EG035676t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22039.1" /translation="MAGPLSKVRKVDEDVVTVRQLRWVMWKHSRDMLELKGSIQSLKD AMQTLEDHIGDAFVQHDELQYDYANQNDHGQDDELDVDVPAIDHDGVGAEGDNVPHAD EVVGRDGNL" mobile_element 20926929..20927830 /note="source:CACAO_M_S_E118676_F14_scaffold_9 1 902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20927868..20928157 /note="source:INTACT39F_F22_scaffold_1-int 3568 3841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20928148..20929694 /note="source:INTACT39F_F22_scaffold_1-int 4227 5735" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20928392..20929490 /locus_tag="TCM_014225" /note="dbxref CacaoGD:Thecc1EG014225" mRNA join(20928392..20928608,20928723..20929292, 20929443..20929490) /locus_tag="TCM_014225" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043574t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00025t00002_G2" CDS join(20928477..20928608,20928723..20928953) /locus_tag="TCM_014225" /note="paralog of Thecc1EG043574t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22040.1" /translation="MKRKKERKNRERGRAKRMVLLHFEEGKREFLLQFWRKKKAENFE LEILKVLLPLKGSKVLPICAEKLELFAANLCRKIGAVCAKKLELFVAEKLELFVQKNW SYLLPICAEKLDSIVLPI" mobile_element 20929795..20931408 /note="source:INTACT39F_F22_scaffold_1-int 5762 7381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20934888..20934945 /note="source:INTACT39F_F22_scaffold_1-int 7377 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20935706..20936135) /note="source:CACAO_M_E22186_F143_scaffold_3 10472 10906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20937591..20937671 /note="source:INTACT563_F255_scaffold_10-int 17197 17276" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20937627..20938390 /note="source:INTACT39F_F22_scaffold_1-int 3567 4308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20939871..20941498 /note="source:INTACT39F_F22_scaffold_1-int 5801 7435" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20941488..20941535) /note="source:CACAO_M_E59093_F12_scaffold_9 10687 10734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20941494..20948713 /note="source:CACAO_M_S_E15589_F14_scaffold_2 2951 10193" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20950801..20959739 /locus_tag="TCM_014228" /note="dbxref CacaoGD:Thecc1EG014228" mRNA join(20950801..20951339,20952137..20952477, 20952733..20952865,20952976..20953161,20953313..20953489, 20953829..20953960,20955696..20955875,20955961..20956092, 20956310..20956414,20956500..20956757,20957804..20957961, 20958857..20958986,20959534..20959739) /locus_tag="TCM_014228" /product="Leo1-like family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007883001" /inference="similar to AA sequence:Phytozome:POPTR_0012s06710.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8566t1" mRNA join(20950801..20951339,20952137..20952477, 20952733..20952865,20952976..20953161,20953313..20953489, 20953829..20953960,20955696..20955875,20955961..20956092, 20956310..20956414,20956500..20956757,20957804..20957965, 20958857..20959465) /locus_tag="TCM_014228" /product="Leo1-like family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007883001" /inference="similar to AA sequence:Phytozome:POPTR_0012s06710.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b013754t1a3; alternateUTRof:Thecc1EG014228t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8566t1" mRNA join(20950801..20951339,20952137..20952477, 20952733..20952865,20952976..20953161,20953313..20953489, 20953829..20953960,20955696..20955875,20955961..20956092, 20956310..20956414,20956500..20956757,20957804..20958463) /locus_tag="TCM_014228" /product="Leo1-like family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007883001" /inference="similar to AA sequence:Phytozome:POPTR_0012s06710.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b013754t1a2; alternateUTRof:Thecc1EG014228t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8566t1" CDS join(20951226..20951339,20952137..20952477, 20952733..20952865,20952976..20953161,20953313..20953489, 20953829..20953960,20955696..20955875,20955961..20956092, 20956310..20956414,20956500..20956757,20957804..20957938) /locus_tag="TCM_014228" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Leo1-like family protein isoform 1" /protein_id="EOY22041.1" /db_xref="Phytozome:POPTR_0012s06710.1" /db_xref="TAIR:AT5G61150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GT16" /translation="MGEEKRHQMMQNLFGDQSEEEEEIDSEHESNPHPNYASDEAEGA MEPEGEGEAEVEGHDEAEVESDGDIRDVEPDPGESEGEREQSSQEVDIGDQREESEAK DTDSDDKEEYGQRVVTSRRRDVIESGSERSEENHYPDNEDEEVDQAISPSKSLGEKDQ NHLSHSAAEIRDVFGDSDDEEAEEYAVRHEIEQDENRSPMEEEGSFGKSPRPEDMVHD EDAHYESDDEHVEVKQKEKPVGPPLELEVPLRPGPAHPTKMNMIKVSNIMGIDPKPFD PKTYVEEDTFVTDESGSKKRIRLENNIVRWRTIRNKDGTASYESNARFVRWSDGSLQL LIGNEVLDISVQEAQHDQSHLFLRHGKGILQSQGRILRKMRFMPSSLSSNSHRLLTAL VDSRHKKVYKVKNCITDIDPEREKEEKEKAENQTIRANVLLNRKREKVNRKYTQTVER KRQLSTGYLEGALDEDDEMDYNDSRRSRRRFEEDLEVEARAEKRIMNAKKSQGYRDIP RKSSLSDVKSSRRPIDFSESDREESEYETEGEEDERSPHKKIEGEEPEYDEEDEEEEE ERDDEVDANRASEEEEEEAAEPRQKVKESVGIMKRKGIESDEDSPPRKAPTHRRMAVV YDSDEE" CDS join(20951226..20951339,20952137..20952477, 20952733..20952865,20952976..20953161,20953313..20953489, 20953829..20953960,20955696..20955875,20955961..20956092, 20956310..20956414,20956500..20956757,20957804..20957938) /locus_tag="TCM_014228" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Leo1-like family protein isoform 1" /protein_id="EOY22042.1" /db_xref="Phytozome:POPTR_0012s06710.1" /db_xref="TAIR:AT5G61150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GT16" /translation="MGEEKRHQMMQNLFGDQSEEEEEIDSEHESNPHPNYASDEAEGA MEPEGEGEAEVEGHDEAEVESDGDIRDVEPDPGESEGEREQSSQEVDIGDQREESEAK DTDSDDKEEYGQRVVTSRRRDVIESGSERSEENHYPDNEDEEVDQAISPSKSLGEKDQ NHLSHSAAEIRDVFGDSDDEEAEEYAVRHEIEQDENRSPMEEEGSFGKSPRPEDMVHD EDAHYESDDEHVEVKQKEKPVGPPLELEVPLRPGPAHPTKMNMIKVSNIMGIDPKPFD PKTYVEEDTFVTDESGSKKRIRLENNIVRWRTIRNKDGTASYESNARFVRWSDGSLQL LIGNEVLDISVQEAQHDQSHLFLRHGKGILQSQGRILRKMRFMPSSLSSNSHRLLTAL VDSRHKKVYKVKNCITDIDPEREKEEKEKAENQTIRANVLLNRKREKVNRKYTQTVER KRQLSTGYLEGALDEDDEMDYNDSRRSRRRFEEDLEVEARAEKRIMNAKKSQGYRDIP RKSSLSDVKSSRRPIDFSESDREESEYETEGEEDERSPHKKIEGEEPEYDEEDEEEEE ERDDEVDANRASEEEEEEAAEPRQKVKESVGIMKRKGIESDEDSPPRKAPTHRRMAVV YDSDEE" CDS join(20951226..20951339,20952137..20952477, 20952733..20952865,20952976..20953161,20953313..20953489, 20953829..20953960,20955696..20955875,20955961..20956092, 20956310..20956414,20956500..20956757,20957804..20957938) /locus_tag="TCM_014228" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Leo1-like family protein isoform 1" /protein_id="EOY22043.1" /db_xref="Phytozome:POPTR_0012s06710.1" /db_xref="TAIR:AT5G61150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GT16" /translation="MGEEKRHQMMQNLFGDQSEEEEEIDSEHESNPHPNYASDEAEGA MEPEGEGEAEVEGHDEAEVESDGDIRDVEPDPGESEGEREQSSQEVDIGDQREESEAK DTDSDDKEEYGQRVVTSRRRDVIESGSERSEENHYPDNEDEEVDQAISPSKSLGEKDQ NHLSHSAAEIRDVFGDSDDEEAEEYAVRHEIEQDENRSPMEEEGSFGKSPRPEDMVHD EDAHYESDDEHVEVKQKEKPVGPPLELEVPLRPGPAHPTKMNMIKVSNIMGIDPKPFD PKTYVEEDTFVTDESGSKKRIRLENNIVRWRTIRNKDGTASYESNARFVRWSDGSLQL LIGNEVLDISVQEAQHDQSHLFLRHGKGILQSQGRILRKMRFMPSSLSSNSHRLLTAL VDSRHKKVYKVKNCITDIDPEREKEEKEKAENQTIRANVLLNRKREKVNRKYTQTVER KRQLSTGYLEGALDEDDEMDYNDSRRSRRRFEEDLEVEARAEKRIMNAKKSQGYRDIP RKSSLSDVKSSRRPIDFSESDREESEYETEGEEDERSPHKKIEGEEPEYDEEDEEEEE ERDDEVDANRASEEEEEEAAEPRQKVKESVGIMKRKGIESDEDSPPRKAPTHRRMAVV YDSDEE" gene complement(20960220..20963394) /locus_tag="TCM_014229" /note="dbxref CacaoGD:Thecc1EG014229" mRNA complement(join(20960220..20960621,20961778..20962112, 20962992..20963394)) /locus_tag="TCM_014229" /product="Mitochondrial glycoprotein family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29743.m000291" /inference="similar to AA sequence:ricco:29743.m000291" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2698t6" CDS complement(join(20960444..20960621,20961778..20962112, 20962992..20963171)) /locus_tag="TCM_014229" /note="dbxref ricco:29743.m000291" /codon_start=1 /product="Mitochondrial glycoprotein family protein, putative" /protein_id="EOY22044.1" /db_xref="TAIR:AT4G32605.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B6TJH8" /translation="MWRRAVTLTQSKASQSWRAIATSSSKYGSTSASAAAAVDSLLLR SLKDHYLEVSRMTPPPKVSPPSPFTIIKGALDSNGPVLKRTYGKEEISIYVMRLANII HGEGDDPEEEDGINQLFLHVDVSKPGQEDSLHFLCGLYPDALGIHSVSMRPKLETSED VVQSTYNGPVFEDLDQRVRDVLHSFIEERGVNEGLFPFLQAWLYVKDHRNLMRWFKSV GTFINEKKSTDA" gene 20965261..20970146 /locus_tag="TCM_014230" /note="dbxref CacaoGD:Thecc1EG014230" mRNA join(20965261..20965484,20966018..20967191, 20967333..20967514,20967598..20968220,20968310..20968589, 20968708..20968905,20968995..20970146) /locus_tag="TCM_014230" /product="Heat shock protein 101" /inference="alignment:exonerate-protein:2:frave:gene25800" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018702t1" /inference="similar to AA sequence:Phytozome:Glyma05g00540.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03563t00001" CDS join(20966042..20967191,20967333..20967514, 20967598..20968220,20968310..20968589,20968708..20968905, 20968995..20969297) /locus_tag="TCM_014230" /note="paralog of Thecc1EG018702t1" /codon_start=1 /product="Heat shock protein 101" /protein_id="EOY22045.1" /db_xref="Phytozome:Glyma05g00540.1" /db_xref="TAIR:AT1G74310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3L1D0" /translation="MNPDKFTHKTNEALAGAHELAMSNGHAQFTPLHLAATLISDPSG VFYQAISNTGGESAAQAADRVFNQALKKLPSQTPPPDEIPASTSLIKGIRRAQAAQKA RGDTHLAVDQLILGLLEDSQIADLLKEAGVAPARVKSEVEKLRGKEGKKVESASGDTT FQALKTYGRDLVEQAGKLDPVIGRDEEIRRVIRILSRRTKNNPVLIGEPGVGKTAVVE GLAQRIVRGDVPSNLADVKVIALDMGALIAGAKYRGEFEERLKAVLKEVEEAEGKVIL FIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRF QQVYVAEPSVADTISILRGLKEKYEGHHGVRIQDRALVVAAQLSSRYITGRHLPDKAI DLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRKELD DLRDKLQPLMMKYRKEKERIDEIRRLKQKREELLFALQEAERRYDLARAADLRYGAIQ DVESAIAQLEGTTDENLMLTETVGPEHIAEVVSRWTGIPVTRLGQNDKERLIGLAERL HRRVVGQDQAVAAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFD DENLLIRIDMSEYMEQHSVARLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKA HISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGLMGKSSMQVARD RVMQEVRRHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKEVASRLAERGIALAVTD SALDYVLAESYDPVYGARPIRRWLEKRVVTELSRMLVREEIDENSTVYIDAAPDGSDL VYRVEKNGGLVNATTGQKSDVLIQIPSGQTRSDAAQAVKKMKIEEIDDEDDEMDV" mobile_element 20971853..20982883 /note="source:CACAO_M_E22816_F33_scaffold_3 1 11013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20983143..20983204) /note="source:scaffold_3_CACTA_0382 1857 1920" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20985476..20985872) /note="source:INTACT202_F170_scaffold_6-int 10544 10942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20987861..20994539 /note="source:INTACT584_F15_scaffold_3-int 1956 8647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20995887..20997019 /note="source:INTACT51F_F15_scaffold_1-int 10116 11259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20997020..21001998 /note="source:INTACT162_F157_scaffold_6-int 396 5377" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21001996..21004563 /note="source:CACAO_M_E34534_F369_scaffold_5 7845 10481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21004564..21007613 /note="source:INTACT162_F157_scaffold_6-int 5330 8351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21007571..21007757) /note="source:CACAO_M_S_E84840_F51_scaffold_7 8582 8776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21007610..21008127 /note="source:INTACT212_F171_scaffold_10-int 2356 2878" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21008506..21010163 /note="source:CACAO_M_E22820_F265_scaffold_3 1 1658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21012451..21012558) /note="source:CACAO_M_E52278_F17_scaffold_7 3063 3156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21012670..21012774) /note="source:CACAO_M_E11098_F15_scaffold_2 8895 9006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21012947..21016406 /note="source:INTACT214_F33_scaffold_8-int 1 3459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21016383..21019678 /note="source:INTACT214_F33_scaffold_8-int 3617 6911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21019678..21020109) /note="source:CACAO_M_E69760_F9_scaffold_9 9217 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21022029..21022706 /note="source:INTACT201_F33_scaffold_5-int 9839 10516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21022702..21023164) /note="source:scaffold_3_CACTA_0382 6648 7131" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21024771..21025766) /note="source:scaffold_8_CACTA_0859 16513 17507" /mobile_element_type="transposon:TIR/CACTA" gene 21026635..21029147 /locus_tag="TCM_014237" /note="dbxref CacaoGD:Thecc1EG014237" mRNA join(21026635..21026821,21027354..21027396, 21028045..21028146,21028219..21028286,21028688..21029147) /locus_tag="TCM_014237" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(21026730..21026821,21027354..21027396, 21028045..21028146,21028219..21028286,21028688..21028928) /locus_tag="TCM_014237" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22046.1" /translation="MWRLAFPSFITSPKSNFNVSKLDLTYAVKKGIHQIFSYPSAWPL TETNFSQIHHALARNFIPVNQELRISETHPFISRGAFGRFQTHRGEIKVCHSLYKMTW KTSLTYSYTIKYPLNDNTYFLINSIGSRAYTNKTFHLYPSTLFSLPWIAAESCEINGY HIPKGSTLLVNTWAIGRDPNQ" mobile_element complement(21031073..21035285) /note="source:CACAO_on_E28_A_scaffold_2 5 4141" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(21035215..21052248) /locus_tag="TCM_014239" /note="dbxref CacaoGD:Thecc1EG014239" mRNA complement(join(21035215..21036307,21052163..21052248)) /locus_tag="TCM_014239" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039365t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(21035865..21036281) /locus_tag="TCM_014239" /note="paralog of Thecc1EG039365t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22047.1" /translation="MLISEIIDYFKVGTRCDMPKNHALFNPIEEYIIKKLGFKFRNNS WVRKGVVDNPVFDKEGNEGKQSAYHSGLSTAQPSAPISTTFDVEKAFTRLFSFMETMD SRLTACMDLFEVQNQEMLLCQKYLEDQFCSQFSPPS" mobile_element 21036490..21036564 /note="source:CACAO_M_E42589_F12_scaffold_5 11951 12031" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21036503..21036912) /note="source:INTACT167_F5_scaffold_2-int 727 1201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21036854..21036970 /note="source:CACAO_M_E9395_F12_scaffold_2 223 337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21041501..21044359 /note="source:CACAO_M_E22828_F15_scaffold_3 1 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21051728..21058567 /note="source:CACAO_M_E72736_F115_scaffold_10 1 6843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21058560..21059644 /note="source:CACAO_M_E35265_F115_scaffold_5 2035 3121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21059645..21062080 /note="source:CACAO_M_E42530_F72_scaffold_5 4575 7010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21062181..21063167 /note="source:INTACT357_F72_scaffold_9-int 1969 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21067609..21067666) /note="source:CACAO_M_E5899_F5_scaffold_2 20717 20774" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 21067672..21077671 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(21077672..21078294) /note="source:CACAO_M_E9677_F7_scaffold_2 4419 5044" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21078289..21078440 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15581 15733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21078629..21082226) /note="source:INTACT34_F115_scaffold_5-int 1 3461" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21083022..21086065 /locus_tag="TCM_014241" /note="dbxref CacaoGD:Thecc1EG014241" mRNA join(21083022..21083892,21084178..21084624, 21085140..21085753,21085842..21086058) /locus_tag="TCM_014241" /product="Flavonoid 3'-hydroxylase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040896t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07050.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8654t1" mRNA join(21083179..21083892,21084178..21084624, 21085140..21086065) /locus_tag="TCM_014241" /product="Flavonoid 3'-hydroxylase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040896t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07050.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04942t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8654t1" CDS join(21083452..21083892,21084178..21084624, 21085140..21085753,21085842..21085845) /locus_tag="TCM_014241" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040896t1" /codon_start=1 /product="Flavonoid 3'-hydroxylase isoform 1" /protein_id="EOY22048.1" /db_xref="Phytozome:POPTR_0013s07050.1" /db_xref="TAIR:AT5G07990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2XSY8" /translation="MASFLLYSILSAVFLYFIFATLRKRHRLPLPPGPKPWPIIGNLP HMGPVPHHSLAALAKVYGPLMHLRLGFVDVVVAASASVAAQFLKVHDANFSSRPPNSG AKYVAYNYQDLVFAPYGPRWRMLRKISSVHLFSGKALDDFRHVRQDEVGVLVRALADA KTKVNLGQLLNVCTVNALGRVMLGKRVFGDGSGKADPEADEFKSMVVELMVLAGVVNI GDFIPALEWLDLQGVQAKMKKLHKRFDRFLSAILEEHKIKARDGSGQHKDLLSTFISL EDADGEGGKLTDTEIKALLLNMFTAGTDTSSSTVEWAIAELIRHPKILAQVRKELDSV VGRDRLVSDLDLPNLTYFQAVIKETFRLHPSTPLSLPRMASESCEINGYHIPKGATLL VNVWAIARDPDEWKDPLEFRPERFLPGGERPNADVRGNDFEVIPFGAGRRICAGMSLG LRMVQLLAATLVHAFDWELADGLMPEKLNMEEAFGLTLQRAAPLMVHPRPR" CDS join(21083452..21083892,21084178..21084624, 21085140..21085775) /locus_tag="TCM_014241" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040896t1" /codon_start=1 /product="Flavonoid 3'-hydroxylase isoform 2" /protein_id="EOY22049.1" /db_xref="Phytozome:POPTR_0013s07050.1" /db_xref="TAIR:AT5G07990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2XSY8" /translation="MASFLLYSILSAVFLYFIFATLRKRHRLPLPPGPKPWPIIGNLP HMGPVPHHSLAALAKVYGPLMHLRLGFVDVVVAASASVAAQFLKVHDANFSSRPPNSG AKYVAYNYQDLVFAPYGPRWRMLRKISSVHLFSGKALDDFRHVRQDEVGVLVRALADA KTKVNLGQLLNVCTVNALGRVMLGKRVFGDGSGKADPEADEFKSMVVELMVLAGVVNI GDFIPALEWLDLQGVQAKMKKLHKRFDRFLSAILEEHKIKARDGSGQHKDLLSTFISL EDADGEGGKLTDTEIKALLLNMFTAGTDTSSSTVEWAIAELIRHPKILAQVRKELDSV VGRDRLVSDLDLPNLTYFQAVIKETFRLHPSTPLSLPRMASESCEINGYHIPKGATLL VNVWAIARDPDEWKDPLEFRPERFLPGGERPNADVRGNDFEVIPFGAGRRICAGMSLG LRMVQLLAATLVHAFDWELADGLMPEKLNMEEAFGLTLQRAAPLMVHPRPRLSPRAY" mobile_element complement(21087069..21087151) /note="source:CACAO_M_S_E85177_F5_scaffold_7 20165 20245" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21089120..21092357 /locus_tag="TCM_014242" /note="dbxref CacaoGD:Thecc1EG014242" mRNA join(21089120..21089704,21090215..21090406, 21090677..21090709,21091137..21091299,21091396..21091498, 21091622..21091703,21091795..21092105) /locus_tag="TCM_014242" /product="Transmembrane protein adipocyte-associated 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021968001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025954t1" /inference="similar to AA sequence:frave:gene25802" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4434t2" mRNA join(21089144..21089225,21089403..21089704, 21090215..21090406,21091137..21091299,21091396..21091498, 21091622..21091703,21091795..21092357) /locus_tag="TCM_014242" /product="Transmembrane protein adipocyte-associated 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021968001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025954t1" /inference="similar to AA sequence:frave:gene25802" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:PASA:2:TSA:puevd3b013771t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4434t2" mRNA join(21089209..21089704,21090215..21090406, 21091137..21091299,21091400..21091425) /locus_tag="TCM_014242" /product="Transmembrane protein adipocyte-associated 1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021968001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025954t1" /inference="similar to AA sequence:frave:gene25802" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc744t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4434t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc810t7" mRNA join(21089227..21089704,21090215..21090406, 21091137..21091299,21091396..21091703,21091795..21092357) /locus_tag="TCM_014242" /product="Transmembrane protein adipocyte-associated 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021968001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025954t1" /inference="similar to AA sequence:frave:gene25802" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:PASA:2:TSA:puevd3b013771t1a4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4434t2" CDS join(21089426..21089704,21090215..21090406, 21090677..21090709,21091137..21091299,21091396..21091498, 21091622..21091703,21091795..21091872) /locus_tag="TCM_014242" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene25802; paralog of Thecc1EG025954t1" /codon_start=1 /product="Transmembrane protein adipocyte-associated 1 isoform 1" /protein_id="EOY22050.1" /db_xref="TAIR:AT3G05010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94BV6" /translation="MPNNLHQIITNSSISPPPISNINGQDGQSDRQCHGVWYDALLVV PAVLFVVYLAVNAKKNVNKLRNGRSLVLISYFALLWLASGLNLAWCSLQAWQCASGKE IAWNLLSLITTSGFLCLELSLVGFLLQESYANGLEALARTFTISGIIVAVDMLLKMDY IFIDLSGKAIFIFGFGVPLFFDVVGSTHQMKWGLWIIQKLLLTTVYGFILFVPFSKWR EKLPPRPAFYNYVAVMFVVNAISLLACGLATIGIGFGLWLYNLTVICYHLLYLPFLYV TFLADFFQEEDFLLDNAYYSEMKDAGFFDADWD" CDS join(21089426..21089704,21090215..21090406, 21091137..21091299,21091396..21091498,21091622..21091703, 21091795..21091872) /locus_tag="TCM_014242" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene25802; paralog of Thecc1EG025954t1" /codon_start=1 /product="Transmembrane protein adipocyte-associated 1 isoform 2" /protein_id="EOY22051.1" /db_xref="TAIR:AT3G05010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94BV6" /translation="MPNNLHQIITNSSISPPPISNINGQDGQSDRQCHGVWYDALLVV PAVLFVVYLAVNAKKNVNKLRNGRSLVLISYFALLWLASGLNLAWCSLQAWQCASGKE IAWNLLSLITTSGFLCLELSLVGFLLQESYANGLEALARTFTISGIIVAVDMLLKAIF IFGFGVPLFFDVVGSTHQMKWGLWIIQKLLLTTVYGFILFVPFSKWREKLPPRPAFYN YVAVMFVVNAISLLACGLATIGIGFGLWLYNLTVICYHLLYLPFLYVTFLADFFQEED FLLDNAYYSEMKDAGFFDADWD" CDS join(21089426..21089704,21090215..21090406, 21091137..21091299,21091396..21091502) /locus_tag="TCM_014242" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene25802; paralog of Thecc1EG025954t1" /codon_start=1 /product="Transmembrane protein adipocyte-associated 1 isoform 3" /protein_id="EOY22052.1" /db_xref="TAIR:AT3G05010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94BV6" /translation="MPNNLHQIITNSSISPPPISNINGQDGQSDRQCHGVWYDALLVV PAVLFVVYLAVNAKKNVNKLRNGRSLVLISYFALLWLASGLNLAWCSLQAWQCASGKE IAWNLLSLITTSGFLCLELSLVGFLLQESYANGLEALARTFTISGIIVAVDMLLKAIF IFGFGVPLFFDVVGSTHQMKWGLWIIQKLLLTTVYGFILFVPFSKWREKLPPRPAFYN YVAVMFVVNAISLLACGLATIGIGFGLW" CDS join(21089426..21089704,21090215..21090406, 21091137..21091299,21091400..21091422) /locus_tag="TCM_014242" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene25802; paralog of Thecc1EG025954t1" /codon_start=1 /product="Transmembrane protein adipocyte-associated 1 isoform 4" /protein_id="EOY22053.1" /db_xref="TAIR:AT3G05010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94BV6" /translation="MPNNLHQIITNSSISPPPISNINGQDGQSDRQCHGVWYDALLVV PAVLFVVYLAVNAKKNVNKLRNGRSLVLISYFALLWLASGLNLAWCSLQAWQCASGKE IAWNLLSLITTSGFLCLELSLVGFLLQESYANGLEALARTFTISGIIVAVDMLLKAIF IFGFGVPLFFDVVGSTHQMKWGLWIIQKLLLTTVYGFILFVPFSKWREKLPHQHSTTM " gene complement(21092328..21131470) /locus_tag="TCM_014243" /note="dbxref CacaoGD:Thecc1EG014243" mRNA complement(join(21092328..21092652,21092767..21092908, 21093338..21093469,21093537..21093686,21094052..21094222, 21094825..21094992,21095242..21095337,21096855..21096917, 21097014..21097179,21097277..21097344,21098451..21098594, 21098694..21098849,21101051..21101116,21101205..21101396, 21101479..21101628,21109332..21109422,21110179..21110267, 21111379..21111441,21111558..21111683,21112549..21112638, 21113156..21113278,21113395..21113511,21113623..21113826, 21114312..21114392,21114510..21114590,21114689..21114790, 21114874..21115098,21115190..21115345,21115668..21115880, 21116423..21116572,21116910..21117032,21117120..21117185, 21118131..21118196,21118287..21118418,21118505..21118579, 21119610..21119693,21119777..21119929,21120047..21120112, 21125670..21125831,21125922..21126038,21126120..21126191, 21126343..21126402,21126498..21126614,21127735..21128037, 21128120..21128224,21128979..21129044,21129126..21129579, 21130070..21130238,21130351..21130409,21131217..21131470)) /locus_tag="TCM_014243" /product="U5 small nuclear ribonucleoprotein helicase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m003982" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045030t2" /inference="similar to AA sequence:ricco:30138.m003982" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc719t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc719t2" mRNA complement(join(21092767..21092908,21093338..21093462, 21093537..21093686,21094052..21094222,21094825..21094992, 21095242..21095337,21096855..21096917,21097014..21097179, 21097277..21097344,21098451..21098594,21098694..21098849, 21101051..21101116,21101205..21101396,21101479..21101628, 21109332..21109422,21110179..21110267,21111379..21111441, 21111558..21111683,21112549..21112638,21113156..21113278, 21113395..21113511,21113623..21113826,21114312..21114392, 21114510..21114590,21114689..21114790,21114874..21115098, 21115190..21115345,21115668..21115880,21116423..21116572, 21116910..21117032,21117120..21117185,21118131..21118196, 21118287..21118418,21118505..21118579,21119610..21119693, 21119777..21119929,21120047..21120112,21125670..21125831, 21125922..21126038,21126120..21126191,21126343..21126402, 21126498..21126614,21127735..21128037,21128120..21128224, 21128979..21129044,21129126..21129579,21130070..21130238, 21130351..21130409,21131217..21131470)) /locus_tag="TCM_014243" /product="U5 small nuclear ribonucleoprotein helicase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06720.1" /inference="alignment:exonerate- protein:2:ricco:30138.m003982" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045030t2" /inference="similar to AA sequence:ricco:30138.m003982" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc774t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc719t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc723t6" CDS complement(join(21092801..21092908,21093338..21093469, 21093537..21093686,21094052..21094222,21094825..21094992, 21095242..21095337,21096855..21096917,21097014..21097179, 21097277..21097344,21098451..21098594,21098694..21098849, 21101051..21101116,21101205..21101396,21101479..21101628, 21109332..21109422,21110179..21110267,21111379..21111441, 21111558..21111683,21112549..21112638,21113156..21113278, 21113395..21113511,21113623..21113826,21114312..21114392, 21114510..21114590,21114689..21114790,21114874..21115098, 21115190..21115345,21115668..21115880,21116423..21116572, 21116910..21117032,21117120..21117185,21118131..21118196, 21118287..21118418,21118505..21118579,21119610..21119693, 21119777..21119929,21120047..21120112,21125670..21125831, 21125922..21126038,21126120..21126191,21126343..21126402, 21126498..21126614,21127735..21128037,21128120..21128224, 21128979..21129044,21129126..21129579,21130070..21130238, 21130351..21130409,21131217..21131326)) /locus_tag="TCM_014243" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003982; paralog of Thecc1EG045030t2" /codon_start=1 /product="U5 small nuclear ribonucleoprotein helicase isoform 1" /protein_id="EOY22054.1" /db_xref="TAIR:AT5G61140.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNQ1" /translation="MLVQLPRLTNSLREPFDIDQAYLQRKIFLQSRNKATNGNQLDES DLARKIVHQWEEASVEVRQLYKQFIGAVVELIDGELLPEGFREVALTAYRIFSGTVEG DEVAKNINEKKVELQKVIGHGVSYANVQKVACLAQKLSQSQPRDSGDTLVFEKHVNGS DDGSEFGADLIFKAPARFLVDVSLEDVELLGEENTAPSSAFVEGCYDKNGTINYHNAA DSVNFNLSWLRDSCERIVRGSTSQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDS AFETVQDLILHRKELVDAIHHGLSVLKSDKVNPNSRSRMPSYGTQVTVQTESEKQIDK LRRREEKRHRRGTDYAAESDMSAASFSSLLEASERKSPFDDLIGSGQGPNSLAATALP QGTMRKHFKGYEEVIIPPTPTAQMKPGEKLIEIKELDDFAQAAFRGYKSLNRIQSRIF QTVYCTNENILVCAPTGAGKTNIAMISILHEIGQHFKDGYLHKDEFKIVYVAPMKALA AEVTSAFSHRLSPLNMCVKELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLS MLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQF LRVNPETGLFYFDSSYRPVPLSQQYIGISEQNFVARNELLNEICYKKVVDSLRQGHQA MVFVHSRKDTAKTAEKLVELARKYEDLELFKNDAHPQFSLLKKEVVKSRNKDLVQLFE FGVGVHHAGMLRADRGLTERLFSDGILKVLVCTATLAWGVNLPAHTVVIKGTQLYDPK AGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFIS SLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYGIGWDEVIADPSLSLKQ RALVADAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMND SEVIEMVAHSSEFENIVVREEEQNELEMLARTSCPLEVKGGPSNKHGKISILIQLYIS RGSIDTFSLVSDAAYISASLARIMRALFEICLRRGWCEMSLFMLEYCKAVDRQIWPHQ HPLRQFDKDLSPEILRKLEERGADLDRLHEMEEKDIGALIRYGPGGRLVKQYLGYFPW IQLSATVSPITRTVLKVDLVISPDLIWKDRFHGAAQRWWILVEDSENDHIYHSELFTL TKKMARGEPQKLSFTVPIFEPHPPQYFIRAVSDSWLYAEAFYTISFHKLALPEARTTH TELLDLKPLPVTSLGNSTYESLYNFSHFNPIQTQIFHVLYHTDNNVLLGAPTGSGKTI SAELAMLRLFNTQPDMKVIYIAPLKAIVRERMHDWRKRLVSQLGKEMVEMTGDYTPDL MALLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRM RYISSQTERAVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPG KYYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDENPRQFL SMPEEALQMVLSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTS TLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILV HEPKKSFYKKFLYEPFPVESSLREQLHDHINAEIVSGTICHKEDAVHYLTWTYLFRRL MVNPAYYGLESAEDETLSSYLSRLVHSTFEDLEDSGCIKMTEDNVEPMMLGTIASQYY LSYMTVSMFGSNIGPDTSLEVFLHVLSGASEYNELPVRHNEENYNEALSKRVRYMVDQ NHLDDPHVKANLLFQAHFSQLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLTS SIACMHLLQMVMQGLWFDQDSALWMLPCMNNELAGALSKGGISSVQQLLDLPKATLQT VIGNFPASKLCQDLQYFPHIQMKLKLLKKGPESEKSLQLNIRLEKTNLRRNASRAFAP RFPKLKDEAWWLILGNTFTSELYALKRVSFSDRLVTHMELPSDVTTFQGMKLIIVSDC YLGFEQEHSIEKLAAQCLEVGTKTV" CDS complement(join(21093445..21093462,21093537..21093686, 21094052..21094222,21094825..21094992,21095242..21095337, 21096855..21096917,21097014..21097179,21097277..21097344, 21098451..21098594,21098694..21098849,21101051..21101116, 21101205..21101396,21101479..21101628,21109332..21109422, 21110179..21110267,21111379..21111441,21111558..21111683, 21112549..21112638,21113156..21113278,21113395..21113511, 21113623..21113826,21114312..21114392,21114510..21114590, 21114689..21114790,21114874..21115098,21115190..21115345, 21115668..21115880,21116423..21116572,21116910..21117032, 21117120..21117185,21118131..21118196,21118287..21118418, 21118505..21118579,21119610..21119693,21119777..21119929, 21120047..21120112,21125670..21125831,21125922..21126038, 21126120..21126191,21126343..21126402,21126498..21126614, 21127735..21128037,21128120..21128224,21128979..21129044, 21129126..21129579,21130070..21130238,21130351..21130409, 21131217..21131326)) /locus_tag="TCM_014243" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m003982; paralog of Thecc1EG045030t2" /codon_start=1 /product="U5 small nuclear ribonucleoprotein helicase isoform 2" /protein_id="EOY22055.1" /db_xref="TAIR:AT5G61140.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNQ1" /translation="MLVQLPRLTNSLREPFDIDQAYLQRKIFLQSRNKATNGNQLDES DLARKIVHQWEEASVEVRQLYKQFIGAVVELIDGELLPEGFREVALTAYRIFSGTVEG DEVAKNINEKKVELQKVIGHGVSYANVQKVACLAQKLSQSQPRDSGDTLVFEKHVNGS DDGSEFGADLIFKAPARFLVDVSLEDVELLGEENTAPSSAFVEGCYDKNGTINYHNAA DSVNFNLSWLRDSCERIVRGSTSQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDS AFETVQDLILHRKELVDAIHHGLSVLKSDKVNPNSRSRMPSYGTQVTVQTESEKQIDK LRRREEKRHRRGTDYAAESDMSAASFSSLLEASERKSPFDDLIGSGQGPNSLAATALP QGTMRKHFKGYEEVIIPPTPTAQMKPGEKLIEIKELDDFAQAAFRGYKSLNRIQSRIF QTVYCTNENILVCAPTGAGKTNIAMISILHEIGQHFKDGYLHKDEFKIVYVAPMKALA AEVTSAFSHRLSPLNMCVKELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLS MLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQF LRVNPETGLFYFDSSYRPVPLSQQYIGISEQNFVARNELLNEICYKKVVDSLRQGHQA MVFVHSRKDTAKTAEKLVELARKYEDLELFKNDAHPQFSLLKKEVVKSRNKDLVQLFE FGVGVHHAGMLRADRGLTERLFSDGILKVLVCTATLAWGVNLPAHTVVIKGTQLYDPK AGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFIS SLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYGIGWDEVIADPSLSLKQ RALVADAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMND SEVIEMVAHSSEFENIVVREEEQNELEMLARTSCPLEVKGGPSNKHGKISILIQLYIS RGSIDTFSLVSDAAYISASLARIMRALFEICLRRGWCEMSLFMLEYCKAVDRQIWPHQ HPLRQFDKDLSPEILRKLEERGADLDRLHEMEEKDIGALIRYGPGGRLVKQYLGYFPW IQLSATVSPITRTVLKVDLVISPDLIWKDRFHGAAQRWWILVEDSENDHIYHSELFTL TKKMARGEPQKLSFTVPIFEPHPPQYFIRAVSDSWLYAEAFYTISFHKLALPEARTTH TELLDLKPLPVTSLGNSTYESLYNFSHFNPIQTQIFHVLYHTDNNVLLGAPTGSGKTI SAELAMLRLFNTQPDMKVIYIAPLKAIVRERMHDWRKRLVSQLGKEMVEMTGDYTPDL MALLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRM RYISSQTERAVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPG KYYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDENPRQFL SMPEEALQMVLSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTS TLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILV HEPKKSFYKKFLYEPFPVESSLREQLHDHINAEIVSGTICHKEDAVHYLTWTYLFRRL MVNPAYYGLESAEDETLSSYLSRLVHSTFEDLEDSGCIKMTEDNVEPMMLGTIASQYY LSYMTVSMFGSNIGPDTSLEVFLHVLSGASEYNELPVRHNEENYNEALSKRVRYMVDQ NHLDDPHVKANLLFQAHFSQLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLTS SIACMHLLQMVMQGLWFDQDSALWMLPCMNNELAGALSKGGISSVQQLLDLPKATLQT VIGNFPASKLCQDLQYFPHIQMKLKLLKKGPESEKSLQLNIRLEKTNLRRNASRAFAP RFPKMKHGG" gene 21102641..21104613 /locus_tag="TCM_014244" /note="dbxref CacaoGD:Thecc1EG014244" mRNA join(21102641..21103060,21103165..21103205, 21103525..21103602,21103685..21103776,21103857..21103919, 21104152..21104613) /locus_tag="TCM_014244" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage" CDS join(21102849..21103060,21103165..21103205, 21103525..21103602,21103685..21103776,21103857..21103919, 21104152..21104412) /locus_tag="TCM_014244" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22056.1" /translation="MASKGSKSVEVVSSHHKIVDVMLARDGSNFVEWKFLVKVNAKRL GKEAHFTEPYQNKENATKLWITDDGRLYKEYDETVQFITRVDKEKDQVGEKAILKEVM EVQEYVDNRATTTISTPSKFAHIASQVGDFATPHLKRRTLSEVIPQHVFLLPLIARSL TQDLLTWKITGSGSESNGLLLLDEVVVALPSAGASIACCNDLAHFQLHCQLGHPSLSV LKKMHVDLTSLPSLPYETCEFAKHHHLPCV" gene 21106189..21108959 /locus_tag="TCM_014245" /note="dbxref CacaoGD:Thecc1EG014245" mRNA join(21106189..21106361,21106847..21107065, 21107391..21107481,21107590..21107768,21107867..21107986, 21108084..21108211,21108417..21108959) /locus_tag="TCM_014245" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage" CDS join(21106248..21106361,21106847..21107065, 21107391..21107481,21107590..21107768,21107867..21107986, 21108084..21108211,21108417) /locus_tag="TCM_014245" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY22057.1" /db_xref="TAIR:AT4G23160.1" /translation="MVYLMADNRELDDDNNGGRQWLWRRTVANLRRERGRGGDMRPHV TKLDTCSLKCIFLGYSRTQKGYRCYSLELSKYLVSCDITFFEYNPYFDGPPSSVSKTE SVDDFFIYKWAAMEEEMSALETHGTWDLVCLPSSKQAIRYKFSPVTKLTSIRIFLSLA TTHHWPLYQLDVNNAFLHNELQEEVYMVQPPGFIAHGEFGKSSCDHAVFFRHTDNACI LLVVYVDGIVITRSDQADIHDLKYVLDLLEDVGLLEVQPCETTMDSSVKLTAEERKAF ADPKKHR" mobile_element complement(21108819..21108873) /note="source:CACAO_M_E52863_F29_scaffold_8 233 287" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21120341..21125296 /note="source:INTACT72_F29_scaffold_3-int 1 4956" /mobile_element_type="retrotransposon:LTR/Copia" gene <21123733..>21123911 /locus_tag="TCM_014246" /note="dbxref CacaoGD:Thecc1EG014246" mRNA <21123733..>21123911 /locus_tag="TCM_014246" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene29253.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038192t1" /inference="similar to AA sequence:Phytozome:Glyma05g10880.1" /note="quality class is strongpartial-expresste, express is strong, homology is paralog strong, intron is none, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc9Loc3966t1" CDS <21123735..>21123911 /locus_tag="TCM_014246" /note="paralog of Thecc1EG038192t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22058.1" /db_xref="Phytozome:Glyma05g10880.1" /translation="VDYTETFAPVAKLNTIRVLLSLAANLDWALHQMDVKNAFLNGEL DEEVYMDLPPGFEGA" mobile_element 21134135..21134369 /note="source:CACAO_M_E950_F15_scaffold_1 1 212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21134159..21134395) /note="source:CACAO_M_S_E5469_F15_scaffold_1 2600 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21134371..21137327) /note="source:CACAO_M_E34067_F15_scaffold_4 1 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21137328..21139961) /note="source:CACAO_on_E28_A_scaffold_2 1 2686" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(21140287..21141910) /locus_tag="TCM_014250" /note="dbxref CacaoGD:Thecc1EG014250" mRNA complement(join(21140287..21141188,21141626..21141910)) /locus_tag="TCM_014250" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028668t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(21140585..21141188,21141626..21141648)) /locus_tag="TCM_014250" /note="paralog of Thecc1EG028668t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22059.1" /translation="MLISPNASSNYSTITTENLWFLFNIKLNCRIDLTKFIMDDMVRT IQGDIKNLLYGMLISEIIDYFNVDTRCDPSKNHALFNLIDEHSIKKLDFEFRNNNWSR KGAVNNPIFDEEENKGESSAYRSGLFIAQPSAPISTTFDVEQAFIRLFLFMKTMDFRL TTRMNLVEVQNHEMLKRQKDLKDPFRSQVPHHHAFSLETFILLHFWIV" mobile_element 21143162..21150393 /note="source:INTACT1_F64_scaffold_3-int 1 7232" /mobile_element_type="retrotransposon:LTR/Copia" gene 21155746..21160639 /locus_tag="TCM_014254" /note="dbxref CacaoGD:Thecc1EG014254" mRNA join(21155746..21155941,21156577..21156816, 21156940..21156973,21157199..21157270,21157819..21157899, 21159764..21160639) /locus_tag="TCM_014254" /product="Plasmodesmata callose-binding protein 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g00470.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc6374t1" CDS join(21155890..21155941,21156577..21156816, 21156940..21156973,21157199..21157270,21157819..21157899, 21159764..21160037) /locus_tag="TCM_014254" /codon_start=1 /product="Plasmodesmata callose-binding protein 3" /protein_id="EOY22060.1" /db_xref="TAIR:AT1G18650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ86" /translation="MAALVLAVLILAMTGRSSATWCVCKDNVGDASLQKTLDYACGAG ADCNAIHSNGPCFNPNSVKAHCNYAVNSYFQKKGQAQGSCDFAGTATVTASDPSSTGC AYPSSVSSQPVNGAPLVVRTINRAFGTVCQNAFVLHFHIPLGCNGHLAFHYWRGAKKS AASSTTPTTPVTTTTPSTTTPSTMNPSTNTPTSTTPYGTTTPTGVLGGVGTGLGPSGA GINTDYSDGGYRLQGLSFFTTLLFSGLMLLLG" gene 21165563..21172276 /locus_tag="TCM_014255" /note="dbxref CacaoGD:Thecc1EG014255" mRNA join(21165563..21165715,21165863..21166536, 21167205..21167357,21168209..21168367,21168641..21168716, 21169117..21169350,21169449..21169573,21170118..21170824, 21170909..21172276) /locus_tag="TCM_014255" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30138.m003979" /inference="similar to AA sequence:ricco:30138.m003979" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS join(21165975..21166536,21167205..21167357, 21168209..21168367,21168641..21168716,21169117..21169350, 21169449..21169573,21170118..21170824,21170909..21171763) /locus_tag="TCM_014255" /note="dbxref ricco:30138.m003979" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22061.1" /translation="MIGSYVVNCDICLTFNSKNNVDSFGSYCTRSVVTDMHEDWVCEV CLSENDIDSLKPGQAEDVLDSSRKHCFELGRQVTCKRPKAVETGKVKFLPTEEVIKLS SGSPRKEFPLKSNFRSKPVPAKLTASLSKRSFMGPKTVGPSFNPIKVRSNPSFSQLGS STPPRCGGLQIISSISQHAVKTSKESKEEKAPQALAKIYSSNEEPVSSVMSAKEVKTV NAKAMNKMKETLSASSTLTPKSDLVVPNKENVCKGQISDAILPNNKQTILPTKSEETM RSSRPSPSRLHTTIVERESWNIRLKVSLYRPHLPALHTTWMGGFKFLDVATPGEFYGG FLARPPCRVHRKAYEFSQKMPPVLQVNLLHQCHLQADILQNGCLDLCDIALYFYPVDY TERSQQNYSQLFQLMEIKNSVLTSYNDGVKLLIFTSTQLHLDTRDLFTRSNTDFFCGV FCHAKDNQMKVHQELPSLVSPLEYTHDDNANMNSSEAVDMDIDMVGGKIVGISDTAVS KASTRDFNEWAVKETLDAITNRKFSTVLEDLDSVIQPISLEFEQECCNDSDLPSKNTE KIKSTLTLEPLEHPLESSLCRLPSSMGETRIPPGFEGLMKLNSSNRAPKAPSAEEKNF LNERRIVSQVKDEIGCQGILQIAFGVSSPQRQGSIEDYSSRGSQKQHQVLACHLANDP SAACPPPCLSVKGTKVGSVIKIEGNDNEKPFEMREKKGLQSTLFLSKDKSKMVAGSFN GPCAVEVKAEMQAVDDRVNNSHGLHARLPSNMETSQCLRPVASTRVNLSVAGRSRGNT GAASAGGLIRDKLGKWIVGYNLNLGRCSSLSTDLWALFQGIKFTWDRGYRKVLVESDC VAAVECLRKAPSLLNSNIALIKSCRDLLNRKWDCKVHPIRREENLCANWLATHVEGCS PGLSIIKEPPLELNPLLENDCVRVARAHDSPSAVSFSDRKSH" gene 21172543..21178086 /locus_tag="TCM_014256" /note="dbxref CacaoGD:Thecc1EG014256" mRNA join(21172543..21172838,21173107..21173308, 21173389..21173535,21173664..21173776,21174059..21174270, 21174373..21174437,21174651..21174821,21174979..21175059, 21175541..21175673,21175756..21175877,21176104..21176297, 21176446..21176575,21176676..21176740,21176857..21178086) /locus_tag="TCM_014256" /product="Histone deacetylase 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s09180.1" /inference="similar to AA sequence:ricco:30138.m003978" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4389t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4389t1" mRNA join(21172543..21172838,21173107..21173308, 21173389..21173535,21173664..21173776,21174059..21174270, 21174373..21174437,21174651..21174821,21174979..21175059, 21175541..21175673,21175756..21175877,21176104..21176297, 21176446..21176575,21176857..21178086) /locus_tag="TCM_014256" /product="Histone deacetylase 5 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s09180.1" /inference="similar to AA sequence:ricco:30138.m003978" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:PASA:2:TSA:puevd3b013783t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4389t1" mRNA join(21172569..21172838,21173107..21173308, 21173389..21173535,21173664..21173776,21174059..21174270, 21174373..21174437,21174651..21174821,21174979..21175059, 21175541..21175673,21175756..21175877,21176104..21176297, 21176446..21176575,21176676..21176886) /locus_tag="TCM_014256" /product="Histone deacetylase 5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s09180.1" /inference="similar to AA sequence:ricco:30138.m003978" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc954t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4389t1" CDS join(21172663..21172838,21173107..21173308, 21173389..21173535,21173664..21173776,21174059..21174270, 21174373..21174437,21174651..21174821,21174979..21175059, 21175541..21175673,21175756..21175877,21176104..21176297, 21176446..21176575,21176676..21176740,21176857..21177025) /locus_tag="TCM_014256" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003978" /codon_start=1 /product="Histone deacetylase 5 isoform 1" /protein_id="EOY22062.1" /db_xref="TAIR:AT5G61060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RX28" /translation="MEVESAASNSNAKNQRRVGLIYDQRMCKHRTPDDDYHPENPNRI TVIWNRLKLAGIPERCVLLNAKEAEDKYICAVHSKKHVNLIRKISSKRYDSKRNLIAS KLNSIYFNEGSSEAAYLAAGSVIEVAEKVAKGELDSAFALVRPPGHHAEFDEAMGFCL FNNVAIAATFLLDERPELDINKILIVDWDVHHGNGTQKTFWKDPRVLFFSVHRHEFGS FYPANDDGFYTMVGEGPGAGYNINVPWENGQCGDADYLAVWDHILLPVAKEFKPDVII ISAGFDAAVGDPLGGCRVTPYGYSVMLKELMDFAQGRIVLALEGGYNLDSIANSALAC MEVLLEDKPISGFSEAYPFESTWRVIQAVRRKLSAFWPTLAHELPTKLTNQKAPPHIL PLSSESDDEDDEASKIVSADFVAAVEDVVEPLLKLKVEDNHDKVTTASTLWRSELSKS DIWYATFGSNMWKSRFLCYIEGGQVEGMKKSCSGSMDRNPPKDILWKTCPHRLFFGRD FTQTWGPGGVAFLHPQSNSHNKTYMCLYRITLEQFNDVLLQENGPDHDLSSPLFDLNA LNSIPNEGSFSVEAVKRGWYHSVVYLGKENDIPILTMTCPLSTIEKFKSGEIPLRAPC KEYADTLVRGLVEGNQLSEEEARTYIHEASAKTII" CDS join(21172663..21172838,21173107..21173308, 21173389..21173535,21173664..21173776,21174059..21174270, 21174373..21174437,21174651..21174821,21174979..21175059, 21175541..21175673,21175756..21175877,21176104..21176297, 21176446..21176575,21176857..21176877) /locus_tag="TCM_014256" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30138.m003978" /codon_start=1 /product="Histone deacetylase 5 isoform 3" /protein_id="EOY22064.1" /db_xref="TAIR:AT5G61060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RX28" /translation="MEVESAASNSNAKNQRRVGLIYDQRMCKHRTPDDDYHPENPNRI TVIWNRLKLAGIPERCVLLNAKEAEDKYICAVHSKKHVNLIRKISSKRYDSKRNLIAS KLNSIYFNEGSSEAAYLAAGSVIEVAEKVAKGELDSAFALVRPPGHHAEFDEAMGFCL FNNVAIAATFLLDERPELDINKILIVDWDVHHGNGTQKTFWKDPRVLFFSVHRHEFGS FYPANDDGFYTMVGEGPGAGYNINVPWENGQCGDADYLAVWDHILLPVAKEFKPDVII ISAGFDAAVGDPLGGCRVTPYGYSVMLKELMDFAQGRIVLALEGGYNLDSIANSALAC MEVLLEDKPISGFSEAYPFESTWRVIQAVRRKLSAFWPTLAHELPTKLTNQKAPPHIL PLSSESDDEDDEASKIVSADFVAAVEDVVEPLLKLKVEDNHDKVTTASTLWRSELSKS DIWYATFGSNMWKSRFLCYIEGGQVEGMKKSCSGSMDRNPPKDILWKTCPHRLFFGRD FTQTWGPGGVAFLHPQSNSHNKTYMCLYRITLEQFNDVLLQENGPDHDLSSPLFDLNA LNSIPNEGSFSVEAVKVSPLND" CDS join(21172663..21172838,21173107..21173308, 21173389..21173535,21173664..21173776,21174059..21174270, 21174373..21174437,21174651..21174821,21174979..21175059, 21175541..21175673,21175756..21175877,21176104..21176297, 21176446..21176575,21176676..21176846) /locus_tag="TCM_014256" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m003978" /codon_start=1 /product="Histone deacetylase 5 isoform 2" /protein_id="EOY22063.1" /db_xref="TAIR:AT5G61060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RX28" /translation="MEVESAASNSNAKNQRRVGLIYDQRMCKHRTPDDDYHPENPNRI TVIWNRLKLAGIPERCVLLNAKEAEDKYICAVHSKKHVNLIRKISSKRYDSKRNLIAS KLNSIYFNEGSSEAAYLAAGSVIEVAEKVAKGELDSAFALVRPPGHHAEFDEAMGFCL FNNVAIAATFLLDERPELDINKILIVDWDVHHGNGTQKTFWKDPRVLFFSVHRHEFGS FYPANDDGFYTMVGEGPGAGYNINVPWENGQCGDADYLAVWDHILLPVAKEFKPDVII ISAGFDAAVGDPLGGCRVTPYGYSVMLKELMDFAQGRIVLALEGGYNLDSIANSALAC MEVLLEDKPISGFSEAYPFESTWRVIQAVRRKLSAFWPTLAHELPTKLTNQKAPPHIL PLSSESDDEDDEASKIVSADFVAAVEDVVEPLLKLKVEDNHDKVTTASTLWRSELSKS DIWYATFGSNMWKSRFLCYIEGGQVEGMKKSCSGSMDRNPPKDILWKTCPHRLFFGRD FTQTWGPGGVAFLHPQSNSHNKTYMCLYRITLEQFNDVLLQENGPDHDLSSPLFDLNA LNSIPNEGSFSVEAVKRGWYHSVVYLGKENDIPILTMTYALMHSWQLNFFFIQNRIGH LHNLHLVSLPYLCI" gene complement(21177212..21180738) /locus_tag="TCM_014257" /note="dbxref CacaoGD:Thecc1EG014257" mRNA complement(join(21177212..21177886,21178004..21178062, 21178988..21180738)) /locus_tag="TCM_014257" /product="DNAJ heat shock N-terminal domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042460" /inference="similar to AA sequence:Phytozome:POPTR_0009s02350.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04759t00001" CDS complement(join(21177829..21177886,21178004..21178062, 21178988..21180613)) /locus_tag="TCM_014257" /codon_start=1 /product="DNAJ heat shock N-terminal domain-containing protein, putative" /protein_id="EOY22065.1" /db_xref="Phytozome:POPTR_0009s02350.1" /db_xref="TAIR:AT1G74250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C911" /translation="MASEKRCLYEVLGLSRDCTQDEIRSAYKKLALQRHPDKLVQSGL SQADATAQFQELVHAYEVLSDPKERSWYDSHRSQILFADRNSTANSPIPDLFSFFSNT VFSGYSDSGRGFYKVYSDLFSKIYANELNFAKKLGLGLELVKEAPLMGNLESSYGQVT AFYNYWLGFSTVMDFVWVDEYDVMAGPNRKSRRVMEEENKKLRRKAKREYNETVRGLA EFVKKRDKRVIDMSMKRKEEMERRKEEERERKRKMEKERLERVRAYAEPEWAKVEEEE EDDWEEMEEKAVEKEELYCVACGKKFKSEKQWKNHEQSKKHKEKVAELRESFVDEEEE EEELELEEDVDERFREGLRIDEEVKDEGEKRVGELSEDDGFFDVEEGGEEEVEIDSNN DDGEEIIVLEAMVSGHKHKKDAPLKSEDVVSQTGFHVKDESDEEEFMEYDNRKNRRRN RRGKKERSKKNGSEGMKSDGNRTESKNEEASLSDTLHAEEKQPAEDEDSDGEKDDKLG NNDKISKRPVDRKWNMKKETNAKSNNSSEGKKAKATTKHSGNVCETCGEDFQSKNKLH KHLGDTGHATLKFR" gene complement(21185590..21187500) /locus_tag="TCM_014258" /note="dbxref CacaoGD:Thecc1EG014258" mRNA complement(join(21185590..21186967,21187387..21187500)) /locus_tag="TCM_014258" /product="DNAJ heat shock N-terminal domain-containing-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014257t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400042459" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS complement(join(21186439..21186967,21187387..21187421)) /locus_tag="TCM_014258" /note="paralog of Thecc1EG014257t1" /codon_start=1 /product="DNAJ heat shock N-terminal domain-containing-like protein" /protein_id="EOY22066.1" /db_xref="Phytozome:PGSC0003DMP400042459" /db_xref="TAIR:AT1G74250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F5AK49" /translation="MWLFPPRNPYIKPTPPPNYEVLSDRKERSWYDSHRSQREYNVAV RGLAKFVKKRDKRVIDMSMKRKEEMERRKEEERERKRKMEKERLERVRAYAEPEWAKV EEQERDDWDEKEEKAVEKEELYCVACGEKFKSEKQWENHEQSKKHREKQVRSKKNGSK GTKSDVTKTKNGSEGTKSDVTKTKNEE" gene complement(21188401..21193655) /locus_tag="TCM_014259" /note="dbxref CacaoGD:Thecc1EG014259" mRNA complement(join(21188401..21189054,21189405..21189477, 21189587..21189701,21190888..21190933,21191392..21191602, 21192114..21192263,21192476..21192533,21192625..21192740, 21193259..21193655)) /locus_tag="TCM_014259" /product="Mitochondrial substrate carrier family protein E" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g32470.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007869001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4401t2" CDS complement(join(21188820..21189054,21189405..21189477, 21189587..21189701,21190888..21190933,21191392..21191602, 21192114..21192263,21192476..21192533,21192625..21192740, 21193259..21193409)) /locus_tag="TCM_014259" /codon_start=1 /product="Mitochondrial substrate carrier family protein E" /protein_id="EOY22067.1" /db_xref="Phytozome:GSVIVT01007869001" /db_xref="TAIR:AT1G74240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYH1" /translation="MPAKRKEKETELCNFNFNLQMTNNRSTSSNLEAPLSHITHKATH DQNHFFVWREFLWGAIAGAFGEGMMHPIDTIKTRIQSQALLSGSLSQKSIVQMVRTVW VADGLRGFYRGIAPGITGSLATGATYFGFIESTKKWIEESHPSLEGHWAHFIAGAVGD TLGSFVYVPCEVMKQRMQVQGSRTSWNSAIMKDSMQMKSGAQMYGYYTGMFQAGRSIW KKQGLKGLYAGYWSTLARDVPFAGLMVMFYEALKDLTERGRHNLAPNLYVDSSIEGLV LGGLAGGFSAYLTTPLDVIKTRLQVQGSSASYNGWLDAMGKIWKTEGVKGMFRGSIPR ITWYIPASALTFMAVEFLRDHFNEKLNNGNLQDVTSLSIEKPESSFRKVA" mobile_element complement(21189751..21190185) /note="source:INTACT1_F64_scaffold_3-int 1194 1599" /mobile_element_type="retrotransposon:LTR/Copia" gene 21194850..21200093 /locus_tag="TCM_014260" /note="dbxref CacaoGD:Thecc1EG014260" mRNA join(21194850..21195081,21195740..21195783, 21195897..21196049,21196941..21197054,21197158..21197285, 21198474..21198596,21198710..21198829,21199418..21199539, 21199728..21200093) /locus_tag="TCM_014260" /product="Gamma subunit of Mt ATP synthase" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042647" /inference="similar to AA sequence:Phytozome:GSVIVT01007868001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8648t1" CDS join(21194978..21195081,21195740..21195783, 21195897..21196049,21196941..21197054,21197158..21197285, 21198474..21198596,21198710..21198829,21199418..21199539, 21199728..21199797) /locus_tag="TCM_014260" /codon_start=1 /product="Gamma subunit of Mt ATP synthase" /protein_id="EOY22068.1" /db_xref="Phytozome:GSVIVT01007868001" /db_xref="TAIR:AT2G33040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q96250" /translation="MAMAALRREGRRFAPLISPRPITAFRSSPLAPTREDEGPIGVRY ISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQTKAENSRGLWQPFTALLGDTPSV DVKKNVIVTVSSDKGLCGGINSTSVKISKALHKLNSGPENETKYVILGEKAKAQLVRD SKKYIELIITELQKNPLSYTQVSVLADDILKNVEFDALRIVFNKFHSVVSFLPTVSTV LSPEIVEREAEAGGKLGDLDSYEIEGGETKGEILQNLTEFQFSCVMFNAVLENACSEQ GARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALEG" gene 21200910..21201692 /locus_tag="TCM_014261" /note="dbxref CacaoGD:Thecc1EG014261" mRNA 21200910..21201692 /locus_tag="TCM_014261" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage" CDS 21201109..21201492 /locus_tag="TCM_014261" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22069.1" /translation="MLIKESCYCNFHNEINLLCWNQNVCLPAHCRYPNPSSWLQSLQA LPSQYNQLSQSPPRPPWRTLAPSHPHPFVRPLPLQTLPSLEPRTCMHCHQTLSSTASS QHTTRFLPGKQRSSGWRRSCNAQGW" mobile_element 21203478..21203509 /note="source:CACAO_M_E22186_F143_scaffold_3 9948 9985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21203510..21203565) /note="source:scaffold_6_CACTA_0712 1385 1440" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21203515..21203556) /note="source:CACAO_on_S_E58_scaffold_2 11615 11656" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(21203557..21203595) /note="source:CACAO_M_S_E122136_F76_scaffold_10 13620 13697" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21204210..21209410 /locus_tag="TCM_014262" /note="dbxref CacaoGD:Thecc1EG014262" mRNA join(21204210..21205038,21205330..21205486, 21205582..21205630,21205770..21205883,21206068..21206448, 21206553..21206939,21207334..21207429,21207546..21207661, 21207867..21207969,21208063..21208245,21208339..21208470, 21208615..21208743,21208887..21208965,21209101..21209410) /locus_tag="TCM_014262" /product="Respiratory burst oxidase, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene26084" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016350t1" /inference="similar to AA sequence:frave:gene26084" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5654t2" CDS join(21204714..21205038,21205330..21205486, 21205582..21205630,21205770..21205883,21206068..21206448, 21206553..21206939,21207334..21207429,21207546..21207661, 21207867..21207969,21208063..21208245,21208339..21208470, 21208615..21208743,21208887..21208965,21209101..21209210) /locus_tag="TCM_014262" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene26084; paralog of Thecc1EG016350t1" /codon_start=1 /product="Respiratory burst oxidase, putative isoform 1" /protein_id="EOY22070.1" /db_xref="TAIR:AT1G64060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZS5" /translation="MEIRKGSQSAQKHPANLALSPSSSSSSCSSFSASVVPLTCSPVE QTALPYRMGSRGISIVSLSDCERLRFVDTAGNEWRIVENRFNRLAITGNGHEPVVKWS DFGSCIGMRESPEFANELLRAMRGRRDWKKDITKNELHSYWCRMTDPWLDSRIELFFD LCDRNMDGRINERDIKKVILLSAPINKLSVKHEEAEEQASLIMEVLDIEHRGYIEPSQ LESLFKVSLPKGSSATSYQKDQKLEPTSKAEILFRSYWRRTWIILFWLIVCFALFTWK FIQYSHRTAFQVMGYCLSTAKGAAETLKFNMALILLPVCRNTITWLRKNSGFNSVIPF NDNINFHKLIAGGIVIGVLLHGGTHLACDFPRISGSDSSTFRQTIAARFGYQQPSYFQ ILATTEVATGIAMVIVMMIAFSLATKWPRRQTSPLPRSVRKVTGYNTFWYSHHLFILV YALLIVHSMFLFLTDNLTEKTTWMYIAIPVLLYAGERIIRAIRSGFCEVEIWKVNLYP GKVLSLKLRKPEGFSHKSGMYIFIQCPQISPFEWHPFSLTCGPKDDYLSVHIRTLGDW SYQLYSLFQEAQVTRLKQYPKIYIDGPYGAASQDHIKYDIVVMVGLGIGVTPFISILK DFASRVKKPNINHAASGEGRIEKGPLKAYLYWVTREQSSFNWFMDVMQEIAETNQKQS VVEVFNFLTSVYQEGDARSALISIIQSLYHAKNGMDIVSRTPVHTHFARPNWFNIFSN LARRHRGARIGVFYCGPLALARELERLCTKFSTKTTTRFVFHKENY" mRNA join(<21206172..21206448,21206553..21206939, 21207334..21207429,21207546..21207661,21207867..21207975, 21208063..21208245,21208339..21208470,21208615..21208743, 21208887..21208965,21209101..>21209204) /locus_tag="TCM_014262" /product="Respiratory burst oxidase, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene26084" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016350t1" /inference="similar to AA sequence:frave:gene26084" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5654t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5654t2" CDS join(<21206173..21206448,21206553..21206939, 21207334..21207429,21207546..21207661,21207867..21207975, 21208063..21208245,21208339..21208470,21208615..21208743, 21208887..21208965,21209101..>21209204) /locus_tag="TCM_014262" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene26084; paralog of Thecc1EG016350t1" /codon_start=1 /product="Respiratory burst oxidase, putative isoform 2" /protein_id="EOY22071.1" /db_xref="TAIR:AT5G47910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZS5" /translation="LFRSYWRRTWIILFWLIVCFALFTWKFIQYSHRTAFQVMGYCLS TAKGAAETLKFNMALILLPVCRNTITWLRKNSGFNSVIPFNDNINFHKLIAGGIVIGV LLHGGTHLACDFPRISGSDSSTFRQTIAARFGYQQPSYFQILATTEVATGIAMVIVMM IAFSLATKWPRRQTSPLPRSVRKVTGYNTFWYSHHLFILVYALLIVHSMFLFLTDNLT EKTTWMYIAIPVLLYAGERIIRAIRSGFCEVEIWKVNLYPGKVLSLKLRKPEGFSHKS GMYIFIQCPQISPFEWHPFSLTCGPKDDYLSVHIRTLGDWSYQLYSLFQEVNAQVTRL KQYPKIYIDGPYGAASQDHIKYDIVVMVGLGIGVTPFISILKDFASRVKKPNINHAAS GEGRIEKGPLKAYLYWVTREQSSFNWFMDVMQEIAETNQKQSVVEVFNFLTSVYQEGD ARSALISIIQSLYHAKNGMDIVSRTPVHTHFARPNWFNIFSNLARRHRGARIGVFYCG PLALARELERLCTKFSTKTTTRFVFHKEN" gene 21210830..21215083 /locus_tag="TCM_014263" /note="dbxref CacaoGD:Thecc1EG014263" mRNA join(21210830..21211074,21211478..21211709, 21211928..21212060,21212145..21212252,21213133..21213226, 21213822..21213971,21214046..21214099,21214576..21215083) /locus_tag="TCM_014263" /product="3-phosphoserine phosphatase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007867001" /inference="similar to AA sequence:Phytozome:POPTR_0012s06760.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8581t2" mRNA join(21210977..21211032,21211478..21211709, 21211928..21212060,21212145..21212252,21213133..21213226, 21213822..21213972,21214046..21214099,21214576..21214996) /locus_tag="TCM_014263" /product="3-phosphoserine phosphatase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007867001" /inference="similar to AA sequence:Phytozome:POPTR_0012s06760.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4371t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8581t2" CDS join(21211487..21211709,21211928..21212060, 21212145..21212252,21213133..21213226,21213822..21213971, 21214046..21214099,21214576..21214701) /locus_tag="TCM_014263" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="3-phosphoserine phosphatase isoform 1" /protein_id="EOY22072.1" /db_xref="Phytozome:POPTR_0012s06760.1" /db_xref="TAIR:AT1G18640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O82796" /translation="MEGLATSRIISIQASRRQHYSAFLPTFSLQLRKISNRGQVWMMK RPKSFQSIAASVQPLEASTTGHFDNKQPSKEVLELWRSADAVCFDVDSTVCIDEGIDE LAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLAQVQDFLEKRPPRISPGM EELVKKLKATNTNVYLISGGFCQMINPVASILGIPQENIFANNLLFGSSGEFLGFDAN EPTSRSGGKAAAVQQIRKAQGYKVLVMIGDGATDLEARKPGGADLFICYAGVQLREAV AAKANWLIFNFRDLINALE" CDS join(21211487..21211709,21211928..21212060, 21212145..21212252,21213133..21213226,21213822..21213972, 21214046..21214059) /locus_tag="TCM_014263" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="3-phosphoserine phosphatase isoform 2" /protein_id="EOY22073.1" /db_xref="Phytozome:POPTR_0012s06760.1" /db_xref="TAIR:AT1G18640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O82796" /translation="MEGLATSRIISIQASRRQHYSAFLPTFSLQLRKISNRGQVWMMK RPKSFQSIAASVQPLEASTTGHFDNKQPSKEVLELWRSADAVCFDVDSTVCIDEGIDE LAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLAQVQDFLEKRPPRISPGM EELVKKLKATNTNVYLISGGFCQMINPVASILGIPQENIFANNLLFGSSGEFLGFDAN EPTSRSGGKAAAVQQIRKGSGI" gene 21216436..21223204 /locus_tag="TCM_014264" /note="dbxref CacaoGD:Thecc1EG014264" mRNA join(21216436..21216711,21217655..21219140, 21220267..21220697,21222359..21223204) /locus_tag="TCM_014264" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06830.1" /inference="similar to AA sequence:ricco:30138.m003974" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01673t00002" CDS join(21218240..21219140,21220267..21220697, 21222359..21223153) /locus_tag="TCM_014264" /note="dbxref ricco:30138.m003974" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22074.1" /db_xref="TAIR:AT5G61040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HFU5" /translation="MDSWLVAAAAAAGYFAKYWKNLSKDRNGFPEFSSGNSRIGKADA GKGPFCKLSPRRKLQEDVSPDAREVSDRKVSDIYHLNVTSAAEVDSMIGFYGEKVGSL GNHTDHNVISLSSLAPGFLTNENLREDKCGKESGADSGGNSAKPSITRMDSFSDSMRK RSSLKTKISYGRLLKPLTSLDSCLMAQLYMQHVKMEEYVLSSLPSPSTPTLRPLLITD GSRIISRASHDFSSGSNVTGDNKLHNEATFKKSGYVLGIPPLPKIESLDLPKKLKFKR GSGRNGRLSIPCKIDTEKQFHSQQGSHHGAILFCLGISIGLISSYMGNRREVDKLKGL LKQTENLVQDLQEELEMKDSLTVKELANENYESQETYDNSFHDRATNSCSLEQNIDNS TRYDGKELYYEKVKESSESMSKIEAELEAELERLGLNMNVSNMERRLSDLVELDPDFV ADFAEGELRSDKVKDQAPVQSVPNEDRSGTSTTHSGNYAVSPRELSLRLHEVIQSRLE ERVQELETALQNSQRKVKLMESEPKNSWKISGSEWKNSSTPESLTNKEFDCVSKPLVM NLSGEALDAYNEACEELLKVDESEEEEDAPSDHYQNNYHEELDMFDGNMSWDGQNTRN GSLPNPTHHAMNISEEPFTGQGRILEEQSSRVQELLDIGVSEDESSDYDDEMEKQLIQ QIVEKTKKGSPVLLNAQRILFSMYEI" gene complement(21223208..21227187) /locus_tag="TCM_014265" /note="dbxref CacaoGD:Thecc1EG014265" mRNA complement(join(21223208..21224437,21225404..21225510, 21225865..21225933,21226021..21226174,21226959..21227187)) /locus_tag="TCM_014265" /product="Glycine-rich RNA-binding protein 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007865001" /inference="similar to AA sequence:Phytozome:POPTR_0012s05870.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8601t2" CDS complement(join(21223826..21224437,21225404..21225510, 21225865..21225933,21226021..21226174,21226959..21227168)) /locus_tag="TCM_014265" /codon_start=1 /product="Glycine-rich RNA-binding protein 3" /protein_id="EOY22075.1" /db_xref="Phytozome:POPTR_0012s05870.1" /db_xref="TAIR:AT5G61030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2V614" /translation="MKKCDIFQLLPTPETQPNYKVPRHTQFQHKYLVSGLRTVYINPP EGFTLGKKAAKKYKAESHSLTAINSRVVTMAFLSKIGNILRQTTNTQINAQLSASRPG LFQVFRCMSTSPSSKLFVGGISYSTDDQSLKEAFGKYGEVIEARVIVDRETGRSRGFG FVTYTSTEDASSALQALDGQVLHGRQVRVNYAAERPPRNFGGGGYNSGYGAPGGGFNS GYGGGSYGGGGYGGGGYGGGNYGGGNYGGGGGYDGNAGSSSGNYGGNVGYGSNSGGTG NYGGQGSGDNYGTGGVGYGNSFGQSGANSYDSGSFNVAGGGGGSDSFATGGSGGCEGD NMGSGGGDQLDSAEDGHTEEAARGFDQNDPLNENFRDDEDDGGDFAKRA" gene 21229179..21232808 /locus_tag="TCM_014266" /note="dbxref CacaoGD:Thecc1EG014266" mRNA 21229179..21232808 /locus_tag="TCM_014266" /product="Binding protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018763t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06910.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc945t1" CDS 21230244..21232178 /locus_tag="TCM_014266" /note="paralog of Thecc1EG018763t1" /codon_start=1 /product="Binding protein, putative" /protein_id="EOY22076.1" /db_xref="Phytozome:POPTR_0015s06910.1" /db_xref="TAIR:AT5G61010.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLN4" /translation="MDEHQSAIPTYEGDLHVVAAAHHIVKALGATKNLSHDLRKILID LDTHLSMITSNIDSKGGRGFFDVEERLKQAERKIVSWESDPVMIWDSGPRKASEYLEA VDEIQTLIDGLRGLSVNENRKQKELLHHAAGVLQMAMSRLEEELVHILVQHRQQFKPK QMSSHSNRKDVVYDESFVSVEDEPAEETSGRNCSSDDSSEYIVDLVHADAIPDIKSIA KVMFTSDYGQEFCEAFIGVQKEALEQYFATLEVGKLTIEDVLKMEWTSMSSEMNKWTW SMKIIFRVYLASEKWLCDLVLGDFGSVNPFCFLEISKSIILCLLNFGEAIAMGPHQPE KLLRLLDMYETLADLLLDIDTLFSEEVGSFVRIAFHELLERLGDSAAAAFKAFGIAIS SNRSLYPLPGGGVHPLNKYVMNYIRMFPEYCDTLNLLLKDQDAGAANPVTEPEYGQNV SLSTSCPIACHLRSITSSLESNLQKKSKLYKNEALQHIFLMNNVHYVVQKVKGSELRL FFGDEWIRKHNAKFQQYATNYERATWSSVVSLLKDDNPGSSSMSKSTFKERCKGFSVA FEEVYKSQTSWCIPDPQLREDLRISTSLKVVHAYRTFLGRNPAHIDDKCVKHTAEDVE KLLLDLFEGSPRSLRSSRRW" gene complement(21232987..21236231) /locus_tag="TCM_014267" /note="dbxref CacaoGD:Thecc1EG014267" mRNA complement(join(21232987..21233305,21234472..21236231)) /locus_tag="TCM_014267" /product="Presenilin-2" /inference="alignment:exonerate- protein:2:ricco:30138.m003972" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025793t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06920.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1002t1" CDS complement(21234702..21235964) /locus_tag="TCM_014267" /note="paralog of Thecc1EG025793t1" /codon_start=1 /product="Presenilin-2" /protein_id="EOY22077.1" /db_xref="Phytozome:POPTR_0015s06920.1" /db_xref="TAIR:AT2G29900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N053" /translation="MAQNQGPKTLLDSLGEEIIRILTPVSICMFLVVLLVSTLNSNSS TSVASIATIAYAETSSDSSWDKFVGALLNSLAFVAVVTVVTFILVLLFYLRCTKFLKI YMGFSSFVVLGFMGGEIALIFIEKFSVPIDCITFSVVLFNFAAVGVLAVFMSKMAIFV TQGYLVLIGMFVAYWFTLLPEWTTWVLLVAMALYDLAAVLLPVGPLRLLVELAMSRDE DIPALVYEARPVTHHDSGSGENTVQRRVWRERGNVRLDLVDNLNLNGNVVSDANTSVG TVQSSHNDTRIARVEEGQVSERDAELSAPLIDHRMNSQDGMSAESLVLEGMGLGSSGA IKLGLGDFIFYSVLVGRAAMYDFMAVYACYLAIVAGLGITLMLLAFYQKALPALPVSI ALGVLFYFLTRFLLEVFIVQCSLNLVMF" gene 21236318..21245241 /locus_tag="TCM_014268" /note="dbxref CacaoGD:Thecc1EG014268" mRNA join(21236318..21236357,21243520..21244337, 21244633..21245241) /locus_tag="TCM_014268" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06790.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06790.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4364t1" gene 21241280..21241693 /locus_tag="TCM_014271" /note="dbxref CacaoGD:Thecc1EG014271" mRNA 21241280..21241693 /locus_tag="TCM_014271" /product="Uncharacterized protein" /note="quality class is strong-expresste, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4365t1" CDS 21241335..21241619 /locus_tag="TCM_014271" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22079.1" /translation="MLGLFAMSATHWFCFLLKTLILASLVVCNSMPRRHCLISGHLSC QKCSTFNSWDSICRYLSLFFLLRCYGVCFPQTRQWVNTKYLRPHGAEGVI" CDS join(21243583..21244337,21244633..21244873) /locus_tag="TCM_014268" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22078.1" /db_xref="Phytozome:POPTR_0015s06790.1" /translation="MESGHDTGSDLKTHQVASPSENSHVTRAKKSRRPSHSSSSSSSG EAIRLGSTGTSTSNAGVHTPLGDEQAEEDIPVSSMPDSGQSSDGSAALIPPPLPTERP AGGSPSEASKRIPSYVFARTKSSGPMEWSVASNESLFSIHMGNMSFTRDQLSWMSKSG ELGCINDPTISGPLLDVPSNQTPPRKSTEIAKKSGTLDDGYGVTEAAAAETMREVLRE KESQPDENNAKESPRSRSMSQHSDTSVKSFAFPILTGDGGKSGSFRPNTKNKKQLSRP STPKTTPQTPPETPKPQTPPETPKPQTPKPETPKETRSAGPRRWFSCFSCCPSCS" mobile_element 21245224..21245306 /note="source:scaffold_8_CACTA_0850 11660 11739" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21245305..21253135) /note="source:CACAO_on_S_E176_scaffold_5 1134 8325" /mobile_element_type="transposon:TIR/Mutator" mobile_element 21251750..21254322 /note="source:CACAO_on_E193_scaffold_6 9317 11903" /mobile_element_type="transposon:TIR/Mutator" mobile_element 21254084..21254431 /note="source:scaffold_1_CACTA_0009 12875 13292" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21254170..21254527) /note="source:CACAO_Mutator_E1149_scaffold_5 1 354" /mobile_element_type="transposon:TIR/Mutator" mobile_element 21254943..21255768 /note="source:CACAO_M_E33977_F20_scaffold_4 15686 16551" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21257720..21261776 /locus_tag="TCM_014274" /note="dbxref CacaoGD:Thecc1EG014274" mRNA join(21257720..21258244,21258605..21258751, 21258858..21259067,21259176..21259353,21259456..21259726, 21259825..21259927,21260004..21260128,21260223..21260301, 21260381..21260522,21260846..21261006,21261101..21261221, 21261319..21261776) /locus_tag="TCM_014274" /product="Replication protein A 70 kDa DNA-binding subunit" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042640" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400042640" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8596t2" CDS join(21257949..21258244,21258605..21258751, 21258858..21259067,21259176..21259353,21259456..21259726, 21259825..21259927,21260004..21260128,21260223..21260301, 21260381..21260522,21260846..21261006,21261101..21261221, 21261319..21261519) /locus_tag="TCM_014274" /codon_start=1 /product="Replication protein A 70 kDa DNA-binding subunit" /protein_id="EOY22080.1" /db_xref="Phytozome:PGSC0003DMP400042640" /db_xref="TAIR:AT5G08020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8SE38" /translation="MIKIVAGNSLKNTKTPSKFLLFQNKTLPFLDPCLHSSFVSSPSI SQIPTTTNIEREMAKWVTRDAISTILANPSPDSASGLLEIVVQVLDLKLTGNRYTFNA SDGNMKLRAIFPSNVSSEITSGSIQNKGLVKILDYTLNDIPNKSEKYLIVKKCETVSP ALDTEIKAEVKTEESEIASKKPKLENDAKTEGAGIILKPKQEMVSKSAAQIVYEQRDN MAPSARMAMTRRVHPLVSLNPYQGNWTIKVRLTSKGNMRTYKNARGEGCVFNVELTDE DGTQIQATMFNEAARKFYEKFQLGKVYYISKGTLKVANKQFKTLQNDYEMTLNESSVV EEAVNEETFIPETKFNFIPIDQLGPYVNGRELVDIIGVVQSVTSVSNIKRKIDNENIS KRDMTVADETKRTVVVSLWNELANNAGQELFDIADKSPIVAIKSLKVSDFQGVSLSTL GKSTLLINPDMPEAKNLRSWYDSEGKGSSMASVGSGLSPSKSGARSMYTDRVSLSHIT GNPSLGEEKPAFFSIKAFISLIRPEQAMWYRACKSCNKKVTEAVGSGYWCEGCQKNDE ECSLRYIMVSKISDASGEAWVSGFNEEAERIVGCPADELDKLKSKEGEMNAYQQKLKE ATWVPHLFRVSVTQNEYNNEKRQRITVRAVAPIDFAEESRFLLEEIKKMRNSQ" gene complement(21261923..21267716) /locus_tag="TCM_014275" /note="dbxref CacaoGD:Thecc1EG014275" mRNA complement(join(21261923..21262591,21262667..21262822, 21263310..21263528,21264024..21264133,21264622..21264696, 21264944..21265127,21265923..21266101,21267232..21267716)) /locus_tag="TCM_014275" /product="PLC-like phosphodiesterases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007848001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011524t1" /inference="similar to AA sequence:ricco:30138.m003968" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08415t00001" mRNA complement(join(21262139..21262591,21262667..21262825, 21263310..21263528,21264024..21264133,21264622..21264696, 21264944..21265127,21265923..21266101,21267232..21267388)) /locus_tag="TCM_014275" /product="PLC-like phosphodiesterases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007848001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011524t1" /inference="similar to AA sequence:ricco:30138.m003968" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4440t4; inference alignment:Newbler:10:TSA:cgbaB_g08415t00001" CDS complement(join(21262340..21262591,21262667..21262822, 21263310..21263528,21264024..21264133,21264622..21264696, 21264944..21265127,21265923..21266101,21267232..21267268)) /locus_tag="TCM_014275" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003968; paralog of Thecc1EG011524t1" /codon_start=1 /product="PLC-like phosphodiesterases superfamily protein isoform 1" /protein_id="EOY22081.1" /db_xref="TAIR:AT5G08030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C907" /translation="MDCLRVNATTSKCFVPFLFLSLIAGCAARPFYPLPSKTSNENRQ PIQTSRPYNIAHRGSNGEIPEETAAAYMRAIEEGADFIETDILSSKDGVLICFHDVTL DETTDVTKHKDFANRKRTYEVQGVNTTGFFTVDFTLEELKKLRVKQRYIFRDQRYNGK FPIITFEEFISIALDAPRVVGIYPEIKNPVFINQRVKWPDGKRFEDKFVETLKKYGYR GSYMSKDWFKQPLFIQSFAPTSLVYISNLTDSPKIFLIDDVTIPTQDTNQSYWEITSD DYLDFIKEYVVGIGPWKDTVVPVKDNYLQTPTDLVARAHSHNLQVHPYTYRDENMFLH FNFHQDAYQEYDYWLTKIGVDGLFTDFTGSLHKFQEWTSPLSQNDGSDKGSASKLLDK IELLITSYKNG" CDS complement(join(21262340..21262591,21262667..21262825, 21263310..21263528,21264024..21264133,21264622..21264696, 21264944..21265127,21265923..21266101,21267232..21267268)) /locus_tag="TCM_014275" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m003968; paralog of Thecc1EG011524t1" /codon_start=1 /product="PLC-like phosphodiesterases superfamily protein isoform 2" /protein_id="EOY22082.1" /db_xref="TAIR:AT5G08030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C907" /translation="MDCLRVNATTSKCFVPFLFLSLIAGCAARPFYPLPSKTSNENRQ PIQTSRPYNIAHRGSNGEIPEETAAAYMRAIEEGADFIETDILSSKDGVLICFHDVTL DETTDVTKHKDFANRKRTYEVQGVNTTGFFTVDFTLEELKKLRVKQRYIFRDQRYNGK FPIITFEEFISIALDAPRVVGIYPEIKNPVFINQRVKWPDGKRFEDKFVETLKKYGYR GSYMSKDWFKQPLFIQSFAPTSLVYISNLTDSPKIFLIDDVTIPTQDTNQQSYWEITS DDYLDFIKEYVVGIGPWKDTVVPVKDNYLQTPTDLVARAHSHNLQVHPYTYRDENMFL HFNFHQDAYQEYDYWLTKIGVDGLFTDFTGSLHKFQEWTSPLSQNDGSDKGSASKLLD KIELLITSYKNG" mobile_element 21269550..21269978 /note="source:CACAO_M_E22931_F20_scaffold_3 1673 2097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21273472..21273564 /note="source:CACAO_M_E22931_F20_scaffold_3 2064 2174" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21276537..21293445) /locus_tag="TCM_014277" /note="dbxref CacaoGD:Thecc1EG014277" mRNA complement(join(21276537..21277585,21279647..21280281, 21280607..21280775,21285905..21286046,21286126..21286274, 21286946..21287213,21289764..21289967,21292860..21293445)) /locus_tag="TCM_014277" /product="RNA binding-like protein" /inference="alignment:exonerate- protein:2:ricco:30138.m003967" /inference="similar to AA sequence:Phytozome:POPTR_0008s09620.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07904t00001" CDS complement(join(21277164..21277585,21279647..21280281, 21280607..21280775,21285905..21286046,21286126..21286274, 21286946..21287126)) /locus_tag="TCM_014277" /codon_start=1 /product="RNA binding-like protein" /protein_id="EOY22083.1" /db_xref="Phytozome:POPTR_0008s09620.1" /db_xref="TAIR:AT3G29575.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RED1" /translation="MNNYRAWAWHDQLSKGNVLEVMDVTKKFNPKPYVQPINGFSGPE IYYDCHLLQSGRMNSQDDESIDVVEAEVEGVATYFKIPNVLTDPFDVSIDLDALFPSH IKSSNINQATQDKAIPDTKVILNTDVILAIEVVPDVTVDAGAILDVVIDNVGATPMLP IWLSKKTITLLFLLNLISSLCLSLSLQSTLPYSVAFNSLQYIAVAAFSSLTFPIRWNP RVLISSSVLQLFLMGEAKVIRDKVDQTNFSFQDKQQPRNFLQRFSPDQISRKQTQSNP NKRPPELDLNLRLSLGGIYSGNTKEKPLTRSSSMAGVVTVNKSSSEFQKSLPKSFLSL ARSCSLPAQVERSKRPVNVKELRIMRRVEAKKRVVEKQRNAKKASEKDKLVTEGPPSS PSKIPAWAAASAAKSPALNRAIDKIKEGFRKLEGLEGSGTSNGPSEYKSTSKPIKAEP AITFETTSDEKSVKLKPAETKSENPTKKAELSNGYIQDYGMNVMKKMPSVTTTGDGPN GRKIEGFLYKYMKGQVSIVCVCHGNFLSPEEFVKHAGGKDVTNPMKHINVCSTSFSF" mobile_element complement(21283835..21284614) /note="source:CACAO_M_S_E84604_F20_scaffold_6 6753 7597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21284646..21288289 /note="source:INTACT539_F11_scaffold_2-int 1654 5228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21288290..21289653) /note="source:CACAO_M_E42804_F230_scaffold_5 1520 2895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21289755..21290876 /note="source:CACAO_M_E4484_F289_scaffold_2 1345 2465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21290870..21290981 /note="source:INTACT539_F11_scaffold_2-int 6193 6304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21290977..21291300 /note="source:INTACT349_F203_scaffold_6-int 11418 11758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21290982..21291008) /note="source:scaffold_2_CACTA_0262 11371 11509" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21291288..21291349) /note="source:INTACT333_F20_scaffold_9-int 2438 2499" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21291665..21292242) /note="source:CACAO_M_E1542_F20_scaffold_1 1216 1804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21291822..21293226 /note="source:CACAO_M_E33977_F20_scaffold_4 16744 18232" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21296416..21298705) /locus_tag="TCM_014278" /note="dbxref CacaoGD:Thecc1EG014278" mRNA complement(join(21296416..21296718,21298616..21298705)) /locus_tag="TCM_014278" /product="Mitochondrial import receptor subunit TOM5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06940.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06940.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8594t1" CDS complement(join(21296641..21296718,21298616..21298702)) /locus_tag="TCM_014278" /codon_start=1 /product="Mitochondrial import receptor subunit TOM5" /protein_id="EOY22084.1" /db_xref="Phytozome:POPTR_0015s06940.1" /translation="MADPVISIDKVKAFWHSQVHDEEKWALNMKLLRAAGLFAGSIFL MRNYGDLMAI" gene 21299088..21300549 /locus_tag="TCM_014279" /note="dbxref CacaoGD:Thecc1EG014279" mRNA join(21299088..21299527,21299900..21300549) /locus_tag="TCM_014279" /product="Wiskott-Aldrich syndrome protein family member 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008106001" /inference="similar to AA sequence:ricco:30138.m003962" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc44t10" CDS join(21299360..21299527,21299900..21300328) /locus_tag="TCM_014279" /note="dbxref ricco:30138.m003962" /codon_start=1 /product="Wiskott-Aldrich syndrome protein family member 2" /protein_id="EOY22085.1" /db_xref="TAIR:AT5G08050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PGF4" /translation="MEATAVYSSKGSPFVCSSRIAKPKPQNSATSSPFRIQSMATQKP LPSVAKTVGSRKSSNSTVFPLGEPGPRNSPVAAPPVKLLTNVEKLKLLTKAEKAGLLS AAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPGTPGALLTLSLGLLLLGPSCVYLVP EDNLGEVVLQVVVALICVAGGSAAFAAWNLVSNLQKSN" gene complement(21300626..21306093) /locus_tag="TCM_014280" /note="dbxref CacaoGD:Thecc1EG014280" mRNA complement(join(21300626..21301241,21301817..21301880, 21303126..21303185,21303288..21303409,21303656..21303830, 21303925..21304151,21304239..21304536,21304966..21305151, 21305856..21306018)) /locus_tag="TCM_014280" /product="RNA binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06960.1" /inference="alignment:exonerate- protein:2:TAIR:AT5G60980.2.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018776t4" /inference="similar to AA sequence:ricco:30138.m003961" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4521t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc79t4_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc74t12_C2" mRNA complement(join(21300642..21300950,21301026..21301241, 21301817..21301880,21303126..21303188,21303288..21303409, 21303656..21303830,21303925..21304151,21304239..21304536, 21304966..21305151,21305856..21306093)) /locus_tag="TCM_014280" /product="RNA binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G60980.2.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018776t4" /inference="similar to AA sequence:ricco:30138.m003961" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc79t4_C2" CDS complement(join(21300946..21300950,21301026..21301241, 21301817..21301880,21303126..21303188,21303288..21303409, 21303656..21303830,21303925..21304151,21304239..21304536, 21304966..21305151)) /locus_tag="TCM_014280" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003961; paralog of Thecc1EG018776t4" /codon_start=1 /product="RNA binding protein, putative isoform 1" /protein_id="EOY22086.1" /db_xref="TAIR:AT5G60980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLM4" /translation="MAMQEGSPANPPSAQVVGNAFVEQYYHILHHSPNLVHRFYQDSS CLSRPDKDGNMTTVTTMQAINEKVLSLNYEDYTAEIKTADAQDSFEKGVIVLVTGCLT GKDNVRKKFTQTFFLAPQDKGYFVLNDVLRYVEEKELHNSVPVNGVSEQASTSALTPE PEPTYDPLVVDPVTHEEVEDISNGAEVCDPSDKEEGSVIEEEVFVPQNVASQNESVAT VDSVPVVIEDAPKQSYASIVKVMKSNTASTPVYVPSNNVRAAPADQQSIASAKPAPAP EAAVPNSDNAPESSNDNEEAEGHSIYVRNLPYAAMPAQLEEAFKKFGPIKRNGIQVRT NKQGFTFGFVEFEMASSVQSALEASPIIIGDRKADVEEKRTNTRVGSSGRARYSSGKG GFRSDSFRVRGNLGGGRGGYGRNEFRNQGEFSGRPKGSGGRNGDNYQRANHNGRGGRQ V" CDS complement(join(21301015..21301241,21301817..21301880, 21303126..21303185,21303288..21303409,21303656..21303830, 21303925..21304151,21304239..21304536,21304966..21305151)) /locus_tag="TCM_014280" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m003961; paralog of Thecc1EG018776t4" /codon_start=1 /product="RNA binding protein, putative isoform 2" /protein_id="EOY22087.1" /db_xref="TAIR:AT5G60980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLM4" /translation="MAMQEGSPANPPSAQVVGNAFVEQYYHILHHSPNLVHRFYQDSS CLSRPDKDGNMTTVTTMQAINEKVLSLNYEDYTAEIKTADAQDSFEKGVIVLVTGCLT GKDNVRKKFTQTFFLAPQDKGYFVLNDVLRYVEEKELHNSVPVNGVSEQASTSALTPE PEPTYDPLVVDPVTHEEVEDISNGAEVCDPSDKEEGSVIEEEVFVPQNVASQNESVAT VDSVPVVIEDAPKQSYASIVKVMKSNTASTPVYVPSNNVRAAPADQQSIASAKPAPAP EAAVPNSDNAPESSNDNEEAEGHSIYVRNLPYAAMPAQLEEAFKKFGPIKRNGIQVRT NKGFTFGFVEFEMASSVQSALEASPIIIGDRKADVEEKRTNTRVGSSGRARYSSGKGG FRSDSFRVRGNLGGGRGGYGRNEFRNQGEFSGRPKGSGGRNGDNYQRANHNGRGGRQG GG" mRNA complement(join(21301857..21301880,21302631..21302720, 21303126..21303188,21303288..21303409,21303656..21303830, 21303925..21304151,21304239..21304536,21304966..21305151, 21305856..21306024)) /locus_tag="TCM_014280" /product="RNA binding protein, putative isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT5G60980.2.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018776t4" /inference="similar to AA sequence:ricco:30138.m003961" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc78t10; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc74t12_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc79t4_C2" CDS complement(join(21302691..21302720,21303126..21303188, 21303288..21303409,21303656..21303830,21303925..21304151, 21304239..21304536,21304966..21305151)) /locus_tag="TCM_014280" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30138.m003961; paralog of Thecc1EG018776t4" /codon_start=1 /product="RNA binding protein, putative isoform 3" /protein_id="EOY22088.1" /db_xref="TAIR:AT5G60980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLM4" /translation="MAMQEGSPANPPSAQVVGNAFVEQYYHILHHSPNLVHRFYQDSS CLSRPDKDGNMTTVTTMQAINEKVLSLNYEDYTAEIKTADAQDSFEKGVIVLVTGCLT GKDNVRKKFTQTFFLAPQDKGYFVLNDVLRYVEEKELHNSVPVNGVSEQASTSALTPE PEPTYDPLVVDPVTHEEVEDISNGAEVCDPSDKEEGSVIEEEVFVPQNVASQNESVAT VDSVPVVIEDAPKQSYASIVKVMKSNTASTPVYVPSNNVRAAPADQQSIASAKPAPAP EAAVPNSDNAPESSNDNEEAEGHSIYVRNLPYAAMPAQLEEAFKKFGPIKRNGIQVRT NKQGFTFGFVEFEMASSVQSALEVIRSAGLKD" gene 21306820..21310506 /locus_tag="TCM_014282" /note="dbxref CacaoGD:Thecc1EG014282" mRNA join(21306820..21307343,21308377..21308469, 21310087..21310506) /locus_tag="TCM_014282" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.27 coverage" CDS join(21307341..21307343,21308377..21308469, 21310087..21310266) /locus_tag="TCM_014282" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22089.1" /translation="MEGYRAKKNLEREDRIQAPPDKTRVGCKAIIYIEDEKTSRTNVL TNKNGHEDVASKDHESHFLSQNITLLNPSHVTTKGCPQSLRMKGALK" gene complement(21311405..21313375) /locus_tag="TCM_014283" /note="dbxref CacaoGD:Thecc1EG014283" mRNA complement(join(21311405..21311702,21313085..21313146, 21313223..21313375)) /locus_tag="TCM_014283" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g13100t00001" CDS complement(join(21311698..21311702,21313085..21313146, 21313223..21313350)) /locus_tag="TCM_014283" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22090.1" /translation="MIPKTERHGLIGKCSYVQFNIPSLIWSLLLRSIYPNSTARLKRC IKDGRFGRLCISSNFGQNFG" mobile_element 21318055..21318090 /note="source:scaffold_6_CACTA_0702 14591 14626" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21320188..21320391 /note="source:scaffold_5_CACTA_0614 3180 3403" /mobile_element_type="transposon:TIR/CACTA" gene 21321310..21324283 /locus_tag="TCM_014284" /note="dbxref CacaoGD:Thecc1EG014284" mRNA join(21321310..21321721,21324124..21324283) /locus_tag="TCM_014284" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30138.m003960" /inference="similar to AA sequence:ricco:30138.m003960" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8595t1" CDS 21321338..21321718 /locus_tag="TCM_014284" /note="dbxref ricco:30138.m003960" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22091.1" /db_xref="TAIR:AT5G08060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H0D4" /translation="MAPKASSSLFQSLKRYVKKPWEITGPCADPEYKNALPKATEYRV RCPATTLQKPIVPTSNPETVFDIKYYSRDQRRNRPPIRRTILKKADVEKMLKEKTFDV NDFPRVYLTAKVEEDENAIGGGYQ" gene complement(21324723..21325373) /locus_tag="TCM_014286" /note="dbxref CacaoGD:Thecc1EG014286" mRNA complement(21324723..21325373) /locus_tag="TCM_014286" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS complement(21324988..21325215) /locus_tag="TCM_014286" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22092.1" /translation="MARILFTNWIHQPLGRPIALRLRRERTKKGQKPMKISSTPHETE ENIQTQHSPVDREMIPFNCNAMVKDQFNHVT" mobile_element 21325285..21326546 /note="source:CACAO_M_S_E119572_F76_scaffold_9 1 1272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21326539..21329027) /note="source:CACAO_M_E4368_F316_scaffold_2 1 2558" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21331005..21331088) /note="source:scaffold_10_CACTA_0137 6929 7013" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21331474..21332209 /note="source:INTACT146_F154_scaffold_7-int 5923 6664" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(21332343..21333235) /locus_tag="TCM_014287" /note="dbxref CacaoGD:Thecc1EG014287" mRNA complement(21332343..21333235) /locus_tag="TCM_014287" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(21332859..21333128) /locus_tag="TCM_014287" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22093.1" /translation="MMQLLLSYSQRKRPRQTLEEEEKRKAKSMEKCVLPASIIQKVRS STESKLHLQLSVRNANPHVHARKHSLCSRRYGRRPTRVTLSACNP" gene 21337597..21339822 /locus_tag="TCM_014288" /note="dbxref CacaoGD:Thecc1EG014288" mRNA join(21337597..21337717,21338294..21339822) /locus_tag="TCM_014288" /product="Teosinte branched 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008109001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018809t2" /inference="similar to AA sequence:ricco:30138.m003959" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4414t1" CDS 21338325..21339434 /locus_tag="TCM_014288" /note="dbxref ricco:30138.m003959; paralog of Thecc1EG018809t2" /codon_start=1 /product="Teosinte branched 1, putative" /protein_id="EOY22094.1" /db_xref="TAIR:AT5G60970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N048" /translation="MISSPREKDFQAKQEGETNDGKFSKGSSSSRQWSGFRNPRIVRV SRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQERLGLSQPSKVIDWLLDATK TDIDKLPPLQMPPGFGQFHQQMLVPHESNSSQSSLAPFFEANSMFMKDGEDPSIAAKR YWDMDAALRAKSKEVERESTTAAEKGKWIKVTEQHENQDGIGDYSGQASSQKHFPVAN HSSLPGLSNTAMPFNSYYHWEPSSLSLSQFGNHGFLSQTENFLHGNTTVPLPSSLALP SAHAPQLFFCPPSTMPSLFPSYPPYVTTTPGDSSDSRQINHFQLLSSSSQHILPNSVT MSPSMKPFSLNVNAGLRTHTQNDDESHADEDNIDS" mobile_element 21343929..21345514 /note="source:INTACT58_F125_scaffold_5-int 14733 16330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21345318..21345541) /note="source:CACAO_M_S_E38315_F276_scaffold_4 20888 21113" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21346092..21346308 /note="source:CACAO_M_E12044_F76_scaffold_2 20763 20895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21346328..21346718 /note="source:INTACT458_F219_scaffold_7-int 2679 3121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21346849..21347688 /note="source:CACAO_MITE_S123_scaffold_5 29 863" /mobile_element_type="transposon:TIR/MITE" mobile_element 21349814..21350642 /note="source:CACAO_M_E5300_F9_scaffold_2 13 826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21350684..21351257 /note="source:scaffold_10_CACTA_0137 6207 6780" /mobile_element_type="transposon:TIR/CACTA" gene complement(21353795..21355431) /locus_tag="TCM_014290" /note="dbxref CacaoGD:Thecc1EG014290" mRNA complement(join(21353795..21354435,21354601..21354708, 21354946..21355186,21355398..21355431)) /locus_tag="TCM_014290" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038827t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(21354235..21354435,21354601..21354708, 21354946..21355098)) /locus_tag="TCM_014290" /note="paralog of Thecc1EG038827t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22095.1" /translation="MEVRFIRDKICKDHLKDLLGDECEKAKREGGDLNIDLVLTKGKL QPEIIAEEEEKQHQVTFSELFECIYKLQKGTREFVDNRTKNICAWTEAIEEHTDTRTH IYGFGIRVPASRLIITSVTFEFVCGLTVTPHPLNPMFELEGYRDWLPMSRT" mobile_element complement(21355127..21355714) /note="source:CACAO_M_S_E5783_F215_scaffold_2 915 1474" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21355829..21356362 /note="source:CACAO_M_S_E19828_F19_scaffold_3 14024 14569" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21357134..21368553) /locus_tag="TCM_014292" /note="dbxref CacaoGD:Thecc1EG014292" mRNA complement(join(21357134..21358667,21360396..21362480, 21362819..21362889,21363552..21364984)) /locus_tag="TCM_014292" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06990.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06990.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc371t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4450t3" mRNA complement(join(21357299..21358672,21360169..21360319, 21360396..21362480,21362819..21362889,21363552..21364278, 21364335..21364595,21367007..21367258,21367974..21368553)) /locus_tag="TCM_014292" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06990.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06990.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4450t3" CDS complement(join(21357837..21358667,21360396..21362480, 21362819..21362889,21363552..21363696)) /locus_tag="TCM_014292" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY22097.1" /db_xref="Phytozome:POPTR_0015s06990.1" /db_xref="TAIR:AT1G74160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N047" /translation="MAAKLLHSLADENPDLQKQIGCMTGIFQIFDRHHMLTTKRLSHR RLPAGISFLNNGILEEDSNNAYHRQAATEMNINRSGNEKQRISTESSRASFSSSCSSS LSSLDCNKTAQQDASSFDRILIPETPSRDPAMNQLSTSPHLGSACLDLRDVVKDSMYR EARGLSVRTTTREEVSGSTVKHKGSPRPFPLPTSVDGSYGAGINGKQNVPADLKESLR VLAQLREAPWYYNNEARELQSSSHEANGSWNSISRDAPRFSYDGREINRLSFESRETF KSTPKLKELPRLSLDSRERLMRGSNYLTKSFHNRGNLNSRVTDPPQSLGGQKRPPNVV AKLMGLEPLPDSSSAGDRQLGVIKTCSVEDNNPFSRSLRANDLNRRTRTSNSSRNSLK EPTSPRWKNPDMVMKPISSSRFPIEPAPWRHVDGSRGSQKQPLKQFKVPAKTPNSFPS VYREIEKRLKDLEFQQSGKDLRALKQILEAMQAKGLLESRKEEQAANLVTQRDHEPKC TSPGQNLRGQRSPQNTRINTSTTRGSDSIRPYESPIVIMKPAKPVEKVDIPASTVIPI DDFSRLPKIHGGGSVDNKTGSINSRTVGDHTARNSRRDFAASSSDKRASSRSIKSIQS SIKPSKESTATLVKNSGSVSPRLQQKKLELDRRSRPPTPPSDPSKPRRQHSRHSSESG SPAGKHRPKSHNILQSDDQLSQVSNESRTSSHQGDDTSLQSDCNIILESKLDVEVTSN ERSIEINGSQSPSMKAAKYSISGIMQKGAQGFNDNHNEEQWNPADNCLSNNVGSGLTS EISRKKLQNIEHLVQKLRRLNSNHDEASTDYIASLCENTNPDHRYISEILLASGLLLR DLSSGLTTFQLHPSGHPINPELFFVLEQTKASSILSKEESNSGKVPHSKPDHEKFHRK LIFDSVNEILVGKLALVGASPEPWVKSGKLAKKTLSAQKLLKELCLEIEQLQAKKSKC NLEEEEDGLKSILWEDVLCRSESWTDFHCEISGMVLDVERLVFKDLVDEIVIGERVGL RAKQSRRRQLFSK" CDS complement(join(21357837..21358672,21360169..21360319, 21360396..21362480,21362819..21362889,21363552..21363696)) /locus_tag="TCM_014292" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22096.1" /db_xref="Phytozome:POPTR_0015s06990.1" /db_xref="TAIR:AT1G74160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N047" /translation="MAAKLLHSLADENPDLQKQIGCMTGIFQIFDRHHMLTTKRLSHR RLPAGISFLNNGILEEDSNNAYHRQAATEMNINRSGNEKQRISTESSRASFSSSCSSS LSSLDCNKTAQQDASSFDRILIPETPSRDPAMNQLSTSPHLGSACLDLRDVVKDSMYR EARGLSVRTTTREEVSGSTVKHKGSPRPFPLPTSVDGSYGAGINGKQNVPADLKESLR VLAQLREAPWYYNNEARELQSSSHEANGSWNSISRDAPRFSYDGREINRLSFESRETF KSTPKLKELPRLSLDSRERLMRGSNYLTKSFHNRGNLNSRVTDPPQSLGGQKRPPNVV AKLMGLEPLPDSSSAGDRQLGVIKTCSVEDNNPFSRSLRANDLNRRTRTSNSSRNSLK EPTSPRWKNPDMVMKPISSSRFPIEPAPWRHVDGSRGSQKQPLKQFKVPAKTPNSFPS VYREIEKRLKDLEFQQSGKDLRALKQILEAMQAKGLLESRKEEQAANLVTQRDHEPKC TSPGQNLRGQRSPQNTRINTSTTRGSDSIRPYESPIVIMKPAKPVEKVDIPASTVIPI DDFSRLPKIHGGGSVDNKTGSINSRTVGDHTARNSRRDFAASSSDKRASSRSIKSIQS SIKPSKESTATLVKNSGSVSPRLQQKKLELDRRSRPPTPPSDPSKPRRQHSRHSSESG SPAGKHRPKSHNILQSDDQLSQVSNESRTSSHQGDDTSLQSDCNIILESKLDVEVTSN ERSIEINGSQSPSMKAAKYSISGIMQKKSIARLVEDGSVAELAMVALEHPSPVSVLDT SVYTDDAPSPVKQILNTPGGNGAQGFNDNHNEEQWNPADNCLSNNVGSGLTSEISRKK LQNIEHLVQKLRRLNSNHDEASTDYIASLCENTNPDHRYISEILLASGLLLRDLSSGL TTFQLHPSGHPINPELFFVLEQTKASSILSKEESNSGKVPHSKPDHEKFHRKLIFDSV NEILVGKLALVGASPEPWVKSGKLAKKTLSAQKLLKELCLEIEQLQAKKSKCNLEEEE DGLKSILWEDVLCRSESWTDFHCEISGMVLDVERLVFKDLVDEIVIGERVGLRAKQSR RRQLFSK" mobile_element complement(21359517..21360006) /note="source:CACAO_M_E86045_F74_scaffold_12 2663 3141" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21367462..21369023 /note="source:INTACT700_F304_scaffold_7-int 14953 16497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21368822..21369417) /note="source:INTACT556_F252_scaffold_2-int 1412 2017" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21369436..21369874) /note="source:INTACT556_F252_scaffold_2-int 925 1303" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21369871..21371510 /locus_tag="TCM_014293" /note="dbxref CacaoGD:Thecc1EG014293" mRNA join(21369871..21370323,21370412..21371510) /locus_tag="TCM_014293" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.13 coverage" CDS join(21370100..21370323,21370412..21370562) /locus_tag="TCM_014293" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22098.1" /translation="MLSLCPLSAGTETLSHLKLSFAADWALPLYQAADSSLSLSSLPS APIKPTQRPKFLSLIYSLAGDTHSHYTHIFGLSLPNATVPPPLYTRFLGSGGGTLHYL VPGHWGARSTTLPDANFSRLAR" mobile_element 21370319..21370348 /note="source:CACAO_on_E205_scaffold_7 4792 4908" /mobile_element_type="transposon:TIR/Mutator" mobile_element 21370349..21370651 /note="source:scaffold_5_CACTA_0614 6102 6405" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21370652..21370719 /note="source:CACAO_on_E205_scaffold_7 4909 5187" /mobile_element_type="transposon:TIR/Mutator" gene complement(21374620..21381466) /locus_tag="TCM_014294" /note="dbxref CacaoGD:Thecc1EG014294" mRNA complement(join(21374620..21375231,21376003..21376063, 21376193..21376378,21378274..21378340,21378491..21378572, 21378672..21380876,21381081..21381300)) /locus_tag="TCM_014294" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008112001" /inference="similar to AA sequence:ricco:30138.m003957" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4540t3; alternateUTRof:Thecc1EG014294t1; weak similarity to Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; inference alignment:Newbler:10:TSA:cgbaP2_g01145t00002" mRNA complement(join(21374649..21375231,21376003..21376063, 21376193..21376378,21378274..21378340,21378491..21378572, 21378672..21380882,21381081..21381368)) /locus_tag="TCM_014294" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008112001" /inference="similar to AA sequence:ricco:30138.m003957" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; weak similarity to Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; inference alignment:Newbler:10:TSA:cgbaP2_g01145t00002" CDS complement(join(21375077..21375231,21376003..21376063, 21376193..21376378,21378274..21378340,21378491..21378572, 21378672..21380847)) /locus_tag="TCM_014294" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003957; weak similarity to Haloacid dehalogenase-like hydrolase (HAD) superfamily protein" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22099.1" /db_xref="TAIR:AT4G26190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H496" /translation="MESSSVPESSPSNVKLSRSEKKKMKKQRKHRAIQNGSAESKEEE TSLGTDSNLESKADVSLDSGLQQGENCSSKDAHLEIEHLTPMRRKKKRKENSLIDDSK VNIGVESGLKEEVNSSVKDTLVEKDSHSGTLESIGFKSGLKESQLNEQPAHSERKRKR KKDRKMAIRGQYGEEGPKSVLLFRDGNENAIIDENQSHSHAESKVTVSLESVEKSSLE PALKGSQVNKQPAASEKKSKRKREHKMAKAGQFEKLDQKSAVELRNGKENALIDEIQS DSWVESKLNVSLESGLKEGANSLMEDSLWERDSHVETLNKISLGSVLKGSQLNEQLAD PGRKRKRKRERKVAKPEQFEKLDAKCVLELRDRKENSLIDEKQNDSHVESKMNVSSES GLKEEANRDVDTLKNISLESGLKGTQSNEQTVQSERKGKRKKEKQEKRRLSVLEDNDI SSRRNDGDDNEAENNNICPVTQITNRKEDLMSISENVELKNMKENSLIPDKQSDSPRT ASTSRVKTQDLHVDGNLVIPEVKDNKTFQIGKMVKTYHRKRKRSSDLLGDTFEPVREN GMMQTSIDHLEKEHTTGISESRLHGVLLGEHAMPARLLEEALGNSTGSEAALKGRKRK RTKKLKESLCKYPDQKDVEIETNMKEFIPSPSNLAVTKDDVALKATVKENNLSRTLYP SLERICISHPKKKLLVLDLNGILVDVAQKPGEFKPDIRLSGKGVFKRPFCDDFLEFCF RTFNVGIWSSRIKKNVKRLVAFLMKKWRRNLLFCWHRKQCTITKFKTIEDKKKPLVLK ELSKLWGRHSPNVPWEKGEYDESNTLLLDDSPYKALHNPANTAVFPYPYQYRDTKDSS LGCGGDIRTYLEGLAAAENVQKYVEQNPFGQPAITESNPHWDFYCQIIDKKK" CDS complement(join(21375077..21375231,21376003..21376063, 21376193..21376378,21378274..21378340,21378491..21378572, 21378672..21380847)) /locus_tag="TCM_014294" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m003957; weak similarity to Haloacid dehalogenase-like hydrolase (HAD) superfamily protein" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22100.1" /db_xref="TAIR:AT4G26190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H496" /translation="MESSSVPESSPSNVKLSRSEKKKMKKQRKHRAIQNGSAESKEEE TSLGTDSNLESKADVSLDSGLQQGENCSSKDAHLEIEHLTPMRRKKKRKENSLIDDSK VNIGVESGLKEEVNSSVKDTLVEKDSHSGTLESIGFKSGLKESQLNEQPAHSERKRKR KKDRKMAIRGQYGEEGPKSVLLFRDGNENAIIDENQSHSHAESKVTVSLESVEKSSLE PALKGSQVNKQPAASEKKSKRKREHKMAKAGQFEKLDQKSAVELRNGKENALIDEIQS DSWVESKLNVSLESGLKEGANSLMEDSLWERDSHVETLNKISLGSVLKGSQLNEQLAD PGRKRKRKRERKVAKPEQFEKLDAKCVLELRDRKENSLIDEKQNDSHVESKMNVSSES GLKEEANRDVDTLKNISLESGLKGTQSNEQTVQSERKGKRKKEKQEKRRLSVLEDNDI SSRRNDGDDNEAENNNICPVTQITNRKEDLMSISENVELKNMKENSLIPDKQSDSPRT ASTSRVKTQDLHVDGNLVIPEVKDNKTFQIGKMVKTYHRKRKRSSDLLGDTFEPVREN GMMQTSIDHLEKEHTTGISESRLHGVLLGEHAMPARLLEEALGNSTGSEAALKGRKRK RTKKLKESLCKYPDQKDVEIETNMKEFIPSPSNLAVTKDDVALKATVKENNLSRTLYP SLERICISHPKKKLLVLDLNGILVDVAQKPGEFKPDIRLSGKGVFKRPFCDDFLEFCF RTFNVGIWSSRIKKNVKRLVAFLMKKWRRNLLFCWHRKQCTITKFKTIEDKKKPLVLK ELSKLWGRHSPNVPWEKGEYDESNTLLLDDSPYKALHNPANTAVFPYPYQYRDTKDSS LGCGGDIRTYLEGLAAAENVQKYVEQNPFGQPAITESNPHWDFYCQIIDKKK" mRNA complement(join(21375535..21376063,21376193..21376378, 21378274..21378340,21378491..21378572,21378672..21380882, 21381081..21381466)) /locus_tag="TCM_014294" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008112001" /inference="similar to AA sequence:ricco:30138.m003957" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b013817t1a4; weak similarity to Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; inference alignment:Newbler:10:TSA:cgbaP2_g01145t00002" CDS complement(join(21375971..21376063,21376193..21376378, 21378274..21378340,21378491..21378572,21378672..21380847)) /locus_tag="TCM_014294" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30138.m003957; weak similarity to Haloacid dehalogenase-like hydrolase (HAD) superfamily protein" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY22101.1" /db_xref="TAIR:AT4G26190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H496" /translation="MESSSVPESSPSNVKLSRSEKKKMKKQRKHRAIQNGSAESKEEE TSLGTDSNLESKADVSLDSGLQQGENCSSKDAHLEIEHLTPMRRKKKRKENSLIDDSK VNIGVESGLKEEVNSSVKDTLVEKDSHSGTLESIGFKSGLKESQLNEQPAHSERKRKR KKDRKMAIRGQYGEEGPKSVLLFRDGNENAIIDENQSHSHAESKVTVSLESVEKSSLE PALKGSQVNKQPAASEKKSKRKREHKMAKAGQFEKLDQKSAVELRNGKENALIDEIQS DSWVESKLNVSLESGLKEGANSLMEDSLWERDSHVETLNKISLGSVLKGSQLNEQLAD PGRKRKRKRERKVAKPEQFEKLDAKCVLELRDRKENSLIDEKQNDSHVESKMNVSSES GLKEEANRDVDTLKNISLESGLKGTQSNEQTVQSERKGKRKKEKQEKRRLSVLEDNDI SSRRNDGDDNEAENNNICPVTQITNRKEDLMSISENVELKNMKENSLIPDKQSDSPRT ASTSRVKTQDLHVDGNLVIPEVKDNKTFQIGKMVKTYHRKRKRSSDLLGDTFEPVREN GMMQTSIDHLEKEHTTGISESRLHGVLLGEHAMPARLLEEALGNSTGSEAALKGRKRK RTKKLKESLCKYPDQKDVEIETNMKEFIPSPSNLAVTKDDVALKATVKENNLSRTLYP SLERICISHPKKKLLVLDLNGILVDVAQKPGEFKPDIRLSGKGVFKRPFCDDFLEFCF RTFNVGIWSSRIKKNVKRLVAFLMKKWRRNLLFCWHRKQCTITKFKTIEDKKKPLVLK ELSKLWGRHSPNVPWEKGEYDESNTLLLDDSPYKALHNPANTAVFPYPYQYRDTKDSS LGEIWASIFWN" gene complement(21382457..21395363) /locus_tag="TCM_014295" /note="dbxref CacaoGD:Thecc1EG014295" mRNA complement(join(21382457..21382802,21382930..21383056, 21383122..21383212,21383772..21386292,21386466..21387222, 21387481..21387681,21388059..21389375,21390076..21390341, 21394891..21395363)) /locus_tag="TCM_014295" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008114001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; weak similarity to Histone-lysine N-methyltransferases; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc154t7" mRNA complement(join(21382779..21382802,21382930..21383212, 21383772..21386292,21386466..21387222,21387481..21387681, 21388059..21389375,21390076..21390256)) /locus_tag="TCM_014295" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008114001" /inference="alignment:exonerate- protein:2:ricco:30138.m003956" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc154t1; alternateUTRof:Thecc1EG014295t1; weak similarity to Histone-lysine N-methyltransferases; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc154t7; inference alignment:Newbler:10:TSA:cgbaP1_g03051t00001" CDS complement(join(21383183..21383212,21383772..21386292, 21386466..21387222,21387481..21387681,21388059..21389289)) /locus_tag="TCM_014295" /note="encoded by transcript variant 1; alternatively spliced; weak similarity to Histone-lysine N-methyltransferases" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22102.1" /db_xref="TAIR:AT3G26850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLL9" /translation="MYTQGSHNPQPQQGTQKPMSSLYQQRLPGPPPSLPHFQQGPLAY TYQIPPGGLPNTGQSYLHPPIHVHRGALLPHMYQTAQQNSQHHSHLGAQNAHNMPQLV LPSPISASHTEVSQAQPHPRALPPPPPPPPQSQRQTFYRAPVNPLPQKPGLPHISSHP PLPPTTSFFTSAPLGSLVHSTGGDHNVLSTASLPPPPLPSSPPPILPSPPPSTSTPFS FSKPVQISSNLPCHLDSDGSKLSASGSMDEVAAPNQVKHNLIADNGSLNKGVGNGCDM SSLVGDKLSLEVCLTNDHSSTPLKPTDEKVVERIEALCQCIAKNGPDYEDMVRKKESS KPEYAFLHGGELGSEAAIAHDFFQWMKKKSILSCKLDERQGNSTLRPSKNEPSEQPFN LVITAASYLPDDSDMEMEDDITQIDDEQETNRSLEGLDSQCDINDNMLNVKEQLHPLK ISAECNSYKDVSSEKESAAGSSGLGEQGPEGIANADKKAIGASVSKVIAVKNLAVPTE QPLVTSLEKLDTSSQLAKGGSPFRLLQDYASDDNTEKDVENCVENTCVSLGANLHRDA GSSLENVSSHCKTEKGFGPLYILSIPCAVASSEVVEGTVTTSSINGNEHVDNKHVHQI SIHHAASMEVFQKENVMVGASVGSARFSKVNRQEEENGTLGFTQQKVDKFGRLARDGA SDSDDDSHYIGRHRRGRSWSRSRSRSPPDRRRRRSPRRRREKRSRSRSWSPRNCRSRS RSPRNRRSRSRSPRTRRSRSRSPRNHRSKSRSPNFRRAGEFIGENKRRVKGQMPDCFD FRRGRCYRGASCRYLHHDSSKSDEPLRQRNKQQYLEFPQSSRTNVHEEIKQISERVCD HDHDEVRDPEVKPYSNFFASRDMNIDRKREDSVGGGVHNQDRQSTEYYMVTSEKCRDI PAPVFGGHLVENKQKGPSPVTNEDCQEAAESHHPSIVDTLSVGYIDKLKSFDNASQKI LMSFKNSDQKSLSNPLDQVCQNADCRPLQSDNSSVSDSSPLKTTTSSPNRHTKSNAHP NTMELYNHPSQIPSPSFPHSQGIDNPHMKQQQTASSMFQSSGESFPSYMLPNQHSYFA LQPNSSSTSLPPPPPLPPQDVTVNSGTVTPGVSSHFRQSHLPLRNDFGSQIGPRSYPT EFPAHSQSDGFQQQAYLPIQEANRPFLHASLPVYNMPIQQFGAPSMSRDDGLTQPPTH NVIASNSFAQGNTHPHTMPFSEQLLGNKMQPFPGESLPSGGLSNSSSYIHPYSQQQQP PNSSHHPMVDNIHNLTGKMNSSIKDPPDIRDTTSHRVDIGGSTSSTFPDPYASNLDQP LNSKYSSDVLRQEKDKTYNNSPFSLTHAPVDGRSIGSQQATSSPNSARAIGQNFPRSG GDQYDPLFDSIEPSSRLSRKFDYIQKLEVTGDSDILLGLTGSNKPLDMEENDRRKDGG AVASAASADNEEFGETADAEVGAIENGSPSNQVEVNMTTGEIEIDQIKSPGKSKENKG SRSMKLFKVALADFVKEVLKPSWRQGNMSKEAFKTIVKKTVDKVSGAMKSYQIPKSRA KIDQYIESSQRKLTKLVMGYVDKYVKV" CDS complement(join(21383183..21383212,21383772..21386292, 21386466..21387222,21387481..21387681,21388059..21389289)) /locus_tag="TCM_014295" /note="encoded by transcript variant 2; alternatively spliced; weak similarity to Histone-lysine N-methyltransferases" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22103.1" /db_xref="TAIR:AT3G26850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLL9" /translation="MYTQGSHNPQPQQGTQKPMSSLYQQRLPGPPPSLPHFQQGPLAY TYQIPPGGLPNTGQSYLHPPIHVHRGALLPHMYQTAQQNSQHHSHLGAQNAHNMPQLV LPSPISASHTEVSQAQPHPRALPPPPPPPPQSQRQTFYRAPVNPLPQKPGLPHISSHP PLPPTTSFFTSAPLGSLVHSTGGDHNVLSTASLPPPPLPSSPPPILPSPPPSTSTPFS FSKPVQISSNLPCHLDSDGSKLSASGSMDEVAAPNQVKHNLIADNGSLNKGVGNGCDM SSLVGDKLSLEVCLTNDHSSTPLKPTDEKVVERIEALCQCIAKNGPDYEDMVRKKESS KPEYAFLHGGELGSEAAIAHDFFQWMKKKSILSCKLDERQGNSTLRPSKNEPSEQPFN LVITAASYLPDDSDMEMEDDITQIDDEQETNRSLEGLDSQCDINDNMLNVKEQLHPLK ISAECNSYKDVSSEKESAAGSSGLGEQGPEGIANADKKAIGASVSKVIAVKNLAVPTE QPLVTSLEKLDTSSQLAKGGSPFRLLQDYASDDNTEKDVENCVENTCVSLGANLHRDA GSSLENVSSHCKTEKGFGPLYILSIPCAVASSEVVEGTVTTSSINGNEHVDNKHVHQI SIHHAASMEVFQKENVMVGASVGSARFSKVNRQEEENGTLGFTQQKVDKFGRLARDGA SDSDDDSHYIGRHRRGRSWSRSRSRSPPDRRRRRSPRRRREKRSRSRSWSPRNCRSRS RSPRNRRSRSRSPRTRRSRSRSPRNHRSKSRSPNFRRAGEFIGENKRRVKGQMPDCFD FRRGRCYRGASCRYLHHDSSKSDEPLRQRNKQQYLEFPQSSRTNVHEEIKQISERVCD HDHDEVRDPEVKPYSNFFASRDMNIDRKREDSVGGGVHNQDRQSTEYYMVTSEKCRDI PAPVFGGHLVENKQKGPSPVTNEDCQEAAESHHPSIVDTLSVGYIDKLKSFDNASQKI LMSFKNSDQKSLSNPLDQVCQNADCRPLQSDNSSVSDSSPLKTTTSSPNRHTKSNAHP NTMELYNHPSQIPSPSFPHSQGIDNPHMKQQQTASSMFQSSGESFPSYMLPNQHSYFA LQPNSSSTSLPPPPPLPPQDVTVNSGTVTPGVSSHFRQSHLPLRNDFGSQIGPRSYPT EFPAHSQSDGFQQQAYLPIQEANRPFLHASLPVYNMPIQQFGAPSMSRDDGLTQPPTH NVIASNSFAQGNTHPHTMPFSEQLLGNKMQPFPGESLPSGGLSNSSSYIHPYSQQQQP PNSSHHPMVDNIHNLTGKMNSSIKDPPDIRDTTSHRVDIGGSTSSTFPDPYASNLDQP LNSKYSSDVLRQEKDKTYNNSPFSLTHAPVDGRSIGSQQATSSPNSARAIGQNFPRSG GDQYDPLFDSIEPSSRLSRKFDYIQKLEVTGDSDILLGLTGSNKPLDMEENDRRKDGG AVASAASADNEEFGETADAEVGAIENGSPSNQVEVNMTTGEIEIDQIKSPGKSKENKG SRSMKLFKVALADFVKEVLKPSWRQGNMSKEAFKTIVKKTVDKVSGAMKSYQIPKSRA KIDQYIESSQRKLTKLVMGYVDKYVKV" mobile_element complement(21390629..21391763) /note="source:CACAO_on_E59_A_scaffold_8 1866 2987" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21391741..21391879 /note="source:CACAO_PIF_E31_scaffold_2 4058 4198" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(21391756..21393174) /note="source:CACAO_PIF_E144_scaffold_10 11918 13335" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21393153..21393698 /note="source:INTACT59_F126_scaffold_9-int 14336 14899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21393801..21396614) /note="source:INTACT579_F10_scaffold_3-int 3180 4931" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21396780..21398494) /note="source:INTACT89_F140_scaffold_9-int 14217 15987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21398491..21400959) /note="source:CACAO_PIF_E38_scaffold_2 648 3145" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21400975..21401305 /note="source:CACAO_on_E681_scaffold_9 4355 4699" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(21401014..21401703) /note="source:CACAO_on_E614_scaffold_6 1 653" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21401702..21402965 /note="source:CACAO_PIF_E38_scaffold_2 1624 2908" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21402957..21403212 /note="source:CACAO_PIF_E144_scaffold_10 13054 13306" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21402983..21403219 /note="source:CACAO_MITE_S202_scaffold_8 335 571" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(21404128..21404270) /note="source:scaffold_1_CACTA_0030 422 548" /mobile_element_type="transposon:TIR/CACTA" gene 21404348..21406975 /locus_tag="TCM_014299" /note="dbxref CacaoGD:Thecc1EG014299" mRNA join(21404348..21404440,21405192..21405504, 21406623..21406974) /locus_tag="TCM_014299" /product="SPIRAL1-like1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m003955" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018817t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400002460" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03051t00002; alternateUTRof:Thecc1EG014299t1; inference alignment:Newbler:10:TSA:cgbaP2_g02828t00001; inference alignment:Newbler:10:TSA:cgbaP1_g01213t00001" mRNA join(21404438..21404577,21405192..21405504, 21406623..21406975) /locus_tag="TCM_014299" /product="SPIRAL1-like1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m003955" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018817t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400002460" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02828t00001; inference alignment:Newbler:10:TSA:cgbaP2_g02828t00001" CDS join(21405223..21405504,21406623..21406703) /locus_tag="TCM_014299" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG018817t1" /codon_start=1 /product="SPIRAL1-like1, putative isoform 1" /protein_id="EOY22104.1" /db_xref="Phytozome:PGSC0003DMP400002460" /db_xref="TAIR:AT1G26355.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZC2" /translation="MGRGVSSGGGQSSLGYLFGSGEAPKPTANGNVTGTSTASEVPKT QNEVAKETPQKPTTTSPPADVARQVPAGIPGNNANNYFRADGQNCGNFLTDRRTTKVH AAPGGGSSLDYLFGGNEK" CDS join(21405223..21405504,21406623..21406703) /locus_tag="TCM_014299" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG018817t1" /codon_start=1 /product="SPIRAL1-like1, putative isoform 1" /protein_id="EOY22105.1" /db_xref="Phytozome:PGSC0003DMP400002460" /db_xref="TAIR:AT1G26355.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZC2" /translation="MGRGVSSGGGQSSLGYLFGSGEAPKPTANGNVTGTSTASEVPKT QNEVAKETPQKPTTTSPPADVARQVPAGIPGNNANNYFRADGQNCGNFLTDRRTTKVH AAPGGGSSLDYLFGGNEK" gene complement(21407613..21414718) /locus_tag="TCM_014300" /note="dbxref CacaoGD:Thecc1EG014300" mRNA complement(join(21407613..21408028,21408782..21408921, 21409918..21410128,21410278..21410461,21410977..21411150, 21411294..21411458,21411971..21412123,21412316..21412468, 21412765..21412932,21413563..21413712,21414317..21414718)) /locus_tag="TCM_014300" /product="Galactose oxidase/kelch repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07040.1" /inference="similar to AA sequence:ricco:30138.m003954" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1455t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4535t1" mRNA complement(join(21407736..21408355,21408777..21408921, 21409918..21410119,21410278..21410461,21410977..21411150, 21411294..21411458,21411971..21412123,21412316..21412468, 21412765..21412932,21413563..21413712,21414317..21414671)) /locus_tag="TCM_014300" /product="Galactose oxidase/kelch repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07040.1" /inference="similar to AA sequence:ricco:30138.m003954" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4535t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4535t1" mRNA complement(join(21407736..21408355,21408777..21408921, 21409918..21410128,21410278..21410461,21410977..21411150, 21411294..21411458,21411971..21412123,21412316..21412468, 21412765..21412932,21413563..21413712,21414317..21414671)) /locus_tag="TCM_014300" /product="Galactose oxidase/kelch repeat superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07040.1" /inference="similar to AA sequence:ricco:30138.m003954" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4535t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4535t1" CDS complement(join(21407986..21408028,21408782..21408921, 21409918..21410128,21410278..21410461,21410977..21411150, 21411294..21411458,21411971..21412123,21412316..21412468, 21412765..21412932,21413563..21413712,21414317..21414500)) /locus_tag="TCM_014300" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m003954" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 2" /protein_id="EOY22107.1" /db_xref="TAIR:AT1G18610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIL1" /translation="MRWEKVRLCQQDVGGVGEACPGPGKRWGHTCNSIKGGRFLYVFG GYGKDNCQTNQVHVFDTAKQTWSQPVMKGTPPTPRDSHSCTTVGDNLFVFGGTDGMNP LKDLHILDTATHTWICPSVRGEGPQAREGHSAALVGKRLFIFGGCGKSSDNNDEIYYN DLYILNTETFVWKRGTTSGDPPSARDSHTCSSWKNKIIVIGGEDGNDYYLSDVHILDA DTLAWKELNTSGQILPPRAGHSTVALGKNLFVFGGFTDAQNLYDDLYMLDIDTGMWTR VITVGDGPSARFSVAGDCLDPLKSGVLVFIGGCNKTLEALDDMYYLYTGLVVRDERKP ENLSLRKQLKLKCQEQNLSNLVHDKALVRIEVSNDVHQPIPLSSYGQPRRENFPLNQV LLQGKKTFQAKVTESFSHGYTIETVIDGKPLRGILFANKSSSIHVANHNFSSHFRKRT TTEVGGTVLNGDCNTKSKSSRSMRQDFGDHKQADVHEKDSSLHETKAPAPVSRNPAPS DLSTHKDPANQEPLVAHLNLNDDKAGDAPNSDSEFPEGIGSTRAGCSVTLSPRSRWLL QRGKVMLQ" CDS complement(join(21408303..21408355,21408777..21408921, 21409918..21410119,21410278..21410461,21410977..21411150, 21411294..21411458,21411971..21412123,21412316..21412468, 21412765..21412932,21413563..21413712,21414317..21414500)) /locus_tag="TCM_014300" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003954" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 1" /protein_id="EOY22106.1" /db_xref="TAIR:AT1G18610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIL1" /translation="MRWEKVRLCQQDVGGVGEACPGPGKRWGHTCNSIKGGRFLYVFG GYGKDNCQTNQVHVFDTAKQTWSQPVMKGTPPTPRDSHSCTTVGDNLFVFGGTDGMNP LKDLHILDTATHTWICPSVRGEGPQAREGHSAALVGKRLFIFGGCGKSSDNNDEIYYN DLYILNTETFVWKRGTTSGDPPSARDSHTCSSWKNKIIVIGGEDGNDYYLSDVHILDA DTLAWKELNTSGQILPPRAGHSTVALGKNLFVFGGFTDAQNLYDDLYMLDIDTGMWTR VITVGDGPSARFSVAGDCLDPLKSGVLVFIGGCNKTLEALDDMYYLYTGLVVRDERKP ENLSLRKQLKLKCQEQNLSNLVHDKALVRIEVSNDVHQPIPLSSYGQPRRENFPLNQV LLQGKKTFQAKVTESFSHGYTIETVIDGKPLRGILFANKSSSIHVANHNFSRKRTTTE VGGTVLNGDCNTKSKSSRSMRQDFGDHKQADVHEKDSSLHETKAPAPVSRNPAPSDLS THKDPANQEPLVAHLNLNDDKAGDAPNSDSEFPEGIGSTRAGCSVTLSPRQDERRPNT LEHNNPEKSL" CDS complement(join(21408303..21408355,21408777..21408921, 21409918..21410128,21410278..21410461,21410977..21411150, 21411294..21411458,21411971..21412123,21412316..21412468, 21412765..21412932,21413563..21413712,21414317..21414500)) /locus_tag="TCM_014300" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30138.m003954" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 3" /protein_id="EOY22108.1" /db_xref="TAIR:AT1G18610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIL1" /translation="MRWEKVRLCQQDVGGVGEACPGPGKRWGHTCNSIKGGRFLYVFG GYGKDNCQTNQVHVFDTAKQTWSQPVMKGTPPTPRDSHSCTTVGDNLFVFGGTDGMNP LKDLHILDTATHTWICPSVRGEGPQAREGHSAALVGKRLFIFGGCGKSSDNNDEIYYN DLYILNTETFVWKRGTTSGDPPSARDSHTCSSWKNKIIVIGGEDGNDYYLSDVHILDA DTLAWKELNTSGQILPPRAGHSTVALGKNLFVFGGFTDAQNLYDDLYMLDIDTGMWTR VITVGDGPSARFSVAGDCLDPLKSGVLVFIGGCNKTLEALDDMYYLYTGLVVRDERKP ENLSLRKQLKLKCQEQNLSNLVHDKALVRIEVSNDVHQPIPLSSYGQPRRENFPLNQV LLQGKKTFQAKVTESFSHGYTIETVIDGKPLRGILFANKSSSIHVANHNFSSHFRKRT TTEVGGTVLNGDCNTKSKSSRSMRQDFGDHKQADVHEKDSSLHETKAPAPVSRNPAPS DLSTHKDPANQEPLVAHLNLNDDKAGDAPNSDSEFPEGIGSTRAGCSVTLSPRQDERR PNTLEHNNPEKSL" mobile_element complement(21417286..21417356) /note="source:scaffold_1_CACTA_0031 14 82" /mobile_element_type="transposon:TIR/CACTA" gene complement(21417646..21423622) /locus_tag="TCM_014301" /note="dbxref CacaoGD:Thecc1EG014301" mRNA complement(join(21417646..21418304,21418427..21418624, 21418707..21418814,21418966..21419073,21419207..21419272, 21419366..21419441,21419579..21419711,21419839..21419983, 21420070..21420180,21420779..21420897,21420987..21421158, 21421262..21421361,21421499..21421623,21421767..21421841, 21421927..21421962,21422050..21422121,21422802..21422862, 21423029..21423099,21423333..21423622)) /locus_tag="TCM_014301" /product="Transporter associated with antigen processing protein 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008121001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046755t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008121001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4542t3" mRNA complement(join(21417646..21418304,21418427..21418624, 21418707..21418814,21418966..21419073,21419207..21419272, 21419366..21419441,21419579..21419711,21419839..21419983, 21420070..21420180,21420779..21420897,21420987..21421158, 21421262..21421361,21421499..21422121,21422802..21422913, 21423029..21423183)) /locus_tag="TCM_014301" /product="Transporter associated with antigen processing protein 2 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008121001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046755t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008121001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b013824t1a3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1354t7" mRNA complement(join(21417834..21418304,21418427..21418624, 21418707..21418814,21418966..21419073,21419207..21419272, 21419366..21419441,21419579..21419711,21419839..21419983, 21420070..21420180,21420779..21420897,21420987..21421158, 21421262..21421361,21421499..21421623,21421767..21421841, 21421927..21421962,21422050..21422121,21422802..21422876, 21423029..21423370)) /locus_tag="TCM_014301" /product="Transporter associated with antigen processing protein 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008121001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046755t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008121001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1354t2; alternateUTRof:Thecc1EG014301t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4542t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1354t7" mRNA complement(join(21417834..21418304,21418427..21418624, 21418707..21418814,21418966..21419073,21419207..21419272, 21419366..21419441,21419579..21419711,21419839..21419983, 21420070..21420180,21420779..21420897,21420987..21421158, 21421262..21421361,21421499..21421623,21421767..21421841, 21421927..21421962,21422050..21422121,21422802..21422913, 21423029..21423370)) /locus_tag="TCM_014301" /product="Transporter associated with antigen processing protein 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008121001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046755t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008121001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1354t3; alternateUTRof:Thecc1EG014301t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4542t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1354t7" CDS complement(join(21418101..21418304,21418427..21418624, 21418707..21418814,21418966..21419073,21419207..21419272, 21419366..21419441,21419579..21419711,21419839..21419983, 21420070..21420180,21420779..21420897,21420987..21421158, 21421262..21421361,21421499..21421623,21421767..21421841, 21421927..21421962,21422050..21422121,21422802..21422846)) /locus_tag="TCM_014301" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046755t1" /codon_start=1 /product="Transporter associated with antigen processing protein 2 isoform 1" /protein_id="EOY22109.1" /db_xref="Phytozome:GSVIVT01008121001" /db_xref="TAIR:AT5G39040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIL4" /translation="MRFGGSERTPLLDRGGRRKRNETLENDNLTDLEHGDAVPAANVS FTRVFSLAKPDAGKLILATIALLIASTSSILIPKFGGKIIDIVSGDIRTPEQKAEALT AVRNTILEIFLIVVVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDITR TGELLSRLSEDTQIIKNAATSNLSEALRNLSTAFIGLGFMFATSWKLTLLALAVVPAI SVAVQKFGRFLRELSHKTQAAAAAAASISEESFGAIRTVRSFAQEGYEITRYSEKVDE TLNLGLKQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTV GSSVSGLSGLYTVAMKAAGASRRVFQLLDRSSSMPKSGNKCPLGDQDGEVELDDVWFA YPSRPNHMVLKGITLKLQPGSKVALVGPSGGGKSTIANLIERFYDPMKGKILLNGVPL VEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCEGKANINDIENAAKMANAHEFISK FPDKYQTHVGERGVRLSGGQKQRVAIARALLMDPKILLLDEATSALDAESEYLVQDAM DSLMKGRTVLVIAHRLSTVQTADTVAVVSDGQVVESGTHEELLGKDGIYTALVRRQLQ APKANL" CDS complement(join(21418101..21418304,21418427..21418624, 21418707..21418814,21418966..21419073,21419207..21419272, 21419366..21419441,21419579..21419711,21419839..21419983, 21420070..21420180,21420779..21420897,21420987..21421158, 21421262..21421361,21421499..21421623,21421767..21421841, 21421927..21421962,21422050..21422121,21422802..21422846)) /locus_tag="TCM_014301" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046755t1" /codon_start=1 /product="Transporter associated with antigen processing protein 2 isoform 1" /protein_id="EOY22110.1" /db_xref="Phytozome:GSVIVT01008121001" /db_xref="TAIR:AT5G39040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIL4" /translation="MRFGGSERTPLLDRGGRRKRNETLENDNLTDLEHGDAVPAANVS FTRVFSLAKPDAGKLILATIALLIASTSSILIPKFGGKIIDIVSGDIRTPEQKAEALT AVRNTILEIFLIVVVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDITR TGELLSRLSEDTQIIKNAATSNLSEALRNLSTAFIGLGFMFATSWKLTLLALAVVPAI SVAVQKFGRFLRELSHKTQAAAAAAASISEESFGAIRTVRSFAQEGYEITRYSEKVDE TLNLGLKQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTV GSSVSGLSGLYTVAMKAAGASRRVFQLLDRSSSMPKSGNKCPLGDQDGEVELDDVWFA YPSRPNHMVLKGITLKLQPGSKVALVGPSGGGKSTIANLIERFYDPMKGKILLNGVPL VEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCEGKANINDIENAAKMANAHEFISK FPDKYQTHVGERGVRLSGGQKQRVAIARALLMDPKILLLDEATSALDAESEYLVQDAM DSLMKGRTVLVIAHRLSTVQTADTVAVVSDGQVVESGTHEELLGKDGIYTALVRRQLQ APKANL" CDS complement(join(21418101..21418304,21418427..21418624, 21418707..21418814,21418966..21419073,21419207..21419272, 21419366..21419441,21419579..21419711,21419839..21419983, 21420070..21420180,21420779..21420897,21420987..21421158, 21421262..21421361,21421499..21421623,21421767..21421841, 21421927..21421962,21422050..21422121,21422802..21422846)) /locus_tag="TCM_014301" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG046755t1" /codon_start=1 /product="Transporter associated with antigen processing protein 2 isoform 1" /protein_id="EOY22111.1" /db_xref="Phytozome:GSVIVT01008121001" /db_xref="TAIR:AT5G39040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIL4" /translation="MRFGGSERTPLLDRGGRRKRNETLENDNLTDLEHGDAVPAANVS FTRVFSLAKPDAGKLILATIALLIASTSSILIPKFGGKIIDIVSGDIRTPEQKAEALT AVRNTILEIFLIVVVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDITR TGELLSRLSEDTQIIKNAATSNLSEALRNLSTAFIGLGFMFATSWKLTLLALAVVPAI SVAVQKFGRFLRELSHKTQAAAAAAASISEESFGAIRTVRSFAQEGYEITRYSEKVDE TLNLGLKQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTV GSSVSGLSGLYTVAMKAAGASRRVFQLLDRSSSMPKSGNKCPLGDQDGEVELDDVWFA YPSRPNHMVLKGITLKLQPGSKVALVGPSGGGKSTIANLIERFYDPMKGKILLNGVPL VEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCEGKANINDIENAAKMANAHEFISK FPDKYQTHVGERGVRLSGGQKQRVAIARALLMDPKILLLDEATSALDAESEYLVQDAM DSLMKGRTVLVIAHRLSTVQTADTVAVVSDGQVVESGTHEELLGKDGIYTALVRRQLQ APKANL" CDS complement(join(21418101..21418304,21418427..21418624, 21418707..21418814,21418966..21419073,21419207..21419272, 21419366..21419441,21419579..21419711,21419839..21419983, 21420070..21420180,21420779..21420897,21420987..21421158, 21421262..21421361,21421499..21421632)) /locus_tag="TCM_014301" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG046755t1" /codon_start=1 /product="Transporter associated with antigen processing protein 2 isoform 4" /protein_id="EOY22112.1" /db_xref="Phytozome:GSVIVT01008121001" /db_xref="TAIR:AT5G39040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIL4" /translation="MLQPKFGGKIIDIVSGDIRTPEQKAEALTAVRNTILEIFLIVVV GSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDITRTGELLSRLSEDTQII KNAATSNLSEALRNLSTAFIGLGFMFATSWKLTLLALAVVPAISVAVQKFGRFLRELS HKTQAAAAAAASISEESFGAIRTVRSFAQEGYEITRYSEKVDETLNLGLKQAKVVGLF FGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSGLYTVAM KAAGASRRVFQLLDRSSSMPKSGNKCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITL KLQPGSKVALVGPSGGGKSTIANLIERFYDPMKGKILLNGVPLVEISHEHLHRKISIV SQEPVLFNCSIEENIAYGCEGKANINDIENAAKMANAHEFISKFPDKYQTHVGERGVR LSGGQKQRVAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR LSTVQTADTVAVVSDGQVVESGTHEELLGKDGIYTALVRRQLQAPKANL" mRNA complement(join(<21418786..21418809,21418966..21419073, 21419207..21419272,21419366..21419441,21419579..21419711, 21419839..21419983,21420070..21420180,21420779..21420897, 21420987..21421158,21421262..21421361,21421499..21421623, 21421767..21421841,21421927..21421962,21422050..21422121, 21422802..21423370)) /locus_tag="TCM_014301" /product="Transporter associated with antigen processing protein 2 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008121001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046755t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008121001" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1354t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4542t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1354t7" CDS complement(join(<21418786..21418809,21418966..21419073, 21419207..21419272,21419366..21419441,21419579..21419711, 21419839..21419983,21420070..21420180,21420779..21420897, 21420987..21421158,21421262..21421361,21421499..21421623, 21421767..21421841,21421927..21421962,21422050..21422121, 21422802..21422846)) /locus_tag="TCM_014301" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG046755t1" /codon_start=1 /product="Transporter associated with antigen processing protein 2 isoform 5" /protein_id="EOY22113.1" /db_xref="Phytozome:GSVIVT01008121001" /db_xref="TAIR:AT5G39040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIL4" /translation="MRFGGSERTPLLDRGGRRKRNETLENDNLTDLEHGDAVPAANVS FTRVFSLAKPDAGKLILATIALLIASTSSILIPKFGGKIIDIVSGDIRTPEQKAEALT AVRNTILEIFLIVVVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDITR TGELLSRLSEDTQIIKNAATSNLSEALRNLSTAFIGLGFMFATSWKLTLLALAVVPAI SVAVQKFGRFLRELSHKTQAAAAAAASISEESFGAIRTVRSFAQEGYEITRYSEKVDE TLNLGLKQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTV GSSVSGLSGLYTVAMKAAGASRRVFQLLDRSSSMPKSGNKCPLGDQDGEVELDDVWFA YPSRPNHMVLKGITLKLQPGSKVALVGPSGGGKSTIANLIERFYDPMKGKILLNGVPL VEISHEHLHRKHSKPGTCP" gene 21423728..21426429 /locus_tag="TCM_014302" /note="dbxref CacaoGD:Thecc1EG014302" mRNA join(21423728..21423895,21423992..21424022, 21424271..21426429) /locus_tag="TCM_014302" /product="Pentatricopeptide repeat-containing protein, putative" /inference="similar to AA sequence:ricco:30138.m003949" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01453t00001" CDS join(21423821..21423895,21423992..21424022, 21424271..21425649) /locus_tag="TCM_014302" /note="dbxref ricco:30138.m003949" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative" /protein_id="EOY22114.1" /db_xref="TAIR:AT5G60960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLL2" /translation="MIGALERFGGVTRSTDDNSKTRYNGAQMATTSRSLAFLLSKPFS TQSPDPIAQSLSTEILKNPDLDPLPITQRLQLSFSHIKPTSLLISQTLNLSPEAGRTV LGFNDWLLSDPNFNHTDETLSFFIDYFGRRKDFKAAHDLLVNNKSVAGPKTFESSVDR LVRAGRPAQVLGFFEGMGKDYGFKRDKESLRLIVEKLCENGYASYAEKMVKNSANEIF PDEMICDLLIKGWCVDGKLEEAKRLAGEMYRGGFEIGTMAYNAMLDCVCKLCRKKDPF RLHSEAEKVLLDMDIYGVPRNVETFNVLMNNLCKIRKTEDAMKLFYRMGEWGCYPDAE SYLILIRSLYQAARVAEGDEMIDRMKSAGFGDKLGEKEYYSFLKILCGVERVEHAIIV FKKMKADGCKPGIKTYDLLMGKWCGHNRLDRANALYNEAVENGVPVEPKPYRVDPRYM KKTKAVKEEKKRETLPEKMARKRRRLKQIRLSFVKKPKRTMRHV" gene complement(21427014..21432959) /locus_tag="TCM_014303" /note="dbxref CacaoGD:Thecc1EG014303" mRNA complement(join(21427014..21427716,21427799..21427855, 21428184..21428292,21429241..21429395,21429498..21429598, 21430388..21430445,21430561..21430612,21430825..21430895, 21431512..21431598,21431680..21431763,21431838..21431910, 21432090..21432201,21432292..21432375,21432475..21432959)) /locus_tag="TCM_014303" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="similar to AA sequence:ricco:30138.m003948" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b013826t1a2" mRNA complement(join(21427028..21427056,21427174..21427716, 21427799..21427855,21428184..21428292,21429241..21429395, 21429498..21429598,21430388..21430445,21430561..21430612, 21430825..21430895,21431512..21431598,21431680..21431763, 21431838..21431910,21432090..21432211,21432292..21432375, 21432475..21432810)) /locus_tag="TCM_014303" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m003948" /inference="similar to AA sequence:ricco:30138.m003948" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4588t6" CDS complement(join(21427561..21427716,21427799..21427855, 21428184..21428292,21429241..21429395,21429498..21429598, 21430388..21430445,21430561..21430612,21430825..21430895, 21431512..21431598,21431680..21431763,21431838..21431910, 21432090..21432211,21432292..21432375,21432475..21432576)) /locus_tag="TCM_014303" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003948" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY22115.1" /db_xref="TAIR:AT5G60940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L4J2" /translation="MEGNNLEQTLQEGKLYRQLNSLIVAHLLHHNLTQAARAVAAATM TPLDVEAPPNKLLELVAKGLAVEKDEMLRGVSSSALFDLGGASAYGSIPAPRVSSVDF SAVQDTKGSSKSFPKHETRHLSEHKNIARCARFSPDGRFVATGSADTSIKLFEISKIK QMMLPDSKDGPVRPVIRTFYDHVQPINDLDFHPQSTVLISGAKDHTIKFFDFSKATAK RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANPPEIGVNGAI NQVRYSSTGGMYVTASKDGAIRLWDGISASCVRSIVGAHGTAEATSACFTKDQRFVLS CGKDSTVKLWEIGTGRLVKQYLGSTHTQSRCQAVFNDTEEFVLSIDEPSNEIVIWDSL TAEKVAKWPSNHIGAPRWIEHSPTEAAFISCGTDRSVRFWKEIL" CDS complement(join(21427561..21427716,21427799..21427855, 21428184..21428292,21429241..21429395,21429498..21429598, 21430388..21430445,21430561..21430612,21430825..21430895, 21431512..21431598,21431680..21431763,21431838..21431910, 21432090..21432187)) /locus_tag="TCM_014303" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m003948" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY22116.1" /db_xref="TAIR:AT5G60940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L4J2" /translation="MLRGVSSSALFDLGGASAYGSIPAPRVSSVDFSAVQDTKGSSKS FPKHETRHLSEHKNIARCARFSPDGRFVATGSADTSIKLFEISKIKQMMLPDSKDGPV RPVIRTFYDHVQPINDLDFHPQSTVLISGAKDHTIKFFDFSKATAKRAFRVIQDTHNV RSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANPPEIGVNGAINQVRYSSTGGMY VTASKDGAIRLWDGISASCVRSIVGAHGTAEATSACFTKDQRFVLSCGKDSTVKLWEI GTGRLVKQYLGSTHTQSRCQAVFNDTEEFVLSIDEPSNEIVIWDSLTAEKVAKWPSNH IGAPRWIEHSPTEAAFISCGTDRSVRFWKEIL" gene 21434903..21439129 /locus_tag="TCM_014305" /note="dbxref CacaoGD:Thecc1EG014305" mRNA join(21434903..21435270,21436404..21436483, 21436929..21437389,21437732..21437944,21438063..21438340, 21438474..21439120) /locus_tag="TCM_014305" /product="COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036566001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018949t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008128001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4607t1" mRNA join(21435024..21435270,21436404..21436483, 21436929..21437385,21437785..21437944,21438063..21438340, 21438474..21439129) /locus_tag="TCM_014305" /product="COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036566001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018949t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008128001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4607t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4607t1" CDS join(21435168..21435270,21436404..21436483, 21436929..21437389,21437732..21437944,21438063..21438340, 21438474..21438766) /locus_tag="TCM_014305" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG018949t1" /codon_start=1 /product="COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family isoform 1" /protein_id="EOY22117.1" /db_xref="Phytozome:GSVIVT01008128001" /db_xref="TAIR:AT5G60920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KT8" /translation="METVLSSASGSISKLCSFTIVLLFLFSCSTFTSTEAYDALDPTG NVTIKWDVISWTPDGYVAVVTIYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGAQTTE QGDCSKFKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWVQDPANAASSFQ VSVGAAGTTNKTVRVPRNFTLRAPGPGYTCGPAKIVRPTKFVTPDKRRITQAMSKMVE QSSNFSLSYLHLIAVTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVSCPTCACGCQN NITEPGSCVSERSPYLASAVSGPGKSSNSPLLQCTSHMCPVRVHWHVKLNYKEYWRVK ITITNFNYRMNYTQWNLVVQHPNFDNLTQLFSFHYKSLTPYAGLNDTAMLWGVKFYND LLSEAGPLGNVQSELLFQKDAATFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNSG FRPVISLCQLVMTILASIVFLWAYM" CDS join(21435168..21435270,21436404..21436483, 21436929..21437385,21437785..21437944,21438063..21438340, 21438474..21438766) /locus_tag="TCM_014305" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG018949t1" /codon_start=1 /product="COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family isoform 2" /protein_id="EOY22118.1" /db_xref="Phytozome:GSVIVT01008128001" /db_xref="TAIR:AT5G60920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KT8" /translation="METVLSSASGSISKLCSFTIVLLFLFSCSTFTSTEAYDALDPTG NVTIKWDVISWTPDGYVAVVTIYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGAQTTE QGDCSKFKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWVQDPANAASSFQ VSVGAAGTTNKTVRVPRNFTLRAPGPGYTCGPAKIVRPTKFVTPDKRRITQAMMTWNV TCTYSQFLAQKTPTCCVSLSSFYNDTIVSCPTCACGCQNNITEPGSCVSERSPYLASA VSGPGKSSNSPLLQCTSHMCPVRVHWHVKLNYKEYWRVKITITNFNYRMNYTQWNLVV QHPNFDNLTQLFSFHYKSLTPYAGLNDTAMLWGVKFYNDLLSEAGPLGNVQSELLFQK DAATFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNSGFRPVISLCQLVMTILASIV FLWAYM" misc_feature join(21435245..21435916,21436407..21436483) /locus_tag="TCM_014305" /note="Gene fragment of Thecc1EG014305t1; dbxref gnl|CacaoGD|Thecc1EG014305t1; quality class is mediumpartial-partof is thecc1eg014305t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc369t7; dbxref CacaoGD:Thecc1EG014306t1" gene complement(21439403..21443127) /locus_tag="TCM_014307" /note="dbxref CacaoGD:Thecc1EG014307" mRNA complement(join(21439403..21439778,21439890..21440167, 21440340..21440487,21440575..21441031,21441561..21441640, 21441755..21442338,21443018..21443127)) /locus_tag="TCM_014307" /product="COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family" /inference="alignment:exonerate- protein:2:TAIR:AT5G15630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018950t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s07110.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc571t3" CDS complement(join(21439498..21439778,21439890..21440167, 21440340..21440487,21440575..21441031,21441561..21441640, 21441755..21441902)) /locus_tag="TCM_014307" /note="paralog of Thecc1EG018950t1" /codon_start=1 /product="COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family" /protein_id="EOY22119.1" /db_xref="Phytozome:POPTR_0015s07110.1" /db_xref="TAIR:AT5G15630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTE0" /translation="MEFDQSTTTSHKFLSISPSYCQCRKCCSFLQLKFICGLVVLFLI MLPNTAAYDPLDPTGNITIKWDIVSWTADGYVAAVTMSNFQMYRSIMSPGWTLGWQWA KKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKNPIVVDLLPGVPYNQQFSNCCKGGVV SAWGQDPIGSVSAFQVSVGVAGTSNKTVKLPTNFSLLGPGPGYTCGPAKVVPSTVYFT PDHRRKTQALMTWNVTCTYSQFLAARNPSCCVSFSSFYNETITPCPSCACGCQNKNNC IRSNSKEAHRAGINTRRKDNTPLLQCTHHMCPIRVHWHVKLNYKDYWRVKIAITNFNY RMNYTQWTLVAQHPNLNAVTQVFSFDYKPLVPYEAINDTGMFYGMKYYNDLLMEAGPQ GNVQSEVLLRKNKDTFTFKQGWAFPRKVYFNGDECLLPPPDTYPFLPNSAHVNPIAIL TMAFSALLFMFNM" gene complement(21443416..21444684) /locus_tag="TCM_014308" /note="dbxref CacaoGD:Thecc1EG014308" mRNA complement(join(21443416..21443971,21444052..21444320, 21444624..21444684)) /locus_tag="TCM_014308" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020842t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage" CDS complement(join(21443628..21443971,21444052..21444298)) /locus_tag="TCM_014308" /note="paralog of Thecc1EG020842t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22120.1" /translation="MIVCGSTIWSLWLARESMFNGKRWDSVEIFNLIHTRSLFWTKAC DGMGSVAEYGWWSEPGNLNIAHAPLHTSVNITWQPPQLEGYVKGLFCSTLGVQDSNYA EIMAIKHALCMYASSPNAGNDQLVVESDSIVPLTWVEKVNHRPWNIWHIFNEIDTIRA TLGRVISQHIMRDGNSYADMLANHGFDCESMFTAWW" mobile_element complement(21445251..21445819) /note="source:INTACT135F_F90_scaffold_2-int 13468 14007" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21446506..21447790) /note="source:INTACT505_F28_scaffold_3-int 12973 14236" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21450374..21453329) /note="source:CACAO_M_E10603_F306_scaffold_2 4817 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21451088..21457362 /locus_tag="TCM_014310" /note="dbxref CacaoGD:Thecc1EG014310" mRNA join(21451088..21451259,21455026..21455391, 21457110..21457362) /locus_tag="TCM_014310" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" CDS join(21451178..21451259,21455026..21455156) /locus_tag="TCM_014310" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22121.1" /translation="MNFLKIWLMPKLILGDTLVEASNRVRQVLSTNTYKIGFKPMHCL HFDEPRTHSTGNATRRRWRCCWRNIK" mobile_element complement(21454927..21455006) /note="source:CACAO_M_E84995_F60_scaffold_10 9129 9216" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21457554..21460630) /locus_tag="TCM_014311" /note="dbxref CacaoGD:Thecc1EG014311" mRNA complement(join(21457554..21458293,21458408..21458685, 21458896..21459043,21459585..21460041,21460226..21460305, 21460403..21460630)) /locus_tag="TCM_014311" /product="COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018950t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s07120.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS complement(join(21458010..21458293,21458408..21458685, 21458896..21459043,21459585..21460041,21460226..21460305, 21460403..21460472)) /locus_tag="TCM_014311" /note="paralog of Thecc1EG018950t1" /codon_start=1 /product="COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family" /protein_id="EOY22122.1" /db_xref="Phytozome:POPTR_0015s07120.1" /db_xref="TAIR:AT5G15630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTE0" /translation="MSFNKFAYPLALATFFATIISQAAAYDPLDPTGNITIKWDVMSW TPDGYVAVVTMTNFQMFRHITSPGWNLGWVWAKKEVIWSMVGAQANDQGDCSKFKGNI PHCCKRNPTVVDLLPGVPYNQQIANCCKGGVVASWGQDPSAAVSSFQLSVGRAGTSNK TVTLPKNFTLLDPALGYTCSQAKKVSSSVFITADGRRKTQALMTWNVTCTYSQILASR YPTCCVSMSSFYNSTVTPCPTCSCGCQSRNQCVSSDSEIRTVVAMNASTSQQTNVVRC TNHMCPIRVHWHVKLNYKEYWRVKMTITNFNYQKNYTQWTLVAQHPNLNNITQVFSFD YKPLNPYQSTNDTGMFYGLKYYNDVLMESGPDGNVQSELILQKDMNTFTFKQGWAFPR KIYFNGDECMMPPPDAYPYLPNSANSNLIASSTMASFLLLVLLVFW" mobile_element 21462661..21464623 /note="source:INTACT461_F221_scaffold_3-int 1 1963" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 21465316..21470155 /note="source:CACAO_M_E22842_F123_scaffold_3 1 4840" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21470810..21476055) /note="source:INTACT501_F232_scaffold_3-int 1 5255" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(21476036..21480290) /locus_tag="TCM_014317" /note="dbxref CacaoGD:Thecc1EG014317" mRNA complement(join(21476036..21476630,21479299..21479368, 21479785..21480290)) /locus_tag="TCM_014317" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(21476506..21476630,21479299..21479368, 21479785..21479934)) /locus_tag="TCM_014317" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22123.1" /translation="MPFTRFECSILVFSFIMSPLIFALAYDLLDLNASINIKWDIMSW TPEGYVDINNAQRLAHVMFLTCEVSNHSQVTWTITCTYSSILVSRNPNCCVSLSSFYN PVITPYPTCSYG" gene complement(21476846..21478360) /locus_tag="TCM_014318" /note="dbxref CacaoGD:Thecc1EG014318" mRNA complement(join(21476846..21477511,21478128..21478360)) /locus_tag="TCM_014318" /product="COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014311t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008129001" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(21477032..21477412) /locus_tag="TCM_014318" /note="paralog of Thecc1EG014311t1" /codon_start=1 /product="COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family, putative" /protein_id="EOY22124.1" /db_xref="Phytozome:GSVIVT01008129001" /db_xref="TAIR:AT5G15630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTE0" /translation="MVGAQATNQGDCFKFMGKIPHISERSLAIVDLLLGVPKNQQLSN YCKGGLLGSWQQDQATPISSFQVSVGHSGTSRKIVKVPKDFYFLGPGVGYACNAAMAV PSSIFFSSDGQQKTRAMSLVLAIL" mobile_element 21477926..21479635 /note="source:CACAO_M_E22845_F60_scaffold_3 1 1710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21482727..21485303 /note="source:CACAO_M_E52239_F256_scaffold_7 19870 22439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21485546..21492097) /note="source:INTACT95_F143_scaffold_9-int 10288 16810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21486632..21495398 /note="source:CACAO_M_E43672_F60_scaffold_5 3493 12219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21511258..21513992 /note="source:CACAO_M_S_E32410_F231_scaffold_3 1 2735" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21514931..21515771) /locus_tag="TCM_014321" /note="dbxref CacaoGD:Thecc1EG014321" mRNA complement(21514931..21515771) /locus_tag="TCM_014321" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(21515392..21515661) /locus_tag="TCM_014321" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22125.1" /translation="MVFGKTIPIKGKRRSREFGDEKFGRIPTLVNSVEDEPVPDFGLK EREEIFQREEAWRFFTANAKLSRFKVKKKRSVFRANPEDLTQAHS" mobile_element complement(21517816..21518242) /note="source:CACAO_M_E58324_F9_scaffold_9 9769 10206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21518243..21521195) /note="source:CACAO_M_S_E122136_F76_scaffold_10 1327 4277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21521196..21523379 /note="source:CACAO_M_E52239_F256_scaffold_7 20248 22445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21533321..21533374 /note="source:CACAO_M_E5899_F5_scaffold_2 20734 20781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21535672..21537406 /note="source:CACAO_on_E565_scaffold_5 4197 5929" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21537965..21538048 /note="source:CACAO_M_E12297_F14_scaffold_3 1 83" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21541205..21542660) /note="source:CACAO_Mutator_E1149_scaffold_5 444 1910" /mobile_element_type="transposon:TIR/Mutator" mobile_element 21541601..21542748 /note="source:INTACT407F_F356_scaffold_4-int 3844 5004" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21542749..21545067) /note="source:CACAO_M_E33933_F9_scaffold_4 22109 24431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21545068..21546147 /note="source:CACAO_M_S_E88091_F86_scaffold_7 6500 7578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21546148..21546412) /note="source:CACAO_M_E22375_F15_scaffold_3 9815 10045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21546514..21546778 /note="source:CACAO_M_S_E38321_F15_scaffold_4 8170 8438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21546880..21549395 /note="source:CACAO_M_E12385_F15_scaffold_3 583 3098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21549396..21551210 /note="source:CACAO_M_S_E88091_F86_scaffold_7 1100 2916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21555865..21557026 /note="source:INTACT407F_F356_scaffold_4-int 14374 15552" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21558419..21560197 /note="source:CACAO_M_E22186_F143_scaffold_3 1 1771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21560198..21563109 /note="source:CACAO_M_E22854_F86_scaffold_3 1 2912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21563110..21564450) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 7158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21565400..21565643 /note="source:scaffold_8_CACTA_0859 16233 16468" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21566564..21566608 /note="source:INTACT407F_F356_scaffold_4-int 14349 14394" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21566891..21566946 /note="source:scaffold_9_CACTA_0931 589 645" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21568444..21570011) /note="source:INTACT444_F216_scaffold_4-int 1426 2884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21570997..21571373) /note="source:INTACT444_F216_scaffold_4-int 1 389" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21571906..21572934 /locus_tag="TCM_014326" /note="dbxref CacaoGD:Thecc1EG014326" mRNA 21571906..21572934 /locus_tag="TCM_014326" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 21572007..21572228 /locus_tag="TCM_014326" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22126.1" /translation="MLGQLGCRWVGNGNPNQLHANGSNGQVRANTALFGHVCQQKDSC SIDLTNHKLRSPFSRQTTDSDKCCLHFTH" gene complement(21573158..21575631) /locus_tag="TCM_014327" /note="dbxref CacaoGD:Thecc1EG014327" mRNA complement(join(21573158..21573470,21573602..21574014, 21574851..21574934,21575584..21575631)) /locus_tag="TCM_014327" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(join(21573369..21573470,21573602..21573673)) /locus_tag="TCM_014327" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22127.1" /translation="MCFVLVYYVLASFEIFEKNDQNTPVDIPSNDCLPGHRGGCHGLE GVPGRDIQVYPLC" mobile_element 21573392..21576375 /note="source:CACAO_M_E22856_F33_scaffold_3 1 2984" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21579287..21582341 /locus_tag="TCM_014329" /note="dbxref CacaoGD:Thecc1EG014329" mRNA join(21579287..21579927,21580951..21581201, 21581282..21581450,21581535..21582341) /locus_tag="TCM_014329" /product="Reversibly glycosylated polypeptide 3" /inference="alignment:exonerate- protein:2:ricco:30138.m003944" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011487t1" /inference="similar to AA sequence:ricco:30138.m003944" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8723t1" CDS join(21579601..21579927,21580951..21581201, 21581282..21581450,21581535..21581876) /locus_tag="TCM_014329" /note="dbxref ricco:30138.m003944; paralog of Thecc1EG011487t1" /codon_start=1 /product="Reversibly glycosylated polypeptide 3" /protein_id="EOY22128.1" /db_xref="TAIR:AT3G08900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22666" /translation="MAEPATISPATLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLII VQDGDPSKNIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIY TIDDDCFVAKDPTGKDINALEQHIKNLLSPSTPFFFNTLYDPYRAGADFVRGYPFSLR EGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRYVDAIMTIPKGTLFPMCGMNLAFNR ELIGAAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLGLGVKTGLPYIWHSKASNPFV NLKKEYKGIYWQEELIPFFQSVTLPKDCTTVQKCYIEISKQVKAKLGKVDEYFIKLAD AMVTWIEAWDELNPSGAKSAELPNGAAK" gene complement(21584951..21592736) /locus_tag="TCM_014330" /note="dbxref CacaoGD:Thecc1EG014330" mRNA complement(join(21584951..21585483,21586955..21587851, 21590938..21591074,21591744..21592736)) /locus_tag="TCM_014330" /product="LIGULELESS1 protein, putative" /inference="alignment:exonerate- protein:2:ricco:30138.m003942" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011483t1" /inference="similar to AA sequence:ricco:30138.m003942" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4631t1" CDS complement(join(21586971..21587851,21590938..21591074, 21591744..21592408)) /locus_tag="TCM_014330" /note="dbxref ricco:30138.m003942; paralog of Thecc1EG011483t1" /codon_start=1 /product="LIGULELESS1 protein, putative" /protein_id="EOY22129.1" /db_xref="TAIR:AT1G69170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLK6" /translation="MESWSYVSGEKGSVSDAAISPSDSYARNRSALMNWELKGPYSFS NNMLVSGQQAIENHAFGELGYGEFIGKQLPNDSIGDVLSSKVSRGRTVNPIMATLNAF SGEDESTSKFSSSVVDSNSRESSLIDLKLGRFPDHRDGRNSSFSIGAPMLSSSESSTP PKRVRAAGVNSHTTYCQVYGCNKDLTSAKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQ QCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQIGIHSGRSGRLLQQYNGFAGGRFHG TMLTTASFICQDILPSGLLHPDKYVTNEWGKRIKVEDGTDYSPLPAIPIMDGHFHLKS PYHPSSIEKLFPSFHGNEDNAATGGILSVNNARYPHGFGGPNSVSRPLFQDTSLGSED INVFDAASTIQGLSGISDSGCALSLLSSQSQNSSSHSSGIPMSRSLVIPGSHTHYNMS QVSGKLIGVSSQTSTTGVSNKFSSSGMNSTEGSHLGPLLISDGSEAANFDISGGIYQD SEFMNTKDRLSCEDGPTIDLLQLSSQLQRVEHQRQSMQVKQENEAFCCLRIT" mobile_element complement(21596082..21596587) /note="source:scaffold_8_CACTA_0858 14213 14728" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21598647..21599032 /note="source:CACAO_on_E203_scaffold_7 3 372" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21599140..21599354 /note="source:CACAO_on_E203_scaffold_7 5657 5871" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(21608327..21609495) /locus_tag="TCM_014331" /note="dbxref CacaoGD:Thecc1EG014331" mRNA complement(join(21608327..21608885,21609358..21609495)) /locus_tag="TCM_014331" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(21608534..21608788) /locus_tag="TCM_014331" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22130.1" /translation="MIVRQLCLAKLLNIFASKTRPRIMSLKKKLNVFSQDGKTIVEYL QYMKGITDERALAQALIATDDLVIFIFKWLGGRLKGNLNY" mobile_element complement(21611759..21613215) /note="source:CACAO_M_S_E85396_F7_scaffold_7 1523 2980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21614035..21622576) /note="source:INTACT777_F7_scaffold_9-int 1 8579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21624977..21625031) /note="source:CACAO_M_E49145_F369_scaffold_6 1227 1281" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21625030..21627515) /locus_tag="TCM_014333" /note="dbxref CacaoGD:Thecc1EG014333" mRNA complement(join(21625030..21625987,21626531..21626657, 21627234..21627515)) /locus_tag="TCM_014333" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(join(21625771..21625987,21626531..21626657, 21627234..21627405)) /locus_tag="TCM_014333" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22131.1" /translation="MLIAFEMLSRLKINFGKTSLFLVNGTRERWEELARNLNCKAGSL PSNYLEISLGANSGNKPSETFYPRLFTLSRSKEAMVRCIRKVVEKVKFRRLNLEEWVK ALERGMTVTETTWWESPRVDMETMQDKRAMMIRKNENGQPSTKDFLKFNTDGSAKEKF EYGKCGKSVER" mobile_element 21639243..21639953 /note="source:CACAO_M_E48538_F49_scaffold_6 12211 12895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21640122..21640353 /note="source:CACAO_M_E56674_F14_scaffold_8 165 395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21640354..21643470 /note="source:CACAO_M_E22859_F42_scaffold_3 1 3117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21647796..21650438) /note="source:CACAO_M_E36740_F369_scaffold_5 1 2631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21652332..21652434) /note="source:CACAO_M_E48538_F49_scaffold_6 12145 12251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21652587..21652717) /note="source:CACAO_M_E48538_F49_scaffold_6 11998 12126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21654169..21654445 /note="source:INTACT180_F13_scaffold_3-int 3164 3405" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21654373..21654731) /note="source:CACAO_M_E52576_F245_scaffold_7 2229 2576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21654720..21656627 /note="source:INTACT537_F22_scaffold_2-int 11923 13175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21660098..21660224 /note="source:CACAO_M_E12537_F13_scaffold_3 9246 9376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21660323..21660422 /note="source:CACAO_M_E36038_F90_scaffold_5 369 464" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21661406..21664495 /note="source:CACAO_M_S_E32427_F42_scaffold_3 1 3090" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21664558..21669456) /note="source:INTACT707_F2_scaffold_1-int 1 4894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21670267..21674046) /note="source:CACAO_M_E4368_F316_scaffold_2 1725 5465" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21675554..21675785) /note="source:CACAO_M_E57407_F76_scaffold_9 1341 1570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21675578..21676731) /note="source:CACAO_M_S_E119872_F88_scaffold_10 157 1412" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21676031..21676928 /note="source:CACAO_M_E11925_F316_scaffold_2 7058 7958" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21679484..21681553 /note="source:scaffold_6_CACTA_0709 4049 6135" /mobile_element_type="transposon:TIR/CACTA" gene 21685808..21703039 /locus_tag="TCM_014337" /note="dbxref CacaoGD:Thecc1EG014337" mRNA join(21685808..21686371,21691181..21691259, 21691566..21691627,21691742..21691841,21693380..21693421, 21693506..21693547,21693912..21694048,21694161..21694212, 21700089..21700150,21700265..21700364,21701910..21701951, 21702036..21702077,21702385..21702578,21702691..21703039) /locus_tag="TCM_014337" /product="K-box region and MADS-box transcription factor family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036551001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018979t1" /inference="similar to AA sequence:Phytozome:GSVIVT01036551001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8625t2" CDS join(21686187..21686371,21691181..21691259, 21691566..21691627,21691742..21691841,21693380..21693421, 21693506..21693547,21693912..21694048,21694161..21694212, 21700089..21700150,21700265..21700364,21701910..21701951, 21702036..21702077,21702385..21702578,21702691..21702775) /locus_tag="TCM_014337" /note="paralog of Thecc1EG018979t1" /codon_start=1 /product="K-box region and MADS-box transcription factor family protein" /protein_id="EOY22132.1" /db_xref="Phytozome:GSVIVT01036551001" /db_xref="TAIR:AT3G02310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P29382" /translation="MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVA LIVFSNRGKLYEFCSSSSMMKTLEKYQKCSYSTVDTSRSASETQSSYQEYLKLKARVE VLQRSQRNLLGEDLGPLNTKELEQLENQLETSLKQIRSTKSQAMLDQLGDLQNREQML VETNKSLRRKLEELSAQPHLRLAWETGGQNIPYNRLPAQSEGFFQLLGGSSSLQIGYN PVVSDEMNVAAQNQNSSYQECLKLKARVEVLQRSQRNLLGEDLGPLNTKELEQLENQL ETSLKQIRSTKSQAMLDQLGDLQNREQMLVETNKSLRRKYSASLLSTVLILVQILFHL LEELSAQPPFRLAWETGGQNIPYNRLPAQSEGFFQLLGGSSSFRIGYNPVVSDEMNVA AQNQNVCGYFPGWML" mobile_element complement(21686458..21686499) /note="source:CACAO_M_E58819_F24_scaffold_9 15352 15393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21694525..21694622 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3180 3252" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21694535..21694608) /note="source:CACAO_M_E5899_F5_scaffold_2 20733 20797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21697642..21698617 /note="source:CACAO_M_E33933_F9_scaffold_4 23586 24546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21697645..21698508) /note="source:CACAO_M_S_E51565_F2_scaffold_4 3586 4433" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21698800..21698972 /note="source:CACAO_M_E33933_F9_scaffold_4 1037 1209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21706026..21706504) /note="source:CACAO_M_S_E51565_F2_scaffold_4 10429 10908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21706497..21708330) /note="source:CACAO_M_S_E89272_F5_scaffold_8 16693 18546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21707345..21708463 /note="source:CACAO_M_S_E101805_F5_scaffold_9 769 1912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21708331..21709047) /note="source:CACAO_M_E1841_F5_scaffold_1 14436 15161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21709202..21709374 /note="source:INTACT146F_F14_scaffold_2-int 13179 13515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21709623..21709794) /note="source:CACAO_Mariner_E176_scaffold_6 8692 8864" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(21709900..21711108) /note="source:INTACT146F_F14_scaffold_2-int 3174 4377" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21711028..21711321 /note="source:CACAO_M_S_E101805_F5_scaffold_9 4453 4706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21711108..21716375) /note="source:INTACT1587F_F5_scaffold_9-int 3076 8349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21714376..21718829) /note="source:CACAO_Mariner_E229_scaffold_9 1266 5725" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 21718501..21718873 /note="source:CACAO_M_E33933_F9_scaffold_4 17402 17771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21718887..21721797 /note="source:CACAO_M_E22866_F86_scaffold_3 1 2911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21721801..21722376) /note="source:CACAO_M_S_E89272_F5_scaffold_8 17345 17920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21726666..21726865 /note="source:CACAO_M_S_E31635_F14_scaffold_3 17348 17540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21726835..21728328 /note="source:CACAO_M_S_E145698_F277_scaffold_11 3343 4835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21728322..21729094 /note="source:CACAO_M_E48452_F5_scaffold_6 8828 9583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21730144..21730500) /note="source:CACAO_M_E11415_F328_scaffold_2 9264 9632" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21740373..21744157 /locus_tag="TCM_014341" /note="dbxref CacaoGD:Thecc1EG014341" mRNA join(21740373..21740545,21742019..21742089, 21743238..21744157) /locus_tag="TCM_014341" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(21740428..21740545,21742019..21742089, 21743238..21743258) /locus_tag="TCM_014341" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22133.1" /translation="MVSFITCLVQEMLGLNGRPKRLPCWDYLSFFSLLILDIKGLVRR KRAQERLLTLLRLGFALDRCRVIDG" mobile_element complement(21744487..21744674) /note="source:scaffold_6_CACTA_0710 15828 16005" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21745032..21745828) /note="source:scaffold_6_CACTA_0710 3553 4290" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21745834..21746550) /note="source:scaffold_6_CACTA_0710 1337 2084" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21747942..21747993) /note="source:scaffold_6_CACTA_0710 1294 1344" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21748299..21748852) /note="source:CACAO_M_E49805_F5_scaffold_7 8927 9478" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21748856..21751660) /note="source:CACAO_M_E49368_F86_scaffold_7 108 2927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21751650..21751984 /note="source:scaffold_9_CACTA_0929 9702 10037" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21751686..21753368 /note="source:INTACT137_F12_scaffold_9-int 6839 8486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21752097..21753363) /note="source:CACAO_M_S_E31635_F14_scaffold_3 14796 16043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21753374..21754582) /note="source:scaffold_6_CACTA_0710 138 1344" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21754883..21755066) /note="source:scaffold_6_CACTA_0710 15828 16003" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21761510..21763989) /note="source:INTACT769_F87_scaffold_9-int 4859 7377" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21763990..21771611 /note="source:INTACT646_F284_scaffold_3-int 1 7622" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21774898..21776599 /locus_tag="TCM_014343" /note="dbxref CacaoGD:Thecc1EG014343" mRNA 21774898..21776599 /locus_tag="TCM_014343" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010930t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is noncode_complete; similar to RNA sequence, EST 0.66 coverage" CDS 21775475..21775723 /locus_tag="TCM_014343" /note="paralog of Thecc1EG010930t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22134.1" /translation="MEGTNALGSIDALKLTLIPRLVIPPKVKVPDFEKYDSTKCLMAH VTMYCHKMAAYTYDDNLLIHCFQDSLTRSTFRWYNKLN" mobile_element 21788469..21788504 /note="source:INTACT599_F268_scaffold_9-int 8204 8233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21791884..21793379 /note="source:CACAO_M_S_E32444_F17_scaffold_3 1 1496" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21796215..21814183 /locus_tag="TCM_014345" /note="dbxref CacaoGD:Thecc1EG014345" mRNA join(21796215..21796625,21812364..21812442, 21812724..21812788,21812891..21812990,21813074..21813115, 21813477..21813518,21813620..21813717,21813911..21814173) /locus_tag="TCM_014345" /product="AGAMOUS-like 8 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m003939" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011475t1" /inference="similar to AA sequence:ricco:30138.m003939" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10687t00001; inference alignment:Newbler:10:TSA:cgbaB_g10687t00001" mRNA join(<21796290..21796625,21812364..21812442, 21812724..21812788,21812891..21812990,21813074..21813115, 21813484..21813518,21813620..21813732,21813911..21814183) /locus_tag="TCM_014345" /product="K-box region and MADS-box transcription factor family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30138.m003939" /inference="alignment:exonerate- protein:2:ricco:30174.m009079" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011475t1" /inference="similar to AA sequence:ricco:30138.m003939" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1836t4; inference alignment:Newbler:10:TSA:cgbaB_g10687t00001" mRNA join(<21796290..21796625,21812364..21812442, 21812724..21812788,21812891..21812990,21813074..21813115, 21813484..21813518,21813620..21813717,21813911..21814183) /locus_tag="TCM_014345" /product="K-box region and MADS-box transcription factor family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30138.m003939" /inference="alignment:exonerate- protein:2:ricco:30174.m009079" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011475t1" /inference="similar to AA sequence:ricco:30138.m003939" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1836t1; alternateUTRof:Thecc1EG014345t2; inference alignment:Newbler:10:TSA:cgbaB_g10687t00001" CDS join(<21796291..21796625,21812364..21812442, 21812724..21812788,21812891..21812990,21813074..21813115, 21813484..21813518,21813620..21813623) /locus_tag="TCM_014345" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m003939; paralog of Thecc1EG011475t1" /codon_start=1 /product="K-box region and MADS-box transcription factor family protein isoform 2" /protein_id="EOY22136.1" /db_xref="TAIR:AT5G60910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38876" /translation="LKIPRESEQEREQTLSPLSLPELTVSFLFLGCCQWSWWRPFARQ KGKDIIMGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKG KLFEYSTDSCMERILERYERYSYAERQLAGNEVDQNGSWTLEHAKLKARMEVLQRNQR HFMGEDLDNLSLRELQNLEQQLDSALKHVRSRKNQLMFESISELQKKHCKSRITCLQR R" CDS join(<21796291..21796625,21812364..21812442, 21812724..21812788,21812891..21812990,21813074..21813115, 21813484..21813518,21813620..21813623) /locus_tag="TCM_014345" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30138.m003939; paralog of Thecc1EG011475t1" /codon_start=1 /product="K-box region and MADS-box transcription factor family protein isoform 2" /protein_id="EOY22137.1" /db_xref="TAIR:AT5G60910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38876" /translation="LKIPRESEQEREQTLSPLSLPELTVSFLFLGCCQWSWWRPFARQ KGKDIIMGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKG KLFEYSTDSCMERILERYERYSYAERQLAGNEVDQNGSWTLEHAKLKARMEVLQRNQR HFMGEDLDNLSLRELQNLEQQLDSALKHVRSRKNQLMFESISELQKKHCKSRITCLQR R" CDS join(21796441..21796625,21812364..21812442, 21812724..21812788,21812891..21812990,21813074..21813115, 21813477..21813518,21813620..21813717,21813911..21814019) /locus_tag="TCM_014345" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003939; paralog of Thecc1EG011475t1" /codon_start=1 /product="AGAMOUS-like 8 isoform 1" /protein_id="EOY22135.1" /db_xref="TAIR:AT5G60910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38876" /translation="MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVA LIVFSTKGKLFEYSTDSCMERILERYERYSYAERQLAGNEVDQNGSWTLEHAKLKARM EVLQRNQRHFMGEDLDNLSLRELQNLEQQLDSALKHVRSRKNQLMFESISELQKKDKA LQEQNNMLAKKVKEKEQAVAQQAQWEQQNNCQDTSAILLPQPMSGTYEARSSGREEEG NPAQHRGANALLPPWMIRHLE" gene complement(21802341..21804448) /locus_tag="TCM_014347" /note="dbxref CacaoGD:Thecc1EG014347" mRNA complement(join(21802341..21803070,21804305..21804448)) /locus_tag="TCM_014347" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032378t1" /inference="similar to AA sequence:frave:gene16028" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(21802596..21802931) /locus_tag="TCM_014347" /note="dbxref frave:gene16028; paralog of Thecc1EG032378t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22138.1" /translation="MAAQECMWLKSLMGDIMCKIDYAVQIKCDNESAIKLASNLIFHE RTKHIEVRHHYIREKVLNQEIELKGVSTNDQVADIFTKAFEKPKFEFVRVVLGVIDCK HALRGSDKN" gene complement(21808481..21810482) /locus_tag="TCM_014348" /note="dbxref CacaoGD:Thecc1EG014348" mRNA complement(join(21808481..21808883,21809279..21809479, 21809740..21809830,21810084..21810482)) /locus_tag="TCM_014348" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s19570.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3857t1" CDS complement(join(21808747..21808883,21809279..21809479, 21809740..21809830,21810084..21810335)) /locus_tag="TCM_014348" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22139.1" /translation="MRMEAYLQGQDLWELIATTDAEIPVDTLENAELRRKWKIKCGKA LFALRTSISKEFIDHVRDSTLLKEVWETLERLFSKKEYSKAFAKQMTKNFDQDVALFS KGKHNKKNTTTEKWIIDSSCSNRATGNDSLLSELRQQNGNRVIVTVDNSTYPVMNEGV AKMNDDARTRGIKLNDVYHVPGSMMNVVIGCFSVMTCFETCSAMEMSVLMSWIGLVKK MGSERRNS" mobile_element 21815932..21815991 /note="source:scaffold_1_CACTA_0011 7455 7514" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21819707..21828572 /note="source:INTACT83_F5_scaffold_9-int 1 8907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21821284..21829796) /note="source:CACAO_M_E59541_F5_scaffold_9 1 8532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21832092..21833710) /note="source:INTACT39F_F22_scaffold_1-int 5808 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21833812..21835975) /note="source:INTACT39F_F22_scaffold_1-int 3567 5788" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21839679..21841332 /locus_tag="TCM_014352" /note="dbxref CacaoGD:Thecc1EG014352" mRNA join(21839679..21840321,21840434..21840513, 21840951..21841332) /locus_tag="TCM_014352" /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30138.m003938" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011473t1" /inference="similar to AA sequence:ricco:30138.m003938" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(21840000..21840321,21840434..21840513, 21840951..21841235) /locus_tag="TCM_014352" /note="dbxref ricco:30138.m003938; paralog of Thecc1EG011473t1" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative" /protein_id="EOY22140.1" /translation="MARSHSRSPKLSLSRSVARVRVHSPSLRRKPASNCIENDQELEF LGKGGADNLINSETGTEFGSGNKVMVVVDASVEAKGALEWALSHTIQSQDTIVLLHVA KPRKRESKRNRNPRVYELLHSMKNMCQMKRPGVLVEVATLEGKEKGPIIVGAAKQQQA SLLVLGQRKKSMIWRLMRRWAGKRGPAGVGDYCIQNASCMTIAVRKKSNELGGYLITT KRHKNFWLLA" mobile_element complement(21843488..21843574) /note="source:CACAO_M_E5899_F5_scaffold_2 22062 22138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21844898..21844961) /note="source:INTACT296_F13_scaffold_9-int 13185 13248" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21848630..21854528) /locus_tag="TCM_014353" /note="dbxref CacaoGD:Thecc1EG014353" mRNA complement(join(21848630..21849469,21849904..21850275, 21850919..21851109,21851778..21851952,21853934..21854220, 21854278..21854528)) /locus_tag="TCM_014353" /product="Endoplasmic reticulum-adenine nucleotide transporter 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05990.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0012s05990.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02499t00002" CDS complement(join(21849158..21849469,21849904..21850275, 21850919..21851109,21851778..21851952,21853934..21854200)) /locus_tag="TCM_014353" /codon_start=1 /product="Endoplasmic reticulum-adenine nucleotide transporter 1" /protein_id="EOY22141.1" /db_xref="Phytozome:POPTR_0012s05990.1" /db_xref="TAIR:AT5G17400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLK1" /translation="MEMGKNKSEKFSMDFVMAGMAAIVSKSTAAPIERVKLLLQNQGE MIKRGQLHQPYNGVGDCFKRVLRDEGLFSFWRGNQANVIRYFPTQFAFAFPSIELSLS NIQRTSKPVKRTSFCICLAFSHLSVVFHLSLHSHHFPPKGEDLIQGLLEKWSWRLGFT MEPEHQKEKENDGKKVWSCDTQEKVGAAMVKIVRGEKQKEDGVVSSGWCMLAFNFAFK GYFKSIFGHSKEKDGYMMWFAGNVASGSAAGATTSLFLYHLDYARTRLGTDAKGCSIN GQHKFNGLFDVYRKTLSSDGIVGLYRGFGASIMGITLYRGMYFGIYDTIKPIILVGPL EGNFLASFFLGWSITTVSGVCAYPFDTVRRRMMLTSGQSIKYRSSMHAFREIVHLEGF TALFRGVTANMLLGVAGAGVLAGYDQLHRLASRQGYSFESYQGALK" mobile_element complement(21852352..21852411) /note="source:CACAO_M_E5899_F5_scaffold_2 20739 20796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21857020..21860166 /note="source:CACAO_M_E22875_F15_scaffold_3 1 3104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21862824..21870430) /note="source:scaffold_2_CACTA_0248 1006 8438" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21870506..21871071) /note="source:scaffold_2_CACTA_0248 489 1040" /mobile_element_type="transposon:TIR/CACTA" gene 21875336..21879756 /locus_tag="TCM_014355" /note="dbxref CacaoGD:Thecc1EG014355" mRNA join(21875336..21875974,21878153..21879756) /locus_tag="TCM_014355" /product="Galacturonosyltransferase 11" /inference="alignment:exonerate-protein:2:frave:gene26124" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007958t1" /inference="similar to AA sequence:ricco:30138.m003935" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc98t2" CDS join(21875822..21875974,21878153..21879607) /locus_tag="TCM_014355" /note="dbxref ricco:30138.m003935; paralog of Thecc1EG007958t1" /codon_start=1 /product="Galacturonosyltransferase 11" /protein_id="EOY22142.1" /db_xref="TAIR:AT1G18580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949Q1" /translation="MRRRAADYRRPVRRRFSHWICALLGLFVLAVLVLFIVHHNQHED RVEQPVNEEDSRMEQVVHENLNFTEEILSATSYSRQLAEQMTLAKAYVVIAKEHNNLH LSWELSSKIRSCQLLLSNAAMRGQAITLEEAEPIISSLSSLIYKAQDAHYDIATTIVT MKSHIQALEERANAATVQSTVFGQLVAEAFPKSLHCLIVKLSADWLRRPSLKDLANEQ RNSPRLVDNNLYHFCIFSDNVLATSAVVNSTISNADHPKQIVFHIVTNGVSYGAMQAW FLSNDFKGSTVEVQNIEEFSWLNASYAPIIKQLLDVDSRAYYFGENQDLKVESKLRNP KYISLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLES FHRYYKYLNFSNPVISSKFDPQACGWAFGMNVLDLIAWRKANVTARYHHWQEQNADRT LWKLGTLPAGLLAFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVVHFNGNMKPWLK LAIGRYKPLWERYINLSHPYLQDCVTS" gene 21881364..21882983 /locus_tag="TCM_014356" /note="dbxref CacaoGD:Thecc1EG014356" mRNA 21881364..21882983 /locus_tag="TCM_014356" /product="Flavonol 4'-sulfotransferase, putative" /inference="alignment:exonerate- protein:2:ricco:29851.m002492" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014359t1" /inference="similar to AA sequence:ricco:29851.m002492" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4628t1" CDS 21881580..21882644 /locus_tag="TCM_014356" /note="dbxref ricco:29851.m002492; paralog of Thecc1EG014359t1" /codon_start=1 /product="Flavonol 4'-sulfotransferase, putative" /protein_id="EOY22143.1" /db_xref="TAIR:AT1G18590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RZH0" /translation="MAAYLLSPKLGNPSTQNKQEDANLSSESGAIEMAYYKKYREILP TLPVGKAWMIAEHLVQYQGFWLSPNLALKAVIWIQDEFKVQPTDIFLASFPKTGTTWL KALIFATINRTHCDFSTHPLLTRSPHECFPFLEAYVHESHETISGLDALPPPRLLATH FPHTLLPNSMITSGCKFIYICRDPKDVLVSTWLFSNKLRPKELPPLSLQEAFELFCQG ISHFGPYWDHVLGYWKWSLENPEKILFLKYEDLKKDPSAVVKRLAEFLGVHFSLEEEG KGVAQEITRLCSFESLSNLEVNKTKTYKFKSDLVLYNNIFFRKGQTGDSKNHLTNEMI QHLDKTTQEKLAGSGLTFVS" gene complement(21885145..21888046) /locus_tag="TCM_014357" /note="dbxref CacaoGD:Thecc1EG014357" mRNA complement(join(21885145..21885169,21886618..21886692, 21886930..21887021,21887931..21888046)) /locus_tag="TCM_014357" /product="Uncharacterized protein" /note="quality class is strong-expresste, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc6290t1" mobile_element 21885940..21886618 /note="source:CACAO_M_E5899_F5_scaffold_2 20511 20961" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(21886639..21886692,21886930..21887021, 21887931..21887985)) /locus_tag="TCM_014357" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22144.1" /translation="MITQYSTMENKNKSMGKLARCFRERERERKTLYNSLRILEEESN YKASKVPTKLHRPIWTIRGSWN" mobile_element 21887035..21890060 /note="source:CACAO_M_E22877_F318_scaffold_3 1 3026" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21889983..21890083) /note="source:INTACT146F_F14_scaffold_2-int 3154 3250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21890048..21890915 /note="source:scaffold_4_CACTA_0490 3751 4620" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21891842..21893784) /note="source:CACAO_PIF_E465_scaffold_115 3160 5091" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(21893848..21895095) /note="source:CACAO_PIF_E465_scaffold_115 1910 3160" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(21897307..21897368) /note="source:CACAO_M_E5892_F98_scaffold_2 1939 2001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21899990..21900640) /note="source:scaffold_2_CACTA_0239 8729 9348" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21900725..21904005) /note="source:scaffold_2_CACTA_0239 4608 7886" /mobile_element_type="transposon:TIR/CACTA" gene complement(21904286..21908011) /locus_tag="TCM_014361" /note="dbxref CacaoGD:Thecc1EG014361" mRNA complement(join(21904286..21905031,21905396..21905482, 21905975..21906208,21907348..21908011)) /locus_tag="TCM_014361" /product="N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30138.m003925" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033762t1" /inference="similar to AA sequence:ricco:30138.m003925" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09962t00001" CDS complement(join(21904552..21905031,21905396..21905482, 21905975..21906208,21907348..21907509)) /locus_tag="TCM_014361" /note="dbxref ricco:30138.m003925; paralog of Thecc1EG033762t1" /codon_start=1 /product="N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein" /protein_id="EOY22145.1" /db_xref="TAIR:AT5G08100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P50287" /translation="MGWAIALHGGAGDIPLSLPPDRRLPREAGLRHCLDVGIAALKAH KHPLDVVELVVRELENHPHFNAGKGSVLTTSGTVEMEACIMDGKTKKCGAVSGLSTVV NAISLARKVMDKTPHIYLAFDGAEAFAREQGLETVDPSYFITPENIERLKQAQEANRV QIDYTQPIQKEVKKDDASVDGDSQIGTVGCVAVDNEGNLASATSTGGLVNKMVGRIGD TPIIGAGTYANHLCAVSATGKGEAIIRGTVARDVAAVMEFKGVSLKEAAAYVVEQVPP GNVGLVAVSSTGEVTMPFNTTGMFRACATEDGHSEIAIWDSPSK" mobile_element 21909022..21909070 /note="source:CACAO_M_S_E14849_F156_scaffold_2 711 759" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21909217..21919851) /locus_tag="TCM_014362" /note="dbxref CacaoGD:Thecc1EG014362" mRNA complement(join(21909217..21909823,21909902..21909964, 21910044..21910139,21910628..21910751,21910946..21911055, 21911617..21911784,21912220..21912375,21912989..21913105, 21913191..21913370,21913469..21913628,21913713..21913849, 21914377..21914452,21914559..21914666,21914776..21914834, 21914926..21915027,21915455..21915522,21915601..21915695, 21915866..21915945,21916056..21916187,21916270..21916419, 21916499..21916621,21916859..21916927,21917354..21917512, 21918188..21918285,21918392..21918503,21918856..21919530, 21919621..21919851)) /locus_tag="TCM_014362" /product="Nucleic acid binding,ATP-dependent helicases,ATP binding,helicases,ATP-dependent helicases isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m003924" /inference="similar to AA sequence:ricco:30138.m003924" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4681t5" mRNA complement(join(21909276..21909823,21909902..21909964, 21910044..21910139,21910628..21910751,21910946..21911055, 21911617..21911784,21912220..21912375,21912989..21913105, 21913191..21913370,21913469..21913628,21913713..21913849, 21914377..21914452,21914599..21914666,21914776..21914834, 21914926..21915027,21915455..21915522,21915601..21915695, 21915866..21915945,21916056..21916187,21916270..21916621, 21916859..21916927,21917354..21917512,21918188..21918285, 21918392..21918503,21918856..21919300)) /locus_tag="TCM_014362" /product="Nucleic acid binding,ATP-dependent helicases,ATP binding,helicases,ATP-dependent helicases isoform 2" /inference="alignment:exonerate- protein:2:ricco:30138.m003924" /inference="similar to AA sequence:Phytozome:POPTR_0012s06260.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4681t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4681t5; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc731t3" CDS complement(join(21909761..21909823,21909902..21909964, 21910044..21910139,21910628..21910751,21910946..21911055, 21911617..21911784,21912220..21912375,21912989..21913105, 21913191..21913370,21913469..21913628,21913713..21913849, 21914377..21914452,21914559..21914666,21914776..21914834, 21914926..21915027,21915455..21915522,21915601..21915695, 21915866..21915945,21916056..21916187,21916270..21916419, 21916499..21916621,21916859..21916927,21917354..21917512, 21918188..21918285,21918392..21918503,21918856..21919530, 21919621..21919767)) /locus_tag="TCM_014362" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003924" /codon_start=1 /product="Nucleic acid binding,ATP-dependent helicases,ATP binding,helicases,ATP-dependent helicases isoform 1" /protein_id="EOY22146.1" /db_xref="TAIR:AT5G08110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K9K8" /translation="MTEIQVRTLSNESTVITTSPEKTINDLKLLLKLSFPPASSSPNF HLFFKGTKLNLQSKVSSLSIQSGEFFVLIPFTKKDKPRIEKPSFSNNASTATSFADST YSDMMQEFSSLRDESGNFGEDNSNNNNVYFKSKRKEGVTIDRDEKKEGRAYDFLWNVL RSSDGDLFEKKNCDKFVEVLRSVNCLSSPYSGKCMLLSEAKIRSRDEQASCLCPVWLK KIVEAFAFLSILSAFLQLRTERMTSACLKEVLERLRKFGLGVCMEDIECLSVLCPKVV CFVNNDMEPKNFGDALVITLTSTKEGDKVDNKLGAGKSRMSLSKIFSIMKKWESSFKT SLWETIKLLMSKQKYENLTSFSLEDLLIFWKEGDKVSERNETKRARRSWSSASNSHSV KRRCHDTSQLLPAEMVEHLRKSIGLDRQMVHVENIGARKASYVEIPKELSDNTKSALQ SIGINKLYSHQAESIMASLSGKNVVVATMTSSGKSVCYNLPVLEALSHNLSSCALYLF PTKALAQDQLRALLAIINGFDCSINIGVYDGDTSQKERTWLRDNARLLITNPDMLHMS ILPLHRQFSRILSNLSFVVVDEAHTYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS TATSANPREHCMELANLSTLELIENDGSPSSEKLFVLWNPALCLRTELDKSDHDIDAR NASDKSLSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLCYTREILEETAPHLVNS ISAYRAGYVAEDRRKIESDFFGGKLCGIAATNALELGIDVGHIDVTLHLGFPGSIASL WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKFPEKLFRSPIECCHIDTQNQQVLEQHL VCAALEHPLSLLYDEKYFGSGLNSAITALKSRGYLISDHSSDPLAKIWSYIGHEKMPS RSISIRAIEAERYVVIDTQLNETLEEIEESRAFFQVYEGAVYMHQGRTYLVKDLDLSR KIAYCEKAALDYYTKTRDYTDIHIIGGKIAYPARISKDQLPRTTAQANTCSVTTTWFG FRRIRKGSNQILDTVDLWLPRYSYESQAVWISVPQSIKTVVEKKYSFCAGLHAACHAV LHVVPLYIRCNLSDLAPECPNPHDTRFFPERILLYDQHPGGTGVSKQIQPYFTELLCS ALELLTCCHCSSDSGCPNCVQNLACHEYNELINKDAAIMIIKGVLDAEKLYFEGHPDS TPSC" CDS complement(join(21909761..21909823,21909902..21909964, 21910044..21910139,21910628..21910751,21910946..21911055, 21911617..21911784,21912220..21912375,21912989..21913105, 21913191..21913370,21913469..21913537)) /locus_tag="TCM_014362" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nucleic acid binding,ATP-dependent helicases,ATP binding,helicases,ATP-dependent helicases isoform 2" /protein_id="EOY22147.1" /db_xref="Phytozome:POPTR_0012s06260.1" /db_xref="TAIR:AT5G08110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K9K8" /translation="MKFPEKLFRSPIECCHIDTQNQQVLEQHLVCAALEHPLSLLYDE KYFGSGLNSAITALKSRGYLISDHSSDPLAKIWSYIGHEKMPSRSISIRAIEAERYVV IDTQLNETLEEIEESRAFFQVYEGAVYMHQGRTYLVKDLDLSRKIAYCEKAALDYYTK TRDYTDIHIIGGKIAYPARISKDQLPRTTAQANTCSVTTTWFGFRRIRKGSNQILDTV DLWLPRYSYESQAVWISVPQSIKTVVEKKYSFCAGLHAACHAVLHVVPLYIRCNLSDL APECPNPHDTRFFPERILLYDQHPGGTGVSKQIQPYFTELLCSALELLTCCHCSSDSG CPNCVQNLACHEYNELINKDAAIMIIKGVLDAEKLYFEGHPDSTPSC" mobile_element 21911487..21911543 /note="source:CACAO_PIF_E119_scaffold_3 2174 2230" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(21920778..21921092) /note="source:CACAO_Mutator_E592_scaffold_3 17301 17735" /mobile_element_type="transposon:TIR/Mutator" mobile_element 21921286..21922071 /note="source:scaffold_8_CACTA_0867 422 1173" /mobile_element_type="transposon:TIR/CACTA" gene 21921836..21924483 /locus_tag="TCM_014363" /note="dbxref CacaoGD:Thecc1EG014363" mRNA join(21921836..21921998,21923019..21923096, 21923994..21924483) /locus_tag="TCM_014363" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(21921968..21921998,21923019..21923096, 21923994..21924415) /locus_tag="TCM_014363" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22148.1" /translation="MTRFRDGITEGTKKNVKSLLCVPRDQWGFNVGINIHCHKLTTFQ PNINVYFGAIAYSQDVGANYRRDVNRILVDIDVNISEQQQYVSLWKLEGWVEFGPQQR KKIMNCKQKSIARQGVKRNHTTNEEVHAQFAIVEAPSAAKVPDSPLVAPTVAPHTAPS TQARKPVAAFSTNYRL" mobile_element 21922504..21922939 /note="source:CACAO_Mutator_E592_scaffold_3 4740 5177" /mobile_element_type="transposon:TIR/Mutator" gene complement(21927648..21928451) /locus_tag="TCM_014364" /note="dbxref CacaoGD:Thecc1EG014364" mRNA complement(21927648..21928451) /locus_tag="TCM_014364" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012393t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(21927830..21928393) /locus_tag="TCM_014364" /note="paralog of Thecc1EG012393t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22149.1" /translation="MNQKLINYLFGLLGVLQLKSQIHNGDLVNRVEKGMGLGWITLSV NGREVNYFTYQHTIKEVFYAPTDDTQHIIHYELREINLMVEFDVEDELKILFGDHGVV GSIRANGMADDKVEYTINETEPHAIRATLVVRRRLNKNELEFAIINNTSLIIDMGVNL KDVINDCMGDKNAYAHDMSDKPIIMGY" gene 21928321..21934365 /locus_tag="TCM_014365" /note="dbxref CacaoGD:Thecc1EG014365" mRNA join(21928321..21928611,21933695..21934365) /locus_tag="TCM_014365" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(21928377..21928611,21933695..21933753) /locus_tag="TCM_014365" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22150.1" /translation="MSFWFMIRAMWGNKVFILLVWPFAQPSALDMATLIDVVHGFTQL MSFMEAMESCMTVRIKVLEEQTLEILQRQRDLEDVQEDAAIDFDDIRGFRLLG" mobile_element complement(21929139..21929187) /note="source:CACAO_Mutator_E592_scaffold_3 12943 12991" /mobile_element_type="transposon:TIR/Mutator" mobile_element 21929248..21931823 /note="source:CACAO_M_S_E18857_F335_scaffold_3 1 2609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21931728..21931838) /note="source:INTACT598_F89_scaffold_2-int 4449 4561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21934789..21938239 /note="source:CACAO_Mutator_E1018_scaffold_5 787 4277" /mobile_element_type="transposon:TIR/Mutator" gene 21934961..21942930 /locus_tag="TCM_014367" /note="dbxref CacaoGD:Thecc1EG014367" mRNA join(21934961..21935168,21937330..21937420, 21938990..21939154,21939272..21939445,21939536..21939624, 21939985..21940048,21940171..21940223,21940839..21940894, 21941761..21941949,21942745..21942930) /locus_tag="TCM_014367" /product="D-aminoacyl-tRNA deacylases, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03480.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011445t4" /inference="similar to AA sequence:Phytozome:POPTR_0015s03480.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1235t3_C2" CDS join(21937333..21937420,21938990..21939154, 21939272..21939445,21939536..21939624,21939985..21940048, 21940171..21940223,21940839..21940894,21941761..21941949, 21942745..21942838) /locus_tag="TCM_014367" /note="paralog of Thecc1EG011445t4" /codon_start=1 /product="D-aminoacyl-tRNA deacylases, putative" /protein_id="EOY22151.1" /db_xref="Phytozome:POPTR_0015s03480.1" /db_xref="TAIR:AT2G03800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZPQ3" /translation="MVVFVAKNEVFCSMHILIKIVQTSFVYTLFLVNNNHTRRSLHGW SLDRRTDGDTGGGKQRGPGLHRPSLFSLSHARLASWPLPLASYVNKEVRLIKLDKRLV VENHLDKRWEEATGETVDDVVFLSKHVASSNRPALTIHPIGTPHVREGEALVCRQKAR MGCTTEPADRAMVTLEATHHGPEINSPTMFVEIGSAEEYWKRQDAAQAIALLVWEGLG LGGRMAVGDWSRKDGVWAGHLLPGYSLLMEDPGEAKVPMNSVGVGGTRRETIKVAFET TELAFPGGEALAYLDQKSFKSWQRNAVEGFLAEQNIKNGKPGDVCPC" gene 21943261..21944206 /locus_tag="TCM_014368" /note="dbxref CacaoGD:Thecc1EG014368" mRNA 21943261..21944206 /locus_tag="TCM_014368" /product="Disease resistance response protein, putative" /inference="alignment:exonerate- protein:2:ricco:30138.m003923" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024981t1" /inference="similar to AA sequence:ricco:30138.m003923" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01993t00001" CDS 21943532..21944056 /locus_tag="TCM_014368" /note="dbxref ricco:30138.m003923; paralog of Thecc1EG024981t1" /codon_start=1 /product="Disease resistance response protein, putative" /protein_id="EOY22152.1" /db_xref="TAIR:AT2G21100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLI8" /translation="MAYASKFLLLIALVAAAYNTDALKQKVTRIQFYMHDIVGGPEPT AVRVASRSNFTGQDPIAATFGSIVMMDNPLTVTPNINSTLVGRAQGMYAMSSQQKEFS LLMTLTYAFTSGPYNGSTFSVLGRNPVMNEVREMPVVGGTGKFRLARGYCLARSYSMK EMDAVIGYNVTLLH" gene 21944819..21946123 /locus_tag="TCM_014369" /note="dbxref CacaoGD:Thecc1EG014369" mRNA join(21944819..21945033,21945282..21945380, 21945692..21945809,21946026..21946123) /locus_tag="TCM_014369" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03490.1" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3053t1" CDS join(21945007..21945033,21945282..21945380, 21945692..21945809,21946026..21946096) /locus_tag="TCM_014369" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22153.1" /translation="MGVTTQAGHLNYAEDAERDKQSSDEGRSNEDGKEEEIIPAIEGD GEGSSICLEVELASGSIRRRHYQVEETLNRGMVSVESKQGPLCAFPMFQILMVLVSCL NL" gene complement(21946683..21950296) /locus_tag="TCM_014370" /note="dbxref CacaoGD:Thecc1EG014370" mRNA complement(join(21946683..21947180,21947522..21947740, 21948307..21948651,21949637..21949720,21949929..21950296)) /locus_tag="TCM_014370" /product="Movement protein binding protein 2C, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008154001" /inference="similar to AA sequence:Phytozome:POPTR_0004s10680.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4658t1" mRNA complement(join(21946683..21947180,21947522..21947740, 21948307..21948654,21949637..21949720,21949929..21950296)) /locus_tag="TCM_014370" /product="Movement protein binding protein 2C, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008154001" /inference="similar to AA sequence:Phytozome:POPTR_0004s10680.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b013885t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4658t1" mRNA complement(join(21946707..21947180,21947522..21947740, 21948307..21948721)) /locus_tag="TCM_014370" /product="Movement protein binding protein 2C, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008154001" /inference="similar to AA sequence:Phytozome:POPTR_0004s10680.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc166t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4658t1" CDS complement(join(21946992..21947180,21947522..21947740, 21948307..21948651,21949637..21949720,21949929..21950147)) /locus_tag="TCM_014370" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Movement protein binding protein 2C, putative isoform 1" /protein_id="EOY22154.1" /db_xref="Phytozome:POPTR_0004s10680.1" /db_xref="TAIR:AT5G08120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LEZ4" /translation="MFEPQHFVDLQDNSGFGDPKSWLSGDNNINDNSSPTHHRTQSSL TNSTPSNGNVDRVLYNDLVEMIPLVQSLIERKANSSFTRRGSMIYTKTPSREYLSRKA TDMKGRNAAQSIPVRKKKDQGDRNGSNNQDGDSFSIFSSRALAAEKEDEELVALREQL EDMQRKLLEKDELLKAAEISKNQINDIQAELDKLKQHAAEKDSLVKSIQLQLSDAKIK LADKQAALEKTQWEAITSKQKVEKLQNDIDSVQGEFSSFMLLLNGLTKNNSTKHAEDY DVASYHFDHLPYIDDADDNEIQKMEEARQAYVAALAAAKEEQDEESLAAAASARLYLQ SFLFRSESLEESNISIS" CDS complement(join(21946992..21947180,21947522..21947740, 21948307..21948654,21949637..21949720,21949929..21950147)) /locus_tag="TCM_014370" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Movement protein binding protein 2C, putative isoform 2" /protein_id="EOY22155.1" /db_xref="Phytozome:POPTR_0004s10680.1" /db_xref="TAIR:AT5G08120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LEZ4" /translation="MFEPQHFVDLQDNSGFGDPKSWLSGDNNINDNSSPTHHRTQSSL TNSTPSNGNVDRVLYNDLVEMIPLVQSLIERKANSSFTRRGSMIYTKTPSREYLSRKK ATDMKGRNAAQSIPVRKKKDQGDRNGSNNQDGDSFSIFSSRALAAEKEDEELVALREQ LEDMQRKLLEKDELLKAAEISKNQINDIQAELDKLKQHAAEKDSLVKSIQLQLSDAKI KLADKQAALEKTQWEAITSKQKVEKLQNDIDSVQGEFSSFMLLLNGLTKNNSTKHAED YDVASYHFDHLPYIDDADDNEIQKMEEARQAYVAALAAAKEEQDEESLAAAASARLYL QSFLFRSESLEESNISIS" CDS complement(join(21946992..21947180,21947522..21947740, 21948307..21948642)) /locus_tag="TCM_014370" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Movement protein binding protein 2C, putative isoform 3" /protein_id="EOY22156.1" /db_xref="Phytozome:POPTR_0004s10680.1" /db_xref="TAIR:AT5G08120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LEZ4" /translation="MKGRNAAQSIPVRKKKDQGDRNGSNNQDGDSFSIFSSRALAAEK EDEELVALREQLEDMQRKLLEKDELLKAAEISKNQINDIQAELDKLKQHAAEKDSLVK SIQLQLSDAKIKLADKQAALEKTQWEAITSKQKVEKLQNDIDSVQGEFSSFMLLLNGL TKNNSTKHAEDYDVASYHFDHLPYIDDADDNEIQKMEEARQAYVAALAAAKEEQDEES LAAAASARLYLQSFLFRSESLEESNISIS" gene 21952759..21957913 /locus_tag="TCM_014371" /note="dbxref CacaoGD:Thecc1EG014371" mRNA join(21952759..21952764,21954050..21954116, 21954202..21954282,21954642..21954717,21955078..21955625, 21956800..21957221,21957309..21957406,21957507..21957913) /locus_tag="TCM_014371" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03510.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s03510.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3251t2" mRNA join(21954693..21954717,21955069..21955625, 21956800..21957221,21957309..21957406,21957507..21957804) /locus_tag="TCM_014371" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03510.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s03510.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2840t1; alternateUTRof:Thecc1EG014371t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3251t2" CDS join(21955080..21955625,21956800..21957221, 21957309..21957406,21957507..21957508) /locus_tag="TCM_014371" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22157.1" /db_xref="Phytozome:POPTR_0015s03510.2" /translation="MRAFKVKTNIEVNGQRGDGGVKDHGVNDFMAWKNPTQGASYPAS LGEAKRSKEANQLLNTSDTFLASDAPERVVFIQESDYQSVKDIFIDREVTSRSRLNYK DISSKFHTDVNGDGEEPRKTLRLTSSISNEIEQDFQNYVRKQHALNTLMKDGEEESDG RDDRLLCKSTEKMIPEMQHVKEVQIEDVVSLNPVEPSATESIEDNRYLNEVSSNSGAE SGSTINLSDSSLTTMSSLEEFLEGPECQQPYNTKRLSRTEDRTSRSLTGPSQSFVNQL AHGDCGSFALGPLSGPITYSGPIPCSGSISLRSTSSTASSNSFAFPILPSEWSGSPVR MVEADQRQPRKQQSWRTCFLC" CDS join(21955080..21955625,21956800..21957221, 21957309..21957406,21957507..21957508) /locus_tag="TCM_014371" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22158.1" /db_xref="Phytozome:POPTR_0015s03510.2" /translation="MRAFKVKTNIEVNGQRGDGGVKDHGVNDFMAWKNPTQGASYPAS LGEAKRSKEANQLLNTSDTFLASDAPERVVFIQESDYQSVKDIFIDREVTSRSRLNYK DISSKFHTDVNGDGEEPRKTLRLTSSISNEIEQDFQNYVRKQHALNTLMKDGEEESDG RDDRLLCKSTEKMIPEMQHVKEVQIEDVVSLNPVEPSATESIEDNRYLNEVSSNSGAE SGSTINLSDSSLTTMSSLEEFLEGPECQQPYNTKRLSRTEDRTSRSLTGPSQSFVNQL AHGDCGSFALGPLSGPITYSGPIPCSGSISLRSTSSTASSNSFAFPILPSEWSGSPVR MVEADQRQPRKQQSWRTCFLC" gene 21958431..21960045 /locus_tag="TCM_014373" /note="dbxref CacaoGD:Thecc1EG014373" mRNA join(21958431..21958588,21958786..21960045) /locus_tag="TCM_014373" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.61 coverage" CDS 21959175..21959420 /locus_tag="TCM_014373" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22159.1" /translation="MILPLAIKANMMHGQTRSLIGQMWPKLTFASRDHSWRLRPFHGR PFPLVFNRQTSKIFGRELTKISPTVLHPILVNSKRNI" gene complement(21960097..21963771) /locus_tag="TCM_014374" /note="dbxref CacaoGD:Thecc1EG014374" mRNA complement(join(21960097..21960713,21960817..21961053, 21961328..21961463,21962001..21963218,21963278..21963771)) /locus_tag="TCM_014374" /product="OBF binding protein 4, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008156001" /inference="similar to AA sequence:ricco:30138.m003918" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4662t1" CDS complement(join(21960483..21960713,21960817..21961053, 21961328..21961463,21962001..21962992)) /locus_tag="TCM_014374" /note="dbxref ricco:30138.m003918" /codon_start=1 /product="OBF binding protein 4, putative" /protein_id="EOY22160.1" /db_xref="TAIR:AT5G60850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2T1" /translation="MQDIHTIGGGRIFNGGGGGGGGGGDRRLRPHHHPNHQSLKCPRC DSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSKTKPSSET TTAAAAAAAAVPPQPQQQHRDERKANSLSSSESSSLTAANSNVAVTNNNNNNDNDNNN NNSSAGGTAEAVSAVTSHSNLINVSESKFYGNPNSLGFEPGLLEQGSDCGIFSEIGSF TSLITSSNNETLSFGFSTVLNGQGLEQGQWQQQQKMMNIGGEEISGGLLDQTVQVELS NLHSRSEGEGSGGFGPLDWQGSGDQGLFDLPNAVDQTYWSQSQWTDQDHPNLYLPQNS IALWLENVPRHHETRKTVTIIANGGVVDFDEEKRGEGKGWGNTMMWRLRWVVVVVVTG KLGMGGSRACAEVVSPVSPPYGHTSHVSVWVLESDVILTISQGSLILSRDFLGSEFAV PHWHIMFAHIKCGFRTLDSRVRCGGWGGGGNLGEGFDVVLLGILIFAMLGHLGVEHWC GPFLAETMIEAFMGLDLKFWVQV" mobile_element 21964418..21964447 /note="source:INTACT190_F166_scaffold_7-int 3742 3801" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21964448..21964494) /note="source:CACAO_M_E56826_F244_scaffold_8 2488 2534" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21966651..21967850) /note="source:CACAO_M_E56826_F244_scaffold_8 2148 3343" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21969476..21969846 /note="source:CACAO_M_S_E98445_F244_scaffold_8 1461 1831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21971202..21971516) /note="source:scaffold_5_CACTA_0614 2169 2451" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21974433..21974746 /note="source:CACAO_Again_on_E207_scaffold_9 1 314" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(21974577..21974842) /note="source:CACAO_Again_on_E210_scaffold_9 1512 1768" /mobile_element_type="transposon:TIR/hAT" mobile_element 21975144..21976073 /note="source:CACAO_Again_on_E207_scaffold_9 887 1826" /mobile_element_type="transposon:TIR/hAT" mobile_element 21980688..21982509 /note="source:INTACT700_F304_scaffold_7-int 14953 16786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21982620..21983303 /note="source:INTACT700_F304_scaffold_7-int 1843 2525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21982974..21983433 /note="source:CACAO_M_E52694_F25_scaffold_8 4389 4881" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21983636..21983813 /note="source:CACAO_M_E52694_F25_scaffold_8 4890 5093" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21983664..21983943 /note="source:scaffold_5_CACTA_0614 6137 6406" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21983696..21985638 /note="source:CACAO_M_E58877_F5_scaffold_9 8072 10025" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21984349..21985917) /locus_tag="TCM_014376" /note="dbxref CacaoGD:Thecc1EG014376" mRNA complement(21984349..21985917) /locus_tag="TCM_014376" /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H" /inference="alignment:exonerate- protein:2:frave:gene33815.16" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003737t1" /inference="similar to AA sequence:Phytozome:Glyma06g23600.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1760t4_C1" CDS complement(21985217..21985627) /locus_tag="TCM_014376" /note="paralog of Thecc1EG003737t1" /codon_start=1 /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H" /protein_id="EOY22161.1" /db_xref="Phytozome:Glyma06g23600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q2J0" /translation="MYGMEAVLPIEVEIPSLRVFKEVQLEEAEWVNARYEQLNLIEEK RLTALCHGQLYQKRMMRAYDKKAHSRQFREGELVLKRILPNQHDPRRKWTPNWEGPFV VKKAFSGGALILAEMDGREFSNPVNADAVKKYFA" mobile_element 21985739..21998124 /note="source:INTACT700_F304_scaffold_7-int 5141 17532" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21990414..21992639) /locus_tag="TCM_014378" /note="dbxref CacaoGD:Thecc1EG014378" mRNA complement(join(21990414..21991149,21992206..21992639)) /locus_tag="TCM_014378" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039198t1" /inference="similar to AA sequence:Phytozome:Glyma10g18830.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage" CDS complement(join(21990467..21991149,21992206..21992578)) /locus_tag="TCM_014378" /note="paralog of Thecc1EG039198t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22162.1" /db_xref="Phytozome:Glyma10g18830.1" /translation="MGDEHSERMDKIEKKQEEIMGQLSKILELISTDKGKKAVGSSGT PEDVQQIETNTDPVYPLGFTPPPARNASTPMPSVGQYPFFGMPIGPPLTYAQQRPIGG ASPSDPISVPDLDDPKEQEKLKFANHLVGPLYIEPIKPPFPRWYDTSAHCDYHYGIEG HSIENCTAFKHKVQGLIKAGILNFEKKSEQNVNNNPLPNHAGAGVNAIEREVYVKRNI REVETSMEKVFEALVKADMLEVWPECPNVNDSRDIQRLCCLYHKGCMGHSIQDCSSFR KEVQRMMDESKIEFYTEASESAVNMISKESTHPMKIKPLTIFYEPKGEFVEDKTHAKI IIEVPKPFPYKDNKAVP" gene 21996654..21998997 /locus_tag="TCM_014380" /note="dbxref CacaoGD:Thecc1EG014380" mRNA join(21996654..21997150,21997552..21997817, 21998005..21998997) /locus_tag="TCM_014380" /product="40S ribosomal protein S15" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s05740.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046274t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000754001" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8624t1" CDS join(21997666..21997817,21998005..21998641) /locus_tag="TCM_014380" /note="paralog of Thecc1EG046274t1" /codon_start=1 /product="40S ribosomal protein S15" /protein_id="EOY22163.1" /db_xref="Phytozome:GSVIVT01000754001" /db_xref="TAIR:AT5G09500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2XTB6" /translation="MIFLPHLELDGSPGGRITTHCTLLPCAPWVAEEMTLSSLERCRL EPLFALRLTLPSLASAAAPLSIPPLNSSFPCDSSFPCANSRSLASICRLYLPHSRGLG IFVLFTASSLARADAIADVAAPGIPKKRTFKKFSFRGVDLDALLDMSTDELVKLFPAR ARRRFQRGLKRKPMALIKKWRKAKREAPPGGLLFLLAGCFVALACRISDFSPPFPSSK CYSAPSLLYPVPGLWRGHAPLLCPWAPGGKFHYPARREFFASGR" mobile_element 21997770..21998228 /note="source:CACAO_M_E52694_F25_scaffold_8 4389 4880" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21998430..21998775 /note="source:CACAO_M_E58877_F5_scaffold_9 20466 20737" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22002869..22008387 /locus_tag="TCM_014381" /note="dbxref CacaoGD:Thecc1EG014381" mRNA join(22002869..22003599,22004224..22004283, 22007953..22008387) /locus_tag="TCM_014381" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400024327" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(22003298..22003599,22004224..22004283, 22007953..22008343) /locus_tag="TCM_014381" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22164.1" /db_xref="Phytozome:PGSC0003DMP400024327" /translation="MTVKWSPSVLDSKRPMSGCSDRSDRALLEFNNLGPNLHIAPIIQ IALLLSQLLVPICNSFASSSNSGEFMHTHSRPCKFLSINRYFSHHFLFSQSSTRGLRY IFPPLIKATELRQGSPERREDNDVPCAIPSLHEVQEAIFDIAKNSVVGPDGLSSFFYK HCWSIISKDLLEVVTGFFQGATLPKGMTSTTPVLLPKNSNPLNWSDIRPSSLCTVFNK ISTKILANRLSKLLLALISDNQNGFVSQKAHW" mobile_element complement(22008911..22011856) /note="source:INTACT657_F288_scaffold_5-int 1 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22012368..22017129 /note="source:scaffold_3_CACTA_0391 1 4762" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22017699..22018633 /note="source:CACAO_Again_on_E205_scaffold_9 1375 2334" /mobile_element_type="transposon:TIR/hAT" gene 22022514..22023183 /locus_tag="TCM_014382" /note="dbxref CacaoGD:Thecc1EG014382" mRNA 22022514..22023183 /locus_tag="TCM_014382" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018450t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS 22022768..22023097 /locus_tag="TCM_014382" /note="paralog of Thecc1EG018450t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22165.1" /translation="MSRGDSDSDISQSVSEGPTDFTAESRWCPELNNLEGDPFRVPTN WAPSDLGTKVKIRESPSDSETNESVDSNDINEGMRNFLLKGIEKYAKGRKKMRIFGDT YRGRYKV" mobile_element 22023036..22023253 /note="source:CACAO_M_E56826_F244_scaffold_8 3283 3503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22023354..22024176 /note="source:CACAO_M_E56826_F244_scaffold_8 3527 4349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22026599..22027014) /note="source:scaffold_4_CACTA_0503 3234 3646" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22027012..22027055 /note="source:INTACT410F_F357_scaffold_4-int 9986 10029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22027032..22027607) /note="source:CACAO_M_E5326_F22_scaffold_2 22091 22673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22028041..22028375) /note="source:scaffold_2_CACTA_0262 7090 7425" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22028376..22031331) /note="source:CACAO_M_E69760_F9_scaffold_9 6707 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22031234..22031345 /note="source:scaffold_5_CACTA_0611 5920 6031" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22031582..22032192) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5808 6404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22035461..22046113 /note="source:CACAO_M_E22886_F96_scaffold_3 1 10625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22046566..22049511 /note="source:CACAO_M_E22887_F143_scaffold_3 1 2946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22051080..22052583 /note="source:CACAO_M_E3326_F17_scaffold_1 1 1520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22058378..22062410 /note="source:CACAO_on_S_E176_scaffold_5 1 3653" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(22062405..22062898) /note="source:CACAO_M_E53079_F87_scaffold_8 2262 2755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22062895..22065602) /note="source:CACAO_M_E85113_F12_scaffold_10 3365 6069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22065337..22065642 /note="source:CACAO_M_E11415_F328_scaffold_2 21742 22045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22065595..22066503) /note="source:CACAO_on_E193_scaffold_6 3651 4910" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22066254..22070785 /note="source:CACAO_on_S_E176_scaffold_5 3329 8295" /mobile_element_type="transposon:TIR/Mutator" gene complement(22077653..22079699) /locus_tag="TCM_014388" /note="dbxref CacaoGD:Thecc1EG014388" mRNA complement(join(22077653..22077933,22078333..22079332, 22079575..22079699)) /locus_tag="TCM_014388" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m003916" /inference="similar to AA sequence:ricco:30138.m003916" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc990t1_C1" CDS complement(22078350..22079303) /locus_tag="TCM_014388" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003916" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22166.1" /translation="MLVLSMNSKRQRRPNVRLGEIGDVSAAFACRFSQKTKESLGHKR WKPDFLNPQGNELTTVVGFSKEESPDFLISGTGVSPRMSADLQQNRENKNPNSSKSGF DVVNADEIDMMKSSLNFGTITRKSRVMKRRGRSREGNNCVFGSAWTWSTKLSPEFSGE DRKEHGEKEFMGMRSNACEDYCPVNGFQDISDHETPATSKDACEYDVDEPGYDSWQQG NGDDYWKDACYEGNNVFFRSGDGWDQMRYTCNDVTSVGRWLEDLGFGRYAGIFEMHEV DEETLPLLTLDDLKEMGVFAVGHRRKLYAAIQQLRGGDVSS" mRNA complement(join(<22078399..22079104,22079575..>22079604)) /locus_tag="TCM_014388" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30138.m003916" /inference="similar to AA sequence:ricco:30138.m003916" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc990t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc990t1_C1" CDS complement(join(<22078401..22079104,22079575..>22079602)) /locus_tag="TCM_014388" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m003916" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY22167.1" /translation="SSATVTFIAESPDFLISGTGVSPRMSADLQQNRENKNPNSSKSG FDVVNADEIDMMKSSLNFGTITRKSRVMKRRGRSREGNNCVFGSAWTWSTKLSPEFSG EDRKEHGEKEFMGMRSNACEDYCPVNGFQDISDHETPATSKDACEYDVDEPGYDSWQQ GNGDDYWKDACYEGNNVFFRSGDGWDQMRYTCNDVTSVGRWLEDLGFGRYAGIFEMHE VDEETLPLLTLDDLKEMGVFAVGHRR" mobile_element 22088078..22088406 /note="source:scaffold_5_CACTA_0586 11452 11775" /mobile_element_type="transposon:TIR/CACTA" gene 22091456..22095438 /locus_tag="TCM_014389" /note="dbxref CacaoGD:Thecc1EG014389" mRNA join(22091456..22092101,22092451..22092551, 22093425..22093522,22093979..22094181,22094402..22094454, 22095033..22095438) /locus_tag="TCM_014389" /product="BSD domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m003915" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011442t1" /inference="similar to AA sequence:ricco:30138.m003915" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00405t00002" mRNA join(22091456..22092101,22092451..22092551, 22093425..22093522,22093979..22094740) /locus_tag="TCM_014389" /product="BSD domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30138.m003915" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011442t1" /inference="similar to AA sequence:ricco:30138.m003915" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b013902t1a2; inference alignment:Newbler:10:TSA:cgbaL_g00405t00002" CDS join(22091723..22092101,22092451..22092551, 22093425..22093522,22093979..22094181,22094402..22094454, 22095033..22095056) /locus_tag="TCM_014389" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003915; paralog of Thecc1EG011442t1" /codon_start=1 /product="BSD domain-containing protein, putative isoform 1" /protein_id="EOY22168.1" /db_xref="TAIR:AT1G26300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6Z343" /translation="MDIWNKARSFAEEAAKRSSELTKEAARRSSELSIGSAKLGDIVT EASKRSKGIAAEASKRADQIRVEAAKRADLIKSSLAEGIAPTQNTETQVEQEKELERF GIDEELRDFVKGITLSTFQDFPLPDDSPMSDVPTVSNIRQDLTEWQEKHANLVLSTVK EISKLRYELCPRVMRETKFWRIYFILVSSHIAPYEKRYMEDVKQSSAEQVTDEKVKDS SNVEMTSKPQAKETKEHGKTSTSSAEQDLDIFLLGDDSDEGPDDGDDGFDDDFDKMVD SSDEEKDKS" CDS join(22091723..22092101,22092451..22092551, 22093425..22093522,22093979..22094201) /locus_tag="TCM_014389" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m003915; paralog of Thecc1EG011442t1" /codon_start=1 /product="BSD domain-containing protein, putative isoform 2" /protein_id="EOY22169.1" /db_xref="TAIR:AT1G69030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6Z343" /translation="MDIWNKARSFAEEAAKRSSELTKEAARRSSELSIGSAKLGDIVT EASKRSKGIAAEASKRADQIRVEAAKRADLIKSSLAEGIAPTQNTETQVEQEKELERF GIDEELRDFVKGITLSTFQDFPLPDDSPMSDVPTVSNIRQDLTEWQEKHANLVLSTVK EISKLRYELCPRVMRETKFWRIYFILVSSHIAPYEKRYMEDVKQSSAEQVTDEKVKDS SNVEMTSKPQAKETKEHGKTSTSSAEQDLDIFLLGDDSDEGPGTKFLS" gene complement(22096020..22102882) /locus_tag="TCM_014390" /note="dbxref CacaoGD:Thecc1EG014390" mRNA complement(join(22096020..22096355,22100541..22100980, 22102667..22102882)) /locus_tag="TCM_014390" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" mobile_element complement(22096915..22096987) /note="source:scaffold_6_CACTA_0699 4166 4239" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(22100737..22100980,22102667..22102854)) /locus_tag="TCM_014390" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22170.1" /translation="MTGPNVSPTWRLSLAVVNQTWRRLRTEFLVYESMGFAIAVRFGM ALNHLPIHRQYIARISGRGIFPSCSNLLKRRRKEKKLIKKKRLKMMMNLNPIDNRSAF DSFYRQSVGCAVKTAFQCQNGHSTGTARCNNPNALLPPQIA" mobile_element 22102052..22102145 /note="source:scaffold_6_CACTA_0700 2609 2691" /mobile_element_type="transposon:TIR/CACTA" gene 22103292..22108452 /locus_tag="TCM_014391" /note="dbxref CacaoGD:Thecc1EG014391" mRNA join(22103292..22103847,22104427..22104494, 22104631..22104719,22104870..22105035,22105199..22105488, 22105581..22105785,22105877..22106034,22106457..22107423) /locus_tag="TCM_014391" /product="O-fucosyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30138.m003914" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019014t1" /inference="similar to AA sequence:ricco:30138.m003914" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4698t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4698t1" mRNA join(22103504..22103847,22104427..22104494, 22104631..22104719,22104870..22105035,22105199..22105488, 22105581..22105785,22105877..22106034,22106457..22106699, 22107319..22108452) /locus_tag="TCM_014391" /product="O-fucosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m003914" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019014t1" /inference="similar to AA sequence:ricco:30138.m003914" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4698t1" CDS join(22103544..22103847,22104427..22104494, 22104631..22104719,22104870..22105035,22105199..22105488, 22105581..22105785,22105877..22106034,22106457..22106699, 22107319..22107469) /locus_tag="TCM_014391" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003914; paralog of Thecc1EG019014t1" /codon_start=1 /product="O-fucosyltransferase family protein isoform 1" /protein_id="EOY22171.1" /db_xref="TAIR:AT5G15740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZR8" /translation="MCSVEGLGRKGGIRMGVMKAGGGGGGERVEKLKSSRMKLWMIRA TTSVLLWTCIVQLTALGETWGPRVLKGWPSCFSHQDSSVSVIEDRVPSVPARVLPPKR VYKNNGYLMVSCNGGLNQMRAAICDMVTIARYLNVTLIVPELDKTSFWADPSEFQDIF DVDHFITSLRDEVRILKELPPRLKRRVEMGLVHSMPPVSWSDISYYHQQILPLIQKYK VVHLNRTDARLANNGQPLDIQKLRCRVNFNALRFTSQIEELGKRVIKLLRQNGPFIVL HLRYEMDMLAFSGCTQGCNNEEVEELTRMRYAYPWWKEKIINSDLKRKDGLCPLTPEE TALTLKALDIDTSYQIYIAAGEIYGGERRMASLSAAYPKLVRKETLLEASDLRFFQNH SSQMAALDYLVSLESDIFIPTYDGNMAKVVEGHRRFLGFKRTILLDRRLLVELIDQYN GGSLNWDEFSAAVKETHESRKGQPTKRLVTPDRPKEEDYFYANPEECLQPSYGQLSST WDSMVSPYQRGYLSLLLDPLLRLANFGPFLKWIARLNFAFDIDNPTYEA" CDS join(22103544..22103847,22104427..22104494, 22104631..22104719,22104870..22105035,22105199..22105488, 22105581..22105785,22105877..22106034,22106457..22106703) /locus_tag="TCM_014391" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m003914; paralog of Thecc1EG019014t1" /codon_start=1 /product="O-fucosyltransferase family protein isoform 2" /protein_id="EOY22172.1" /db_xref="TAIR:AT5G15740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZR8" /translation="MCSVEGLGRKGGIRMGVMKAGGGGGGERVEKLKSSRMKLWMIRA TTSVLLWTCIVQLTALGETWGPRVLKGWPSCFSHQDSSVSVIEDRVPSVPARVLPPKR VYKNNGYLMVSCNGGLNQMRAAICDMVTIARYLNVTLIVPELDKTSFWADPSEFQDIF DVDHFITSLRDEVRILKELPPRLKRRVEMGLVHSMPPVSWSDISYYHQQILPLIQKYK VVHLNRTDARLANNGQPLDIQKLRCRVNFNALRFTSQIEELGKRVIKLLRQNGPFIVL HLRYEMDMLAFSGCTQGCNNEEVEELTRMRYAYPWWKEKIINSDLKRKDGLCPLTPEE TALTLKALDIDTSYQIYIAAGEIYGGERRMASLSAAYPKLVRKETLLEASDLRFFQNH SSQMAALDYLVSLESDIFIPTYDGNMAKVVEGHRRFLGFKRTILLDRRLLVELIDQYN GGSLNWDEFSAAVKETHESRKGQPTKRLVTPDRPKEEDYFYANPEECLQPSYGQLSST " gene complement(22108970..22117319) /locus_tag="TCM_014392" /note="dbxref CacaoGD:Thecc1EG014392" mRNA complement(join(22108970..22109480,22109626..22109755, 22110825..22111285,22111413..22111508,22111601..22111673, 22112116..22112227,22112407..22112543,22112660..22112762, 22114198..22114569,22116015..22116092,22116276..22116745, 22116942..22117319)) /locus_tag="TCM_014392" /product="Transcription factor BIM1, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03550.2" /inference="similar to AA sequence:ricco:30138.m003913" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4722t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc185t10; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc106t9_C2" mRNA complement(join(22108970..22109480,22109626..22109755, 22110825..22111285,22111413..22111508,22111601..22111670, 22112116..22112227,22112407..22112543,22112660..22112765, 22114198..22114569,22116015..22116092,22116276..22116745, 22116942..22117319)) /locus_tag="TCM_014392" /product="Transcription factor BIM1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03550.2" /inference="similar to AA sequence:ricco:30138.m003913" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4722t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc185t10; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc106t9_C2" mRNA complement(join(22109005..22109480,22109626..22109755, 22110825..22111285,22111413..22111508,22111601..22111710, 22112102..22112227,22112407..22112543,22112660..22112765, 22113849..22113951,22114205..22114569,22116015..22116092, 22116276..22116745,22116942..22117251)) /locus_tag="TCM_014392" /product="Transcription factor BIM1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03550.2" /inference="similar to AA sequence:ricco:30138.m003913" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc185t10" CDS complement(join(22109385..22109480,22109626..22109755, 22110825..22111285,22111413..22111508,22111601..22111710, 22112102..22112227,22112407..22112543,22112660..22112765, 22113849..22113951,22114205..22114569,22116015..22116092, 22116276..22116312)) /locus_tag="TCM_014392" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003913" /codon_start=1 /product="Transcription factor BIM1, putative isoform 1" /protein_id="EOY22173.1" /db_xref="TAIR:AT5G08130.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLH8" /translation="MELPQSRPFGAEGRKSTHDFLSLYSHPSVQQDPRPPAQGGYLKT HDFLQLERLGKTSAKEETPVEVATAEKPPPPAPPPSVEHILPGGIGTYSISHISYFNP RVPKAEGAIYNVAQGSNTERNDENSNCSSYAGSGFTLWEESAGKKGKTGKENAGETPV FGTAGIINPHAISTVKFVFHLICIRMQRSIAMISEAAGKVGQWATSSLERASQSSTNN HRNSFSSLSSSQPSSKQKSQSFMEMIKSAKGSAQDDDFEEDEDFVLKKESSTTTHSKG ELRVKVDGKSAPDQKANTPRSKHSATEQRRRSKINDRPVKLKSSLDAKIYPFFCRFQM LRDLIPHSDQKRDKASFLLEVIEYIQFLQEKVHKYEGTYQGWSHEPSKLMPWRNNHRP TENYADQSQAINGVSAPALVFSAKFDEKNITVAPTIPGSAHNPIESDMSTATTFRAID LSPGMMNKTMPFPVSLQPNFFASAQSTGAAAQLVPRLPSDVANCASQPQSIACHSGSF TTDGALPSEKLKEQELTIEGGTISISSVYSQGLLNTLTQALQTSGVDLSHASISVQIE LGKRSSSRPTASASTLKDREAPTANQGTTRSRVGCGEDSDQPLKKLKT" CDS complement(join(22109385..22109480,22109626..22109755, 22110825..22111285,22111413..22111508,22111601..22111673, 22112116..22112227,22112407..22112543,22112660..22112762, 22114198..22114569,22116015..22116092,22116276..22116312)) /locus_tag="TCM_014392" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30138.m003913" /codon_start=1 /product="Transcription factor BIM1, putative isoform 3" /protein_id="EOY22175.1" /db_xref="TAIR:AT5G08130.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLH8" /translation="MELPQSRPFGAEGRKSTHDFLSLYSHPSVQQDPRPPAQGGYLKT HDFLQLERLGKTSAKEETPVEVATAEKPPPPAPPPSVEHILPGGIGTYSISHISYFNP RVPKAEGAIYNVAQGSNTERNDENSNCSSYAGSGFTLWEESAGKKGKTGKENAGETPV VRAAGKVGQWATSSLERASQSSTNNHRNSFSSLSSSQPSSKQKSQSFMEMIKSAKGSA QDDDFEEDEDFVLKKESSTTTHSKGELRVKVDGKSAPDQKANTPRSKHSATEQRRRSK INDSRFQMLRDLIPHSDQKRDKASFLLEVIEYIQFLQEKVHKYEGTYQGWSHEPSKLM PWRNNHRPTENYADQSQAINGVSAPALVFSAKFDEKNITVAPTIPGSAHNPIESDMST ATTFRAIDLSPGMMNKTMPFPVSLQPNFFASAQSTGAAAQLVPRLPSDVANCASQPQS IACHSGSFTTDGALPSEKLKEQELTIEGGTISISSVYSQGLLNTLTQALQTSGVDLSH ASISVQIELGKRSSSRPTASASTLKDREAPTANQGTTRSRVGCGEDSDQPLKKLKT" CDS complement(join(22109385..22109480,22109626..22109755, 22110825..22111285,22111413..22111508,22111601..22111670, 22112116..22112227,22112407..22112543,22112660..22112765, 22114198..22114569,22116015..22116092,22116276..22116312)) /locus_tag="TCM_014392" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m003913" /codon_start=1 /product="Transcription factor BIM1, putative isoform 2" /protein_id="EOY22174.1" /db_xref="TAIR:AT5G08130.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLH8" /translation="MELPQSRPFGAEGRKSTHDFLSLYSHPSVQQDPRPPAQGGYLKT HDFLQLERLGKTSAKEETPVEVATAEKPPPPAPPPSVEHILPGGIGTYSISHISYFNP RVPKAEGAIYNVAQGSNTERNDENSNCSSYAGSGFTLWEESAGKKGKTGKENAGETPV VREAAGKVGQWATSSLERASQSSTNNHRNSFSSLSSSQPSSKQKSQSFMEMIKSAKGS AQDDDFEEDEDFVLKKESSTTTHSKGELRVKVDGKSAPDQKANTPRSKHSATEQRRRS KINDRFQMLRDLIPHSDQKRDKASFLLEVIEYIQFLQEKVHKYEGTYQGWSHEPSKLM PWRNNHRPTENYADQSQAINGVSAPALVFSAKFDEKNITVAPTIPGSAHNPIESDMST ATTFRAIDLSPGMMNKTMPFPVSLQPNFFASAQSTGAAAQLVPRLPSDVANCASQPQS IACHSGSFTTDGALPSEKLKEQELTIEGGTISISSVYSQGLLNTLTQALQTSGVDLSH ASISVQIELGKRSSSRPTASASTLKDREAPTANQGTTRSRVGCGEDSDQPLKKLKT" mobile_element 22118546..22119376 /note="source:CACAO_MITE53_scaffold_3 1 831" /mobile_element_type="transposon:TIR/MITE" mobile_element 22122583..22122602 /note="source:scaffold_2_CACTA_0256 2631 2683" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22122603..22122659 /note="source:INTACT415F_F22_scaffold_4-int 2182 2245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22122617..22122681) /note="source:CACAO_M_E52882_F369_scaffold_8 1379 1448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22129913..22130337) /note="source:CACAO_MITE53_scaffold_3 6 442" /mobile_element_type="transposon:TIR/MITE" mobile_element 22131780..22131820 /note="source:INTACT134F_F392_scaffold_2-int 4987 5027" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22136904..22137863 /note="source:INTACT135F_F90_scaffold_2-int 12875 14001" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22137989..22138048 /note="source:CACAO_M_E14113_F106_scaffold_3 13785 13846" /mobile_element_type="retrotransposon:LTR/Copia" gene 22140734..22144103 /locus_tag="TCM_014394" /note="dbxref CacaoGD:Thecc1EG014394" mRNA join(22140734..22140936,22141636..22144103) /locus_tag="TCM_014394" /product="Phosphoinositide 4-kinase gamma 7, gamma 7,ubdk gamma 7,pi4k gamma 7 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene26140" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011431t2" /inference="similar to AA sequence:ricco:30138.m003897" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04359t00001" mRNA join(22140911..22140966,22141636..22144088) /locus_tag="TCM_014394" /product="Phosphoinositide 4-kinase gamma 7, gamma 7,ubdk gamma 7,pi4k gamma 7 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene26140" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011431t2" /inference="similar to AA sequence:ricco:30138.m003897" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc587t3; alternateUTRof:Thecc1EG014394t1; inference alignment:Newbler:10:TSA:cgbaB_g04359t00001" CDS 22141882..22143783 /locus_tag="TCM_014394" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003897; paralog of Thecc1EG011431t2" /codon_start=1 /product="Phosphoinositide 4-kinase gamma 7, gamma 7,ubdk gamma 7,pi4k gamma 7 isoform 1" /protein_id="EOY22176.1" /db_xref="TAIR:AT2G03890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SI52" /translation="MASKLDSPVQTQVAVAVFNGICNGEYHGNTRARPSRTRRVFVQT ETGCVLGLELDRNDNAHTVKRRLQLALNVPTDESSLTYGDLTLKNDLSAIRNDSPLLL TRNAMHRSSSTPCLSPTGKTFQQGDQSGPIEILGCSNRFAGTTELVKDIIRAIKNGVD PIPVNSGLGGAYYFRNIKGENAAIVKPTDEEPFAPNNPKGFVGKALGQPGLKHSVRVG ETGFREVAAYLLDYGHFANVPPTVLVKVTHSVFNVNDGVNRNKHQKKKKVSKIASLQQ FIPHDFDASDHGTSSFPVDAIHRIGILDIRIFNTDRHAGNLLVRKLSGVEGFGQVELI PIDHGLCLPESLEDPYFEWIHWPQASIPFSADELEYIKNLDPVRDCDMLRAELPMIRE ACLRVLVLCSIFLQEAAAFGLCLAEIGEMMSREFHGQEEEPSELEVVCLEAKELTMEI DMSFFESDEGDNEFQFDMDCEAAEVNVAPKMSGLFAKLPFYYRSESFNEKNLLAQVDE NLEESEIQVDGGPISAAVACGHKDDWVYTASRLSLSLKKVNLGEKGFHYHGGKQKGKM IGYSSRMIRSANEHLPTSTSFVKFADMSEEEWNLFIEKFKELLYPAFAKRRSRTIVQR QRLGTSCQF" CDS 22141882..22143783 /locus_tag="TCM_014394" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m003897; paralog of Thecc1EG011431t2" /codon_start=1 /product="Phosphoinositide 4-kinase gamma 7, gamma 7,ubdk gamma 7,pi4k gamma 7 isoform 1" /protein_id="EOY22177.1" /db_xref="TAIR:AT2G03890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SI52" /translation="MASKLDSPVQTQVAVAVFNGICNGEYHGNTRARPSRTRRVFVQT ETGCVLGLELDRNDNAHTVKRRLQLALNVPTDESSLTYGDLTLKNDLSAIRNDSPLLL TRNAMHRSSSTPCLSPTGKTFQQGDQSGPIEILGCSNRFAGTTELVKDIIRAIKNGVD PIPVNSGLGGAYYFRNIKGENAAIVKPTDEEPFAPNNPKGFVGKALGQPGLKHSVRVG ETGFREVAAYLLDYGHFANVPPTVLVKVTHSVFNVNDGVNRNKHQKKKKVSKIASLQQ FIPHDFDASDHGTSSFPVDAIHRIGILDIRIFNTDRHAGNLLVRKLSGVEGFGQVELI PIDHGLCLPESLEDPYFEWIHWPQASIPFSADELEYIKNLDPVRDCDMLRAELPMIRE ACLRVLVLCSIFLQEAAAFGLCLAEIGEMMSREFHGQEEEPSELEVVCLEAKELTMEI DMSFFESDEGDNEFQFDMDCEAAEVNVAPKMSGLFAKLPFYYRSESFNEKNLLAQVDE NLEESEIQVDGGPISAAVACGHKDDWVYTASRLSLSLKKVNLGEKGFHYHGGKQKGKM IGYSSRMIRSANEHLPTSTSFVKFADMSEEEWNLFIEKFKELLYPAFAKRRSRTIVQR QRLGTSCQF" gene complement(22144458..22148537) /locus_tag="TCM_014395" /note="dbxref CacaoGD:Thecc1EG014395" mRNA complement(join(22144458..22145519,22146226..22147654, 22148134..22148537)) /locus_tag="TCM_014395" /product="RING/U-box protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m003912" /inference="similar to AA sequence:Phytozome:GSVIVT01008167001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04519t00001" mRNA complement(join(22145024..22145519,22146286..22147626)) /locus_tag="TCM_014395" /product="RING/U-box protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30138.m003912" /inference="similar to AA sequence:Phytozome:GSVIVT01008167001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1048t1_C1; inference alignment:Newbler:10:TSA:cgbaP2_g04519t00001" CDS complement(join(22145275..22145519,22146226..22147654, 22148134..22148499)) /locus_tag="TCM_014395" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RING/U-box protein, putative isoform 1" /protein_id="EOY22178.1" /db_xref="Phytozome:GSVIVT01008167001" /db_xref="TAIR:AT3G05670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIQ0" /translation="MAGDSTSDSPSPSPNKRLKITTPNSKSIIQDESSGHHLQQSRDD DDSDSDKCGICLSDGGRRAIRGKIDSCDHFFCFVCIMEWAKVESRCPMCKRRFTAIRR PPKEAVFTSERVVNIPQRDQVYHLCGNATSGPFDPYAEVKCSVCHGIADESLLLLCDL CDSAAHTYCVGLGATVPDGDWFCHDCALSRSEHEKTEVDTDTDNKMISGNSHVKLLAE ANVSIFKIVRGSNIPVFSGHNASVSSLPTYLPPPLVPKRERNAVDKVSGPIERSGNTM GNSTEPGARTLGLCRNVHSRIQALRENWHSLQSRSLSFSSSMVESGGGSRRKGTLALT SVSNYSSSEPQSSSSTSQQSTSQNGFVEPKVDLYDTDKAWKMMNIAKSMQKNCKRNSS LNQTSTKPPCLGSALKEAISSSGLHISQIQQIETRNEERTGKQMHYRYYYHETEKEKH KSPEMDKQKRMVMSIQSSERVVTSHSPRFSPSSSSTKFQIQNDDCHVNGVRPIVKNAQ NKCQESSSNANKDGGYSCSTSSAGSVLRGSTDSLDSNLEFGVSILDILERRTRLEKSC SKSKDRRDDNVKCEIQSLVKLNLKLLNQDKRLGVDAFKEIARLATHTILAACGFQHST SSIHSFPSSVCSHTDDIKLRHKSTLMSNSCRECFYVFVKNVVCSIMIEKGHSAPL" CDS complement(join(22145275..22145519,22146286..22147405)) /locus_tag="TCM_014395" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RING/U-box protein, putative isoform 2" /protein_id="EOY22179.1" /db_xref="Phytozome:GSVIVT01008167001" /translation="MISGNSHVKLLAEANVSIFKIVRGSNIPVFSGHNASVSSLPTYL PPPLVPKRERNAVDKVSGPIERSGNTMGNSTEPGARTLGLCRNVHSRIQALRENWHSL QSRSLSFSSSMVESGGGSRRKGTLALTSVSNYSSSEPQSSSSTSQQSTSQNGFVEPKV DLYDTDKAWKMMNIAKSMQKNCKRNSSLNQTSTKPPCLGSALKEAISSSGLHISQIQQ IETRNEERTGKQMHYRYYYHETEKEKHKSPEMDKQKRMVMSIQSSERVVTSHSPRFSP SSSSTKFQIQNDDCHVNGVRPIVKNAQNKCQESSSNANKDGGYSCSTSSAGSVLRGST DSLDSNLEFGVSILDILERRTRLEKSCSKSKDRRDDNVKWVDAFKEIARLATHTILAA CGFQHSTSSIHSFPSSVCSHTDDIKLRHKSTLMSNSCRECFYVFVKNVVCSIMIEKGH SAPL" mobile_element complement(22149264..22149979) /note="source:scaffold_2_CACTA_0244 14027 14705" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22151260..22151778 /note="source:CACAO_PIF_E119_scaffold_3 1765 2270" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(22153371..22155849) /locus_tag="TCM_014396" /note="dbxref CacaoGD:Thecc1EG014396" mRNA complement(join(22153371..22154345,22154829..22155000, 22155633..22155849)) /locus_tag="TCM_014396" /product="RING/U-box-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014395t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008167001" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(22153734..22154345,22154829..22155000, 22155633..22155646)) /locus_tag="TCM_014396" /note="paralog of Thecc1EG014395t1" /codon_start=1 /product="RING/U-box-like protein" /protein_id="EOY22180.1" /db_xref="Phytozome:GSVIVT01008167001" /db_xref="TAIR:AT3G05670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SIQ0" /translation="MGDTRGTIDCCDHTFCFVCIVKWAKVKSFCPICKLNFTTIYGPQ KNVVFASKRFVNVPQGNQVNHPFGNATSGLFNPHEEIKCRVCHGIADESNRRLLCDIC DSAVHTYCVGFSATVPAGGAWFCYGCALSRYNHDKTKVNIAMDNQKISGNFNVKLPVE TSVPFFGIARESNIPEVGHHNPSFSSLPNYLSPPFLAGRRILDEANGPSERGHHLSPH LGGKKSGKGRTRARVTELEQLVQSLQQKIEDEQEKKGWIGGSHEANH" gene 22157687..22159882 /locus_tag="TCM_014397" /note="dbxref CacaoGD:Thecc1EG014397" mRNA 22157687..22159882 /locus_tag="TCM_014397" /product="UDP-glucosyl transferase 89B1, putative" /inference="alignment:exonerate- protein:2:ricco:30138.m003911" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011420t1" /inference="similar to AA sequence:ricco:30138.m003911" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1346t1" CDS 22157853..22159313 /locus_tag="TCM_014397" /note="dbxref ricco:30138.m003911; paralog of Thecc1EG011420t1" /codon_start=1 /product="UDP-glucosyl transferase 89B1, putative" /protein_id="EOY22181.1" /db_xref="TAIR:AT1G73880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2U8" /translation="MAILGRNAHVLVFPFPALGHMIPLLDLTHYLATASDLTITILVT PKNLPLLTQLLSSHPQINTLVLPFPPHPSIPSHVENFKDLPQCCCPALIHALGQLYHP LFSWFESHPSPPSAIVSDMLLGWTQRLASRLGIKRIVFSPSGAMALSVLYSLWLDLPK LDDPQDQMAVISFDKIPKCPKYPWWKLSPTFGACVGGDPAGEFTKDGLVANVKSWGLI INSFAELEGPYFDHLKKVMGSDHVWAVGPLHPFHVNNSSSLTCPVRRGGPSSISVDGL LTWLDTCEDGEVVYVCFGSQVVLTNDQMAAVASALEKSGVRFIWCVKEPTEGHVEGRY GMIPNGFEDRAASRGYVIRGWAPQIGILGHRAVGAFLTHCGWNSVLEAVVAGVTMLTW PFGADQFVDDSLLVDELRVAKRACEGAETVPNSDELARVVAESVSNKNSVEREGVMQL RKAAVEAIKEGGSSAKDLEELVKHLCSTELDANSDM" mobile_element complement(22160021..22161361) /note="source:scaffold_4_CACTA_0482 4494 5887" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22161162..22161392) /note="source:CACAO_Mariner_E38_scaffold_2 1290 1479" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(22161928..22162086) /note="source:scaffold_1_CACTA_0008 9523 9682" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22162186..22162427) /note="source:INTACT445_F217_scaffold_8-int 88 306" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 22164307..22167171 /locus_tag="TCM_014398" /note="dbxref CacaoGD:Thecc1EG014398" mRNA join(22164307..22164575,22165197..22167171) /locus_tag="TCM_014398" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035674001" /inference="similar to AA sequence:Phytozome:GSVIVT01035674001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2045t1" CDS join(22164309..22164575,22165197..22166195) /locus_tag="TCM_014398" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY22182.1" /db_xref="Phytozome:GSVIVT01035674001" /translation="MALVRKGLVSVAKRGLSSQIMLIPFKSQRSFWNEPSSADPLLKK LLQVPSSLIKTTLDSYDRFALRNSEFSWNALVAGLPSLSSEKAQLVLEWKLEKMLKDS ERDYDQYLNLMSLCAKTQNVPLAMHVFTSMEAHGIKPTASVFNSLLHACLCSNDVITA FSLFEIMESSEGYKPDAETYETFIIGFSSLGNAVAMKSWYSAKKAAGYCATLQTYESL ISGCVKSGDFDSADKFYEEITSIGIMPNERILENLLEGFCRQRRFSQAKELLKSFLDV GRGISVKMAEKIVRLYSEYGKVEEMEDLLSTVVESGQVVEVMLQVHSGIIRMYAALNR LDDVEYSVGRMLKQGLSFRCTNDVEKVICCYFRKEAYDRLDIFLEHIKGSHKLSKSTY DLLIAGYRRAGLSQRLDLVIKDMELSGVL" gene 22167392..22172984 /locus_tag="TCM_014399" /note="dbxref CacaoGD:Thecc1EG014399" mRNA join(22167392..22167873,22168995..22169525, 22171164..22171276,22171760..22171895,22172005..22172984) /locus_tag="TCM_014399" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1076t3_C2" mobile_element complement(22167681..22169007) /note="source:CACAO_on_E732_scaffold_9 2640 3929" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22169027..22169893) /note="source:CACAO_PIF_E8_scaffold_1 1 891" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(22169221..22169525,22171164..22171248) /locus_tag="TCM_014399" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22183.1" /translation="MTKQQTGSCHCPSQGETGIVHNQHRRKYHTNLRQRERISQTKIK NTHTISMQIQKTFNTKEKKNEKHPDDQQVEAFSLNYYRSLTDKNNNYYKSFKKNVYNL CFPTPQKEHWPVLSSKGSTHQCSPWGA" mobile_element complement(22170426..22170526) /note="source:MITE_hAT_17 992 1086" /mobile_element_type="transposon:TIR/MITE" mobile_element 22170520..22170606 /note="source:scaffold_8_CACTA_0858 14202 14301" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22170528..22170674) /note="source:scaffold_4_CACTA_0505 10919 11074" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22171025..22171054) /note="source:CACAO_on_E71_scaffold_9 2839 2925" /mobile_element_type="transposon:TIR/hAT" mobile_element 22171045..22171146 /note="source:CACAO_on_E172_scaffold_245 56 154" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22171055..22171149) /note="source:scaffold_5_CACTA_0614 2484 2575" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22171499..22171641) /note="source:CACAO_on_E71_scaffold_9 2784 2925" /mobile_element_type="transposon:TIR/hAT" mobile_element 22171530..22171667 /note="source:CACAO_on_E215_scaffold_3 63 192" /mobile_element_type="transposon:TIR/hAT" mobile_element 22171642..22176509 /note="source:CACAO_Mutator_E714_scaffold_3 1 4868" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22176507..22177054 /note="source:CACAO_on_E20_scaffold_3 218 765" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22177162..22177237) /note="source:CACAO_hAT_E2547_scaffold_5 4 86" /mobile_element_type="transposon:TIR/hAT" gene complement(22179212..22187435) /locus_tag="TCM_014402" /note="dbxref CacaoGD:Thecc1EG014402" mRNA complement(join(22179212..22179658,22179747..22179808, 22180315..22180456,22180568..22180641,22180742..22180893, 22187365..22187435)) /locus_tag="TCM_014402" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6046t2" CDS complement(join(22179329..22179658,22179747..22179808, 22180315..22180456,22180568..22180641,22180742..22180820)) /locus_tag="TCM_014402" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22184.1" /translation="MVSIRFFGFVLVFILVLTGESAADSQVLKRILAAHGCVIEPARK NPAKLGKEVYDAVPAAAEVGNSRLEGRKMMLKWGLDKKTVTVEGSDGEESAKITGKVT NALNNQIGSSQEKFNYQDDRNMLKANFLSSATPEASRKHSVKLPSRNQLCFQYSKPVS DKGSSECFSRSPKLVPRDSDNSLEKHQSKKLLEAARDLLNFMNEDYRIPPTKPPVHNY EPLDQKQAIP" mobile_element 22185166..22185981 /note="source:CACAO_on_E19_scaffold_3 1 816" /mobile_element_type="transposon:TIR/hAT" gene 22187174..22193725 /locus_tag="TCM_014403" /note="dbxref CacaoGD:Thecc1EG014403" mRNA join(22187174..22188005,22188732..22189846, 22190042..22190218,22190376..22190489,22191266..22191370, 22191556..22191690,22191767..22191822,22191933..22192035, 22192109..22192225,22192452..22192578,22192714..22192844, 22192937..22193725) /locus_tag="TCM_014403" /product="Transducin family protein / WD-40 repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s06670.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s06670.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc408t4" mRNA join(22187673..22188005,22188732..22189846, 22190042..22190218,22190376..22190489,22191266..22191370, 22191556..22191690,22191767..22191822,22191933..22192035, 22192109..22192225,22192452..22192578,22192714..22192844, 22192937..22193051,22193163..22193650) /locus_tag="TCM_014403" /product="Transducin family protein / WD-40 repeat family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s06670.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s06670.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc247t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc408t4" CDS join(22187732..22188005,22188732..22189846, 22190042..22190218,22190376..22190489,22191266..22191370, 22191556..22191690,22191767..22191822,22191933..22192035, 22192109..22192225,22192452..22192578,22192714..22192844, 22192937..22193449) /locus_tag="TCM_014403" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein isoform 1" /protein_id="EOY22185.1" /db_xref="Phytozome:POPTR_0012s06670.1" /db_xref="TAIR:AT3G42660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTF5" /translation="MKIKSLKLREAHKGSANASFCSILWDLNAHHLVTASSSEPSISI HDPLLPSNPPRVLRHHRDGVTALALSPNSTCLSSGSIDHSVKLYKFPGGEFETNITRF TLPIRALAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHRGPVTGLAFDPNGEYL ASIDSIGTVIYWELQSGRTLYTLKGVAPDTGSDTSILNVLSWSPDGETLAVPGLKNDI VMYDRDTAEKLFTLRGDHTQPICFMSWSPNGKYMATSSLDKQILIWDVNRKQDIDRQK FDNRICCMAWKPIGNALAVIDVMGKYGVWESVVPSSMKSPTEDIPSSRSKNSNGLLFF DEEDEEDQELSMSGSLSDLGEDSHGESEPPSRKRLRKQSVIDDDQHEDVYNELNLCTK TEYRKKVHRINKESSDKERDGSRSMMTFRPKMQEAFQPGSTPPQPGKRNFLCYNMLGS ITTIKHDEYSHIEIDFHDTSTGPRVPPMTDYYGFTMASLNENGSVFANPCKGEKNMST LMYRPFSSWANNSEWYMRFEGEEVKAVALGGTWVAAVTSLNFLRIYTDGGLQKHILSL NGPVVTAAGFKDELAIVTHISDCLPSNEQMLEFRIFNISKGTQPFKGHLPLTPGSYLT WFGFTEEGQLSSYDSKGVLRVFTSQYGGNWLPLFSASKERKSGENYWVVGLNASKLFC IVCKNPDSFPQVLPKPVLTLLNLSFPLASSDLGEEALENEFMLNNLHLSQIQKRIEVM ADEGLDTTPLDDEAFDIEAAQDRCIFRLIASCCNGDKLVRATELVKLLSVEKSVRGAI QLATALKLPILAERFNNILEERLQSKTEVLKTSLPRSKHDRNVKADVAASMALTATER SEILEPTFSSSSAKLSAPLLIKKVKSSDRVKFGKPKTDGDQTACLEDSREVNDAGKNA GPSQVKNLQTQRPSNPFLKLPNNQEEKKVEEVMSESQSQGPSNPFFKSSNKVGEATGI QQSHRPSNPFLKSTAK" CDS join(22187732..22188005,22188732..22189846, 22190042..22190218,22190376..22190489,22191266..22191370, 22191556..22191690,22191767..22191822,22191933..22192035, 22192109..22192225,22192452..22192578,22192714..22192844, 22192937..22193051,22193163..22193449) /locus_tag="TCM_014403" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein isoform 2" /protein_id="EOY22186.1" /db_xref="Phytozome:POPTR_0012s06670.1" /db_xref="TAIR:AT3G42660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTF5" /translation="MKIKSLKLREAHKGSANASFCSILWDLNAHHLVTASSSEPSISI HDPLLPSNPPRVLRHHRDGVTALALSPNSTCLSSGSIDHSVKLYKFPGGEFETNITRF TLPIRALAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHRGPVTGLAFDPNGEYL ASIDSIGTVIYWELQSGRTLYTLKGVAPDTGSDTSILNVLSWSPDGETLAVPGLKNDI VMYDRDTAEKLFTLRGDHTQPICFMSWSPNGKYMATSSLDKQILIWDVNRKQDIDRQK FDNRICCMAWKPIGNALAVIDVMGKYGVWESVVPSSMKSPTEDIPSSRSKNSNGLLFF DEEDEEDQELSMSGSLSDLGEDSHGESEPPSRKRLRKQSVIDDDQHEDVYNELNLCTK TEYRKKVHRINKESSDKERDGSRSMMTFRPKMQEAFQPGSTPPQPGKRNFLCYNMLGS ITTIKHDEYSHIEIDFHDTSTGPRVPPMTDYYGFTMASLNENGSVFANPCKGEKNMST LMYRPFSSWANNSEWYMRFEGEEVKAVALGGTWVAAVTSLNFLRIYTDGGLQKHILSL NGPVVTAAGFKDELAIVTHISDCLPSNEQMLEFRIFNISKGTQPFKGHLPLTPGSYLT WFGFTEEGQLSSYDSKGVLRVFTSQYGGNWLPLFSASKERKSGENYWVVGLNASKLFC IVCKNPDSFPQVLPKPVLTLLNLSFPLASSDLGEEALENEFMLNNLHLSQIQKRIEVM ADEGLDTTPLDDEAFDIEAAQDRCIFRLIASCCNGDKLVRATELVKLLSVEKSVRGAI QLATALKLPILAERFNNILEERLQSKTEVLKTSLPRSKHDRNVKADVAASMALTATER NGDQTACLEDSREVNDAGKNAGPSQVKNLQTQRPSNPFLKLPNNQEEKKVEEVMSESQ SQGPSNPFFKSSNKVGEATGIQQSHRPSNPFLKSTAK" gene 22194145..22196545 /locus_tag="TCM_014405" /note="dbxref CacaoGD:Thecc1EG014405" mRNA 22194145..22196393 /locus_tag="TCM_014405" /product="Zinc finger protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m003907" /inference="similar to AA sequence:Phytozome:POPTR_0015s03560.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc631t3" mRNA join(22194321..22195803,22196512..22196545) /locus_tag="TCM_014405" /product="Zinc finger protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30138.m003907" /inference="similar to AA sequence:Phytozome:POPTR_0015s03560.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5016t2; alternateUTRof:Thecc1EG014405t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc631t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc772t10" CDS 22194386..22195801 /locus_tag="TCM_014405" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zinc finger protein, putative isoform 1" /protein_id="EOY22187.1" /db_xref="Phytozome:POPTR_0015s03560.1" /db_xref="TAIR:AT5G08139.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLH2" /translation="MASVSFLQLHEPEDDVVNHQQQQQQHEQTLNLDSLPYWSHDIHF FSSSSSDPDLPHQDDDVSLPDSLIINGPDLFDRRENQVNFVIDLFHQRVEQSQVISNN TPNNNTNSNNNGNTINNDDDINAVDLPSDSLNESGFGVIEGSHELDLGLVLGFDSMDT NEIDGSGGYDDDDDFFVERRVSGLSSCEAASSFSGVERFGDSIRLVGFRSDSEEDEEN GALAMDLNSGDDYGIDDHVSDGYDVDAADDDVSVSIPLCWDSLQLEDRRDTNEDFEWE EVDGRVDEREVLSVFVDADDDENSVSLSISPVIAPEDVVSFERAAGLGNLGWEVLLNA NNLETNPEMEENAEPFFADRDDYIYTAEYEMLFGQFTENDNAYIGRPPASKYVVENLP SVVVTQEDVVNGNALCAVCKDEVNLGEKMKQLPCAHRYHGDCIIPWLGIRNTCPVCRH ELPTDDADYERRRSLGASGAP" CDS 22194386..22195801 /locus_tag="TCM_014405" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Zinc finger protein, putative isoform 1" /protein_id="EOY22189.1" /db_xref="Phytozome:POPTR_0015s03560.1" /db_xref="TAIR:AT5G08139.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLH2" /translation="MASVSFLQLHEPEDDVVNHQQQQQQHEQTLNLDSLPYWSHDIHF FSSSSSDPDLPHQDDDVSLPDSLIINGPDLFDRRENQVNFVIDLFHQRVEQSQVISNN TPNNNTNSNNNGNTINNDDDINAVDLPSDSLNESGFGVIEGSHELDLGLVLGFDSMDT NEIDGSGGYDDDDDFFVERRVSGLSSCEAASSFSGVERFGDSIRLVGFRSDSEEDEEN GALAMDLNSGDDYGIDDHVSDGYDVDAADDDVSVSIPLCWDSLQLEDRRDTNEDFEWE EVDGRVDEREVLSVFVDADDDENSVSLSISPVIAPEDVVSFERAAGLGNLGWEVLLNA NNLETNPEMEENAEPFFADRDDYIYTAEYEMLFGQFTENDNAYIGRPPASKYVVENLP SVVVTQEDVVNGNALCAVCKDEVNLGEKMKQLPCAHRYHGDCIIPWLGIRNTCPVCRH ELPTDDADYERRRSLGASGAP" mRNA join(<22194461..22195839,22196513..22196541) /locus_tag="TCM_014405" /product="Zinc finger protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30138.m003907" /inference="similar to AA sequence:Phytozome:POPTR_0015s03560.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc612t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc631t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc772t10" CDS <22194461..22195801 /locus_tag="TCM_014405" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Zinc finger protein, putative isoform 2" /protein_id="EOY22188.1" /db_xref="Phytozome:POPTR_0015s03560.1" /db_xref="TAIR:AT5G08139.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLH2" /translation="HEQTLNLDSLPYWSHDIHFFSSSSSDPDLPHQDDDVSLPDSLII NGPDLFDRRENQVNFVIDLFHQRVEQSQVISNNTPNNNTNSNNNGNTINNDDDINAVD LPSDSLNESGFGVIEGSHELDLGLVLGFDSMDTNEIDGSGGYDDDDDFFVERRVSGLS SCEAASSFSGVERFGDSIRLVGFRSDSEEDEENGALAMDLNSGDDYGIDDHVSDGYDV DAADDDVSVSIPLCWDSLQLEDRRDTNEDFEWEEVDGRVDEREVLSVFVDADDDENSV SLSISPVIAPEDVVSFERAAGLGNLGWEVLLNANNLETNPEMEENAEPFFADRDDYIY TAEYEMLFGQFTENDNAYIGRPPASKYVVENLPSVVVTQEDVVNGNALCAVCKDEVNL GEKMKQLPCAHRYHGDCIIPWLGIRNTCPVCRHELPTDDADYERRRSLGASGAP" gene 22199844..22200759 /locus_tag="TCM_014407" /note="dbxref CacaoGD:Thecc1EG014407" mRNA 22199844..22200759 /locus_tag="TCM_014407" /product="Basic leucine-zipper 70, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03580.1" /inference="alignment:exonerate- protein:2:ricco:30138.m003906" /inference="similar to AA sequence:Phytozome:POPTR_0015s03580.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3616t1" CDS 22199889..22200488 /locus_tag="TCM_014407" /codon_start=1 /product="Basic leucine-zipper 70, putative" /protein_id="EOY22190.1" /db_xref="Phytozome:POPTR_0015s03580.1" /db_xref="TAIR:AT5G60830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RLH1" /translation="MEAPDFEAHRNQPHATPNQSFFAFCPSQKTYTSAAHLNMQSLEI AGNRSVQHGNSSQHPDSSTNFSSRLSPNSQVHFPFHLFSPNSSSLSTEDEGREYQPSI VDDKRLRRMISNRESARRSRMRKKQQIEELQSQVDQLQTINRQLSQKLINLLESNHET LQENAQLKERVSTLHMVLADVFTPPRNLEDTSLEHKSAS" gene complement(22201101..22221262) /locus_tag="TCM_014408" /note="dbxref CacaoGD:Thecc1EG014408" mRNA complement(join(22201101..22201357,22201897..22202052, 22202140..22202194,22202310..22202413,22205130..22205454, 22221196..22221262)) /locus_tag="TCM_014408" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s06690.1" /inference="similar to AA sequence:ricco:30138.m003905" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1470t1" mRNA complement(join(22201751..22202052,22202140..22202194, 22202310..22202413,22205130..22205454,22221196..22221262)) /locus_tag="TCM_014408" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s06690.1" /inference="similar to AA sequence:ricco:30138.m003905" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b013921t1a2; alternateUTRof:Thecc1EG014408t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1470t1" CDS complement(join(22201920..22202052,22202140..22202194, 22202310..22202413,22205130..22205320)) /locus_tag="TCM_014408" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30138.m003905" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22191.1" /translation="MASANLPSSPPPPPSPPSISASHSESSATIPTAVVPPQPQVDAA AENGTLNDDDQKPQIADHFAVLDDPEQIEKYKKYEADYTRRLMAKYFSKKNFYGGNIF DEKTTIDSETILSSRWPCTRSFADPVHAFEDQTNGGSNSDAETPTNISNGKFPLKKNG " CDS complement(join(22201920..22202052,22202140..22202194, 22202310..22202413,22205130..22205320)) /locus_tag="TCM_014408" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30138.m003905" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22192.1" /translation="MASANLPSSPPPPPSPPSISASHSESSATIPTAVVPPQPQVDAA AENGTLNDDDQKPQIADHFAVLDDPEQIEKYKKYEADYTRRLMAKYFSKKNFYGGNIF DEKTTIDSETILSSRWPCTRSFADPVHAFEDQTNGGSNSDAETPTNISNGKFPLKKNG " gene 22207353..22208052 /locus_tag="TCM_014409" /note="dbxref CacaoGD:Thecc1EG014409" mRNA 22207353..22208052 /locus_tag="TCM_014409" /product="GTPase IMAP family member 1, putative" /inference="alignment:exonerate-protein:2:frave:gene34440" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014417t1" /inference="similar to AA sequence:frave:gene34440" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3833t1" CDS 22207414..22207923 /locus_tag="TCM_014409" /note="dbxref frave:gene34440; paralog of Thecc1EG014417t1" /codon_start=1 /product="GTPase IMAP family member 1, putative" /protein_id="EOY22193.1" /translation="MAKVFQEYILSKYVTKVFPLLARCAPQLPPPSPPSAAAVDLELA AEPAALTVKDSQNYLAWEKLIVAFCLGSSLEIATLFAQIGPARLPVTFTFLSLAILLA FTCLCVGKYFSNSKFLTMARMLEQLGGFFVVTAFFIAIAIPFPLWLQCCTGAVYSISF LSILIYNLF" mobile_element 22214718..22216167 /note="source:CACAO_M_E22889_F9_scaffold_3 1 1450" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22221147..22284749) /locus_tag="TCM_014411" /note="dbxref CacaoGD:Thecc1EG014411" mRNA complement(join(22221147..22224263,22283440..22283608, 22284525..22284749)) /locus_tag="TCM_014411" /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g12990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014418t2" /inference="similar to AA sequence:Phytozome:Glyma08g12990.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2814t1; alternateUTRof:Thecc1EG014411t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2814t3" mRNA complement(join(22221147..22224263,22283440..22283608, 22284111..22284185,22284525..22284749)) /locus_tag="TCM_014411" /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g12990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014418t2" /inference="similar to AA sequence:Phytozome:Glyma08g12990.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2814t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2814t3" CDS complement(22221460..22223847) /locus_tag="TCM_014411" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014418t2" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /protein_id="EOY22194.1" /db_xref="Phytozome:Glyma08g12990.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ASB5" /translation="MQNLNNHDEVSKMFDIVIWENVSSERTEEKLQEDIARRLKLKME GVVHPEDVARTISEEFNNKKYLLLLDDVMDSVDLEDIGIPDNKNGSKVVLTTEFRHVC SSMADRLIEVHPLSSNEAWKMFQQMVSDVVDLPDIEPVAQLVAKECARLPLLIKTVAG AFKLKDSVPEWRKGLKDLRKWPEIEIPGLTELHSFLKFCYDQLKDDQKRKCFLYGALY PAESKIYTDYLLECWTAEGLVGNTNEKRRFQDARDEGFDTLKYLTNVSLLEKGERMIY VQMNNSIRQVALYISSQDPDCKFLTGMTENSPDCLEENDWQQAKRISMIDKKLRDLPE SPNCNMLLSLLLQRNSNLTGIPQSFFENMKKLLVLDLYGTGIESLPSSLAKLTGLKGL YLNNCINVTELPPEIGELNCLEVLDIRGCRISFIPFHIQKLINLRCLRISYYRSSNLN HCQDMDIDCNVIPLLARLEELMIDVGSYDHWCNEVVEVMRQVATLENLTTLRICFPRS EVLKTFMQHSPSWKDRQQLTSFRFFVGCQNRKRPQILECFKYKINRYLGYCHGNYSDD STICDLLAETDALELVEHKDIKSLTDFGNVASFNRIRGCLIERCNKMTTITDNNRTEG RDILQNLEQLHLVNLRSLQTIFEGSLSIKSLSKLHTVVVTSCPMLTKVFSLRVIQQLS VLRKLAIQKCAKLEVLIEKPDSAGQVSPAFPNLETLILIEMPKLRTICVDKSLAWPSL KELQVYMCPELKSLPFDKDNAAYLKSIEAEQVWWEALHWPQNEVKEQLQSMCNLR" CDS complement(22221460..22223847) /locus_tag="TCM_014411" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014418t2" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /protein_id="EOY22195.1" /db_xref="Phytozome:Glyma08g12990.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ASB5" /translation="MQNLNNHDEVSKMFDIVIWENVSSERTEEKLQEDIARRLKLKME GVVHPEDVARTISEEFNNKKYLLLLDDVMDSVDLEDIGIPDNKNGSKVVLTTEFRHVC SSMADRLIEVHPLSSNEAWKMFQQMVSDVVDLPDIEPVAQLVAKECARLPLLIKTVAG AFKLKDSVPEWRKGLKDLRKWPEIEIPGLTELHSFLKFCYDQLKDDQKRKCFLYGALY PAESKIYTDYLLECWTAEGLVGNTNEKRRFQDARDEGFDTLKYLTNVSLLEKGERMIY VQMNNSIRQVALYISSQDPDCKFLTGMTENSPDCLEENDWQQAKRISMIDKKLRDLPE SPNCNMLLSLLLQRNSNLTGIPQSFFENMKKLLVLDLYGTGIESLPSSLAKLTGLKGL YLNNCINVTELPPEIGELNCLEVLDIRGCRISFIPFHIQKLINLRCLRISYYRSSNLN HCQDMDIDCNVIPLLARLEELMIDVGSYDHWCNEVVEVMRQVATLENLTTLRICFPRS EVLKTFMQHSPSWKDRQQLTSFRFFVGCQNRKRPQILECFKYKINRYLGYCHGNYSDD STICDLLAETDALELVEHKDIKSLTDFGNVASFNRIRGCLIERCNKMTTITDNNRTEG RDILQNLEQLHLVNLRSLQTIFEGSLSIKSLSKLHTVVVTSCPMLTKVFSLRVIQQLS VLRKLAIQKCAKLEVLIEKPDSAGQVSPAFPNLETLILIEMPKLRTICVDKSLAWPSL KELQVYMCPELKSLPFDKDNAAYLKSIEAEQVWWEALHWPQNEVKEQLQSMCNLR" mobile_element complement(22225545..22226014) /note="source:MITE_Unknown_5_3 1 469" /mobile_element_type="transposon:TIR/MITE" gene 22226019..22231383 /locus_tag="TCM_014412" /note="dbxref CacaoGD:Thecc1EG014412" mRNA join(22226019..22226206,22227062..22228766, 22229770..22229823,22229914..22229999,22230505..22230629, 22230956..22231383) /locus_tag="TCM_014412" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014419t1" /inference="similar to AA sequence:Phytozome:GSVIVT01023173001" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4785t1" CDS join(22227134..22228766,22229770..22229823, 22229914..22229999,22230505..22230629,22230956..22231121) /locus_tag="TCM_014412" /note="paralog of Thecc1EG014419t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22196.1" /db_xref="Phytozome:GSVIVT01023173001" /translation="MQQSVLKANGSGLTQLREEEEWAGKGVLFMNDNKASELHPSPNC PSLIALYLQGNYELTAIPPFFFRRMALLQVLDLSHTSIKCLPKSLPRLVALKKLLLRR CQLFMELSPQVAKLSNLQELDLDETQIMDLPREIGKLLNLRHLRVSFYLICGKKKSKS NILIHPETISDLSLLTELSIDVNPTDKRWDDSVEAVVKEVCNSETLTTLSLYLPKFQL LDNISSLYPSLSGFRFTVGHHKRRIISRVPHEVEAEFRNWDKCLKFVNGENIPIEIKD VLKYSTSFFLDHHATAMNLSEFGIENMKRLKFCLLVDCNKMETIIDGERRYEGNEDDL SESDPSPVENVLESLEYLIIYYMENLESIWRGPNRYGCMSRLKFLALHTCPQLINIFS HTLLGNFVNLEEFILEDCPLVTSLVSHASVKPMVSDNFLPSLKRLLLLYLPELVSISN GLLIAPKLETIGFYNCPKLKSISKMELSSKTLKIIKGELQWWEDMKWNEAEWGNRPDY LMRIFSPIDKEKDVMNQLAEDRDLFEVTMQNEGQQLDDEKLIEVSTQDHGGRWSDYTE ERTTGADVTKSISSVCILPSTPWTEAPKQAWSFSPDENKRLEDDYFDLASETSEADDI VDEPKAKRWNCTENENKGVIRFASKIATGDRTEFQVKSNVDILDDGYKWRNHRTKLKG YPYSS" mobile_element 22231128..22235676 /note="source:INTACT681_F299_scaffold_3-int 1 4549" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22237162..22238274 /note="source:INTACT639F_F363_scaffold_5-int 7477 8582" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22239129..22239333) /note="source:scaffold_1_CACTA_0009 4840 5034" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22239158..22239394 /note="source:scaffold_1_CACTA_0009 13031 13264" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22240546..22241116) /note="source:scaffold_1_CACTA_0009 1642 2213" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22242616..22243351) /note="source:CACAO_M_E4753_F17_scaffold_2 7256 7819" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22244728..22244799) /note="source:scaffold_5_CACTA_0591 15562 15636" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22246100..22246645) /note="source:CACAO_M_S_E5657_F17_scaffold_2 984 1531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22246647..22247007) /note="source:CACAO_M_E85127_F17_scaffold_10 1 359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22248500..22251291 /note="source:CACAO_M_S_E32464_F233_scaffold_3 1 2784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22251191..22251311) /note="source:CACAO_Again_on_S_E75_scaffold_2 965 1087" /mobile_element_type="transposon:TIR/hAT" mobile_element 22252899..22252988 /note="source:CACAO_M_E70014_F74_scaffold_10 7821 7916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22256731..22258781 /note="source:CACAO_on_E732_scaffold_9 124 2183" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22258782..22259112 /note="source:INTACT19_F111_scaffold_6-int 13995 14328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22259890..22260134 /note="source:scaffold_2_CACTA_0248 10297 10529" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22259919..22270976 /note="source:INTACT19_F111_scaffold_6-int 1171 12227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22270968..22273052) /note="source:INTACT726_F314_scaffold_5-int 1862 4110" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22270972..22272673 /note="source:INTACT19_F111_scaffold_6-int 12675 14332" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22273537..22274485) /note="source:CACAO_M_E4063_F12_scaffold_2 4908 5885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22274485..22275796 /note="source:CACAO_PIF_E8_scaffold_1 4700 6000" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22275927..22276405 /note="source:CACAO_on_E732_scaffold_9 3464 3926" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 22277161..22277917 /locus_tag="TCM_014417" /note="dbxref CacaoGD:Thecc1EG014417" mRNA 22277161..22277917 /locus_tag="TCM_014417" /product="GTPase IMAP family member 1, putative" /inference="alignment:exonerate-protein:2:frave:gene34438" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014409t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 22277279..22277731 /locus_tag="TCM_014417" /note="paralog of Thecc1EG014409t1" /codon_start=1 /product="GTPase IMAP family member 1, putative" /protein_id="EOY22197.1" /translation="MAKVFQAYILSKYVTKVFPLLTRCAPQLPPPSPPSAAAVDLKLA TEPAALTVKDSQNYLAWEKLIVAFCLGSSVEITTLFAQIGPARLPVTFTFLSLAILLA STCLCVGKYFSNSKFLMMARMSEQLGGFFVVTAFFIAIAIPFPVWLQC" mobile_element 22278699..22279805 /note="source:INTACT639F_F363_scaffold_5-int 7472 8577" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(22280179..22285123) /locus_tag="TCM_014418" /note="dbxref CacaoGD:Thecc1EG014418" mRNA complement(join(22280179..22283608,22284111..22284185, 22284525..22285123)) /locus_tag="TCM_014418" /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g12990.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014411t2" /inference="similar to AA sequence:Phytozome:Glyma08g12990.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1986t2" mRNA complement(join(22280305..22283608,22284525..22284737)) /locus_tag="TCM_014418" /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g12990.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014411t2" /inference="similar to AA sequence:Phytozome:Glyma08g12990.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4798t2; alternateUTRof:Thecc1EG014418t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1986t2" CDS complement(22280629..22283589) /locus_tag="TCM_014418" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014411t2" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /protein_id="EOY22198.1" /db_xref="Phytozome:Glyma08g12990.1" /db_xref="TAIR:AT4G26090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ASB5" /translation="MADNIVASCLTGAVSQAGADITNYAKSKVSLSQSMEKNYEMLRN EVARLQALRDDYEREVKKHKMKTTTSSYDVWLRSVNKTLDNAKDLEDRFEEDRRPSSR YIHVKRRSNYSGKLVKMYEEIQKLVEGGKFLGGILVDKPIDPVLKVNAPEIKRFPSLQ RPLEQVLELLRNDKLKGIGICGTLGVGKTTIMQNLNNHDEVAKMFDIVIWANVSSERS EEKLQTDIARRLKLKMEGVVHPEDVARTISEELNNKKYLLLLDDVMDSVDLEDIGIPD NKNGSKVVLTTEFRHVCSSMADRLIEVHPLSSNEAWKMFQQMVSDVVDLPDIEPVAQL VAKECARLPLLIKTVAGAFKLKDSVPEWRKGLKDLRKWPEIEIPGLTELHSFLKFCYD QLKDDQKRKCFLYGALYPAESKIYTDYLLECWTAEGLVGNTNEKRRFQDARDEGYDTL KYLTNVSLLEKGERMIYVQMNNSIRQVALYISSQDPDCKFLTGMTENSPDCLEENDWQ QAKRISMIDKKLRDLPESPNCSMLLSLLLQRNSNLTGIPQSFFENMKKLLVLDLYGTG IESLPLSLAKLTGLRGLYLNNCINLTELPPEIGELHCLEVLDIRGCRISFIPFHIQKL INLRCLRVSYYRSSNPNDCQYMDIDCNVIPLLARLEELMIDVGSYDHWCNEVVEVMKQ VATLENLTTLRICFPKSEVLKTFMQHSPSWKDRQQLTSFRFFVGCQNRKRPQILECFK YKINRYLGYCHGNYSDDSTICDLLAETDALELVEHKDIMSLTNFGNVASFNRIRGCLI ERCNKMTTITDNNRTEGRDILPNLEQLHLVNLRSLRTIFEGSLSTKSLSKLHTVVVTN CPMLTKVFSLRVIQQLSVLCILEIRNCTMLEVLIEKPDSAGQVSPAFPNLETLMLIEM PKLRTICVDKSLAWPSLKELQVYMCPELKSLPFDKDNAAYLKSIEAEQVWWEALHWPQ NEVKEQLQSMCNLR" CDS complement(22280629..22283589) /locus_tag="TCM_014418" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014411t2" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /protein_id="EOY22199.1" /db_xref="Phytozome:Glyma08g12990.1" /db_xref="TAIR:AT4G26090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ASB5" /translation="MADNIVASCLTGAVSQAGADITNYAKSKVSLSQSMEKNYEMLRN EVARLQALRDDYEREVKKHKMKTTTSSYDVWLRSVNKTLDNAKDLEDRFEEDRRPSSR YIHVKRRSNYSGKLVKMYEEIQKLVEGGKFLGGILVDKPIDPVLKVNAPEIKRFPSLQ RPLEQVLELLRNDKLKGIGICGTLGVGKTTIMQNLNNHDEVAKMFDIVIWANVSSERS EEKLQTDIARRLKLKMEGVVHPEDVARTISEELNNKKYLLLLDDVMDSVDLEDIGIPD NKNGSKVVLTTEFRHVCSSMADRLIEVHPLSSNEAWKMFQQMVSDVVDLPDIEPVAQL VAKECARLPLLIKTVAGAFKLKDSVPEWRKGLKDLRKWPEIEIPGLTELHSFLKFCYD QLKDDQKRKCFLYGALYPAESKIYTDYLLECWTAEGLVGNTNEKRRFQDARDEGYDTL KYLTNVSLLEKGERMIYVQMNNSIRQVALYISSQDPDCKFLTGMTENSPDCLEENDWQ QAKRISMIDKKLRDLPESPNCSMLLSLLLQRNSNLTGIPQSFFENMKKLLVLDLYGTG IESLPLSLAKLTGLRGLYLNNCINLTELPPEIGELHCLEVLDIRGCRISFIPFHIQKL INLRCLRVSYYRSSNPNDCQYMDIDCNVIPLLARLEELMIDVGSYDHWCNEVVEVMKQ VATLENLTTLRICFPKSEVLKTFMQHSPSWKDRQQLTSFRFFVGCQNRKRPQILECFK YKINRYLGYCHGNYSDDSTICDLLAETDALELVEHKDIMSLTNFGNVASFNRIRGCLI ERCNKMTTITDNNRTEGRDILPNLEQLHLVNLRSLRTIFEGSLSTKSLSKLHTVVVTN CPMLTKVFSLRVIQQLSVLCILEIRNCTMLEVLIEKPDSAGQVSPAFPNLETLMLIEM PKLRTICVDKSLAWPSLKELQVYMCPELKSLPFDKDNAAYLKSIEAEQVWWEALHWPQ NEVKEQLQSMCNLR" gene 22285422..22297067 /locus_tag="TCM_014419" /note="dbxref CacaoGD:Thecc1EG014419" mRNA join(22285422..22285592,22286516..22288227, 22289398..22289474,22290015..22290139,22290464..22290628, 22290729..22290913,22291296..22291346,22292209..22292250, 22294640..22294923,22295615..22295842,22296443..22297067) /locus_tag="TCM_014419" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g018900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014412t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025315001" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1192t2" CDS join(22286577..22288227,22289398..22289474, 22290015..22290139,22290464..22290628,22290729..22290913, 22291296..22291346,22292209..22292250,22294640..22294923, 22295615..22295842,22296443..22296871) /locus_tag="TCM_014419" /note="paralog of Thecc1EG014412t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22200.1" /db_xref="Phytozome:GSVIVT01025315001" /db_xref="TAIR:AT4G12070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GM90" /translation="MHTSTRMQQSVLNESGSGLTQLQKEEVWAGKRVHFMNDNKVSEL PPSPNCPSLIELYLQWNYELTAIPPLFFQRIALLQVLDLSHTSIKCLPKSLPKLVALK KLLLRCCQLFMELSPLVGKLSNLEELDLDETQIMDMPREIGKLLKLRHLRVSFYQICG KKKSKLNIVIHPETISNLSQLTLLSIDVNPTDKRWDDSVEAVVKEVCNSKTLMTLSLY LPKFQLLDCISSLYPSLSGFRFIVGHHKRRIISRVPREVEAEFRNWDKCLKFVNGENI PIEIKGVLKYSTSFFLDQHATALNLSEFGIENMKRLKFCLLVDCNKMETIIDGERHYD GNEDDPSESDPSPVENVLESLEYLSIYYMENLGSIWRGTSHYGCMSKLKFLALHTCPR LINIFSHTLLGNFVNLEEFILEDCPLVTSLVSHASVKPMMADKFLPSLKRLLLLYLPE LVSISYGLLIAPKLETIGFYNCPKLKSISKMELSSKTLKIIKGELQWWEDMKWNEAEW GNRPDYLVHIFSPIDKEKDVMTQLAEDGDLFEATMQNEGQQLGNCGSLLSDYMEETVT GTDVTESISSAPKQAWSFSSEKNKRLEDDYFDLAPETGDVDDDEDGPKDKRWNCTENE NKGVIGFASKIVSGDRTEFRKKTNMEILEDGYRWRKYRTKIIKGNPHSRNYYKCLTRG CPVKKMVARDSQDTSFLVLTYEGIHNHEQPFFKVLNNVEDAAEAAKTISPTKGYRDVL EASIQDKGLHSGIPEASVRDESQQSASRNSRMVSELSRMRLQDGYVSYPWERRMRDVL SVPNSSCFLSILLLPKASDRVASQYNDLEDTFTRANAWLNASQASGVPIVFMNIQTES LLTKFSGETASSAVNAGSLSDLSNLANASLYGFEDYHGVDIGVVRAVRLWYAPLAGEI PIEIKLKEDDTKLGFAISRTEEGFIYISSVMDDDENVPSTRSGLSNLYKESVSASRLL VVSRLSNQKVLPWMVSSTGAVRCFDTVSLSQKLSLLRHVHMPILMHVFLWDQSVVSRG FGSARLRIPSPSVLPLPPKVRLAHQPNDDNQILPLPPEEPNESIVTGE" mobile_element complement(22296898..22297338) /note="source:CACAO_M_E44085_F2_scaffold_5 366 803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22297250..22297361 /note="source:CACAO_M_S_E5534_F2_scaffold_2 306 412" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22297339..22297720 /note="source:CACAO_M_S_E5210_F12_scaffold_1 8013 8306" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22298025..22312557) /note="source:INTACT89_F140_scaffold_9-int 2266 15806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22312945..22313452) /note="source:CACAO_M_S_E52027_F3_scaffold_5 5168 5688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22313453..22314059 /note="source:CACAO_on_E459_scaffold_2 1292 1887" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22314060..22314781) /note="source:CACAO_M_S_E52027_F3_scaffold_5 4425 5167" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22314782..22315650) /note="source:INTACT170F_F2_scaffold_3-int 2777 3647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22316756..22321569 /note="source:INTACT525_F2_scaffold_2-int 1290 6099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22322810..22322862) /note="source:CACAO_M_S_E122136_F76_scaffold_10 13651 13701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22323391..22323531 /note="source:CACAO_Mutator_E592_scaffold_3 20486 20622" /mobile_element_type="transposon:TIR/Mutator" gene complement(22323970..22327782) /locus_tag="TCM_014425" /note="dbxref CacaoGD:Thecc1EG014425" mRNA complement(join(22323970..22324127,22327373..22327434, 22327529..22327782)) /locus_tag="TCM_014425" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage" CDS complement(join(22323998..22324127,22327373..22327434, 22327529..22327618)) /locus_tag="TCM_014425" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22201.1" /translation="MRCSQIQMKAAAWCLQTEDSRRPSMSMAVKFHHLRYLGRGDGQG NLHEDGIKLQSQFFFWIIEFLFQLPRESGILLQCLKVGETPKNQQLTSN" mobile_element complement(22325721..22326645) /note="source:CACAO_M_E49279_F74_scaffold_6 991 1894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22328208..22329001 /note="source:scaffold_8_CACTA_0867 418 1189" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22329468..22330992 /note="source:CACAO_M_E22893_F264_scaffold_3 1 1525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22333493..22334818 /note="source:scaffold_8_CACTA_0867 4067 5402" /mobile_element_type="transposon:TIR/CACTA" gene 22340784..22346162 /locus_tag="TCM_014426" /note="dbxref CacaoGD:Thecc1EG014426" mRNA join(22340784..22340836,22341703..22343406, 22345445..22345495,22345811..22346162) /locus_tag="TCM_014426" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014412t1" /inference="similar to AA sequence:Phytozome:GSVIVT01023191001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; weak similarity to NB-ARC domain-containing disease resistance protein; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc949t9_C1" CDS join(22341771..22343406,22345445..22345495, 22345811..22345977) /locus_tag="TCM_014426" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014412t1; weak similarity to NB-ARC domain-containing disease resistance protein" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22202.1" /db_xref="Phytozome:GSVIVT01023191001" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C6Y9" /translation="MQQSVLKASGSGLTHLGKEEEWAGKGVLFMNDNKESELPPSPNC PSLIALYLQGNYELTAIPPLFFQRMALLQVLDLSHTSIKCLPKSLPKLVALKKLLLRR CQLFMELSPQVAKLSNLEELDLDETQIMDLPIETGKLFKLRHLRVSFYQICGKKKSKY SNIVIHPKTISNLSQLTELSIDVNPTDKRWDDSVEAVVKEVCNSETLTTLSLYLPKFE LLDSISSLYPSLSGFRFIVGHHKRRIISRVPHEVEAEFRNWDKCLKFVNGENIPIEIK GVLKYSTSFFLDHHATATNLSEFGIENMKRLKFCLLVDCNKMETIIDGERHYDGNEDD PAESDPSPVENVLESLEYLSIYYMENLESIWRGPYRYGCMSKLKFLALHTCPQLINIF SHTLLGNFVNLEEFILEDCPLVTCLVSHASVKPIMSDKFLPSLKRLLLLYLPELVSIS NGLQIAPKLETIGFYNCPKLKSISKMELSSKTLKIIKGELQWWEDMKWNEAEWGIRPD YLVRIFSPIDKEKDVMTQLAEDRDIFEVTTQNKSQQQGYGDVLEASTQDKGQHPANYL NFKGLMDLTGQTIADMFEGRNPEEMRNIFNIENDFTLEEEEDWPGKYSVGL" mRNA join(<22342328..22343406,22345445..22345495, 22345748..22346114) /locus_tag="TCM_014426" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014412t1" /inference="similar to AA sequence:Phytozome:GSVIVT01023173001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4812t6; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc949t9_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4812t8" CDS join(<22342329..22343406,22345445..22345495, 22345748..22345977) /locus_tag="TCM_014426" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014412t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY22203.1" /db_xref="Phytozome:GSVIVT01023173001" /translation="DKRWDDSVEAVVKEVCNSETLTTLSLYLPKFELLDSISSLYPSL SGFRFIVGHHKRRIISRVPHEVEAEFRNWDKCLKFVNGENIPIEIKGVLKYSTSFFLD HHATATNLSEFGIENMKRLKFCLLVDCNKMETIIDGERHYDGNEDDPAESDPSPVENV LESLEYLSIYYMENLESIWRGPYRYGCMSKLKFLALHTCPQLINIFSHTLLGNFVNLE EFILEDCPLVTCLVSHASVKPIMSDKFLPSLKRLLLLYLPELVSISNGLQIAPKLETI GFYNCPKLKSISKMELSSKTLKIIKGELQWWEDMKWNEAEWGIRPDYLVRIFSPIDKE KDVMTQLAEDRDIFEVTTQNKSQQQGYGDVLEASTQDKGQHPVIYHNFVVNVDKPTVV DLILAANYLNFKGLMDLTGQTIADMFEGRNPEEMRNIFNIENDFTLEEEEDWPGKYSV GL" mobile_element 22346104..22346219 /note="source:CACAO_Mariner_E36_scaffold_2 3115 3230" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 22346216..22346282 /note="source:CACAO_M_S_E37995_F197_scaffold_4 358 426" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22346281..22346331) /note="source:INTACT459_F220_scaffold_4-int 8254 8303" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22346460..22346553 /note="source:CACAO_M_S_E84671_F88_scaffold_6 351 436" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22346554..22350931) /note="source:CACAO_M_E57143_F88_scaffold_8 1178 5567" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22350989..22352583) /note="source:CACAO_M_E4900_F368_scaffold_2 435 2033" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22351466..22352886 /note="source:CACAO_hAT_E938_scaffold_2 2357 3800" /mobile_element_type="transposon:TIR/hAT" mobile_element 22353592..22353664 /note="source:CACAO_M_S_E89272_F5_scaffold_8 10937 11009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22353604..22355980) /note="source:CACAO_M_E4753_F17_scaffold_2 12432 14830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22355981..22359423 /note="source:CACAO_M_E22895_F323_scaffold_3 1 3443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22359425..22359951 /note="source:INTACT694_F17_scaffold_5-int 2433 2967" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22360304..22364674 /locus_tag="TCM_014427" /note="dbxref CacaoGD:Thecc1EG014427" mRNA join(22360304..22360608,22362426..22362553, 22363411..22363609,22363675..22364674) /locus_tag="TCM_014427" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma14g38010.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS join(22360398..22360608,22362426..22362553, 22363411..22363609,22363675..22364009) /locus_tag="TCM_014427" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22204.1" /db_xref="Phytozome:Glyma14g38010.1" /translation="MELSSQTLKIIKGERQWWEDMKWNDAEWGNRPDYLMHILSLLDK EKDAMTQLAEDRDLFEVTMQNEGQQLGNSISFAYESTISMFSSYFTIPPAPELRPAKL SDPPPLMNAFNVLQSPFSGELAAVSSNQQSNTGNNQQSTIGREENNSSDVSCLSIAPP KPLFYFINDISTFSKHNSNLLNNLLDLFKFRARLQARSFEEVAKQSQSKGNLQANYGN YYKQYSHLVKSRKSDDAYSWRCIGIKGLIGNRRRSFYKCARPGFPATKSVDRSLDGQI TEIIHKARHNHPES" mobile_element complement(22361597..22361647) /note="source:scaffold_3_CACTA_0396 891 941" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22367282..22367403) /note="source:CACAO_M_E34447_F4_scaffold_5 1000 1145" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22370268..22375186 /note="source:scaffold_3_CACTA_0392 1 4919" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22375191..22375314) /note="source:CACAO_M_E42959_F4_scaffold_5 1007 1148" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22377451..22383153 /note="source:CACAO_M_S_E32470_F28_scaffold_3 1 5703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22387122..22387199) /note="source:scaffold_4_CACTA_0502 2153 2230" /mobile_element_type="transposon:TIR/CACTA" gene complement(22388266..22392109) /locus_tag="TCM_014432" /note="dbxref CacaoGD:Thecc1EG014432" mRNA complement(join(22388266..22390613,22390773..22392109)) /locus_tag="TCM_014432" /product="S-domain-2 5, putative" /inference="alignment:exonerate- protein:2:ricco:29636.m000745.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001779t1" /inference="similar to AA sequence:ricco:29636.m000745" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2463t1" CDS complement(join(22389207..22390613,22390773..22391651)) /locus_tag="TCM_014432" /note="dbxref ricco:29636.m000745; paralog of Thecc1EG001779t1" /codon_start=1 /product="S-domain-2 5, putative" /protein_id="EOY22205.1" /db_xref="TAIR:AT4G32300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H546" /translation="MTIGRNTCSYFLIILLILLISLSLLISAEIVDYPSSVDFPNSWR NIPSSDLSFPEAAGVRPILVNGMFVCGFSCSFVDDSCLFAVSIFKTSYDDSASFSPQV VWSANRNNPIGLGAILQLTREGRLILQDDNGAVVWSPNTVGKPVSRLNLTAEGNLMLF DKTNNMAWQSFAHPTDSLVLGQRLVTGQKLRASVSTSNSSDGSYALAITDGGFTAYRE ADPSRIYYYRYLDEEMNTGKLYAEFQSGRFGSFIVSDSANFIQLGSDGHLKAYEWNEW KWVGVDLLDIDRCDYPLSLLELRDTEYIRNQYNRIFSGITSKEDCKQACLKNCSCQAA IFFDQYSSCYLISEVFSFRMTASNFNPPLISTFMKVQNNPIAENSNKNHSLPNLPKRR RKDIVVILGSTLGAIFGVFLICIFLFLRIKKGFKEVEEDYLDYISGMPTRFSYEELKN VTKNFSNKLGEGGFGSVFQGTLPSGSEVAVKHLDGFGPVKKSFIAEVQTIGSIHHFNL VSLVGFCAEKFSRLLVYEYMPNGSLDRWIFNKIPELALGWQIRKKIILDIAKGLAYLH EECNQKIIHLDIKPQNILLDENFNAKVSDFGLSKLIGRDQSQVITTMRGTPGYMAPEW LSSVITEKADVYSFGIVVLEILCGRKNVDGSQQEEDRHLLGVFSRKQEEGQLLDLVDN CSDDMQSNAVEVVEMMKVAAWCLQTEYSRRPSMSTVVKVFEGSVDVAGNLKDNFLNEL TPEALRTFASTVSPSTLSGPR" gene complement(22391960..22405203) /locus_tag="TCM_014433" /note="dbxref CacaoGD:Thecc1EG014433" mRNA complement(join(22391960..22392865,22393711..22393854, 22393967..22394054,22394278..22394383,22395347..22395501, 22397690..22397759,22398865..22399031,22399851..22399918, 22400357..22400460,22400538..22400708,22403095..22403232, 22403781..22403964,22404629..22405203)) /locus_tag="TCM_014433" /product="Signal peptide peptidase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03620.1" /inference="similar to AA sequence:frave:gene26164" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc998t8" CDS complement(join(22392635..22392865,22393711..22393854, 22393967..22394054,22394278..22394383,22395347..22395501, 22397690..22397759,22398865..22399031,22399851..22399918, 22400357..22400460,22400538..22400708,22403095..22403232, 22403781..22403964,22404629..22405072)) /locus_tag="TCM_014433" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene26164" /codon_start=1 /product="Signal peptide peptidase isoform 1" /protein_id="EOY22206.1" /db_xref="TAIR:AT1G73990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE30" /translation="MSKLLLFHTAHSTPRIHPRTFTSILSRPLSVPSLSKCHSPSSLF PSISSPALHPHPHLQRQNFSFSYSFSTRAFDDSSSSAETQNEKEEKVGSQSGEKFETE EYPSGEVEYEKMSGWRSFVVKFKMLIAFPWERVRKGSVLTMKLRGQISDQLKSRFSSG LSLPQICENFVKAAYDPRISGVYLHMEPLNCGWGKVEEIRRHILNFKKSGKFIIAYIP ACGEKEYYLACACEEIYAPPSAYFSLYGLTVQASFLGGVFEKIGIEPQVQRIGKYKSA GDQLTRKTMSEENCEMLTSLLDNIYGNWLDVVSSSKGKKREDVENFINEGIYKVEKLK EEGLITNIHYDDQVISMLKERLGVPKDKNLLMVDYRKYSKVRKWTLGLAGGRDQIAVI RASGSISRVRSPLSAPSSGIIAEQINEKIRSVRESKRYKAAIIRIDSPGGDALASDLM WREIRLLAESKPVIASMSDVAASGGYYMAMAAGTIVAENLTLTGSIGVVTGKFNLGKL YEKIGFNKEVISRGRYAELFAAEQRPLRLDEAELFAKSAQNAYKQFRDKAAFSRSMPV EKMEEVAQGRVWAGRDAASRGLVDAIGGLSRAIAIAKHRANIPQDRKVTLVELSRPSP TLPEILSGIGNSIVGVDGTLKEVLQELTFSDGVQARMDGIVFQRLEGLSNATPLFSLI KDYLSSL" mRNA complement(join(<22393692..22393854,22393967..22394054, 22394278..22394386,22395347..22395501,22397690..22397759, 22398865..22399031,22399851..22399918,22400357..22400460, 22400538..22400708,22403095..22403232,22403781..22403964, 22404629..22405141)) /locus_tag="TCM_014433" /product="Signal peptide peptidase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03620.1" /inference="similar to AA sequence:frave:gene26164" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4830t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc998t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4830t2" CDS complement(join(<22393693..22393854,22393967..22394054, 22394278..22394386,22395347..22395501,22397690..22397759, 22398865..22399031,22399851..22399918,22400357..22400460, 22400538..22400708,22403095..22403232,22403781..22403964, 22404629..22405072)) /locus_tag="TCM_014433" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene26164" /codon_start=1 /product="Signal peptide peptidase isoform 2" /protein_id="EOY22207.1" /db_xref="TAIR:AT1G73990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE30" /translation="MSKLLLFHTAHSTPRIHPRTFTSILSRPLSVPSLSKCHSPSSLF PSISSPALHPHPHLQRQNFSFSYSFSTRAFDDSSSSAETQNEKEEKVGSQSGEKFETE EYPSGEVEYEKMSGWRSFVVKFKMLIAFPWERVRKGSVLTMKLRGQISDQLKSRFSSG LSLPQICENFVKAAYDPRISGVYLHMEPLNCGWGKVEEIRRHILNFKKSGKFIIAYIP ACGEKEYYLACACEEIYAPPSAYFSLYGLTVQASFLGGVFEKIGIEPQVQRIGKYKSA GDQLTRKTMSEENCEMLTSLLDNIYGNWLDVVSSSKGKKREDVENFINEGIYKVEKLK EEGLITNIHYDDQVISMLKERLGVPKDKNLLMVDYRKYSKVRKWTLGLAGGRDQIAVI RASGSISRVRSPLSAPSSGIIAEQINEKIRSVRESKRYKAAIIRIDSPGGDALASDLM WREIRLLAESKPVIASMSDVAASGGYYMAMAAGTIVAENLTLTGSIGVVTAGKFNLGK LYEKIGFNKEVISRGRYAELFAAEQRPLRLDEAELFAKSAQNAYKQFRDKAAFSRSMP VEKMEEVAQGRVWAGRDAASRGLVDAIGGLSRAIAIAKHRANIPQDRKVSSLLF" mRNA complement(join(22393964..22394054,22394278..22394383, 22395252..22395501,22397690..22397759,22398865..22399031, 22399851..22399918,22400357..22400460,22400538..22400708, 22403095..22403232,22403781..22403964, 22404629..>22405066)) /locus_tag="TCM_014433" /product="Signal peptide peptidase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s03620.1" /inference="similar to AA sequence:frave:gene26164" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc998t8; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc998t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4830t2" CDS complement(join(22395330..22395501,22397690..22397759, 22398865..22399031,22399851..22399918,22400357..22400460, 22400538..22400708,22403095..22403232,22403781..22403964, 22404629..>22405066)) /locus_tag="TCM_014433" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene26164" /codon_start=1 /product="Signal peptide peptidase isoform 3" /protein_id="EOY22208.1" /db_xref="TAIR:AT1G73990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IE30" /translation="KLLLFHTAHSTPRIHPRTFTSILSRPLSVPSLSKCHSPSSLFPS ISSPALHPHPHLQRQNFSFSYSFSTRAFDDSSSSAETQNEKEEKVGSQSGEKFETEEY PSGEVEYEKMSGWRSFVVKFKMLIAFPWERVRKGSVLTMKLRGQISDQLKSRFSSGLS LPQICENFVKAAYDPRISGVYLHMEPLNCGWGKVEEIRRHILNFKKSGKFIIAYIPAC GEKEYYLACACEEIYAPPSAYFSLYGLTVQASFLGGVFEKIGIEPQVQRIGKYKSAGD QLTRKTMSEENCEMLTSLLDNIYGNWLDVVSSSKGKKREDVENFINEGIYKVEKLKEE GLITNIHYDDQVISMLKERLGVPKDKNLLMVDYRKYSKVRKWTLGLAGGRDQIAVIRA SGSISRVRSPLSAPSSGIIAEQINEKIRSVRESKRYKAAIIRIDSPGGDALASDLMWR EIRLLAESKPVIASMSDVAASGGYYMAMAAGTIVAENLTLTGSIGVVTGEPTL" gene 22408343..22421929 /locus_tag="TCM_014434" /note="dbxref CacaoGD:Thecc1EG014434" mRNA join(22408343..22408480,22415343..22415415, 22415806..22416095,22416208..22416299,22416393..22416461, 22417753..22417820,22417911..22417965,22419463..22419585, 22420435..22420520,22421055..22421929) /locus_tag="TCM_014434" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" mobile_element 22408755..22410600 /note="source:CACAO_M_E22896_F4_scaffold_3 1 1846" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(22411003..22411773) /locus_tag="TCM_014435" /note="dbxref CacaoGD:Thecc1EG014435" mRNA complement(join(22411003..22411380,22411444..22411773)) /locus_tag="TCM_014435" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage" CDS complement(join(22411226..22411380,22411444..22411555)) /locus_tag="TCM_014435" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22210.1" /translation="MASWAWVLWPKNNLLTLDIVREPRAAMLLDKPKKTDKWNWREVG IGGVLKDDNDTVRIVFSKCIKAVNANLAKELVFREAMTIWAPFS" CDS join(22415351..22415415,22415806..22416095, 22416208..22416299,22416393..22416461,22417753..22417820, 22417911..22417965,22419463..22419585,22420435..22420520, 22421055..22421214) /locus_tag="TCM_014434" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22209.1" /translation="MALNSTLKSFTLQRESYISSHITNFEHRFTIFPDVLIDNWSYND DFHNVHIKPSSNKFGSSSNSSIALPQTSIDASSHSDIKSNSSNFFCEHIETQNSPILH LLDHYTTSNSSPIPRKTTSQKAITKSLTNLLEPYTYHQAIQHVHWQKVYKWEPKKGIK QGLWLKDIVKGQTKVAFSTGEVGAYKDGNGYPITRYHPMGTRYLNLIIFFKLYYQTPL NYIEVDNHFIRENVIHGIIAARYIHASSRVHKWQICADEIKVFFFMENNIVTLRGWNE LRGARPHYTRQSSKAIPPIFIRCRQDIPCVNQLVVPHDRKIVENELQTILVLFYHILP F" mobile_element 22417794..22418743 /note="source:CACAO_MITE_S250_scaffold_10 2 946" /mobile_element_type="transposon:TIR/MITE" mobile_element 22418747..22419474 /note="source:scaffold_4_CACTA_0482 16820 17504" /mobile_element_type="transposon:TIR/CACTA" gene complement(22422959..22423983) /locus_tag="TCM_014436" /note="dbxref CacaoGD:Thecc1EG014436" mRNA complement(22422959..22423983) /locus_tag="TCM_014436" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06520.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15792t00001" CDS complement(22423020..22423505) /locus_tag="TCM_014436" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22211.1" /translation="MEPSKILGGTEECHSSESGWTMYIGSPIQGGDDDDDDGHSDADA YAANYGGHADETEINHEADSDDSMASDASSGPSHQGHRYGNMEEGHGTSHLNDEVEGE GNYYLDKEAKKSLEKQKLGMKKKEDKEDQKERMTLKAKGAATPRSGSKVRKSIWLGKR K" mobile_element 22427886..22428668 /note="source:CACAO_M_S_E32591_F276_scaffold_4 1 774" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22428754..22434140 /note="source:INTACT622_F276_scaffold_7-int 2223 7623" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22435399..22438544 /note="source:INTACT622_F276_scaffold_7-int 4420 7584" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(22440353..22441105) /locus_tag="TCM_014438" /note="dbxref CacaoGD:Thecc1EG014438" mRNA complement(22440353..22441105) /locus_tag="TCM_014438" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(22440680..22440973) /locus_tag="TCM_014438" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22212.1" /translation="MSTSGSSTPGRGLLPWNSPIPYVFGGLFIIFGIIAVALLVLACS PQRPSPEFPSGKEDKYKERIQASATLQPKIVVIMAGDHLPTYIAKPCPRIPPI" mobile_element complement(22441053..22441105) /note="source:CACAO_M_E42395_F3_scaffold_5 5953 6005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22441060..22441116) /note="source:CACAO_M_E42343_F106_scaffold_5 6708 6763" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22442574..22443570 /note="source:MITE_hAT_10 4 1014" /mobile_element_type="transposon:TIR/MITE" mobile_element 22443576..22444669 /note="source:MITE_hAT_3 1 1094" /mobile_element_type="transposon:TIR/MITE" mobile_element 22451782..22453580 /note="source:INTACT445_F217_scaffold_8-int 1 1794" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 22454740..22466945 /locus_tag="TCM_014439" /note="dbxref CacaoGD:Thecc1EG014439" mRNA join(22454740..22455087,22457262..22457491, 22457654..22457809,22458053..22458238,22459173..22459354, 22460120..22460191,22460325..22460499,22466776..22466945) /locus_tag="TCM_014439" /product="LAG1 longevity assurance, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010169001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011380t1" /inference="similar to AA sequence:ricco:30174.m009049" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1184t5" mRNA join(22454768..22455087,22457262..22457491, 22457654..22457809,22458053..22458238,22459173..22459354, 22460120..22460341,22460440..22460592) /locus_tag="TCM_014439" /product="LAG1 longevity assurance, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010169001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011380t1" /inference="similar to AA sequence:ricco:30174.m009049" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1184t3; alternateUTRof:Thecc1EG014439t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1184t5" CDS join(22454770..22455087,22457262..22457491, 22457654..22457809,22458053..22458238,22459173..22459354, 22460120..22460148) /locus_tag="TCM_014439" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30174.m009049; paralog of Thecc1EG011380t1" /codon_start=1 /product="LAG1 longevity assurance, putative isoform 1" /protein_id="EOY22213.1" /db_xref="TAIR:AT1G13580.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NQI8" /translation="MGHLTCALFHRKKEHGFNSEIVKKKHGCLSQSQILLISPLQILS ILFSLSMYSKFFRYKQMGLFGLSNSINWESESYPELNDFLLLPFFALFFPTVRFFLNK LVFENLARRLVLGKAHTLQDVHTHDSRKKLNKFKESAWKCVYFLSSECLTIYVSYGEP WFTNTKYFWEGPGEQVWPDQKIKLKLKGLYMYVGGFYTYSVFALLFWETRRSDFVVSM VHHIASIILIVLSYICRFARVGSVAFALHDGSDVFLEIGKMSKYSGFEWPASVSFILF ALSWTILRLILFPFWVIWSTSYEALLTLDMEKHMVDGSIYYYLFNTLLFSLLVLHIYW WVLIIRVIIRQIHSGGQVDDVRSDSEDDEHDD" CDS join(22454770..22455087,22457262..22457491, 22457654..22457809,22458053..22458238,22459173..22459354, 22460120..22460148) /locus_tag="TCM_014439" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30174.m009049; paralog of Thecc1EG011380t1" /codon_start=1 /product="LAG1 longevity assurance, putative isoform 1" /protein_id="EOY22214.1" /db_xref="TAIR:AT1G13580.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NQI8" /translation="MGHLTCALFHRKKEHGFNSEIVKKKHGCLSQSQILLISPLQILS ILFSLSMYSKFFRYKQMGLFGLSNSINWESESYPELNDFLLLPFFALFFPTVRFFLNK LVFENLARRLVLGKAHTLQDVHTHDSRKKLNKFKESAWKCVYFLSSECLTIYVSYGEP WFTNTKYFWEGPGEQVWPDQKIKLKLKGLYMYVGGFYTYSVFALLFWETRRSDFVVSM VHHIASIILIVLSYICRFARVGSVAFALHDGSDVFLEIGKMSKYSGFEWPASVSFILF ALSWTILRLILFPFWVIWSTSYEALLTLDMEKHMVDGSIYYYLFNTLLFSLLVLHIYW WVLIIRVIIRQIHSGGQVDDVRSDSEDDEHDD" mobile_element complement(22461811..22462040) /note="source:INTACT135F_F90_scaffold_2-int 13778 14008" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(22462069..22463359) /locus_tag="TCM_014440" /note="dbxref CacaoGD:Thecc1EG014440" mRNA complement(22462069..22463359) /locus_tag="TCM_014440" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(22462843..22463058) /locus_tag="TCM_014440" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22215.1" /translation="MTRSDQIWHAPLGKRNLAALSWGVPISCSSGNAQGVCLTLFLRS AISAPLGSADLALLKECQKNTATSHPR" gene complement(22466622..22469298) /locus_tag="TCM_014441" /note="dbxref CacaoGD:Thecc1EG014441" mRNA complement(join(22466622..22467464,22467828..22467911, 22468258..22469213)) /locus_tag="TCM_014441" /product="JHL10I11.10 protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30174.m009047" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019107t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s14410.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2473t1_C1" mRNA complement(join(22466941..22467464,22468258..22469298)) /locus_tag="TCM_014441" /product="JHL10I11.10 protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30174.m009047" /inference="alignment:exonerate- protein:2:ricco:30174.m009048" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019107t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s14410.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2162t5_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2473t1_C1" CDS complement(join(22467117..22467464,22468258..22469025)) /locus_tag="TCM_014441" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019107t1" /codon_start=1 /product="JHL10I11.10 protein, putative isoform 2" /protein_id="EOY22217.1" /db_xref="Phytozome:POPTR_0017s14410.1" /db_xref="TAIR:AT5G15850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NU54" /translation="MVTYQANWARTCDTCQAAACTLYCHTDSSYLCNDCDKRIHAANP MASSHQRVWICAVCENAAAAVTCRADAASLCIKCDIEIHSVNPLARRHIRVPIPPLSG LACSSSSTHQVELPDPMFDTENEIAAGTINEEIDENETDCWLLLEPDSTDNQTMSGFT YGEQVDEYMDVRDTCTEYRCQEQCSDQQQLLCVNNPEDSGSDIDVPVQTFESKKQSQQ QEKQLQRQTHQQLQGIYFNTEHRGSKAAFMYTPSSTLSVPLPLITAGILPNATSNIPS TYTGFPNGATDLFPYPLPLMPLQFTPMNREAKVLRYREKRKARKFEKKIRYASRKAYA ETRPRVKGRFARKTDMEIEDDQLFSKEDYGYCIVPSL" CDS complement(join(22467117..22467464,22467828..22467911, 22468258..22469025)) /locus_tag="TCM_014441" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019107t1" /codon_start=1 /product="JHL10I11.10 protein, putative isoform 1" /protein_id="EOY22216.1" /db_xref="Phytozome:POPTR_0017s14410.2" /db_xref="TAIR:AT5G15850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NU54" /translation="MVTYQANWARTCDTCQAAACTLYCHTDSSYLCNDCDKRIHAANP MASSHQRVWICAVCENAAAAVTCRADAASLCIKCDIEIHSVNPLARRHIRVPIPPLSG LACSSSSTHQVELPDPMFDTENEIAAGTINEEIDENETDCWLLLEPDSTDNQTMSGFT YGEQVDEYMDVRDTCTEYRCQEQCSDQQQLLCVNNPEDSGSDIDVPVQTFESKKQSQQ QEKQLQRQTHQQLQGIYFNTEHRGSKAAFMYTPSSTLSARGAQPLHQCSRDFPKSVNE EQQTNGIYVPLPLITAGILPNATSNIPSTYTGFPNGATDLFPYPLPLMPLQFTPMNRE AKVLRYREKRKARKFEKKIRYASRKAYAETRPRVKGRFARKTDMEIEDDQLFSKEDYG YCIVPSL" gene complement(22469552..22476026) /locus_tag="TCM_014442" /note="dbxref CacaoGD:Thecc1EG014442" mRNA complement(join(22469552..22469654,22471128..22471734, 22473043..22473167,22473588..22473773,22474065..22474208, 22474430..22474572,22475565..22475984)) /locus_tag="TCM_014442" /product="Serine/threonine protein kinase 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06550.1" /inference="similar to AA sequence:ricco:30174.m009046" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc876t7" CDS complement(join(22471509..22471734,22473043..22473167, 22473588..22473773,22474065..22474208,22474430..22474572, 22475565..22475778)) /locus_tag="TCM_014442" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30174.m009046" /codon_start=1 /product="Serine/threonine protein kinase 3 isoform 1" /protein_id="EOY22218.1" /db_xref="TAIR:AT5G08160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L9Q3" /translation="MGCTFSGLNALYDAVNGGGDVWINDNRFRIVRQLGEGGFAYVFL VKEVMSDSSSASASGLAKKVKDPSHLSDDGTYAMKKVLIQNNEQLQLVREEIRVSSLF SHPHLLPLLDHAIIAVKPTQEGSWNHEAYLLFPVHLDGTLLDNSTAMKAKKEFFSTSD VLQIFRQLCAGLKHMHSLEPPYAHNDVKPGNVLLTRRKGQPPLSILMDFGSARPARKQ IHSRSEALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYAIMYGVSP FEYALGESGGSLQLAIVNAQIKWPAGPKPPYPEALHQFVTWMLQPQAAVRPFIDDIII HVDKLISKFSQ" mRNA complement(join(22471711..22471734,22472680..22473167, 22473588..22473773,22474065..22474208,22474430..22474572, 22475565..22476026)) /locus_tag="TCM_014442" /product="Serine/threonine protein kinase 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06550.1" /inference="similar to AA sequence:ricco:30174.m009046" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc871t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc871t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc876t7" mRNA complement(join(22472264..22472883,22473043..22473167, 22473588..22473773,22474065..22474208,22474430..22474572, 22475565..22475914)) /locus_tag="TCM_014442" /product="Serine/threonine protein kinase 3 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06550.1" /inference="similar to AA sequence:ricco:30174.m009046" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc876t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc871t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc876t7" CDS complement(join(22472856..22472883,22473043..22473167, 22473588..22473773,22474065..22474208,22474430..22474572, 22475565..22475778)) /locus_tag="TCM_014442" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30174.m009046" /codon_start=1 /product="Serine/threonine protein kinase 3 isoform 3" /protein_id="EOY22220.1" /db_xref="TAIR:AT5G08160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L9Q3" /translation="MGCTFSGLNALYDAVNGGGDVWINDNRFRIVRQLGEGGFAYVFL VKEVMSDSSSASASGLAKKVKDPSHLSDDGTYAMKKVLIQNNEQLQLVREEIRVSSLF SHPHLLPLLDHAIIAVKPTQEGSWNHEAYLLFPVHLDGTLLDNSTAMKAKKEFFSTSD VLQIFRQLCAGLKHMHSLEPPYAHNDVKPGNVLLTRRKGQPPLSILMDFGSARPARKQ IHSRSEALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYAIIYWFPS SLI" CDS complement(join(22473039..22473167,22473588..22473773, 22474065..22474208,22474430..22474572,22475565..22475778)) /locus_tag="TCM_014442" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30174.m009046" /codon_start=1 /product="Serine/threonine protein kinase 3 isoform 2" /protein_id="EOY22219.1" /db_xref="TAIR:AT5G08160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L9Q3" /translation="MGCTFSGLNALYDAVNGGGDVWINDNRFRIVRQLGEGGFAYVFL VKEVMSDSSSASASGLAKKVKDPSHLSDDGTYAMKKVLIQNNEQLQLVREEIRVSSLF SHPHLLPLLDHAIIAVKPTQEGSWNHEAYLLFPVHLDGTLLDNSTAMKAKKEFFSTSD VLQIFRQLCAGLKHMHSLEPPYAHNDVKPGNVLLTRRKGQPPLSILMDFGSARPARKQ IHSRSEALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYAIM" gene complement(22476589..22486079) /locus_tag="TCM_014443" /note="dbxref CacaoGD:Thecc1EG014443" mRNA complement(join(22476589..22476945,22480488..22480646, 22481098..22481330,22481992..22482126,22483401..22483479, 22483586..22483641,22484183..22484267,22484604..22484717, 22485568..22485986)) /locus_tag="TCM_014443" /product="Porphyromonas-type peptidyl-arginine deiminase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06560.1" /inference="similar to AA sequence:ricco:30174.m009045" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4883t1; inference alignment:Newbler:10:TSA:cgbaB_g08189t00001" mRNA complement(join(22476671..22476945,22480488..22480646, 22481098..22481330,22483401..22483479,22483586..22483641, 22484183..22484267,22484604..22484717,22485568..22485801)) /locus_tag="TCM_014443" /product="Porphyromonas-type peptidyl-arginine deiminase family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06560.1" /inference="similar to AA sequence:ricco:30174.m009045" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc74t4; inference alignment:Newbler:10:TSA:cgbaB_g08189t00001" mRNA complement(join(22476671..22476945,22480488..22480646, 22481098..22481330,22483401..22483479,22483586..22483641, 22484183..22484267,22484418..22484507,22484604..22484717, 22485568..22485801)) /locus_tag="TCM_014443" /product="Porphyromonas-type peptidyl-arginine deiminase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06560.1" /inference="similar to AA sequence:ricco:30174.m009045" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc74t11; inference alignment:Newbler:10:TSA:cgbaB_g08189t00001" mRNA complement(join(22476817..22476945,22480488..22480646, 22481098..22481330,22481992..22482126,22483401..22483479, 22483586..22483641,22484183..22484267,22484418..22484507, 22484604..22484717,22485568..22486079)) /locus_tag="TCM_014443" /product="Porphyromonas-type peptidyl-arginine deiminase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06560.1" /inference="similar to AA sequence:ricco:30174.m009045" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08189t00001" CDS complement(join(22476862..22476945,22480488..22480646, 22481098..22481330,22483401..22483479,22483586..22483641, 22484183..22484267,22484604..22484717,22485568..22485654)) /locus_tag="TCM_014443" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30174.m009045" /codon_start=1 /product="Porphyromonas-type peptidyl-arginine deiminase family protein isoform 5" /protein_id="EOY22225.1" /db_xref="TAIR:AT5G08170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWW7" /translation="MEMKGTPSQLGYHMPAEWEPHFQCWMGWPERPDNWRDDAVHGQH VFAKVATAISKFEFVTVCASAAQFVVTKREPSSDSPEQKIAGIDWNFNSWGGVDDGCY KDWSLDLYVARKILGIERFPRFSHTMILEGGSIHVDGEGDDDTNGHIDNMCCFAKPGV VLLSWTDDETDPQYERSMEAFSILSNATDASGRKLQIIKLHVPGPLFMTDEEAAGVAQ DGEAKPRLPGTRLAASYVNFYIANGGIITPQFGDKKWDDEAVRVLSQAFPDYEVVRIE GAREIVLGGGNIHCITQQQPAT" CDS complement(join(22476862..22476945,22480488..22480646, 22481098..22481330,22481992..22482126,22483401..22483479, 22483586..22483641,22484183..22484267,22484604..22484717, 22485568..22485654)) /locus_tag="TCM_014443" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30174.m009045" /codon_start=1 /product="Porphyromonas-type peptidyl-arginine deiminase family protein isoform 3" /protein_id="EOY22223.1" /db_xref="TAIR:AT5G08170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWW7" /translation="MEMKGTPSQLGYHMPAEWEPHFQCWMGWPERPDNWRDDAVHGQH VFAKVATAISKFEFVTVCASAAQFVVTKREPSSDSPEQKIAGIDWNFNSWGGVDDGCY KDWSLDLYVARKILGIERFPRFSHTMILEGGSIHVDGEGTCLTTEECLLNKNRNPNMT KEQIENELEAYLGVKKVIWLPRGLYGDDDTNGHIDNMCCFAKPGVVLLSWTDDETDPQ YERSMEAFSILSNATDASGRKLQIIKLHVPGPLFMTDEEAAGVAQDGEAKPRLPGTRL AASYVNFYIANGGIITPQFGDKKWDDEAVRVLSQAFPDYEVVRIEGAREIVLGGGNIH CITQQQPAT" CDS complement(join(22476862..22476945,22480488..22480646, 22481098..22481330,22483401..22483479,22483586..22483641, 22484183..22484267,22484418..22484507,22484604..22484717, 22485568..22485654)) /locus_tag="TCM_014443" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30174.m009045" /codon_start=1 /product="Porphyromonas-type peptidyl-arginine deiminase family protein isoform 4" /protein_id="EOY22224.1" /db_xref="TAIR:AT5G08170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWW7" /translation="MEMKGTPSQLGYHMPAEWEPHFQCWMGWPERPDNWRDDAVHGQH VFAKVATAISKFEFVTVCASAAQWANARSQLPPNIRVVEMSMNDSWFRDTGPTFVVTK REPSSDSPEQKIAGIDWNFNSWGGVDDGCYKDWSLDLYVARKILGIERFPRFSHTMIL EGGSIHVDGEGDDDTNGHIDNMCCFAKPGVVLLSWTDDETDPQYERSMEAFSILSNAT DASGRKLQIIKLHVPGPLFMTDEEAAGVAQDGEAKPRLPGTRLAASYVNFYIANGGII TPQFGDKKWDDEAVRVLSQAFPDYEVVRIEGAREIVLGGGNIHCITQQQPAT" CDS complement(join(22476862..22476945,22480488..22480646, 22481098..22481330,22481992..22482126,22483401..22483479, 22483586..22483641,22484183..22484267,22484418..22484507, 22484604..22484717,22485568..22485654)) /locus_tag="TCM_014443" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30174.m009045" /codon_start=1 /product="Porphyromonas-type peptidyl-arginine deiminase family protein isoform 1" /protein_id="EOY22221.1" /db_xref="TAIR:AT5G08170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWW7" /translation="MEMKGTPSQLGYHMPAEWEPHFQCWMGWPERPDNWRDDAVHGQH VFAKVATAISKFEFVTVCASAAQWANARSQLPPNIRVVEMSMNDSWFRDTGPTFVVTK REPSSDSPEQKIAGIDWNFNSWGGVDDGCYKDWSLDLYVARKILGIERFPRFSHTMIL EGGSIHVDGEGTCLTTEECLLNKNRNPNMTKEQIENELEAYLGVKKVIWLPRGLYGDD DTNGHIDNMCCFAKPGVVLLSWTDDETDPQYERSMEAFSILSNATDASGRKLQIIKLH VPGPLFMTDEEAAGVAQDGEAKPRLPGTRLAASYVNFYIANGGIITPQFGDKKWDDEA VRVLSQAFPDYEVVRIEGAREIVLGGGNIHCITQQQPAT" mRNA complement(join(<22476916..22476945,22480488..22480646, 22481098..22481330,22481992..22482126,22483401..22483479, 22483586..22483641,22484183..22484267,22484418..22484507, 22484604..22484717,22484847..22484922)) /locus_tag="TCM_014443" /product="Porphyromonas-type peptidyl-arginine deiminase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06560.1" /inference="similar to AA sequence:ricco:30174.m009045" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc119t1; inference alignment:Newbler:10:TSA:cgbaB_g08189t00001" CDS complement(join(<22476916..22476945,22480488..22480646, 22481098..22481330,22481992..22482126,22483401..22483479, 22483586..22483641,22484183..22484267,22484418..22484507, 22484604..22484717,22484847..22484852)) /locus_tag="TCM_014443" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30174.m009045" /codon_start=1 /product="Porphyromonas-type peptidyl-arginine deiminase family protein isoform 2" /protein_id="EOY22222.1" /db_xref="TAIR:AT5G08170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWW7" /translation="MLERPDNWRDDAVHGQHVFAKVATAISKFEFVTVCASAAQWANA RSQLPPNIRVVEMSMNDSWFRDTGPTFVVTKREPSSDSPEQKIAGIDWNFNSWGGVDD GCYKDWSLDLYVARKILGIERFPRFSHTMILEGGSIHVDGEGTCLTTEECLLNKNRNP NMTKEQIENELEAYLGVKKVIWLPRGLYGDDDTNGHIDNMCCFAKPGVVLLSWTDDET DPQYERSMEAFSILSNATDASGRKLQIIKLHVPGPLFMTDEEAAGVAQDGEAKPRLPG TRLAASYVNFYIANGGIITPQFGDKKWDDEAVRVLSQAFPDYEVVRIEGAREI" mobile_element 22478614..22479112 /note="source:CACAO_M_S_E32472_F118_scaffold_3 1 499" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22486133..22489146 /locus_tag="TCM_014445" /note="dbxref CacaoGD:Thecc1EG014445" mRNA join(22486133..22486436,22486511..22486599, 22487832..22487921,22488004..22488182,22488846..22489146) /locus_tag="TCM_014445" /product="Ribonuclease H protein" /inference="similar to AA sequence:frave:gene26170" /note="quality class is strong, express is strong, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4838t3" CDS join(22486212..22486436,22486511..22486599, 22487832..22487921,22488004..22488182,22488846..22488940) /locus_tag="TCM_014445" /note="dbxref frave:gene26170" /codon_start=1 /product="Ribonuclease H protein" /protein_id="EOY22226.1" /db_xref="TAIR:AT1G73980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9B9" /translation="MDGFAAKLGKCSSYRAELWGVLHSLRIAREKGFRRIWLQVDNKI VVQAITSSESHPCANSDLLNAIHGLLQLDWEIVALFCLMYHLQKSVQGCSMMYWEFVS QEWRSLLSSLKWLKILLLVLNHQGNILDFYEARCQLLAQKNDGSILVGVAGPSGAGKT LFTEKVLNFMPTIAVITMDHHYKDSNHFIDGYFDDVTCTQVRLENIIGWSIGLEGRFD DSWFKKD" mobile_element 22490997..22491136 /note="source:scaffold_7_CACTA_0795 2858 3014" /mobile_element_type="transposon:TIR/CACTA" gene 22492089..22501165 /locus_tag="TCM_014447" /note="dbxref CacaoGD:Thecc1EG014447" mRNA join(22492089..22492326,22493531..22493905, 22496258..22496372,22496574..22496769,22496923..22497036, 22497156..22497329,22498016..22498210,22499061..22499183, 22499251..22499363,22499576..22499696,22500087..22500359, 22500571..22501165) /locus_tag="TCM_014447" /product="Phosphoribulokinase / Uridine kinase family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008186001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011378t1" /inference="similar to AA sequence:ricco:30174.m009044" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04425t00001" mRNA join(22492181..22492326,22493536..22493905, 22496258..22496372,22496574..22496769,22496923..22497036, 22497156..22497329,22498016..22498210,22499061..22499183, 22499251..22499363,22499576..22499696,22500087..22500359, 22500571..22500790) /locus_tag="TCM_014447" /product="Phosphoribulokinase / Uridine kinase family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008186001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011378t1" /inference="similar to AA sequence:ricco:30174.m009044" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5036t1; alternateUTRof:Thecc1EG014447t1; inference alignment:Newbler:10:TSA:cgbaB_g04425t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc433t9" CDS join(22493566..22493905,22496258..22496372, 22496574..22496769,22496923..22497036,22497156..22497329, 22498016..22498210,22499061..22499183,22499251..22499363, 22499576..22499696,22500087..22500359,22500571..22500789) /locus_tag="TCM_014447" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30174.m009044; paralog of Thecc1EG011378t1" /codon_start=1 /product="Phosphoribulokinase / Uridine kinase family isoform 1" /protein_id="EOY22227.1" /db_xref="TAIR:AT1G73980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9B9" /translation="MAQDTSSAAESPRRRSGLLRDQVQLVKKKDSDRYEIVPIEDPLS FDKGFFIVIRACQLLAQKNDGLILIGVAGPSGAGKTVFTEKVLNFLPSIAVITMDNYN DASRIIDGNFDDPRLTDYDALLENIHGLKAGKPVQVPIYDFKSSSRTGYRTVEVPSSR IVIIEGIYALSEKLRPLLDLRVSITGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETV YPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRMVTVDQIKEVVSDEHKEH MEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVR LLGGLMALGYTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGRDRLFVKYVAE QLNLEGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDVVSSPKEALSRASADR RMKYLSRISQSYTNQRDKNLPKLTRLAINSTRFDGRAPELPSPLVNPGVVTQLSEQIS TLNERMDEFTARIEELNSKFSSRKVSASQQNLAVQAEASNGSGPTSLFVTGLGNGSLT GSLMPHSSSSSQLARESPLVEEVLLIARGQRQIMHQLDNLSNLLHEYWGGRSQRERTQ RTNRTIDVGTISVPLILTLAIGGLGVFLFRSPTSQK" CDS join(22493566..22493905,22496258..22496372, 22496574..22496769,22496923..22497036,22497156..22497329, 22498016..22498210,22499061..22499183,22499251..22499363, 22499576..22499696,22500087..22500359,22500571..22500789) /locus_tag="TCM_014447" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30174.m009044; paralog of Thecc1EG011378t1" /codon_start=1 /product="Phosphoribulokinase / Uridine kinase family isoform 1" /protein_id="EOY22228.1" /db_xref="TAIR:AT1G73980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9B9" /translation="MAQDTSSAAESPRRRSGLLRDQVQLVKKKDSDRYEIVPIEDPLS FDKGFFIVIRACQLLAQKNDGLILIGVAGPSGAGKTVFTEKVLNFLPSIAVITMDNYN DASRIIDGNFDDPRLTDYDALLENIHGLKAGKPVQVPIYDFKSSSRTGYRTVEVPSSR IVIIEGIYALSEKLRPLLDLRVSITGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETV YPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRMVTVDQIKEVVSDEHKEH MEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVR LLGGLMALGYTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGRDRLFVKYVAE QLNLEGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDVVSSPKEALSRASADR RMKYLSRISQSYTNQRDKNLPKLTRLAINSTRFDGRAPELPSPLVNPGVVTQLSEQIS TLNERMDEFTARIEELNSKFSSRKVSASQQNLAVQAEASNGSGPTSLFVTGLGNGSLT GSLMPHSSSSSQLARESPLVEEVLLIARGQRQIMHQLDNLSNLLHEYWGGRSQRERTQ RTNRTIDVGTISVPLILTLAIGGLGVFLFRSPTSQK" gene complement(22501125..22504110) /locus_tag="TCM_014448" /note="dbxref CacaoGD:Thecc1EG014448" mRNA complement(join(22501125..22501319,22501560..22501691, 22502385..22502490,22503557..22503626,22503851..22504110)) /locus_tag="TCM_014448" /product="Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042400" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400042400" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03075t00002" CDS complement(join(22501203..22501319,22501560..22501691, 22502385..22502490,22503557..22503626,22503851..22503986)) /locus_tag="TCM_014448" /codon_start=1 /product="Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein" /protein_id="EOY22229.1" /db_xref="Phytozome:PGSC0003DMP400042400" /db_xref="TAIR:AT5G08180.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LEY9" /translation="MGSDSEVEKTQQKEKERKKMLAVAPIAKPLAGKKLSKKTLKLVR RAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEEADIPYVYVPS KEDLATAGATKRPTCCVLVLTKPTKGELGPEDQEKIKADYSQIVADMCQWCEYKTRDF ALATSFPCSVTRYLACITNVPLRCFN" mobile_element complement(22504719..22504914) /note="source:INTACT383F_F354_scaffold_3-int 889 1089" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 22504972..22505130 /note="source:CACAO_PIF_E54_scaffold_3 8894 9034" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22505731..22505850) /note="source:scaffold_2_CACTA_0281 4744 4852" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22507160..22507914) /note="source:INTACT693_F28_scaffold_7-int 6775 7531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22507918..22508865) /note="source:CACAO_M_S_E99952_F128_scaffold_9 1723 2664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22511840..22514159 /note="source:INTACT61_F128_scaffold_2-int 1051 3328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22513895..22521114) /note="source:INTACT157_F155_scaffold_1-int 4043 11083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22519646..22524478 /note="source:INTACT61_F128_scaffold_2-int 8667 13474" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22524481..22525829) /note="source:CACAO_M_S_E66639_F28_scaffold_5 3566 4913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22525822..22527161 /note="source:INTACT458_F219_scaffold_7-int 14976 16365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22525830..22527325) /note="source:INTACT579_F10_scaffold_3-int 4315 5744" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22528118..22528630 /note="source:CACAO_on_E205_scaffold_7 4627 5144" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(22528186..22528654) /note="source:INTACT693_F28_scaffold_7-int 6221 6707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22528653..22528806) /note="source:INTACT505_F28_scaffold_3-int 17270 17423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22528772..22531898 /note="source:CACAO_M_S_E98983_F28_scaffold_8 3485 6623" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22533198..22535248 /locus_tag="TCM_014453" /note="dbxref CacaoGD:Thecc1EG014453" mRNA join(22533198..22533592,22533719..22533988, 22534094..22535248) /locus_tag="TCM_014453" /product="Calcium-dependent phosphotriesterase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008192001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014454t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008191001" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g08943t00001" CDS join(22533333..22533592,22533719..22533988, 22534094..22534568) /locus_tag="TCM_014453" /note="paralog of Thecc1EG014454t1" /codon_start=1 /product="Calcium-dependent phosphotriesterase superfamily protein, putative" /protein_id="EOY22230.1" /db_xref="Phytozome:GSVIVT01008191001" /db_xref="TAIR:AT1G74010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTG1" /translation="MATSIMRVHTLAAPLFSTFIFLLCFSSTVLSVSFSKIQLPPNAT GPEALAFVSGTGQFCTGIADGRILKYQGPTTGFVDFGFAAPNRSKSVCDGTDTANPKP VCGRPLGLALHHATNRLYVCDAFFGFGVLGPKGGQVTILSTGADGEPFRFCNAVDVHQ RTGDVYFTDSSAVYDIRQIETAISTNDSTGRLMKYDFKTEQVTVLFRNLSGAVGVAVD EEAKFVLVSEFIINRTIKIWLQGTKANKFEIINLQPMPDNIKRTASENFWLAAAMIKQ GTQSLVPIGQRINASGTVLQTVNFERWYGNKSISEVQEFNGLLHVASRLVNFIGVYKH " gene 22536707..22538409 /locus_tag="TCM_014454" /note="dbxref CacaoGD:Thecc1EG014454" mRNA join(22536707..22537299,22537470..22537739, 22537842..22538409) /locus_tag="TCM_014454" /product="Calcium-dependent phosphotriesterase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008192001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014453t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008191001" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13193t00001" CDS join(22537034..22537299,22537470..22537739, 22537842..22538316) /locus_tag="TCM_014454" /note="paralog of Thecc1EG014453t1" /codon_start=1 /product="Calcium-dependent phosphotriesterase superfamily protein, putative" /protein_id="EOY22231.1" /db_xref="Phytozome:GSVIVT01008191001" /db_xref="TAIR:AT1G74000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTG1" /translation="MHLMKMAYIISLREATLFSIFIFIFCSPSMVLSQFFSSIQLPPT AKGPESFAFELGTGRIYVGVDDGRILQYNGPATGFVDFGYTSGTRSKAVCDGATNPDL GPICGRPMGLGFHYASSQLYVCDAYVGLVALDSRGGLANLVSSSADGEPYRFCNGLDV HQLSGNVFFTDTSTVYDLRNASKGLTSNDSTGRLLRYDPNTKRVTVLLKNLTGPAGAA VSQDGTYVLISNFNSNTTMRYWLQGPRANTYDIISTQARPNNIQGTLAGDFWQAAAMV KQPTQSLVPIGQRISGLGIVTRTVNFEQWYGNNLISEVQEFGGALYVASRYVNFIGVY RF" gene complement(22539760..22543773) /locus_tag="TCM_014455" /note="dbxref CacaoGD:Thecc1EG014455" mRNA complement(join(22539760..22540058,22540237..22540346, 22540445..22540582,22541641..22541779,22541890..22541985, 22542747..22542866,22543308..22543365,22543466..22543773)) /locus_tag="TCM_014455" /product="Minichromosome instability 12-like, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008195001" /inference="similar to AA sequence:Phytozome:GSVIVT01008195001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8668t4" CDS complement(join(22540285..22540346,22540445..22540582, 22541641..22541779,22541890..22541985,22542747..22542866, 22543308..22543365,22543466..22543587)) /locus_tag="TCM_014455" /codon_start=1 /product="Minichromosome instability 12-like, putative" /protein_id="EOY22232.1" /db_xref="Phytozome:GSVIVT01008195001" /db_xref="TAIR:AT5G35520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N076" /translation="MEGSESEAIFDSLNLNPQLFINEALNTVDDLLNDGFDFYLQEAS TLLKIEGTERSQDLTKGVNYIRNMIQSSLDKRLAMWEKYCLRHCFTVPEGFSLSKNDE LPGSCSMVQDTLSDPDVDAELDSLRDKLTLVGAESDRLNSELKELERQSALSGHYTGL INEALQLYEDTSARDMFREMVQTATELRVKMQKLKTRQAERMEHARAERIYNSLTDYF TVNQEKGLANAKLDDLQEFLAELKKM" mobile_element 22543962..22546163 /note="source:CACAO_M_S_E17777_F2_scaffold_3 9496 11719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22547403..22547492) /note="source:INTACT433_F212_scaffold_1-int 3049 3136" /mobile_element_type="retrotransposon:LTR/Copia" gene 22547980..22555406 /locus_tag="TCM_014457" /note="dbxref CacaoGD:Thecc1EG014457" mRNA join(22547980..22548401,22550070..22550212, 22550615..22550777,22552188..22552388,22552528..22552643, 22555243..22555406) /locus_tag="TCM_014457" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008196001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018396t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06600.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b013968t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00610t00001" mRNA join(22547980..22548401,22550070..22550212, 22550615..22550777,22552188..22552388,22552528..22552811) /locus_tag="TCM_014457" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008196001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018396t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06600.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00610t00001" mRNA join(22548026..22548401,22550070..22550212, 22550615..22550765,22552188..22552388,22552528..22552723) /locus_tag="TCM_014457" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008196001" /inference="alignment:exonerate- protein:2:ricco:30174.m009040" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018396t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06600.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc868t11; inference alignment:Newbler:10:TSA:cgbaB_g00610t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc508t3" CDS join(22548182..22548401,22550070..22550212, 22550615..22550777,22552188..22552388,22552528..22552643, 22555243..22555284) /locus_tag="TCM_014457" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG018396t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY22234.1" /db_xref="Phytozome:POPTR_0015s06600.1" /db_xref="TAIR:AT1G18490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1G3U6" /translation="MFSKFQKATDKAMVFLQNRALSTLYIPKQKLHMAMNTTSPKVQL LFDLCKTTFTPSGLPSASPQPIRKLCSLLDTFGPADIGLKEESPDDDRGHGFFGLNRV ARWAQPITFLDIYECDSFTMCVFCFPTSSVIPLHDHPGMTVFSKVLYGSMHVKAYDWV EPVCIKESREPGYPQVRLARLAVDKVSTAPCGTSVLYPKTGGNLHCFTAVTPCAVLDV LAPPYREDIGRKCTYYIDYPYSTFGNGTEISNGKEEDYAWLAEIETPDDLYMREGVYV GPAIQWARIAELDKEELC" CDS join(22548182..22548401,22550070..22550212, 22550615..22550777,22552188..22552388,22552528..22552649) /locus_tag="TCM_014457" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG018396t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22233.1" /db_xref="Phytozome:POPTR_0015s06600.1" /db_xref="TAIR:AT1G18490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1G3U6" /translation="MFSKFQKATDKAMVFLQNRALSTLYIPKQKLHMAMNTTSPKVQL LFDLCKTTFTPSGLPSASPQPIRKLCSLLDTFGPADIGLKEESPDDDRGHGFFGLNRV ARWAQPITFLDIYECDSFTMCVFCFPTSSVIPLHDHPGMTVFSKVLYGSMHVKAYDWV EPVCIKESREPGYPQVRLARLAVDKVSTAPCGTSVLYPKTGGNLHCFTAVTPCAVLDV LAPPYREDIGRKCTYYIDYPYSTFGNGTEISNGKEEDYAWLAEIETPDDLYMREGVYV GPAIQV" CDS join(22548182..22548401,22550070..22550212, 22550615..22550765,22552188..22552388,22552528..22552649) /locus_tag="TCM_014457" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG018396t1" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY22235.1" /db_xref="Phytozome:POPTR_0015s06600.1" /db_xref="TAIR:AT1G18490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1G3U6" /translation="MFSKFQKATDKAMVFLQNRALSTLYIPKQKLHMAMNTTSPKVQL LFDLCKTTFTPSGLPSASPQPIRKLCSLLDTFGPADIGLKEESPDDDRGHGFFGLNRV ARWAQPITFLDIYECDSFTMCVFCFPTSSVIPLHDHPGMTVFSKVLYGSMHVKAYDWV EPVCIKESREPVRLARLAVDKVSTAPCGTSVLYPKTGGNLHCFTAVTPCAVLDVLAPP YREDIGRKCTYYIDYPYSTFGNGTEISNGKEEDYAWLAEIETPDDLYMREGVYVGPAI QV" gene complement(22552614..22557281) /locus_tag="TCM_014458" /note="dbxref CacaoGD:Thecc1EG014458" mRNA complement(join(22552614..22552643,22555243..22555658, 22555743..22555897,22556193..22556500,22556635..22557281)) /locus_tag="TCM_014458" /product="Enolase 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30174.m009039" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014984t1" /inference="similar to AA sequence:ricco:30174.m009039" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc661t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8689t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc658t10" mRNA complement(join(22552954..22553566,22554200..22554250, 22554353..22554499,22555341..22555658,22555743..22555897, 22556193..22556500,22556635..22557141)) /locus_tag="TCM_014458" /product="Enolase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30174.m009039" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014984t1" /inference="similar to AA sequence:ricco:30174.m009039" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8689t1" CDS complement(join(22553501..22553566,22554200..22554250, 22554353..22554499,22555341..22555658,22555743..22555897, 22556193..22556500,22556635..22557056)) /locus_tag="TCM_014458" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30174.m009039; paralog of Thecc1EG014984t1" /codon_start=1 /product="Enolase 1 isoform 1" /protein_id="EOY22236.1" /db_xref="TAIR:AT1G74030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P09104" /translation="MALPTQTNLLQKPFLSPPSLSQPSAFSAPGPIPFRKFRPASIQC SVKAAPSVTVTASKECKVKSVKARQIIDSRGNPTIEVDLITDDRYRSAVPSGASTGIY EALELRDGDKSVYGGKGVLFAVKNINEVLGPKLIGVDVRNQADVDAVMLEIDGTPNKS KLGANAILGVSLSVCRAGAGAKGMPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN LAMQEFMILPVGATSFAEALRMGSEVYHTLKGIIKAKYGQDACNVGDEGGFAPNVQDN REGLVLLMDAIQKAGYTGKIKIGMDVAASEFFTKDGKYDLNFKKQPNDGAYVRSAQSL GQLYKEFVKDFPIVSIEDPFDQDDWSSWSSLQSSVDIQLVGDDLLVTNPKRIAEAIQK KACNALLLKVNQIGTVTESIQAALDSKAAGWGVMVSHRSGETEDNFIADLSVGLASGQ IKTGAPCRSERLAKYNQLLRIEEELGNVRYAGEAFRSP" CDS complement(join(22555290..22555658,22555743..22555897, 22556193..22556500,22556635..22557056)) /locus_tag="TCM_014458" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30174.m009039; paralog of Thecc1EG014984t1" /codon_start=1 /product="Enolase 1 isoform 2" /protein_id="EOY22237.1" /db_xref="TAIR:AT1G74030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P09104" /translation="MALPTQTNLLQKPFLSPPSLSQPSAFSAPGPIPFRKFRPASIQC SVKAAPSVTVTASKECKVKSVKARQIIDSRGNPTIEVDLITDDRYRSAVPSGASTGIY EALELRDGDKSVYGGKGVLFAVKNINEVLGPKLIGVDVRNQADVDAVMLEIDGTPNKS KLGANAILGVSLSVCRAGAGAKGMPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN LAMQEFMILPVGATSFAEALRMGSEVYHTLKGIIKAKYGQDACNVGDEGGFAPNVQDN REGLVLLMDAIQKAGYTGKIKIGMDVAASEFFTKDGKYDLNFKKQPNDGAYVRSAQSL GQLYKEFVKDFPIVSIEDPFDQDDWSSWSSLQSSVDIQLVGDDLLVTNPKRIAEAIQK KACNALLLKVNIYASTIQSFLGIFS" gene complement(22557239..22558355) /locus_tag="TCM_014459" /note="dbxref CacaoGD:Thecc1EG014459" mRNA complement(join(22557239..22558114,22558181..22558355)) /locus_tag="TCM_014459" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(join(22558066..22558114,22558181..22558347)) /locus_tag="TCM_014459" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22238.1" /translation="MSFFLFFEENSNRFYKPKKIKITAKVGFLYIIMKASSLSCCSGR GCYFSSAACGLRQALRCCSPIWIWSMC" gene 22558460..22559712 /locus_tag="TCM_014460" /note="dbxref CacaoGD:Thecc1EG014460" mRNA join(22558460..22559000,22559143..22559712) /locus_tag="TCM_014460" /product="Tetraspanin11, putative" /inference="alignment:exonerate-protein:2:frave:gene26178" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014462t1" /inference="similar to AA sequence:frave:gene26178" /note="quality class is medium, express is medium, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2046t1_C1" CDS join(22558500..22559000,22559143..22559448) /locus_tag="TCM_014460" /note="dbxref frave:gene26178; paralog of Thecc1EG014462t1" /codon_start=1 /product="Tetraspanin11, putative" /protein_id="EOY22239.1" /db_xref="TAIR:AT1G18520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N074" /translation="MVRISNAVFTFINIFPFFLGVVAVVASIHFRLHGGSVCQNALQN PLLIIGLVLFAVSLLAFIGSCCSNANSVLTVYSILMVLVILALTGFTLFAVVVTNKGV ARRISGLGFSEYRLGDYSGWLRDNFVNHNNWDHTRSCLIDSHVCTTLHSGATFSDFIK QKLSSIQSGCCKPPMYCKFVYKNATFWIMQKSGPDVEDNDCRAWSNDQRKLCYNCKSC KGGVLANIRKEWRLLAILNICILILVLITFNIGCSIRKNRKADEKNYTAA" gene 22562908..22565594 /locus_tag="TCM_014462" /note="dbxref CacaoGD:Thecc1EG014462" mRNA join(22562908..22563665,22565031..22565594) /locus_tag="TCM_014462" /product="Tetraspanin11, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06610.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014460t1" /inference="similar to AA sequence:frave:gene26178" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2398t1_C2" CDS join(22563162..22563665,22565031..22565342) /locus_tag="TCM_014462" /note="dbxref frave:gene26178; paralog of Thecc1EG014460t1" /codon_start=1 /product="Tetraspanin11, putative" /protein_id="EOY22240.1" /db_xref="TAIR:AT1G18520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N074" /translation="MVRVSNFIVGFVNVLLLFLGLVSLSFGVYFVVHGSSHCEKVLTD PLLILGGFLVVVSLLGLIGSLCKNNFCMFIYLAVMFLLILGLIAFTVFVFLVTNPGAG KAFSDRGYKEYKTGDFSNWLQNHFVNDKNWNQIRSCLIEAKVCNSAGNDFNYNALLFF KNTLPRIQAGCCKPPTPCAFSLKNATFWDVPKSGPATKDPDCLTWSNDQQKLCFDCNS CKGGVLANLRKEWRSLAIINVILLVVLILVYSIGCCARRSNQRSNKKYMRGFA" mobile_element 22567536..22567607 /note="source:INTACT383F_F354_scaffold_3-int 2038 2114" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 22568350..22568644 /note="source:CACAO_Again_on_E108_scaffold_4 1 301" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22568639..22568788) /note="source:scaffold_3_CACTA_0396 880 1000" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22568746..22568867) /note="source:CACAO_MITE_S145_scaffold_5 410 534" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(22568759..22569625) /note="source:CACAO_Again_on_E12_scaffold_1 1 873" /mobile_element_type="transposon:TIR/hAT" gene complement(22569532..22576241) /locus_tag="TCM_014463" /note="dbxref CacaoGD:Thecc1EG014463" mRNA complement(join(22569532..22570278,22570398..22570474, 22571128..22571510,22575856..22575950,22576085..22576241)) /locus_tag="TCM_014463" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008199001" /inference="similar to AA sequence:ricco:30174.m009036" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8691t1" CDS complement(join(22570128..22570278,22570398..22570474, 22571128..22571510,22575856..22575950,22576085..22576137)) /locus_tag="TCM_014463" /note="dbxref ricco:30174.m009036" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22241.1" /db_xref="TAIR:AT5G23040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FN50" /translation="MSSISNPTLSTLLLGHKLRQNQNTKNGITYFPTFRRHKIARCAV DMPYGGNAPTFPRIRVWDPYKRLGISPYASEEEIWSARNFLLEQYAGHERSEESIEAA FEKLLMASFQHRKKTKINLKSRLKKKVEESPPWIKNLLNFVELPPVEVIFRRLFLFAF MGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSLARAFIIGLGALATGWICGSIFV PMIPTVLIHPTWTLELLTSLGAYVFLFLACTFLK" mobile_element 22572255..22574809 /note="source:INTACT749_F1_scaffold_1-int 1 2569" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22576566..22589470) /locus_tag="TCM_014465" /note="dbxref CacaoGD:Thecc1EG014465" mRNA complement(join(22576566..22577212,22577300..22577512, 22578789..22578887,22579150..22579275,22580796..22581012, 22581195..22581289,22582328..22582548,22583327..22583400, 22584207..22584332,22584441..22584481,22586011..22586215, 22586703..22586971,22587087..22587216,22587992..22588365, 22589359..22589470)) /locus_tag="TCM_014465" /product="Acyl-activating enzyme 17" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040049t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06650.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4916t2" CDS complement(join(22577102..22577212,22577300..22577512, 22578789..22578887,22579150..22579275,22580796..22581012, 22581195..22581289,22582328..22582548,22583327..22583400, 22584207..22584332,22584441..22584481,22586011..22586215, 22586703..22586971,22587087..22587216,22587992..22588245)) /locus_tag="TCM_014465" /note="paralog of Thecc1EG040049t1" /codon_start=1 /product="Acyl-activating enzyme 17" /protein_id="EOY22242.1" /db_xref="Phytozome:POPTR_0015s06650.1" /db_xref="TAIR:AT5G23050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KBF3" /translation="MVYKSLDSVTVNDIEASGISSQLAEEIYRKVTEIVDGYGAATPE SWNRISKHVLTPNLPFSLHQMMYYGCYKDFGPDPPAWMPDPESALLTNVGLLLEKHGK EFLGSKYKDPISSFSHLQEFSVSNPEVYWKTVLDEMCVNFSVPPDCILHESTSEESRI LNPGGKWLPGAFVNPAKNCLIVNSKRGLDDIVIRWRDEGDDDLPVKSMTLKELQLEVW LVAHALNALGLERGSAIAIDMPMNVYSVIIYLAIVLAGYIVVSIADSFAPLEISTRLK ISEAKAIFTQDLIIRGEKSIPLYSRVVEAEAPMAIVIPARGFSCSAKLRDGDISWSDF LERVRKLKGDVFEAVEQPVEAFTNVLFSSGTTGEPKAIPWTHVTPLKAAADAWCHMDI HSGDIVAWPTNLGWMMGPWLVYASLLNGASMALYNGSPLSSGLAKFVQDAKVTMLGVI PSIVRAWKSTNCVAGYDWSSIRCFSSTGEASNVDEYLWLMGRACYKPIIEYCGGTEIG GGFVSGSFLQPQSLAAFSTPAMGCRLFILGDDGHLIPQDAPGMGELALGPLMFGSSST LLNASHYDVYFKEMPSWNGLILRRHGDVFERTSRGYYHAHGRADDTMNIGGIKVSSVE IERICNAVDSSVLETAAIGVPPADGGPERLVIAVVFKDPDNATPDLNQWRKSFNSAVQ KNLNPLFRVSHVVALSALPRTASNKVMRRVLRKQLAQVDQNSKL" mobile_element 22588286..22589368 /note="source:INTACT135F_F90_scaffold_2-int 12857 14008" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(22590271..22594425) /locus_tag="TCM_014468" /note="dbxref CacaoGD:Thecc1EG014468" mRNA complement(join(22590271..22590738,22590830..22590961, 22591533..22591674,22591937..22592129,22593157..22593402, 22593666..22594425)) /locus_tag="TCM_014468" /product="Calcium sensing receptor" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008201001" /inference="similar to AA sequence:Phytozome:Glyma17g09170.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00287t00001" CDS complement(join(22590507..22590738,22590830..22590961, 22591533..22591674,22591937..22592129,22593157..22593402, 22593666..22593920)) /locus_tag="TCM_014468" /codon_start=1 /product="Calcium sensing receptor" /protein_id="EOY22243.1" /db_xref="Phytozome:Glyma17g09170.1" /db_xref="TAIR:AT5G23060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RE66" /translation="MAVQMTVRVSATARLSLPPLSSSPSSPSPSGASSTSKVSLKPQF KPISLSLPTSTAISLLALFSPPHEAKAVSLSKEQIVSSLTEVEKTLNQVQEAGSTAFD TVQQFLDIVGKALKPAIDAGMPIAQKAGEEALKAASPAISEASKKAQEVIQSTGLDTE PVLSAAKTVADAAKQTTKVIDAAKPLASSTFETITSSDPITIVGTAGALFVAYLLFPP IWSAISYGLRGYKGDLTPAQALDLISMQNYIMIDIRSDKDKDRAGVPRLPSSAKKRMF AIPLEELPSKLRGLVRNAKKVEAEIAALKIAHLKKVNKGSNIVILDSYCDSAKITART LKSLGFNNCCVVADGFSGSRGWLQSSLGTDTYSFSLVEVVSPSRVIPSAVKRIGTAST KFLPGAE" gene complement(22594217..22598525) /locus_tag="TCM_014469" /note="dbxref CacaoGD:Thecc1EG014469" mRNA complement(join(22594217..22598025,22598100..22598525)) /locus_tag="TCM_014469" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008201001" /inference="similar to AA sequence:Phytozome:GSVIVT01008201001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4906t1" CDS complement(22594776..22597454) /locus_tag="TCM_014469" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY22244.1" /db_xref="Phytozome:GSVIVT01008201001" /db_xref="TAIR:AT1G50180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BIR4" /translation="MAEHIVSLVIENIASQMVDEAVSLARVRDQVEWIQGELRRMLCF LKDADAKQDGDERVRNWVADIREVAYDAADVIDSYILKKMRQKEKAPIRLFNRYPFFL NELVARYKLNKQISRIKLKIHDISNGRSTYGIENIGKRVEGTSFAVNSLRERRRSYPH SSEEETVGTDEDIKILEDQLINGELRLSIISIIGMAGLGKTTLAKKIYGSSNINKYFD CCAWIYVSQEYKAGDILRDLCRRVMGLGKAELERMHREEMEEELSSFLEQRRFIVVFD DIWNKEAWDDLKPVFPDTKNGSRIIFTTRFRDVALHADPRSRPHELCLLSDEDSWKLL SKKICLEWNAMTSLPAWTEELGKQIVKKCRGLPLAIVVLGGQLSRREATYEEWLKVLQ SAHWQLLQDPTHCIDILALSYHDLPYYLKPCFLYFGLFPEDFEISVRSLNLLWVAEGF VQPRGQEPLEDVAEDYLEELVGRSMVQIAAKKFNGRIKAIRIHDLLRELAIKKAKEDR FFDIIHGDVKDCFLTRPRRLSTSSGITPKARDSSRIRSLLVFDQNEPILKDLKKFKLL RVLGLESVHIGLLDSDVGNLIHLRYLGLEGTWLKRLPSSICRLLNLQTLDLRSTLVDP IPVSIWKLPELRHLFFNKIREMVVKPPKDVCLFSLQTLQGLCIGQTSSVELGLDKLTT LRHLSLVGHFTLQEEAFRRWIFNSKGLQSLKLDARTRREDVTMVTIPGFMDFSSHIRL NKLYLGGLMHKLFDVQDFPPNLTELTLHGSFLMEDPMVTLEKLPSLRVLKLKHSAYVG KRMVCSSGGFPQLQFLKLSFLYSVGAWRIEEGAMANLKELHIVECKLLRIVPRGLWPV TTLSNLKLGYLPHDFEMRARDRKGENWYRIEHVLPV" mobile_element complement(22597711..22597851) /note="source:CACAO_Helitron_E166_scaffold_5 1 122" /mobile_element_type="transposon:Helitron" gene complement(22598730..22605380) /locus_tag="TCM_014470" /note="dbxref CacaoGD:Thecc1EG014470" mRNA complement(join(22598730..22599310,22599409..22599645, 22604720..22604961,22605057..22605088,22605199..22605380)) /locus_tag="TCM_014470" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036607001" /inference="similar to AA sequence:Phytozome:GSVIVT01036607001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2045t6" mRNA complement(join(22599290..22599310,22599409..22599645, 22604716..22604961,22605057..22605088, 22605199..>22605322)) /locus_tag="TCM_014470" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene21494" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036607001" /inference="similar to AA sequence:Phytozome:Glyma09g11870.3" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2045t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2045t6" CDS complement(join(22599302..22599310,22599409..22599645, 22604720..22604961,22605057..22605088,22605199..22605251)) /locus_tag="TCM_014470" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22245.1" /db_xref="Phytozome:GSVIVT01036607001" /db_xref="TAIR:AT3G12300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LHH6" /translation="MFKNTFQSGFLSILYSLGSKPLQIWDKEVVNGHVKRPHDEDIQS NVLEIIGSNVQSTYITCPVDPAATLGIKLPFLVMIVKNLKKYFTFEIQILDDKNVRRR FRASNFQAVTRVKPYICTMPLRLDEGWNQIQLNLADYTRRAYGTNYVETLRVQVHANC RVRRIYFSDRLYSEEELPPEFKLYLPMQKA" CDS complement(join(22599593..22599645,22604716..22604961, 22605057..22605088,22605199..>22605320)) /locus_tag="TCM_014470" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY22246.1" /db_xref="Phytozome:Glyma09g11870.3" /db_xref="TAIR:AT3G12300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LHH6" /translation="LISEKKPLLPSLNALFPTAKPWKMFKNTFQSGFLSILYSLGSKP LQIWDKEVVNGHVKRPHDEDIQSNVLEIIGSNVQSTYITCPVDPAATLGIKLPFLVMI VKNLKKYFTFEIQILDDKNVRRRFRASNFQVCCHSSKAIHLYYAAEIG" mobile_element 22599968..22600014 /note="source:CACAO_LINE_E_32_scaffold_10 2815 2861" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(22600962..22601749) /note="source:scaffold_6_CACTA_0711 1620 2412" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22601109..22601929 /note="source:scaffold_6_CACTA_0702 3112 3949" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22602092..22602336) /note="source:scaffold_6_CACTA_0702 4227 4486" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22602243..22602471 /note="source:scaffold_5_CACTA_0585 11562 11821" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22602669..22603499) /note="source:scaffold_6_CACTA_0702 3112 3950" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22602851..22603647 /note="source:scaffold_6_CACTA_0711 1620 2413" /mobile_element_type="transposon:TIR/CACTA" gene 22605661..22611253 /locus_tag="TCM_014471" /note="dbxref CacaoGD:Thecc1EG014471" mRNA join(22605661..22605808,22607856..22609059, 22611090..22611253) /locus_tag="TCM_014471" /product="AP2 11, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g07690.1" /inference="similar to AA sequence:ricco:30174.m009031" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3305t1" mobile_element complement(22605860..22606308) /note="source:scaffold_7_CACTA_0795 2846 3335" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22607293..22607343 /note="source:CACAO_Mariner_E69_scaffold_2 4233 4278" /mobile_element_type="transposon:TIR/Tc1-Mariner" CDS 22608238..22609044 /locus_tag="TCM_014471" /note="dbxref ricco:30174.m009031" /codon_start=1 /product="AP2 11, putative" /protein_id="EOY22247.1" /db_xref="TAIR:AT5G19790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTG5" /translation="MTVSQNHSIKSPLFHNIIAVPPQFCSTLTLSPPIMDSMDSSRTI PSHQSQSPCKNHISIPLETENFHEDSEKRGKKLTKRGNNDNTGRRYLGVRQRPSGRWV AEIKDSSQKLRLWLGTFDRAEEAALAYDSAARLLRGRNAKTNFQYHGVMNTYEENCNL LGKNPRLYQLLQLTITKNHARSTFLKSIGTVPWQNQNIGNKVDPVDFDTLVEETIFCS PTSDQDEGCNNNLSQLSLGSSKVYSSVVVAPSFCASLDQGGGEGKSCQDA" gene complement(22612455..22615857) /locus_tag="TCM_014472" /note="dbxref CacaoGD:Thecc1EG014472" mRNA complement(join(22612455..22613441,22615319..22615372, 22615781..22615857)) /locus_tag="TCM_014472" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.28 coverage" CDS complement(22612893..22613171) /locus_tag="TCM_014472" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22248.1" /translation="MIKVTTNRVKTVNLRKTLPLLTEKNTNKRKKKFPKGKKREKVTV RLSLRREKENQIKKKREIKESEREACGNGDTAFRFFPGSILFFFLFHP" mobile_element 22614158..22614574 /note="source:scaffold_5_CACTA_0614 79 444" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22615770..22615780 /note="source:CACAO_Mariner_E220_scaffold_9 8432 8459" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 22615781..22616144 /note="source:MITE_Unknow_2_18 9 376" /mobile_element_type="transposon:TIR/MITE" mobile_element 22616145..22616358 /note="source:CACAO_Mariner_E220_scaffold_9 8460 9046" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(22617439..22617504) /note="source:CACAO_Mariner_E36_scaffold_2 2766 3101" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 22617505..22617777 /note="source:CACAO_M_S_E32474_F197_scaffold_3 1 273" /mobile_element_type="retrotransposon:LTR/Copia" gene 22618282..22618867 /locus_tag="TCM_014473" /note="dbxref CacaoGD:Thecc1EG014473" mRNA 22618282..22618867 /locus_tag="TCM_014473" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30174.m009030" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4898t1" CDS 22618395..22618757 /locus_tag="TCM_014473" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22249.1" /translation="MESAISSLPQGQQQQQGDIGSSQGAAAASSSSSSAGSIGPFFAV ISILTFLAIVSCVVGRICVRRRTAAPVTPLDTIKHGSCLGWLKRKCRHCMAGEVEVGA KVMSFGEETNNHAHSPEV" mobile_element complement(22618806..22618873) /note="source:scaffold_4_CACTA_0483 2563 2631" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22619257..22619379 /note="source:scaffold_7_CACTA_0795 2946 3079" /mobile_element_type="transposon:TIR/CACTA" gene 22621157..22621938 /locus_tag="TCM_014474" /note="dbxref CacaoGD:Thecc1EG014474" mRNA 22621157..22621938 /locus_tag="TCM_014474" /product="EF hand calcium-binding protein family" /inference="alignment:exonerate- protein:2:ricco:30174.m009161" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016579t1" /inference="similar to AA sequence:ricco:30174.m009161" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4908t1" CDS 22621354..22621839 /locus_tag="TCM_014474" /note="dbxref ricco:30174.m009161; paralog of Thecc1EG016579t1" /codon_start=1 /product="EF hand calcium-binding protein family" /protein_id="EOY22250.1" /db_xref="TAIR:AT1G18530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LI84" /translation="MVSLRVDQINQLKDIFARFDMDADGSLTILELAALLRSLGLKPS GDQIHVLLANMDSNGNGAVEFDELVNAILPDMNEQILVNQEQLREVFHLFDRDGNGYI TAAELAGCMAKMGQSLTYRELTEMIKEADTDGDGVISFNEFSSVMAKSALDFLGITLS C" gene complement(22622583..22631895) /locus_tag="TCM_014475" /note="dbxref CacaoGD:Thecc1EG014475" mRNA complement(join(22622583..22624004,22624177..22624368, 22624784..22624882,22624987..22625112,22625470..22625679, 22626534..22626642,22626731..22626819,22627051..22627327, 22627748..22627858,22628031..22629382,22630119..22630204, 22630328..22630706,22631428..22631895)) /locus_tag="TCM_014475" /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011901t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s05450.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc261t3" mRNA complement(join(22622847..22624004,22624177..22624368, 22624784..22624882,22624987..22625112,22625470..22625679, 22626534..22626642,22626731..22626819,22627051..22627327, 22627748..22627858,22628031..22629382,22630119..22630204, 22630328..22630706,22631559..22631655)) /locus_tag="TCM_014475" /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011901t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s05450.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc261t3; alternateUTRof:Thecc1EG014475t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc261t3" mRNA complement(join(22622847..22624004,22624177..22624368, 22624784..22624882,22624987..22625112,22625470..22625679, 22626534..22626642,22626731..22626819,22627051..22627327, 22627748..22627858,22628031..22629382,22630119..22630706, 22631559..22631655)) /locus_tag="TCM_014475" /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011901t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s05450.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc261t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc261t3" CDS complement(join(22623375..22624004,22624177..22624368, 22624784..22624882,22624987..22625112,22625470..22625679, 22626534..22626642,22626731..22626819,22627051..22627327, 22627748..22627858,22628031..22629382,22630119..22630204, 22630328..22630511)) /locus_tag="TCM_014475" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011901t1" /codon_start=1 /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 1" /protein_id="EOY22251.1" /db_xref="Phytozome:POPTR_0012s05450.2" /db_xref="TAIR:AT1G68710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LI83" /translation="MAGGRRKKQHFSRIHAFSCGKASFKGEHSLIGGPGFSRVVYCND PECFEAGLLNYCDNYVRAVSNVLPLVVVIGATMGKEVVEDWRRKKQDIEVNNRKVKMH QGDGIFEHTKWMDLKVGDIVKVEKDEFFPADLILLSSSYDEAICYVETTNLDGETNLK LKQALEATSSMHEESSFQNFKAVIRCEDPNSNLYSFVGSLELGEEQHPLSPQQLLLRD SKLRNTDYIFGAVIFTGHDTKVIQNSTAPPSKRSKIEKRMDKIVYFLFAVLVVLSIIG SIFFGIATREDLENGRMTRWYLRPDKTTIYYNPKRAAVAAILQFLTALMLYSYLIPIS LYVSIEIVKVLQSIFINQDLHMYYEEADKPARARTSNLNEELGQVDTILSDKTGTLTC NSMEFIKCSVAGISYGHGITEVERALAWRKGSPLAQEATEVEGQVEKFKEEKPSVKGF NFVDERITNGNWPNETRADVIQKFLRLLAICHTAIPEVDEGTGRISYEAESPDEAAFV VAARELGFEFYERTQTSISLYELDPVSGKKVERSYNLLNILEFSSSRKRMSVIVRNEE GKLLLLCKGADSVMFERLAKNGREFAEQTKEHIDEYADAGLRTLVLAYREIDEEEYVE FNEQFTEAKNLVSGDREEMIEEVAEKIERDLILLGATAVEDKLQNGVPECIDKLAQAG IKLWVLTGDKMETAINIGFACSLLRQGMKQIVINSETPENKALEKAGDKSAVAAAFKA GVLQQIAEGKQLLTLSSENSEALALIVDGKSLTYALDDDVRDIFLELAIGCASVICCR SSPKQKALVARLVKSKTGSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIA IAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTIFFYEIYASFSGQAVYNDW YLSLYNVFFTSLPVIALGVFDQDISSRLCLKFPLLYQEGIQNVLFSWLRILGWAFNGV LSATIIFFFCIRAMQHQAFRKGGEVVGLEILGATMYTCMVWVVNCQMALSITYFTYIQ HLFIWGGIILWYIFLMAYGAMDPDISTTAYQVFVEACAPSGLYWLLTLLVLICSLLPY FTYSAIQMRFFPLYHQMIQWIRSDGQSDDPEYCHMVRQRSLRPTTVGYTARFEAKSKS FKERAGDH" CDS complement(join(22623375..22624004,22624177..22624368, 22624784..22624882,22624987..22625112,22625470..22625679, 22626534..22626642,22626731..22626819,22627051..22627327, 22627748..22627858,22628031..22629382,22630119..22630204, 22630328..22630511)) /locus_tag="TCM_014475" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011901t1" /codon_start=1 /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 1" /protein_id="EOY22252.1" /db_xref="Phytozome:POPTR_0012s05450.2" /db_xref="TAIR:AT1G68710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LI83" /translation="MAGGRRKKQHFSRIHAFSCGKASFKGEHSLIGGPGFSRVVYCND PECFEAGLLNYCDNYVRAVSNVLPLVVVIGATMGKEVVEDWRRKKQDIEVNNRKVKMH QGDGIFEHTKWMDLKVGDIVKVEKDEFFPADLILLSSSYDEAICYVETTNLDGETNLK LKQALEATSSMHEESSFQNFKAVIRCEDPNSNLYSFVGSLELGEEQHPLSPQQLLLRD SKLRNTDYIFGAVIFTGHDTKVIQNSTAPPSKRSKIEKRMDKIVYFLFAVLVVLSIIG SIFFGIATREDLENGRMTRWYLRPDKTTIYYNPKRAAVAAILQFLTALMLYSYLIPIS LYVSIEIVKVLQSIFINQDLHMYYEEADKPARARTSNLNEELGQVDTILSDKTGTLTC NSMEFIKCSVAGISYGHGITEVERALAWRKGSPLAQEATEVEGQVEKFKEEKPSVKGF NFVDERITNGNWPNETRADVIQKFLRLLAICHTAIPEVDEGTGRISYEAESPDEAAFV VAARELGFEFYERTQTSISLYELDPVSGKKVERSYNLLNILEFSSSRKRMSVIVRNEE GKLLLLCKGADSVMFERLAKNGREFAEQTKEHIDEYADAGLRTLVLAYREIDEEEYVE FNEQFTEAKNLVSGDREEMIEEVAEKIERDLILLGATAVEDKLQNGVPECIDKLAQAG IKLWVLTGDKMETAINIGFACSLLRQGMKQIVINSETPENKALEKAGDKSAVAAAFKA GVLQQIAEGKQLLTLSSENSEALALIVDGKSLTYALDDDVRDIFLELAIGCASVICCR SSPKQKALVARLVKSKTGSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIA IAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTIFFYEIYASFSGQAVYNDW YLSLYNVFFTSLPVIALGVFDQDISSRLCLKFPLLYQEGIQNVLFSWLRILGWAFNGV LSATIIFFFCIRAMQHQAFRKGGEVVGLEILGATMYTCMVWVVNCQMALSITYFTYIQ HLFIWGGIILWYIFLMAYGAMDPDISTTAYQVFVEACAPSGLYWLLTLLVLICSLLPY FTYSAIQMRFFPLYHQMIQWIRSDGQSDDPEYCHMVRQRSLRPTTVGYTARFEAKSKS FKERAGDH" CDS complement(join(22623375..22624004,22624177..22624368, 22624784..22624882,22624987..22625112,22625470..22625679, 22626534..22626642,22626731..22626819,22627051..22627327, 22627748..22627858,22628031..22629382,22630119..22630511)) /locus_tag="TCM_014475" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG011901t1" /codon_start=1 /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 3" /protein_id="EOY22253.1" /db_xref="Phytozome:POPTR_0012s05450.2" /db_xref="TAIR:AT1G68710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LI83" /translation="MAGGRRKKQHFSRIHAFSCGKASFKGEHSLIGGPGFSRVVYCND PECFEAGLLNYCDNYVRGTKYTLATFFPKSLFEQFRRVANFYFLICAILSFTPLSPYS AVSNVLPLVVVIGATMGKEVVEDWRRKKQDIEVNNRKVKMHQGDGIFEHTKWMDLKVG DIVKVEKDEFFPADLILLSSSYDEAICYVETTNLDGETNLKLKQALEATSSMHEESSF QNFKAVIRCEDPNSNLYSFVGSLELGEEQHPLSPQQLLLRDSKLRNTDYIFGAVIFTG HDTKVIQNSTAPPSKRSKIEKRMDKIVYFLFAVLVVLSIIGSIFFGIATREDLENGRM TRWYLRPDKTTIYYNPKRAAVAAILQFLTALMLYSYLIPISLYVSIEIVKVLQSIFIN QDLHMYYEEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGISYGH GITEVERALAWRKGSPLAQEATEVEGQVEKFKEEKPSVKGFNFVDERITNGNWPNETR ADVIQKFLRLLAICHTAIPEVDEGTGRISYEAESPDEAAFVVAARELGFEFYERTQTS ISLYELDPVSGKKVERSYNLLNILEFSSSRKRMSVIVRNEEGKLLLLCKGADSVMFER LAKNGREFAEQTKEHIDEYADAGLRTLVLAYREIDEEEYVEFNEQFTEAKNLVSGDRE EMIEEVAEKIERDLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINI GFACSLLRQGMKQIVINSETPENKALEKAGDKSAVAAAFKAGVLQQIAEGKQLLTLSS ENSEALALIVDGKSLTYALDDDVRDIFLELAIGCASVICCRSSPKQKALVARLVKSKT GSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHW CYRRISSMICYFFYKNIAFGFTIFFYEIYASFSGQAVYNDWYLSLYNVFFTSLPVIAL GVFDQDISSRLCLKFPLLYQEGIQNVLFSWLRILGWAFNGVLSATIIFFFCIRAMQHQ AFRKGGEVVGLEILGATMYTCMVWVVNCQMALSITYFTYIQHLFIWGGIILWYIFLMA YGAMDPDISTTAYQVFVEACAPSGLYWLLTLLVLICSLLPYFTYSAIQMRFFPLYHQM IQWIRSDGQSDDPEYCHMVRQRSLRPTTVGYTARFEAKSKSFKERAGDH" mobile_element 22633093..22633149 /note="source:scaffold_7_CACTA_0795 2802 2919" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22633150..22633306) /note="source:CACAO_PIF_E119_scaffold_3 4486 4657" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22633307..22633442 /note="source:scaffold_7_CACTA_0795 2920 3208" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22637252..22637353) /note="source:scaffold_10_CACTA_0137 6921 7010" /mobile_element_type="transposon:TIR/CACTA" gene complement(22637956..22650430) /locus_tag="TCM_014476" /note="dbxref CacaoGD:Thecc1EG014476" mRNA complement(join(22637956..22639683,22640857..22641063, 22641367..22641495,22641571..22641849,22642026..22642518, 22643611..22643755,22644307..22644384,22644530..22644616, 22644718..22644793,22645240..22645391,22646338..22646412, 22646506..22646567,22646905..22647008,22648242..22648336, 22648428..22648518,22649697..22650430)) /locus_tag="TCM_014476" /product="SWAP/surp domain-containing protein" /inference="alignment:exonerate- protein:2:ricco:30174.m008743" /inference="similar to AA sequence:ricco:30174.m008743" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4925t2" CDS complement(join(22638907..22639683,22640857..22641063, 22641367..22641495,22641571..22641849,22642026..22642518, 22643611..22643755,22644307..22644384,22644530..22644616, 22644718..22644793,22645240..22645391,22646338..22646412, 22646506..22646567,22646905..22647008,22648242..22648336, 22648428..22648518,22649697..22649831)) /locus_tag="TCM_014476" /note="dbxref ricco:30174.m008743" /codon_start=1 /product="SWAP/surp domain-containing protein" /protein_id="EOY22254.1" /db_xref="TAIR:AT5G23080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXN9" /translation="MDSDEEDCVFFGTPIEREEEITNRRKKAVAEASGNLRSLPAWKQ EVRDEEGRRRFHGAFTGGFSAGYYNTVGSKEGWAPQSFTSSRKNRAEVKQQSIINFLD EDEKAELEGQYLGTSSQFDTFGFTAAEYARKQADKEQKQRPSAIPGPVPDELVLPAAE SIGVKLLLRMGWRHGRAIKESNASSLYDARREARKAFLAFASDDTKASHPDHEPVEGQ PESLAEQPATNDAKSSQSLPVFVLNPKQDLHGLGYDPFKHAPEFREKKRSHLSNNKQH GYRKAISIKDSPFGSKSGKAAPGFGIGALEEFDAEDEDIYAAGYDFQETYVEEDEEPS RLSIESKQKVVAKDQGILRGFKVASVSDYQLERFDPPLIPKDFVPHHKFPGSLETLKK LDVPSPPVVPPPDDNNLKLLIEGVATLVARCGKLFEDLSRKKNQSNPLFSFLCGGNGH DYYARKLWEEHQKRGNQGKLSLDGKLSPSVQKMTAESRGKLLGEKPLERSLKETPSSS VASGEFVQLQFNLSDTFTNPASFSELPEVAKPFKDDPAKQERFELFLKEKYEGGLRST GSSAASNMSEAARARERLDFEAAAEAIEKAKRGKESMISTQPFDLLATGMQFTSGGLE QVKDAHAEDLVTKKMYPRRAEFQWRPLPILCKRFDLIDPHMGKPPPPPRMRSKMDSLL FMPDSVQGAKLEDVITNRDLPVAQTDAHKTIGDVAEKEIEIEVENVERPVDLYKAIFS DDSDDDVEDSNTNKVGDPEKKIETATTTLNRLIAGDFLESLGKELGLEVPPDAPYSTN KASIPAQIETPNGDAENAKIILVEGRTSCTSNAVSGTSLNPGQETARDSESSKNESIP GSSLRYSSKYTDGLSENISDKVNVEKFAQEDRRAKSPSRQQRNWSSSSSSEDERSRKH SRQHRHRSSDSCSDSSTDHRDRNRSRSKGRWKKSSREKSSSSRKHSKHHKHRNRDSAG RSRYGSEREHSEARKEKRKRRD" mobile_element complement(22650528..22650780) /note="source:scaffold_7_CACTA_0789 2957 3226" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22650812..22651463 /note="source:CACAO_hAT_E731_scaffold_2 545 1249" /mobile_element_type="transposon:TIR/hAT" gene 22653024..22657998 /locus_tag="TCM_014477" /note="dbxref CacaoGD:Thecc1EG014477" mRNA join(22653024..22653357,22653450..22653513, 22654031..22654133,22654213..22654289,22654594..22654683, 22656145..22656239,22656869..22656937,22657298..22657998) /locus_tag="TCM_014477" /product="Nuclear factor Y isoform 1" /inference="alignment:exonerate- protein:2:ricco:30174.m008742" /inference="similar to AA sequence:Phytozome:Glyma05g07750.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00296t00001_C2" mRNA join(22653127..22653357,22653450..22653513, 22654594..22654683,22656145..22656239,22656869..22656937, 22657298..22657709) /locus_tag="TCM_014477" /product="Nuclear factor Y, subunit B13 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30174.m008742" /inference="similar to AA sequence:Phytozome:Glyma05g07750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06224t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00296t00001_C2" CDS join(22653459..22653513,22654031..22654133, 22654213..22654289,22654594..22654683,22656145..22656239, 22656869..22656937,22657298..22657459) /locus_tag="TCM_014477" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nuclear factor Y isoform 1" /protein_id="EOY22255.1" /db_xref="Phytozome:Glyma05g07750.1" /db_xref="TAIR:AT5G23090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P49592" /translation="MEPMDIVGKSKEDASLPKGVNSLSNFLKKAIVGWLLYVFVFKLQ RRFRARASMASLSWERVQVFGQMYLKLVDVFAFHATMTKIIKEMLPPDVRVARDAQDL LIECCVEFINLISSESNDVCNREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKI ETMQDSLKGGKWSNGAEMTEEEAVAEQQRMFAEARARMNGGAVAPKQPDPDPSLES" CDS join(22653459..22653513,22654594..22654683, 22656145..22656239,22656869..22656937,22657298..22657459) /locus_tag="TCM_014477" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nuclear factor Y, subunit B13 isoform 2" /protein_id="EOY22256.1" /db_xref="Phytozome:Glyma05g07750.1" /db_xref="TAIR:AT5G23090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P49592" /translation="MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLI ECCVEFINLISSESNDVCNREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKIET MQDSLKGGKWSNGAEMTEEEAVAEQQRMFAEARARMNGGAVAPKQPDPDPSLES" misc_feature join(22656226..22656937,22657298..22657306) /locus_tag="TCM_014477" /note="Gene fragment of Thecc1EG014477t1; dbxref gnl|CacaoGD|Thecc1EG014477t1; quality class is mediumpartial-partof is thecc1eg014477t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1757t1; dbxref CacaoGD:Thecc1EG014478t1" gene 22658475..22659660 /locus_tag="TCM_014479" /note="dbxref CacaoGD:Thecc1EG014479" mRNA 22658475..22659660 /locus_tag="TCM_014479" /product="Dr1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011889t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s05480.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01821t00001" CDS 22658573..22659322 /locus_tag="TCM_014479" /note="paralog of Thecc1EG011889t1" /codon_start=1 /product="Dr1" /protein_id="EOY22257.1" /db_xref="Phytozome:POPTR_0012s05480.1" /db_xref="TAIR:AT5G23100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FN45" /translation="MARISQDSSKRHFHWTKKVGTEDDDEAPTFKSSSNSNEEDKKEN LKSHVAMPTPRKKLPAVAVARLRSVLTAFGKNRSSLPFGLGPRVVGTLFGYRRGHVHF AFQKDPNSPPAFLVELATPISGLVREMASGLVRIALECDKEKEEEKKAVRLLEEPVWR TYCNGKKCGFATRRECGAKEWKILKAVEPISMGAGVLPGSGAEAGADGELMYMRAKFE RIVGSRDSEAFYMMNPDSNGTPELSIYLLRV" gene complement(22664385..22669985) /locus_tag="TCM_014480" /note="dbxref CacaoGD:Thecc1EG014480" mRNA complement(join(22664385..22665122,22665443..22666114, 22666365..22666730,22666818..22666910,22667001..22667051, 22667795..22668068,22668714..22669985)) /locus_tag="TCM_014480" /product="ATP binding microtubule motor family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s05490.1" /inference="similar to AA sequence:ricco:30174.m008740" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4951t4" CDS complement(join(22665084..22665122,22665443..22666114, 22666365..22666730,22666818..22666910,22667001..22667051, 22667795..22668068,22668714..22669564)) /locus_tag="TCM_014480" /note="dbxref ricco:30174.m008740" /codon_start=1 /product="ATP binding microtubule motor family protein" /protein_id="EOY22258.1" /db_xref="TAIR:AT1G18550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ICA0" /translation="MPVSTRSQISSQEEQRSSRCSRSNEKEEGTQVSNINNNNVPLRN PHHGLKEKMRALTLLYEQQKKASAALRNNSSPKPDQEKRFSTHPSVDLLTSCKRQERK EEKEQKDSKFNNVMRENTMTTLPAMANSTVTRTFVLPQPPLDDAKENILIGPDKILGF SSCTRKATTTTVKTTVARKLSMGGTRNGQELEKIESISCTEKNGTMGGDDSRILVFVR LRPMAKKEKEVGSRCCVKIVNKRDVYLTEFANENDYLRLKRLRGRHFTFDASFPDSTS QHEVYTTTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTVDNPGVMVLAIKDLFTK IRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRPLVLREDKQGIVAAGLTQYRAYSTDE VMALLQRGNQNRTTEPTRANETSSRSHAILQVVIEYRVKDASMNVINRVGKLSLIDLA GSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLG GACNTVMIANISPSNLSFGETQNTLHWADRAKEIRTKACEANEEVLEVPESGTDQAKL LLELQKENRELRVQLARQQQKLLTLQAQSLAANASPTPSSVTSLMTPPSTAQPNEKRR PRSTFLTGNCFTPESKKRGAEEAVKELRLTVKALELEMARMKKDYASQLKQKDDVIRE LSRKSEKTSDVGVKRVATRASLRPKEPSAGDLKSPSHRFRSPVPTTKKRSFWDITTAN SPSVTTLNRRKTRSHVISEPVAAPSMLLQPGFSRQRPHALK" mobile_element 22667213..22667285 /note="source:scaffold_1_CACTA_0016 6347 6434" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22667214..22667296) /note="source:scaffold_10_CACTA_0127 10146 10244" /mobile_element_type="transposon:TIR/CACTA" gene 22669926..22679298 /locus_tag="TCM_014481" /note="dbxref CacaoGD:Thecc1EG014481" mRNA join(22669926..22670060,22671631..22672073, 22672575..22672760,22673459..22673644,22675181..22675264, 22676168..22676212,22676428..22676499,22676588..22676887, 22677856..22677894,22678004..22678108,22678205..22678273, 22678359..22678484,22678671..22679298) /locus_tag="TCM_014481" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008218001" /inference="similar to AA sequence:ricco:28966.m000526" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5067t3" CDS join(22670012..22670060,22671631..22672073, 22672575..22672760,22673459..22673644,22675181..22675264, 22676168..22676212,22676428..22676499,22676588..22676887, 22677856..22677894,22678004..22678108,22678205..22678273, 22678359..22678484,22678671..22678853) /locus_tag="TCM_014481" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28966.m000526" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY22259.1" /db_xref="TAIR:AT3G18600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DBS1" /translation="MGALQRSKILSGAQRLGMGVAEEKSFISSSLEESKKKRKRKRSR TKKSEHQNPDNNTDREEGGEEEEFEQEKQEEDETENREVQEKKNRKKNKKVKSDDDEK QELVNNEEEEEEEEEEGEKGEIKEKVKNGGSGIMSTESFESLGLSEPTFKAIKEMGFQ YMTQIQARAIPPLMIGKDVLGAARTGSGKTLAFLVPAVELLYNVHFTPRNGTGVIVIC PTRELAIQTHAVAKDLLKYHSQTLGLVIGGAARRGEAERIAKGVNLLVATPGRLLDHL QHTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKFLPKQNRQTALFSATQTKKVED LARLSFQTTPIYIDVDDGRKKVTNEGLQQGYCVVHSSKRFILLYSFLKRNLSKKVMVF FSSCNSVKFHAELLRYIHVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGL DIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKAAKVP VKEYEFDEKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLD MQAIAASFCFSCPPKVNLNIDSNASKFRKTTRKVEGVRNSFSASNPYGRQRGEDDNRQ FVRY" mRNA join(22671539..22672073,22672572..22672760, 22673459..22673644,22675181..22675264,22676168..22676212, 22676428..22676499,22676588..22676887,22677856..22677894, 22678004..22678108,22678203..22678273,22678359..22678484, 22678671..22679190) /locus_tag="TCM_014481" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008218001" /inference="similar to AA sequence:ricco:28966.m000526" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5067t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5067t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1311t8" CDS join(22671633..22672073,22672572..22672760, 22673459..22673644,22675181..22675264,22676168..22676212, 22676428..22676499,22676588..22676887,22677856..22677894, 22678004..22678108,22678203..22678273,22678359..22678368) /locus_tag="TCM_014481" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28966.m000526" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY22260.1" /db_xref="TAIR:AT3G18600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SB89" /translation="MGVAEEKSFISSSLEESKKKRKRKRSRTKKSEHQNPDNNTDREE GGEEEEFEQEKQEEDETENREVQEKKNRKKNKKVKSDDDEKQELVNNEEEEEEEEEEG EKGEIKEKVKNGGSGIMSTESFESLGLSEPTFKAIKEMGFQYMTQQIQARAIPPLMIG KDVLGAARTGSGKTLAFLVPAVELLYNVHFTPRNGTGVIVICPTRELAIQTHAVAKDL LKYHSQTLGLVIGGAARRGEAERIAKGVNLLVATPGRLLDHLQHTKGFIYKNLKCLMI DEADRILEANFEEEMKQIIKFLPKQNRQTALFSATQTKKVEDLARLSFQTTPIYIDVD DGRKKVTNEGLQQGYCVVHSSKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHAELLRY IHVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDE PKEYIHRVGRTARGEGARGNALLFLIPEELQFLRYLKRQQKFLLRNMSLMRRSWRMCS LIWRS" mobile_element 22674195..22674700 /note="source:CACAO_on_E310_scaffold_10 1 517" /mobile_element_type="transposon:TIR/Mutator" gene complement(22679403..22680277) /locus_tag="TCM_014482" /note="dbxref CacaoGD:Thecc1EG014482" mRNA complement(join(22679403..22679772,22679884..22680277)) /locus_tag="TCM_014482" /product="Early nodulin-like protein 6, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047034t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06210.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1311t10" CDS complement(join(22679441..22679772,22679884..22680082)) /locus_tag="TCM_014482" /note="paralog of Thecc1EG047034t1" /codon_start=1 /product="Early nodulin-like protein 6, putative" /protein_id="EOY22261.1" /db_xref="Phytozome:POPTR_0015s06210.1" /db_xref="TAIR:AT1G48940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0A5" /translation="MPELAAKTTMASHFRKVFLFSSLFFYIAICAEYEVNGDDGWIAP KHDNQIYNKWASSNRFKVDDTIHFKYKKDSVLVVTQEEYDKCQPSHPQFFSNNGDTVF KLDRAGLFYFMSGVTGHCQKGQKMIIKVLEPETPPQSQNQNSTTNTPEHETNGAFEVA AVSASTIMLLVMSAFI" gene complement(22680332..22682477) /locus_tag="TCM_014483" /note="dbxref CacaoGD:Thecc1EG014483" mRNA complement(join(22680332..22681733,22682162..22682477)) /locus_tag="TCM_014483" /product="Piriformospora indica-insensitive protein 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400007239" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011886t1" /inference="similar to AA sequence:frave:gene26191" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4929t1" CDS complement(join(22680681..22681733,22682162..22682380)) /locus_tag="TCM_014483" /note="dbxref frave:gene26191; paralog of Thecc1EG011886t1" /codon_start=1 /product="Piriformospora indica-insensitive protein 2" /protein_id="EOY22262.1" /db_xref="TAIR:AT1G68780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5PP26" /translation="MKNPIVTIKNFLLLFSLVGLLVLCKCQEDHFFSMAPMEKREQEA LYSAIQGFVGKWWNGSDLYPDPCGWSPIQGVYCDLFDGFWHVTVLNIGLVFDNSLQCS QDAKFTHHLFELTHLRSLSFFNCFFSPRHNPIRIPSSNWERLSNSLESLGFRSNRGLI GTIPTSIVSLKQLKSLVLLENGLTGELPIELGSLVNLRQLVLAGNRFTGQIPESFGGL TQLLIMDLSRNTLSGSLPLTFGGNFTSLLKLDLSSNKLEGKLPTEIGSLKNATLLDLG RNNFSGGLIESLEEMVSLKEVVLSNNPLGGDLMGVQWGNLQDLEILDLSNLGLTGKIP ESMTEMKRLRYLGLNDNNLSGNLTPKIATLPSLGALYINGNNLTGKLEFSGGFYKQMG RRFRAWNNSNLCYQAEMISSLSHVPNGVKSC" gene complement(22684367..22690065) /locus_tag="TCM_014484" /note="dbxref CacaoGD:Thecc1EG014484" mRNA complement(join(22684367..22684557,22685098..22686366, 22686538..22686675,22686753..22686936,22688472..22688629, 22688724..22688947,22689043..22689270,22689384..22689421, 22689623..22690065)) /locus_tag="TCM_014484" /product="No lysine kinase 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031704.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026402t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09610.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4953t2" mRNA complement(join(22684399..22684557,22685098..22686366, 22686538..22686675,22686753..22686936,22688472..22688629, 22688724..22688947,22689623..22690044)) /locus_tag="TCM_014484" /product="No lysine kinase 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031704.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s09610.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc988t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4953t2" CDS complement(join(22685510..22686366,22686538..22686675, 22686753..22686936,22688472..22688629,22688724..22688947, 22689043..22689270,22689384..22689421,22689623..22689709)) /locus_tag="TCM_014484" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026402t1" /codon_start=1 /product="No lysine kinase 3 isoform 1" /protein_id="EOY22263.1" /db_xref="Phytozome:POPTR_0015s09610.1" /db_xref="TAIR:AT3G48260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAT5" /translation="MPQDSTSEQEQDDSDAEFVEIDPTGRYGRYKGVLGRGAFKKVYR AFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWIDTKNE NINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCD NIFVNGNQGEVKIGDLGLAAILCQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGM CLLELVTFEYPYVECANAAQIFKKVTSGIKPASLAKVTDPGVKLFIEKCIAKVSERLP AKELLGDPFLQSDEENGSVGCSLRPKAHTSDSSSDPTDFRRSTKDLQSEASVDVKVQG QRKDLNTIFLKLRIADSTGHIRNIHFPFDIEADTPTAVASEMVEELDLTDQDVATISE MIGTEIRSHIPDWTVRETPRDNFVEVANSGDYISENKGDGSPLAYEPTSSPGSLSLER LPSGRRYWSDSPKAAAGGISPAGTGLSNLASPVDFVRFADSFSEHDEQSHDIYESEGN IKSGTSLKQLENEYTHHNGRDDGQGKDGNRPADMPLSTSGGNMHDGSATCSSREKCNL SKDTESGVKVIFERLELLLVKQQMEIDELKKKHKLAISDLLKEISPEIREKVLDMCKM KIPDYNIQNETIC" CDS complement(join(22685510..22686366,22686538..22686675, 22686753..22686936,22688472..22688629,22688724..22688947, 22689623..22689675)) /locus_tag="TCM_014484" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="No lysine kinase 3 isoform 2" /protein_id="EOY22264.1" /db_xref="Phytozome:POPTR_0015s09610.1" /db_xref="TAIR:AT3G48260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAT5" /translation="MIPMLSSWRLILRVVMVGYRKKHKHVDLRALKKWSRQILEGLLY LHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILCQARSAHSVIGTPEFMAPEL YEEEYNELVDIYAFGMCLLELVTFEYPYVECANAAQIFKKVTSGIKPASLAKVTDPGV KLFIEKCIAKVSERLPAKELLGDPFLQSDEENGSVGCSLRPKAHTSDSSSDPTDFRRS TKDLQSEASVDVKVQGQRKDLNTIFLKLRIADSTGHIRNIHFPFDIEADTPTAVASEM VEELDLTDQDVATISEMIGTEIRSHIPDWTVRETPRDNFVEVANSGDYISENKGDGSP LAYEPTSSPGSLSLERLPSGRRYWSDSPKAAAGGISPAGTGLSNLASPVDFVRFADSF SEHDEQSHDIYESEGNIKSGTSLKQLENEYTHHNGRDDGQGKDGNRPADMPLSTSGGN MHDGSATCSSREKCNLSKDTESGVKVIFERLELLLVKQQMEIDELKKKHKLAISDLLK EISPEIREKVLDMCKMKIPDYNIQNETIC" mobile_element 22686492..22686536 /note="source:scaffold_5_CACTA_0580 13309 13353" /mobile_element_type="transposon:TIR/CACTA" gene complement(22691483..22700561) /locus_tag="TCM_014485" /note="dbxref CacaoGD:Thecc1EG014485" mRNA complement(join(22691483..22691936,22693947..22694080, 22694177..22694269,22694359..22694574,22694815..22695173)) /locus_tag="TCM_014485" /product="Ribosomal protein L19 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007636001" /inference="similar to AA sequence:Phytozome:GSVIVT01007636001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4990t1; inference alignment:Newbler:10:TSA:cgbaP1_g06805t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8687t2" mRNA complement(join(22691810..22691936,22693947..22694080, 22694177..22694263,22694335..22694577,22694815..22695330, 22700459..22700561)) /locus_tag="TCM_014485" /product="Ribosomal protein L19 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007636001" /inference="similar to AA sequence:ricco:29827.m002670" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06805t00001" CDS complement(join(22691837..22691936,22693947..22694080, 22694177..22694269,22694359..22694574,22694815..22694994)) /locus_tag="TCM_014485" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ribosomal protein L19 family protein isoform 2" /protein_id="EOY22266.1" /db_xref="Phytozome:GSVIVT01007636001" /db_xref="TAIR:AT4G11630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTR3" /translation="MQSFIGGSIRLGQRHGFYSWSGAHFKANRAYLATNNSSSLIHGS NNSINSSRNHLLQSLGTRLGSQTKELMLPGCSGGCSMPGLSQLAAMMSTCSSRSMTTA ASPTPDSSQSVTDVPPRIKFKRLDKTAKHILQILDKEAVEEVKAQREIPDIKPGNIVQ LRVEVPENKRRVSTIKGIVIARRNAGLNTTFRLRRMVAGVGVESLFPLYSPNIKEIKV LDKKTVRRAKLYYLRDKMNALR" CDS complement(join(22691837..22691936,22693947..22694080, 22694177..22694263,22694335..22694577,22694815..22694994)) /locus_tag="TCM_014485" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29827.m002670" /codon_start=1 /product="Ribosomal protein L19 family protein isoform 1" /protein_id="EOY22265.1" /db_xref="TAIR:AT4G11630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S1T8" /translation="MQSFIGGSIRLGQRHGFYSWSGAHFKANRAYLATNNSSSLIHGS NNSINSSRNHLLQSLGQTRLGSQTKELMLPGCSGGCSMPGLSQLAAMMSTCSSRSMTT AASPTPDSSQSVTDVPPRIKFKRLDKTAKHIMQESIFFLILDKEAVEEVKAQREIPDI KPGNIVQLRVEVPENKRRVSTIKGIVIARRNAGLNTTFRLRRMVAGVGVESLFPLYSP NIKEIKVLDKKTVRRAKLYYLRDKMNALR" mRNA complement(join(22692200..22692582,22693947..22694080, 22694177..22694269,22694359..22694574,22694815..22695173)) /locus_tag="TCM_014485" /product="Ribosomal protein L19 family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007636001" /inference="similar to AA sequence:Phytozome:GSVIVT01007636001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc678t1; inference alignment:Newbler:10:TSA:cgbaP1_g06805t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8687t2" CDS complement(join(22692549..22692582,22693947..22694080, 22694177..22694269,22694359..22694574,22694815..22694994)) /locus_tag="TCM_014485" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ribosomal protein L19 family protein isoform 3" /protein_id="EOY22267.1" /db_xref="Phytozome:GSVIVT01007636001" /db_xref="TAIR:AT1G24240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTR3" /translation="MQSFIGGSIRLGQRHGFYSWSGAHFKANRAYLATNNSSSLIHGS NNSINSSRNHLLQSLGTRLGSQTKELMLPGCSGGCSMPGLSQLAAMMSTCSSRSMTTA ASPTPDSSQSVTDVPPRIKFKRLDKTAKHILQILDKEAVEEVKAQREIPDIKPGNIVQ LRVEVPENKRRVSTIKGIVIARRNAGLNTTFRLRRMVAGVGVESLFPLYYLTYCNHHD " mobile_element complement(22699293..22699660) /note="source:CACAO_M_E23991_F4_scaffold_4 2866 3201" /mobile_element_type="retrotransposon:LTR/Copia" gene 22700842..22702337 /locus_tag="TCM_014486" /note="dbxref CacaoGD:Thecc1EG014486" mRNA 22700842..22702337 /locus_tag="TCM_014486" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010569t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09600.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07352t00001" CDS 22701108..22702088 /locus_tag="TCM_014486" /note="paralog of Thecc1EG010569t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22268.1" /db_xref="Phytozome:POPTR_0015s09600.1" /db_xref="TAIR:AT4G12690.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5N869" /translation="MQDPIGIPACFSSGEKPSDDPAAVTRSGQSVFMSVYRTKIADQC RLITVTWCKNLLLHGLSVSVEGHEGESQYTCKVELKPWYFWRKQGSKRFIVDGKAVDI FWDLKTAKFNGETEPSSEYYVVVVCDEEVVLLLGDLKKEAYRKTGCRPALIDPILISR KEHRFGKKKFSTRVKFHEKSRFHEISIECRNRSATNGSMSNVNSFGGVEPEMEIRIDG HLVLHVKHLQWKFRGNESIHVNKTRVEVYWDVHDWLFSPGLRHALFIFKPILSSTSLS SLSTSSSPPLSSSLTSTPLSSQTGSSGSLEGLNPGRSSEFSLFLYAWKVE" gene complement(22703760..22707675) /locus_tag="TCM_014487" /note="dbxref CacaoGD:Thecc1EG014487" mRNA complement(join(22703760..22704448,22704639..22704788, 22704940..22705011,22705106..22705238,22705324..22705410, 22705515..22705595,22706018..22706223,22706388..22707061, 22707159..22707675)) /locus_tag="TCM_014487" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m013856" /inference="similar to AA sequence:ricco:30147.m013856" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1397t1" CDS complement(join(22704351..22704448,22704639..22704788, 22704940..22705011,22705106..22705238,22705324..22705410, 22705515..22705595,22706018..22706223,22706388..22707061, 22707159..22707547)) /locus_tag="TCM_014487" /note="dbxref ricco:30147.m013856" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22269.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IEZ3" /translation="MDRKLSTESSLQKKALENRRRAEHVPDLTDFMNDMFFGTVNDDK KAYYNLTGTGKLMDDDEDFESSTRSNSSKLTQEWLEEARRMVASSPSRCDSPTRPVGS PRFAAQPGRFSVSSSLERRDPLSRSARRLRPMEGFSGEILSKSAKHSRNKSETLDSLN SPVDMSPAEAVHKWFSNILKPTNHTPLSSGPPSPTTDHTAAPALPPRQSSLRKSRFQV DAPAPHAQGIPVPSRRTFKPQAPSQDTQLLSPPKNLIESAQRRSISYSTCSYPENKPL SPPRNLVESAQRRSISKSTCSLENIAPRSNSNGWSKEEDGTREVGLNEFLKEQRTKIE MILNGEVDFRAKIVLSGPSNSTSSMVAAICYACLQENRARKNKGEGDEDGCIVVPVMN VRRERMWKQRQAAWLFHHVGLDATSLLFSDEVDLESLMMAGQLSILVVGQDILRTNGE VGSPCTILTDNYCEDAYDLLQTPALKKLLLAGILLDTQNLNAYTKLSMARDAEAVQLL LVGSAPNYRNAVFDQLMQDQRDNSFFEALRHNYGKPPHDGGYDNGVQMELTVPERKST SISSHEASVRNSDKNSNDARNAKINKAPPKSATLPAKAPPAAPEVSRGKNKFFLAKWF GFGSK" gene 22710111..22712059 /locus_tag="TCM_014488" /note="dbxref CacaoGD:Thecc1EG014488" mRNA join(22710111..22710344,22711271..22712059) /locus_tag="TCM_014488" /product="Nitrate transmembrane transporters" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007624001" /inference="similar to AA sequence:frave:gene09962" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05450t00001" CDS join(22710218..22710344,22711271..22711752) /locus_tag="TCM_014488" /note="dbxref frave:gene09962" /codon_start=1 /product="Nitrate transmembrane transporters" /protein_id="EOY22270.1" /db_xref="TAIR:AT5G50200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHH0" /translation="MAARGLLLASFLLFSCFAETYGMISFSSLPRTLVVTASHRQGLL KADEDKITVIWGLNQSFPAGTDSAYTTIKVKLCYAPISQVDRAWRKTVDHLSKDKTCQ FKIVSRPYSNTNQTFQWTIERDVPTATYFVRAYAFNAEDHEVAYGQNTDAKKTTNLFE IQAITGRHVSLDIASVCFSAFSIVALMGFFFAEKRKGRKAQQ" mobile_element 22710402..22710476 /note="source:scaffold_1_CACTA_0011 7445 7520" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22713256..22713968 /note="source:CACAO_Again_on_E86_scaffold_3 1 713" /mobile_element_type="transposon:TIR/hAT" mobile_element 22717016..22717540 /note="source:scaffold_8_CACTA_0863 3378 3927" /mobile_element_type="transposon:TIR/CACTA" gene complement(22717618..22721278) /locus_tag="TCM_014489" /note="dbxref CacaoGD:Thecc1EG014489" mRNA complement(join(22717618..22718293,22718843..22718903, 22719049..22719538,22720946..22721278)) /locus_tag="TCM_014489" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010900t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(22717697..22718293,22718843..22718903, 22719049..22719116)) /locus_tag="TCM_014489" /note="paralog of Thecc1EG010900t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22271.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AXU2" /translation="MRWCASHSVGDLLEGAQAQGISRCDEKLEGATISTWTEFQREYG LMFANIMVNGQMLEALVNTKASNLFVTKGAVKKLSLKPNRKASFIKMMNSKEIPTMGS TIVNVQLGAWKGKQPIGVIPMDGYDCVIGIGFLNKINALLVPFVNCICVLGTKGQCVV PVKKRCNLNAKLLSTMQLVKGAQRIEETFVAILKLEDTLRAFVKASIEVLDEFKGVIL ASLPNRLPLQREIDHHIEVEPRA" mobile_element 22720579..22720681 /note="source:scaffold_9_CACTA_0921 4133 4237" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22721973..22722798 /note="source:CACAO_Again_on_S_E199_scaffold_6 1 830" /mobile_element_type="transposon:TIR/hAT" gene complement(22723533..22727173) /locus_tag="TCM_014490" /note="dbxref CacaoGD:Thecc1EG014490" mRNA complement(join(22723533..22724838,22726990..22727173)) /locus_tag="TCM_014490" /product="Calcineurin-like metallo-phosphoesterase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007623001" /inference="similar to AA sequence:frave:gene09965" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02858t00001" CDS complement(22723857..22724825) /locus_tag="TCM_014490" /note="dbxref frave:gene09965" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein" /protein_id="EOY22272.1" /db_xref="TAIR:AT4G24730.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DPB3" /translation="MGSANRLTNGQGRHPLFSFGVISDVQYADIPDGCSFIGVPRYYR HSILVLQRAVKSWNNLKNLNFAINFGDIVDGRCPKDQSVNAVNKVVGEFEKFNGPLYH IIGNHCLYNLPRDKLLPLLKIPNPRGGGHGYYDFSPTPEYRFVVLDGYDISAIGWPHD HPNTLEALEFLRRKNPNSNKNSPEGLEGLDRRFLMFNGAVGKEQMEWLDGVLQDATNL KQKVIVCCHLPLDPSASGQEALLWNYDQVMDVIHRYKCVKVCLAGHDHEGGHSIDSHG IHHRVLEAALECPPGTFAYGYIDVYDNMLSLVGTDRMKSTNISFHP" gene complement(22728132..22734433) /locus_tag="TCM_014491" /note="dbxref CacaoGD:Thecc1EG014491" mRNA complement(join(22728132..22729080,22729225..22729386, 22730559..22731068,22732108..22732287,22732394..22732612, 22733043..22733327,22733459..22734248,22734377..22734433)) /locus_tag="TCM_014491" /product="Quinolinate synthase" /inference="alignment:exonerate- protein:2:TAIR:AT5G50210.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09690.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1043t3" CDS complement(join(22729000..22729080,22729225..22729386, 22730559..22731068,22732108..22732287,22732394..22732612, 22733043..22733327,22733459..22734214)) /locus_tag="TCM_014491" /codon_start=1 /product="Quinolinate synthase" /protein_id="EOY22273.1" /db_xref="Phytozome:POPTR_0015s09690.1" /db_xref="TAIR:AT5G50210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGS4" /translation="MEFSATIAMKASSSSSSFFSISQTQISNPKSLLFNFHKTPRTNK KSLYKSLKSIQSPPPGSPPSKPISFACSAVTLSPSQTAHLPPRKLSSLLSEFQSLLEP LDRVKRLLHYASLLPTLPASSRTDSNRVMGCTARVWLEVQMDSEGKMRFWADSDSEIT KGFCACLVSVLDGAAPEEVLGLKTEDLAALNVGLPGGARSRVNTWHNVLVSMQKRTRS LVSEKEGKAPFEPFPSLVITAEGVQPKGSYAEAQARYLFPDELKVKELVNVLKEKKIG VVAHFYMDPEVQGILTAAQKDWPYIHISDSLVMADTAVKMAKAGCKFITVLGVDFMSE NVRAILDQAGFGEVGVYRMSNERIGCSLADAAATPDYMNYLKAASNSLPSLHVIYINT SLETKAYAHELVPTITCTSSNVVQTILQAFTQIPDLNIWYGPDSYMGANIKELFEQMT LMSDEEIAELYPEHNRDSIKSLLPHLHYYEDGTCIVHHLFGREVVEKINEMYCDAFLT AHFEVPGEMFSLAMEAKRRGMGVVGSTQNILDFIKQRVQEALDRNVDDHLQFVLGTES GMVTAIVAAVRSLLDSSKSTSTAKINVEIVFPVSSDSMTKTSTSSSPVLESVKMGDVI LPVVPGVASGEGCSIHGGCASCPYMKMNSLTSLLKICHQLPDERDILEAYEAERFKLQ TPQGKNIADVGCEPILHMRHFQAKKELPEKLVYQVLGPHGNGKSLSIS" mobile_element complement(22735301..22735365) /note="source:CACAO_on_E22_A_scaffold_2 4903 4967" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22739108..22739273) /note="source:scaffold_4_CACTA_0482 7743 7910" /mobile_element_type="transposon:TIR/CACTA" gene 22742102..22744287 /locus_tag="TCM_014493" /note="dbxref CacaoGD:Thecc1EG014493" mRNA join(22742102..22743003,22743242..22744287) /locus_tag="TCM_014493" /product="Kinase family protein / peptidoglycan-binding LysM domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09700.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09700.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(22742232..22743003,22743242..22744074) /locus_tag="TCM_014493" /codon_start=1 /product="Kinase family protein / peptidoglycan-binding LysM domain-containing protein, putative" /protein_id="EOY22274.1" /db_xref="Phytozome:POPTR_0015s09700.1" /db_xref="TAIR:AT2G33580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF03" /translation="MVSLHKLISFCVLLFLIKLISSQQSYDDSSCTAESVQNSKYLCT PKDFPCHTYVVYRTQKDFQSMSSIAPLFNLSMSHLLEINHMTDADSSNLKLGREIIIP VQCSCALTFSKAIFMYHFSSTDSFASVACGVFQGLLKAQSLKEDNPDVKCNDPDDFMI KVPIRCACTNANQRRNGFKYLVTYPVIKNDNTDLIARKFGVPEETIWDANKLGPFSTI FPQTTLFIPTKDVPVVKWDVPEDLPSSPRVATPFVKIQPRTEDFNEGSMTGKALYKGP FCGSYVAIEQMNTEEAARHVIYILTKISHLNIVKLEGCCYGTNPYLVFEFAEYGSLRD CLSNANVARQLTWAKRTQIAFDLAVGLHYIHYCTKPSFIHHNIQSRNVLITTDWRAKI TGFTLAKPVNSSEENGEISWNESVILGRKGYLAPEYLTYGLASLKLDVFAFGVVLLEL LSAKEAAADGLFLKNPVISFEDAGHECSLGYLEKLKEFMDPVLEGKYPLVDAMCLAFL AKACVEQDPHHRPTMDNVIQALSRFV" gene complement(22744694..22746977) /locus_tag="TCM_014494" /note="dbxref CacaoGD:Thecc1EG014494" mRNA complement(join(22744694..22745625,22745734..22746977)) /locus_tag="TCM_014494" /product="Cytochrome P450" /inference="alignment:exonerate-protein:2:frave:gene09984" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014496t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s09140.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g4978t1" CDS complement(join(22745017..22745625,22745734..22746696)) /locus_tag="TCM_014494" /note="paralog of Thecc1EG014496t1" /codon_start=1 /product="Cytochrome P450" /protein_id="EOY22275.1" /db_xref="Phytozome:POPTR_0012s09140.1" /db_xref="TAIR:AT3G48310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3I1" /translation="MFLTFVHVRCRTEEIMSPAIMLKQYNATVLLNPVLFLPLLFSIL YLIKLLRSSKLKLPPSPPKLPIIGNIHQVGKLPHRSFRTLSEKYGPLMLLHMGQTPTL VVSSAEIAREIMMAHDAFTERPRIRVADTLFCGCTDIAFCPYGDYWRQAKKICVLELL TQRRVRMFQLVREQEVSRMVENIRQSCHSGSSIGLCEMFETIANNIISRSVLGRVYER EDGNKSFGELSRRAMDLLGSFCFRDFFPSLGWMDVLTGLTAKLERISSELHTFLDQVI EEHLVLMNDDDKSDNKDFVDILLHLQQDGMLDIGLTQENLKAIVLDMFMGGTDNIAAT MVWAMAELVKNPSIMKKAQEEVRRVVGRNSSVTETDINETDYLKCVVKETLRLHAPVM VSRQNPTGTKLQGYDIPPKTIVLVNTWAIQRDPELWDKPEEFIPERFLNSSVDFKGQY SQFTPFGAGRRGCPGISFAVAGAEYVLANLLYWFDWKLPDSQSCEDLDMDDYYALVIR KKVPLHLVPMLPSFS" mobile_element complement(22747658..22747766) /note="source:INTACT687_F13_scaffold_3-int 1945 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22750099..22751872 /note="source:INTACT1604F_F75_scaffold_10-int 3296 5075" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22753566..22753886 /note="source:CACAO_M_S_E16683_F28_scaffold_2 571 889" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22753886..22755444 /note="source:scaffold_10_CACTA_0130 6253 7865" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22756447..22756870 /note="source:INTACT579_F10_scaffold_3-int 3158 3596" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22757849..22758007 /note="source:INTACT444_F216_scaffold_4-int 18986 19144" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22758333..22759366 /note="source:INTACT444_F216_scaffold_4-int 1853 2887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22761878..22763569 /note="source:scaffold_10_CACTA_0130 7922 9602" /mobile_element_type="transposon:TIR/CACTA" gene complement(22764550..22766930) /locus_tag="TCM_014496" /note="dbxref CacaoGD:Thecc1EG014496" mRNA complement(join(22764550..22765307,22765421..22766930)) /locus_tag="TCM_014496" /product="Cytochrome P450 71A1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g18560.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014494t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s14440.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc8563t1" CDS complement(join(22764693..22765307,22765421..22766389)) /locus_tag="TCM_014496" /note="paralog of Thecc1EG014494t1" /codon_start=1 /product="Cytochrome P450 71A1" /protein_id="EOY22276.1" /db_xref="Phytozome:POPTR_0016s14440.1" /db_xref="TAIR:AT3G48310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3I1" /translation="MGFKGPTASFYDYICKMELLPLVALNVAKLYNPLFLCVILLFSL VIWLKLAKGKKLNLPPSPPKLPIIGNIHQLGKLPHRSFRDLSRKYGSLLLLQLGHNPT LVVSSAEMAREIVKNHDIVFSNRPRTTAANILLYGCGDIGFAPYGEYWRQVRKTSVLE LFSLRRVHSFQFVRDEEVELLINKIHRASLKGQSINLTEMLMTVSNNIVSRCVLSRRA EEEDGSNKFGQLARRIMVLLTSFCVGDMFPYLRWLDVLTGFIPSLKAAFGEIDAFLGQ VIEEHRGLKSHDHMTDKMDFVSIILQLQTDGMLEMDLTQDNIKAILLDMFVGGTDTTS TTIEWLMAELLQHPNVMKKVQEEVRSVVGKKSKVDVEDINKMVYLKCVIKETLRLHPP VPLLVPRETSASVKLGGYDIPSNTTVFINAWAIQRDPNWWDKPEEFIPERFENVAIDF KGQDFQFIPFGCGRRGCPGMPFGVASVEYVIANLLYLFDWKLPDGEIAENLDMSELYG LTVNKKVPLQALPISRLSM" mobile_element complement(22769905..22772824) /note="source:CACAO_M_E44086_F33_scaffold_5 1 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22773338..22773412 /note="source:scaffold_5_CACTA_0607 10015 10093" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22774056..22774156) /note="source:scaffold_7_CACTA_0785 10889 10981" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22779116..22780813 /note="source:scaffold_10_CACTA_0130 7927 9603" /mobile_element_type="transposon:TIR/CACTA" gene complement(22783539..22791477) /locus_tag="TCM_014497" /note="dbxref CacaoGD:Thecc1EG014497" mRNA complement(join(22783539..22783869,22783950..22784052, 22784144..22784241,22784332..22784396,22784489..22784645, 22784770..22784861,22785128..22785242,22785338..22785386, 22785492..22785645,22785740..22785766,22786237..22786453, 22787028..22787259)) /locus_tag="TCM_014497" /product="FUS3-complementing gene 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007619001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022010t2" /inference="similar to AA sequence:ricco:30147.m013850" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00560t00001; alternateUTRof:Thecc1EG014497t1; inference alignment:Newbler:10:TSA:cgbaP2_g00014t00002_C1" mRNA complement(join(22783539..22783869,22783950..22784052, 22784144..22784241,22784332..22784396,22784489..22784645, 22784770..22784861,22785128..22785242,22785338..22785386, 22785492..22785645,22785740..22785766,22787028..22787192)) /locus_tag="TCM_014497" /product="FUS3-complementing gene 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007619001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022010t2" /inference="similar to AA sequence:ricco:30147.m013850" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00560t00003; inference alignment:Newbler:10:TSA:cgbaP2_g00014t00002_C1" mRNA complement(join(22783540..22784052,22784144..22784241, 22784332..22784396,22784489..22784645,22784770..22784861, 22785128..22785242,22785338..22785386,22785492..22785645, 22785740..22785766,22786237..22786453,22787028..22787252)) /locus_tag="TCM_014497" /product="FUS3-complementing gene 2 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007619001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022010t2" /inference="similar to AA sequence:ricco:30147.m013850" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00014t00001_C1; inference alignment:Newbler:10:TSA:cgbaP2_g00014t00002_C1" mRNA complement(join(22783544..22783869,22783950..22784052, 22784144..22784241,22784332..22784396,22784489..22784645, 22784770..22784861,22785128..22785242,22785338..22785386, 22785492..22785645,22785740..22785766,22786237..22786453, 22787028..22787416,22791341..22791477)) /locus_tag="TCM_014497" /product="FUS3-complementing gene 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007619001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022010t2" /inference="similar to AA sequence:ricco:30147.m013850" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00014t00002_C1" CDS complement(join(22783723..22783869,22783950..22784052, 22784144..22784241,22784332..22784396,22784489..22784645, 22784770..22784861,22785128..22785242,22785338..22785386, 22785492..22785645,22785740..22785766,22786237..22786453, 22787028..22787129)) /locus_tag="TCM_014497" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013850; paralog of Thecc1EG022010t2" /codon_start=1 /product="FUS3-complementing gene 2 isoform 1" /protein_id="EOY22277.1" /db_xref="TAIR:AT4G24740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51566" /translation="MEMERVTEFPHTHMDRRPRKRPRLGWDVTQLPPQAQVGMFCAQE VGNLTSFASSTARAPSDYTSTITTSSSLVVKGGVARNGSPPWREDDKDGHYMFELGDN LTSRYKIQSKMGEGTFGQVLECWDRETKDVVAIKIVRGIKKYREAAMIEIEMLQQLGK HDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLE CVAFMHDLHLIHTDLKPENILLVSPEYVKVPDYKSTSRSPKDNSYFKRLPKSSAIKVI DFGSTTYERQDQTYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTH ENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRCRLDWPDGATSSGSIKAVLKLPRL QNLIMQHVDHSAGDLIHLLQGLLRYDPIDRLTAREALRHPFFSRDQFRR" CDS complement(join(22783723..22783869,22783950..22784052, 22784144..22784241,22784332..22784396,22784489..22784645, 22784770..22784861,22785128..22785242,22785338..22785386, 22785492..22785645,22785740..22785766,22786237..22786453, 22787028..22787129)) /locus_tag="TCM_014497" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013850; paralog of Thecc1EG022010t2" /codon_start=1 /product="FUS3-complementing gene 2 isoform 1" /protein_id="EOY22278.1" /db_xref="TAIR:AT4G24740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51566" /translation="MEMERVTEFPHTHMDRRPRKRPRLGWDVTQLPPQAQVGMFCAQE VGNLTSFASSTARAPSDYTSTITTSSSLVVKGGVARNGSPPWREDDKDGHYMFELGDN LTSRYKIQSKMGEGTFGQVLECWDRETKDVVAIKIVRGIKKYREAAMIEIEMLQQLGK HDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLE CVAFMHDLHLIHTDLKPENILLVSPEYVKVPDYKSTSRSPKDNSYFKRLPKSSAIKVI DFGSTTYERQDQTYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTH ENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRCRLDWPDGATSSGSIKAVLKLPRL QNLIMQHVDHSAGDLIHLLQGLLRYDPIDRLTAREALRHPFFSRDQFRR" CDS complement(join(22783723..22783869,22783950..22784052, 22784144..22784241,22784332..22784396,22784489..22784645, 22784770..22784861,22785128..22785242,22785338..22785386, 22785492..22785645,22785740..22785749)) /locus_tag="TCM_014497" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m013850; paralog of Thecc1EG022010t2" /codon_start=1 /product="FUS3-complementing gene 2 isoform 3" /protein_id="EOY22279.1" /db_xref="TAIR:AT4G24740.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P51566" /translation="MGEGTFGQVLECWDRETKDVVAIKIVRGIKKYREAAMIEIEMLQ QLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGR QLLECVAFMHDLHLIHTDLKPENILLVSPEYVKVPDYKSTSRSPKDNSYFKRLPKSSA IKVIDFGSTTYERQDQTYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEAL FQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRCRLDWPDGATSSGSIKAVLK LPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPIDRLTAREALRHPFFSRDQFRR" CDS complement(join(22783914..22784052,22784144..22784241, 22784332..22784396,22784489..22784645,22784770..22784861, 22785128..22785242,22785338..22785386,22785492..22785645, 22785740..22785766,22786237..22786453,22787028..22787129)) /locus_tag="TCM_014497" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m013850; paralog of Thecc1EG022010t2" /codon_start=1 /product="FUS3-complementing gene 2 isoform 4" /protein_id="EOY22280.1" /db_xref="TAIR:AT4G24740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51566" /translation="MEMERVTEFPHTHMDRRPRKRPRLGWDVTQLPPQAQVGMFCAQE VGNLTSFASSTARAPSDYTSTITTSSSLVVKGGVARNGSPPWREDDKDGHYMFELGDN LTSRYKIQSKMGEGTFGQVLECWDRETKDVVAIKIVRGIKKYREAAMIEIEMLQQLGK HDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLE CVAFMHDLHLIHTDLKPENILLVSPEYVKVPDYKSTSRSPKDNSYFKRLPKSSAIKVI DFGSTTYERQDQTYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTH ENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRCRLDWPDGATSSGSIKAVLKLPRL QVFCIMNFKHLN" mobile_element complement(22787539..22787619) /note="source:CACAO_M_E14081_F316_scaffold_3 15379 15459" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22787762..22787906) /note="source:CACAO_M_S_E122136_F76_scaffold_10 18301 18445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22788688..22790233 /note="source:CACAO_M_E22898_F17_scaffold_3 1 1546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22792243..22793014) /note="source:CACAO_M_E84995_F60_scaffold_10 4357 5128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22793129..22793853 /note="source:CACAO_M_E3676_F243_scaffold_1 2615 3338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22795644..22797386 /note="source:INTACT280_F60_scaffold_5-int 1 1742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22803190..22804117 /note="source:INTACT674_F296_scaffold_6-int 4591 5526" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22807418..22813640 /locus_tag="TCM_014499" /note="dbxref CacaoGD:Thecc1EG014499" mRNA join(22807418..22807594,22808966..22809862, 22809997..22810137,22810645..22811266,22812808..22812909, 22813010..22813640) /locus_tag="TCM_014499" /product="Cytochrome P450, family 71, subfamily A, polypeptide 24" /inference="similar to AA sequence:frave:gene09984" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS join(22809402..22809862,22809997..22810137, 22810645..22811266,22812808..22812909,22813010..22813561) /locus_tag="TCM_014499" /note="dbxref frave:gene09984" /codon_start=1 /product="Cytochrome P450, family 71, subfamily A, polypeptide 24" /protein_id="EOY22281.1" /db_xref="TAIR:AT3G48290.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF07" /translation="MNHNLVANMFHYFCINVLPFLLFVIFLVKWLLASPSTANKSLPP SPPKLPILGNLHQLGRHPHRSLRSIAQRYGPDFMLLYFSSIPALIVSSADAARTIMKT HDVIFSDRPQIGAAKKLLNQDMSTAKKLLNQDTKYWRQLRSICRLQLLKTRGVAFGRK YSGDGVGKNVPVDAWGVDEVVGHFQNWGFYPAACLDKPCQWAKLRFYMISFKIRFLYD LFSGGTDTTDRVLEWAMTELLRHPRVMKILQNEVREIGSGKPNITEDDINRMDYLKAV IKETLRLHPPLLLLVPRGSTQDVNIKGYDIEERKLVIVNAWAIGRDPVHWNEPEEFRP ERFLNNPIGFKGNDFQYTPFGDGRRGCPGMAFAMAMNEIILVNQVHKFDWSLPGGTTG EDLDMTETTGIAIHRKDTFAAGTDTTNTVLEWAMTELLRHPKIVKELQKQAVSKETLR LHPPVALLVPRISTKNVKIKGSDIEGGTQVIINAWAIGRDTKSWDKREEYLPDRFLEH SIDFKGHHLQLIPFGSGRTSCPVILFAMKINELSPNLVHKFDWSLPGGANEKDLDMSE TFSITTHRKLISSRLSYLLSTIKDENHKTLISQNIVTRFWTKDYEIKTTNNIGGSKAL K" gene 22813512..22816207 /locus_tag="TCM_014500" /note="dbxref CacaoGD:Thecc1EG014500" mRNA join(22813512..22814954,22815343..22816207) /locus_tag="TCM_014500" /product="Cytochrome P450, family 71, subfamily A, polypeptide 25, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007618001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014501t1" /inference="similar to AA sequence:ricco:30147.m013846" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc4468t3" CDS join(22813989..22814954,22815343..22815954) /locus_tag="TCM_014500" /note="dbxref ricco:30147.m013846; paralog of Thecc1EG014501t1" /codon_start=1 /product="Cytochrome P450, family 71, subfamily A, polypeptide 25, putative" /protein_id="EOY22282.1" /db_xref="TAIR:AT3G48280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF07" /translation="MSKFLKFSEQDEIFFLSYPWLFAILAIFFVVLLKHIFNPSTSNA KLALPPSPSKFPIFGNLHNIGLQPHRSLRALAQRFGPLMLLHLGSVPVLVVSSSDAAR EIMKTHDLTFANRPKSSSSQKLLYDYKDVSSAPYGEYWRQMKSACVLHFLSNKRVQSF RVVREEETALIIDKIKESSSSALPVNLTEIFAMLTNNVICRAALGRKYSEGEGGKKFK KLLCEFVELLGGFNVGDYIPWLAWVSRINGLEAKMEKVAKEFDAFLEGVVDEHMDRYK RGHNDHDDTRLQHEEQKSFVDVLLEIQRENTVGFPLERVSVKALILDMFAAGTDTTYT VLEWAMTELLRHPEIMKELQKEVRQVCGDETYVSEDDLDKMHYLKAVIKESLRLHPPI PLLVPRISTEDVKIKGYDIARGTQVIINAWAIGRDPLSWAKPEEFLPERILNNSIDFK GHDFELIPFGSGRRICPGILFAMKINELFLANLVHKFDWSLPGGAKEEDLDMGESFGL TTHRRYPLIAIANPSSF" mobile_element 22816425..22816701 /note="source:CACAO_on_E18_scaffold_1 7535 7821" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 22819972..22823816 /locus_tag="TCM_014501" /note="dbxref CacaoGD:Thecc1EG014501" mRNA join(22819972..22821173,22821271..22822350, 22822569..22822821,22823785..22823816) /locus_tag="TCM_014501" /product="Cytochrome P450 71A1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001771t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09760.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc963t1_C2" CDS join(22820256..22821173,22821271..22821882) /locus_tag="TCM_014501" /note="paralog of Thecc1EG001771t1" /codon_start=1 /product="Cytochrome P450 71A1" /protein_id="EOY22283.1" /db_xref="Phytozome:POPTR_0015s09760.1" /db_xref="TAIR:AT3G26300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P24465" /translation="MASLQWLKESCSPFLLFASIFLLILLQFLLKGKSSKRNRNLPPG PPKLPIIGNLHQLGSMPHLSLRRLAEKFGPIMYLQLGEVPTVVVSSARMAKEVMKTHD LALASRPQIFSAKHLFYDCTDVVFSPYGAYWRHIRKICILELLSAKRVQSFGFVREEE VARLIHRIGEYSYPSTVNLSKVLGLYANDVLCRVAFGRDFSQGGDYDRHGFQKMLEDY QELLGGFSTGDFFPSMEFIHNLTGMKSRLQHTFRRFDQFFDEVINEHLNPKRQKEEHS KDLVDVLLDVQKNVSNEIPLTMDNVKAIILDMFAAGTDTTFITLDWGMTELIMNPKVL ERAQAEVRKVVGERRVVLESDLPQLDYMKAVIKEIFRLHPPAPVLVPRESTEDIRING FDIPAKTRVFVNAWAIGRDPESWENPESFEPERFLGSPIDFKGQDFELIPFGAGRRSC PAITFGTATVELAVAQLLHSFDWELPPGTEAKDLDMTETFGITMHRIADLTVIAKPHF P" gene complement(22822556..22827544) /locus_tag="TCM_014502" /note="dbxref CacaoGD:Thecc1EG014502" mRNA complement(join(22822556..22822811,22823772..22824149, 22824243..22824315,22824769..22824836,22824966..22825053, 22825923..22825997,22826129..22826168,22826304..22826400, 22826829..22826936,22827167..22827262,22827386..22827544)) /locus_tag="TCM_014502" /product="Rhodanese/Cell cycle control phosphatase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09770.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09770.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g08008t00001" CDS complement(join(22824066..22824149,22824243..22824315, 22824769..22824836,22824966..22825053,22825923..22825997, 22826129..22826168,22826304..22826400,22826829..22826936, 22827167..22827262,22827386..22827523)) /locus_tag="TCM_014502" /codon_start=1 /product="Rhodanese/Cell cycle control phosphatase superfamily protein" /protein_id="EOY22284.1" /db_xref="Phytozome:POPTR_0015s09770.1" /db_xref="TAIR:AT4G24750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF10" /translation="MASLTLPSLNASTISRLNEQKATSLNSSSSRISSFRRRPTSTNQ RFQCGVIRMQAGEEDFELKQMRDMAAAKKRWDAMIREGKVKVLTPREAGYAIQLSNKP LLDVRPSSEREKAWAKGSIWVPIFDIDNKFEVGTLSRKVTNFVMGGWWSGTPTVSYDR QFLSKVEEKFPKDAELIVACQKGLRSLAACEVLCNAGYRNLFWVQGGLEAAEEEDLAR EGTQPLKFAGIGGLSEFLGWTDQQRVQAAREGWGYRLLYSARLIGLFVAADAFFIGAQ QVARYLQDLRSH" mobile_element 22832743..22834600 /note="source:CACAO_hAT_E1468_scaffold_3 1 1858" /mobile_element_type="transposon:TIR/hAT" gene 22834491..22837004 /locus_tag="TCM_014504" /note="dbxref CacaoGD:Thecc1EG014504" mRNA join(22834491..22834748,22834923..22835503, 22835626..22837004) /locus_tag="TCM_014504" /product="Cytochrome P450 71A9, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g02760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036397t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400052932" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(22834619..22834748,22834923..22835503, 22835626..22836237) /locus_tag="TCM_014504" /note="paralog of Thecc1EG036397t1" /codon_start=1 /product="Cytochrome P450 71A9, putative" /protein_id="EOY22285.1" /db_xref="Phytozome:PGSC0003DMP400052932" /db_xref="TAIR:AT3G26300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81970" /translation="MNFRLILTLLMIAMAPLVLLINQEKKNVRARRLPPGPWKIPVIA DLYVARKFSYNLNSISFAPYGAFWREIRKIAILELLSSKRVQSFRAVRDEEAAFMLTH IACSSGPVNLNKQSLALTNNVVCRVAFAKRFGGNDGTSRFDALMHDTQVRLGEFPLSD FFSWMRWLNKFNGLEERVERNFRELDKFYDEVIEEHLDPTRPKLDNHEDIVDVLIRIQ KHPSQGITLSNQHIKGILTDMFFAGTDTTASTLVWTLTELIRNPSLMERAQAEVREVA KGRGKVEESDLRKLVYLELIIKEALRLHPPAPLLVPRETTEDCTVGDYTIPVKTRVLV DVRSIGADPKYWENPNEFRPDKFLNSSIDFNGQHFEFLPFGVGRRGCPGSSFAILLVQ LALANLLHCFDWELPDGMSIEDVDMEEEFGLTMFKKTPLCLVARTVGE" gene complement(22836315..22842179) /locus_tag="TCM_014505" /note="dbxref CacaoGD:Thecc1EG014505" mRNA complement(join(22836315..22836460,22836563..22836716, 22836814..22836956,22839768..22839803,22842108..22842179)) /locus_tag="TCM_014505" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(22836434..22836460,22836563..22836716, 22836814..22836956,22839768..22839785)) /locus_tag="TCM_014505" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22286.1" /translation="MVMKTMCSRRWGVVEAVTSLLNTISVHNIDTVNRLARDVLAYHF SLVAITYVRGNYILLLCNFDDPLLWGFKGFLPLDAKLACWVIAAKDICFKNSLLAYVF LHLGVFRAAEF" gene 22842268..22848576 /locus_tag="TCM_014506" /note="dbxref CacaoGD:Thecc1EG014506" mRNA join(22842268..22842681,22843756..22843825, 22843927..22844300,22845407..22845491,22845567..22845707, 22845795..22845908,22846025..22846122,22846992..22847071, 22847148..22847253,22847363..22847490,22847594..22847774, 22847945..22848001,22848091..22848228,22848468..22848570) /locus_tag="TCM_014506" /product="RING domain ligase2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026581" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017007t4" /inference="similar to AA sequence:ricco:30147.m013839" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00538t00004" mRNA join(22842548..22842681,22843978..22844300, 22845407..22845491,22845567..22845707,22845795..22845908, 22846025..22846122,22846992..22847071,22847148..22847253, 22847363..22847490,22847594..22847774,22847945..22848001, 22848091..22848228,22848468..22848576) /locus_tag="TCM_014506" /product="RING domain ligase2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026581" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017007t4" /inference="similar to AA sequence:ricco:30147.m013839" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00538t00004; alternateUTRof:Thecc1EG014506t1; inference alignment:Newbler:10:TSA:cgbaB_g00538t00004; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc628t14_C1" CDS join(22844001..22844300,22845407..22845491, 22845567..22845707,22845795..22845908,22846025..22846122, 22846992..22847071,22847148..22847253,22847363..22847490, 22847594..22847774,22847945..22848001,22848091..22848171) /locus_tag="TCM_014506" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013839; paralog of Thecc1EG017007t4" /codon_start=1 /product="RING domain ligase2 isoform 1" /protein_id="EOY22287.1" /db_xref="TAIR:AT5G14420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS90" /translation="MGGVTSKRSATAQSSSVGSNSHSWDHQRYAQPSYAPSSRDYSWD HQRYAQPSYAPSSRDYVPQQHYAPPLQSYGGRAPESNRRLERKYSKIDDNYNSLEQVT EALARAGLESSNLIVGIDYTKSNEWTGARSFHRRSLHHIGDEQNPYEQAISIIGKTLS SFDEDNLIPCFGFGDASTHDQEVFSFYPDETFCNGFEEVLRRYRELVPNLRLAGPTSF APIIEMAITIVEQSGGQYHVLLIIADGQVTRSVDTERGQLSPQEMKTVEAIVRASDYP LSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKEAEFALAAL MEIPSQYKATLELSILGTSRGKDIDRVPLPPPLYGAASFSNSKPSRSSSFRPTPPSSG RYDAPVRTTPSASSASDNHVCPICLCNPKDMAFGCGHQTCCECGQDLQLCPICRSTID TRIRLY" CDS join(22844001..22844300,22845407..22845491, 22845567..22845707,22845795..22845908,22846025..22846122, 22846992..22847071,22847148..22847253,22847363..22847490, 22847594..22847774,22847945..22848001,22848091..22848171) /locus_tag="TCM_014506" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013839; paralog of Thecc1EG017007t4" /codon_start=1 /product="RING domain ligase2 isoform 1" /protein_id="EOY22288.1" /db_xref="TAIR:AT5G14420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS90" /translation="MGGVTSKRSATAQSSSVGSNSHSWDHQRYAQPSYAPSSRDYSWD HQRYAQPSYAPSSRDYVPQQHYAPPLQSYGGRAPESNRRLERKYSKIDDNYNSLEQVT EALARAGLESSNLIVGIDYTKSNEWTGARSFHRRSLHHIGDEQNPYEQAISIIGKTLS SFDEDNLIPCFGFGDASTHDQEVFSFYPDETFCNGFEEVLRRYRELVPNLRLAGPTSF APIIEMAITIVEQSGGQYHVLLIIADGQVTRSVDTERGQLSPQEMKTVEAIVRASDYP LSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKEAEFALAAL MEIPSQYKATLELSILGTSRGKDIDRVPLPPPLYGAASFSNSKPSRSSSFRPTPPSSG RYDAPVRTTPSASSASDNHVCPICLCNPKDMAFGCGHQTCCECGQDLQLCPICRSTID TRIRLY" gene 22848639..22851435 /locus_tag="TCM_014507" /note="dbxref CacaoGD:Thecc1EG014507" mRNA join(22848639..22848722,22848820..22848891, 22849204..22851435) /locus_tag="TCM_014507" /product="Glyoxal oxidase-related protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026581" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034166t1" /inference="similar to AA sequence:Phytozome:Glyma06g18490.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc626t8" CDS 22849480..22851168 /locus_tag="TCM_014507" /note="paralog of Thecc1EG034166t1" /codon_start=1 /product="Glyoxal oxidase-related protein" /protein_id="EOY22289.1" /db_xref="Phytozome:Glyma06g18490.1" /db_xref="TAIR:AT1G14430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2X8C7" /translation="MEDKKNLLSIIIPAVFALLHFVVSGAVGASSGGRKGTWQLLRQN TGVVAMHMALTNRNTVIIFDQTGAGPSRYRLRRRYSGKRCTRAREDLEDWSCYAHSVE YNIDGHNVRSLRLDTDTWCSSGTFLSNGTLLQTGGHGSGSQKVRYFSPCSNGQCNWRQ SKRSLSDDRWYASNQLLPENDRVIVVGGRRVFSYEFVPKLHSSDRSFNLPFLRKTNNK NAGGNNLYPFLHLSSDGNLFIFANRDSILFNYRQHKVIKTFPRIPGGGSRNYPSSGSS VILPLNHEDRFRKVEVMVCGGAASGAYEVAERGTFLKALSSCGRMVISGNRHKWKMEN MPGPRTMHDMLILPTGHILIINGAKRGCAGWNNAATPSLQPYLYKPKKTLGKRFSVLK STKIARMYHSSALVLPDGRILVAGGNPNNRYIFRNVSYPTELRLQAFIPNYMDRQYHH LRPGNVSTKYRSSSDGIAYGEEFAVQFWLGRRPSKEVEYSVYAPPFTTHSISMNQRLL KLRSKNTVRDKGGWMVAVLEAPPSPNVAPPGYYLLTVVNEGIPSLSQWIRFIHA" gene 22851744..22852708 /locus_tag="TCM_014508" /note="dbxref CacaoGD:Thecc1EG014508" mRNA 22851744..22852708 /locus_tag="TCM_014508" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09790.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09790.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g18325t00001" CDS 22851993..22852355 /locus_tag="TCM_014508" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22290.1" /db_xref="Phytozome:POPTR_0015s09790.1" /translation="MASMPKFSYHRLKNEGWFDEVEEEQAILFKKTRKWSRGLRRFGI RKRPKLRIPGLRRFVRKRSRFLSKVKLSWGKALKRLKNGQAHMNDLFGGNFLVLQVNH TPFRSGEKPCRDHGLRGW" gene complement(22853580..22858847) /locus_tag="TCM_014509" /note="dbxref CacaoGD:Thecc1EG014509" mRNA complement(join(22853580..22854519,22855574..22855768, 22855955..22856259,22858731..22858847)) /locus_tag="TCM_014509" /product="Non-LTR retrolelement reverse transcriptase-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018326t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(join(22854170..22854519,22855574..22855768, 22855955..22856259,22858731..22858756)) /locus_tag="TCM_014509" /note="paralog of Thecc1EG018326t1" /codon_start=1 /product="Non-LTR retrolelement reverse transcriptase-like protein" /protein_id="EOY22291.1" /translation="MGVFLLLILKILVNRLRPILTKLIRNTQSSFILGRQASDNIIVV QEAIHTMRIMKRKKGALVIKIDLEKAYDRVKWYFLQEVLIEIGLPSKWMSLIMHIVQT PTFSILWNDGIMLLGTTTQTQGQVMMLVIQKFCSASRQKLSLEKSKMLVSSNVHSSKA KALSHVACISLTKDFVAWLMSRNLGPSSVCSRCNNDIKNLIHALRDCPLSRDTWLAIK PNLTSGDFFGLDLQTWIQSNMTSNVLHDALPWSGIFIHTLWMLWHWRNLSIFETEFQW PANASQKVSLKAKEA" mobile_element 22857440..22864765 /note="source:CACAO_M_E22900_F87_scaffold_3 1 7326" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22864977..22867887) /locus_tag="TCM_014510" /note="dbxref CacaoGD:Thecc1EG014510" mRNA complement(join(22864977..22866829,22867687..22867887)) /locus_tag="TCM_014510" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01170.1.4" /inference="similar to AA sequence:Phytozome:POPTR_0005s01170.1" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete; weak similarity to Zinc ion binding,nucleic acid binding" CDS complement(join(22865168..22866829,22867687..22867806)) /locus_tag="TCM_014510" /note="weak similarity to Zinc ion binding,nucleic acid binding" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22292.1" /db_xref="Phytozome:POPTR_0005s01170.1" /db_xref="TAIR:AT2G01050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4NCH1" /translation="MALATPAPMEKKRTEGSSRKVNTEDVLLWYWLLFSYSCQMPLDH LYTEVDVVGDPSPNSGGGFPLFVDHVGSKKIRSGPKTEDPRSQPVDTLPQNQNVLLGA FPRLSYRHVLFNENQEHDTNGEAFDDEEEEVEVPKSDEEDTDRKIGGPYIQFTREEKL RIWKPWKNTLIVKLLGRNISYTYLCTRVKQMWALLGDFQAVDLENGLYCFRFDNKSDY LQVLTDGPWIIADHYLTVRRWCLGFRSDEASVESVATWVCLPGMPLEYYDREILDKIG DRIGKSVKIDRTTSSQSKGKFARLCVEIDLKKPLIPKIFIGGRWQKIEYEGLKMLCFH CEKFGHSEEGCVMKQQEKKGLSEEQALKLSESHKVVQKDYETAKYGPWMVVKQNNRKP KMQKAKAAIQMEKPQPISNLGSQFVVLDNEDMEQNEDVVILETTKNATIMPEMSRTKK SMTATYTKEQLKENLQSSASVSNRDLTSLSKVKGKKQVPEEPKITFSSGTIKLTRQSN PEMVKNVVQGAPSSPPLQIQHSKIAMYLESGREKNEQSVGVNGAAHEKLTEPMEDDNP ITRGTNDILNSMELESNEVVAMQVSLT" gene 22867980..22872961 /locus_tag="TCM_014511" /note="dbxref CacaoGD:Thecc1EG014511" mRNA join(22867980..22868282,22868538..22868800, 22868916..22869006,22869124..22869172,22869259..22869350, 22869462..22869569,22869677..22869796,22869893..22870303, 22870403..22870544,22870831..22870898,22871020..22871152, 22871736..22872301) /locus_tag="TCM_014511" /product="Hydrolase, hydrolyzing O-glycosyl compounds, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030469t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09800.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1461t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1461t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5018t2" mRNA join(22867980..22868282,22868538..22868800, 22868916..22869006,22869124..22869172,22869259..22869350, 22869462..22869569,22869677..22869796,22869893..22870303, 22870403..22870544,22870831..22870898,22871056..22871152, 22871736..22872301) /locus_tag="TCM_014511" /product="Seed imbibition 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030469t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09800.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1461t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1461t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5018t2" mRNA join(22867982..22868282,22868538..22868800, 22868916..22869006,22869124..22869172,22869259..22869350, 22869462..22869569,22869677..22869796,22869893..22870303, 22870403..22870544,22870831..22870898,22871020..22871154, 22871264..22871481,22871567..22871655,22871734..22872961) /locus_tag="TCM_014511" /product="Hydrolase, hydrolyzing O-glycosyl compounds, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030469t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09800.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5018t2" CDS join(22868104..22868282,22868538..22868800, 22868916..22869006,22869124..22869172,22869259..22869350, 22869462..22869569,22869677..22869796,22869893..22870303, 22870403..22870544,22870831..22870898,22871020..22871154, 22871264..22871481,22871567..22871655,22871734..22872015) /locus_tag="TCM_014511" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030469t1" /codon_start=1 /product="Hydrolase, hydrolyzing O-glycosyl compounds, putative isoform 1" /protein_id="EOY22293.1" /db_xref="Phytozome:POPTR_0015s09800.1" /db_xref="TAIR:AT3G57520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAR3" /translation="MTITATPCVKDGCLLVRGKVLLTKVPKNIIVSQGSRGSAFLGAT SGIPSSRHVFTLGVLEGYKLLCLFRFKIWWMIPRYGESGSEIPMETQMLLLEVREESA VDDGISSDPATENTFYILFLPVLDGEFRTSLQGTSANELQFCVESGDANVQTSQILEP VFINSGDNPFELIKNSIKILEKHKGTFSHIENKKIPAHLDWFGWCTWDAFYTEVNPQG IKEGLQSFSDGGCSPKFLVIDDGWQDTVNEFRKEGEPLIEGTQFATRLVDIKENSKFK SSGSDAGCDGLHEFIDTIKGKYGLKYVYVWHALAGYWGGVLSSSETMKKYNPKIVYPV QSPGIIGNLRDIIPDSLEKYGVGIIDPQKIFDFYNDLHSYLSSSGVDGVKVDAQNLIE TLGSGFGGRVSLTRQYQQALEQSVSRNFRDNNLICCMSHNSDSIYSSKKSVVARASED FMPREPTFQTLHIASVAFNSLLLGEIVVPDWDMFHSKHDTAEFHGAARSIGGCAVYVS DKPENHDFEILRRLVLPDGSILRARHAGRPTRDCLFRDPVMDGKSLLKIWNLNKLSGV IGVFNCQGAGSWPMKQATEDLTSTPSSISGNMSPCDVEFIEEVAGENWNGDCAVYAFN SGSLSKLPKKGNIKVSLATLKCEIYTVSPIRVFGQDVRFAPIGLLDMYNSGGAVEAMD CTMNLSGCIIKIKGRGCGRFGTYSSAKPRSCTVDMKEVEFIYNTENGLLTVDLQGDCN LRTMEFVF" CDS join(22868104..22868282,22868538..22868800, 22868916..22869006,22869124..22869172,22869259..22869350, 22869462..22869569,22869677..22869796,22869893..22870303, 22870403..22870544,22870831..22870898,22871020..22871152, 22871736..22871777) /locus_tag="TCM_014511" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030469t1" /codon_start=1 /product="Hydrolase, hydrolyzing O-glycosyl compounds, putative isoform 2" /protein_id="EOY22294.1" /db_xref="Phytozome:POPTR_0015s09800.1" /db_xref="TAIR:AT3G57520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAR3" /translation="MTITATPCVKDGCLLVRGKVLLTKVPKNIIVSQGSRGSAFLGAT SGIPSSRHVFTLGVLEGYKLLCLFRFKIWWMIPRYGESGSEIPMETQMLLLEVREESA VDDGISSDPATENTFYILFLPVLDGEFRTSLQGTSANELQFCVESGDANVQTSQILEP VFINSGDNPFELIKNSIKILEKHKGTFSHIENKKIPAHLDWFGWCTWDAFYTEVNPQG IKEGLQSFSDGGCSPKFLVIDDGWQDTVNEFRKEGEPLIEGTQFATRLVDIKENSKFK SSGSDAGCDGLHEFIDTIKGKYGLKYVYVWHALAGYWGGVLSSSETMKKYNPKIVYPV QSPGIIGNLRDIIPDSLEKYGVGIIDPQKIFDFYNDLHSYLSSSGVDGVKVDAQNLIE TLGSGFGGRVSLTRQYQQALEQSVSRNFRDNNLICCMSHNSDSIYSSKKSVVARASED FMPREPTFQTLHIASVAFNSLLLGEIVVPDWDMFHSKHDTAEFHGAARSIGGCAVYVS DKPENHDFEILRRLVLPDGSILRARHAGRPTRDCLFRDPVMDGKFWSGCSFCSHRIA" CDS join(22868104..22868282,22868538..22868800, 22868916..22869006,22869124..22869172,22869259..22869350, 22869462..22869569,22869677..22869796,22869893..22870303, 22870403..22870544,22870831..22870898,22871056..22871152, 22871736..22871777) /locus_tag="TCM_014511" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG030469t1" /codon_start=1 /product="Seed imbibition 2 isoform 3" /protein_id="EOY22295.1" /db_xref="Phytozome:POPTR_0015s09800.1" /db_xref="TAIR:AT3G57520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAR3" /translation="MTITATPCVKDGCLLVRGKVLLTKVPKNIIVSQGSRGSAFLGAT SGIPSSRHVFTLGVLEGYKLLCLFRFKIWWMIPRYGESGSEIPMETQMLLLEVREESA VDDGISSDPATENTFYILFLPVLDGEFRTSLQGTSANELQFCVESGDANVQTSQILEP VFINSGDNPFELIKNSIKILEKHKGTFSHIENKKIPAHLDWFGWCTWDAFYTEVNPQG IKEGLQSFSDGGCSPKFLVIDDGWQDTVNEFRKEGEPLIEGTQFATRLVDIKENSKFK SSGSDAGCDGLHEFIDTIKGKYGLKYVYVWHALAGYWGGVLSSSETMKKYNPKIVYPV QSPGIIGNLRDIIPDSLEKYGVGIIDPQKIFDFYNDLHSYLSSSGVDGVKVDAQNLIE TLGSGFGGRVSLTRQYQQALEQSVSRNFRDNNLICCMSHNSDSIYSSKKSVVARASED FMPREPTFQTLHIASVAFNSLLLGEIVVPDWDMFHSKHDTAEFHGAARSIGGCAVYVR RLVLPDGSILRARHAGRPTRDCLFRDPVMDGKFWSGCSFCSHRIA" gene 22872557..22878767 /locus_tag="TCM_014512" /note="dbxref CacaoGD:Thecc1EG014512" mRNA join(22872557..22872683,22873890..22874367, 22874629..22874784,22874889..22874979,22875073..22875121, 22875202..22875292,22875403..22875478,22875568..22875687, 22875768..22876163,22876251..22876392,22876580..22876647, 22876739..22876873,22876984..22877207,22877312..22877400, 22877494..22877757,22877894..22878767) /locus_tag="TCM_014512" /product="Hydrolase, hydrolyzing O-glycosyl compounds, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g36410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014511t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09800.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5955t1" mobile_element complement(22872977..22873246) /note="source:CACAO_on_E33_A_scaffold_3 877 1143" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(22874127..22874367,22874629..22874784, 22874889..22874979,22875073..22875121,22875202..22875292, 22875403..22875478,22875568..22875687,22875768..22876163, 22876251..22876392,22876580..22876647,22876739..22876873, 22876984..22877207,22877312..22877400,22877494..22877637) /locus_tag="TCM_014512" /note="paralog of Thecc1EG014511t1" /codon_start=1 /product="Hydrolase, hydrolyzing O-glycosyl compounds, putative" /protein_id="EOY22296.1" /db_xref="Phytozome:POPTR_0015s09800.1" /db_xref="TAIR:AT3G57520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAR3" /translation="MGSNEEVMVTAEPSVQDGSFMVRGRALFSDVPGKIMVTPVRDSS VFVGATATSSSSRHVFTLGVLQYMSTVLLLFFFAVVKTRMLLLEARKETNIQDTENTF YVLILPVLDGQFRTTLQGTPDNELKFCTESGDPDVQTTKLTEPVFINSGDNPFKLMRD SIKILEKHKGTFRHIENKQLPEHVDWFGWNTWNAFYTNVDPQGIIRDLKSCPPKFLTI DEGWQNLMPSYDEDATKELARLLNFEENEKFKGSSLDKLGNNLRDFIKTIKQKYGLKY VYTWHASVGYWGVVLPESEVMKKYNPKIQAVVQSPGNLTHIICPTLDKIQPVIHPKIL NFYKDYHSYLASCGVNGVKVDVQNVLELPGAGYGGRVSLTRQYLGALEDSVMENFNAN NLICSMSLNSDFIYSAKKVAAARATEDFMPNELTFRTLHVAAAAFNSLLLGEIVVPDW DMFYSDHFTAEFHGAARALSGSAVYVSDKPGSNNFDIIKKLVLPDGSILRARHAGRLT QDCLFNDPVTDGNSLLKIWNLNKLSGVIGVFNCQRAGVWPPVRGSIYYPVPGSGTPIS GCVSALDADSLEEVAGENWRGDCAVYAFFSESLKTMLKDTKFQVALEYLKCEVFTVSP IRVFGEYLRFAPIGLLDMYNSGGALEAMNYENNQSECKIKVNMRGRGRF" gene 22878852..22882074 /locus_tag="TCM_014513" /note="dbxref CacaoGD:Thecc1EG014513" mRNA join(22878852..22879549,22879641..22879742, 22881267..22881548,22881712..22882074) /locus_tag="TCM_014513" /product="31-kDa RNA binding protein" /inference="alignment:exonerate- protein:2:ricco:30147.m013835" /inference="similar to AA sequence:ricco:30147.m013835" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8707t1" CDS join(22879007..22879549,22879641..22879742, 22881267..22881548,22881712..22881774) /locus_tag="TCM_014513" /note="dbxref ricco:30147.m013835" /codon_start=1 /product="31-kDa RNA binding protein" /protein_id="EOY22297.1" /db_xref="TAIR:AT4G24770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q04836" /translation="MSAVTKPISLADSSCLASLASLFSTSSKAPSLLSLPPKSIKLFL SSSRSPSLSALRTKTHFPSLVALVAQTSDWAQQEEENDTTITIDGQEQQVQEETESEE GESTWENEESDGAEANLSDWDPEESEDAVFEGQGGDSEEEDSIQPPEEAKLFVGNLPY DVDSQSLAMLFEKAGTVEIAEVIYNRETEQSRGFGFVTMSSVEEAEKAAELFNRYDLN GRLLTVNKASPRGSRFDRPPRVYEPAFRIYVGNIPWDVDNARLEQVFSEHGKVVEARV VYDRETGRSRGFGFVTMSSETELNDAIAALDGQILEGRAIRVNVAEERPRRGF" gene complement(22882213..22885887) /locus_tag="TCM_014514" /note="dbxref CacaoGD:Thecc1EG014514" mRNA complement(join(22882213..22883069,22883495..22883659, 22884150..22884420,22885543..22885887)) /locus_tag="TCM_014514" /product="L-isoaspartate O-methyltransferase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007595001" /inference="similar to AA sequence:Phytozome:POPTR_0012s09210.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04670t00001" CDS complement(join(22882819..22883069,22883495..22883659, 22884150..22884420,22885543..22885782)) /locus_tag="TCM_014514" /codon_start=1 /product="L-isoaspartate O-methyltransferase" /protein_id="EOY22298.1" /db_xref="Phytozome:POPTR_0012s09210.1" /db_xref="TAIR:AT3G48330.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42539" /translation="MMNLSTVIAYGCRYCTPPIKQLLNYTTLLHLPHHHHLHLHLHLH LQRRSPASIFYSSFNNLKLPNFSLLLTGNSLFFRMERFWSGNGVNKNKQMVEHLQHYG VISSKKVAEVMETVDRAFFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLQ PGMHALDVGSGTGYLTACFAIMVGRQGRAVGVEHIPELVASSIENIKKCAAAPLLKEG SLSVHTGDGRQGWPECAPYDAIHVGAAAPEIPQPLLDQLKPGGRMVIPVGNIFQDLKV VDKNLDGSISIRSETSVRYVPLTSRDAQLRGY" gene 22888804..22896728 /locus_tag="TCM_014515" /note="dbxref CacaoGD:Thecc1EG014515" mRNA join(22888804..22888881,22892659..22893024, 22893152..22893259,22893610..22894058,22894150..22894259, 22894530..22894675,22894763..22895242,22895429..22896728) /locus_tag="TCM_014515" /product="Sieve element occlusion e, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007594001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017020t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007594001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4121t1" CDS join(22892815..22893024,22893152..22893259, 22893610..22894058,22894150..22894259,22894530..22894675, 22894763..22895242,22895429..22896043) /locus_tag="TCM_014515" /note="paralog of Thecc1EG017020t1" /codon_start=1 /product="Sieve element occlusion e, putative" /protein_id="EOY22299.1" /db_xref="Phytozome:GSVIVT01007594001" /db_xref="TAIR:AT3G01680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUS6" /translation="MATPNVHPSKSQQLLRRDRRIFSVSDDNSMMKQIQSTHAPDDRV VDVKPILQIIENVLRHVTPNIDRALNAADQGHIDGFDDRASLAAIDGMLEALAFIVHK ISCEISCKCSGGGDAHSTTMALLNMLSSYSWDAKVVLTLAAFSVNIGEFWLIVQLCTT NSLAKSVALLKQLPDILEHSHNLKPQFDALNNLIKAMMDVTKCIVEFTELPSQYILSD VPPMSIAMAHIPTAAYWTMRSVVACASQIASLVGLKHEHITATSEAWELSSLAHKVSS IHDHLQKLLRQCYQHIDEKKQAEAYEGLAHSFGTPQLDNLKILIKLFSLGKEDPQNAL LGPDKTKVHMDVLRRKHVLLLISDLDISPDEIQVFEVLYKYERVSSELNYEIVWLPIV DMSTWNDGHQQKFLNLQSIMPWYTVHHPSIIEPAVIKYTKEVWRFVKKPIVVTLDPQG KVTCPNALNMLWIWGNTAFPFNTETEESLWKTQAWTIELLVDGLEANLHTWMKQQKVI CLYGGEELDWIESFTSETKKVAQALGIGLEMVYVGKNNARERVRKITGFINEKQLSHA WQDGTIWFFWNRLESMLFSKTRHGKTNETDVIKQEVMTLLGYDGSEHGWAVFFLGSIE MVRAKGDKALSSMQSFETWEYLAREMGFMPALRKYLEGIAEDHHCTRLILPGISGGIA ERVVCAECGRPMEMYFMYRCCVD" gene complement(22898718..22899589) /locus_tag="TCM_014516" /note="dbxref CacaoGD:Thecc1EG014516" mRNA complement(join(22898718..22899164,22899321..22899589)) /locus_tag="TCM_014516" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1806t3" CDS complement(join(22898952..22899164,22899321..22899341)) /locus_tag="TCM_014516" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22300.1" /translation="MHHHLTKKKKCENERKLVAMLLCCQRLPTKRPIEALKATHPIKD LNRVCLGNIVAHLLRKLNRADEIADGDAGGHGR" gene 22900089..22904073 /locus_tag="TCM_014517" /note="dbxref CacaoGD:Thecc1EG014517" mRNA join(22900089..22900306,22901195..22904073) /locus_tag="TCM_014517" /product="Leucine-rich repeat protein kinase family protein" /inference="alignment:exonerate- protein:2:ricco:30147.m013832" /inference="similar to AA sequence:ricco:30147.m013832" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5069t1" CDS 22901520..22903433 /locus_tag="TCM_014517" /note="dbxref ricco:30147.m013832" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY22301.1" /db_xref="TAIR:AT2G31880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SKB2" /translation="MAFSPCKPHHHLLPLFTLLSLFFISSARLTLDRSDLKALSTIVK DLGIDGQRFPATSPCSAAGVFCERRLTDNNTYVLKVTRLVFKSQGLDGFLSPALGKLS ELKELSVSHNNIFDQVPSEIVDCKKLEILDLQNNQFSGEIPSNLSSLIRLRVLDLSSN RFTGNLSFLKYFPNMESLSLANNLFSGKIPPSIRSFRNLRFFDFSGNSFLEGSAPLMS KVDESALSRYPKRYIFAERNSTNKNKSSAAAPSPSGGKSATAAGPSSSTSTPHKHKNK KRKVMGWILGFLAGAVAGTISGFIFSVMFKLVLAAIRGGGRDTGPSIFSPLIKKAEDL AFLEKEDGLASLEIIGKGGCGEVYKAELPGSGGKMIAIKKIIQPPKDAAELTDEDSKL LNKKMRQIRSEITTVGQIRHRNLLPLLAHVSRPDCHYLVYEFMKNGSLQDILHQVSLG ARELDWPARQRIAIGVAAGLEYLHTHHSPRIIHRDLKPGNILLDDDMEARIADFGLAK AMPDANTHVTTSNLAGTVGYIAPEYHQTLKFTDRCDIYSFGVILGVLVMGKLPSDEFF QHTDEMSLVKWMRNIMTSDNPSQAIDPKLLGQGHEEQMLLVLKIAYFCTLDDPKERPS SKDVRCMLSQIKN" gene complement(22904359..>22905953) /locus_tag="TCM_014518" /note="dbxref CacaoGD:Thecc1EG014518" mRNA complement(join(22904359..22904381,22904775..22904845, 22905101..22905205,22905326..22905379,22905452..22905491, 22905574..22905620,22905710..22905758,22905863..22905953)) /locus_tag="TCM_014518" /product="Centromere protein X isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s09240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007592001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1879t6_C1" mRNA complement(join(22905100..22905205,22905452..22905491, 22905574..22905620,22905710..22905758, 22905863..>22905953)) /locus_tag="TCM_014518" /product="Centromere protein X isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s09240.1" /inference="similar to AA sequence:TAIR:AT1G78790.2" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc74t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1879t6_C1" mRNA complement(join(22905100..22905205,22905326..22905370, 22905452..22905491,22905574..22905620,22905710..22905758, 22905863..>22905953)) /locus_tag="TCM_014518" /product="Centromere protein X isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s09240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007592001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc74t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1879t6_C1" mRNA complement(join(22905100..22905205,22905326..22905491, 22905574..22905620,22905710..22905758,22905863..22905953)) /locus_tag="TCM_014518" /product="Centromere protein X isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s09240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007592001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc74t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1879t6_C1" CDS complement(join(22905102..22905205,22905452..22905491, 22905574..22905620,22905710..22905758, 22905863..>22905952)) /locus_tag="TCM_014518" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Centromere protein X isoform 4" /protein_id="EOY22305.1" /db_xref="TAIR:AT1G78790.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IBV2" /translation="QFKYREEAKRQFEIRITSAMADNNTPTLDPDLIGAIFKHIWARK AHERERNGIQNTDALDSEVGAGTSKKNRPTSKAVQRAATIAEAEGGTEIEATHVERIL PQLLLDF" CDS complement(join(22905102..22905205,22905326..22905370, 22905452..22905491,22905574..22905620,22905710..22905758, 22905863..>22905952)) /locus_tag="TCM_014518" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Centromere protein X isoform 2" /protein_id="EOY22303.1" /db_xref="Phytozome:GSVIVT01007592001" /db_xref="TAIR:AT1G78790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAQ7" /translation="QFKYREEAKRQFEIRITSAMADNNTPTLDPDLIGAIFKHIWARK AHERERNGIQNTDALDSEVGAGTSKKNRPTSNSLKLSSELLRIFITEAVQRAATIAEA EGGTEIEATHVERILPQLLLDF" CDS complement(join(22905102..22905205,22905326..22905379, 22905452..22905491,22905574..22905620,22905710..22905758, 22905863..22905895)) /locus_tag="TCM_014518" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Centromere protein X isoform 1" /protein_id="EOY22302.1" /db_xref="Phytozome:GSVIVT01007592001" /db_xref="TAIR:AT1G78790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAQ7" /translation="MADNNTPTLDPDLIGAIFKHIWARKAHERERNGIQNTDALDSEV GAGTSKKNRPTSTNADSLKLSSELLRIFITEAVQRAATIAEAEGGTEIEATHVERILP QLLLDF" CDS complement(join(22905102..22905205,22905326..22905491, 22905574..22905620,22905710..22905758,22905863..22905895)) /locus_tag="TCM_014518" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Centromere protein X isoform 3" /protein_id="EOY22304.1" /db_xref="Phytozome:GSVIVT01007592001" /db_xref="TAIR:AT1G78790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAQ7" /translation="MADNNTPTLDPDLIGAIFKHIWARKAHERERNGIQNTDALDSEV GAGTSKKNRPTSSNFSSHFFPWMNFINFTLLLYLIAANADSLKLSSELLRIFITEAVQ RAATIAEAEGGTEIEATHVERILPQLLLDF" mobile_element 22906293..22906552 /note="source:scaffold_8_CACTA_0858 14454 14727" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22907833..22908689 /note="source:scaffold_6_CACTA_0702 13708 14548" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22911345..22912201 /note="source:scaffold_6_CACTA_0702 13708 14548" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22913012..22915962) /note="source:CACAO_M_S_E144631_F7_scaffold_10 47 2997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22915969..22916604) /note="source:CACAO_M_E58843_F33_scaffold_9 2246 2882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22916705..22917053) /note="source:CACAO_M_E44762_F33_scaffold_6 1915 2264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22917717..22919398) /note="source:CACAO_M_E33422_F33_scaffold_4 1 1682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22919391..22919443) /note="source:CACAO_M_E1636_F33_scaffold_1 1 53" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22919399..22919450 /note="source:CACAO_M_S_E4490_F7_scaffold_1 3083 3126" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22924347..22932754 /locus_tag="TCM_014520" /note="dbxref CacaoGD:Thecc1EG014520" mRNA join(22924347..22924511,22927299..22927765, 22931725..22932754) /locus_tag="TCM_014520" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage" mobile_element 22926573..22926676 /note="source:CACAO_M_S_E14847_F12_scaffold_2 3648 3760" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(22927535..22927765,22931725..22932132) /locus_tag="TCM_014520" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22306.1" /translation="MDVMVAKLKALEENDTWSIVLLPINYRTIGCKWVYKTKLNAGGN VKRYKARMVAKVYSQVASFDYQETFSLVAKQSTNKSSQRIVVSLQNPQQQQLPKLSPS LIPEQTHHYSLTKPEFLNYSNLFLNTKSSENCKSAEPLKFCPNFPFGYILNPINSVWF DPLEAVDVEEGAAETEDDDAGKVWADSVKKKRKKKMNKHKYKKLRKRLRRKT" mobile_element 22936641..22936736 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3173 3262" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22936875..22938684) /locus_tag="TCM_014521" /note="dbxref CacaoGD:Thecc1EG014521" mRNA complement(22936875..22938684) /locus_tag="TCM_014521" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30147.m013830" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010648t1" /inference="similar to AA sequence:ricco:30147.m013830" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2125t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2386t1" CDS complement(22937141..22938265) /locus_tag="TCM_014521" /note="dbxref ricco:30147.m013830; paralog of Thecc1EG010648t1" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY22307.1" /db_xref="TAIR:AT1G24530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FYL1" /translation="MSSQLHVFPLQTLKHRCLAALKTRSPHISCLAVRDNLLYAAAIN EINVFDLSNHSPVDSFNDDPTSGFVKSIAFNKTKIFTAHQDGKIRIWEITLSKKHQLL TTLPTVKDRFLHFILPKNYVNVRRHKKRLWIEHWDTVSGLVILNQKELMYSVSWDKSF KIWNVNNRRCLESVKAHEDAVNTLVVSDNGTVYTGSADGLISVWERANKERRHSLVAT LDKHKSTVNALALNADGSVLFSGGCDRSIMVWEKKGENNAENDHVGFVEALWGHSGPI LCLINVGDLFVSGSSDRTVRVWQRGKEGGFHCSIVLEGHEKPVKSLVAVARGVFEGVF TFCSGSLDREIRVWEISRCSNLKNKSHEIRILLDGVPKSC" gene 22940803..22941989 /locus_tag="TCM_014522" /note="dbxref CacaoGD:Thecc1EG014522" mRNA 22940803..22941989 /locus_tag="TCM_014522" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03820.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03820.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5057t1" CDS 22940883..22941746 /locus_tag="TCM_014522" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22308.1" /db_xref="Phytozome:POPTR_0001s03820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLA9" /translation="MKDLSLFLLKNSVGAKMKKGIRNFCNDDGSTSTLNQHQTDHSAT ASSDLVTPPSVVASNANSTARSPPTTLEEMILRLELEEEIARKAKLNEYSDSRAGRMS CANNSDILRSARNALNQYPRFSLDGKDAMYRSSFRNSEIVGTGGRKSVCCDHGLRERY CKIGFESRLEKSLCLPSTLGGESVIWCKPGVVAKLMGLESMPVPISGRSSSCKDGKQQ LSSLIKRQNLRRRAERHEMERRLAMDMSNYDDFRRASVGSCSGAGYCVMKPVVVEPAN GDGGWPTRRFL" mobile_element 22945177..22947047 /note="source:scaffold_9_CACTA_0946 1 1866" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22948912..22949337) /note="source:CACAO_Again_on_S_E25_scaffold_1 3315 3786" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22949331..22949556) /note="source:CACAO_Again_on_S_E25_scaffold_1 127 352" /mobile_element_type="transposon:TIR/hAT" gene 22951489..22956189 /locus_tag="TCM_014523" /note="dbxref CacaoGD:Thecc1EG014523" mRNA join(22951489..22952092,22953172..22953208, 22953303..22953539,22953649..22953696,22955041..22956053) /locus_tag="TCM_014523" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G66900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017022t1" /inference="similar to AA sequence:ricco:30147.m013829" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06520t00001" CDS join(22951791..22952092,22953172..22953208, 22953303..22953539,22953649..22953696,22955041..22955613) /locus_tag="TCM_014523" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013829; paralog of Thecc1EG017022t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY22309.1" /db_xref="TAIR:AT4G24760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LI62" /translation="MGGVTSSMAAKFAFFPPNPPSYKLIKDKATGLLLLAPFPHRENV DVLRLPTRRGTEIVAVYVRYPMATSTLLYSHGNAADVGQMYELFIELSIHLRVNLMGY DYSGYGQSSGKPSEQNTYADIEAAYKCLEESYGAKQENIILYGQSVGSGPTVDLAARL PRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKISLVKCPVLIIHGTNDDVVDCS HGKQLWELCQEKYEPLWVKGGNHCDLELYPDYIRHLKKFISTVEKSPSQRNGSRRSTD GIDQSRHSTDYFEAPRRSIDHREKPRKSTDSRDKPRKSTDSRDKSRKSTGRPEKLKVH EYNKFNNIHKLEKLRISLDQMDRMERMERSRRSVEYHDKSRRSIDHQLEKARKSVDWL DRIEAV" mRNA join(22951844..22952092,22953172..22953208, 22953303..22953539,22955041..22956189) /locus_tag="TCM_014523" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G66900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017022t1" /inference="similar to AA sequence:ricco:30147.m013829" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1728t8; inference alignment:Newbler:10:TSA:cgbaL_g06520t00001" CDS join(22951986..22952092,22953172..22953208, 22953303..22953539,22955041..22955613) /locus_tag="TCM_014523" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013829; paralog of Thecc1EG017022t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY22310.1" /db_xref="TAIR:AT4G24760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LI62" /translation="MATSTLLYSHGNAADVGQMYELFIELSIHLRVNLMGYDYSGYGQ SSGKPSEQNTYADIEAAYKCLEESYGAKQENIILYGQSVGSGPTVDLAARLPRLRAVV LHSPILSGLRVMYPVKRTYWFDIYKGTNDDVVDCSHGKQLWELCQEKYEPLWVKGGNH CDLELYPDYIRHLKKFISTVEKSPSQRNGSRRSTDGIDQSRHSTDYFEAPRRSIDHRE KPRKSTDSRDKPRKSTDSRDKSRKSTGRPEKLKVHEYNKFNNIHKLEKLRISLDQMDR MERMERSRRSVEYHDKSRRSIDHQLEKARKSVDWLDRIEAV" mobile_element 22957409..22959622 /note="source:scaffold_4_CACTA_0502 2146 4378" /mobile_element_type="transposon:TIR/CACTA" gene 22959864..22967024 /locus_tag="TCM_014525" /note="dbxref CacaoGD:Thecc1EG014525" mRNA join(22959864..22960119,22961488..22961743, 22963837..22963847,22963946..22964059,22964215..22964341, 22964558..22964739,22964843..22965038,22965824..22967024) /locus_tag="TCM_014525" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09870.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09870.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02986t00001" mobile_element 22961781..22961839 /note="source:INTACT415F_F22_scaffold_4-int 2186 2243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22961795..22961866) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3213 3283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22962119..22962495) /note="source:scaffold_5_CACTA_0607 7043 7409" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22962476..22962682) /note="source:CACAO_on_S_E58_scaffold_2 1 207" /mobile_element_type="transposon:TIR/Mutator" CDS join(22963837..22963847,22963946..22964059, 22964215..22964341,22964558..22964739,22964843..22965038, 22965824..22966846) /locus_tag="TCM_014525" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY22311.1" /db_xref="Phytozome:POPTR_0015s09870.1" /db_xref="TAIR:AT5G50230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF20" /translation="MVEVTLSLIPSFLSQSVAQPIPIPLFPFQHTNFSSIQANIIMSQ EEVAREAIKHALKALKKRHLVEEGAHAPAYIALSRPIISQGSEWKEKAENLELELQQC YKAQSRLSEQLVVEVAESRALKASLQEKETTIADLENEFTQTRDECSQLKTDLEENIR ALELVMSERQELKAQLEQLTIKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDM IERLKASGLEKLAQEQVDGIVRRSEEGAEFFAESTIASVCKHRINAHEGGCASIMFEY NSGKLISGGQDRSIKMWDTSTGSLSHSLFGCLGSVLDLAITHDNRFIIAASSSNNLFV WDVNSGRVRHTLTGHTDKVCAVDVSKVSSRHVVSAAYDRTIKVWDLQKGYCTTTIIFH SNCNALCFSTDGQIICSGHVDGNLRLWDIQTGKLLSEVAAHSLAITSISLSRNGNVIL TSGRDNLHNLFDIRSLEVCGTFRANGNRVASNWSRSCMSPDDNHIAAGSADGSIYIWS ISKADIVSTLKEHTAPVLCCTWSGLGKPLASADKNGIVCTWT" mobile_element 22967897..22968092 /note="source:scaffold_5_CACTA_0610 5122 5297" /mobile_element_type="transposon:TIR/CACTA" gene 22968540..22969446 /locus_tag="TCM_014526" /note="dbxref CacaoGD:Thecc1EG014526" mRNA join(22968540..22968950,22969030..22969446) /locus_tag="TCM_014526" /product="Peptide methionine sulfoxide reductase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s09290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047009t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s09290.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00683t00003" CDS join(22968621..22968950,22969030..22969284) /locus_tag="TCM_014526" /note="paralog of Thecc1EG047009t1" /codon_start=1 /product="Peptide methionine sulfoxide reductase" /protein_id="EOY22312.1" /db_xref="Phytozome:POPTR_0012s09290.1" /db_xref="TAIR:AT4G25130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P54153" /translation="MATAADSNNNNPALDPDLDRPDNSAHEFAQFGAGCFWGVQLAYQ RVQGVVKTEVGYSQGHVPDPNYNLVRTGTTNHVEVVRIQFDPQDCPYNDLLSVFWGRH DPTTLNRQGEDVGAQYRSGIYYYNENQARLARESLEAKQLELKDKKIVTEILPAKRFY RAEEYHQRYLEKGGGSGSKQSAEKGCTDPIRCYG" gene complement(22969522..22971895) /locus_tag="TCM_014527" /note="dbxref CacaoGD:Thecc1EG014527" mRNA complement(join(22969522..22969896,22970361..22970501, 22970611..22970846,22971046..22971895)) /locus_tag="TCM_014527" /product="Cysteine proteinases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013826" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010654t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09890.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03899t00001" CDS complement(join(22969633..22969896,22970361..22970501, 22970611..22970846,22971046..22971493)) /locus_tag="TCM_014527" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010654t1" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 1" /protein_id="EOY22313.1" /db_xref="Phytozome:POPTR_0015s09890.1" /db_xref="TAIR:AT5G50260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGR9" /translation="MRRIDMVLVVLSLALVLGIAESFDFHETDLASEESLWDLYERWR SHHTVSRSLDEKHKRFNVFKQNVMHVHNTNNKDKPYKLKLNKFADMTNHEFRNAYAGS KIKHHRMFQGTPRGTGSFMYENVDRVPPFVDWRKKGAVTAVKDQGQCGSCWAFSTVVA VEGINQIKTNKLVSLSEQELVDCDTEENQGCNGGLMDIAFDFIQKKGGITTETNYPYE AEDGTCDVSKENSPAVSIDGHENVPANNEDALLKAVAHQPVSVAIDAGGMDFQFYSEG VFTGQCGTELNHGVAAVGYGTTLDGTKYWIVKNSWGPEWGEKGFIRIERGIKDKKGLC GIAMESSYPIKNSSSNPTEPSFYPKDEL" mRNA complement(join(<22969783..22969896,22970361..22970501, 22970611..22970846,22971046..22971890)) /locus_tag="TCM_014527" /product="Cysteine proteinases superfamily protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010654t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09890.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc195t6" CDS complement(join(<22969783..22969896,22970361..22970501, 22970611..22970846,22971046..22971493)) /locus_tag="TCM_014527" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010654t1" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 2" /protein_id="EOY22314.1" /db_xref="Phytozome:POPTR_0015s09890.1" /db_xref="TAIR:AT5G50260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGR9" /translation="MRRIDMVLVVLSLALVLGIAESFDFHETDLASEESLWDLYERWR SHHTVSRSLDEKHKRFNVFKQNVMHVHNTNNKDKPYKLKLNKFADMTNHEFRNAYAGS KIKHHRMFQGTPRGTGSFMYENVDRVPPFVDWRKKGAVTAVKDQGQCGSCWAFSTVVA VEGINQIKTNKLVSLSEQELVDCDTEENQGCNGGLMDIAFDFIQKKGGITTETNYPYE AEDGTCDVSKENSPAVSIDGHENVPANNEDALLKAVAHQPVSVAIDAGGMDFQFYSEG VFTGQCGTELNHGVAAVGYGTTLDGTKYWIVKNSWGP" gene 22974019..22977568 /locus_tag="TCM_014528" /note="dbxref CacaoGD:Thecc1EG014528" mRNA join(22974019..22974096,22974472..22974782, 22975104..22975366,22977235..22977568) /locus_tag="TCM_014528" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400016783" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(22974086..22974096,22974472..22974782, 22975104..22975366,22977235..22977447) /locus_tag="TCM_014528" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22315.1" /translation="MLISPLMRESKSGDWISQLPNDIFIFILSSVTVKEAVATSLPSK RWRYLWAYISRLDFVLLIVCETYCISHLRFCDVAEEKFIHWVNSVVKMHQGLTLDEFR IDFPYLHGSPHLVNLKYSGPSLKLKYLSSPAIDAGLKCIEICNINIVSFKYFGRKLIL QLKNLPRLVELYVSPGYRRRLSYAFAQVSCIFSQLLSWVKPKMRRQVVETVERPHQHP KVVELAGCYGRTTDVELAIYFIQNAVALKKMIINPRNQEMDSEKEIS" mobile_element complement(22979176..22982400) /note="source:CACAO_M_E53114_F328_scaffold_8 1 3204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22982843..22984412) /note="source:CACAO_M_E69946_F329_scaffold_9 3880 5445" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22984403..22988053) /note="source:CACAO_M_E69946_F329_scaffold_9 1 3652" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22988054..22988810) /note="source:CACAO_M_E69946_F329_scaffold_9 4597 5350" /mobile_element_type="retrotransposon:LTR/Copia" gene 22995310..22997642 /locus_tag="TCM_014530" /note="dbxref CacaoGD:Thecc1EG014530" mRNA join(22995310..22995611,22995908..22996509, 22996722..22996860,22996964..22997585) /locus_tag="TCM_014530" /product="Pectin lyase-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010673t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09930.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc162t2; inference alignment:Newbler:10:TSA:cgbaP1_g03258t00001" mRNA join(22995397..22995649,22995769..22997642) /locus_tag="TCM_014530" /product="Pectate lyase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010673t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09930.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:PASA:2:TSA:puevd3b014039t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g03258t00001" mRNA join(22995397..22995649,22995769..22996509, 22996722..22996860,22996964..22997642) /locus_tag="TCM_014530" /product="Pectin lyase-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017037t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09930.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03258t00001" CDS join(22995537..22995649,22995769..22996509, 22996722..22996860,22996964..22997185) /locus_tag="TCM_014530" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017037t1" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 1" /protein_id="EOY22316.1" /db_xref="Phytozome:POPTR_0015s09930.1" /db_xref="TAIR:AT4G24780.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O24554" /translation="MAIPSLSLLFLLTSLLIPTLISSSPVQDPEAVMQDVHRAINASR RNLGYLSCGTGNPIDDCWRCDPNWETNRQRLADCAIGFGKNAVGGRDGKIYVVTDSGN DDPVNPKPGTLRHAVIQDEPLWIIFARDMTIQLKEELIMNSFKTIDGRGASVHIAGGP CITIQFVTNIIIHGLNIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGSSHVWVDH NSLSNCKDGLVDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFG EGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFTAPEDRFSKEVTK HEDAPESEWKGWNWRSEGDLMVNGAFFTPSGAGASSSYAKASSLGARPSSLVATITTN AGALNCKKGSRC" CDS join(22995537..22995611,22995908..22996509, 22996722..22996860,22996964..22997185) /locus_tag="TCM_014530" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010673t1" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 2" /protein_id="EOY22317.1" /db_xref="Phytozome:POPTR_0015s09930.1" /db_xref="TAIR:AT4G24780.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O24554" /translation="MAIPSLSLLFLLTSLLIPTLISSSPNAVGGRDGKIYVVTDSGND DPVNPKPGTLRHAVIQDEPLWIIFARDMTIQLKEELIMNSFKTIDGRGASVHIAGGPC ITIQFVTNIIIHGLNIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGSSHVWVDHN SLSNCKDGLVDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGE GLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFTAPEDRFSKEVTKH EDAPESEWKGWNWRSEGDLMVNGAFFTPSGAGASSSYAKASSLGARPSSLVATITTNA GALNCKKGSRC" CDS join(22995537..22995649,22995769..22996513) /locus_tag="TCM_014530" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG010673t1" /codon_start=1 /product="Pectate lyase family protein isoform 3" /protein_id="EOY22318.1" /db_xref="Phytozome:POPTR_0015s09930.1" /db_xref="TAIR:AT1G67750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O24554" /translation="MAIPSLSLLFLLTSLLIPTLISSSPVQDPEAVMQDVHRAINASR RNLGYLSCGTGNPIDDCWRCDPNWETNRQRLADCAIGFGKNAVGGRDGKIYVVTDSGN DDPVNPKPGTLRHAVIQDEPLWIIFARDMTIQLKEELIMNSFKTIDGRGASVHIAGGP CITIQFVTNIIIHGLNIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGSSHVWVDH NSLSNCKDGLVDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFG EGLVQRMPR" gene 22997598..23008874 /locus_tag="TCM_014531" /note="dbxref CacaoGD:Thecc1EG014531" mRNA join(22997598..22997737,23005303..23005498, 23005588..23005721,23006143..23006446,23006570..23006889, 23008132..23008688) /locus_tag="TCM_014531" /product="BTB and TAZ domain protein 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013825" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019806t1" /inference="similar to AA sequence:ricco:30147.m013825" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02581t00001" gene 22998039..22999608 /locus_tag="TCM_014532" /note="dbxref CacaoGD:Thecc1EG014532" mRNA join(22998039..22998750,22999101..22999608) /locus_tag="TCM_014532" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.85 coverage" CDS join(22998560..22998750,22999101..22999254) /locus_tag="TCM_014532" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22322.1" /translation="MDWNALSLLPSPQAAPCMPLGLLLVAVQSTKENYERRPRSFFVL NIDNMLHIDRSFLTKTRTIRCYGPDHVGDNYCVGSLSLTGRRLRRIKDDDFELWTINM LPLASGKKMVDL" mRNA join(23005252..23005498,23005588..23005721, 23006143..23006438,23006606..23006609,23006626..23006889, 23008132..23008874) /locus_tag="TCM_014531" /product="BTB and TAZ domain protein 2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m013825" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000785t1" /inference="similar to AA sequence:ricco:30147.m013825" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc65t4; inference alignment:Newbler:10:TSA:cgbaP2_g02581t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc107t5_C1" CDS join(23005373..23005498,23005588..23005721, 23006143..23006446,23006570..23006889,23008132..23008312) /locus_tag="TCM_014531" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013825; paralog of Thecc1EG019806t1" /codon_start=1 /product="BTB and TAZ domain protein 2 isoform 1" /protein_id="EOY22319.1" /db_xref="TAIR:AT3G48360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3J5" /translation="MEDKNNHNTTSSVISSAPELPEPDVQILTSGGLRIAAHSSILAM VSPVLENIMDRPRKHRTSERVIPILGVPCDAVSAFVGYLYSARCTEEQMEKYGIHLLA LSHVYSVTQLKQRCARAVSQRLTIENVVDVLQLARLCDAPDLYLKCMKLVAAHFKSVE QTEGWKFMQDHDPWLELEILQFIDEAESRKKRTRRHRVEQSLYLQLSEAMECLEHICT EGCTTVGPYDVEPAKKRGPCNKYTTCQGVQLLIKHFASCKRRANGGGCSRCKRMWQLL RLHSSICDQPDSCRVPLCRQFKLKAQQQRMGDDALWKLLVRKVLSAKTISSLSLPKRK REEELRETMGGHALRTFRFC" CDS join(23005373..23005498,23005588..23005721, 23006143..23006438,23006606..23006609,23006626..23006889, 23008132..23008312) /locus_tag="TCM_014531" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013825; paralog of Thecc1EG000785t1" /codon_start=1 /product="BTB and TAZ domain protein 2 isoform 2" /protein_id="EOY22320.1" /db_xref="TAIR:AT3G48360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3J5" /translation="MEDKNNHNTTSSVISSAPELPEPDVQILTSGGLRIAAHSSILAM VSPVLENIMDRPRKHRTSERVIPILGVPCDAVSAFVGYLYSARCTEEQMEKYGIHLLA LSHVYSVTQLKQRCARAVSQRLTIENVVDVLQLARLCDAPDLYLKCMKLVAAHFKSVE QTEGWKFMQDHDPWLELEILQFIDEELEAMECLEHICTEGCTTVGPYDVEPAKKRGPC NKYTTCQGVQLLIKHFASCKRRANGGGCSRCKRMWQLLRLHSSICDQPDSCRVPLCRQ FKLKAQQQRMGDDALWKLLVRKVLSAKTISSLSLPKRKREEELRETMGGHALRTFRFC " mRNA join(<23005696..23005725,23006216..23006446, 23006570..23006889,23008132..23008874) /locus_tag="TCM_014531" /product="BTB and TAZ domain protein 2 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m013825" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019806t1" /inference="similar to AA sequence:ricco:30147.m013825" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial5; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc65t6; inference alignment:Newbler:10:TSA:cgbaP2_g02581t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc107t5_C1" CDS join(<23005696..23005725,23006216..23006446, 23006570..23006889,23008132..23008312) /locus_tag="TCM_014531" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m013825; paralog of Thecc1EG019806t1" /codon_start=1 /product="BTB and TAZ domain protein 2 isoform 3" /protein_id="EOY22321.1" /db_xref="TAIR:AT3G48360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3J5" /translation="FVGYLYSARLLKQRCARAVSQRLTIENVVDVLQLARLCDAPDLY LKCMKLVAAHFKSVEQTEGWKFMQDHDPWLELEILQFIDEAESRKKRTRRHRVEQSLY LQLSEAMECLEHICTEGCTTVGPYDVEPAKKRGPCNKYTTCQGVQLLIKHFASCKRRA NGGGCSRCKRMWQLLRLHSSICDQPDSCRVPLCRQFKLKAQQQRMGDDALWKLLVRKV LSAKTISSLSLPKRKREEELRETMGGHALRTFRFC" gene 23008884..23011612 /locus_tag="TCM_014533" /note="dbxref CacaoGD:Thecc1EG014533" mRNA join(23008884..23009354,23010480..23010613, 23011223..23011612) /locus_tag="TCM_014533" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS join(23009309..23009354,23010480..23010613, 23011223..23011384) /locus_tag="TCM_014533" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22323.1" /translation="MLLLTSQSKKSMIIKDLKPRKSTSCPDTHSYQAEKQPEIRRDVQ FEMKHILQWKYSILVHFDPDEWNQSRNRVGAAVKASGGLRAQATAGRTQPLASRLLTN FTRCPINRLRR" gene complement(23011389..23012639) /locus_tag="TCM_014534" /note="dbxref CacaoGD:Thecc1EG014534" mRNA complement(23011389..23012639) /locus_tag="TCM_014534" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(23011933..23012211) /locus_tag="TCM_014534" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22324.1" /translation="MQQRQLQQGVDDGYCGPQLVIPSIRQSCNAVRFRSLNVSAKICW GVPCLYFVFKTSLEIATCLHLFRRKRLLILSCGQNLIQENISIILLQV" gene 23013391..23020841 /locus_tag="TCM_014535" /note="dbxref CacaoGD:Thecc1EG014535" mRNA join(23013391..23013957,23014610..23016360, 23016454..23016673,23017335..23017520,23017671..23017889, 23018601..23019208,23019444..23019501,23020041..23020372) /locus_tag="TCM_014535" /product="AAA-type ATPase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m013823" /inference="similar to AA sequence:Phytozome:POPTR_0012s09330.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc829t4; alternateUTRof:Thecc1EG014535t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5091t4; inference alignment:Newbler:10:TSA:cgbaL_g02059t00002" mRNA join(23013391..23013957,23014610..23016360, 23016454..23016673,23017335..23017520,23017671..23017889, 23018601..23018981,23019446..23019501,23020041..23020372) /locus_tag="TCM_014535" /product="AAA-type ATPase family protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:30147.m013823" /inference="similar to AA sequence:Phytozome:POPTR_0012s09330.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc829t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5091t4; inference alignment:Newbler:10:TSA:cgbaL_g02059t00002" mRNA join(23013391..23013957,23014610..23016360, 23016454..23016673,23017335..23017520,23017671..23017889, 23018601..>23019324) /locus_tag="TCM_014535" /product="AAA-type ATPase family protein isoform 11" /inference="alignment:exonerate- protein:2:ricco:30147.m013823" /inference="similar to AA sequence:Phytozome:POPTR_0012s09330.1" /note="transcript variant 11; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc829t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5091t4; inference alignment:Newbler:10:TSA:cgbaL_g02059t00002" mRNA join(23013391..23013957,23014610..23016360, 23016454..23016673,23017335..23017520,23017671..23017889, 23018601..23018859,23018956..>23019324) /locus_tag="TCM_014535" /product="AAA-type ATPase family protein isoform 9" /inference="alignment:exonerate- protein:2:ricco:30147.m013823" /inference="similar to AA sequence:Phytozome:POPTR_0012s09330.1" /note="transcript variant 9; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc829t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5091t4; inference alignment:Newbler:10:TSA:cgbaL_g02059t00002" mRNA join(23013391..23013957,23014610..23016360, 23016454..23016673,23017335..23017520,23017671..23017889, 23018601..23018859,23018961..23018986) /locus_tag="TCM_014535" /product="AAA-type ATPase family protein isoform 10" /inference="alignment:exonerate- protein:2:ricco:30147.m013823" /inference="similar to AA sequence:Phytozome:POPTR_0012s09330.1" /note="transcript variant 12; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc829t2; alternateUTRof:Thecc1EG014535t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5091t4; inference alignment:Newbler:10:TSA:cgbaL_g02059t00002" mRNA join(23013491..23013774,23014087..23014182, 23014268..23016360,23016454..23016673,23017335..23017520, 23017671..23017889,23018601..23019501,23020041..23020841) /locus_tag="TCM_014535" /product="AAA-type ATPase family protein isoform 7" /inference="alignment:exonerate- protein:2:ricco:30147.m013823" /inference="similar to AA sequence:Phytozome:POPTR_0012s09330.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b014044t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5091t4" mRNA join(23013491..23013774,23014087..23014182, 23014268..23016360,23016454..23016673,23017335..23017520, 23017671..23017889,23018601..23019324,23019444..23019501, 23020041..23020841) /locus_tag="TCM_014535" /product="AAA-type ATPase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013823" /inference="similar to AA sequence:ricco:30147.m013823" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5091t4" mRNA join(23013491..23013774,23014087..23014182, 23014268..23016360,23016454..23016673,23017335..23017520, 23017671..23017889,23018601..23019208,23019444..23019501, 23020041..23020841) /locus_tag="TCM_014535" /product="AAA-type ATPase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m013823" /inference="similar to AA sequence:Phytozome:POPTR_0012s09330.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b014044t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5091t4" mRNA join(23013851..23014182,23014610..23016360, 23016454..23016673,23017335..23017520,23017671..23017889, 23018601..23019324,23019444..23020068) /locus_tag="TCM_014535" /product="AAA-type ATPase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m013823" /inference="similar to AA sequence:ricco:30147.m013823" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc969t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5091t4; inference alignment:Newbler:10:TSA:cgbaL_g02059t00002" mRNA join(23013851..23014182,23014610..23016360, 23016454..23016673,23017335..23017520,23017671..23017889, 23018601..23018859,23018961..23018990) /locus_tag="TCM_014535" /product="AAA-type ATPase family protein isoform 10" /inference="alignment:exonerate- protein:2:ricco:30147.m013823" /inference="similar to AA sequence:Phytozome:POPTR_0012s09330.1" /note="transcript variant 10; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc814t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5091t4; inference alignment:Newbler:10:TSA:cgbaL_g02059t00002" CDS join(23014720..23016360,23016454..23016673, 23017335..23017520,23017671..23017889,23018601..23019324, 23019444..23019501,23020041..23020115) /locus_tag="TCM_014535" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013823" /codon_start=1 /product="AAA-type ATPase family protein isoform 1" /protein_id="EOY22325.1" /translation="MDGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSSLFDNVK WETNSSNGISLQLVNGCPEAGLEHNEIRGPEYLGFDERREEQGHEFRLHSVPETFSSR LITCENVEQVGKTGSPVRAKQVGELDDCNGDFKDYGLHEEEVHRKGQLSERSHSSFKD KGMNLTCMTATINSVEDVDSCNEPIVGSSPMERVNHRASKQKLQSRNQVKLYGANGDV ASRAGSPCPSLDVVSNRSRQLYGDEDVDVVDCIHRGCGISYCWSKTPRLRESNPSSDF EDLPLLSGDTSETTLCGQSFWKCINGEINPHSDTPRSLSQKFRPKSFDELVGQSVVVR SLLSAISKGRITSFYLFHGPRGTGKTSASKIFAAALNCLSLEEFKPCGRCRECILFYS GRSRDVKEVDSLRINRLDRLRSLVKNAVVPPVSSRFKIFIIDECQLLHGETWATVLNS LEKLSQHIVFVMSTPELDMLPRSAVSRSQKYHFPKIKDSDISNRLEKICVKEGLDYDR VALDFIAAKSNGSLRDAEMMLDQLSLLGKKITMSLTYELIGTVSDDELLDLLDLALSC DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCEEDSSEARRKFSGNHASEVD LQKLSHALRILSETEKHLRVSKNQTTWLTVALLQLSSVESNLPEVNDSKMCLANAQHK EGDSNSTSATGGRSNHSFTCMCNGSNSSKLGKLEDPERRLESVWKRATELCQSSSLKK FLRKQGKLSSLCVNQGLAIAELEFHNPNHVSRAEKSWKLIASSLQLVVGCNVEIRINL AVTDPVTKCEKVRKISFSLFSCSRRLQLKSRASTKSGSDSEVSQYASEKPMMSDRPIL NYCSDHAFERPHNCSYGREVVRAFRNSEGNILSTGATSSCGSLRDDTSLNPAYGVDSS KGEGRDCECQIFSIQEPDYQPNCFPRVLRPQKKVHLSDSAKMNSVSNQEENKLALSIP GMSSFEKPLVSNDSYVFCCSNDEDRLRENSEVLCWRTPTFPLKKAWQLTHQRRRSHWV DWVLPCSTAK" CDS join(23014720..23016360,23016454..23016673, 23017335..23017520,23017671..23017889,23018601..23018981, 23019446..23019501,23020041..23020115) /locus_tag="TCM_014535" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 5" /protein_id="EOY22329.1" /db_xref="Phytozome:POPTR_0012s09330.1" /translation="MDGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSSLFDNVK WETNSSNGISLQLVNGCPEAGLEHNEIRGPEYLGFDERREEQGHEFRLHSVPETFSSR LITCENVEQVGKTGSPVRAKQVGELDDCNGDFKDYGLHEEEVHRKGQLSERSHSSFKD KGMNLTCMTATINSVEDVDSCNEPIVGSSPMERVNHRASKQKLQSRNQVKLYGANGDV ASRAGSPCPSLDVVSNRSRQLYGDEDVDVVDCIHRGCGISYCWSKTPRLRESNPSSDF EDLPLLSGDTSETTLCGQSFWKCINGEINPHSDTPRSLSQKFRPKSFDELVGQSVVVR SLLSAISKGRITSFYLFHGPRGTGKTSASKIFAAALNCLSLEEFKPCGRCRECILFYS GRSRDVKEVDSLRINRLDRLRSLVKNAVVPPVSSRFKIFIIDECQLLHGETWATVLNS LEKLSQHIVFVMSTPELDMLPRSAVSRSQKYHFPKIKDSDISNRLEKICVKEGLDYDR VALDFIAAKSNGSLRDAEMMLDQLSLLGKKITMSLTYELIGTVSDDELLDLLDLALSC DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCEEDSSEARRKFSGNHASEVD LQKLSHALRILSETEKHLRVSKNQTTWLTVALLQLSSVESNLPEVNDSKMCLANAQHK EGDSNSTSATGGRSNHSFTCMCNGSNSSKLGKLEDPERRLESVWKRATELCQSSSLKK FLRKQGKLSSLCVNQGLAIAELEFHNPNHVSRAEKSWKLIASSLQLVVGCNVEIRINL AVTDPVTKCEKVRKISFSLFSCSRRLQLKSRASTKSGSDSEVSQYASEKPMMSDRPIL NYCSDHAFERPHNCSYGREVVRAFRNMRENSEVLCWRTPTFPLKKAWQLTHQRRRSHW VDWVLPCSTAK" CDS join(23014720..23016360,23016454..23016673, 23017335..23017520,23017671..23017889,23018601..23019324, 23019444..23019540) /locus_tag="TCM_014535" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013823" /codon_start=1 /product="AAA-type ATPase family protein isoform 2" /protein_id="EOY22326.1" /translation="MDGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSSLFDNVK WETNSSNGISLQLVNGCPEAGLEHNEIRGPEYLGFDERREEQGHEFRLHSVPETFSSR LITCENVEQVGKTGSPVRAKQVGELDDCNGDFKDYGLHEEEVHRKGQLSERSHSSFKD KGMNLTCMTATINSVEDVDSCNEPIVGSSPMERVNHRASKQKLQSRNQVKLYGANGDV ASRAGSPCPSLDVVSNRSRQLYGDEDVDVVDCIHRGCGISYCWSKTPRLRESNPSSDF EDLPLLSGDTSETTLCGQSFWKCINGEINPHSDTPRSLSQKFRPKSFDELVGQSVVVR SLLSAISKGRITSFYLFHGPRGTGKTSASKIFAAALNCLSLEEFKPCGRCRECILFYS GRSRDVKEVDSLRINRLDRLRSLVKNAVVPPVSSRFKIFIIDECQLLHGETWATVLNS LEKLSQHIVFVMSTPELDMLPRSAVSRSQKYHFPKIKDSDISNRLEKICVKEGLDYDR VALDFIAAKSNGSLRDAEMMLDQLSLLGKKITMSLTYELIGTVSDDELLDLLDLALSC DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCEEDSSEARRKFSGNHASEVD LQKLSHALRILSETEKHLRVSKNQTTWLTVALLQLSSVESNLPEVNDSKMCLANAQHK EGDSNSTSATGGRSNHSFTCMCNGSNSSKLGKLEDPERRLESVWKRATELCQSSSLKK FLRKQGKLSSLCVNQGLAIAELEFHNPNHVSRAEKSWKLIASSLQLVVGCNVEIRINL AVTDPVTKCEKVRKISFSLFSCSRRLQLKSRASTKSGSDSEVSQYASEKPMMSDRPIL NYCSDHAFERPHNCSYGREVVRAFRNSEGNILSTGATSSCGSLRDDTSLNPAYGVDSS KGEGRDCECQIFSIQEPDYQPNCFPRVLRPQKKVHLSDSAKMNSVSNQEENKLALSIP GMSSFEKPLVSNDSYVFCCSNDEDRLRENSEVLCWRTPTFPLKKVTALILSTFLEN" CDS join(23014720..23016360,23016454..23016673, 23017335..23017520,23017671..23017889,23018601..23019208, 23019444..23019461) /locus_tag="TCM_014535" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 3" /protein_id="EOY22327.1" /db_xref="Phytozome:POPTR_0012s09330.1" /translation="MDGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSSLFDNVK WETNSSNGISLQLVNGCPEAGLEHNEIRGPEYLGFDERREEQGHEFRLHSVPETFSSR LITCENVEQVGKTGSPVRAKQVGELDDCNGDFKDYGLHEEEVHRKGQLSERSHSSFKD KGMNLTCMTATINSVEDVDSCNEPIVGSSPMERVNHRASKQKLQSRNQVKLYGANGDV ASRAGSPCPSLDVVSNRSRQLYGDEDVDVVDCIHRGCGISYCWSKTPRLRESNPSSDF EDLPLLSGDTSETTLCGQSFWKCINGEINPHSDTPRSLSQKFRPKSFDELVGQSVVVR SLLSAISKGRITSFYLFHGPRGTGKTSASKIFAAALNCLSLEEFKPCGRCRECILFYS GRSRDVKEVDSLRINRLDRLRSLVKNAVVPPVSSRFKIFIIDECQLLHGETWATVLNS LEKLSQHIVFVMSTPELDMLPRSAVSRSQKYHFPKIKDSDISNRLEKICVKEGLDYDR VALDFIAAKSNGSLRDAEMMLDQLSLLGKKITMSLTYELIGTVSDDELLDLLDLALSC DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCEEDSSEARRKFSGNHASEVD LQKLSHALRILSETEKHLRVSKNQTTWLTVALLQLSSVESNLPEVNDSKMCLANAQHK EGDSNSTSATGGRSNHSFTCMCNGSNSSKLGKLEDPERRLESVWKRATELCQSSSLKK FLRKQGKLSSLCVNQGLAIAELEFHNPNHVSRAEKSWKLIASSLQLVVGCNVEIRINL AVTDPVTKCEKVRKISFSLFSCSRRLQLKSRASTKSGSDSEVSQYASEKPMMSDRPIL NYCSDHAFERPHNCSYGREVVRAFRNSEGNILSTGATSSCGSLRDDTSLNPAYGVDSS KGEGRDCECQIFSIQEPDYQPNCFPRVLRPQKKVHLSDSAKMNSIEGEL" CDS join(23014720..23016360,23016454..23016673, 23017335..23017520,23017671..23017889,23018601..23019208, 23019444..23019461) /locus_tag="TCM_014535" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 3" /protein_id="EOY22328.1" /db_xref="Phytozome:POPTR_0012s09330.1" /translation="MDGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSSLFDNVK WETNSSNGISLQLVNGCPEAGLEHNEIRGPEYLGFDERREEQGHEFRLHSVPETFSSR LITCENVEQVGKTGSPVRAKQVGELDDCNGDFKDYGLHEEEVHRKGQLSERSHSSFKD KGMNLTCMTATINSVEDVDSCNEPIVGSSPMERVNHRASKQKLQSRNQVKLYGANGDV ASRAGSPCPSLDVVSNRSRQLYGDEDVDVVDCIHRGCGISYCWSKTPRLRESNPSSDF EDLPLLSGDTSETTLCGQSFWKCINGEINPHSDTPRSLSQKFRPKSFDELVGQSVVVR SLLSAISKGRITSFYLFHGPRGTGKTSASKIFAAALNCLSLEEFKPCGRCRECILFYS GRSRDVKEVDSLRINRLDRLRSLVKNAVVPPVSSRFKIFIIDECQLLHGETWATVLNS LEKLSQHIVFVMSTPELDMLPRSAVSRSQKYHFPKIKDSDISNRLEKICVKEGLDYDR VALDFIAAKSNGSLRDAEMMLDQLSLLGKKITMSLTYELIGTVSDDELLDLLDLALSC DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCEEDSSEARRKFSGNHASEVD LQKLSHALRILSETEKHLRVSKNQTTWLTVALLQLSSVESNLPEVNDSKMCLANAQHK EGDSNSTSATGGRSNHSFTCMCNGSNSSKLGKLEDPERRLESVWKRATELCQSSSLKK FLRKQGKLSSLCVNQGLAIAELEFHNPNHVSRAEKSWKLIASSLQLVVGCNVEIRINL AVTDPVTKCEKVRKISFSLFSCSRRLQLKSRASTKSGSDSEVSQYASEKPMMSDRPIL NYCSDHAFERPHNCSYGREVVRAFRNSEGNILSTGATSSCGSLRDDTSLNPAYGVDSS KGEGRDCECQIFSIQEPDYQPNCFPRVLRPQKKVHLSDSAKMNSIEGEL" CDS join(23014720..23016360,23016454..23016673, 23017335..23017520,23017671..23017889,23018601..23019328) /locus_tag="TCM_014535" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 7" /protein_id="EOY22331.1" /db_xref="Phytozome:POPTR_0012s09330.1" /translation="MDGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSSLFDNVK WETNSSNGISLQLVNGCPEAGLEHNEIRGPEYLGFDERREEQGHEFRLHSVPETFSSR LITCENVEQVGKTGSPVRAKQVGELDDCNGDFKDYGLHEEEVHRKGQLSERSHSSFKD KGMNLTCMTATINSVEDVDSCNEPIVGSSPMERVNHRASKQKLQSRNQVKLYGANGDV ASRAGSPCPSLDVVSNRSRQLYGDEDVDVVDCIHRGCGISYCWSKTPRLRESNPSSDF EDLPLLSGDTSETTLCGQSFWKCINGEINPHSDTPRSLSQKFRPKSFDELVGQSVVVR SLLSAISKGRITSFYLFHGPRGTGKTSASKIFAAALNCLSLEEFKPCGRCRECILFYS GRSRDVKEVDSLRINRLDRLRSLVKNAVVPPVSSRFKIFIIDECQLLHGETWATVLNS LEKLSQHIVFVMSTPELDMLPRSAVSRSQKYHFPKIKDSDISNRLEKICVKEGLDYDR VALDFIAAKSNGSLRDAEMMLDQLSLLGKKITMSLTYELIGTVSDDELLDLLDLALSC DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCEEDSSEARRKFSGNHASEVD LQKLSHALRILSETEKHLRVSKNQTTWLTVALLQLSSVESNLPEVNDSKMCLANAQHK EGDSNSTSATGGRSNHSFTCMCNGSNSSKLGKLEDPERRLESVWKRATELCQSSSLKK FLRKQGKLSSLCVNQGLAIAELEFHNPNHVSRAEKSWKLIASSLQLVVGCNVEIRINL AVTDPVTKCEKVRKISFSLFSCSRRLQLKSRASTKSGSDSEVSQYASEKPMMSDRPIL NYCSDHAFERPHNCSYGREVVRAFRNSEGNILSTGATSSCGSLRDDTSLNPAYGVDSS KGEGRDCECQIFSIQEPDYQPNCFPRVLRPQKKVHLSDSAKMNSVSNQEENKLALSIP GMSSFEKPLVSNDSYVFCCSNDEDR" CDS join(23014720..23016360,23016454..23016673, 23017335..23017520,23017671..23017889,23018601..>23019322) /locus_tag="TCM_014535" /note="encoded by transcript variant 11; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 11" /protein_id="EOY22335.1" /db_xref="Phytozome:POPTR_0012s09330.1" /translation="MDGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSSLFDNVK WETNSSNGISLQLVNGCPEAGLEHNEIRGPEYLGFDERREEQGHEFRLHSVPETFSSR LITCENVEQVGKTGSPVRAKQVGELDDCNGDFKDYGLHEEEVHRKGQLSERSHSSFKD KGMNLTCMTATINSVEDVDSCNEPIVGSSPMERVNHRASKQKLQSRNQVKLYGANGDV ASRAGSPCPSLDVVSNRSRQLYGDEDVDVVDCIHRGCGISYCWSKTPRLRESNPSSDF EDLPLLSGDTSETTLCGQSFWKCINGEINPHSDTPRSLSQKFRPKSFDELVGQSVVVR SLLSAISKGRITSFYLFHGPRGTGKTSASKIFAAALNCLSLEEFKPCGRCRECILFYS GRSRDVKEVDSLRINRLDRLRSLVKNAVVPPVSSRFKIFIIDECQLLHGETWATVLNS LEKLSQHIVFVMSTPELDMLPRSAVSRSQKYHFPKIKDSDISNRLEKICVKEGLDYDR VALDFIAAKSNGSLRDAEMMLDQLSLLGKKITMSLTYELIGTVSDDELLDLLDLALSC DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCEEDSSEARRKFSGNHASEVD LQKLSHALRILSETEKHLRVSKNQTTWLTVALLQLSSVESNLPEVNDSKMCLANAQHK EGDSNSTSATGGRSNHSFTCMCNGSNSSKLGKLEDPERRLESVWKRATELCQSSSLKK FLRKQGKLSSLCVNQGLAIAELEFHNPNHVSRAEKSWKLIASSLQLVVGCNVEIRINL AVTDPVTKCEKVRKISFSLFSCSRRLQLKSRASTKSGSDSEVSQYASEKPMMSDRPIL NYCSDHAFERPHNCSYGREVVRAFRNSEGNILSTGATSSCGSLRDDTSLNPAYGVDSS KGEGRDCECQIFSIQEPDYQPNCFPRVLRPQKKVHLSDSAKMNSVSNQEENKLALSIP GMSSFEKPLVSNDSYVFCCSNDED" CDS join(23014720..23016360,23016454..23016673, 23017335..23017520,23017671..23017889,23018601..23018859, 23018956..>23019322) /locus_tag="TCM_014535" /note="encoded by transcript variant 9; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 9" /protein_id="EOY22333.1" /db_xref="Phytozome:POPTR_0012s09330.1" /translation="MDGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSSLFDNVK WETNSSNGISLQLVNGCPEAGLEHNEIRGPEYLGFDERREEQGHEFRLHSVPETFSSR LITCENVEQVGKTGSPVRAKQVGELDDCNGDFKDYGLHEEEVHRKGQLSERSHSSFKD KGMNLTCMTATINSVEDVDSCNEPIVGSSPMERVNHRASKQKLQSRNQVKLYGANGDV ASRAGSPCPSLDVVSNRSRQLYGDEDVDVVDCIHRGCGISYCWSKTPRLRESNPSSDF EDLPLLSGDTSETTLCGQSFWKCINGEINPHSDTPRSLSQKFRPKSFDELVGQSVVVR SLLSAISKGRITSFYLFHGPRGTGKTSASKIFAAALNCLSLEEFKPCGRCRECILFYS GRSRDVKEVDSLRINRLDRLRSLVKNAVVPPVSSRFKIFIIDECQLLHGETWATVLNS LEKLSQHIVFVMSTPELDMLPRSAVSRSQKYHFPKIKDSDISNRLEKICVKEGLDYDR VALDFIAAKSNGSLRDAEMMLDQLSLLGKKITMSLTYELIGTVSDDELLDLLDLALSC DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCEEDSSEARRKFSGNHASEVD LQKLSHALRILSETEKHLRVSKNQTTWLTVALLQLSSVESNLPEVNDSKMCLANAQHK EGDSNSTSATGGRSNHSFTCMCNGSNSSKLGKLEDPERRLESVWKRATELCQSSSLKK FLRKQGKLSSLCVNQGLAIAELEFHNPNHVSRAEKSWKLIASSLQLVVGCNVEIRINL AVTDPVTKCEKVRKISFSLFSCSRRLQLKSRASTKSGSDSEVSQEVVRAFRNSEGNIL STGATSSCGSLRDDTSLNPAYGVDSSKGEGRDCECQIFSIQEPDYQPNCFPRVLRPQK KVHLSDSAKMNSVSNQEENKLALSIPGMSSFEKPLVSNDSYVFCCSNDED" CDS join(23014720..23016360,23016454..23016673, 23017335..23017520,23017671..23017889,23018601..23018859, 23018961..23018967) /locus_tag="TCM_014535" /note="encoded by transcript variant 10; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 10" /protein_id="EOY22334.1" /db_xref="Phytozome:POPTR_0012s09330.1" /translation="MDGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSSLFDNVK WETNSSNGISLQLVNGCPEAGLEHNEIRGPEYLGFDERREEQGHEFRLHSVPETFSSR LITCENVEQVGKTGSPVRAKQVGELDDCNGDFKDYGLHEEEVHRKGQLSERSHSSFKD KGMNLTCMTATINSVEDVDSCNEPIVGSSPMERVNHRASKQKLQSRNQVKLYGANGDV ASRAGSPCPSLDVVSNRSRQLYGDEDVDVVDCIHRGCGISYCWSKTPRLRESNPSSDF EDLPLLSGDTSETTLCGQSFWKCINGEINPHSDTPRSLSQKFRPKSFDELVGQSVVVR SLLSAISKGRITSFYLFHGPRGTGKTSASKIFAAALNCLSLEEFKPCGRCRECILFYS GRSRDVKEVDSLRINRLDRLRSLVKNAVVPPVSSRFKIFIIDECQLLHGETWATVLNS LEKLSQHIVFVMSTPELDMLPRSAVSRSQKYHFPKIKDSDISNRLEKICVKEGLDYDR VALDFIAAKSNGSLRDAEMMLDQLSLLGKKITMSLTYELIGTVSDDELLDLLDLALSC DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCEEDSSEARRKFSGNHASEVD LQKLSHALRILSETEKHLRVSKNQTTWLTVALLQLSSVESNLPEVNDSKMCLANAQHK EGDSNSTSATGGRSNHSFTCMCNGSNSSKLGKLEDPERRLESVWKRATELCQSSSLKK FLRKQGKLSSLCVNQGLAIAELEFHNPNHVSRAEKSWKLIASSLQLVVGCNVEIRINL AVTDPVTKCEKVRKISFSLFSCSRRLQLKSRASTKSGSDSEVSHG" CDS join(23014720..23016360,23016454..23016673, 23017335..23017520,23017671..23017889,23018601..23018859, 23018961..23018967) /locus_tag="TCM_014535" /note="encoded by transcript variant 12; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 10" /protein_id="EOY22336.1" /db_xref="Phytozome:POPTR_0012s09330.1" /translation="MDGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSSLFDNVK WETNSSNGISLQLVNGCPEAGLEHNEIRGPEYLGFDERREEQGHEFRLHSVPETFSSR LITCENVEQVGKTGSPVRAKQVGELDDCNGDFKDYGLHEEEVHRKGQLSERSHSSFKD KGMNLTCMTATINSVEDVDSCNEPIVGSSPMERVNHRASKQKLQSRNQVKLYGANGDV ASRAGSPCPSLDVVSNRSRQLYGDEDVDVVDCIHRGCGISYCWSKTPRLRESNPSSDF EDLPLLSGDTSETTLCGQSFWKCINGEINPHSDTPRSLSQKFRPKSFDELVGQSVVVR SLLSAISKGRITSFYLFHGPRGTGKTSASKIFAAALNCLSLEEFKPCGRCRECILFYS GRSRDVKEVDSLRINRLDRLRSLVKNAVVPPVSSRFKIFIIDECQLLHGETWATVLNS LEKLSQHIVFVMSTPELDMLPRSAVSRSQKYHFPKIKDSDISNRLEKICVKEGLDYDR VALDFIAAKSNGSLRDAEMMLDQLSLLGKKITMSLTYELIGTVSDDELLDLLDLALSC DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCEEDSSEARRKFSGNHASEVD LQKLSHALRILSETEKHLRVSKNQTTWLTVALLQLSSVESNLPEVNDSKMCLANAQHK EGDSNSTSATGGRSNHSFTCMCNGSNSSKLGKLEDPERRLESVWKRATELCQSSSLKK FLRKQGKLSSLCVNQGLAIAELEFHNPNHVSRAEKSWKLIASSLQLVVGCNVEIRINL AVTDPVTKCEKVRKISFSLFSCSRRLQLKSRASTKSGSDSEVSHG" mRNA join(23014815..23016360,23016454..23016673, 23017335..23017520,23017671..23017889,23018601..23018859, 23018956..23019324,23019442..23019501,23020041..23020363) /locus_tag="TCM_014535" /product="AAA-type ATPase family protein isoform 6" /inference="alignment:exonerate- protein:2:ricco:30147.m013823" /inference="similar to AA sequence:Phytozome:POPTR_0012s09330.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5091t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5091t4; inference alignment:Newbler:10:TSA:cgbaL_g02059t00002" mRNA join(23014815..23016360,23016454..23016673, 23017335..23017520,23017671..23017889,23018601..23018859, 23018961..23019208,23019444..23019501,23020039..23020363) /locus_tag="TCM_014535" /product="AAA-type ATPase family protein isoform 8" /inference="alignment:exonerate- protein:2:ricco:30147.m013823" /inference="similar to AA sequence:Phytozome:POPTR_0012s09330.1" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5091t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5091t4; inference alignment:Newbler:10:TSA:cgbaL_g02059t00002" CDS join(23014816..23016360,23016454..23016673, 23017335..23017520,23017671..23017889,23018601..23018859, 23018956..23019324,23019442..23019448) /locus_tag="TCM_014535" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 6" /protein_id="EOY22330.1" /db_xref="Phytozome:POPTR_0012s09330.1" /db_xref="TAIR:AT4G24790.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3J8" /translation="MSKFSSLFDNVKWETNSSNGISLQLVNGCPEAGLEHNEIRGPEY LGFDERREEQGHEFRLHSVPETFSSRLITCENVEQVGKTGSPVRAKQVGELDDCNGDF KDYGLHEEEVHRKGQLSERSHSSFKDKGMNLTCMTATINSVEDVDSCNEPIVGSSPME RVNHRASKQKLQSRNQVKLYGANGDVASRAGSPCPSLDVVSNRSRQLYGDEDVDVVDC IHRGCGISYCWSKTPRLRESNPSSDFEDLPLLSGDTSETTLCGQSFWKCINGEINPHS DTPRSLSQKFRPKSFDELVGQSVVVRSLLSAISKGRITSFYLFHGPRGTGKTSASKIF AAALNCLSLEEFKPCGRCRECILFYSGRSRDVKEVDSLRINRLDRLRSLVKNAVVPPV SSRFKIFIIDECQLLHGETWATVLNSLEKLSQHIVFVMSTPELDMLPRSAVSRSQKYH FPKIKDSDISNRLEKICVKEGLDYDRVALDFIAAKSNGSLRDAEMMLDQLSLLGKKIT MSLTYELIGTVSDDELLDLLDLALSCDTSNTVIRARELMRSKIDPMQLISQLANLIMD ILAGKCEEDSSEARRKFSGNHASEVDLQKLSHALRILSETEKHLRVSKNQTTWLTVAL LQLSSVESNLPEVNDSKMCLANAQHKEGDSNSTSATGGRSNHSFTCMCNGSNSSKLGK LEDPERRLESVWKRATELCQSSSLKKFLRKQGKLSSLCVNQGLAIAELEFHNPNHVSR AEKSWKLIASSLQLVVGCNVEIRINLAVTDPVTKCEKVRKISFSLFSCSRRLQLKSRA STKSGSDSEVSQEVVRAFRNSEGNILSTGATSSCGSLRDDTSLNPAYGVDSSKGEGRD CECQIFSIQEPDYQPNCFPRVLRPQKKVHLSDSAKMNSVSNQEENKLALSIPGMSSFE KPLVSNDSYVFCCSNDEDRD" CDS join(23014816..23016360,23016454..23016673, 23017335..23017520,23017671..23017889,23018601..23018859, 23018961..23018967) /locus_tag="TCM_014535" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 8" /protein_id="EOY22332.1" /db_xref="Phytozome:POPTR_0012s09330.1" /db_xref="TAIR:AT4G24790.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3J8" /translation="MSKFSSLFDNVKWETNSSNGISLQLVNGCPEAGLEHNEIRGPEY LGFDERREEQGHEFRLHSVPETFSSRLITCENVEQVGKTGSPVRAKQVGELDDCNGDF KDYGLHEEEVHRKGQLSERSHSSFKDKGMNLTCMTATINSVEDVDSCNEPIVGSSPME RVNHRASKQKLQSRNQVKLYGANGDVASRAGSPCPSLDVVSNRSRQLYGDEDVDVVDC IHRGCGISYCWSKTPRLRESNPSSDFEDLPLLSGDTSETTLCGQSFWKCINGEINPHS DTPRSLSQKFRPKSFDELVGQSVVVRSLLSAISKGRITSFYLFHGPRGTGKTSASKIF AAALNCLSLEEFKPCGRCRECILFYSGRSRDVKEVDSLRINRLDRLRSLVKNAVVPPV SSRFKIFIIDECQLLHGETWATVLNSLEKLSQHIVFVMSTPELDMLPRSAVSRSQKYH FPKIKDSDISNRLEKICVKEGLDYDRVALDFIAAKSNGSLRDAEMMLDQLSLLGKKIT MSLTYELIGTVSDDELLDLLDLALSCDTSNTVIRARELMRSKIDPMQLISQLANLIMD ILAGKCEEDSSEARRKFSGNHASEVDLQKLSHALRILSETEKHLRVSKNQTTWLTVAL LQLSSVESNLPEVNDSKMCLANAQHKEGDSNSTSATGGRSNHSFTCMCNGSNSSKLGK LEDPERRLESVWKRATELCQSSSLKKFLRKQGKLSSLCVNQGLAIAELEFHNPNHVSR AEKSWKLIASSLQLVVGCNVEIRINLAVTDPVTKCEKVRKISFSLFSCSRRLQLKSRA STKSGSDSEVSHG" gene complement(23020969..23024504) /locus_tag="TCM_014537" /note="dbxref CacaoGD:Thecc1EG014537" mRNA complement(join(23020969..23021232,23022371..23023285, 23023608..23024504)) /locus_tag="TCM_014537" /product="S-adenosyl-L-homocysteine hydrolase" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g014470.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020226t1" /inference="similar to AA sequence:Phytozome:Glyma05g28480.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01728t00001" CDS complement(join(23022539..23023285,23023608..23024318)) /locus_tag="TCM_014537" /note="paralog of Thecc1EG020226t1" /codon_start=1 /product="S-adenosyl-L-homocysteine hydrolase" /protein_id="EOY22337.1" /db_xref="Phytozome:Glyma05g28480.2" /db_xref="TAIR:AT4G13940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LK36" /translation="MALTISRTPTGREYKVKDISQADFGRLEIELAEVEMPGLMACRA EFGPTQPLKDARITGSLHMTIQTAVLIETLTALGAQVRWCSCNIFSTQDHAAAAIARD SASVFAWKGETLEEYWWCTEKALEWGPGGGPDLIVDDGGDATLLIHEGVKAEEVYERS GKLPNPNETENAEFRIVLSIIKEGLLVDPKKYRRMRERLVGVSEETTTGVKRLYQMQA NGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKIAVVCGYGDVGKG CAAALKAAGARVIVTEIDPICALQALMEGIPVLTLEDVVAEADIFVTTTGNKDIIMVC HMKQMKNNAIVCNIGHFDNEIDMLGLETYPGIKRITIKPQTDRWVFPETNRGIIVLAE GRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKERGTGKYEKKVYVLPKHLDEKVAAL HLGKLGAKLTKLTPEQAAYISVPVEGPYKPPRYRY" mobile_element complement(23025917..23026318) /note="source:CACAO_M_S_E85473_F233_scaffold_7 2418 2818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23029167..23031479) /note="source:CACAO_M_S_E84376_F22_scaffold_6 16105 18450" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23032285..23034194 /locus_tag="TCM_014538" /note="dbxref CacaoGD:Thecc1EG014538" mRNA join(23032285..23032480,23033481..23033805, 23033884..23034194) /locus_tag="TCM_014538" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007053t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(23033746..23033805,23033884..23034165) /locus_tag="TCM_014538" /note="paralog of Thecc1EG007053t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22338.1" /translation="MDMKSEGKLSFDAHLSSQIKDICKCVDNKEELKSEIKSLKYEIE KLRGLLEYDKNNQKLKEKEKQQEYECHDPELPIEPVTTVAKPRQIFFTPNVDRNLARL SYQLSHFPGEQ" mobile_element complement(23034031..23036138) /note="source:CACAO_M_E59482_F82_scaffold_9 1214 3323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23036239..23037409) /note="source:CACAO_M_E59482_F82_scaffold_9 1 1172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23038619..23041925 /note="source:CACAO_M_E22912_F85_scaffold_3 1 3307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23041867..23041943 /note="source:scaffold_6_CACTA_0699 18377 18458" /mobile_element_type="transposon:TIR/CACTA" gene complement(23044760..23053042) /locus_tag="TCM_014539" /note="dbxref CacaoGD:Thecc1EG014539" mRNA complement(join(23044760..23045006,23045439..23045525, 23046148..23046649,23052958..23053042)) /locus_tag="TCM_014539" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g29330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007052t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(23044824..23045006,23045439..23045525, 23046148..23046648)) /locus_tag="TCM_014539" /note="paralog of Thecc1EG007052t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22339.1" /translation="MKRWTENANDDALAVMDNNVDPKYQTMLRYASLSSHCNRLCHVA SQFVETFNKARSEIANLTRRYEEMCKVNIDGISNLTKHVHDLTRVKAKGKIGAKIEKK KKPRKCGNCTKEGHTRNKCPQLELTLRSLDSSSCLLNDNDVDVYEKNNEVWPSQLGTL FGGYSLEVFTESYFCVAGALMGLLKPGRMSMFGTLLYHSYEAVASELQLQVCNTAMLS SATQTFHQAVYLALQRCTFSTATLSSEVTLPLAVKSAL" mobile_element complement(23049017..23052036) /note="source:scaffold_9_CACTA_0932 178 2515" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23052354..23052503 /note="source:scaffold_4_CACTA_0503 6789 6942" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23052690..23052785 /note="source:scaffold_4_CACTA_0511 5714 5809" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23053564..23053801 /note="source:scaffold_4_CACTA_0503 6941 7241" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23053901..23053962) /note="source:scaffold_4_CACTA_0503 7312 7373" /mobile_element_type="transposon:TIR/CACTA" gene 23055127..23061651 /locus_tag="TCM_014541" /note="dbxref CacaoGD:Thecc1EG014541" mRNA join(23055127..23055475,23055570..23055926, 23056537..23056805,23056961..23057048,23057179..23057354, 23057926..23058016,23058565..23058687,23058817..23058864, 23058972..23059048,23059511..23059599,23059873..23059984, 23060178..23060280,23060457..23061651) /locus_tag="TCM_014541" /product="Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09960.1" /inference="similar to AA sequence:ricco:30147.m013822" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5128t3" mRNA join(23055127..23055475,23055570..23055804, 23056537..23056805,23056961..23057048,23057179..23057354, 23057926..23058016,23058565..23058687,23058817..23058864, 23058972..23059048,23059511..23059599,23059873..23059984, 23060178..23060280,23060457..23061651) /locus_tag="TCM_014541" /product="Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09960.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09960.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:PASA:2:TSA:puevd3b014049t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5128t3" CDS join(23055301..23055475,23055570..23055926, 23056537..23056805,23056961..23057048,23057179..23057354, 23057926..23058016,23058565..23058687,23058817..23058864, 23058972..23059048,23059511..23059599,23059873..23059984, 23060178..23060280,23060457..23060686) /locus_tag="TCM_014541" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013822" /codon_start=1 /product="Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 isoform 1" /protein_id="EOY22340.1" /db_xref="TAIR:AT3G48380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STL8" /translation="MEKDNRKIRVECRKLLITRNELDLQWLIGSPFFPPLTILSTFRC IHSDPSGPDFHRESEEIRALLLKGFDVIGALIVGKSDTEKTAVRAIEAARKLRKVLSG STNSVNEETIGAVADPDTGDIRFFVSETEGSTSLELVNSVSYDENTEKFVWETGCLLR CEIPIKLPFCFPVNKPADAENIFLRAVEAVIAKFKDPNVVYMVEASSKASSDVVQPVI LRGEELDFDTALPNIELLDKAVHNSDQKLLPCAHFCLKNKSTPELFSVENADIIQISV LLNRSEKSPKCKAPAVEYFPAMEETRLLIVDFNLEVLCYAVQGIPLMHAVSKLVIPGL VDQLNLMKKMTLPNLLTQHPQLHPYHFSLPGIAHPITVAYELNYGETEMKQVDIRRSL HLRLGLPFDRPLIRIANALDLSTKDRSSNSSTRRGSSLLKDVHIGIPSSGVSGGSVSL VQGSYEYYHYLQDGFDDSGWGCAYRSLQTIISWFRLQHYSSIDVPSHREIQQSLVDIG DKDPSFIGSREWIGAIELSFVLDKLLGVSCKVINVRSGSELPEKCRELAMHFENQGTP IMIGGGVLAYTLLGVDYNEATGDCAFLILDPHYTGTDDPKKIVNGGWCGWKKSIDSRG KSFFLHDKFYNLLLPQRPNMV" mRNA join(<23055447..23055475,23055570..23055926, 23056537..23056805,23056961..23057048,23057179..23057354, 23058971..23059048,23059511..23059599,23059873..23059984, 23060178..23060280,23060457..23061298) /locus_tag="TCM_014541" /product="Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09960.1" /inference="similar to AA sequence:frave:gene09894" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1099t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5128t3" CDS join(<23055448..23055475,23055570..23055926, 23056537..23056805,23056961..23057048,23057179..23057354, 23058971..23059048,23059511..23059599,23059873..23059984, 23060178..23060280,23060457..23060686) /locus_tag="TCM_014541" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene09894" /codon_start=1 /product="Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 isoform 3" /protein_id="EOY22342.1" /db_xref="TAIR:AT3G48380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STL8" /translation="SGPDFHRESEEIRALLLKGFDVIGALIVGKSDTEKTAVRAIEAA RKLRKVLSGSTNSVNEETIGAVADPDTGDIRFFVSETEGSTSLELVNSVSYDENTEKF VWETGCLLRCEIPIKLPFCFPVNKPADAENIFLRAVEAVIAKFKDPNVVYMVEASSKA SSDVVQPVILRGEELDFDTALPNIELLDKAVHNSDQKLLPCAHFCLKNKSTPELFSVE NADIIQISVLLNRSEKSPKCKAPAVEYFPAMEETRLLIVDFNLEVLCYAVQGIPLMHA VSKLVIPGLVDQLNLMKKMTLPNLLTQHPQVSGGSVSLVQGSYEYYHYLQDGFDDSGW GCAYRSLQTIISWFRLQHYSSIDVPSHREIQQSLVDIGDKDPSFIGSREWIGAIELSF VLDKLLGVSCKVINVRSGSELPEKCRELAMHFENQGTPIMIGGGVLAYTLLGVDYNEA TGDCAFLILDPHYTGTDDPKKIVNGGWCGWKKSIDSRGKSFFLHDKFYNLLLPQRPNM V" CDS join(23055717..23055804,23056537..23056805, 23056961..23057048,23057179..23057354,23057926..23058016, 23058565..23058687,23058817..23058864,23058972..23059048, 23059511..23059599,23059873..23059984,23060178..23060280, 23060457..23060686) /locus_tag="TCM_014541" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 isoform 2" /protein_id="EOY22341.1" /db_xref="Phytozome:POPTR_0015s09960.1" /db_xref="TAIR:AT3G48380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STL8" /translation="MRRRSELLPIQIPGTFVSLYRRLRVRRASNAENIFLRAVEAVIA KFKDPNVVYMVEASSKASSDVVQPVILRGEELDFDTALPNIELLDKAVHNSDQKLLPC AHFCLKNKSTPELFSVENADIIQISVLLNRSEKSPKCKAPAVEYFPAMEETRLLIVDF NLEVLCYAVQGIPLMHAVSKLVIPGLVDQLNLMKKMTLPNLLTQHPQLHPYHFSLPGI AHPITVAYELNYGETEMKQVDIRRSLHLRLGLPFDRPLIRIANALDLSTKDRSSNSST RRGSSLLKDVHIGIPSSGVSGGSVSLVQGSYEYYHYLQDGFDDSGWGCAYRSLQTIIS WFRLQHYSSIDVPSHREIQQSLVDIGDKDPSFIGSREWIGAIELSFVLDKLLGVSCKV INVRSGSELPEKCRELAMHFENQGTPIMIGGGVLAYTLLGVDYNEATGDCAFLILDPH YTGTDDPKKIVNGGWCGWKKSIDSRGKSFFLHDKFYNLLLPQRPNMV" gene 23061931..23066066 /locus_tag="TCM_014542" /note="dbxref CacaoGD:Thecc1EG014542" mRNA join(23061931..23062822,23062943..23064546, 23065289..23066066) /locus_tag="TCM_014542" /product="Pentatricopeptide repeat superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09896" /inference="similar to AA sequence:ricco:29726.m003999" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5107t1; alternateUTRof:Thecc1EG014542t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5107t2" mRNA join(23061931..23062822,23062943..23064546, 23065303..23066066) /locus_tag="TCM_014542" /product="Pentatricopeptide repeat superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09896" /inference="similar to AA sequence:ricco:29726.m003999" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5107t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5107t2" CDS join(23061972..23062822,23062943..23064260) /locus_tag="TCM_014542" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29726.m003999" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein isoform 1" /protein_id="EOY22343.1" /db_xref="TAIR:AT5G50280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHD5" /translation="MSLTQQTLSSSNPFIFHTHFLNNHPSKPPLFLSTSKSFPSFSIS ATPPPPTPHSSSPIFLPFLQEPQQQELETENPKSQELGKEEDDVKDPIIRFFKSRPST PDPPRQGKFSLQKNRRSSWHLAPDIRSLPDPESDSEPEPDGENIFSEAKQHLDSTPED YTELPVGIVGDIVRIAKNLPENSTLGELLGGYQGKVSQKECLEVLVLMGKEGLVLGCL YFFEWMGLQEPLLVTPRACSVLFPVLGRAGMGDKLMVLFRNLPQSRVFRDVHVYNATI SGLLCSKRYDDAWKVYEAMEANNVQPDHVTCSIVITIMRKTGRSAKDAWEFFERMNRK GVKWSPEVLGAIIKSFCDEGLKHEALIIQSEMEKKGVPSNAIVYNTLMDAYSKSNQIE EVEGLFAEMKAKGLVPTSATFNILMDAYSRRMQPEIVENLLLEMQDMGLKPDAKSYTC LISAYGRQKKMSDKAADAFLRMKKVGVKPTSHSYTSLIHAYSISGWHEKAYTAFENML REGLKLSIETYTTLLDAFRRAGDTQILMKIWKLMISEKVEGTRVTFNILLDGFAKQGQ YIEARDVISEFGKIGLQPTLMTYNMLMNAYARGGQHQKLPQLLKEMAALNLKPDSVTY STMIYAFVRVRDFKRAFYYHKQMVKSGQVPDVKSYEKLKAILDVKAAKKNKKDRSAIL GIINSKMGMVKAKRKTKKDELWKNKKRHHKTPDVAHGGRQ" CDS join(23061972..23062822,23062943..23064260) /locus_tag="TCM_014542" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29726.m003999" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein isoform 1" /protein_id="EOY22344.1" /db_xref="TAIR:AT5G50280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SHD5" /translation="MSLTQQTLSSSNPFIFHTHFLNNHPSKPPLFLSTSKSFPSFSIS ATPPPPTPHSSSPIFLPFLQEPQQQELETENPKSQELGKEEDDVKDPIIRFFKSRPST PDPPRQGKFSLQKNRRSSWHLAPDIRSLPDPESDSEPEPDGENIFSEAKQHLDSTPED YTELPVGIVGDIVRIAKNLPENSTLGELLGGYQGKVSQKECLEVLVLMGKEGLVLGCL YFFEWMGLQEPLLVTPRACSVLFPVLGRAGMGDKLMVLFRNLPQSRVFRDVHVYNATI SGLLCSKRYDDAWKVYEAMEANNVQPDHVTCSIVITIMRKTGRSAKDAWEFFERMNRK GVKWSPEVLGAIIKSFCDEGLKHEALIIQSEMEKKGVPSNAIVYNTLMDAYSKSNQIE EVEGLFAEMKAKGLVPTSATFNILMDAYSRRMQPEIVENLLLEMQDMGLKPDAKSYTC LISAYGRQKKMSDKAADAFLRMKKVGVKPTSHSYTSLIHAYSISGWHEKAYTAFENML REGLKLSIETYTTLLDAFRRAGDTQILMKIWKLMISEKVEGTRVTFNILLDGFAKQGQ YIEARDVISEFGKIGLQPTLMTYNMLMNAYARGGQHQKLPQLLKEMAALNLKPDSVTY STMIYAFVRVRDFKRAFYYHKQMVKSGQVPDVKSYEKLKAILDVKAAKKNKKDRSAIL GIINSKMGMVKAKRKTKKDELWKNKKRHHKTPDVAHGGRQ" gene 23067037..23067780 /locus_tag="TCM_014543" /note="dbxref CacaoGD:Thecc1EG014543" mRNA 23067037..23067780 /locus_tag="TCM_014543" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage" CDS 23067392..23067730 /locus_tag="TCM_014543" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22345.1" /translation="MTQTLKKWLIKDMDGFNTFTEYLSMQENKSLKKGVVKAIQVGFR PNPNPKPVINAGSNAGCKRTGNRHFSPCRAAATPRGLQKTIASPCPLVTCIHNRSLPI YIPFSLGPSF" gene 23067722..23073505 /locus_tag="TCM_014544" /note="dbxref CacaoGD:Thecc1EG014544" mRNA join(23067722..23068015,23068364..23068617, 23070827..23070921,23071092..23073505) /locus_tag="TCM_014544" /product="MA3 domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013821" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039086t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007575001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8742t2" mRNA join(23067722..23068015,23068367..23068617, 23070827..23070921,23071092..23073505) /locus_tag="TCM_014544" /product="MA3 domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013821" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039086t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007575001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b014052t1a2; alternateUTRof:Thecc1EG014544t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8742t2" CDS join(23068380..23068617,23070827..23070921, 23071092..23072906) /locus_tag="TCM_014544" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG039086t1" /codon_start=1 /product="MA3 domain-containing protein isoform 1" /protein_id="EOY22346.1" /db_xref="Phytozome:GSVIVT01007575001" /db_xref="TAIR:AT5G63190.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LDN5" /translation="MASSEGFLTDEQREMLKIASQNVETALPSPRLSSSPKSPPTLLS DHQLKVPACGKAPTGGIAVRHVRRSHSGKFVRVKKDGGGGKGTWGKLLDTDGESHIDR NDPNYDSGEEPYQLVGSTISDPLDEYKKAVVSIIEEYFSTSDVELAASDLKDLGSSEY HPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFVMLLESADDLAVDI LDAVDILALFIARAVVDEILPPAFLTRAKKTLPESSKGYQVLQTAEKSYLSAPHHAEL LERRWGGSTHVTVEEVKKKIADLLREYVESGDTFEACRCIRELGVSFFHHEVVKRALV LAMEIQAAEPLMLKLLKEAAEEGLISSSQMVKGFARLAESLDDLALDIPSAKTLFQSI VPKALSEGWLDASFMKSSYEDGEAQNEDKKLRQYKEEVVTIIHEYFLSDDIPELIRSL EDLGLPEFNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLES AEDTALDILDASNELALFLARAVIDDVLVPLNLEDIASKLPSNCSGSETVRMARSLIA ARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVAEACQCIRDLGMPFFNHE VVKKALVMAMEKKNDRMLDLLQECFNEGLITINQMTKGFTRVKDGLDDLALDIPNAKD KFSFYIEYAQKKAWLLPSFGSCAVEALLTAAAS" CDS join(23068380..23068617,23070827..23070921, 23071092..23072906) /locus_tag="TCM_014544" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG039086t1" /codon_start=1 /product="MA3 domain-containing protein isoform 1" /protein_id="EOY22347.1" /db_xref="Phytozome:GSVIVT01007575001" /db_xref="TAIR:AT5G63190.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LDN5" /translation="MASSEGFLTDEQREMLKIASQNVETALPSPRLSSSPKSPPTLLS DHQLKVPACGKAPTGGIAVRHVRRSHSGKFVRVKKDGGGGKGTWGKLLDTDGESHIDR NDPNYDSGEEPYQLVGSTISDPLDEYKKAVVSIIEEYFSTSDVELAASDLKDLGSSEY HPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFVMLLESADDLAVDI LDAVDILALFIARAVVDEILPPAFLTRAKKTLPESSKGYQVLQTAEKSYLSAPHHAEL LERRWGGSTHVTVEEVKKKIADLLREYVESGDTFEACRCIRELGVSFFHHEVVKRALV LAMEIQAAEPLMLKLLKEAAEEGLISSSQMVKGFARLAESLDDLALDIPSAKTLFQSI VPKALSEGWLDASFMKSSYEDGEAQNEDKKLRQYKEEVVTIIHEYFLSDDIPELIRSL EDLGLPEFNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLES AEDTALDILDASNELALFLARAVIDDVLVPLNLEDIASKLPSNCSGSETVRMARSLIA ARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVAEACQCIRDLGMPFFNHE VVKKALVMAMEKKNDRMLDLLQECFNEGLITINQMTKGFTRVKDGLDDLALDIPNAKD KFSFYIEYAQKKAWLLPSFGSCAVEALLTAAAS" gene 23073552..23079235 /locus_tag="TCM_014545" /note="dbxref CacaoGD:Thecc1EG014545" mRNA join(23073552..23074027,23074430..23074649, 23074846..23074938,23075030..23075131,23075240..23075407, 23075487..23075575,23076359..23076480,23076667..23076848, 23077121..23077405,23078037..23078184,23078262..23079235) /locus_tag="TCM_014545" /product="Tetratricopeptide repeat (TPR)-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s09360.1" /inference="similar to AA sequence:Phytozome:GSVIVT01007574001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5126t2" CDS join(23073849..23074027,23074430..23074649, 23074846..23074938,23075030..23075131,23075240..23075407, 23075487..23075575,23076359..23076480,23076667..23076848, 23077121..23077405,23078037..23078184,23078262..23078635) /locus_tag="TCM_014545" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-containing protein" /protein_id="EOY22348.1" /db_xref="Phytozome:GSVIVT01007574001" /db_xref="TAIR:AT5G63200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AA8" /translation="MEQKTLEAPQVSIKPEVDTVESSKTLLQPPKVVVLADLNVDPPE TEDHDSLLLPAPDLTRLTNDESSHEKSTFISKESDAVEGEAKKLTKSGKCRSRISKAD SSLDCGADADGDQPSQGTPSSREEKVSSLKTGLVHVARKMPKNAHAHFVLGLMYQRLG QPQKAILAYEKAAEILVRCEVEIARPELLSLVQIHHAQCLLLENSGDNGLDKELENDE LEEILSKLKESMQSDVRQAGVWNTLGLILLKTGRLQSAIAVLSSLLALAPDDYDCLGN LGIAYLQSGNLELSARYFQDLIIKDQNHPAALMNYAAILLCKYGSVVAGAGANASEVA SGDQVASVNVAKECLLAALKSDPKAAHTWANLANAYYLIGDYRSSSKCLEKAAKLEPN CMSTRYAVAVHRIKDAERSQDPSEQLSWAGNEMASVLREGDSVPIDPPIAWAGLSMVH KTQHEIVAAFETEQNELVEVEERAIFSLKQAAGEDPDDAVQWNQLGLHSLCSQNFKTA QKYLKAAVVRFKECSYAWSNLGISIQLSEEASQAESVYKRALSLATVEQAHAIFSNLG NLYRQQKQYERAKAMFTKSLELQPGYAPAFNNLGLVFVAEGQWEEAKFCFDKALQSDP LLDAAKSNMIKTVALSRLCAGLSSFFIQD" gene 23079336..23081152 /locus_tag="TCM_014546" /note="dbxref CacaoGD:Thecc1EG014546" mRNA join(23079336..23080561,23080723..23081152) /locus_tag="TCM_014546" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010681t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09980.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3193t1" mRNA join(23079667..23080525,23080723..23081060) /locus_tag="TCM_014546" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s09980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010681t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s09980.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5116t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3193t1" CDS join(23079824..23080561,23080723..23080752) /locus_tag="TCM_014546" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010681t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY22349.1" /db_xref="Phytozome:POPTR_0015s09980.1" /db_xref="TAIR:AT1G24480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GVK0" /translation="MNLSFSKLPILLRPFLLSLILSVFFLAFLATQSPHHRLKTSLIK NTRNPPSNNSSAGGLRIRPGYSSYNAYIERQLNKTLNPKLRKIWTTRDWDRKVRVFVR FFESLKQRNLLFNDSRALSIGARVGQEVAAMRLVGVSDSVGIDLVPYPPLVVKGDFHA QPFVNRTFDFEFSNVFDHALYPWKFVGEIERTLKPGGVCVLHVALSRRADKYSANDLY SVEPLVELFKESELVEVRNVDGFGLDTEKTLGSIRTK" CDS join(23079824..23080525,23080723..23080752) /locus_tag="TCM_014546" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010681t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /protein_id="EOY22350.1" /db_xref="Phytozome:POPTR_0015s09980.1" /db_xref="TAIR:AT4G24805.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF32" /translation="MNLSFSKLPILLRPFLLSLILSVFFLAFLATQSPHHRLKTSLIK NTRNPPSNNSSAGGLRIRPGYSSYNAYIERQLNKTLNPKLRKIWTTRDWDRKVRVFVR FFESLKQRNLLFNDSRALSIGARVGQEVAAMRLVGVSDSVGIDLVPYPPLVVKGDFHA QPFVNRTFDFEFSNVFDHALYPWKFVGEIERTLKPGGVCVLHVALSRRADKYSANDLY SVEPLVELFKESELVEKTLGSIRTK" gene complement(23083307..23087202) /locus_tag="TCM_014547" /note="dbxref CacaoGD:Thecc1EG014547" mRNA complement(join(23083307..23083867,23084745..23084825, 23085102..23085148,23085489..23085584,23085969..23086035, 23086344..23086502,23086586..23086656,23086787..23087202)) /locus_tag="TCM_014547" /product="Haloacid dehalogenase-like hydrolase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30147.m013817" /inference="similar to AA sequence:Phytozome:POPTR_0015s09990.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10406t00001" CDS complement(join(23083744..23083867,23084745..23084825, 23085102..23085148,23085489..23085584,23085969..23086035, 23086344..23086502,23086586..23086656,23086787..23087116)) /locus_tag="TCM_014547" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein" /protein_id="EOY22351.1" /db_xref="Phytozome:POPTR_0015s09990.1" /db_xref="TAIR:AT3G48420.1" /translation="MGSSTISLSLPTFSSSSTNSFTQTKPSICSHHQLSRKSLPSSFF TSTTFLYNKTSARTKQVCTSFKIKCSAASSSSSSTLPAALLFDCDGVLVDTEKDGHRI SFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPDKAPKSEEERKEFIA SLHKRKTELFMALIENRLLPLRPGVAKLVDQALEKGVKVAVCSTSNEKAVSAVVSCLL GPERAEKIKIFAGDVVPRKKPDPAIYTLAANTLGVDPSSCVVVEDSAIGLAAAKAAGM TCVVTKSSYTADEDFLNADAVFDCIGDPPEERFDLAFCGSLLEKQYVG" gene 23087370..23093583 /locus_tag="TCM_014548" /note="dbxref CacaoGD:Thecc1EG014548" mRNA join(23087370..23087787,23088473..23088565, 23089318..23089462,23089710..23089911,23090029..23090107, 23090595..23090656,23090849..23090935,23091142..23091245, 23092015..23092100,23093332..23093583) /locus_tag="TCM_014548" /product="DNAse I-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10030.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10030.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09345t00001" mRNA join(23087370..23087787,23088473..23088565, 23089318..23089462,23089710..23089911,23090029..23090107, 23090595..23090935,23091142..23091245,23092015..23092351) /locus_tag="TCM_014548" /product="DNAse I-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10030.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10030.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b014056t1a3; inference alignment:Newbler:10:TSA:cgbaB_g09345t00001" mRNA join(23087370..23087787,23088473..23088565, 23089318..23089462,23089710..23089911,23090029..23090107, 23090595..23090656,23090849..23090935,23092015..23092351) /locus_tag="TCM_014548" /product="DNAse I-like superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10030.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10030.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b014056t1a2; inference alignment:Newbler:10:TSA:cgbaB_g09345t00001" mRNA join(23087370..23087787,23088477..23088565, 23089318..23089462,23089710..23089911,23090029..23090107, 23090595..23090656,23090849..23090935,23091142..23091245, 23092015..23092351) /locus_tag="TCM_014548" /product="DNAse I-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10030.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10030.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b014056t1a4; inference alignment:Newbler:10:TSA:cgbaB_g09345t00001" CDS join(23087566..23087787,23088473..23088565, 23089318..23089462,23089710..23089911,23090029..23090107, 23090595..23090656,23090849..23090935,23091142..23091245, 23092015..23092082) /locus_tag="TCM_014548" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNAse I-like superfamily protein isoform 1" /protein_id="EOY22352.1" /db_xref="Phytozome:POPTR_0015s10030.1" /db_xref="TAIR:AT3G48425.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XF07" /translation="MKRFFKPIEKEGSAKKPSLSPSKQGGEKGEEDIKKEPLKFVTWN ANSLLLRVKNNWPQFSDFISNLDPDIIAIQEVRMPAAGPKGAPKNPRELKDDTSSSRE EKQILLRALSSPPFENYHVWWSLADSKYAGTALLVKKCLQPVKVSFSLDKTVSKHEPD GRVILAEFETVRILNTYAPNNGWKEEENSFQRRRKWDKRLLDFVVQSSDKPLIWCGDL NVSHEDIDVTHPEFFSAAKMNGYVPPNKEDWGQPGFTLAERKRFGAILKEGRLVDAYR YLHKEKDMERGFSWSGHPIGKYRGKRMRIDYLIVSDKLKDRIAACEMHGQGIELEGFY GSDHCPVSLHLSEECKAAN" CDS join(23087566..23087787,23088473..23088565, 23089318..23089462,23089710..23089911,23090029..23090107, 23090595..23090656,23090849..23090935,23092015..23092030) /locus_tag="TCM_014548" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="DNAse I-like superfamily protein isoform 4" /protein_id="EOY22355.1" /db_xref="Phytozome:POPTR_0015s10030.1" /db_xref="TAIR:AT3G48425.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XF07" /translation="MKRFFKPIEKEGSAKKPSLSPSKQGGEKGEEDIKKEPLKFVTWN ANSLLLRVKNNWPQFSDFISNLDPDIIAIQEVRMPAAGPKGAPKNPRELKDDTSSSRE EKQILLRALSSPPFENYHVWWSLADSKYAGTALLVKKCLQPVKVSFSLDKTVSKHEPD GRVILAEFETVRILNTYAPNNGWKEEENSFQRRRKWDKRLLDFVVQSSDKPLIWCGDL NVSHEDIDVTHPEFFSAAKMNGYVPPNKEDWGQPGFTLAERKRFGAILKEGRLVDAYR YLHKEKDMERGFSWSGHPIGKFLWK" CDS join(23087566..23087787,23088473..23088565, 23089318..23089462,23089710..23089911,23090029..23090107, 23090595..23090759) /locus_tag="TCM_014548" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DNAse I-like superfamily protein isoform 3" /protein_id="EOY22354.1" /db_xref="Phytozome:POPTR_0015s10030.1" /db_xref="TAIR:AT3G48425.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XF07" /translation="MKRFFKPIEKEGSAKKPSLSPSKQGGEKGEEDIKKEPLKFVTWN ANSLLLRVKNNWPQFSDFISNLDPDIIAIQEVRMPAAGPKGAPKNPRELKDDTSSSRE EKQILLRALSSPPFENYHVWWSLADSKYAGTALLVKKCLQPVKVSFSLDKTVSKHEPD GRVILAEFETVRILNTYAPNNGWKEEENSFQRRRKWDKRLLDFVVQSSDKPLIWCGDL NVSHEDIDVTHPEFFSAAKMNGYVPPNKEDWGQPGFTLAERKRFGAILKECVISSDTP YFFGFNQPFICVEHKLKLMIMESLS" CDS join(23088482..23088565,23089318..23089462, 23089710..23089911,23090029..23090107,23090595..23090656, 23090849..23090935,23091142..23091245,23092015..23092082) /locus_tag="TCM_014548" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNAse I-like superfamily protein isoform 2" /protein_id="EOY22353.1" /db_xref="Phytozome:POPTR_0015s10030.1" /db_xref="TAIR:AT3G48425.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8BP44" /translation="MPAAGPKGAPKNPRELKDDTSSSREEKQILLRALSSPPFENYHV WWSLADSKYAGTALLVKKCLQPVKVSFSLDKTVSKHEPDGRVILAEFETVRILNTYAP NNGWKEEENSFQRRRKWDKRLLDFVVQSSDKPLIWCGDLNVSHEDIDVTHPEFFSAAK MNGYVPPNKEDWGQPGFTLAERKRFGAILKEGRLVDAYRYLHKEKDMERGFSWSGHPI GKYRGKRMRIDYLIVSDKLKDRIAACEMHGQGIELEGFYGSDHCPVSLHLSEECKAAN " mobile_element 23093175..23093237 /note="source:CACAO_M_S_E18487_F233_scaffold_3 1320 1380" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23095772..23106722 /locus_tag="TCM_014549" /note="dbxref CacaoGD:Thecc1EG014549" mRNA join(23095772..23097147,23098151..23098229, 23098592..23098659,23098735..23098885,23099527..23100224, 23100812..23101501,23103376..23106722) /locus_tag="TCM_014549" /product="Relative of early flowering 6, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09903" /inference="similar to AA sequence:Phytozome:POPTR_0015s10040.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc260t2" mRNA join(23096098..23097147,23098151..23098229, 23098592..23098659,23098735..23098885,23099527..23100224, 23100812..23101501,23103376..23105751,23105821..23106428) /locus_tag="TCM_014549" /product="Relative of early flowering 6, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene09903" /inference="similar to AA sequence:Phytozome:POPTR_0015s10040.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc259t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc260t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5235t2" mRNA join(23096098..23097147,23098151..23098229, 23098592..23098659,23098735..23098885,23099527..23100224, 23100812..23101501,23103376..23104996,23105448..23106428) /locus_tag="TCM_014549" /product="Relative of early flowering 6, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene09903" /inference="similar to AA sequence:Phytozome:POPTR_0012s09390.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc259t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc260t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5235t2" CDS join(23096271..23097147,23098151..23098229, 23098592..23098659,23098735..23098885,23099527..23100224, 23100812..23101501,23103376..23105751,23105821..23105825) /locus_tag="TCM_014549" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Relative of early flowering 6, putative isoform 2" /protein_id="EOY22357.1" /db_xref="Phytozome:POPTR_0015s10040.1" /db_xref="TAIR:AT3G48430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTM2" /translation="MAASSLSPEPSQEVFSWLKSLPLAPEYRPTLAEFQDPIAYIFKI EKEASQYGICKIIPPVPPAPKKTAIGNLNRSLLARAAANTSSDSKPAPTFTTRQQQIG FCPRKPRPVQKPVWQSGEYYTFQEFEAKAKNFERGYLKRYSRKGSLSALEVETLFWKA TVDKPFSVEYANDMPGSAFVPLSSKKSSGGGREAGEGVTVGETPWNMRAVSRAKGSLL RFMKDEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAF EEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRA YHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCSR VPMSINAKPKSSRLKDKKKSEGETLVKELFVQNLMQNNELLHILGKGSSVVLLPKSSS DISPCSDLRVASQIRINPRMSRGLCNYKDVVKLSKDLASDEIMVGGNEEIKGVKGFYS VKGKFASMYEGNRDSAFNGTDHLCRLPLQTLNMSAEGENAVQGDALSDQGLFSCVTCG ILCFSCIAVLQPTEQAARYLMSADCSFFNDWTVGSGVTRDGFTTTHGDVITSEQNSCT RWMNKRAPNALYDVPVQSVEDKFHMADQSNQVVEDTEKGGDTSALGLLASTYGNSSDS EEDHVEPNVTVSGDETNSANRSLERKFQYNGSGFSPGDANGSNNPSLLRLESEEEAPV HVDIKSTSPQAFDHTVEFETDNLASRRSIGLEDKFRDPITTSHANPSYSPATHGAEKM RFSKTMVPMENADIPFAPRSDEDSSRMHVFCLEHAVEVDQQLRQIGGVHVFLLCHPEY PKIEAEAKLVTEELGIDYPWNDILFGDATKEDEERIQSALDSEDAIPGNGDWAVKLGV NLFYSANLSRSTLYSKQMPYNYVIYSAFGRNSPGSSPTKLNVYGRRSGKQKKVVAGKW CGKVWMSNQVHPFLAQRDPEEQEQERGFHAWATSDENLERKPENVHKAETTKVAKKFN RKRKMRPEIASSKKVKCIETEGAVSDDSLDGGSLRQQQIFFRGKQPRLIQKEEAISYD LLEDDSLLQQRNLSRKKLAKFIEREGAESEDAEEEFTHQQHWRNLRGKQGKYIEEDDA VSGDSLDESSLKQYRRIPRSWQAKFREREDIVSEDELEEISHRLHRRIPRCRQIKSCE KNDAISDDSRADNSLKQYRRMPKGRQANFVERDDTMSDDASEDDSQHQLRRIPKGKQM KCMERDDAFSDDSLEDNLQQQHRIPRSKVAKFTDREDVVSFDSLKGSSHQQRRRVSRS QLTKFIEREDAVSSDSPDDSSLQQLRRIPRSKQTKILEREDAVSDDSLDDTSQQQLRK TPRSRQGKFIEREDAVSYDSLDENYHQPNRRTLRSRKKKAQTPRQIKQETPRNVKQGK RRTTKQVVSQQIKQETPRNRNTKIEQSARQCNSYGEDELEGGPSTRLRKRVRKPLKES ETKPKEKKQASKKKVKNASNVKTLAGHNTSKVRDEEAEYQCDMEGCTMSFGLKQELLL HKRNICPVKGCGKKFFSHKYLVQHRRVHLDDRPLKCPWKGCKMTFKWAWARTEHIRVH TGARPYVCAEEGCGQTFRFVSDFSRHKRKTGHSAKKG" CDS join(23096271..23097147,23098151..23098229, 23098592..23098659,23098735..23098885,23099527..23100224, 23100812..23101501,23103376..23105762) /locus_tag="TCM_014549" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Relative of early flowering 6, putative isoform 1" /protein_id="EOY22356.1" /db_xref="Phytozome:POPTR_0015s10040.1" /db_xref="TAIR:AT3G48430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTM2" /translation="MAASSLSPEPSQEVFSWLKSLPLAPEYRPTLAEFQDPIAYIFKI EKEASQYGICKIIPPVPPAPKKTAIGNLNRSLLARAAANTSSDSKPAPTFTTRQQQIG FCPRKPRPVQKPVWQSGEYYTFQEFEAKAKNFERGYLKRYSRKGSLSALEVETLFWKA TVDKPFSVEYANDMPGSAFVPLSSKKSSGGGREAGEGVTVGETPWNMRAVSRAKGSLL RFMKDEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAF EEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRA YHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCSR VPMSINAKPKSSRLKDKKKSEGETLVKELFVQNLMQNNELLHILGKGSSVVLLPKSSS DISPCSDLRVASQIRINPRMSRGLCNYKDVVKLSKDLASDEIMVGGNEEIKGVKGFYS VKGKFASMYEGNRDSAFNGTDHLCRLPLQTLNMSAEGENAVQGDALSDQGLFSCVTCG ILCFSCIAVLQPTEQAARYLMSADCSFFNDWTVGSGVTRDGFTTTHGDVITSEQNSCT RWMNKRAPNALYDVPVQSVEDKFHMADQSNQVVEDTEKGGDTSALGLLASTYGNSSDS EEDHVEPNVTVSGDETNSANRSLERKFQYNGSGFSPGDANGSNNPSLLRLESEEEAPV HVDIKSTSPQAFDHTVEFETDNLASRRSIGLEDKFRDPITTSHANPSYSPATHGAEKM RFSKTMVPMENADIPFAPRSDEDSSRMHVFCLEHAVEVDQQLRQIGGVHVFLLCHPEY PKIEAEAKLVTEELGIDYPWNDILFGDATKEDEERIQSALDSEDAIPGNGDWAVKLGV NLFYSANLSRSTLYSKQMPYNYVIYSAFGRNSPGSSPTKLNVYGRRSGKQKKVVAGKW CGKVWMSNQVHPFLAQRDPEEQEQERGFHAWATSDENLERKPENVHKAETTKVAKKFN RKRKMRPEIASSKKVKCIETEGAVSDDSLDGGSLRQQQIFFRGKQPRLIQKEEAISYD LLEDDSLLQQRNLSRKKLAKFIEREGAESEDAEEEFTHQQHWRNLRGKQGKYIEEDDA VSGDSLDESSLKQYRRIPRSWQAKFREREDIVSEDELEEISHRLHRRIPRCRQIKSCE KNDAISDDSRADNSLKQYRRMPKGRQANFVERDDTMSDDASEDDSQHQLRRIPKGKQM KCMERDDAFSDDSLEDNLQQQHRIPRSKVAKFTDREDVVSFDSLKGSSHQQRRRVSRS QLTKFIEREDAVSSDSPDDSSLQQLRRIPRSKQTKILEREDAVSDDSLDDTSQQQLRK TPRSRQGKFIEREDAVSYDSLDENYHQPNRRTLRSRKKKAQTPRQIKQETPRNVKQGK RRTTKQVVSQQIKQETPRNRNTKIEQSARQCNSYGEDELEGGPSTRLRKRVRKPLKES ETKPKEKKQASKKKVKNASNVKTLAGHNTSKVRDEEAEYQCDMEGCTMSFGLKQELLL HKRNICPVKGCGKKFFSHKYLVQHRRVHLDDRPLKCPWKGCKMTFKWAWARTEHIRVH TGARPYVCAEEGCGQTFRFVSDFSRHKRKTGHSAKKGRG" CDS join(23096271..23097147,23098151..23098229, 23098592..23098659,23098735..23098885,23099527..23100224, 23100812..23101501,23103376..23104996,23105448..23105451) /locus_tag="TCM_014549" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Relative of early flowering 6, putative isoform 3" /protein_id="EOY22358.1" /db_xref="Phytozome:POPTR_0012s09390.1" /db_xref="TAIR:AT3G48430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7LRW6" /translation="MAASSLSPEPSQEVFSWLKSLPLAPEYRPTLAEFQDPIAYIFKI EKEASQYGICKIIPPVPPAPKKTAIGNLNRSLLARAAANTSSDSKPAPTFTTRQQQIG FCPRKPRPVQKPVWQSGEYYTFQEFEAKAKNFERGYLKRYSRKGSLSALEVETLFWKA TVDKPFSVEYANDMPGSAFVPLSSKKSSGGGREAGEGVTVGETPWNMRAVSRAKGSLL RFMKDEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAF EEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRA YHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCSR VPMSINAKPKSSRLKDKKKSEGETLVKELFVQNLMQNNELLHILGKGSSVVLLPKSSS DISPCSDLRVASQIRINPRMSRGLCNYKDVVKLSKDLASDEIMVGGNEEIKGVKGFYS VKGKFASMYEGNRDSAFNGTDHLCRLPLQTLNMSAEGENAVQGDALSDQGLFSCVTCG ILCFSCIAVLQPTEQAARYLMSADCSFFNDWTVGSGVTRDGFTTTHGDVITSEQNSCT RWMNKRAPNALYDVPVQSVEDKFHMADQSNQVVEDTEKGGDTSALGLLASTYGNSSDS EEDHVEPNVTVSGDETNSANRSLERKFQYNGSGFSPGDANGSNNPSLLRLESEEEAPV HVDIKSTSPQAFDHTVEFETDNLASRRSIGLEDKFRDPITTSHANPSYSPATHGAEKM RFSKTMVPMENADIPFAPRSDEDSSRMHVFCLEHAVEVDQQLRQIGGVHVFLLCHPEY PKIEAEAKLVTEELGIDYPWNDILFGDATKEDEERIQSALDSEDAIPGNGDWAVKLGV NLFYSANLSRSTLYSKQMPYNYVIYSAFGRNSPGSSPTKLNVYGRRSGKQKKVVAGKW CGKVWMSNQVHPFLAQRDPEEQEQERGFHAWATSDENLERKPENVHKAETTKVAKKFN RKRKMRPEIASSKKVKCIETEGAVSDDSLDGGSLRQQQIFFRGKQPRLIQKEEAISYD LLEDDSLLQQRNLSRKKLAKFIEREGAESEDAEEEFTHQQHWRNLRGKQGKYIEEDDA VSGDSLDESSLKQYRRIPRSWQAKFREREDIVSEDELEEISHRLHRRIPRCRQIKSCE KNDAISDDSRADNSLKQYRRMPKGRQANFVERDDTMSDDASEDDSQHQLRRIPKGKQM KCMERDDAFSDDSLEDNLQQQHRIPRSKVAKFTDREDVVSFDSLKGSSHQQRRRVSRS QLTKFIEREDAVSSDSPDDSSLQQLRRIPRSKQTKILEREDAVSDDSLDDTSQQQLRK TPRSRQGKFIEREDAVS" mRNA join(23099734..23100224,23100812..23101501, 23103376..23105752,23105826..23105915) /locus_tag="TCM_014549" /product="Relative of early flowering 6, putative isoform 4" /inference="alignment:exonerate-protein:2:frave:gene09903" /inference="similar to AA sequence:Phytozome:POPTR_0015s10040.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5235t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5235t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc260t2" CDS join(23099759..23100224,23100812..23101501, 23103376..23105752,23105826..23105883) /locus_tag="TCM_014549" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Relative of early flowering 6, putative isoform 4" /protein_id="EOY22359.1" /db_xref="Phytozome:POPTR_0015s10040.1" /db_xref="TAIR:AT3G48430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3K5" /translation="MSRGLCNYKDVVKLSKDLASDEIMVGGNEEIKGVKGFYSVKGKF ASMYEGNRDSAFNGTDHLCRLPLQTLNMSAEGENAVQGDALSDQGLFSCVTCGILCFS CIAVLQPTEQAARYLMSADCSFFNDWTVGSGVTRDGFTTTHGDVITSEQNSCTRWMNK RAPNALYDVPVQSVEDKFHMADQSNQVVEDTEKGGDTSALGLLASTYGNSSDSEEDHV EPNVTVSGDETNSANRSLERKFQYNGSGFSPGDANGSNNPSLLRLESEEEAPVHVDIK STSPQAFDHTVEFETDNLASRRSIGLEDKFRDPITTSHANPSYSPATHGAEKMRFSKT MVPMENADIPFAPRSDEDSSRMHVFCLEHAVEVDQQLRQIGGVHVFLLCHPEYPKIEA EAKLVTEELGIDYPWNDILFGDATKEDEERIQSALDSEDAIPGNGDWAVKLGVNLFYS ANLSRSTLYSKQMPYNYVIYSAFGRNSPGSSPTKLNVYGRRSGKQKKVVAGKWCGKVW MSNQVHPFLAQRDPEEQEQERGFHAWATSDENLERKPENVHKAETTKVAKKFNRKRKM RPEIASSKKVKCIETEGAVSDDSLDGGSLRQQQIFFRGKQPRLIQKEEAISYDLLEDD SLLQQRNLSRKKLAKFIEREGAESEDAEEEFTHQQHWRNLRGKQGKYIEEDDAVSGDS LDESSLKQYRRIPRSWQAKFREREDIVSEDELEEISHRLHRRIPRCRQIKSCEKNDAI SDDSRADNSLKQYRRMPKGRQANFVERDDTMSDDASEDDSQHQLRRIPKGKQMKCMER DDAFSDDSLEDNLQQQHRIPRSKVAKFTDREDVVSFDSLKGSSHQQRRRVSRSQLTKF IEREDAVSSDSPDDSSLQQLRRIPRSKQTKILEREDAVSDDSLDDTSQQQLRKTPRSR QGKFIEREDAVSYDSLDENYHQPNRRTLRSRKKKAQTPRQIKQETPRNVKQGKRRTTK QVVSQQIKQETPRNRNTKIEQSARQCNSYGEDELEGGPSTRLRKRVRKPLKESETKPK EKKQASKKKVKNASNVKTLAGHNTSKVRDEEAEYQCDMEGCTMSFGLKQELLLHKRNI CPVKGCGKKFFSHKYLVQHRRVHLDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARP YVCAEEGCGQTFRFVSDFSRHKRKTGHSAKKGLGSTKGLEFPHCCHSGNC" gene 23106612..23111946 /locus_tag="TCM_014550" /note="dbxref CacaoGD:Thecc1EG014550" mRNA join(23106612..23106809,23106968..23107472, 23108039..23108104,23108581..23108700,23108879..23109151, 23110208..23110477,23110969..23111946) /locus_tag="TCM_014550" /product="Zinc finger C-x8-C-x5-C-x3-H type family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g13580.1" /inference="similar to AA sequence:Phytozome:Glyma17g13580.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8743t2" CDS join(23106760..23106809,23106968..23107472, 23108039..23108104,23108581..23108700,23108879..23109151, 23110208..23110477,23110969..23111172) /locus_tag="TCM_014550" /codon_start=1 /product="Zinc finger C-x8-C-x5-C-x3-H type family protein, putative" /protein_id="EOY22360.1" /db_xref="Phytozome:Glyma17g13580.1" /db_xref="TAIR:AT3G48440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3K6" /translation="MRHYYFFQVEIYSCNKWVLKCGLTMSQSEETPISDSTPTDSALH LGLHSLDPDPSPNPDPSPSDLNHSAQETDHDQSNLEQQLQNLDLKEEEGEEEEGDEEA EKKDDRDRESDNEADVDAAGDDEDEVEEKNEYEDDDENVTNEGRRSHYPVRPEAEDCA YYMKTGLCKFGSNCKFNHPVRRKNQAVKEKVKEKDESTEKPSQTECKYYLRTGGCKFG KACRYNHSRAKTAVAPILELNFLGLPIRPGEKECPYYMRNGSCKYGANCRFNHPDPTT AGACDPPSGYGNGGPVSSQAASQVNIASWSSPRTLNETPYMPMMFSPTQGVPPPNPEW NGYQTTVYAPERNLHPTPAYVMNNPSTETAVYTHHQPQMLVDEFPVRPGQPECSYFMK TGDCKFKSNCKYHHPKNRVAKPSPCTLSDKGLPLRPDQSICSHYSRYGICKFGPACKF DHSVQAAPSVVSGLDQPLPFSNSAATEESGIAGSNGTDTAVQQSV" gene complement(23111988..23113395) /locus_tag="TCM_014551" /note="dbxref CacaoGD:Thecc1EG014551" mRNA complement(join(23111988..23112426,23112529..23112714, 23113230..23113395)) /locus_tag="TCM_014551" /product="RPM1-interacting protein 4 family protein, putative" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5329t1" CDS complement(join(23112397..23112426,23112529..23112714, 23113230..23113235)) /locus_tag="TCM_014551" /codon_start=1 /product="RPM1-interacting protein 4 family protein, putative" /protein_id="EOY22361.1" /translation="MAQERGRPLPKFGEWDVNNPATAEGFTVIFNKARHEKKTRGSAG TIMSPTTDKIENVTSPSPRKTKWFCCVRV" gene complement(23113335..23144010) /locus_tag="TCM_014552" /note="dbxref CacaoGD:Thecc1EG014552" mRNA complement(join(23113335..23114520,23114867..23115049, 23115185..23115235,23117377..23117479,23117634..23117792, 23117955..23118043,23118139..23118252,23118486..23118644, 23119783..23119830,23119926..23120102,23120211..23120263, 23120844..23120956,23121936..23122019,23122103..23122218, 23123240..23123359,23124379..23124490,23124887..23125058, 23125144..23125212,23125369..23125500,23127311..23127420, 23127522..23127682,23127765..23127855,23127954..23128048, 23128487..23128604,23128728..23128888,23128983..23129064, 23129161..23129258,23130084..23130111,23132642..23132727, 23132827..23132913,23133224..23133273,23133957..23134038, 23134166..23134226,23134693..23134745,23134838..23135024, 23135130..23135253,23135425..23135527,23135623..23135715, 23136830..23136908,23137027..23137103,23137468..23137596, 23138092..23138209,23138312..23138409,23139177..23139266, 23140188..23140313,23140547..23140657,23140984..23141095, 23141564..23141733,23142494..23142591,23143375..23144010)) /locus_tag="TCM_014552" /product="Glucan synthase-like 8 isoform 3" /inference="alignment:exonerate-protein:2:frave:gene09912" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040336t1" /inference="similar to AA sequence:ricco:30147.m013812" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b014060t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5509t5" mRNA complement(join(23113335..23114520,23114867..23115049, 23115185..23115235,23116701..23116820,23117377..23117479, 23117634..23117792,23117955..23118043,23118139..23118252, 23118486..23118644,23119783..23119830,23119926..23120102, 23120211..23120263,23120844..23120956,23121936..23122019, 23122103..23122218,23123240..23123359,23124379..23124490, 23124887..23125058,23125144..23125212,23125369..23125500, 23127311..23127420,23127522..23127682,23127765..23127855, 23127954..23128048,23128487..23128604,23128728..23128888, 23128983..23129064,23129161..23129258,23130084..23130111, 23132642..23132727,23132827..23132913,23133224..23133273, 23133957..23134038,23134166..23134226,23134693..23134745, 23134838..23135024,23135130..23135253,23135425..23135527, 23135623..23135715,23136830..23136908,23137027..23137103, 23137468..23137596,23138092..23138209,23138312..23138409, 23139177..23139266,23140188..23140313,23140547..23140657, 23140984..23141095,23141564..23141733,23142494..23142591, 23143375..23143845)) /locus_tag="TCM_014552" /product="Glucan synthase-like 8 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09912" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040336t1" /inference="similar to AA sequence:ricco:30147.m013812" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5509t5" mRNA complement(join(23113881..23114520,23114867..23115049, 23115185..23115235,23116701..23116820,23117377..23117479, 23117634..23117792,23117955..23118043,23118139..23118252, 23118486..23118644,23119783..23119830,23119926..23120105, 23120211..23120263,23120844..23120956,23121936..23122019, 23122103..23122218,23123240..23123359,23124379..23124490, 23124887..23125058,23125144..23125212,23125369..23125500, 23127311..23127420,23127522..23127682,23127765..23127855, 23127954..23128048,23128487..23128604,23128728..23128888, 23128983..23129064,23129161..23129258,23130084..23130111, 23132642..23132727,23132827..23132913,23133224..23133273, 23133957..23134038,23134166..23134226,23134693..23134745, 23134838..23135024,23135130..23135253,23135425..23135527, 23135623..23135715,23136830..23136908,23137027..23137103, 23137468..23137596,23138092..23138209,23138312..23138409, 23139177..23139266,23140188..23140313,23140547..23140657, 23140984..23141095,23141564..23141733,23142494..23142591, 23143375..23144010)) /locus_tag="TCM_014552" /product="Glucan synthase-like 8 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene09912" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040336t1" /inference="similar to AA sequence:ricco:30147.m013812" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5509t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5509t5; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc556t11" CDS complement(join(23114284..23114520,23114867..23115049, 23115185..23115235,23117377..23117479,23117634..23117792, 23117955..23118043,23118139..23118252,23118486..23118644, 23119783..23119830,23119926..23120102,23120211..23120263, 23120844..23120956,23121936..23122019,23122103..23122218, 23123240..23123359,23124379..23124490,23124887..23125058, 23125144..23125212,23125369..23125500,23127311..23127420, 23127522..23127682,23127765..23127855,23127954..23128048, 23128487..23128604,23128728..23128888,23128983..23129064, 23129161..23129258,23130084..23130111,23132642..23132727, 23132827..23132913,23133224..23133273,23133957..23134038, 23134166..23134226,23134693..23134745,23134838..23135024, 23135130..23135253,23135425..23135527,23135623..23135715, 23136830..23136908,23137027..23137103,23137468..23137596, 23138092..23138209,23138312..23138409,23139177..23139266, 23140188..23140313,23140547..23140657,23140984..23141095, 23141564..23141733,23142494..23142591,23143375..23143588)) /locus_tag="TCM_014552" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m013812; paralog of Thecc1EG040336t1" /codon_start=1 /product="Glucan synthase-like 8 isoform 3" /protein_id="EOY22364.1" /db_xref="TAIR:AT2G36850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7L640" /translation="MARVFRNWERLVRATLDREQLRNVGQGHERTPSGIAGAVPLPPS LGRATNIDAILQAADEIQVEDPNIARILCEQAYGMAQNLDPNSEGRGVLQFKTGLMSV IKQKLAKRDGGRIDRNRDIEHLWEFYQLYKRRHRVDDIQREEQRWRESGTFSTSVGVY GALGMKKVFATLRALVEVMEALSKDAEPDGVGRLIKEELRRIRNADATISGELMPYNI VPLEAPSFTNAIGIFPEVRGAISAIRYTEHFPRLPSNFEISVQRDPDMFDLLEYVFGF QKDNVRNQRENVVLTIANAQSRLGIPVQADPKIDEKAINEVFLKVLDNYIKWCKYLRI RLAWNSLEAINRDRKLFLVSLYFLIWGEAANVRFLPECICYIFHHMAKELDAILDHGE ANPASSCTAEGGYVSFLEQIICPIYDTMAAEAVRNGNGKAAHSSWRNYDDFNEYFWSP ACFELNWPMRRDSPFLMKPKKWKRTGKSTFVEHRTFLHLYRSFHRLWIFLVLMFQALT IIAFRRGHINLDTFKILLSVGPTFAIMNFIESCLDVLLMFGAYTTARGMAISRLVIRF FWCGLASVFVTYVYVKVLEERNDRNSNSFYFRIYILVLGVYAALRVVLGLLLKFPACH ALSEMSDQSFFQFFKWIYQERYYVGRGLYERMSDYFRYVLFWLVIFLCKFTFAYFLQI RPLVSPTNAILDLPDLPYSWHDLVSKNNNNALTLASLWGPVIAIYIMDIHIWYTLLSA IIGGVMGARARLGEIRSTEMMHKRFESFPEEFAKNLVSPQTKRMPFERQAPEVSQETN KTYAALFSPFWNEIIKSLREEDYISNREMDLLLVPSNRGSLKLVQWPLFLLSSKILLA IDLAIDCKDTQADLWNRICKDEYMAYAVQECYYSIEKILHSLVDGEGRLWVERIYREI NNSISEGSLVITLVLKKLPLVLQKLTALLGLLRNEKPVEKGAANAVYQLYDSVTHYLL SDDLREQLDTWNILARARNEGRLFSRIEWPKDPEIREQVKRLYLLLTVKESAANIPKN LEARRRLEFFSNSLFMDMPSARPVCEMIPFCVFTPYYSETVLYSSKDLREENEDGIST LFYLQKIFPDEWENYLERVNEGKSTGNVEAQESTSELELRFWASYRGQTLARTVRGMM YYRRALMLQSYLERRSLGVDDYSQADSLTIEGFELSPEARAQADIKFTYVVSCQIYGQ QKQNKKAEAVDIALLLQRNEALRVAFIHAEENVGAEGKREFYSKLVKADINGKDQEVY SIKLPGDPKLGEGKPENQNHAIIFTRGEAIQTIDMNQDNYLEEAMKMRNLLEEFRGNH GLRPPTILGVREHVFTGSVSSLAWFMSNQETSFVTLGQRVLASPLKVRMHYGHPDVFD RIFHITRGGISKASRVINISEDIYAGFNSTLRQGNITHHEYIQVGKGRDVGLNQIALF EGKVAGGNGEQVLSRDVYRLGQLFDFFRMLSFFFTTVGYYVCTMMTVLTVYIFLYGRV YLALSGLDEAIAKQARMSGNTALDAALNAQFLVQIGVFTAVPMIMGFILEMGLLKAVL SFITMQLQLCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYS RSHFVKALEVALLLIVYIAYGYTEGGAVSFVLLTLSSWFLVISWLFAPYVFNPSGFEW QKTVEDFDDWTSWLLYKGGVGVKGDDSWESWWDEEQIYGFSWVVLVGFVFLFKIFTYS PKKSTDFQLVMRFMQGVISIGLVAALCLVVAFTDLSIADLFASILAFIPTGWTILCLA ITWKKVVRSLGMWDSVREFARFYDAGMGAFIFAPLAVLSWFPFISTFQSRLLFNQAFS RGLEISLILAGNKANAET" CDS complement(join(23114284..23114520,23114867..23115049, 23115185..23115235,23116701..23116820,23117377..23117479, 23117634..23117792,23117955..23118043,23118139..23118252, 23118486..23118644,23119783..23119830,23119926..23120102, 23120211..23120263,23120844..23120956,23121936..23122019, 23122103..23122218,23123240..23123359,23124379..23124490, 23124887..23125058,23125144..23125212,23125369..23125500, 23127311..23127420,23127522..23127682,23127765..23127855, 23127954..23128048,23128487..23128604,23128728..23128888, 23128983..23129064,23129161..23129258,23130084..23130111, 23132642..23132727,23132827..23132913,23133224..23133273, 23133957..23134038,23134166..23134226,23134693..23134745, 23134838..23135024,23135130..23135253,23135425..23135527, 23135623..23135715,23136830..23136908,23137027..23137103, 23137468..23137596,23138092..23138209,23138312..23138409, 23139177..23139266,23140188..23140313,23140547..23140657, 23140984..23141095,23141564..23141733,23142494..23142591, 23143375..23143588)) /locus_tag="TCM_014552" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013812; paralog of Thecc1EG040336t1" /codon_start=1 /product="Glucan synthase-like 8 isoform 1" /protein_id="EOY22362.1" /db_xref="TAIR:AT2G36850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7LJ83" /translation="MARVFRNWERLVRATLDREQLRNVGQGHERTPSGIAGAVPLPPS LGRATNIDAILQAADEIQVEDPNIARILCEQAYGMAQNLDPNSEGRGVLQFKTGLMSV IKQKLAKRDGGRIDRNRDIEHLWEFYQLYKRRHRVDDIQREEQRWRESGTFSTSVGVY GALGMKKVFATLRALVEVMEALSKDAEPDGVGRLIKEELRRIRNADATISGELMPYNI VPLEAPSFTNAIGIFPEVRGAISAIRYTEHFPRLPSNFEISVQRDPDMFDLLEYVFGF QKDNVRNQRENVVLTIANAQSRLGIPVQADPKIDEKAINEVFLKVLDNYIKWCKYLRI RLAWNSLEAINRDRKLFLVSLYFLIWGEAANVRFLPECICYIFHHMAKELDAILDHGE ANPASSCTAEGGYVSFLEQIICPIYDTMAAEAVRNGNGKAAHSSWRNYDDFNEYFWSP ACFELNWPMRRDSPFLMKPKKWKRTGKSTFVEHRTFLHLYRSFHRLWIFLVLMFQALT IIAFRRGHINLDTFKILLSVGPTFAIMNFIESCLDVLLMFGAYTTARGMAISRLVIRF FWCGLASVFVTYVYVKVLEERNDRNSNSFYFRIYILVLGVYAALRVVLGLLLKFPACH ALSEMSDQSFFQFFKWIYQERYYVGRGLYERMSDYFRYVLFWLVIFLCKFTFAYFLQI RPLVSPTNAILDLPDLPYSWHDLVSKNNNNALTLASLWGPVIAIYIMDIHIWYTLLSA IIGGVMGARARLGEIRSTEMMHKRFESFPEEFAKNLVSPQTKRMPFERQAPEVSQETN KTYAALFSPFWNEIIKSLREEDYISNREMDLLLVPSNRGSLKLVQWPLFLLSSKILLA IDLAIDCKDTQADLWNRICKDEYMAYAVQECYYSIEKILHSLVDGEGRLWVERIYREI NNSISEGSLVITLVLKKLPLVLQKLTALLGLLRNEKPVEKGAANAVYQLYDSVTHYLL SDDLREQLDTWNILARARNEGRLFSRIEWPKDPEIREQVKRLYLLLTVKESAANIPKN LEARRRLEFFSNSLFMDMPSARPVCEMIPFCVFTPYYSETVLYSSKDLREENEDGIST LFYLQKIFPDEWENYLERVNEGKSTGNVEAQESTSELELRFWASYRGQTLARTVRGMM YYRRALMLQSYLERRSLGVDDYSQADSLTIEGFELSPEARAQADIKFTYVVSCQIYGQ QKQNKKAEAVDIALLLQRNEALRVAFIHAEENVGAEGKREFYSKLVKADINGKDQEVY SIKLPGDPKLGEGKPENQNHAIIFTRGEAIQTIDMNQDNYLEEAMKMRNLLEEFRGNH GLRPPTILGVREHVFTGSVSSLAWFMSNQETSFVTLGQRVLASPLKVRMHYGHPDVFD RIFHITRGGISKASRVINISEDIYAGFNSTLRQGNITHHEYIQVGKGRDVGLNQIALF EGKVAGGNGEQVLSRDVYRLGQLFDFFRMLSFFFTTVGYYVCTMMTVLTVYIFLYGRV YLALSGLDEAIAKQARMSGNTALDAALNAQFLVQIGVFTAVPMIMGFILEMGLLKAVL SFITMQLQLCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYS RSHFVKALEVALLLIVYIAYGYTEGGAVSFVLLTLSSWFLVISWLFAPYVFNPSGFEW QKTVEDFDDWTSWLLYKGGVGVKGDDSWESWWDEEQIHIQTLRGRILETILSLRFLVF QYGIVYKLHLTGSNTSLAIYGFSWVVLVGFVFLFKIFTYSPKKSTDFQLVMRFMQGVI SIGLVAALCLVVAFTDLSIADLFASILAFIPTGWTILCLAITWKKVVRSLGMWDSVRE FARFYDAGMGAFIFAPLAVLSWFPFISTFQSRLLFNQAFSRGLEISLILAGNKANAET " CDS complement(join(23114284..23114520,23114867..23115049, 23115185..23115235,23116701..23116820,23117377..23117479, 23117634..23117792,23117955..23118043,23118139..23118252, 23118486..23118644,23119783..23119830,23119926..23120105, 23120211..23120263,23120844..23120956,23121936..23122019, 23122103..23122218,23123240..23123359,23124379..23124490, 23124887..23125058,23125144..23125212,23125369..23125500, 23127311..23127420,23127522..23127682,23127765..23127855, 23127954..23128048,23128487..23128604,23128728..23128888, 23128983..23129064,23129161..23129258,23130084..23130111, 23132642..23132727,23132827..23132913,23133224..23133273, 23133957..23134038,23134166..23134226,23134693..23134745, 23134838..23135024,23135130..23135253,23135425..23135527, 23135623..23135715,23136830..23136908,23137027..23137103, 23137468..23137596,23138092..23138209,23138312..23138409, 23139177..23139266,23140188..23140313,23140547..23140657, 23140984..23141095,23141564..23141733,23142494..23142591, 23143375..23143588)) /locus_tag="TCM_014552" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013812; paralog of Thecc1EG040336t1" /codon_start=1 /product="Glucan synthase-like 8 isoform 2" /protein_id="EOY22363.1" /db_xref="TAIR:AT2G36850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7LJ83" /translation="MARVFRNWERLVRATLDREQLRNVGQGHERTPSGIAGAVPLPPS LGRATNIDAILQAADEIQVEDPNIARILCEQAYGMAQNLDPNSEGRGVLQFKTGLMSV IKQKLAKRDGGRIDRNRDIEHLWEFYQLYKRRHRVDDIQREEQRWRESGTFSTSVGVY GALGMKKVFATLRALVEVMEALSKDAEPDGVGRLIKEELRRIRNADATISGELMPYNI VPLEAPSFTNAIGIFPEVRGAISAIRYTEHFPRLPSNFEISVQRDPDMFDLLEYVFGF QKDNVRNQRENVVLTIANAQSRLGIPVQADPKIDEKAINEVFLKVLDNYIKWCKYLRI RLAWNSLEAINRDRKLFLVSLYFLIWGEAANVRFLPECICYIFHHMAKELDAILDHGE ANPASSCTAEGGYVSFLEQIICPIYDTMAAEAVRNGNGKAAHSSWRNYDDFNEYFWSP ACFELNWPMRRDSPFLMKPKKWKRTGKSTFVEHRTFLHLYRSFHRLWIFLVLMFQALT IIAFRRGHINLDTFKILLSVGPTFAIMNFIESCLDVLLMFGAYTTARGMAISRLVIRF FWCGLASVFVTYVYVKVLEERNDRNSNSFYFRIYILVLGVYAALRVVLGLLLKFPACH ALSEMSDQSFFQFFKWIYQERYYVGRGLYERMSDYFRYVLFWLVIFLCKFTFAYFLQI RPLVSPTNAILDLPDLPYSWHDLVSKNNNNALTLASLWGPVIAIYIMDIHIWYTLLSA IIGGVMGARARLGEIRSTEMMHKRFESFPEEFAKNLVSPQTKRMPFERQAPEVSQETN KTYAALFSPFWNEIIKSLREEDYISNREMDLLLVPSNRGSLKLVQWPLFLLSSKILLA IDLAIDCKDTQADLWNRICKDEYMAYAVQECYYSIEKILHSLVDGEGRLWVERIYREI NNSISEGSLVITLVLKKLPLVLQKLTALLGLLRNEKPVEKGAANAVYQLYDSVTHYLL SDDLREQLDTWNILARARNEGRLFSRIEWPKDPEIREQVKRLYLLLTVKESAANIPKN LEARRRLEFFSNSLFMDMPSARPVCEMIPFCVFTPYYSETVLYSSKDLREENEDGIST LFYLQKIFPDEWENYLERVNEGKSTGNVEAQESTSELELRFWASYRGQTLARTVRGMM YYRRALMLQSYLERRSLGVDDYSQADSLTIEGFELSPEARAQADIKFTYVVSCQIYGQ QKQNKKAEAVDIALLLQRNEALRVAFIHAEENVGAEGKREFYSKLVKADINGKDQEVY SIKLPGDPKLGEGKPENQNHAIIFTRGEAIQTIDMNQDNYLEEAMKMRNLLEEFRGNH GLRPPTILGVREHVFTGSVSSLAWFMSNQETSFVTLGQRVLASPLKVRMHYGHPDVFD RIFHITRGGISKASRVINISEDIYAGFNSTLRQGNITHHEYIQQVGKGRDVGLNQIAL FEGKVAGGNGEQVLSRDVYRLGQLFDFFRMLSFFFTTVGYYVCTMMTVLTVYIFLYGR VYLALSGLDEAIAKQARMSGNTALDAALNAQFLVQIGVFTAVPMIMGFILEMGLLKAV LSFITMQLQLCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLY SRSHFVKALEVALLLIVYIAYGYTEGGAVSFVLLTLSSWFLVISWLFAPYVFNPSGFE WQKTVEDFDDWTSWLLYKGGVGVKGDDSWESWWDEEQIHIQTLRGRILETILSLRFLV FQYGIVYKLHLTGSNTSLAIYGFSWVVLVGFVFLFKIFTYSPKKSTDFQLVMRFMQGV ISIGLVAALCLVVAFTDLSIADLFASILAFIPTGWTILCLAITWKKVVRSLGMWDSVR EFARFYDAGMGAFIFAPLAVLSWFPFISTFQSRLLFNQAFSRGLEISLILAGNKANAE T" mobile_element 23125649..23125716 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3888 3955" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23144187..23144800 /locus_tag="TCM_014553" /note="dbxref CacaoGD:Thecc1EG014553" mRNA 23144187..23144800 /locus_tag="TCM_014553" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.74 coverage" CDS 23144308..23144589 /locus_tag="TCM_014553" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22365.1" /translation="MHHQNFPLSSQTCLSFPFPSSGKYILCIHRVTGQSWACPSCVCR SILPARKVLEVGMWWRIGVSSKVRMLVIGFDDSFVEAPCQTLHVTHCHC" mobile_element complement(23145279..23145349) /note="source:INTACT639F_F363_scaffold_5-int 8156 8240" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23148324..23149592 /note="source:scaffold_5_CACTA_0615 168 1421" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23149690..23150685) /note="source:INTACT135F_F90_scaffold_2-int 12841 13997" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23150657..23150850 /note="source:scaffold_5_CACTA_0615 1419 1612" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23152841..23154366 /note="source:CACAO_M_E22913_F17_scaffold_3 1 1526" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23159679..23160471 /note="source:CACAO_M_S_E52027_F3_scaffold_5 4392 5176" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23160581..23161390 /note="source:INTACT117_F146_scaffold_2-int 1335 2402" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23161391..23162258) /note="source:scaffold_5_CACTA_0586 15354 16218" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23161719..23162299) /note="source:INTACT1330F_F382_scaffold_8-int 12076 12645" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23162259..23174347 /note="source:INTACT117_F146_scaffold_2-int 2403 18356" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23169382..23174291) /locus_tag="TCM_014557" /note="dbxref CacaoGD:Thecc1EG014557" mRNA complement(join(23169382..23170569,23170728..23171045, 23171166..23171522,23173752..23174291)) /locus_tag="TCM_014557" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026472t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(join(23170296..23170569,23170728..23171045, 23171166..23171413)) /locus_tag="TCM_014557" /note="paralog of Thecc1EG026472t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22366.1" /translation="MASAQQSEGDCLSKDHFSSLPDRVHIDFKQNDFTDLLDIWDRWR VTTRASFDKKYGHIARLLKVQIDEQLLKAIVQFWDSSYRRKLAKMMGITPTEVDQNLR KKGDNECIPWSFLRSYIMKHQDTEQGQLVMALGIYGLVIFPKVLGHIEVEIIDFFEQV INKANPSPSILAETLRSLNYCRRKGKDELFQKLMSVEVTWRAPWMPHHPILYKCKNEP WVPLMGPWGAISYASIMVRRQFGLEQFVPMTHRLNTLEFAYGESGFLKRIEEIARAWK KIS" gene 23174886..23179148 /locus_tag="TCM_014558" /note="dbxref CacaoGD:Thecc1EG014558" mRNA join(23174886..23174981,23177481..23178208, 23178321..23179148) /locus_tag="TCM_014558" /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10140.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10140.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08883t00001" CDS join(23177567..23178208,23178321..23178824) /locus_tag="TCM_014558" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /protein_id="EOY22367.1" /db_xref="Phytozome:POPTR_0015s10140.1" /db_xref="TAIR:AT3G48460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF45" /translation="MATLSILHFSLQKILITVNTIFLLSSSLPSASAITPFKKIYAFG DSFTDTGNTGSLTGPTGFVHVSNPPYGTTFFHHPTNRYSDGRLVIDFVAQSLSLPFLP PYRKSKGNTTYGVNFAVAGSTAINHAFFAKNNLSLDITPESIQTQLIWFDKYLESQGC KGPESGPECKEGLDDALFWIGEIGVNDYAYTLGSTVSDDTIRKLAIYSLTEFLQSLLK KGAKYVVVQALPTTGCLPLAMTLAPSDDRDDIGCVKSVNNQSYTHNLVLQAKLSDLRQ QFPQAVIAYADYWNAYRTVMKNPEKYGFKESFKACCGTGDPYNFDVFNTCGTPSVTAC SNPSEHINWDGVHLTEAMYKVVADMFLNGNLSNPPFKSLLERKQQKP" gene complement(23179473..23180387) /locus_tag="TCM_014559" /note="dbxref CacaoGD:Thecc1EG014559" mRNA complement(join(23179473..23179840,23180091..23180167, 23180274..23180387)) /locus_tag="TCM_014559" /product="Uncharacterized protein" /note="quality class is weak, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage" CDS complement(join(23179696..23179840,23180091..23180134)) /locus_tag="TCM_014559" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22368.1" /translation="MATLDKLPNLHMLSRASQPDRKHEKQGDDAEKIFSCILGSVRSK LSDLSEEDAARNASLCKN" mobile_element complement(23180717..23181863) /note="source:INTACT639F_F363_scaffold_5-int 7466 8570" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23182127..23182249 /note="source:CACAO_M_E72142_F322_scaffold_10 682 798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23182184..23182263) /note="source:CACAO_M_E49145_F369_scaffold_6 1213 1280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23182192..23182287) /note="source:scaffold_6_CACTA_0706 1397 1488" /mobile_element_type="transposon:TIR/CACTA" gene complement(23183203..23186131) /locus_tag="TCM_014560" /note="dbxref CacaoGD:Thecc1EG014560" mRNA complement(join(23183203..23183592,23183715..23183949, 23184692..23184758,23184950..23185112,23185570..23186131)) /locus_tag="TCM_014560" /product="RING/U-box superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s09480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010694t1" /inference="similar to AA sequence:ricco:30147.m013808" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5151t2" CDS complement(join(23183382..23183592,23183715..23183949, 23184692..23184758,23184950..23185112,23185570..23185655)) /locus_tag="TCM_014560" /note="dbxref ricco:30147.m013808; paralog of Thecc1EG010694t1" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY22369.1" /db_xref="TAIR:AT1G24440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SAF3" /translation="MDYFELSASSSYQDYLKVLEADVQHANMLAASIPRAKGGACLQM KLVYNHLAPIFLVFLQWLDCSCSCLLSSYVNLFHIVVYQVCSDGRPSISSCRRKATIR EFYCVILPSLQRLHGDLSELDVTPGEDHCFEMVVRKKLDDKRKVTDMELEREDECGIC LEPCNKIVLPNCCHAMCINCYRDWSIRSESCPFCRGSLKRVTSGDLWVLTRSTEVVET QTVLKEDMLRLHLYINRLPKDMPDALFLMYYEYLI" gene complement(23184800..23189056) /locus_tag="TCM_014561" /note="dbxref CacaoGD:Thecc1EG014561" mRNA complement(join(23184800..23185198,23187305..23189056)) /locus_tag="TCM_014561" /product="Xanthine/uracil permease family protein" /inference="alignment:exonerate-protein:2:frave:gene09918" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019735t1" /inference="similar to AA sequence:ricco:30147.m013806" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage" CDS complement(23187367..23189004) /locus_tag="TCM_014561" /note="dbxref ricco:30147.m013806; paralog of Thecc1EG019735t1" /codon_start=1 /product="Xanthine/uracil permease family protein" /protein_id="EOY22370.1" /db_xref="TAIR:AT5G50300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84MA8" /translation="MGGELCGRMGIGLCARLARSWRKMEIALNDTVSKSVVGKYFKLE ARKSCFTKELRAGTATFLTMAYIITVNATIIADSGGTCSAADCSAPVNQTASPDCMFK PNAGYENCLSKTKSDLVVATVLSAMIGSFAMGILANLPLGLAPGMGPNAYLAYNLVGF HGSGSLSYQTALAVVLVEGCAFLAIAALGLRAKLARLIPQPVRLACAAGIGLFIAFVG LQIHQGLGLVGPDPSTLVTVTACASTDPVTGNCLGGKMRSPTFWLGFAGFLITCYGLM KEIKGSMIYGILFVTLISWIRGTAVTYFPDTTLGDANYNYFKKVVDFHKIQSTAGAIS FSNFNRSEVWVALATLLYVDVLATTGTLYTMAEIGGFVDDKGSFEGEYLAYIVDSSST VMASALGVSPVATYVESSAGIKEGGRTGLTAVIVGVYFFLSLFFTPLLTSVPPWAIGP SLVMVGVMMMKVVKDINWGNMKEAAPAFVTMLLMPLTYSIANGIIGGIGLYAALSLYD LVLELIRWLNKMRKMVVREQNQVSAATTGAESTVEII" mobile_element complement(23191685..23191911) /note="source:CACAO_PIF_E119_scaffold_3 4432 4680" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23192185..23192681) /note="source:scaffold_10_CACTA_0130 8968 9608" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23192682..23193009 /note="source:CACAO_on_E565_scaffold_5 751 1106" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23192705..23192992) /note="source:CACAO_on_E238_scaffold_8 2073 2372" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23193010..23193463) /note="source:scaffold_10_CACTA_0130 8380 8967" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23193470..23193805) /note="source:scaffold_10_CACTA_0130 6245 6594" /mobile_element_type="transposon:TIR/CACTA" gene complement(23194023..23194857) /locus_tag="TCM_014562" /note="dbxref CacaoGD:Thecc1EG014562" mRNA complement(join(23194023..23194522,23194638..23194857)) /locus_tag="TCM_014562" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400027712" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(23194262..23194522,23194638..23194844)) /locus_tag="TCM_014562" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22371.1" /db_xref="Phytozome:PGSC0003DMP400027712" /translation="MDTEVNIILSEHRSLVKKFIIRVLRVGPIPNHIAFSMYGNRRYA EKRKLEGGAGHDAGILTLILFMLIYIALLTSIVNRFAGNLQLLTAGIREAANKPMEAA VDFSKGVLTICIAYNCTNEILHAIQKSCEGKCNDRIQEMIISHHHGDDHNLIN" gene 23196170..23206370 /locus_tag="TCM_014563" /note="dbxref CacaoGD:Thecc1EG014563" mRNA join(23196170..23196506,23196708..23196794, 23196907..23196975,23197081..23197213,23197308..23197354, 23197452..23197538,23197732..23197793,23198416..23198458, 23198558..23198638,23199933..23200049,23200778..23200883, 23202237..23202300,23202631..23202673,23202903..23203166, 23203248..23203409,23203798..23203929,23204223..23204375, 23204575..23204661,23204975..23205043,23205160..23205623, 23205996..23206370) /locus_tag="TCM_014563" /product="Galactose oxidase/kelch repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007548001" /inference="similar to AA sequence:Phytozome:GSVIVT01007548001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04626t00001" mRNA join(23196199..23196506,23196708..23196794, 23196907..23196975,23197081..23197213,23197308..23197354, 23197452..23197538,23197732..23197793,23198416..23198458, 23198558..23198638,23199933..23200049,23200778..23200883, 23202237..23202300,23202631..23202673,23202903..23203166, 23203248..23203409,23203798..23203929,23204223..23204375, 23204547..23204661,23204975..23205043,23205160..23205567) /locus_tag="TCM_014563" /product="Galactose oxidase/kelch repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007548001" /inference="similar to AA sequence:Phytozome:GSVIVT01007548001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1098t9; inference alignment:Newbler:10:TSA:cgbaB_g04626t00001" CDS join(23196375..23196506,23196708..23196794, 23196907..23196975,23197081..23197213,23197308..23197354, 23197452..23197538,23197732..23197793,23198416..23198458, 23198558..23198638,23199933..23200049,23200778..23200883, 23202237..23202300,23202631..23202673,23202903..23203166, 23203248..23203409,23203798..23203929,23204223..23204375, 23204575..23204661,23204975..23205043,23205160..23205246) /locus_tag="TCM_014563" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 1" /protein_id="EOY22372.1" /db_xref="Phytozome:GSVIVT01007548001" /db_xref="TAIR:AT5G50310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q945N1" /translation="MGKKTKKPGKGKEKTERKTAKAEEKRARRESKKLSPEDDIDAIL LSIQKEEAKKKEVHIDENVPAPSPRSNCTLSINPLKETELVLYGGEFYNGSKTFVYGD LYRYDVEKMEWKLVSSPNSPPPRSAHQAVAWKNYLYIFGGEFTSPNQERFHHYKDFWM LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYHNDLYIFDLDE FKWQEIKPKLGSMWPSARSGFQFFMYQDQIFLYGGYSKEVSSDKNSSEKGIVHSDMWS LDPRTWEWNKVKKSGMPPGARAGFSMCVHKKRALLFGGVVDMEMKDDVMMSLFLNELY GFQLDNHRWYPLELRKEKSTKVKLKRNSELEPDGPDSNDKINIEAEASGVDDRDQISE YDEEADDEENNINEMSQNMVANMQIDDGGSIKSAAKPQQSKSKLNFQSSVSPEIVKPC GRINSCMVVGKDTLYVYGGMMEVKDQEITLDDLYSLNLSKLDEWKCIIPASESEWVEA SEDEDEDEDEDEDDSEEMGEPGSYGEETDDDDDAEASNDGAGSLQMGDAVAFVRGEGK NLRRKEKRARIEQIRANLGLSDSQRTPMPGESLRDFYRRTSLYWQMAAHEHTQHTGKE LRKDGFDLAEARYRELKPLLDELAILEAEQKAEEAEGPETSSRKRGKRKT" CDS join(23196375..23196506,23196708..23196794, 23196907..23196975,23197081..23197213,23197308..23197354, 23197452..23197538,23197732..23197793,23198416..23198458, 23198558..23198638,23199933..23200049,23200778..23200883, 23202237..23202300,23202631..23202673,23202903..23203166, 23203248..23203409,23203798..23203929,23204223..23204375, 23204547..23204612) /locus_tag="TCM_014563" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 2" /protein_id="EOY22373.1" /db_xref="Phytozome:GSVIVT01007548001" /db_xref="TAIR:AT5G50310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q945N1" /translation="MGKKTKKPGKGKEKTERKTAKAEEKRARRESKKLSPEDDIDAIL LSIQKEEAKKKEVHIDENVPAPSPRSNCTLSINPLKETELVLYGGEFYNGSKTFVYGD LYRYDVEKMEWKLVSSPNSPPPRSAHQAVAWKNYLYIFGGEFTSPNQERFHHYKDFWM LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYHNDLYIFDLDE FKWQEIKPKLGSMWPSARSGFQFFMYQDQIFLYGGYSKEVSSDKNSSEKGIVHSDMWS LDPRTWEWNKVKKSGMPPGARAGFSMCVHKKRALLFGGVVDMEMKDDVMMSLFLNELY GFQLDNHRWYPLELRKEKSTKVKLKRNSELEPDGPDSNDKINIEAEASGVDDRDQISE YDEEADDEENNINEMSQNMVANMQIDDGGSIKSAAKPQQSKSKLNFQSSVSPEIVKPC GRINSCMVVGKDTLYVYGGMMEVKDQEITLDDLYSLNLSKLDEWKCIIPASESEWVEA SEDEDEDEDEDEDDSEEMGEPGSYGEETDDDDDAEASNDGAGSLQMGDAVAFVRGEGK NLRRKEKRARIEQIRANLGLSDSQRTPMIGCHMFPFAAWRILKGFLQTY" gene 23207040..23210733 /locus_tag="TCM_014564" /note="dbxref CacaoGD:Thecc1EG014564" mRNA join(23207040..23207203,23207563..23207591, 23207803..23207887,23207988..23208197,23208594..23208716, 23208798..23208855,23209033..23209106,23209459..23209547, 23209626..23209698,23210265..23210280) /locus_tag="TCM_014564" /product="C2H2-like zinc finger protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10200.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017058t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06742t00001; inference alignment:Newbler:10:TSA:cgbaP2_g07648t00001" mRNA join(23207072..23207203,23207566..23207591, 23207803..23207887,23207988..23208197,23208594..23208716, 23208798..23208855,23209033..23209106,23209459..23209547, 23209626..23209698,23210265..23210733) /locus_tag="TCM_014564" /product="C2H2-like zinc finger protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10200.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017058t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07648t00001; inference alignment:Newbler:10:TSA:cgbaP2_g07648t00001" CDS join(23207129..23207203,23207563..23207591, 23207803..23207887,23207988..23208197,23208594..23208716, 23208798..23208855,23209033..23209106,23209459..23209547, 23209626..23209695) /locus_tag="TCM_014564" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017058t1" /codon_start=1 /product="C2H2-like zinc finger protein isoform 2" /protein_id="EOY22375.1" /db_xref="Phytozome:POPTR_0015s10200.1" /db_xref="TAIR:AT5G63280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZP2" /translation="MGRGAKAITSILLIEFLLLYNTVSQQGLEESAAARTLQQEPHHT NEVHCSRERSRAAWKIIEDYLMPFLEEEGFQISTKCRLHPDNDLFRDQEQHKIYLDVN EWRCGYCKKSFRAENFLDQHFDDRHYNLLNVNQSKCLADLCGALHCDFVMNSKSLKAK CNPAAVARNRHLCESLADSCFPITQGPSASRLHELFLHQFCDAHTCSRKKKPFPKGGK KQTSVLYMATSILILMLLPIFYLLYYLYQREMNRGTQVLRRVSQVGRKTKPS" CDS join(23207129..23207203,23207566..23207591, 23207803..23207887,23207988..23208197,23208594..23208716, 23208798..23208855,23209033..23209106,23209459..23209547, 23209626..23209695) /locus_tag="TCM_014564" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017058t1" /codon_start=1 /product="C2H2-like zinc finger protein isoform 1" /protein_id="EOY22374.1" /db_xref="Phytozome:POPTR_0015s10200.1" /db_xref="TAIR:AT5G63280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZP2" /translation="MGRGAKAITSILLIEFLLLYNTVSQGLEESAAARTLQQEPHHTN EVHCSRERSRAAWKIIEDYLMPFLEEEGFQISTKCRLHPDNDLFRDQEQHKIYLDVNE WRCGYCKKSFRAENFLDQHFDDRHYNLLNVNQSKCLADLCGALHCDFVMNSKSLKAKC NPAAVARNRHLCESLADSCFPITQGPSASRLHELFLHQFCDAHTCSRKKKPFPKGGKK QTSVLYMATSILILMLLPIFYLLYYLYQREMNRGTQVLRRVSQVGRKTKPS" gene complement(23210853..23212959) /locus_tag="TCM_014565" /note="dbxref CacaoGD:Thecc1EG014565" mRNA complement(join(23210853..23211807,23211882..23212959)) /locus_tag="TCM_014565" /product="Radical SAM superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30147.m013803" /inference="similar to AA sequence:ricco:30147.m013803" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2168t2" CDS complement(join(23211180..23211807,23211882..23212684)) /locus_tag="TCM_014565" /note="dbxref ricco:30147.m013803" /codon_start=1 /product="Radical SAM superfamily protein" /protein_id="EOY22376.1" /db_xref="TAIR:AT5G63290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FMJ4" /translation="MLKSTLTPIFSTFPAKPSYPKLLTRAISCTLTPTPPTAQQNASP NIFTTPQLPPTSAYIHLPFCRKRCHYCDFPIVALGSSSTQTYGDGDDDDPRMSNYVQL LCREINATKVNFKSHPPLETVFFGGGTPSLVPPRLVSSVLDLLREKFGVSSDAEISME MDPGTFDAKKMEELKALGVNRVSLGVQAFQDELLKACGRAHGVNEVYEAIEIVNSCGV ENWSLDLISSLPHQSPQMWERSLRLTVEAQPKHVSVYDLQVEQGTKFGTLYKPGEFPL PSDVQSADFYSMASATLSDAGYNHYEISSYCQDGFECKHNFTYWKNKPFYGFGLGAAS YVCGMRFSRPKKMRGYIDFVQNLENGTMDYTGNSKIDTRDLATDVVMLSLRTATGLDL KSFQGTFGSSVVCSLCEAYKPFVESGHVLCLNEQRRVLAADEYNTLLLNEGVIGKGLA YIRLSDPDGFLLSNELISVAFGVVAP" gene complement(23213013..23217344) /locus_tag="TCM_014566" /note="dbxref CacaoGD:Thecc1EG014566" mRNA complement(join(23213013..23213372,23213572..23214092, 23214185..23214404,23214520..23214686,23215033..23215207, 23215575..23215747,23215863..23215932,23216360..23216817)) /locus_tag="TCM_014566" /product="Radical SAM domain-containing protein / GCN5-related N-acetyltransferase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m013802" /inference="similar to AA sequence:ricco:30147.m013802" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc843t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5239t1" mRNA complement(join(23213013..23213372,23213572..23213724, 23213988..23214404,23214520..23214686,23215033..23215207, 23215575..23215747,23215863..23215932,23216360..23216817)) /locus_tag="TCM_014566" /product="Radical SAM domain-containing protein / GCN5-related N-acetyltransferase family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m013802" /inference="similar to AA sequence:ricco:30147.m013802" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc843t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5239t1" mRNA complement(join(23213018..23213372,23213572..23213724, 23213988..23214064,23214185..23214404,23214520..23214686, 23215033..23215207,23215575..23215747,23215863..23215932, 23216360..23217344)) /locus_tag="TCM_014566" /product="Radical SAM domain-containing protein / GCN5-related N-acetyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m013802" /inference="similar to AA sequence:ricco:30147.m013802" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b014073t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5239t1" mRNA complement(join(23213018..23213372,23213572..23213724, 23213988..23214092,23214185..23214404,23214520..23214686, 23215033..23215207,23215575..23215747,23215863..23215932, 23216360..23217344)) /locus_tag="TCM_014566" /product="Radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013802" /inference="similar to AA sequence:ricco:30147.m013802" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5239t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5239t1" CDS complement(join(23213214..23213372,23213572..23213724, 23213988..23214092,23214185..23214404,23214520..23214686, 23215033..23215207,23215575..23215747,23215863..23215932, 23216360..23216832)) /locus_tag="TCM_014566" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013802" /codon_start=1 /product="Radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein isoform 1" /protein_id="EOY22377.1" /db_xref="TAIR:AT5G50320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9H9T3" /translation="MATAVMAPEPKKLPRPGRGGFQAHGLTEEEARVRAIAEIVSTMV ELSRKNQTVDLNAIKSAACRKYGLTRSPKLVEMIAALPESDRESLLPKLRAKPVRTAS GIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYN PYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANV EEAVTYSEHSAVKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTN RGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFKEFFESPLFRADGLKI YPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVT SGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHKIKPEEVELVRRDYTANEGW ETFLSYEDTCQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADK LQHQGYGTLLMEEAERIARREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLV" CDS complement(join(23213661..23213724,23213988..23214064, 23214185..23214404,23214520..23214686,23215033..23215207, 23215575..23215747,23215863..23215932,23216360..23216832)) /locus_tag="TCM_014566" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013802" /codon_start=1 /product="Radical SAM domain-containing protein / GCN5-related N-acetyltransferase family protein isoform 2" /protein_id="EOY22378.1" /db_xref="TAIR:AT5G50320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9H9T3" /translation="MATAVMAPEPKKLPRPGRGGFQAHGLTEEEARVRAIAEIVSTMV ELSRKNQTVDLNAIKSAACRKYGLTRSPKLVEMIAALPESDRESLLPKLRAKPVRTAS GIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYN PYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANV EEAVTYSEHSAVKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTN RGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFKEFFESPLFRADGLKI YPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVT SGVEKGNLRELALARMDDLGLKCRDVRTREAGIQKLSLFDVIIQQMKVGKHFCHMKIH ARIFLLGCCVCESVAGTLLALN" CDS complement(join(23213661..23214092,23214185..23214404, 23214520..23214686,23215033..23215207,23215575..23215747, 23215863..23215932,23216360..23216817)) /locus_tag="TCM_014566" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m013802" /codon_start=1 /product="Radical SAM domain-containing protein / GCN5-related N-acetyltransferase family protein isoform 3" /protein_id="EOY22379.1" /db_xref="TAIR:AT5G50320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9H9T3" /translation="MAPEPKKLPRPGRGGFQAHGLTEEEARVRAIAEIVSTMVELSRK NQTVDLNAIKSAACRKYGLTRSPKLVEMIAALPESDRESLLPKLRAKPVRTASGIAVV AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQA RSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVT YSEHSAVKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTV AAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFKEFFESPLFRADGLKIYPTLV IRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEK GNLRELALARMDDLGLKCRDVRTREAGIQDIHHKIKPEEVELVRRDYTANEGWETFLS YEDTCQVTARTISPVGACVCICLQLIFCHMQISISVLLLTGVISWYFLNYFINVLSNL KLSISFGNDCTSWYNVFLHNSLFLLEHNVPSRFGHRIFLLGCCVCESVAGTLLALN" CDS complement(join(23213661..23213724,23213988..23214404, 23214520..23214686,23215033..23215207,23215575..23215747, 23215863..23215932,23216360..23216817)) /locus_tag="TCM_014566" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m013802" /codon_start=1 /product="Radical SAM domain-containing protein / GCN5-related N-acetyltransferase family protein isoform 4" /protein_id="EOY22380.1" /db_xref="TAIR:AT5G50320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9H9T3" /translation="MAPEPKKLPRPGRGGFQAHGLTEEEARVRAIAEIVSTMVELSRK NQTVDLNAIKSAACRKYGLTRSPKLVEMIAALPESDRESLLPKLRAKPVRTASGIAVV AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQA RSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVT YSEHSAVKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTV AAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFKEFFESPLFRADGLKIYPTLV IRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEK GNLRELALARMDDLGLKCRDVRTREAGIQVRRHNLAPQESVHAEKQKPFEGVMACLFE NRTFTTKLNLKKLSLFDVIIQQMKVGKHFCHMKIHARIFLLGCCVCESVAGTLLALN" gene 23217062..23226626 /locus_tag="TCM_014567" /note="dbxref CacaoGD:Thecc1EG014567" mRNA join(23217062..23217230,23217388..23217416, 23217507..23217609,23217704..23217875,23218159..23218344, 23218571..23218710,23219476..23219752,23220971..23221185, 23221478..23221576,23221668..23222191,23222582..23223351, 23223657..23223855,23224038..23224286,23224486..23225070, 23226602..23226626) /locus_tag="TCM_014567" /product="Embryo defective 2423, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007540001" /inference="similar to AA sequence:Phytozome:GSVIVT01007540001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1632t12" CDS join(23217068..23217230,23217388..23217416, 23217507..23217609,23217704..23217875,23218159..23218344, 23218571..23218710,23219476..23219752,23220971..23221185, 23221478..23221576,23221668..23222191,23222582..23223351, 23223657..23223855,23224038..23224193) /locus_tag="TCM_014567" /codon_start=1 /product="Embryo defective 2423, putative" /protein_id="EOY22381.1" /db_xref="Phytozome:GSVIVT01007540001" /db_xref="TAIR:AT3G48470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JF17" /translation="MEEAKRTRELESRVVEKVGEVIREIERAKQADQVICTLHSLAVL LFPIDSSLLSGSIDERFKDQIVSAKVHAANERDDWWKAFYQGAAFPTLARVLLLDIAS SWLTCFPLSAKKHVYDVFFVNGLSTEVVQVLVPCLRQSCSDVHDVNTIQSNVERLLVL CLLDNGGVLKMAKEFSISSQSKDIINERLKSAVSRVAQIVTSIPDKARLRAPPLLSSH LFFKQITIQLLSGLVERLAISNRSDMDVNCLFIGEIFSRICRRGSSDVLLIEVTPQIL RHVRSCLSSNSDIVDRDVFESNPESQFWLKIMEAITDPYTVERISEQLLHQLATEHAS DIEAYWVLWILFHQLLQRQSSVRSMFVDKFLLWKVFPVCCLQWILQFAVLGCPPVTNS QTKGHETNGLFDTVQRLAAVWSKRDFVQSAPVEQQAYITAAVGLCLEKMSKEELDKTK DVMQSILQGVSCRLDSPADLVRKMASTIALVFSKVIDPKNPLYLDDSCNGESIDWEFG LTTTEKGPLSISNAEKQIDETGTSTTPMLTKDFTHTADGLKGSNVKSKSKKSSEFSLV DPDEIIDPATLNYKSVSDENDDEDASENSDSSDSSLQPYDLTDDDTDLKRKMSQLVDV VGALRKSDDADGVERALDVAESLIRASPDELTHVAGDLVRTLVQVRCSDTAVEGEEET AEEKRQRALIALIVTRPFESLDTLNKLLYSPNVDVSQRIMILDVMTQAAEELANSKTM KPKHQTGPLISTISEPQPWFLPSNVGPPGAGSWREISDTGTLLNWSNRYERELPLNPG QVKRGKTRRWSLRSGNIREGQIEWSQNKFPLYAAAFMLPAMQGFDKKRRGVDLLGSDF LVLGKLIYMLGVGMKCASMHPEASALAPPLLDMLRSREVCHHKEAYVRRAVLFAASCV LVALHPSYIASSLVEGNLEISEGLEWIRTWALQVADSDTDRECYTMAVSCLQLHSEMA LQASRALESAESTFKAKSINLSSSLSKGTIKIPYSNVE" gene 23224279..23226995 /locus_tag="TCM_014568" /note="dbxref CacaoGD:Thecc1EG014568" mRNA join(23224279..23224286,23224486..23225070, 23226602..23226995) /locus_tag="TCM_014568" /product="Ribosomal protein S21 family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s09420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017179t2" /inference="similar to AA sequence:ricco:30190.m010942" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11624t00001" CDS join(23224547..23225070,23226602..23226710) /locus_tag="TCM_014568" /note="dbxref ricco:30190.m010942; paralog of Thecc1EG017179t2" /codon_start=1 /product="Ribosomal protein S21 family protein, putative" /protein_id="EOY22382.1" /db_xref="TAIR:AT3G27160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94BT7" /translation="MGPNNQHPSPQNSRIKTPTPRCQSSMAFSLSSLSKSLSSLLPSR SKPNSPSLLSPTTLQLPKRASGCALLVPTWDPKPTSTSTCLSSSLTTADDITAITCPS LAYANALFFKSGCYNVQVVVAENEPEEKLLGRFRRAVFKAGVIQECKRRRFFESSQDK KKRKAREASKRNRKRRPQRKASAQAKEETPKKKDDDEDDNWELPGGDLPY" gene complement(23227696..23230110) /locus_tag="TCM_014569" /note="dbxref CacaoGD:Thecc1EG014569" mRNA complement(join(23227696..23228178,23228271..23228381, 23228453..23228534,23228619..23228750,23228836..23229003, 23229084..23229330,23229780..23230061)) /locus_tag="TCM_014569" /product="Cysteine proteinases superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013800" /inference="similar to AA sequence:Phytozome:POPTR_0010s18760.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02025t00002" mRNA complement(join(23227814..23228178,23228271..23228372, 23228453..23228534,23228619..23228750,23228836..23229003, 23229084..23229276,23229780..23230110)) /locus_tag="TCM_014569" /product="Cysteine proteinases superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m013800" /inference="similar to AA sequence:Phytozome:POPTR_0010s18760.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc565t6_C2; inference alignment:Newbler:10:TSA:cgbaP2_g02025t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc817t8" mRNA complement(join(23227814..23228178,23228271..23228534, 23228619..23228750,23228836..23229003,23229084..23229330, 23229780..>23229805)) /locus_tag="TCM_014569" /product="Cysteine proteinases superfamily protein, putative isoform 6" /inference="alignment:exonerate- protein:2:ricco:30147.m013800" /inference="similar to AA sequence:Phytozome:POPTR_0010s18760.1" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc565t7_C2; inference alignment:Newbler:10:TSA:cgbaP2_g02025t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc817t8" mRNA complement(join(23227852..23228178,23228271..23228534, 23228619..23228750,23228836..23229003,23229084..23229276, 23229780..23229902)) /locus_tag="TCM_014569" /product="Cysteine proteinases superfamily protein, putative isoform 7" /inference="alignment:exonerate- protein:2:ricco:30147.m013800" /inference="similar to AA sequence:Phytozome:POPTR_0010s18760.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02025t00001; inference alignment:Newbler:10:TSA:cgbaP2_g02025t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc817t8" mRNA complement(join(23227864..23228178,23228271..23228381, 23228453..23228534,23228619..23228708,23228836..23229003, 23229084..23229276,23229780..23229948)) /locus_tag="TCM_014569" /product="Cysteine proteinases superfamily protein, putative isoform 5" /inference="alignment:exonerate- protein:2:ricco:30147.m013800" /inference="similar to AA sequence:Phytozome:POPTR_0010s18760.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00584t00004; inference alignment:Newbler:10:TSA:cgbaP2_g02025t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc817t8" mRNA complement(join(23227864..23228178,23228271..23228381, 23228453..23228534,23228619..23228750,23228836..23229003, 23229084..23229276,23229780..23229948)) /locus_tag="TCM_014569" /product="Cysteine proteinases superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m013800" /inference="similar to AA sequence:Phytozome:POPTR_0010s18760.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00584t00002; inference alignment:Newbler:10:TSA:cgbaP2_g02025t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc817t8" mRNA complement(join(23227864..23228178,23228271..23228381, 23228453..23228534,23228619..23228708,23228836..23229003, 23229084..23229330,23229780..23229948)) /locus_tag="TCM_014569" /product="Cysteine proteinases superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m013800" /inference="similar to AA sequence:Phytozome:POPTR_0010s18760.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00584t00003; inference alignment:Newbler:10:TSA:cgbaP2_g02025t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc817t8" CDS complement(join(23228107..23228178,23228271..23228381, 23228453..23228534,23228619..23228708,23228836..23229003, 23229084..23229276,23229780..23229843)) /locus_tag="TCM_014569" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein, putative isoform 5" /protein_id="EOY22387.1" /db_xref="Phytozome:POPTR_0010s18760.1" /db_xref="TAIR:AT3G48480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYH3" /translation="MGNEKHGDDPAKPIDLASSDPGSLKARKKKISKQEAQKLRDFRL TAPCFLGNIPCRQRSKRRVKSKNSISKQTNRLDSGAFECYMEKLWSSFPEEKRTSFAY FDCQWFAWYRKASFREKVLSWIKREQIFSKKYVLVPVVCCLQSETKTPCMLLLDSLEI ANPRRLEPDIRKFVLDIYRAEGRPEKKEMIYRIPLLVPKVPQQRDGEECGKFVLYFIN LFVEGAPENFSIEGYPYFMRKDWFNAEGVECFCEKLDSFGK" CDS complement(join(23228107..23228178,23228271..23228372, 23228453..23228534,23228619..23228750,23228836..23229003, 23229084..23229276,23229780..23229843)) /locus_tag="TCM_014569" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein, putative isoform 4" /protein_id="EOY22386.1" /db_xref="Phytozome:POPTR_0010s18760.1" /db_xref="TAIR:AT3G48480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYH3" /translation="MGNEKHGDDPAKPIDLASSDPGSLKARKKKISKQEAQKLRDFRL TAPCFLGNIPCRQRSKRRVKSKNSISKQTNRLDSGAFECYMEKLWSSFPEEKRTSFAY FDCQWFAWYRKASFREKVLSWIKREQIFSKKYVLVPVVCWSHWSLLIFCHFGESLQSE TKTPCMLLLDSLEIANPRRLEPDIRKFVLDIYRAEGRPEKKEMIYRIPLLVPKQRDGE ECGKFVLYFINLFVEGAPENFSIEGYPYFMRKDWFNAEGVECFCEKLDSFGK" CDS complement(join(23228107..23228178,23228271..23228381, 23228453..23228534,23228619..23228750,23228836..23229003, 23229084..23229276,23229780..23229843)) /locus_tag="TCM_014569" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein, putative isoform 3" /protein_id="EOY22385.1" /db_xref="Phytozome:POPTR_0010s18760.1" /db_xref="TAIR:AT3G48480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYH3" /translation="MGNEKHGDDPAKPIDLASSDPGSLKARKKKISKQEAQKLRDFRL TAPCFLGNIPCRQRSKRRVKSKNSISKQTNRLDSGAFECYMEKLWSSFPEEKRTSFAY FDCQWFAWYRKASFREKVLSWIKREQIFSKKYVLVPVVCWSHWSLLIFCHFGESLQSE TKTPCMLLLDSLEIANPRRLEPDIRKFVLDIYRAEGRPEKKEMIYRIPLLVPKVPQQR DGEECGKFVLYFINLFVEGAPENFSIEGYPYFMRKDWFNAEGVECFCEKLDSFGK" CDS complement(join(23228107..23228178,23228271..23228381, 23228453..23228534,23228619..23228708,23228836..23229003, 23229084..23229330,23229780..23229843)) /locus_tag="TCM_014569" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein, putative isoform 2" /protein_id="EOY22384.1" /db_xref="Phytozome:POPTR_0010s18760.1" /db_xref="TAIR:AT3G48480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYH3" /translation="MGNEKHGDDPAKPIDLASSDPEYNGYPISKHRSCWVHVIGSLKA RKKKISKQEAQKLRDFRLTAPCFLGNIPCRQRSKRRVKSKNSISKQTNRLDSGAFECY MEKLWSSFPEEKRTSFAYFDCQWFAWYRKASFREKVLSWIKREQIFSKKYVLVPVVCC LQSETKTPCMLLLDSLEIANPRRLEPDIRKFVLDIYRAEGRPEKKEMIYRIPLLVPKV PQQRDGEECGKFVLYFINLFVEGAPENFSIEGYPYFMRKDWFNAEGVECFCEKLDSFG K" CDS complement(join(23228107..23228178,23228271..23228381, 23228453..23228534,23228619..23228750,23228836..23229003, 23229084..23229330,23229780..23229843)) /locus_tag="TCM_014569" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein, putative isoform 1" /protein_id="EOY22383.1" /db_xref="Phytozome:POPTR_0010s18760.1" /db_xref="TAIR:AT3G48480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYH3" /translation="MGNEKHGDDPAKPIDLASSDPEYNGYPISKHRSCWVHVIGSLKA RKKKISKQEAQKLRDFRLTAPCFLGNIPCRQRSKRRVKSKNSISKQTNRLDSGAFECY MEKLWSSFPEEKRTSFAYFDCQWFAWYRKASFREKVLSWIKREQIFSKKYVLVPVVCW SHWSLLIFCHFGESLQSETKTPCMLLLDSLEIANPRRLEPDIRKFVLDIYRAEGRPEK KEMIYRIPLLVPKVPQQRDGEECGKFVLYFINLFVEGAPENFSIEGYPYFMRKDWFNA EGVECFCEKLDSFGK" CDS complement(join(23228408..23228534,23228619..23228750, 23228836..23229003,23229084..23229276,23229780..23229843)) /locus_tag="TCM_014569" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein, putative isoform 7" /protein_id="EOY22389.1" /db_xref="Phytozome:POPTR_0010s18760.1" /db_xref="TAIR:AT3G48480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYH3" /translation="MGNEKHGDDPAKPIDLASSDPGSLKARKKKISKQEAQKLRDFRL TAPCFLGNIPCRQRSKRRVKSKNSISKQTNRLDSGAFECYMEKLWSSFPEEKRTSFAY FDCQWFAWYRKASFREKVLSWIKREQIFSKKYVLVPVVCWSHWSLLIFCHFGESLQSE TKTPCMLLLDSLEIANPRRLEPDIRKFVLDIYRAEGRPEKKEMIYRIPLLVPKVIIVQ ALGVVFIIL" CDS complement(join(23228408..23228534,23228619..23228750, 23228836..23229003,23229084..23229330, 23229780..>23229804)) /locus_tag="TCM_014569" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein, putative isoform 6" /protein_id="EOY22388.1" /db_xref="Phytozome:POPTR_0010s18760.1" /db_xref="TAIR:AT3G48480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYH3" /translation="IDLASSDPEYNGYPISKHRSCWVHVIGSLKARKKKISKQEAQKL RDFRLTAPCFLGNIPCRQRSKRRVKSKNSISKQTNRLDSGAFECYMEKLWSSFPEEKR TSFAYFDCQWFAWYRKASFREKVLSWIKREQIFSKKYVLVPVVCWSHWSLLIFCHFGE SLQSETKTPCMLLLDSLEIANPRRLEPDIRKFVLDIYRAEGRPEKKEMIYRIPLLVPK VIIVQALGVVFIIL" gene 23231291..23235101 /locus_tag="TCM_014570" /note="dbxref CacaoGD:Thecc1EG014570" mRNA join(23231291..23231603,23231708..23231822, 23232790..23232880,23232984..23233129,23233227..23233446, 23233545..23233653,23233830..23234002,23234176..23234258, 23234548..23234577) /locus_tag="TCM_014570" /product="26S proteasome, regulatory subunit Rpn7,Proteasome component (PCI) domain isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007538001" /inference="similar to AA sequence:ricco:30147.m013798" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc484t7; inference alignment:Newbler:10:TSA:cgbaB_g07770t00001" mRNA join(23231291..23231603,23231708..23231822, 23232790..23232880,23232984..23233129,23233227..23233446, 23233545..23233653,23233830..23234077) /locus_tag="TCM_014570" /product="26S proteasome, regulatory subunit Rpn7,Proteasome component (PCI) domain isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007538001" /inference="similar to AA sequence:ricco:30147.m013798" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc484t6; alternateUTRof:Thecc1EG014570t2; inference alignment:Newbler:10:TSA:cgbaB_g07770t00001" mRNA join(23231376..23231603,23231708..23231822, 23232790..23232880,23232984..23233129,23233227..23233446, 23233545..23233653,23233830..23233998,23234176..23235101) /locus_tag="TCM_014570" /product="26S proteasome, regulatory subunit Rpn7,Proteasome component (PCI) domain isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007538001" /inference="similar to AA sequence:Phytozome:GSVIVT01007538001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07770t00001" CDS join(23231465..23231603,23231708..23231822, 23232790..23232880,23232984..23233129,23233227..23233446, 23233545..23233653,23233830..23233998,23234176..23234350) /locus_tag="TCM_014570" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="26S proteasome, regulatory subunit Rpn7,Proteasome component (PCI) domain isoform 1" /protein_id="EOY22390.1" /db_xref="Phytozome:GSVIVT01007538001" /db_xref="TAIR:AT4G24820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3L7" /translation="MDVQEGTQQSQQLILAHNVFLLKHPDVPDIEKVSLKDEVLNSVK PNDMTPYYETLVADKVVELDQSVLDLMRSKNVDEIKKIDEKIADAEENLGESEVREAH LAKSLYYIQIGEKEKALEQLKVTESKTVAVGQKMDLVFCTLQIGFFYMDFDLISKSID KAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFI FYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFLAFAGL TEQIKLDRYLHPHFRFYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDLELSR FIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL" CDS join(23231465..23231603,23231708..23231822, 23232790..23232880,23232984..23233129,23233227..23233446, 23233545..23233653,23233830..23234002) /locus_tag="TCM_014570" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013798" /codon_start=1 /product="26S proteasome, regulatory subunit Rpn7,Proteasome component (PCI) domain isoform 2" /protein_id="EOY22391.1" /db_xref="TAIR:AT4G24820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3L7" /translation="MDVQEGTQQSQQLILAHNVFLLKHPDVPDIEKVSLKDEVLNSVK PNDMTPYYETLVADKVVELDQSVLDLMRSKNVDEIKKIDEKIADAEENLGESEVREAH LAKSLYYIQIGEKEKALEQLKVTESKTVAVGQKMDLVFCTLQIGFFYMDFDLISKSID KAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFI FYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFLAFAGL TEQIKLDRYLHPHFRFYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDL" CDS join(23231465..23231603,23231708..23231822, 23232790..23232880,23232984..23233129,23233227..23233446, 23233545..23233653,23233830..23234002) /locus_tag="TCM_014570" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m013798" /codon_start=1 /product="26S proteasome, regulatory subunit Rpn7,Proteasome component (PCI) domain isoform 2" /protein_id="EOY22392.1" /db_xref="TAIR:AT4G24820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3L7" /translation="MDVQEGTQQSQQLILAHNVFLLKHPDVPDIEKVSLKDEVLNSVK PNDMTPYYETLVADKVVELDQSVLDLMRSKNVDEIKKIDEKIADAEENLGESEVREAH LAKSLYYIQIGEKEKALEQLKVTESKTVAVGQKMDLVFCTLQIGFFYMDFDLISKSID KAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFI FYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFLAFAGL TEQIKLDRYLHPHFRFYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDL" gene 23236311..23243971 /locus_tag="TCM_014571" /note="dbxref CacaoGD:Thecc1EG014571" mRNA join(23236311..23236969,23237053..23237181, 23237632..23237826,23238204..23238251,23238321..23238449, 23239396..23239520,23240504..23240614,23241148..23241256, 23241445..23241563,23241844..23241997,23242341..23242485, 23243155..23243235,23243325..23243663) /locus_tag="TCM_014571" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10290.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s10290.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04526t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5182t2" mRNA join(23236316..23236969,23237053..23237181, 23237632..23237826,23238204..23238251,23238321..23238449, 23239396..23239520,23240504..23240614,23241148..23241256, 23241445..23241563,23241844..23241997,23242341..23242485, 23242759..23242840,23242988..23243045,23243155..23243235, 23243325..23243410,23243490..23243971) /locus_tag="TCM_014571" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10290.2" /inference="similar to AA sequence:ricco:30147.m013797" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5182t2" CDS join(23236844..23236969,23237053..23237181, 23237632..23237826,23238204..23238251,23238321..23238449, 23239396..23239520,23240504..23240614,23241148..23241256, 23241445..23241563,23241844..23241997,23242341..23242485, 23242759..23242840,23242988..23243045,23243155..23243235, 23243325..23243410,23243490..23243622) /locus_tag="TCM_014571" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013797" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY22393.1" /db_xref="TAIR:AT5G50330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF59" /translation="MNAIGSRFDFKEIQEKVSLHLRPWHRSLQFWVRAADIYTGYKVF QVRVSFVKDVQKQEAMWERQHELAADKIYAMCSDLGGFFLKVAQIIGKPDLAPAAWVK RLVTLCDQAPATPFDAVKFVLEKELGRSVGDIFEKFDVNPLGSASIAQVHRARLRGDK SDVVVKVQHPGIQDLMMTDIHNLQAFALYIQKTDIKFDLYSVTKEMEKQIGYEFDFLR EANAMERIRHFLYKNNKKSPVLIPRALQDLVTRRVLVMEYIDGIPILNLGDEMAKRGI NPGGKMAAAAKQNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVK DLPDQLRLGYANLVLAMADNDPVKAAESYRELGIETVSNCENEQQELLRLAQTMFDTK LPPGVVMLQPFSEDSSIKKVGVQSFPEELFSVLRTVHLLRGLSVGLGINYSCAEQWRA IAEEALYDAGRLKDIIGPRGFERGSWEFPSSMGGVLSPCQSVSVLLVCLCSAIVTSEG LHVPIKRLKFVSGVPSEDYFGEIDWLEEEKSNSFLEDTFIGLPSFVMFTSSLVLICMQ ALDKAAAIYFCTLKACTFGKALLFPTPRNPCTSLESKPISSRI" CDS join(23236844..23236969,23237053..23237181, 23237632..23237826,23238204..23238251,23238321..23238449, 23239396..23239520,23240504..23240614,23241148..23241256, 23241445..23241563,23241844..23241997,23242341..23242485, 23243155..23243219) /locus_tag="TCM_014571" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY22394.1" /db_xref="Phytozome:POPTR_0015s10290.2" /db_xref="TAIR:AT5G50330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JRQ4" /translation="MNAIGSRFDFKEIQEKVSLHLRPWHRSLQFWVRAADIYTGYKVF QVRVSFVKDVQKQEAMWERQHELAADKIYAMCSDLGGFFLKVAQIIGKPDLAPAAWVK RLVTLCDQAPATPFDAVKFVLEKELGRSVGDIFEKFDVNPLGSASIAQVHRARLRGDK SDVVVKVQHPGIQDLMMTDIHNLQAFALYIQKTDIKFDLYSVTKEMEKQIGYEFDFLR EANAMERIRHFLYKNNKKSPVLIPRALQDLVTRRVLVMEYIDGIPILNLGDEMAKRGI NPGGKMAAAAKQNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVK DLPDQLRLGYANLVLAMADNDPVKAAESYRELGIETVSNCENEQQELLRLAQTMFDTK LPPGVVMLQPFSEDSSIKKVGVQSFPEELFSVLRTVHLLRGLSVGLGINYSCAEQWRA IAEEALYDAGRLKGANQKTKVRKWGSFRRLFRRD" gene 23244269..23245639 /locus_tag="TCM_014572" /note="dbxref CacaoGD:Thecc1EG014572" mRNA join(23244269..23244500,23244693..23245639) /locus_tag="TCM_014572" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene22704" /inference="similar to AA sequence:frave:gene22704" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5184t1" CDS join(23244401..23244500,23244693..23245123) /locus_tag="TCM_014572" /note="dbxref frave:gene22704" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22395.1" /translation="MLGRVRASPSPSPLDSLETPPSKIIKDDSLSIYEATLMKLKLGS QRCLISPSTVTVTETETVTETTTDLSSEAMKVEATCTSGTGFKSCPDISSGEEVMMME TDCSSASVSNSSSDCQSTGNLSSQQQSTSVSILYLFSKFKGYQRVPTSTISHEAMMME NEGSARFSSSSVSNLE" gene complement(23246103..23248517) /locus_tag="TCM_014573" /note="dbxref CacaoGD:Thecc1EG014573" mRNA complement(join(23246103..23246328,23246750..23246799, 23246893..23247005,23247092..23247172,23247673..23247759, 23247994..23248050,23248155..23248517)) /locus_tag="TCM_014573" /product="Nucleoside diphosphate kinase 2, IA IA,NDPK IA,ATNDPK2" /inference="alignment:exonerate-protein:2:frave:gene22703" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016473t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s09540.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05215t00001_C1" CDS complement(join(23246261..23246328,23246750..23246799, 23246893..23247005,23247092..23247172,23247673..23247759, 23247994..23248050,23248155..23248412)) /locus_tag="TCM_014573" /note="paralog of Thecc1EG016473t1" /codon_start=1 /product="Nucleoside diphosphate kinase 2, IA IA,NDPK IA,ATNDPK2" /protein_id="EOY22396.1" /db_xref="Phytozome:POPTR_0012s09540.1" /db_xref="TAIR:AT5G63310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64903" /translation="MEAVALSLSSTTSYLGIPATAATAKRGSSTCLPYAPSNNFNVRH LAAFHKQSHLFTKSPARPFLYTKSYARQSTHGIFLPHLVASLEQVEQTYIMVKPDGVQ RGLVGEIISRFETKGFKLTGLKLFQCPKELAEEHYKDLKAKPFYPSLIDYITSGPVVC MAWEGVGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVIHGSDSPENGKRETALW FKEGELCEWTPVQTPWLRE" gene complement(23249707..23251704) /locus_tag="TCM_014574" /note="dbxref CacaoGD:Thecc1EG014574" mRNA complement(23249707..23251704) /locus_tag="TCM_014574" /product="GRAS family transcription factor" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010708t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10310.1" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS complement(23249982..23251541) /locus_tag="TCM_014574" /note="paralog of Thecc1EG010708t1" /codon_start=1 /product="GRAS family transcription factor" /protein_id="EOY22397.1" /db_xref="Phytozome:POPTR_0015s10310.1" /db_xref="TAIR:AT1G66350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF61" /translation="MGHGFLANEFQKTDRIDEVIGLDLELSAMAFCYQPFMPIMGDNA CGWSLPFSGEIRDTKRLRRTISIPESIGSSGSLSSGGNSDSSLSRSGSTSSLNSFSRL HFRDHVLTYNQRYLAAEAVEEAAAAMISSEESGGEEDETADGMRLVQLLIACAEAVAC RDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLALVQPLGTVGLVAPVMNIM DISSDKKEEALRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPHGHQ WRHLIQSLANRAGKAPSRLRITAVGLSDHRFHIIGQELEAYAKDLGMNLEFSVVKSNL ENLRPEDIKVFDGEVLVVNSILQLHCVVKESRGALNSVLQMIHELSPKVLVLVEQDSS HNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEEIKNIVSCEGPGR VERHERVDQWRRRMSRAGFQAAPLRMMTQAKQWLGKNKVCEGYTVVEDKGCLVLGWKS KPIVAASCWKC" gene 23258882..23260480 /locus_tag="TCM_014575" /note="dbxref CacaoGD:Thecc1EG014575" mRNA join(23258882..23259468,23260312..23260480) /locus_tag="TCM_014575" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014578t1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(23259017..23259468,23260312..23260441) /locus_tag="TCM_014575" /note="paralog of Thecc1EG014578t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22398.1" /translation="MEAQVATDMSTVFKEPESTNLLLPLLPCDPLGRFSEPSAKVMVA IQVSFFACGGITICACVDHVVADVAATATFLKIWAAVACGANDIDNDLICNRTSVCPS LDLSGFWKQFVDENKDKKVLTKRLLFDGSKIASLRNEIGNGLCSYRLSSSWCRIPFYE TDFGWGKPIRTAIALGMERVVFFLDTKDGEGIE" mobile_element 23260078..23260244 /note="source:CACAO_Again_on_E14_scaffold_1 11063 11247" /mobile_element_type="transposon:TIR/hAT" mobile_element 23262705..23263830 /note="source:CACAO_M_S_E51998_F88_scaffold_5 2842 3967" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23263931..23265900) /note="source:INTACT584_F15_scaffold_3-int 1 1973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23267280..23269131) /note="source:CACAO_M_E12297_F14_scaffold_3 6342 8186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23272475..23272522 /note="source:INTACT296_F13_scaffold_9-int 13201 13248" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23273549..23274270 /locus_tag="TCM_014576" /note="dbxref CacaoGD:Thecc1EG014576" mRNA 23273549..23274270 /locus_tag="TCM_014576" /product="3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014579t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01190.1" /note="quality class is medium, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.64 coverage" CDS 23273750..23273980 /locus_tag="TCM_014576" /note="paralog of Thecc1EG014579t1" /codon_start=1 /product="3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative" /protein_id="EOY22399.1" /db_xref="Phytozome:POPTR_0006s01190.1" /translation="MFGFTSWCRFPFYETDFGWGKPIWLGTALRFNRAAFFLDTRDGE GIEAWITLTQKEMAKLEQDPDILAHASFKPSC" mobile_element 23280628..23282374 /note="source:CACAO_M_E22918_F3_scaffold_3 1 1747" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23282375..23282507 /note="source:scaffold_7_CACTA_0789 8791 8928" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23283787..23284357 /note="source:CACAO_M_S_E4413_F3_scaffold_1 1841 2413" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23286304..23286648) /note="source:CACAO_Mariner_E38_scaffold_2 4572 4930" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(23286902..23287016) /note="source:CACAO_Mariner_E38_scaffold_2 2256 2370" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 23289971..23291681 /locus_tag="TCM_014578" /note="dbxref CacaoGD:Thecc1EG014578" mRNA join(23289971..23290070,23290149..23291681) /locus_tag="TCM_014578" /product="3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m013790" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014579t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01190.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5173t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5171t1" CDS join(23290055..23290070,23290149..23291467) /locus_tag="TCM_014578" /note="paralog of Thecc1EG014579t1" /codon_start=1 /product="3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative" /protein_id="EOY22400.1" /db_xref="Phytozome:POPTR_0006s01190.1" /db_xref="TAIR:AT3G26040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAL8" /translation="MQCPPEAIDWFHLSKLEMEIQIISRETIKPSSPTPHHLRTHKLS LLDQLVPPVNIPVLLFYSATAENPRKRSLQLKESLSKTLVHFYTFAGRLSESFSIDCN DNGATYIEAQVAIDMSVVLKEPEIDLLLQLLPCDPHENLAEPSAQVVLSIQVNYFACG GMAICVCVHHAVADASAVATFLQSWAAVACGANLTDTETFDCTSLFPRQDLSGFWEVL EENKDLIIREDVVTTRFLFDRSKIDVLRDEIGNGSSLYRPTRVEAVSALIWNAMVASI AEYDKTIPIYVATSVNLRKRMNFPFPQKCVANVSQFIMTELPIEKTKNLSNLAGNLHD SITKVDDEYVRKLHAGGAYLNIMKGAIKGFGKNWIFSFSSWCRFPFYETDFGWGKPIW FGTTLRLNRVAFFLDTNDGGGIEAWITLTQEEMVKLEQDTGILDYATFKPST" gene 23296481..23300875 /locus_tag="TCM_014579" /note="dbxref CacaoGD:Thecc1EG014579" mRNA join(23296481..23298226,23300817..23300875) /locus_tag="TCM_014579" /product="3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014578t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01190.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 23296671..23297975 /locus_tag="TCM_014579" /note="paralog of Thecc1EG014578t1" /codon_start=1 /product="3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative" /protein_id="EOY22401.1" /db_xref="Phytozome:POPTR_0006s01190.1" /db_xref="TAIR:AT3G26040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAL8" /translation="MEMKVHIISRETIKPSSPTPHHQRTHKLSLFDQLAPPLYIPILL FYSATSETNPSKKSDLLKDSLSKILTHFYPFAGRVKEGCTIDCNDDGAAYVEAQVDSD MFLVLKEPGIDLLLQLLPCEPLEKLPEPSAQVILAVQVNYFACGGMAICVCLRHVVSD ASAAAGFVKSWAAVASGVDMVLDAVIYDCTSLFPPQDLSGLWKTIEKSQNALLAEVVT KRFIFYGSKIAALRNEIGNGLSLYRPTRVEALSSLIWNAIIAGDTEEGEIVPMHVATT AVNLRKRMNPPLPQLCMGNISHVTMANLFMAKTKSRNSLAEKIHESILKIDDKFVRQF FGSGAHLNVMKNMAAELGKSSKARLFNFSSWCRFPFYETDFGWGKPVWFATALRLNKL AIFLDTRDGKGIEAWIGLTKEEMTKLERDPGILAYASFNPSI" gene complement(23300843..23302317) /locus_tag="TCM_014580" /note="dbxref CacaoGD:Thecc1EG014580" mRNA complement(23300843..23302317) /locus_tag="TCM_014580" /product="Anthranilate N-benzoyltransferase protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m013786" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010714t1" /inference="similar to AA sequence:ricco:30147.m013786" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5175t1" CDS complement(23300951..23302249) /locus_tag="TCM_014580" /note="dbxref ricco:30147.m013786; paralog of Thecc1EG010714t1" /codon_start=1 /product="Anthranilate N-benzoyltransferase protein, putative" /protein_id="EOY22402.1" /db_xref="TAIR:AT1G24430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAL2" /translation="MTIIDIQIVSKETIKPAIPTPHHLRNLKLSFLDQLAPPIYIPIV LFYPAKQNVDLLERSLLLKKSLSKTLTQFYPLAGTMREDFTFECNDEGVEYFETKVPC KLVDVTENPDVNVLNLFLPFEPQQNCIESKKQVPLAIQYNIFKCGGVAIGIRLSHLIA DGTSVITFVNAWAAMSREPGEVIIPIFEAATHFPPRDISMFRPSIGITKEKIVTKRFV FDKPSITVLREKASSRDGSQVKTPTRVEAISSFIWSRQMAIAKTKPERAKLYAAVHAV NLRERMVPSLPKHSFGNFWRMAIATFPAEMEQDYHVLVSHMRNAISKIDNNYVKMLQD GDRYLKTMKMVSEQFSKSEVEFCNFTSWCRFPVYEVDFGWGKPAWACSPSRPYKNLVI LMSDKGGEGVEAWVNLLEEDMAIFERDPELLSFASSKTGK" mobile_element 23302971..23303089 /note="source:CACAO_on_E33_A_scaffold_3 7600 7737" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23303133..23303394) /note="source:CACAO_on_E33_A_scaffold_3 11321 11499" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23306877..23307368) /note="source:scaffold_2_CACTA_0256 17366 17868" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23307134..23307533 /note="source:CACAO_Again_on_E205_scaffold_9 8331 8776" /mobile_element_type="transposon:TIR/hAT" gene complement(23310986..23311834) /locus_tag="TCM_014581" /note="dbxref CacaoGD:Thecc1EG014581" mRNA complement(23310986..23311834) /locus_tag="TCM_014581" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g13690.1" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3437t1" CDS complement(23311505..23311726) /locus_tag="TCM_014581" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22403.1" /translation="MVSKVEEAMKRQQQSQQHSHKGRDHCHQQQLQKQIQCNKGKTPK FKRSSSNLEEDGASSAILLLACIACTPSY" gene complement(23313297..23316157) /locus_tag="TCM_014582" /note="dbxref CacaoGD:Thecc1EG014582" mRNA complement(join(23313297..23313960,23314194..23314299, 23316031..23316157)) /locus_tag="TCM_014582" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is weak, protein is utrpoor_complete" CDS complement(join(23313957..23313960,23314194..23314299, 23316031..23316118)) /locus_tag="TCM_014582" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22404.1" /translation="MKGNLRLGVKSISSILVPNKKKCFFFFKKGFQMSKTNHYTDSKF SSIFCDLDSSINYNDWFLTLR" gene 23320069..23325005 /locus_tag="TCM_014583" /note="dbxref CacaoGD:Thecc1EG014583" mRNA join(23320069..23320176,23320276..23320299, 23320402..23320502,23320628..23320743,23320840..23320939, 23321190..23321336,23321421..23321481,23321561..23321658, 23321937..23322079,23323591..23323674,23323988..23324077, 23324252..23325005) /locus_tag="TCM_014583" /product="Glyceraldehyde-3-phosphate dehydrogenase C subunit 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010757t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007521001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09691t00001" CDS join(23320173..23320176,23320276..23320299, 23320402..23320502,23320628..23320743,23320840..23320939, 23321190..23321336,23321421..23321481,23321561..23321658, 23321937..23322079,23323591..23323674,23323988..23324077, 23324252..23324297) /locus_tag="TCM_014583" /note="paralog of Thecc1EG010757t1" /codon_start=1 /product="Glyceraldehyde-3-phosphate dehydrogenase C subunit 1" /protein_id="EOY22405.1" /db_xref="Phytozome:GSVIVT01007521001" /db_xref="TAIR:AT3G04120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HQT1" /translation="MAKVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMT YMFRYDSVHGQWKHNELKVKDSKTLLFGEKPVTVFGIRNPEEIPWGETGAEYIVESTG VFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPEYDIISNASCTTNCLA PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA VGKVLPALNGKLTGMAFRVPTVNVSVVDLTVRLEKAASYEEIKAAIKEASEGELKGIL GYTEEDLVSTDLVGDSRSSIFDAKAGIALNEKFAKLVSWYDNEWGYSSRIIDLIVHVS KTK" mobile_element complement(23324846..23327788) /note="source:CACAO_Mutator_E1149_scaffold_5 355 3296" /mobile_element_type="transposon:TIR/Mutator" gene 23328174..23333160 /locus_tag="TCM_014584" /note="dbxref CacaoGD:Thecc1EG014584" mRNA join(23328174..23329255,23330046..23330210, 23330409..23330507,23330604..23330705,23330824..23330943, 23331499..23331636,23331813..23332103,23332281..23333160) /locus_tag="TCM_014584" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene22700" /inference="similar to AA sequence:Phytozome:POPTR_0012s09580.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05083t00001" mRNA join(23328302..23329255,23330046..23330210, 23330409..23330507,23330604..23330705,23330824..23330943, 23331499..23331636,23331813..23331920,23332279..23332730) /locus_tag="TCM_014584" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene22700" /inference="similar to AA sequence:frave:gene22700" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1379t3_C1; inference alignment:Newbler:10:TSA:cgbaB_g05083t00001" CDS join(23328761..23329255,23330046..23330210, 23330409..23330507,23330604..23330705,23330824..23330943, 23331499..23331636,23331813..23332103,23332281..23332574) /locus_tag="TCM_014584" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22406.1" /db_xref="Phytozome:POPTR_0012s09580.1" /translation="MATSAFKSTTKRTSLANSTGDSSSSNRTSVHRRARSLSRFSSRL PGADDDEEPTPAPRSRGRFVNTVRGSGFPEISLDDLAIELFDSSPRGRSASRNADVSP RNGEGGKGGGESATQRRGRSVSRQGSRGSFVNSGGGGRLTSDTANSRRRRSVSVVRYQ ISDSESDLDNSHNSSNRASVRSSIGGNQISSTHKPTALNDRQGLRRTLSQKDLKYHDG YSSHSSALTDDEGRDALSSKNGMERTIRAVYAQKKGEHPTGDDMNGGLYAAMRKELRH AVEEIKTQLEKAMVKTEKSGIASDYSLQSDNSDVLQAVSTIRRKCTTKFEKSEKRRQD LLAEILLEEQHERELSKIVKELLPEPKNSSVEKPLRARKRSNDRTRMSKQLTEEAEKY IEDFISNVEDTDISSLDGDRSDTSSSIGGMTKTPTFQSPAVFKSVPVEMDGVMLPWLQ WETSNDTSPLSCKNKRNPSQEASSAQDICNQFTSSRGSCSPAFTDCPSVSIGEDTGTK FGQPGSYQSQFSSNGNNAMRFDVDDYLNLKSNEAFLHEIWSQRHRISSGGLLLCNQMF F" CDS join(23328761..23329255,23330046..23330210, 23330409..23330507,23330604..23330705,23330824..23330943, 23331499..23331636,23331813..23331920,23332279..23332368) /locus_tag="TCM_014584" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene22700" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY22407.1" /translation="MATSAFKSTTKRTSLANSTGDSSSSNRTSVHRRARSLSRFSSRL PGADDDEEPTPAPRSRGRFVNTVRGSGFPEISLDDLAIELFDSSPRGRSASRNADVSP RNGEGGKGGGESATQRRGRSVSRQGSRGSFVNSGGGGRLTSDTANSRRRRSVSVVRYQ ISDSESDLDNSHNSSNRASVRSSIGGNQISSTHKPTALNDRQGLRRTLSQKDLKYHDG YSSHSSALTDDEGRDALSSKNGMERTIRAVYAQKKGEHPTGDDMNGGLYAAMRKELRH AVEEIKTQLEKAMVKTEKSGIASDYSLQSDNSDVLQAVSTIRRKCTTKFEKSEKRRQD LLAEILLEEQHERELSKIVKELLPEPKNSSVEKPLRARKRSNDRTRMSKQLTEEAEKY IEDFISNVEDTDISSLDRKHPLHKIYAINLPAAVGVVARHLLIALQ" gene 23332671..23342317 /locus_tag="TCM_014585" /note="dbxref CacaoGD:Thecc1EG014585" mRNA join(23332671..23332931,23339894..23340086, 23340384..23340767,23340858..23341251,23341338..23341443, 23341584..23341675,23341777..23341845,23341938..23342317) /locus_tag="TCM_014585" /product="Lysine histidine transporter 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013781" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017089t1" /inference="similar to AA sequence:ricco:30147.m013781" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5210t1" CDS join(23332850..23332931,23339894..23340086, 23340384..23340767,23340858..23341251,23341338..23341443, 23341584..23341675,23341777..23341845,23341938..23342036) /locus_tag="TCM_014585" /note="dbxref ricco:30147.m013781; paralog of Thecc1EG017089t1" /codon_start=1 /product="Lysine histidine transporter 1" /protein_id="EOY22408.1" /db_xref="TAIR:AT5G40780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS86" /translation="MENGLEATQGFKQVYSSPHQIPIIEGVVGEQGGMETQPETQDSS SKAETLNDWLPITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSELGWGAGTVIMVLS WVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLWVVVPQQLMVEVGVNIVY MVTGGKSLKKFHDTVCPNCTDIRTTYFIMIFASVHFVLSHLPSFNSITAVSFAAAIMS FSYSTIAWVASIHKGVQPSVEYIERASTSAGQVFGFFSALGDVAFAFAGHNVVLEIQA TIPSTPEKPSKKPMWKGVIVAYIVVALCYFPVSFIGYWVFGNSVEDNILISLEKPAWL VATANLFVVIHVIGSYQVFAMPVFDMAESYLVKRMHFTPSLMLRIITRTSYVALTMFL GMTFPFFGGLLSFFGGFAFAPTSYYLPCIIWLAIYKPKRFSLSWITNWTCIIVGVLLM ILAPIGALRQLILQSKNFKFYS" mobile_element complement(23336527..23337908) /note="source:CACAO_M_E69946_F329_scaffold_9 1 1447" /mobile_element_type="retrotransposon:LTR/Copia" gene 23342384..23348543 /locus_tag="TCM_014586" /note="dbxref CacaoGD:Thecc1EG014586" mRNA join(23342384..23343211,23343633..23343692, 23343816..23343845,23343944..23344017,23344631..23344712, 23344854..23344927,23345086..23345152,23345676..23345768, 23346086..23346262,23346339..23346389,23346862..23347013, 23347907..23348543) /locus_tag="TCM_014586" /product="Nucleic acid-binding, OB-fold-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026749" /inference="similar to AA sequence:Phytozome:POPTR_0015s10360.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04714t00001" mRNA join(23342384..23343211,23343633..23343692, 23343816..23343845,23343944..23344017,23344631..23344712, 23344854..23344927,23345086..23345152,23345676..23345768, 23346086..23346489) /locus_tag="TCM_014586" /product="Nucleic acid-binding, OB-fold-like protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026749" /inference="similar to AA sequence:frave:gene06392" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:PASA:2:TSA:puevd3b014093t1a3; inference alignment:Newbler:10:TSA:cgbaB_g04714t00001" CDS join(23342468..23343211,23343633..23343692, 23343816..23343845,23343944..23344017,23344631..23344712, 23344854..23344927,23345086..23345152,23345676..23345768, 23346086..23346262,23346339..23346389,23346862..23347013, 23347907..23348336) /locus_tag="TCM_014586" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nucleic acid-binding, OB-fold-like protein isoform 1" /protein_id="EOY22409.1" /db_xref="Phytozome:POPTR_0015s10360.1" /db_xref="TAIR:AT3G48500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JF21" /translation="MQILQTPHFFSFPKPLNLSAPKPCSHPHHLPCFPSLLKTHFPKP WTTPKSFSSDEFPVDETFLENFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFAR KSLNEGEEVPLQTPEAIEAFKMLKPSYRLQKMKEMGITEDEWYRKQFEIKGEIPDPLE TLWAGPLALRHVPPRDWPPSGWEVDREELEFMREVHKLQAVRVDLEKVEKEAITGEAN MGLDRYKVFLKQYKEWVDANKDRLEEESYKYDQDYHPGRRKRGKDYNEDMYELPFYYP GQICEGKVTTLHLYQGAFVDIGGVYEGWVPIKGNDWFWIRHHIKVGMHVIVEILAKRD PYRFRFPIEMRFVHPNIDHLVFNRFDFPPIFHRDEDTNPDELRRDCGRPPVPKKHPGT KPEEEPLLSNHPYVDKLWQIHVAEQMILDDMEANPEKYKGKKLSELTDDDDYDDENNV QYTKAYYKKSLIPKMILKTSVKELDLEAALAERELHNKLRSEAKERGEEYKISKFRRN IEMDEYDFIHWRRSFEEREALIRDISCRQALGLPLEEPGRYKDASYFGKDQYDPSNPL YRYDYWGEPKNSEKSKRERMTDAHNKSIVGKGTVWYEMSYDDAIKQKMQREARSKGTM QKEADEDEKRQQDSDDEDFDYSILSESSLGFPNQPLVNGTESSSITDGGMFEN" CDS join(23342468..23343211,23343633..23343692, 23343816..23343845,23343944..23344017,23344631..23344712, 23344854..23344927,23345086..23345152,23345676..23345768, 23346086..23346319) /locus_tag="TCM_014586" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene06392" /codon_start=1 /product="Nucleic acid-binding, OB-fold-like protein isoform 2" /protein_id="EOY22410.1" /db_xref="TAIR:AT3G48500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JF21" /translation="MQILQTPHFFSFPKPLNLSAPKPCSHPHHLPCFPSLLKTHFPKP WTTPKSFSSDEFPVDETFLENFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFAR KSLNEGEEVPLQTPEAIEAFKMLKPSYRLQKMKEMGITEDEWYRKQFEIKGEIPDPLE TLWAGPLALRHVPPRDWPPSGWEVDREELEFMREVHKLQAVRVDLEKVEKEAITGEAN MGLDRYKVFLKQYKEWVDANKDRLEEESYKYDQDYHPGRRKRGKDYNEDMYELPFYYP GQICEGKVTTLHLYQGAFVDIGGVYEGWVPIKGNDWFWIRHHIKVGMHVIVEILAKRD PYRFRFPIEMRFVHPNIDHLVFNRFDFPPIFHRDEDTNPDELRRDCGRPPVPKKHPGT KPEEEPLLSNHPYVDKLWQIHVAEQMILDDMEANPEKYKGKKLSELTDDDDYDDENNV QYTKAYYKKSLIPKMILVSLFFFFYSPTYLPRSTF" gene complement(23347806..23354509) /locus_tag="TCM_014587" /note="dbxref CacaoGD:Thecc1EG014587" mRNA complement(join(23347806..23349437,23349519..23349649, 23349787..23349853,23349948..23350063,23350316..23350385, 23350544..23350602,23351931..23352089,23352189..23352237, 23352336..23354000)) /locus_tag="TCM_014587" /product="Bromodomain-containing protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026659" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017092t4" /inference="similar to AA sequence:ricco:30147.m013776" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5291t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5291t2" mRNA complement(join(23347806..23349437,23349519..23349649, 23349787..23349853,23349948..23350063,23350135..23350215, 23350316..23350385,23350544..23350602,23351931..23352089, 23352189..23352237,23352336..23354000)) /locus_tag="TCM_014587" /product="Nuclear protein X1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026659" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017092t4" /inference="similar to AA sequence:ricco:30147.m013776" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5291t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5291t2" mRNA complement(join(23348596..23349437,23349519..23349649, 23349787..23349853,23349948..23350063,23350135..23350215, 23350316..23350385,23350529..23350602,23351931..23352089, 23352189..23352237,23352336..23353726,23353825..23354389)) /locus_tag="TCM_014587" /product="Nuclear protein X1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026659" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017092t4" /inference="similar to AA sequence:ricco:30147.m013776" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5291t2" CDS complement(join(23349162..23349437,23349519..23349649, 23349787..23349853,23349948..23350063,23350316..23350385, 23350544..23350602,23351931..23352089,23352189..23352237, 23352336..23353658)) /locus_tag="TCM_014587" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m013776; paralog of Thecc1EG017092t4" /codon_start=1 /product="Bromodomain-containing protein, putative isoform 4" /protein_id="EOY22414.1" /db_xref="TAIR:AT5G63320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAK3" /translation="MAPAIPIEYTGQKEYKKCSFSQLMGKSRKYSKGGNSSGFVPDYR HVVETMGGSEGFGSFGQVDTEMTASEDSGAPKRKCISLNADSYGNFGVPTQVLSLSKM SRPERKDLELRLKMELEQVRVLQKKVASLDMSVVGLSLSTNNKSCNDGKKRPPVESFR QSAGVLSLQGRKRPFGGRNGACIKKSMSKRFETVKPTVTVSNSNAHLMKQCETLLNRL MQHNFGWVFNNPVDVVKLNIPDYLTVIKQPMDLGTVKKRLASGQYLSPLDFAADVRLT FSNALTYNPPGNDVHYMAETLSKYFEVRWKAIEKKLPVTMDIDAVPSTATAPIKVEKN SGSLPFKKKTINPKDTMIKPDPVRQIMTDQERHNLSAELEALLGELPENIVDFLKEQS SSEGLMEDEIEIDIDALSGETLFKLRKLLDDYLLEKQKNQEKAEPCEMELHNESGFSN SSMQPCRGNDQVDEDVDVVGGNDHPTSSCPPVEIEKDLTRRNSRCSSSSSSSSESGSS SSESDSGSSSGSESDAVKASVPENLDSGTNVDSKNGSIAVPKDGNQESAPAERQVSPE KLYRAAVLRKRFADTILKAREKALEKGEKGDPEKLRMEREELERWQREEKARLQVEAK AAEEARIKAEAEAAAEAKRKRELEREAARQALLKMEKTVDINGNSQFMEDFEMLRTSN DEHLPNFMEETSPSHSQNGLGSFKLQGRSNPLEQLGLYMKADDEDEEDEPPQSAPEPV NDVEEGEID" CDS complement(join(23349162..23349437,23349519..23349649, 23349787..23349853,23349948..23350063,23350135..23350215, 23350316..23350385,23350544..23350602,23351931..23352089, 23352189..23352237,23352336..23353658)) /locus_tag="TCM_014587" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013776; paralog of Thecc1EG017092t4" /codon_start=1 /product="Nuclear protein X1 isoform 2" /protein_id="EOY22412.1" /db_xref="TAIR:AT5G63320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAK3" /translation="MAPAIPIEYTGQKEYKKCSFSQLMGKSRKYSKGGNSSGFVPDYR HVVETMGGSEGFGSFGQVDTEMTASEDSGAPKRKCISLNADSYGNFGVPTQVLSLSKM SRPERKDLELRLKMELEQVRVLQKKVASLDMSVVGLSLSTNNKSCNDGKKRPPVESFR QSAGVLSLQGRKRPFGGRNGACIKKSMSKRFETVKPTVTVSNSNAHLMKQCETLLNRL MQHNFGWVFNNPVDVVKLNIPDYLTVIKQPMDLGTVKKRLASGQYLSPLDFAADVRLT FSNALTYNPPGNDVHYMAETLSKYFEVRWKAIEKKLPVTMDIDAVPSTATAPIKVEKN SGSLPFKKKTINPKDTMIKPDPVRQIMTDQERHNLSAELEALLGELPENIVDFLKEQS SSEGLMEDEIEIDIDALSGETLFKLRKLLDDYLLEKQKNQEKAEPCEMELHNESGFSN SSMQPCRGNDQVDEDVDVVGGNDHPTSSCPPVEIEKDLTRRNSRCSSSSSSSSESGSS SSESDSGSSSGSESDAVKASVPENLDSGTNVDSKNGSIAVPKDGNQSLNELGQVELKF HDKPSAIEAEGHQDEESAPAERQVSPEKLYRAAVLRKRFADTILKAREKALEKGEKGD PEKLRMEREELERWQREEKARLQVEAKAAEEARIKAEAEAAAEAKRKRELEREAARQA LLKMEKTVDINGNSQFMEDFEMLRTSNDEHLPNFMEETSPSHSQNGLGSFKLQGRSNP LEQLGLYMKADDEDEEDEPPQSAPEPVNDVEEGEID" CDS complement(join(23349162..23349437,23349519..23349649, 23349787..23349853,23349948..23350063,23350135..23350215, 23350316..23350385,23350529..23350602,23351931..23352089, 23352189..23352237,23352336..23353658)) /locus_tag="TCM_014587" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013776; paralog of Thecc1EG017092t4" /codon_start=1 /product="Nuclear protein X1 isoform 1" /protein_id="EOY22411.1" /db_xref="TAIR:AT5G63320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAK3" /translation="MAPAIPIEYTGQKEYKKCSFSQLMGKSRKYSKGGNSSGFVPDYR HVVETMGGSEGFGSFGQVDTEMTASEDSGAPKRKCISLNADSYGNFGVPTQVLSLSKM SRPERKDLELRLKMELEQVRVLQKKVASLDMSVVGLSLSTNNKSCNDGKKRPPVESFR QSAGVLSLQGRKRPFGGRNGACIKKSMSKRFETVKPTVTVSNSNAHLMKQCETLLNRL MQHNFGWVFNNPVDVVKLNIPDYLTVIKQPMDLGTVKKRLASGQYLSPLDFAADVRLT FSNALTYNPPGNDVHYMAETLSKYFEVRWKAIEKKLPVTMDIDAVPSTATAPIKVEKN SGSLPFKKKTINPKDTMIKPDPVRQIMTDQERHNLSAELEALLGELPENIVDFLKEQS SSEGLMEDEIEIDIDALSGETLFKLRKLLDDYLLEKQKNQEKAEPCEMELHNESGFSN SSMQPCRGNDQVDEDVDVVGGNDHPTSSCPPVEIEKDLTRRNSRCSSSSSSSSESGSS SSESDSGSSSGSESDAVKASVPVSSVKENLDSGTNVDSKNGSIAVPKDGNQSLNELGQ VELKFHDKPSAIEAEGHQDEESAPAERQVSPEKLYRAAVLRKRFADTILKAREKALEK GEKGDPEKLRMEREELERWQREEKARLQVEAKAAEEARIKAEAEAAAEAKRKRELERE AARQALLKMEKTVDINGNSQFMEDFEMLRTSNDEHLPNFMEETSPSHSQNGLGSFKLQ GRSNPLEQLGLYMKADDEDEEDEPPQSAPEPVNDVEEGEID" mRNA complement(join(23349519..23349853,23349948..23350063, 23350135..23350215,23350316..23350385,23350529..23350602, 23351931..23352089,23352189..23352237,23352336..23354509)) /locus_tag="TCM_014587" /product="Nuclear protein X1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026659" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017092t2" /inference="similar to AA sequence:ricco:30147.m013776" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1165t16; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5291t2" mRNA complement(join(23349626..23349649,23349787..23349853, 23349948..23350063,23350135..23350385,23350529..23350602, 23351931..23352089,23352189..23352237,23352336..23354509)) /locus_tag="TCM_014587" /product="Nuclear protein X1 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026659" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017092t9" /inference="similar to AA sequence:Phytozome:POPTR_0012s09600.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1165t15; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5291t2" CDS complement(join(23349734..23349853,23349948..23350063, 23350135..23350215,23350316..23350385,23350529..23350602, 23351931..23352089,23352189..23352237,23352336..23353658)) /locus_tag="TCM_014587" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m013776; paralog of Thecc1EG017092t2" /codon_start=1 /product="Nuclear protein X1 isoform 3" /protein_id="EOY22413.1" /db_xref="TAIR:AT5G63320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAK3" /translation="MAPAIPIEYTGQKEYKKCSFSQLMGKSRKYSKGGNSSGFVPDYR HVVETMGGSEGFGSFGQVDTEMTASEDSGAPKRKCISLNADSYGNFGVPTQVLSLSKM SRPERKDLELRLKMELEQVRVLQKKVASLDMSVVGLSLSTNNKSCNDGKKRPPVESFR QSAGVLSLQGRKRPFGGRNGACIKKSMSKRFETVKPTVTVSNSNAHLMKQCETLLNRL MQHNFGWVFNNPVDVVKLNIPDYLTVIKQPMDLGTVKKRLASGQYLSPLDFAADVRLT FSNALTYNPPGNDVHYMAETLSKYFEVRWKAIEKKLPVTMDIDAVPSTATAPIKVEKN SGSLPFKKKTINPKDTMIKPDPVRQIMTDQERHNLSAELEALLGELPENIVDFLKEQS SSEGLMEDEIEIDIDALSGETLFKLRKLLDDYLLEKQKNQEKAEPCEMELHNESGFSN SSMQPCRGNDQVDEDVDVVGGNDHPTSSCPPVEIEKDLTRRNSRCSSSSSSSSESGSS SSESDSGSSSGSESDAVKASVPVSSVKENLDSGTNVDSKNGSIAVPKDGNQSLNELGQ VELKFHDKPSAIEAEGHQDEESAPAERQVSPEKLYRAAVLRKRFADTILKAREKALEK GEKGDPEKLRMEREELERWQREGLEFVSLLKCFPALMFL" mRNA complement(join(23350035..23350215,23350316..23350385, 23350529..23350602,23351931..23352089,23352189..23352237, 23352336..23354509)) /locus_tag="TCM_014587" /product="Nuclear protein X1 isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026659" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017092t2" /inference="similar to AA sequence:ricco:30147.m013776" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc497t15; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5291t2" CDS complement(join(23350121..23350215,23350316..23350385, 23350529..23350602,23351931..23352089,23352189..23352237, 23352336..23353658)) /locus_tag="TCM_014587" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30147.m013776; paralog of Thecc1EG017092t2" /codon_start=1 /product="Nuclear protein X1 isoform 6" /protein_id="EOY22416.1" /db_xref="TAIR:AT5G63320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAK3" /translation="MAPAIPIEYTGQKEYKKCSFSQLMGKSRKYSKGGNSSGFVPDYR HVVETMGGSEGFGSFGQVDTEMTASEDSGAPKRKCISLNADSYGNFGVPTQVLSLSKM SRPERKDLELRLKMELEQVRVLQKKVASLDMSVVGLSLSTNNKSCNDGKKRPPVESFR QSAGVLSLQGRKRPFGGRNGACIKKSMSKRFETVKPTVTVSNSNAHLMKQCETLLNRL MQHNFGWVFNNPVDVVKLNIPDYLTVIKQPMDLGTVKKRLASGQYLSPLDFAADVRLT FSNALTYNPPGNDVHYMAETLSKYFEVRWKAIEKKLPVTMDIDAVPSTATAPIKVEKN SGSLPFKKKTINPKDTMIKPDPVRQIMTDQERHNLSAELEALLGELPENIVDFLKEQS SSEGLMEDEIEIDIDALSGETLFKLRKLLDDYLLEKQKNQEKAEPCEMELHNESGFSN SSMQPCRGNDQVDEDVDVVGGNDHPTSSCPPVEIEKDLTRRNSRCSSSSSSSSESGSS SSESDSGSSSGSESDAVKASVPVSSVKENLDSGTNVDSKNGSIAVPKDGNQSLNELGQ VELKFHDKPSAIEAEGHQDGKHN" CDS complement(join(23350245..23350385,23350529..23350602, 23351931..23352089,23352189..23352237,23352336..23353658)) /locus_tag="TCM_014587" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG017092t9" /codon_start=1 /product="Nuclear protein X1 isoform 5" /protein_id="EOY22415.1" /db_xref="Phytozome:POPTR_0012s09600.1" /db_xref="TAIR:AT5G63320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAK3" /translation="MAPAIPIEYTGQKEYKKCSFSQLMGKSRKYSKGGNSSGFVPDYR HVVETMGGSEGFGSFGQVDTEMTASEDSGAPKRKCISLNADSYGNFGVPTQVLSLSKM SRPERKDLELRLKMELEQVRVLQKKVASLDMSVVGLSLSTNNKSCNDGKKRPPVESFR QSAGVLSLQGRKRPFGGRNGACIKKSMSKRFETVKPTVTVSNSNAHLMKQCETLLNRL MQHNFGWVFNNPVDVVKLNIPDYLTVIKQPMDLGTVKKRLASGQYLSPLDFAADVRLT FSNALTYNPPGNDVHYMAETLSKYFEVRWKAIEKKLPVTMDIDAVPSTATAPIKVEKN SGSLPFKKKTINPKDTMIKPDPVRQIMTDQERHNLSAELEALLGELPENIVDFLKEQS SSEGLMEDEIEIDIDALSGETLFKLRKLLDDYLLEKQKNQEKAEPCEMELHNESGFSN SSMQPCRGNDQVDEDVDVVGGNDHPTSSCPPVEIEKDLTRRNSRCSSSSSSSSESGSS SSESDSGSSSGSESDAVKASVPVSSVKENLDSGTNVDSKNGSIAVPKDGNREFPILDY ASCMPPENLSWVNVL" gene complement(23353849..23358687) /locus_tag="TCM_014589" /note="dbxref CacaoGD:Thecc1EG014589" mRNA complement(join(23353849..23354629,23357264..23358687)) /locus_tag="TCM_014589" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10390.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10390.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5243t1" CDS complement(join(23354431..23354629,23357264..23358090)) /locus_tag="TCM_014589" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22417.1" /db_xref="Phytozome:POPTR_0015s10390.1" /db_xref="TAIR:AT5G50360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF68" /translation="MEGRGGCCIARYAAAGVYDMSKVNRIMLRFRPIAPKPATGGSVS PQKSSEAYPKSGRGKRRHSKENNMNNTKRCNRKRRVLSEEKRVTLPLLPETPDCKDSI SKEEKGGVVKKMVPLWLSFGQAADEKVDFLDGAARADRTAVMAAEARRVAGSCITVEC VTDTWVSGDGLGSTDEERKVNLVKDTCPGFISDGLGRVTWTNGAYKEMVGGEMMVWLV MKERLPMITYPAFTCRVRVQYTCGKERSSLTLPCDVWGMDGGGFAWRLDINAALCLGR FHRLNISTAGIRSIAAGDEAIGPLSREANSRAEPIIISVYSLSLSLFARTAKGRFVEE GVFSFSL" mobile_element 23361161..23361275 /note="source:scaffold_10_CACTA_0137 6922 7010" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23362926..23363151 /note="source:scaffold_5_CACTA_0614 3180 3423" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23362939..23363747) /note="source:scaffold_9_CACTA_0932 2786 3584" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23364439..23364524 /note="source:CACAO_on_E172_scaffold_5 366 463" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23364484..23364593) /note="source:scaffold_2_CACTA_0243 14629 14733" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23368697..23368855) /note="source:CACAO_Helitron_S_E29_scaffold_3 1097 1254" /mobile_element_type="transposon:Helitron" mobile_element complement(23369064..23369239) /note="source:CACAO_Mariner_E176_scaffold_6 2128 2298" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(23369083..23369930) /note="source:CACAO_MITE_S32_scaffold_2 1 891" /mobile_element_type="transposon:TIR/MITE" mobile_element 23372745..23372882 /note="source:scaffold_9_CACTA_0946 1696 1833" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23373012..23373949 /note="source:INTACT635_F280_scaffold_5-int 3 948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23374857..23374961 /note="source:scaffold_9_CACTA_0946 1625 1745" /mobile_element_type="transposon:TIR/CACTA" gene complement(23376829..23379822) /locus_tag="TCM_014591" /note="dbxref CacaoGD:Thecc1EG014591" mRNA complement(join(23376829..23377753,23377897..23378227, 23378440..23378765,23378848..23379822)) /locus_tag="TCM_014591" /product="Malate synthase, glyoxysomal" /inference="alignment:exonerate-protein:2:frave:gene06389" /inference="similar to AA sequence:ricco:30147.m013773" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04737t00001" CDS complement(join(23377097..23377753,23377897..23378227, 23378440..23378765,23378848..23379237)) /locus_tag="TCM_014591" /note="dbxref ricco:30147.m013773" /codon_start=1 /product="Malate synthase, glyoxysomal" /protein_id="EOY22418.1" /db_xref="TAIR:AT5G03860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P08216" /translation="MIGLGNYGFTAPAARKIDAYDVPEGVDIRGRFDEEFAKILTKDA LQFVADLQREFRNHINYAMGCRKEAKRRYNEGALPGFDPATRYIREGQWTCAPVPPAV ADRRVEITGPVERKMIINALNSGAKVFMADFEDALSPSWENLMRGQINLKDAVDGTIT FHDRARNRVYKLNDQIAKLFVRPRGWHLPEAHILIDGEPATGSLVDFGLYFYHNYAIF RKTQGEGFGPFFYLPKMEHSREAKIWNCVFERAEKMAGIEKGSIRATVLIETLPAVFQ MDEILYELRDHSVGLNCGRWDYIFSYVKTFQGHPDRLLPDRVQVGMTQHFMKSYSDLL IRTCHRRGVHAMGGMAAQIPIRDDPAANEAAFDLVRKDKLREVKAGHDGTWAAHPGLI QACMEVFTNNMGNAPNQIQTVKREDAANLTEEDLLQRPRGVRTMEGLRLNTRVGIQYL AAWLTGAGSVPLYNLMEDAATAEISRVQNWQWLKYGVELDGDGLGVRVNGDLFGRVVE EEMARIEREVGKDKFRKGMYKEAGKIFTRQCTAPTLDDFLTLDAYNHIVVHHPKGLSK L" gene 23379494..23384586 /locus_tag="TCM_014592" /note="dbxref CacaoGD:Thecc1EG014592" mRNA join(23379494..23379624,23380237..23380303, 23380613..23381987,23382090..23382225,23382313..23382401, 23382540..23382651,23382758..23382865,23382973..23383125, 23383193..23383315,23383489..23383560,23384199..23384586) /locus_tag="TCM_014592" /product="Kinase superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010770t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s09630.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5301t2" CDS join(23379568..23379624,23380237..23380303, 23380613..23381987,23382090..23382225,23382313..23382401, 23382540..23382651,23382758..23382856) /locus_tag="TCM_014592" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010770t1" /codon_start=1 /product="Kinase superfamily protein, putative isoform 1" /protein_id="EOY22419.1" /db_xref="Phytozome:POPTR_0012s09630.1" /db_xref="TAIR:AT1G67580.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XUF4" /translation="MAAQDRWIVLSCVPSSGCAIFNYLSFIEVRSDQPKGAQQISGRV DFPRRSGVGKLNRGLAYAAPDKSGYNYPSNGKNLVAQNKNGYNLGPRRCGLEEVVRVK NGGTRFVDDGVRQPPQKKRKFSPIVWDIEEKEVRISSRNRVVSTPTTLSSPPSPCTSS IVSDEGVTKHSVSANLIEEVQHLPPKSSVFGFAAVSGQQCPDDEPEQGLVRKEIVQAP NIFTSRWSSDSDDEDVSRSEEKSRSSSLESGECERDDLEGDLIVLNQSNERSSCVLSA CEDGDMECQSVSYGVMDIDDKREEDVAVDQPELDVEEPTGRGVNMLLGCRSVFEYAKL NKISEGTYGIVYRARDKKTGEIVALKKVKILDRRDFEEYGFPLTSLREINILASFDHP SIVKVKEVVVDDHENVYMVMEYMQHDFKGLMESMKHPFSTSDVKCLMLQLLEGVKYLH DNWVLHRDMKTSNLLLNNQGELKICDFGMARQYGSPLKPYTTKVVTQWYRAPELLLGA KKYSTAVDMWSVGCIMAELLAKEPLFKGTSEIDQLRKIFDTLGTPSEKIWAGFSQLPG AKANYSKQLYNLLRRKFPAASFTGSPVLSDAGFDLLNRLLTYDPEKRITADDALNHDW FHELPLPKSKEFLPTFPPKM" mRNA join(23380364..23381987,23382090..23382225, 23382313..23382401,23382540..23382651,23382758..23384192) /locus_tag="TCM_014592" /product="Kinase superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010770t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s09630.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:PASA:2:TSA:puevd3b014098t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5301t2" CDS join(23380603..23381987,23382090..23382225, 23382313..23382401,23382540..23382651,23382758..23382856) /locus_tag="TCM_014592" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010770t1" /codon_start=1 /product="Kinase superfamily protein, putative isoform 2" /protein_id="EOY22420.1" /db_xref="Phytozome:POPTR_0012s09630.1" /db_xref="TAIR:AT1G67580.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XUF4" /translation="MAAGRVDFPRRSGVGKLNRGLAYAAPDKSGYNYPSNGKNLVAQN KNGYNLGPRRCGLEEVVRVKNGGTRFVDDGVRQPPQKKRKFSPIVWDIEEKEVRISSR NRVVSTPTTLSSPPSPCTSSIVSDEGVTKHSVSANLIEEVQHLPPKSSVFGFAAVSGQ QCPDDEPEQGLVRKEIVQAPNIFTSRWSSDSDDEDVSRSEEKSRSSSLESGECERDDL EGDLIVLNQSNERSSCVLSACEDGDMECQSVSYGVMDIDDKREEDVAVDQPELDVEEP TGRGVNMLLGCRSVFEYAKLNKISEGTYGIVYRARDKKTGEIVALKKVKILDRRDFEE YGFPLTSLREINILASFDHPSIVKVKEVVVDDHENVYMVMEYMQHDFKGLMESMKHPF STSDVKCLMLQLLEGVKYLHDNWVLHRDMKTSNLLLNNQGELKICDFGMARQYGSPLK PYTTKVVTQWYRAPELLLGAKKYSTAVDMWSVGCIMAELLAKEPLFKGTSEIDQLRKI FDTLGTPSEKIWAGFSQLPGAKANYSKQLYNLLRRKFPAASFTGSPVLSDAGFDLLNR LLTYDPEKRITADDALNHDWFHELPLPKSKEFLPTFPPKM" gene complement(23384276..23386916) /locus_tag="TCM_014593" /note="dbxref CacaoGD:Thecc1EG014593" mRNA complement(join(23384276..23385112,23385350..23385659, 23385739..23386170,23386338..23386897)) /locus_tag="TCM_014593" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene06386" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010771t1" /inference="similar to AA sequence:frave:gene06386" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc196t14" CDS complement(join(23384970..23385112,23385350..23385659, 23385739..23386170,23386338..23386781)) /locus_tag="TCM_014593" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene06386; paralog of Thecc1EG010771t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22421.1" /db_xref="TAIR:AT1G67570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3M9" /translation="MAAPPAQAQETATAQTNIPLLEPSTQLEEDQDDTQLSRSLHRLE TSLRLFGFCQYSVFSFSISWFLFLLLGITLPLLIILLSYCSGCYKYEIKSFELEILVS QFLVSAISLFCISRNLRKYGIRKFLFVDRYHGHVEQFREEYAKKIDDFFRLLAAWILP CFIVKAAREVTRVVYAYHDSWWRSVVMLTVLLVSWSYSTVIYLSGSGLFNLVCNLQVI HFENYGKLLERDSDLSVYMEEHIRLTHYLSKISHRFRIFLLLEFLVVTASQFVALLET TENRGIINFINGGDFAVISIVELVGIIICLHAAAKISHRAQGLASVASRWHALVTCNS NDTSQSVSISNDDGGLEAAHLPVPMPINYSETDLEAVDYVPVPTNTQMASYMSLYHKR QAFVTYLQFNPGGATVYGWKIDRALISTIFFIELSLVLFVLGKTVTFTTN" mRNA complement(join(23385135..23385228,23385350..23385659, 23385739..23386170,23386338..23386916)) /locus_tag="TCM_014593" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene06386" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010771t1" /inference="similar to AA sequence:frave:gene06386" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5299t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5299t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc196t14" CDS complement(join(23385164..23385228,23385350..23385659, 23385739..23386170,23386338..23386781)) /locus_tag="TCM_014593" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene06386; paralog of Thecc1EG010771t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY22422.1" /db_xref="TAIR:AT1G67570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3M9" /translation="MAAPPAQAQETATAQTNIPLLEPSTQLEEDQDDTQLSRSLHRLE TSLRLFGFCQYSVFSFSISWFLFLLLGITLPLLIILLSYCSGCYKYEIKSFELEILVS QFLVSAISLFCISRNLRKYGIRKFLFVDRYHGHVEQFREEYAKKIDDFFRLLAAWILP CFIVKAAREVTRVVYAYHDSWWRSVVMLTVLLVSWSYSTVIYLSGSGLFNLVCNLQVI HFENYGKLLERDSDLSVYMEEHIRLTHYLSKISHRFRIFLLLEFLVVTASQFVALLET TENRGIINFINGGDFAVISIVELVGIIICLHAAAKISHRAQGLASVASRWHALVTCNS NDTSQSVSISNDDGGLEAAHLPVPMPINYSETDLEAVDYVPVPTNTQMASYMSLYHKR QAFVFIEEKKEKSKGWITIPVPTE" gene complement(23389297..23398019) /locus_tag="TCM_014594" /note="dbxref CacaoGD:Thecc1EG014594" mRNA complement(join(23389297..23389820,23389970..23390072, 23390474..23390541,23390659..23390804,23391395..23391584, 23392101..23393131,23394770..23394839,23396912..23398019)) /locus_tag="TCM_014594" /product="AMP-dependent synthetase and ligase family protein" /inference="alignment:exonerate-protein:2:frave:gene06385" /inference="similar to AA sequence:ricco:30147.m013769" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8767t2" CDS complement(join(23389695..23389820,23389970..23390072, 23390474..23390541,23390659..23390804,23391395..23391584, 23392101..23393131,23394770..23394839,23396912..23397919)) /locus_tag="TCM_014594" /note="dbxref ricco:30147.m013769" /codon_start=1 /product="AMP-dependent synthetase and ligase family protein" /protein_id="EOY22423.1" /db_xref="TAIR:AT5G63380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBV5" /translation="MDPNTGFCYKTGTYSSLKPPIPLPPTDRPLSVAEYCLSLFHSTS TSGATTFVVNATTGQTLAYSQFVSQIHSLAYSVQKRYSLSQNDVAFILSPPSLHTPVL YFALMSLGVIVSPANPLSSNSEIAHQVQLSKPVIAFATSQASHKIPSLKHGTVLLDSP EFLSFLTQCNIDNDIIKRVKVNQSDSAAILYSSGTTGRVKGAMLTHRNLIAIMTAIHH YNTTEGGDNDNPQRSVTFFTVPLFHVFGFFMLLGAVLSADTVVLTERFEFEEMLRAVE KYKITGMPVSPPLVLAFVKSDLTKKYDLSSLQGLGCGGAPLGKEIAQRFKEKFPNVVL VQMKKGDIKLAMIIKIIFCSDLLNLESDNPHRSIDPNTGFCPQTRTFHSLRPFVPLPP PSQPLSLPQYVLSLIRSSSTPTTGDTTFAVDATNAGTLSYSQFISQIHSLAHSLRKNY SLSQNDVAFILSPPSLHVPLLYFALMSLGIVVSPANPLSSELEIAHQVQLCKPVIAFA TLKTSSKLPSLKLGTVLLDSPEFLTFLTQHDVDNDFINRVHVSQHDTAAVLYSSGTTG RVKGVMLSHRNLIALIAGFYHIRHFPQERREPHPVSFFTVPLFHVFGFFMLARAFSMG QSVVFTERFEFEGMLRAIEKYRITYMPVSPPLVVALSKSDLTKKYDLSSLLLLGCGGA PLGKEVVERFKEKFPAVELVQGYGLTETGGGATRVIGPEEAARYGTVGRLAENMEAKI VDPVTGEALPPGQRGELWLRGPTVMKGYVGDENATAETLDSEGWLKTGDICYFDSEGF LYVVDRLKELIKYKAYQVPPAELEHLLHSHPEIADAAVIPYPDEEAGQIPMAYVVRNP GSSITKSQVMDFIAKQVAPYKKIRRVAFVNSIPKSPAGKILRRELVNHSLSGGLSKL" mobile_element complement(23393610..23394841) /note="source:scaffold_5_CACTA_0615 982 2252" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23394839..23395482 /note="source:scaffold_5_CACTA_0615 1576 2253" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23399080..23400219 /note="source:CACAO_on_E683_scaffold_9 1205 2301" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23400218..23401649 /note="source:CACAO_M_E49205_F4_scaffold_6 2147 3588" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23401782..23401916 /note="source:CACAO_M_E4063_F12_scaffold_2 7443 7594" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23401896..23402054 /note="source:CACAO_M_S_E16683_F28_scaffold_2 3775 3970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23403175..23404085) /note="source:CACAO_M_E49279_F74_scaffold_6 1007 1942" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23404423..23409478 /locus_tag="TCM_014595" /note="dbxref CacaoGD:Thecc1EG014595" mRNA join(23404423..23404565,23404660..23404775, 23404860..23404943,23405020..23405156,23405311..23405481, 23405626..23405689,23405791..23405898,23406374..23406527, 23407176..23407265,23407347..23407397,23407599..23407693, 23407832..23407886,23408443..23408502,23408561..23409478) /locus_tag="TCM_014595" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013111001" /inference="similar to AA sequence:Phytozome:GSVIVT01013111001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01818t00001" CDS join(23404484..23404565,23404660..23404775, 23404860..23404943,23405020..23405156,23405311..23405481, 23405626..23405689,23405791..23405898,23406374..23406527, 23407176..23407265,23407347..23407397,23407599..23407693, 23407832..23407886,23408443..23408502,23408561..23408784) /locus_tag="TCM_014595" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY22424.1" /db_xref="Phytozome:GSVIVT01013111001" /db_xref="TAIR:AT1G29320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF75" /translation="MPRTTAVECPGCPPFRALTFDALGLIKGIEARGKEGGVPKVVER WGDPDASKCVLAASIDDRKTDPLLAVARKSGRVSNLHFSSPVLVVPGQIEVEVLNPLN GELSVTVSIVNSGSARPEDDAIVGLHLFRRQRLELTSRSCTLLTCTTKGNASIRSVEM TDSPADSGALKTWSVCASGNISCSQVDGSESYAIFGGKGVEVNMWDLDKCTKIWTGKP PPKNSLGIFTPTWFTSATFLSKDDHRKVVAGTNSHQVRLYDVSAQRRPVISFDFRETS IKAVTEDLDGHTIYIGNGSGDLASVDIRTGKLLGCFLGKCSGSIRSIARHPELPVIAS CGCVCMHILHFGKLFFAGMALQLASQLVLFLGLDSYLRIWDIGTRQLLSSVFLKQHLT KVVFDTNFTEGISRRVRECGVGGANNVMVLEVKHSAADSTLHEAQSIGEVQSADETEK LPTKRKKSSKEDRGSRKKASKVKDGSKKLKSKKRSKSLENEFADDA" gene complement(23409605..23413229) /locus_tag="TCM_014596" /note="dbxref CacaoGD:Thecc1EG014596" mRNA complement(join(23409605..23410458,23411177..23411312, 23411410..23411464,23411617..23411739,23412938..23413229)) /locus_tag="TCM_014596" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m013767" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017110t3" /inference="similar to AA sequence:Phytozome:POPTR_0012s09690.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13491t00001" CDS complement(join(23410419..23410458,23411177..23411312, 23411410..23411464,23411617..23411712)) /locus_tag="TCM_014596" /note="paralog of Thecc1EG017110t3" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22425.1" /db_xref="Phytozome:POPTR_0012s09690.1" /db_xref="TAIR:AT5G20090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3N6" /translation="MASSFRAFLNSPVGPKTTHFWGPVANWGFVLAGLADMKKPPEMI SGNMTTAMCVYSALFMRFAWMVQPRNYLLLVCHASNETVQLYQLSRWARAQGYLSEKK EEASSQ" gene 23415092..23419674 /locus_tag="TCM_014597" /note="dbxref CacaoGD:Thecc1EG014597" mRNA join(23415092..23415468,23415555..23415673, 23415754..23415823,23415928..23415986,23416102..23416177, 23416304..23416381,23416476..23416563,23416679..23416928, 23417040..23417155,23417346..23417566,23417685..23417825, 23417924..23418032,23418129..23418829,23419388..23419674) /locus_tag="TCM_014597" /product="Beta-glucosidase 15" /inference="alignment:exonerate-protein:2:frave:gene15314" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014600t1" /inference="similar to AA sequence:frave:gene15314" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5255t3" CDS join(23415375..23415468,23415555..23415673, 23415754..23415823,23415928..23415986,23416102..23416177, 23416304..23416381,23416476..23416563,23416679..23416928, 23417040..23417155,23417346..23417566,23417685..23417825, 23417924..23418032,23418129..23418315) /locus_tag="TCM_014597" /note="dbxref frave:gene15314; paralog of Thecc1EG014600t1" /codon_start=1 /product="Beta-glucosidase 15" /protein_id="EOY22426.1" /db_xref="TAIR:AT5G44640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAJ3" /translation="MLPISSARNPQQSPIWISAFALFACLSVHGRITQASQEWVGAPL SDSREYLNVRSHFPSDFVFGASTAAAQIEGSTTSEGKGPSVWDQFLREFPDIVKDNSS FDVAIDSYNRYKEDVLALKDLGIDAYRFSIPWTRILPNGSLSGGINQEGINHYNSLID ELIKHGIKPFVTLLHFDSPQALEEKYGGFLNRNIVKDFKKYAEICFKAFGDRVKNWIT INEPLIIANFGYSTGVAPPGRCSDRKRCPAGNSATEPYIVAHNLLLAHATVARLYKDK YQAAQGGKIGLSLVGEYYEPYSSTLLDRAAAKRALDFVLGWFMEPLVRGRYPLSMRRL VKDRLPVFSAKEEKLVKGSFDFIGINYYTSRYAKHIPINPQAAPVSYLADQHVNVSVT KNGVLIGPKAEGSWYLYIYPKGLYRILKFMEENYDENLEIYITENGVTEEKDDSIPIH QALNDQHRIDFIQKHLRQIRRAINNGVNVKGYFYWSSFDDFEWSEGYGVRFGLYYVDY KNNLRRIPKKSAKWYHDFVKGGRKQAS" gene 23419721..23421975 /locus_tag="TCM_014598" /note="dbxref CacaoGD:Thecc1EG014598" mRNA join(23419721..23419900,23420129..23420193, 23421213..23421975) /locus_tag="TCM_014598" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS join(23419816..23419900,23420129..23420193, 23421213..23421419) /locus_tag="TCM_014598" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22427.1" /translation="MMSYLIEELSMFDRFNEWECIMTAKIVLDVDLMVVIDFNLIGFP YDWSTLVKIKREVCIFFDAKRIVRPLLIVENLTKIKSIKGKNYTFSALLDKGIIELVG TEEEEDCRIAWVSGIL" mobile_element 23424506..23424546 /note="source:CACAO_M_S_E51565_F2_scaffold_4 543 583" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23425831..23430651 /locus_tag="TCM_014600" /note="dbxref CacaoGD:Thecc1EG014600" mRNA join(23425831..23425837,23426686..23426921, 23427011..23427132,23427271..23427340,23427451..23427509, 23427624..23427699,23427849..23427926,23428020..23428107, 23428222..23428471,23428840..23428955,23429148..23429368, 23429487..23429627,23429734..23429842,23429943..23430651) /locus_tag="TCM_014600" /product="Beta-glucosidase 15" /inference="alignment:exonerate- protein:2:ricco:30147.m014539.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014597t1" /inference="similar to AA sequence:frave:gene15314" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5279t3" mobile_element complement(23426233..23426439) /note="source:scaffold_1_CACTA_0008 7119 7314" /mobile_element_type="transposon:TIR/CACTA" CDS join(23426822..23426921,23427011..23427132, 23427271..23427340,23427451..23427509,23427624..23427699, 23427849..23427926,23428020..23428107,23428222..23428471, 23428840..23428955,23429148..23429368,23429487..23429627, 23429734..23429842,23429943..23430114) /locus_tag="TCM_014600" /note="dbxref frave:gene15314; paralog of Thecc1EG014597t1" /codon_start=1 /product="Beta-glucosidase 15" /protein_id="EOY22428.1" /db_xref="TAIR:AT3G60130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAJ3" /translation="MLPLSSFSIASAQQSLIWISAFALLACLSVHGQITQASQEGVDA TLSNSGEYLNVKRSHFPRDFVFGASTAAAQIEGSTTFGGRGPSVWDEFVRKFPDRIID KSNLEVAIDSYKRYKEDALALKDLGVDAYRFSIPWTRILPDGSLSGGINQEGINHYNS LINELVKHGIKPFVTLFHFDSPEALEEKYGGFLNRTIVKDFKDYAEICFKTFGDRVKN WITINEPLVIAKFGYGLGMAPPGRCSDRKACPAGNAATEPYIAVHNLLLAHATVARLY KEKYQAAQGGQIGLSLVGQYYEPYSNTLFDRVAAKRAMDFELGWFMEPLVRGEYPLSM RRLVKDRLPVFSAKEKELVKGSFDFIGINYYTARYAKNIPINPQAAPISYSADQHVNA TVDKDGVLIGPSAGGSMFIYVYPKGLYKILKFMTKHYNKNLTIYITENGFTEKNDDSI PIHQAINDQPRIEFVQKHLQQLRRAINIDVNVKGYFYWSLFDDFEWTEGFSVRYGLYY VDYKNNLKRIPKKSATWYHDFVKGA" mobile_element 23430660..23430729 /note="source:CACAO_Mutator_E39_scaffold_1 4416 4486" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(23432027..23432577) /note="source:CACAO_Again_on_S_E233_scaffold_7 1 537" /mobile_element_type="transposon:TIR/hAT" gene 23433387..23434541 /locus_tag="TCM_014601" /note="dbxref CacaoGD:Thecc1EG014601" mRNA join(23433387..23433564,23434256..23434541) /locus_tag="TCM_014601" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" CDS join(23433509..23433564,23434256..23434514) /locus_tag="TCM_014601" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22429.1" /translation="MKTSATFPYSLKAPLIANKDIFCVCPFLGIAQEIRKFTLYIPEF YSVFVYKGWFSVWNKFVHEIFAGSCTGVDPCVILLWHASMSFIRGKPVEANTCMQPAV AV" mobile_element complement(23433652..23433864) /note="source:scaffold_9_CACTA_0946 1570 1859" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23434575..23434642) /note="source:CACAO_M_E85273_F192_scaffold_10 176 242" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(23434700..23439665) /locus_tag="TCM_014602" /note="dbxref CacaoGD:Thecc1EG014602" mRNA complement(join(23434700..23435530,23435675..23435933, 23436038..23436321,23436422..23436511,23436800..23436968, 23437205..23437985,23439518..23439665)) /locus_tag="TCM_014602" /product="O-fucosyltransferase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005936t1" /inference="similar to AA sequence:ricco:30147.m014537" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06589t00001" CDS complement(join(23435303..23435530,23435675..23435933, 23436038..23436321,23436422..23436511,23436800..23436968, 23437205..23437851)) /locus_tag="TCM_014602" /note="dbxref ricco:30147.m014537; paralog of Thecc1EG005936t1" /codon_start=1 /product="O-fucosyltransferase family protein, putative" /protein_id="EOY22430.1" /db_xref="TAIR:AT5G63390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SGV1" /translation="MARGRTIKNPFISLTPRSLCQLISASPLTSLFSSKKTSPSLFIF ILSFVVSFAFLGISVLRFFPSSQDSIQCSIVSPSSPSSQSLPTFSSSHSQIILAALLA GINSYNENEPRLGSSAMVPLPVHVVSGNLSEEEREFWQQPDGNGYRPCLEFSIGYRKK SAKISGEKNRFLVVVAAGGLNQQRNQIIDAVVIARILEASLVVPILQVNLIWEDESEF SDLYDVEHFKRTLRADVRVVSSLPSTHLAAKQTIVNQIPYNVSPLWIRARFFKRLNQD GALVLGGLDSKLSKNLPPDLQKLRCKVAFHALRFSRPILQLGNQLARRMWIEGPYIAL HLRLEKDVWVRTGCLTGLGPEYDKIITQIRESQPRYLTARVNMNYTQRRLSGLCPLNA LEMARLLKSLGAPRSARLYIAGGEPFGGTRALQQLAAEFPHLVRKEMLAREGELSPFL NSSSALSAIDYIVSFNSDIFIPSHGGNMGRALLGHRAYMGHRKCIRPNKRTILPFFED PSISEEELRKIIRSLHNKYLKSEPSKKEKTKDVIAFPLPECMCRQGTGVY" mobile_element 23438467..23439360 /note="source:CACAO_Again_on_S_E139_scaffold_4 3 985" /mobile_element_type="transposon:TIR/hAT" gene 23439760..23445417 /locus_tag="TCM_014603" /note="dbxref CacaoGD:Thecc1EG014603" mRNA join(23439760..23440108,23440269..23440404, 23440697..23440775,23440863..23441065,23441232..23441301, 23441866..23441949,23442052..23442207,23443028..23443201, 23443970..23444044,23444127..23444267,23444665..23445417) /locus_tag="TCM_014603" /product="Zn-dependent exopeptidases superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G60160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043913t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s09710.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5325t4" CDS join(23439886..23440108,23440269..23440404, 23440697..23440775,23440863..23441065,23441232..23441301, 23441866..23441949,23442052..23442207,23443028..23443201, 23443970..23444044,23444127..23444267,23444665..23444886) /locus_tag="TCM_014603" /note="paralog of Thecc1EG043913t1" /codon_start=1 /product="Zn-dependent exopeptidases superfamily protein" /protein_id="EOY22431.1" /db_xref="Phytozome:POPTR_0012s09710.1" /db_xref="TAIR:AT5G60160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LF32" /translation="MGYLGHGPNMYLDSYELVLRDPIYAMGEMLKNKNTKTKPSEAKD RRAMAESEVSSVVSDLINFLNASPTAFHAVAEARKRLEEVGYEQVFEREDWKLEVGKR YFFTRNHSTIVAFAIGKKYVAGNGFHIVGAHTDSPCLKLKPISKVTKGGYLEVGVQTY GSGLWHTWFDRDLTVAGRVITREEKGDSASYSHQLVRIEEPIMRVPTLAIHLDRGLND GFKVNTQSHLLPVLATSIKAELNKEVAENGPAEKMTKNSRHHSLLLQMIANKLGCQPD QICDFELQACDTQPSIVAGATKEFVFSGRLDNLCMSFCSLQALIDATSSESELVDESG VRMVALFDHEEVGSDSAQGAGSPVMLDALSRVTNCFTSDSKLLMKAIQRSFLVSADMA HAVHPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFIFREIAMQHNLPVQDFV VRNDMPCGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQE FSHLDTKITVDM" mobile_element 23443373..23443443 /note="source:scaffold_3_CACTA_0384 734 803" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23443409..23443482) /note="source:scaffold_5_CACTA_0596 6982 7058" /mobile_element_type="transposon:TIR/CACTA" gene complement(23446415..23449947) /locus_tag="TCM_014604" /note="dbxref CacaoGD:Thecc1EG014604" mRNA complement(join(23446415..23447065,23447447..23447536, 23447829..23447996,23448114..23448233,23448319..23448464, 23449568..23449706)) /locus_tag="TCM_014604" /product="Adenylate kinase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g03120.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010779t1" /inference="similar to AA sequence:Phytozome:Glyma05g03140.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07942t00001" mRNA complement(join(23446875..23447065,23447447..23447536, 23447829..23447996,23448114..23448233,23448319..23448464, 23449568..23449947)) /locus_tag="TCM_014604" /product="Adenylate kinase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g03120.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010779t1" /inference="similar to AA sequence:Phytozome:Glyma05g03140.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc332t5_C2; alternateUTRof:Thecc1EG014604t1; inference alignment:Newbler:10:TSA:cgbaP1_g07942t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc316t19_C1" CDS complement(join(23446967..23447065,23447447..23447536, 23447829..23447996,23448114..23448233,23448319..23448464, 23449568..23449679)) /locus_tag="TCM_014604" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010779t1" /codon_start=1 /product="Adenylate kinase 1 isoform 1" /protein_id="EOY22432.1" /db_xref="Phytozome:Glyma05g03140.1" /db_xref="TAIR:AT5G63400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FK35" /translation="MASSSVNLEDVPSESLMTELLRRMKCASKPDKRLILIGPPGSGK GTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDTGELVSDDLVVGIIDEA MKKPSCQKGFILDGFPRTVVQAQKLDEMLTKQGVKVDKVLDFAIDDAILEERITGRWI HPSSGRTYHTKFAPSKVPGIDDVTGEPLIQRKDDTAAVLKSRLESFHKQTEPVIDYYA KKGIVAKLHAEKPPKEVTDEVRKALS" CDS complement(join(23446967..23447065,23447447..23447536, 23447829..23447996,23448114..23448233,23448319..23448464, 23449568..23449679)) /locus_tag="TCM_014604" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010779t1" /codon_start=1 /product="Adenylate kinase 1 isoform 1" /protein_id="EOY22433.1" /db_xref="Phytozome:Glyma05g03140.1" /db_xref="TAIR:AT5G50370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FK35" /translation="MASSSVNLEDVPSESLMTELLRRMKCASKPDKRLILIGPPGSGK GTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDTGELVSDDLVVGIIDEA MKKPSCQKGFILDGFPRTVVQAQKLDEMLTKQGVKVDKVLDFAIDDAILEERITGRWI HPSSGRTYHTKFAPSKVPGIDDVTGEPLIQRKDDTAAVLKSRLESFHKQTEPVIDYYA KKGIVAKLHAEKPPKEVTDEVRKALS" mobile_element complement(23449514..23449561) /note="source:CACAO_PIF_E144_scaffold_10 5995 6041" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23449562..23449583 /note="source:CACAO_Mutator_E1149_scaffold_5 4731 4797" /mobile_element_type="transposon:TIR/Mutator" gene complement(23450019..23455011) /locus_tag="TCM_014605" /note="dbxref CacaoGD:Thecc1EG014605" mRNA complement(join(23450019..23450985,23451268..23451402, 23451477..23451625,23451827..23452079,23452164..23452351, 23452482..23452639,23452753..23452967,23453903..23454597, 23454935..23455011)) /locus_tag="TCM_014605" /product="Nucleolar protein NOP56" /inference="alignment:exonerate- protein:2:ricco:30147.m014534" /inference="similar to AA sequence:ricco:30147.m014534" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05115t00001" CDS complement(join(23450651..23450985,23451268..23451402, 23451477..23451625,23451827..23452079,23452164..23452351, 23452482..23452639,23452753..23452967,23453903..23454107)) /locus_tag="TCM_014605" /note="dbxref ricco:30147.m014534" /codon_start=1 /product="Nucleolar protein NOP56" /protein_id="EOY22434.1" /db_xref="TAIR:AT1G56110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C1E8Z7" /translation="MALYLLYESASGYALLQAQGLDEIGQNTEAVRNSVADLNRFGKV VQLTAFHPFESALDALNQCNSVSEGLMTDELRSFLELNLPKVKEGKKSKFSVGVAEPK LGSHISETTKITCQSGEFVLELLRGVRLHFDKFIRDLKPGDLEKAQLGLGHSYSRAKV KFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVAK LIEDKSKLSEEHIPALTEILGDEDKAKEVVEAGKASMGQDLTPVDLINVQLFAQRVMD LAEYRKNLYDYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGA EKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFADKG TTVFGEKLREQVEERLEFYDKGVAPRKNIDVMKAAIESTESKDLEMEDTQPGEASVKK SKKRKSKTEDGEAMAEDKPAAATNGDASEDAKSEKKRKKKEKRKTEQEQVEEEQANGV NGDVTEQDGTAKKKKKKKSKDEGAGSEAKKKKKKSHE" mobile_element complement(23451931..23451999) /note="source:INTACT570_F260_scaffold_5-int 9498 9566" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23457286..23463460 /locus_tag="TCM_014606" /note="dbxref CacaoGD:Thecc1EG014606" mRNA join(23457286..23457854,23458202..23458601, 23458772..23460210,23460328..23460461,23460552..23460792, 23460877..23461091,23461187..23461212,23461330..23461441, 23461620..23463416) /locus_tag="TCM_014606" /product="Leucine-rich repeat protein kinase family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035216" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017117t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10520.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b014113t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5323t1" mRNA join(23457286..23457854,23458202..23458601, 23458772..23460210,23460328..23460461,23460552..23460792, 23460880..23461091,23461187..23461212,23461330..23461441, 23461620..23463416) /locus_tag="TCM_014606" /product="Leucine-rich repeat protein kinase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035216" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017117t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10520.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b014113t1a4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5323t1" mRNA join(23457286..23457854,23458202..23458601, 23458772..23460210,23460328..23460461,23460552..23460792, 23460880..23461091,23461187..23461212,23461330..23461441, 23461623..23462039) /locus_tag="TCM_014606" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035216" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017117t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10520.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5323t1" mRNA join(23458027..23460210,23460328..23460461, 23460552..23460792,23460877..23461097,23461194..23461212, 23461330..23461441,23461623..23462047) /locus_tag="TCM_014606" /product="Leucine-rich repeat protein kinase family protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035216" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017117t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10520.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc29t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5323t1" mRNA join(23458367..23460210,23460328..23460461, 23460552..23460792,23460877..23461091,23461187..23461212, 23461330..23462458,23463180..23463219,23463304..23463460) /locus_tag="TCM_014606" /product="Leucine-rich repeat protein kinase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035216" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017117t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10520.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc50t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5323t1" mRNA join(23458367..23458601,23458772..23460210, 23460328..23460461,23460552..23460792,23460877..23461091, 23461187..23461212,23461330..23461441,23461623..23462458, 23463180..23463219,23463304..23463460) /locus_tag="TCM_014606" /product="Leucine-rich repeat protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035216" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017117t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10520.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc50t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5323t1" CDS join(23458848..23460210,23460328..23460461, 23460552..23460792,23460877..23461091,23461187..23461212, 23461330..23461441,23461620..23461844) /locus_tag="TCM_014606" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG017117t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 5" /protein_id="EOY22439.1" /db_xref="Phytozome:POPTR_0015s10520.1" /db_xref="TAIR:AT5G14210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF82" /translation="MENCSLFLLLCLTWSLFILSDSQLQTSQTQVLLQLKKHLEYPKQ LEIWYDRKTEFCFLSPSAQVNISCQYNSVTELKIMGDKPASEVSDFHGFAIPNQTLSE SFSMDSFVTTLSRLPSLKVLSLVSLGIWGPLPDKIHRLSSLEYLDLSSNFLFGSIPPK ISTLVKLQTFALDDNFFNDSIPSWLDSLSNLTILSMRNNRLKGPFPSSIKGITTLTNL ALSSNEITGKLPDLSSLRNLNVLDLSGNKLGSSLPTMPKGVVMAFLSNNSFFGEIPPK YGQLSQLQHIDVSFNMLSGTPPAELFSLPNISYLNVASNTLSGSLSDNLSCGSNLKFV DISNNRLMGSLPSCLHSESRNRVVKLSGNCLSVDGRHQHPESYCRDLEVNMYRANAGA KGIGVLVSLIVGIAVVIVLLAIGFLIVCRRYCPRGISEQHLLHKSVQDNSTAGFSSGI LTNARYISEAAKLGAQGLPACRSFTLEELKEATNNFDDSAFLGEGSYGKLFKGRLESG TQVAIRCLPTSKKYWIRNLKLRLDILAKIRHPHLVCILGHCIEVGQDDGSVNRVFLVY EYIPNGNFRSHLSEENCSGGVLNWSERLAVLIGICKAVHFLHTGVMPGFFHNRLKTNN ILLNEHRMAKLGDYGLSIISEENGNYGAKGEDPTSWQMTRLEDDIYSFGLILLESMIG PSMAAKKEATLRDELQELLRNQDGRARFMNPVVSATCSQESISIMISITNKCICPELW SRPSFEDILWNLQYAAQVQANADAEQRFGRV" CDS join(23458848..23460210,23460328..23460461, 23460552..23460792,23460877..23461091,23461187..23461212, 23461330..23461441,23461623..23461844) /locus_tag="TCM_014606" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017117t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 2" /protein_id="EOY22436.1" /db_xref="Phytozome:POPTR_0015s10520.1" /db_xref="TAIR:AT5G14210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF82" /translation="MENCSLFLLLCLTWSLFILSDSQLQTSQTQVLLQLKKHLEYPKQ LEIWYDRKTEFCFLSPSAQVNISCQYNSVTELKIMGDKPASEVSDFHGFAIPNQTLSE SFSMDSFVTTLSRLPSLKVLSLVSLGIWGPLPDKIHRLSSLEYLDLSSNFLFGSIPPK ISTLVKLQTFALDDNFFNDSIPSWLDSLSNLTILSMRNNRLKGPFPSSIKGITTLTNL ALSSNEITGKLPDLSSLRNLNVLDLSGNKLGSSLPTMPKGVVMAFLSNNSFFGEIPPK YGQLSQLQHIDVSFNMLSGTPPAELFSLPNISYLNVASNTLSGSLSDNLSCGSNLKFV DISNNRLMGSLPSCLHSESRNRVVKLSGNCLSVDGRHQHPESYCRDLEVNMYRANAGA KGIGVLVSLIVGIAVVIVLLAIGFLIVCRRYCPRGISEQHLLHKSVQDNSTAGFSSGI LTNARYISEAAKLGAQGLPACRSFTLEELKEATNNFDDSAFLGEGSYGKLFKGRLESG TQVAIRCLPTSKKYWIRNLKLRLDILAKIRHPHLVCILGHCIEVGQDDGSVNRVFLVY EYIPNGNFRSHLSEENCSGGVLNWSERLAVLIGICKAVHFLHTGVMPGFFHNRLKTNN ILLNEHRMAKLGDYGLSIISEENGNYGAKGEDPTSWQMTRLEDDIYSFGLILLESMIG PSMAAKKEATLRDELELLRNQDGRARFMNPVVSATCSQESISIMISITNKCICPELWS RPSFEDILWNLQYAAQVQANADAEQRFGRV" CDS join(23458848..23460210,23460328..23460461, 23460552..23460792,23460880..23461091,23461187..23461212, 23461330..23461441,23461620..23461844) /locus_tag="TCM_014606" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG017117t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 4" /protein_id="EOY22438.1" /db_xref="Phytozome:POPTR_0015s10520.1" /db_xref="TAIR:AT5G14210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF82" /translation="MENCSLFLLLCLTWSLFILSDSQLQTSQTQVLLQLKKHLEYPKQ LEIWYDRKTEFCFLSPSAQVNISCQYNSVTELKIMGDKPASEVSDFHGFAIPNQTLSE SFSMDSFVTTLSRLPSLKVLSLVSLGIWGPLPDKIHRLSSLEYLDLSSNFLFGSIPPK ISTLVKLQTFALDDNFFNDSIPSWLDSLSNLTILSMRNNRLKGPFPSSIKGITTLTNL ALSSNEITGKLPDLSSLRNLNVLDLSGNKLGSSLPTMPKGVVMAFLSNNSFFGEIPPK YGQLSQLQHIDVSFNMLSGTPPAELFSLPNISYLNVASNTLSGSLSDNLSCGSNLKFV DISNNRLMGSLPSCLHSESRNRVVKLSGNCLSVDGRHQHPESYCRDLEVNMYRANAGA KGIGVLVSLIVGIAVVIVLLAIGFLIVCRRYCPRGISEQHLLHKSVQDNSTAGFSSGI LTNARYISEAAKLGAQGLPACRSFTLEELKEATNNFDDSAFLGEGSYGKLFKGRLESG TQVAIRCLPTSKKYWIRNLKLRLDILAKIRHPHLVCILGHCIEVGQDDGSVNRVFLVY EYIPNGNFRSHLSENCSGGVLNWSERLAVLIGICKAVHFLHTGVMPGFFHNRLKTNNI LLNEHRMAKLGDYGLSIISEENGNYGAKGEDPTSWQMTRLEDDIYSFGLILLESMIGP SMAAKKEATLRDELQELLRNQDGRARFMNPVVSATCSQESISIMISITNKCICPELWS RPSFEDILWNLQYAAQVQANADAEQRFGRV" CDS join(23458848..23460210,23460328..23460461, 23460552..23460792,23460880..23461091,23461187..23461212, 23461330..23461441,23461623..23461844) /locus_tag="TCM_014606" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017117t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY22435.1" /db_xref="Phytozome:POPTR_0015s10520.1" /db_xref="TAIR:AT5G14210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF82" /translation="MENCSLFLLLCLTWSLFILSDSQLQTSQTQVLLQLKKHLEYPKQ LEIWYDRKTEFCFLSPSAQVNISCQYNSVTELKIMGDKPASEVSDFHGFAIPNQTLSE SFSMDSFVTTLSRLPSLKVLSLVSLGIWGPLPDKIHRLSSLEYLDLSSNFLFGSIPPK ISTLVKLQTFALDDNFFNDSIPSWLDSLSNLTILSMRNNRLKGPFPSSIKGITTLTNL ALSSNEITGKLPDLSSLRNLNVLDLSGNKLGSSLPTMPKGVVMAFLSNNSFFGEIPPK YGQLSQLQHIDVSFNMLSGTPPAELFSLPNISYLNVASNTLSGSLSDNLSCGSNLKFV DISNNRLMGSLPSCLHSESRNRVVKLSGNCLSVDGRHQHPESYCRDLEVNMYRANAGA KGIGVLVSLIVGIAVVIVLLAIGFLIVCRRYCPRGISEQHLLHKSVQDNSTAGFSSGI LTNARYISEAAKLGAQGLPACRSFTLEELKEATNNFDDSAFLGEGSYGKLFKGRLESG TQVAIRCLPTSKKYWIRNLKLRLDILAKIRHPHLVCILGHCIEVGQDDGSVNRVFLVY EYIPNGNFRSHLSENCSGGVLNWSERLAVLIGICKAVHFLHTGVMPGFFHNRLKTNNI LLNEHRMAKLGDYGLSIISEENGNYGAKGEDPTSWQMTRLEDDIYSFGLILLESMIGP SMAAKKEATLRDELELLRNQDGRARFMNPVVSATCSQESISIMISITNKCICPELWSR PSFEDILWNLQYAAQVQANADAEQRFGRV" CDS join(23458848..23460210,23460328..23460461, 23460552..23460792,23460877..23461091,23461187..23461212, 23461330..23461726) /locus_tag="TCM_014606" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG017117t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 3" /protein_id="EOY22437.1" /db_xref="Phytozome:POPTR_0015s10520.1" /db_xref="TAIR:AT5G14210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF82" /translation="MENCSLFLLLCLTWSLFILSDSQLQTSQTQVLLQLKKHLEYPKQ LEIWYDRKTEFCFLSPSAQVNISCQYNSVTELKIMGDKPASEVSDFHGFAIPNQTLSE SFSMDSFVTTLSRLPSLKVLSLVSLGIWGPLPDKIHRLSSLEYLDLSSNFLFGSIPPK ISTLVKLQTFALDDNFFNDSIPSWLDSLSNLTILSMRNNRLKGPFPSSIKGITTLTNL ALSSNEITGKLPDLSSLRNLNVLDLSGNKLGSSLPTMPKGVVMAFLSNNSFFGEIPPK YGQLSQLQHIDVSFNMLSGTPPAELFSLPNISYLNVASNTLSGSLSDNLSCGSNLKFV DISNNRLMGSLPSCLHSESRNRVVKLSGNCLSVDGRHQHPESYCRDLEVNMYRANAGA KGIGVLVSLIVGIAVVIVLLAIGFLIVCRRYCPRGISEQHLLHKSVQDNSTAGFSSGI LTNARYISEAAKLGAQGLPACRSFTLEELKEATNNFDDSAFLGEGSYGKLFKGRLESG TQVAIRCLPTSKKYWIRNLKLRLDILAKIRHPHLVCILGHCIEVGQDDGSVNRVFLVY EYIPNGNFRSHLSEENCSGGVLNWSERLAVLIGICKAVHFLHTGVMPGFFHNRLKTNN ILLNEHRMAKLGDYGLSIISEENGNYGAKGEDPTSWQMTRLEDDIYSFGLILLESMIG PSMAAKKEATLRDELVCAETLSTLRTTTFHISSIAQQREGYAYNHVLQPMFYIFFQLR LLIYHKISEIIYAVILAGIVTQPGWAGKVHEPSCFSYLLARIYINHDFHYK" CDS join(23458848..23460210,23460328..23460461, 23460552..23460792,23460877..23461097,23461194..23461212, 23461330..23461337) /locus_tag="TCM_014606" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG017117t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 6" /protein_id="EOY22440.1" /db_xref="Phytozome:POPTR_0015s10520.1" /db_xref="TAIR:AT5G14210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IF82" /translation="MENCSLFLLLCLTWSLFILSDSQLQTSQTQVLLQLKKHLEYPKQ LEIWYDRKTEFCFLSPSAQVNISCQYNSVTELKIMGDKPASEVSDFHGFAIPNQTLSE SFSMDSFVTTLSRLPSLKVLSLVSLGIWGPLPDKIHRLSSLEYLDLSSNFLFGSIPPK ISTLVKLQTFALDDNFFNDSIPSWLDSLSNLTILSMRNNRLKGPFPSSIKGITTLTNL ALSSNEITGKLPDLSSLRNLNVLDLSGNKLGSSLPTMPKGVVMAFLSNNSFFGEIPPK YGQLSQLQHIDVSFNMLSGTPPAELFSLPNISYLNVASNTLSGSLSDNLSCGSNLKFV DISNNRLMGSLPSCLHSESRNRVVKLSGNCLSVDGRHQHPESYCRDLEVNMYRANAGA KGIGVLVSLIVGIAVVIVLLAIGFLIVCRRYCPRGISEQHLLHKSVQDNSTAGFSSGI LTNARYISEAAKLGAQGLPACRSFTLEELKEATNNFDDSAFLGEGSYGKLFKGRLESG TQVAIRCLPTSKKYWIRNLKLRLDILAKIRHPHLVCILGHCIEVGQDDGSVNRVFLVY EYIPNGNFRSHLSEENCSGGVLNWSERLAVLIGICKAVHFLHTGVMPGFFHNRLKTNN ILLNEHRMAKLGDYGLSIISEENGNYGVRERTLHHGK" gene complement(23462007..23464924) /locus_tag="TCM_014607" /note="dbxref CacaoGD:Thecc1EG014607" mRNA complement(join(23462007..23462456,23463178..23463218, 23463303..23463384,23463519..23463659,23463924..23464470, 23464893..23464924)) /locus_tag="TCM_014607" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017121t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06416t00001" mRNA complement(join(23462045..23462456,23463178..23463329, 23463519..23463659,23463924..23464407)) /locus_tag="TCM_014607" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017121t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10530.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00020t00007; inference alignment:Newbler:10:TSA:cgbaP1_g06416t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc50t1" mRNA complement(join(23462055..23462456,23463178..23463218, 23463303..23463384,23463519..23463659,23463924..23464419)) /locus_tag="TCM_014607" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017121t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10530.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02469t00001; alternateUTRof:Thecc1EG014607t1; inference alignment:Newbler:10:TSA:cgbaP1_g06416t00001" CDS complement(join(23462289..23462456,23463178..23463218, 23463303..23463384,23463519..23463659,23463924..23464301)) /locus_tag="TCM_014607" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017121t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY22441.1" /db_xref="Phytozome:POPTR_0015s10530.1" /db_xref="TAIR:AT3G01820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38HW2" /translation="MITTLSRLSTSSAAVVTAAAGPLYRLLQITVREFHGAAEPLLDP DYCYYYGPSQEPRRDQLVRSTPMADTEGSVPLRGVQWAFVGNPRAKKHVYAEMLSKLL KVPHISMASLVRQELSPHSILYKQIANAVNHGELVQEDIILGLLSKRLEDGHYRGETG FILDGIPRSRTQAEILDQLAEIDLVVNFLCTEDLVTNTQGEASWKERLQDYTKQSKPL EDYYKKQKKLLDFQVGSAHVETWRGLLTALHLQHTNAATHSQKLTVGSILL" CDS complement(join(23462289..23462456,23463178..23463218, 23463303..23463384,23463519..23463659,23463924..23464301)) /locus_tag="TCM_014607" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017121t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY22442.1" /db_xref="Phytozome:POPTR_0015s10530.1" /db_xref="TAIR:AT3G01820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38HW2" /translation="MITTLSRLSTSSAAVVTAAAGPLYRLLQITVREFHGAAEPLLDP DYCYYYGPSQEPRRDQLVRSTPMADTEGSVPLRGVQWAFVGNPRAKKHVYAEMLSKLL KVPHISMASLVRQELSPHSILYKQIANAVNHGELVQEDIILGLLSKRLEDGHYRGETG FILDGIPRSRTQAEILDQLAEIDLVVNFLCTEDLVTNTQGEASWKERLQDYTKQSKPL EDYYKKQKKLLDFQVGSAHVETWRGLLTALHLQHTNAATHSQKLTVGSILL" mRNA complement(join(23462737..23463218,23463303..23463384, 23463519..23463659,23463924..23464470,23464893..23464924)) /locus_tag="TCM_014607" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017121t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10530.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b014114t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g06416t00001" mRNA complement(join(23462737..23463384,23463519..23463659, 23463924..23464470,23464893..23464924)) /locus_tag="TCM_014607" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017121t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10530.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b014114t1a3; inference alignment:Newbler:10:TSA:cgbaP1_g06416t00001" CDS complement(join(23463130..23463218,23463303..23463384, 23463519..23463659,23463924..23464301)) /locus_tag="TCM_014607" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG017121t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 4" /protein_id="EOY22444.1" /db_xref="Phytozome:POPTR_0015s10530.1" /db_xref="TAIR:AT3G01820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38HW2" /translation="MITTLSRLSTSSAAVVTAAAGPLYRLLQITVREFHGAAEPLLDP DYCYYYGPSQEPRRDQLVRSTPMADTEGSVPLRGVQWAFVGNPRAKKHVYAEMLSKLL KVPHISMASLVRQELSPHSILYKQIANAVNHGELVQEDIILGLLSKRLEDGHYRGETG FILDGIPRSRTQAEILDQLAEIDLVVNFLCTEDLVTNTQGEASWKERLQDYTKQVVFS SHISCIQVTVL" CDS complement(join(23463289..23463384,23463519..23463659, 23463924..23464301)) /locus_tag="TCM_014607" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG017121t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 5" /protein_id="EOY22445.1" /db_xref="Phytozome:POPTR_0015s10530.1" /db_xref="TAIR:AT3G01820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38HW2" /translation="MITTLSRLSTSSAAVVTAAAGPLYRLLQITVREFHGAAEPLLDP DYCYYYGPSQEPRRDQLVRSTPMADTEGSVPLRGVQWAFVGNPRAKKHVYAEMLSKLL KVPHISMASLVRQELSPHSILYKQIANAVNHGELVQEDIILGLLSKRLEDGHYRGETG FILDGIPRSRTQAEILDQLAEIDLVVNFLCTEDLVTNTQGGEFF" CDS complement(join(23463318..23463329,23463519..23463659, 23463924..23464301)) /locus_tag="TCM_014607" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG017121t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /protein_id="EOY22443.1" /db_xref="Phytozome:POPTR_0015s10530.1" /db_xref="TAIR:AT3G01820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38HW2" /translation="MITTLSRLSTSSAAVVTAAAGPLYRLLQITVREFHGAAEPLLDP DYCYYYGPSQEPRRDQLVRSTPMADTEGSVPLRGVQWAFVGNPRAKKHVYAEMLSKLL KVPHISMASLVRQELSPHSILYKQIANAVNHGELVQEDIILGLLSKRLEDGHYRGETG FILDGIPRSRTQAKTW" mobile_element complement(23464482..23465084) /note="source:MITE_Unknow_2_12 29 690" /mobile_element_type="transposon:TIR/MITE" gene complement(23464811..23469421) /locus_tag="TCM_014608" /note="dbxref CacaoGD:Thecc1EG014608" mRNA complement(join(23464811..23465928,23466009..23466097, 23466216..23466401,23466530..23466604,23467013..23467195, 23467295..23467343,23467577..23467718,23468663..23468744, 23468827..23468885,23469185..23469421)) /locus_tag="TCM_014608" /product="Arginosuccinate synthase family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g03190.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06727t00001" mRNA complement(join(23465328..23465928,23466009..23466097, 23466216..23466401,23466530..23466604,23467013..23467195, 23467295..23467343,23467577..23467718,23468663..23468744, 23468827..23468885,23469032..23469171)) /locus_tag="TCM_014608" /product="Arginosuccinate synthase family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g03190.1" /inference="similar to AA sequence:Phytozome:Glyma05g03190.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc44t4; inference alignment:Newbler:10:TSA:cgbaB_g06727t00001" CDS complement(join(23465376..23465928,23466009..23466097, 23466216..23466401,23466530..23466604,23467013..23467195, 23467295..23467343,23467577..23467718,23468663..23468744, 23468827..23468885,23469185..23469251)) /locus_tag="TCM_014608" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Arginosuccinate synthase family isoform 1" /protein_id="EOY22446.1" /db_xref="Phytozome:POPTR_0008s02110.1" /db_xref="TAIR:AT4G24830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SZX3" /translation="MAQLKALSPNSSINLACYGPRRNTLLFSDSLSCSRKLSSFLEVS GRASALHGRAILSNNGSVTLAASNRGIRAVLSSDREMEVSTATKAGGLRGKLNKVVLA YSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKE EFVRDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVSHGCTGKGND QVRFELTFFALNPELNVVAPWREWDITGREDAIEYAKKHNVPVPVTKKSIYSRDRNLW HLSHEGDILEEPANEPKKDMYMMSVDPEDAPDQPEYLEIGIVSGIPVSVNGKNLSPAS LLAELNEIGGRHGVGRIDMVENRLVGMKSRGVYETPGGTILFNAVRELESLTLDRETI QVKDSLALKYAELVYAGRWFDPLRESMDAFMEKITETTTGSVTLKLYKGSVSVTGRTS PHSLYRQDISSFESGQIYDQADAAGFIRLYGLPIRVRAMLEKGI" CDS complement(join(23465376..23465928,23466009..23466097, 23466216..23466401,23466530..23466604,23467013..23467195, 23467295..23467343,23467577..23467686)) /locus_tag="TCM_014608" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Arginosuccinate synthase family isoform 2" /protein_id="EOY22447.1" /db_xref="Phytozome:Glyma05g03190.1" /db_xref="TAIR:AT4G24830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SZX3" /translation="MEVSTATKAGGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEV VCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVRDYIFPCLRAGAIYERKYL LGTSMARPVIAKAMVDVAREVGADAVSHGCTGKGNDQVRFELTFFALNPELNVVAPWR EWDITGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEEPANEPKKDMYM MSVDPEDAPDQPEYLEIGIVSGIPVSVNGKNLSPASLLAELNEIGGRHGVGRIDMVEN RLVGMKSRGVYETPGGTILFNAVRELESLTLDRETIQVKDSLALKYAELVYAGRWFDP LRESMDAFMEKITETTTGSVTLKLYKGSVSVTGRTSPHSLYRQDISSFESGQIYDQAD AAGFIRLYGLPIRVRAMLEKGI" gene complement(23469698..23473734) /locus_tag="TCM_014610" /note="dbxref CacaoGD:Thecc1EG014610" mRNA complement(join(23469698..23470515,23470821..23471050, 23471155..23471423,23471602..23471804,23471898..23472042, 23472168..23472301,23472569..23472682,23473256..23473734)) /locus_tag="TCM_014610" /product="Transducin/WD40 repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014530" /inference="similar to AA sequence:ricco:30147.m014530" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00212t00001" CDS complement(join(23470270..23470515,23470821..23471050, 23471155..23471423,23471602..23471804,23471898..23472042, 23472168..23472301,23472569..23472682,23473256..23473711)) /locus_tag="TCM_014610" /note="dbxref ricco:30147.m014530" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative" /protein_id="EOY22448.1" /db_xref="TAIR:AT3G49180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C3S0" /translation="MIVGTINDCMNDMCINPTPFQGGAKKTQEMALTNLVTFFTTWLS QASFNHACKWLPSLTTVYIYILSVKLFSDIGREMGKNKDALVVCSDRSTGVGITVWEL ETGAQLLHIPTCAAAPHGLLCLRNQFLVASQCNRHGSFGGGSIFIWPLNKPRSPLRSY TMEAIGPLSCTKDGIYIAGGAPSGNAYLWDVANGRLLRTWRAHHKSLKCMVFSDDDSL LICGSNDGIIFVWSMISLLDVEDSGSSPPLLHCLSEHRSSITGLVTISVGARSIFVSS SLDGTCKVWDLVSGRLLQTQVYSTSITAITLHPVEQLLFSGSVDGKIFVNVLDLGPVE DPLVTTEDQAFVLKGHNGSITALTFSGFGLISASEDFTFCLWDTIKWVVARRFNHRKG KYYYILFTERFSSLLIWFYPISNKKEKGKNCSMALWMCTSVTVTLFSIGAVTNMVVIK QSTLLPMSNHQRATNQFCVSLLQKYPEPANSGEGMSTFLSLSACRNQQTSTNFQGNNL LDHLIFDSEREQTPVMMQMKLERSIDDRMWVTSMTKHVMEMNKHLQSRLLDMMQCRLL CPYETDSSPKKKRQKLRTESPGLPEGQSHSAG" mobile_element complement(23474289..23474560) /note="source:CACAO_PIF_E119_scaffold_3 4406 4674" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23474568..23474638) /note="source:CACAO_on_E168_scaffold_10 1064 1136" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(23474727..23474918) /note="source:scaffold_7_CACTA_0795 2842 3041" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23474973..23475500) /note="source:CACAO_Again_on_S_E233_scaffold_7 2 531" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(23475719..23476236) /note="source:scaffold_9_CACTA_0946 17761 18226" /mobile_element_type="transposon:TIR/CACTA" gene 23476575..23481644 /locus_tag="TCM_014611" /note="dbxref CacaoGD:Thecc1EG014611" mRNA join(23476575..23476812,23476938..23477080, 23477422..23477505,23477669..23477748,23478348..23478429, 23479279..23479389,23479496..23479687,23480623..23480720, 23481083..23481644) /locus_tag="TCM_014611" /product="Cyclopropyl isomerase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008514001" /inference="similar to AA sequence:ricco:30147.m014529" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8779t2" CDS join(23476806..23476812,23476938..23477080, 23477422..23477505,23477669..23477748,23478348..23478429, 23479279..23479389,23479496..23479687,23480623..23480720, 23481083..23481296) /locus_tag="TCM_014611" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014529" /codon_start=1 /product="Cyclopropyl isomerase isoform 1" /protein_id="EOY22449.1" /db_xref="TAIR:AT5G50375.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAI3" /translation="MGGEESGNASSSLWLAPNPSKRWGELFFLCYTPFWLTLCLGIVV PYKLYESFTELEYLLLGLVSAVPSFLIPMLFVGKQSYATPMMDLHCFAEIWSIYPYNI QVKLTAAYIGRTDIGSRQVFSQNIILHMTSASLWIMIFSYVGNYFWTHYFFTVLGASY TFPSWKMNDVPHTTFLLTHVCFLFYHVASNMTLRRLRHSITGLPKKIQLATEAAWILA LSYFIAYLETLAISNFPYYDFVDRASMYKVGSLFYAIYFFVSFPMFLRIDEKPGDLWD LPRVAVDSLGAAMLVTIILDLWRIFLGPIVPLTDTRQCIQPGLPWFAGNENVASQNQC AK" mRNA join(<23476963..23477080,23477422..23477505, 23478348..23478389,23479279..23479389,23479496..23479687, 23480623..23480719,23481064..23481639) /locus_tag="TCM_014611" /product="Cycloeucalenol cycloisomerase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008514001" /inference="similar to AA sequence:Phytozome:Glyma06g17990.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc567t7_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8779t2" CDS join(<23476964..23477080,23477422..23477505, 23478348..23478389,23479279..23479389,23479496..23479687, 23480623..23480719,23481064..23481296) /locus_tag="TCM_014611" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cycloeucalenol cycloisomerase, putative isoform 2" /protein_id="EOY22450.1" /db_xref="Phytozome:Glyma06g17990.1" /db_xref="TAIR:AT5G50375.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAI3" /translation="SLWLAPNPSKRWGELFFLCYTPFWLTLCLGIVVPYKLYESFTEL EYLLLGLVSAVPSFLIPMLFVGKADSSLHWKDRYWVKASLWIMIFSYVGNYFWTHYFF TVLGASYTFPSWKMNDVPHTTFLLTHVCFLFYHVASNMTLRRLRHSITGLPKKIQLAT EAAWILALSYFIAYLETLAISNFPYYDFVDRASMYKVGSLFYAIYFFVSFPMFLRLTP FHRIDEKPGDLWDLPRVAVDSLGAAMLVTIILDLWRIFLGPIVPLTDTRQCIQPGLPW FAGNENVASQNQCAK" gene 23481346..23490591 /locus_tag="TCM_014612" /note="dbxref CacaoGD:Thecc1EG014612" mRNA join(23481346..23482132,23482552..23482780, 23483050..23483173,23484307..23484363,23484747..23484938, 23485018..23485095,23485646..23485828,23485956..23486036, 23486520..23486585,23486669..23486761,23487027..23487152, 23487609..23487722,23488379..23488474,23488557..23488654, 23488733..23489181,23489369..23489838,23489926..23490591) /locus_tag="TCM_014612" /product="RNA-metabolising metallo-beta-lactamase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s09780.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008515001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5377t3" CDS join(23481670..23482132,23482552..23482780, 23483050..23483173,23484307..23484363,23484747..23484938, 23485018..23485095,23485646..23485828,23485956..23486036, 23486520..23486585,23486669..23486761,23487027..23487152, 23487609..23487722,23488379..23488474,23488557..23488654, 23488733..23489181,23489369..23489838,23489926..23490021) /locus_tag="TCM_014612" /codon_start=1 /product="RNA-metabolising metallo-beta-lactamase family protein" /protein_id="EOY22451.1" /db_xref="Phytozome:GSVIVT01008515001" /db_xref="TAIR:AT5G63420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GST5" /translation="MKKVKKKRRKNLYTCGKNTRGRNLSCFKNDKQDISPPYKNLHTF THSLNFPLPEAQSSPLLLVSKLLHKNAKCSGFNLHCCFFFFVNLKEQMQLGFLGGLSF SYSLYFTSFKPIKAPTKMAASTAHSLCPYGLYCRPNPRHRYISCSVGSPTPLGTRRTK VPRKKSGRLDGARKSMEDSVQRKMEQFYEGTAGPPLRVLPIGGLGEIGMNCMLVGNYD RYILIDAGVMFPDYDELGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPA LDSHTPIYASSFTMELIKKRLKENGIFVPSRLKIFKTRKRFMAGPFEIEPLRVTHSIP DCCGLVLRCADGTILHTGDWKIDESPLDGKIFDRQFLEDLSKEGVTLMMSDSTNVLSP GRTISESSVADALLRHISAAKGRIITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLR TYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLIIVTTGSQAEPRAALNLASYGSSHS FKLNKEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNEGLHTSGHGYRGELEE VLKIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNG FSSLGKENLQLMYSDGDKAYGTSTELCIDERLRIASDGIIVVSMEILRPQKIDGIMEN SLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLGHMERTVSEVLRKMVRK YSGKRPEVIAIALENPAGVFSDELNERLSGNYNVGFEIPTLRKVVDGHPKRSQPNKIK AEDDSNLHLENTSEQSLEVSDGEVEKLLPEEDTTTSSPDSLERHTPNSEGSDEFWKSF ITSSSPVNNLVNDNNGLVPKKEYKSQLKSDGTASSGDDSEMPSSQPKSSKPAKRNKWK PEEVKKLIKMRGKLHSRFQVVKGRMALWEEISTSLMAEGISRSPGQCKSLWTSLVQKY EESKGEKKSHKEWPYFEDMSKVFSDFEATATK" gene 23494069..23494838 /locus_tag="TCM_014613" /note="dbxref CacaoGD:Thecc1EG014613" mRNA 23494069..23494838 /locus_tag="TCM_014613" /product="Calmodulin like 37" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g03240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033977t1" /inference="similar to AA sequence:Phytozome:Glyma05g03240.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14255t00001" CDS 23494363..23494785 /locus_tag="TCM_014613" /note="paralog of Thecc1EG033977t1" /codon_start=1 /product="Calmodulin like 37" /protein_id="EOY22452.1" /db_xref="Phytozome:Glyma05g03240.1" /db_xref="TAIR:AT1G76640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2CIU9" /translation="MMKGEEYERVLRYFDEDGDGKISASELSRRLGQMGGELLLNEAE AAIEALDSNGDGLLDLEDLIGLMEEVGEEDKLKDLREAFGMYDADGCGFITPKGLKKM LNRLGESKSIDECKVMIKQFDLNGDGVLSFEEFRVMMQ" gene 23495806..23497564 /locus_tag="TCM_014614" /note="dbxref CacaoGD:Thecc1EG014614" mRNA join(23495806..23496266,23496843..23497564) /locus_tag="TCM_014614" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" CDS join(23496085..23496266,23496843..23497191) /locus_tag="TCM_014614" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22453.1" /translation="MLQSLKHQIQGFVLKVYWRTLAATSLGEGTHDQCRLCRGQHDQF QVSAFLCGTCDEFPEHRDNPGASGSPSQGSSFIESPPFIKPISISNQEAPPTEDRKKL VELFQYPFWSDLLVQHQNFLSIYREKERVQLFQDWLWIEQSMSLCLSKTPCIVNRKSL EPFVLGLPWEFTDLAP" mobile_element 23498478..23498642 /note="source:scaffold_8_CACTA_0854 59 213" /mobile_element_type="transposon:TIR/CACTA" gene 23498536..23503826 /locus_tag="TCM_014615" /note="dbxref CacaoGD:Thecc1EG014615" mRNA join(23498536..23499313,23500122..23500213, 23500438..23500507,23500604..23500722,23501718..23501750, 23501964..23502158,23502373..23502456,23502554..23502614, 23502794..23502854,23502949..23503042,23503167..23503239, 23503341..23503423,23503511..23503826) /locus_tag="TCM_014615" /product="Uridine kinase/uracil phosphoribosyltransferase 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008517001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017168t1" /inference="similar to AA sequence:Phytozome:Glyma16g06250.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1884t8" CDS join(23499052..23499313,23500122..23500213, 23500438..23500507,23500604..23500722,23501718..23501750, 23501964..23502158,23502373..23502456,23502554..23502614, 23502794..23502854,23502949..23503042,23503167..23503239, 23503341..23503423,23503511..23503678) /locus_tag="TCM_014615" /note="paralog of Thecc1EG017168t1" /codon_start=1 /product="Uridine kinase/uracil phosphoribosyltransferase 1" /protein_id="EOY22454.1" /db_xref="Phytozome:Glyma16g06250.1" /db_xref="TAIR:AT5G40870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKS0" /translation="MRCCLWYIYACRLQNHKLCFLFLHQNTKIKTKPKSGETRNPSST MDHVMRATSGAHFSGLRPDGIVSSQLTVPQAAEYNAPKQPFVIGVSGGTASGKTTVCG KIIHQLHDHRVVLVNQDSFYRGLTDEEVKLVHKFNFDHPDAFDTEQMLECICKLKSGQ SVHLPIYDFKQHRRRSDSFRQRGRTLQSVLEQYAKFVKPAFDDFILPSKKYADVIIPR GGENHVAIDLIVQHIGTKLGQHNLCKIYPNLNVIQSTFQIRGMHTLIRDRDTNKNDFA FYSDRLIRLVVEHGLGYLPFTEKQVITPTGSVYAGVDFCKKLCGVSIVRSGESMENAL RACCKGIRIGKILIHREGDKGKQLIYEKLPIDISQRHVLLLDPVLATGYSAKQAIQLL LEKGVPESQIIFLNLVSAPEGIHCVCRQFPSVKIVTSEIDVALNEELRVIPGLGEFGD RYFGTDNYSLPIED" mobile_element 23499447..23499509 /note="source:CACAO_Mutator_E39_scaffold_1 4421 4483" /mobile_element_type="transposon:TIR/Mutator" gene complement(23503516..23518786) /locus_tag="TCM_014616" /note="dbxref CacaoGD:Thecc1EG014616" mRNA complement(join(23503516..23504436,23504546..23504650, 23505210..23505269,23505357..23505495,23505866..23506050, 23506136..23506219,23506309..23506431,23506636..23506815, 23506955..23507024,23507127..23507220,23507306..23507381, 23508594..23508683,23508780..23508881,23510160..23510231, 23510747..23510920,23511024..23511094,23511192..23511340, 23513945..23514008,23514139..23514379,23514538..23514629, 23514736..23514857,23516252..23516409,23516512..23516886, 23517041..23517187,23517484..23517600,23517814..23517938, 23518231..23518411,23518514..23518786)) /locus_tag="TCM_014616" /product="ATPase family AAA domain-containing protein 1-A isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014522" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004626t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008524001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5470t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5470t4" CDS complement(join(23504323..23504436,23504546..23504650, 23505210..23505269,23505357..23505495,23505866..23506050, 23506136..23506219,23506309..23506431,23506636..23506815, 23506955..23507024,23507127..23507220,23507306..23507381, 23508594..23508683,23508780..23508881,23510160..23510231, 23510747..23510920,23511024..23511094,23511192..23511340, 23513945..23514008,23514139..23514379,23514538..23514629, 23514736..23514857,23516252..23516409,23516512..23516886, 23517041..23517187,23517484..23517600,23517814..23517938, 23518231..23518411,23518514..23518609)) /locus_tag="TCM_014616" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004626t1" /codon_start=1 /product="ATPase family AAA domain-containing protein 1-A isoform 1" /protein_id="EOY22455.1" /db_xref="Phytozome:GSVIVT01008524001" /db_xref="TAIR:AT4G02480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SGX0" /translation="MVSTRRSGSLSGSKSKRSCSSEDKPPSPKRQKVENAENPMPAAE SSKEMCTSPAVDPGDCGNGDAPIAGDGLNLGKGETSSAVVPVTAPIADGSAPIVLDKG RSSFSTWSICQKQNPNFETSTPWCRLLSQFAQNPNVPICTSNFTIGSSKHCNFQLKDQ AISAMLCKIKHTQQEGSAVAMLESTGSKGSVQVNGTVVKKNTSCALNSGDEVVFGSMG NHAYIFQQLMTEVAVKGAEVQNTVGKFLQLERRSGDTSAVTGATILASLSSLRPDLSR WKSPSQASSKIHQVAEVPTHSVVHDAADVDLDGLEGNSTANIGSDKAAEVGALNKNLP LDCNHDSSIEAGNVLDERNEWARDSQPASTSSMSLRCAVFKEDIHAGILDGRNLEVSF DNFPYYLSENTKNVLIAASFIHLKHKEHAKYTSELTTVNPRILLSGPAGSEIYQEMLT KALANYFGTKLLIFDSHSFLGGLSSKEAELLKDGVNAEKSCTCTKQSPGPTDLAKSLT PTVEAETSSPVAAPSCGPESQPKTEADTMPSSSGSSKNQMFKIGDRVKFMNSTSGGLY SAVSSPRGPPNGVRGKVVLLFEDNPFSKIGVRFDKPVPDGVDLGNICEGGHGFFCNVS DLRLENSSTEDLDRLLINTLFEAVYSESRTSPFILFMKDAEKSLAGNTDSYTTFKCRL EKLPDNVIVIGSHTHTDNRKEKSHPGGLLFTKFGGSQTALLDLAFPDSFGRLHDRGKE VPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDCDAETLKMKGNLNLLQTILSRSG MECEGLETLCIKDQSLSNESAEKVVGWALSHHLMQNPEADADSRLVLSCESIQYGIGI LQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKEL VMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD GLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAANRAKILKVILAKEDLS PEVDFDAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAALAEGKPPPPLSG SADIRPLNMEDFKYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFM" mRNA complement(join(<23506027..23506050,23506136..23506219, 23506309..23506431,23506636..23506815,23506955..23507024, 23507127..23507220,23507306..23507381,23508594..23508683, 23508780..23508881,23510160..23510231,23510747..23510920, 23511024..23511094,23511192..23511340,23513945..23514008, 23514139..23514378,23516520..23516886,23517041..23517187, 23517484..23517600,23517814..23517938,23518231..23518411, 23518514..>23518626)) /locus_tag="TCM_014616" /product="ATPase family AAA domain-containing protein 1-A isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014522" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004626t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008524001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc73t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5470t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8778t1" CDS complement(join(<23506027..23506050,23506136..23506219, 23506309..23506431,23506636..23506815,23506955..23507024, 23507127..23507220,23507306..23507381,23508594..23508683, 23508780..23508881,23510160..23510231,23510747..23510920, 23511024..23511094,23511192..23511340,23513945..23514008, 23514139..23514378,23516520..23516886,23517041..23517187, 23517484..23517600,23517814..23517938,23518231..23518411, 23518514..>23518624)) /locus_tag="TCM_014616" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004626t1" /codon_start=1 /product="ATPase family AAA domain-containing protein 1-A isoform 2" /protein_id="EOY22456.1" /db_xref="Phytozome:GSVIVT01008524001" /db_xref="TAIR:AT4G02480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SGX0" /translation="GNQRVMVSTRRSGSLSGSKSKRSCSSEDKPPSPKRQKVENAENP MPAAESSKEMCTSPAVDPGDCGNGDAPIAGDGLNLGKGETSSAVVPVTAPIADGSAPI VLDKGRSSFSTWSICQKQNPNFETSTPWCRLLSQFAQNPNVPICTSNFTIGSSKHCNF QLKDQAISAMLCKIKHTQQEGSAVAMLESTGSKGSVQVNGTVVKKNTSCALNSGDEVV FGSMGNHAYIFQQLMTEVAVKGAEVQNTVGKFLQLERRSGDTSAVTGATILASLSSLR PDLSRWKSPSQASSKIHQVAEVPTHSVVHDAADVDLDGLEGNSTANIGSDKAAEVGAL NKNLPLDCNHDSSIEGLSSKEAELLKDGVNAEKSCTCTKQSPGPTDLAKSLTPTVEAE TSSPVAAPSCGPESQPKTEADTMPSSSGSSKNQMFKIGDRVKFMNSTSGGLYSAVSSP RGPPNGVRGKVVLLFEDNPFSKIGVRFDKPVPDGVDLGNICEGGHGFFCNVSDLRLEN SSTEDLDRLLINTLFEAVYSESRTSPFILFMKDAEKSLAGNTDSYTTFKCRLEKLPDN VIVIGSHTHTDNRKEKSHPGGLLFTKFGGSQTALLDLAFPDSFGRLHDRGKEVPKATK LLTKLFPNKVTIHMPQDEALLASWKHQLDCDAETLKMKGNLNLLQTILSRSGMECEGL ETLCIKDQSLSNESAEKVVGWALSHHLMQNPEADADSRLVLSCESIQYGIGILQAIQN ESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQ RPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEG EKYVKAVFSLASKIAPSVVFVDEVDSMLGRR" mobile_element complement(23511863..23512398) /note="source:scaffold_5_CACTA_0614 1 442" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23520019..23520960 /note="source:CACAO_MITE_S250_scaffold_10 1 935" /mobile_element_type="transposon:TIR/MITE" mobile_element 23521197..23521322 /note="source:CACAO_Helitron_S_E12_scaffold_1 1 153" /mobile_element_type="transposon:Helitron" mobile_element complement(23525185..23525680) /note="source:scaffold_1_CACTA_0016 9077 9582" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23526183..23526738) /note="source:scaffold_8_CACTA_0863 3384 3933" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23528436..23535986 /note="source:INTACT622_F276_scaffold_7-int 1 7628" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23536532..23536632 /note="source:scaffold_8_CACTA_0855 2477 2594" /mobile_element_type="transposon:TIR/CACTA" gene 23537946..23541109 /locus_tag="TCM_014621" /note="dbxref CacaoGD:Thecc1EG014621" mRNA join(23537946..23538116,23538319..23538445, 23538539..23538655,23538749..23538836,23538943..23539069, 23539185..23539298,23539446..23539607,23540662..23541109) /locus_tag="TCM_014621" /product="Translation elongation factor EF1B/ribosomal protein S6 family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014521" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041041t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008526001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b014127t1a2; alternateUTRof:Thecc1EG014621t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9054t1" mRNA join(23538046..23538116,23538331..23538445, 23538539..23538655,23538749..23538836,23538943..23539069, 23539185..23539298,23539446..23539607,23540662..23541107) /locus_tag="TCM_014621" /product="Translation elongation factor EF1B/ribosomal protein S6 family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014521" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041041t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008526001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9054t1" CDS join(23538360..23538445,23538539..23538655, 23538749..23538836,23538943..23539069,23539185..23539298, 23539446..23539607,23540662..23540663) /locus_tag="TCM_014621" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041041t1" /codon_start=1 /product="Translation elongation factor EF1B/ribosomal protein S6 family protein isoform 1" /protein_id="EOY22457.1" /db_xref="Phytozome:GSVIVT01008526001" /db_xref="TAIR:AT2G18110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48006" /translation="MAVAFYDLGSAAGLKKLDESLLTRSYITGYQASKDDITVYVALS GAPSSCYVNISRWYNHIDALLRISGVSGEGCGVTVEGCAPAEAVATPPAEDSKAAAAE EDDDDDDVDLFGEETEEEKKAAEERAAALKASSKKKESGKSSVLLDVKPWDDETDMKK LEEAVRNIKMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDDLIEEHLTTEPTNE YVQSCDIVAFNKI" CDS join(23538360..23538445,23538539..23538655, 23538749..23538836,23538943..23539069,23539185..23539298, 23539446..23539607,23540662..23540663) /locus_tag="TCM_014621" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041041t1" /codon_start=1 /product="Translation elongation factor EF1B/ribosomal protein S6 family protein isoform 1" /protein_id="EOY22458.1" /db_xref="Phytozome:GSVIVT01008526001" /db_xref="TAIR:AT2G18110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48006" /translation="MAVAFYDLGSAAGLKKLDESLLTRSYITGYQASKDDITVYVALS GAPSSCYVNISRWYNHIDALLRISGVSGEGCGVTVEGCAPAEAVATPPAEDSKAAAAE EDDDDDDVDLFGEETEEEKKAAEERAAALKASSKKKESGKSSVLLDVKPWDDETDMKK LEEAVRNIKMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDDLIEEHLTTEPTNE YVQSCDIVAFNKI" mobile_element complement(23542279..23542383) /note="source:scaffold_2_CACTA_0248 14089 14198" /mobile_element_type="transposon:TIR/CACTA" gene 23542477..23546362 /locus_tag="TCM_014622" /note="dbxref CacaoGD:Thecc1EG014622" mRNA join(23542477..23542671,23543666..23543780, 23544032..23544185,23544406..23544502,23545370..23545458, 23545563..23545631,23546065..23546362) /locus_tag="TCM_014622" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014520" /inference="similar to AA sequence:ricco:30147.m014520" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00933t00001" CDS join(23542557..23542671,23543666..23543780, 23544032..23544185,23544406..23544502,23545370..23545458, 23545563..23545631,23546065..23546124) /locus_tag="TCM_014622" /note="dbxref ricco:30147.m014520" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22459.1" /db_xref="TAIR:AT5G63440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MRN7" /translation="MPKRTTHTYSSEDAAPDGPDSDLFVYYCKHCGSHVLITDTQLQK MPKRKTDKAYVLDKKKHLARLNISEAGKVLLKRGEGKLEKQFRMNCIGCGLFVCYRAE EDLEAASFIYAVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAIT RVNADDVRVTVAAPAARGEANNELLEFMGKVLGLRLSQMTLQRGWNNKSKLLVVEDLS ARQVYEKLLEAVQP" gene 23542669..23543260 /locus_tag="TCM_014623" /note="dbxref CacaoGD:Thecc1EG014623" mRNA 23542669..23543260 /locus_tag="TCM_014623" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1287t11" CDS 23542874..23543143 /locus_tag="TCM_014623" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22460.1" /translation="MPGSLIFYMRWSLIFVLVLLLLIYWIADPNALDKLLCVTVRYYY SIMVKMFNPALFATFRSSYPQVQLVYPWNIRKKVLKFDCSKLVHS" gene complement(23547017..23549151) /locus_tag="TCM_014624" /note="dbxref CacaoGD:Thecc1EG014624" mRNA complement(join(23547017..23547435,23547579..23547646, 23547742..23547844,23547929..23548159,23548656..23548696, 23548899..23548935,23549072..23549151)) /locus_tag="TCM_014624" /product="Ribosomal protein L22p/L17e family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g01110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008866t2" /inference="similar to AA sequence:Phytozome:Glyma18g01110.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8968t1" CDS complement(join(23547370..23547435,23547579..23547646, 23547742..23547844,23547929..23548159,23548656..23548696, 23548899..23548935,23549072..23549074)) /locus_tag="TCM_014624" /note="paralog of Thecc1EG008866t2" /codon_start=1 /product="Ribosomal protein L22p/L17e family protein" /protein_id="EOY22461.1" /db_xref="Phytozome:Glyma18g01110.1" /db_xref="TAIR:AT1G67430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VI3" /translation="MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLIKA KRYLEDVMAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESN AEVKGLDVDSLFISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKQESVKK EPETQLAPRKSKGQSLRSGASS" gene 23549316..23553080 /locus_tag="TCM_014625" /note="dbxref CacaoGD:Thecc1EG014625" mRNA join(23549316..23549518,23549840..23551522, 23551872..23551943,23552063..23552109,23552237..23552494, 23552779..23553080) /locus_tag="TCM_014625" /product="SWIB/MDM2 domain superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008530001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017181t4" /inference="similar to AA sequence:frave:gene06338" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc429t2" mRNA join(23549316..23549518,23549840..23551522, 23552063..23553080) /locus_tag="TCM_014625" /product="SWIB/MDM2 domain superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008530001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017181t4" /inference="similar to AA sequence:frave:gene06338" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:PASA:2:TSA:puevd3b014131t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc429t2" mRNA join(23549359..23549518,23549840..23551522, 23552063..23552109,23552237..23552494,23552779..23552825) /locus_tag="TCM_014625" /product="SWIB/MDM2 domain superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008530001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017181t4" /inference="similar to AA sequence:frave:gene06338" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5375t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc429t2" CDS join(23549934..23551522,23551872..23551943, 23552063..23552109,23552237..23552289) /locus_tag="TCM_014625" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene06338; paralog of Thecc1EG017181t4" /codon_start=1 /product="SWIB/MDM2 domain superfamily protein isoform 1" /protein_id="EOY22462.1" /db_xref="TAIR:AT5G14170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJS7" /translation="MNNNNLPKTFGAPSQFANSGTVAQSQSMPMNNQPQLLSQAQPQP MNNQPQLLSQAQPQTQGGPQFPGHFQLSEPQAQVLAQAQYVQAHAQAQAQAAHSQFQA QVQSQNVSNSNATATPSPVVSTPGSGSAKRSSQKPPSKHSSSSNSNMASLFKTMELTP AAQRKKRKVPERQIPDKVAAMLPECALYTQLLEFEAKVDAALSRKKSDIQQSLKNPPC VQKTLRLYVFNTYSNQGQTDPDKKSTEAPSWSLKIIGRILEDGKDPVVAGKVQKSYPK FSSFFKKITIYLDASLYPDNHVILWESARSPALHEGFEVKRKGDKESTARIRLEMNYM PERFKLSPALAEVLGIEVDTRPRVMAAIWHYVKCKKLQNYEDNSFFACDPPLQKVFGE EKMKFIMVPHKITQHLTPLQPIHLEHRIKLSGNCPVGSTCYDVLVDVPFPLEKEKSAF LANMEKNKDIDASNEVICAAIKKIHEHYQRRAFFLGFSQSPGEFINALIASQSKDLKV FAGDASDNAEKERQSEFYNQPWLVLESCALHSIADHSCCFCFTWKLIEDAVIRYLNRK SMGGKENILSGTLDGKLPQK" CDS join(23549934..23551522,23552063..23552109, 23552237..23552289) /locus_tag="TCM_014625" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene06338; paralog of Thecc1EG017181t4" /codon_start=1 /product="SWIB/MDM2 domain superfamily protein isoform 2" /protein_id="EOY22463.1" /db_xref="TAIR:AT5G14170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJS7" /translation="MNNNNLPKTFGAPSQFANSGTVAQSQSMPMNNQPQLLSQAQPQP MNNQPQLLSQAQPQTQGGPQFPGHFQLSEPQAQVLAQAQYVQAHAQAQAQAAHSQFQA QVQSQNVSNSNATATPSPVVSTPGSGSAKRSSQKPPSKHSSSSNSNMASLFKTMELTP AAQRKKRKVPERQIPDKVAAMLPECALYTQLLEFEAKVDAALSRKKSDIQQSLKNPPC VQKTLRLYVFNTYSNQGQTDPDKKSTEAPSWSLKIIGRILEDGKDPVVAGKVQKSYPK FSSFFKKITIYLDASLYPDNHVILWESARSPALHEGFEVKRKGDKESTARIRLEMNYM PERFKLSPALAEVLGIEVDTRPRVMAAIWHYVKCKKLQNYEDNSFFACDPPLQKVFGE EKMKFIMVPHKITQHLTPLQPIHLEHRIKLSGNCPVGSTCYDVLVDVPFPLEKEKSAF LANMEKNKDIDASNEVICAAIKKIHEHYQRRAFFLGFSQSPGEFINALIASQSKDLKV FAGDASDNAEKERQSEFYNQPWIEDAVIRYLNRKSMGGKENILSGTLDGKLPQK" CDS join(23549934..23551522,23552063..23552132) /locus_tag="TCM_014625" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene06338; paralog of Thecc1EG017181t4" /codon_start=1 /product="SWIB/MDM2 domain superfamily protein isoform 3" /protein_id="EOY22464.1" /db_xref="TAIR:AT5G14170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJS7" /translation="MNNNNLPKTFGAPSQFANSGTVAQSQSMPMNNQPQLLSQAQPQP MNNQPQLLSQAQPQTQGGPQFPGHFQLSEPQAQVLAQAQYVQAHAQAQAQAAHSQFQA QVQSQNVSNSNATATPSPVVSTPGSGSAKRSSQKPPSKHSSSSNSNMASLFKTMELTP AAQRKKRKVPERQIPDKVAAMLPECALYTQLLEFEAKVDAALSRKKSDIQQSLKNPPC VQKTLRLYVFNTYSNQGQTDPDKKSTEAPSWSLKIIGRILEDGKDPVVAGKVQKSYPK FSSFFKKITIYLDASLYPDNHVILWESARSPALHEGFEVKRKGDKESTARIRLEMNYM PERFKLSPALAEVLGIEVDTRPRVMAAIWHYVKCKKLQNYEDNSFFACDPPLQKVFGE EKMKFIMVPHKITQHLTPLQPIHLEHRIKLSGNCPVGSTCYDVLVDVPFPLEKEKSAF LANMEKNKDIDASNEVICAAIKKIHEHYQRRAFFLGFSQSPGEFINALIASQSKDLKV FAGDASDNAEKERQSEFYNQPWIEDAVIRYLNRKSMGGDALGST" gene complement(23552819..23562261) /locus_tag="TCM_014626" /note="dbxref CacaoGD:Thecc1EG014626" mRNA complement(join(23552819..23553198,23556357..23558434, 23562109..23562261)) /locus_tag="TCM_014626" /product="Cytochrome P450 94A2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s09880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004164t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s09880.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09084t00001" mobile_element complement(23553381..23553485) /note="source:scaffold_1_CACTA_0011 7472 7544" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23553426..23553498 /note="source:scaffold_1_CACTA_0011 7470 7543" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23554058..23554119 /note="source:scaffold_2_CACTA_0247 2920 2981" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23554322..23554468) /note="source:scaffold_2_CACTA_0247 3211 3353" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23554895..23555097) /note="source:scaffold_2_CACTA_0247 3005 3218" /mobile_element_type="transposon:TIR/CACTA" CDS complement(23556660..23558186) /locus_tag="TCM_014626" /note="paralog of Thecc1EG004164t1" /codon_start=1 /product="Cytochrome P450 94A2" /protein_id="EOY22465.1" /db_xref="Phytozome:POPTR_0012s09880.1" /db_xref="TAIR:AT3G48520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FMV7" /translation="MVICFFLFVTLGFFLLSLAFSFMQELHSFYAKKSVFAHGPSSYP FLGCLISFYKNRRRLLDWYTDLLSESPSQTIVVRRLGARRTVVTANPANVEYMLKTNF NNFPKGKPFTEILGDLLGCGIFNVDGELWSTQRKLASHEFSTKSLREFVVKTLQEEVE NRLLPLLQEAMESEKVLDLQDVLRRFAFDTICKVSLGHDPCCLDLSKPVPPLVKAFDI ASEISAMRGMAPMFVVWKIKRALNIGSEKKLKEAIKLVQDCVLEIIRNKKRALEAETK CCDDAEDLLSRLLSAGHDEEVVRDMVISFIMAGRDTTSSAMSWLFWLLSKHQNAQNMI VKEVESMLCNGEKELNFEVLKEMNCVKACLCESMRLYPPVAWDSKHALNDDVLPDGTF VEKGDRVTYFPYGMGRMEELWGKDRFEFKPDRWFQESDAENGLLKSVSPFKFPVFQAG PRVCLGKEMAFIQMKYVVASILRRFEIRPVCQEQPVFVPLLTAHMAGGLNVLVRRRVS " mobile_element complement(23560331..23560457) /note="source:CACAO_on_S_E46_scaffold_2 1309 1426" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(23562978..23563076) /note="source:scaffold_3_CACTA_0377 2483 2579" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23564633..23565339) /note="source:MITE_Unknown_5_3 764 1476" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(23565563..23566171) /note="source:CACAO_MITE_S248_scaffold_10 1 541" /mobile_element_type="transposon:TIR/MITE" mobile_element 23565967..23566222 /note="source:CACAO_on_E33_A_scaffold_3 7391 7643" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23566207..23566801) /note="source:CACAO_MITE_S248_scaffold_10 2 596" /mobile_element_type="transposon:TIR/MITE" mobile_element 23566569..23566837 /note="source:CACAO_on_E33_A_scaffold_3 7363 7642" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23566806..23566874) /note="source:CACAO_MITE19_scaffold_2 349 417" /mobile_element_type="transposon:TIR/MITE" mobile_element 23566924..23571746 /note="source:INTACT639_F76_scaffold_3-int 1 4823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23571789..23572620 /note="source:CACAO_on_E137_scaffold_4 1 831" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23573188..23573703 /note="source:MITE_Unknown_5_4 710 1232" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(23573667..23573808) /note="source:MITE_Unknown_5_3 1 153" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(23573848..23573893) /note="source:CACAO_M_E34409_F73_scaffold_5 2281 2326" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23575659..23580494) /locus_tag="TCM_014628" /note="dbxref CacaoGD:Thecc1EG014628" mRNA complement(join(23575659..23575950,23576184..23576287, 23577019..23577089,23577385..23577505,23578476..23578521, 23580137..23580392)) /locus_tag="TCM_014628" /product="SAP domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014516" /inference="similar to AA sequence:ricco:30147.m014516" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8815t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8815t3" mRNA complement(join(23575696..23575910,23576184..23576287, 23577019..23577089,23577385..23577505,23578476..23578522)) /locus_tag="TCM_014628" /product="SAP domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014516" /inference="similar to AA sequence:ricco:30147.m014516" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc133t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8815t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc132t2" CDS complement(join(23575800..23575910,23576184..23576287, 23577019..23577089,23577385..23577505,23578476..23578515)) /locus_tag="TCM_014628" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014516" /codon_start=1 /product="SAP domain-containing protein isoform 3" /protein_id="EOY22468.1" /db_xref="TAIR:AT5G63460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6IDA6" /translation="MRVYICEHNTTPPESQLIKTNQQNILIRSLMLNNKKGDSSSKDV KVSAEGPRKRAAERVMDSRASAKKANTQSGSRPEGSSSRATEKDYHSLTVERLRALLK ENGLSPKGKKLRNLSDAVRDKRSRRRSCFLWCILRRWPQKGRVDLE" CDS complement(join(23575894..23575950,23576184..23576287, 23577019..23577089,23577385..23577505,23578476..23578521, 23580137..23580256)) /locus_tag="TCM_014628" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014516" /codon_start=1 /product="SAP domain-containing protein, putative isoform 1" /protein_id="EOY22466.1" /db_xref="TAIR:AT5G63460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6IDA6" /translation="MEGSSSQPFDHDQTPSGASKFLCNLPSRGHLSSTVIASNLGGMR VYICEHNTTPPESQLIKTNQQNILIRSLMLNNKKGDSSSKDVKVSAEGPRKRAAERVM DSRASAKKANTQSGSRPEGSSSRATEKDYHSLTVERLRALLKENGLSPKGKKDELIAR LKCVNGAAQKSE" mRNA complement(join(23575925..23576287,23577019..23577089, 23577385..23577505,23578476..23578521,23580137..23580494)) /locus_tag="TCM_014628" /product="SAP domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014516" /inference="similar to AA sequence:ricco:30147.m014516" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc134t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8815t3" CDS complement(join(23576103..23576287,23577019..23577089, 23577385..23577505,23578476..23578521,23580137..23580256)) /locus_tag="TCM_014628" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014516" /codon_start=1 /product="SAP domain-containing protein isoform 2" /protein_id="EOY22467.1" /db_xref="TAIR:AT5G63460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6IDA6" /translation="MEGSSSQPFDHDQTPSGASKFLCNLPSRGHLSSTVIASNLGGMR VYICEHNTTPPESQLIKTNQQNILIRSLMLNNKKGDSSSKDVKVSAEGPRKRAAERVM DSRASAKKANTQSGSRPEGSSSRATEKDYHSLTVERLRALLKENGLSPKGKKACSCES YLGNCLESLLLILSLWIDHV" mobile_element complement(23580827..23581199) /note="source:CACAO_PIF_E119_scaffold_3 4229 4637" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23583151..23583374 /note="source:scaffold_4_CACTA_0511 3172 3361" /mobile_element_type="transposon:TIR/CACTA" gene 23585628..23589646 /locus_tag="TCM_014630" /note="dbxref CacaoGD:Thecc1EG014630" mRNA join(23585628..23585942,23586444..23586616, 23587142..23587318,23587427..23587702,23588653..23588816, 23588935..23589646) /locus_tag="TCM_014630" /product="SNF1-related protein kinase regulatory subunit gamma 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10680.1" /inference="similar to AA sequence:ricco:30147.m014515" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02082t00001" CDS join(23585756..23585942,23586444..23586616, 23587142..23587318,23587427..23587702,23588653..23588816, 23588935..23589232) /locus_tag="TCM_014630" /note="dbxref ricco:30147.m014515" /codon_start=1 /product="SNF1-related protein kinase regulatory subunit gamma 1" /protein_id="EOY22469.1" /db_xref="TAIR:AT3G48530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LBB2" /translation="MASSVQLRRENSMQESPRSPEARVGMQVEDLWDVQEPQLSPTEK LNACFESIPVSAFPPAPQGIEIKSDASLAEAVQILAQNKILSAPVVDVDAPEDATWID RYIGIVEFAGIAVWILQQSEPPSPRSPSSPSGADFAVAANGITSAAGLGTLSPEDAAI TSGNFFEALTSSEFYKKTKVRDISGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSVPV LDLGDGQINNIITQSAVIHMLAECTGLHWFESWGTKKLSEIGLPSMSLKEIITVHEDE PVLQAFKLMRKMRIGGIPVVERGGKKAVGNISLRDIQFLLTAPEIYHDYRYITAKNFL IAVKKYLEKHDKRSPMLSGMITCKRDKTIKELIQTLDLEKIHRVYVVDDEGNLEGVIT LRDIISRLVHEPRGYFGDFFDGVLPLPENSRV" gene complement(23590313..23591460) /locus_tag="TCM_014631" /note="dbxref CacaoGD:Thecc1EG014631" mRNA complement(23590313..23591460) /locus_tag="TCM_014631" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS complement(23590624..23591028) /locus_tag="TCM_014631" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22470.1" /translation="MEMAAADGADVNQFYPLGNSPRSPKCNLACGKIDSLCNLVWFHW NFVDKADIAAAVSRRLLVYKLRNSRTIVAYSCSIRNTTFPATMRKIVYNENGCSGKVG SLLAMNVPGGLLYNLLLNLYPEPPRASIQFHF" gene complement(23592240..23596420) /locus_tag="TCM_014632" /note="dbxref CacaoGD:Thecc1EG014632" mRNA complement(join(23592240..23593301,23593950..23596420)) /locus_tag="TCM_014632" /product="Exocyst subunit exo70 family protein F1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014514" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029172t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s09910.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5434t1" mRNA complement(join(23592240..23593301,23593451..23596420)) /locus_tag="TCM_014632" /product="Exocyst subunit exo70 family protein F1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014514" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029172t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s09910.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:PASA:2:TSA:puevd3b014139t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5434t1" CDS complement(join(23593180..23593301,23593950..23595891)) /locus_tag="TCM_014632" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029172t1" /codon_start=1 /product="Exocyst subunit exo70 family protein F1 isoform 1" /protein_id="EOY22471.1" /db_xref="Phytozome:POPTR_0012s09910.1" /db_xref="TAIR:AT5G50380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K8Y6" /translation="MATTTTSLGAGGEDRVMATAQQIVKSLNTPKEVREDMLLIFSSF DNRLSNISDLINDDSNKTSVRFDAAEKVILRWDSSSSNPDASRHSLPWEDSPDEAAEY LSAVDEILQLVVDMSIRSNNEIMDRAETAIQMAMSRLEDEFRLILIRNTVPLDLDRLY GSIRRVSLSFAANEGEIDEEFESFGEVDSERGCFHERGASLGDDLCVDLINADAVVEL KEIADRMIRSGYEKECVQGYSNVRRDALDECLVILGVEKLSIEEVQKIEWRALDEKMK KWIQAVKISARVLLNGEKRLCDQIFNGSDSIKEICFNETAKGCMMQLMNFGEAVAIGK RSSEKLFRILDMYDVLADALPDFEMMVIDEFVCSEAKGVLAGLGDAAKGTFVEFENAV KNEASKKPMQKGEIHPLTRYVMNYVKLLVDYSETLNSLLECDEDEADGLQNEDSELDT MTPFAKRLLLLISSLESNLEEKSKLYEDGALHCTFLMNNILYIVQKVKDSELGKLLGD NWVRKRRGQIRQYATSYLRACWTKALNCLKDEGIGGSSNNASKVALKERFKSFNACFE EIYRIQTAWKVPDSQLREELRISISEKVIPAYRSFMGRFGSQLESGRHAGKYIKYTPE DLENYLLDLFEGSPLVLHHMRRKGKEKSLGPFQVWPCSLEKNCFLQEAFIKCDRMSNQ AGKNV" CDS complement(23593942..23595891) /locus_tag="TCM_014632" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029172t1" /codon_start=1 /product="Exocyst subunit exo70 family protein F1 isoform 2" /protein_id="EOY22472.1" /db_xref="Phytozome:POPTR_0012s09910.1" /db_xref="TAIR:AT5G50380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K8Y6" /translation="MATTTTSLGAGGEDRVMATAQQIVKSLNTPKEVREDMLLIFSSF DNRLSNISDLINDDSNKTSVRFDAAEKVILRWDSSSSNPDASRHSLPWEDSPDEAAEY LSAVDEILQLVVDMSIRSNNEIMDRAETAIQMAMSRLEDEFRLILIRNTVPLDLDRLY GSIRRVSLSFAANEGEIDEEFESFGEVDSERGCFHERGASLGDDLCVDLINADAVVEL KEIADRMIRSGYEKECVQGYSNVRRDALDECLVILGVEKLSIEEVQKIEWRALDEKMK KWIQAVKISARVLLNGEKRLCDQIFNGSDSIKEICFNETAKGCMMQLMNFGEAVAIGK RSSEKLFRILDMYDVLADALPDFEMMVIDEFVCSEAKGVLAGLGDAAKGTFVEFENAV KNEASKKPMQKGEIHPLTRYVMNYVKLLVDYSETLNSLLECDEDEADGLQNEDSELDT MTPFAKRLLLLISSLESNLEEKSKLYEDGALHCTFLMNNILYIVQKVKDSELGKLLGD NWVRKRRGQIRQYATSYLRACWTKALNCLKDEGIGGSSNNASKVALKERFKSFNACFE EIYRIQTAWKVPDSQLREELRISISEKVIPAYRSFMGRFGSQLESGRHAGKYIKYTPE DLENYLLDLFEGSPLVLHHMRRKGT" gene complement(23597838..23601009) /locus_tag="TCM_014633" /note="dbxref CacaoGD:Thecc1EG014633" mRNA complement(join(23597838..23598262,23599048..23599186, 23599296..23599416,23599610..23599699,23599793..23599963, 23600631..23600959)) /locus_tag="TCM_014633" /product="Far1-related sequence 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008536001" /inference="similar to AA sequence:ricco:30147.m014513" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1847t5_C1; alternateUTRof:Thecc1EG014633t1; inference alignment:Newbler:10:TSA:cgbaB_g00284t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1623t10_C1" mRNA complement(join(23597838..23598260,23599610..23599699, 23599793..23599963,23600631..23600954)) /locus_tag="TCM_014633" /product="Far1-related sequence 3 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008536001" /inference="similar to AA sequence:ricco:30147.m014513" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1623t10_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1623t10_C1; inference alignment:Newbler:10:TSA:cgbaB_g00284t00001" mRNA complement(join(23597873..23598262,23599114..23599186, 23599296..23599416,23599610..23599699,23599793..23599963, 23600631..23601009)) /locus_tag="TCM_014633" /product="Far1-related sequence 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008536001" /inference="similar to AA sequence:ricco:30147.m014513" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00284t00001; inference alignment:Newbler:10:TSA:cgbaB_g00284t00001" CDS complement(join(23598168..23598260,23599610..23599699, 23599793..23599963,23600631..23600804)) /locus_tag="TCM_014633" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014513" /codon_start=1 /product="Far1-related sequence 3 isoform 3" /protein_id="EOY22475.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3Q8" /translation="MERTLWGHLPLLVRANSKESVEYILQSLWKTRKTGLDADDRRLI CEMLQLQNDSDLDPLLVCLRMLIRRCVYENISKDDIQKLFPHEVLPELQRLLTLLLQK FQKEWRAEIHKDEVSLPRLKAMTWNMGNQDSEVTEPVAVINLKFLLIATVPCGRRKSA LLWFYLPMLLTVVES" CDS complement(join(23599182..23599186,23599296..23599416, 23599610..23599699,23599793..23599963,23600631..23600804)) /locus_tag="TCM_014633" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014513" /codon_start=1 /product="Far1-related sequence 3 isoform 1" /protein_id="EOY22473.1" /translation="MERTLWGHLPLLVRANSKESVEYILQSLWKTRKTGLDADDRRLI CEMLQLQNDSDLDPLLVCLRMLIRRCVYENISKDDIQKLFPHEVLPELQRLLTLLLQK FQKEWRAEIHKDEVSLPRLKAMTWNMGNQDSEVTEPVAVINLKLQNDTQAPQEELDLK FQLAKETLDTMLKSMYCIRDQLSNLG" CDS complement(join(23599182..23599186,23599296..23599416, 23599610..23599699,23599793..23599963,23600631..23600804)) /locus_tag="TCM_014633" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014513" /codon_start=1 /product="Far1-related sequence 3 isoform 1" /protein_id="EOY22474.1" /translation="MERTLWGHLPLLVRANSKESVEYILQSLWKTRKTGLDADDRRLI CEMLQLQNDSDLDPLLVCLRMLIRRCVYENISKDDIQKLFPHEVLPELQRLLTLLLQK FQKEWRAEIHKDEVSLPRLKAMTWNMGNQDSEVTEPVAVINLKLQNDTQAPQEELDLK FQLAKETLDTMLKSMYCIRDQLSNLG" gene complement(23601317..23603913) /locus_tag="TCM_014635" /note="dbxref CacaoGD:Thecc1EG014635" mRNA complement(23601317..23603913) /locus_tag="TCM_014635" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10720.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10720.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc298t1" CDS complement(23601521..23603629) /locus_tag="TCM_014635" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY22476.1" /db_xref="Phytozome:POPTR_0015s10720.1" /db_xref="TAIR:AT5G50390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FK33" /translation="MEIPLAQYQCMTLDQMQTSCSFPSSNNKVFTTKPFFSGYCFRFD RRKRSYPFDKIMCFSLEHGLQPRRPKPKPSRNTNPEMKETEETQVRKPSVGLCSQIEK LALCNRYREALELFEILELEGGFDVGLSTYDALVSACIGLGSVRAVKRVFNYMINNGF EPDQYMSNRVLLMHVKCGMMIDARKLFDEMPERNLVSWNTIIVGLVDFGDYLEAFRLF LIMWEEFSDCGSRTFATMIRASAGLELISVGRQLHSCAVKMGVDEDIFVSCALIDMYS KCGSIEDAQWVFADMPEKTTVGWNSIIAGYALHGYSEEALSMFYAMHDSGVKMDHFTF SMIIRICSRLASIEHAKQAHAGLVRYGFGLDIVANTALVDFYSKWGRIEDARRVFDRM PCKNTISWNALIAGYGNHGRGAEAVDLFEKMLRERMRPNHITFLAVLSACSYSRLFER GWEIFQSMSRDHKIKPRAMHYACMIELLGQEGLLDEAFALIRGSPFKPTANMWAALLT ASRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNQSGKLKEAAAVLQTLKRKGLR MLPACSWIEVNKQSHVFLSGDKCHVQTNEIYQKVDSLVLEISKHGYVPEEKTLLPDVD EQEQRVLLYHSEKLAIAFGLINTTNGLPLQIVQSHRICNDCHNAIKLIALVTRREIVV RDASRFHHFKDGSCSCGDYW" gene 23603866..23608773 /locus_tag="TCM_014636" /note="dbxref CacaoGD:Thecc1EG014636" mRNA join(23603866..23604468,23604618..23604804, 23604903..23605153,23606136..23606250,23606746..23606838, 23607388..23607531,23608244..23608773) /locus_tag="TCM_014636" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10740.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008538001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01809t00002" mRNA join(23604061..23604468,23604618..23604804, 23604903..23605014,23605102..23605153,23606136..23606250, 23606746..23606838,23607388..23607531,23608244..23608753) /locus_tag="TCM_014636" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10740.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008538001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01809t00002; inference alignment:Newbler:10:TSA:cgbaB_g01809t00002" CDS join(23604107..23604468,23604618..23604804, 23604903..23605153,23606136..23606250,23606746..23606838, 23607388..23607531,23608244..23608360) /locus_tag="TCM_014636" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22477.1" /db_xref="Phytozome:GSVIVT01008538001" /db_xref="TAIR:AT4G24880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFA8" /translation="MAPHDLRRPFKRAAISDQQKRRELSLLRQEQNRRDAQQQARCLA SSILSLQSPLPESEPEQSDIELETAPEIEKESGTLSKDLDVPRASKLRGPEVRKWFAR QLMLPEWMIDVPDRLSQDWYVYARPAGKRCFVVSSNGTTVSRQRNGSILHHFPSALPA GAKTRDSSGSGQSYCILDCIFHELDQTYYVIDMVCWNGYSLYDCTSEFRFFWLNSKIE ESGACNPSSYYHKFRFSTVPVYTCDQNGLYAAYTGVVPYVKDGLLFYNKHAHYQTGNT PLVLVWKDENCSQYVIDTDSKGEIPSQQQVVLELQDNGKLVTSDDPPVLFGYLDGDII QKSGLHSGNLLRFAVSDGGLSFVDGKLDKADLNYLGKANRGRAFADSYSKVVFQFTVR HSPLKIDDLLASINSPDDQEKKPCDVEMVG" CDS join(23604107..23604468,23604618..23604804, 23604903..23605014,23605102..23605153,23606136..23606250, 23606746..23606838,23607388..23607531,23608244..23608360) /locus_tag="TCM_014636" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY22478.1" /db_xref="Phytozome:GSVIVT01008538001" /db_xref="TAIR:AT4G24880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFA8" /translation="MAPHDLRRPFKRAAISDQQKRRELSLLRQEQNRRDAQQQARCLA SSILSLQSPLPESEPEQSDIELETAPEIEKESGTLSKDLDVPRASKLRGPEVRKWFAR QLMLPEWMIDVPDRLSQDWYVYARPAGKRCFVVSSNGTTVSRQRNGSILHHFPSALPA GAKTRDSSGSGQSYCILDCIFHELDQTYYVIDMVCWNGYSLYDCTSEFRFFWLNSKIE ESAYTGVVPYVKDGLLFYNKHAHYQTGNTPLVLVWKDENCSQYVIDTDSKGEIPSQQQ VVLELQDNGKLVTSDDPPVLFGYLDGDIIQKSGLHSGNLLRFAVSDGGLSFVDGKLDK ADLNYLGKANRGRAFADSYSKVVFQFTVRHSPLKIDDLLASINSPDDQEKKPCDVEMV G" gene complement(23608588..23614875) /locus_tag="TCM_046740" /note="dbxref CacaoGD:Thecc1EG046740" mRNA complement(join(23608588..23609183,23609534..23609843, 23610684..23610809,23610919..23611124,23611615..23611747, 23611845..23611926,23612563..23612692,23613164..23613256, 23613446..23613568,23613673..23613742,23613950..23614041, 23614445..23614875)) /locus_tag="TCM_046740" /product="Purple acid phosphatase 27" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400021640" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046741t1" /inference="similar to AA sequence:ricco:30147.m014510" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc317t13" CDS complement(join(23608878..23609183,23609534..23609843, 23610684..23610809,23610919..23611124,23611615..23611747, 23611845..23611926,23612563..23612692,23613164..23613256, 23613446..23613568,23613673..23613742,23613950..23614041, 23614445..23614615)) /locus_tag="TCM_046740" /note="dbxref ricco:30147.m014510; paralog of Thecc1EG046741t1" /codon_start=1 /product="Purple acid phosphatase 27" /protein_id="EOY22479.1" /db_xref="TAIR:AT5G50400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q687E1" /translation="MIWFWVFLLLAANLNLGWAHINGAGEHPLAKINILKATLALHNS ATVKAQPVLLGLKGEDTQWVNVDFMNPNSSVNDWVGVFSPAKFNPSTCPPVNDPKEQL PYICSAPIKYKYANESSSGYTKTGRGSLRFQLINQRADFSFALFSGGLSDPKLVAISN FISFANPKAPLYPRLAQGKSWNEMTVTWTSGYDIDEAEPFVEWGRKGNLQLRSPAGTL TFKQNSMCGSPARTVGWRDPGFIHTSFLKNLWPNYEYTYRMGHLLSNGSIVWSKIYSF KSSPYPGQDSLQRVIIFGDMGKAERDGSNEYCNYQPGSLNTTDQLIRDLSNIDIVFHI GDLSYSNGYISQWDQFTAQVEPIASTVPYMIASGNHERDWPNTGSFYDTTDSGGECGV PAETIFYFPAENRAKFWYSTDYGLFHFCIADSEHDWREGSEQYRFIEQCLASADRHRQ PWLIFAAHRVLGYSSDYWYGQEGSFEEPMGRESLQKLWQKYKVDIAFYGHVHNYERTC PIYQNQCVNEEKNHYSGVVNGTIHVVVGGGGSHLSEFSEVTPNWSLYRDYDWGFVKLT AFNQSSLLFEYKKSRDGKVHDSFTISRDYRDVLACVHDGCEATTLAS" mobile_element complement(23615475..23615520) /note="source:CACAO_M_S_E18487_F233_scaffold_3 1217 1262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23615484..23615527 /note="source:scaffold_3_CACTA_0388 9633 9676" /mobile_element_type="transposon:TIR/CACTA" gene complement(23615531..23620933) /locus_tag="TCM_046741" /note="dbxref CacaoGD:Thecc1EG046741" mRNA complement(join(23615531..23615894,23616094..23616397, 23616565..23616690,23616806..23617011,23617706..23617838, 23617929..23618010,23618436..23618565,23618810..23618902, 23619029..23619151,23619238..23619304,23619556..23619647, 23620306..23620933)) /locus_tag="TCM_046741" /product="Purple acid phosphatase 27" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400021640" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046740t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10790.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5365t1" CDS complement(join(23615589..23615894,23616094..23616397, 23616565..23616690,23616806..23617011,23617706..23617838, 23617929..23618010,23618436..23618565,23618810..23618902, 23619029..23619151,23619238..23619304,23619556..23619647, 23620306..23620509)) /locus_tag="TCM_046741" /note="paralog of Thecc1EG046740t1" /codon_start=1 /product="Purple acid phosphatase 27" /protein_id="EOY22480.1" /db_xref="Phytozome:POPTR_0015s10790.1" /db_xref="TAIR:AT5G50400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A3C0F4" /translation="MERFLSMEYVFILLSLLQCLKFGPAAAVAHAGNGDGVQPLSKIA IHKAVYALHENASVTAHPVVLGTKGGDSDWVTVEVECPKPSDDDWIAVFSPASFNSST CPPSGDMEESPHICSAPIKYKYANDSNAEYNKTGKASLKFQLINQREDISFALFSGGL SDPKLVAVSNVISFANPKAPLYPRLSQGKSWNEMTVTWTSGYNIIEAVPFVEWGLKGE SQTRSPAGTLTFHQNSMCAPPARTVGWRDPGFIHTSFLKDLWPNSVYTYKLGHKLLNG SHVWSKSYSFKSSPYPGQDSLQRVVIFGDMGKAERDGSNEYNNYQPGSLNTTDQLIKD LENIDIVFHIGDITYSNGYISQWDQFTSQVEPIASTVPYMIASGNHERDAPNSGSFYD GNDSGGECGVVAETMFYVPAENRAKFWYSTDYGMFHFCIADSEHDWREGSEQYEFIEK CLASADRQKQPWLIFAAHRVLGYSSSYWRSGSFGEPMGRESLQGLWQKYKVDIAFFGH IHNYERTCPVYQEQCVNTEKSHYSGAVNGTIHIVVGGGGSHLSGFGPIQTSWSLYKDS DFGFVKLTAFNHSSLLFEYKKSSDGKVYDSFTIARDYRDVLACVHDGCEPTTLGS" gene complement(23622162..23625260) /locus_tag="TCM_014639" /note="dbxref CacaoGD:Thecc1EG014639" mRNA complement(join(23622162..23622511,23622601..23622679, 23623543..23623624,23624178..23624423,23624951..23625260)) /locus_tag="TCM_014639" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29736.m002039" /inference="similar to AA sequence:ricco:29736.m002039" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05724t00001" CDS complement(join(23622460..23622511,23622601..23622679, 23623543..23623624,23624178..23624423,23624951..23625238)) /locus_tag="TCM_014639" /note="dbxref ricco:29736.m002039" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22481.1" /db_xref="TAIR:AT5G50410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FK31" /translation="MSNSAAQTLDDESRPSDQGPHNQLREDQQAQEWETLARAWVSAF PEAKAVNVSQVEVWIDSNFGSLPADLQSMPRSELIDRLLSIQNYLRFPSQSQEKEPSQ PDLPPARFQRTDQWIPVYSWLESLDTDEVVKSKDISDWLNENPQVKDQLCSRHSRYHL MHYIKKCHLKIIKRREKKVGLQPSNKETALKVRKDVVAKQPAPVLSNPLNNLPKDSDL YLAKRNEALRKYEILLELEKKLSPMFSSKK" gene complement(23625467..23630070) /locus_tag="TCM_014640" /note="dbxref CacaoGD:Thecc1EG014640" mRNA complement(join(23625467..23626441,23627005..23627076, 23627163..23627270,23627455..23627547,23627697..23627780, 23627902..23627978,23628101..23628174,23628306..23628419, 23628762..23628841,23628944..23629036,23629128..23629256, 23629373..23630070)) /locus_tag="TCM_014640" /product="Serine/threonine-protein kinase Rio1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10810.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10810.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc992t8" CDS complement(join(23625968..23626441,23627005..23627076, 23627163..23627270,23627455..23627547,23627697..23627780, 23627902..23627978,23628101..23628174,23628306..23628419, 23628762..23628841,23628944..23629036,23629128..23629256, 23629373..23629837)) /locus_tag="TCM_014640" /codon_start=1 /product="Serine/threonine-protein kinase Rio1" /protein_id="EOY22482.1" /db_xref="Phytozome:POPTR_0015s10810.1" /db_xref="TAIR:AT5G37350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SK34" /translation="MGQPAHLRKQNFLPPFLGFKRTAKAEAVTGQRSFFFFSSRSLSK CKSYIGHEKRKKKKSGMSKVEEKPEDAPNEAAEYEEEEEDLSWSSDSEIGEALDYLDS KDDDESVDGAFSLNSRRPNAHGGLHSRPNSSALQPLSNRNQKFSNHIRASPLEEWEGR LNVGMSNSVTTAIRESVREMAIGKIKNTEKADRATVEQAIDPRTRMVLFKMLNRGVFH DINGCISTGKEANVYHATKSDGQELAIKVYKTSVLVFKDRDRYVQGDYRFRYGYCKHN PRKMVKTWAEKEMRNLMRLKAAGIRCPTPFLLRLHVLVMEFIGKAGWAAPRLKDASLS LDKLRECYVEMILAMRTLYQKCKLVHGDLSEYNILYFEGHLYIIDVSQAVDLDHPHAL DFLREDCVHVSDFFKKHGVAVMTIRELFDFIVDPTITDDSVDSYLEEVQQKILARGDM SVEDEIADSVFVQSYIPKALDHVKNAEEDVIRITSGKDTADLYYKTITGLKEALPKVH SSPAEQQQQDANTRPLERSSIDPAGGSNYQESESEAESASDSETGGDEENLSGSEEEG PSPDNVAQAPVDKRAARKENKKKVKEEKREARKTKVPKAVKKRKKKLAKAHKTR" mobile_element complement(23632517..23632742) /note="source:CACAO_PIF_E144_scaffold_10 2127 2357" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23633475..23633692 /note="source:scaffold_2_CACTA_0245 1655 1860" /mobile_element_type="transposon:TIR/CACTA" gene complement(23635373..23637095) /locus_tag="TCM_014641" /note="dbxref CacaoGD:Thecc1EG014641" mRNA complement(join(23635373..23636445,23636535..23636697, 23636802..23637095)) /locus_tag="TCM_014641" /product="HCP-like superfamily protein with MYND-type zinc finger" /inference="alignment:exonerate- protein:2:ricco:30147.m014507" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008826t1" /inference="similar to AA sequence:ricco:30147.m014507" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08463t00001" CDS complement(join(23635690..23636445,23636535..23636697, 23636802..23636953)) /locus_tag="TCM_014641" /note="dbxref ricco:30147.m014507; paralog of Thecc1EG008826t1" /codon_start=1 /product="HCP-like superfamily protein with MYND-type zinc finger" /protein_id="EOY22483.1" /db_xref="TAIR:AT1G67340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZP6" /translation="MLQKKKQRTTRKITDKSDLFDGVPDDLVVSILCKLSSSVSCPTD FVNILLTCKRLNRLGLHPLVLSKAGSKALAVKAKNWSDSAHRFLKHCVSAGNIEACYT LGMIRFYCLQNRGSGASLMAKAAMKSHAPALYSLAVIQFNGSGGSKNNKDLRAGVALC ARAAFLGHVDALRELGHCLQDGYGVRQNITEGRRLLIQANARELASSLNTVVKRQLKQ QHQRRLNYQHYAYMTGSGCPLLSDFGCNVPVPEGHPVHVFLKEWFESGLGELGQGLRL CSHKGCGRPETRAHEFRRCSVCGTVNYCSRGCQALDWKLRHKVECGPMERWQEEGGNG NGGDGGAGGMEEVGEAEDLAIG" gene 23646218..23652643 /locus_tag="TCM_014642" /note="dbxref CacaoGD:Thecc1EG014642" mRNA join(23646218..23646392,23646924..23646992, 23647109..23647222,23647366..23647494,23647722..23647790, 23648340..23648492,23648636..23648672,23649206..23649288, 23649417..23649491,23649881..23649955,23650183..23650269, 23650347..23650465,23650773..23650819,23651411..23652643) /locus_tag="TCM_014642" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10840.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008543001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5464t3" CDS join(23646303..23646392,23646924..23646992, 23647109..23647222,23647366..23647494,23647722..23647790, 23648340..23648492,23648636..23648672,23649206..23649288, 23649417..23649491,23649881..23649955,23650183..23650269, 23650347..23650465,23650773..23650819,23651411..23651550) /locus_tag="TCM_014642" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY22484.1" /db_xref="Phytozome:GSVIVT01008543001" /db_xref="TAIR:AT1G05350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23034" /translation="MEVELKEMLDDLQSLRQSLSDPTLHASIDKLQSCVDHLTHLAKS VPVRRSKVKDMSAEVVDSNPYSRLMALQRMGIVENYERIREFSVAIVGIGGVGSVAAE MLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLSDINPDVVLESYT LNITTVQGFETFMSSLRNKTFCPSKEGSGVDLVLSCVDNYEARMVVNQACNELNQTWM ESGVSEDAVSGHIQLLIPGETACFACAPPLVVASGVDERTLKREGVCAASLPTTMGVV AGLLVQNTLKFLLKFGHVSPYLGYSSLKDYFPTMAMKPNPQCSNAACLERQKEYILAK PARDAEAKAKMEAEASTAAADLPLHADNEWNISVVDDSGLESTGGTSSDALPEGLIHE LPSADEFQKPPASEALDTGIVDLEDLRRQLEALNAD" mobile_element 23649577..23649628 /note="source:CACAO_M_E427_F230_scaffold_1 1076 1127" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23651738..23654430) /locus_tag="TCM_014643" /note="dbxref CacaoGD:Thecc1EG014643" mRNA complement(join(23651738..23652304,23652452..23652664, 23652811..23652864,23653116..23653179,23653433..23653470, 23653547..23653605,23653726..23653765,23653911..23653986, 23654086..23654430)) /locus_tag="TCM_014643" /product="Cytidine/deoxycytidylate deaminase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10850.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008544001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13185t00001" CDS complement(join(23652248..23652304,23652452..23652664, 23652811..23652864,23653116..23653179,23653433..23653470, 23653547..23653605,23653726..23653765,23653911..23653986, 23654086..23654273)) /locus_tag="TCM_014643" /codon_start=1 /product="Cytidine/deoxycytidylate deaminase family protein" /protein_id="EOY22485.1" /db_xref="Phytozome:GSVIVT01008544001" /db_xref="TAIR:AT3G48540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PEH3" /translation="MNSREVALVSTATFVGALASAFAYHLFLSSPKKQSSRADSSRNG VVSKNRPCQDPFDTSKRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSENGIILG IGYNGFPRGCSDDKLPWAKMSKSGDPLETKYPYVCHAEVNAILNTNHASAVGQRLYVT MFPCNECAKIIIQSGVSEVIYFVEKRLNTDTTYVASHKLLSMAGVKVSLGPQLYSTWF FCIKMCQCVLRPVCHKEVPVIFPHGYVRKHQPQMDQILLKFKEP" mobile_element complement(23654801..23654901) /note="source:scaffold_1_CACTA_0030 653 755" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23655044..23655475 /note="source:CACAO_Mutator_E714_scaffold_3 428 849" /mobile_element_type="transposon:TIR/Mutator" gene 23659415..23660215 /locus_tag="TCM_014645" /note="dbxref CacaoGD:Thecc1EG014645" mRNA 23659415..23660215 /locus_tag="TCM_014645" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10860.1" /inference="similar to AA sequence:ricco:30147.m014503" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1637t1" CDS 23659423..23659935 /locus_tag="TCM_014645" /note="dbxref ricco:30147.m014503" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22486.1" /db_xref="TAIR:AT3G48550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BWN7" /translation="MEEEDQKELQLLPTSLSIASSSQMSSRASDSSLRYRSTTTSDQY EGPSLDLQLSISLRPIQQPSNCVIAGPICDFGDVKADTSCVESLKWQAAEQIRLAAIE KAYAERVRDLTKREMELAQSEFARARHMWQRAREEVEKAERMKERATRKIDSTCMEIT CQSCRQRFRP" gene 23664224..23668485 /locus_tag="TCM_014646" /note="dbxref CacaoGD:Thecc1EG014646" mRNA join(23664224..23664902,23665181..23665307, 23665398..23665728,23665798..23665949,23666096..23666188, 23666743..23666797,23666976..23667382,23667842..23668485) /locus_tag="TCM_014646" /product="Coiled-coil domain-containing protein 84, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G24900.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008547001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01408t00001" CDS join(23664562..23664902,23665181..23665307, 23665398..23665728,23665798..23665949,23666096..23666188, 23666743..23666797,23666976..23667382,23667842..23667862) /locus_tag="TCM_014646" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Coiled-coil domain-containing protein 84, putative isoform 1" /protein_id="EOY22487.1" /db_xref="Phytozome:GSVIVT01008547001" /db_xref="TAIR:AT4G24900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSV9" /translation="MEDRSEKPNPNPKSHFKNQNYDNTKGEKKQKKKSEFEFCKVCKL NHNQGPRHKYFPNHKNSLSAFLSRIQNKINDIRFFLKNPTIIRPEHAERNRFWCVFCD ADVDELDSSFACENAINHLVSAHHLKNLKHFLWQYGGKMDCLDMYRILETDLTKWQKK CKSLKSEAVAALGEGSCGVVYGTSYDIQNNVNFDKINNLEQNDINPLKSSYSNVVTPL QYHTNESQISNSRFSEVANFGSNLHDVNFSLPAAACSNISLWNSNDLTVRVSYIKNEN TLISFVFMFSVLELPANSISQHDLLYKNGICSANAYLSHIGYLALFLELNAEPCPSLF CHATFPQALEEVDHVCQVYQGGSMVNRESSSQGLLSLTEVASLSTVDAGGNVHSGAPP PWFEATDEAKPALSSFISSNKSQKSSKLNPKRVGAAWAEKRKMELEKEKRGEIVKSDC DANWLPNFGRVWQSGSRKESRKEFEIEKQKFLKVESHSEMPIKIQPYISKRMRRDFGE " mRNA join(<23664570..23664902,23665181..23665307, 23665398..23665728,23665873..23665949,23666761..23666797, 23666976..23667382,23667842..23668232) /locus_tag="TCM_014646" /product="Coiled-coil domain-containing protein 84, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT4G24900.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008547001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc12t3; inference alignment:Newbler:10:TSA:cgbaB_g01408t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5416t3" CDS join(<23664571..23664902,23665181..23665307, 23665398..23665728,23665873..23665949,23666761..23666797, 23666976..23667382,23667842..23667862) /locus_tag="TCM_014646" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Coiled-coil domain-containing protein 84, putative isoform 2" /protein_id="EOY22488.1" /db_xref="Phytozome:GSVIVT01008547001" /db_xref="TAIR:AT4G24900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSV9" /translation="RSEKPNPNPKSHFKNQNYDNTKGEKKQKKKSEFEFCKVCKLNHN QGPRHKYFPNHKNSLSAFLSRIQNKINDIRFFLKNPTIIRPEHAERNRFWCVFCDADV DELDSSFACENAINHLVSAHHLKNLKHFLWQYGGKMDCLDMYRILETDLTKWQKKCKS LKSEAVAALGEGSCGVVYGTSYDIQNNVNFDKINNLEQNDINPLKSSYSNVVTPLQYH TNESQISNSRFSEVANFGSNLHDVNFSLPAAACSNISLWNSNDLTANSISQHDLLYKN GICSANAYLSHIGGGSMVNRESSSQGLLSLTEVASLSTVDAGGNVHSGAPPPWFEATD EAKPALSSFISSNKSQKSSKLNPKRVGAAWAEKRKMELEKEKRGEIVKSDCDANWLPN FGRVWQSGSRKESRKEFEIEKQKFLKVESHSEMPIKIQPYISKRMRRDFGE" gene complement(23668151..23669865) /locus_tag="TCM_014647" /note="dbxref CacaoGD:Thecc1EG014647" mRNA complement(23668151..23669865) /locus_tag="TCM_014647" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10890.1" /inference="similar to AA sequence:frave:gene06314" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc8t8_C1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc8t6_C1" CDS complement(23668780..23669745) /locus_tag="TCM_014647" /note="dbxref frave:gene06314" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22489.1" /db_xref="TAIR:AT4G24910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFC2" /translation="MPPEVSHFRAPQITPSVQFSITAASGSSPKFGRAARRMKFSGKT LLPVLIFILSCLSILRLLKIAITTSHSTSPASALSSTLQQECSSPSECSEVTSNAPGV SRPHKSSANATLLTPKEFKLLSNLITRKAPCNLLVFGLQSQYLNLSSINAGGVTLFLE DDPYKISEIKADSNGTRIHKVKYQVPAKKAYSLLKHARGNPACAPSTSLLQQSTCKLA LRNLPKEVYQLKWDVVVVDGPIGDGPEAPGRMSTIYTASMLARVGRTTDVVVHDVNRT VEKWFSWEFLCEENLVSAKGKFWNFRIPGQSNSTRFCSPETVRIE" gene 23672690..23674961 /locus_tag="TCM_014648" /note="dbxref CacaoGD:Thecc1EG014648" mRNA join(23672690..23672866,23673309..23673399, 23673494..23673586,23673688..23674961) /locus_tag="TCM_014648" /product="Pyridoxal phosphate-dependent transferases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008549001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008813t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008549001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3549t1" CDS join(23673352..23673399,23673494..23673586, 23673688..23674629) /locus_tag="TCM_014648" /note="paralog of Thecc1EG008813t1" /codon_start=1 /product="Pyridoxal phosphate-dependent transferases superfamily protein" /protein_id="EOY22490.1" /db_xref="Phytozome:GSVIVT01008549001" /db_xref="TAIR:AT2G23520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZQ2" /translation="MGCSNKDQVVSHAGSKDMMESEHKESPFASIPKSPIQSSRPSSM VVKKAHTVIPAHIVAEAISTLHGLDLRWSGPITNTERVYVEQYVLAKYPQYAGQVEIE NMDLSSLCINEESSEPAPDDKRKSPKSNFRESSTPSFGSNLPDLDRIQLEASRLLDIL TKKSSFPGSFISIPEIQARNKVLRHCGLQDDDYLVLFTPNYKDAMMLVGESYPFFRGN FYMTIIGEEMDYIREFAIYKEAKAILAPESWLDLRIKGSQLSQYFRRKCKHSPKGLFS YPADVNGMRYSMHWISEAHRNSWHVLLDATALVVGQDRLNLALHRPDFVLCSLENTHA QPSRITCLLVRKKSFDTTTSSSQVTE" gene complement(23675528..23677580) /locus_tag="TCM_014649" /note="dbxref CacaoGD:Thecc1EG014649" mRNA complement(join(23675528..23675729,23675825..23675936, 23677220..23677335,23677446..23677580)) /locus_tag="TCM_014649" /product="SecE/sec61-gamma protein transport protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g026000.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017227t1" /inference="similar to AA sequence:frave:gene06313" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8838t1" CDS complement(join(23677220..23677335,23677446..23677539)) /locus_tag="TCM_014649" /note="dbxref frave:gene06313; paralog of Thecc1EG017227t1" /codon_start=1 /product="SecE/sec61-gamma protein transport protein" /protein_id="EOY22491.1" /db_xref="TAIR:AT5G50460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJU8" /translation="MDALDSVVDPLRDFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGF VVMGFVGFFVKLIFIPINNIIVGSA" mobile_element 23677542..23677598 /note="source:CACAO_M_E1400_F389_scaffold_1 1718 1776" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23678103..23679557 /locus_tag="TCM_014650" /note="dbxref CacaoGD:Thecc1EG014650" mRNA join(23678103..23678542,23678626..23678726, 23678806..23678996,23679069..23679557) /locus_tag="TCM_014650" /product="Xyloglucan endotransglucosylase/hydrolase 2, putative" /inference="alignment:exonerate-protein:2:frave:gene17598" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002900t1" /inference="similar to AA sequence:Phytozome:GSVIVT01003280001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5420t3" CDS join(23678368..23678542,23678626..23678726, 23678806..23678996,23679069..23679453) /locus_tag="TCM_014650" /note="paralog of Thecc1EG002900t1" /codon_start=1 /product="Xyloglucan endotransglucosylase/hydrolase 2, putative" /protein_id="EOY22492.1" /db_xref="Phytozome:GSVIVT01003280001" /db_xref="TAIR:AT4G13090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SV60" /translation="MESWILGLFVFLFLASAKTSKARNSASFYSNYYVTWGFDHALII NNETEIQLTLDQTSGSGFETKWRYGSGFFHIRMKIPDKNSTGVLTAFYLTSRSSDHDE LDFELLGNDTAPYTLQTNVFANGQGGREQRIHFWFDPTKDFHSYKILWNHYQIVFYVD NVPIRVFKNNRKVGVNYPNQPMQIEGSVWNAEGWASGGKRTDWNQAPFKAYLQEFNAD GCVLHDYAVEKCYSSHFWWNREEFWKLKPRDQKANDHVRTKYMYYDYCSDKTRYSKPP PECKSNQ" gene complement(23679766..23682920) /locus_tag="TCM_014651" /note="dbxref CacaoGD:Thecc1EG014651" mRNA complement(join(23679766..23680020,23682021..23682920)) /locus_tag="TCM_014651" /product="Nuclear transcription factor Y subunit C-1" /inference="alignment:exonerate- protein:2:ricco:30147.m014493" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033437t5" /inference="similar to AA sequence:Phytozome:POPTR_0015s10940.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8839t1" CDS complement(join(23680017..23680020,23682021..23682730)) /locus_tag="TCM_014651" /note="paralog of Thecc1EG033437t5" /codon_start=1 /product="Nuclear transcription factor Y subunit C-1" /protein_id="EOY22493.1" /db_xref="Phytozome:POPTR_0015s10940.1" /db_xref="TAIR:AT3G48590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FMV5" /translation="MDSNQQAQSSYPPQPPTAAITPTPSTTTSATPPPPFHHLLQQQQ QQLQMFWSYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELF ILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVG ATASGVPYYYPPIGQPAGGPAGPGGMIIGRPAVDPTSGVYVQPPSQAWQSVWQTAGAE DGSYGSGGSSGQGNLDGQG" gene complement(23684259..23688593) /locus_tag="TCM_014652" /note="dbxref CacaoGD:Thecc1EG014652" mRNA complement(join(23684259..23687492,23688500..23688593)) /locus_tag="TCM_014652" /product="DNAJ heat shock N-terminal domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008764t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s10950.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2902t1" CDS complement(23685102..23687426) /locus_tag="TCM_014652" /note="paralog of Thecc1EG008764t2" /codon_start=1 /product="DNAJ heat shock N-terminal domain-containing protein, putative" /protein_id="EOY22494.1" /db_xref="Phytozome:POPTR_0015s10950.1" /db_xref="TAIR:AT5G53150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFC8" /translation="MDSNKDEAIRAKELAEEKLREMDAAGAKRFALKAQNMYPELDGL PQLLATIDVYISADMKISGEVDCYSVLGVQPSADEDTIRKHFRKLALILHPDKNKSVG ADGAFHILSEAWNLLSDKAKRIAYDQKRNLWCSHTSVLCGKSSSLAPTSHEGFHNFNN TSDQNNATYSRPAPPHSARNDTFWTTCNTCRMNFEYHRVYVNLNLTCPNCSTPFRAVM KPAAPVNGSWPYTPSTDCVQRQTYPQVHNTGPGIFSGLHSFTNISLNRSGSNINVAPP AYFTAQVANFTLSASETLKSGHKGSQSQTVTMGEGSLPMKFHPSQKLDEGLGTGSLDY ISSFAAKSHRSKNRRPFDQSEMGNQPMGKELSKQDIHNMLTKIAKKEICKKLNSWHPA SLSNASNKPKAFHKGMDEKDEGNGKDALNMKSDAQKSMEFVDIKSSIQPKKSYPVDAD VEPATKEPDPMSMNVPDPDFHDFDKDRAERSFGQKQVWAAYDDDDGMPRLYAMIHDVI SLKPFKMRMSWLNSKRNVELAPLNWIGSGFYKTSGDFRIGKHKVNRTLNSFSHKVKWS KGRKGAIQIYPRKGDVWALYRNWSSDWNELTPNEVIHKYDMVEVLEDYNEQNGVAVAP LVKVPGFKTVFQKHSMPSKTWMIPREELFRFSHQVPSYLLTGQEGHNAPNGCLELDPA ATPLELLQVLSEAQVIEMEELTERGREETVLGDLKRSKEKELVENDQEMKPNIGVEGV GQAVMEEEENKKPGMLVYGRRQQRKLECQRNLGD" gene complement(23690927..23695205) /locus_tag="TCM_014653" /note="dbxref CacaoGD:Thecc1EG014653" mRNA complement(join(23690927..23692084,23692194..23693125, 23694546..23695205)) /locus_tag="TCM_014653" /product="Major facilitator protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008567001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017232t2" /inference="similar to AA sequence:ricco:30147.m014491" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5428t1" CDS complement(join(23691586..23692084,23692194..23693125, 23694546..23694881)) /locus_tag="TCM_014653" /note="dbxref ricco:30147.m014491; paralog of Thecc1EG017232t2" /codon_start=1 /product="Major facilitator protein" /protein_id="EOY22495.1" /db_xref="TAIR:AT5G14120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FMT8" /translation="MEQIREKLKAFVNNRWLVFVCAMWVQSCAGVGYLFGSISPVIKS AMGYNQRQIAILGVAKDLGDSIGFVAGSCCEILPMWVILLIGVVQNFVGYGLVWLVIA NILPDLPLWVLCVAIFVGTNGETYYNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAI LTQVYTMINFPNEAALIFMVAVGPSIVVIALMFIVRPVGGHKQVRPSDGSSFLFTYSV CLILAAYLLGVLVLEDIVGINQTLVTLLGVLLIILILLPVIIPILLVFASEPSPPVEE NLLPKPEKQESGRFEQNENEVILSEVEDEKPPEVDSLPLLERQKRIAHLQAKLFQAAA EGAVRVKRKRGPRRGEDFTLLQALIKADFWLMFFSLVLAAGSGLTVIDNLGQICQSLG YSDTSIFVSMVSIFNFLGRVGGGYFSETIIRKYAFPRPVAMAVVQVIMAFGLLYYALG WPGQIYVTTVLTGLGYGAHWAIVPASASELFGLKSFGALYNFLALASPAGSLIFSGAI ASGIYDYYAEKQASLRQPVSGSLLTIPLRDDDSLTCEGSICYSLTCALMSGVCMAAMV LSLIVVYRTRSVYAQLYGKSCN" mobile_element 23695314..23695372 /note="source:CACAO_M_S_E90022_F9_scaffold_8 3090 3153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23696107..23696535 /note="source:CACAO_PIF_E119_scaffold_3 1348 1762" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23696257..23696729) /note="source:CACAO_M_E35271_F316_scaffold_5 23 495" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23696718..23697039) /note="source:CACAO_PIF_E119_scaffold_3 2271 2609" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23696845..23696956) /note="source:INTACT459_F220_scaffold_4-int 8207 8698" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23696957..23697722 /note="source:scaffold_4_CACTA_0493 2054 2831" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23697723..23697907) /note="source:INTACT459_F220_scaffold_4-int 7379 8206" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23698037..23698731) /note="source:INTACT459_F220_scaffold_4-int 6895 7540" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23698727..23700016) /note="source:CACAO_M_S_E119572_F76_scaffold_9 2306 3603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23702317..23702617) /note="source:CACAO_M_S_E6161_F17_scaffold_2 1249 1542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23702737..23704038) /note="source:CACAO_M_E43890_F17_scaffold_5 1 1309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23704185..23706255) /note="source:CACAO_M_S_E119572_F76_scaffold_9 251 2311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23706361..23706561 /note="source:CACAO_M_E14081_F316_scaffold_3 15278 15462" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23706803..23707509 /note="source:CACAO_on_E445_scaffold_2 1 702" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23707510..23707597) /note="source:scaffold_2_CACTA_0243 6450 7242" /mobile_element_type="transposon:TIR/CACTA" gene complement(23708753..23710260) /locus_tag="TCM_014654" /note="dbxref CacaoGD:Thecc1EG014654" mRNA complement(join(23708753..23709234,23709494..23709563, 23709656..23709770,23709899..23710260)) /locus_tag="TCM_014654" /product="Thylakoid lumenal 17.9 kDa protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014490" /inference="similar to AA sequence:Phytozome:POPTR_0015s10960.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc789t3" CDS complement(join(23709014..23709234,23709494..23709563, 23709656..23709770,23709899..23710176)) /locus_tag="TCM_014654" /codon_start=1 /product="Thylakoid lumenal 17.9 kDa protein" /protein_id="EOY22496.1" /db_xref="Phytozome:POPTR_0015s10960.1" /db_xref="TAIR:AT4G24930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SW33" /translation="MTITLIRQLLPLLSSPSKQPTPSATFSQLQISKNPSPKPILFSN LLSLALTLTLNSPLPSLAFPSVNSLSSPKLPPTTPFTEAKFLQLGLEDGKIRPCPSTN PGCVSTNAKSSSFAFPWIIPENSTENAVQELQEAILKTQKNAKIEVVEDTPSGKYLLA EVDGAFGRDVLEFLVKGDVVTYRSMAEKVTYIYPFTTAIGDSKGQEERLKKIIDQLGW YVPSFDSME" mobile_element complement(23710476..23711182) /note="source:INTACT687_F13_scaffold_3-int 1296 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23711388..23713041 /locus_tag="TCM_014655" /note="dbxref CacaoGD:Thecc1EG014655" mRNA join(23711388..23711940,23712281..23712373, 23712712..23713041) /locus_tag="TCM_014655" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10100.1" /inference="similar to AA sequence:ricco:30147.m014489" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11976t00001; inference alignment:Newbler:10:TSA:cgbaB_g11976t00001" mRNA join(23711431..23711940,23712712..>23712732) /locus_tag="TCM_014655" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10100.1" /inference="similar to AA sequence:frave:gene08613" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc257t6; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc257t8_C1; inference alignment:Newbler:10:TSA:cgbaB_g11976t00001" mRNA join(23711431..23711879,23712281..23712372) /locus_tag="TCM_014655" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10100.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc257t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc257t8_C1; inference alignment:Newbler:10:TSA:cgbaB_g11976t00001" CDS join(23711536..23711940,23712281..23712373, 23712712..23712810) /locus_tag="TCM_014655" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014489" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22497.1" /db_xref="TAIR:AT5G63480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FMV4" /translation="MEENPLNATTPTSSNTKTTQELAAEGLKHLEETIEAAFQILSSM NDELCNPALWSTIPSSSNSTTASSTTTANTAAPNGPSSLSNGDSASDGGHHLEMGGIG GSGNGALDEARLRYKNSVASLRAVLAAIPNSQKAKAFETGSTASSPADEAEIDKLEDQ ASNLRKELANKNEYLKLLIDQLRDLITDISTWQSPCSI" CDS join(23711536..23711940,23712712..>23712732) /locus_tag="TCM_014655" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene08613" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY22498.1" /db_xref="TAIR:AT5G63480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FMV4" /translation="MEENPLNATTPTSSNTKTTQELAAEGLKHLEETIEAAFQILSSM NDELCNPALWSTIPSSSNSTTASSTTTANTAAPNGPSSLSNGDSASDGGHHLEMGGIG GSGNGALDEARLRYKNSVASLRAVLAAIPNSQKELANKNE" CDS join(23711536..23711879,23712281..23712368) /locus_tag="TCM_014655" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY22499.1" /translation="MEENPLNATTPTSSNTKTTQELAAEGLKHLEETIEAAFQILSSM NDELCNPALWSTIPSSSNSTTASSTTTANTAAPNGPSSLSNGDSASDGGHHLEMGGIG GSGNGALDEARLRQRHLKRVQLQAVLQMKQKLTSWKTKPLI" gene complement(23713989..23717330) /locus_tag="TCM_014656" /note="dbxref CacaoGD:Thecc1EG014656" mRNA complement(join(23713989..23714901,23715268..23715444, 23716021..23717330)) /locus_tag="TCM_014656" /product="Non-specific phospholipase C6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040916t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10110.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05045t00001" CDS complement(join(23714603..23714901,23715268..23715444, 23716021..23717110)) /locus_tag="TCM_014656" /note="paralog of Thecc1EG040916t1" /codon_start=1 /product="Non-specific phospholipase C6" /protein_id="EOY22500.1" /db_xref="Phytozome:POPTR_0012s10110.1" /db_xref="TAIR:AT3G48610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWU7" /translation="MGGSQTKAPTSFSFIFLLFLTVSCLFTPLGAQQQSPIKTIVVLV MENRSFDHMVGWMKKSINPAVNGVTGDECNPVSTKNPNPESICFTDDAEFVDPDPGHS FEAVEQQVFGSASIPSMSGFVEQALSMSQNLSETVMKGFRPQAVPVYAALVKEFALFD RWFSSIPGPTQPNRLFVYSATSHGSTSHVKKQLAHGYPQKTIFESLYENGKDFGIYFQ NIPTTLFYRNLRKLKYVFKFHQFDLKFKKDARKGKLPSLTVIEPRYFDLKGLPANDDH PSHDVANGQKLVKEVYETLRASPQWNETLLVITYDEHGGFYDHVKTPYVNVPNPDGNT GPAPSFFKFDRLGVRVPTIMVSPWIKKGTVISGPKGPTPNSEFEHSSIPATIKKMFNL SSNFLTHRDAWAGTFEEVVAGLTSPRTDCPVTLPDVAPLRTTEAKEDAGLSEFQSEVV QLAAVLNGDHFLSSFPDEMGKKMSVKEAHEYVKGAVSRFIRASKEAIKLGADESAIVD MRSSLTTRSSIHN" gene complement(23719988..23726333) /locus_tag="TCM_014657" /note="dbxref CacaoGD:Thecc1EG014657" mRNA complement(join(23719988..23720754,23721190..23721279, 23721376..23721461,23722226..23722359,23722444..23722553, 23722779..23722837,23722923..23723028,23723184..23723250, 23723403..23723516,23723707..23723785,23723941..23724111, 23724200..23724332,23724464..23724632,23725735..23725871, 23725954..23726333)) /locus_tag="TCM_014657" /product="CBS / octicosapeptide/Phox/Bemp1 domains-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014487" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001612t1" /inference="similar to AA sequence:ricco:30147.m014487" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04584t00001" mRNA complement(join(23720161..23720754,23721190..23721279, 23721376..23721461,23721885..23721956,23722297..23722359, 23722444..23722553,23722779..23722837,23722923..23723028, 23723184..23723250,23723403..23723516,23723707..23723785, 23723941..23724111,23724200..23724332,23724464..23724632, 23725735..23725871,23725954..23726299)) /locus_tag="TCM_014657" /product="CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m014487" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001612t1" /inference="similar to AA sequence:ricco:30147.m014487" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1422t4; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1422t7; inference alignment:Newbler:10:TSA:cgbaP2_g04584t00001" mRNA complement(join(23720161..23720754,23721190..23721279, 23721376..23721461,23721885..23721956,23722297..23722359, 23722444..23722553,23722770..23722837,23722923..23723028, 23723184..23723250,23723403..23723516,23723707..23723785, 23723941..23724111,23724200..23724332,23724464..23724632, 23725735..23725871,23725954..23726299)) /locus_tag="TCM_014657" /product="CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014487" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001612t1" /inference="similar to AA sequence:ricco:30147.m014487" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1422t7; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1422t7; inference alignment:Newbler:10:TSA:cgbaP2_g04584t00001" mRNA complement(join(23720231..23720754,23721190..23721279, 23721376..23721461,23722226..23722359,23722444..23722553, 23722770..23722837,23722923..23723028,23723184..23723250, 23723403..23723516,23723707..23723785,23723941..23724111, 23724200..23724332,23724464..23724632,23725735..23725871, 23725954..23726299)) /locus_tag="TCM_014657" /product="CBS / octicosapeptide/Phox/Bemp1 domains-containing protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014487" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001612t1" /inference="similar to AA sequence:ricco:30147.m014487" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5478t5; inference alignment:Newbler:10:TSA:cgbaP2_g04584t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1422t7" CDS complement(join(23720575..23720754,23721190..23721279, 23721376..23721461,23722226..23722359,23722444..23722553, 23722779..23722837,23722923..23723028,23723184..23723250, 23723403..23723516,23723707..23723785,23723941..23724111, 23724200..23724332,23724464..23724632,23725735..23725862)) /locus_tag="TCM_014657" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014487; paralog of Thecc1EG001612t1" /codon_start=1 /product="CBS / octicosapeptide/Phox/Bemp1 domains-containing protein isoform 1" /protein_id="EOY22501.1" /db_xref="TAIR:AT5G50530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LUF7" /translation="MASQGGSSRRSLSVVNSASGRKKTSENVGSDSGRKLLPSSRPMG LAGERTVKRLRLSKALTVPESTSIYEACRRMAARRVDALLLTDSNALLCGILTDKDIA TRVIARELNLEETPVSKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIAL LDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGASFAGQNTFIEALRERMFRPSL STIISDNSKIVTVSPTDSVLATAKKMLESRLSSAVVTVENKPRGILTSKDILMRVISQ NLPPESTLVEKVMTPNPECATVDTPIVDALHTMHDGKFLHLPVVDRDGEIVAVVDVLH ITHAAVATVGSTSGINNEATTTMMQKFWDSAMALPPNEDDDETRSDNSLKLASDGGET ARSLPYPSSSMPNTFGFKIQDKKGRMHRFTCDTRSMTDLITAILQRLEDDIDRDSVPQ ILYEDEDHDKVVLSSDNDLSAAVQHAKLVGWKGLRLHLDYSGKQGRRRGSSSGSLDYA HSDAWAAAYSAVAAGAAVAAGLGLLAYLRKAGN" CDS complement(join(23720575..23720754,23721190..23721279, 23721376..23721461,23722226..23722359,23722444..23722553, 23722770..23722837,23722923..23723028,23723184..23723250, 23723403..23723516,23723707..23723785,23723941..23724111, 23724200..23724332,23724464..23724632,23725735..23725862)) /locus_tag="TCM_014657" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014487; paralog of Thecc1EG001612t1" /codon_start=1 /product="CBS / octicosapeptide/Phox/Bemp1 domains-containing protein isoform 2" /protein_id="EOY22502.1" /db_xref="TAIR:AT5G50530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LUF7" /translation="MASQGGSSRRSLSVVNSASGRKKTSENVGSDSGRKLLPSSRPMG LAGERTVKRLRLSKALTVPESTSIYEACRRMAARRVDALLLTDSNALLCGILTDKDIA TRVIARELNLEETPVSKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIAL LDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGASFAGQNTFIEALRERMFRPSL STIISDNSKIVTVSPTDSVLATAKKMLESRLSSAVVTVENKPRGILTSKDILMRVISQ NLPPESTLVEKVMTPNPECATVDTPIVDALHTMHDGKFLHLPVVDRDGEIVAVVDVLH ITHAAVATVSQVGSTSGINNEATTTMMQKFWDSAMALPPNEDDDETRSDNSLKLASDG GETARSLPYPSSSMPNTFGFKIQDKKGRMHRFTCDTRSMTDLITAILQRLEDDIDRDS VPQILYEDEDHDKVVLSSDNDLSAAVQHAKLVGWKGLRLHLDYSGKQGRRRGSSSGSL DYAHSDAWAAAYSAVAAGAAVAAGLGLLAYLRKAGN" CDS complement(join(23721461,23721885..23721956, 23722297..23722359,23722444..23722553,23722779..23722837, 23722923..23723028,23723184..23723250,23723403..23723516, 23723707..23723785,23723941..23724111,23724200..23724332, 23724464..23724632,23725735..23725862)) /locus_tag="TCM_014657" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m014487; paralog of Thecc1EG001612t1" /codon_start=1 /product="CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein isoform 4" /protein_id="EOY22504.1" /db_xref="TAIR:AT5G50530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFD3" /translation="MASQGGSSRRSLSVVNSASGRKKTSENVGSDSGRKLLPSSRPMG LAGERTVKRLRLSKALTVPESTSIYEACRRMAARRVDALLLTDSNALLCGILTDKDIA TRVIARELNLEETPVSKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIAL LDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGASFAGQNTFIEALRERMFRPSL STIISDNSKIVTVSPTDSVLATAKKMLESRLSSAVVTVENKPRGILTSKDILMRVISQ NLPPESTLVEKVMTPNPECATVDTPIVDALHTMHDGKFLHLPVVDRDGEIVAVVDVLH ITHAAVATVGSTSGINNEATTTMMQKFWDSAMALPPNEDDDETRSDNSLKLASDGGET ARSLPYPSSSMPNTFGFKIQDKRGRMHRFTL" CDS complement(join(23721461,23721885..23721956, 23722297..23722359,23722444..23722553,23722770..23722837, 23722923..23723028,23723184..23723250,23723403..23723516, 23723707..23723785,23723941..23724111,23724200..23724332, 23724464..23724632,23725735..23725862)) /locus_tag="TCM_014657" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014487; paralog of Thecc1EG001612t1" /codon_start=1 /product="CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein isoform 3" /protein_id="EOY22503.1" /db_xref="TAIR:AT5G50530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFD3" /translation="MASQGGSSRRSLSVVNSASGRKKTSENVGSDSGRKLLPSSRPMG LAGERTVKRLRLSKALTVPESTSIYEACRRMAARRVDALLLTDSNALLCGILTDKDIA TRVIARELNLEETPVSKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIAL LDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGASFAGQNTFIEALRERMFRPSL STIISDNSKIVTVSPTDSVLATAKKMLESRLSSAVVTVENKPRGILTSKDILMRVISQ NLPPESTLVEKVMTPNPECATVDTPIVDALHTMHDGKFLHLPVVDRDGEIVAVVDVLH ITHAAVATVSQVGSTSGINNEATTTMMQKFWDSAMALPPNEDDDETRSDNSLKLASDG GETARSLPYPSSSMPNTFGFKIQDKRGRMHRFTL" mobile_element complement(23723608..23723628) /note="source:CACAO_M_E49559_F88_scaffold_7 7649 7717" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23723629..23723690 /note="source:CACAO_PIF_E119_scaffold_3 2595 2657" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23730907..23731367 /note="source:scaffold_7_CACTA_0795 2863 3284" /mobile_element_type="transposon:TIR/CACTA" gene 23732459..23733192 /locus_tag="TCM_014659" /note="dbxref CacaoGD:Thecc1EG014659" mRNA 23732459..23733192 /locus_tag="TCM_014659" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g020650.1" /inference="alignment:exonerate- protein:2:ricco:30147.m014486" /inference="similar to AA sequence:Phytozome:POPTR_0015s11010.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5444t1" CDS 23732588..23732797 /locus_tag="TCM_014659" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22505.1" /db_xref="Phytozome:POPTR_0015s11010.1" /db_xref="TAIR:AT3G27030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JEW3" /translation="MVDWAPIVIGLLLFILLSPGLLFQLPGNTRTVEFGNFKTNGKAI VIHTILFFGLFTILILAVGIRIYTG" gene 23735290..23736150 /locus_tag="TCM_014660" /note="dbxref CacaoGD:Thecc1EG014660" mRNA 23735290..23736150 /locus_tag="TCM_014660" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014485" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008722t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s16890.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc616t1" CDS 23735322..23735843 /locus_tag="TCM_014660" /note="paralog of Thecc1EG008722t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22506.1" /db_xref="Phytozome:POPTR_0003s16890.1" /db_xref="TAIR:AT5G63500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5XGC4" /translation="MKRSEIRKDPTQDNRSRWNHNTSSGESSHVRSLVSRHPRSIQCE RNPSRFVCILCPISFTLPSLFSSFLFPKPFSHSRCTLLFLLFFIFILSGKNQKPQGRG QMADWGPVLVATVLFVLLSPGLLFQIPGRNKVVEFGNMQTSGASILVHAIIYFGLITI FCIAIGVHIYASQ" mobile_element 23737137..23737750 /note="source:CACAO_M_S_E122136_F76_scaffold_10 8 665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23737834..23739958) /note="source:CACAO_M_S_E99001_F76_scaffold_9 2294 4483" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23739953..23741419 /note="source:CACAO_M_S_E51603_F76_scaffold_4 3693 5161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23741399..23741462 /note="source:CACAO_M_S_E90022_F9_scaffold_8 3093 3156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23741406..23741564 /note="source:CACAO_M_E49559_F88_scaffold_7 7628 7802" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23741437..23741602) /note="source:CACAO_M_S_E90022_F9_scaffold_8 2990 3156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23741703..23741804) /note="source:CACAO_M_S_E5860_F197_scaffold_2 11492 11592" /mobile_element_type="retrotransposon:LTR/Copia" gene 23744662..23748820 /locus_tag="TCM_014661" /note="dbxref CacaoGD:Thecc1EG014661" mRNA join(23744662..23744883,23745060..23745138, 23746072..23746133,23746225..23746348,23746520..23746561, 23746853..23746906,23747015..23747056,23747143..23747216, 23748331..23748820) /locus_tag="TCM_014661" /product="K-box region and MADS-box transcription factor family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008560001" /inference="similar to AA sequence:Phytozome:GSVIVT01008560001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4184t2_C2" mRNA join(23744687..23744883,23745060..23745138, 23746072..23746133,23746225..23746324,23746520..23746561, 23747015..23747056,23747143..23747216,23747623..23747963) /locus_tag="TCM_014661" /product="K-box region and MADS-box transcription factor family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008560001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001841t2" /inference="similar to AA sequence:Phytozome:GSVIVT01008560001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3690t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4184t2_C2" CDS join(23744702..23744883,23745060..23745138, 23746072..23746133,23746225..23746348,23746520..23746561, 23746853..23746906,23747015..23747056,23747143..23747216, 23748331..23748499) /locus_tag="TCM_014661" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="K-box region and MADS-box transcription factor family protein isoform 1" /protein_id="EOY22507.1" /db_xref="Phytozome:GSVIVT01008560001" /db_xref="TAIR:AT3G57230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SH01" /translation="MGRGKVEMKRIENPTSRQVTFSKRRNGLLKKAFELSILCDAEVA LLIFSSTGKAYQFASHDMDRSIGKYRSEVGLPDSSNPQFRTMEFWRSEIEELKRSINT LEARLKHLSGEDLLSLGMRDLKQLERQLKIGVERVRSRKVQTLIHSHRRIVSDHATLL KRREDMVRQRHTPCRRPVEILHKELHEDNTRLQKRLKELHDGNLSSTIVGENVCSMFQ QREKLLHITASNRKEGYVSTIGISNQNRLRKTSKQVKELTLDQSPLSRLKRFRTPDI" CDS join(23744702..23744883,23745060..23745138, 23746072..23746133,23746225..23746324,23746520..23746561, 23747015..23747056,23747143..23747216,23747623..23747674) /locus_tag="TCM_014661" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG001841t2" /codon_start=1 /product="K-box region and MADS-box transcription factor family protein isoform 2" /protein_id="EOY22508.1" /db_xref="Phytozome:GSVIVT01008560001" /db_xref="TAIR:AT2G42830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SH01" /translation="MGRGKVEMKRIENPTSRQVTFSKRRNGLLKKAFELSILCDAEVA LLIFSSTGKAYQFASHDMDRSIGKYRSEVGLPDSSNPQFRTMEFWRSEIEELKRSINT LEARLKHLSGEDLLSLGMRDLKQLERQLKIGVERVRSRKRRIVSDHATLLKRRHKELH EDNTRLQKRLKELHDGNLSSTIVGENVCSMFQQRILQDENLLKEAEKVSH" gene 23750213..23753786 /locus_tag="TCM_014662" /note="dbxref CacaoGD:Thecc1EG014662" mRNA join(23750213..23750862,23752977..23753321, 23753384..23753786) /locus_tag="TCM_014662" /product="Gamma carbonic anhydrase like 1, CAL1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014482" /inference="similar to AA sequence:ricco:30147.m014482" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc334t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc334t3" CDS join(23750235..23750862,23752977..23753321, 23753384..23753511) /locus_tag="TCM_014662" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014482" /codon_start=1 /product="Gamma carbonic anhydrase like 1, CAL1 isoform 1" /protein_id="EOY22509.1" /db_xref="TAIR:AT5G63510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SMN1" /translation="MADKTEQHEKSRALLKCCTNLLLMGRVLFYNCFGLIASFWAQLI THQNHLIGVRLFSFSPFSSLSSIFASVEALNPFLSPPLPPTMASSIAARISRKAAASA FSAHCHTIASRNFAAEAAKAISPSADRVKWDYRGQRKIIPLGQWVPKVAVDAYVAPNV VLAGQVTVSDGASVWNGCVLRGDLNKITVGFCSNVQERCVIHAAWSSPTGLPAETSIE RFVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVVPPGRRIPTGELW AGNPARFVRALTHEETLEIPKLAVAINDLSKEHFSEFLPYSTIYLEVETVYWSFPCKE ISGQRTYRKEVLSVVYPCILIMLAVEKTCSCE" mRNA join(<23750273..23750862,23752986..23753321, 23753384..>23753481) /locus_tag="TCM_014662" /product="Gamma carbonic anhydrase like 1, CAL1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014482" /inference="similar to AA sequence:ricco:30147.m014482" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is weak, protein is partial; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc26t10; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc334t3" CDS join(<23750274..23750862,23752986..23753321, 23753384..>23753481) /locus_tag="TCM_014662" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014482" /codon_start=1 /product="Gamma carbonic anhydrase like 1, CAL1 isoform 2" /protein_id="EOY22510.1" /db_xref="TAIR:AT5G63510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SMN1" /translation="LLKCCTNLLLMGRVLFYNCFGLIASFWAQLITHQNHLIGVRLFS FSPFSSLSSIFASVEALNPFLSPPLPPTMASSIAARISRKAAASAFSAHCHTIASRNF AAEAAKAISPSADRVKWDYRGQRKIIPLGQWVPKVAVDAYVAPNVVLAGQVTVSDGAS VWNGCVLRGDLNKITVGFCSNVQERCVIHAAWSSPTAETSIERFVTIGAYSLLRSCTI EPECIIGQHSILMEGSLVETHSILEAGSVVPPGRRIPTGELWAGNPARFVRALTHEET LEIPKLAVAINDLSKEHFSEFLPYSTIYLEVETVYWSFPCKEISGQRTYRKEVLSVVY PCILIML" gene complement(23757794..23763332) /locus_tag="TCM_014665" /note="dbxref CacaoGD:Thecc1EG014665" mRNA complement(join(23757794..23758297,23758419..23758591, 23759683..23759801,23760084..23760265,23761262..23761417, 23761992..23762031,23762126..23762227,23762387..23762506, 23762598..23762690,23762783..23762890,23762998..23763231)) /locus_tag="TCM_014665" /product="F-box family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008557001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014667t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11080.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01186t00002; inference alignment:Newbler:10:TSA:cgbaB_g01186t00002" mRNA complement(join(23757797..23758591,23759683..23759801, 23759894..23759938,23760084..23760265,23761262..23761417, 23761992..23762031,23762126..23762278,23762387..23762506, 23762598..23762690,23762783..23762890,23762998..23763277)) /locus_tag="TCM_014665" /product="F-box family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008557001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014667t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01186t00002" CDS complement(join(23758111..23758591,23759683..23759801, 23759894..23759938,23760084..23760265,23761262..23761417, 23761992..23762031,23762126..23762278,23762387..23762506, 23762598..23762690,23762783..23762890,23762998..23763225)) /locus_tag="TCM_014665" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014667t1" /codon_start=1 /product="F-box family protein, putative isoform 1" /protein_id="EOY22511.1" /db_xref="Phytozome:POPTR_0015s11080.1" /db_xref="TAIR:AT5G63520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFD9" /translation="MENKKRSSASPSTTNKKESKGFCLMNHDLLQNILSRLPAASFAS AACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQEVFGKVMSEPIRPHFAMASVGP GFHFKDVLQFMVEKLGSRTPIILSSVSGIFGRDALTHEFREVKWTNGNVDDEVSTYTG IVLNVGYVPGLKVEAIPLLQQKKFGFSKRKLTWRTLLICQTPQGSMIDKFVMDIKSYT SSMSGCTSPLAIIMIGDADVDQKPIIEKLDYAMSMETIIVGDERGQFVYKSGDVSRNV SSSLKCSPDAVALVFARDRDKAHGVGDIEFHFALSNGVTAIGPRFKAASVKVRNSESV TWLTAKREGQQEVLDGQHILDHINNEPSPFRTEVLIHYTDIMENHTEYVDLYIGVTRL RNCSVGSDKPRLMTSLALHGVVGGDEEYLYVDGVGIRTGDYFQFYLSDPKTALPSCRN VSSTLRNLKLEWDTKSAHSTSAGINATDKKEIFGGFIFSCCGRGDSFFRHLNVDRSPF LNVDSSPFLENFPGVPLAGIFCGGEIGRGYTSLTAHGGQEEGSVRCHLHVYSTVYLVM SYTTPEVH" CDS complement(join(23758212..23758297,23758419..23758591, 23759683..23759801,23760084..23760265,23761262..23761417, 23761992..23762031,23762126..23762227,23762387..23762506, 23762598..23762690,23762783..23762890,23762998..23763225)) /locus_tag="TCM_014665" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014667t1" /codon_start=1 /product="F-box family protein, putative isoform 2" /protein_id="EOY22512.1" /db_xref="Phytozome:POPTR_0015s11080.1" /db_xref="TAIR:AT5G63520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFD9" /translation="MENKKRSSASPSTTNKKESKGFCLMNHDLLQNILSRLPAASFAS AACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQEVFGKVMSEPIRPHFAMASVGP GFHFKDVLQFMVEKLGSRTPIILSSVSGIFGRDALTHEFREVKWTNGNVDDEVSTYTG IVLNVGYVPGLKVEAIPLLQQKKTPQGSMIDKFVMDIKSYTSSMSGCTSPLAIIMIGD ADVDQKPIIEKLDYAMSMETIIVGDERGQFVYKSGDVSRNVSSSLKCSPDAVALVFAR DRDKAHGVGDIEFHFALSNGVTAIGPRFKAASVKVRNSESVTWLTAKREGQQEVLDGQ HILDHINNEMENHTEYVDLYIGVTRLRNCSVGSDKPRLMTSLALHGVVGGDEEYLYVD GVGIRTGDYFQFYLSDPKTALPSCRNVSSTLRNLKLEWDTKSAHSTSAAPPSWRTFLG FPWQEYFAVGKSDVAIQA" mRNA complement(join(23758269..23758297,23758419..23758517, 23759683..23759801,23760084..23760265,23761262..23761417, 23761992..23762031,23762126..23762227,23762387..23762506, 23762598..23762690,23762783..23762890,23762998..23763332)) /locus_tag="TCM_014665" /product="F-box family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008557001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014667t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11080.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc838t3; inference alignment:Newbler:10:TSA:cgbaB_g01186t00002" mRNA complement(join(23758383..23758517,23759683..23759801, 23760084..23760265,23761262..23761417,23761992..23762031, 23762126..23762227,23762387..23762506,23762598..23762690, 23762783..23762890,23762998..23763332)) /locus_tag="TCM_014665" /product="F-box family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008557001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014667t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11080.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc621t2; alternateUTRof:Thecc1EG014665t3; inference alignment:Newbler:10:TSA:cgbaB_g01186t00002" mRNA complement(join(<23758383..23758591,23759683..23759801, 23760084..23760265,23761262..23761417,23761992..23762031, 23762126..23762227,23762387..23762506,23762598..23762690, 23762783..23762890,23762998..>23763332)) /locus_tag="TCM_014665" /product="F-box family protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008557001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014667t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11080.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc621t10; inference alignment:Newbler:10:TSA:cgbaB_g01186t00002" CDS complement(join(<23758384..23758591,23759683..23759801, 23760084..23760265,23761262..23761417,23761992..23762031, 23762126..23762227,23762387..23762506,23762598..23762690, 23762783..23762890,23762998..>23763330)) /locus_tag="TCM_014665" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG014667t1" /codon_start=1 /product="F-box family protein, putative isoform 4" /protein_id="EOY22514.1" /db_xref="Phytozome:POPTR_0015s11080.1" /db_xref="TAIR:AT5G63520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFD9" /translation="TNFQVPTYIGRNGVKPKAGETFGYFFRVSLHLTPSMENKKRSSA SPSTTNKKESKGFCLMNHDLLQNILSRLPAASFASAACVSKAWNAACNRVLSRPKLSS AISLNPSPRVALQEVFGKVMSEPIRPHFAMASVGPGFHFKDVLQFMVEKLGSRTPIIL SSVSGIFGRDALTHEFREVKWTNGNVDDEVSTYTGIVLNVGYVPGLKVEAIPLLQQKK TPQGSMIDKFVMDIKSYTSSMSGCTSPLAIIMIGDADVDQKPIIEKLDYAMSMETIIV GDERGQFVYKSGDVSRNVSSSLKCSPDAVALVFARDRDKAHGVGDIEFHFALSNGVTA IGPRFKAASVKVRNSESVTWLTAKREGQQEVLDGQHILDHINNEMENHTEYVDLYIGV TRLRNCSVGSDKPRLMTSLALHGVVGGDEEYLYVDGVGIRTGDYFQFYLSDPKTALPS CRNVSSTLRNLKLEWDTKSAHSTSAGINATDKKEIFG" CDS complement(join(23758469..23758517,23759683..23759801, 23760084..23760265,23761262..23761417,23761992..23762031, 23762126..23762227,23762387..23762506,23762598..23762690, 23762783..23762890,23762998..23763225)) /locus_tag="TCM_014665" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG014667t1" /codon_start=1 /product="F-box family protein, putative isoform 3" /protein_id="EOY22513.1" /db_xref="Phytozome:POPTR_0015s11080.1" /db_xref="TAIR:AT5G63520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFD9" /translation="MENKKRSSASPSTTNKKESKGFCLMNHDLLQNILSRLPAASFAS AACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQEVFGKVMSEPIRPHFAMASVGP GFHFKDVLQFMVEKLGSRTPIILSSVSGIFGRDALTHEFREVKWTNGNVDDEVSTYTG IVLNVGYVPGLKVEAIPLLQQKKTPQGSMIDKFVMDIKSYTSSMSGCTSPLAIIMIGD ADVDQKPIIEKLDYAMSMETIIVGDERGQFVYKSGDVSRNVSSSLKCSPDAVALVFAR DRDKAHGVGDIEFHFALSNGVTAIGPRFKAASVKVRNSESVTWLTAKREGQQEVLDGQ HILDHINNEMENHTEYVDLYIGVTRLRNCSVGSDKPRLMTSLALHGVVGSQNCITIMQ ECLLNP" CDS complement(join(23758469..23758517,23759683..23759801, 23760084..23760265,23761262..23761417,23761992..23762031, 23762126..23762227,23762387..23762506,23762598..23762690, 23762783..23762890,23762998..23763225)) /locus_tag="TCM_014665" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG014667t1" /codon_start=1 /product="F-box family protein, putative isoform 3" /protein_id="EOY22515.1" /db_xref="Phytozome:POPTR_0015s11080.1" /db_xref="TAIR:AT5G63520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFD9" /translation="MENKKRSSASPSTTNKKESKGFCLMNHDLLQNILSRLPAASFAS AACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQEVFGKVMSEPIRPHFAMASVGP GFHFKDVLQFMVEKLGSRTPIILSSVSGIFGRDALTHEFREVKWTNGNVDDEVSTYTG IVLNVGYVPGLKVEAIPLLQQKKTPQGSMIDKFVMDIKSYTSSMSGCTSPLAIIMIGD ADVDQKPIIEKLDYAMSMETIIVGDERGQFVYKSGDVSRNVSSSLKCSPDAVALVFAR DRDKAHGVGDIEFHFALSNGVTAIGPRFKAASVKVRNSESVTWLTAKREGQQEVLDGQ HILDHINNEMENHTEYVDLYIGVTRLRNCSVGSDKPRLMTSLALHGVVGSQNCITIMQ ECLLNP" gene complement(23763857..23768976) /locus_tag="TCM_014667" /note="dbxref CacaoGD:Thecc1EG014667" mRNA complement(join(23763857..23764616,23764880..23764992, 23765186..23765364,23766490..23766642,23766918..23766957, 23767053..23767154,23767467..23767613,23767698..23767790, 23767954..23768061,23768207..23768976)) /locus_tag="TCM_014667" /product="Skp2-like, FIST C domain, FIST domain, N-terminal isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014479" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014665t1" /inference="similar to AA sequence:ricco:30147.m014479" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5482t2" mRNA complement(join(23763897..23764616,23764880..23764992, 23765186..23765364,23766574..23766642,23766918..23766957, 23767053..23767154,23767467..23767613,23767698..23767790, 23767954..23768061,23768207..23768540)) /locus_tag="TCM_014667" /product="Skp2-like, FIST C domain, FIST domain, N-terminal isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014479" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014665t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008557001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc313t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5482t2" CDS complement(join(23764157..23764616,23764880..23764992, 23765186..23765364,23766574..23766642,23766918..23766957, 23767053..23767154,23767467..23767613,23767698..23767790, 23767954..23768061,23768207..23768380)) /locus_tag="TCM_014667" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014665t1" /codon_start=1 /product="Skp2-like, FIST C domain, FIST domain, N-terminal isoform 2" /protein_id="EOY22517.1" /db_xref="Phytozome:GSVIVT01008557001" /db_xref="TAIR:AT5G63520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFE0" /translation="MGCLAAVNDDILQNILSRLPALSFASAACVSKSWNKVCDRVLSR PKLVSALSLNPSLPDAVKEVLEKVLSSPIRPQFAIASIGLQFSLEEAHQLITEKLGSR TPVITNATFGIIGRDALTNTMKEVRWNFDPEEDNSNSQGSDAASNFNRGIVLIVGFLP GLKVDTVPLLRPKREPRFTMIDKFMMDIRDYTASVSGCIAPAGIILFGDQHTDLTPVL AEIDCAMPEETVIVGDASCRFLFRSGGIGETRFHVTLSTGVMPFGPELRAVSVTAKGS ECSWLTACMNGYDEILDSQRLLDDISDEMDDESTDLYIGVIQKRPSSIEPEKLELRTY LAFYEVLGGDEEYLVVDGVGIRPGDTFLFYHSDSDTASSSCLNAFENLKVLKAASSSK TRYSIRDAAAGGGGSNDEVFGGLMFSCHYRGESYFDSFPFYSNFPGAPLAGVVCNREI GRDSTGSSTSMWQQAKGESPARCSLHVCTTVFLVLSFVPPSADH" CDS complement(join(23764157..23764616,23764880..23764992, 23765186..23765364,23766490..23766642,23766918..23766957, 23767053..23767154,23767467..23767613,23767698..23767790, 23767954..23768061,23768207..23768380)) /locus_tag="TCM_014667" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014479; paralog of Thecc1EG014665t1" /codon_start=1 /product="Skp2-like, FIST C domain, FIST domain, N-terminal isoform 1" /protein_id="EOY22516.1" /db_xref="TAIR:AT5G63520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFE0" /translation="MGCLAAVNDDILQNILSRLPALSFASAACVSKSWNKVCDRVLSR PKLVSALSLNPSLPDAVKEVLEKVLSSPIRPQFAIASIGLQFSLEEAHQLITEKLGSR TPVITNATFGIIGRDALTNTMKEVRWNFDPEEDNSNSQGSDAASNFNRGIVLIVGFLP GLKVDTVPLLRPKREPRFTMIDKFMMDIRDYTASVSGCIAPAGIILFGDQHTDLTPVL AEIDCAMPEETVIVGDASCRFLFRSGGNSQSSITDLYYFDAVALVFAGDKDKPHGIGE TRFHVTLSTGVMPFGPELRAVSVTAKGSECSWLTACMNGYDEILDSQRLLDDISDEMD DESTDLYIGVIQKRPSSIEPEKLELRTYLAFYEVLGGDEEYLVVDGVGIRPGDTFLFY HSDSDTASSSCLNAFENLKVLKAASSSKTRYSIRDAAAGGGGSNDEVFGGLMFSCHYR GESYFDSFPFYSNFPGAPLAGVVCNREIGRDSTGSSTSMWQQAKGESPARCSLHVCTT VFLVLSFVPPSADH" gene complement(23769471..23773492) /locus_tag="TCM_014668" /note="dbxref CacaoGD:Thecc1EG014668" mRNA complement(join(23769471..23770593,23771199..23771332, 23772260..23772777,23773239..23773283,23773436..23773492)) /locus_tag="TCM_014668" /product="Squamosa promoter-binding protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s11100.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11100.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8837t1" mRNA complement(join(23769471..23770593,23771199..23771332, 23772260..23772777,23772987..23773158)) /locus_tag="TCM_014668" /product="Squamosa promoter-binding protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s11100.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11100.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b014169t1a2; alternateUTRof:Thecc1EG014668t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8837t1" CDS complement(join(23769983..23770593,23771199..23771332, 23772260..23772663)) /locus_tag="TCM_014668" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Squamosa promoter-binding protein isoform 1" /protein_id="EOY22518.1" /db_xref="Phytozome:POPTR_0015s11100.1" /db_xref="TAIR:AT5G50570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B8Y9B2" /translation="MDWNLKATSWDLTELVNEAVPTIDVANGSSSYGVPRNEGDFSVD LKLGQVGNSGEESMNKWKEPGELKMESSPSKRARATNNGTHQVSCLVDGCNSDLSSCR DYHRRHKVCELHSKTPQVMINGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRR RKPQPDPLSRSGSYFSNYQGTQMSPFSNLQVYPSTTVVKPTWPGVTNSETDSRHLNQQ QQLHSPEKRNLVLGSSSSNYRGGKQFMFLQGENNTPQNQTLPEASVCQPLLRATPFSE GSGGSHTMFCDRSTTPVQDSDCALSLLSSPQTQTSGISLSSMVQPRSFPLVQPLGPSL QNHIIEPMDSVVVANGRDTAVHCPGMFHMGSGGSSGNEAPQTLPFHWQ" CDS complement(join(23769983..23770593,23771199..23771332, 23772260..23772663)) /locus_tag="TCM_014668" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Squamosa promoter-binding protein isoform 1" /protein_id="EOY22519.1" /db_xref="Phytozome:POPTR_0015s11100.1" /db_xref="TAIR:AT5G50570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B8Y9B2" /translation="MDWNLKATSWDLTELVNEAVPTIDVANGSSSYGVPRNEGDFSVD LKLGQVGNSGEESMNKWKEPGELKMESSPSKRARATNNGTHQVSCLVDGCNSDLSSCR DYHRRHKVCELHSKTPQVMINGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRR RKPQPDPLSRSGSYFSNYQGTQMSPFSNLQVYPSTTVVKPTWPGVTNSETDSRHLNQQ QQLHSPEKRNLVLGSSSSNYRGGKQFMFLQGENNTPQNQTLPEASVCQPLLRATPFSE GSGGSHTMFCDRSTTPVQDSDCALSLLSSPQTQTSGISLSSMVQPRSFPLVQPLGPSL QNHIIEPMDSVVVANGRDTAVHCPGMFHMGSGGSSGNEAPQTLPFHWQ" gene 23776415..23780685 /locus_tag="TCM_014669" /note="dbxref CacaoGD:Thecc1EG014669" mRNA join(23776415..23776633,23776708..23776795, 23777327..23777415,23777537..23777597,23777700..23777751, 23777876..23778071,23778238..23778317,23778451..23778567, 23779155..23779205,23779411..23779477,23779890..23779993, 23780074..23780178,23780278..23780685) /locus_tag="TCM_014669" /product="SUMO-activating enzyme 1A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s11110.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008554001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06806t00001" mRNA join(23776446..23776633,23776708..23776795, 23777502..23777605,23777670..23777674,23777700..23777751, 23777876..23778071,23778238..23778317,23778451..23778567, 23779155..23779205,23779411..23779477,23779890..23779993, 23780074..23780178,23780278..>23780378) /locus_tag="TCM_014669" /product="DNA damage tolerance protein rad31, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s11110.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008554001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc196t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc196t9; inference alignment:Newbler:10:TSA:cgbaP2_g06806t00001" CDS join(23776591..23776633,23776708..23776795, 23777327..23777415,23777537..23777597,23777700..23777751, 23777876..23778071,23778238..23778317,23778451..23778567, 23779155..23779205,23779411..23779477,23779890..23779993, 23780074..23780178,23780278..23780394) /locus_tag="TCM_014669" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="SUMO-activating enzyme 1A isoform 1" /protein_id="EOY22520.1" /db_xref="Phytozome:GSVIVT01008554001" /db_xref="TAIR:AT5G50580.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAD1" /translation="MPKKLKHQNNEQDAGLKELLRIVDEPKARWILWRTQPLIPIFSR FARLLKVASFYGYCEHLEFALKLTVQVVVEQETALYDRQIRVWGADAQRRLSKSHILV YGIKGTVAEFCKNIVLAGVGSLTLVDDRVVNEEALSANFLILPDDNLFQGKTLAEVCC DSLKEFNPMVRVSVEKGDISTFGVEFFEKFDVVVISCCSLAKKKLINQKCRKLSKRVA FYTVDCRGSCGEIFVDLQNYKYSKKKLEENIDCQLEYPSFEEAISVPWRALPRRVSKL YFAMRVIEGFEDVEGSNPGETLIADLPGVLKLRKELCETNSLNESQIPNALLERLLIG TREYPPVCAIIGGILGQEVIKAISGKGDPLKNFFFFDAMDGKGLIEDISEPNTGS" mRNA join(23777390..23777415,23777502..23777605, 23777670..23777674,23777700..23777751,23777876..23778071, 23778238..23778317,23778451..23778567,23779155..23779205, 23779411..23779477,23779890..23779993,23780074..23780178, 23780278..>23780378) /locus_tag="TCM_014669" /product="DNA damage tolerance protein rad31, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s11110.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008554001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc196t9; alternateUTRof:Thecc1EG014669t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc196t9; inference alignment:Newbler:10:TSA:cgbaP2_g06806t00001" mRNA join(23777434..23777597,23777700..23777751, 23777876..23778071,23778238..23778317,23778454..23778567, 23779155..23779205,23779411..23779477,23779890..23779993, 23780074..23780178,23780278..23780538) /locus_tag="TCM_014669" /product="DNA damage tolerance protein rad31, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s11110.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008554001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02050c00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc196t9; inference alignment:Newbler:10:TSA:cgbaP2_g06806t00001" CDS join(23777515..23777597,23777700..23777751, 23777876..23778071,23778238..23778317,23778454..23778567, 23779155..23779205,23779411..23779477,23779890..23779993, 23780074..23780178,23780278..23780394) /locus_tag="TCM_014669" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="DNA damage tolerance protein rad31, putative isoform 4" /protein_id="EOY22523.1" /db_xref="Phytozome:GSVIVT01008554001" /db_xref="TAIR:AT5G50580.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAD1" /translation="MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVYGIKGTVA EFCKNIVLAGVGSLTLVDDRVVNEEALSANFLILPDDNLFQGKTLAEVCCDSLKEFNP MVRVSVEKGDISTFGVEFFEKFDVVVISCCSLAKKLINQKCRKLSKRVAFYTVDCRGS CGEIFVDLQNYKYSKKKLEENIDCQLEYPSFEEAISVPWRALPRRVSKLYFAMRVIEG FEDVEGSNPGETLIADLPGVLKLRKELCETNSLNESQIPNALLERLLIGTREYPPVCA IIGGILGQEVIKAISGKGDPLKNFFFFDAMDGKGLIEDISEPNTGS" CDS join(23777555..23777605,23777670..23777674, 23777700..23777751,23777876..23778071,23778238..23778317, 23778451..23778567,23779155..23779205,23779411..23779477, 23779890..23779993,23780074..23780178,23780278..>23780376) /locus_tag="TCM_014669" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA damage tolerance protein rad31, putative isoform 2" /protein_id="EOY22521.1" /db_xref="Phytozome:GSVIVT01008554001" /db_xref="TAIR:AT5G50580.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAD1" /translation="MIAKLGFGVLMLKEGNFHILSKSHILVYGIKGTVAEFCKNIVLA GVGSLTLVDDRVVNEEALSANFLILPDDNLFQGKTLAEVCCDSLKEFNPMVRVSVEKG DISTFGVEFFEKFDVVVISCCSLAKKKLINQKCRKLSKRVAFYTVDCRGSCGEIFVDL QNYKYSKKKLEENIDCQLEYPSFEEAISVPWRALPRRVSKLYFAMRVIEGFEDVEGSN PGETLIADLPGVLKLRKELCETNSLNESQIPNALLERLLIGTREYPPVCAIIGGILGQ EVIKAISGKGDPLKNFFFFDAMDGKGLIEDISE" CDS join(23777555..23777605,23777670..23777674, 23777700..23777751,23777876..23778071,23778238..23778317, 23778451..23778567,23779155..23779205,23779411..23779477, 23779890..23779993,23780074..23780178,23780278..>23780376) /locus_tag="TCM_014669" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DNA damage tolerance protein rad31, putative isoform 2" /protein_id="EOY22522.1" /db_xref="Phytozome:GSVIVT01008554001" /db_xref="TAIR:AT5G50580.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAD1" /translation="MIAKLGFGVLMLKEGNFHILSKSHILVYGIKGTVAEFCKNIVLA GVGSLTLVDDRVVNEEALSANFLILPDDNLFQGKTLAEVCCDSLKEFNPMVRVSVEKG DISTFGVEFFEKFDVVVISCCSLAKKKLINQKCRKLSKRVAFYTVDCRGSCGEIFVDL QNYKYSKKKLEENIDCQLEYPSFEEAISVPWRALPRRVSKLYFAMRVIEGFEDVEGSN PGETLIADLPGVLKLRKELCETNSLNESQIPNALLERLLIGTREYPPVCAIIGGILGQ EVIKAISGKGDPLKNFFFFDAMDGKGLIEDISE" gene 23780761..23781525 /locus_tag="TCM_014670" /note="dbxref CacaoGD:Thecc1EG014670" mRNA 23780761..23781525 /locus_tag="TCM_014670" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.59 coverage" CDS 23781166..23781384 /locus_tag="TCM_014670" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22524.1" /translation="MLPNQSLKAIILTGGMKNCTKKKKAIENYRETKNGNHEENDVSR SCAGNPGLSFTLSKVIITPLVGLDDDLV" gene 23781635..23783993 /locus_tag="TCM_014671" /note="dbxref CacaoGD:Thecc1EG014671" mRNA join(23781635..23782401,23782734..23783993) /locus_tag="TCM_014671" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014475" /inference="similar to AA sequence:Phytozome:POPTR_0012s10280.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5492t1" CDS join(23781637..23782401,23782734..23783072) /locus_tag="TCM_014671" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22525.1" /db_xref="Phytozome:POPTR_0012s10280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3U5" /translation="MIESKKERDPTMERPSVEEEVTDDQKLHHLFKNLEQEWDFIKQR PERTLHTRSTGSSKMIQTLRLLNNSPRKLMSSLQHRSSPSERVAWKVRTNDLAVEEIL TERRAAIESGKLKGRRLFEGAEGVTEMGFGRDEVTCSGWEIGLDQESEVRSVFSYESD NDVDEIWGRKEVSSASCPRCCSCSPSSSSSSLCAEKEQRGGTEVATLAEKRIVRDVGS GRGRRWMVIIVWLTITLAVCVVGIISRRNFCLYEDEEDMLFDYELLTSLHAINHVALR VRKHGTVPSMYFLAPLFKCSCNKQREELNFWNVKLPFISFSFVMLVGKFGPLAAGNGI SIGFATSFFKAWMLYPFPADTRKAWKILFFAAL" gene complement(23782957..23784598) /locus_tag="TCM_014672" /note="dbxref CacaoGD:Thecc1EG014672" mRNA complement(join(23782957..23783643,23784195..23784598)) /locus_tag="TCM_014672" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS complement(join(23783291..23783643,23784195..23784384)) /locus_tag="TCM_014672" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22526.1" /translation="MVERSLSMREVRGSIPRISKDTFNLMRKSRGLFPVNERVSRKSQ GNGTPLFLGEPLPVLPVPGALASPSASELASRLIWMKERSKILLALSMELEMSFMPPR IFFVVLGPEYYVRRVTLNFQYMGGCPWRVKKDLNSPLNGLKFSKVGVLYSNGMREDTL DDAGPGLPWAAPSVLSLREP" gene complement(23785784..23786854) /locus_tag="TCM_014673" /note="dbxref CacaoGD:Thecc1EG014673" mRNA complement(join(23785784..23786066,23786523..23786854)) /locus_tag="TCM_014673" /product="WRKY-type DNA binding protein 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033063001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017248t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008553001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2686t1_C2" CDS complement(join(23785889..23786066,23786523..23786836)) /locus_tag="TCM_014673" /note="paralog of Thecc1EG017248t1" /codon_start=1 /product="WRKY-type DNA binding protein 1" /protein_id="EOY22527.1" /db_xref="Phytozome:GSVIVT01008553001" /db_xref="TAIR:AT5G13080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5IZC7" /translation="MENYHILFPDGSSASPSLLTMTNHRSYLQGNDTITATKVGNQCE DLDVKDVSSESEVKVGKKGDNKGMRKHKYAFQTRSQVDILDDGYRWRKYGQKTVKNSK FPRSYYRCTHKECNVKKQVQRSSKDDEIVVTTYEGIHTHPVEKFTENFEQILRQMQTY NPL" mobile_element complement(23788098..23788188) /note="source:CACAO_Mariner_E220_scaffold_9 14735 14825" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(23789305..23791390) /locus_tag="TCM_014674" /note="dbxref CacaoGD:Thecc1EG014674" mRNA complement(23789305..23791390) /locus_tag="TCM_014674" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014472" /inference="similar to AA sequence:Phytozome:POPTR_0015s11150.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14522t00001" CDS complement(23790261..23790980) /locus_tag="TCM_014674" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22528.1" /db_xref="Phytozome:POPTR_0015s11150.1" /db_xref="TAIR:AT5G13090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSW9" /translation="MKVKKKGGVYPPLSSPSSPVCYRDPNSVLKVLPVAILTLALALP PQDQEVLAYMITRSIISTTNPSTFNHQSKSKCKKGKAPLFQCGCFDCYTRFWHRWDSS PNRDLIHQVIEAFEDHLLQDEVSKKHCKAARKKDKEILSIYESNVVSVNALHREQSQD SEISMVENEALAEAENGGGPGGREHEGEGNVGDEVTGNLEMEVVTVATGVSHKGLARK VLPDVVGLFNSRLWSLWGPSI" gene 23791485..23813949 /locus_tag="TCM_014675" /note="dbxref CacaoGD:Thecc1EG014675" mRNA join(23791485..23791747,23801226..23801563, 23801684..23801939,23802050..23802305,23802371..23802489, 23802972..23804014,23813906..23813949) /locus_tag="TCM_014675" /product="Heavy metal transport/detoxification superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g17680.1" /inference="similar to AA sequence:ricco:30147.m014470" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8886t1" gene 23794375..23795016 /locus_tag="TCM_014676" /note="dbxref CacaoGD:Thecc1EG014676" mRNA join(23794375..23794490,23794711..23795016) /locus_tag="TCM_014676" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage" CDS join(23794391..23794490,23794711..23794817) /locus_tag="TCM_014676" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22530.1" /translation="MYRRGALRKLAMSPMPRHIGVGLVGACLGATFAKSPLGLCMKAR NGQTEECSATKPHVTFGVFEIISL" CDS join(23801555..23801563,23801684..23801939, 23802050..23802305,23802371..23802489,23802972..23803423) /locus_tag="TCM_014675" /note="dbxref ricco:30147.m014470" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein, putative" /protein_id="EOY22529.1" /db_xref="TAIR:AT5G63530.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAC5" /translation="MGEEEKKPAEEKQMEEKKPEDGKKGEEEKKEEAKPAEKPAEEKK GEESKDEKESKEKSPAPPQEIILKVYMHCEGCARKVRRCLRGFEGVDDVMTDCKSNKV VVKGEKADPLKVLERVQRKSHRQVELLSPIPKPPAPEEKKAEEKEKPKPEEKKEEVLP SFSQLFSFALPRKIVFFFVSLVVQPQVITVVLKVHMHCEACAQEIKKRIQRMKGVESA EPDLKSSEVTVKGVFDPPKLVEYVYKRTGKHAVIVKQEPENKKEEEKAKDANKEEKKG KEGGDKEKKEGGGEENKNKKEGGDSAEAKAGAAGAAAALAAEGGAEETMFVELRRNEY YSYPPRYATEFYAYPQIFSDENPNACSVM" gene complement(23809602..23810336) /locus_tag="TCM_014678" /note="dbxref CacaoGD:Thecc1EG014678" mRNA complement(23809602..23810336) /locus_tag="TCM_014678" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(23809842..23810066) /locus_tag="TCM_014678" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22531.1" /translation="MGSHGHRPVNTMDPSRGTRPPTQLVPDLDNINKIGLEATRPVAG RAEVFGDGKGIFRGCHKKCRAKDGMEDDEM" gene complement(23811089..23816220) /locus_tag="TCM_014679" /note="dbxref CacaoGD:Thecc1EG014679" mRNA complement(join(23811089..23811696,23814151..23814401, 23814608..23814676,23814792..23814969,23815050..23815163, 23815285..23815418,23815592..23816220)) /locus_tag="TCM_014679" /product="Palmitoyl-acyl carrier protein thioesterase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014468" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037945t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s10330.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4235t1" CDS complement(join(23811603..23811696,23814151..23814401, 23814608..23814676,23814792..23814969,23815050..23815163, 23815285..23815418,23815592..23816008)) /locus_tag="TCM_014679" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037945t2" /codon_start=1 /product="Palmitoyl-acyl carrier protein thioesterase isoform 1" /protein_id="EOY22532.1" /db_xref="Phytozome:POPTR_0012s10330.1" /db_xref="TAIR:AT1G08510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAC3" /translation="MASMAKASNVTSLFLGGVCKEEKTKNVAMAKLGFYSPRNLIKPK RKGLLLIASAKNPHNLDMINGKKVNGIFVGEAPYTGKKSTVLIKEHVPYKQAHAASLV GRFVEDRHVYRQTFIIRSYETGPDKTATMETVMNLLQETALNHVRSSGLAGNGFGATR EMSLRKLIWVVTRIHVQVERYSCWGDVVEIDTWVDAAGKNAMRRDWIIRDYNTQEIIT RATSTWVIMNHETRRLTKIPEQVRQEVIPFYLNRIAIAEEKNDIGKIDKLTDENAERI RSGLAPRWSDMDANQHVNNVKYIGWILESVPMDVLEEYRLTSMTLEYRRECRKSNLLE SLTSSTANVTEDSNNNSNNRKADLEYTHLLRMQDDVAEIVRARSEWQSKDKHSWLVEA SEQIGRQEFISSIFILDIPKPHQLKK" mRNA complement(join(23813886..23814473,23814608..23814676, 23814792..23814969,23815050..23815163,23815285..23815418, 23815592..23816220)) /locus_tag="TCM_014679" /product="Palmitoyl-acyl carrier protein thioesterase isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014468" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037945t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s10330.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b014178t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2105t2" CDS complement(join(23814459..23814473,23814608..23814676, 23814792..23814969,23815050..23815163,23815285..23815418, 23815592..23816008)) /locus_tag="TCM_014679" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037945t2" /codon_start=1 /product="Palmitoyl-acyl carrier protein thioesterase isoform 2" /protein_id="EOY22533.1" /db_xref="Phytozome:POPTR_0012s10330.1" /db_xref="TAIR:AT1G08510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAC3" /translation="MASMAKASNVTSLFLGGVCKEEKTKNVAMAKLGFYSPRNLIKPK RKGLLLIASAKNPHNLDMINGKKVNGIFVGEAPYTGKKSTVLIKEHVPYKQAHAASLV GRFVEDRHVYRQTFIIRSYETGPDKTATMETVMNLLQETALNHVRSSGLAGNGFGATR EMSLRKLIWVVTRIHVQVERYSCWGDVVEIDTWVDAAGKNAMRRDWIIRDYNTQEIIT RATSTWVIMNHETRRLTKIPEQVRQEVIPFYLNRIAIAEEKNDIGKIDKLTDENAERI RSGLAPRWSDMDANQHVNNVKYIGWILEAFTN" mobile_element 23819595..23820250 /note="source:CACAO_M_S_E14008_F3_scaffold_2 1 656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23820240..23821580 /note="source:CACAO_M_S_E14008_F3_scaffold_2 351 1687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23822912..23825873 /note="source:CACAO_M_E22920_F33_scaffold_3 1 2962" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23826869..23828153 /locus_tag="TCM_014680" /note="dbxref CacaoGD:Thecc1EG014680" mRNA join(23826869..23827083,23827334..23827456, 23827539..23827920) /locus_tag="TCM_014680" /product="HVA22 D isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014467" /inference="similar to AA sequence:frave:gene06288" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01009t00003; inference alignment:Newbler:10:TSA:cgbaP1_g11398t00001" mRNA join(23826871..23827083,23827200..23827226, 23827334..23827456,23827539..23827743,23827915..23828153) /locus_tag="TCM_014680" /product="HVA22 E isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014467" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013939t1" /inference="similar to AA sequence:Phytozome:Glyma04g37440.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g11398t00001" CDS join(23827037..23827083,23827200..23827226, 23827334..23827456,23827539..23827743,23827915..23827935) /locus_tag="TCM_014680" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG013939t1" /codon_start=1 /product="HVA22 E isoform 1" /protein_id="EOY22534.1" /db_xref="Phytozome:Glyma04g37440.1" /db_xref="TAIR:AT5G50720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFE9" /translation="MGRFWTLLTNLHSLAGPVVMLLYPLYASVIAIESPAKDDDEQWL AYWILYSLLTLTEMVLQSVLEWIPIWYSVKLLFMAWLVLPQFRGAAFIYEKFVREQIK KYGILREHQGHHSGSPNGKGKKKFVQFIVPKGGEQEAY" CDS join(23827037..23827083,23827334..23827456, 23827539..23827752) /locus_tag="TCM_014680" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene06288" /codon_start=1 /product="HVA22 D isoform 3" /protein_id="EOY22536.1" /db_xref="TAIR:AT5G50720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFE9" /translation="MGRFWTLLTNLHSLAGYASVIAIESPAKDDDEQWLAYWILYSLL TLTEMVLQSVLEWIPIWYSVKLLFMAWLVLPQFRGAAFIYEKFVREQIKKYGILREHQ GHHSGSPNGKGKKKFVQFIVPKGVS" mRNA join(23827082..23827226,23827334..23827456, 23827539..23827743,23827915..23828116) /locus_tag="TCM_014680" /product="HVA22 E isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014467" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001835t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400028282" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00422t00002; inference alignment:Newbler:10:TSA:cgbaP1_g11398t00001" CDS join(23827210..23827226,23827334..23827456, 23827539..23827743,23827915..23827935) /locus_tag="TCM_014680" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG001835t1" /codon_start=1 /product="HVA22 E isoform 2" /protein_id="EOY22535.1" /db_xref="Phytozome:PGSC0003DMP400028282" /db_xref="TAIR:AT5G50720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFE9" /translation="MLLYPLYASVIAIESPAKDDDEQWLAYWILYSLLTLTEMVLQSV LEWIPIWYSVKLLFMAWLVLPQFRGAAFIYEKFVREQIKKYGILREHQGHHSGSPNGK GKKKFVQFIVPKGGEQEAY" gene 23828331..23829322 /locus_tag="TCM_014681" /note="dbxref CacaoGD:Thecc1EG014681" mRNA 23828331..23829322 /locus_tag="TCM_014681" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.10 coverage" CDS 23828460..23828672 /locus_tag="TCM_014681" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22537.1" /translation="MTKKSKTMILREVVIFKASFGWTPRQQGAVWFLPHRTPPIRALR RNVSPVRDEAFSGADFFYFVGLKQGQ" mobile_element 23832663..23832738 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3873 3948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23832682..23832780) /note="source:scaffold_3_CACTA_0382 1822 1918" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23832721..23833569) /note="source:CACAO_M_E12256_F312_scaffold_3 195 1044" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23834531..23835622 /locus_tag="TCM_014682" /note="dbxref CacaoGD:Thecc1EG014682" mRNA 23834531..23835622 /locus_tag="TCM_014682" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10350.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10350.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14816t00001" CDS 23834686..23835303 /locus_tag="TCM_014682" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22538.1" /db_xref="Phytozome:POPTR_0012s10350.1" /translation="MDPILMQKFQAIKKSKKCKKQQLLDKFFLYTVIAFTSSVFCSSP FWFPYLCSSMKGFLFISLPKMSSIFYSPKLLFLVGNLIVVLLIGESRFFAAGPSLPGD AYYDEYVDRSRSLRNSSTLELKKEQKMEPSDQENLKRTCQVGGKVVSVTGRLVEEIKE VKREKEALGGEHELILPTEELKKRADDFIARVNRQRRLEARLLLN" gene 23837387..23839553 /locus_tag="TCM_014683" /note="dbxref CacaoGD:Thecc1EG014683" mRNA join(23837387..23837893,23837998..23838190, 23838296..23838384,23838525..23838656,23838785..23838949, 23839048..23839553) /locus_tag="TCM_014683" /product="Hydroxysteroid dehydrogenase 1" /inference="alignment:exonerate-protein:2:frave:gene06286" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014684t1" /inference="similar to AA sequence:ricco:30147.m014465" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08909t00001" CDS join(23837711..23837893,23837998..23838190, 23838296..23838384,23838525..23838656,23838785..23838949, 23839048..23839341) /locus_tag="TCM_014683" /note="dbxref ricco:30147.m014465; paralog of Thecc1EG014684t1" /codon_start=1 /product="Hydroxysteroid dehydrogenase 1" /protein_id="EOY22539.1" /db_xref="TAIR:AT5G50700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LUF1" /translation="MDLIHKFLNLVAPWFTFFSLCLFLPPFYLFKFFLATLGSFFSEN VSGKVVIITGASSGIGEHLAYEYGRRGARLALTARREKSLQEVADRAHDLGSPDVITI RADVSNVDDCQRLVEETVNHFGRLDHLVNNAGITSVCMFEGAPPDMTNFRAVMDTNFW GSVYTTRFAVPHLRNSKGKIVVLSSANSWLPEPRTSVYNASKAALAAFFDTLRIELGQ DVTITIVTPGHIESEITRDKHLSKEGKMEVEQDMRDVQVSAIPVASVSECAQAIVNSA CRGDRSLTQPSWYSATCLWKLFFPEVIEWGCRLFYLTSPGVPHQEAPSKKILDLTAGE KKVLYPSTIQAPEIKTD" mobile_element complement(23839944..23840047) /note="source:CACAO_on_S_E390_scaffold_9 1752 1868" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(23840083..23840291) /note="source:CACAO_on_S_E390_scaffold_9 1660 1873" /mobile_element_type="transposon:TIR/Mutator" gene 23840615..23847566 /locus_tag="TCM_014684" /note="dbxref CacaoGD:Thecc1EG014684" mRNA join(23840615..23840712,23841227..23841336, 23843354..23843714,23843836..23844028,23844143..23844228, 23845928..23846059,23846148..23846279,23846386..23847566) /locus_tag="TCM_014684" /product="Hydroxysteroid 11-beta-dehydrogenase 1-like protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s11200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014685t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11200.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5535t2" CDS join(23840710..23840712,23841227..23841336, 23843354..23843714,23843836..23844028,23844143..23844228, 23845928..23846059,23846148..23846279,23846386..23846592) /locus_tag="TCM_014684" /note="paralog of Thecc1EG014685t1" /codon_start=1 /product="Hydroxysteroid 11-beta-dehydrogenase 1-like protein, putative" /protein_id="EOY22540.1" /db_xref="Phytozome:POPTR_0015s11200.1" /db_xref="TAIR:AT5G50700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T7I0" /translation="MVSTIESSKKRVLKKLESLRKSVTAAYSVERNRTQTPRVRVAIF ILSNPLPTLLTPLPAHKKSCLFHVSPLIDYSTSVIILVLQGASFSIQLQTAKAMDFIH KLINILFPPIAILLLLFFLPPYLIFKYFSYIIRSFCSENVAGKVVLITGASSGIGEHL AYEYARKGARLALIARREDRLCVVADESRRLGSPDVVVIPADVSKLEDCKRFIDKAVN YFGRLDHLASNAAIVKLGLFEDVTQISEFAPTMSTNFWGSAYGTHFAVPHLRKSKGKI IVIASVAGWAPLPKTSFYNAGKAALISFYETLRVEFGSDIGITIVTPGLIKTDMVQGE AFTSEVQVGFIPGESAEGCAKAIVASACRGDRCLTEPSWYRVGPLLKMLCPELLEWAC RLTLVGRPGSSKKTS" mobile_element complement(23840804..23840856) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3898 3949" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23848645..23854453 /locus_tag="TCM_014685" /note="dbxref CacaoGD:Thecc1EG014685" mRNA join(23848645..23848870,23848962..23849154, 23849248..23849333,23849421..23849552,23849642..23849770, 23849953..23850078,23851997..23852086,23852171..23852412, 23852646..23852770,23853072..23853163,23853243..23853746, 23854213..23854453) /locus_tag="TCM_014685" /product="Hydroxysteroid dehydrogenase 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014684t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04940.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g08284t00001" CDS join(23848691..23848870,23848962..23849154, 23849248..23849333,23849421..23849552,23849642..23849770, 23849953..23850078,23851997..23852086,23852171..23852412, 23852646..23852770,23853072..23853073) /locus_tag="TCM_014685" /note="paralog of Thecc1EG014684t1" /codon_start=1 /product="Hydroxysteroid dehydrogenase 2, putative" /protein_id="EOY22541.1" /db_xref="Phytozome:POPTR_0016s04940.1" /db_xref="TAIR:AT5G50690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6TI76" /translation="MEINKLLNIVFPPLLIIALVFILPPFLVFKLLCSIQRFVYKENV AGKVVLITGASSGIGEHLAYEYARRGARLALVARRTDRLQKVAERARQMGSPDVIVIT ADVSKVEDCKRFVDKTVNHFGQLDHLVNNAGVGAVQSFKVTNNISDFVPVMDINFWGS VYGTHFAVPHLRKRRGKMIVMSSASAWLGLPKTSFYAASKAAQIGFYESLRIEVGPEI GITIVTPGFVESEMTRSNQQRKGKLQFLGNEPADVCAKAIVESTCRGDMYLTEPFWVR PLYLLKFLNFLKRTINIENLSGKVVLITGASSGIGEVLLWAMKHLAHEYANRGARLAL AARREHRPRAVAEKASQLGSPDAIVVRVDVSKAEDCKQFVNKAVVKISRGIRGKIEKS VQSEISLKYHLHLQLSITVDHFGNVSDAASHFSQQLRPKFSE" mobile_element 23851117..23851276 /note="source:scaffold_5_CACTA_0610 5129 5297" /mobile_element_type="transposon:TIR/CACTA" gene 23854505..23856934 /locus_tag="TCM_014686" /note="dbxref CacaoGD:Thecc1EG014686" mRNA join(23854505..23855282,23855386..23855578, 23855684..23855769,23855936..23855951,23856132..23856313, 23856403..23856934) /locus_tag="TCM_014686" /product="Glucose 1-dehydrogenase, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400050470" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014683t1" /inference="similar to AA sequence:ricco:30147.m014462" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00164t00002" CDS join(23855100..23855282,23855386..23855578, 23855684..23855769,23855936..23855951,23856132..23856313, 23856403..23856702) /locus_tag="TCM_014686" /note="dbxref ricco:30147.m014462; paralog of Thecc1EG014683t1" /codon_start=1 /product="Glucose 1-dehydrogenase, putative" /protein_id="EOY22542.1" /db_xref="TAIR:AT5G50770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAB7" /translation="MDLINKFMNAIVATISLIALFFLLHHYRFFKSLLSTVRTIFKEN VTGKVILITGASSGVGENLAYKYARRGARLALVARREHRLQEVAAIFEITGSPEAIYI LGDISKIEDCKRFVDATVNHFGHLDHLVTSAGVAPVCLFEDYDDITKASPAMDINFWA SQWPKASKAALISFYETLRIEFRTQIGITIVTLGLIKTEMTEGKFLSREGKLVVDREM RDVQVSLMPLESADKCAKAVVDSACRGENYLTLPSWTKATLLWKVFCPEIIEWWNRLL LMTGPGSSHGDVPSKKIFDVASRVKKFSLWMGGPFPKIVIKAP" gene complement(23856942..23862126) /locus_tag="TCM_014687" /note="dbxref CacaoGD:Thecc1EG014687" mRNA complement(join(23856942..23857671,23857857..23857985, 23858204..23858314,23858569..23858912,23859539..23859675, 23860242..23860387,23861092..23861262,23861439..23862126)) /locus_tag="TCM_014687" /product="Domain of Uncharacterized protein function, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014461" /inference="similar to AA sequence:Phytozome:GSVIVT01008582001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc908t4" CDS complement(join(23857501..23857671,23857857..23857985, 23858204..23858314,23858569..23858912,23859539..23859675, 23860242..23860387,23861092..23861262,23861439..23861945)) /locus_tag="TCM_014687" /codon_start=1 /product="Domain of Uncharacterized protein function, putative" /protein_id="EOY22543.1" /db_xref="Phytozome:GSVIVT01008582001" /db_xref="TAIR:AT5G63540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SH22" /translation="MPRRRLRLHCSSDEEEEEEQLDNEPPLESSAVTHQPITLSLPNP NPAEPLPISDDEFVDVYDSFTPPSSPPPEASETAAPVTSVESSDSPIGDLLLRMGLKL RREWLDSCVQGLQSSVPRFSTLDVSAKAKLCFQQFLFSDMNYSGGGILPENVDSMHLV DLKGPFVLQVDEIVNISCPLKGRYQDAPPGIKRCLKLSMTDGVQRVFGMEYRPIKDLQ VLAPAGLKVAICNIHIRRGLLVLVPESLEVLGGVVEDLEAARQRLVNEVNKPPRGKRS KTGVVPPLATRATLAAWPLNGVNAVEPTNNLTSQSAAPFQADERGATLDLSSTVTTQR TVEKPTAHIGGVNAVPNSSSDVVLDVERMQIDNVPISRENEVSNLNPDTAPDVEHIHM ADVVEHPLILSGDREVPFTYLASLSAKWAAIKDKATYVQGKIKCFLTGVKSFQYKQRT TYELLCYVDDGSLISEILIDHNVVQKGIGHSPQEVTAALSSSDKQIVSGMKEIMRQFQ TFLAHFEGMMLIEINKKSSLPIAIEMTQGCPASDARLLLRRLEPSASSQTPEHLPLDP IDISP" mobile_element complement(23864911..23865005) /note="source:scaffold_2_CACTA_0282 5407 5501" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23865561..23865615) /note="source:scaffold_10_CACTA_0140 2530 2585" /mobile_element_type="transposon:TIR/CACTA" gene 23866557..23872768 /locus_tag="TCM_014688" /note="dbxref CacaoGD:Thecc1EG014688" mRNA join(23866557..23867136,23870014..23870074, 23870204..23870249,23870372..23870486,23870569..23870636, 23870764..23871357,23871454..23871558,23871703..23872768) /locus_tag="TCM_014688" /product="ACT domain repeat 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008583001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017260t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008583001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5542t3" CDS join(23866851..23867136,23870014..23870074, 23870204..23870249,23870372..23870486,23870569..23870636, 23870764..23871357,23871454..23871558,23871703..23872044) /locus_tag="TCM_014688" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017260t1" /codon_start=1 /product="ACT domain repeat 6 isoform 1" /protein_id="EOY22544.1" /db_xref="Phytozome:GSVIVT01008583001" /db_xref="TAIR:AT3G01990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3V4" /translation="MLILLQAAEVQKLKGIEKREQSFKVPMEAKPVKLVAAMIMGLLV LGPNLVEGAFGIQLNPCTLPQCIAECKKALQDKFLSATCASGSQGKFCICLEHKEKMD DEFAKLIRRINPPRVVVDNDACEHATVIQVDSVNRHGILLEVVQVLADLNLVVTKAYI SSDAGWFMDVFYVTDYEGNKIRNERTLSYIQKTLETKVHFLNSLRSSVGVIPSKEHTS IELTGSDRPGLVSEVSAVLADLGCNVVNAEIWTHNARAAAVIYVTDQSTGHAIEDPKK LSIIKELLFNVMKGNSDFRTPRMSISSSGVMHRARRLHQMLFADRDFERPENVKFESA KPHVTVQDCSDRDYTVVTIRSLDRPKLLFDTICTLTDMEYVVFHGTVITGRMEAYQEY YIRHVDGFPISSEAEQQRVVECLEAAIERRAQEGLELELFTDDRFGLLSDITRIFREN GLCIRRAEISTKGGKAKDTFFVTDVSGNPVDAKTVDLIQHQIGQANLQVKGNSFLSPK LPKETARSFLFGNLFKGRSFQNFKLIKSCS" mRNA join(23869757..23870074,23870204..23870249, 23870372..23870486,23870569..23870636,23870764..23871357, 23871454..23871559,23871701..23871921,23872062..23872448) /locus_tag="TCM_014688" /product="ACT domain repeat 6 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008583001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017260t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008583001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1394t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1394t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5542t3" CDS join(23870028..23870074,23870204..23870249, 23870372..23870486,23870569..23870636,23870764..23871357, 23871454..23871559,23871701..23871921,23872062..23872094) /locus_tag="TCM_014688" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017260t1" /codon_start=1 /product="ACT domain repeat 6 isoform 2" /protein_id="EOY22545.1" /db_xref="Phytozome:GSVIVT01008583001" /db_xref="TAIR:AT3G01990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3V4" /translation="MDDEFAKLIRRINPPRVVVDNDACEHATVIQVDSVNRHGILLEV VQVLADLNLVVTKAYISSDAGWFMDVFYVTDYEGNKIRNERTLSYIQKTLETKVHFLN SLRSSVGVIPSKEHTSIELTGSDRPGLVSEVSAVLADLGCNVVNAEIWTHNARAAAVI YVTDQSTGHAIEDPKKLSIIKELLFNVMKGNSDFRTPRMSISSSGVMHRARRLHQMLF ADRDFERPENVKFESAKPHVTVQDCSDRDYTVVTIRSLDRPKLLFDTICTLTDMEYVV FHGTVITGRMEAYQEYYIRHVDGFPISSEAEQQRVVECLEAAIERRAQEEGLELELFT DDRFGLLSDITRIFRENGLCIRRAEISTKGGKAKDTFFVTDVSGNPVDAKTVDLIQHQ IGQANLQFLQGNSGVLP" gene complement(23872805..23876766) /locus_tag="TCM_014689" /note="dbxref CacaoGD:Thecc1EG014689" mRNA complement(join(23872805..23873350,23873458..23873621, 23873911..23873960,23874084..23874253,23874530..23875033, 23875524..23876044,23876166..23876766)) /locus_tag="TCM_014689" /product="Chromatin remodeling complex subunit, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008584001" /inference="similar to AA sequence:Phytozome:GSVIVT01008584001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05668t00001" mRNA complement(join(23873054..23873350,23873458..23873621, 23873911..23874253,23874530..23875033, 23875524..>23876108)) /locus_tag="TCM_014689" /product="Chromatin remodeling complex subunit, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008584001" /inference="similar to AA sequence:Phytozome:GSVIVT01008584001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc174t9; inference alignment:Newbler:10:TSA:cgbaB_g05668t00001" mRNA complement(join(23873063..23873350,23873458..23873483, 23874084..23874253,23874530..23875033,23875524..23876044, 23876166..23876420)) /locus_tag="TCM_014689" /product="Chromatin remodeling complex subunit, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008584001" /inference="similar to AA sequence:Phytozome:GSVIVT01008584001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc819t11_C1; inference alignment:Newbler:10:TSA:cgbaB_g05668t00001" CDS complement(join(23873153..23873350,23873458..23873621, 23873911..23873960,23874084..23874253,23874530..23875033, 23875524..23876044,23876166..23876346)) /locus_tag="TCM_014689" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Chromatin remodeling complex subunit, putative isoform 1" /protein_id="EOY22546.1" /db_xref="Phytozome:GSVIVT01008584001" /db_xref="TAIR:AT2G47620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFF6" /translation="MAIPFLPSINIANPESDPKRHKSKLAKDPGMENNTRHDPNPEST RPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINK YREDPSRRLTFTEIRKSLVGDVTLLHKVFIFLETWGLINFVSPPRPHEGSEKDDTVRV EDGAPNGVRVVATPNSLRPLSAPVVKGKSSDGGAGEGVLKLPPLASYSDVFGDLKRLR CGNCGDCDSEYYEYNKDHFVVCVKCFKSGNYGENKSMDDFNLKNGSGNSATNGAVWTE AETLLLLESVLKHGDDWDLVAQDVQTKSKLDCITKLIELPFGESLIDSVNGRANSSGP SMNMNSVKPVPVPSEHQENIRNEDQGPNLGHDDTNENEQNGDSENEEPPLKKKRTASI SDADSSLMKQVALISTMVGPQITAAAAEAAVAVLAEEMACPREIFDGDEINLTNGLPS PTSIGQPERAYHDEESEMKERASPSETQETSPKKNDVPLPLRIRAAVATGLGAAAAHA KLLAEHEEREIEHLVATIIEAQLKKLHSKIKHCEDAELLMKKEYAAIEDLREYIIGER INILRRTFTTGIPKLRVHTSVQSQTANLS" mRNA complement(join(23873284..23873350,23873458..23873960, 23874084..23874253,23874530..23875033,23875524..23876044, 23876166..23876420)) /locus_tag="TCM_014689" /product="Chromatin remodeling complex subunit, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008584001" /inference="similar to AA sequence:Phytozome:GSVIVT01008584001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc805t6; inference alignment:Newbler:10:TSA:cgbaB_g05668t00001" CDS complement(join(23873331..23873350,23873458..23873483, 23874084..23874253,23874530..23875033,23875524..23876044, 23876166..23876346)) /locus_tag="TCM_014689" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Chromatin remodeling complex subunit, putative isoform 4" /protein_id="EOY22549.1" /db_xref="Phytozome:GSVIVT01008584001" /db_xref="TAIR:AT2G47620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFF6" /translation="MAIPFLPSINIANPESDPKRHKSKLAKDPGMENNTRHDPNPEST RPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINK YREDPSRRLTFTEIRKSLVGDVTLLHKVFIFLETWGLINFVSPPRPHEGSEKDDTVRV EDGAPNGVRVVATPNSLRPLSAPVVKGKSSDGGAGEGVLKLPPLASYSDVFGDLKRLR CGNCGDCDSEYYEYNKDHFVVCVKCFKSGNYGENKSMDDFNLKNGSGNSATNGAVWTE AETLLLLESVLKHGDDWDLVAQDVQTKSKLDCITKLIELPFGESLIDSVNGRANSSGP SMNMNSVKPVPVPSEHQENIRNEDQGPNLGHDDTNENEQNGDSENEEPPLKKKRTASI SDADSSLMKQVALISTMVGPQITAAAAEAAVAVLAEEMACPREIFDGDEINLTNGLPS PTSIGQPESSCNHNRGTIKEIAL" mRNA complement(join(23873599..23873621,23873911..23874253, 23874530..23875033,23875524..23876044,23876166..23876420)) /locus_tag="TCM_014689" /product="Chromatin remodeling complex subunit, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008584001" /inference="similar to AA sequence:Phytozome:GSVIVT01008584001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc819t8; inference alignment:Newbler:10:TSA:cgbaB_g05668t00001" CDS complement(join(23873876..23873960,23874084..23874253, 23874530..23875033,23875524..23876044,23876166..23876346)) /locus_tag="TCM_014689" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Chromatin remodeling complex subunit, putative isoform 2" /protein_id="EOY22547.1" /db_xref="Phytozome:GSVIVT01008584001" /db_xref="TAIR:AT2G47620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFF6" /translation="MAIPFLPSINIANPESDPKRHKSKLAKDPGMENNTRHDPNPEST RPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINK YREDPSRRLTFTEIRKSLVGDVTLLHKVFIFLETWGLINFVSPPRPHEGSEKDDTVRV EDGAPNGVRVVATPNSLRPLSAPVVKGKSSDGGAGEGVLKLPPLASYSDVFGDLKRLR CGNCGDCDSEYYEYNKDHFVVCVKCFKSGNYGENKSMDDFNLKNGSGNSATNGAVWTE AETLLLLESVLKHGDDWDLVAQDVQTKSKLDCITKLIELPFGESLIDSVNGRANSSGP SMNMNSVKPVPVPSEHQENIRNEDQGPNLGHDDTNENEQNGDSENEEPPLKKKRTASI SDADSSLMKQVALISTMVGPQITAAAAEAAVAVLAEEMACPREIFDGDEINLTNGLPS PTSIGQPERAYHDEESEMKERASPSGIYTLRYSHAK" CDS complement(join(23874074..23874253,23874530..23875033, 23875524..23876044,23876166..23876346)) /locus_tag="TCM_014689" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Chromatin remodeling complex subunit, putative isoform 5" /protein_id="EOY22550.1" /db_xref="Phytozome:GSVIVT01008584001" /db_xref="TAIR:AT2G47620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFF6" /translation="MAIPFLPSINIANPESDPKRHKSKLAKDPGMENNTRHDPNPEST RPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINK YREDPSRRLTFTEIRKSLVGDVTLLHKVFIFLETWGLINFVSPPRPHEGSEKDDTVRV EDGAPNGVRVVATPNSLRPLSAPVVKGKSSDGGAGEGVLKLPPLASYSDVFGDLKRLR CGNCGDCDSEYYEYNKDHFVVCVKCFKSGNYGENKSMDDFNLKNGSGNSATNGAVWTE AETLLLLESVLKHGDDWDLVAQDVQTKSKLDCITKLIELPFGESLIDSVNGRANSSGP SMNMNSVKPVPVPSEHQENIRNEDQGPNLGHDDTNENEQNGDSENEEPPLKKKRTASI SDADSSLMKQVALISTMVGPQITAAAAEAAVAVLAEEMACPREIFDGDEINLTNGLPS PTSIGQPERLF" CDS complement(join(23874074..23874253,23874530..23875033, 23875524..>23876108)) /locus_tag="TCM_014689" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Chromatin remodeling complex subunit, putative isoform 3" /protein_id="EOY22548.1" /db_xref="Phytozome:GSVIVT01008584001" /db_xref="TAIR:AT2G47620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFF6" /translation="NLNSNPPSFFNLFPINFFFFVGWFAWNDIHETERQALKEFFEGS SISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLVGDVTLLHKVFIFLETWGLIN FVSPPRPHEGSEKDDTVRVEDGAPNGVRVVATPNSLRPLSAPVVKGKSSDGGAGEGVL KLPPLASYSDVFGDLKRLRCGNCGDCDSEYYEYNKDHFVVCVKCFKSGNYGENKSMDD FNLKNGSGNSATNGAVWTEAETLLLLESVLKHGDDWDLVAQDVQTKSKLDCITKLIEL PFGESLIDSVNGRANSSGPSMNMNSVKPVPVPSEHQENIRNEDQGPNLGHDDTNENEQ NGDSENEEPPLKKKRTASISDADSSLMKQVALISTMVGPQITAAAAEAAVAVLAEEMA CPREIFDGDEINLTNGLPSPTSIGQPERLF" mobile_element complement(23876660..23877100) /note="source:scaffold_7_CACTA_0795 2849 3300" /mobile_element_type="transposon:TIR/CACTA" gene 23876775..23878984 /locus_tag="TCM_014690" /note="dbxref CacaoGD:Thecc1EG014690" mRNA 23876775..23878984 /locus_tag="TCM_014690" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g032860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000355t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s10640.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1709t1" CDS 23877305..23878828 /locus_tag="TCM_014690" /note="paralog of Thecc1EG000355t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /protein_id="EOY22551.1" /db_xref="Phytozome:POPTR_0006s10640.1" /db_xref="TAIR:AT5G66520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD88" /translation="MLKVSASDRQLTTHLAAPSKDSKQPEKLTSNKPNHLQILKKCTH LIQFKQVHAQIIKTTLPQADTHLSKLIQALVGSAHLPYARLVLDQITEPSTFAFNTMI KGYGTNNLGDKGIDLYIQMRYRGLNPDNFTYPFLLKACNGLKQGKGVHSLVVKNKRFS SEIHFLTSLITFYCSVGDVESARLLFDRMPEKNVVTWTGIIKGYVKQKRYKEGIQLFY QMRNSGVEINELTLVCVLSACANLGALEIGKWVHEYTDRKKIFLNPKLGAALIDMYAK CGHIDKASQVFQTVPCKGVYVWNAMIGGLAMHGYGIEAIDRFMEMQGFGIKPDGITLI AVLSACSHSGLVVKGKEIFQSMRKVYEIEPTIKHYGCFVDLLCRAELLNEAYEIIINM PMEPNGVLWGTLLNACTATANIELAEAAMEQLMVLEPFNDGNYVLTSNIYAAKKRWDD VARIRKVLKHKQIVRNPGHSLIEVHNVVHEFMVGDGRHPCSEEIYDMLEKVAITLKE" gene complement(23878987..23881086) /locus_tag="TCM_014691" /note="dbxref CacaoGD:Thecc1EG014691" mRNA complement(join(23878987..23880219,23880967..23881086)) /locus_tag="TCM_014691" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma02g44200.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS complement(join(23879366..23880219,23880967..23881015)) /locus_tag="TCM_014691" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22552.1" /db_xref="Phytozome:Glyma02g44200.1" /translation="MMSMLFLKIFFTPKVSCMAMASPNESPKRGCPCPGDNLAGPDRL RSPRFAFNVPPSSPTFHYQDRPLTPPPMFRNAVLGEHRRRHFQNNNYTANSSTTTTSS HPKVQICLIGAVMFFSILTVIGIPIMLFYVFGPHSPSFSVEQVFFYYPIFYSSPTRFS SLFNITMKVNNPARHIGLFYEHDNSIVASYYGIRLCSGEIPPFFQPPKDEMLVQSPLT GLGVVLPDDVNQKLENDHKKERVPLTLSMMGMVRFKMGSVTSRALLKVSCEMVLDNLM TYTPNIISSSCDSAAGFWFPTIRN" mobile_element complement(23880835..23880928) /note="source:INTACT446_F218_scaffold_9-int 7451 7543" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(23881263..23884077) /locus_tag="TCM_014692" /note="dbxref CacaoGD:Thecc1EG014692" mRNA complement(join(23881263..23881728,23881818..23881910, 23881996..23882124,23882234..23882403,23883131..23883332, 23883425..23883472,23884070..23884077)) /locus_tag="TCM_014692" /product="Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein" /inference="alignment:exonerate- protein:2:ricco:29790.m000835" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017264t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008585001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5832t1" CDS complement(join(23881597..23881728,23881818..23881910, 23881996..23882124,23882234..23882403,23883131..23883332, 23883425..23883472,23884070..23884072)) /locus_tag="TCM_014692" /note="paralog of Thecc1EG017264t1" /codon_start=1 /product="Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein" /protein_id="EOY22553.1" /db_xref="Phytozome:GSVIVT01008585001" /db_xref="TAIR:AT3G62870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P49692" /translation="MGPKRGGKVAAPAKKKQEKVANPLFEKRPKQFGIGGALPPKKDL HRFVKWPKVVRIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKLLLKYRPEDKAA KKERLLKKAQAEAEGKAPESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVV WLPALCRKMEVPYCIVKGKSRLGSIVHKKTAAVLCLTTVKNEDKLEFSKILEAIKANF NDKYDEYRKKWGGGIMGSKSQARTKAKEKLLAKEAAQRMT" mobile_element 23885451..23885840 /note="source:scaffold_9_CACTA_0943 5591 5780" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23886469..23886620) /note="source:CACAO_Mutator_E714_scaffold_3 1574 1722" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(23886793..23886888) /note="source:CACAO_Mutator_E714_scaffold_3 1515 1584" /mobile_element_type="transposon:TIR/Mutator" mobile_element 23887958..23888079 /note="source:scaffold_4_CACTA_0483 12383 12516" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23889177..23889603) /note="source:CACAO_PIF_E119_scaffold_3 4238 4664" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23890950..23891019 /note="source:CACAO_PIF_E31_scaffold_2 543 612" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23891749..23891882 /note="source:CACAO_MITE66_scaffold_4 679 813" /mobile_element_type="transposon:TIR/MITE" gene 23892331..23898337 /locus_tag="TCM_014693" /note="dbxref CacaoGD:Thecc1EG014693" mRNA join(23892331..23893127,23893219..23893252, 23894074..23894153,23894234..23894293,23894460..23894573, 23894658..23894738,23894835..23894906,23896792..23897311, 23897494..23897591,23897681..23897711,23897790..23898027) /locus_tag="TCM_014693" /product="DEK domain-containing chromatin associated protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10420.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s11280.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04555t00001; inference alignment:Newbler:10:TSA:cgbaP2_g04555t00001" mRNA join(23892348..23893127,23893219..23893252, 23894074..23894153,23894234..23894293,23894460..23894573, 23894658..23894738,23894832..23894906,23896792..23897311, 23897494..23897591,23897681..23897711,23897790..23898337) /locus_tag="TCM_014693" /product="DEK domain-containing chromatin associated protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10420.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s11280.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5741t3; inference alignment:Newbler:10:TSA:cgbaP2_g04555t00001" mRNA join(23892348..23893127,23893219..23893252, 23894074..23894153,23894234..23894293,23894463..23894573, 23894658..23894738,23894832..23894906,23896792..23897311, 23897494..23897591,23897681..23897711,23897790..23898337) /locus_tag="TCM_014693" /product="DEK domain-containing chromatin associated protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10420.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s11280.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5741t1; inference alignment:Newbler:10:TSA:cgbaP2_g04555t00001" mRNA join(23892348..23893127,23893219..23893252, 23894074..23894153,23894234..23894293,23894463..23894573, 23894658..23894738,23894835..23894906,23896792..23897311, 23897494..23897591,23897681..23897711,23897790..23898337) /locus_tag="TCM_014693" /product="DEK domain-containing chromatin associated protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10420.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s11280.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5741t4; inference alignment:Newbler:10:TSA:cgbaP2_g04555t00001" CDS join(23892621..23893127,23893219..23893252, 23894074..23894153,23894234..23894293,23894460..23894573, 23894658..23894738,23894832..23894906,23896792..23897311, 23897494..23897591,23897681..23897711,23897790..23897959) /locus_tag="TCM_014693" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DEK domain-containing chromatin associated protein, putative isoform 3" /protein_id="EOY22556.1" /db_xref="Phytozome:POPTR_0015s11280.1" /db_xref="TAIR:AT3G48710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3V7" /translation="MATETLEEKKPEEEEEAAPVNAKEEVKEDKEKQEESKEVFDKQV SRESEEKKELDDKEGEKQEEKEEEKKEEKVEKAEETKEEEEKEEEGSKKSKGSSRKRS SRKEPTVSKKPSRESSENKKASQESAEKKEPVTPSSDRPTRERKVVERYSAPSVARSS SGKPLSIEKGRGTQLKDIPNVAFKLSKRKPDDNLQMLHMILFGKKAKPHGLKRNIGQF SGFVWAENEQEKQKSKVKEKLDKCVKEKLVDFCDLLNIPITRATVKKEEVSAKLLEFL ESPHATTDVLLADKEQQKGKKRKATPSRNISSGEASDTSAKKRRTSQGGEKRKHSPKA EEEDEDDDKVESPDTKGDSHEDNADTIPKEESDDEDTKSEEEDEPKKSTNKSTSKKIA KESPESKGKDKSTSGRKVTPAKSVKSPSKPSKRSSGSTAKQVSSDVDGTSGSKSKGSV SKKQKVEKESSKDGSFFTKDKVAGRKRTNKSPAKVSAKTQGKGKSAKKPKAEPSREEI HDVVVDILKEVDFNTATLSDILRQLGTHFDLDLMHRKAEVKDIITDVINNMSDEDEEG EESEENADTGGEAGKDGDGDDDD" CDS join(23892621..23893127,23893219..23893252, 23894074..23894153,23894234..23894293,23894460..23894573, 23894658..23894738,23894835..23894906,23896792..23897311, 23897494..23897591,23897681..23897711,23897790..23897959) /locus_tag="TCM_014693" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DEK domain-containing chromatin associated protein, putative isoform 1" /protein_id="EOY22554.1" /db_xref="Phytozome:POPTR_0015s11280.1" /db_xref="TAIR:AT3G48710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3V7" /translation="MATETLEEKKPEEEEEAAPVNAKEEVKEDKEKQEESKEVFDKQV SRESEEKKELDDKEGEKQEEKEEEKKEEKVEKAEETKEEEEKEEEGSKKSKGSSRKRS SRKEPTVSKKPSRESSENKKASQESAEKKEPVTPSSDRPTRERKVVERYSAPSVARSS SGKPLSIEKGRGTQLKDIPNVAFKLSKRKPDDNLQMLHMILFGKKAKPHGLKRNIGQF SGFVWAENEQEKQKSKVKEKLDKCVKEKLVDFCDLLNIPITRATVKKEEVSAKLLEFL ESPHATTDVLLADKEQKGKKRKATPSRNISSGEASDTSAKKRRTSQGGEKRKHSPKAE EEDEDDDKVESPDTKGDSHEDNADTIPKEESDDEDTKSEEEDEPKKSTNKSTSKKIAK ESPESKGKDKSTSGRKVTPAKSVKSPSKPSKRSSGSTAKQVSSDVDGTSGSKSKGSVS KKQKVEKESSKDGSFFTKDKVAGRKRTNKSPAKVSAKTQGKGKSAKKPKAEPSREEIH DVVVDILKEVDFNTATLSDILRQLGTHFDLDLMHRKAEVKDIITDVINNMSDEDEEGE ESEENADTGGEAGKDGDGDDDD" CDS join(23892621..23893127,23893219..23893252, 23894074..23894153,23894234..23894293,23894463..23894573, 23894658..23894738,23894832..23894906,23896792..23897311, 23897494..23897591,23897681..23897711,23897790..23897959) /locus_tag="TCM_014693" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DEK domain-containing chromatin associated protein, putative isoform 2" /protein_id="EOY22555.1" /db_xref="Phytozome:POPTR_0015s11280.1" /db_xref="TAIR:AT3G48710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3V7" /translation="MATETLEEKKPEEEEEAAPVNAKEEVKEDKEKQEESKEVFDKQV SRESEEKKELDDKEGEKQEEKEEEKKEEKVEKAEETKEEEEKEEEGSKKSKGSSRKRS SRKEPTVSKKPSRESSENKKASQESAEKKEPVTPSSDRPTRERKVVERYSAPSVARSS SGKPLSIEKGRGTQLKDIPNVAFKLSKRKPDDNLQMLHMILFGKKAKPHGLKRNIGQF SGFVWAENEEKQKSKVKEKLDKCVKEKLVDFCDLLNIPITRATVKKEEVSAKLLEFLE SPHATTDVLLADKEQQKGKKRKATPSRNISSGEASDTSAKKRRTSQGGEKRKHSPKAE EEDEDDDKVESPDTKGDSHEDNADTIPKEESDDEDTKSEEEDEPKKSTNKSTSKKIAK ESPESKGKDKSTSGRKVTPAKSVKSPSKPSKRSSGSTAKQVSSDVDGTSGSKSKGSVS KKQKVEKESSKDGSFFTKDKVAGRKRTNKSPAKVSAKTQGKGKSAKKPKAEPSREEIH DVVVDILKEVDFNTATLSDILRQLGTHFDLDLMHRKAEVKDIITDVINNMSDEDEEGE ESEENADTGGEAGKDGDGDDDD" CDS join(23892621..23893127,23893219..23893252, 23894074..23894153,23894234..23894293,23894463..23894573, 23894658..23894738,23894835..23894906,23896792..23897311, 23897494..23897591,23897681..23897711,23897790..23897959) /locus_tag="TCM_014693" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="DEK domain-containing chromatin associated protein, putative isoform 4" /protein_id="EOY22557.1" /db_xref="Phytozome:POPTR_0015s11280.1" /db_xref="TAIR:AT3G48710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3V7" /translation="MATETLEEKKPEEEEEAAPVNAKEEVKEDKEKQEESKEVFDKQV SRESEEKKELDDKEGEKQEEKEEEKKEEKVEKAEETKEEEEKEEEGSKKSKGSSRKRS SRKEPTVSKKPSRESSENKKASQESAEKKEPVTPSSDRPTRERKVVERYSAPSVARSS SGKPLSIEKGRGTQLKDIPNVAFKLSKRKPDDNLQMLHMILFGKKAKPHGLKRNIGQF SGFVWAENEEKQKSKVKEKLDKCVKEKLVDFCDLLNIPITRATVKKEEVSAKLLEFLE SPHATTDVLLADKEQKGKKRKATPSRNISSGEASDTSAKKRRTSQGGEKRKHSPKAEE EDEDDDKVESPDTKGDSHEDNADTIPKEESDDEDTKSEEEDEPKKSTNKSTSKKIAKE SPESKGKDKSTSGRKVTPAKSVKSPSKPSKRSSGSTAKQVSSDVDGTSGSKSKGSVSK KQKVEKESSKDGSFFTKDKVAGRKRTNKSPAKVSAKTQGKGKSAKKPKAEPSREEIHD VVVDILKEVDFNTATLSDILRQLGTHFDLDLMHRKAEVKDIITDVINNMSDEDEEGEE SEENADTGGEAGKDGDGDDDD" gene 23898423..23911716 /locus_tag="TCM_014694" /note="dbxref CacaoGD:Thecc1EG014694" mRNA join(23898423..23898906,23899735..23899817, 23900640..23901106,23901601..23902825,23911686..23911716) /locus_tag="TCM_014694" /product="HXXXD-type acyl-transferase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400054926.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017267t1" /inference="similar to AA sequence:ricco:30147.m014455" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3546t1" CDS join(23898758..23898906,23899735..23899817, 23900640..23901106,23901601..23902461) /locus_tag="TCM_014694" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014455; paralog of Thecc1EG017267t1" /codon_start=1 /product="HXXXD-type acyl-transferase family protein, putative isoform 1" /protein_id="EOY22558.1" /db_xref="TAIR:AT5G41040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94CD1" /translation="MLITNKSNANLTRNGKSGVIFSSRQLVTKDWSNRFSYKKDLMFA VAYQEIFIIWERLFIKETCIIDDFGRAAWVKDGGLVSEEHIQMADVSNGTFEFSVKQG EPSRVLPAEETEKGLYYLSNLDQNIAVIIRTIYFFRSESKGNEDAVEVVKNGLSKILV YHYPLAGRLTISSEGKLIVDCTEEGAVFVEAEANCGLEEIGDITKPDPATLGKLVYEI PGAQNLLEIPLLVIQVTKFKCGGFAIGMSMNHCMLDGISAMEFMNGWGEVARGLPLKI PPFLDRGILKARIPPKMEFSHHEFDEIEDISNTSKLYEGEEMLYRSFLFDPDKLRQLK EKATEDGVVSQCTTFEVLAGFVWRARCQALNLLPEQLTKLLFAVDGRKRFIPPLPQGY AGNGIVLTNSIATAGELIEKPLSFAVGLIQQAVGLATDSYMRSAIDYFEVTRARPSLA GTVLLTTWAKLSFYSIDFGWGETISSGPVALPEKPVILFLPSQKDKKSINLLLGLPAS AMNIFEELMQI" mRNA join(23900165..23900277,23900359..23900411, 23900630..23901106,23901601..23902981) /locus_tag="TCM_014694" /product="HXXXD-type acyl-transferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400054926.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017267t1" /inference="similar to AA sequence:ricco:30147.m014455" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc4094t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3546t1" CDS join(23900666..23901106,23901601..23902461) /locus_tag="TCM_014694" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014455; paralog of Thecc1EG017267t1" /codon_start=1 /product="HXXXD-type acyl-transferase family protein isoform 2" /protein_id="EOY22559.1" /db_xref="TAIR:AT5G41040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94CD1" /translation="MADVSNGTFEFSVKQGEPSRVLPAEETEKGLYYLSNLDQNIAVI IRTIYFFRSESKGNEDAVEVVKNGLSKILVYHYPLAGRLTISSEGKLIVDCTEEGAVF VEAEANCGLEEIGDITKPDPATLGKLVYEIPGAQNLLEIPLLVIQVTKFKCGGFAIGM SMNHCMLDGISAMEFMNGWGEVARGLPLKIPPFLDRGILKARIPPKMEFSHHEFDEIE DISNTSKLYEGEEMLYRSFLFDPDKLRQLKEKATEDGVVSQCTTFEVLAGFVWRARCQ ALNLLPEQLTKLLFAVDGRKRFIPPLPQGYAGNGIVLTNSIATAGELIEKPLSFAVGL IQQAVGLATDSYMRSAIDYFEVTRARPSLAGTVLLTTWAKLSFYSIDFGWGETISSGP VALPEKPVILFLPSQKDKKSINLLLGLPASAMNIFEELMQI" mobile_element complement(23903934..23904043) /note="source:scaffold_4_CACTA_0505 16537 16644" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23904396..23904462 /note="source:CACAO_M_S_E68196_F233_scaffold_6 1294 1363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23904926..23905241 /note="source:CACAO_hAT_E1468_scaffold_3 1 940" /mobile_element_type="transposon:TIR/hAT" mobile_element 23905242..23905656 /note="source:scaffold_3_CACTA_0398 3747 4163" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23905657..23905731 /note="source:CACAO_hAT_E1468_scaffold_3 941 1169" /mobile_element_type="transposon:TIR/hAT" gene 23906095..23911485 /locus_tag="TCM_014695" /note="dbxref CacaoGD:Thecc1EG014695" mRNA join(23906095..23906712,23910655..23910748, 23911035..23911485) /locus_tag="TCM_014695" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is ortholog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.58 coverage" mobile_element 23906747..23907692 /note="source:scaffold_4_CACTA_0511 12877 13838" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23908155..23908415 /note="source:scaffold_1_CACTA_0005 2562 2794" /mobile_element_type="transposon:TIR/CACTA" CDS join(23910656..23910748,23911035..23911295) /locus_tag="TCM_014695" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22560.1" /translation="MSRLQGPNALKRKRPGAASDSLTEHERIVHDVATLEGVTDAIER STLSQIELSKQQIEEIVKALVSDYEVMETEKSWNSLLRFRLGKFVINALVKEVVEGNK RQELLLPFLVEFVHR" mobile_element complement(23913308..23915224) /note="source:scaffold_4_CACTA_0490 7 1950" /mobile_element_type="transposon:TIR/CACTA" gene complement(23915085..23917409) /locus_tag="TCM_014696" /note="dbxref CacaoGD:Thecc1EG014696" mRNA complement(join(23915085..23916274,23917346..23917409)) /locus_tag="TCM_014696" /product="Calmodulin binding protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014453" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008557t1" /inference="similar to AA sequence:ricco:30147.m014454" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc5104t1" CDS complement(23915621..23916163) /locus_tag="TCM_014696" /note="dbxref ricco:30147.m014454; paralog of Thecc1EG008557t1" /codon_start=1 /product="Calmodulin binding protein, putative" /protein_id="EOY22561.1" /db_xref="TAIR:AT5G50760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAA9" /translation="MDVVKMKWKKNVLFRAWERCWSLGTGGKKSSGTSCDALRKSKSW HSTTTRSSSLEEDEGKKRRQVAPEGCFSVYVGPQRQRFVVKTEFANHPLFKMLLEDAE LEYGFSSEGPLLLPCDVDLFYKVLAEMDGGKEISPVRGFAYSPLILCSPSRRQSSSIN KGYGSYKLLTPSRLLKLNSY" gene complement(23920176..23921608) /locus_tag="TCM_014697" /note="dbxref CacaoGD:Thecc1EG014697" mRNA complement(join(23920176..23920389,23920814..23920859, 23920939..23921031,23921116..23921268,23921485..23921608)) /locus_tag="TCM_014697" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3553t1" CDS complement(join(23920337..23920389,23920814..23920859, 23920939..23921031,23921116..23921268,23921485..23921568)) /locus_tag="TCM_014697" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22562.1" /translation="MANGWISQVSRIKVEPKQKRNKLSRWHEVLYRVLDMAGARNRIH PYYQQWWPVVAPRPPPTATATAPQPPPLLALSHDKDLLVIKLVGLSYSSVLSWLYGEK KTLRSQDESQCCYYGYVFLAFVLLLDMDETNMAKDLKSLV" mobile_element 23923341..23923474 /note="source:CACAO_PIF_E119_scaffold_3 1745 1878" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23926773..23926833) /note="source:scaffold_1_CACTA_0008 1387 1447" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23926809..23927026) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17546 17765" /mobile_element_type="retrotransposon:LTR/Copia" gene 23928073..23938244 /locus_tag="TCM_014698" /note="dbxref CacaoGD:Thecc1EG014698" mRNA join(23928073..23928574,23928775..23929271, 23930121..23930195,23930327..23930361,23930448..23930526, 23930911..23931003,23931100..23931184,23931999..23932074, 23932789..23932917,23933251..23933349,23933459..23933560, 23934270..23934431,23934522..23934617,23935222..23935273, 23935347..23935458,23935586..23935659,23935791..23936161, 23936655..23936749,23936844..23936931,23937244..23937366, 23937648..23937835,23937923..23938204) /locus_tag="TCM_014698" /product="MORC family CW-type zinc finger protein 4, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014452" /inference="similar to AA sequence:ricco:30147.m014452" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5615t4" mRNA join(23928474..23928574,23928775..23929271, 23930121..23930195,23930327..23930361,23930448..23930526, 23930911..23931003,23931100..23931184,23931999..23932074, 23932789..23932917,23933251..23933349,23933459..23933560, 23934270..23934431,23934522..23934617,23935222..23935273, 23935347..23935458,23935586..23935659,23935791..23936169, 23936653..23936749,23936844..23936931,23937244..23937366, 23937648..23937835,23937923..23938244) /locus_tag="TCM_014698" /product="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014452" /inference="similar to AA sequence:Phytozome:GSVIVT01008587001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc697t8; inference alignment:Newbler:10:TSA:cgbaB_g05018t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5615t4" mRNA join(23928474..23928574,23928775..23929271, 23930121..23930195,23930327..23930361,23930448..23930526, 23930911..23931003,23931100..23931184,23931999..23932074, 23932789..23932917,23933251..23933349,23933459..23933560, 23934270..23934431,23934522..23934617,23935222..23935273, 23935347..23935458,23935586..23935659,23935791..23936161, 23936652..23936749,23936844..23936931,23937244..23937366, 23937648..23938244) /locus_tag="TCM_014698" /product="MORC family CW-type zinc finger protein 4, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014452" /inference="similar to AA sequence:Phytozome:GSVIVT01008587001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc697t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5615t4; inference alignment:Newbler:10:TSA:cgbaB_g05018t00001" mRNA join(23928474..23928574,23928775..23929271, 23930121..23930195,23930327..23930361,23930448..23930526, 23930911..23931003,23931100..23931184,23931999..23932074, 23932789..23932917,23933251..23933349,23933459..23933560, 23934270..23934427,23935227..23935273,23935347..23935458, 23935586..23935659,23935791..23936169,23936653..23936749, 23936844..23936931,23937244..23937366,23937648..23938244) /locus_tag="TCM_014698" /product="MORC family CW-type zinc finger protein 4, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m014452" /inference="similar to AA sequence:Phytozome:GSVIVT01008587001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc697t1; inference alignment:Newbler:10:TSA:cgbaB_g05018t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5615t4" CDS join(23928809..23929271,23930121..23930195, 23930327..23930361,23930448..23930526,23930911..23931003, 23931100..23931184,23931999..23932074,23932789..23932917, 23933251..23933349,23933459..23933560,23934270..23934431, 23934522..23934617,23935222..23935273,23935347..23935458, 23935586..23935659,23935791..23936161,23936652..23936749, 23936844..23936931,23937244..23937366,23937648..23937722) /locus_tag="TCM_014698" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="MORC family CW-type zinc finger protein 4, putative isoform 3" /protein_id="EOY22565.1" /db_xref="Phytozome:GSVIVT01008587001" /db_xref="TAIR:AT4G24970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3W1" /translation="MDVRVKEEVMETLSAQSRKTNGVVREIPASVIELSSSSSESDSS DDSDDPDENDNANGAVAGEEALEGIALKKRKVNDVDFVLPLGFLAPLPPDDPAPVPLA SDMAVVEVPETEGPPEPAASKSLSSSSSVLCKQFWKAGDYDGTPPADWDLSSGGMDHV RVHPKFLHSNATSHKWALGAFAELLDNSLDEVCSGATYVNIDMLKSKKDGNNMLLIED NGGGMDPDKMRQCMSLGYSAKSKVANTIGQYGNGFKTSTMRLGADVIVFSRCCGKDGK HPTQSIGLLSYTFLTSTGKEDIVVPMLDYEWQQREWKKIIRSTVSDWDRNVETVVQWS PFSSATDLLRQFNLMKDHGTRIIIYNLWEDDQGLSELDFHADPHDIQLRGVNRDEKNI QMAKECPNSRHFLTYRHSLRSYASILYLRLHPNFRIILRGKDVEHHNIVNDMMLTEMV TYRPNPSAEGAPKDLNLAAVVTIGFVKDAKHHVDVQGFNVYHKNRLIKPFWRVWNAAG SDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLVQMQKTYWSTNCHKIGYAPRR NKKNIDQSLGRDSSPDHDSQRPTRSNKKSTTSSSKRLSSDSDKLCSPSNWNKRGKECQ KFPETEDGGHVLRKGDKRKKTPIDNSTKDLTKSGKSLRSIEPSSPSTENVSDDVCEVL PERLANGSSQKFVTRTKSKQECGLNDTELPHSETNLHALELLKQENCELKKRLEKYEG KRQCELLNDLQQERNCRESLEIELKGAQEKIEQLNFEQESLINIFSEERDRRDKEEEN LRKKLKDASNTIQELVDKVKLLEMMKSSNF" CDS join(23928809..23929271,23930121..23930195, 23930327..23930361,23930448..23930526,23930911..23931003, 23931100..23931184,23931999..23932074,23932789..23932917, 23933251..23933349,23933459..23933560,23934270..23934431, 23934522..23934617,23935222..23935273,23935347..23935458, 23935586..23935659,23935791..23936161,23936655..23936749, 23936844..23936931,23937244..23937366,23937648..23937722) /locus_tag="TCM_014698" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014452" /codon_start=1 /product="MORC family CW-type zinc finger protein 4, putative isoform 1" /protein_id="EOY22563.1" /db_xref="TAIR:AT4G24970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3W1" /translation="MDVRVKEEVMETLSAQSRKTNGVVREIPASVIELSSSSSESDSS DDSDDPDENDNANGAVAGEEALEGIALKKRKVNDVDFVLPLGFLAPLPPDDPAPVPLA SDMAVVEVPETEGPPEPAASKSLSSSSSVLCKQFWKAGDYDGTPPADWDLSSGGMDHV RVHPKFLHSNATSHKWALGAFAELLDNSLDEVCSGATYVNIDMLKSKKDGNNMLLIED NGGGMDPDKMRQCMSLGYSAKSKVANTIGQYGNGFKTSTMRLGADVIVFSRCCGKDGK HPTQSIGLLSYTFLTSTGKEDIVVPMLDYEWQQREWKKIIRSTVSDWDRNVETVVQWS PFSSATDLLRQFNLMKDHGTRIIIYNLWEDDQGLSELDFHADPHDIQLRGVNRDEKNI QMAKECPNSRHFLTYRHSLRSYASILYLRLHPNFRIILRGKDVEHHNIVNDMMLTEMV TYRPNPSAEGAPKDLNLAAVVTIGFVKDAKHHVDVQGFNVYHKNRLIKPFWRVWNAAG SDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLVQMQKTYWSTNCHKIGYAPRR NKKNIDQSLGRDSSPDHDSQRPTRSNKKSTTSSSKRLSSDSDKLCSPSNWNKRGKECQ KFPETEDGGHVLRKGDKRKKTPIDNSTKDLTKSGKSLRSIEPSSPSTENVSDDVCEVL PERLANGSSQKFVTRTKSKECGLNDTELPHSETNLHALELLKQENCELKKRLEKYEGK RQCELLNDLQQERNCRESLEIELKGAQEKIEQLNFEQESLINIFSEERDRRDKEEENL RKKLKDASNTIQELVDKVKLLEMMKSSNF" CDS join(23928809..23929271,23930121..23930195, 23930327..23930361,23930448..23930526,23930911..23931003, 23931100..23931184,23931999..23932074,23932789..23932917, 23933251..23933349,23933459..23933560,23934270..23934431, 23934522..23934617,23935222..23935273,23935347..23935458, 23935586..23935659,23935791..23936169,23936653..23936668) /locus_tag="TCM_014698" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein, putative isoform 2" /protein_id="EOY22564.1" /db_xref="Phytozome:GSVIVT01008587001" /db_xref="TAIR:AT4G24970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3W1" /translation="MDVRVKEEVMETLSAQSRKTNGVVREIPASVIELSSSSSESDSS DDSDDPDENDNANGAVAGEEALEGIALKKRKVNDVDFVLPLGFLAPLPPDDPAPVPLA SDMAVVEVPETEGPPEPAASKSLSSSSSVLCKQFWKAGDYDGTPPADWDLSSGGMDHV RVHPKFLHSNATSHKWALGAFAELLDNSLDEVCSGATYVNIDMLKSKKDGNNMLLIED NGGGMDPDKMRQCMSLGYSAKSKVANTIGQYGNGFKTSTMRLGADVIVFSRCCGKDGK HPTQSIGLLSYTFLTSTGKEDIVVPMLDYEWQQREWKKIIRSTVSDWDRNVETVVQWS PFSSATDLLRQFNLMKDHGTRIIIYNLWEDDQGLSELDFHADPHDIQLRGVNRDEKNI QMAKECPNSRHFLTYRHSLRSYASILYLRLHPNFRIILRGKDVEHHNIVNDMMLTEMV TYRPNPSAEGAPKDLNLAAVVTIGFVKDAKHHVDVQGFNVYHKNRLIKPFWRVWNAAG SDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLVQMQKTYWSTNCHKIGYAPRR NKKNIDQSLGRDSSPDHDSQRPTRSNKKSTTSSSKRLSSDSDKLCSPSNWNKRGKECQ KFPETEDGGHVLRKGDKRKKTPIDNSTKDLTKSGKSLRSIEPSSPSTENVSDDVCEVL PERLANGSSQKFVTRTKSKVVLGVWS" CDS join(23928809..23929271,23930121..23930195, 23930327..23930361,23930448..23930526,23930911..23931003, 23931100..23931184,23931999..23932074,23932789..23932917, 23933251..23933349,23933459..23933560,23934270..23934427, 23935227..23935273,23935347..23935458,23935586..23935659, 23935791..23936169,23936653..23936668) /locus_tag="TCM_014698" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="MORC family CW-type zinc finger protein 4, putative isoform 4" /protein_id="EOY22566.1" /db_xref="Phytozome:GSVIVT01008587001" /db_xref="TAIR:AT4G24970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3W1" /translation="MDVRVKEEVMETLSAQSRKTNGVVREIPASVIELSSSSSESDSS DDSDDPDENDNANGAVAGEEALEGIALKKRKVNDVDFVLPLGFLAPLPPDDPAPVPLA SDMAVVEVPETEGPPEPAASKSLSSSSSVLCKQFWKAGDYDGTPPADWDLSSGGMDHV RVHPKFLHSNATSHKWALGAFAELLDNSLDEVCSGATYVNIDMLKSKKDGNNMLLIED NGGGMDPDKMRQCMSLGYSAKSKVANTIGQYGNGFKTSTMRLGADVIVFSRCCGKDGK HPTQSIGLLSYTFLTSTGKEDIVVPMLDYEWQQREWKKIIRSTVSDWDRNVETVVQWS PFSSATDLLRQFNLMKDHGTRIIIYNLWEDDQGLSELDFHADPHDIQLRGVNRDEKNI QMAKECPNSRHFLTYRHSLRSYASILYLRLHPNFRIILRGKDVEHHNIVNDMMLTEMV TYRPNPSAEGAPKDFWRVWNAAGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEA RLVQMQKTYWSTNCHKIGYAPRRNKKNIDQSLGRDSSPDHDSQRPTRSNKKSTTSSSK RLSSDSDKLCSPSNWNKRGKECQKFPETEDGGHVLRKGDKRKKTPIDNSTKDLTKSGK SLRSIEPSSPSTENVSDDVCEVLPERLANGSSQKFVTRTKSKVVLGVWS" gene complement(23938305..23939278) /locus_tag="TCM_014699" /note="dbxref CacaoGD:Thecc1EG014699" mRNA complement(join(23938305..23938577,23938677..23939278)) /locus_tag="TCM_014699" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(23938527..23938577,23938677..23938871)) /locus_tag="TCM_014699" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22567.1" /translation="MGHTVSSTAYKYIAVKVGGVVLELAWTTHKDTLVSSKHPTERAC GLPLANTLVAAAAAASSPFNQTALGREDHGCDLRAVN" gene 23941006..23943369 /locus_tag="TCM_014700" /note="dbxref CacaoGD:Thecc1EG014700" mRNA join(23941006..23941312,23941575..23941679, 23942510..23943369) /locus_tag="TCM_014700" /product="Tapetum determinant 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400054945" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030412t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10470.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2254t1" CDS join(23941234..23941312,23941575..23941679, 23942510..23942853) /locus_tag="TCM_014700" /note="paralog of Thecc1EG030412t1" /codon_start=1 /product="Tapetum determinant 1" /protein_id="EOY22568.1" /db_xref="Phytozome:POPTR_0012s10470.1" /db_xref="TAIR:AT4G24972.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3W2" /translation="MNRRFLLVLSSFSFAVLFLFLVALFSGQGKNISSSFGLKLLRLR IKQWDNTLSTPHRKLLRGMAVEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEI VNVCVTGCDISGIHLNCGWFSSARLINPKIFKRIRYNDCLVNDGKPLVNGGTLSFQYA NTFLYPLSVSRVVCS" gene 23945034..23948163 /locus_tag="TCM_014701" /note="dbxref CacaoGD:Thecc1EG014701" mRNA join(23945034..23945557,23946455..23946628, 23946980..23948163) /locus_tag="TCM_014701" /product="Glutamate-1-semialdehyde 2,1-aminomutase 2" /inference="alignment:exonerate- protein:2:ricco:29728.m000832" /inference="similar to AA sequence:ricco:29728.m000832" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8845t1" CDS join(23945378..23945557,23946455..23946628, 23946980..23948047) /locus_tag="TCM_014701" /note="dbxref ricco:29728.m000832" /codon_start=1 /product="Glutamate-1-semialdehyde 2,1-aminomutase 2" /protein_id="EOY22569.1" /db_xref="TAIR:AT3G48730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42799" /translation="MAASISGVGVGLGLSCSTKLSKTLPSSRSSGFRVKMTVSVEDKK KNYTLQKSEEAFDAAKNLMPGGVNSPVRAFKSVGGQPIVMDSVKGSHMWDIDGNEYID YVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFV NSGTEACMGVLRLARAFTGREKLIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPR AATFETLTAPFNDISAVENLFNSNKGELAAIILEPVVGNSGFIPPKPDFLEAIHRLTK ENGALLIFDEVMTGFRLSYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRKEIMEMV APAGPMYQAGTLSGNPLAMTAGIQTLKRLKEPGTYEYLDKITGELVQGIIDAGKKTGH AICGGYISGMFGFFFTEGPVYNFDDAKKSDTAKFARFYRGMLEEGVYFAPSQFEAGFT SLAHSSEDIQKTIAAAEKVLSMI" gene complement(23948287..23950932) /locus_tag="TCM_014702" /note="dbxref CacaoGD:Thecc1EG014702" mRNA complement(join(23948287..23948790,23949495..23949665, 23950500..23950762,23950854..23950932)) /locus_tag="TCM_014702" /product="Ubiquitin family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014704t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s10490.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00146t00001" CDS complement(join(23948735..23948790,23949495..23949665, 23950500..23950629)) /locus_tag="TCM_014702" /note="paralog of Thecc1EG014704t2" /codon_start=1 /product="Ubiquitin family protein" /protein_id="EOY22570.1" /db_xref="Phytozome:POPTR_0012s10490.1" /db_xref="TAIR:AT4G24990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SW27" /translation="MPEEDLVDIKFRLYDGSDIGPFRYSATSTVDMLKQRIVSDWPKG KTIIPKAVNEVKLISSGKILENSKTVGQCKVPFGEVAGGVIIMHVVVQPSLAKTKTEK KIDDSPRKIVCSCSIL" gene 23951092..23953808 /locus_tag="TCM_014703" /note="dbxref CacaoGD:Thecc1EG014703" mRNA join(23951092..23951317,23951406..23951448, 23951561..23951638,23951881..23951953,23952267..23952354, 23952566..23952610,23952767..23952849,23953262..23953327, 23953410..23953808) /locus_tag="TCM_014703" /product="Pseudouridine synthase family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014705t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11340.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01091t00002" CDS join(23951188..23951317,23951406..23951448, 23951561..23951638,23951881..23951953,23952267..23952354, 23952566..23952610,23952767..23952849,23953262..23953327, 23953410..23953442) /locus_tag="TCM_014703" /note="paralog of Thecc1EG014705t1" /codon_start=1 /product="Pseudouridine synthase family protein" /protein_id="EOY22571.1" /db_xref="Phytozome:POPTR_0015s11340.1" /db_xref="TAIR:AT5G51140.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU60" /translation="MKRTRGKEGDEEEKEEEKTKKKMGIVWQTTAHPAHKDDYIFHNG CATYDRATSSSYLMLINDGREKQSWICSLKNLEADQMITLLVLSNVDVYKLMERIYLF HTKLNDECPVMAWDVPILQNEPDVLTVCKPASVPVLLGILQAEHGLAPLYPIHRLDRL VSVLLIVAKNPAKADIFRQHIEAGLVQKQYVAKVIGVFPECECIDDQMQVHS" gene complement(23954417..23956814) /locus_tag="TCM_014704" /note="dbxref CacaoGD:Thecc1EG014704" mRNA complement(join(23954417..23954614,23955323..23955493, 23956333..23956569,23956684..23956814)) /locus_tag="TCM_014704" /product="Ubiquitin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10490.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014702t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10490.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03114t00002; inference alignment:Newbler:10:TSA:cgbaB_g03114t00002" mRNA complement(join(23954417..23954614,23955323..23955493, 23956333..23956595,23956684..23956814)) /locus_tag="TCM_014704" /product="Ubiquitin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10490.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014702t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10490.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03114t00001; alternateUTRof:Thecc1EG014704t1; inference alignment:Newbler:10:TSA:cgbaB_g03114t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8861t1" CDS complement(join(23954559..23954614,23955323..23955493, 23956333..23956462)) /locus_tag="TCM_014704" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014702t1" /codon_start=1 /product="Ubiquitin family protein isoform 1" /protein_id="EOY22572.1" /db_xref="Phytozome:POPTR_0012s10490.1" /db_xref="TAIR:AT4G24990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SW27" /translation="MPEEDLVDIKFRLYDGSDIGPFRYSATSTVDMLKQRIVSDWPKG KTIIPKAVNEVKLISSGKILENSKTVGQCKVPFGEVAGAVIIMHVVVQPSLSKTKTEK KIDDSPRKIVCSCSIL" CDS complement(join(23954559..23954614,23955323..23955493, 23956333..23956462)) /locus_tag="TCM_014704" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014702t1" /codon_start=1 /product="Ubiquitin family protein isoform 1" /protein_id="EOY22573.1" /db_xref="Phytozome:POPTR_0012s10490.1" /db_xref="TAIR:AT4G24990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SW27" /translation="MPEEDLVDIKFRLYDGSDIGPFRYSATSTVDMLKQRIVSDWPKG KTIIPKAVNEVKLISSGKILENSKTVGQCKVPFGEVAGAVIIMHVVVQPSLSKTKTEK KIDDSPRKIVCSCSIL" gene 23956982..23965365 /locus_tag="TCM_014705" /note="dbxref CacaoGD:Thecc1EG014705" mRNA join(23956982..23957185,23957282..23957325, 23957452..23957529,23957769..23957869,23958153..23958240, 23958438..23958516,23958635..23958717,23959112..23959177, 23960753..23960809,23961437..23961562,23962025..23962257, 23964421..23965013) /locus_tag="TCM_014705" /product="Pseudouridine synthase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008591001" /inference="similar to AA sequence:Phytozome:POPTR_0015s11340.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5695t4; inference alignment:Newbler:10:TSA:cgbaB_g02706t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc634t26" mRNA join(23957012..23957185,23957282..23957325, 23957452..23957529,23957769..23957869,23958153..23958240, 23958438..23958516,23958635..23958717,23959112..23959177, 23960753..23960809,23960911..23960946,23961270..23961323, 23961437..23961562,23962025..23962257,23964421..23965365) /locus_tag="TCM_014705" /product="Pseudouridine synthase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008591001" /inference="similar to AA sequence:Phytozome:POPTR_0015s11340.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02706t00001" CDS join(23957053..23957185,23957282..23957325, 23957452..23957529,23957769..23957869,23958153..23958240, 23958438..23958516,23958635..23958717,23959112..23959177, 23960753..23960809,23960911..23960946,23961270..23961323, 23961437..23961562,23962025..23962257,23964421..23964523) /locus_tag="TCM_014705" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pseudouridine synthase family protein isoform 1" /protein_id="EOY22574.1" /db_xref="Phytozome:POPTR_0015s11340.1" /db_xref="TAIR:AT5G51140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU60" /translation="MKRKRGKEGGEEEEKEEEKNKRKMDIVWQTPAHPAHKDDYIFHN GKRYVRPYYFEFVSHVNKRWEGKTIVDLFTQEFRGRPNDYYVSAVKCGRIQVDGENIP VSYKVKRCQKISHFVHRHEPPVMAWDVAILQNEPDVLTVCKPASVPVHPCGQYRKNTV LGILQAEHGLSPLYPIHRLDRLVSGLLIVAKNPAKADIFRQHIEAGLVQKQYVAKVIG VFPECEQVVDANVDYNAREGRSTAEKRKTRRKMRSVVVIHKSLLCLLCRDFSFSKVGI SNGDTTLKGKVACTKFTRISTNGIHSIVLCEPTTGRTHQIRVHLQCTGHPIANDMLYL SDNVVDRSTLGMTADRAAALSCSCPVTSCENHNEEYKVSSEDFSIDPMCSHCPNLAPN GYNGHEEGLWLHCVRYSGPGWVYECPYPDWASLS" CDS join(23957053..23957185,23957282..23957325, 23957452..23957529,23957769..23957869,23958153..23958240, 23958438..23958516,23958635..23958717,23959112..23959177, 23960753..23960809,23961437..23961562,23962025..23962257, 23964421..23964523) /locus_tag="TCM_014705" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pseudouridine synthase family protein isoform 2" /protein_id="EOY22575.1" /db_xref="Phytozome:POPTR_0015s11340.1" /db_xref="TAIR:AT5G51140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU60" /translation="MKRKRGKEGGEEEEKEEEKNKRKMDIVWQTPAHPAHKDDYIFHN GKRYVRPYYFEFVSHVNKRWEGKTIVDLFTQEFRGRPNDYYVSAVKCGRIQVDGENIP VSYKVKRCQKISHFVHRHEPPVMAWDVAILQNEPDVLTVCKPASVPVHPCGQYRKNTV LGILQAEHGLSPLYPIHRLDRLVSGLLIVAKNPAKADIFRQHIEAGLVQKQYVAKVIG VFPECEQVVDANVDYNAREGRSTAEVGISNGDTTLKGKVACTKFTRISTNGIHSIVLC EPTTGRTHQIRVHLQCTGHPIANDMLYLSDNVVDRSTLGMTADRAAALSCSCPVTSCE NHNEEYKVSSEDFSIDPMCSHCPNLAPNGYNGHEEGLWLHCVRYSGPGWVYECPYPDW ASLS" mobile_element complement(23959465..23959901) /note="source:INTACT135F_F90_scaffold_2-int 13560 14013" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23965246..23966533) /note="source:CACAO_M_E4063_F12_scaffold_2 5145 6689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23966536..23970295 /note="source:INTACT60_F127_scaffold_9-int 1 3724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23969139..23974670) /note="source:INTACT464_F222_scaffold_9-int 6350 11886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23972671..23976970 /note="source:INTACT60_F127_scaffold_9-int 6134 10433" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23977071..23981427 /note="source:INTACT60_F127_scaffold_9-int 11758 16079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23981535..23981639 /note="source:CACAO_M_E43428_F369_scaffold_5 1278 1384" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23981590..23981833) /note="source:CACAO_M_E4063_F12_scaffold_2 4908 5150" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23986530..23988552) /locus_tag="TCM_014707" /note="dbxref CacaoGD:Thecc1EG014707" mRNA complement(join(23986530..23987238,23987402..23987521, 23987641..23987802,23987913..23988123,23988231..23988267, 23988400..23988552)) /locus_tag="TCM_014707" /product="Nodulin MtN3 family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014446" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014709t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11360.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04640t00001" mRNA complement(join(23986617..23987238,23987402..23987521, 23987641..23987802,23987913..23988123,23988231..23988270, 23988400..23988488)) /locus_tag="TCM_014707" /product="Nodulin MtN3 family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014446" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014709t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11360.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5607t1; inference alignment:Newbler:10:TSA:cgbaP1_g04640t00001" CDS complement(join(23986969..23987238,23987402..23987521, 23987641..23987802,23987913..23988123,23988231..23988267, 23988400..23988442)) /locus_tag="TCM_014707" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014709t1" /codon_start=1 /product="Nodulin MtN3 family protein, putative isoform 1" /protein_id="EOY22576.1" /db_xref="Phytozome:POPTR_0015s11360.1" /db_xref="TAIR:AT5G50790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFG7" /translation="MALHLSWAFVFGVLGNVVSFLVSLAPLPTFYQIYKKRTSEGFQS IPYVVSLFSAMLWIYYALLKKDAMLLITINTFCCFIQTFYIVAYFYYAPKKEKVVTVK LILLFNIFGFGVIFLSTFFLQNPLTRLHVLGYICMAFALSVFAAPLCILRKVIKTKSV EYMPFTLSVFLTLGAVMWFFYGLLLKDMNIAVPNVVGFIFGILQMILYAIYKNCPKKM VEDPKLHQLSEHIVDVVKLGTMVCSEVNAVAPQPNETNNNGGVVQAQNIKGNTTDHDA SNKV" CDS complement(join(23986969..23987238,23987402..23987521, 23987641..23987802,23987913..23988123,23988231..23988270, 23988400..23988442)) /locus_tag="TCM_014707" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014709t1" /codon_start=1 /product="Nodulin MtN3 family protein, putative isoform 2" /protein_id="EOY22577.1" /db_xref="Phytozome:POPTR_0015s11360.1" /db_xref="TAIR:AT5G50790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFG7" /translation="MALHLSWAFVFGVLVGNVVSFLVSLAPLPTFYQIYKKRTSEGFQ SIPYVVSLFSAMLWIYYALLKKDAMLLITINTFCCFIQTFYIVAYFYYAPKKEKVVTV KLILLFNIFGFGVIFLSTFFLQNPLTRLHVLGYICMAFALSVFAAPLCILRKVIKTKS VEYMPFTLSVFLTLGAVMWFFYGLLLKDMNIAVPNVVGFIFGILQMILYAIYKNCPKK MVEDPKLHQLSEHIVDVVKLGTMVCSEVNAVAPQPNETNNNGGVVQAQNIKGNTTDHD ASNKV" mobile_element 23992024..23992793 /note="source:scaffold_6_CACTA_0699 13042 13811" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23992975..23993493 /note="source:CACAO_PIF_E119_scaffold_3 1766 2279" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23993878..23994151) /note="source:INTACT58_F125_scaffold_5-int 2673 2940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23993879..23995053 /note="source:INTACT1313F_F380_scaffold_7-int 15048 15885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23995059..23995138 /note="source:CACAO_M_E44210_F112_scaffold_5 10000 10077" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23995076..23995263 /note="source:INTACT345_F202_scaffold_1-int 33 248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23995159..23995289) /note="source:scaffold_5_CACTA_0614 6117 6244" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23997389..23998135) /note="source:CACAO_M_E58877_F5_scaffold_9 17482 18226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24009337..24010159 /note="source:CACAO_M_S_E38315_F276_scaffold_4 21120 21938" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24010378..24010511) /note="source:scaffold_1_CACTA_0008 7247 7382" /mobile_element_type="transposon:TIR/CACTA" gene complement(24010832..24013709) /locus_tag="TCM_014709" /note="dbxref CacaoGD:Thecc1EG014709" mRNA complement(join(24010832..24011350,24012344..24012463, 24012659..24012820,24012929..24013139,24013264..24013300, 24013493..24013709)) /locus_tag="TCM_014709" /product="Medicago truncatula MTN3, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s11380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008493t1" /inference="similar to AA sequence:ricco:30147.m014445" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(24011063..24011350,24012344..24012463, 24012659..24012820,24012929..24013139,24013264..24013300, 24013493..24013544)) /locus_tag="TCM_014709" /note="dbxref ricco:30147.m014445; paralog of Thecc1EG008493t1" /codon_start=1 /product="Medicago truncatula MTN3, putative" /protein_id="EOY22578.1" /db_xref="TAIR:AT5G23660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGQ2" /translation="MGVFATDNPWVFISGLLGNISSFVVFLAPLPTFIRVCKKKSTEG FQSVPYVVALFSAMLWMYYAFVKSGAFLLVTINSFGCVVETAYIAIYIAYAPKQARMF TLRILLLMNFGGFCSILLVSRFLAKGSNRVEVLGWICVAFATGVFAAPLSIIRQVIRT KSVEFMPFYLSFFLTLSAIMWLLYGIFLKDLYIAIPNVLGFIFGLLQMVLYAIYRNSK TVTKEVEAPEHSIDITKLSTVMNSEVQEMSSEPDVAHDKSIGSCKVQNEHDQREKILE FANPNLLLGKCEA" mobile_element complement(24011414..24011489) /note="source:scaffold_1_CACTA_0008 13003 13080" /mobile_element_type="transposon:TIR/CACTA" gene complement(24013756..24022724) /locus_tag="TCM_014710" /note="dbxref CacaoGD:Thecc1EG014710" mRNA complement(join(24013756..24013898,24020774..24021124, 24021225..24021344,24021470..24021631,24021727..24021937, 24022073..24022109,24022563..24022724)) /locus_tag="TCM_014710" /product="Medicago truncatula MTN3, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014445" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014709t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11380.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11482t00001" mobile_element 24013882..24014816 /note="source:CACAO_M_E49279_F74_scaffold_6 1004 1936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24014814..24015163 /note="source:scaffold_10_CACTA_0130 7913 8270" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24015170..24016427 /note="source:scaffold_10_CACTA_0130 8380 9606" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24020350..24020365 /note="source:scaffold_6_CACTA_0703 3460 3503" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24020366..24020471) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3183 3281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24020472..24020492 /note="source:scaffold_6_CACTA_0703 3504 3569" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(24020837..24021124,24021225..24021344, 24021470..24021631,24021727..24021937,24022073..24022109, 24022563..24022602)) /locus_tag="TCM_014710" /note="paralog of Thecc1EG014709t1" /codon_start=1 /product="Medicago truncatula MTN3, putative" /protein_id="EOY22579.1" /db_xref="Phytozome:POPTR_0015s11380.1" /db_xref="TAIR:AT5G23660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S3W0" /translation="MAYHPWIIVSGILGNILSFMVYLAPLPTFLRVYRKKSTEGFQSI PYVVALVSAALWIYYATLKSNAFLLMTINSFGCFVETIYTVVFIIYAPKKARILTMKL LLLFNFGGLLLILLLTHFFSKGPSRIHIVGWFCVVSSAGVFAAPLSIMRLVVRTKSVE FMPFALSFFLTLSAIMWLIYGVLLKDFYISLPNIIGVVLGMIQMVLFVVYKKYKNIEN EQKQLPVQVANGKNLAPIKASNNTDSSLQVSGDVGVGRDENPHDHPLQHSHKSMESTN QAEPGECAV" mobile_element 24025153..24029127 /note="source:scaffold_3_CACTA_0393 1 3975" /mobile_element_type="transposon:TIR/CACTA" gene 24031776..24035786 /locus_tag="TCM_014711" /note="dbxref CacaoGD:Thecc1EG014711" mRNA join(24031776..24032265,24032770..24032952, 24033409..24033705,24034063..24034296,24034493..24035786) /locus_tag="TCM_014711" /product="DHHC-type zinc finger family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014443.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017278t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11400.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05651t00001" CDS join(24032170..24032265,24032770..24032952, 24033409..24033705,24034063..24034296,24034493..24035056) /locus_tag="TCM_014711" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017278t1" /codon_start=1 /product="DHHC-type zinc finger family protein isoform 1" /protein_id="EOY22580.1" /db_xref="Phytozome:POPTR_0015s11400.1" /db_xref="TAIR:AT3G26935.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BV41" /translation="MNGLQPPPPDLANEANHGDGFIQTYKAWKGSNVFVLGGRLIFGP DVRSLFFTIFLIAAPVAVFCVFVARKLMDDFPHHLGISIMAVAVALTLCDIVLLLLTS GRDPGIIPRNSHPPEPEGYEGISEFRPGQTPPLRLPRTKDVVVNGISVKIKYCDTCML YRPPRCSHCSICNNCVDRFDHHCPWVGQCIGLRNYRFFFMFVFSATLLCLYVHGFCWV YIRRIMDGEETTIWKAMTKTPASIVLLVYTFISVWFVGGLTVFHLYLISTNQQSFFSV LWQSTYENFRYRYDCRENPYNKGVIENFTEIFCTSIPPSKTNFRAKIPKEPAISPRTV SGGFISPNKGKAVGDIEMGRKPVWDEALGEAGDHEGQLSGDGMDKDSGLPDVSPDLSR ILPPESIEGRGVMNHPRRSSWGRNSEKWEISPEILPLSRVGESKRMNGRSNAESTNGN QQFETKS" mRNA join(24032932..24033047,24033409..24033705, 24034063..24034296,24034520..24035398) /locus_tag="TCM_014711" /product="DHHC-type zinc finger family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014443.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017278t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11400.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc140t2; inference alignment:Newbler:10:TSA:cgbaP2_g05651t00001" CDS join(24032949..24033047,24033409..24033705, 24034063..24034296,24034520..24035056) /locus_tag="TCM_014711" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017278t1" /codon_start=1 /product="DHHC-type zinc finger family protein isoform 2" /protein_id="EOY22581.1" /db_xref="Phytozome:POPTR_0015s11400.1" /db_xref="TAIR:AT3G26935.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BV41" /translation="MCEFLSLLKPLFLSGMLLVTDVLHLPILSVLFKDIVLLLLTSGR DPGIIPRNSHPPEPEGYEGISEFRPGQTPPLRLPRTKDVVVNGISVKIKYCDTCMLYR PPRCSHCSICNNCVDRFDHHCPWVGQCIGLRNYRFFFMFVFSATLLCLYVHGFCWVYI RRIMDGEETTIWKAMTKTPASIVLLVYTFISVWFVGGLTVFHLYLISTNQSTYENFRY RYDCRENPYNKGVIENFTEIFCTSIPPSKTNFRAKIPKEPAISPRTVSGGFISPNKGK AVGDIEMGRKPVWDEALGEAGDHEGQLSGDGMDKDSGLPDVSPDLSRILPPESIEGRG VMNHPRRSSWGRNSEKWEISPEILPLSRVGESKRMNGRSNAESTNGNQQFETKS" mobile_element complement(24036070..24036196) /note="source:CACAO_PIF_E465_scaffold_115 201 328" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(24036260..24039752) /locus_tag="TCM_014712" /note="dbxref CacaoGD:Thecc1EG014712" mRNA complement(join(24036260..24036888,24037539..24037726, 24039356..24039752)) /locus_tag="TCM_014712" /product="Translocase inner membrane subunit 8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008600001" /inference="similar to AA sequence:Phytozome:GSVIVT01008600001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1904t4" CDS complement(join(24036700..24036888,24037539..24037726, 24039356..24039536)) /locus_tag="TCM_014712" /codon_start=1 /product="Translocase inner membrane subunit 8" /protein_id="EOY22582.1" /db_xref="Phytozome:GSVIVT01008600001" /db_xref="TAIR:AT5G50810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6Z1H2" /translation="MFLLLFPRNVDSEDQELSPLPPYFTLKIAIETHYCSTRPQQQKL HDFYDLLSSRKTFNKSGQGCLGFLFGGGGGGGTSIISFWGLNEGFRLFVFAAICEAVL RFNLLQMDPSLNSAELQRFLNQEKEKAMVNEMVAKLTSVCWDKCITSTPGSKFSSSES ACLSHCAQRYMDMSLIIMKRFQSMQ" mobile_element complement(24037949..24038516) /note="source:CACAO_M_E4753_F17_scaffold_2 7255 7815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24037993..24039129 /note="source:scaffold_2_CACTA_0244 12381 13375" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24038517..24038729) /note="source:INTACT135F_F90_scaffold_2-int 13186 13993" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24038707..24039325) /note="source:scaffold_9_CACTA_0932 2793 3424" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24040713..24040827) /note="source:scaffold_4_CACTA_0510 5742 5852" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24043638..24043689) /note="source:CACAO_M_E49559_F88_scaffold_7 7680 7729" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24043651..24043710) /note="source:CACAO_M_E34409_F73_scaffold_5 2261 2322" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24046091..24047534 /locus_tag="TCM_014713" /note="dbxref CacaoGD:Thecc1EG014713" mRNA join(24046091..24046411,24046658..24046944, 24047049..24047534) /locus_tag="TCM_014713" /product="NAC domain protein, IPR003441, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014441" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008477t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s16490.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1756t1" CDS join(24046231..24046411,24046658..24046944, 24047049..24047330) /locus_tag="TCM_014713" /note="paralog of Thecc1EG008477t1" /codon_start=1 /product="NAC domain protein, IPR003441, putative" /protein_id="EOY22583.1" /db_xref="Phytozome:POPTR_0003s16490.1" /db_xref="TAIR:AT5G13180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GMQ3" /translation="MNKLNFVREGMTKLPPGFRFQPTDEELVFQYLKCKVFSFPLPAS IIPEINVCKYDPWDLPGESEQERYFFSSKEAKYRIGNRINRATASGYWKATGLDKQIT SRRYQIAGMRKTLVFHMGKPPHGSRTDWIMHEYRLVTVASKDCNSPLSKNPIIQNYLN HHMEKWVVCRIFLKKRSEDETIQSFCNNNHEEKKSMAVPHEPKFFYFMREKTGITPAS SSSSSSSSSSITEVSSSGADLEESSSHNIVR" gene 24049093..24050537 /locus_tag="TCM_014714" /note="dbxref CacaoGD:Thecc1EG014714" mRNA join(24049093..24049720,24049928..24050013, 24050192..24050537) /locus_tag="TCM_014714" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3627t1" CDS join(24049255..24049720,24049928..24050013, 24050192..24050353) /locus_tag="TCM_014714" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22584.1" /translation="MLPKLPPILGRKLEEIRRRRAGATLSKKQLLKDGDEDECASIHH NERRSLSSLSSPEPDEDSIGSAKVAPEPTEPKEIFSDQEVIDQEKSTEQNNNKDNNNA EEEDKEKVEELALEETEDEEYGRFSNVEGSLICPGSPSFRVYYIESLQNKEDNGKDDY MNKGSLSDTDVDAVETVESGKSTEESVAKIKKRGRKGMKFRRVGRPVKNFLNVKSCYY PSCGGLEISRLIAAKPATT" gene complement(24050733..24059168) /locus_tag="TCM_014715" /note="dbxref CacaoGD:Thecc1EG014715" mRNA complement(join(24050733..24056244,24057727..24057937, 24058330..24058425,24058854..24059168)) /locus_tag="TCM_014715" /product="DNA binding,ATP binding, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014439" /inference="similar to AA sequence:Phytozome:POPTR_0101s00260.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc450t5" mRNA complement(join(24050733..24056244,24057727..24057937, 24058854..24058988)) /locus_tag="TCM_014715" /product="DNA binding,ATP binding, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014439" /inference="similar to AA sequence:Phytozome:POPTR_0101s00260.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b014213t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc450t5" CDS complement(join(24051488..24056244,24057727..24057937, 24058330..24058425,24058854..24059021)) /locus_tag="TCM_014715" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA binding,ATP binding, putative isoform 1" /protein_id="EOY22585.1" /db_xref="Phytozome:POPTR_0101s00260.1" /db_xref="TAIR:AT3G48770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GT04" /translation="MLAMVTPKEHIEQIRKTKFSIGGEPNPLTEDLHQAVRNLSAELY TKDVHFLMELIQIWLPPRELKSQTRFDWIWPKNTKSSRMWLEKNNAEDNVYLEGVDPS LEFVITSRDITATGATATLLMFNNEKGFSSKNIESICSVGRSTKKGNRKRGYIGEKGI GFKSVFLITAQPYIFSNGYQIRFNEAPCPHCSLGYIVPEWVEEKPTLSDIRKVYGLSS ALPTTTIVLPLKPDKVKPVKQQLSSVHPEVLLFLSKIKCLSVREDNEDPRLNTVSAIA ITSETNFMTRKNIDAESYTLRLAAEENGNKFGRECSYFMWKQKFPVRQENKVERRMDV EELVITLAFPNEERLHRGMTLPGVYAFLPTEMVTNLPFIIQADFVLSSSRETILLDNK WNQGILDCVPSAFVNAFISLVKMTEDAPVSSLPRMFTFLPVNCSSYQQFNAIRESIRL KLVDEDILPSDESCMEQKFFHKPSEVGRIMPAFWDIVEKARKEGVGLHNLSSHGTYVL HSSFDRVEYDHILNFLGVGPVKNGWYAKCIQSSNIVLGVSEGVYLDLLLLLAENWSNI FLSTDIKNIPLVKYVDSFGGVSLFSISESSQQKKAVICLSNQVRHVSWLIDWNAEFRG VANRFFLPKSTQEAIRSCFEKETILEWLQNQVKVVPVSVYDYAAALIGYLGGERKLVV TYAHFLYHSLLKDFISAPNVRYLCGIMPLVDNYGNVTATTRRRVLVPANGSKWVSLIG SNPLKAEGYIELGEDYLRPGNFVGEITPEKKLLKFLGSNVAASDIPSLSPPNAAIPAV SSPLTKENTFLLLDWIQNMKNRGTLIPEKFLTSIKNGSWLKVTINGSSSYKPPSQSFF HSSSWGRFLQNGLVFVDIPLIDQSFYGDRISKYKEELKIIGVMFEYGEACAFIGKHLM RLVSSSTLGRDRVFSILGFIRYLRTKLLPPDEFICSIKEGMWLKTSHDYRSPVGAVLF DEEWKTATQICDVPFIDHTFYGDEIFCFKAELELLGVIVRFSGSYQLVIESLKSSSCL TSLKADAFLLALECMHYAKSSERLVTALKNVKCLKTNLGHKPPSECFLYDREWGCLLQ VFNCFPIIDCAYYGSTISSYKCELRRLGAVVDFGAAVTSFASKFRQQASLSSITKDNI LSFLSCYRQFKRTLHKFPSDLKNCIHEVKWLRTRLGDFRSPKDCILFGPKWESISTIT LLPFIDDTDNYCGKDIHEYRDELMSIGVVVEFEHGVKFVPGCLCFPRSSSMIAPTNAL SLLKCLRILLKDKNYTFSEAFLKKVSEKWLKTYTGYRSPGKSLLFDGRSGLKPTDGPF IDEGFYGSEIRTYRKELDSIGVTVDVEKGSTLLASHLAFHSDFATIIRIYKFLAEVGW VPDSEATRKIWIPDGNENGRWVKPDECVLHDKDGLFGLLLNVLEKHYKNKLPLQFFSG AFGVKSNPSLDDYCNLWKGWETSRQQLSHDECCAFWRFVVEHQSSKNEKILSERLVKL PVDSGSDGIMLFDKHDVFIADDLQLKDLFVQSSSCPLFVWYPQPSLPSLPRTMLLELY RKIGVRMISESVETKELSLKNDLELKQVNHRGAIRKELVRLLLGFLAGSSLKMESDKR HEAVKCLLNLTVLETSEPITVGYTLFLSSGETQEVRASRMIRWDKESSKIFIQKMDKS AGKKNFLECATYFAEAIAEGVLWEKEDQISSLSELIKLAFLLKFNEEAVGFLMKSKNL QVFVEDEELLSAAFPSE" CDS complement(join(24051488..24056244,24057727..24057937, 24058854..24058868)) /locus_tag="TCM_014715" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA binding,ATP binding, putative isoform 2" /protein_id="EOY22586.1" /db_xref="Phytozome:POPTR_0101s00260.1" /db_xref="TAIR:AT3G48770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GT04" /translation="MELIQNAEDNVYLEGVDPSLEFVITSRDITATGATATLLMFNNE KGFSSKNIESICSVGRSTKKGNRKRGYIGEKGIGFKSVFLITAQPYIFSNGYQIRFNE APCPHCSLGYIVPEWVEEKPTLSDIRKVYGLSSALPTTTIVLPLKPDKVKPVKQQLSS VHPEVLLFLSKIKCLSVREDNEDPRLNTVSAIAITSETNFMTRKNIDAESYTLRLAAE ENGNKFGRECSYFMWKQKFPVRQENKVERRMDVEELVITLAFPNEERLHRGMTLPGVY AFLPTEMVTNLPFIIQADFVLSSSRETILLDNKWNQGILDCVPSAFVNAFISLVKMTE DAPVSSLPRMFTFLPVNCSSYQQFNAIRESIRLKLVDEDILPSDESCMEQKFFHKPSE VGRIMPAFWDIVEKARKEGVGLHNLSSHGTYVLHSSFDRVEYDHILNFLGVGPVKNGW YAKCIQSSNIVLGVSEGVYLDLLLLLAENWSNIFLSTDIKNIPLVKYVDSFGGVSLFS ISESSQQKKAVICLSNQVRHVSWLIDWNAEFRGVANRFFLPKSTQEAIRSCFEKETIL EWLQNQVKVVPVSVYDYAAALIGYLGGERKLVVTYAHFLYHSLLKDFISAPNVRYLCG IMPLVDNYGNVTATTRRRVLVPANGSKWVSLIGSNPLKAEGYIELGEDYLRPGNFVGE ITPEKKLLKFLGSNVAASDIPSLSPPNAAIPAVSSPLTKENTFLLLDWIQNMKNRGTL IPEKFLTSIKNGSWLKVTINGSSSYKPPSQSFFHSSSWGRFLQNGLVFVDIPLIDQSF YGDRISKYKEELKIIGVMFEYGEACAFIGKHLMRLVSSSTLGRDRVFSILGFIRYLRT KLLPPDEFICSIKEGMWLKTSHDYRSPVGAVLFDEEWKTATQICDVPFIDHTFYGDEI FCFKAELELLGVIVRFSGSYQLVIESLKSSSCLTSLKADAFLLALECMHYAKSSERLV TALKNVKCLKTNLGHKPPSECFLYDREWGCLLQVFNCFPIIDCAYYGSTISSYKCELR RLGAVVDFGAAVTSFASKFRQQASLSSITKDNILSFLSCYRQFKRTLHKFPSDLKNCI HEVKWLRTRLGDFRSPKDCILFGPKWESISTITLLPFIDDTDNYCGKDIHEYRDELMS IGVVVEFEHGVKFVPGCLCFPRSSSMIAPTNALSLLKCLRILLKDKNYTFSEAFLKKV SEKWLKTYTGYRSPGKSLLFDGRSGLKPTDGPFIDEGFYGSEIRTYRKELDSIGVTVD VEKGSTLLASHLAFHSDFATIIRIYKFLAEVGWVPDSEATRKIWIPDGNENGRWVKPD ECVLHDKDGLFGLLLNVLEKHYKNKLPLQFFSGAFGVKSNPSLDDYCNLWKGWETSRQ QLSHDECCAFWRFVVEHQSSKNEKILSERLVKLPVDSGSDGIMLFDKHDVFIADDLQL KDLFVQSSSCPLFVWYPQPSLPSLPRTMLLELYRKIGVRMISESVETKELSLKNDLEL KQVNHRGAIRKELVRLLLGFLAGSSLKMESDKRHEAVKCLLNLTVLETSEPITVGYTL FLSSGETQEVRASRMIRWDKESSKIFIQKMDKSAGKKNFLECATYFAEAIAEGVLWEK EDQISSLSELIKLAFLLKFNEEAVGFLMKSKNLQVFVEDEELLSAAFPSE" mobile_element 24057095..24057206 /note="source:scaffold_2_CACTA_0256 3833 3947" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24059576..24059846 /note="source:CACAO_Again_on_S_E225_scaffold_7 1 277" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24059714..24059862) /note="source:CACAO_hAT_E1967_scaffold_5 1012 1160" /mobile_element_type="transposon:TIR/hAT" mobile_element 24059877..24060164 /note="source:CACAO_on_SS_E42_scaffold_2 24235 24538" /mobile_element_type="transposon:TIR/Mutator" mobile_element 24060338..24060670 /note="source:CACAO_MITE39_scaffold_2 14 354" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(24060739..24060789) /note="source:CACAO_on_E22_A_scaffold_2 4963 5013" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 24061745..24066010 /locus_tag="TCM_014716" /note="dbxref CacaoGD:Thecc1EG014716" mRNA join(24061745..24061813,24062115..24062179, 24062236..24062320,24062608..24062737,24062838..24062864, 24062945..24063007,24063139..24063225,24063387..24063455, 24064268..24064348,24064456..24064518,24064602..24064667, 24064823..24064861,24064971..24065095,24065201..24065348, 24065893..24066010) /locus_tag="TCM_014716" /product="Transketolase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g02380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008458t2" /inference="similar to AA sequence:Phytozome:Glyma14g02380.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1138t8_C2" CDS join(24061782..24061813,24062115..24062179, 24062236..24062320,24062608..24062737,24062838..24062864, 24062945..24063007,24063139..24063225,24063387..24063455, 24064268..24064348,24064456..24064518,24064602..24064667, 24064823..24064861,24064971..24065095,24065201..24065348, 24065893..24065943) /locus_tag="TCM_014716" /note="paralog of Thecc1EG008458t2" /codon_start=1 /product="Transketolase family protein, putative" /protein_id="EOY22587.1" /db_xref="Phytozome:Glyma14g02380.2" /db_xref="TAIR:AT5G50850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P11177" /translation="MLVHYCLIGIGFFRRRRGNVGDHQAKCQQWSVALCLLFSFRCRG FVLHFTRLEITPPPQKRTTFSHSNTFMLAMLFQRTVREALNSALDEEMSADPRVFLIG EEVGEYQGAYKISKSLLEKYGPERVRDTPITEACFAGIGVGAAYYGLRPVVEFMTFNF SMQLSVPIVFRGPNGAAAGVAAQHSQCYASWYGTCPGLKPDPVVFLENELLQVSFPVS AEALNSSFCLPIGKAKIEREGKDVTITAFSKMVGYALKATDMLAKEGINAEVINLRSI RPLDRATINTSVRKTNRLVTEEEGFPQNGVGAEIWHFIVKHCTFCSASVVEESFKFLD APVERIGAADVPMPYAANLERMAVPQVEDIVRAAKRTCYRSV" gene complement(24066374..24072118) /locus_tag="TCM_014717" /note="dbxref CacaoGD:Thecc1EG014717" mRNA complement(join(24066374..24066677,24066822..24067235, 24067726..24067849,24067934..24068034,24068305..24068532, 24069289..24069606,24070820..24071104,24071209..24072118)) /locus_tag="TCM_014717" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014439" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021134t2" /inference="similar to AA sequence:ricco:30147.m014439" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04722t00001" CDS complement(join(24066888..24067235,24067726..24067849, 24067934..24068034,24068305..24068532,24069289..24069606, 24070820..24071104,24071209..24071577)) /locus_tag="TCM_014717" /note="dbxref ricco:30147.m014439; paralog of Thecc1EG021134t2" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY22588.1" /db_xref="TAIR:AT5G50860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVM9" /translation="MGCVFGKQSQSSSSGRRRINTAAPPLPPRTRRRRSSDESPTIVS VTDAVDGVVDVKEPEIPRQQQQKARHTGDLAVRIPAPERRRPPPDLNQQGWPSWLMAV AGDAIRDWTPRRANTFEKLDKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVK FMAREILVLRKLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLAACQGIKFTEPQ VKCYMKQLLSGLEHCHKQGVLHRDIKGSNLLIDNEGILKIADFGLATCYDPEQKKPLT SRVVTLWYRPPELLLGATYYGVGVDLWSAGCILAELLSGKPIMPGRTEVEQLHKIFKL CGSPSEEYWKKSKLPNATLFKPQQPYKCCIAETFKDFPSSSLPLIETLLTIDPEERST ATAALNSDFFTTEPYACESSSLPKYPPSKEMDVKLRDEEARRQRGLASKVNAVDGTRR IKVRERASRAIPAPEANAEIQANLDKWRVMTQTNVKSKSEKFPPPHQDGAVGHPVDTS QKGPISFNASDTSFSSSIFTSKSSGSVKSSEPGSGPSRRRKAKRDTQRAPSRKFIRGL KPSSIGLSVDMLFRGKSEVFRSQN" mobile_element complement(24076305..24076376) /note="source:CACAO_PIF_E465_scaffold_115 5756 5827" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 24076394..24076511 /note="source:scaffold_1_CACTA_0016 1413 1538" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24076579..24076730) /note="source:INTACT383F_F354_scaffold_3-int 1114 1257" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(24082869..24084407) /locus_tag="TCM_014719" /note="dbxref CacaoGD:Thecc1EG014719" mRNA complement(join(24082869..24084067,24084196..24084407)) /locus_tag="TCM_014719" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.54 coverage" CDS complement(join(24083769..24084067,24084196..24084358)) /locus_tag="TCM_014719" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22589.1" /translation="MGVLCSLHHRQPDPLCHSYFCTKPQQFFAQNSRTFVTGREEQVR GGMGEENTSPGKIKGECAALTKIYSAITIRFQQVKLHSLAPPCFKFDCQTLAMLNHLE ATLSVAAILARVPMSLYYLELHRQLVSLPQNYVAFHSQFVDLHSGYCMIRC" gene complement(24084485..24087889) /locus_tag="TCM_014720" /note="dbxref CacaoGD:Thecc1EG014720" mRNA complement(join(24084485..24085132,24085349..24085438, 24085651..24085810,24087189..24087237,24087672..24087889)) /locus_tag="TCM_014720" /product="Ubiquitin-conjugating enzyme 27" /inference="alignment:exonerate- protein:2:ricco:30147.m014435" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031769t1" /inference="similar to AA sequence:ricco:30147.m014435" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc569t12" CDS complement(join(24085025..24085132,24085349..24085438, 24085651..24085810,24087189..24087237,24087672..24087849)) /locus_tag="TCM_014720" /note="dbxref ricco:30147.m014435; paralog of Thecc1EG031769t1" /codon_start=1 /product="Ubiquitin-conjugating enzyme 27" /protein_id="EOY22590.1" /db_xref="TAIR:AT5G50870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI61" /translation="MIDFARVQKELQECSREKDTSGIKVSPKSDNLARLTGIIPGPLG TPYEGGSFEIDITLPDGYPFEPPKMKFVTKVWHPNISSQSGAICLDILKDQWSPALTL KTALLSVQALLSAPEPDDPQDAVVAQQYLREYQTFVGTARYWTESFAKASSLGLEEKV QRLVEMGFAVGLVRSTLEAVGGDENLALEKLLSS" mobile_element 24095071..24095570 /note="source:scaffold_1_CACTA_0008 14015 14434" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24095411..24095601) /note="source:scaffold_8_CACTA_0850 11546 11721" /mobile_element_type="transposon:TIR/CACTA" gene 24095863..24101087 /locus_tag="TCM_014721" /note="dbxref CacaoGD:Thecc1EG014721" mRNA join(24095863..24096372,24097146..24098779, 24098883..24099134,24099462..24099542,24099673..24100233, 24100829..24101087) /locus_tag="TCM_014721" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene06454" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017290t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008617001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1007t2_C2" CDS join(24097541..24098779,24098883..24099134, 24099462..24099542,24099673..24100233,24100829..24100885) /locus_tag="TCM_014721" /note="paralog of Thecc1EG017290t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22591.1" /db_xref="Phytozome:GSVIVT01008617001" /db_xref="TAIR:AT3G26890.5" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3X4" /translation="MGLPQVSSSGIAEEVAASLSTFVQTPHRIVGVSSCDLIGVQGGI LGNRIQVDLPRSSFGDLQRKTTGEHPKDPETLNVNKDGRSNIYRLKIGTMEQNGWLAH KSGHNIQKPVPRILGFETRALHSPVDVFNGVQTSSTVVSITSNAAESNGSLARKRLLS PLSGMLCPDEFNGDALDIGGGINQSGFGSGTENCSIYVSQEHKKAHIGNSSSLDAAVW STSCFPEWKNSPDDNCGANSMFLSDGPLLKNKELKSDNHFVPTTPGLNYSGETNKKRY QTLAIAIPVKKAASPPLSLSPLGPKFTERIKHAKGCRDVAEKLDDDYMTFKDMEQSLN GMVSVQTDKDFRLSSKSFRHFEDLQNRFDPCSPELTSAVGPKTGKLVRSLSGHSVRRS LVGSFEESLLTGRLLSGKVSQKIDGFLAVLSITGGNFSPQSQKLPFTVTSVDGDNYLL YYSSIDLARHISTNKCRGSKMKRSLSMDDSQAENRRLRVPMKGRIQLVLSNPEKTPIH TFLCNYDLTDMPAGTKTFLRQRITLAPAAATNIPGKERHQSSEVKYDVKASPIQNINN SSPFSGKFHTTRYPDQNMKDIERETAGRVGNLDNDSSGLNISELIQTDKDNSPLNAGN VNLNKFVHSSSRVNENTIGTGVLRYALHVRFLCPSPKKCSKSVRRCKSDPLSEPAGTM NIDRERRFYLYSDMRVVFPQRHSDADEGQLHVEYDFPSNPKYFDISS" gene 24101666..24102369 /locus_tag="TCM_014722" /note="dbxref CacaoGD:Thecc1EG014722" mRNA 24101666..24102369 /locus_tag="TCM_014722" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.47 coverage" CDS 24102164..24102364 /locus_tag="TCM_014722" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22592.1" /translation="MMQSVRTGNHVSQIASYLWGKESLSTNQTQTSIGSKCSLLFVTK PYIYSTWGLVRNFQFVDEKKLS" gene 24105196..24106314 /locus_tag="TCM_014723" /note="dbxref CacaoGD:Thecc1EG014723" mRNA join(24105196..24105478,24105592..24105715, 24105820..24106314) /locus_tag="TCM_014723" /product="CASP-like protein GSVIVT01008618001" /inference="alignment:exonerate-protein:2:frave:gene06453" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017295t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008618001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14339t00001" CDS join(24105279..24105478,24105592..24105715, 24105820..24106041) /locus_tag="TCM_014723" /note="paralog of Thecc1EG017295t1" /codon_start=1 /product="CASP-like protein GSVIVT01008618001" /protein_id="EOY22593.1" /db_xref="Phytozome:GSVIVT01008618001" /db_xref="TAIR:AT4G25040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A7PHN8" /translation="MESIEAKFPENPSLKTHKLVLGAQICLRIVAIATALAATWVMLT SKQTVMVFGIPFDARYSYSSAFKFFAFANAFACGFTVLSLLFVFFFSRRGLTPANYFL LFLHDLLMMSLALSGVAAGTAIGYVGRFGNIHAGWLQICDRLGKFCHKVTASLIFSYL SVLCLLVLTIISASKSRQIKV" gene complement(24107422..24110909) /locus_tag="TCM_014724" /note="dbxref CacaoGD:Thecc1EG014724" mRNA complement(join(24107422..24107803,24107967..24108531, 24109020..24110909)) /locus_tag="TCM_014724" /product="ARM repeat superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene06452" /inference="similar to AA sequence:Phytozome:POPTR_0012s10620.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5639t1" mRNA complement(join(24107422..24107803,24107967..24108605, 24109020..24110909)) /locus_tag="TCM_014724" /product="ARM repeat superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene06452" /inference="similar to AA sequence:Phytozome:POPTR_0012s10620.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b014221t1a2; alternateUTRof:Thecc1EG014724t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5639t1" CDS complement(24109056..24110708) /locus_tag="TCM_014724" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein isoform 1" /protein_id="EOY22594.1" /db_xref="Phytozome:POPTR_0012s10620.1" /db_xref="TAIR:AT5G50900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI58" /translation="MKVPENDPISLSNHLLASLSEQIPNINNFKGKWALIKSKLSGLQ AQLADFSDFPASSSNPLAVDLLYSITQTLNDAVSLSQKCQLADLTEGKLKTQSDIDAV LAKLDRHIKDSEILIRSGVLQDGAVSTSSSKKEAVRVESRNLITRLQIGTTESKNSAM DSLLGLLQEDDKNVMIAVAQGVVPVLVRLLDSSSLEMKEKTVAAISRVSTVESSKHVL IAEGLLLLNHLLRVLESGSGFAKEKACIALQALSFSKENARAIGSRGGISSLLEICQA GTPGSQAFAAGVLKNLASVDEIKENFIEENAVFVLIGLAASGTALAQENSIGCLCNLV SDDENLRLLIVKEGGIECLKNFWDSSPNPKSLEVAVELVRRLASCSPIAEALVADGFV ARLVAVLNCGVLGVRIAAARAVYELGFNSKTRKEMGECGCTVALIKMMDGKAVEEKEA AAMALSTLMLYAGNRKVFQKDERGIVNAVQLLDPLIQNLDKKYPVLILSELVHSKKCR KQMVAAGACVYLQKLVEMNVEGAKKLLESLGRGKIWGVFARP" CDS complement(24109056..24110708) /locus_tag="TCM_014724" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein isoform 1" /protein_id="EOY22595.1" /db_xref="Phytozome:POPTR_0012s10620.1" /db_xref="TAIR:AT5G50900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI58" /translation="MKVPENDPISLSNHLLASLSEQIPNINNFKGKWALIKSKLSGLQ AQLADFSDFPASSSNPLAVDLLYSITQTLNDAVSLSQKCQLADLTEGKLKTQSDIDAV LAKLDRHIKDSEILIRSGVLQDGAVSTSSSKKEAVRVESRNLITRLQIGTTESKNSAM DSLLGLLQEDDKNVMIAVAQGVVPVLVRLLDSSSLEMKEKTVAAISRVSTVESSKHVL IAEGLLLLNHLLRVLESGSGFAKEKACIALQALSFSKENARAIGSRGGISSLLEICQA GTPGSQAFAAGVLKNLASVDEIKENFIEENAVFVLIGLAASGTALAQENSIGCLCNLV SDDENLRLLIVKEGGIECLKNFWDSSPNPKSLEVAVELVRRLASCSPIAEALVADGFV ARLVAVLNCGVLGVRIAAARAVYELGFNSKTRKEMGECGCTVALIKMMDGKAVEEKEA AAMALSTLMLYAGNRKVFQKDERGIVNAVQLLDPLIQNLDKKYPVLILSELVHSKKCR KQMVAAGACVYLQKLVEMNVEGAKKLLESLGRGKIWGVFARP" mobile_element 24114237..24114349 /note="source:scaffold_4_CACTA_0506 6916 7026" /mobile_element_type="transposon:TIR/CACTA" gene 24118686..24124204 /locus_tag="TCM_014726" /note="dbxref CacaoGD:Thecc1EG014726" mRNA join(24118686..24119280,24119420..24119485, 24119810..24119898,24120143..24120288,24120371..24120495, 24120613..24120706,24120802..24120965,24121296..24121457, 24121570..24121603,24121818..24121852,24122053..24122179, 24122286..24122452,24122599..24122706,24123552..24124066) /locus_tag="TCM_014726" /product="Long chain base2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400054097" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017312t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10630.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03321t00002" mRNA join(24118870..24119280,24119420..24119485, 24119810..24119898,24120143..24120288,24120371..24120495, 24120613..24120706,24120802..24120965,24121296..24121457, 24122053..24122179,24122286..24122452,24122599..24122706, 24123552..24124204) /locus_tag="TCM_014726" /product="Long chain base2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400054097" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017312t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008621001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5649t2; inference alignment:Newbler:10:TSA:cgbaL_g03321t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc599t4" CDS join(24119155..24119280,24119420..24119485, 24119810..24119898,24120143..24120288,24120371..24120495, 24120613..24120706,24120802..24120965,24121296..24121457, 24121570..24121603,24121818..24121852,24122053..24122179, 24122286..24122452,24122599..24122706,24123552..24123647) /locus_tag="TCM_014726" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017312t1" /codon_start=1 /product="Long chain base2 isoform 1" /protein_id="EOY22596.1" /db_xref="Phytozome:POPTR_0012s10630.1" /db_xref="TAIR:AT5G23670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LRB4" /translation="MITIPYLTALTTYFSYGLLFAFGQFRDFFRKIFDWWHASNLQGY APICLGLEDFYFRRLYHRIQDCFGRPISSAPDAWFDVVERYSNDNNKTMKRTDKINRC LNLGSYNYLGFAASDEYCTPRVIDSLNRFSASTCSTRVDGGTTTVHKELEECVANFVG KPAAIVFGMGYVTNSAILPVLMGKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPS HLEKVLREQIAEGQPRTHRPWKKIIVVVEGIYSMEGELCKLPEIVAICKKYKAYVYLD EAHSIGAVGKTGRGVCELLGVDTADVDIMMGTFTKSFGSCGGYIAGSKLLEGFYSVMM AGAIGKICPVIREELIQYLKYTCPAHLYTTSISPPAARQIISAIKVILGEDGSSRGAQ KLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLKQNIAVVT VAFPATPLLLARARICISAAHTKEDLLKALEVISEVGDMVGIKYFPAEPKKLEQGKDT IKLE" CDS join(24119155..24119280,24119420..24119485, 24119810..24119898,24120143..24120288,24120371..24120495, 24120613..24120706,24120802..24120965,24121296..24121457, 24122053..24122179,24122286..24122452,24122599..24122706, 24123552..24123647) /locus_tag="TCM_014726" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017312t1" /codon_start=1 /product="Long chain base2 isoform 2" /protein_id="EOY22597.1" /db_xref="Phytozome:GSVIVT01008621001" /db_xref="TAIR:AT5G23670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LRB4" /translation="MITIPYLTALTTYFSYGLLFAFGQFRDFFRKIFDWWHASNLQGY APICLGLEDFYFRRLYHRIQDCFGRPISSAPDAWFDVVERYSNDNNKTMKRTDKINRC LNLGSYNYLGFAASDEYCTPRVIDSLNRFSASTCSTRVDGGTTTVHKELEECVANFVG KPAAIVFGMGYVTNSAILPVLMGKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPS HLEKVLREQIAEGQPRTHRPWKKIIVVVEGIYSMEGELCKLPEIVAICKKYKAYVYLD EAHSIGAVGKTGRGVCELLGVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTC PAHLYTTSISPPAARQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEV LGDNDSPVMPIMLYNPAKIPAFSRECLKQNIAVVTVAFPATPLLLARARICISAAHTK EDLLKALEVISEVGDMVGIKYFPAEPKKLEQGKDTIKLE" mobile_element 24122755..24123434 /note="source:INTACT687_F13_scaffold_3-int 1297 2024" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24124331..24129049) /locus_tag="TCM_014727" /note="dbxref CacaoGD:Thecc1EG014727" mRNA complement(join(24124331..24124584,24127860..24129049)) /locus_tag="TCM_014727" /product="Sterile alpha motif domain-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014430" /inference="similar to AA sequence:ricco:30147.m014430" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08929t00001" CDS complement(24127917..24128870) /locus_tag="TCM_014727" /note="dbxref ricco:30147.m014430" /codon_start=1 /product="Sterile alpha motif domain-containing protein, putative" /protein_id="EOY22598.1" /db_xref="TAIR:AT3G48800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3X9" /translation="MADINPSDGQLNGVVGPLVVASSETVGSKRQRRPSVRLGDIGGD QPYDSHIRRPSSSSAAAAGIKQWKHQPHHSLNPSVAAASTKSSKTRALTNLSTDFNTN NETLDDERDANNNNSNLDSVAIGSWRVKDFKKRGSATKRVRSNWVSKIDDSGGGGGGN ISINGSKNNANNNNVETEDKYSAGEDNDDFDMENSESPMKERSPIHSLDNLGVDGSER EVLYHGSSQRRPIRTRVSDGVELSGPSDTDIRQCGEDGVRIWLNSLGLGRYAPVFEIH EVDDEVLPLLTLEDLKDMGINAVGSRRKMFCAIQKLGKGFS" gene complement(24129832..24135480) /locus_tag="TCM_014728" /note="dbxref CacaoGD:Thecc1EG014728" mRNA complement(join(24129832..24130448,24132274..24132345, 24132592..24132673,24132762..24132916,24133421..24133485, 24133566..24133656,24133746..24133938,24134364..24134464, 24134584..24134661,24134770..24134859,24135060..24135133, 24135222..24135480)) /locus_tag="TCM_014728" /product="Glycosyltransferase family 29 (sialyltransferase) family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014429" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011891t2" /inference="similar to AA sequence:Phytozome:GSVIVT01008625001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b014225t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5665t5" mRNA complement(join(24129833..24130448,24132274..24132383, 24132592..24132673,24132762..24132916,24133421..24133485, 24133566..24133656,24133746..24133938,24134364..24134464, 24134584..24134661,24134770..24134859,24135060..24135133, 24135222..24135480)) /locus_tag="TCM_014728" /product="Glycosyltransferase family 29 (sialyltransferase) family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014429" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011891t2" /inference="similar to AA sequence:ricco:30147.m014429" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5665t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5665t5" CDS complement(join(24130253..24130448,24132274..24132383, 24132592..24132673,24132762..24132916,24133421..24133485, 24133566..24133656,24133746..24133938,24134364..24134464, 24134584..24134661,24134770..24134859,24135060..24135133, 24135222..24135309)) /locus_tag="TCM_014728" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014429; paralog of Thecc1EG011891t2" /codon_start=1 /product="Glycosyltransferase family 29 (sialyltransferase) family protein isoform 1" /protein_id="EOY22599.1" /db_xref="TAIR:AT3G48820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY00" /translation="MRILQLGLLVALFSGVAAILIYITGLSNRYENHQLSGEDWEALQ SLQSGFQKCVSANGLGLQAISGKDYCQVTLTYPSDTDSKWRDPNTGEVEGLSFEFNLC EAVATWEQVRNSTTILTREFIDALPNGWEEYAWRRINKGVLLNHCKNKALCMEKLSLV LPETPPYVPRQFARCAVIGNSGDLLKTRFGKEIDSYDVVIRENGAPIENYTEYVGKKS SFRLLNRGSAKALDKVVELDETRQEVLIIKTTIHDIMSQMIREIPIRNPVYLMLGASF GSAAKGTGLKALEFALSVCDSVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYQM MECLGLIKIHSPMRADSSRVVKWLPSRSAIRAARIASEKLLRRVGAGSEDLLGSCSVI KKQVKRKHLSVSKLRKAAVDHQKFVKGTTMYPLEHSPGHGQLCIVPVD" CDS complement(join(24132316..24132345,24132592..24132673, 24132762..24132916,24133421..24133485,24133566..24133656, 24133746..24133938,24134364..24134464,24134584..24134661, 24134770..24134859,24135060..24135133,24135222..24135309)) /locus_tag="TCM_014728" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011891t2" /codon_start=1 /product="Glycosyltransferase family 29 (sialyltransferase) family protein isoform 2" /protein_id="EOY22600.1" /db_xref="Phytozome:GSVIVT01008625001" /db_xref="TAIR:AT3G48820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY00" /translation="MRILQLGLLVALFSGVAAILIYITGLSNRYENHQLSGEDWEALQ SLQSGFQKCVSANGLGLQAISGKDYCQVTLTYPSDTDSKWRDPNTGEVEGLSFEFNLC EAVATWEQVRNSTTILTREFIDALPNGWEEYAWRRINKGVLLNHCKNKALCMEKLSLV LPETPPYVPRQFARCAVIGNSGDLLKTRFGKEIDSYDVVIRENGAPIENYTEYVGKKS SFRLLNRGSAKALDKVVELDETRQEVLIIKTTIHDIMSQMIREIPIRNPVYLMLGASF GSAAKGTGLKALEFALSVCDSVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYQM MECLGPSGEVAAKS" mobile_element 24138309..24138407 /note="source:CACAO_Again_on_E207_scaffold_9 991 1085" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24138329..24138423) /note="source:CACAO_M_E43482_F345_scaffold_5 1180 1251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24142196..24142309) /note="source:scaffold_4_CACTA_0503 6779 6884" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24142305..24143061) /note="source:scaffold_4_CACTA_0482 16794 17512" /mobile_element_type="transposon:TIR/CACTA" gene complement(24150927..24153994) /locus_tag="TCM_014729" /note="dbxref CacaoGD:Thecc1EG014729" mRNA complement(join(24150927..24151450,24151614..24151742, 24151895..24152074,24152191..24152274,24152377..24152445, 24152575..24152640,24152990..24153172, 24153336..>24153896)) /locus_tag="TCM_014729" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008628001" /inference="similar to AA sequence:Phytozome:GSVIVT01008628001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5676t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5676t3" mRNA complement(join(24151075..24151459,24151617..24151742, 24151895..24152074,24152191..24152274,24152377..24152445, 24152575..24152640,24152990..24153172,24153336..24153994)) /locus_tag="TCM_014729" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008628001" /inference="similar to AA sequence:Phytozome:GSVIVT01008628001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1478t2; alternateUTRof:Thecc1EG014729t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5676t3" mRNA complement(join(24151194..24151450,24151617..24151742, 24151895..24152074,24152191..24152274,24152377..24152445, 24152575..24152640,24152990..24153172,24153336..24153944)) /locus_tag="TCM_014729" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008628001" /inference="similar to AA sequence:Phytozome:GSVIVT01008628001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5676t3" CDS complement(join(24151650..24151742,24151895..24152074, 24152191..24152274,24152377..24152445,24152575..24152640, 24152990..24153172,24153336..>24153896)) /locus_tag="TCM_014729" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3" /protein_id="EOY22603.1" /db_xref="Phytozome:GSVIVT01008628001" /db_xref="TAIR:AT5G50915.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3Y0" /translation="FSSLLSPDVYINLGIFDRHRPTFLDCYFWLPSSIISSLSLCLSH HFLETLHFPLFELQKPLPHMAAFSFQPHPFLLDSIFLPNTPTKVSGFMEEGNINSNCF SQFYPPEPIQESPLDPKFHESSCLDHSSKLAHSDNEPSVTKKQSTDDSTVVDKLESGE QVTQNVTLTDRKRKTRSRTTLNSAQSKDAKEGKSKKQRKRNDVLKNEKKESKADKKDQ KKATEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKILQRLVPGCDKVTGKAL MLDEIINYVQSLQNQVEFLSMKLASVNPMFYDFGVDLEALMVRPERVNGSIASPLPSL QQCNPTQPTAFADTTTTTFVPANNYPLLDASAALLLQQGQRPNVFSQDNGSLLWDVED QRQKFLNSSGLNDNLCCFH" CDS complement(join(24151650..24151742,24151895..24152074, 24152191..24152274,24152377..24152445,24152575..24152640, 24152990..24153172,24153336..24153707)) /locus_tag="TCM_014729" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY22601.1" /db_xref="Phytozome:GSVIVT01008628001" /db_xref="TAIR:AT5G50915.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3Y0" /translation="MAAFSFQPHPFLLDSIFLPNTPTKVSGFMEEGNINSNCFSQFYP PEPIQESPLDPKFHESSCLDHSSKLAHSDNEPSVTKKQSTDDSTVVDKLESGEQVTQN VTLTDRKRKTRSRTTLNSAQSKDAKEGKSKKQRKRNDVLKNEKKESKADKKDQKKATE EPPTGYIHVRARRGQATDSHSLAERVRREKISERMKILQRLVPGCDKVTGKALMLDEI INYVQSLQNQVEFLSMKLASVNPMFYDFGVDLEALMVRPERVNGSIASPLPSLQQCNP TQPTAFADTTTTTFVPANNYPLLDASAALLLQQGQRPNVFSQDNGSLLWDVEDQRQKF LNSSGLNDNLCCFH" CDS complement(join(24151650..24151742,24151895..24152074, 24152191..24152274,24152377..24152445,24152575..24152640, 24152990..24153172,24153336..24153707)) /locus_tag="TCM_014729" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY22602.1" /db_xref="Phytozome:GSVIVT01008628001" /db_xref="TAIR:AT5G50915.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3Y0" /translation="MAAFSFQPHPFLLDSIFLPNTPTKVSGFMEEGNINSNCFSQFYP PEPIQESPLDPKFHESSCLDHSSKLAHSDNEPSVTKKQSTDDSTVVDKLESGEQVTQN VTLTDRKRKTRSRTTLNSAQSKDAKEGKSKKQRKRNDVLKNEKKESKADKKDQKKATE EPPTGYIHVRARRGQATDSHSLAERVRREKISERMKILQRLVPGCDKVTGKALMLDEI INYVQSLQNQVEFLSMKLASVNPMFYDFGVDLEALMVRPERVNGSIASPLPSLQQCNP TQPTAFADTTTTTFVPANNYPLLDASAALLLQQGQRPNVFSQDNGSLLWDVEDQRQKF LNSSGLNDNLCCFH" mRNA complement(join(<24151717..24151742,24151895..24151971, 24152191..24152274,24152377..24152445,24152575..24152640, 24152990..24153172,24153336..24153994)) /locus_tag="TCM_014729" /product="DNA binding protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008628001" /inference="similar to AA sequence:Phytozome:POPTR_0012s10670.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1540t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5676t3" CDS complement(join(<24151718..24151742,24151895..24151971, 24152191..24152274,24152377..24152445,24152575..24152640, 24152990..24153172,24153336..24153707)) /locus_tag="TCM_014729" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="DNA binding protein, putative isoform 4" /protein_id="EOY22604.1" /db_xref="Phytozome:POPTR_0012s10670.1" /db_xref="TAIR:AT5G50915.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RA85" /translation="MAAFSFQPHPFLLDSIFLPNTPTKVSGFMEEGNINSNCFSQFYP PEPIQESPLDPKFHESSCLDHSSKLAHSDNEPSVTKKQSTDDSTVVDKLESGEQVTQN VTLTDRKRKTRSRTTLNSAQSKDAKEGKSKKQRKRNDVLKNEKKESKADKKDQKKATE EPPTGYIHVRARRGQATDSHSLAERVRREKISERMKILQRLVPGCDKVTGKALMLDEI INYVQSLQNQVEFLSMKLASVNPMFYDFGVDLEALMVRPELITILFWMLQLHFYFSRG RGPMSSLRIMVVYCGM" mobile_element complement(24159246..24160398) /note="source:scaffold_3_CACTA_0378 1490 2511" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24160827..24161830) /note="source:scaffold_3_CACTA_0378 473 1492" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24161775..24162715 /note="source:CACAO_M_S_E34046_F60_scaffold_4 2579 3509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24162169..24164449) /note="source:CACAO_M_E52852_F389_scaffold_8 242 2645" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24163093..24164671 /note="source:CACAO_M_E71058_F389_scaffold_10 827 2446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24164673..24165147) /note="source:scaffold_3_CACTA_0378 1 477" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24166689..24169244 /note="source:CACAO_M_E22921_F74_scaffold_3 1 2556" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24174464..24179088 /locus_tag="TCM_014731" /note="dbxref CacaoGD:Thecc1EG014731" mRNA join(24174464..24174936,24175035..24175137, 24175239..24175358,24175460..24175557,24175848..24175931, 24176117..24176250,24176358..24176430,24176510..24176555, 24176719..24176828,24176930..24177037,24177115..24177174, 24177278..24177339,24177527..24177839,24178477..24179088) /locus_tag="TCM_014731" /product="Polynucleotide adenylyltransferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000078t1" /inference="similar to AA sequence:ricco:30147.m014427" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04787t00001" CDS join(24174859..24174936,24175035..24175137, 24175239..24175358,24175460..24175557,24175848..24175931, 24176117..24176250,24176358..24176430,24176510..24176555, 24176719..24176828,24176930..24177037,24177115..24177174, 24177278..24177339,24177527..24177839,24178477..24178674) /locus_tag="TCM_014731" /note="dbxref ricco:30147.m014427; paralog of Thecc1EG000078t1" /codon_start=1 /product="Polynucleotide adenylyltransferase family protein" /protein_id="EOY22605.1" /db_xref="TAIR:AT5G23690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M300" /translation="MAVPGLSFVCKPHFSLRPPLFHCFRKIRFSSVAAIETLDEPEVF IKDKSSQGSDSSHRNNVSEEDSKLPQWKKLNSQDLGISTTNISKPTRKVLNGLKRKGY EVYLVGGCVRDLILKRTPKDFDIITTAELREVVRAFSRCEIVGRRFPICHVHIGDTIV EVSSFSTSGQKFGRSLNYKLGRPAGCDEKDFIRWRNCLQRDFTINGLMFDPYARIIYD YMGGIEDIRKAKVRTVIPAGTSFQEDCARILRAIRIAARLGFSFSRETAHFIKNLSCS ILRLDKSRILMEMNYMLAYGSAEASLRLLWKFGLLEILLPIQAAYFVSNGLRRCDKRS NMLLSLFSNLDRLLAPDRPCHGSLWVGILAFHKALFDKPRDPLVVAAYSLVVHNGGDI LEAVNIATRINKSHDTSFRELSEPRNLENQTLINEVMDLAASVKSTLCKMTDEHFVSQ AMSAYPQAPFSDLVFIPLALYLKVCKVFECVREGAEKGFVAKQGSRIDYELLALGSLS ELRHTFARVVFDTVYPLNRT" gene complement(24179177..24182551) /locus_tag="TCM_014732" /note="dbxref CacaoGD:Thecc1EG014732" mRNA complement(join(24179177..24179544,24179682..24179806, 24179924..24180138,24180766..24180809,24180897..24181258, 24182090..24182551)) /locus_tag="TCM_014732" /product="Phosphate transporter 3,1" /inference="alignment:exonerate- protein:2:ricco:30147.m014426.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017323t1" /inference="similar to AA sequence:frave:gene01383" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01583t00001" CDS complement(join(24179496..24179544,24179682..24179806, 24179924..24180138,24180766..24180809,24180897..24181258, 24182090..24182410)) /locus_tag="TCM_014732" /note="dbxref frave:gene01383; paralog of Thecc1EG017323t1" /codon_start=1 /product="Phosphate transporter 3,1" /protein_id="EOY22606.1" /db_xref="TAIR:AT5G14040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2Z8" /translation="MAISDNSRQSLLPSFLYSSPSSTKRVFGLDTALSNANHHHMLPR LPSSNVVGDAGAPSSRFVIPAPKEKIEMFSPAFYAACTAGGILSCGLTHTAVTPLDLV KCNMQINPTKYKGISSGFGVLLKEQGAKGLFKGWVPTLLGYSAQGACKMGFYEFFKKY YSDIAGPEFATKYKTLIYLAGSASAELIADVALCPMEAVKVRVQTQPGFARGLSDGFP KIVKAEGAGGLYKGLVPLWGRQIPYTMMKFACFENIVELLYKYSIPTPKDQCSKSLQL GVSFAGGYIAGVFCAVVSHPADNLVSFLNNAKGATVGDAVKKIGLWGLFTRGLPLRIV MIGTLTGAQWGIYDSFKVFVGLPTTGGGAPIPAVAKA" gene complement(24182932..24183954) /locus_tag="TCM_014733" /note="dbxref CacaoGD:Thecc1EG014733" mRNA complement(24182932..24183954) /locus_tag="TCM_014733" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018948t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(24183584..24183874) /locus_tag="TCM_014733" /note="paralog of Thecc1EG018948t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22607.1" /translation="MKFSIDGATRGCMELAGIGGILRACSGEAKIIFSKALGEADSNL VEMMAVKKALLIFSTSRWNKNRKLLIENNSSTAVKWTKHPNSASWRMRQLIL" gene 24189209..24197218 /locus_tag="TCM_014735" /note="dbxref CacaoGD:Thecc1EG014735" mRNA join(24189209..24189757,24189870..24190042, 24191039..24191114,24191290..24191331,24191423..24191485, 24192144..24192193,24192269..24192296,24192572..24192646, 24192724..24192834,24192911..24192971,24193487..24193603, 24193693..24193811,24194133..24194202,24194633..24194674, 24194846..24194886,24195419..24195545,24196376..24196499, 24196671..24197218) /locus_tag="TCM_014735" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008390t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10720.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6016t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6016t5" CDS join(24189410..24189757,24189870..24190042, 24191039..24191114,24191290..24191331,24191423..24191485, 24192144..24192193,24192269..24192296,24192572..24192646, 24192724..24192834,24192911..24192971,24193487..24193603, 24193693..24193811,24194133..24194202,24194633..24194674, 24194846..24194886,24195419..24195545,24196376..24196499, 24196671..24196689) /locus_tag="TCM_014735" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG008390t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22608.1" /db_xref="Phytozome:POPTR_0012s10720.1" /db_xref="TAIR:AT3G48860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWD5" /translation="MDRRRTASPVYGRQWSGGSSSSGSSSPAHPQSRLHPGAAGGMST IKRTQNVAAKAAAQRLAQVMASQTPDDDEEDDDLGFRFGGPPVPTSFSNSSLNHSTLP AISVTRPNRSPSPALGRNFVEHAPSVRSTSAGRPAISMRSTAPTLMPPSRTSVRTPVT IPPIDPPNRSRDKRFTADVGQLKAKDTGDQREASALRDELDMLQEENENLLDKLRSAE ERREEGEARARELEKQVASLGEGVSLEAKLLSRKEAALRQREAALKAAKQTKDGREEE IAALRSELENLKDGAATAVEQLHEAKSETKALRSMTQRMILTQEEMEEVVLKRCWLAR YWGLAVQHGICADIAVSKHEYWSALAPLPFEVVVSAGQKAKEEAWDRGGGDPDRSKLV RDLNDLTGEGNIESMLSVEMGLRELASLKVEDAVVHALGKHRRLSLLHQSVADSKSPG DPKLIDAFELSEEEGEDVLFKEAWLTYLWRRAKVHGVEEDIAEERLQFWIRRSGQSPT SHDAVDVNRGLFELRKLGIEQQLWEASRKEIDQPSAALLSNHKYLEDSTRYLV" mRNA join(24189412..24189757,24189870..24190042, 24191039..24191114,24191290..24191331,24191423..24191485, 24192144..24192193,24192269..24192296,24192572..24192646, 24192724..24192834,24192911..24192971,24193487..24193603, 24193693..24193811,24194133..24194202,24194633..24194674, 24194846..24194886,24195419..24195545,24196376..24196636) /locus_tag="TCM_014735" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008390t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10720.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05716t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6016t5" CDS join(24189533..24189757,24189870..24190042, 24191039..24191114,24191290..24191331,24191423..24191485, 24192144..24192193,24192269..24192296,24192572..24192646, 24192724..24192834,24192911..24192971,24193487..24193603, 24193693..24193811,24194133..24194202,24194633..24194674, 24194846..24194886,24195419..24195545,24196376..24196503) /locus_tag="TCM_014735" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG008390t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY22609.1" /db_xref="Phytozome:POPTR_0012s10720.1" /db_xref="TAIR:AT3G48860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TYT5" /translation="MSTIKRTQNVAAKAAAQRLAQVMASQTPDDDEEDDDLGFRFGGP PVPTSFSNSSLNHSTLPAISVTRPNRSPSPALGRNFVEHAPSVRSTSAGRPAISMRST APTLMPPSRTSVRTPVTIPPIDPPNRSRDKRFTADVGQLKAKDTGDQREASALRDELD MLQEENENLLDKLRSAEERREEGEARARELEKQVASLGEGVSLEAKLLSRKEAALRQR EAALKAAKQTKDGREEEIAALRSELENLKDGAATAVEQLHEAKSETKALRSMTQRMIL TQEEMEEVVLKRCWLARYWGLAVQHGICADIAVSKHEYWSALAPLPFEVVVSAGQKAK EEAWDRGGGDPDRSKLVRDLNDLTGEGNIESMLSVEMGLRELASLKVEDAVVHALGKH RRLSLLHQSVADSKSPGDPKLIDAFELSEEEGEDVLFKEAWLTYLWRRAKVHGVEEDI AEERLQFWIRRSGQSPTSHDAVDVNRGLFELRKLGIEQQLWEASRKEIDQPSAALLSN HKYLEDS" mRNA join(24189873..24190042,24191039..24191114, 24191290..24191331,24191423..24191485,24192144..24192189, 24192269..24192297,24192572..24192646,24192724..24192834, 24192911..24192971,24193487..24193603,24193693..24193811, 24194133..24194202,24194633..24194674,24194846..24194886, 24195419..24195545,24196376..24196499,24196671..24197218) /locus_tag="TCM_014735" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008390t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10720.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6016t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6016t5" CDS join(24189939..24190042,24191039..24191114, 24191290..24191331,24191423..24191485,24192144..24192189, 24192269..24192297,24192572..24192646,24192724..24192834, 24192911..24192971,24193487..24193603,24193693..24193811, 24194133..24194202,24194633..24194674,24194846..24194886, 24195419..24195545,24196376..24196499,24196671..24196689) /locus_tag="TCM_014735" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG008390t1" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY22610.1" /db_xref="Phytozome:POPTR_0012s10720.1" /db_xref="TAIR:AT3G48860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWD5" /translation="MRSTAPTLMPPSRTSVRTPVTIPPIDPPNRSRDKRFTADVGQLK AKDTGDQREASALRDELDMLQEENENLLDKLRSAEERREEGEARARELEKQVASLGEG VSLEAKLLRRKQLCVKERAALKAAKQTKDGREEEIAALRSELENLKDGAATAVEQLHE AKSETKALRSMTQRMILTQEEMEEVVLKRCWLARYWGLAVQHGICADIAVSKHEYWSA LAPLPFEVVVSAGQKAKEEAWDRGGGDPDRSKLVRDLNDLTGEGNIESMLSVEMGLRE LASLKVEDAVVHALGKHRRLSLLHQSVADSKSPGDPKLIDAFELSEEEGEDVLFKEAW LTYLWRRAKVHGVEEDIAEERLQFWIRRSGQSPTSHDAVDVNRGLFELRKLGIEQQLW EASRKEIDQPSAALLSNHKYLEDSTRYLV" gene 24200626..24204586 /locus_tag="TCM_014737" /note="dbxref CacaoGD:Thecc1EG014737" mRNA join(24200626..24201039,24201206..24201307, 24201403..24201498,24202047..24202139,24202236..24202315, 24202413..24202694,24202791..24202915,24203273..24203365, 24203445..24203562,24203726..24204586) /locus_tag="TCM_014737" /product="Serine carboxypeptidase-like 45 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008386t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s10730.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc448t10" CDS join(24200787..24201039,24201206..24201307, 24201403..24201498,24202047..24202139,24202236..24202315, 24202413..24202694,24202791..24202915,24203273..24203365, 24203445..24203562,24203726..24203875) /locus_tag="TCM_014737" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG008386t2" /codon_start=1 /product="Serine carboxypeptidase-like 45 isoform 1" /protein_id="EOY22611.1" /db_xref="Phytozome:POPTR_0012s10730.1" /db_xref="TAIR:AT1G28110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VY01" /translation="MYSSPWKAMLIAVAMLQLCFSMEVESSLAHPDKIVRLPGQPRVG FQQFSGYVTVDEKKHKVLFYYFVEAEIDPASKPLVLWLNGGPGCSSVGVGAFSENGPF RPNGEVLVRNDYSWNREANMLYLETPIGVGFSYSTNSSSYVAVDDETTARDNLVFLQR WYHKFPNYRQRDLFITGESYAGHYIPQLAKLMVELNKKQNLFNLKGIALGNPVLEFAI DFNSRAEYFWSHGLISDSTYRMFTSVCNYSRYVSEYYRDSVSPSCSRVMSQVSRETSK FVDKYDVTLDVCISSVLSQSMVLNPQQVSERVDVCVEDKIVNYLNRKDVQKALHALLV GVRRWAVCSNILDYQLLNLEIPTISIVGSLIKAGIPVLVYSGDQDSVIPLTGSRTLVR GLAKELGLETTVPYRVWFEGKQVGGWTQVYGNILAFATIRGASHEAPFSQPERSLMLF KSFLEGKPLPEVF" mRNA join(24200825..24201039,24201206..24201307, 24201403..24201498,24202047..24202139,24202236..24202315, 24202413..24202694,24202791..24202906,24203716..24203971) /locus_tag="TCM_014737" /product="Serine carboxypeptidase-like 45 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008386t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s10730.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01094t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc448t10" CDS join(24200829..24201039,24201206..24201307, 24201403..24201498,24202047..24202139,24202236..24202315, 24202413..24202694,24202791..24202906,24203716..24203875) /locus_tag="TCM_014737" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG008386t2" /codon_start=1 /product="Serine carboxypeptidase-like 45 isoform 2" /protein_id="EOY22612.1" /db_xref="Phytozome:POPTR_0012s10730.1" /db_xref="TAIR:AT1G28110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VY01" /translation="MLQLCFSMEVESSLAHPDKIVRLPGQPRVGFQQFSGYVTVDEKK HKVLFYYFVEAEIDPASKPLVLWLNGGPGCSSVGVGAFSENGPFRPNGEVLVRNDYSW NREANMLYLETPIGVGFSYSTNSSSYVAVDDETTARDNLVFLQRWYHKFPNYRQRDLF ITGESYAGHYIPQLAKLMVELNKKQNLFNLKGIALGNPVLEFAIDFNSRAEYFWSHGL ISDSTYRMFTSVCNYSRYVSEYYRDSVSPSCSRVMSQVSRETSKFVDKYDVTLDVCIS SVLSQSMVLNPQQVSERVDVCVEDKIVNYLNRKDVQKALHALLVGVRRWAVSLQVGGW TQVYGNILAFATIRGASHEAPFSQPERSLMLFKSFLEGKPLPEVF" gene 24204634..24211380 /locus_tag="TCM_014738" /note="dbxref CacaoGD:Thecc1EG014738" mRNA join(24204634..24205221,24205421..24205498, 24205603..24205745,24206284..24206488,24206957..24207133, 24207295..24207455,24207800..24208889,24209370..24209516, 24209645..24209872,24210258..24210415,24210582..24211306) /locus_tag="TCM_014738" /product="Phosphoprotein phosphatase, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014421" /inference="similar to AA sequence:ricco:30147.m014421" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc212t22" mRNA join(24205102..24205221,24205421..24205498, 24205603..24205745,24206284..24206488,24206957..24207133, 24207295..24207455,24207800..24208889,24209370..24209516, 24209645..24209757,24210258..24210415,24210582..24211380) /locus_tag="TCM_014738" /product="Phosphoprotein phosphatase, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014421" /inference="similar to AA sequence:ricco:30147.m014421" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5769t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc212t22" mRNA join(24205102..24205221,24205421..24205498, 24205603..24205745,24206289..24206488,24206957..24207133, 24207295..24207455,24207800..24208889,24209370..24209516, 24209645..24209872,24210258..24210415,24210582..24211380) /locus_tag="TCM_014738" /product="Phosphoprotein phosphatase, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014421" /inference="similar to AA sequence:ricco:30147.m014421" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5769t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc212t22" CDS join(24205165..24205221,24205421..24205498, 24205603..24205745,24206284..24206488,24206957..24207133, 24207295..24207455,24207800..24208889,24209370..24209516, 24209645..24209872,24210258..24210415,24210582..24210942) /locus_tag="TCM_014738" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014421" /codon_start=1 /product="Phosphoprotein phosphatase, putative isoform 1" /protein_id="EOY22613.1" /db_xref="TAIR:AT5G23720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RA78" /translation="MAQPQKENPAAIINSLHLQEKEEEKELDLGSDEPDAPLPLTVTS RVLYMLGDITAGPASRFTQWLELVRKRSGKYRSSGFPNRPNRLDSMASSAEDSPVDSP SLLPTEHPPEINLWERLGKAAVLDIKSSSFSWDMLSSLHHTEHSSSTDHSEDEQNKAL EVTVNSGGVVFFALFNQPGVDDTSPKEAAAVIKFSSSRMATQSERLGYEFAKWLGIRT PQARVIHNSSPEWFQIKEAAQKARITATSEGDEVGEVTCSELLEALELSRCLFLMSYV HGSPLLESVSGFDSKGTAERTAAALGRVLMLDLVIRNEDRLPCRELRWRGNPANLLLA DKTSSANMGSLDEAFDSAIKRFRPRVIRAIQKERRASSVDSRLSPHSPGLVSQSSDLS EITESPKSSDMSIVSPTFSESFHSGSHIVAIDSGVPRRPPVGKRANDQVIYPKLVELL LNSSNYSSNLLHDITCGKLGTASPDDADTTDMRGTETTSVVQEFRSGFRAALRDLQGF HIFLLTLHQKLDSLLRQFLTILNKTSGDFDKEDLAVPESPLHPPCLGGIASPSTPSKE RVLSDNRSDYSDSELQRTAPKSSSSGHRESMDSSSPMSREGWHGKFHKGSGEPLHSLR LTAKLRDFHKFAKVDAESGRDLEQWNEMLKNDAVKLCQENNFNTGFFEGSDNNSVVDA YELKVRLEHILERIALISEAANTEKPSLITSSLLIGGALAARSVYTLQHLGISHILCL CSNEIGQSDSQYPDLFEYKNFSICDNEDSNISGIFEEASDFIDHVEQIGGRVLVHCFE GRSRSATLVIAYLMLRKNLTLLEAWNALKRVHRRAQPNDGFSRILVDLDWKLHGKVSM EWHQRKPMMKVCPICGKNAGLSSSSLKLHLQKAHKKLSSGSVDSAMTMEIQKALDALK MNRGGSVSPTQRQSHSVMDE" CDS join(24205165..24205221,24205421..24205498, 24205603..24205745,24206284..24206488,24206957..24207133, 24207295..24207455,24207800..24208889,24209370..24209516, 24209645..24209757,24210258..24210336) /locus_tag="TCM_014738" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014421" /codon_start=1 /product="Phosphoprotein phosphatase, putative isoform 3" /protein_id="EOY22615.1" /db_xref="TAIR:AT5G23720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RA78" /translation="MAQPQKENPAAIINSLHLQEKEEEKELDLGSDEPDAPLPLTVTS RVLYMLGDITAGPASRFTQWLELVRKRSGKYRSSGFPNRPNRLDSMASSAEDSPVDSP SLLPTEHPPEINLWERLGKAAVLDIKSSSFSWDMLSSLHHTEHSSSTDHSEDEQNKAL EVTVNSGGVVFFALFNQPGVDDTSPKEAAAVIKFSSSRMATQSERLGYEFAKWLGIRT PQARVIHNSSPEWFQIKEAAQKARITATSEGDEVGEVTCSELLEALELSRCLFLMSYV HGSPLLESVSGFDSKGTAERTAAALGRVLMLDLVIRNEDRLPCRELRWRGNPANLLLA DKTSSANMGSLDEAFDSAIKRFRPRVIRAIQKERRASSVDSRLSPHSPGLVSQSSDLS EITESPKSSDMSIVSPTFSESFHSGSHIVAIDSGVPRRPPVGKRANDQVIYPKLVELL LNSSNYSSNLLHDITCGKLGTASPDDADTTDMRGTETTSVVQEFRSGFRAALRDLQGF HIFLLTLHQKLDSLLRQFLTILNKTSGDFDKEDLAVPESPLHPPCLGGIASPSTPSKE RVLSDNRSDYSDSELQRTAPKSSSSGHRESMDSSSPMSREGWHGKFHKGSGEPLHSLR LTAKLRDFHKFAKVDAESGRDLEQWNEMLKNDAVKLCQENNFNTGFFEGSDNNSVVDA YELKVRLEHILERIALISEAANTEKPSLITSSLLIGGALAARYVTTKIQTSAVSLKKL LILSIMLNK" CDS join(24206411..24206488,24206957..24207133, 24207295..24207455,24207800..24208889,24209370..24209516, 24209645..24209872,24210258..24210415,24210582..24210942) /locus_tag="TCM_014738" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014421" /codon_start=1 /product="Phosphoprotein phosphatase, putative isoform 2" /protein_id="EOY22614.1" /db_xref="TAIR:AT5G23720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RA78" /translation="MLSSLHHTEHSSSTDHSEDEQNKALEVTVNSGGVVFFALFNQPG VDDTSPKEAAAVIKFSSSRMATQSERLGYEFAKWLGIRTPQARVIHNSSPEWFQIKEA AQKARITATSEGDEVGEVTCSELLEALELSRCLFLMSYVHGSPLLESVSGFDSKGTAE RTAAALGRVLMLDLVIRNEDRLPCRELRWRGNPANLLLADKTSSANMGSLDEAFDSAI KRFRPRVIRAIQKERRASSVDSRLSPHSPGLVSQSSDLSEITESPKSSDMSIVSPTFS ESFHSGSHIVAIDSGVPRRPPVGKRANDQVIYPKLVELLLNSSNYSSNLLHDITCGKL GTASPDDADTTDMRGTETTSVVQEFRSGFRAALRDLQGFHIFLLTLHQKLDSLLRQFL TILNKTSGDFDKEDLAVPESPLHPPCLGGIASPSTPSKERVLSDNRSDYSDSELQRTA PKSSSSGHRESMDSSSPMSREGWHGKFHKGSGEPLHSLRLTAKLRDFHKFAKVDAESG RDLEQWNEMLKNDAVKLCQENNFNTGFFEGSDNNSVVDAYELKVRLEHILERIALISE AANTEKPSLITSSLLIGGALAARSVYTLQHLGISHILCLCSNEIGQSDSQYPDLFEYK NFSICDNEDSNISGIFEEASDFIDHVEQIGGRVLVHCFEGRSRSATLVIAYLMLRKNL TLLEAWNALKRVHRRAQPNDGFSRILVDLDWKLHGKVSMEWHQRKPMMKVCPICGKNA GLSSSSLKLHLQKAHKKLSSGSVDSAMTMEIQKALDALKMNRGGSVSPTQRQSHSVMD E" gene complement(24211311..24218231) /locus_tag="TCM_014739" /note="dbxref CacaoGD:Thecc1EG014739" mRNA complement(join(24211311..24213062,24213296..24213385, 24213472..24213547,24213649..24213866,24214210..24214425, 24215067..24215252,24215330..24215449,24215556..24215671, 24216160..24216741,24217818..24218231)) /locus_tag="TCM_014739" /product="CLPC" /inference="alignment:exonerate- protein:2:ricco:30147.m014420" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014795t1" /inference="similar to AA sequence:Phytozome:Glyma04g37740.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc203t26" CDS complement(join(24211881..24213062,24213296..24213385, 24213472..24213547,24213649..24213866,24214210..24214425, 24215067..24215252,24215330..24215449,24215556..24215671, 24216160..24216724)) /locus_tag="TCM_014739" /note="paralog of Thecc1EG014795t1" /codon_start=1 /product="CLPC" /protein_id="EOY22616.1" /db_xref="Phytozome:Glyma04g37740.1" /db_xref="TAIR:AT5G50920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8EU05" /translation="MAKVLAQSTIVPALVTSRSHGPSKESSKSKGSAKMMCSLQTPGL RIRSFSGLRGSNSLDNMVRFGQDFRSKVAISISSRRGRGSRCVPKAMFERFTEKAIKV IMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRG SGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLG ADPSNIRTQVIRMVGEGNEVSVVPGGSTGNTKMPTLEEYGTNLTKLAEEGKLDPVVGR QVQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILK PALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYE IHHKLRYTDDALISAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELE KELRQITKSKNEAVRSQDFEKAGELRDREIELRAQITAIQEKDKEMNKAEAEAGEGGP VVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRA RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSK LIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFR PEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKAKEIELQVTERFRERVVEEGY NPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPES LADPIPVV" mobile_element 24222870..24222944 /note="source:CACAO_M_S_E119872_F88_scaffold_10 4855 4926" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24223028..24223387) /note="source:CACAO_on_E71_scaffold_9 2681 3010" /mobile_element_type="transposon:TIR/hAT" mobile_element 24223069..24223449 /note="source:CACAO_hAT_E1792_scaffold_4 21 387" /mobile_element_type="transposon:TIR/hAT" mobile_element 24223448..24223461 /note="source:scaffold_8_CACTA_0859 16346 16446" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24223462..24223548 /note="source:CACAO_on_E78_scaffold_13 678 763" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24223658..24223709) /note="source:CACAO_hAT_E2547_scaffold_5 3 54" /mobile_element_type="transposon:TIR/hAT" gene 24227954..24232978 /locus_tag="TCM_014741" /note="dbxref CacaoGD:Thecc1EG014741" mRNA join(24227954..24229146,24230202..24230426, 24231426..24231596,24232063..24232978) /locus_tag="TCM_014741" /product="Inducer of CBF expression 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014419" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017336t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11650.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03694t00001" CDS join(24227974..24229146,24230202..24230426, 24231426..24231596,24232063..24232146) /locus_tag="TCM_014741" /note="paralog of Thecc1EG017336t1" /codon_start=1 /product="Inducer of CBF expression 1" /protein_id="EOY22617.1" /db_xref="Phytozome:POPTR_0015s11650.1" /db_xref="TAIR:AT3G26744.4" /db_xref="UniProtKB/TrEMBL:UniRef50_A3FM76" /translation="MLSRVNGGVVWMEDKEDEESASWNRTNNSNNNNNNSVIMENKEE MGSLSTFKSMLEEEWYVANNSISSHQDIRDLSFSPNLADHQDNILLHHHHHHQQQHHP VDSSSSCSPSSSVFNNLDPSQVHYFLQPKPTLSSLLNVVSNNPLEHGFDLSEIGFLDN QATNATTLLNRGNAGVLGSFADLSHGNQIDTANLCPETQFSSSRMVQLPENGAGLAGF QGFDENPGNALFLNRSKVLRPLESFPSVGAQPTLFQKRAALRKNLADSGGNFGLFGGG KVNALNGIEGDKGKKEMDEENEKRKIIYRDDLEDVSIDGSALNYDSDEFTENNKVEET LKNGGNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKM DRASILGDAIEYLKELLQRINDLHNELESNPPSSSLTPTTSFHPLTPTPVTLPSRIKD ELCPSSLPSPNGQPARVEVRLREGKAVNIHMFCGRRPGLLLSTMRALDNLGLDIQQAV ISCFNGFAMDIFRAEQCKEGQDIHPEQIKAVLLDSAGFHNVI" gene 24233085..24234202 /locus_tag="TCM_014742" /note="dbxref CacaoGD:Thecc1EG014742" mRNA 24233085..24234202 /locus_tag="TCM_014742" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.59 coverage" CDS 24233124..24233336 /locus_tag="TCM_014742" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22618.1" /translation="MLIIPTQSHYSGGQHWTGIPLFIVKNQLPYHSRTYQAAGYNGSS DSGVKKSIWSSSWQTLMFRAVLPMQS" gene complement(24233173..24239705) /locus_tag="TCM_014743" /note="dbxref CacaoGD:Thecc1EG014743" mRNA complement(join(24233173..24233538,24234112..24234245, 24234440..24234638,24234729..24234919,24235002..24235939, 24236029..24236200,24236308..24236383,24236547..24236666, 24236834..24236998,24237102..24237192,24237419..24237503, 24237596..24237751,24237869..24237925,24238028..24238123, 24238375..24238487,24238627..24239339)) /locus_tag="TCM_014743" /product="Auxin response factor-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008639001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008374t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008639001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc24t28" CDS complement(join(24234473..24234638,24234729..24234919, 24235002..24235939,24236029..24236200,24236308..24236383, 24236547..24236666,24236834..24236998,24237102..24237192, 24237419..24237503,24237596..24237751,24237869..24237925, 24238028..24238123,24238375..24238487,24238627..24238771)) /locus_tag="TCM_014743" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG008374t1" /codon_start=1 /product="Auxin response factor-like protein isoform 1" /protein_id="EOY22619.1" /db_xref="Phytozome:GSVIVT01008639001" /db_xref="TAIR:AT5G62000.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84QI6" /translation="MTTSEVSIKGNCVNGRGESFSSGYSEPNDARSTMEGQNGHSTRP AAVRDPETALYTELWHACAGPLVTVPREGERVFYFAQGHIEQVEASTNQVADQQMPVY DLPSKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQDENTVDKEPPIPPPPRFHVHSF CKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRG QPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGDLRVGVRRAMRQQSNVPSSVISSH SMHLGVLATAWHAYTTRTIFTVYYKPRTSPAEFIVPFDQYVESVKNNYSIGMRFKMRF EGEEAPEQRFTGTIVGIEDCDPKRWQDSKWRCLKVRWDETSTIPRPERVSPWKIEPAL APPALNPLPMPRPKRPRSNAVPSSPDSSVLTREGSSKVTVDPSPGSGFSRVLQGQEFS TLRGNFAESNESDTAEKSVIWPPSVDDEKIDVVSASRRFGSENWMSSGRHEPTYTDLL SGFGLNADSSHGYCPPLADQTLAAGNPIRKQLLDKEGKLGSWSLMPSGLSLKLVDNNA KPTLQGSDMPYQARGNGRFSGFGEYPILQGHRIEPSHGNWLMPPPTSSHFESPAHSRD LISKTSSVQEHEAGKSREGNCKLFGIPLISNSVSSESAVSHINVLNKPVNHMQPSSHQ VRAFESDQKFEKSKVSQLPEDLSAFNEQDKTFQLGQPHTREIQSKPPSVSTRSCTKVH KQGIALGRSVDLTKFNNYEALIAELDQLFDFGGELMAPRRGWLVVYTDDEGDMMLVGD DPWQEFCAMVRKIGIYTREEVQKMKPGSLSSKGEDNPVSAEELDAKEVKCPGFSAENC " mRNA complement(join(24234610..24234638,24234729..24235939, 24236029..24236200,24236308..24236383,24236547..24236666, 24236834..24236998,24237102..24237192,24237419..24237503, 24237596..24237751,24237869..24237925,24238028..24238123, 24238375..24238487,24238627..24239705)) /locus_tag="TCM_014743" /product="Auxin response factor-like protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008639001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008374t4" /inference="similar to AA sequence:Phytozome:GSVIVT01008639001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc25t10; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc24t28" CDS complement(join(24234981..24235939,24236029..24236200, 24236308..24236383,24236547..24236666,24236834..24236998, 24237102..24237192,24237419..24237503,24237596..24237751, 24237869..24237925,24238028..24238123,24238375..24238487, 24238627..24238771)) /locus_tag="TCM_014743" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG008374t4" /codon_start=1 /product="Auxin response factor-like protein isoform 2" /protein_id="EOY22620.1" /db_xref="Phytozome:GSVIVT01008639001" /db_xref="TAIR:AT5G62000.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84QI6" /translation="MTTSEVSIKGNCVNGRGESFSSGYSEPNDARSTMEGQNGHSTRP AAVRDPETALYTELWHACAGPLVTVPREGERVFYFAQGHIEQVEASTNQVADQQMPVY DLPSKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQDENTVDKEPPIPPPPRFHVHSF CKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRG QPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGDLRVGVRRAMRQQSNVPSSVISSH SMHLGVLATAWHAYTTRTIFTVYYKPRTSPAEFIVPFDQYVESVKNNYSIGMRFKMRF EGEEAPEQRFTGTIVGIEDCDPKRWQDSKWRCLKVRWDETSTIPRPERVSPWKIEPAL APPALNPLPMPRPKRPRSNAVPSSPDSSVLTREGSSKVTVDPSPGSGFSRVLQGQEFS TLRGNFAESNESDTAEKSVIWPPSVDDEKIDVVSASRRFGSENWMSSGRHEPTYTDLL SGFGLNADSSHGYCPPLADQTLAAGNPIRKQLLDKEGKLGSWSLMPSGLSLKLVDNNA KPTLQGSDMPYQARGNGRFSGFGEYPILQGHRIEPSHGNWLMPPPTSSHFESPAHSRD LISKTSSVQEHEAGKSREGNCKLFGIPLISNSVSSESAVSHINVLNKPVNHMQPSSHQ VRAFESDQKFEKSKVSQLPEDLSAFNEQDKTFQLGQPHTREIQSKPPSVSTRSCTKVL SLSS" mobile_element complement(24241582..24241766) /note="source:scaffold_4_CACTA_0483 963 1154" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24242033..24242223) /note="source:scaffold_9_CACTA_0942 16665 16853" /mobile_element_type="transposon:TIR/CACTA" gene 24251135..24256915 /locus_tag="TCM_014744" /note="dbxref CacaoGD:Thecc1EG014744" mRNA join(24251135..24251573,24252743..24256203, 24256806..24256849) /locus_tag="TCM_014744" /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene06430" /inference="similar to AA sequence:Phytozome:POPTR_0015s11670.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc213t5_C2" mobile_element 24251887..24251989 /note="source:scaffold_4_CACTA_0483 2553 2648" /mobile_element_type="transposon:TIR/CACTA" mRNA join(24252783..24256203,24256806..24256915) /locus_tag="TCM_014744" /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11670.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc129t13; alternateUTRof:Thecc1EG014744t1" CDS 24252822..24255887 /locus_tag="TCM_014744" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /protein_id="EOY22621.1" /db_xref="Phytozome:POPTR_0015s11670.1" /db_xref="TAIR:AT5G61990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFK4" /translation="MRLTSKRRLYHFTKTRLSRLKSASFCTSAENDAAAEEIAAILEK KDWKRLLETTSELKNKLNPETVHSILHQSSVRDPKRLFNFFNWAIHQVPNPQNLDSFS FLAIILCNSKLFRDANMVLDKMVQTRRPVQAVLASIIRCYKEYKGNDAGVFEILIDCY KKVGSWNNAVYVFLGAKEGGFLPGLVCCNNFLGDLVKFNKLDLFWKVFDGMVDAKLVP DVYTFTNVINAHCRVGDIEKAKRVILEMEEKGCTPGLVTYNVMIGGLCRAGVVDEALK LKKSMAEKGFAPDAYTYNTLIDGFCREKRFSEAKLMMTEMRRAGLNPNHFAYTALIDG LMKQGNVVEGFRVKDEMVARGIKLNVFTYNALISGVCKAGDLEKAKALFNEMVWIGAE PDAQTFSILIESYSRAKKIDKAYELLNEMKRSNLTPTLYTYSGIINGLCHCGDLERAN HVLDAMVEGGLKPNLVIYTNLIKGHIQKSRFEEARRILDRMMEKGVLPDVICCNTLIS GLCKAQKMDEARSCLVEMVDRGLKPNAHTYGAFIHGYAKAGEIEAVERCFKEMQNYGI APNNVIYSELINSHCKAGNVTEALSTLRCMSEQGVVPDVKTYTVLIHGLATNGRINDA RDVFSQLHGKGIVPDVFTYTSLISGFCKLGDMKAALNLYKEMCQKSIAPNIVTYNTLI GGLCKAGNIEKARKVFNEISQKALAPNTKSYTMIIDGYCKSGNLTQAFQLLDEMPSRG VPPDSFAYCALVDGCCKEGKLEKALSLFYEMVRKGFASTTAFNALIDGLCKSGKPNDA NGLLEDMVDKCITPNHITYTILIDHHCKAGEMKEAENLFLEMQRRNLVPNTVTYTLLL HGYDRLGRRAEMFALFERMAANAVEPDEIIYGLMTNAHLKENNLIGNLKLLDEILVKD VVLDQKWSSLLLDAVCKREEFSEVVKFLDEMAEQGLRLSPVTCHKLVRSFHDKGSLEK AEQILESLVQFGWVPNSTSVHSIIHKDHDDANSESPGNFSKQVTFGVAC" CDS 24252822..24255887 /locus_tag="TCM_014744" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /protein_id="EOY22622.1" /db_xref="Phytozome:POPTR_0015s11670.1" /db_xref="TAIR:AT5G61990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFK4" /translation="MRLTSKRRLYHFTKTRLSRLKSASFCTSAENDAAAEEIAAILEK KDWKRLLETTSELKNKLNPETVHSILHQSSVRDPKRLFNFFNWAIHQVPNPQNLDSFS FLAIILCNSKLFRDANMVLDKMVQTRRPVQAVLASIIRCYKEYKGNDAGVFEILIDCY KKVGSWNNAVYVFLGAKEGGFLPGLVCCNNFLGDLVKFNKLDLFWKVFDGMVDAKLVP DVYTFTNVINAHCRVGDIEKAKRVILEMEEKGCTPGLVTYNVMIGGLCRAGVVDEALK LKKSMAEKGFAPDAYTYNTLIDGFCREKRFSEAKLMMTEMRRAGLNPNHFAYTALIDG LMKQGNVVEGFRVKDEMVARGIKLNVFTYNALISGVCKAGDLEKAKALFNEMVWIGAE PDAQTFSILIESYSRAKKIDKAYELLNEMKRSNLTPTLYTYSGIINGLCHCGDLERAN HVLDAMVEGGLKPNLVIYTNLIKGHIQKSRFEEARRILDRMMEKGVLPDVICCNTLIS GLCKAQKMDEARSCLVEMVDRGLKPNAHTYGAFIHGYAKAGEIEAVERCFKEMQNYGI APNNVIYSELINSHCKAGNVTEALSTLRCMSEQGVVPDVKTYTVLIHGLATNGRINDA RDVFSQLHGKGIVPDVFTYTSLISGFCKLGDMKAALNLYKEMCQKSIAPNIVTYNTLI GGLCKAGNIEKARKVFNEISQKALAPNTKSYTMIIDGYCKSGNLTQAFQLLDEMPSRG VPPDSFAYCALVDGCCKEGKLEKALSLFYEMVRKGFASTTAFNALIDGLCKSGKPNDA NGLLEDMVDKCITPNHITYTILIDHHCKAGEMKEAENLFLEMQRRNLVPNTVTYTLLL HGYDRLGRRAEMFALFERMAANAVEPDEIIYGLMTNAHLKENNLIGNLKLLDEILVKD VVLDQKWSSLLLDAVCKREEFSEVVKFLDEMAEQGLRLSPVTCHKLVRSFHDKGSLEK AEQILESLVQFGWVPNSTSVHSIIHKDHDDANSESPGNFSKQVTFGVAC" gene complement(24256384..24270264) /locus_tag="TCM_014745" /note="dbxref CacaoGD:Thecc1EG014745" mRNA complement(join(24256384..24256923,24257848..24258094, 24258174..24258339,24259778..24259871,24259944..24260083, 24260790..24261128,24261371..24261457,24261613..24261840, 24261933..24262064,24262193..24262402,24263789..24263830, 24263923..24264018,24264108..24264155,24264282..24264347, 24265307..24265351,24265997..24266059,24267611..24267681, 24268233..24268333,24269012..24269088,24269706..24270264)) /locus_tag="TCM_014745" /product="ARF-GAP domain 1 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G61980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008353t1" /inference="similar to AA sequence:ricco:30147.m014416" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc224t10" CDS complement(join(24256809..24256923,24257848..24258094, 24258174..24258339,24259778..24259871,24259944..24260083, 24260790..24261128,24261371..24261457,24261613..24261840, 24261933..24262064,24262193..24262402,24263789..24263830, 24263923..24264018,24264108..24264155,24264282..24264347, 24265307..24265351,24265997..24266059,24267611..24267681, 24268233..24268333,24269012..24269088,24269706..24269750)) /locus_tag="TCM_014745" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014416; paralog of Thecc1EG008353t1" /codon_start=1 /product="ARF-GAP domain 1 isoform 1" /protein_id="EOY22623.1" /db_xref="TAIR:AT5G61980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FIT8" /translation="MHFSKLDDTPMFRQEIQCLEENAELLRGRCLKFYKGCRKYIEGL GEGYDGDIAFVNALETFGGGHNDPICVAFGGPVMTKFTIALREIGTYKEVLRSQIEHM LNERLLQFVNVDLQDVKDARKRFDKASLIYDQAREKFRSLRKSTRMDVAAAIEEELHT ARTSFEQARFNLVSALSKFEAKKRFEFLEAVSGTMDAHLRFFKQGYELLHQMEPFINQ VLAYAQQSRECSNYEQASLSERMQEHIRQIDLKSKQSCYVCPATADGMRPFARGSQKV IEAVMQSAEKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKPFAWSSAG GSQSAIQRSGPSESGPGLLSRWLSSHYHGGVHDEKSVARHTVNLLTATIKVDADQSDL RFCFRIISPTKIYTLQAENALDQRDWIEKITGVIASLLSFQTPEKCLSAYNMGTADNC SASDCSSLVDSSDAYQTAVGEHTSQNLSSGSHLDISRSLQHQEYCIKSEKPIDILRRV AGNDKCVDCGAPEPDWASLNLGVLICIECSGVHRNLGVHISKIRSLTLDVKVWEPSVL ALFQSLGNIYANSIWEELLHSRSTRTAMPVGSSKSDVHKQLLTMKPSYNDPISVKELF IHAKYAEKAFVSKKQDNQHLLAVAEEVWESVRANDQKAVYRHIVCSGADVNAIHGQAS YCDSLDQPSRYLNSLNKSEDQIEKECSDGCSLLHLACLTTDIGMVELLLQYGANINAS DSRGRTPLHLCVVSGKSSIAKLLLTRGADPHAVDGEGNTALQLASASGIDDNEVLALL TDTHR" mRNA complement(join(<24256897..24256923,24257848..24258094, 24258174..24258339,24259778..24259871,24259944..24260083, 24260790..24261128,24261371..24261457,24261613..24261840, 24261933..24262064,24262193..24262402,24263789..24263830, 24263923..24264018,24264108..24264155,24264282..24264347, 24265307..24265351,24265997..24266059,24267611..24267681, 24268233..24268333,24269706..24270156)) /locus_tag="TCM_014745" /product="ARF-GAP domain 1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025451" /inference="alignment:exonerate- protein:2:TAIR:AT5G61980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008353t1" /inference="similar to AA sequence:ricco:30147.m014416" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc224t4; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc224t10" mRNA complement(join(24256897..24256923,24257848..24258094, 24258174..24258339,24259778..24260083,24260790..24261128, 24261371..24261457,24261613..24261840,24261933..24262064, 24262193..24262402,24263789..24263830,24263923..24264018, 24264108..24264155,24264282..24264347,24265307..24265351, 24265997..24266059,24267611..24267681,24268233..24268333, 24269012..24269088,24269706..24270156)) /locus_tag="TCM_014745" /product="ARF-GAP domain 1 isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT5G61980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008353t1" /inference="similar to AA sequence:ricco:30147.m014416" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc224t6; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc224t10" mRNA complement(join(<24256897..24256923,24257848..24258094, 24258174..24258339,24259778..24259871,24259944..24260083, 24260790..24261128,24261371..24261457,24261613..24261840, 24261933..24262064,24262193..24262402,24263789..24263830, 24263923..24264018,24264108..24264168,24264282..24264347, 24265307..24265351,24265997..24266059,24267611..24267681, 24268233..24268333,24269012..24269088,24269706..24270156)) /locus_tag="TCM_014745" /product="ARF-GAP domain 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025451" /inference="alignment:exonerate- protein:2:TAIR:AT5G61980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008353t1" /inference="similar to AA sequence:ricco:30147.m014416" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc224t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc224t10" CDS complement(join(<24256899..24256923,24257848..24258094, 24258174..24258339,24259778..24259871,24259944..24260083, 24260790..24261128,24261371..24261457,24261613..24261840, 24261933..24262064,24262193..24262402,24263789..24263830, 24263923..24264018,24264108..24264155,24264282..24264347, 24265307..24265351,24265997..24266059,24267611..24267673)) /locus_tag="TCM_014745" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m014416; paralog of Thecc1EG008353t1" /codon_start=1 /product="ARF-GAP domain 1 isoform 4" /protein_id="EOY22626.1" /db_xref="TAIR:AT5G61980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FIT8" /translation="MTKFTIALREIGTYKEVLRSQIEHMLNERLLQFVNVDLQDVKDA RKRFDKASLIYDQAREKFRSLRKSTRMDVAAAIEEELHTARTSFEQARFNLVSALSKF EAKKRFEFLEAVSGTMDAHLRFFKQGYELLHQMEPFINQVLAYAQQSRECSNYEQASL SERMQEHIRQIDLKSKQSCYVCPATADGMRPFARGSQKVIEAVMQSAEKGKVQTIRQG YLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKPFAWSSAGGSQSAIQRSGPSESGPGLL SRWLSSHYHGGVHDEKSVARHTVNLLTATIKVDADQSDLRFCFRIISPTKIYTLQAEN ALDQRDWIEKITGVIASLLSFQTPEKCLSAYNMGTADNCSASDCSSLVDSSDAYQTAV GEHTSQNLSSGSHLDISRSLQHQEYCIKSEKPIDILRRVAGNDKCVDCGAPEPDWASL NLGVLICIECSGVHRNLGVHISKIRSLTLDVKVWEPSVLALFQSLGNIYANSIWEELL HSRSTRTAMPVGSSKSDVHKQLLTMKPSYNDPISVKELFIHAKYAEKAFVSKKQDNQH LLAVAEEVWESVRANDQKAVYRHIVCSGADVNAIHGQASYCDSLDQPSRYLNSLNKSE DQIEKECSDGCSLLHLACLTTDIGMVELLLQYGANINASDSRGRTPLHLCVVSGKSSI AKLLLTRGADPHAVD" CDS complement(join(<24256899..24256923,24257848..24258094, 24258174..24258339,24259778..24259871,24259944..24260083, 24260790..24261128,24261371..24261457,24261613..24261840, 24261933..24262064,24262193..24262402,24263789..24263830, 24263923..24263952)) /locus_tag="TCM_014745" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014416; paralog of Thecc1EG008353t1" /codon_start=1 /product="ARF-GAP domain 1 isoform 2" /protein_id="EOY22624.1" /db_xref="TAIR:AT5G61980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FIT8" /translation="MDAHLRFFKQGYELLHQMEPFINQVLAYAQQSRECSNYEQASLS ERMQEHIRQIDLKSKQSCYVCPATADGMRPFARGSQKVIEAVMQSAEKGKVQTIRQGY LSKRSSNLRGDWKRRFFVLDSRGMLYYYRKPFAWSSAGGSQSAIQRSGPSESGPGLLS RWLSSHYHGGVHDEKSVARHTVNLLTATIKVDADQSDLRFCFRIISPTKIYTLQAENA LDQRDWIEKITGVIASLLSFQTPEKCLSAYNMGTADNCSASDCSSLVDSSDAYQTAVG EHTSQNLSSGSHLDISRSLQHQEYCIKSEKPIDILRRVAGNDKCVDCGAPEPDWASLN LGVLICIECSGVHRNLGVHISKIRSLTLDVKVWEPSVLALFQSLGNIYANSIWEELLH SRSTRTAMPVGSSKSDVHKQLLTMKPSYNDPISVKELFIHAKYAEKAFVSKKQDNQHL LAVAEEVWESVRANDQKAVYRHIVCSGADVNAIHGQASYCDSLDQPSRYLNSLNKSED QIEKECSDGCSLLHLACLTTDIGMVELLLQYGANINASDSRGRTPLHLCVVSGKSSIA KLLLTRGADPHAVD" mobile_element 24258469..24258560 /note="source:CACAO_M_E69780_F2_scaffold_9 1561 1652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24258561..24258576 /note="source:scaffold_1_CACTA_0029 7138 7245" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(24259940..24260083,24260790..24261128, 24261371..24261457,24261613..24261840,24261933..24262064, 24262193..24262402,24263789..24263830,24263923..24264018, 24264108..24264155,24264282..24264347,24265307..24265351, 24265997..24266059,24267611..24267681,24268233..24268333, 24269012..24269088,24269706..24269750)) /locus_tag="TCM_014745" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014416; paralog of Thecc1EG008353t1" /codon_start=1 /product="ARF-GAP domain 1 isoform 3" /protein_id="EOY22625.1" /db_xref="TAIR:AT5G61980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FIT8" /translation="MHFSKLDDTPMFRQEIQCLEENAELLRGRCLKFYKGCRKYIEGL GEGYDGDIAFVNALETFGGGHNDPICVAFGGPVMTKFTIALREIGTYKEVLRSQIEHM LNERLLQFVNVDLQDVKDARKRFDKASLIYDQAREKFRSLRKSTRMDVAAAIEEELHT ARTSFEQARFNLVSALSKFEAKKRFEFLEAVSGTMDAHLRFFKQGYELLHQMEPFINQ VLAYAQQSRECSNYEQASLSERMQEHIRQIDLKSKQSCYVCPATADGMRPFARGSQKV IEAVMQSAEKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKPFAWSSAG GSQSAIQRSGPSESGPGLLSRWLSSHYHGGVHDEKSVARHTVNLLTATIKVDADQSDL RFCFRIISPTKIYTLQAENALDQRDWIEKITGVIASLLSFQTPEKCLSAYNMGTADNC SASDCSSLVDSSDAYQTAVGEHTSQNLSSGSHLDISRSLQHQEYCIKSEKPIDILRRV AGNDKCVDCGAPEPDWASLNLGVLICIECSGVHRNLGVHISKIRSLTLDVKVWEPSVL ALFQSLGNIYANSIWEELLHSRSTRTAMPVG" mobile_element 24262137..24262204 /note="source:CACAO_M_E1021_F7_scaffold_1 7172 7247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24265770..24265815 /note="source:CACAO_M_S_E33129_F347_scaffold_4 447 492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24265783..24265841) /note="source:scaffold_8_CACTA_0850 10814 10872" /mobile_element_type="transposon:TIR/CACTA" gene 24270548..24272001 /locus_tag="TCM_014746" /note="dbxref CacaoGD:Thecc1EG014746" mRNA join(24270548..24270690,24270806..24270884, 24270966..24272001) /locus_tag="TCM_014746" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s33370.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5689t2" CDS join(24270667..24270690,24270806..24270884, 24270966..24271714) /locus_tag="TCM_014746" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22627.1" /translation="MEHRQALPTCTLKVNINCCTMCRLKVKEKLQKIKGVESIVYDSD GVVTVSGKVNPMTIVKKLEKWGKYAELLSFRRSPKQDVQGSTSCSNKGVDNSDHHGSH SKMEKDCCCRCDAVSDSDDDHDHGQDDNGEVPAAKKSNASITCQHPDPTISKQSRKGK VKKRFIGLFSKNIGGAKKNLDETKSRVSTIGKPSTMDRPSKWRFPWTPMPKYGGPMPY NRPFESYPPPVTGRPAAPPYHPFGLMRPPPSPAVPPPYGFFNSRPPPKVNPMIHYTSY ADNYSYW" gene 24272471..24276289 /locus_tag="TCM_014747" /note="dbxref CacaoGD:Thecc1EG014747" mRNA join(24272471..24272637,24273513..24276289) /locus_tag="TCM_014747" /product="DNAJ heat shock N-terminal domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032991001" /inference="similar to AA sequence:Phytozome:GSVIVT01032991001" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6593t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc4139t1" CDS 24273590..24275731 /locus_tag="TCM_014747" /codon_start=1 /product="DNAJ heat shock N-terminal domain-containing protein, putative" /protein_id="EOY22628.1" /db_xref="Phytozome:GSVIVT01032991001" /translation="MKHTIKVGTSKEMNQKVLEALQEKGVAEKMMTQKGYASAREHLL RAKELSPGIDNIESMLTVCDILSAASVKFPAYGIDYYWILQLTPPSTQSVIGKRHQKL VSMLQPIVRTFPGAELALKHIQDAFLTLSNNETRSKFDLKRGTGCEDYRSFKFQAPCS QSISDRETISTTQTSSMDSHRNYIDGSKKTAETILTAVGNSVEKQSSSTTFENQHGKI GMSSDGISSSTNSLPTILEGIVTCQDYYNFEDDRKLYYLEPGQIWASHYRAKLQHNYR YAQITINSRSAFCVTWLKPIPTSPSERRWCDKGLPVACGSFELVPETKEDVSWQIISS YKCSWPQCVIGDQFEIYPRKGEIWALYKDWDLDDWSYDPDAVKGCRFELVEVLSEFSK YSGADAMCLVKVNGFKYVFKRQIMGGNPITFHISPSNMYMFSHNVPAYRFRGGEIDNI ADGMFELDQMALPDYMIQDMDSQQSPNEKRSLLPRPTSLSNQNLENKNLKPGLTQKHL ATGQVWAVYCGKDLMPRQYIRINGIISESQVCGTELEPLPILDHEIHWQKENLPMACG VFKVSGTSVNLDMSKFSYLVQCQQSTCESFYWIYPQKGEIWAMYKNWNAKWNRSNYEN YQCQIVQVLSGFEEDGVKVARLGEVKGYLTFFRRIQYDGFDLTHTVRKEEKLSFSHRV PAFRVPGIGKYGIPEDTWHLEPDGLPPKRGM" gene complement(24275932..24283596) /locus_tag="TCM_014748" /note="dbxref CacaoGD:Thecc1EG014748" mRNA complement(join(24275932..24277204,24277679..24277828, 24278082..24278211,24278756..24278865,24278968..24279174, 24279395..24279522,24280272..24280383,24281110..24281305, 24281496..24281581,24282086..24282281,24282506..24282616, 24282736..24282802,24282941..24283036,24283150..24283212)) /locus_tag="TCM_014748" /product="Signal recognition particle-related / SRP-related isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014413" /inference="similar to AA sequence:ricco:30147.m014413" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1150t2; alternateUTRof:Thecc1EG014748t1; inference alignment:Newbler:10:TSA:cgbaL_g11816t00001" mRNA complement(join(24276292..24276322,24276562..24277204, 24277679..24277828,24278082..24278211,24278756..24278865, 24278968..24279174,24279395..24279522,24280272..24280383, 24281110..24281305,24281496..24281581,24282086..24282281, 24282506..24282616,24282736..24282802,24282941..24283036, 24283201..24283596)) /locus_tag="TCM_014748" /product="Signal recognition particle-related / SRP-related isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014413" /inference="similar to AA sequence:ricco:30147.m014413" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11816t00001" CDS complement(join(24276983..24277204,24277679..24277828, 24278082..24278211,24278756..24278865,24278968..24279174, 24279395..24279522,24280272..24280383,24281110..24281305, 24281496..24281581,24282086..24282281,24282506..24282616, 24282736..24282802,24282941..24283031)) /locus_tag="TCM_014748" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014413" /codon_start=1 /product="Signal recognition particle-related / SRP-related isoform 1" /protein_id="EOY22629.1" /db_xref="TAIR:AT5G61970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3Z0" /translation="MAKVNEATAMEIDDPNSNVSDQISPKYSVHVLQLLKSAQMQHGL RHGDYARYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERA WSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWADLFSHLCSVKGDSRTSLEAEAYASY MKGNLLFEQDQNWDTALRNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLH KIGESNLQASELLQIGEMEGPALDLFKAKLEAVMAEARSQQAASLTEFYWLGNRFPIT NAKTRVAILKAQELEKDLHGPSADSLSAEKRLATFDKIFTAYHEARSCIRSDLASAGN AENVKDDLNGLDKAVSAVLGQRTIERNQLLVSIAKSKLTRRRDDKNEKVTKPEELVRL YDLLLQNTADLSDLVSSGRDRKPEEVTFAEECQLKSLAFRAERCFYLARSYSLAGKRT EAYSLYCRARSLAENALQKFQSHSNIEQMMIKELKTLYDECRSYSCIEHATGIIEEEK APENLSKKISTISLNGAHKKVEKYLLEKLDLYESAVSDSNVKALPRIEPFPPAFQSIP RNPIVLDLAYNAIDFPSLENRMKKDKKGFISRLWR" CDS complement(join(24276983..24277204,24277679..24277828, 24278082..24278211,24278756..24278865,24278968..24279174, 24279395..24279522,24280272..24280383,24281110..24281305, 24281496..24281581,24282086..24282281,24282506..24282616, 24282736..24282802,24282941..24283031)) /locus_tag="TCM_014748" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014413" /codon_start=1 /product="Signal recognition particle-related / SRP-related isoform 1" /protein_id="EOY22630.1" /db_xref="TAIR:AT5G61970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3Z0" /translation="MAKVNEATAMEIDDPNSNVSDQISPKYSVHVLQLLKSAQMQHGL RHGDYARYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERA WSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWADLFSHLCSVKGDSRTSLEAEAYASY MKGNLLFEQDQNWDTALRNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLH KIGESNLQASELLQIGEMEGPALDLFKAKLEAVMAEARSQQAASLTEFYWLGNRFPIT NAKTRVAILKAQELEKDLHGPSADSLSAEKRLATFDKIFTAYHEARSCIRSDLASAGN AENVKDDLNGLDKAVSAVLGQRTIERNQLLVSIAKSKLTRRRDDKNEKVTKPEELVRL YDLLLQNTADLSDLVSSGRDRKPEEVTFAEECQLKSLAFRAERCFYLARSYSLAGKRT EAYSLYCRARSLAENALQKFQSHSNIEQMMIKELKTLYDECRSYSCIEHATGIIEEEK APENLSKKISTISLNGAHKKVEKYLLEKLDLYESAVSDSNVKALPRIEPFPPAFQSIP RNPIVLDLAYNAIDFPSLENRMKKDKKGFISRLWR" mRNA complement(join(24277677..24277828,24278038..24278211, 24278756..24278865,24278968..24279174,24279395..24279522, 24280272..24280383,24281110..24281305,24281496..24281581, 24282086..24282281,24282506..24282616,24282736..24282802, 24282941..24283036,24283201..24283287)) /locus_tag="TCM_014748" /product="Signal recognition particle-related / SRP-related isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014413" /inference="similar to AA sequence:Phytozome:POPTR_0015s11690.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc900t2; inference alignment:Newbler:10:TSA:cgbaL_g11816t00001" mRNA complement(join(24277806..24277828,24278082..24278211, 24278756..24278858,24278968..24279174,24279395..24279522, 24280272..24280383,24281110..24281305,24281496..24281581, 24282086..24282281,24282506..24282616,24282736..24282802, 24282941..24283036,24283201..24283287)) /locus_tag="TCM_014748" /product="Signal recognition particle-related / SRP-related isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m014413" /inference="similar to AA sequence:Phytozome:POPTR_0015s11690.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc900t1; inference alignment:Newbler:10:TSA:cgbaL_g11816t00001" CDS complement(join(24277828,24278038..24278211, 24278756..24278865,24278968..24279174,24279395..24279522, 24280272..24280383,24281110..24281305,24281496..24281581, 24282086..24282281,24282506..24282616,24282736..24282802, 24282941..24283031)) /locus_tag="TCM_014748" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Signal recognition particle-related / SRP-related isoform 3" /protein_id="EOY22631.1" /db_xref="Phytozome:POPTR_0015s11690.1" /db_xref="TAIR:AT5G61970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3Z0" /translation="MAKVNEATAMEIDDPNSNVSDQISPKYSVHVLQLLKSAQMQHGL RHGDYARYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERA WSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWADLFSHLCSVKGDSRTSLEAEAYASY MKGNLLFEQDQNWDTALRNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLH KIGESNLQASELLQIGEMEGPALDLFKAKLEAVMAEARSQQAASLTEFYWLGNRFPIT NAKTRVAILKAQELEKDLHGPSADSLSAEKRLATFDKIFTAYHEARSCIRSDLASAGN AENVKDDLNGLDKAVSAVLGQRTIERNQLLVSIAKSKLTRRRDDKNEKVTKPEELVRL YDLLLQNTADLSDLVSSGRDRKPEEVTFAEECQLKSLAFRAERCFYLARSYSLAGKRT EAYSLYCRARSLAENALQKFQSHSNIEQVSTFIKGFAFPTIF" CDS complement(join(24278841..24278858,24278968..24279174, 24279395..24279522,24280272..24280383,24281110..24281305, 24281496..24281581,24282086..24282281,24282506..24282616, 24282736..24282802,24282941..24283031)) /locus_tag="TCM_014748" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Signal recognition particle-related / SRP-related isoform 4" /protein_id="EOY22632.1" /db_xref="Phytozome:POPTR_0015s11690.1" /db_xref="TAIR:AT5G61970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3Z0" /translation="MAKVNEATAMEIDDPNSNVSDQISPKYSVHVLQLLKSAQMQHGL RHGDYARYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERA WSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWADLFSHLCSVKGDSRTSLEAEAYASY MKGNLLFEQDQNWDTALRNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLH KIGESNLQASELLQIGEMEGPALDLFKAKLEAVMAEARSQQAASLTEFYWLGNRFPIT NAKTRVAILKAQELEKDLHGPSADSLSAEKRLATFDKIFTAYHEARSCIRSDLASAGN AENVKDDLNGLDKAVSAVLGQRTIERNQLLVSIAKSKLTRRRDDKNEKVTKPEELVRL YDLLLQLIYLI" gene complement(24283918..24295999) /locus_tag="TCM_014749" /note="dbxref CacaoGD:Thecc1EG014749" mRNA complement(join(24283918..24284909,24284989..24285057, 24285459..24285506,24285809..24285904,24285985..24286095, 24286188..24286272,24286415..24286527,24287056..24287121, 24287239..24287358,24287476..24287523,24288130..24288201, 24288286..24288345,24288502..24288567,24289103..24289248, 24289358..24289577,24289985..24290041,24290156..24290221, 24291126..24291215,24291302..24291469,24291561..24291654, 24291752..24291852,24293166..24293279,24293853..24293924, 24294012..24294095,24294215..24294334,24294492..24294666, 24294794..24294882,24294988..24295071,24295172..24295385, 24295589..24295999)) /locus_tag="TCM_014749" /product="Glycosyl hydrolase family 38 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10830.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046752t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10830.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5788t5" mRNA complement(join(24283918..24284909,24284989..24285057, 24285809..24285904,24285985..24286095,24286188..24286272, 24286415..24286527,24287056..24287121,24287239..24287358, 24287476..24287523,24288130..24288201,24288286..24288345, 24288502..24288567,24289103..24289248,24289358..24289577, 24289985..24290041,24290156..24290221,24291126..24291215, 24291302..24291469,24291561..24291654,24291752..24291852, 24293166..24293279,24293853..24293924,24294012..24294095, 24294215..24294334,24294492..24294666,24294794..24294882, 24294988..24295071,24295172..24295587)) /locus_tag="TCM_014749" /product="Glycosyl hydrolase family 38 protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10830.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046752t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10830.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b014247t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5788t5" mRNA complement(join(24284191..24284909,24284989..24285484, 24287239..24287358,24287476..24287523,24288130..24288201, 24288286..24288345,24288502..24288567,24289103..24289248, 24289358..24289577,24289985..24290041,24290156..24290221, 24291126..24291215,24291302..24291469,24291561..24291654, 24291752..24291852,24293166..24293279,24293853..24293924, 24294012..24294095,24294215..24294334,24294492..24294666, 24294794..24294882,24294988..24295071,24295172..24295549)) /locus_tag="TCM_014749" /product="Glycosyl hydrolase family 38 protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10830.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046752t1" /inference="similar to AA sequence:ricco:30147.m014412" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc582t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5788t5" mRNA complement(join(24284191..24284909,24284989..24285057, 24285459..24285506,24285809..24285904,24285985..24286095, 24286188..24286213,24287239..24287358,24287476..24287523, 24288130..24288201,24288286..24288345,24288502..24288567, 24289103..24289248,24289358..24289577,24289985..24290041, 24290156..24290221,24291126..24291215,24291302..24291469, 24291561..24291654,24291752..24291852,24293166..24293279, 24293853..24293924,24294012..24294095,24294215..24294334, 24294492..24294666,24294794..24294882,24294988..24295071, 24295172..24295549)) /locus_tag="TCM_014749" /product="Glycosyl hydrolase family 38 protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10830.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046752t1" /inference="similar to AA sequence:ricco:30147.m014412" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc582t14; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5788t5" mRNA complement(join(24284191..24284909,24284989..24285057, 24285459..24285506,24285809..24285904,24285985..24286095, 24286188..24286272,24286415..24286527,24287239..24287358, 24287476..24287523,24288130..24288201,24288286..24288345, 24288502..24288567,24289103..24289248,24289358..24289577, 24289985..24290041,24290156..24290221,24291126..24291215, 24291302..24291469,24291561..24291654,24291752..24291852, 24293166..24293279,24293853..24293924,24294012..24294095, 24294215..24294334,24294492..24294666,24294794..24294882, 24294988..24295071,24295172..24295490)) /locus_tag="TCM_014749" /product="Glycosyl hydrolase family 38 protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10830.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046752t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10830.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc576t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5788t5" CDS complement(join(24284712..24284909,24284989..24285057, 24285459..24285506,24285809..24285904,24285985..24286095, 24286188..24286272,24286415..24286527,24287239..24287358, 24287476..24287523,24288130..24288201,24288286..24288345, 24288502..24288567,24289103..24289248,24289358..24289577, 24289985..24290041,24290156..24290221,24291126..24291215, 24291302..24291469,24291561..24291654,24291752..24291852, 24293166..24293279,24293853..24293924,24294012..24294095, 24294215..24294334,24294492..24294666,24294794..24294882, 24294988..24295071,24295172..24295372)) /locus_tag="TCM_014749" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG046752t1" /codon_start=1 /product="Glycosyl hydrolase family 38 protein isoform 3" /protein_id="EOY22635.1" /db_xref="Phytozome:POPTR_0012s10830.1" /db_xref="TAIR:AT5G13980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKW9" /translation="MAIGAWILIALMCVFWCEVESKYMVYNTTSKIAPGKLNVHLVAH THDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSIVPALLADKNRKFIYVEQAFFQRWW RDQSEAVQETVKQLINSGQLELINGGMCMHDEAATHYIDMIDQTTLGHRFIKSEFNVT PRIGWQIDPFGHSAVQAYLLSAEVGFDSLFFARIDYQDRAKRKDEKSLEVVWRGSKSL GSSSQIFAGVFPENYDPPSNFNYEVNDDSPIVQDNMELFDYNVPERVNEFVAAALSQA NITRTNHVMWTMGTDFKYQYAHTWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKYAT NKAWPLKTDDYFPYADRINAYWTGYFTSRPALKGYVRTMSSYYLAARQLEFFKGRSKV GPNTDSLADALAIAQHHDAVSGTSKQHVADDYAKRLSIGYEETAKVVESSLASMTRSS SKADSGSPVTEFHQCLLLNISYCPPSEVDLSNGKNLVVVVYNPLGWKREDVIRIPVID ENVIVKDSGGKEIESQLLPLQNASLAIRNYYSVAYLGKFPSATPKYWLAFSASAPPIG FNTYFISRGKRPVIATASKSHVVYSSEEKRSDVIEVGPGDVKLVYSKNQGKLIRYINS RTMVKESVRQSYSFYSGDDGSVDEQASGAYIFRPNHTYHTRSDGQASFTVLRGPLLDE VHQRINSWIYQITRVYKGKEYAEFEFTVGPIPIDDGIGKEVVTQISTHMKTNKTFYTD SSGRDFIERIDLGLYIKDDSKELSVLVDRSVGGASIKDGQLELMLHRRLLHDDNRGVA EALNETVCVQNKCSGLTIVGKYYLRIDPLGEAAKWRRSFGQEIYSPFLLAFTEQDGDE WANSRILSFSGMDPSYVLPDNVAMITLQELDDGKVLLRLAHLYEIGEDKDLSVMASVQ VKKVFAHKKINEVTEMSLSANQGRAEMEKKRLVWKVEGSSGESPKVVRGGPVDPSILV VELAPMEIRTFVIEFH" CDS complement(join(24284712..24284909,24284989..24285057, 24285809..24285904,24285985..24286095,24286188..24286272, 24286415..24286527,24287056..24287121,24287239..24287358, 24287476..24287523,24288130..24288201,24288286..24288345, 24288502..24288567,24289103..24289248,24289358..24289577, 24289985..24290041,24290156..24290221,24291126..24291215, 24291302..24291469,24291561..24291654,24291752..24291852, 24293166..24293279,24293853..24293924,24294012..24294095, 24294215..24294334,24294492..24294666,24294794..24294882, 24294988..24295071,24295172..24295372)) /locus_tag="TCM_014749" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046752t1" /codon_start=1 /product="Glycosyl hydrolase family 38 protein isoform 2" /protein_id="EOY22634.1" /db_xref="Phytozome:POPTR_0012s10830.1" /db_xref="TAIR:AT5G13980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKW9" /translation="MAIGAWILIALMCVFWCEVESKYMVYNTTSKIAPGKLNVHLVAH THDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSIVPALLADKNRKFIYVEQAFFQRWW RDQSEAVQETVKQLINSGQLELINGGMCMHDEAATHYIDMIDQTTLGHRFIKSEFNVT PRIGWQIDPFGHSAVQAYLLSAEVGFDSLFFARIDYQDRAKRKDEKSLEVVWRGSKSL GSSSQIFAGVFPENYDPPSNFNYEVNDDSPIVQDNMELFDYNVPERVNEFVAAALSQA NITRTNHVMWTMGTDFKYQYAHTWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKYAT NKAWPLKTDDYFPYADRINAYWTGYFTSRPALKGYVRTMSSYYLAARQLEFFKGRSKV GPNTDSLADALAIAQHHDAVSGTSKQHVADDYAKRLSIGYEETAKVVESSLASMTRSS SKADSGSPVTEFHQCLLLNISYCPPSEVDLSNGKNLVVVVYNPLGWKREDVIRIPVID ENVIVKDSGGKEIESQLLPLQNASLAIRNYYSVAYLGKFPSATPKYWLAFSASAPPIG FNTYFISRGKRPVIATASKSHVVYSSEEKRSDVIEVGPGDVKLVYSKNQGKLIRYINS RTMVKESVRQSYSFYSGDDGSVDEQASGAYIFRPNHTYHTRSDGQASFTVLRGPLLDE VHQRINSWIYQITRVYKGKEYAEFEFTVGPIPIDDGIGKEVVTQISTHMKTNKTFYTD SSGRDFIERIRDYRKDWNLELNQPVAGNYYPIDLGLYIKDDSKELSVLVDRSVGGASI KDGQLELMLHRRLLHDDNRGVAEALNETVCVQNKCSGLTIVGKYYLRIDPLGEAAKWR RSFGQEIYSPFLLAFTEQDGDEWANSRILSFSGMDPSYVLPDNVAMITLQIGEDKDLS VMASVQVKKVFAHKKINEVTEMSLSANQGRAEMEKKRLVWKVEGSSGESPKVVRGGPV DPSILVVELAPMEIRTFVIEFH" CDS complement(join(24284712..24284909,24284989..24285057, 24285459..24285506,24285809..24285904,24285985..24286095, 24286188..24286272,24286415..24286527,24287056..24287121, 24287239..24287358,24287476..24287523,24288130..24288201, 24288286..24288345,24288502..24288567,24289103..24289248, 24289358..24289577,24289985..24290041,24290156..24290221, 24291126..24291215,24291302..24291469,24291561..24291654, 24291752..24291852,24293166..24293279,24293853..24293924, 24294012..24294095,24294215..24294334,24294492..24294666, 24294794..24294882,24294988..24295071,24295172..24295372)) /locus_tag="TCM_014749" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046752t1" /codon_start=1 /product="Glycosyl hydrolase family 38 protein isoform 1" /protein_id="EOY22633.1" /db_xref="Phytozome:POPTR_0012s10830.1" /db_xref="TAIR:AT5G13980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKW9" /translation="MAIGAWILIALMCVFWCEVESKYMVYNTTSKIAPGKLNVHLVAH THDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSIVPALLADKNRKFIYVEQAFFQRWW RDQSEAVQETVKQLINSGQLELINGGMCMHDEAATHYIDMIDQTTLGHRFIKSEFNVT PRIGWQIDPFGHSAVQAYLLSAEVGFDSLFFARIDYQDRAKRKDEKSLEVVWRGSKSL GSSSQIFAGVFPENYDPPSNFNYEVNDDSPIVQDNMELFDYNVPERVNEFVAAALSQA NITRTNHVMWTMGTDFKYQYAHTWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKYAT NKAWPLKTDDYFPYADRINAYWTGYFTSRPALKGYVRTMSSYYLAARQLEFFKGRSKV GPNTDSLADALAIAQHHDAVSGTSKQHVADDYAKRLSIGYEETAKVVESSLASMTRSS SKADSGSPVTEFHQCLLLNISYCPPSEVDLSNGKNLVVVVYNPLGWKREDVIRIPVID ENVIVKDSGGKEIESQLLPLQNASLAIRNYYSVAYLGKFPSATPKYWLAFSASAPPIG FNTYFISRGKRPVIATASKSHVVYSSEEKRSDVIEVGPGDVKLVYSKNQGKLIRYINS RTMVKESVRQSYSFYSGDDGSVDEQASGAYIFRPNHTYHTRSDGQASFTVLRGPLLDE VHQRINSWIYQITRVYKGKEYAEFEFTVGPIPIDDGIGKEVVTQISTHMKTNKTFYTD SSGRDFIERIRDYRKDWNLELNQPVAGNYYPIDLGLYIKDDSKELSVLVDRSVGGASI KDGQLELMLHRRLLHDDNRGVAEALNETVCVQNKCSGLTIVGKYYLRIDPLGEAAKWR RSFGQEIYSPFLLAFTEQDGDEWANSRILSFSGMDPSYVLPDNVAMITLQELDDGKVL LRLAHLYEIGEDKDLSVMASVQVKKVFAHKKINEVTEMSLSANQGRAEMEKKRLVWKV EGSSGESPKVVRGGPVDPSILVVELAPMEIRTFVIEFH" mobile_element complement(24285209..24285272) /note="source:scaffold_9_CACTA_0929 10068 10134" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(24285434..24285484,24287239..24287358, 24287476..24287523,24288130..24288201,24288286..24288345, 24288502..24288567,24289103..24289248,24289358..24289577, 24289985..24290041,24290156..24290221,24291126..24291215, 24291302..24291469,24291561..24291654,24291752..24291852, 24293166..24293279,24293853..24293924,24294012..24294095, 24294215..24294334,24294492..24294666,24294794..24294882, 24294988..24295071,24295172..24295372)) /locus_tag="TCM_014749" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30147.m014412; paralog of Thecc1EG046752t1" /codon_start=1 /product="Glycosyl hydrolase family 38 protein isoform 5" /protein_id="EOY22637.1" /db_xref="TAIR:AT5G13980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKW9" /translation="MAIGAWILIALMCVFWCEVESKYMVYNTTSKIAPGKLNVHLVAH THDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSIVPALLADKNRKFIYVEQAFFQRWW RDQSEAVQETVKQLINSGQLELINGGMCMHDEAATHYIDMIDQTTLGHRFIKSEFNVT PRIGWQIDPFGHSAVQAYLLSAEVGFDSLFFARIDYQDRAKRKDEKSLEVVWRGSKSL GSSSQIFAGVFPENYDPPSNFNYEVNDDSPIVQDNMELFDYNVPERVNEFVAAALSQA NITRTNHVMWTMGTDFKYQYAHTWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKYAT NKAWPLKTDDYFPYADRINAYWTGYFTSRPALKGYVRTMSSYYLAARQLEFFKGRSKV GPNTDSLADALAIAQHHDAVSGTSKQHVADDYAKRLSIGYEETAKVVESSLASMTRSS SKADSGSPVTEFHQCLLLNISYCPPSEVDLSNGKNLVVVVYNPLGWKREDVIRIPVID ENVIVKDSGGKEIESQLLPLQNASLAIRNYYSVAYLGKFPSATPKYWLAFSASAPPIG FNTYFISRGKRPVIATASKSHVVYSSEEKRSDVIEVGPGDVKLVYSKNQGKLIRYINS RTMVKESVRQSYSFYSGDDGSVDEQASGAYIFRPNHTYHTRSDGQASFTVLRGPLLDE VHQRINSWIYQITRVYKGKEYAEFEFTVGPIPIDDGIGKEVVTQISTHMKTNKTFYTD SSGRDFIERFFGWHTCTRLVFCLMY" CDS complement(join(24286190..24286213,24287239..24287358, 24287476..24287523,24288130..24288201,24288286..24288345, 24288502..24288567,24289103..24289248,24289358..24289577, 24289985..24290041,24290156..24290221,24291126..24291215, 24291302..24291469,24291561..24291654,24291752..24291852, 24293166..24293279,24293853..24293924,24294012..24294095, 24294215..24294334,24294492..24294666,24294794..24294882, 24294988..24295071,24295172..24295372)) /locus_tag="TCM_014749" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m014412; paralog of Thecc1EG046752t1" /codon_start=1 /product="Glycosyl hydrolase family 38 protein isoform 4" /protein_id="EOY22636.1" /db_xref="TAIR:AT5G13980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKW9" /translation="MAIGAWILIALMCVFWCEVESKYMVYNTTSKIAPGKLNVHLVAH THDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSIVPALLADKNRKFIYVEQAFFQRWW RDQSEAVQETVKQLINSGQLELINGGMCMHDEAATHYIDMIDQTTLGHRFIKSEFNVT PRIGWQIDPFGHSAVQAYLLSAEVGFDSLFFARIDYQDRAKRKDEKSLEVVWRGSKSL GSSSQIFAGVFPENYDPPSNFNYEVNDDSPIVQDNMELFDYNVPERVNEFVAAALSQA NITRTNHVMWTMGTDFKYQYAHTWFRQMDKFIHYVNQDGRVNALYSTPSIYTDAKYAT NKAWPLKTDDYFPYADRINAYWTGYFTSRPALKGYVRTMSSYYLAARQLEFFKGRSKV GPNTDSLADALAIAQHHDAVSGTSKQHVADDYAKRLSIGYEETAKVVESSLASMTRSS SKADSGSPVTEFHQCLLLNISYCPPSEVDLSNGKNLVVVVYNPLGWKREDVIRIPVID ENVIVKDSGGKEIESQLLPLQNASLAIRNYYSVAYLGKFPSATPKYWLAFSASAPPIG FNTYFISRGKRPVIATASKSHVVYSSEEKRSDVIEVGPGDVKLVYSKNQGKLIRYINS RTMVKESVRQSYSFYSGDDGSVDEQASGAYIFRPNHTYHTRSDGQASFTVLRGPLLDE VHQRINSWIYQITRVYKGKEYAEFEFTVGPIPIDDGIGKEVVTQISTHMKTNKTFYTD SSGRDFIERFKINAVD" mobile_element 24293522..24293624 /note="source:scaffold_10_CACTA_0137 6927 7013" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24293538..24293634) /note="source:CACAO_Again_on_E207_scaffold_9 309 405" /mobile_element_type="transposon:TIR/hAT" mobile_element 24296087..24296196 /note="source:scaffold_5_CACTA_0580 10249 10363" /mobile_element_type="transposon:TIR/CACTA" gene 24296356..24303407 /locus_tag="TCM_014750" /note="dbxref CacaoGD:Thecc1EG014750" mRNA join(24296356..24297159,24297422..24298217) /locus_tag="TCM_014750" /product="Magnesium-protoporphyrin IX methyltransferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10840.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10840.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc296t7" CDS join(24296575..24297159,24297422..24297823) /locus_tag="TCM_014750" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Magnesium-protoporphyrin IX methyltransferase isoform 1" /protein_id="EOY22638.1" /db_xref="Phytozome:POPTR_0012s10840.1" /db_xref="TAIR:AT4G25080.5" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DF98" /translation="MAYSASLSSHIPFHTNSRFCAFPSKLPNKHKTTPFRTTITTTPI PSLFTAASVTDLSAVEGTTIALIGGGSVAALAAVLSLADPERRRRLQAEEVGGGDKEV VKNYFNNSGFQRWKKIYGETDDVNKVQLDIRLGHSKTVENVIKILTDEGSLKGVTVCD AGCGTGCLAIPLAKEGAVVSASDISAAMVAEAEKQAKEQLVVGNGGIAPVMPKFEVKD LESLDGKYDTMVCLDVLIHYPQSKADGMIAHLASLADKRLILSFAPKTFYYDLLKRIG ELFPGPSKATRAYLHAEADVERALNKVGWKIRKRGLITTQFYFARLIEAVPA" mRNA join(<24296630..24297159,24297422..24297833, 24302600..24302695,24302935..24303407) /locus_tag="TCM_014750" /product="Magnesium-protoporphyrin IX methyltransferase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10840.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10840.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc296t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc296t7" CDS join(<24296632..24297159,24297422..24297823) /locus_tag="TCM_014750" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Magnesium-protoporphyrin IX methyltransferase isoform 2" /protein_id="EOY22639.1" /db_xref="Phytozome:POPTR_0012s10840.1" /db_xref="TAIR:AT4G25080.5" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DF98" /translation="CAFPSKLPNKHKTTPFRTTITTTPIPSLFTAASVTDLSAVEGTT IALIGGGSVAALAAVLSLADPERRRRLQAEEVGGGDKEVVKNYFNNSGFQRWKKIYGE TDDVNKVQLDIRLGHSKTVENVIKILTDEGSLKGVTVCDAGCGTGCLAIPLAKEGAVV SASDISAAMVAEAEKQAKEQLVVGNGGIAPVMPKFEVKDLESLDGKYDTMVCLDVLIH YPQSKADGMIAHLASLADKRLILSFAPKTFYYDLLKRIGELFPGPSKATRAYLHAEAD VERALNKVGWKIRKRGLITTQFYFARLIEAVPA" gene complement(24298389..24300233) /locus_tag="TCM_014751" /note="dbxref CacaoGD:Thecc1EG014751" mRNA complement(join(24298389..24299041,24299265..24300233)) /locus_tag="TCM_014751" /product="Homeodomain-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G33550.1" /inference="similar to AA sequence:Phytozome:GSVIVT01008644001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2069t1" CDS complement(join(24298767..24299041,24299265..24299940)) /locus_tag="TCM_014751" /codon_start=1 /product="Homeodomain-like superfamily protein, putative" /protein_id="EOY22640.1" /db_xref="Phytozome:GSVIVT01008644001" /db_xref="TAIR:AT2G33550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFK7" /translation="MTGPDSINMQENASSQLDEAKERPFHATDCRTNTRHARWTKQET IVLIQAKLAVENRARARNTPFSIFLSDQNEPKWDSVSSYCKQHGVSREPAQCQKRWSN LLGDFRKIKTWESQKKKEAESFWTMRSNSRRERKLPGLFDREVYDILDGRGFPMAATP LAHVTVMTEIDSGSGDQVAKAAATAEEEQKNENEEADEEIGQENEKETIAMRSPAKTV NTLSPISGEAKEKYPGSTARTGSMIQEGLKRRRLSIDGSEDINWAKVLERNSNMLSSQ LESQNINYQLDRDQRKEQADSLVAALNKLTDVLLRIVNKL" mobile_element complement(24300885..24300984) /note="source:CACAO_PIF_E119_scaffold_3 4509 4608" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 24301381..24303466 /locus_tag="TCM_014752" /note="dbxref CacaoGD:Thecc1EG014752" mRNA join(24301381..24301725,24301884..24301955, 24302615..24302695,24302935..24303466) /locus_tag="TCM_014752" /product="Histone superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400032037" /inference="similar to AA sequence:Phytozome:POPTR_0015s11720.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8889t1" CDS join(24301602..24301725,24301884..24301955, 24302615..24302695,24302935..24303083) /locus_tag="TCM_014752" /codon_start=1 /product="Histone superfamily protein" /protein_id="EOY22641.1" /db_xref="Phytozome:POPTR_0015s11720.1" /db_xref="TAIR:AT5G50930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7MQV0" /translation="MEIGEDRSDLEKEGEEEEEDSVFDLLRDRFRLSAISIAEAEAKR NGMEILEPIVACIADLAFKYTGQLAKDLELFAQHAGRKSVKMEDVIVSAHRNEHLAAV LMSFRNKLKAKEPQSERKRKKGSRKEDKATDSVVHVPDA" mobile_element complement(24306400..24307422) /note="source:CACAO_PIF_E144_scaffold_10 1208 2396" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 24312964..24313028 /note="source:CACAO_Again_on_E64_scaffold_2 661 723" /mobile_element_type="transposon:TIR/hAT" mobile_element 24312974..24313013 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5671 5732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24313014..24313065) /note="source:CACAO_PIF_E144_scaffold_10 6004 6055" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 24313576..24314078 /note="source:scaffold_4_CACTA_0482 4490 5047" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24314077..24314727 /note="source:scaffold_4_CACTA_0482 5218 5903" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24315805..24316607) /note="source:CACAO_hAT_E410_scaffold_1 621 1424" /mobile_element_type="transposon:TIR/hAT" gene 24318257..24327732 /locus_tag="TCM_014753" /note="dbxref CacaoGD:Thecc1EG014753" mRNA join(24318257..24318746,24319749..24319918, 24320139..24320184,24321391..24321678,24322166..24322587, 24322720..24322878,24323040..24323156,24323241..24323389, 24323705..24323787,24323901..24324302,24324564..24325215, 24325711..24325795,24325916..24325984,24326124..24326303, 24326465..24327205,24327370..24327732) /locus_tag="TCM_014753" /product="MEI2-like 4, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014409" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008343t1" /inference="similar to AA sequence:ricco:30147.m014409" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5755t2" mRNA join(24318504..24318949,24319749..24319918, 24320139..24320184,24321391..24321678,24322166..24322587, 24322720..24322878,24323040..24323156,24323241..24323389, 24323705..24323787,24323901..24324302,24324564..24325215, 24325711..24325795,24325916..24325984,24326124..24326303, 24326465..24327675) /locus_tag="TCM_014753" /product="MEI2-like 4, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014409" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008343t1" /inference="similar to AA sequence:ricco:30147.m014409" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5755t2; alternateUTRof:Thecc1EG014753t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5755t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc503t10" CDS join(24319841..24319918,24320139..24320184, 24321391..24321678,24322166..24322587,24322720..24322878, 24323040..24323156,24323241..24323389,24323705..24323787, 24323901..24324302,24324564..24325215,24325711..24325795, 24325916..24325984,24326124..24326303,24326465..24326626) /locus_tag="TCM_014753" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014409; paralog of Thecc1EG008343t1" /codon_start=1 /product="MEI2-like 4, putative isoform 1" /protein_id="EOY22642.1" /db_xref="TAIR:AT5G61960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFK9" /translation="MPFEIMDQRNASASSHFFEDLRFPAERQIGFWKPNTMSDNQDKL VGSSPSEKLSADRMELPPSNLVRDQEEKLGIGWKGVINLSEPSWNSVNHHPKSLSNLY TQPAVNFNGNSANLNVIQHESSLFSSSLSEIFSRKLRLLGNDLSCQHASEAASNHEEE PFKSMEEIEAQTIGNLLPDEDDLFSGVIDDLGLNANASKGDELEDFDLFSSGGGLELE GDDRLSMPRNSDLGGVFNGQGGSNGSIVGEHPYGEHPSRTLFVRNINSNVEDSELQAL FEQYGDIRTLYTACKHRGFVMISYYDIRAARNAMRALQNKPLRRRKLDIHYSIPKDNP SEKDVNQGTLVVFNLDSSVSTDELQQIFGAFGEIKEVRETPHKHSHKFIEFYDVRAAE AALHALNRSDIAGKQIKLEPSRPGGVRRFMQQSEQEQDEPSLCESPFDELSSGHIGVI VSGCMDNGSSQVLHSVIQSPVSSFVEPNRSSSVPINLASPARVAPIGKQLSLREPNHS LDDMKFANQGVPSFHPHSFPEYHDSLANGTPFNSSSTITDMASSVGPMMTGGLDNRHI RAASSNGHLMEPNAGFFGSSGNGSLSLNGNHYMWNNSNSHQQHPSSAMVWPNSPSFVN GIHANRLPHMPAFPRAPPVMLNVGSPVHHIGSAPPVNSAFWDRRHPYAGESPETSGFH LGSLGSVGFPGSSPSHPVEIASHNIFSHVGGNCMDLTKNGGVHSPQQMCHLFPGRNPM ISMPASLDSPNERVRNFSHRRNESNSSNADKKQYELDIDRIIRGEDSRTTLMIKNIPN KYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPQQIIPFHKAFNGKK WEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDQEPFP MGTNIRSRPGRLRTGNEENHRLGCSSTSANGEEFSNGADFLLGSSKDSD" CDS join(24319841..24319918,24320139..24320184, 24321391..24321678,24322166..24322587,24322720..24322878, 24323040..24323156,24323241..24323389,24323705..24323787, 24323901..24324302,24324564..24325215,24325711..24325795, 24325916..24325984,24326124..24326303,24326465..24326626) /locus_tag="TCM_014753" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014409; paralog of Thecc1EG008343t1" /codon_start=1 /product="MEI2-like 4, putative isoform 1" /protein_id="EOY22643.1" /db_xref="TAIR:AT5G61960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFK9" /translation="MPFEIMDQRNASASSHFFEDLRFPAERQIGFWKPNTMSDNQDKL VGSSPSEKLSADRMELPPSNLVRDQEEKLGIGWKGVINLSEPSWNSVNHHPKSLSNLY TQPAVNFNGNSANLNVIQHESSLFSSSLSEIFSRKLRLLGNDLSCQHASEAASNHEEE PFKSMEEIEAQTIGNLLPDEDDLFSGVIDDLGLNANASKGDELEDFDLFSSGGGLELE GDDRLSMPRNSDLGGVFNGQGGSNGSIVGEHPYGEHPSRTLFVRNINSNVEDSELQAL FEQYGDIRTLYTACKHRGFVMISYYDIRAARNAMRALQNKPLRRRKLDIHYSIPKDNP SEKDVNQGTLVVFNLDSSVSTDELQQIFGAFGEIKEVRETPHKHSHKFIEFYDVRAAE AALHALNRSDIAGKQIKLEPSRPGGVRRFMQQSEQEQDEPSLCESPFDELSSGHIGVI VSGCMDNGSSQVLHSVIQSPVSSFVEPNRSSSVPINLASPARVAPIGKQLSLREPNHS LDDMKFANQGVPSFHPHSFPEYHDSLANGTPFNSSSTITDMASSVGPMMTGGLDNRHI RAASSNGHLMEPNAGFFGSSGNGSLSLNGNHYMWNNSNSHQQHPSSAMVWPNSPSFVN GIHANRLPHMPAFPRAPPVMLNVGSPVHHIGSAPPVNSAFWDRRHPYAGESPETSGFH LGSLGSVGFPGSSPSHPVEIASHNIFSHVGGNCMDLTKNGGVHSPQQMCHLFPGRNPM ISMPASLDSPNERVRNFSHRRNESNSSNADKKQYELDIDRIIRGEDSRTTLMIKNIPN KYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPQQIIPFHKAFNGKK WEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDQEPFP MGTNIRSRPGRLRTGNEENHRLGCSSTSANGEEFSNGADFLLGSSKDSD" gene 24327749..24329796 /locus_tag="TCM_014754" /note="dbxref CacaoGD:Thecc1EG014754" mRNA join(24327749..24328207,24328380..24329796) /locus_tag="TCM_014754" /product="APO protein 3, mitochondrial" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007874001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007306t2" /inference="similar to AA sequence:ricco:30147.m014408" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06268t00001" CDS join(24327816..24328207,24328380..24329226) /locus_tag="TCM_014754" /note="dbxref ricco:30147.m014408; paralog of Thecc1EG007306t2" /codon_start=1 /product="APO protein 3, mitochondrial" /protein_id="EOY22644.1" /db_xref="TAIR:AT5G61930.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FH50" /translation="MQRKSLLSQISQLNKLHFRFNRYSFSSEKTQNLPLFPDKNDDPL YSDVPKPRTDKSERKPYPTPMKELIKRAKQEKELRKAQPCRLLEHPPANGLLVPELVD VAHRVHQAREFLLSGLSKLVRVIPVQRCKFCSEVHIGSVGHEIRTCTGPESGSRSAAH VWRKGGVVDVVTFPKCFHLYDRVGKPRVVHDERHSVKRIPAVLELCIQAGIDIEKYPS KRRTKPVYSIEGRIVDFESVAGMDEIESNFFWENLDGSGTGELTRDSNSELNDEEKNL TELSIRAMDSWFEMITGLKKIMEKYSVWTCGYCPEVQVGPKGHKVRMCKASKHQSRNG LHAWQEATIDDLVRPNYVWHVRNLNGPPPHNDLKRYYGKAPAAVELCVQAGAPVPDQY RSMMRLDVVPPERDEVDLVA" mobile_element 24330329..24331094 /note="source:scaffold_8_CACTA_0855 1983 2598" /mobile_element_type="transposon:TIR/CACTA" gene 24331071..24337219 /locus_tag="TCM_014755" /note="dbxref CacaoGD:Thecc1EG014755" mRNA join(24331071..24331515,24332077..24332467, 24332550..24332703,24332881..24332925,24333881..24334046, 24334244..24334611,24335377..24335833,24336880..24337219) /locus_tag="TCM_014755" /product="Nucleotide binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008647001" /inference="similar to AA sequence:Phytozome:GSVIVT01008647001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05566t00001" mRNA join(24331186..24331515,24332077..24332467, 24332550..24332703,24332878..24332925,24333881..24334046, 24334244..24334611,24335377..24336043) /locus_tag="TCM_014755" /product="Nucleotide binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008647001" /inference="similar to AA sequence:Phytozome:GSVIVT01008647001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5737t1; inference alignment:Newbler:10:TSA:cgbaB_g05566t00001" CDS join(24331333..24331515,24332077..24332467, 24332550..24332703,24332878..24332925,24333881..24334046, 24334244..24334611,24335377..24335692) /locus_tag="TCM_014755" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nucleotide binding protein, putative isoform 2" /protein_id="EOY22646.1" /db_xref="Phytozome:GSVIVT01008647001" /db_xref="TAIR:AT5G50970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RA64" /translation="MSASLTIAKKVKEEEAEEDEAATGEDEDSRAEQEEALVALIEHR TKEVDHLRQRISYYNSQLHQAEKRLQDSQSKLTRLRERHNRASSGGSLANGTKNVKVE PRSTSPEHINGGFRNQPQSRTELVIPSVNPRNAQPVKSAGSGANSAAVSGLEASAASN RAVKAKAEKSHRSSTDVQAVETKDKGTKRKFEQKEHKELIPLVRSSSSPNTIRYTSTQ ISSQHKRKLRSLAVCPVNDQLFVTSSALDGLVSLWQLQARGSSASLLSTTDCASSRER RWPEDIAWHPHGNSLFSVYTADAGDSQISVLNLNKTQGRARVTFLENKPHVKGIINSI IFMPWENTCFVTGGSDHAVVLWDERDENVWKPKSLHRNLHSSAVMGVAGMQQKQIVLS AGLDKRIVGFDVHVGRADFKHQLESKCMSVLPNPCDFNLFMVQAGAHERQLRLYDIRL RQTELHSFGWKQESSDSLSALINQAWSPDGLYLSSGSADPVIHIFDIRYNAHKPSQSI RAHQKRVFKAVWHYSIPLLISISSDLHIGLHKL" CDS join(24331333..24331515,24332077..24332467, 24332550..24332703,24332881..24332925,24333881..24334046, 24334244..24334611,24335377..24335692) /locus_tag="TCM_014755" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nucleotide binding protein, putative isoform 1" /protein_id="EOY22645.1" /db_xref="Phytozome:GSVIVT01008647001" /db_xref="TAIR:AT5G50970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RA64" /translation="MSASLTIAKKVKEEEAEEDEAATGEDEDSRAEQEEALVALIEHR TKEVDHLRQRISYYNSQLHQAEKRLQDSQSKLTRLRERHNRASSGGSLANGTKNVKVE PRSTSPEHINGGFRNQPQSRTELVIPSVNPRNAQPVKSAGSGANSAAVSGLEASAASN RAVKAKAEKSHRSSTDVQAVETKDKGTKRKFEQKEHKELIPLVRSSSSPNTIRYTSTQ ISSQHKRKLRSLAVCPVNDQLFVTSALDGLVSLWQLQARGSSASLLSTTDCASSRERR WPEDIAWHPHGNSLFSVYTADAGDSQISVLNLNKTQGRARVTFLENKPHVKGIINSII FMPWENTCFVTGGSDHAVVLWDERDENVWKPKSLHRNLHSSAVMGVAGMQQKQIVLSA GLDKRIVGFDVHVGRADFKHQLESKCMSVLPNPCDFNLFMVQAGAHERQLRLYDIRLR QTELHSFGWKQESSDSLSALINQAWSPDGLYLSSGSADPVIHIFDIRYNAHKPSQSIR AHQKRVFKAVWHYSIPLLISISSDLHIGLHKL" gene 24339231..24340262 /locus_tag="TCM_014756" /note="dbxref CacaoGD:Thecc1EG014756" mRNA 24339231..24340262 /locus_tag="TCM_014756" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039297t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS 24339443..24339868 /locus_tag="TCM_014756" /note="paralog of Thecc1EG039297t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22647.1" /translation="MLAYDGRSYPFIPLVQNFNMPSAIRLRNYLLAQHRAPPRNYALR RRTASQSRVQAPRNDVLDVVPLSARVRIGPSSALGPQRWLHIPLQVQLGENEIPTLLV QQRRYHSQQRRNLNERERKINEGKIETLLMASRWLLLLW" gene 24340837..24346377 /locus_tag="TCM_014757" /note="dbxref CacaoGD:Thecc1EG014757" mRNA join(24340837..24340951,24341676..24342120, 24343496..24343612,24343828..24344192,24344592..24344885, 24346267..24346377) /locus_tag="TCM_014757" /product="DCD (Development and Cell Death) domain-like protein isoform 5" /inference="alignment:exonerate- protein:2:TAIR:AT5G61910.4.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008340t1" /inference="similar to AA sequence:Phytozome:GSVIVT01001088001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:PASA:2:TSA:puevd3b014255t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00017t00003" mRNA join(24340837..24340951,24341676..24341754, 24341857..24342120,24343496..24343612,24343828..24344192, 24344592..24344885,24346267..24346377) /locus_tag="TCM_014757" /product="DCD (Development and Cell Death) domain-like protein isoform 3" /inference="similar to AA sequence:frave:gene06410" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00017t00004; inference alignment:Newbler:10:TSA:cgbaB_g00017t00003; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc165t8" mRNA join(24340837..24340951,24341676..24341754, 24341857..24342120,24343496..24343612,24343702..24344192, 24344592..24344885,24345622..24345744) /locus_tag="TCM_014757" /product="DCD (Development and Cell Death) domain-like protein isoform 1" /inference="similar to AA sequence:Phytozome:GSVIVT01001088001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00017t00001; alternateUTRof:Thecc1EG014757t1; inference alignment:Newbler:10:TSA:cgbaB_g00017t00003; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc165t8" mRNA join(24340837..24340951,24341676..24341754, 24341857..24342120,24343496..24343612,24343828..24344192, 24344592..24344885,24345622..24345744) /locus_tag="TCM_014757" /product="DCD (Development and Cell Death) domain-like protein isoform 3" /inference="similar to AA sequence:frave:gene06410" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00017t00002; alternateUTRof:Thecc1EG014757t3; inference alignment:Newbler:10:TSA:cgbaB_g00017t00003; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc165t8" mRNA join(24340837..24340951,24341676..24342120, 24343496..24343612,24343702..24344341) /locus_tag="TCM_014757" /product="JHL07K02.18-like protein isoform 6" /inference="alignment:exonerate- protein:2:TAIR:AT5G61910.4.2" /inference="similar to AA sequence:Phytozome:GSVIVT01001088001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:PASA:2:TSA:puevd3b014255t1a5; inference alignment:Newbler:10:TSA:cgbaB_g00017t00003" mRNA join(24340838..24340951,24341676..24341754, 24341857..24342120,24343496..24343612,24343702..24344192, 24344592..24344885,24346267..24346332) /locus_tag="TCM_014757" /product="DCD (Development and Cell Death) domain-like protein isoform 1" /inference="similar to AA sequence:Phytozome:GSVIVT01001088001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00017t00003" CDS join(24341728..24341754,24341857..24342120, 24343496..24343612,24343702..24344192,24344592..24344595) /locus_tag="TCM_014757" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DCD (Development and Cell Death) domain-like protein isoform 1" /protein_id="EOY22648.1" /db_xref="Phytozome:GSVIVT01001088001" /db_xref="TAIR:AT5G61910.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU76" /translation="MPLLDANKMEREIEEHDQEELSGFIFMCNGRTKPQCYQYRVFGL PVGKMEVVEKIKPGMKLFLFDFELKLLYGIYEATSVGTMNLEQTAFNGRFPAQVGFKI YKDCLPLHESSFRHAIEHNYQKGFKFNQELNKQQVRSLLSLFRPFTVSALGSLQPMQQ QAVENQSRLPFLKDSCAQVLESQHVQQIGFQRYNCYRPLLDMSHVHPVMKPQVSLAPV DPNVTGMQLGYVQPVSEPQNILQSAPFQQQHYFGSSTNRGHSNPTTVTQAFLTSNGQL YLAEVQQPYVAGNPTQPVPDQYNR" CDS join(24341728..24341754,24341857..24342120, 24343496..24343612,24343702..24344192,24344592..24344595) /locus_tag="TCM_014757" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DCD (Development and Cell Death) domain-like protein isoform 1" /protein_id="EOY22649.1" /db_xref="Phytozome:GSVIVT01001088001" /db_xref="TAIR:AT5G61910.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU76" /translation="MPLLDANKMEREIEEHDQEELSGFIFMCNGRTKPQCYQYRVFGL PVGKMEVVEKIKPGMKLFLFDFELKLLYGIYEATSVGTMNLEQTAFNGRFPAQVGFKI YKDCLPLHESSFRHAIEHNYQKGFKFNQELNKQQVRSLLSLFRPFTVSALGSLQPMQQ QAVENQSRLPFLKDSCAQVLESQHVQQIGFQRYNCYRPLLDMSHVHPVMKPQVSLAPV DPNVTGMQLGYVQPVSEPQNILQSAPFQQQHYFGSSTNRGHSNPTTVTQAFLTSNGQL YLAEVQQPYVAGNPTQPVPDQYNR" CDS join(24341728..24341754,24341857..24342120, 24343496..24343612,24343828..24344192,24344592..24344595) /locus_tag="TCM_014757" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene06410" /codon_start=1 /product="DCD (Development and Cell Death) domain-like protein isoform 3" /protein_id="EOY22650.1" /db_xref="TAIR:AT5G61910.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F2E5E5" /translation="MPLLDANKMEREIEEHDQEELSGFIFMCNGRTKPQCYQYRVFGL PVGKMEVVEKIKPGMKLFLFDFELKLLYGIYEATSVGTMNLEQTAFNGRFPAQVGFKI YKDCLPLHESSFRHAIEHNYQKGFKFNQELNKQQVLESQHVQQIGFQRYNCYRPLLDM SHVHPVMKPQVSLAPVDPNVTGMQLGYVQPVSEPQNILQSAPFQQQHYFGSSTNRGHS NPTTVTQAFLTSNGQLYLAEVQQPYVAGNPTQPVPDQYNR" CDS join(24341728..24341754,24341857..24342120, 24343496..24343612,24343828..24344192,24344592..24344595) /locus_tag="TCM_014757" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene06410" /codon_start=1 /product="DCD (Development and Cell Death) domain-like protein isoform 3" /protein_id="EOY22651.1" /db_xref="TAIR:AT5G61910.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F2E5E5" /translation="MPLLDANKMEREIEEHDQEELSGFIFMCNGRTKPQCYQYRVFGL PVGKMEVVEKIKPGMKLFLFDFELKLLYGIYEATSVGTMNLEQTAFNGRFPAQVGFKI YKDCLPLHESSFRHAIEHNYQKGFKFNQELNKQQVLESQHVQQIGFQRYNCYRPLLDM SHVHPVMKPQVSLAPVDPNVTGMQLGYVQPVSEPQNILQSAPFQQQHYFGSSTNRGHS NPTTVTQAFLTSNGQLYLAEVQQPYVAGNPTQPVPDQYNR" CDS join(24341908..24342120,24343496..24343612, 24343828..24344192,24344592..24344595) /locus_tag="TCM_014757" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG008340t1" /codon_start=1 /product="DCD (Development and Cell Death) domain-like protein isoform 5" /protein_id="EOY22652.1" /db_xref="Phytozome:GSVIVT01001088001" /db_xref="TAIR:AT5G61910.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F2E5E5" /translation="MCNGRTKPQCYQYRVFGLPVGKMEVVEKIKPGMKLFLFDFELKL LYGIYEATSVGTMNLEQTAFNGRFPAQVGFKIYKDCLPLHESSFRHAIEHNYQKGFKF NQELNKQQVLESQHVQQIGFQRYNCYRPLLDMSHVHPVMKPQVSLAPVDPNVTGMQLG YVQPVSEPQNILQSAPFQQQHYFGSSTNRGHSNPTTVTQAFLTSNGQLYLAEVQQPYV AGNPTQPVPDQYNR" CDS join(24341908..24342120,24343496..24343612, 24343702..24344235) /locus_tag="TCM_014757" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="JHL07K02.18-like protein isoform 6" /protein_id="EOY22653.1" /db_xref="Phytozome:GSVIVT01001088001" /db_xref="TAIR:AT5G61910.3" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NU18" /translation="MCNGRTKPQCYQYRVFGLPVGKMEVVEKIKPGMKLFLFDFELKL LYGIYEATSVGTMNLEQTAFNGRFPAQVGFKIYKDCLPLHESSFRHAIEHNYQKGFKF NQELNKQQVRSLLSLFRPFTVSALGSLQPMQQQAVENQSRLPFLKDSCAQVLESQHVQ QIGFQRYNCYRPLLDMSHVHPVMKPQVSLAPVDPNVTGMQLGYVQPVSEPQNILQSAP FQQQHYFGSSTNRGHSNPTTVTQAFLTSNGQLYLAEVQQPYVAGNPTQPVPDQYNRCL FLFMDELGSRS" gene 24348045..24355536 /locus_tag="TCM_014761" /note="dbxref CacaoGD:Thecc1EG014761" mRNA join(24348045..24348497,24348857..24348904, 24349803..24349951,24350059..24350107,24350436..24350492, 24350730..24350918,24351013..24351147,24351484..24351545, 24351631..24351733,24351819..24351933,24353178..24353254, 24353336..24353473,24353572..24353736,24354038..24354151, 24354289..24354409,24354487..24355379) /locus_tag="TCM_014761" /product="DCD (Development and Cell Death) domain protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G61910.4.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025928t1" /inference="similar to AA sequence:frave:gene06409" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5879t1" mRNA join(24348194..24348497,24348857..24348904, 24349803..24349951,24350059..24350107,24350436..24350492, 24350730..24350918,24351013..24351147,24351484..24351545, 24351631..24351733,24351819..24351933,24353178..24353254, 24353336..24353473,24353572..24353736,24354038..24354151, 24354289..24354385,24354487..24355536) /locus_tag="TCM_014761" /product="DCD (Development and Cell Death) domain protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G61910.4.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025928t1" /inference="similar to AA sequence:frave:gene06409" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5879t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5879t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc138t7" CDS join(24348354..24348497,24348857..24348904, 24349803..24349951,24350059..24350107,24350436..24350492, 24350730..24350918,24351013..24351147,24351484..24351545, 24351631..24351733,24351819..24351933,24353178..24353254, 24353336..24353473,24353572..24353736,24354038..24354151, 24354289..24354409,24354487..24354581) /locus_tag="TCM_014761" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene06409; paralog of Thecc1EG025928t1" /codon_start=1 /product="DCD (Development and Cell Death) domain protein isoform 1" /protein_id="EOY22654.1" /db_xref="TAIR:AT5G61910.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I408" /translation="MGNCCSDVGGGMAAVGGTAASAVTGNQNDAVDMFFKSRGIHGLF SQIELSFSASNLRNRDIFSKSDPMVVVYIKERDGAITEVFRTEVVLNSLNPTWITKYT ITYHFEVVQTFLFHVFDVDTQFHNVDVKMLKLEEQQSLGEACCALSEIVTKPNRSLTF DLVRREESVTATHSQHRGKLTVHAEECFSSKTTSEMVLRCSDLESKDLFSKSDPFLVI SKLVESGISIPVCKTEVLKNDLNPTWKPIFLNIQQVGSKDSPLVIECFNFNSNGKHDL IGKVQKSLADLEKLHSGREGESLFLPTPVGHDFQNKVLKSKLFVDQFSETVQHTFLDY LAAGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRLNAYQKAIYEVGEVLQFYDADK RFPAWGFGARPIDGPVSHCFNLNGSSNYCEVEGIRGIMMAYTSALFNVSLAGPTLFGH VINKAALIASQSLANDARKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGG ADFKEMEILDADKGERLESSTGRVASRDIVQFVPFRDVQSKSSSQSKGGEISIVQALL AELPTQFLTYMRSRDIKPST" CDS join(24348354..24348497,24348857..24348904, 24349803..24349951,24350059..24350107,24350436..24350492, 24350730..24350918,24351013..24351147,24351484..24351545, 24351631..24351733,24351819..24351933,24353178..24353254, 24353336..24353473,24353572..24353736,24354038..24354151, 24354289..24354385,24354487..24354581) /locus_tag="TCM_014761" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene06409; paralog of Thecc1EG025928t1" /codon_start=1 /product="DCD (Development and Cell Death) domain protein isoform 2" /protein_id="EOY22655.1" /db_xref="TAIR:AT5G61910.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I408" /translation="MGNCCSDVGGGMAAVGGTAASAVTGNQNDAVDMFFKSRGIHGLF SQIELSFSASNLRNRDIFSKSDPMVVVYIKERDGAITEVFRTEVVLNSLNPTWITKYT ITYHFEVVQTFLFHVFDVDTQFHNVDVKMLKLEEQQSLGEACCALSEIVTKPNRSLTF DLVRREESVTATHSQHRGKLTVHAEECFSSKTTSEMVLRCSDLESKDLFSKSDPFLVI SKLVESGISIPVCKTEVLKNDLNPTWKPIFLNIQQVGSKDSPLVIECFNFNSNGKHDL IGKVQKSLADLEKLHSGREGESLFLPTPVGHDFQNKVLKSKLFVDQFSETVQHTFLDY LAAGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRLNAYQKAIYEVGEVLQFYDADK RFPAWGFGARPIDGPVSHCFNLNGSSNYCEVEGIRGIMMAYTSALFNVSLAGPTLFGH VINKAALIASQSLANDARKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGG ADFKEMEILDADKGERLESSTGRVASRDIVQFVPFRDVQSGEISIVQALLAELPTQFL TYMRSRDIKPST" mobile_element complement(24355478..24356175) /note="source:INTACT135F_F90_scaffold_2-int 13333 13989" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24356176..24356262) /note="source:scaffold_2_CACTA_0244 14257 14671" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24358089..24358187 /note="source:scaffold_4_CACTA_0511 2497 2587" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24358795..24358889) /note="source:scaffold_2_CACTA_0252 8779 8883" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24358890..24358903) /note="source:CACAO_on_E390_scaffold_1 744 856" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 24359802..24359912 /note="source:scaffold_9_CACTA_0936 325 420" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24360530..24360637 /note="source:scaffold_1_CACTA_0016 6331 6435" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24361319..24361536) /note="source:INTACT383F_F354_scaffold_3-int 2393 2604" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 24362620..24365256 /locus_tag="TCM_014762" /note="dbxref CacaoGD:Thecc1EG014762" mRNA join(24362620..24362769,24363029..24363319, 24364013..24365256) /locus_tag="TCM_014762" /product="Integrase-type DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014403" /inference="similar to AA sequence:TAIR:AT5G61890.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5745t1" CDS join(24362745..24362769,24363029..24363319, 24364013..24364587) /locus_tag="TCM_014762" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein, putative" /protein_id="EOY22656.1" /db_xref="TAIR:AT5G61890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LY29" /translation="MLDRGFQHSKAYIKGENPKTYKVDPRQGKRPLSPDESEEKEEDH IFPVYSARSQQDMNAMVQALAQVIGNNNSNNNNNSNPFQPHDQHPTYQSDTAGQQNQS QDQGNVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFK GSKAKLNFPERVQGRSELGYLTTRRDVERAVALPPPFPPPSQTTYPNLSQYAHLLSGG SGNALNYALPGAHGASPFTSHATLSSSSSSSSTTLTSQQQQQQQDYFGGFLLQFGGSS APGSDPPTNRRDYDYYYSRE" mobile_element complement(24365327..24365372) /note="source:CACAO_M_E47_F305_scaffold_1 1284 1329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24366827..24367055 /note="source:scaffold_4_CACTA_0484 373 631" /mobile_element_type="transposon:TIR/CACTA" gene complement(24370566..24372528) /locus_tag="TCM_014764" /note="dbxref CacaoGD:Thecc1EG014764" mRNA complement(join(24370566..24370871,24370963..24371093, 24371251..24371338,24372281..24372371,24372471..24372528)) /locus_tag="TCM_014764" /product="Transporter, Pam16" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s11790.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020083t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11790.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8912t1" CDS complement(join(24370743..24370871,24370963..24371093, 24371251..24371338,24372281..24372283)) /locus_tag="TCM_014764" /note="paralog of Thecc1EG020083t1" /codon_start=1 /product="Transporter, Pam16" /protein_id="EOY22657.1" /db_xref="Phytozome:POPTR_0015s11790.1" /db_xref="TAIR:AT3G59280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I3R0" /translation="MAARILANLIVMGSGILGRAVFQAYRQALANASKSGIAQETVQN IRRASKSMAEPEARQILGVTEHSSWEEILQKYDNLFEQNAKNGSFYLQSKVHRAKECL EAVYQKKAQGTMDA" mobile_element complement(24372765..24372881) /note="source:CACAO_M_E23991_F4_scaffold_4 2525 2643" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24373405..24373485 /note="source:scaffold_10_CACTA_0138 2342 2422" /mobile_element_type="transposon:TIR/CACTA" gene complement(24373484..24379031) /locus_tag="TCM_014765" /note="dbxref CacaoGD:Thecc1EG014765" mRNA complement(join(24373484..24374314,24374584..24374798, 24375080..24375221,24375468..24375570,24375660..24375721, 24375815..24375914,24376923..24377048,24377357..24377892, 24378416..24379031)) /locus_tag="TCM_014765" /product="Zinc finger (C3HC4-type RING finger) family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s12980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012584t1" /inference="similar to AA sequence:frave:gene06398" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b014262t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5757t2" mRNA complement(join(24373484..24374314,24374584..24374798, 24375080..24375224,24375468..24375570,24375660..24375721, 24375815..24375914,24376923..24377048,24377357..24377892, 24378416..24379031)) /locus_tag="TCM_014765" /product="Zinc finger (C3HC4-type RING finger) family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s12980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012584t1" /inference="similar to AA sequence:frave:gene06398" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5757t2" CDS complement(join(24374150..24374314,24374584..24374798, 24375080..24375221,24375468..24375570,24375660..24375721, 24375815..24375914,24376923..24377048,24377357..24377892, 24378416..24378949)) /locus_tag="TCM_014765" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene06398; paralog of Thecc1EG012584t1" /codon_start=1 /product="Zinc finger (C3HC4-type RING finger) family protein, putative isoform 2" /protein_id="EOY22659.1" /db_xref="TAIR:AT1G57820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYZ0" /translation="MGNADQKPTPGKKRSCDPTGRCMLCKTWPDEEDIIDCIICKTPW HLTCLIAVRESLALEDIGMGCPDCDDNNNPTKEELAVVVDEATVTGGASSSSGDTIVA QIMAIQADGSLTEEEKARKRQELLSGRVAGPEKENGGKNKGKGKEKMVEGKCDALEVS DESFNCSICLKMLDRPVSTPCGHNFCLKCFQSSTRRQRNSTCPLCRNPIPAAMASQPR INLMLVFAIRKAKMLSSNASDMASRVYEYVRNQDRPDKAYTTERAKKSGKANAASGRI FVTVPTDHFGPILAENDPERNRGVLVGDTWADRLECRQWGAHFPPIKGIAGQQDHGAQ SVILSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQEFKSGNESLRLSCKNG YPIRVIRSFKDKHSSYAPEKGLRYDGIYRVEKCWLNVGVQGFKVCRYLFVRCDNDPAP WTSDVHGDCPRPLPVIEELKKASNVTERKESPSWDYDADGCWKWIKPPPISKQKENTG NSVGRKRSRIIVKQAQSAAAKKRLQKQYGCPICKEVLEMPVTTPCGHNFCKSCLEGVF AGHSLVRERNAGGRPLRSKRNVLKCPSCPSDLSEYLNNLKVNIELKNLIAKQIGENEN SAEEPRENGTACAQEDLSGSSDIHEENSEEADVDGG" CDS complement(join(24374150..24374314,24374584..24374798, 24375080..24375224,24375468..24375570,24375660..24375721, 24375815..24375914,24376923..24377048,24377357..24377892, 24378416..24378949)) /locus_tag="TCM_014765" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene06398; paralog of Thecc1EG012584t1" /codon_start=1 /product="Zinc finger (C3HC4-type RING finger) family protein, putative isoform 1" /protein_id="EOY22658.1" /db_xref="TAIR:AT1G57820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYZ0" /translation="MGNADQKPTPGKKRSCDPTGRCMLCKTWPDEEDIIDCIICKTPW HLTCLIAVRESLALEDIGMGCPDCDDNNNPTKEELAVVVDEATVTGGASSSSGDTIVA QIMAIQADGSLTEEEKARKRQELLSGRVAGPEKENGGKNKGKGKEKMVEGKCDALEVS DESFNCSICLKMLDRPVSTPCGHNFCLKCFQSSTRRQRNSTCPLCRNPIPAAMASQPR INLMLVFAIRKAKMLSSNASDMASRVYEYVRNQDRPDKAYTTERAKKSGKANAASGRI FVTVPTDHFGPILAENDPERNRGVLVGDTWADRLECRQWGAHFPPIKGIAGQQDHGAQ SVILSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQEFKSGNESLRLSCKNG YPIRVIRSFKDKHSSYAPEKGLRYDGIYRVEKCWLNVGVQGFKVCRYLFVRCDNDPAP WTSDVHGDCPRPLPVIEELKKASNVTERKESPSWDYDEADGCWKWIKPPPISKQKENT GNSVGRKRSRIIVKQAQSAAAKKRLQKQYGCPICKEVLEMPVTTPCGHNFCKSCLEGV FAGHSLVRERNAGGRPLRSKRNVLKCPSCPSDLSEYLNNLKVNIELKNLIAKQIGENE NSAEEPRENGTACAQEDLSGSSDIHEENSEEADVDGG" mobile_element 24382361..24382767 /note="source:CACAO_on_E231_scaffold_8 4 410" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 24382632..24382796 /note="source:scaffold_1_CACTA_0005 6793 6960" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24383005..24383133) /note="source:INTACT721_F2_scaffold_7-int 675 803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24383135..24383709) /note="source:CACAO_M_E4300_F2_scaffold_2 1 576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24384119..24384231) /note="source:scaffold_4_CACTA_0495 6757 6879" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24384654..24384665 /note="source:scaffold_6_CACTA_0706 1385 1481" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24384666..24384747) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3900 3981" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24386930..24390851) /locus_tag="TCM_014766" /note="dbxref CacaoGD:Thecc1EG014766" mRNA complement(join(24386930..24387417,24388566..24389174, 24389998..24390087,24390186..24390305,24390437..24390610, 24390743..24390851)) /locus_tag="TCM_014766" /product="JHL07K02.14 protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014402" /inference="similar to AA sequence:Phytozome:POPTR_0012s11070.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5777t1" CDS complement(join(24387097..24387417,24388566..24389174, 24389998..24390087,24390186..24390305,24390437..24390583)) /locus_tag="TCM_014766" /codon_start=1 /product="JHL07K02.14 protein, putative" /protein_id="EOY22660.1" /db_xref="Phytozome:POPTR_0012s11070.1" /db_xref="TAIR:AT5G61865.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NU14" /translation="MEKRRRLQISASKSTAEIGVKLKRLVSQQEQVKIAYHQLKLQIK IGLAEAEEVFSSLAIPLMKLVGLKTEEMAEEGRFTTIIVDADFSPGFCRSRLITESPV VSPTAAGGEWDNQIHREEESWATNATTAGKEFFEKQQTQLVHLLRQIENRVSSHGDDI LESLATWRGFLQKLFQKASNFMSLQSQNHDTILITRKLLQVIYDKTDAVLSSVEDGIQ SLMQDLTKQMCNPMVDYVKGLKADLKFGTCARLLVIVDEMERSMRNGRIELEEARRRI KIAEEGRIKALCKLKESEEKMMRLNEYLEFLAGIEKEHIEHLVSQKFFGREEAEANDY KLVWELQRKKRKFETPGSPMGPKELLYFESNKKRHQSRRERPAFSHSPVIGSHLQALS PQTPCLDTRIPLGLSPSSAIQHVVWRKRISPFPLNS" gene 24390441..24395256 /locus_tag="TCM_014767" /note="dbxref CacaoGD:Thecc1EG014767" mRNA join(24390441..24391181,24391379..24391761, 24391854..24391971,24392489..24392683,24392786..24393010, 24393231..24393290,24393368..24393448,24393623..24394028, 24394239..24395256) /locus_tag="TCM_014767" /product="Glycyl-tRNA synthetase / glycine--tRNA ligase" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025073" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008329t1" /inference="similar to AA sequence:Phytozome:GSVIVT01008654001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5779t2" CDS join(24390996..24391181,24391379..24391761, 24391854..24391971,24392489..24392683,24392786..24393010, 24393231..24393290,24393368..24393448,24393623..24394028, 24394239..24394468) /locus_tag="TCM_014767" /note="paralog of Thecc1EG008329t1" /codon_start=1 /product="Glycyl-tRNA synthetase / glycine--tRNA ligase" /protein_id="EOY22661.1" /db_xref="Phytozome:GSVIVT01008654001" /db_xref="TAIR:AT1G29880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23627" /translation="MASYGDSDVVNRDAFRQAVVNTLERRLFYVPSFKIYGGVAGLYD YGPPGCAVKSNVLAFWRQHFVLEENMLEVDCPCVTPEIVLKASGHVDKFTDLMVKDEK TGTCFRADHLLKDFCKDQLEKDINVTADKAAELKHVLAVLDDLSAEELGEKIREYGIV APDTKNPLSDPYPFNLMFQTSIGPSGLSPGFMRPETAQGIFVNFKDLFYYNGNKLPFA AAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDSDDKSHPKFCEVSNLEFLMFPREK QVSGQPAKRLRLGEAVSKGIVNNETLGYFIGRVYLFLTCLGIDKDRLRFRQHLANEMA HYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTDKSGVALVAHEKFSEPKEVEKLV IAPVKKELGLTFKGDQRMVCEALEVMSEKEAMEMRANLESKGEAEFHVCTLAKDVTIK KNMVTISKEKKKEHQRVFVPSVIEPSFGIGRIIYCLYEHSFYTRPSKTGDEQLNVFRF PPLVAPIKCTVFPLVQNQQYEEVAKHIAQILTAAGISYKIDMTGTSIGKRYARTDELG VPFAITVDATSSVTIRERDSKVQIRVNVEEVASVVKEVTEGHSTWNDMLSKYHNPSAL DDE" gene complement(24394583..24397646) /locus_tag="TCM_014768" /note="dbxref CacaoGD:Thecc1EG014768" mRNA complement(join(24394583..24395277,24396110..24396468, 24397026..24397646)) /locus_tag="TCM_014768" /product="Floricaula/leafy" /inference="alignment:exonerate- protein:2:ricco:30147.m014401" /inference="similar to AA sequence:Phytozome:POPTR_0015s11820.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1389t16_C2" CDS complement(join(24394915..24395277,24396110..24396468, 24397026..24397479)) /locus_tag="TCM_014768" /codon_start=1 /product="Floricaula/leafy" /protein_id="EOY22662.1" /db_xref="Phytozome:POPTR_0015s11820.1" /db_xref="TAIR:AT5G61850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04064" /translation="MDPEAFTTGGFFKWDPRGVVAPTPARLMEAVAPPQPQTAAAVAA AYMGRAPRELGGIEELFQAYGIRYYTAAKIAELGFTVSTLLGMKEEELDEMMNSVSQI FRWELLVGERYGIKAAVRAERRRLEEEDSRRRHLVSGDTTNALDALSQEGLSEEPVQQ EKEAAGSGGGGTWEVVVAGGRKKQRRRKGPKKVVEVDNEDELEGAEDDENGDIGGYER QREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQV FRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKP LVAIAARQGWDIDAIFNAHRRLAIWYVPTKLRQLCHAERNNAAASSSVSGGPDHMAF" mobile_element 24397461..24397520 /note="source:CACAO_M_S_E33129_F347_scaffold_4 433 495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24397487..24397535 /note="source:CACAO_Mariner_E36_scaffold_2 1180 1227" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(24398735..24399089) /note="source:scaffold_2_CACTA_0245 965 1299" /mobile_element_type="transposon:TIR/CACTA" gene 24400891..24404925 /locus_tag="TCM_014769" /note="dbxref CacaoGD:Thecc1EG014769" mRNA join(24400891..24401477,24401785..24403297, 24403418..24403461,24403875..24403952,24404547..24404925) /locus_tag="TCM_014769" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s11110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036393t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc858t3" mRNA join(24401285..24401477,24401785..24404043) /locus_tag="TCM_014769" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s11110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036393t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11110.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc858t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc858t3" CDS join(24401366..24401477,24401785..24403297, 24403418..24403461,24403875..24403912) /locus_tag="TCM_014769" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG036393t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY22663.1" /db_xref="Phytozome:POPTR_0012s11110.1" /db_xref="TAIR:AT5G50990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI49" /translation="MQRNGVKKLIQQTSAAIRCTHSHTSLSFSPDFLHHSRDHRTVCE ILEACKLSSDYKTASAIHAIIFKLGYGTYPSLVTTLISTYLQCGWLVLAHQLIDQVFR SDCNLVILNLVIEHLMKLGEYGSAKKVFHKMPVRDLVTWNIMIGGYVRNARFEEALTF FREMLGSNVKPDKFTFASVITGCARLGALNHALWVHSLITEKEIELNAILNAALIDMY SKCGRIHTAKEVFNSAEHNDVSIWNAMINGLAIHGLAFEAIAVFSKMRVENILPDSIT FIVLLTACSHSGLVEEGQKYFDLMSGHYSIQPQIEHYGAMVDLYGRAGQLEEAYAIIK AMPMEPDIVIWRALLSACQTYRKPELGEVAIANISRLESGDYVLLSNIYCSVKKWESA ERLREMMKKKGIRKIRGRSWIELGGIIHRFKAGDRSHPETEGLYKVLEGLIQRTKLKG FLPETELVLMDISEEEKEGNLNHHSEKLALAYGILKTSPGTEIMISKNLRICHDCHNW IKMVSKLLIRVIIVRDRIRFHRFEGGLCSCADYWIEGSSGKNSYSDIFDTSALLRDDL YC" CDS join(24401366..24401477,24401785..24403301) /locus_tag="TCM_014769" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG036393t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 2" /protein_id="EOY22664.1" /db_xref="Phytozome:POPTR_0012s11110.1" /db_xref="TAIR:AT5G50990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI49" /translation="MQRNGVKKLIQQTSAAIRCTHSHTSLSFSPDFLHHSRDHRTVCE ILEACKLSSDYKTASAIHAIIFKLGYGTYPSLVTTLISTYLQCGWLVLAHQLIDQVFR SDCNLVILNLVIEHLMKLGEYGSAKKVFHKMPVRDLVTWNIMIGGYVRNARFEEALTF FREMLGSNVKPDKFTFASVITGCARLGALNHALWVHSLITEKEIELNAILNAALIDMY SKCGRIHTAKEVFNSAEHNDVSIWNAMINGLAIHGLAFEAIAVFSKMRVENILPDSIT FIVLLTACSHSGLVEEGQKYFDLMSGHYSIQPQIEHYGAMVDLYGRAGQLEEAYAIIK AMPMEPDIVIWRALLSACQTYRKPELGEVAIANISRLESGDYVLLSNIYCSVKKWESA ERLREMMKKKGIRKIRGRSWIELGGIIHRFKAGDRSHPETEGLYKVLEGLIQRTKLKG FLPETELVLMDISEEEKEGNLNHHSEKLALAYGILKTSPGTEIMISKNLRICHDCHNW IKMVSKLLIRVIIVRDRIRFHRFEGGLCSCADYW" gene complement(24405380..24408443) /locus_tag="TCM_014770" /note="dbxref CacaoGD:Thecc1EG014770" mRNA complement(join(24405380..24405953,24406046..24406156, 24406311..24406405,24406779..24407037,24408022..24408412)) /locus_tag="TCM_014770" /product="Sec14p-like phosphatidylinositol transfer family protein, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene33409" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008322t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s09620.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00522t00003; inference alignment:Newbler:10:TSA:cgbaP1_g00423t00001" mRNA complement(join(24405574..24405953,24406046..24406156, 24406311..24406416,24406626..24406662,24406779..24407037, 24408022..24408443)) /locus_tag="TCM_014770" /product="Sec14p-like phosphatidylinositol transfer family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene33409" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008322t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s09620.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00423t00001" CDS complement(join(24405837..24405953,24406046..24406156, 24406311..24406405,24406779..24407037,24408022..24408159)) /locus_tag="TCM_014770" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG008322t1" /codon_start=1 /product="Sec14p-like phosphatidylinositol transfer family protein, putative isoform 3" /protein_id="EOY22667.1" /db_xref="Phytozome:POPTR_0017s09620.1" /db_xref="TAIR:AT1G01630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0X7" /translation="MMMMMSSDSMDCSTETEEESFKSNGIEKTKISLMRTLVETQDPS SKEVDDLTFRRFLRARDLDVEKASAMFLKYLNWRRNFVPNGSISPSEVAQEIEQNKMF LQGSDKKGQLIAVVLAARHFQHKGGVEEFKRQEKFVVIGDLEGWGYANSDIRAYLAAL SLVQEYYPERLEKLFIVHAPYIFMTAWKIVYPFIDNKTRKKIVFVGSKTLKSTLLEEI DESQLPETYGGKLPLVPIHDC" CDS complement(join(24405837..24405953,24406046..24406156, 24406311..24406416,24406626..24406662,24406779..24407037, 24408022..24408159)) /locus_tag="TCM_014770" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG008322t1" /codon_start=1 /product="Sec14p-like phosphatidylinositol transfer family protein isoform 1" /protein_id="EOY22665.1" /db_xref="Phytozome:POPTR_0017s09620.1" /db_xref="TAIR:AT1G01630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0X7" /translation="MMMMMSSDSMDCSTETEEESFKSNGIEKTKISLMRTLVETQDPS SKEVDDLTFRRFLRARDLDVEKASAMFLKYLNWRRNFVPNGSISPSEVAQEIEQNKMF LQGSDKKGQLIAVVLAARHFQHKGGVEEFKRFIVYAFDKIFARMPPGQEKFVVIGDLE GWGYANSDIRAYLAALSLVQEYYPERLEKLFIVHAPYIFMTAWKIVYPFIDNKTRKKI VFVGSKTLKSTLLEEIDESQLPETYGGKLPLVPIHDC" mRNA complement(join(24405969..24406156,24406311..24406416, 24406779..24407037,24408022..24408428)) /locus_tag="TCM_014770" /product="Sec14p-like phosphatidylinositol transfer family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene33409" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008322t1" /inference="similar to AA sequence:Phytozome:Glyma06g17160.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc864t3; inference alignment:Newbler:10:TSA:cgbaP1_g00423t00001" CDS complement(join(24406135..24406156,24406311..24406416, 24406779..24407037,24408022..24408159)) /locus_tag="TCM_014770" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG008322t1" /codon_start=1 /product="Sec14p-like phosphatidylinositol transfer family protein isoform 2" /protein_id="EOY22666.1" /db_xref="Phytozome:Glyma06g17160.3" /db_xref="TAIR:AT1G01630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0X7" /translation="MMMMMSSDSMDCSTETEEESFKSNGIEKTKISLMRTLVETQDPS SKEVDDLTFRRFLRARDLDVEKASAMFLKYLNWRRNFVPNGSISPSEVAQEIEQNKMF LQGSDKKGQLIAVVLAARHFQHKGGVEEFKRCLQDKRNSLLLEILKVGDMQTATSVHT LQLYLSCRSTTLKD" gene complement(24407158..24407656) /locus_tag="TCM_014771" /note="dbxref CacaoGD:Thecc1EG014771" mRNA complement(join(24407158..24407441,24407536..24407656)) /locus_tag="TCM_014771" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03010t00002" CDS complement(join(24407291..24407441,24407536..24407591)) /locus_tag="TCM_014771" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22668.1" /translation="MPVKRRQESPDQSFTTKSRMKWIIITSNIPQILSLGSGSACLPF ICCTCESQPTLLLQYMGKKFCTIP" mobile_element complement(24411689..24412039) /note="source:CACAO_on_SS_E42_scaffold_2 24124 24477" /mobile_element_type="transposon:TIR/Mutator" gene 24413677..24417755 /locus_tag="TCM_014772" /note="dbxref CacaoGD:Thecc1EG014772" mRNA join(24413677..24414056,24415622..24416010, 24416243..24416484,24416618..24416686,24416835..24417755) /locus_tag="TCM_014772" /product="Exostosin family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g37920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008319t1" /inference="similar to AA sequence:ricco:30147.m014397" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8916t1" CDS join(24413948..24414056,24415622..24416010, 24416243..24416484,24416618..24416686,24416835..24417348) /locus_tag="TCM_014772" /note="dbxref ricco:30147.m014397; paralog of Thecc1EG008319t1" /codon_start=1 /product="Exostosin family protein" /protein_id="EOY22669.1" /db_xref="TAIR:AT5G61840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940Q8" /translation="MKIWRWVFVGILILAACAFKIEAFNLGRSQPTERISGSAGDVLE DDPVGRLKVFVYELPSKYNKKILQKDPRCLNHMFAAEIYMHRFLLSSPVRTLNPEEAD WFYTPVYTTCDLTPNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFLVPHDFG ACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLKEGSITIPPYAPPQKMQTHLIP EKTPRSIFVYFRGLFYDVGNDPEGGYYARCYGMEMKILELRASFHVAEKGNTGARAAV WENFKDNPLFDISTEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIAD DIVLPFADAIPWEEIGVFVDEKDVPNLDTILTSIPPEVILRKQRLLANPSMKQAMLFP QPAQPGDAFHQVLNGLARKLPHDKSVYLKPGEKVLNWTAGPVGDLKPW" gene 24418111..24419611 /locus_tag="TCM_014773" /note="dbxref CacaoGD:Thecc1EG014773" mRNA join(24418111..24418614,24418715..24418773, 24419060..24419177,24419346..24419480,24419582..24419611) /locus_tag="TCM_014773" /product="Rubredoxin-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008662001" /inference="similar to AA sequence:Phytozome:POPTR_0015s11940.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc825t11" CDS join(24418388..24418614,24418715..24418773, 24419060..24419177,24419346..24419430) /locus_tag="TCM_014773" /codon_start=1 /product="Rubredoxin-like superfamily protein" /protein_id="EOY22670.1" /db_xref="Phytozome:POPTR_0015s11940.1" /db_xref="TAIR:AT5G51010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICB9" /translation="MALQGPIKSLRPASPLAPTGNVGLRAPSDRFALKSAYFSPSLHL LLPSPQQLPTATAPRFSMRVASKQAYICRDCGYIYNERTPFEKVPDSYFCPVCGAPKR RFRPYQPAVARNANDMDVRKARKEQMKRDEAIGKALPIAIVVGIAALAGLYFYLNNTI VG" gene complement(24419820..24422536) /locus_tag="TCM_014774" /note="dbxref CacaoGD:Thecc1EG014774" mRNA complement(join(24419820..24420113,24420210..24420302, 24420525..24420629,24420960..24421052,24421332..24421382, 24421528..24421563,24421650..24421710,24421972..24422021, 24422130..24422536)) /locus_tag="TCM_014774" /product="JHL07K02.6 protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014395" /inference="similar to AA sequence:ricco:30147.m014395" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04721t00001" CDS complement(join(24419973..24420113,24420210..24420302, 24420525..24420629,24420960..24421052,24421332..24421382, 24421528..24421563,24421650..24421710,24421972..24422021, 24422130..24422309)) /locus_tag="TCM_014774" /note="dbxref ricco:30147.m014395" /codon_start=1 /product="JHL07K02.6 protein" /protein_id="EOY22671.1" /db_xref="TAIR:AT5G51020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NU06" /translation="MGRGSESESESDSNGWSRARGLVVKTLVLIGGAILLKRLTKSTT RWDHARIVARSLSGEKFSREQASRDPDNYFNIRALTCPAAEMVDGSKVLYFEQAFWRT PQKPFRQRFYMVKPCPKDLKCDVEVSSYAIRDVEEYKNFCDRPRDQRPLPEEVIGDIA EHLTTIYLKRCERGKRCLYEGSTPPGGFPNSWNGATYCTSELSILKNNEIHTWDRGYD DDGNQVWGVKEGPYEFKPAPASSFNGMFSPLNFPPSEPMEKRIEGSFVLQE" mobile_element complement(24423147..24423855) /note="source:CACAO_on_E373_scaffold_1 1 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(24423697..24424713) /locus_tag="TCM_014775" /note="dbxref CacaoGD:Thecc1EG014775" mRNA complement(join(24423697..24424076,24424156..24424713)) /locus_tag="TCM_014775" /product="Transferring glycosyl groups, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s11960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008307t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s11960.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05921t00001_C1" CDS complement(join(24423892..24424076,24424156..24424621)) /locus_tag="TCM_014775" /note="paralog of Thecc1EG008307t1" /codon_start=1 /product="Transferring glycosyl groups, putative" /protein_id="EOY22672.1" /db_xref="Phytozome:POPTR_0015s11960.1" /db_xref="TAIR:AT3G23760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L9Q7" /translation="MASAVKPIFIFLVFISFHLSLMASKSKDPTPAAWPLQFHSILFM NNSGTLQKVDLWYDWPNGRNFNIIQNQLGKLVYDLEWDNGTSYIYSPDSDKECRVLHF PVGILRPNWLDGANYLGQQEKDGFLCNVWEKVDFIRYYEDVITKRPVYWAFYTGYTAH VMTFEVGAVLGDSHWQAPVYCFEEAEENRKPVIESVGWSGQQWKLMKGIPRASMTL" gene complement(24425066..24427443) /locus_tag="TCM_014776" /note="dbxref CacaoGD:Thecc1EG014776" mRNA complement(join(24425066..24425587,24425676..24425744, 24426930..24427056,24427151..24427258,24427340..24427443)) /locus_tag="TCM_014776" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene33415" /inference="similar to AA sequence:ricco:30147.m014394" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8924t2" CDS complement(join(24425441..24425587,24425676..24425744, 24426930..24427056,24427151..24427258,24427340..24427425)) /locus_tag="TCM_014776" /note="dbxref ricco:30147.m014394" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22673.1" /db_xref="TAIR:AT5G51040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICC1" /translation="MATLRRALLNAHRILNSSTVPSRTTIVIRPQYGWVSRFSSTNIS NTQPLDIDLSSEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHIYSMDENGIKALV HVLDLENPDLWKWLTGQEQPPETVSINPVFSTVQEKVLKNLNSHSAPETRATPGQPWV RGWDDIKKGRDSPITGNQ" gene complement(24428119..24431073) /locus_tag="TCM_014778" /note="dbxref CacaoGD:Thecc1EG014778" mRNA complement(join(24428119..24428832,24429638..24429832, 24430006..24430264,24430863..24431073)) /locus_tag="TCM_014778" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s11200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019852t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11200.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07326t00001" CDS complement(join(24428437..24428832,24429638..24429832, 24430006..24430264,24430863..24430957)) /locus_tag="TCM_014778" /note="paralog of Thecc1EG019852t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY22674.1" /db_xref="Phytozome:POPTR_0012s11200.1" /db_xref="TAIR:AT5G51030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBL1" /translation="MTGKKEKAKEKREKRLQEISLLRTIPYSDHQRWWSQETIAVVTG ANRGIGFEIARQLAGHGLTVILTSRDTSVGIEAAKVLQEGGFNVDVHQLDVLDGESIS EFTEWIKEKYGGIDILVNNAGVNYNLGSDNSVQFAQQVVDTNYYGTKNMIKAMIPLMR PSAAGARIVNVSSRLGKLNGRRNRIQDANLREELFNLDTLSEELIDRTVSTFLQQVED DTWQSGGWPQTFTDYSISKLAVNAYTRLVAKELSDRPEGEKIYINCYCPGWVKTAMTG WAGNISAEDAADTGVWLALLPDVAITGKFFAERREVNF" gene 24432481..24437426 /locus_tag="TCM_014779" /note="dbxref CacaoGD:Thecc1EG014779" mRNA join(24432481..24433080,24433647..24433775, 24434433..24435279,24435368..24435526,24436297..24436551, 24436975..24437426) /locus_tag="TCM_014779" /product="MtN19-like protein, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G61820.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s12000.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc606t2" CDS join(24432896..24433080,24433647..24433775, 24434433..24435279,24435368..24435526,24436297..24436551, 24436975..24437112) /locus_tag="TCM_014779" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="MtN19-like protein, putative isoform 1" /protein_id="EOY22675.1" /db_xref="Phytozome:POPTR_0015s12000.1" /db_xref="TAIR:AT5G61820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLS7" /translation="MNSANGCVVDSTLRSPIKVDREMKGWGQKVLMVGDNGDRSSRFR PQLKEMGDGHCSPHLDRCLNFERSDEWCTQTQRWLKLSQKRSGTVLYEFSEDSSFKFL LHWKMKIYNRGQLLLVGILLTLSLQAIWGKENKIKTAVFLSPKFELGPGSVENRYYYD MDFPKGHIALKSFNGEVIDEAGNPVPLHETYLHHWVVARYYARKGVDVSKFNESKKLH RSDYISGRNSGICQGGVLGQYFGLGSETRRTATHVPDPYGIEVGNPSEIPSGFEEIWL LNIHAIDTRGVEDRLGCTECRCDLYNVTEDEYGRPLRPDYKGGLSCCYDRTQCRLKQG FEGVRRTLYLRYTVKWVDIDSSIVPVKIYIFDITDSWKRSGNSTGINAEHHCKVEYDV ESCSTTGLADDGCVDTKRISLDMPFGGYVIYGVAHQHSGGSGSALYRENGQLLCSSIP TYGEGEEAGNEAGYIVGMSTCYPQPGTVKISKGETLILESNYSSIGHHTGVMGLFYIL VADALPKPMRTLRVVVQTQDSIILLTILWAAVALMGVVTVVAVAIRYQLKHEREDGYE AIMM" mRNA join(24433305..24433427,24433533..24433720, 24434433..24435279,24435368..24435526,24436297..24436551, 24436975..24437255) /locus_tag="TCM_014779" /product="MtN19-like protein, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G61820.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s12000.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00963t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc606t2" CDS join(24433380..24433427,24433533..24433720, 24434433..24435279,24435368..24435526,24436297..24436551, 24436975..24437112) /locus_tag="TCM_014779" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="MtN19-like protein, putative isoform 2" /protein_id="EOY22676.1" /db_xref="Phytozome:POPTR_0015s12000.1" /db_xref="TAIR:AT5G61820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLS7" /translation="MEIAVLLANECSRHISVVRKQCCHQKARGEDPCTPLTLNPIDII STTKAWAIVQPELRAFRRVVHADAAVVEVISETFGKMKIYNRGQLLLVGILLTLSLQA IWGKENKIKTAVFLSPKFELGPGSVENRYYYDMDFPKGHIALKSFNGEVIDEAGNPVP LHETYLHHWVVARYYARKGVDVSKFNESKKLHRSDYISGRNSGICQGGVLGQYFGLGS ETRRTATHVPDPYGIEVGNPSEIPSGFEEIWLLNIHAIDTRGVEDRLGCTECRCDLYN VTEDEYGRPLRPDYKGGLSCCYDRTQCRLKQGFEGVRRTLYLRYTVKWVDIDSSIVPV KIYIFDITDSWKRSGNSTGINAEHHCKVEYDVESCSTTGLADDGCVDTKRISLDMPFG GYVIYGVAHQHSGGSGSALYRENGQLLCSSIPTYGEGEEAGNEAGYIVGMSTCYPQPG TVKISKGETLILESNYSSIGHHTGVMGLFYILVADALPKPMRTLRVVVQTQDSIILLT ILWAAVALMGVVTVVAVAIRYQLKHEREDGYEAIMM" gene 24438876..24443651 /locus_tag="TCM_014780" /note="dbxref CacaoGD:Thecc1EG014780" mRNA join(24438876..24438901,24439015..24439548, 24441701..24442486,24442632..24442725,24442902..24443641) /locus_tag="TCM_014780" /product="Mitochondrial substrate carrier family protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G61810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017372t1" /inference="similar to AA sequence:ricco:30147.m014390" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc890t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc890t4" mRNA join(24438896..24438901,24439015..24439548, 24441701..24442486,24442635..24442725,24442902..24443651) /locus_tag="TCM_014780" /product="Mitochondrial substrate carrier family protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G61810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017372t1" /inference="similar to AA sequence:ricco:30147.m014390" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc890t4" CDS join(24439104..24439548,24441701..24442486, 24442632..24442725,24442902..24443094) /locus_tag="TCM_014780" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014390; paralog of Thecc1EG017372t1" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 2" /protein_id="EOY22678.1" /db_xref="TAIR:AT5G51050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI43" /translation="MSGAAGPVEHVGLPKMEAKSKPGCCNPVKKPGPVSMDHVLLALR ETKEERDLRIRSLFNFFDAANVGFLDYAQIEKGLSALQIPAEYKYAKDLLKVCDANRD GRVDYHEFKRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEIDDEELARF VEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKH VKRSKYFIAGGIAGAASRTATAPLDRLKVVLQVQTTRACILPAVKKIWKQDGLLGFFR GNGLNVVKVAPESAIKFYAYEMLKNVMGDSMGYKKGDIGASGRLIAGGVAGAVAQSAI YPMDLVKTRLQTCASEGGRAPKLGKLTRDIWVQEGPRAFYKGLVPSLLGIIPYAGIDL AAYETLKDFSRTYILQDGEDPGPLVQLGCGTVSGALGATCVYPLQVIRTRLQAQHATS AAAYKGMSDVFWRTLQNEGYRGFYKGLVPNLLKVVPAASITYLVYEAMKKSLDLD" CDS join(24439104..24439548,24441701..24442486, 24442635..24442725,24442902..24443094) /locus_tag="TCM_014780" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014390; paralog of Thecc1EG017372t1" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 1" /protein_id="EOY22677.1" /db_xref="TAIR:AT5G51050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI43" /translation="MSGAAGPVEHVGLPKMEAKSKPGCCNPVKKPGPVSMDHVLLALR ETKEERDLRIRSLFNFFDAANVGFLDYAQIEKGLSALQIPAEYKYAKDLLKVCDANRD GRVDYHEFKRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEIDDEELARF VEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKH VKRSKYFIAGGIAGAASRTATAPLDRLKVVLQVQTTRACILPAVKKIWKQDGLLGFFR GNGLNVVKVAPESAIKFYAYEMLKNVMGDSMGYKKGDIGASGRLIAGGVAGAVAQSAI YPMDLVKTRLQTCASEGGRAPKLGKLTRDIWVQEGPRAFYKGLVPSLLGIIPYAGIDL AAYETLKDFSRTYILQDGDPGPLVQLGCGTVSGALGATCVYPLQVIRTRLQAQHATSA AAYKGMSDVFWRTLQNEGYRGFYKGLVPNLLKVVPAASITYLVYEAMKKSLDLD" gene 24444847..24448293 /locus_tag="TCM_014781" /note="dbxref CacaoGD:Thecc1EG014781" mRNA join(24444847..24445033,24446496..24446739, 24447535..24448277) /locus_tag="TCM_014781" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12060.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11280.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12124t00001" CDS join(24446536..24446739,24447535..24448020) /locus_tag="TCM_014781" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22679.1" /db_xref="Phytozome:POPTR_0012s11280.1" /db_xref="TAIR:AT5G07330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I433" /translation="MWAQPATVRILPVTAFVVPAQISSRTPAHYLVLINKPSPEHITE GPVPVITLNNLRDVTEVLCRDTWLGYLKQLANRLGGDATYATSTAPKMKSYAPTADFG YGQDVKPQKQVRGDFVPVYVAIGMIALSVTLGLKTALHQLKNSPQVRVNKKRRETLPE VEEPDRVLDEADKFLKQSFFRKVTHFQENDSAYAFHDSTRRDIFTHGPTPRAETLKSV GVDPKFRVLEG" mRNA join(24447238..24447446,24447535..24448293) /locus_tag="TCM_014781" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008267t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11280.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12124t00001; inference alignment:Newbler:10:TSA:cgbaB_g12124t00001" CDS join(24447429..24447446,24447535..24448020) /locus_tag="TCM_014781" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG008267t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY22680.1" /db_xref="Phytozome:POPTR_0012s11280.2" /db_xref="TAIR:AT5G07330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I433" /translation="MAFRSAGYLKQLANRLGGDATYATSTAPKMKSYAPTADFGYGQD VKPQKQVRGDFVPVYVAIGMIALSVTLGLKTALHQLKNSPQVRVNKKRRETLPEVEEP DRVLDEADKFLKQSFFRKVTHFQENDSAYAFHDSTRRDIFTHGPTPRAETLKSVGVDP KFRVLEG" gene 24449161..24450258 /locus_tag="TCM_014782" /note="dbxref CacaoGD:Thecc1EG014782" mRNA 24449161..24450258 /locus_tag="TCM_014782" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" CDS 24449708..24450052 /locus_tag="TCM_014782" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22681.1" /translation="MLSKVSKKSRKEVGNASTNLNKSHKEISKVLSKISNRTDKRVFG DAAHSIRLIFWREDNGFMTLAHPPSQPSSPMAAPLCRLPLLSIGNFLPHLHIHHHNPL LRWLPPPFVKLR" gene complement(24450759..24454333) /locus_tag="TCM_014783" /note="dbxref CacaoGD:Thecc1EG014783" mRNA complement(join(24450759..24450956,24452096..24452161, 24453153..24453491,24453810..24454333)) /locus_tag="TCM_014783" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.28 coverage" gene 24452451..24453715 /locus_tag="TCM_014784" /note="dbxref CacaoGD:Thecc1EG014784" mRNA join(24452451..24452720,24453075..24453715) /locus_tag="TCM_014784" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.34 coverage" CDS join(24452617..24452720,24453075..24453207) /locus_tag="TCM_014784" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22683.1" /translation="MNGGNAFFFPVLSIYVAWASSCLQVINLFKNRVRRLSQGKVRES LPLNSDDADPKIPNAITYKRGILVQNRKSVVICG" CDS complement(join(24453299..24453491,24453810..24453838)) /locus_tag="TCM_014783" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22682.1" /translation="MQMASTRLLSTAQGAYRHEIFKKLMSTNMPHTLAKMTFNQLKGC KKLRCRGPKNNSRARKQIFHFSTSHRPKL" gene 24455436..24459100 /locus_tag="TCM_014785" /note="dbxref CacaoGD:Thecc1EG014785" mRNA join(24455436..24455701,24455789..24455858, 24456669..24457795,24457884..24457955,24458040..24458153, 24458251..24459100) /locus_tag="TCM_014785" /product="Calnexin 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014384" /inference="similar to AA sequence:ricco:30147.m014384" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03665t00001" CDS join(24455618..24455701,24455789..24455858, 24456669..24457795,24457884..24457955,24458040..24458153, 24458251..24458379) /locus_tag="TCM_014785" /note="dbxref ricco:30147.m014384" /codon_start=1 /product="Calnexin 1" /protein_id="EOY22684.1" /db_xref="TAIR:AT5G61790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38798" /translation="MMMGRFALLLLLSFASLQLLCFAADDDAVFYDSFDESFDGRWIV SDKDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVNELDEPVSLTDGTTVLQFETRLQ NGLECGGAYLKYLRPQEAGWKPKEFDNDSPYSIMFGPDKCGATNKVHFILKHKNPKSG DYVEHHLKYPPSVPSDKLTHVYTAILKPDNEVRILVDGEEKKKANLLSAEDFEPPLIP AKTIPDPDDKKPEDWDEREKIPDPNAVKPDDWDEDAPMEIEDEDAVKPEGWLDDEPEE IDDPEATKPEDWDDEEDGEWEAPKIDNPKCDAAPGCGEWKKPMKRNPAYKGKWSPPLI DNPNYKGRWKPQEIPNPNYFELDKPDFEPIAAIGIEIWTMQDGILFDNILIAKNEKAA ESYRETAWKPKFEVEKEKQKAEDEVAGSDGLAGFQKKVFDVLYKVADIPFLSKYKLQI LDLIEKAEKQPNLTIGVLVSIVVIILTAFFKLIFGGKKQPRVEKKTEVAETSNDQGSS GEKAEEEEKEETTAAPRRRRRDT" gene complement(24459125..24468349) /locus_tag="TCM_014786" /note="dbxref CacaoGD:Thecc1EG014786" mRNA complement(join(24459125..24459458,24461222..24461871, 24462103..24462480,24462966..24463160,24463238..24463318, 24463390..24463578,24463654..24463884,24463981..24464346, 24464424..24464621,24464729..24464899,24465691..24465798, 24465878..24466093,24466196..24466402,24466516..24466620, 24466707..24466820,24466919..24466993,24467271..24467445, 24467849..24468349)) /locus_tag="TCM_014786" /product="TUDOR-SN protein 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12080.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s12080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8291t1" mRNA complement(join(24461447..24461857,24462103..24462480, 24462966..24463160,24463238..24463318,24463383..24463578, 24463654..24463884,24463981..24464346,24464424..24464621, 24464729..24464899,24465691..24465798,24465878..24466093, 24466196..24466402,24466516..24466620,24466707..24466820, 24466919..24466993,24467271..24467445,24467849..24468057)) /locus_tag="TCM_014786" /product="TUDOR-SN protein 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005677001" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12080.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s12080.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc140t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8291t1" mRNA complement(join(24461447..24461868,24462103..24462480, 24462966..24463160,24463238..24463318,24463380..24463578, 24463654..24463884,24463981..24464346,24464424..24464621, 24464729..24464899,24465691..24465798,24465878..24466093, 24466196..24466402,24466516..24466620,24466707..24466820, 24466919..24466993,24467271..24467445,24467849..24468057)) /locus_tag="TCM_014786" /product="TUDOR-SN protein 1 isoform 2" /inference="similar to AA sequence:Phytozome:POPTR_0015s12080.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc140t4" CDS complement(join(24461677..24461871,24462103..24462480, 24462966..24463160,24463238..24463318,24463390..24463578, 24463654..24463884,24463981..24464346,24464424..24464621, 24464729..24464899,24465691..24465798,24465878..24466093, 24466196..24466402,24466516..24466620,24466707..24466820, 24466919..24466993,24467271..24467429)) /locus_tag="TCM_014786" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="TUDOR-SN protein 1 isoform 1" /protein_id="EOY22685.1" /db_xref="Phytozome:POPTR_0015s12080.1" /db_xref="TAIR:AT5G07350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K6N0" /translation="MAASTAGGTGWYKGRVKAVPSGDCLVVMAMSSNRPGPTPEKTVT LASLIAPRLARRGGVDEPFAWESREYLRKLCIGKEITFRVEYAVPSIGREFGSVYLGD KNVAMLVVSEGWAKVREQGQQKGEASPFLAELLRLEEQAKQQGLGRWSKVPGAAEAAI RNLPPSAIGDPGNLDAMGLLAANKGRPMQGIVEQVRDGSTVRVYLLPDFQFVQVFVAG IQAPSMGRRAAVETVVETELTSDEQNGDVSAEPRAPLTSAQRLTASSAASAEVAPDPF GAEAKYFTEVRCLHRDVRIVLEGVDKFSNLIGSVYYPDGETAKDLALELVENGLAKYV EWSANMMEDDAKRRLKAAELQAKKTRLRIWTNYVPPATNSKAIRDQNFTGKVVEVVSG DCIIVADDSVPYGSPLAERRVNLSSIRCPKMGNPRRDEKPAAYAREAREFLRTRLIGK QVNVQMEYARKVTMADGATATTAPADSRVMDFGSVFLMSPVKGDGDDATAVAPSTAGT QQPGLNVAELVVGRGFGTVIRHRDFEERSNYYDTLLAAESRAISGKKGIHSAKDPPVM HITDLTTSSAKKARDFLPFLHRSRRIPAVVEYVLSGHRFKLLIPKETCSIAFSFSGVR CPGRDEPYSDEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWESRTNMAVTLLEAGL AKLQTSFGADRIADAHLLEQAEQSAKRQKLKIWENYVEGEEVSNGPATVENKQKEVLK VVVTEVLGGGKFYVQTVGDQRVSSIQQQLASLNIQEAPVIGAFNPKKGEFVLAQFSMD NSWNRAMVVNAPRGGVESPNDKFEVFYLDYGNQEEVPYSQLRPLDASVSATAGLAQLC SLAFLKVPGLEDEFGTEAAQFLSEQTLGSSLQFRAMVEERDASGGKVKGQGTGTVLIV TLVAEKSELSINAAMLQEGLARLEKRKKWEPKDRKSVLDSLEAFQNEAKTARRGIWQY GDVESDDEDTLPPVAAKKTGGRR" mRNA complement(join(24461837..24461987,24462147..24462480, 24462966..24463160,24463238..24463318,24463383..24463578, 24463654..24463884,24463981..24464346,24464424..24464621, 24464729..24464899,24465691..24465798,24465878..24466093, 24466196..24466402,24466516..24466620,24466707..24466820, 24466919..24466993,24467271..24467445,24467849..24468057)) /locus_tag="TCM_014786" /product="TUDOR-SN protein 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005677001" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12080.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s12080.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc140t8; alternateUTRof:Thecc1EG014786t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8291t1" CDS complement(join(24463299..24463318,24463383..24463578, 24463654..24463884,24463981..24464346,24464424..24464621, 24464729..24464899,24465691..24465798,24465878..24466093, 24466196..24466402,24466516..24466620,24466707..24466820, 24466919..24466993,24467271..24467429)) /locus_tag="TCM_014786" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="TUDOR-SN protein 1 isoform 3" /protein_id="EOY22687.1" /db_xref="Phytozome:POPTR_0015s12080.1" /db_xref="TAIR:AT5G07350.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K6N0" /translation="MAASTAGGTGWYKGRVKAVPSGDCLVVMAMSSNRPGPTPEKTVT LASLIAPRLARRGGVDEPFAWESREYLRKLCIGKEITFRVEYAVPSIGREFGSVYLGD KNVAMLVVSEGWAKVREQGQQKGEASPFLAELLRLEEQAKQQGLGRWSKVPGAAEAAI RNLPPSAIGDPGNLDAMGLLAANKGRPMQGIVEQVRDGSTVRVYLLPDFQFVQVFVAG IQAPSMGRRAAVETVVETELTSDEQNGDVSAEPRAPLTSAQRLTASSAASAEVAPDPF GAEAKYFTEVRCLHRDVRIVLEGVDKFSNLIGSVYYPDGETAKDLALELVENGLAKYV EWSANMMEDDAKRRLKAAELQAKKTRLRIWTNYVPPATNSKAIRDQNFTGKVVEVVSG DCIIVADDSVPYGSPLAERRVNLSSIRCPKMGNPRRDEKPAAYAREAREFLRTRLIGK QVNVQMEYARKVTMADGATATTAPADSRVMDFGSVFLMSPVKGDGDDATAVAPSTAGT QQPGLNVAELVVGRGFGTVIRHRDFEERSNYYDTLLAAESRAISGKKGIHSAKDPPVM HITDLTTSSAKKARDFLPFLHRSRRIPAVVEYVLSGHRFKLLIPKETCSIAFSFSGVR CPGRDEPYSDEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWESRTNMAVTLLEAGL AKLQTSFGADRIADAHLLEQAEQSAKRQKLKVRNLGELC" CDS complement(join(24463299..24463318,24463383..24463578, 24463654..24463884,24463981..24464346,24464424..24464621, 24464729..24464899,24465691..24465798,24465878..24466093, 24466196..24466402,24466516..24466620,24466707..24466820, 24466919..24466993,24467271..24467429)) /locus_tag="TCM_014786" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="TUDOR-SN protein 1 isoform 3" /protein_id="EOY22688.1" /db_xref="Phytozome:POPTR_0015s12080.1" /db_xref="TAIR:AT5G07350.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K6N0" /translation="MAASTAGGTGWYKGRVKAVPSGDCLVVMAMSSNRPGPTPEKTVT LASLIAPRLARRGGVDEPFAWESREYLRKLCIGKEITFRVEYAVPSIGREFGSVYLGD KNVAMLVVSEGWAKVREQGQQKGEASPFLAELLRLEEQAKQQGLGRWSKVPGAAEAAI RNLPPSAIGDPGNLDAMGLLAANKGRPMQGIVEQVRDGSTVRVYLLPDFQFVQVFVAG IQAPSMGRRAAVETVVETELTSDEQNGDVSAEPRAPLTSAQRLTASSAASAEVAPDPF GAEAKYFTEVRCLHRDVRIVLEGVDKFSNLIGSVYYPDGETAKDLALELVENGLAKYV EWSANMMEDDAKRRLKAAELQAKKTRLRIWTNYVPPATNSKAIRDQNFTGKVVEVVSG DCIIVADDSVPYGSPLAERRVNLSSIRCPKMGNPRRDEKPAAYAREAREFLRTRLIGK QVNVQMEYARKVTMADGATATTAPADSRVMDFGSVFLMSPVKGDGDDATAVAPSTAGT QQPGLNVAELVVGRGFGTVIRHRDFEERSNYYDTLLAAESRAISGKKGIHSAKDPPVM HITDLTTSSAKKARDFLPFLHRSRRIPAVVEYVLSGHRFKLLIPKETCSIAFSFSGVR CPGRDEPYSDEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWESRTNMAVTLLEAGL AKLQTSFGADRIADAHLLEQAEQSAKRQKLKVRNLGELC" CDS complement(join(24463299..24463318,24463380..24463578, 24463654..24463884,24463981..24464346,24464424..24464621, 24464729..24464899,24465691..24465798,24465878..24466093, 24466196..24466402,24466516..24466620,24466707..24466820, 24466919..24466993,24467271..24467429)) /locus_tag="TCM_014786" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="TUDOR-SN protein 1 isoform 2" /protein_id="EOY22686.1" /db_xref="Phytozome:POPTR_0015s12080.1" /db_xref="TAIR:AT5G07350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K6N0" /translation="MAASTAGGTGWYKGRVKAVPSGDCLVVMAMSSNRPGPTPEKTVT LASLIAPRLARRGGVDEPFAWESREYLRKLCIGKEITFRVEYAVPSIGREFGSVYLGD KNVAMLVVSEGWAKVREQGQQKGEASPFLAELLRLEEQAKQQGLGRWSKVPGAAEAAI RNLPPSAIGDPGNLDAMGLLAANKGRPMQGIVEQVRDGSTVRVYLLPDFQFVQVFVAG IQAPSMGRRAAVETVVETELTSDEQNGDVSAEPRAPLTSAQRLTASSAASAEVAPDPF GAEAKYFTEVRCLHRDVRIVLEGVDKFSNLIGSVYYPDGETAKDLALELVENGLAKYV EWSANMMEDDAKRRLKAAELQAKKTRLRIWTNYVPPATNSKAIRDQNFTGKVVEVVSG DCIIVADDSVPYGSPLAERRVNLSSIRCPKMGNPRRDEKPAAYAREAREFLRTRLIGK QVNVQMEYARKVTMADGATATTAPADSRVMDFGSVFLMSPVKGDGDDATAVAPSTAGT QQPGLNVAELVVGRGFGTVIRHRDFEERSNYYDTLLAAESRAISGKKGIHSAKDPPVM HITDLTTSSAKKARDFLPFLHRSRRIPAVVEYVLSGHRFKLLIPKETCSIAFSFSGVR CPGRDEPYSDEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWESRTNMAVTLLEAGL AKLQTSFGADRIADAHLLEQAEQSAKRQKLKVRSDLGELC" gene complement(24471276..24477440) /locus_tag="TCM_014787" /note="dbxref CacaoGD:Thecc1EG014787" mRNA complement(join(24471276..24471773,24471896..24472129, 24472645..24472869,24473058..24473228,24473343..24473479, 24473682..24473836,24473933..24474056,24474457..24474557, 24474637..24474719,24474801..24475025,24475123..24475224, 24476099..24476774,24477347..24477440)) /locus_tag="TCM_014787" /product="Glutamyl-tRNA(Gln) amidotransferase subunit A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025060" /inference="similar to AA sequence:Phytozome:GSVIVT01019284001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc590t6" mRNA complement(join(24471276..24471773,24471896..24472129, 24472645..24472869,24473058..24473228,24473343..24473479, 24473682..24473836,24473933..24474056,24474457..24474557, 24474637..24474719,24474801..24475025,24475123..24475224, 24475391..24476774,24477347..24477440)) /locus_tag="TCM_014787" /product="Amidase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025060" /inference="similar to AA sequence:Phytozome:GSVIVT01019284001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:PASA:2:TSA:puevd3b014284t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc590t6" mRNA complement(join(24471324..24471773,24471896..24472129, 24472645..24472869,24473058..24473228,24473343..24473479, 24473682..24473836,24473933..24474056,24474457..24474557, 24474637..24474719,24474801..24475025,24475123..24475224, 24476099..24476750,24477347..24477376)) /locus_tag="TCM_014787" /product="Glutamyl-tRNA(Gln) amidotransferase subunit A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025060" /inference="similar to AA sequence:Phytozome:GSVIVT01019284001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc590t2; alternateUTRof:Thecc1EG014787t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc590t6" CDS complement(join(24471645..24471773,24471896..24472129, 24472645..24472869,24473058..24473228,24473343..24473479, 24473682..24473836,24473933..24474056,24474457..24474557, 24474637..24474719,24474801..24475025,24475123..24475224, 24476099..24476338)) /locus_tag="TCM_014787" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Glutamyl-tRNA(Gln) amidotransferase subunit A isoform 1" /protein_id="EOY22689.1" /db_xref="Phytozome:GSVIVT01019284001" /db_xref="TAIR:AT5G07360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K6N3" /translation="MKGPRPTPPGNMAASFLDMCPDMSFPLPRFRSSLVLTLLSSLAV CSAFLSEFQPRRDCTNNTSPVLPESHRLLANTCPKMDSKNSSECSKKVVEVSQIRCAL ALLDADFFNDTKVLEIAKAAKEFNIPIVRANRKLVASVNGGLHNPSPLVFNPEWSKEQ SQDKAGRFNHPLTLGTRRPKNEEDIAFMSVLELGELIKTKQITSRELTRIFLKRLKRY NPVLEAVITYTEDLAYKQAQEADKLLSKGVYLGPLHGIPYGLKDIISVPHYNTTWGSQ TFKNQVLNMEAWVYKRLKSAGAILVAKLVTGSLAYDDIWFGGRTRNPWNIEEFSTGSS AGPAACTSAGMVPFAIGSETAGSITFPAARCGVTALRPTFGTVGRTGVMSLSESLDKL GPFCRYAADCAVILDAIRGKDPDDHSSRDIPFGDPFSVDITKLTVGYLEDADKEVVHV LESKGVKLVPFKLNYSVNSVQGILNFTMDVDMLAHFDEWQRSGKDDEYEAQDQWPLEL RRARVVSAVDYVQAQRARGKLIQEVKESFTVDAFIGNATDWERVCMGNLVGLPVIVLP TGFTSISNPPSNGTRRRTTVNTGIYAPPNHDHIALALAMAYQSVTSHHKQRPPIDDLG PNDTIPNPPTVTIPPRR" CDS complement(join(24471645..24471773,24471896..24472129, 24472645..24472869,24473058..24473228,24473343..24473479, 24473682..24473836,24473933..24474056,24474457..24474557, 24474637..24474719,24474801..24475025,24475123..24475224, 24476099..24476338)) /locus_tag="TCM_014787" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Glutamyl-tRNA(Gln) amidotransferase subunit A isoform 1" /protein_id="EOY22691.1" /db_xref="Phytozome:GSVIVT01019284001" /db_xref="TAIR:AT5G07360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K6N3" /translation="MKGPRPTPPGNMAASFLDMCPDMSFPLPRFRSSLVLTLLSSLAV CSAFLSEFQPRRDCTNNTSPVLPESHRLLANTCPKMDSKNSSECSKKVVEVSQIRCAL ALLDADFFNDTKVLEIAKAAKEFNIPIVRANRKLVASVNGGLHNPSPLVFNPEWSKEQ SQDKAGRFNHPLTLGTRRPKNEEDIAFMSVLELGELIKTKQITSRELTRIFLKRLKRY NPVLEAVITYTEDLAYKQAQEADKLLSKGVYLGPLHGIPYGLKDIISVPHYNTTWGSQ TFKNQVLNMEAWVYKRLKSAGAILVAKLVTGSLAYDDIWFGGRTRNPWNIEEFSTGSS AGPAACTSAGMVPFAIGSETAGSITFPAARCGVTALRPTFGTVGRTGVMSLSESLDKL GPFCRYAADCAVILDAIRGKDPDDHSSRDIPFGDPFSVDITKLTVGYLEDADKEVVHV LESKGVKLVPFKLNYSVNSVQGILNFTMDVDMLAHFDEWQRSGKDDEYEAQDQWPLEL RRARVVSAVDYVQAQRARGKLIQEVKESFTVDAFIGNATDWERVCMGNLVGLPVIVLP TGFTSISNPPSNGTRRRTTVNTGIYAPPNHDHIALALAMAYQSVTSHHKQRPPIDDLG PNDTIPNPPTVTIPPRR" CDS complement(join(24471645..24471773,24471896..24472129, 24472645..24472869,24473058..24473228,24473343..24473479, 24473682..24473836,24473933..24474056,24474457..24474557, 24474637..24474719,24474801..24475025,24475123..24475224, 24475391..24475510)) /locus_tag="TCM_014787" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Amidase family protein isoform 2" /protein_id="EOY22690.1" /db_xref="Phytozome:GSVIVT01019284001" /db_xref="TAIR:AT5G07360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K6N3" /translation="MCFRPFDTLMKAHQTWILDSVLNYLLHRRYFPSYTTSIKQDSKN SSECSKKVVEVSQIRCALALLDADFFNDTKVLEIAKAAKEFNIPIVRANRKLVASVNG GLHNPSPLVFNPEWSKEQSQDKAGRFNHPLTLGTRRPKNEEDIAFMSVLELGELIKTK QITSRELTRIFLKRLKRYNPVLEAVITYTEDLAYKQAQEADKLLSKGVYLGPLHGIPY GLKDIISVPHYNTTWGSQTFKNQVLNMEAWVYKRLKSAGAILVAKLVTGSLAYDDIWF GGRTRNPWNIEEFSTGSSAGPAACTSAGMVPFAIGSETAGSITFPAARCGVTALRPTF GTVGRTGVMSLSESLDKLGPFCRYAADCAVILDAIRGKDPDDHSSRDIPFGDPFSVDI TKLTVGYLEDADKEVVHVLESKGVKLVPFKLNYSVNSVQGILNFTMDVDMLAHFDEWQ RSGKDDEYEAQDQWPLELRRARVVSAVDYVQAQRARGKLIQEVKESFTVDAFIGNATD WERVCMGNLVGLPVIVLPTGFTSISNPPSNGTRRRTTVNTGIYAPPNHDHIALALAMA YQSVTSHHKQRPPIDDLGPNDTIPNPPTVTIPPRR" mRNA complement(join(24472767..24472793,24473058..24473228, 24473343..24473479,24473682..24473836,24473933..24474056, 24474457..24474557,24474637..24474719,24474801..24475025, 24475123..24475224,24476099..24476750,24477347..24477376)) /locus_tag="TCM_014787" /product="Glutamyl-tRNA(Gln) amidotransferase subunit A isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025060" /inference="similar to AA sequence:frave:gene01811" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc575t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc590t6" CDS complement(join(24472785..24472793,24473058..24473228, 24473343..24473479,24473682..24473836,24473933..24474056, 24474457..24474557,24474637..24474719,24474801..24475025, 24475123..24475224,24476099..24476338)) /locus_tag="TCM_014787" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene01811" /codon_start=1 /product="Glutamyl-tRNA(Gln) amidotransferase subunit A isoform 4" /protein_id="EOY22692.1" /db_xref="TAIR:AT5G07360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K6N3" /translation="MKGPRPTPPGNMAASFLDMCPDMSFPLPRFRSSLVLTLLSSLAV CSAFLSEFQPRRDCTNNTSPVLPESHRLLANTCPKMDSKNSSECSKKVVEVSQIRCAL ALLDADFFNDTKVLEIAKAAKEFNIPIVRANRKLVASVNGGLHNPSPLVFNPEWSKEQ SQDKAGRFNHPLTLGTRRPKNEEDIAFMSVLELGELIKTKQITSRELTRIFLKRLKRY NPVLEAVITYTEDLAYKQAQEADKLLSKGVYLGPLHGIPYGLKDIISVPHYNTTWGSQ TFKNQVLNMEAWVYKRLKSAGAILVAKLVTGSLAYDDIWFGGRTRNPWNIEEFSTGSS AGPAACTSAGMVPFAIGSETAGSITFPAARCGVTALRPTFGTVGRTGVMSLSESLDKL GPFCRYAADCAVILDAIRGKDPDDHSSRDIPFGDPFSVDITKLTVGYLEDADKEVS" gene 24477244..24480390 /locus_tag="TCM_014788" /note="dbxref CacaoGD:Thecc1EG014788" mRNA join(24477244..24477573,24478604..24480390) /locus_tag="TCM_014788" /product="Inositol polyphosphate kinase 2 beta" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12100.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s12100.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01099t00001" CDS 24478631..24479545 /locus_tag="TCM_014788" /codon_start=1 /product="Inositol polyphosphate kinase 2 beta" /protein_id="EOY22693.1" /db_xref="Phytozome:POPTR_0015s12100.1" /db_xref="TAIR:AT5G61760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTP4" /translation="MLKVPEHQVAGHRAINGNLGPVIDNSGRFYKPLLDDERGSTELA FYKSFCSDTRVPDHIRRFFPVFYGTQDLEASDGSGFRSHLVLQDLASNHRNPSIMDVK IGSRTWYPEASEDYIQKCLEKDRKTTTVSLGFRISGLQIYESKESGFWKPEKKQVQSF TADNVRLVLRKFVSSNSSIGSNENPDCSLASIVYGGSAGILEQLLELKAWFEDQTIYH FHSCSVLILFDKESVLKGRTPVAEVKLIDFAHVVEGRDVIDHNFLGGLCSLIKFVSEI LSISKESSIKACFTELEKKCYCTNNGNY" gene 24480780..24482254 /locus_tag="TCM_014789" /note="dbxref CacaoGD:Thecc1EG014789" mRNA 24480780..24482254 /locus_tag="TCM_014789" /product="RmlC-like cupins superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene01813" /inference="similar to AA sequence:ricco:30147.m014379" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15126t00001" CDS 24481196..24481996 /locus_tag="TCM_014789" /note="dbxref ricco:30147.m014379" /codon_start=1 /product="RmlC-like cupins superfamily protein, putative" /protein_id="EOY22694.1" /db_xref="TAIR:AT5G61750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CV43" /translation="MISSSELQASDNNFQFLQPLNETYINTRTSKLTSIASQQYTKMN STLLLFIIFCTSINICLADSGNLQDACPTDMKAKQTTFVNGFPCKNPSSIIAPDFKTS DINHTGDTDNFLHSSVNILTAADFPGLNTLGLSIARTDLDLDGMVMPHSHPRASELFF LRKGIVLAGFLDSNNTLFQSLIKGGDVFLFPRGLLHFCLNAGYEPATAFSVLNSQNSG VVSIAGALFETNSELIDKITRKLISVPVSELKHIRNATLAKFSRIHIQ" gene 24482525..24488790 /locus_tag="TCM_014790" /note="dbxref CacaoGD:Thecc1EG014790" mRNA join(24482525..24482657,24482738..24482860, 24482940..24483063,24483533..24483666,24483747..24483891, 24484458..24484636,24485409..24485649,24485870..24485968, 24486188..24486333,24486533..24486640,24487114..24487202, 24488031..24488790) /locus_tag="TCM_014790" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene01813" /inference="similar to AA sequence:Phytozome:GSVIVT01014990001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1794t2" CDS join(24482589..24482657,24482738..24482860, 24482940..24483063,24483533..24483666,24483747..24483891, 24484458..24484636,24485409..24485649,24485870..24485968, 24486188..24486333,24486533..24486640,24487114..24487202, 24488031..24488547) /locus_tag="TCM_014790" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22695.1" /db_xref="Phytozome:GSVIVT01014990001" /db_xref="TAIR:AT5G07380.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PDZ3" /translation="MVLVCFLLDLCSLSSPLLRDLKQSLLQLANLYTVSWNWRNKSDS LGDRIGLCYVIKNRISSSDELKVAYSPRVDFSLRDFHHAVNSLPTDSFFPEINDSGSL SCHAMKLASVLSDQVLYSWGGKDIMRKVIVLSSFLPENIDSALKETLMDAADKCVSVE FVLLEQRSNHLSDIRENINSFARCISDLDNCSFQSYLPEVKVFHGLVKQWLQDLRDDT EEPLQARFIFNSNLAGSLKQISCNLSASVNHIIDGFNPCKTCRCHGVPLCNAEKSRIE GPSCAVTFHDLGAIDVIDNSVKVGENTILFMPSFQSSMKLQQVSSPVDFNIIERTNLG SLSEGVIFGNPYFVTPSASPEIEAASDEMDQLELNFQLFKGLCSALQSLDQGLVCSSN CNIESMREATFHCYYILQPSDNGPMLLRRLAGSEEVLPFSDVNQFIDHSVPKEIEISI QSSLFKLDSRDYNPVLYERGFHQKLNLLVKESLQFGSVPPNTNEATSELYTTKPDPTK LIAQSTSSDDVVVVNEEMSQLDQLAGEEKTTASIDEEWERLVVHEVPVKNSPTCTAKP NSGQSVLLLSPPDSSRQLDITTTRILERLEVPRQLKSKAVSPSINSSRTADVNMPMKK PLIPFQPNHAADQGLTSSQLIRPSFQRQKRKHK" gene complement(24488712..24495506) /locus_tag="TCM_014791" /note="dbxref CacaoGD:Thecc1EG014791" mRNA complement(join(24488712..24489295,24489843..24490384, 24491685..24491743,24491946..24492048,24492191..24492306, 24492398..24492493,24492581..24492964,24493076..24493501, 24493602..24493715,24493910..24493958,24494080..24494236, 24494336..24495506)) /locus_tag="TCM_014791" /product="NADPH/respiratory burst oxidase protein D" /inference="alignment:exonerate- protein:2:ricco:30147.m014377" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034030t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11340.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00517t00004" CDS complement(join(24489186..24489295,24489843..24490384, 24491685..24491743,24491946..24492048,24492191..24492306, 24492398..24492493,24492581..24492964,24493076..24493501, 24493602..24493715,24493910..24493958,24494080..24494236, 24494336..24494912)) /locus_tag="TCM_014791" /note="paralog of Thecc1EG034030t1" /codon_start=1 /product="NADPH/respiratory burst oxidase protein D" /protein_id="EOY22696.1" /db_xref="Phytozome:POPTR_0012s11340.1" /db_xref="TAIR:AT5G51060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FIJ0" /translation="MQEMTAEDGNRYQHHHHHSDTEVLAGDKVPHSGPLSGPLNKRAG KKSARFSVPDSTSSKDDGYVEITLDVRDDSVAVHSVKAANGADLQEDPELTLLAKGLE KRSTVGSSMVRNASAKIRQVGHELKRLTSFSKKPARFDRTKSAAAHALKGLKFITKTD GGHGWAAVEKRFDEITASNNGALPRARFGECIGMESKEFAGQLFDALARKRNIQGDSI DKAHLKEFWDQISNQSFDARLQTFFEMVDKDADGRITEEEVKEIISLSASANKLSNIQ KQAEEYAALIMEELDPDHLGYIMINNLEMLLLQAPNQSVRGESRNLSQMLSQKLKPTY DSNPVTRFLLDTKYFLLDNWQRVWVMALWIGVMCGLFTYKYIEYRRRGDVFKVMGHCV CFAKGAAETLKLNMALILLPVCRNTITWLRNKTKLGAAVPFDDNLNFHKVIAVAISIG VGIHAISHLACDFPRLLHATPDEYEPMIKYFGKQPESYWHFVKHPEGVTGIVMVVLMA IAFTLAAPCFRRGRMDLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGIKLFLTQKWY KKTTWMYLAVPVTLYLCERLTRLLRSSIKPVIIQKVAVYPGNVLALHMSRPNGFRYKS GQYMFVNCAAVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTRQLRTVFSEVCQQPTNG KSGLLRADNKPDFPRVLIDGPYGAPAQDYKKYEVVLLVGLGIGATPMISIVKDIVNNI RAREEEESALENGNADGVNKTSPPNSKRKESFKTRRAYFYWVTREQGSFDWFKGIMNE VAEMDHNHVIELHNYCTSVYEEGDARSALIAMLQSLNHAKNGVDVVSGTRVKSHFAKP NWRSVYKQIAVNHNNTRVGVFYCGPPALTKELGQLASDFSHRTSTKFDFHKENF" gene 24496023..24506347 /locus_tag="TCM_014793" /note="dbxref CacaoGD:Thecc1EG014793" mRNA join(24496023..24496499,24497945..24499763, 24500071..24500205,24500296..24500440,24501045..24501317, 24501553..24501814,24502242..24502408,24502534..24502644, 24503184..24503235,24503318..24503427,24504028..24504156, 24505135..24505224,24505423..24505469,24505557..24506347) /locus_tag="TCM_014793" /product="Forkhead-associated domain-containing protein / FHA domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s11350.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11350.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc144t5" CDS join(24498367..24499763,24500071..24500205, 24500296..24500440,24501045..24501317,24501553..24501814, 24502242..24502408,24502534..24502644,24503184..24503235, 24503318..24503427,24504028..24504156,24505135..24505224, 24505423..24505469,24505557..24506127) /locus_tag="TCM_014793" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Forkhead-associated domain-containing protein / FHA domain-containing protein, putative isoform 1" /protein_id="EOY22697.1" /db_xref="Phytozome:POPTR_0012s11350.1" /db_xref="TAIR:AT5G07400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I441" /translation="MKDSVFSFPNKNKKRTEENPHFPRKKPKTLNKSAFIELKSFDLP LLSTTTGSPIYLLRLESDRPYIIGRANSSCDFTFDSRFVSKQHCQILYDSVDRKIFIL DGTILLDDLSFFVSEFRRRFLLSDDELEDKEKEKETEILGFSRVRVSLNGVYVNGVRV KRGMVRELFAGDEVLLVCGNESECSLRVRIGFMIQGIVFKEEVVSDLDEVPGVRPLLL GAMASSRHSQGTLSSGKRNKRVFAISSNEMTIGCDLSGFKSRDVMGRAKFILSHCCSI LHSDDPISCIRQCDISDSGRNRFLGLTLSNRMEFAIGREEEVGSIFPLCRQEPQSSDK KDSPVQPNSFKIMTTSEANHSLIGDLLPSDLPCGEGTVEGCGKDATANYRPGMSSLNC AEKENAPDIDGVGTSKTFMSSCSAPGKMFYLNRLAYLDCGSSNHHTLVSLHELLYPVE SISKIFIATFTSDILWFLSHCEIPCHLPVTVACHNAERCWSSSPDARSSMPFPDFPNL VVVFPPFPEVIAFGNDRKKRGIACHHPKLLVLQREDSIRVVITSANLVAKQWESVTNT VWWQDFPHRSESDYLSLFSFSYGEMSQGSRSDFGAQLAGFMASLIVDVPSQAHWIVEL TKYDFTSAEGHLVASIPGIHSDRILKANQFTTSSFDAKFLGLVEASVVGLSHLFRTAA DTNAALLKKLALFLGKTCENAYGMLDVVLRRNTNIPADENAVSVLVPNPDELSGRDCI QLGFLPRNVAKWVSPLWDMGFFEFHGYVYREEALTATFGGNNKKVQLVLHVSQGPRFF DLSKLMQAQNIVALCSLIASVQRCTGLWRLQEVLGRYKWPESQESDFIYGASSIGSSV SAQFLAAFAASVGKKSSQIFDSEESDPEWGCWTASQEVRNPSIKILFPTIERVKNACN GISPTRKILCFSEKTWQRLRNVGILHDAVPSPCNREGHPMHVKDITVECSLTCLLNPR LKKLNEHSANTKQVARRRFWSKTGSSSFGWVYCGSHNFSAAAWGRPISGSVGIKASGL DKTKSLITSRLHICNYELGIIFLFPPTETKCIANQSSTKLDDIALPFVVPAPKYGSRD RPATAQAMREALAELSERKTKSLVEVEITENMMEEVPDEDEEVSEATNYVAEEKEEDK TYAEKLWSQVDSSQSC" mRNA join(<24498394..24499763,24500071..24500205, 24500296..24500440,24501045..24501317,24501553..24501814, 24502242..24502408,24502534..24502644,24503184..24503235, 24503318..24503427,24504028..24504156,24505135..24505224, 24505594..>24505868) /locus_tag="TCM_014793" /product="Forkhead-associated domain-containing protein / FHA domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s11350.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11350.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc144t5; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc144t5; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc239t12" CDS join(<24498394..24499763,24500071..24500205, 24500296..24500440,24501045..24501317,24501553..24501814, 24502242..24502408,24502534..24502644,24503184..24503235, 24503318..24503427,24504028..24504156,24505135..24505224, 24505594..>24505866) /locus_tag="TCM_014793" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Forkhead-associated domain-containing protein / FHA domain-containing protein, putative isoform 2" /protein_id="EOY22698.1" /db_xref="Phytozome:POPTR_0012s11350.1" /db_xref="TAIR:AT5G07400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I441" /translation="NKNKKRTEENPHFPRKKPKTLNKSAFIELKSFDLPLLSTTTGSP IYLLRLESDRPYIIGRANSSCDFTFDSRFVSKQHCQILYDSVDRKIFILDGTILLDDL SFFVSEFRRRFLLSDDELEDKEKEKETEILGFSRVRVSLNGVYVNGVRVKRGMVRELF AGDEVLLVCGNESECSLRVRIGFMIQGIVFKEEVVSDLDEVPGVRPLLLGAMASSRHS QGTLSSGKRNKRVFAISSNEMTIGCDLSGFKSRDVMGRAKFILSHCCSILHSDDPISC IRQCDISDSGRNRFLGLTLSNRMEFAIGREEEVGSIFPLCRQEPQSSDKKDSPVQPNS FKIMTTSEANHSLIGDLLPSDLPCGEGTVEGCGKDATANYRPGMSSLNCAEKENAPDI DGVGTSKTFMSSCSAPGKMFYLNRLAYLDCGSSNHHTLVSLHELLYPVESISKIFIAT FTSDILWFLSHCEIPCHLPVTVACHNAERCWSSSPDARSSMPFPDFPNLVVVFPPFPE VIAFGNDRKKRGIACHHPKLLVLQREDSIRVVITSANLVAKQWESVTNTVWWQDFPHR SESDYLSLFSFSYGEMSQGSRSDFGAQLAGFMASLIVDVPSQAHWIVELTKYDFTSAE GHLVASIPGIHSDRILKANQFTTSSFDAKFLGLVEASVVGLSHLFRTAADTNAALLKK LALFLGKTCENAYGMLDVVLRRNTNIPADENAVSVLVPNPDELSGRDCIQLGFLPRNV AKWVSPLWDMGFFEFHGYVYREEALTATFGGNNKKVQLVLHVSQGPRFFDLSKLMQAQ NIVALCSLIASVQRCTGLWRLQEVLGRYKWPESQESDFIYGASSIGSSVSAQFLAAFA ASVGKKSSQIFDSEESDPEWGCWTASQEVRNPSIKILFPTIERVKNACNGISPTRKIL CFSEKTWQRLRNVGILHDAVPSPCNREGHPMHVKVARRRFWSKTGSSSFGWVYCGSHN FSAAAWGRPISGSVGIKASGLDKTKSLITSRLHICNYELGIIFLFPPTETKCIANQSS TKLDDIALP" mobile_element complement(24503470..24503679) /note="source:INTACT383F_F354_scaffold_3-int 909 1112" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 24503871..24504003 /note="source:scaffold_1_CACTA_0008 12953 13081" /mobile_element_type="transposon:TIR/CACTA" gene 24506384..24508945 /locus_tag="TCM_014794" /note="dbxref CacaoGD:Thecc1EG014794" mRNA 24506384..24508945 /locus_tag="TCM_014794" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s11360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007072t1" /inference="similar to AA sequence:Phytozome:GSVIVT01023345001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc249t11" CDS 24506440..24508701 /locus_tag="TCM_014794" /note="paralog of Thecc1EG007072t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY22699.1" /db_xref="Phytozome:GSVIVT01023345001" /db_xref="TAIR:AT4G33990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I442" /translation="MSNSRCQLTQLHVLLPSLTKGSKKHDPGSRNKPKVMHRLGSWHR YHFHVSCKPLVNPSSLASLNTNYAFNSFHDLTENLCNRLLNSCNGSALLKQIHSSLTA SGIIKRNSHLGAQIIIKYAKFGDNNSARSVFDTILGDKSNSFLWNTMIRAYANGGCHV EALELYSFMRKTDIAPNNYTFPFVLKACASKSLIIEGKVVHGDAIRTGFDFDLYVEAA LVDMYAKCGQTDEGFKIFDKMLMRDLVCWTAMITAYEQAEQPHKALLLFQKMQLDGVL ADAVAIVSVASAVGQLGDTMKAKIVHAYAICNGFLADVSVENAIIAMYAKCGNVSKAR LVFDLMEERDGISWNSMLSCYTQNGQASEALLLFEEMLDSGCKPNPVTALIMVSACAY LGSQHLGRKLHNLVIDEKIKIDATLRNALMDMYAKCGDLDTATRIFNDIHLSERNATS WNVVISGYGMHGYGKEALNLFSQMLQAGVEPDHITFTSLLSACGHAGLIDEGRKCFAD MKKHSVTPQAKHYACMVDMLGRAGLLNEAFDMIQQMPIPQSDGVWGALLLACRIHGDT ELGEIAARSLFQLEPEHAGYYVLMSNIYAASNRWQEVGKLRQDMKDRGLRKPSAFSVI EFGKEVHGFLTADRVNPYWQEVYRKVESMAVEMKMVGYVPDLSCVLHDVEEEDKEYIL SYHSEKLAVAFGIMKIDPEIAIHITKNLRICSDCHSAFKFVSYVYGRKIVVRDANRFH HFQDGTCSCNDYW" mobile_element 24508855..24509540 /note="source:CACAO_hAT_E2547_scaffold_5 3 699" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24509232..24509575) /note="source:CACAO_on_E201_scaffold_1 269 594" /mobile_element_type="transposon:TIR/hAT" mobile_element 24509543..24510254 /note="source:CACAO_hAT_E2547_scaffold_5 36 707" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24509996..24510304) /note="source:MITE_hAT_3 231 563" /mobile_element_type="transposon:TIR/MITE" mobile_element 24510038..24510534 /note="source:MITE_hAT_12 565 1071" /mobile_element_type="transposon:TIR/MITE" gene 24510614..24517667 /locus_tag="TCM_014795" /note="dbxref CacaoGD:Thecc1EG014795" mRNA join(24510614..24510681,24511453..24512698, 24513119..24513279,24513379..24513608,24513747..24513855, 24513932..24514062,24514445..24514546,24514633..24514914, 24514989..24515086,24515196..24515490,24515895..24516128, 24516310..24516543,24516830..24517667) /locus_tag="TCM_014795" /product="Clp ATPase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s11370.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014739t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11370.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5903t3" mobile_element complement(24510889..24511086) /note="source:scaffold_1_CACTA_0008 7166 7373" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24510960..24511155 /note="source:INTACT383F_F354_scaffold_3-int 864 1072" /mobile_element_type="retrotransposon:LTR/Unclassified" mRNA join(24511495..24512698,24513119..24513279, 24513379..24513608,24513747..24513855,24513932..24514062, 24514445..24514546,24514633..24514914,24514989..24515086, 24515196..>24515570) /locus_tag="TCM_014795" /product="Clp ATPase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s11370.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0012s11370.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1087t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5903t3" mRNA join(24511509..24512698,24513119..24513279, 24513379..24513608,24513747..24513855,24513932..24514062, 24514445..24514546,24514633..24514914,24514989..24515086, 24515196..24515486,24515895..24516128,24516310..24516336) /locus_tag="TCM_014795" /product="Clp ATPase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s11370.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0012s11370.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1076t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5903t3" mRNA join(24511922..24512698,24513119..24513279, 24513379..24513608,24513747..24513855,24513932..24514062, 24514442..24514546,24514633..24514914,24514989..24515086, 24515196..24515490,24515894..24516129,24516310..24516543, 24516830..24517305) /locus_tag="TCM_014795" /product="Clp ATPase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s11370.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0012s11370.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5903t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5903t3" CDS join(24512052..24512698,24513119..24513279, 24513379..24513608,24513747..24513855,24513932..24514062, 24514445..24514546,24514633..24514914,24514989..24515086, 24515196..24515490,24515895..24516128,24516310..24516543, 24516830..24517141) /locus_tag="TCM_014795" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014739t1" /codon_start=1 /product="Clp ATPase isoform 1" /protein_id="EOY22700.1" /db_xref="Phytozome:POPTR_0012s11370.1" /db_xref="TAIR:AT5G51070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42762" /translation="MEVLCSSSLPIHSRCLFSHPSSPTRLPFQFHPNNNNSISSSNSS CFGLSISRYNNFIRVKHSHSRKRRKPLHTSAVFERFTERAIKAVILSQREAKSLGKDM VFTQHLLLGLIGEDRDPNGFLGSGIKIDKAREAVRSIWQSSNPDSGEDTGSRSGKQEG SIVSSTDVPFSISTKRVFEAAVEYSRTMGYNFIAPEHIAIGLLTVDDGSAGRVLKRLG ADLNHLADAAVTRLQGELAKDGREPSVPSKKMREKSLSGNATVLRSPDKARGKSALAQ FCVDLTARAIEGLIDPVIGRETEVQRVVQILCRRTKNNPILLGESGVGKTAIAEGLAI SIAEAETPAFLLNKRIMSLDIGLLMAGAKERGELEARVTALLSETIKSGDVILFIDEV HTLIGSGTVGRGNKGSGLDIANLLKPALGRGELQCIASTTIGEYRTQFEKDKALARRF QPVWINEPSQEDAVRILLGLREKYEFHHHCRYTLEAINAAVYLSARYIPDRYLPDKAI DLIDEAGSRARIEAFKRKREQETGILSKAPNDYWQEIRTVQAMHEVVMANRLKHDDGA SNEDDSSELLLESPLTSDNDEPIMVGPEEIAAIASVWSGIPVQQITADERVLLLGLDE QLKKRVIGQDEAVAAISRAVKRSRVGLKDPDRPIAAMIFCGPTGVGKTELTKALAACY FGSEDAMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGMLTEAIRRRPFTLLLLDEIE KAHPDIFNILLQLFEDGHLTDSQGRRVSFKNALVVMTSNVGSSAIAKGRHGSIGFLLE DDKSTSYAGMKALVMEELKAYFRPELLNRIDEVVVFRSLEKAQMLEIVNLMLQEVKAR IMSLGIGLEVSESIKDLICEQGYDQTFGARPLRRAVTSIVEDPLSEALLAGDYRPGET AVIDLDASGNPIVTIRSDRNISLSDTASIF" CDS join(24512052..24512698,24513119..24513279, 24513379..24513608,24513747..24513855,24513932..24514062, 24514445..24514546,24514633..24514914,24514989..24515086, 24515196..24515486,24515895..24515922) /locus_tag="TCM_014795" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Clp ATPase isoform 3" /protein_id="EOY22702.1" /db_xref="Phytozome:POPTR_0012s11370.1" /db_xref="TAIR:AT5G51070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42762" /translation="MEVLCSSSLPIHSRCLFSHPSSPTRLPFQFHPNNNNSISSSNSS CFGLSISRYNNFIRVKHSHSRKRRKPLHTSAVFERFTERAIKAVILSQREAKSLGKDM VFTQHLLLGLIGEDRDPNGFLGSGIKIDKAREAVRSIWQSSNPDSGEDTGSRSGKQEG SIVSSTDVPFSISTKRVFEAAVEYSRTMGYNFIAPEHIAIGLLTVDDGSAGRVLKRLG ADLNHLADAAVTRLQGELAKDGREPSVPSKKMREKSLSGNATVLRSPDKARGKSALAQ FCVDLTARAIEGLIDPVIGRETEVQRVVQILCRRTKNNPILLGESGVGKTAIAEGLAI SIAEAETPAFLLNKRIMSLDIGLLMAGAKERGELEARVTALLSETIKSGDVILFIDEV HTLIGSGTVGRGNKGSGLDIANLLKPALGRGELQCIASTTIGEYRTQFEKDKALARRF QPVWINEPSQEDAVRILLGLREKYEFHHHCRYTLEAINAAVYLSARYIPDRYLPDKAI DLIDEAGSRARIEAFKRKREQETGILSKAPNDYWQEIRTVQAMHEVVMANRLKHDDGA SNEDDSSELLLESPLTSDNDEPIMVGPEEIAAIASVWSGIPVQQITADERVLLLGLDE QLKKRVIGQDEAVAAISRAVKRSRVGLKDPDRPIAAMIFCGPTGVGKTELTKALAACY FGRMPCLDWT" CDS join(24512052..24512698,24513119..24513279, 24513379..24513608,24513747..24513855,24513932..24514062, 24514442..24514546,24514633..24514914,24514989..24515086, 24515196..24515490,24515894..24515911) /locus_tag="TCM_014795" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Clp ATPase isoform 2" /protein_id="EOY22701.1" /db_xref="Phytozome:POPTR_0012s11370.1" /db_xref="TAIR:AT5G51070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42762" /translation="MEVLCSSSLPIHSRCLFSHPSSPTRLPFQFHPNNNNSISSSNSS CFGLSISRYNNFIRVKHSHSRKRRKPLHTSAVFERFTERAIKAVILSQREAKSLGKDM VFTQHLLLGLIGEDRDPNGFLGSGIKIDKAREAVRSIWQSSNPDSGEDTGSRSGKQEG SIVSSTDVPFSISTKRVFEAAVEYSRTMGYNFIAPEHIAIGLLTVDDGSAGRVLKRLG ADLNHLADAAVTRLQGELAKDGREPSVPSKKMREKSLSGNATVLRSPDKARGKSALAQ FCVDLTARAIEGLIDPVIGRETEVQRVVQILCRRTKNNPILLGESGVGKTAIAEGLAI SIAEAETPAFLLNKRIMSLDIGLLMAGAKERGELEARVTALLSETIKSGDVILFIDEV HTLIGSGTVGRGNKGSGLDIANLLKPALGRGELQQCIASTTIGEYRTQFEKDKALARR FQPVWINEPSQEDAVRILLGLREKYEFHHHCRYTLEAINAAVYLSARYIPDRYLPDKA IDLIDEAGSRARIEAFKRKREQETGILSKAPNDYWQEIRTVQAMHEVVMANRLKHDDG ASNEDDSSELLLESPLTSDNDEPIMVGPEEIAAIASVWSGIPVQQITADERVLLLGLD EQLKKRVIGQDEAVAAISRAVKRSRVGLKDPDRPIAAMIFCGPTGVGKTELTKALAAC YFGSGGCHA" CDS join(24512052..24512698,24513119..24513279, 24513379..24513608,24513747..24513855,24513932..24514062, 24514445..24514546,24514633..24514914,24514989..24515086, 24515196..>24515568) /locus_tag="TCM_014795" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Clp ATPase isoform 4" /protein_id="EOY22703.1" /db_xref="Phytozome:POPTR_0012s11370.1" /db_xref="TAIR:AT5G51070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42762" /translation="MEVLCSSSLPIHSRCLFSHPSSPTRLPFQFHPNNNNSISSSNSS CFGLSISRYNNFIRVKHSHSRKRRKPLHTSAVFERFTERAIKAVILSQREAKSLGKDM VFTQHLLLGLIGEDRDPNGFLGSGIKIDKAREAVRSIWQSSNPDSGEDTGSRSGKQEG SIVSSTDVPFSISTKRVFEAAVEYSRTMGYNFIAPEHIAIGLLTVDDGSAGRVLKRLG ADLNHLADAAVTRLQGELAKDGREPSVPSKKMREKSLSGNATVLRSPDKARGKSALAQ FCVDLTARAIEGLIDPVIGRETEVQRVVQILCRRTKNNPILLGESGVGKTAIAEGLAI SIAEAETPAFLLNKRIMSLDIGLLMAGAKERGELEARVTALLSETIKSGDVILFIDEV HTLIGSGTVGRGNKGSGLDIANLLKPALGRGELQCIASTTIGEYRTQFEKDKALARRF QPVWINEPSQEDAVRILLGLREKYEFHHHCRYTLEAINAAVYLSARYIPDRYLPDKAI DLIDEAGSRARIEAFKRKREQETGILSKAPNDYWQEIRTVQAMHEVVMANRLKHDDGA SNEDDSSELLLESPLTSDNDEPIMVGPEEIAAIASVWSGIPVQQITADERVLLLGLDE QLKKRVIGQDEAVAAISRAVKRSRVGLKDPDRPIAAMIFCGPTGVGKTELTKALAACY FGSVRLHAIIHAFPSLKSVLKYSLSVVNF" gene 24517613..24521902 /locus_tag="TCM_014796" /note="dbxref CacaoGD:Thecc1EG014796" mRNA join(24517613..24518996,24520292..24520467, 24520559..24521902) /locus_tag="TCM_014796" /product="FRIGIDA-like protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014372" /inference="similar to AA sequence:ricco:30147.m014372" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04314t00001" mobile_element 24517687..24517781 /note="source:CACAO_Mariner_E69_scaffold_2 2108 2206" /mobile_element_type="transposon:TIR/Tc1-Mariner" CDS join(24518003..24518996,24520292..24520467, 24520559..24521404) /locus_tag="TCM_014796" /note="dbxref ricco:30147.m014372" /codon_start=1 /product="FRIGIDA-like protein, putative" /protein_id="EOY22704.1" /db_xref="TAIR:AT4G00650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RA29" /translation="MAAKPSVPFIKLNSPATILASIKQEPLQSPPSIPPREPIPEPLA VVKVEPEQNEQQQQPQEEEEEQQQQKEPQFLQSINDLATLSSVIHAFKCRFEELKEHL EFINQAIDSKFNEPQKEQRPKIETQPPAKSTETDNKTEKTGPETTPSKSSRSEIQNLC EMMCSKGLRKYIAAHLSNVSKLREEVPAALTLAPKPAKLVLDCIGRFFLQGIKAYTKD SPMIPARQASVLVLEFFLLMMGGFRGKGEVQIAADIKLEAEKGALAWRKRLISEGGLA RASEVDARGLLLYVACFGIPKAFRSEDLGNLLRLCNLRAIADALKGSHVLPVKMPDII EGMAKNGIYVEAVDVASIFGLEDKFSLKTILTLFLQESTKAFKKARQEAQNSPVALKK ANENQLDALKTIVQYLEDRSSDVTKLLGAWQIEEKIVKLEEENAELQKRINDKKIMPK RKLDETGSSSKAKSQEMKRPRFTAKGSPLPKSSHVNGLHEQRTATLADGMRSYDGLVA KTMDNAISGHVSNYPAASSVPHGSTVGSYPENGVGQMAGIGGVGSSSMVTGIGGLLAS SYSGAHLDMGVDKAGSSSDLPYGWRQGSVGQSASMRFGGLFGTSPSIEGFVGLPDFPS SGPTDRTTADLYRFVDSVVESETYSGSSHRTGTLQNVVPVRHSSYMF" gene 24521993..24530927 /locus_tag="TCM_014797" /note="dbxref CacaoGD:Thecc1EG014797" mRNA join(24521993..24522229,24522744..24522853, 24523552..24524477,24525768..24526161,24527054..24527142, 24528077..24528201,24528364..24528462,24528730..24528921, 24529135..24529401,24529502..24529604,24529699..24530015, 24530302..24530463,24530552..24530927) /locus_tag="TCM_014797" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12180.1.2" /inference="similar to AA sequence:Phytozome:GSVIVT01013851001" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1649t1_C2" CDS join(24522068..24522229,24522744..24522853, 24523552..24524477,24525768..24526161,24527054..24527142, 24528077..24528201,24528364..24528462,24528730..24528921, 24529135..24529401,24529502..24529604,24529699..24530015, 24530302..24530463,24530552..24530695) /locus_tag="TCM_014797" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY22705.1" /db_xref="Phytozome:GSVIVT01013851001" /db_xref="TAIR:AT4G33270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RA26" /translation="MVSSFPFLSDERGMPPYYIVETLDTKMKVKAAVVTLGLGLILAD LEGFCHGGLISGVGRYEVQTGRRDGLVSSTKNAVSPPPSASVSDTVLLDLGQFFRDNS VISQQTGIRASRSWVNLNLAMATSSTKYEIEKFNGRNDFSLWRVKMRALLVQQGLLKA LKGKEHLPSNLSDGEKDDLMKKAHSVILLALSDEVLREVTDEESAAAVWFKLESIYMT KSLTNRLYMKQRLYTLKMSEGTSVNTHIDEFNRVILDLKNIDVKIEDEDLALILLCYL PPSYENFVDTMLYGRDTLTFEDVRASLNFKELKKKVGGIRNENQAEGLVVNRGRGKEK GLDRKGKSRAKGKTCWNCGQKGHFRQDCTKFKDDEKFNKSENTANVVGDDFDTFEETD NVLAITNYQEVGKQVELEINALVTVRDDSEIQKELQEVQELVSQRSITCIDGDFDSYV LFVEVEIEEPYFYHEKIIYVESSKKIESLHWDQTWELVKTPKVTIEVGLVCEGGANIS RNVVGFSKSDFAGDLDSRRSQTGLDLGQFFRDNSAISQHIETTPYGYFILQAEGKDSR VFWNLKMDQSAMWKLLESDWYSPRRLHDSPTEYDFPGDRFLPNRSLMNLDKAHSLLTN RTKEFNTSKCDQVYRQKLIEHLSLHSEERPSRIMVFRGSPKSSRKSIRFVDEMRQEEA AMLDTDGKKTHYRCIPKGAKRILDAPGIRNDYYVNVMSWGKNNILAVALGPELYLWNS KDQSVHKLLHVRGNDCPTSVNWSEDAKTLAVGYMCSNLQLWDAESFKLIRSLQGHSGR IASTAWNGHILTSGSRDKSIINHDVRAVNNLASCIRKHTDEVCGLKWSTEGNMLATGG NENLLYIWEASKMSSSKYLHRLSDHCAAVKALAWCPYQHNVLASGGGLSDGCIKIWNT QKGTCINSVETKAQICGLEWNRHHKEILSGHGYSTSENQNKLCLWRYPSMTKVGELGN HSSRIINLCQSPDGVTVVSAEADETLRFWDVFGPPTAGSLSFTDLQGLLSLRTTLIR" mobile_element 24523144..24527101 /note="source:INTACT381F_F10_scaffold_3-int 1 3958" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24530796..24530833) /note="source:CACAO_hAT_E2821_scaffold_6 1512 1549" /mobile_element_type="transposon:TIR/hAT" gene complement(24530903..24533466) /locus_tag="TCM_014798" /note="dbxref CacaoGD:Thecc1EG014798" mRNA complement(join(24530903..24531370,24531488..24531511, 24531637..24531663,24531813..24531931,24532030..24532201, 24532275..24532463,24532757..24532831, 24533186..>24533296)) /locus_tag="TCM_014798" /product="Fe superoxide dismutase 2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014368" /inference="similar to AA sequence:ricco:30147.m014368" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5854t1; inference alignment:Newbler:10:TSA:cgbaP2_g09286t00001" mRNA complement(join(24530954..24531370,24531488..24531511, 24531637..24531663,24531813..24531931,24532030..24532201, 24532275..24532463,24532757..24532831,24533060..24533106, 24533186..24533466)) /locus_tag="TCM_014798" /product="Fe superoxide dismutase 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014368" /inference="similar to AA sequence:ricco:30147.m014368" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09286t00001" CDS complement(join(24531161..24531370,24531488..24531511, 24531637..24531663,24531813..24531931,24532030..24532201, 24532275..24532463,24532757..24532831, 24533186..>24533296)) /locus_tag="TCM_014798" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014368" /codon_start=1 /product="Fe superoxide dismutase 2 isoform 2" /protein_id="EOY22707.1" /db_xref="TAIR:AT5G51100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7MQX3" /translation="CRLPCPRFQKIPTNLLEEWRQLLPWLLHLRSRYFPPKRRFWRKV ATNLITAKFELKPPPYTLNALEPHMSRQTLEYHWGKHHRTYVENLNKQIAGTELEGLP LEDIIIVSYNNGDILPAFNNAAQAWNHDFFWESMKPGGGGKPSGDLLDLIERDFGSFE QFIQEFKSAAAAQFGSGWAWLAYKANRLDVENAVNPWPSEKDKKLVVVKSPNAVNPLV WDYFPLLTIDVWEHAYYLDFQNRRPDYISMFMEKLISWEAVSARLEKAKALAAEREME EERRKKEEEEKQTDGEAVEMYLDSDTDDSEAE" CDS complement(join(24531161..24531370,24531488..24531511, 24531637..24531663,24531813..24531931,24532030..24532201, 24532275..24532463,24532757..24532831,24533060..24533106, 24533186..24533243)) /locus_tag="TCM_014798" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014368" /codon_start=1 /product="Fe superoxide dismutase 2 isoform 1" /protein_id="EOY22706.1" /db_xref="TAIR:AT5G51100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7MQX3" /translation="MAAAASMATSLTFPLLPSQGLRGPFTSSLPCTIPQRRFWRKVAT NLITAKFELKPPPYTLNALEPHMSRQTLEYHWGKHHRTYVENLNKQIAGTELEGLPLE DIIIVSYNNGDILPAFNNAAQAWNHDFFWESMKPGGGGKPSGDLLDLIERDFGSFEQF IQEFKSAAAAQFGSGWAWLAYKANRLDVENAVNPWPSEKDKKLVVVKSPNAVNPLVWD YFPLLTIDVWEHAYYLDFQNRRPDYISMFMEKLISWEAVSARLEKAKALAAEREMEEE RRKKEEEEKQTDGEAVEMYLDSDTDDSEAE" gene complement(24534481..24536359) /locus_tag="TCM_014799" /note="dbxref CacaoGD:Thecc1EG014799" mRNA complement(join(24534481..24534793,24534952..24535144, 24535952..24536359)) /locus_tag="TCM_014799" /product="Pterin-4-alpha-carbinolamine dehydratase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013845001" /inference="similar to AA sequence:ricco:30147.m014367" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12381t00001; inference alignment:Newbler:10:TSA:cgbaP2_g12381t00001" CDS complement(join(24534702..24534793,24534952..24535144, 24535952..24536305)) /locus_tag="TCM_014799" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014367" /codon_start=1 /product="Pterin-4-alpha-carbinolamine dehydratase 1 isoform 1" /protein_id="EOY22708.1" /db_xref="TAIR:AT5G51110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU63" /translation="MASTATHLSLTLLLPRLSSPCPHHQHLVTKFSFPTRSRLAIRTR AMGTDFLGDFGARDPFPAELESGFGEKVLGNGNTEHKILIPKTSALSLAQQDCSPVSP LQAPMSVDDAKALMKKVVGWRLLDEEGGLKLQCLWKLRDFKCGVELINRIYKVIEATG HFPNLHLEEPNQVRAELWTASVGGLSMNDFIVAAKIDEIKTSDLAPHKRIWA" mRNA complement(join(24534769..24534863,24534952..24535144, 24535952..>24536288)) /locus_tag="TCM_014799" /product="Pterin-4-alpha-carbinolamine dehydratase 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013845001" /inference="similar to AA sequence:ricco:30147.m014367" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc924t2; inference alignment:Newbler:10:TSA:cgbaP2_g12381t00001" CDS complement(join(24534856..24534863,24534952..24535144, 24535952..>24536287)) /locus_tag="TCM_014799" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014367" /codon_start=1 /product="Pterin-4-alpha-carbinolamine dehydratase 1 isoform 2" /protein_id="EOY22709.1" /db_xref="TAIR:AT5G51110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU63" /translation="HLSLTLLLPRLSSPCPHHQHLVTKFSFPTRSRLAIRTRAMGTDF LGDFGARDPFPAELESGFGEKVLGNGNTEHKILIPKTSALSLAQQDCSPVSPLQAPMS VDDAKALMKKVVGWRLLDEEGGLKLQCLWKLRDFKCGVELINRIYKVIEATGHFPNLH LEEPNQVRAELWTASVAK" gene 24536669..24538107 /locus_tag="TCM_014800" /note="dbxref CacaoGD:Thecc1EG014800" mRNA join(24536669..24537559,24537703..24538107) /locus_tag="TCM_014800" /product="High mobility group protein TDP-1, putative" /inference="alignment:exonerate-protein:2:frave:gene21411" /inference="similar to AA sequence:frave:gene21411" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2918t1" CDS join(24536864..24537559,24537703..24537828) /locus_tag="TCM_014800" /note="dbxref frave:gene21411" /codon_start=1 /product="High mobility group protein TDP-1, putative" /protein_id="EOY22710.1" /translation="MAADFHSQEIPQKTVTPPSTPMPSMPLQLSGFLSGDTIQVEGDT GNLHFSVKFNVHNKCLSKNDSNFHFPSLNSLENDVSCQKSSFSSYVTPKSTQEIENRI VDSEPSMVENHGIETERTAKHDTTKRMAIMTRLRSGVISQVKYFPRISRKECRDLRSC MSMTMKRKRKKRETEDIVLEKLLQRRSCPVRPCSSYIFFVMASWGSVKCSSFGETSKR LSQMWCKLPHKDKKIYEDIALKDSARYRRQCMLLNCQVPDPSPRQNSSIDAHSAN" gene complement(24538057..24541150) /locus_tag="TCM_014801" /note="dbxref CacaoGD:Thecc1EG014801" mRNA complement(join(24538057..24538313,24538547..24538576, 24539329..24539660,24540616..24541150)) /locus_tag="TCM_014801" /product="Metacaspase 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene21410" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005785t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1622t4_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1623t2_C2" mRNA complement(join(24538081..24538313,24538547..24538750, 24538980..24539100,24539330..24539660,24540616..24541063)) /locus_tag="TCM_014801" /product="Metacaspase 1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21410" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005785t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11420.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1623t2_C2" CDS complement(join(24538254..24538313,24538547..24538750, 24538980..24539100,24539330..24539660,24540616..24540988)) /locus_tag="TCM_014801" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005785t1" /codon_start=1 /product="Metacaspase 1 isoform 1" /protein_id="EOY22711.1" /db_xref="Phytozome:POPTR_0012s11420.1" /db_xref="TAIR:AT1G02170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U738" /translation="MLMLVNCSNCHTPLQLPPGAKSIRCVLCQAVTLIADPRYAPSPS ASSSHYYQQPPPQLQGPSPYNHAPSGPPPQAHGSKRAVICGVSYKNTGYELKGCINDA NCMKYLLVNRFSFPESSIVTLTEEETDPHKRPTKHNIRMALNWLVQGCQPGDSLVFHY SGHGSQQRNYTGDEVDGYDETLCPTDFESQGMIVDDEINVTIVRPLPHGVKLHAIIDA CHSGTVLDLPFLCRMDGQGKYFWEDHRPRSGMWKGTSGGEVISFSGCDDNQTSADTSA LSRIASTGAMTFSFIQAIERGHATTYGNMLNAMRSTIHKTDEHEGGFISSLLTMLLTG GSLGGGLRQEPQLTASETFDVYKKPFSL" CDS complement(join(24538254..24538313,24538547..24538576, 24539329..24539660,24540616..24540988)) /locus_tag="TCM_014801" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005785t1" /codon_start=1 /product="Metacaspase 1 isoform 2" /protein_id="EOY22712.1" /translation="MLMLVNCSNCHTPLQLPPGAKSIRCVLCQAVTLIADPRYAPSPS ASSSHYYQQPPPQLQGPSPYNHAPSGPPPQAHGSKRAVICGVSYKNTGYELKGCINDA NCMKYLLVNRFSFPESSIVTLTEEETDPHKRPTKHNIRMALNWLVQGCQPGDSLVFHY SGHGSQQRNYTGDEVDGYDETLCPTDFESQGMIVDDEINVTIVRPLPHGVKLHAIIDA CHSGTVLDLPFLCRMDGGGSLGGGLRQEPQLTASETFDVYKKPFSL" mobile_element complement(24541854..24542564) /note="source:scaffold_2_CACTA_0244 13926 14627" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24543692..24543876 /note="source:INTACT446_F218_scaffold_9-int 7162 7351" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(24544235..24544325) /note="source:INTACT446_F218_scaffold_9-int 7252 7342" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 24545638..24545785 /note="source:INTACT446_F218_scaffold_9-int 7435 7578" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(24545987..24548596) /locus_tag="TCM_014802" /note="dbxref CacaoGD:Thecc1EG014802" mRNA complement(join(24545987..24546378,24546572..24546802, 24546904..24547024,24547131..24547464,24547968..24548596)) /locus_tag="TCM_014802" /product="Metacaspase 1, putative" /inference="alignment:exonerate- protein:2:frave:gene29712.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014801t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11420.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3901t1" CDS complement(join(24546319..24546378,24546572..24546802, 24546904..24547024,24547131..24547464,24547968..24548283)) /locus_tag="TCM_014802" /note="paralog of Thecc1EG014801t1" /codon_start=1 /product="Metacaspase 1, putative" /protein_id="EOY22713.1" /db_xref="Phytozome:POPTR_0012s11420.1" /db_xref="TAIR:AT1G02170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U738" /translation="MLTIVNCSRCHAPTLQLRTPGAKSIRCTTCKAVTLVKQLLSPSP YNHAPPGPLPQVHSSKRAVLCGVSYKNSRYELDGCVHDAELMKALLISQFKFPESSIV LLTEEESDPNRRPTKYNMRMALYWLVLGCQSGDSLVFYYSGHGSQQKNYDGDEKDGYD ETICPSDFETEGPIVDDEINWTIVRPLPRGVKLHAVIDACHSGTALDLPFLCRMDDRQ GGYVWEDHRPRSGLWKGTSGGEVISFSSCDDGQNSIQISSSNIPSTGAMTSCFIQAIL HGHGTTYWNLINAMRSMIFRMLLPQDEEEEEEEEGCCAILCFLATLLTGKSPTSGSRQ EPQLTASEPFDVETRLFSL" gene 24548691..24552725 /locus_tag="TCM_014803" /note="dbxref CacaoGD:Thecc1EG014803" mRNA join(24548691..24548834,24550245..24551032, 24551131..24551337,24551458..24551699,24551957..24552519) /locus_tag="TCM_014803" /product="Pectinesterase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g08690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004876t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11460.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02939t00001" mRNA join(24550425..24551032,24551131..24551337, 24551458..24551511,24551957..24552725) /locus_tag="TCM_014803" /product="Pectin lyase-like superfamily protein, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene14589" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g08690.1" /inference="similar to AA sequence:Phytozome:Glyma01g08730.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1323t1; inference alignment:Newbler:10:TSA:cgbaP1_g02939t00001" mRNA join(24550425..24551032,24551131..24551337, 24551488..24551511,24551957..24552725) /locus_tag="TCM_014803" /product="Pectin lyase-like superfamily protein, putative isoform 4" /inference="alignment:exonerate-protein:2:frave:gene14589" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g08690.1" /inference="similar to AA sequence:Phytozome:Glyma01g08730.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1323t3; inference alignment:Newbler:10:TSA:cgbaP1_g02939t00001" mRNA join(24550425..24551032,24551131..24551337, 24551488..24551699,24551957..>24551982) /locus_tag="TCM_014803" /product="Pectinesterase isoform 2" /inference="alignment:exonerate-protein:2:frave:gene14589" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g08690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004876t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11460.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1323t2; inference alignment:Newbler:10:TSA:cgbaP1_g02939t00001" CDS join(24550535..24551032,24551131..24551337, 24551458..24551699,24551957..24552116) /locus_tag="TCM_014803" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004876t1" /codon_start=1 /product="Pectinesterase, putative isoform 1" /protein_id="EOY22714.1" /db_xref="Phytozome:POPTR_0012s11460.1" /db_xref="TAIR:AT1G69940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICE2" /translation="MTGKRSRNIEVGAAICTILVLAPVVLSQNSSPIPVDKSQLKAWF NANIKPASARGSTIDPALAKAEVAAHIIKVKKDGSGDFDTITKAIASVPSGNTKRVII SIGGGSYREKIRIDRSKPFITFYGDPRNMPNLSYDGTARQYGTVDSATLIVESDYFVA ANIVIQNTAPRPDGVMVGAQAVSLRISGDKAAFYNCKIIGFQDTLCDDRGNHFFKDCY IRGTVDFIFGSGKSLYLNTVLYVDGQKGVTVITAQARESSSENTGYSFVHCTVTGTAS GAYLGRAWKTSPRVVFAYTNMSSVIHPLGWSDNLHPERAKTVFFGEYKCKGKGASFSG REKYAKRLTDGEAKPFLVLGFIDGAKWLLPPPRV" CDS join(24550535..24551032,24551131..24551337, 24551458..24551511,24551957..24552079) /locus_tag="TCM_014803" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pectin lyase-like superfamily protein, putative isoform 3" /protein_id="EOY22716.1" /db_xref="Phytozome:Glyma01g08730.1" /db_xref="TAIR:AT1G69940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICE2" /translation="MTGKRSRNIEVGAAICTILVLAPVVLSQNSSPIPVDKSQLKAWF NANIKPASARGSTIDPALAKAEVAAHIIKVKKDGSGDFDTITKAIASVPSGNTKRVII SIGGGSYREKIRIDRSKPFITFYGDPRNMPNLSYDGTARQYGTVDSATLIVESDYFVA ANIVIQNTAPRPDGVMVGAQAVSLRISGDKAAFYNCKIIGFQDTLCDDRGNHFFKDCY IRGTVDFIFGSGKSLYLNTVLYVDGQKGVTVITAQNCFLRRIQVQGKRSKFQWAGEIR QAANRRGSQTFPGSWLY" CDS join(24550535..24551032,24551131..24551337, 24551488..24551511,24551957..24552079) /locus_tag="TCM_014803" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Pectin lyase-like superfamily protein, putative isoform 4" /protein_id="EOY22717.1" /db_xref="Phytozome:Glyma01g08730.1" /db_xref="TAIR:AT1G69940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICE2" /translation="MTGKRSRNIEVGAAICTILVLAPVVLSQNSSPIPVDKSQLKAWF NANIKPASARGSTIDPALAKAEVAAHIIKVKKDGSGDFDTITKAIASVPSGNTKRVII SIGGGSYREKIRIDRSKPFITFYGDPRNMPNLSYDGTARQYGTVDSATLIVESDYFVA ANIVIQNTAPRPDGVMVGAQAVSLRISGDKAAFYNCKIIGFQDTLCDDRGNHFFKDCY IRGTVDFIFGSGKSLYLGVTVITAQNCFLRRIQVQGKRSKFQWAGEIRQAANRRGSQT FPGSWLY" CDS join(24550535..24551032,24551131..24551337, 24551488..24551699,24551957..>24551981) /locus_tag="TCM_014803" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004876t1" /codon_start=1 /product="Pectinesterase isoform 2" /protein_id="EOY22715.1" /db_xref="Phytozome:POPTR_0012s11460.1" /db_xref="TAIR:AT1G69940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U735" /translation="MTGKRSRNIEVGAAICTILVLAPVVLSQNSSPIPVDKSQLKAWF NANIKPASARGSTIDPALAKAEVAAHIIKVKKDGSGDFDTITKAIASVPSGNTKRVII SIGGGSYREKIRIDRSKPFITFYGDPRNMPNLSYDGTARQYGTVDSATLIVESDYFVA ANIVIQNTAPRPDGVMVGAQAVSLRISGDKAAFYNCKIIGFQDTLCDDRGNHFFKDCY IRGTVDFIFGSGKSLYLGVTVITAQARESSSENTGYSFVHCTVTGTASGAYLGRAWKT SPRVVFAYTNMSSVIHPLGWSDNLHPERAKTVFFGEYK" mobile_element complement(24554650..24555416) /note="source:scaffold_8_CACTA_0855 1771 2595" /mobile_element_type="transposon:TIR/CACTA" gene 24557104..24557868 /locus_tag="TCM_014804" /note="dbxref CacaoGD:Thecc1EG014804" mRNA join(24557104..24557472,24557631..24557868) /locus_tag="TCM_014804" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29738.m001008" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014806t1" /inference="similar to AA sequence:frave:gene21401" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5891t1" CDS join(24557154..24557472,24557631..24557647) /locus_tag="TCM_014804" /note="dbxref frave:gene21401; paralog of Thecc1EG014806t1" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /protein_id="EOY22718.1" /translation="MASSRCGVGLFILVLVVAGVFEVPVARGAMSPSQCKEEQRLLVS ACRSVLSGRSPSPSCCQRIRVTHVECVCPVVTPKLAALIGVERTIKQIEGCGRVVPHK FKCGSITTP" mobile_element complement(24558442..24559104) /note="source:CACAO_M_E4063_F12_scaffold_2 5037 5702" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24560434..24561185 /locus_tag="TCM_014805" /note="dbxref CacaoGD:Thecc1EG014805" mRNA join(24560434..24560821,24560984..24561185) /locus_tag="TCM_014805" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013894001" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8961t1" CDS join(24560633..24560821,24560984..24561160) /locus_tag="TCM_014805" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22719.1" /translation="MHAGRSYSAAAPQPPAANVSGSPTSSVCALLLPLSWLHSSEWNA PLSKSKAAEGLFLTTSSVEVSLLHEKGNKDHLRMTIYIYIYSLIVVFNKTFYLFNLYL CRCMYVKERDVYMMIFLLL" mobile_element 24561511..24561599 /note="source:scaffold_2_CACTA_0248 14090 14175" /mobile_element_type="transposon:TIR/CACTA" gene 24562839..24563620 /locus_tag="TCM_014806" /note="dbxref CacaoGD:Thecc1EG014806" mRNA join(24562839..24563221,24563435..24563620) /locus_tag="TCM_014806" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /inference="alignment:exonerate- protein:2:frave:gene21401.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014804t1" /inference="similar to AA sequence:frave:gene21405" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc4112t2" CDS join(24562906..24563221,24563435..24563451) /locus_tag="TCM_014806" /note="dbxref frave:gene21405; paralog of Thecc1EG014804t1" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /protein_id="EOY22720.1" /translation="MAGSWAGTVILVVVVVACVSEVPMGRGDMSPSQCKEEQRLLVNA CRAVIFGRSPSPSCCERVRVTHVECVCPVITPQLAALIGVERTIKQIEGCGRAVPHNF KCGSITTP" gene 24565855..24568309 /locus_tag="TCM_014807" /note="dbxref CacaoGD:Thecc1EG014807" mRNA join(24565855..24566228,24566326..24566428, 24566692..24566762,24567317..24567508,24567592..24567716, 24568244..24568309) /locus_tag="TCM_014807" /product="RNA-binding family protein" /inference="alignment:exonerate-protein:2:frave:gene21415" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001066t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11480.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6260t3" CDS join(24566073..24566228,24566326..24566428, 24566692..24566762,24567317..24567508,24567592..24567716, 24568244..24568289) /locus_tag="TCM_014807" /note="paralog of Thecc1EG001066t1" /codon_start=1 /product="RNA-binding family protein" /protein_id="EOY22721.1" /db_xref="Phytozome:POPTR_0012s11480.1" /db_xref="TAIR:AT5G51120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU62" /translation="MEQHEEPEHEVYGGEIPDEEGEMDADVDMSGGAEDYEGNEQDLE QDPNSNSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSASATQAEKEEVD SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNA LLLNESELHGRQLKVSAKRTNIPGMKQYRGRRPNPYFRSRRPFMPGPAFYPPYGYGRV PRFRRPMRYRPY" gene 24569180..24571942 /locus_tag="TCM_014808" /note="dbxref CacaoGD:Thecc1EG014808" mRNA join(24569180..24569584,24569690..24569787, 24570082..24570178,24570351..24570429,24570884..24571180, 24571312..24571772) /locus_tag="TCM_014808" /product="Mediator of RNA polymerase II transcription subunit 31 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024482001" /inference="similar to AA sequence:Phytozome:Glyma10g38750.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6276t1; inference alignment:Newbler:10:TSA:cgbaL_g02015t00002" mRNA join(24569195..24569584,24569690..24569787, 24570082..24570178,24570351..24570429,24570884..24571176, 24571312..24571373,24571503..24571942) /locus_tag="TCM_014808" /product="Mediator of RNA polymerase II transcription subunit 31 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024482001" /inference="similar to AA sequence:Phytozome:Glyma10g38750.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02015t00002; inference alignment:Newbler:10:TSA:cgbaL_g02015t00002" CDS join(24569538..24569584,24569690..24569787, 24570082..24570178,24570351..24570429,24570884..24571180, 24571312..24571329) /locus_tag="TCM_014808" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mediator of RNA polymerase II transcription subunit 31 isoform 2" /protein_id="EOY22723.1" /db_xref="Phytozome:Glyma10g38750.2" /db_xref="TAIR:AT5G19910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYB1" /translation="MASTKESDNASNSPSSPKTVYKDPDDGRQRFLLELEFVQCLANP TYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNASFRNGMA HPVNKELAHRQQFFFWKNYRNNRLKFILPKPPPEPVAAPAPLPPTAVPPQAAMPPVPA TTIAMTSASPAPSSALSPMPYGLPPGSVLAKNDMRNSGIDRRKRKYERSLT" CDS join(24569538..24569584,24569690..24569787, 24570082..24570178,24570351..24570429,24570884..24571176, 24571312..24571324) /locus_tag="TCM_014808" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mediator of RNA polymerase II transcription subunit 31 isoform 1" /protein_id="EOY22722.1" /db_xref="Phytozome:Glyma10g38750.2" /db_xref="TAIR:AT5G19910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYB1" /translation="MASTKESDNASNSPSSPKTVYKDPDDGRQRFLLELEFVQCLANP TYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNASFRNGMA HPVNKELAHRQQFFFWKNYRNNRLKFILPKPPPEPVAAPAPLPPTAVPPQAAMPPVPA TTIAMTSASPAPSSALSPMPYGLPPGSVLAKNDMRNSGIDRRKRKKEV" mRNA join(<24569758..24569806,24570082..24570178, 24570351..24570429,24570884..24571184,24571312..24571795) /locus_tag="TCM_014808" /product="Mediator of RNA polymerase II transcription subunit 31 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024482001" /inference="similar to AA sequence:Phytozome:Glyma10g38750.2" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc219t1; inference alignment:Newbler:10:TSA:cgbaL_g02015t00002" CDS join(<24569758..24569806,24570082..24570178, 24570351..24570429,24570884..24571184,24571312..24571346) /locus_tag="TCM_014808" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Mediator of RNA polymerase II transcription subunit 31 isoform 3" /protein_id="EOY22724.1" /db_xref="Phytozome:Glyma10g38750.2" /db_xref="TAIR:AT5G19910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYB1" /translation="SAWPILLTFTVFLRTWDLAQNRYFEDEAFIGYLKYLQYWQRPEY IKFIMYPHCLYFLELLQNASFRNGMAHPVNKELAHRQQFFFWKNYRNNRLKFILPKPP PEPVAAPAPLPPTAVPPQAAMPPVPATTIAMTSASPAPSSALSPMPYGLPPGSVLAKN DMRNSGIDRRKRKYVRKKFNLTNHLH" mobile_element complement(24572212..24572473) /note="source:scaffold_4_CACTA_0506 3331 3579" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24572486..24573110) /note="source:scaffold_8_CACTA_0855 1778 2489" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24573076..24573434 /note="source:scaffold_4_CACTA_0506 2691 3114" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24573425..24573465) /note="source:INTACT135F_F90_scaffold_2-int 13849 13971" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24573466..24574405 /note="source:scaffold_2_CACTA_0244 12398 13387" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24574406..24574725) /note="source:INTACT135F_F90_scaffold_2-int 12863 13848" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24574785..24574889) /note="source:scaffold_4_CACTA_0506 2685 2795" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24575870..24575998) /note="source:scaffold_5_CACTA_0580 5412 5528" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24578948..24579012 /note="source:CACAO_M_S_E6245_F266_scaffold_2 1071 1114" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24579486..24583372 /locus_tag="TCM_014809" /note="dbxref CacaoGD:Thecc1EG014809" mRNA join(24579486..24579736,24579848..24579961, 24580650..24580871,24581005..24581079,24581188..24581304, 24581404..24581654,24582346..24582421,24582490..24582576, 24582843..24583372) /locus_tag="TCM_014809" /product="Glutamate dehydrogenase 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026466t4" /inference="similar to AA sequence:Phytozome:POPTR_0015s12250.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08094t00001" CDS join(24579629..24579736,24579848..24579961, 24580650..24580871,24581005..24581079,24581188..24581304, 24581404..24581654,24582346..24582421,24582490..24582576, 24582843..24583028) /locus_tag="TCM_014809" /note="paralog of Thecc1EG026466t4" /codon_start=1 /product="Glutamate dehydrogenase 2" /protein_id="EOY22725.1" /db_xref="Phytozome:POPTR_0015s12250.1" /db_xref="TAIR:AT5G07440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38946" /translation="MNALAATNRNFRLASRLLGLDSKLEKSLLIPFREIKVECTIPKD DGTLASYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAK GGIGCSPRDLSKSELERLTRVFTQKIHDLIGIHTDVPAPDMGTNSQTMAWILDEYSKF HGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEYGKSIKGLTFVIQGFGNVG SWAAKLIHERGGKVIAVSDITGAVKNPNGIDIPELLKHKEDTGSLKGFSGGDSMDPNE LLVHECDVLIPCALGGVLNRENAADVKAKFIIEAANHPTDPEADEILSKKGVIILPDI YANAGGVTVSYFEWVQNIQGFMWDEEKVNKELRRYMTQAFHNIKNMCGTHNCNLRMGA FTLGVNRVARSTLLRGWEA" gene complement(24583332..24585370) /locus_tag="TCM_014810" /note="dbxref CacaoGD:Thecc1EG014810" mRNA complement(join(24583332..24584271,24585085..24585370)) /locus_tag="TCM_014810" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034780t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS complement(join(24583678..24584271,24585085..24585264)) /locus_tag="TCM_014810" /note="paralog of Thecc1EG034780t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22726.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJN8" /translation="MNVKSQWIPVEPDLQQSHHPNPSYHFSQTFKSHVPFFQRSSLNF GTEDSVRKYCLSIHHQTSLLVQGQEATQPHPSFSLPFQPSTISINIRKCKRKVTSKWR RPPPGSFKLNIDGSALGKPGPAGIRGAIRDHEGFIKGVFSTPIGTEDSNYAEFLAIKE GLSLFFSSPWASNTLHVDCDSKNAITWASHHNSVPWRVKLLSNSIGAFKTSFKDLSFT HINREANTLADGLAKVGTIRLNRFRLCSSTLSCFGKQGC" mobile_element 24587382..24588307 /note="source:CACAO_PIF_E144_scaffold_10 1208 2131" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(24588115..24588365) /note="source:scaffold_6_CACTA_0703 4053 4284" /mobile_element_type="transposon:TIR/CACTA" gene 24588643..24593446 /locus_tag="TCM_014811" /note="dbxref CacaoGD:Thecc1EG014811" mRNA join(24588643..24588834,24589117..24589480, 24589899..24590038,24590200..24590299,24590399..24590497, 24590975..24591322,24591872..24591964,24592054..24592260, 24592679..24593430) /locus_tag="TCM_014811" /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024473001" /inference="similar to AA sequence:Phytozome:GSVIVT01024473001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc629t10" mRNA join(24588809..24588834,24589117..24589480, 24589899..24590038,24590200..24590299,24590399..24590497, 24590975..24591322,24591872..24591964,24592054..24592260, 24592679..24592888,24593167..24593446) /locus_tag="TCM_014811" /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024473001" /inference="similar to AA sequence:Phytozome:GSVIVT01024473001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc629t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc629t10" mRNA join(24588809..24588834,24589117..24589480, 24589899..24590038,24590200..24590299,24590399..24590497, 24590975..24591322,24591872..24591964,24592054..24592211, 24592679..24593446) /locus_tag="TCM_014811" /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024473001" /inference="similar to AA sequence:Phytozome:GSVIVT01024473001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc629t5; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc629t10" CDS join(24589166..24589480,24589899..24590038, 24590200..24590299,24590399..24590497,24590975..24591322, 24591872..24591964,24592054..24592260,24592679..24592888, 24593167..24593196) /locus_tag="TCM_014811" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein isoform 2" /protein_id="EOY22728.1" /db_xref="Phytozome:GSVIVT01024473001" /db_xref="TAIR:AT5G51150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICE7" /translation="MPALPKNPNSSSRLLADSAEAERRLLEAEERLREAIEELQRRQR TAASGQHPPCDHADDSCVANAIGNLCQSFLLSYGVRVGIGILLRAFKLARRQSYSSLL DLKQLVSEKDLIVREEACRVGLLFGGFTGSYHALRCLLRKLRKKETPVNAILAGSIAG LSVLALDDSNRRRTLALYLLARVAQCAYNSAKSKNKFHLWGSHWRHGDSLLFALACAQ VMYAFVMRPESLPKSYQDFIQKTGPVAAPVYKAVRENCRGSPVDVASISAYLYRRGKS NNVKLEEFPSIIPCSVIHPDKNSCLAHNANAASATFRKTFPLYFSLTFVPFVVLHLQK FMDTPARTFWLAVKGAVRSTTFLSAFVGIFQGVICMHRKIASKDHKLVYWVAGAIAAL SVLLEKKTRRSELALYVLPRAGESLWYILVNRHLLPDIKNAEVALFCACMGGIMYYLE YEPDTMAPFLRGLIRRFLASRISNPGSSSNRTASYTYLQTLDAMNKPQLQDNREEESL LLKRL" CDS join(24589166..24589480,24589899..24590038, 24590200..24590299,24590399..24590497,24590975..24591322, 24591872..24591964,24592054..24592260,24592679..24592942) /locus_tag="TCM_014811" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein isoform 1" /protein_id="EOY22727.1" /db_xref="Phytozome:GSVIVT01024473001" /db_xref="TAIR:AT5G51150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICE7" /translation="MPALPKNPNSSSRLLADSAEAERRLLEAEERLREAIEELQRRQR TAASGQHPPCDHADDSCVANAIGNLCQSFLLSYGVRVGIGILLRAFKLARRQSYSSLL DLKQLVSEKDLIVREEACRVGLLFGGFTGSYHALRCLLRKLRKKETPVNAILAGSIAG LSVLALDDSNRRRTLALYLLARVAQCAYNSAKSKNKFHLWGSHWRHGDSLLFALACAQ VMYAFVMRPESLPKSYQDFIQKTGPVAAPVYKAVRENCRGSPVDVASISAYLYRRGKS NNVKLEEFPSIIPCSVIHPDKNSCLAHNANAASATFRKTFPLYFSLTFVPFVVLHLQK FMDTPARTFWLAVKGAVRSTTFLSAFVGIFQGVICMHRKIASKDHKLVYWVAGAIAAL SVLLEKKTRRSELALYVLPRAGESLWYILVNRHLLPDIKNAEVALFCACMGGIMYYLE YEPDTMAPFLRGLIRRFLASRISNPGSSSNRTASYTYLQTLDAMNKPQLQDNREVETS TPKQYNLESIPGL" CDS join(24589166..24589480,24589899..24590038, 24590200..24590299,24590399..24590497,24590975..24591322, 24591872..24591964,24592054..24592211,24592679..24592724) /locus_tag="TCM_014811" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein isoform 3" /protein_id="EOY22729.1" /db_xref="Phytozome:GSVIVT01024473001" /db_xref="TAIR:AT5G51150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICE7" /translation="MPALPKNPNSSSRLLADSAEAERRLLEAEERLREAIEELQRRQR TAASGQHPPCDHADDSCVANAIGNLCQSFLLSYGVRVGIGILLRAFKLARRQSYSSLL DLKQLVSEKDLIVREEACRVGLLFGGFTGSYHALRCLLRKLRKKETPVNAILAGSIAG LSVLALDDSNRRRTLALYLLARVAQCAYNSAKSKNKFHLWGSHWRHGDSLLFALACAQ VMYAFVMRPESLPKSYQDFIQKTGPVAAPVYKAVRENCRGSPVDVASISAYLYRRGKS NNVKLEEFPSIIPCSVIHPDKNSCLAHNANAASATFRKTFPLYFSLTFVPFVVLHLQK FMDTPARTFWLAVKGAVRSTTFLSAFVGIFQGVICMHRKIASKDHKLVYWVAGAIAAL SVLLEKKTRRSELALYVLPRAGESLWWPYFVHAWEESCTT" gene 24593573..24595737 /locus_tag="TCM_014812" /note="dbxref CacaoGD:Thecc1EG014812" mRNA join(24593573..24594592,24594786..24595737) /locus_tag="TCM_014812" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014813t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11530.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5910t1" CDS join(24594017..24594592,24594786..24595556) /locus_tag="TCM_014812" /note="paralog of Thecc1EG014813t1" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY22730.1" /db_xref="Phytozome:POPTR_0012s11530.1" /db_xref="TAIR:AT5G51160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NAP0" /translation="MDIRLFDAAQTGNIDSLHQLLRENALLFDQIALFSSENPLHIAY TAGHFDFVKKVINLKPDFAKEVNKDGFSLMHMAAFSGHLEIVSELMKVDPSLCRLQGT RDMKTPFHFAAMKGRVNVINEMLSGCAECIEDVTLQRETAFHLAVKCSKVEAVSVLVH WISELKKEDVLNVKDKQGNTVLHLATWRKQRKVIELLLDNERLTSGLLDVNAVNQSNL SALDMLLLFPSEAGDREIMDILSGAGALRARDVNLSPWASLDSRTLSETNHLQPQELV EYFKFKKGRDSPSEARGTLLIIATLVAAATFQVALNPPGGIWQDNYFPNQNDSHSATI SGKHLAGWSVLGTSSGVSFSLFAIFNSIGLSVSLYMIKVLTRKFPLEFELGMCMLAMF FSYNTAMINISPDDVRLVVIISTVILTSIAPLLSKRTQRLIGWIIEFTVDKIHRII" gene 24596273..24598635 /locus_tag="TCM_014813" /note="dbxref CacaoGD:Thecc1EG014813" mRNA join(24596273..24597383,24597514..24597593, 24597810..24598635) /locus_tag="TCM_014813" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s11530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014812t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11530.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5609t1" CDS join(24596807..24597383,24597514..24597593, 24597810..24598598) /locus_tag="TCM_014813" /note="paralog of Thecc1EG014812t1" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY22731.1" /db_xref="Phytozome:POPTR_0012s11530.1" /db_xref="TAIR:AT5G51160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NAP0" /translation="MDIRLFESARTGNVMDLHKLLRENPLILHTISLYSCENPLHVAS AAGHVGFVREILGLRPEYANEVNKDGFSPLHIAAANGHIEVVRELLSVDRKLCCLEGR EKKTPFHLAAMIGRIDVITEMLLSCAECIEGVTVQRETALHLATKNSQFEAVKVMVDW IIEMKKEDVLNLKDEQGNTVLHLATWKNQRQANEVSIYISKTVRRCWEERFRIVSPVK AVIELVLGTGTTVTSGSLEVNAVNQSGLTALDVLQIFPSEAGDREIADILQHAGAVRA RDVMISPTSSCESHNQVINQPRAPQRSRWQTDNLVEYFKFKKGRDPPSEARSALLVIA VLVATATFQVGLSPPGGTWQDNSSPNQTNGTSITSAYSAGTSIMGTSNGIAFALFVLF NSIGFSMSLFMINILTSKFPLQFELQICMIAMFFTYNTAMASIAPSSVKLFTIIITTV FSSITPLLTRLVKQLLKLFKNLVVDIIHKVT" gene complement(24598906..24602044) /locus_tag="TCM_014814" /note="dbxref CacaoGD:Thecc1EG014814" mRNA complement(join(24598906..24599638,24599762..24599918, 24600008..24600073,24600927..24601023,24601182..24601431, 24601532..24601624,24601723..24602044)) /locus_tag="TCM_014814" /product="UPF0406 protein C16orf57" /inference="alignment:exonerate-protein:2:frave:gene21065" /inference="similar to AA sequence:frave:gene21065" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10759t00001" CDS complement(join(24599430..24599638,24599762..24599918, 24600008..24600073,24600927..24601023,24601182..24601431, 24601532..24601624,24601723..24601888)) /locus_tag="TCM_014814" /note="dbxref frave:gene21065" /codon_start=1 /product="UPF0406 protein C16orf57" /protein_id="EOY22732.1" /db_xref="TAIR:AT5G51170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICF1" /translation="MEALRATYGEASSDSDSEASSPPTLSTKSKTQTEQTLSSPLPPP PLSLLDPPNALGSLDYLQTGQPSRVRSFPHVEGNYALHVYIPVYIPSTSKKEIGKFLK RVATFVPGLHVVDIDVPLNILCKEEDKLEQVALGREFHISLGRTVPIRVHQIDSIVTI LRQKLQFQKRYWIDFNKWEVFVNDDHTRSFLSLEVIRGGLAEITKQIEGVNEVYKLHN LPEFYKDPRPHISLAWALGDLSVPLKQVVKEETRTSSFGGSLQNCICTSKFGGIECKI DKEPAVRSLSTTVHFSLHVANMCVPCDHTTCIFPKCLPLGLITLVIVLYCFLVEKALP PISVTWPPLTF" gene 24603364..24615802 /locus_tag="TCM_014815" /note="dbxref CacaoGD:Thecc1EG014815" mRNA join(24603364..24603710,24604162..24604804, 24604927..24604968,24605238..24605401,24605870..24606074, 24606586..24606642,24606727..24606832,24606922..24607055, 24607194..24607268,24607386..24607511,24607614..24607745, 24607840..24607923,24608019..24608132,24608259..24608359, 24609155..24609221,24609562..24609612,24610096..24610173, 24610643..24610849,24610973..24611011,24611175..24611246, 24611341..24611427,24611503..24611559,24612733..24612938, 24613015..24613108,24613493..24613543,24613925..24613987, 24614179..24614238,24614388..24614450,24614849..24615526) /locus_tag="TCM_014815" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G25120.1" /inference="similar to AA sequence:ricco:30147.m014350" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc34t11" mRNA join(24603392..24603710,24604162..24604804, 24604927..24604968,24605238..24605401,24605870..24606074, 24606586..24606642,24606727..24606832,24606922..24607055, 24607194..24607268,24607386..24607511,24607614..24607745, 24607840..24607923,24608019..24608132,24608259..24608359, 24609155..24609221,24609562..24609612,24610096..24610173, 24610643..24610849,24610973..24611011,24611175..24611246, 24611341..24611427,24611503..24611559,24612733..24612938, 24613015..24613108,24613493..24613543,24613925..24613987, 24614179..24614238,24614388..24614450,24614849..24614962, 24615505..24615514,24615527..24615802) /locus_tag="TCM_014815" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G25120.1" /inference="similar to AA sequence:ricco:30147.m014350" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc35t10; alternateUTRof:Thecc1EG014815t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc34t11" mRNA join(24603392..24603710,24604162..24604804, 24604927..24604968,24605238..24605401,24605870..24606074, 24606586..24606642,24606727..24606832,24606922..24607055, 24607194..24607268,24607386..24607511,24607614..24607745, 24607840..24607923,24608019..24608132,24608259..24608359, 24609155..24609221,24609562..24609612,24610096..24610173, 24610643..24610849,24610973..24611011,24611175..24611246, 24611341..24611427,24611503..24611559,24612733..24612938, 24613015..24613108,24613493..24613543,24613925..24613987, 24614179..24614238,24614388..24614450,24614547..>24614574) /locus_tag="TCM_014815" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT4G25120.1" /inference="similar to AA sequence:ricco:30147.m014350" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc34t8; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc34t11" CDS join(24603550..24603710,24604162..24604804, 24604927..24604968,24605238..24605401,24605870..24606074, 24606586..24606642,24606727..24606832,24606922..24607055, 24607194..24607268,24607386..24607511,24607614..24607745, 24607840..24607923,24608019..24608132,24608259..24608359, 24609155..24609221,24609562..24609612,24610096..24610173, 24610643..24610849,24610973..24611011,24611175..24611246, 24611341..24611427,24611503..24611559,24612733..24612938, 24613015..24613108,24613493..24613543,24613925..24613987, 24614179..24614238,24614388..24614450,24614849..24614938) /locus_tag="TCM_014815" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014350" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY22733.1" /db_xref="TAIR:AT4G25120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JSH5" /translation="MPKENVSFTPLSPANQTPQLQNPRISQNFRATKPFLVRKRNRDD GYFTDHFPCRSKDGIDSGLPALITGVKRVPLMEIPMNTPSPFSTAGSKSIKSQNGEFS NVRPMAGSMDTDCLSDPFITPTKKPDFSNLSDSFLTPSLLDEDFDESMLEEIDAICEQ QSAAKAEREDLNVNIDMRGQQYDYSCSDHIAASILTTNENVRAESAVDTRNYFGLKED DLSTLGTVQSGGMPDEYSKYLQSLNDRQRDAACSDIKIPLMITAGPGSGKTSTMVGRV LMLLNEGVSPSNILAMTFTTAAASEMRDRIGAVAGKATAKELTISTFHSFSLQLCRSH AEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKSGQKYDACRSSTTEILNGARHPEYF KDKSKKWQKFVTQAKASGKTPEECRKMGDEIGAAVLGSYSDILRSCNALDYHDLISCS VKLLTQYPEVFKECQDSWKAIIVDEFQDTSAMQYSLLRILASHNHITIVGDDDQSIFS FNGADISGFDSFRKDFPNYKEIRLIRNYRSTRCIVEAASCLIQNNTKRCLSKNFLSEN SYGSKITIKECYNEDAQCAFVVDKILETASNGTIASCSFGKIAILYRRQVSGKVFQTT FRNRKIPFNLHGVAFYRKKVVRAIIAMLKTALPACDDGAYRKGFKALLPFEKEEKKRV IEHVEKIAACRKCSFISAASDIFSAKISGTFKRSQLTQGRKVLLTLEMISKLVQREQS ISAVITSVSNMIPQKYLLEQRAVIDVDGGKLLNEDNDVRSVLQYLLDDVSDFLSTQFT DREENRETGEEKGCVSVLNFFIDYITERERENFRSRRHDNENSVTLTTIHQSKGLEWD MVFIVKANETEIPLIHEFNGAATENGTSIEEERRLLYVAMTRARQKLFVLYVTMDSNW QMLQPSRFLKEIPDHLLESQAEASMDVLKTTHQDIPKEIAQFTTELPSEKQSSVANMV PENFLDAQNNAASEESAELVKACSGSTFLTRFSVEERSIISHLFHQWARKQAFQEPRR LLDKVRFVIDERLRVKNYKHKEVLRGLRPCLSCEEAFHYAEYVVRWEQIPADKRAHLM REKQEHFQKLRMENSMGSSAATSKQIAYLQSLGCTVIPTSRLHASRLIEQYKSL" CDS join(24603550..24603710,24604162..24604804, 24604927..24604968,24605238..24605401,24605870..24606074, 24606586..24606642,24606727..24606832,24606922..24607055, 24607194..24607268,24607386..24607511,24607614..24607745, 24607840..24607923,24608019..24608132,24608259..24608359, 24609155..24609221,24609562..24609612,24610096..24610173, 24610643..24610849,24610973..24611011,24611175..24611246, 24611341..24611427,24611503..24611559,24612733..24612938, 24613015..24613108,24613493..24613543,24613925..24613987, 24614179..24614238,24614388..24614450,24614849..24614938) /locus_tag="TCM_014815" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014350" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY22734.1" /db_xref="TAIR:AT4G25120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JSH5" /translation="MPKENVSFTPLSPANQTPQLQNPRISQNFRATKPFLVRKRNRDD GYFTDHFPCRSKDGIDSGLPALITGVKRVPLMEIPMNTPSPFSTAGSKSIKSQNGEFS NVRPMAGSMDTDCLSDPFITPTKKPDFSNLSDSFLTPSLLDEDFDESMLEEIDAICEQ QSAAKAEREDLNVNIDMRGQQYDYSCSDHIAASILTTNENVRAESAVDTRNYFGLKED DLSTLGTVQSGGMPDEYSKYLQSLNDRQRDAACSDIKIPLMITAGPGSGKTSTMVGRV LMLLNEGVSPSNILAMTFTTAAASEMRDRIGAVAGKATAKELTISTFHSFSLQLCRSH AEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKSGQKYDACRSSTTEILNGARHPEYF KDKSKKWQKFVTQAKASGKTPEECRKMGDEIGAAVLGSYSDILRSCNALDYHDLISCS VKLLTQYPEVFKECQDSWKAIIVDEFQDTSAMQYSLLRILASHNHITIVGDDDQSIFS FNGADISGFDSFRKDFPNYKEIRLIRNYRSTRCIVEAASCLIQNNTKRCLSKNFLSEN SYGSKITIKECYNEDAQCAFVVDKILETASNGTIASCSFGKIAILYRRQVSGKVFQTT FRNRKIPFNLHGVAFYRKKVVRAIIAMLKTALPACDDGAYRKGFKALLPFEKEEKKRV IEHVEKIAACRKCSFISAASDIFSAKISGTFKRSQLTQGRKVLLTLEMISKLVQREQS ISAVITSVSNMIPQKYLLEQRAVIDVDGGKLLNEDNDVRSVLQYLLDDVSDFLSTQFT DREENRETGEEKGCVSVLNFFIDYITERERENFRSRRHDNENSVTLTTIHQSKGLEWD MVFIVKANETEIPLIHEFNGAATENGTSIEEERRLLYVAMTRARQKLFVLYVTMDSNW QMLQPSRFLKEIPDHLLESQAEASMDVLKTTHQDIPKEIAQFTTELPSEKQSSVANMV PENFLDAQNNAASEESAELVKACSGSTFLTRFSVEERSIISHLFHQWARKQAFQEPRR LLDKVRFVIDERLRVKNYKHKEVLRGLRPCLSCEEAFHYAEYVVRWEQIPADKRAHLM REKQEHFQKLRMENSMGSSAATSKQIAYLQSLGCTVIPTSRLHASRLIEQYKSL" CDS join(24603550..24603710,24604162..24604804, 24604927..24604968,24605238..24605401,24605870..24606074, 24606586..24606642,24606727..24606832,24606922..24607055, 24607194..24607268,24607386..24607511,24607614..24607745, 24607840..24607923,24608019..24608132,24608259..24608359, 24609155..24609221,24609562..24609612,24610096..24610173, 24610643..24610849,24610973..24611011,24611175..24611246, 24611341..24611427,24611503..24611559,24612733..24612938, 24613015..24613108,24613493..24613543,24613925..24613987, 24614179..24614238,24614388..24614450,24614547..>24614573) /locus_tag="TCM_014815" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014350" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 3" /protein_id="EOY22735.1" /db_xref="TAIR:AT4G25120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JSH5" /translation="MPKENVSFTPLSPANQTPQLQNPRISQNFRATKPFLVRKRNRDD GYFTDHFPCRSKDGIDSGLPALITGVKRVPLMEIPMNTPSPFSTAGSKSIKSQNGEFS NVRPMAGSMDTDCLSDPFITPTKKPDFSNLSDSFLTPSLLDEDFDESMLEEIDAICEQ QSAAKAEREDLNVNIDMRGQQYDYSCSDHIAASILTTNENVRAESAVDTRNYFGLKED DLSTLGTVQSGGMPDEYSKYLQSLNDRQRDAACSDIKIPLMITAGPGSGKTSTMVGRV LMLLNEGVSPSNILAMTFTTAAASEMRDRIGAVAGKATAKELTISTFHSFSLQLCRSH AEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKSGQKYDACRSSTTEILNGARHPEYF KDKSKKWQKFVTQAKASGKTPEECRKMGDEIGAAVLGSYSDILRSCNALDYHDLISCS VKLLTQYPEVFKECQDSWKAIIVDEFQDTSAMQYSLLRILASHNHITIVGDDDQSIFS FNGADISGFDSFRKDFPNYKEIRLIRNYRSTRCIVEAASCLIQNNTKRCLSKNFLSEN SYGSKITIKECYNEDAQCAFVVDKILETASNGTIASCSFGKIAILYRRQVSGKVFQTT FRNRKIPFNLHGVAFYRKKVVRAIIAMLKTALPACDDGAYRKGFKALLPFEKEEKKRV IEHVEKIAACRKCSFISAASDIFSAKISGTFKRSQLTQGRKVLLTLEMISKLVQREQS ISAVITSVSNMIPQKYLLEQRAVIDVDGGKLLNEDNDVRSVLQYLLDDVSDFLSTQFT DREENRETGEEKGCVSVLNFFIDYITERERENFRSRRHDNENSVTLTTIHQSKGLEWD MVFIVKANETEIPLIHEFNGAATENGTSIEEERRLLYVAMTRARQKLFVLYVTMDSNW QMLQPSRFLKEIPDHLLESQAEASMDVLKTTHQDIPKEIAQFTTELPSEKQSSVANMV PENFLDAQNNAASEESAELVKACSGSTFLTRFSVEERSIISHLFHQWARKQAFQEPRR LLDKVRFVIDERLRVKNYKHKEVLRGLRPCLSCEEAFHYAEYVVRWEQIPADKRAHLM REKQEHFQKLRMENSMGSSAATSKQIFMIISSCL" gene complement(<24614937..24618130) /locus_tag="TCM_014816" /note="dbxref CacaoGD:Thecc1EG014816" mRNA complement(join(<24614937..24614960,24615776..24615857, 24616071..24616204,24616285..24616412,24616676..24616752, 24617053..24617139,24617231..24617347,24617437..24617551, 24617758..24618021)) /locus_tag="TCM_014816" /product="Orange protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013859001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022661t1" /inference="similar to AA sequence:Phytozome:Glyma12g00600.3" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc36t12; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc36t12; inference alignment:Newbler:10:TSA:cgbaP1_g03304t00001" mRNA complement(join(<24614937..24614960,24615776..24616204, 24616285..24616412,24616676..24616752,24617053..24617139, 24617231..24617347,24617437..24617551,24617758..24618021)) /locus_tag="TCM_014816" /product="Orange protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013859001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022661t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013859001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc36t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc36t12; inference alignment:Newbler:10:TSA:cgbaP1_g03304t00001" CDS complement(join(<24614938..24614960,24615776..24615857, 24616071..24616204,24616285..24616412,24616676..24616752, 24617053..24617139,24617231..24617347,24617437..24617551, 24617758..24617945)) /locus_tag="TCM_014816" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022661t1" /codon_start=1 /product="Orange protein isoform 2" /protein_id="EOY22737.1" /db_xref="Phytozome:Glyma12g00600.3" /db_xref="TAIR:AT5G61670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKF4" /translation="MVCLSRVLAVSYTVKPSRPYNRSCFSSELVHATPKLNTRWRSMA TEPESSSFAPSIDSESTAGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEV RRLRIQQRIKSAELGILKEETENELPNFPSFIPFLPPLTSDNLKVYYATCFSLIAGTI IFGGLLAPTLELKLGLGGTSYADFIRSMHLPMQLSQVDPIVASFSGGAVGVISALMVV EINNVKQQEHKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDRPLSAPKTERCS NCSGSGRSCAPHAFALEWQWQANMTQELTHLIRGFFRTDYS" CDS complement(join(<24614938..24614960,24615776..24616204, 24616285..24616412,24616676..24616752,24617053..24617139, 24617231..24617347,24617437..24617551,24617758..24617945)) /locus_tag="TCM_014816" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG022661t1" /codon_start=1 /product="Orange protein isoform 3" /protein_id="EOY22738.1" /db_xref="Phytozome:GSVIVT01013859001" /db_xref="TAIR:AT5G61670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKF4" /translation="MVCLSRVLAVSYTVKPSRPYNRSCFSSELVHATPKLNTRWRSMA TEPESSSFAPSIDSESTAGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEV RRLRIQQRIKSAELGILKEETENELPNFPSFIPFLPPLTSDNLKVYYATCFSLIAGTI IFGGLLAPTLELKLGLGGTSYADFIRSMHLPMQLSQVDPIVASFSGGAVGVISALMVV EINNVKQQEHKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDRPLSAPKTERCS NCSGSGKVYHQKICSFNGLLWTCPYQPGNLNERKNILLMQMLNSPLTVFIIYLYLPDV KFVDIIICSVLIFGFLCFGRSCAPHAFALEWQWQANMTQELTHLIRGFFRTDYS" mRNA complement(join(24615598..24615855,24616068..24616204, 24616285..24616412,24616676..24616752,24617053..24617139, 24617231..24617347,24617437..24617551,24617758..24618130)) /locus_tag="TCM_014816" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013859001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022661t1" /inference="similar to AA sequence:Phytozome:Glyma12g00600.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03304t00001; inference alignment:Newbler:10:TSA:cgbaP1_g03304t00001" CDS complement(join(24615778..24615855,24616068..24616204, 24616285..24616412,24616676..24616752,24617053..24617139, 24617231..24617347,24617437..24617551,24617758..24617945)) /locus_tag="TCM_014816" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022661t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY22736.1" /db_xref="Phytozome:Glyma12g00600.3" /db_xref="TAIR:AT5G61670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKF4" /translation="MVCLSRVLAVSYTVKPSRPYNRSCFSSELVHATPKLNTRWRSMA TEPESSSFAPSIDSESTAGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEV RRLRIQQRIKSAELGILKEETENELPNFPSFIPFLPPLTSDNLKVYYATCFSLIAGTI IFGGLLAPTLELKLGLGGTSYADFIRSMHLPMQLSQVDPIVASFSGGAVGVISALMVV EINNVKQQEHKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDRPLSAPKTERCS NCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD" mRNA complement(join(<24616180..24616219,24616285..24616412, 24616676..24616752,24617053..24617139,24617231..24617347, 24617437..24617551,24617758..24618021)) /locus_tag="TCM_014816" /product="Orange protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013859001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022661t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013859001" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc36t3; inference alignment:Newbler:10:TSA:cgbaP1_g03304t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc36t12" CDS complement(join(<24616182..24616219,24616285..24616412, 24616676..24616752,24617053..24617139,24617231..24617347, 24617437..24617551,24617758..24617945)) /locus_tag="TCM_014816" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG022661t1" /codon_start=1 /product="Orange protein isoform 5" /protein_id="EOY22739.1" /db_xref="Phytozome:GSVIVT01013859001" /db_xref="TAIR:AT5G61670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKF4" /translation="MVCLSRVLAVSYTVKPSRPYNRSCFSSELVHATPKLNTRWRSMA TEPESSSFAPSIDSESTAGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEV RRLRIQQRIKSAELGILKEETENELPNFPSFIPFLPPLTSDNLKVYYATCFSLIAGTI IFGGLLAPTLELKLGLGGTSYADFIRSMHLPMQLSQVDPIVASFSGGAVGVISALMVV EINNVKQQEHKRCKYCLGTVMVSAGYLACARC" mobile_element 24618440..24618450 /note="source:CACAO_M_E34934_F98_scaffold_5 2023 2058" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24618451..24618528 /note="source:CACAO_Again_on_E207_scaffold_9 1024 1097" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24618472..24618555) /note="source:CACAO_M_S_E98851_F233_scaffold_8 1307 1368" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24623348..24624621 /locus_tag="TCM_014817" /note="dbxref CacaoGD:Thecc1EG014817" mRNA 24623348..24624621 /locus_tag="TCM_014817" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.62 coverage" CDS 24623382..24623948 /locus_tag="TCM_014817" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22740.1" /translation="MHQILTQARFHTQSQLGLQKAYNSKYIMEKKMQLNFLHFTVYLI FLLSAFNITGARGDRKKLTASEMSTEPNAPSGDINGDSGSGHGPNWDYSWGWGSSPGG GWGYGSGSGRSPNGFGRGYGFGFGSGTGSGSGYGYGSGGDGAHGGGYGAGSGQGNSGG SGYGGGSGGSSGSGNSNTWPSSNRNHHG" gene complement(24624625..24630716) /locus_tag="TCM_014818" /note="dbxref CacaoGD:Thecc1EG014818" mRNA complement(join(24624625..24624719,24625756..24626034, 24627132..24629338,24629447..24630048,24630490..24630716)) /locus_tag="TCM_014818" /product="SU(VAR)3-9, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400036458" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014821t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013881001" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1676t2" CDS complement(join(24627617..24629338,24629447..24630040)) /locus_tag="TCM_014818" /note="paralog of Thecc1EG014821t1" /codon_start=1 /product="SU(VAR)3-9, putative" /protein_id="EOY22741.1" /db_xref="Phytozome:GSVIVT01013881001" /db_xref="TAIR:AT2G35160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BGK9" /translation="MFDVISSRRHNGYSSKFKRPGVSAVRHYPRDCGLLLPELDPRKG QEEITKVHPLEIAAASRPVLRKYPPPKIRKGHLVIRNFPFKSNAPAALRNQMPSDSED SHSSFGIPMADCEQSDASKATDVHTCRDAKQYDFSVVRNSKPWYVPNSTNVHDVHVCV EPKQNNVSMVDKDCKPMDVSFATNVFACRDVKDFSPSMGVGDEQYEVDSYRVVVKDEE EGDEVPSIPKQASLSKGVGDEQCSNVHFSDEECEKALLEVYSSQVVISEDLVVTDNKE LGISSNKVKEVLHLFQEVYLKLSQESGRKRKESLPLLAASHLLKQQKWINMGKRLGPI PGIEIGDYFDWRAELNVIGLHRQYVCGIDYMELDGRILATSIVDSGRYDNIVESNDEQ EFPDVLIYSGQGENPKVQSRKFVYDQKLKGGNLALKNSSETKTPIRVIRKVSFKGASS KIVERKFVYDGLYFVDSYREERASSGKLVFKFVLKRFPGQPKLKWAKLIWKEHVCMND ISHGKEKIPIRAMNALDDEKPPLFNYVTNVTYPESYHPSMSSGGCDCIDGCSDSEDCP CVIKNGGEIPYNYEECIMMEKPIIIECGPSCKCFTSCSNRVSQRGIRFPLEVFKTKTK GWGVRSRSFIPCGSFICEYIGEILPDKEVEQRIGKDEYLFDIGHNYGVLSHSSEVNEC FTIDAAQFGNVGRFINHSCSPNLFAQNVLFDHNDSSIPHIMLFAMEDIPPLKELTYDY NYRIGGVCDVNGDIKMKPCFCGSKECTGRMY" gene complement(24630846..24633766) /locus_tag="TCM_014819" /note="dbxref CacaoGD:Thecc1EG014819" mRNA complement(join(24630846..24631707,24633022..24633047, 24633245..24633766)) /locus_tag="TCM_014819" /product="N-acetyl-l-glutamate kinase, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036203t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s04120.1" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage" CDS complement(join(24631245..24631707,24633022..24633044)) /locus_tag="TCM_014819" /note="paralog of Thecc1EG036203t1" /codon_start=1 /product="N-acetyl-l-glutamate kinase, putative" /protein_id="EOY22742.1" /db_xref="Phytozome:POPTR_0018s04120.1" /db_xref="TAIR:AT3G57560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCL7" /translation="MRELVVVKYSRARPSRSNTAPPPSASSPSSSTAAVLLNQLNIPP QFREGLRVTDAGTMEVSIVLVCKVNKDLVSRINFAGATAVGLSGNDGRLLTALPSPNA AQLGFVGEVARVDPTVLQPLGDIGHILVIASVAADEFGQPSNIADTVAGDVARRWGRR S" mobile_element 24632023..24632362 /note="source:scaffold_1_CACTA_0008 14039 14397" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24632225..24632252) /note="source:scaffold_7_CACTA_0795 2918 3024" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24632253..24632401 /note="source:CACAO_on_SS_E42_scaffold_2 17453 17605" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(24632402..24632418) /note="source:scaffold_7_CACTA_0795 2843 2917" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24633112..24634011 /note="source:INTACT349_F203_scaffold_6-int 6 898" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24634166..24636690) /locus_tag="TCM_014820" /note="dbxref CacaoGD:Thecc1EG014820" mRNA complement(join(24634166..24634888,24635914..24636690)) /locus_tag="TCM_014820" /product="Cyclin p4,1" /inference="alignment:exonerate- protein:2:ricco:30147.m014344" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005750t1" /inference="similar to AA sequence:ricco:30147.m014344" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14822t00001" CDS complement(join(24634615..24634888,24635914..24636263)) /locus_tag="TCM_014820" /note="dbxref ricco:30147.m014344; paralog of Thecc1EG005750t1" /codon_start=1 /product="Cyclin p4,1" /protein_id="EOY22743.1" /db_xref="TAIR:AT2G44740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MV61" /translation="MAEAETTNNVERETVPKVITFLSSLLQRVAESNDHIRRLQSQNI SVFHGLTRPTISIRSYLERIFKYANCSPSCFVVAYVYLDRFVQMQPSLPINSFNVHRL LITSVLVSAKFMDDIYYNNAYYAKVGGISTVELNLLELDFLFGLGFQLNVTPSDFHTY CSFLQREMWMQSPLQHLAEPSLNIGRPLKIHCCFNEDESTHQQQLAV" mobile_element complement(24638944..24639239) /note="source:CACAO_on_E227_scaffold_8 533 819" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 24639242..24640329 /note="source:CACAO_on_E683_scaffold_9 1205 2300" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(24640329..24640386) /note="source:CACAO_MITE88_scaffold_5 495 552" /mobile_element_type="transposon:TIR/MITE" mobile_element 24640403..24640529 /note="source:CACAO_on_E499_scaffold_3 302 433" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(24641066..24641169) /note="source:CACAO_on_E529_scaffold_4 5 76" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(24641154..24644536) /locus_tag="TCM_014821" /note="dbxref CacaoGD:Thecc1EG014821" mRNA complement(join(24641154..24641561,24641706..24641960, 24642067..24643364,24643436..24643523,24644374..24644536)) /locus_tag="TCM_014821" /product="SU(VAR)3-9" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014818t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" CDS complement(join(24641497..24641561,24641706..24641960, 24642067..24643364,24643436..24643515)) /locus_tag="TCM_014821" /note="paralog of Thecc1EG014818t1" /codon_start=1 /product="SU(VAR)3-9" /protein_id="EOY22744.1" /db_xref="TAIR:AT2G35160.1" /translation="MVGVILSRRHCGFPSKFKRPGVSPVRKASCHTEFPVKPNALAAL RNQTPSDSDPPKLQKGRLVLRNFPVKPNAPAVLRNQMPFDSEDRHSAYGIPMADCEQL DASNATNVHACRDTKQYDFSLVRNSKPLYVPNSTNVRDIHACIEPKQGHVSMVDKDCK PMDVSIATNVFACSDVKESSPSMVVADEQYGVDNYQGVLKDDEGDEVPSSAKQASLSK VVWNEQCLNVDFSDEECEEDLMEAYNSQVIVSEDLAVTDNKELRIASEKVKEVIHLFR EIYLKLSQESDGKQKQILPLLAASHLLKQQKWINMHKRLGPIPGVKVGDYFSWRAELN IIGLHRQHMCGIDYMELDGRILATSIVDSGRYDNVVESNDEQEFPNVLIYSGQGENLK FRSRKLVNDQKLEGGNLALKNSAETKTPIRVIRKFCFKGASSKIVDCKYVYDGLYFVD GYREEKASSGAEGIPIRAMNALDDEKPPLFNYVTNVTYPISYHPSMSSGGCDWSDGCF DSEDCPCVVKNDREIPCNYEDCIMMEKPFIIDCGLSCEILPDKEVEQRIGKDEYLLI" mobile_element 24646366..24646905 /note="source:CACAO_on_E34_scaffold_5 2 526" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24647898..24648655) /note="source:CACAO_on_E373_scaffold_1 2 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 24649376..24651267 /locus_tag="TCM_014822" /note="dbxref CacaoGD:Thecc1EG014822" mRNA join(24649376..24649577,24650599..24650647, 24650756..24650987,24651091..24651267) /locus_tag="TCM_014822" /product="Nucleoside diphosphate kinase family protein" /inference="alignment:exonerate-protein:2:frave:gene04869" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005727t1" /inference="similar to AA sequence:frave:gene04869" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8959t1" CDS join(24649527..24649577,24650599..24650647, 24650756..24650987,24651091..24651205) /locus_tag="TCM_014822" /note="dbxref frave:gene04869; paralog of Thecc1EG005727t1" /codon_start=1 /product="Nucleoside diphosphate kinase family protein" /protein_id="EOY22745.1" /db_xref="TAIR:AT4G09320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JJZ8" /translation="MEQTFIMIKPDGVQRGLVGEIISRFEKKGFYLKGMKLVNVDRTF AERHYADLSAKPFFDGLVEYIISGPVVAMIWEGKNVVLTGRKIIGATNPSESAPGTIR GDFAVEIGRNIIHGSDSVESARKEIALWFPDGAENWGSSIQSWIYE" gene complement(24652429..24654632) /locus_tag="TCM_047009" /note="dbxref CacaoGD:Thecc1EG047009" mRNA complement(join(24652429..24652957,24654111..24654632)) /locus_tag="TCM_047009" /product="Peptide methionine sulfoxide reductase reductase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013877001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014526t1" /inference="similar to AA sequence:ricco:30147.m014342" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05240t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc482t4_C1" CDS complement(join(24652706..24652957,24654111..24654623)) /locus_tag="TCM_047009" /note="dbxref ricco:30147.m014342; paralog of Thecc1EG014526t1" /codon_start=1 /product="Peptide methionine sulfoxide reductase reductase" /protein_id="EOY22746.1" /db_xref="TAIR:AT4G25130.1" /translation="MLRSLTLATSSSSSLLISKPFLSLSPKLPLSFSPLSIPFPQTKR SVSLHRAPMNILKNLGFGAKPAPSMENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVEL AFQRVPGVTKTEVGYSQGFMHNPSYEDVCSGTTNHNEVVRVQYDPKECSYDALLDAFW ARHDPTTLNRQGNDVGTQYRSGIYYYNPEQEKAARESMEKQMKLLNRNIVTEILPATK FYRAEEYHQQYLAKGGRFGFKQSAEKGCNDPIRCYG" gene complement(24655084..24659316) /locus_tag="TCM_047010" /note="dbxref CacaoGD:Thecc1EG047010" mRNA complement(join(24655084..24655660,24656063..24656117, 24656348..24659316)) /locus_tag="TCM_047010" /product="Disease resistance protein family, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024097001.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014828t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14990.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1898t7" mRNA complement(join(24655247..24655675,24656348..24659059)) /locus_tag="TCM_047010" /product="Disease resistance protein family, putative isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014828t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14990.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1898t7" CDS complement(join(24655623..24655660,24656063..24656117, 24656348..24658987)) /locus_tag="TCM_047010" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014828t1" /codon_start=1 /product="Disease resistance protein family, putative isoform 1" /protein_id="EOY22747.1" /db_xref="Phytozome:POPTR_0003s14990.1" /db_xref="TAIR:AT5G43470.2" /translation="MAEAAVSFVVERLAGILEEIDFQTGVRQEVERLQEELLRMRCFL KDADAKQDDDERVSNWVSEIRNVAYDAEDLIDTFVLRIDSLKKKSSIKRYASIFKEWK HRSKVAKELLSIQRRILNISASRETYGIRNIGEGISTARERLRKLRRSSPRGEEKDIV GLDDDIAKLVTQLVRTEDQWHAISIAGMGGIGKTTLAKKVYNHGDIQARFPSRAWVYV SQDFSTKDILQAIIKQVASTRRKLEKLEEEELEAILYEHLRKKRYLVVLDDVWSIGAW ISLAKAFPDRSNGSRVMITTRNKGIALKADAQSVPYHLHFLSEEDGWMLFCKKAFIHG VDSYRSPQLEEIGKEIVAKCAGLPLAIIVVGGLLSSKRNLGEWKRVLSNMNSLFARDP DGVSSILALSYNDLPYYLKSCFLYLGQFPEDRLIPTHKMFRLWIAEGLIPLQEERMEH VAEDYLNELIERNMVQAAKWSVNQRVKQCRLHDLLRDLSISKAKAESFHEIQGSQSLH PSARSRRHAIYSTFHWPQCKYINPHLRSLLFFRVDRNQSQVNYYINDPYKMEGSDLDY VSRNFKLLRVLELEGIPCTTIPSIIGALIHLKYLGLKETNLQALSPAIGSLRNLQTLD VAANLHLETIPNVIWKITKLRYLYMCGHKYGGPLRIDTLQHLQALSEINVQKWMQNNP ANLTSLQKLGIRGNFSLRATEIFNSIVALVQLQSLYLRTEDAEFPSLTQLSALQNLVK LHMRGTIRQLPSSQEFPPNLSQLTLEHAHLKQDSVGILENLPRLLILRLKARSYDGVK MAISVSGFPQLEFLEFHSLESLEELNLEEGAALRLRSFRIINCGNLKMLPEGMRSLAA LCELDIEEMPKSFVNRIRGEDFYKLIKQSDRSSSSDVERFNTGELRKVQSVMNA" CDS complement(join(24655631..24655675,24656348..24658987)) /locus_tag="TCM_047010" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014828t1" /codon_start=1 /product="Disease resistance protein family, putative isoform 2" /protein_id="EOY22748.1" /db_xref="Phytozome:POPTR_0003s14990.1" /db_xref="TAIR:AT5G43470.2" /translation="MAEAAVSFVVERLAGILEEIDFQTGVRQEVERLQEELLRMRCFL KDADAKQDDDERVSNWVSEIRNVAYDAEDLIDTFVLRIDSLKKKSSIKRYASIFKEWK HRSKVAKELLSIQRRILNISASRETYGIRNIGEGISTARERLRKLRRSSPRGEEKDIV GLDDDIAKLVTQLVRTEDQWHAISIAGMGGIGKTTLAKKVYNHGDIQARFPSRAWVYV SQDFSTKDILQAIIKQVASTRRKLEKLEEEELEAILYEHLRKKRYLVVLDDVWSIGAW ISLAKAFPDRSNGSRVMITTRNKGIALKADAQSVPYHLHFLSEEDGWMLFCKKAFIHG VDSYRSPQLEEIGKEIVAKCAGLPLAIIVVGGLLSSKRNLGEWKRVLSNMNSLFARDP DGVSSILALSYNDLPYYLKSCFLYLGQFPEDRLIPTHKMFRLWIAEGLIPLQEERMEH VAEDYLNELIERNMVQAAKWSVNQRVKQCRLHDLLRDLSISKAKAESFHEIQGSQSLH PSARSRRHAIYSTFHWPQCKYINPHLRSLLFFRVDRNQSQVNYYINDPYKMEGSDLDY VSRNFKLLRVLELEGIPCTTIPSIIGALIHLKYLGLKETNLQALSPAIGSLRNLQTLD VAANLHLETIPNVIWKITKLRYLYMCGHKYGGPLRIDTLQHLQALSEINVQKWMQNNP ANLTSLQKLGIRGNFSLRATEIFNSIVALVQLQSLYLRTEDAEFPSLTQLSALQNLVK LHMRGTIRQLPSSQEFPPNLSQLTLEHAHLKQDSVGILENLPRLLILRLKARSYDGVK MAISVSGFPQLEFLEFHSLESLEELNLEEGAALRLRSFRIINCGNLKMLPEGMRSLAA LCELDIEEMPKSFVNRIRGEDFYKQILQQGSYERSKVS" mobile_element complement(24659787..24659901) /note="source:scaffold_4_CACTA_0505 16532 16644" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24660472..24660646 /note="source:CACAO_on_SS_E42_scaffold_2 19795 19964" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(24660612..24660824) /note="source:INTACT897F_F376_scaffold_6-int 1189 1397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24662731..24662913 /note="source:CACAO_on_SS_E42_scaffold_2 21918 22101" /mobile_element_type="transposon:TIR/Mutator" mobile_element 24663065..24663243 /note="source:CACAO_PIF_E119_scaffold_3 4486 4677" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 24663288..24663344 /note="source:CACAO_M_E34420_F305_scaffold_5 1478 1541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24663320..24664380 /note="source:scaffold_1_CACTA_0016 1407 2490" /mobile_element_type="transposon:TIR/CACTA" gene 24664396..24669060 /locus_tag="TCM_014825" /note="dbxref CacaoGD:Thecc1EG014825" mRNA join(24664396..24664560,24664813..24666558, 24666670..24667602,24667750..24669060) /locus_tag="TCM_014825" /product="Leucine-rich repeat protein kinase family protein" /inference="similar to AA sequence:Phytozome:POPTR_0003s14970.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS join(24664494..24664560,24664813..24666558, 24666670..24667602,24667750..24668081) /locus_tag="TCM_014825" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY22749.1" /db_xref="Phytozome:POPTR_0003s14970.1" /db_xref="TAIR:AT3G47090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GYD9" /translation="MEISSLCLNRKYQEYATWNIGFGRIPSSIGNCTSLTLLDLADNS FDGLIPNTIVNLKNLQKLNLAHNALTIESSTLESSFINSLTNNMHLRRIVLSGNPLDT MLPMSIGNLSTSLEYLWLTDCKLHGRIPSEVGNLSSLVALRLGNNELTGVIPNTIGRL QKLQGLHLQGNKLQGTILYDFCKLSSLFELFLSGNELSGLIPECLSNLTTLRNLSLSS NRLTSTIPSSLWSLRDILAINMSSNSLQGSLPFDIENLKVVIEIDLSKNQFSGYIPDS WNLQSLEYLSLAVNRLQGLIPESLVSSLSLEFLDLSHNKLSGVIPKSLVQLHLMYFNV SFNELEGEIPSGGTFDNFTARSYVMNKALCGAARLQVPTCRTGTSKRSRRPILTLAKI LLPIIASMCILPQMYRAIKHCLKKRKDPLLTTNRTILYEEIVLATDGFSESNIIGTGS FGSVYKGAMKEEKNVAIKVFNLHPERGLRSFQVESELLSNTRHPNLVKLMNSCCDDDF RALVLEYMPNGTLDKWLYTHNYFLNLLQRLDIMIEVASAMSYLHSIHVIHCDLKPSNI LLDEDMIARVSDFSVAKRLGENATMQTRTMATMGYMAPEYGSSGIISEKTDVYSFGIL LMATFTGKKPTDDMFDGEMNLRLWIYESLPHAVDRFIDVSLLQSDQEDIAAKTKCVRS IMKVAWFCTAESSLERKTMAEVQFELHRIKSRFLIDTELIECEEMPREIVYPRISYQE LKLATDGFSERNLLDLGEFCVVYKGILKDKRIAAIKIFNTQRRGFESFEVQSQVLPFI RHRNVVKILKCCSDVDFKALVLEYIPNLSLQKWLYRIYPGSNILNFLKRLDIMINVAS ALCYLHTMRVIHCNLNPSNVLLDNDMVARVSGFSVAKCLEKGIGATNTTTMATAGYMA PEYESMGIVSEKTDVYSFGILLTETFTTTRPTEEMNRRSWICHSLQVVDTVVDLNFVH DGEEHLAAARRRCLRLILQLAYCCTAELSDERKTMREIESELVRIKKWFLSDN" gene complement(24668307..24671791) /locus_tag="TCM_014826" /note="dbxref CacaoGD:Thecc1EG014826" mRNA complement(join(24668307..24668506,24668856..24669088, 24671497..24671791)) /locus_tag="TCM_014826" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(24668470..24668506,24668856..24669052)) /locus_tag="TCM_014826" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22750.1" /translation="MFPMACNPRFYTNMGIFVTVSWSLRGCKSHIMVELQSPTSKRNS QRGVKIDIMILEKGVMNLTLTISRGPGGCDVAR" mobile_element complement(24669227..24670911) /note="source:CACAO_M_S_E17777_F2_scaffold_3 10239 11913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24673109..24674629) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18938 20445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24673111..24675020) /note="source:scaffold_4_CACTA_0494 2232 4037" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24674446..24675309 /note="source:scaffold_5_CACTA_0596 2218 3029" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24675285..24675959) /note="source:scaffold_4_CACTA_0494 1548 2222" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24676011..24677408) /note="source:CACAO_M_E11890_F17_scaffold_2 120 1533" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24678612..24683661) /locus_tag="TCM_014828" /note="dbxref CacaoGD:Thecc1EG014828" mRNA complement(join(24678612..24681970,24682085..24682613, 24683111..24683661)) /locus_tag="TCM_014828" /product="Nbs-lrr resistance protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024097001.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047010t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14960.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1583t2" CDS complement(join(24679261..24681970,24682085..24682092)) /locus_tag="TCM_014828" /note="paralog of Thecc1EG047010t1" /codon_start=1 /product="Nbs-lrr resistance protein" /protein_id="EOY22751.1" /db_xref="Phytozome:POPTR_0003s14960.1" /db_xref="TAIR:AT5G43470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NHG2" /translation="MTTHTFTPRRVKAFSMAEAAVSFVVERLADILEEIDFQTNVRNE VERLKDELMRMRCFLRDADAKQDDDARVSNWVSDIRYVAYDAEDLIDTFILRIDSLKK KNSIKRFASLFKDWKHRSKIAKELVAIQGRILDISQSRETYGIKNIGEGISTAREKLR KQRRSSPRGEEKDIVGLDDDIAKLVTQLVQTEDHWHAISIVGMGGIGKTTLAKKVYKH GDIQARFPTRAWVYVSQEFSTRDILQAIIKQVATTGRNLEKLREEELEEILYEHLRKK RYLVVLDDVWSIEAWNSLSEAFPDGSNGSRVVLTTRNRSIALKADARSVPYDLHFLSE ENGWLLFCKKAFIHSADSHRSPQLEEIGKEIVEKCAGLPLAIIVMGGLLSRKRNLGEW KRVLSNMSSFFAEDPNGVSAILALSYNDLPYYLKSCFLHLGQFPEDHPIPTHKLFRLW IAESLIPQQGERMEDIAEDYLNELIERNMVQVAKLSMNERVKQCRLHDLLRDLSISKA KAEGFHEIQGSQNIHPSARSRRHSMYSTFNWRQYKHPNPHLRSLLFFRVDHHQSQVNC YRDDPYKMKGSDLDYICKNFKLLRVLELEGLPCTTIPSIIGSLIHLKYLGLKETNLQE LSSAIGSLQNLQTLDVAANLHLQTIPNVIWKIAKLRYLYMCGHKYGGPLRIDTLKHLQ ALSEINVQKWMQNNHANLISLRKLGIRGNFSLKATEIFNSIVALVQLQSLYLRTEDAE FPSLTQLSALQNLVKLHMRGTIRQLPSSQEFPPNLSQLTLEHTHLKQDSVGILENLPR LLILRLKARSYDGAKMAIAVSGFPQLEFLEFHSLESLEELNLEEGAALRLRSFRIINC GNLKMLPEGMRSLTALRELDIEEMPKSFVDRIRGEDFYKVQHVSSILFV" gene 24683848..24686745 /locus_tag="TCM_014829" /note="dbxref CacaoGD:Thecc1EG014829" mRNA join(24683848..24684613,24685513..24685584, 24685672..24685743,24686376..24686499,24686579..24686745) /locus_tag="TCM_014829" /product="Leucine-rich repeat transmembrane protein kinase" /inference="alignment:exonerate- protein:2:frave:gene29689.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031979t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400001924" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5949t1" CDS join(24684028..24684613,24685513..24685584, 24685672..24685743,24686376..24686499,24686579..24686642) /locus_tag="TCM_014829" /note="paralog of Thecc1EG031979t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase" /protein_id="EOY22752.1" /db_xref="Phytozome:PGSC0003DMP400001924" /db_xref="TAIR:AT4G20140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1J3" /translation="MGLSGTIPPYIGNLSSLALLSIKNNSFYGSLPDEVAHLRSLKTV DFGINFLTGEIPPWFWSLPELENLVLKGNHFLGTVPSSLSNTTTLKNIDLSYNQLSGS ISSNLFNVSSLQIIDLSFNRLSGRLSVDMVLPELQELYLSGNQLYGQISRSLFKCRQL EVLFLCSNNFTGAIPMELGNLTMLKELHLSHNNLEGTIPWEIGHLTIVKNLSISNNHL AGHIPSSIGNCTSLKEINFSVNNLTGALPPEIGNLSGLEVLRVNDNVLRGFIPSSVFN ISTLQVVLLEMNFREQFLVPSQMHRSSLS" gene 24687068..24687782 /locus_tag="TCM_014830" /note="dbxref CacaoGD:Thecc1EG014830" mRNA join(24687068..24687495,24687554..24687782) /locus_tag="TCM_014830" /product="Leucine-rich receptor-like protein kinase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014825t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07140.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5951t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5953t1" CDS join(24687089..24687495,24687554..24687611) /locus_tag="TCM_014830" /note="paralog of Thecc1EG014825t1" /codon_start=1 /product="Leucine-rich receptor-like protein kinase family protein, putative" /protein_id="EOY22753.1" /db_xref="Phytozome:POPTR_0011s07140.1" /db_xref="TAIR:AT4G36180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1J3" /translation="MELFLGGNELSGLVPECLGNLTALRNISLGSNRLTSMIPSSLWS LKDILAINMSSNCLQGSLPLEIKNLKVVTEIDLAKNQLSGYIPNSIGELKNLVYLSLA ENNLQGSIPESFGGSISLEFLDLSRNNLSGVIPKEKFPVEDPLLISQPNHTR" gene 24688118..24688850 /locus_tag="TCM_014831" /note="dbxref CacaoGD:Thecc1EG014831" mRNA join(24688118..24688349,24688467..24688621, 24688731..24688850) /locus_tag="TCM_014831" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:frave:gene29689.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014825t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s14420.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5955t1" CDS join(24688157..24688349,24688467..24688621, 24688731..24688757) /locus_tag="TCM_014831" /note="paralog of Thecc1EG014825t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY22754.1" /db_xref="Phytozome:POPTR_0011s14420.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0G7" /translation="MIEVASALSYLHGKHVVHCDLKPSNVLLDEGMVAHVSDFSIAKL LGRVNVVQTETMATVGYMAPEYGSSGIISEKTDVYSFGILLMETFTRKKPTDEMFDGE MNLRRWIYESLPDASCLLRGRL" gene 24689241..24689898 /locus_tag="TCM_014832" /note="dbxref CacaoGD:Thecc1EG014832" mRNA join(24689241..24689381,24689480..24689898) /locus_tag="TCM_014832" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014825t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s14420.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5961t1" CDS join(24689279..24689381,24689480..24689826) /locus_tag="TCM_014832" /note="paralog of Thecc1EG014825t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22755.1" /db_xref="Phytozome:POPTR_0011s14420.1" /translation="MVAHVSDFSIAKRLGERIAATKTRTMATVGYMAPEYESTGTVSE KTDVYSFGILLMETFTRKKPTDEMFNGEMNLRGWICSSLPHALDRIVDATLLRSDNEH SASDKTRCILSIMEVASCCTAESSDERMTMTNVETKLIRIKKQFLRS" gene complement(24689917..24694101) /locus_tag="TCM_014833" /note="dbxref CacaoGD:Thecc1EG014833" mRNA complement(join(24689917..24690589,24690714..24690992, 24693765..24693953,24694044..24694101)) /locus_tag="TCM_014833" /product="Cupredoxin superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s15000.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11680.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1017t1" CDS complement(join(24690198..24690589,24690714..24690992, 24693765..24693953,24694044..24694065)) /locus_tag="TCM_014833" /codon_start=1 /product="Cupredoxin superfamily protein, putative" /protein_id="EOY22756.1" /db_xref="Phytozome:POPTR_0001s11680.1" /db_xref="TAIR:AT5G07475.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK42" /translation="MQTMTSELDREQVVAGGTFLMFTNLGIPYLCICSQRLSRLMKLE NTSALYCTNDASLHIQTFGGFRLNIALQQTNVICISEVRSSNYKQTSGIYIYIYFIPS NISVNLSFMAKLILLYFLAIFCFALTSDAATYVIGDTSGWDISTDLDSWASDKSFKVG DVLSFQYSSYHSVCEVRKGSFERCNTTDTLKTFSNGNTTVTLSKAGARYFVCGNQLHC LGGMKLQVNVEDDQASTTAGAPEAQPGATFRQPSSKSNNPSTVIPTSSGFVVGGIGSL VIALLHLMATMLILAQI" mobile_element complement(24692283..24693246) /note="source:CACAO_M_E49279_F74_scaffold_6 1008 1948" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24693502..24698553) /locus_tag="TCM_014834" /note="dbxref CacaoGD:Thecc1EG014834" mRNA complement(join(24693502..24694657,24694799..24695446, 24695651..24696068,24696156..24697036,24697373..24697448, 24697582..24698194,24698360..24698553)) /locus_tag="TCM_014834" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023905t1" /inference="similar to AA sequence:Phytozome:Glyma07g34840.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" mobile_element 24694228..24698967 /note="source:INTACT664_F23_scaffold_3-int 1 4740" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(24694477..24694657,24694799..24695446, 24695651..24696068,24696156..24697036,24697373..24697448, 24697582..24698194,24698360..24698533)) /locus_tag="TCM_014834" /note="paralog of Thecc1EG023905t1; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22757.1" /db_xref="Phytozome:Glyma07g34840.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5APY5" /translation="MSTSTSTITQQSPLFFYGSNYAVWAIKMKAFLRGVNLWNAIEFE TELPVLKENASQAQVRLQNLRRKYELLRMKENQPVGEFVEDLMKLVNQSKLMGDSLID LKVVEKIMLSLPERFEPTITYLEQVKDIIELSISDLVSALEADEQRKAARRDERVDHA LAARAKDKAPVDPSFKKNSNENREKDKAGTAAGRSQNKKGKFPVCPYCKKRNHSEAYC WFRPGVKCNACKQLGHVEKVCKNKVEAADKKPQVTKQVEKAEAAVKIENGLILDAVGK GIVAIQTTSSTSSCQYGKLTRRSFPKASLNRAKHRLELVHSDVARPMSEPSLNGSKYF VIFIDDMSIMTWIYFIQHKSEVFSIFQKFKAKVENESGCRIKKLRTDNGGEYTSSEFT SYLENEGIHHQLTAPYCPEQNGVSERKNRTIIEMSRCLLFENKLPKSFWAKAANTAVY LRNILITQAVNNETPYEAWYNTRPSVDHLRIFGSICYLHVPEELRDKLQPKAKLGVFI GYSQQSKAYRIYQIESGKVFGSRHVTFNEGAYWNWENNQVQHTKFLDEDVNLQPASSD EILDVEQIVDEPPVREWKEAMKKEMKMINLNKTWSLVDRPKHHHVLGVKWVFRMKLNS DGSLNKHKAWLVVKGFAQLLRVDYHKTFAPVARMDTIRLLLALSAKFKWKIFHLDIKS AFLNGDLQEEIFIEQPYGFESEPNRDKVYKLHKALYGLKFRMTNLGQMSYFLGLQILQ GNSGIFICQSNYIGEVLDKFKMTDCKTVATPLIPHEKLSVDKGSALENPSAFRSLIGS LLYICASRPDLMFAASYLSRFMQVPTTEHFSAAKRVLRYLKGTANIGLQFTYADESSV EFVGFSDSDWAGCVDDCKSTSGYVFTLGNGVFCWNSKKQETTAQSSAEAKYIAAATVA NQAIWVKKILTDLGFLHVPPTKLDQLADIRTKPLHLSRFEELRSKLNIQQARRSVEIK TSLNVILSNYVQDKCPLCFVVLVW" gene 24698788..24700582 /locus_tag="TCM_014835" /note="dbxref CacaoGD:Thecc1EG014835" mRNA join(24698788..24699127,24699612..24699882, 24699956..24700582) /locus_tag="TCM_014835" /product="KAR-UP oxidoreductase 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11690.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage" CDS join(24698938..24699127,24699612..24699882, 24699956..24700148) /locus_tag="TCM_014835" /codon_start=1 /product="KAR-UP oxidoreductase 1, putative" /protein_id="EOY22758.1" /db_xref="TAIR:AT5G07480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LY13" /translation="MTFKLVFISTRMSADENSSSFTIGNFAQEKGLPYVPKCYVVSPS NRSSLDLVPEKAQVPTIDIEVRKLALEIMGTIRESLGIVPNQLGKKMEDGVQVMAVNC YPPCPEPEMALGLPPHSDYTFLTIVLQNSSGLEILDTEDGKWKIVPVLHPCRTRISTA SLHSLGMDDKMGTAKELVDEKRPKGYKESSFRDFLDFIATTDIGDGKSFIGTLKLEN" gene 24702228..24703422 /locus_tag="TCM_014836" /note="dbxref CacaoGD:Thecc1EG014836" mRNA join(24702228..24702560,24703048..24703422) /locus_tag="TCM_014836" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11700.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11700.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g5969t1" CDS join(24702293..24702560,24703048..24703244) /locus_tag="TCM_014836" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22759.1" /db_xref="Phytozome:POPTR_0001s11700.1" /db_xref="TAIR:AT5G61630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PDZ2" /translation="MLFGTKQKKMYRSASWSRVSDDYYSSPKAGTGLRMSSSVEGNNE VPMYDPIIEMAKKEKSRARFAENAVHIIPLVLLVCALILWFFSNADVEVVTKADSVAA RIEGLTIDGDIDHDSDGTQAGFLPVGDSVDADTSKQPKDKKASRKLQNYNLK" gene 24704905..24708053 /locus_tag="TCM_014837" /note="dbxref CacaoGD:Thecc1EG014837" mRNA join(24704905..24705087,24705960..24706032, 24706315..24706362,24706446..24706493,24706935..24707006, 24707132..24707287,24707372..24707475,24707729..24708053) /locus_tag="TCM_014837" /product="RAB GTPaseC isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014338" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015886t1" /inference="similar to AA sequence:ricco:30147.m014338" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02257t00001; inference alignment:Newbler:10:TSA:cgbaP2_g02257t00001" mRNA join(24705006..24705087,24705957..24706032, 24706315..24706362,24706446..24706493,24706935..24707006, 24707132..24707287,24707372..24707475,24707729..24708037) /locus_tag="TCM_014837" /product="RAB GTPaseC isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014338" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015886t1" /inference="similar to AA sequence:ricco:30147.m014338" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc483t6; inference alignment:Newbler:10:TSA:cgbaP2_g02257t00001" CDS join(24705074..24705087,24705957..24706032, 24706315..24706362,24706446..24706493,24706935..24707006, 24707132..24707287,24707372..24707475,24707729..24707825) /locus_tag="TCM_014837" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014338; paralog of Thecc1EG015886t1" /codon_start=1 /product="RAB GTPaseC isoform 2" /protein_id="EOY22761.1" /db_xref="TAIR:AT4G17530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PBJ4" /translation="MTPEYSDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGV DFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ WLNEIDRYASENVNKLLVGNKCDLTASKVVSYETAKAFADELGIPFMETSAKTATNVE QAFMAMAADIKNRMASQPASNNARPQMVQIRGQPVNQKSGCCSS" CDS join(24705074..24705087,24705960..24706032, 24706315..24706362,24706446..24706493,24706935..24707006, 24707132..24707287,24707372..24707475,24707729..24707825) /locus_tag="TCM_014837" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014338; paralog of Thecc1EG015886t1" /codon_start=1 /product="RAB GTPaseC isoform 1" /protein_id="EOY22760.1" /db_xref="TAIR:AT4G17530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PBJ4" /translation="MTPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVD FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQW LNEIDRYASENVNKLLVGNKCDLTASKVVSYETAKAFADELGIPFMETSAKTATNVEQ AFMAMAADIKNRMASQPASNNARPQMVQIRGQPVNQKSGCCSS" gene complement(24708766..24710519) /locus_tag="TCM_014838" /note="dbxref CacaoGD:Thecc1EG014838" mRNA complement(join(24708766..24709240,24709319..24709495, 24709587..24709804,24710144..24710519)) /locus_tag="TCM_014838" /product="Myb-like transcription factor family protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21159" /inference="similar to AA sequence:frave:gene21159" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2234t1" mRNA complement(join(24708868..24709243,24709319..24709495, 24709587..24709804,24710144..24710452)) /locus_tag="TCM_014838" /product="Myb-like transcription factor family protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene21159" /inference="similar to AA sequence:frave:gene21159" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2234t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2234t1" CDS complement(join(24708938..24709240,24709319..24709495, 24709587..24709804,24710144..24710483)) /locus_tag="TCM_014838" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene21159" /codon_start=1 /product="Myb-like transcription factor family protein, putative isoform 1" /protein_id="EOY22762.1" /db_xref="TAIR:AT5G61620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK38" /translation="MCVCYKPNKVPAPKRGIEGVERMVKETGRKCSHCGHNGHNSRTC HGKGCVKLFGVNISAVEKQESFMKKSFSMESLRSHHAEYNNNAPSVDDGYLSDGQIHS RKSNAARERKRGKPWTEEEHRIFLAGLRKLGKGDWRGISKKFVTTRTPTQVASHAQKY FLRQAGNDKKKRRPSLFDMAFQELESNASPPGSPAEQTTRDSSDQVKAPSPIANRFPH LCLDDRPVTSLTASHSFPTYYHRIQPLAGGAPNGQVFPEAKMMPSLPFLHAMNYAGLH YGYMAKALGCAPAAHPSGIPSPWSVQHSMFRAGPGASPAEKDLLELKIGPPQSSKNTS MLSQASSISVI" CDS complement(join(24708938..24709243,24709319..24709495, 24709587..24709804,24710144..24710417)) /locus_tag="TCM_014838" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene21159" /codon_start=1 /product="Myb-like transcription factor family protein, putative isoform 2" /protein_id="EOY22763.1" /db_xref="TAIR:AT5G61620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK38" /translation="MVKETGRKCSHCGHNGHNSRTCHGKGCVKLFGVNISAVEKQESF MKKSFSMESLRSHHAEYNNNAPSVDDGYLSDGQIHSRKSNAARERKRGKPWTEEEHRI FLAGLRKLGKGDWRGISKKFVTTRTPTQVASHAQKYFLRQAGNDKKKRRPSLFDMAFQ ELESNASPPGSPAEQTTRDSSDQVKAPSPIANRFPHLCLDDRPVTSLTASHSFPTYYH RIQPLQAGGAPNGQVFPEAKMMPSLPFLHAMNYAGLHYGYMAKALGCAPAAHPSGIPS PWSVQHSMFRAGPGASPAEKDLLELKIGPPQSSKNTSMLSQASSISVI" gene 24711738..24723305 /locus_tag="TCM_014839" /note="dbxref CacaoGD:Thecc1EG014839" mRNA join(24711738..24711954,24712304..24712429, 24712779..24712926,24713147..24713202,24713836..24713950, 24714076..24714235,24714366..24714505,24715365..24715427, 24715535..24715656,24717255..24717319,24717701..24717753, 24717861..24717914,24717998..24718057,24718573..24718619, 24718716..24718831,24719407..24719623,24720188..24720236, 24720650..24720733,24721240..24721319,24721863..24721952, 24722241..24723305) /locus_tag="TCM_014839" /product="VEFS-Box of polycomb protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014336" /inference="similar to AA sequence:Phytozome:GSVIVT01013898001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04788t00001" mRNA join(24711738..24711954,24712779..24712926, 24713147..24713202,24713836..24713950,24714076..24714235, 24714366..24714505,24715365..24715427,24715535..24715656, 24717255..24717319,24717701..24717753,24717861..24717914, 24717998..24718057,24718573..24718619,24718716..24718831, 24719407..24719623,24720188..24720236,24720650..24720733, 24721240..24721319,24721863..24721952,24722241..24723305) /locus_tag="TCM_014839" /product="VEFS-Box of polycomb protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014336" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015891t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013898001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b014334t1a2; inference alignment:Newbler:10:TSA:cgbaB_g04788t00001" CDS join(24712392..24712429,24712779..24712926, 24713147..24713202,24713836..24713950,24714076..24714235, 24714366..24714505,24715365..24715427,24715535..24715656, 24717255..24717319,24717701..24717753,24717861..24717914, 24717998..24718057,24718573..24718619,24718716..24718831, 24719407..24719623,24720188..24720236,24720650..24720733, 24721240..24721319,24721863..24721952,24722241..24722364) /locus_tag="TCM_014839" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="VEFS-Box of polycomb protein isoform 1" /protein_id="EOY22764.1" /db_xref="Phytozome:GSVIVT01013898001" /db_xref="TAIR:AT5G51230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I2N5" /translation="MPGIPLVARETASYSRSTDQMCREDSRLHLSAEEELAAEESLSI YCKPVELYNILQRRAVRNPSFLQRCLRYKIQAKHKMRIQMTVSVSGIVNGGVLTQSLF PLYILLARLVSDVAVAEYSAVYRFRRACILTSFTGIEGSNQAQANFILPEINKLAIEA KSGSLAILLVSFANGGGCCLWGRIPLESLYMSLEKSPNLSLGQRAEMTLPVEMHSCSL KLNCLNEDKCILIQNSSNSLSMNQSLQLQVIISAEEAGAKEKSPYNSYTCSGISSSSL SHIIRLRAGNVIFNYRYYNNKLQRTEVTEDFSCPFCLVKCASFKGLRHHLPASHDLFH FEFWVTEEYQAVNVSVKTDIWRSEIVADGVDPKQQTFFFCSKQLRRRRPKSLVARHVN PVFLEPNLPAGDCELLDKVHGGNILQNARIGEVECVQHVPSSFNVAGVSGAAGQSYSD SERVQSVSGNNLGPPALLQFAKTRKLSMERSDPRNRTLLQKRQFFHSHRAQPMAIDQV MSDRDSEDEVDDDVADFEDRRMLDDFVDVTKDEKQIMHLWNSFVRKQRVLADGHISWA CEAFSKLHGRDLVKAPALIWCWRLFMIKLWNHGLLDARTMNNCNIILEQYQKQGSDPI KG" mRNA join(24712555..24712926,24713147..24713202, 24713836..24713950,24714076..24714235,24714366..24714505, 24715365..24715427,24715550..24715656,24717255..24717319, 24717701..24717753,24717861..24717914,24717998..24718057, 24718573..24718619,24718716..24718831,24719407..24719623, 24720188..24720236,24720650..24720733,24721240..24721319, 24721863..24721952,24722241..24722759) /locus_tag="TCM_014839" /product="VEFS-Box of polycomb protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014336" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015891t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013898001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc721t4; inference alignment:Newbler:10:TSA:cgbaB_g04788t00001" mRNA join(24712555..24712926,24713147..24713202, 24713836..24713950,24714076..24714235,24714366..24714505, 24715365..24715427,24715556..24715656,24717255..24717319, 24717701..24717753,24717861..24717914,24717998..24718057, 24718573..24718619,24718716..24718831,24719407..24719623, 24720188..24720236,24720650..24720733,24721240..24721319, 24721863..24721952,24722241..24722759) /locus_tag="TCM_014839" /product="VEFS-Box of polycomb protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m014336" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015891t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013898001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc721t1; inference alignment:Newbler:10:TSA:cgbaB_g04788t00001" CDS join(24712801..24712926,24713147..24713202, 24713836..24713950,24714076..24714235,24714366..24714505, 24715365..24715427,24715535..24715656,24717255..24717319, 24717701..24717753,24717861..24717914,24717998..24718057, 24718573..24718619,24718716..24718831,24719407..24719623, 24720188..24720236,24720650..24720733,24721240..24721319, 24721863..24721952,24722241..24722364) /locus_tag="TCM_014839" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015891t1" /codon_start=1 /product="VEFS-Box of polycomb protein isoform 2" /protein_id="EOY22765.1" /db_xref="Phytozome:GSVIVT01013898001" /db_xref="TAIR:AT5G51230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I2N5" /translation="MCREDSRLHLSAEEELAAEESLSIYCKPVELYNILQRRAVRNPS FLQRCLRYKIQAKHKMRIQMTVSVSGIVNGGVLTQSLFPLYILLARLVSDVAVAEYSA VYRFRRACILTSFTGIEGSNQAQANFILPEINKLAIEAKSGSLAILLVSFANGGGCCL WGRIPLESLYMSLEKSPNLSLGQRAEMTLPVEMHSCSLKLNCLNEDKCILIQNSSNSL SMNQSLQLQVIISAEEAGAKEKSPYNSYTCSGISSSSLSHIIRLRAGNVIFNYRYYNN KLQRTEVTEDFSCPFCLVKCASFKGLRHHLPASHDLFHFEFWVTEEYQAVNVSVKTDI WRSEIVADGVDPKQQTFFFCSKQLRRRRPKSLVARHVNPVFLEPNLPAGDCELLDKVH GGNILQNARIGEVECVQHVPSSFNVAGVSGAAGQSYSDSERVQSVSGNNLGPPALLQF AKTRKLSMERSDPRNRTLLQKRQFFHSHRAQPMAIDQVMSDRDSEDEVDDDVADFEDR RMLDDFVDVTKDEKQIMHLWNSFVRKQRVLADGHISWACEAFSKLHGRDLVKAPALIW CWRLFMIKLWNHGLLDARTMNNCNIILEQYQKQGSDPIKG" CDS join(24712801..24712926,24713147..24713202, 24713836..24713950,24714076..24714235,24714366..24714505, 24715365..24715427,24715550..24715656,24717255..24717319, 24717701..24717753,24717861..24717914,24717998..24718057, 24718573..24718619,24718716..24718831,24719407..24719623, 24720188..24720236,24720650..24720733,24721240..24721319, 24721863..24721952,24722241..24722364) /locus_tag="TCM_014839" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015891t1" /codon_start=1 /product="VEFS-Box of polycomb protein isoform 3" /protein_id="EOY22766.1" /db_xref="Phytozome:GSVIVT01013898001" /db_xref="TAIR:AT5G51230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I2N5" /translation="MCREDSRLHLSAEEELAAEESLSIYCKPVELYNILQRRAVRNPS FLQRCLRYKIQAKHKMRIQMTVSVSGIVNGGVLTQSLFPLYILLARLVSDVAVAEYSA VYRFRRACILTSFTGIEGSNQAQANFILPEINKLAIEAKSGSLAILLVSFANGGGCCL WGRIPLESLYMSLEKSPNLSLGQRAEMTLPVEMHSCSLKLNCLNEDKCILIQNSSNSL SMLQVIISAEEAGAKEKSPYNSYTCSGISSSSLSHIIRLRAGNVIFNYRYYNNKLQRT EVTEDFSCPFCLVKCASFKGLRHHLPASHDLFHFEFWVTEEYQAVNVSVKTDIWRSEI VADGVDPKQQTFFFCSKQLRRRRPKSLVARHVNPVFLEPNLPAGDCELLDKVHGGNIL QNARIGEVECVQHVPSSFNVAGVSGAAGQSYSDSERVQSVSGNNLGPPALLQFAKTRK LSMERSDPRNRTLLQKRQFFHSHRAQPMAIDQVMSDRDSEDEVDDDVADFEDRRMLDD FVDVTKDEKQIMHLWNSFVRKQRVLADGHISWACEAFSKLHGRDLVKAPALIWCWRLF MIKLWNHGLLDARTMNNCNIILEQYQKQGSDPIKG" CDS join(24712801..24712926,24713147..24713202, 24713836..24713950,24714076..24714235,24714366..24714505, 24715365..24715427,24715556..24715656,24717255..24717319, 24717701..24717753,24717861..24717914,24717998..24718057, 24718573..24718619,24718716..24718831,24719407..24719623, 24720188..24720236,24720650..24720733,24721240..24721319, 24721863..24721952,24722241..24722364) /locus_tag="TCM_014839" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG015891t1" /codon_start=1 /product="VEFS-Box of polycomb protein isoform 4" /protein_id="EOY22767.1" /db_xref="Phytozome:GSVIVT01013898001" /db_xref="TAIR:AT5G51230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I2N5" /translation="MCREDSRLHLSAEEELAAEESLSIYCKPVELYNILQRRAVRNPS FLQRCLRYKIQAKHKMRIQMTVSVSGIVNGGVLTQSLFPLYILLARLVSDVAVAEYSA VYRFRRACILTSFTGIEGSNQAQANFILPEINKLAIEAKSGSLAILLVSFANGGGCCL WGRIPLESLYMSLEKSPNLSLGQRAEMTLPVEMHSCSLKLNCLNEDKCILIQNSSNSL SMVIISAEEAGAKEKSPYNSYTCSGISSSSLSHIIRLRAGNVIFNYRYYNNKLQRTEV TEDFSCPFCLVKCASFKGLRHHLPASHDLFHFEFWVTEEYQAVNVSVKTDIWRSEIVA DGVDPKQQTFFFCSKQLRRRRPKSLVARHVNPVFLEPNLPAGDCELLDKVHGGNILQN ARIGEVECVQHVPSSFNVAGVSGAAGQSYSDSERVQSVSGNNLGPPALLQFAKTRKLS MERSDPRNRTLLQKRQFFHSHRAQPMAIDQVMSDRDSEDEVDDDVADFEDRRMLDDFV DVTKDEKQIMHLWNSFVRKQRVLADGHISWACEAFSKLHGRDLVKAPALIWCWRLFMI KLWNHGLLDARTMNNCNIILEQYQKQGSDPIKG" gene 24723836..24724385 /locus_tag="TCM_014840" /note="dbxref CacaoGD:Thecc1EG014840" mRNA 24723836..24724385 /locus_tag="TCM_014840" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS 24723964..24724251 /locus_tag="TCM_014840" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22768.1" /translation="MNYDSMESVLTSKALRMLYYCRTKLMSETKLFKVHFDELVYSDE QAIDGKSNNRQCRCLQFCNVKYNEMLVGKNIHGSKVITLHINIKGMVDSFT" mobile_element complement(24725076..24726172) /note="source:CACAO_Again_on_E108_scaffold_4 1 1122" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24727214..24727291) /note="source:INTACT296_F13_scaffold_9-int 13189 13267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24727246..24727305 /note="source:INTACT296_F13_scaffold_9-int 13196 13256" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24727718..24728911 /locus_tag="TCM_014841" /note="dbxref CacaoGD:Thecc1EG014841" mRNA 24727718..24728911 /locus_tag="TCM_014841" /product="Zinc finger C-x8-C-x5-C-x3-H type family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013901001" /inference="similar to AA sequence:Phytozome:GSVIVT01013901001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2652t1" CDS 24728102..24728845 /locus_tag="TCM_014841" /codon_start=1 /product="Zinc finger C-x8-C-x5-C-x3-H type family protein, putative" /protein_id="EOY22769.1" /db_xref="Phytozome:GSVIVT01013901001" /db_xref="TAIR:AT5G07500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U773" /translation="MLKGVNPNFINFAEQQLISGLNLTQRAQYNNAIDEAIYGSDEFR MYAYKIKRCTRMRSHDWTECPYAHRGEKAQRRDPRKVPYTAIACPAFRNGRCQKGDAC EFAHGVFEYWLHPARYRTRACNAGTFCQRKVCFFAHTPDQLRAESKCKCPFAYKGRMN GGDELLMGIGSGGGEGSTSIQAHDFSVPFASTVNRDCCSFEGFSDFLRRLRAFKIREE EERAMRNGGGFEVSDSDLPHLDWISELVK" gene complement(24729145..24735351) /locus_tag="TCM_014842" /note="dbxref CacaoGD:Thecc1EG014842" mRNA complement(join(24729145..24729175,24731790..24735351)) /locus_tag="TCM_014842" /product="Disease resistance family protein / LRR family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014843t1" /inference="similar to AA sequence:ricco:30131.m007188" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(24732138..24735215) /locus_tag="TCM_014842" /note="dbxref ricco:30131.m007188; paralog of Thecc1EG014843t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein, putative" /protein_id="EOY22770.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWY1" /translation="MIMDSSKKVGTIGFSELLSLVVLVISCFCDAISEAACLESERQA LLRFTQDLTDNSSRLASWSNGGDCCDWTGVVCDNLTGHVLELHLGNIHDPNDDVLVPG KAFERSRLSGKINTSLLDLKHLQYLDLSGNNFGGQIPGFLGSLQNLRYLNLSTAGFEG LIPPQLGNLTKLQYLDLHDLLSVFLYAENLQWLTSLAQLQHLDLSGISLSKASDWLQV TNALPSLIVLRLSYCQLDPVPPLKNVNFSSLGTLDLSYNEFSNSFIYSWIFELNSLVS LDLSLNSFQGHFPDGLRNMSSLRYLSLASNQFNSSIPNWMYGFNHLQDLDLGSNNLQG RISEDVGNLTSAISLDFGYSNLEGAALRSLGSLCSLRSLVLSGIKLSQDVSEVLQSLS GCLSDGLESLFLAKCELSGHLTNQLGRFKNLHDLYMARNSISGPMPDSLRLLTSLRAV DLSENQLNGTFPEWLGQLRELEVLWIGQNSLHGVVSEVHFSNVTRLRLLQASGNRLSL KASPGWIPPFQLGVIALSSWNLGPSFPRWLRFQKDFVFLDISVAGIVDTLPDWFWNLS SQFFYMNLSHNQIQGRVPGILSTIPPLGYPSSIDLNSNFFEGSLPCLPSNVGTLDLSN NSFSGPISPFLCCNMEEPKNLGNLRLADNHLSGPIPDCWMNSPNLISIDFKNNNLSGS LPRSMGSLSLLQSLHLRKNNISGVLPLSLQNCSSLLALDLSENKFEGSIPSWIGEKLS KIMIVGLRANNFQGDIPHTLCALSYLTILDLAHNNLSGNIPKCFTNFSAMASKRNSSD PISYAFGHFKNSIETTLVVIKGILLEYSSTLRLVTSMDLSDNNLSGEIPVEITGLLGL RSLNLSTNLLTGRIPETIGKMGTLESVDFSFNQLSGAIPSSISNLTFLSYLNVAYNKL TGKIPLSTQLQSFDASNFAGNDLCGPPLTDNCSINAVIPGAENREKTGDGFEVDWFWF SASMALGFIIAFWSVAGPLLFKRSWRSAYFRMLDNMGEKIQGVFANNCLTQRS" gene complement(24735634..24740343) /locus_tag="TCM_014843" /note="dbxref CacaoGD:Thecc1EG014843" mRNA complement(join(24735634..24735854,24736667..24740343)) /locus_tag="TCM_014843" /product="Disease resistance family protein / LRR family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g31730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014842t1" /inference="similar to AA sequence:ricco:30131.m007188" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS complement(24736764..24739883) /locus_tag="TCM_014843" /note="dbxref ricco:30131.m007188; paralog of Thecc1EG014842t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein, putative" /protein_id="EOY22771.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWY1" /translation="MFHGSSTTDPLSLYILSPCCMIMVGSLRVVASVFFVLLILASTV QNFCAANTNVTCHEIERQALLEFKQDLSDPSGRLASWGNNLNCCDWTGVVCDNSNGHV LELRLRNPLDPYKGFYIPSEAYAKVWFGGKVNPSLLDLKHLRYLDLSGSNFGGIIPKF LSSMQSLRYLNLSAAGFGGLIPPQLGNLTNLRFLDLHDLSSLLYVENLQWLSNLVKLQ HLDLSRVDLSRASDWFQVTNALPSLVELHLSGCQLDHLPPQTNFNFSSLFILDLSSNS FSNPLIPSWIFRLKSLVSLDLSHNNFEGPLPDGLRNFSSLRYLNLYWNKFNSSIPTWL YGFRSLEFLNLGSNNLHGPISNDFGNLTSVATLYLSDNELEGVVPRSMGSLCSLKKID LSGLKLSHDLSEVLEALSSGCLSDRLESLYLDRCELSGHLTDQLLEFKILADLSLSRN SISGPIPVSLGFLASLRTLDLSRNRVNGTFPESIGQLWKMEKLWLSRNLLEGAVTEIH FANLTRLRLFHASGNPLVLKVSPQWVPPFHLGLMGFSSWYLGPKFPSWLRYQKDFVYL DISVTGIIDTIPNWFWNLSTMFFSLNLSHNQIYGKVPEFIASSPLLGVPVYIDLNSNY FDGPLPCLSSKVNTLDLSNNSFSGPVSPLLCCKMDEPKWLEILHMADNHLSGKIPDCW MNWPNLVSIDLKNNNLSGNIPSSIGSLSLLQSLHLGKNNLSGVLPSSLQNCTKLLAID LGENNFVGNIPAWMGERLSDIIIVSLRSNSFEGQIPDKLCALSYLAILDLAHNNLSGS IPKCFKNFSAMAATQNSSDPISYAFGHFGTSLETMLLMIKGILLEYGSILQLVTSIDL SDNNLSGEIPAEIANLLGLRFMNLSNNHLTGMIPKDIGNMRLLESIDLSWNQISGEIP PGMSALTFLSYLNLSHNNLTGKIPSSTQLQSFNISSYEGNNLCGPPLLDICSPDATTP ADKTRGRKADGFEVEWFWFYVSMPLGFVVGFWIVMGPLLFNKSWRFAYFRILDRMEHK IRAVATNGR" gene complement(24744382..24745722) /locus_tag="TCM_014844" /note="dbxref CacaoGD:Thecc1EG014844" mRNA complement(join(24744382..24745090,24745205..24745722)) /locus_tag="TCM_014844" /product="Oleosin 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s15020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037237t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11760.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00098t00004" CDS complement(join(24744967..24745090,24745205..24745497)) /locus_tag="TCM_014844" /note="paralog of Thecc1EG037237t1" /codon_start=1 /product="Oleosin 1" /protein_id="EOY22772.1" /db_xref="Phytozome:POPTR_0001s11760.1" /db_xref="TAIR:AT4G25140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6SZ13" /translation="MAEHLQLQQQYHHPYSQPRSHQMVKAATAATAGGSLLILSGLIL AGTVIALTIATPLFVIFSPVLVPALIAAALLVTGFMASGGFGVAAITVLSWIYRYVTG GHPPGADQLDQARMTLARKAREMNEGPEQLTSAAAS" gene complement(24752257..24754171) /locus_tag="TCM_014845" /note="dbxref CacaoGD:Thecc1EG014845" mRNA complement(24752257..24754171) /locus_tag="TCM_014845" /product="AP2/ERF domain-containing transcription factor, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014331" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015898t1" /inference="similar to AA sequence:ricco:30147.m014331" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11846t00001" CDS complement(24753255..24754073) /locus_tag="TCM_014845" /note="dbxref ricco:30147.m014331; paralog of Thecc1EG015898t1" /codon_start=1 /product="AP2/ERF domain-containing transcription factor, putative" /protein_id="EOY22773.1" /db_xref="TAIR:AT4G17500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GYE3" /translation="MNEVTMCELSFPHQYPRSSSFSCLNSCLTEHWGDLPLKVDDSED MIIYNSLHEALNFGWSPTSDSTVAASVKAEPGDEPEMMTGPVMEVSPMGLTQPAAATA TQMLFGSAFMGISSQNRSSFFMGKQEKCFRNGNQKVVKGRHYRGVRQRPWGKFAAEIR DPAKNGARVWLGTYETAEEAALAYDRAAYRMRGSRALLNFPHRIGNNEPEPVRVTAKR REHDPALYNSSSPKRKKSLAANEAELERASRGLDVFQLGHQMGLMPVGEQLLVN" gene complement(24762373..24764465) /locus_tag="TCM_014846" /note="dbxref CacaoGD:Thecc1EG014846" mRNA complement(join(24762373..24762625,24763196..24764021, 24764112..24764229,24764315..24764465)) /locus_tag="TCM_014846" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010873t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(24763388..24764021,24764112..24764229, 24764315..24764411)) /locus_tag="TCM_014846" /note="paralog of Thecc1EG010873t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22774.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P621" /translation="MAPKYKIEKIWKYVWTELAPFKVEAFIWLLMHKKLVVTCLLNAK KRGKFRLVGGSCAVVNELFPLTSEPSLKNEVIFSGKEWNVDQCLDLVKVRVASWSNAE WPTDHFSIMDTNREPLARCQPRKNRKNIKNTLWTAPDERTLKFNIDGAAQECPRLVGI GGLLPNYKGEVKIIFCKHIGEADSNLAKYRTIMEAFAIFAVSKWKEDYSLLIESDSCN AIKWIKAPASAPWRLKKWTLQIERFKEIIGNWSIKHTKRDVNQRANRLAKDGVHLSHD ILRVFE" mobile_element complement(24764641..24765579) /note="source:CACAO_M_E69946_F329_scaffold_9 4234 5199" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24765879..24766509 /note="source:INTACT782_F329_scaffold_10-int 4812 5480" /mobile_element_type="retrotransposon:LTR/Copia" gene 24766876..24771356 /locus_tag="TCM_014847" /note="dbxref CacaoGD:Thecc1EG014847" mRNA join(24766876..24768096,24768214..24768444) /locus_tag="TCM_014847" /product="AP2/ERF domain-containing transcription factor, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene21166" /inference="similar to AA sequence:Phytozome:POPTR_0003s15040.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03703t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8996t1" mRNA join(24766896..24768095,24770860..24771356) /locus_tag="TCM_014847" /product="Integrase-type DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21166" /inference="similar to AA sequence:Phytozome:POPTR_0003s15040.1" /note="transcript variant 1; alternatively spliced; quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8996t1" CDS join(24767338..24768095,24770860..24771169) /locus_tag="TCM_014847" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY22775.1" /db_xref="Phytozome:POPTR_0003s15040.1" /db_xref="TAIR:AT5G51190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NBQ9" /translation="MASPEETSALKLIRQHLLTDFASMENFLSNLDNCTSRVSATNQI PQFVDTKVPKAPQNNSPKQLKQSTLSQRRPSINVEIPPAKVNISSNPAPVESDSNEKR HYRGVRRRPWGKFAAEIRDPNRKGARVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNF PLEAGQSNSAEPELIEDSSSRKRRREKEDEEEESVASKGVKREEVTEEKVVMPVAKET VTVTETVTPGVCLTPSNWTGFWDSEDMKGIFSIPPERLLKEMANLIGIDLMDNNCVRE FELSNRKRDLSLLTRLLPIVELDLLLNSFPPISLTRPNEPYWAISLFVKFTVASANEA LRGVLPFDGGLNSGVWKLAWQ" CDS join(24767338..24768096,24768214..24768318) /locus_tag="TCM_014847" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="AP2/ERF domain-containing transcription factor, putative isoform 2" /protein_id="EOY22776.1" /db_xref="Phytozome:POPTR_0003s15040.1" /db_xref="TAIR:AT5G51190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NBQ9" /translation="MASPEETSALKLIRQHLLTDFASMENFLSNLDNCTSRVSATNQI PQFVDTKVPKAPQNNSPKQLKQSTLSQRRPSINVEIPPAKVNISSNPAPVESDSNEKR HYRGVRRRPWGKFAAEIRDPNRKGARVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNF PLEAGQSNSAEPELIEDSSSRKRRREKEDEEEESVASKGVKREEVTEEKVVMPVAKET VTVTETVTPGVCLTPSNWTGFWDSEDMKGIFSIPPVEMSKKDTAKGHSTVNKEKLFKG RGSIISVHKVD" gene complement(24771422..24777501) /locus_tag="TCM_014848" /note="dbxref CacaoGD:Thecc1EG014848" mRNA complement(join(24771422..24771506,24776410..24776522, 24776973..24777065,24777259..24777501)) /locus_tag="TCM_014848" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc7538t1" mobile_element complement(24773044..24774540) /note="source:scaffold_5_CACTA_0596 5577 7079" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24773201..24774542 /note="source:scaffold_3_CACTA_0384 8989 10336" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(24776438..24776522,24776973..24777065, 24777259..24777404)) /locus_tag="TCM_014848" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22777.1" /translation="MILSFDINKAKLGTLQREVPSWYWALMKKIVYVLSYVLGPSNLC KCIHSCYPLRAKGKLLCYLKGPCPNHRTTFMHLLASFRMTYNKQWISKGKIHCNSVIK LFQFT" gene 24777616..24778598 /locus_tag="TCM_014850" /note="dbxref CacaoGD:Thecc1EG014850" mRNA 24777616..24778598 /locus_tag="TCM_014850" /product="Ethylene-responsive element binding factor, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s15060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014847t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s15060.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9778t2" CDS 24777652..24778326 /locus_tag="TCM_014850" /note="paralog of Thecc1EG014847t2" /codon_start=1 /product="Ethylene-responsive element binding factor, putative" /protein_id="EOY22778.1" /db_xref="Phytozome:POPTR_0003s15060.1" /db_xref="TAIR:AT5G07580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5YLQ7" /translation="MATIEESTTLEFIRQHLLGDFASADAFITSLDFGLSQLQPIIKP ENPIPELEHDSPISDPNNQIPDIFSCDVKPEVVDLESPRSIISVYNPEPKLSLCEERR HYRGVRRRPWGKFAAEIRDPSRKGSRVWLGTFESDVDAAKAYDCAAFKMRGHKAILNF PLEAGEAGPPASTGRKRRRVNGIKLPECDVMSPESIELAWEVKEEEGEPHYLNQLSPL TRRQVG" gene complement(24778834..24779591) /locus_tag="TCM_014851" /note="dbxref CacaoGD:Thecc1EG014851" mRNA complement(join(24778834..24779199,24779359..24779591)) /locus_tag="TCM_014851" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4834t2" CDS complement(join(24779166..24779199,24779359..24779492)) /locus_tag="TCM_014851" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22779.1" /translation="MHQHEEDGGQALSPHQRWLFISAKCFGLTWFCLHPRLSKRALGL REPTITGWSSF" gene complement(24779867..24788221) /locus_tag="TCM_014852" /note="dbxref CacaoGD:Thecc1EG014852" mRNA complement(join(24779867..24779913,24780304..24780510, 24780786..24780940,24781704..24781752,24782290..24782514, 24782753..24782793,24782939..24783068,24784757..24784825, 24784947..24785000,24785117..24785275,24786054..24786191, 24786272..24786334,24786490..24786529,24786640..24786686, 24787434..24788221)) /locus_tag="TCM_014852" /product="Phosphofructokinase 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013938001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037235t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013938001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1214t10" CDS complement(join(24780343..24780510,24780786..24780940, 24781704..24781752,24782290..24782514,24782753..24782793, 24782939..24783068,24784757..24784825,24784947..24785000, 24785117..24785275,24786054..24786191,24786272..24786334, 24786490..24786529,24786640..24786686,24787434..24787688)) /locus_tag="TCM_014852" /note="paralog of Thecc1EG037235t1" /codon_start=1 /product="Phosphofructokinase 4" /protein_id="EOY22780.1" /db_xref="Phytozome:GSVIVT01013938001" /db_xref="TAIR:AT5G61580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKG3" /translation="MDLSIPSPLSKASPPSTFLSSQSHKLPRSPCVHYLNFTSRNSSL KKPLVSRQTLPIRAQLSDQTVDDGFALDDVPHLTNFLPDLPSYPNPLQQSQAYAIVKQ TFVRPEDVVAQKIVVHKDSPRGVHFRRAGPREKVYFKSEEVRACIVTCGGLCPGINTV IREIVCGLNYMYGVDDILGIQGGYRGFYSKNTLPLTPKVVNDIHKRGGTFLRTSRGGH DTHKIVDNIQDRGINQVYIIGGDGTQRGAARIYEEVEKRGLQVAVAGIPKTIDNDIAV IDKSFGFDTAVEEAQRAIDAAHVEVESVENGIGIVKLMGRYSGFIAMFATLASRDVDC CLIPESPFYLEGKGGLFEFIEERLKENRHIVIVVAEGAGQEYVAQSMHGIDEKDASGN RLLLDVGLWLTQNIKDHFTKERKMEINMKYIDPTYMIRAIPSNASDNIYCTLLAQSAV HGAMAGYTGFTVGPVNSRHAYIPISHVTETQNTVKLTDRMWARLLASTNQPSFLNCDE AIGGKVCKDTIDLINNMKITSI" mobile_element complement(24784315..24784422) /note="source:CACAO_M_E12463_F12_scaffold_3 4647 4707" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24788358..24792188) /locus_tag="TCM_014855" /note="dbxref CacaoGD:Thecc1EG014855" mRNA complement(join(24788358..24788653,24788738..24788866, 24788996..24789093,24789422..24789545,24789639..24789691, 24789792..24789847,24789962..24790125,24790517..24790759, 24790883..24790953,24791279..24791346,24791802..24792152)) /locus_tag="TCM_014855" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s15100.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038871t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s15100.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6070t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6070t4" mRNA complement(join(24788358..24788653,24788996..24789093, 24789422..24789545,24789639..24789691,24789792..24789847, 24789962..24790125,24790517..24790759,24790883..24790993)) /locus_tag="TCM_014855" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s15100.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038871t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s15100.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6070t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8978t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6070t4" CDS complement(join(24788555..24788653,24788996..24789093, 24789422..24789545,24789639..24789691,24789792..24789847, 24789962..24790125,24790517..24790759,24790883..24790939)) /locus_tag="TCM_014855" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG038871t2" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY22782.1" /db_xref="Phytozome:POPTR_0003s15100.1" /db_xref="TAIR:AT5G51180.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9Y4" /translation="MSKLTLDGVDVMGERLTKEVLDVIQEKPNLRKISFVAHSVGGLV ARYAIGRLYRPPKEEDKEDMSGNGCKEEPRGTIGGLEAMNFITVATPHLGSRGNKQVP FLFGVTAFEKAASCVIHWIFRRTGRHLFLTDDDEGKPPLLKWMLEDHDEFYFMSALRI FKRRVLYSNVGYDHIVGWRTSSIRRDSELPKWEESLNETYPHIVYEEHCKACDADRYE NISTEDDGSSDKLEGELVRGLSRVSWEKVDVSFHSSRQRFAAHSVIQLNGSPLSLVLS KHGYDNCDYNSSSHEEILCIH" CDS complement(join(24788795..24788866,24788996..24789093, 24789422..24789545,24789639..24789691,24789792..24789847, 24789962..24790125,24790517..24790759,24790883..24790953, 24791279..24791346,24791802..24791938)) /locus_tag="TCM_014855" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG038871t2" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY22781.1" /db_xref="Phytozome:POPTR_0003s15100.2" /db_xref="TAIR:AT5G51180.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949V0" /translation="MESADVTNGVCSSESVNGSRDVWSCKDSDSLSADHLVIMLHGIL GSSSDWKFGAEQFVKRLPDKVFVHCSERNMSKLTLDGVDVMGERLTKEVLDVIQEKPN LRKISFVAHSVGGLVARYAIGRLYRPPKEEDKEDMSGNGCKEEPRGTIGGLEAMNFIT VATPHLGSRGNKQVPFLFGVTAFEKAASCVIHWIFRRTGRHLFLTDDDEGKPPLLKWM LEDHDEFYFMSALRIFKRRVLYSNVGYDHIVGWRTSSIRRDSELPKWEESLNETYPHI VYEEHCKACDADRYENISTEDDGSSDKLEGELVRGLSRVSWEKVDVSFHSSRQRFAAH SVIQVKDEVLHIEGADVIQHMIDHFLT" mRNA complement(join(24788886..24789093,24789422..24789499, 24789639..24789691,24789792..24789847,24789962..24790125, 24790517..24790759,24790883..24790953,24791279..24791346, 24791802..24792188)) /locus_tag="TCM_014855" /product="Catalytic, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s15100.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038871t3" /inference="similar to AA sequence:Phytozome:POPTR_0003s15100.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1256t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6070t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g8978t1" CDS complement(join(24789425..24789499,24789639..24789691, 24789792..24789847,24789962..24790125,24790517..24790759, 24790883..24790953,24791279..24791346,24791802..24791938)) /locus_tag="TCM_014855" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG038871t3" /codon_start=1 /product="Catalytic, putative isoform 3" /protein_id="EOY22783.1" /db_xref="Phytozome:POPTR_0003s15100.2" /db_xref="TAIR:AT5G51180.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9Y4" /translation="MESADVTNGVCSSESVNGSRDVWSCKDSDSLSADHLVIMLHGIL GSSSDWKFGAEQFVKRLPDKVFVHCSERNMSKLTLDGVDVMGERLTKEVLDVIQEKPN LRKISFVAHSVGGLVARYAIGRLYRPPKEEDKEDMSGNGCKEEPRGTIGGLEAMNFIT VATPHLGSRGNKQVPFLFGVTAFEKAASCVIHWIFRRTGRHLFLTDDDEGKPPLLKWM LEDHDEFYFMSALRIFKRRVLYSNVGYDHIVGWRTSSIRRDSELPKNTARPVMLIGMK IFQQRMTAHLTS" mobile_element complement(24792743..24792872) /note="source:CACAO_PIF_E119_scaffold_3 4485 4615" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(24792873..24792994) /note="source:scaffold_1_CACTA_0008 14126 14382" /mobile_element_type="transposon:TIR/CACTA" gene complement(24793540..24794624) /locus_tag="TCM_014856" /note="dbxref CacaoGD:Thecc1EG014856" mRNA complement(24793540..24794624) /locus_tag="TCM_014856" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(24794314..24794571) /locus_tag="TCM_014856" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22784.1" /translation="MNVVPSGKATQKHSYAIKSELLTVGNVLACFCLVTCSHCPGCIS FQLVLLRARLLQTMLWLHSYIRAPDVTLYFSGFTHRRPADI" gene complement(24794553..24804614) /locus_tag="TCM_014857" /note="dbxref CacaoGD:Thecc1EG014857" mRNA complement(join(24794553..24795401,24795514..24795598, 24797037..24797258,24797491..24797666,24798210..24798273, 24798738..24798832,24800134..24800221,24800452..24800579, 24801470..24801601,24801682..24801762,24801838..24801996, 24802239..24803611,24804109..24804614)) /locus_tag="TCM_014857" /product="ARABIDILLO-1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014278" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005696t1" /inference="similar to AA sequence:ricco:30147.m014278" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1357t3" mRNA complement(join(24794703..24795401,24795514..24795601, 24797037..24797258,24797491..24797666,24798210..24798273, 24798738..24798832,24800134..24800221,24800452..24800579, 24801470..24801601,24801682..24801762,24801838..24801996, 24802239..24803328)) /locus_tag="TCM_014857" /product="ARABIDILLO-1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014278" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005696t1" /inference="similar to AA sequence:ricco:30147.m014278" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6050t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1357t3" CDS complement(join(24795228..24795401,24795514..24795598, 24797037..24797258,24797491..24797666,24798210..24798273, 24798738..24798832,24800134..24800221,24800452..24800579, 24801470..24801601,24801682..24801762,24801838..24801996, 24802239..24803591)) /locus_tag="TCM_014857" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014278; paralog of Thecc1EG005696t1" /codon_start=1 /product="ARABIDILLO-1 isoform 1" /protein_id="EOY22785.1" /db_xref="TAIR:AT2G44900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK31" /translation="MTRRVRQKCSHSKDKDKTDISLDTLDSGCLNSATACGVDWTTLP DDTVIQLFSYLNYRDRASLSSTCQTFRLLGSSLCLWDSLDLRPHNFDTAAAVSLSSRC KNLQRLKFHAAGSADAIVSLQARALREISGDFCQDITDAALSVIAARHEMLESVHLGP EACERISSDAIKALAYCCPRLRSLWMSGVREVSGDAMNALAKHCRQLKDVGFVESDNI DEVALGNMNSVKLLSVAGTRNLKWGSAVQVWSRLPHLVGLDVSRTDVNQSAVTRLLSS SQNLKVLVALNCPVFEGELDSNTMHNQKGGILLTFLGDILKGVASLFADNAKNVRDVF KYWRRLKNRDKNLDEIVVWIEWVFSHSLLRIAENNLKEFDDFWLTQGAAVLLSLLESS QEEVRERAATAVATFVVIDDENATVDCQRAEAILRGDGIRLLLNLARSCQEGLQSEAA KAIANLSIDSKVAKAVAESGGINILANLAKSMNRLVAEEAAGGLWNLSVGDEHKGAIA EAGGIKALVDLIFKWPSNTDGLLERATGALANLGADEKCSMEVAAAGGVHALVMLART CKFEGVQEQAARALANLAAHGDSNSNNAAIGQEAGALEALVQLTYSLNEGVRQEAAGA LWNLSFDDKNREAIAATGGVEALVALAQSSSSASQGLQERAAGALWGLSVSETNSIAI GRQGGIAPLIALARSDIVDVHETAAGALWNLAFYRDNALRIVQDGGVQPLVHLCSSSI SKMARFMAALALVYMFDGRIDGAVPMGHSSQGSSKTLNMDGVGRMALKHVEEFVISFY DPQTFYTAAASLVPTALAQIAEAIRIPEAGHLRCSGAEIDRFVRMLRDPSSILKSCSA FALSQFTMPGGRHAMHHSGLLQNAGAPRVLRAAAAASTAPIQAKIFAKIVLRNLEHHH EVSS" CDS complement(join(24795228..24795401,24795514..24795601, 24797037..24797258,24797491..24797666,24798210..24798273, 24798738..24798832,24800134..24800221,24800452..24800579, 24801470..24801601,24801682..24801762,24801838..24801996, 24802239..24803138)) /locus_tag="TCM_014857" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014278; paralog of Thecc1EG005696t1" /codon_start=1 /product="ARABIDILLO-1 isoform 2" /protein_id="EOY22786.1" /db_xref="TAIR:AT2G44900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK31" /translation="MLESVHLGPEACERISSDAIKALAYCCPRLRSLWMSGVREVSGD AMNALAKHCRQLKDVGFVESDNIDEVALGNMNSVKLLSVAGTRNLKWGSAVQVWSRLP HLVGLDVSRTDVNQSAVTRLLSSSQNLKVLVALNCPVFEGELDSNTMHNQKGGILLTF LGDILKGVASLFADNAKNVRDVFKYWRRLKNRDKNLDEIVVWIEWVFSHSLLRIAENN LKEFDDFWLTQGAAVLLSLLESSQEEVRERAATAVATFVVIDDENATVDCQRAEAILR GDGIRLLLNLARSCQEGLQSEAAKAIANLSIDSKVAKAVAESGGINILANLAKSMNRL VAEEAAGGLWNLSVGDEHKGAIAEAGGIKALVDLIFKWPSNTDGLLERATGALANLGA DEKCSMEVAAAGGVHALVMLARTCKFEGVQEQAARALANLAAHGDSNSNNAAIGQEAG ALEALVQLTYSLNEGVRQEAAGALWNLSFDDKNREAIAATGGVEALVALAQSSSSASQ GLQERAAGALWGLSVSETNSIAIGRQGGIAPLIALARSDIVDVHETAAGALWNLAFYR DNALRIVQDGGVQPLVHLCSSSISKMARFMAALALVYMFDGRIDGAVPMGHSSQGSSK TLNMDGVGRMALKHVEEFVISFYDPQTFYTAAASLVPTALAQIAEAIRIPEAGHLRCS SGAEIDRFVRMLRDPSSILKSCSAFALSQFTMPGGRHAMHHSGLLQNAGAPRVLRAAA AASTAPIQAKIFAKIVLRNLEHHHEVSS" gene complement(24804997..24809509) /locus_tag="TCM_014858" /note="dbxref CacaoGD:Thecc1EG014858" mRNA complement(join(24804997..24806139,24806817..24806927, 24807149..24807218,24807317..24807538,24808076..24808564, 24809229..24809462)) /locus_tag="TCM_014858" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014277" /inference="similar to AA sequence:Phytozome:GSVIVT01013975001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07658t00001" mRNA complement(join(24805407..24806139,24807149..24807218, 24807317..24807538,24808076..24808564,24809229..24809429)) /locus_tag="TCM_014858" /product="Transducin/WD40 repeat-like superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m014277" /inference="similar to AA sequence:frave:gene21168" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc161t2; inference alignment:Newbler:10:TSA:cgbaB_g07658t00001" mRNA complement(join(24805407..24806087,24806817..24806924, 24807149..24807218,24807317..24807538,24808076..24808564, 24809229..24809429)) /locus_tag="TCM_014858" /product="Transducin/WD40 repeat-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014277" /inference="similar to AA sequence:frave:gene21168" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc161t1; inference alignment:Newbler:10:TSA:cgbaB_g07658t00001" mRNA complement(join(24805452..24806139,24806817..24806924, 24807149..24807218,24807317..24807538,24808076..24808564, 24809229..24809509)) /locus_tag="TCM_014858" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014277" /inference="similar to AA sequence:frave:gene21168" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6061t1; inference alignment:Newbler:10:TSA:cgbaB_g07658t00001" CDS complement(join(24805772..24806139,24807149..24807218, 24807317..24807538,24808076..24808564,24809229..24809345)) /locus_tag="TCM_014858" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene21168" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 4" /protein_id="EOY22790.1" /db_xref="TAIR:AT5G07590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVR9" /translation="MEFTEAYKQTGPCCFSPNARYIAVAVDYRLVIRDTLSFRVVQLF SCLDKISYIEWALDSEYILCGLYKRPMIQAWSLTQPEWTCKIDEGPAGIAYARWSPDS RHILTTSEFQLRLTVWSLVNTACVHVQWPKHASKGVSFTKDGKFAAICTRRDCKDYIN LLSCHSWEIMGVFAVDTLDLADLEWSPDDSAIVIWDSPLEYKVLIYSPDGRCLFKYQA YESGLGVKSVSWSPCGQFLAVGSYDQMLRVLNHLTWKTFAEFMHLSTVRAPCCAAVFK EVDEPLQLDMSELCLDDDFMRGSGLLSWSNDSQFICTRNDSMPTALWIWDIRHLELAA ILVQKDPIRAAVWDPICTRLVLCTGSSHLYMWTASGAYCVSNPLPQFSITDLKWNRDG SCLLLKDKESFCCAAVPLLPESSDYSSDD" CDS complement(join(24805772..24806139,24806817..24806924, 24807149..24807218,24807317..24807538,24808076..24808564, 24809229..24809345)) /locus_tag="TCM_014858" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene21168" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY22788.1" /db_xref="TAIR:AT5G07590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVR9" /translation="MEFTEAYKQTGPCCFSPNARYIAVAVDYRLVIRDTLSFRVVQLF SCLDKISYIEWALDSEYILCGLYKRPMIQAWSLTQPEWTCKIDEGPAGIAYARWSPDS RHILTTSEFQLRLTVWSLVNTACVHVQWPKHASKGVSFTKDGKFAAICTRRDCKDYIN LLSCHSWEIMGVFAVDTLDLADLEWSPDDSAIVIWDSPLEYKVLIYSPDGRCLFKYQA YESGLGVKSVSWSPCGQFLAVGSYDQMLRVLNHLTWKTFAEFMHLSTVRAPCCAAVFK EVDEPLQLDMSELCLDDDFMRGSDAPEGHFKVRYEVMEVPITLPFQKPPADKPNPKQG IGLLSWSNDSQFICTRNDSMPTALWIWDIRHLELAAILVQKDPIRAAVWDPICTRLVL CTGSSHLYMWTASGAYCVSNPLPQFSITDLKWNRDGSCLLLKDKESFCCAAVPLLPES SDYSSDD" CDS complement(join(24805772..24806139,24806817..24806927, 24807149..24807218,24807317..24807538,24808076..24808564, 24809229..24809345)) /locus_tag="TCM_014858" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY22787.1" /db_xref="Phytozome:GSVIVT01013975001" /db_xref="TAIR:AT5G07590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVR9" /translation="MEFTEAYKQTGPCCFSPNARYIAVAVDYRLVIRDTLSFRVVQLF SCLDKISYIEWALDSEYILCGLYKRPMIQAWSLTQPEWTCKIDEGPAGIAYARWSPDS RHILTTSEFQLRLTVWSLVNTACVHVQWPKHASKGVSFTKDGKFAAICTRRDCKDYIN LLSCHSWEIMGVFAVDTLDLADLEWSPDDSAIVIWDSPLEYKVLIYSPDGRCLFKYQA YESGLGVKSVSWSPCGQFLAVGSYDQMLRVLNHLTWKTFAEFMHLSTVRAPCCAAVFK EVDEPLQLDMSELCLDDDFMRGSADAPEGHFKVRYEVMEVPITLPFQKPPADKPNPKQ GIGLLSWSNDSQFICTRNDSMPTALWIWDIRHLELAAILVQKDPIRAAVWDPICTRLV LCTGSSHLYMWTASGAYCVSNPLPQFSITDLKWNRDGSCLLLKDKESFCCAAVPLLPE SSDYSSDD" CDS complement(join(24806041..24806087,24806817..24806924, 24807149..24807218,24807317..24807538,24808076..24808564, 24809229..24809345)) /locus_tag="TCM_014858" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene21168" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 3" /protein_id="EOY22789.1" /db_xref="TAIR:AT5G07590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVR9" /translation="MEFTEAYKQTGPCCFSPNARYIAVAVDYRLVIRDTLSFRVVQLF SCLDKISYIEWALDSEYILCGLYKRPMIQAWSLTQPEWTCKIDEGPAGIAYARWSPDS RHILTTSEFQLRLTVWSLVNTACVHVQWPKHASKGVSFTKDGKFAAICTRRDCKDYIN LLSCHSWEIMGVFAVDTLDLADLEWSPDDSAIVIWDSPLEYKVLIYSPDGRCLFKYQA YESGLGVKSVSWSPCGQFLAVGSYDQMLRVLNHLTWKTFAEFMHLSTVRAPCCAAVFK EVDEPLQLDMSELCLDDDFMRGSDAPEGHFKVRYEVMEVPITLPFQKPPADKPNPKQG IACLLLSGSGTYAIWS" gene 24809747..24827750 /locus_tag="TCM_014859" /note="dbxref CacaoGD:Thecc1EG014859" mRNA join(24809747..24810158,24810253..24810466, 24810604..24810699,24810782..24810899,24810980..24811153, 24811307..24811477,24812086..24812141,24812250..24812339, 24812420..24812568,24812830..24812912,24813006..24813134, 24813235..24813309,24813595..24813763,24814322..24814461, 24814558..24814650,24815829..24816066,24816622..24816716, 24816811..24816963,24817047..24817227,24817779..24817912, 24818041..24818122,24818208..24818370,24818797..24818872, 24819017..24819190,24819342..24819410,24819497..24819601, 24820257..24820346,24820907..24821118,24821266..24821476, 24821589..24821771,24822056..24822151,24822237..24822304, 24822375..24822717,24823506..24823721,24824016..24824672, 24824764..24825173,24825604..24825853,24826374..24826544, 24826949..24827750) /locus_tag="TCM_014859" /product="U3 small nucleolar RNA-associated protein 10 and NUC211 domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014276" /inference="similar to AA sequence:ricco:30147.m014276" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc369t1" CDS join(24809999..24810158,24810253..24810466, 24810604..24810699,24810782..24810899,24810980..24811153, 24811307..24811477,24812086..24812141,24812250..24812339, 24812420..24812568,24812830..24812912,24813006..24813134, 24813235..24813309,24813595..24813763,24814322..24814461, 24814558..24814650,24815829..24816066,24816622..24816716, 24816811..24816963,24817047..24817227,24817779..24817912, 24818041..24818122,24818208..24818370,24818797..24818872, 24819017..24819190,24819342..24819410,24819497..24819601, 24820257..24820346,24820907..24821118,24821266..24821476, 24821589..24821771,24822056..24822151,24822237..24822304, 24822375..24822717,24823506..24823721,24824016..24824672, 24824764..24825173,24825604..24825853,24826374..24826544, 24826949..24827179) /locus_tag="TCM_014859" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014276" /codon_start=1 /product="U3 small nucleolar RNA-associated protein 10 and NUC211 domain-containing protein, putative isoform 1" /protein_id="EOY22791.1" /db_xref="TAIR:AT3G06530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JAY0" /translation="MASSIASQLQAIKSFIQADSEPQKRPFTRPSILFNPKEAADIDI DTILNIALSGLEVLVGVDDRFRNYKNDLFSHKSKELDRELMGVDDNNQINDSISSYLR LLSGHLQHAASLKTLEYLIRRYKIHVYNIEDLVLCVLPYHDTHAFVRIVQLINTGNSK WKFLDGVKVSGAPPPRAVVVQQCIRDMGVLEALCNYASATKKFQASRPVISFCTAVII EVLGSVTTIDTDTVKRIHPFVASGLQTGTEGGSDHKAGALMIVGLLANKVALSPKLVN SLIRSVAEVARKDVKESTDLLWLRLSLMALINLVQSQSVDTFPKKALEILRDIRDIAG ILLELSKDFNIDRFLTILLEALVDQSSSDDSYHLALISVIDTVPLTNLVDHIVSKILL CCMRLSEKDGNSASSESGTWAKKILAAIHKNYPSQFHGAVHKFLEDTKVQSKKEDTVC EFLSKILDGNLDLSMVVPESKIWFASHHPKPEVRRATFSGLNRSAILKLRSLDPQRLV TIKDVILRQLHDDDLTVVQAALSLDWFTEIISPLELLEALHHVLKRCLSFLTSGSSVN STLSCDVAVSFLKVAVFSFHDQIDYLKEVASMIFPLLLNLPETQRLSLKVLDLAKEVK WPFFQTLAAVSGEDVKLLSGSSVDMEPVSRFEKKMQKRGSVSTVNIEIVGSLSEAFLM NPHEYLPWLTRSCSDLKSSKTLCFLVLMQSFSMSKNNGKFLVLFEACFPVLKSEWEAF GSVVDASLQEFNEEMLDWDCRKFLDQLFVADIDSLNTYILICIFWRLLEAFISASSTE VFLDDSEKAINRVQDFFIFVAVSNLKYAFKKRLRDLVEKHLHDFLTKCKISPVRFLSS FFTAEDVPFAVQVESLHCFAFLCSQLDDRLPFELLAEFPSLLVPLARENQATRFAAMD CIEKLHKLWCQVDFSSKKNGNTAVWSHFLDELLGLMVQQKRLILSDKNFLPSFLTCLL SSSCDSILVSPNIEQRFNQSTKEKILAFILSSALKLSGSGKLKVLSLLKGLGNTILHV KEVESLLSLLLRKHSQYHLDLENSSLKLSEIEIRILCLLLEICVMPSSLLGGQISEDY VLKALQLDFKSPEDPAIIEPCVTVLQKLSNQFYSGLTTEAQGHLFRQLILLFHNSNGD IRSATRDALLRLNIASSTVSQMLDLVLKEDPLVTSSAHGKKKKKLAGNLKAGYHCDIV SRGEWSLSFLSSLLDALLLKKDIANRQFLVGPLFNLLGKFFSDEWGHGALTQDERLIQ TSGVSQTMSSAICYIQQALLLILEDIFASFINANSPLKAGIINKIDIQILVDCARLIE DGETRNHVFTLLSSVVKLVPNRILEHTLDILTVIGESAVSQIDSHSQHVFEDLISAIV PCWLSKTNNTEKLLEIFINILPGVAEHRRLSIIIFLLRILGETDSLASLLVILFRSLV SRKGLSCLNATHASDRFSAQKEWEYAFAVQICGQHSSLIWLPSLVMVLQLIGQSDLSQ ELVMQLLFAMDFVLHKLQDPEFSLKLESRESSDSIQRKLGELMEQVVSLLQVVDARRK QIGIPVATWKDFRACVDAILKTITMTMIPSTCFECITKLLGNADGTVRKKALGILCET VKDHGSVKSKRKEKRELDLNSNSFELHLDDTSLELFQKMCAEIVQIVDDSIEKSNALL KLAAISTLEILAQRFSSNYSVFSMCLASVTKGISSENLAVSSSCLKTTGALLNVLGPR ALAELPCIMENVIKKSREISVSSELKSKTDENSSILLLILVTLEAVVDKLGGFLNPYL GDVIELMVLHPAYVSGSDLKLKLKADLVRKLLTDKIPVRLTLQPLLKTYSGVVKSGDS SLVIAFEMLANLVTKMDRASVSGYYGKIFDQCMLALDLRRQHPVSVQTIDVVEKSVIN ALVSLTMKLTENMFKPLFAKSIEWAEAEVEDVAGSGSPNIDRAISFYSLVNKLVENHR SLFVPYFKYLVKGCIQLLGDFGVFKASNLVQKKKKAKIQDGNLGNHMLSLKSWHLRAL ILSSLQKCFLHDTGRLKFLDSSNFQVLLKPIVSQLVIEPPTSIEEHPDTPSVKEVDDL LVGCIGQMAVTAGTDLLWKPLNHEVLMQTRSEKMRARVLGLRIVKQFLDNLKEEYLVL LAETIPFLAELLEDVELPVKSLAQDILKEMETMSGESLREYL" mRNA join(24813740..24813763,24814322..24814461, 24814558..24814650,24815823..24816066,24816622..24816716, 24816811..24816963,24817047..24817227,24817779..24817912, 24818041..24818122,24818208..24818370,24818797..24818872, 24819017..24819190,24819342..24819410,24819497..24819601, 24820257..24820346,24820907..24821118,24821266..24821476, 24821589..24821771,24822056..24822151,24822237..24822304, 24822375..24822717,24823506..24823721,24824016..24824672, 24824764..24825173,24825604..24825853,24826374..24826544, 24826949..24827645) /locus_tag="TCM_014859" /product="U3 small nucleolar RNA-associated protein 10 and NUC211 domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014276" /inference="similar to AA sequence:ricco:30147.m014276" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc369t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc369t1" CDS join(24814429..24814461,24814558..24814650, 24815823..24816066,24816622..24816716,24816811..24816963, 24817047..24817227,24817779..24817912,24818041..24818122, 24818208..24818370,24818797..24818872,24819017..24819190, 24819342..24819410,24819497..24819601,24820257..24820346, 24820907..24821118,24821266..24821476,24821589..24821771, 24822056..24822151,24822237..24822304,24822375..24822717, 24823506..24823721,24824016..24824672,24824764..24825173, 24825604..24825853,24826374..24826544,24826949..24827179) /locus_tag="TCM_014859" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014276" /codon_start=1 /product="U3 small nucleolar RNA-associated protein 10 and NUC211 domain-containing protein, putative isoform 2" /protein_id="EOY22792.1" /db_xref="TAIR:AT3G06530.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JAY0" /translation="MIFPLLLNLPETQRLSLKVLDLAKEVKWPFFQTLAAVSGEDVLQ KLLSGSSVDMEPVSRFEKKMQKRGSVSTVNIEIVGSLSEAFLMNPHEYLPWLTRSCSD LKSSKTLCFLVLMQSFSMSKNNGKFLVLFEACFPVLKSEWEAFGSVVDASLQEFNEEM LDWDCRKFLDQLFVADIDSLNTYILICIFWRLLEAFISASSTEVFLDDSEKAINRVQD FFIFVAVSNLKYAFKKRLRDLVEKHLHDFLTKCKISPVRFLSSFFTAEDVPFAVQVES LHCFAFLCSQLDDRLPFELLAEFPSLLVPLARENQATRFAAMDCIEKLHKLWCQVDFS SKKNGNTAVWSHFLDELLGLMVQQKRLILSDKNFLPSFLTCLLSSSCDSILVSPNIEQ RFNQSTKEKILAFILSSALKLSGSGKLKVLSLLKGLGNTILHVKEVESLLSLLLRKHS QYHLDLENSSLKLSEIEIRILCLLLEICVMPSSLLGGQISEDYVLKALQLDFKSPEDP AIIEPCVTVLQKLSNQFYSGLTTEAQGHLFRQLILLFHNSNGDIRSATRDALLRLNIA SSTVSQMLDLVLKEDPLVTSSAHGKKKKKLAGNLKAGYHCDIVSRGEWSLSFLSSLLD ALLLKKDIANRQFLVGPLFNLLGKFFSDEWGHGALTQDERLIQTSGVSQTMSSAICYI QQALLLILEDIFASFINANSPLKAGIINKIDIQILVDCARLIEDGETRNHVFTLLSSV VKLVPNRILEHTLDILTVIGESAVSQIDSHSQHVFEDLISAIVPCWLSKTNNTEKLLE IFINILPGVAEHRRLSIIIFLLRILGETDSLASLLVILFRSLVSRKGLSCLNATHASD RFSAQKEWEYAFAVQICGQHSSLIWLPSLVMVLQLIGQSDLSQELVMQLLFAMDFVLH KLQDPEFSLKLESRESSDSIQRKLGELMEQVVSLLQVVDARRKQIGIPVATWKDFRAC VDAILKTITMTMIPSTCFECITKLLGNADGTVRKKALGILCETVKDHGSVKSKRKEKR ELDLNSNSFELHLDDTSLELFQKMCAEIVQIVDDSIEKSNALLKLAAISTLEILAQRF SSNYSVFSMCLASVTKGISSENLAVSSSCLKTTGALLNVLGPRALAELPCIMENVIKK SREISVSSELKSKTDENSSILLLILVTLEAVVDKLGGFLNPYLGDVIELMVLHPAYVS GSDLKLKLKADLVRKLLTDKIPVRLTLQPLLKTYSGVVKSGDSSLVIAFEMLANLVTK MDRASVSGYYGKIFDQCMLALDLRRQHPVSVQTIDVVEKSVINALVSLTMKLTENMFK PLFAKSIEWAEAEVEDVAGSGSPNIDRAISFYSLVNKLVENHRSLFVPYFKYLVKGCI QLLGDFGVFKASNLVQKKKKAKIQDGNLGNHMLSLKSWHLRALILSSLQKCFLHDTGR LKFLDSSNFQVLLKPIVSQLVIEPPTSIEEHPDTPSVKEVDDLLVGCIGQMAVTAGTD LLWKPLNHEVLMQTRSEKMRARVLGLRIVKQFLDNLKEEYLVLLAETIPFLAELLEDV ELPVKSLAQDILKEMETMSGESLREYL" gene 24827797..24830618 /locus_tag="TCM_014860" /note="dbxref CacaoGD:Thecc1EG014860" mRNA join(24827797..24828191,24828277..24828490, 24828623..24828789,24828925..24829049,24829421..24829481, 24829868..24829916,24830074..24830281,24830394..24830420) /locus_tag="TCM_014860" /product="Ubiquinol-cytochrome C chaperone family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014275" /inference="similar to AA sequence:Phytozome:GSVIVT01013977001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc786t3" mRNA join(<24827870..24828191,24828277..24828490, 24828704..24828789,24828925..24829049,24829421..24829481, 24829868..24829916,24830074..24830281,24830394..24830618) /locus_tag="TCM_014860" /product="Ubiquinol-cytochrome C chaperone family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014275" /inference="similar to AA sequence:Phytozome:GSVIVT01013977001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc786t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc786t3" CDS join(<24827871..24828191,24828277..24828490, 24828704..24828789,24828925..24829049,24829421..24829481, 24829868..24829916,24830074..24830150) /locus_tag="TCM_014860" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ubiquinol-cytochrome C chaperone family protein isoform 2" /protein_id="EOY22794.1" /db_xref="Phytozome:GSVIVT01013977001" /db_xref="TAIR:AT5G51220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU52" /translation="DEVIWTARYSKFAILSLRWEKKGLGLGKLKQQINFHKTPWVIEE IHISSEKKMLPRWNRALAHLSKLRSFNSIELGKDFSMIHRQSYAAVAPAAPDSPDKSF PARSTVNLDKMFWSKPCSLALAPDSPLRVEDPKYDGIKRIILKMMLFYSKQSKSIRGA NVIYRRVLSQVDKPAIYEAEGKDGVELGQYLYEIYNHDVELRVSKAGVNLLLTKWMKE LEKIFYGNIVAYDAALLPVAKQEELTDIIWRNVFSDDGTSKPDAAALRTVQAMARYVR REVTCLSLTDKEAMFSGNFMFTSLENSSPDPMRR" mRNA join(24827927..24828191,24828277..24828490, 24828623..24828789,24828925..24829049,24829421..24829481, 24829865..24829916,24830074..24830553) /locus_tag="TCM_014860" /product="Ubiquinol-cytochrome C chaperone family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014275" /inference="similar to AA sequence:Phytozome:GSVIVT01013977001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6083t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc786t3" CDS join(24828027..24828191,24828277..24828490, 24828623..24828789,24828925..24829049,24829421..24829481, 24829865..24829916,24830074..24830150) /locus_tag="TCM_014860" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ubiquinol-cytochrome C chaperone family protein isoform 3" /protein_id="EOY22795.1" /db_xref="Phytozome:GSVIVT01013977001" /db_xref="TAIR:AT5G51220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU52" /translation="MLPRWNRALAHLSKLRSFNSIELGKDFSMIHRQSYAAVAPAAPD SPDKSFPARSTVNLDKMFWSKPCSLALAPDSPLRVEDPKYDGIKRIILKMMLFYSKQS KSIRGANVIYRRVLSQVDKPAIYEVFNLEKTFKMTFSLLVLHMWLCLRRLKAEGKDGV ELGQYLYEIYNHDVELRVSKAGVNLLLTKWMKELEKIFYGNIVAYDAALLPVAKQEEL TDIIWRNVFSDDGTSKPDAAALRTVQQAMARYVRREVTCLSLTDKEAMFSGNFMFTSL ENSSPDPMRR" CDS join(24828027..24828191,24828277..24828490, 24828623..24828789,24828925..24829049,24829421..24829481, 24829868..24829916,24830074..24830150) /locus_tag="TCM_014860" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ubiquinol-cytochrome C chaperone family protein isoform 1" /protein_id="EOY22793.1" /db_xref="Phytozome:GSVIVT01013977001" /db_xref="TAIR:AT5G51220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU52" /translation="MLPRWNRALAHLSKLRSFNSIELGKDFSMIHRQSYAAVAPAAPD SPDKSFPARSTVNLDKMFWSKPCSLALAPDSPLRVEDPKYDGIKRIILKMMLFYSKQS KSIRGANVIYRRVLSQVDKPAIYEVFNLEKTFKMTFSLLVLHMWLCLRRLKAEGKDGV ELGQYLYEIYNHDVELRVSKAGVNLLLTKWMKELEKIFYGNIVAYDAALLPVAKQEEL TDIIWRNVFSDDGTSKPDAAALRTVQAMARYVRREVTCLSLTDKEAMFSGNFMFTSLE NSSPDPMRR" gene 24830829..24832997 /locus_tag="TCM_014861" /note="dbxref CacaoGD:Thecc1EG014861" mRNA 24830829..24832997 /locus_tag="TCM_014861" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017506001" /inference="similar to AA sequence:Phytozome:GSVIVT01017506001" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Newbler:10:TSA:cgbaB_g16825t00001" mobile_element 24831260..24831352 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3884 3963" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 24831399..24832622 /locus_tag="TCM_014861" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY22796.1" /db_xref="Phytozome:GSVIVT01017506001" /db_xref="TAIR:AT5G07610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TZD2" /translation="MLSTKRSRASSSNSYQLLSSSSADLIASDDNILTLILLCLPLKC LLKFKTVSKHWLSLITDPRFSPKYDCRTTSGLFARRLSGQTKAEYDFINLTPNPSRAP FQSLTFVDDPSGIRILQSCNGLLLCCSFRANRPETTYYIYNPTTKQYTVLPGLGPGPR GRSSRNTFGVSLAFDPSKSPHYKVICIRNCDSDLPDHYQIEIYSSRSGPWRPSCCPFA APINVQFKNGVFWNGALHWLSDWGDSLCFDVEEERIRDLPMAPVVGDVRLYRYFGQSG GHLHLIEVYGSDTLQFDVYEMERDYSGWFVKYQVDLNPIAAAFPEMARGYVDPVDLHS YAFSILSVVQQESDEDSFLVLHLPNKAIRYNFKDGSFSKLHDFAPLRTRVGGDGSLEF DCYDAYQFTESFACV" gene 24833688..24835691 /locus_tag="TCM_014862" /note="dbxref CacaoGD:Thecc1EG014862" mRNA 24833688..24835691 /locus_tag="TCM_014862" /product="F-box family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014861t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400037810" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage" CDS 24833701..24834816 /locus_tag="TCM_014862" /note="paralog of Thecc1EG014861t1" /codon_start=1 /product="F-box family protein" /protein_id="EOY22797.1" /db_xref="Phytozome:PGSC0003DMP400037810" /db_xref="TAIR:AT5G07610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TZD2" /translation="MISMNRQEVQNSRTKPAEMIGNEDDILINGSSKFPSALFLRVPP SSNKPKYHFLSLDGNPVRDPIRSLTFADDSAGISILQSCNGLLLCRSNRRTGEYNRNY YIYNPTTNKYTILPQPANRIPNTIFCVILAFDPSRSSYYKVVFVRSSRSSPYLYQLEI YSSETQLWSYSSEIPKVNYSRWAYCCGAIYWMSYSRNFLCFEVDQERFREIPMPEIPD DWGQQPICRYFRELGGRLHLILTNGRHSTRQFDVYEMEKDLSGWFVKYRVDLNALISQ HPEMTRSYAHPSDWDYHAFSVLAVVCKESEGSFMVLHIPGKAISYSFKDRTCTLLHDF APGCTDIEGCTTFEGKDVYPYIGTFARVGSWPLANVG" gene complement(24836014..24838944) /locus_tag="TCM_014863" /note="dbxref CacaoGD:Thecc1EG014863" mRNA complement(join(24836014..24837264,24838380..24838944)) /locus_tag="TCM_014863" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014267" /inference="similar to AA sequence:ricco:30147.m014267" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6072t1" CDS complement(join(24836672..24837264,24838380..24838866)) /locus_tag="TCM_014863" /note="dbxref ricco:30147.m014267" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY22798.1" /db_xref="TAIR:AT5G07620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLR9" /translation="MKNTHMLKLALALSSTAFLFILVLIIFFYRKRAPRNDQVGDIES KEQKHEDESQIEDLITFSGGQDLTICDILDAPGEVIGKSNYGTLYKALLQRSNMVRLL RFLRPACALRDEEFGDVVQLLGCIRHPNLVPLLGFYAGPRGEKLLVHPFYRHGNLAQL LRDGNGECHRWTIMYKISIGMARGLDHLHTGLQKPVVHGNLKSKNILLDRNYQPYLSD FGLYLLLNPTSAQEMLEASAAEGYKAPELIKMRDASEETDVYSLGVIFLELLSGKEPI NEKPTPDEDFYLPNFMRNAVLDHRISDLYHPDILLQNSNDQGNPVTEESILKFFQLAM ACCSPSSSLRPNSRQVLLKLEEIGK" gene complement(24843391..24846974) /locus_tag="TCM_014866" /note="dbxref CacaoGD:Thecc1EG014866" mRNA complement(join(24843391..24843856,24845492..24845701, 24846411..24846974)) /locus_tag="TCM_014866" /product="HAD superfamily, subfamily IIIB acid phosphatase" /inference="alignment:exonerate- protein:2:ricco:30147.m014266" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037750t1" /inference="similar to AA sequence:ricco:30147.m014266" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01036t00001" CDS complement(join(24843679..24843856,24845492..24845701, 24846411..24846823)) /locus_tag="TCM_014866" /note="dbxref ricco:30147.m014266; paralog of Thecc1EG037750t1" /codon_start=1 /product="HAD superfamily, subfamily IIIB acid phosphatase" /protein_id="EOY22799.1" /db_xref="TAIR:AT4G25150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0M3" /translation="MLFFKLFLLFSLLSSTFCHETFNAHLLPRPLIIQYPEGIETQFE NFDEELQLQCTSWRFTVETNNLSPWKTIPEKCGGYVKDYMTGRGYTMDLERVANEAGV YAKSVELSGDGKDVWVFDIDETLLSNLPYYAEHGYGLEIFYPVEFDKWVQRGMAPAID PSLKLYEMVLDLGFKVFLLTGRSEEQRSVTIENLTKAGFQSWDKLILRDSEDHGKLAT VFKSEKRSKMVEEGFRILGNSGDQWSDLLGSSPSSRSFKLPNPMYYIP" gene complement(24847417..24855114) /locus_tag="TCM_014867" /note="dbxref CacaoGD:Thecc1EG014867" mRNA complement(join(24847417..24848509,24848738..24849499, 24849800..24850228,24850726..24850827,24851356..24851723, 24852360..24852559,24852952..24853073,24853155..24853234, 24853651..24853886,24854683..24855114)) /locus_tag="TCM_014867" /product="U-box domain-containing protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01014020001" /inference="similar to AA sequence:frave:gene21173" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b014359t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6092t3" mRNA complement(join(24847417..24848509,24848738..24849499, 24849800..24850228,24850726..24850827,24851356..24851723, 24852360..24852559,24852952..24853073,24853155..24853276, 24853651..24853886,24854683..24855114)) /locus_tag="TCM_014867" /product="U-box domain-containing protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01014020001" /inference="similar to AA sequence:Phytozome:POPTR_0004s24130.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6092t3" CDS complement(join(24848327..24848509,24848738..24849499, 24849800..24850228,24850726..24850827,24851356..24851723, 24852360..24852559,24852952..24853073,24853155..24853234, 24853651..24853858)) /locus_tag="TCM_014867" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene21173" /codon_start=1 /product="U-box domain-containing protein kinase family protein isoform 2" /protein_id="EOY22801.1" /db_xref="TAIR:AT4G25160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BC94" /translation="MEKKEIVEAEGEPVPVLPPPPTLNIGIAINGNRKSKYVVKWALE KFITEENVMFKLLHVRAKITTVPTPTAAYKKEVEWQTNEMLLPYKKMCAQRKGQVDVI VIESNDVANAIAEEVTKSTITKLVIGATSRGMFTRKLKKNNLSSRISVCTPSFCTVYA VSKGQLSSIRPSDSETNVSTKDDSSETSVSCKSSSSYTFSSETELGSVASYATFHSPS LPVQRFQALSTINQTFLHSSTSSLEINQSRSLESTQSRSPDINHSRCHSLDIVAGKDD MSTCRSSSETRQAVSRSSSCRSLPTDQQSVLSDQISTSDVLTDNSFSEHQVYVNFELE KLRTELRHVQGMYAIAQSETIDASRKLNALRKHRLEEAMKFKEISFKEEKAEELARQE KEKYEAARREVEHVKECADREASQRREAEMKAFHDAKEKEKLENVLIGSVQQYQKFTW EEIVSATSSFSEDLKVGMGAYGTVYKCMLHHTAVAVKVLRSKENSRTKQFQQELEILS KIRHPHLLLLLGACPEFPDHGCLVYEYMENGSLEERLLRKNNTPPIPWFERYRIAWEV ASALNFLHNSKPEPIIHRDLKPANILLDRNFVSKIGDVGLSMMLNADPLSSSTMYRDT GPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALTHVVETAIDDGNLP GILDSEAGPWPVEETRELAILGLSCAELRRKDRPGLKDQVLPVLERMKEVADRARISI SKVQSAPPNHFICPILKDVMDDPCVAADGYTYDRKAIEKWLDGNDKSPMTNLPLLNKN LLPNYNLLSAIVEWKSRKQ" CDS complement(join(24848327..24848509,24848738..24849499, 24849800..24850228,24850726..24850827,24851356..24851723, 24852360..24852559,24852952..24853073,24853155..24853276, 24853651..24853858)) /locus_tag="TCM_014867" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="U-box domain-containing protein kinase family protein isoform 1" /protein_id="EOY22800.1" /db_xref="Phytozome:POPTR_0004s24130.1" /db_xref="TAIR:AT4G25160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BC94" /translation="MEKKEIVEAEGEPVPVLPPPPTLNIGIAINGNRKSKYVVKWALE KFITEENVMFKLLHVRAKITTVPTPMGNFIPISQVRNDVAAAYKKEVEWQTNEMLLPY KKMCAQRKGQVDVIVIESNDVANAIAEEVTKSTITKLVIGATSRGMFTRKLKKNNLSS RISVCTPSFCTVYAVSKGQLSSIRPSDSETNVSTKDDSSETSVSCKSSSSYTFSSETE LGSVASYATFHSPSLPVQRFQALSTINQTFLHSSTSSLEINQSRSLESTQSRSPDINH SRCHSLDIVAGKDDMSTCRSSSETRQAVSRSSSCRSLPTDQQSVLSDQISTSDVLTDN SFSEHQVYVNFELEKLRTELRHVQGMYAIAQSETIDASRKLNALRKHRLEEAMKFKEI SFKEEKAEELARQEKEKYEAARREVEHVKECADREASQRREAEMKAFHDAKEKEKLEN VLIGSVQQYQKFTWEEIVSATSSFSEDLKVGMGAYGTVYKCMLHHTAVAVKVLRSKEN SRTKQFQQELEILSKIRHPHLLLLLGACPEFPDHGCLVYEYMENGSLEERLLRKNNTP PIPWFERYRIAWEVASALNFLHNSKPEPIIHRDLKPANILLDRNFVSKIGDVGLSMML NADPLSSSTMYRDTGPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIAL THVVETAIDDGNLPGILDSEAGPWPVEETRELAILGLSCAELRRKDRPGLKDQVLPVL ERMKEVADRARISISKVQSAPPNHFICPILKDVMDDPCVAADGYTYDRKAIEKWLDGN DKSPMTNLPLLNKNLLPNYNLLSAIVEWKSRKQ" gene complement(24856926..24859687) /locus_tag="TCM_014868" /note="dbxref CacaoGD:Thecc1EG014868" mRNA complement(join(24856926..24857436,24857708..24857868, 24858181..24858309,24858550..24858643,24858893..24858966, 24859053..24859188,24859333..24859687)) /locus_tag="TCM_014868" /product="DERLIN-1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:52298.m000042" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037755t1" /inference="similar to AA sequence:ricco:52298.m000042" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6077t2" mRNA complement(join(24857044..24857436,24857708..24857868, 24858181..24858309,24858550..24858643,24858893..24858969, 24859053..24859188,24859333..24859371)) /locus_tag="TCM_014868" /product="DERLIN-1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:52298.m000042" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037755t1" /inference="similar to AA sequence:ricco:52298.m000042" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6077t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6077t2" CDS complement(join(24857199..24857436,24857708..24857868, 24858181..24858309,24858550..24858643,24858893..24858966, 24859053..24859188,24859333..24859349)) /locus_tag="TCM_014868" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:52298.m000042; paralog of Thecc1EG037755t1" /codon_start=1 /product="DERLIN-1 isoform 1" /protein_id="EOY22802.1" /db_xref="TAIR:AT4G29330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0M6" /translation="MSTPAQYYESLPPVSKFYGVACLMTTSALYLGLYDPWNIALSYE DVFKRFQVWRLIINFFLLGPFSPSFAIHLIMIARYGVLLEKGPFDKRTADYVWMLIFG ALSLLVMGAIPFLWTPFMAGSLVFMIVYVWSREFPNAQISIYGIVTLKGFYLPWAFLA LDLIFGSRLMPDIIGMIAGHLYYFLTVLHPLAGGKYVFKTPLWVHKLVAYWGKGIQVN SPVQRDPSAGVAFQGRSFRLNGNRTRTSTPSEQERQAQANSSAASQPSSGDGVAFRGK SYRLSS" CDS complement(join(24857199..24857436,24857708..24857868, 24858181..24858309,24858550..24858643,24858893..24858969, 24859053..24859188,24859333..24859349)) /locus_tag="TCM_014868" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:52298.m000042; paralog of Thecc1EG037755t1" /codon_start=1 /product="DERLIN-1 isoform 2" /protein_id="EOY22803.1" /db_xref="TAIR:AT4G29330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0M6" /translation="MSTPAQYYESLPPVSKFYGVACLMTTSALYLGLYDPWNIALSYE DVFKRFQQVWRLIINFFLLGPFSPSFAIHLIMIARYGVLLEKGPFDKRTADYVWMLIF GALSLLVMGAIPFLWTPFMAGSLVFMIVYVWSREFPNAQISIYGIVTLKGFYLPWAFL ALDLIFGSRLMPDIIGMIAGHLYYFLTVLHPLAGGKYVFKTPLWVHKLVAYWGKGIQV NSPVQRDPSAGVAFQGRSFRLNGNRTRTSTPSEQERQAQANSSAASQPSSGDGVAFRG KSYRLSS" gene complement(24859571..24866902) /locus_tag="TCM_014869" /note="dbxref CacaoGD:Thecc1EG014869" mRNA complement(join(24859571..24860326,24860408..24860474, 24860653..24861030,24861603..24861704,24862022..24862171, 24864258..24864342,24864484..24864510,24864600..24864819, 24865177..24865269,24865489..24865581,24865691..24865858, 24865943..24866119,24866445..24866902)) /locus_tag="TCM_014869" /product="Diacylglycerol kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24150.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s24150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6114t4" mRNA complement(join(24859571..24860326,24860408..24860530, 24860653..24861030,24861603..24861704,24862022..24862171, 24864258..24864342,24864484..24864510,24864600..24864819, 24865177..24865269,24865489..24865581,24865691..24865858, 24865943..24866119,24866445..24866902)) /locus_tag="TCM_014869" /product="Diacylglycerol kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24150.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s24150.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b014361t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6114t4" mRNA complement(join(24859860..24860319,24860408..24860474, 24860653..24861030,24861603..24861704,24864599..24864819, 24865177..24865269,24865489..24865581,24865691..24865858, 24865943..24866119,24866445..24866811)) /locus_tag="TCM_014869" /product="Diacylglycerol kinase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24150.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s24150.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc669t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6114t4" mRNA complement(join(24859860..24860326,24860408..24860474, 24860653..24861030,24861603..24861704,24864599..24864819, 24865177..24865269,24865489..24865581,24865691..24865858, 24865943..24866119,24866445..24866811)) /locus_tag="TCM_014869" /product="Diacylglycerol kinase family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24150.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s24150.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc669t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6114t4" CDS complement(join(24860149..24860319,24860408..24860474, 24860653..24861030,24861603..24861704,24864599..24864819, 24865177..24865269,24865489..24865581,24865691..24865858, 24865943..24866119,24866445..24866618)) /locus_tag="TCM_014869" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Diacylglycerol kinase family protein isoform 4" /protein_id="EOY22807.1" /db_xref="Phytozome:POPTR_0004s24150.1" /db_xref="TAIR:AT5G51290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6USK2" /translation="MEINGGVCNSGDKSQREAEVEGEASSLSSNVLLNHTGEVTLTLN SDGLSWEALDSSDNCGSTCLGIEFVPKITTKTTTELQFSDIYAVELIHGGMIQESIST SARECFFGTDSHDSEMNHFIVHSFQKSMSQPCLWVLAVYTFGHKDLQTCQMWMNKIND SLNKEFGRPKNLLVFVHPMSGKANGLRTWETVAPIFSRAKINTKVVVTQRAGHAFDVM TSTTNEELNSYDGAVAVGGDGFFNEILNGYLRSRHKAPFPPAPSDFLDALGNDGSSLV HDPAGAGSGTHNEESYPLLPSLAHNELGFSHLGYGFYGDVIAESEKYRWMGPKRYDYA GTKVFLKHRSYEAEVAYLEVESDKNNSIPDASRMFDKVRSLKRKKSERIICRVNCNVC NTKPVYSSARSSPATPYMRPQETRWLKSKGQFLSVGAAIMSNRNERAPDGLVADAHLS DGFLHLLLIKDCPHALYLWHLTQLARKGGNPLNFDFVEHHKLLHSRPSARRVSGIWMV SFLKHTNFQRKCFVAWFAYLHLVLRYRRRRKDGLIKAVK" CDS complement(join(24860189..24860326,24860408..24860474, 24860653..24861030,24861603..24861704,24862022..24862171, 24864258..24864342,24864484..24864510,24864600..24864819, 24865177..24865269,24865489..24865581,24865691..24865858, 24865943..24866119,24866445..24866618)) /locus_tag="TCM_014869" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Diacylglycerol kinase family protein isoform 1" /protein_id="EOY22804.1" /db_xref="Phytozome:POPTR_0004s24150.1" /db_xref="TAIR:AT5G51290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6USK2" /translation="MEINGGVCNSGDKSQREAEVEGEASSLSSNVLLNHTGEVTLTLN SDGLSWEALDSSDNCGSTCLGIEFVPKITTKTTTELQFSDIYAVELIHGGMIQESIST SARECFFGTDSHDSEMNHFIVHSFQKSMSQPCLWVLAVYTFGHKDLQTCQMWMNKIND SLNKEFGRPKNLLVFVHPMSGKANGLRTWETVAPIFSRAKINTKVVVTQRAGHAFDVM TSTTNEELNSYDGAVAVGGDGFFNEILNGYLRSRHKAPFPPAPSDFLDALGNDGSSLV HDPAGAGSGTHNEESYPLLPSLAHNELGFSHLGTNNSSRSIDQEIEYPLPNQRFRFGI IPAGSTDAIVICTTGARDPITSALHIVLGKRVCLDVAQVVRWKTTSSSKVEPCVRYAA SFAGYGFYGDVIAESEKYRWMGPKRYDYAGTKVFLKHRSYEAEVAYLEVESDKNNSIP DASRMFDKVRSLKRKKSERIICRVNCNVCNTKPVYSSARSSPATPYMRPQETRWLKSK GQFLSVGAAIMSNRNERAPDGLVADAHLSDGFLHLLLIKDCPHALYLWHLTQLARKGG NPLNFDFVEHHKTPAFTFTSFGKESVWNLDGELFEAHKLSAQVFRGLVCLFASGPEV" CDS complement(join(24860189..24860326,24860408..24860474, 24860653..24861030,24861603..24861704,24864599..24864819, 24865177..24865269,24865489..24865581,24865691..24865858, 24865943..24866119,24866445..24866618)) /locus_tag="TCM_014869" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Diacylglycerol kinase family protein, putative isoform 3" /protein_id="EOY22806.1" /db_xref="Phytozome:POPTR_0004s24150.1" /db_xref="TAIR:AT5G51290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6USK2" /translation="MEINGGVCNSGDKSQREAEVEGEASSLSSNVLLNHTGEVTLTLN SDGLSWEALDSSDNCGSTCLGIEFVPKITTKTTTELQFSDIYAVELIHGGMIQESIST SARECFFGTDSHDSEMNHFIVHSFQKSMSQPCLWVLAVYTFGHKDLQTCQMWMNKIND SLNKEFGRPKNLLVFVHPMSGKANGLRTWETVAPIFSRAKINTKVVVTQRAGHAFDVM TSTTNEELNSYDGAVAVGGDGFFNEILNGYLRSRHKAPFPPAPSDFLDALGNDGSSLV HDPAGAGSGTHNEESYPLLPSLAHNELGFSHLGYGFYGDVIAESEKYRWMGPKRYDYA GTKVFLKHRSYEAEVAYLEVESDKNNSIPDASRMFDKVRSLKRKKSERIICRVNCNVC NTKPVYSSARSSPATPYMRPQETRWLKSKGQFLSVGAAIMSNRNERAPDGLVADAHLS DGFLHLLLIKDCPHALYLWHLTQLARKGGNPLNFDFVEHHKTPAFTFTSFGKESVWNL DGELFEAHKLSAQVFRGLVCLFASGPEV" mRNA complement(join(24860446..24860530,24860653..24861030, 24861603..24861704,24864599..24864819,24865177..24865269, 24865489..24865581,24865691..24865858,24865943..24866119, 24866445..24866811)) /locus_tag="TCM_014869" /product="Diacylglycerol kinase family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24150.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s24150.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc669t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6114t4" mRNA complement(join(24860446..24861030,24861603..24861704, 24864599..24864819,24865177..24865269,24865489..24865581, 24865691..24865858,24865943..24866119,24866445..24866811)) /locus_tag="TCM_014869" /product="Diacylglycerol kinase family protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24150.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s24150.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc669t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6114t4" CDS complement(join(24860488..24860530,24860653..24861030, 24861603..24861704,24862022..24862171,24864258..24864342, 24864484..24864510,24864600..24864819,24865177..24865269, 24865489..24865581,24865691..24865858,24865943..24866119, 24866445..24866618)) /locus_tag="TCM_014869" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Diacylglycerol kinase family protein isoform 2" /protein_id="EOY22805.1" /db_xref="Phytozome:POPTR_0004s24150.1" /db_xref="TAIR:AT5G51290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6USK2" /translation="MEINGGVCNSGDKSQREAEVEGEASSLSSNVLLNHTGEVTLTLN SDGLSWEALDSSDNCGSTCLGIEFVPKITTKTTTELQFSDIYAVELIHGGMIQESIST SARECFFGTDSHDSEMNHFIVHSFQKSMSQPCLWVLAVYTFGHKDLQTCQMWMNKIND SLNKEFGRPKNLLVFVHPMSGKANGLRTWETVAPIFSRAKINTKVVVTQRAGHAFDVM TSTTNEELNSYDGAVAVGGDGFFNEILNGYLRSRHKAPFPPAPSDFLDALGNDGSSLV HDPAGAGSGTHNEESYPLLPSLAHNELGFSHLGTNNSSRSIDQEIEYPLPNQRFRFGI IPAGSTDAIVICTTGARDPITSALHIVLGKRVCLDVAQVVRWKTTSSSKVEPCVRYAA SFAGYGFYGDVIAESEKYRWMGPKRYDYAGTKVFLKHRSYEAEVAYLEVESDKNNSIP DASRMFDKVRSLKRKKSERIICRVNCNVCNTKPVYSSARSSPATPYMRPQETRWLKSK GQFLSVGAAIMSNRNERAPDGLVADAHLSDGFLHLLLIKDCPHALYLCFSSLKELLLS DES" CDS complement(join(24860488..24860530,24860653..24861030, 24861603..24861704,24864599..24864819,24865177..24865269, 24865489..24865581,24865691..24865858,24865943..24866119, 24866445..24866618)) /locus_tag="TCM_014869" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Diacylglycerol kinase family protein isoform 5" /protein_id="EOY22808.1" /db_xref="Phytozome:POPTR_0004s24150.1" /db_xref="TAIR:AT5G51290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6USK2" /translation="MEINGGVCNSGDKSQREAEVEGEASSLSSNVLLNHTGEVTLTLN SDGLSWEALDSSDNCGSTCLGIEFVPKITTKTTTELQFSDIYAVELIHGGMIQESIST SARECFFGTDSHDSEMNHFIVHSFQKSMSQPCLWVLAVYTFGHKDLQTCQMWMNKIND SLNKEFGRPKNLLVFVHPMSGKANGLRTWETVAPIFSRAKINTKVVVTQRAGHAFDVM TSTTNEELNSYDGAVAVGGDGFFNEILNGYLRSRHKAPFPPAPSDFLDALGNDGSSLV HDPAGAGSGTHNEESYPLLPSLAHNELGFSHLGYGFYGDVIAESEKYRWMGPKRYDYA GTKVFLKHRSYEAEVAYLEVESDKNNSIPDASRMFDKVRSLKRKKSERIICRVNCNVC NTKPVYSSARSSPATPYMRPQETRWLKSKGQFLSVGAAIMSNRNERAPDGLVADAHLS DGFLHLLLIKDCPHALYLCFSSLKELLLSDES" CDS complement(join(24860649..24861030,24861603..24861704, 24864599..24864819,24865177..24865269,24865489..24865581, 24865691..24865858,24865943..24866119,24866445..24866618)) /locus_tag="TCM_014869" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Diacylglycerol kinase family protein isoform 6" /protein_id="EOY22809.1" /db_xref="Phytozome:POPTR_0004s24150.1" /db_xref="TAIR:AT5G51290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6USK2" /translation="MEINGGVCNSGDKSQREAEVEGEASSLSSNVLLNHTGEVTLTLN SDGLSWEALDSSDNCGSTCLGIEFVPKITTKTTTELQFSDIYAVELIHGGMIQESIST SARECFFGTDSHDSEMNHFIVHSFQKSMSQPCLWVLAVYTFGHKDLQTCQMWMNKIND SLNKEFGRPKNLLVFVHPMSGKANGLRTWETVAPIFSRAKINTKVVVTQRAGHAFDVM TSTTNEELNSYDGAVAVGGDGFFNEILNGYLRSRHKAPFPPAPSDFLDALGNDGSSLV HDPAGAGSGTHNEESYPLLPSLAHNELGFSHLGYGFYGDVIAESEKYRWMGPKRYDYA GTKVFLKHRSYEAEVAYLEVESDKNNSIPDASRMFDKVRSLKRKKSERIICRVNCNVC NTKPVYSSARSSPATPYMRPQETRWLKSKGQFLSVGAAIMSNRNERAPDGLVADAHLS DGFLHLLLIKDCPHALYLW" gene complement(24866954..24873351) /locus_tag="TCM_014870" /note="dbxref CacaoGD:Thecc1EG014870" mRNA complement(join(24866954..24867552,24867950..24868054, 24868574..24868632,24868725..24869117,24869226..24869290, 24872735..24872909,24873032..24873351)) /locus_tag="TCM_014870" /product="N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014263" /inference="similar to AA sequence:Phytozome:POPTR_0014s18850.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02103t00001" mRNA complement(join(24867160..24867552,24867950..24868054, 24868574..24868632,24868725..24869335)) /locus_tag="TCM_014870" /product="N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014263" /inference="similar to AA sequence:Phytozome:GSVIVT01013991001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02103t00002; inference alignment:Newbler:10:TSA:cgbaL_g02103t00001" CDS complement(join(24867333..24867552,24867950..24868054, 24868574..24868632,24868725..24869117,24869226..24869290, 24872735..24872909,24873032..24873088)) /locus_tag="TCM_014870" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein isoform 1" /protein_id="EOY22810.1" /db_xref="Phytozome:POPTR_0014s18850.1" /db_xref="TAIR:AT5G61540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56W64" /translation="MAPRNLSMSLVFLFTLFSLVIGHEGVGNSGKYPIVVSTWPFLEA VRAAWKAVDEGFNAVDAVVEGCSACEELRCDGTVGPGGSPDENGETTIDALLMNGVTM EVGAVAAMRYVKDGIRAARLVMQHTKHTMLVGDRAAAFAISMGLPGPTNLSSPESMEK WTRWKENHCQPNFWKNVLPVDSCGPYQSKDNMGLNKGVCSEAKAMGIIESRTSLVGPH NHDTISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADDEVGACGATGDG DIMMRFLPCYQVVESMRQGMEPKLAAKDAISRIARKFPDFVGAVVAINKNGVHAGACH GWTFQYSVRSPDMDDVKVFTVLP" CDS complement(join(24867333..24867552,24867950..24868054, 24868574..24868632,24868725..24869111)) /locus_tag="TCM_014870" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein isoform 2" /protein_id="EOY22811.1" /db_xref="Phytozome:GSVIVT01013991001" /db_xref="TAIR:AT5G61540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56W64" /translation="MEVGAVAAMRYVKDGIRAARLVMQHTKHTMLVGDRAAAFAISMG LPGPTNLSSPESMEKWTRWKENHCQPNFWKNVLPVDSCGPYQSKDNMGLNKGVCSEAK AMGIIESRTSLVGPHNHDTISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSA YADDEVGACGATGDGDIMMRFLPCYQVVESMRQGMEPKLAAKDAISRIARKFPDFVGA VVAINKNGVHAGACHGWTFQYSVRSPDMDDVKVFTVLP" gene complement(24869225..24871887) /locus_tag="TCM_014871" /note="dbxref CacaoGD:Thecc1EG014871" mRNA complement(join(24869225..24869290,24869407..24871887)) /locus_tag="TCM_014871" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031880t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10980.1" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1702t1" mobile_element complement(24870481..24872610) /note="source:scaffold_7_CACTA_0779 4082 6201" /mobile_element_type="transposon:TIR/CACTA" CDS complement(24871218..24871751) /locus_tag="TCM_014871" /note="paralog of Thecc1EG031880t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /protein_id="EOY22812.1" /db_xref="Phytozome:POPTR_0011s10980.1" /db_xref="TAIR:AT1G53330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MAG8" /translation="MALKECKPDMVTYNVMINGFRKVKDFEAAYRVLEDRAEKWCKPD VISYNMLIGGLCKEGRWSEANDLFEDMPRQGCKPDVVSYRLLFDGLCGGLQFKEAAFV LDEMIFKGYVPHSASIHKFVSRLCQDGNMKLLLMVLNSLAKGNAIDQDTWLMVISKVY QEDKLSIVSEILDALML" gene 24873451..24875444 /locus_tag="TCM_014872" /note="dbxref CacaoGD:Thecc1EG014872" mRNA join(24873451..24873951,24874373..24874604, 24874764..24875444) /locus_tag="TCM_014872" /product="Myb-like HTH transcriptional regulator family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30174.m008784.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005653t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018234001" /note="quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6088t1" CDS join(24873758..24873951,24874373..24874604, 24874764..24875279) /locus_tag="TCM_014872" /note="paralog of Thecc1EG005653t1" /codon_start=1 /product="Myb-like HTH transcriptional regulator family protein, putative" /protein_id="EOY22813.1" /db_xref="Phytozome:GSVIVT01018234001" /db_xref="TAIR:AT3G60460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GP95" /translation="MERQSEGTCIKKGPWTAEEDEVLLNYVKKYGPRGWSSIRSMGLL PRTGKSCRLRWVNKLRPNLKTGCKFSAEEERVVIELQAQFGNKWAKIARYLPGRTDND VKNFWSARRKRLERILLTPTSNSHKNKGKDPVLHEMPMVEVPPSNFIPLEQGSSSHHD QAKRPSFSGNFEEFRMVPLPDLVQPDLPNLETGLPILDIATIQMIPSIEPSANYPVSL QPQLQLDLPSLTQCQDLAPEPNGLNFEGMFKHQEASESDSKPKWFTRFPSTGMNNNAQ IGKKEDRRNPAIPDSFFDEFPSDMFDYLDPLPNSSEW" gene complement(24875521..24880354) /locus_tag="TCM_014873" /note="dbxref CacaoGD:Thecc1EG014873" mRNA complement(join(24875521..24876131,24876639..24876801, 24877288..24877532,24877619..24877696,24877807..24877905, 24878652..24878670,24878782..24878844,24879494..24879756, 24879872..24879922,24880213..24880354)) /locus_tag="TCM_014873" /product="Small G protein family protein / RhoGAP family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24160.2" /inference="similar to AA sequence:ricco:30147.m014262" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6162t3; inference alignment:Newbler:10:TSA:cgbaL_g13270t00001" mRNA complement(join(24875521..24876131,24876639..24876801, 24877288..24877532,24877619..24877696,24877807..24877905, 24878652..24878670,24878782..24878844,24879494..24879756, 24879872..24879934,24880213..24880354)) /locus_tag="TCM_014873" /product="Small G protein family protein / RhoGAP family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24160.2" /inference="similar to AA sequence:Phytozome:POPTR_0004s24160.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6162t1; alternateUTRof:Thecc1EG014873t1; inference alignment:Newbler:10:TSA:cgbaL_g13270t00001" mRNA complement(join(24875611..24876131,24876639..24876801, 24877288..24877532,24877619..24877696,24877807..24877905, 24878652..24878670,24878782..24878844,24879494..24879756, 24879872..24879988,24880213..24880309)) /locus_tag="TCM_014873" /product="Small G protein family protein / RhoGAP family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24160.2" /inference="similar to AA sequence:Phytozome:POPTR_0004s24160.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13270t00001; inference alignment:Newbler:10:TSA:cgbaL_g13270t00001" CDS complement(join(24875989..24876131,24876639..24876801, 24877288..24877532,24877619..24877696,24877807..24877905, 24878652..24878670,24878782..24878844,24879494..24879756, 24879872..24879932)) /locus_tag="TCM_014873" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Small G protein family protein / RhoGAP family protein isoform 1" /protein_id="EOY22814.1" /db_xref="Phytozome:POPTR_0004s24160.1" /db_xref="TAIR:AT5G61530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0M8" /translation="MPSAVSQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAMDAKG NVADVAERVGSMVKSRWAVLRQPATRHAVQESLISAAATTGTFLRKGITGTKDKVAVG KTKVEEVAKKTAQKSKIILTDIERWQKGVASTDVFGVPIEDTVQRQQSNRPIPLILVK CADYLILSGLNSQYLFKAEGDKKVIQQLVSTYNQDFNASIPEGVSAIDVAALAKYYIA SLPEPLTTFELYNEIKGARSSIHAMRNVLKKLPSVNYMTLEFVTALLLCVSQKSVLNN MDARSLAMEMAPVIMWEKGQKPESYRKYWSRPPKSPSKGSMDSTPAYTAWDMLADDGE DMDASSHIPLDDGMPVDFGAIEVIQCLIEQHNPIFTDANETVW" CDS complement(join(24875989..24876131,24876639..24876801, 24877288..24877532,24877619..24877696,24877807..24877905, 24878652..24878670,24878782..24878844,24879494..24879756, 24879872..24879932)) /locus_tag="TCM_014873" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Small G protein family protein / RhoGAP family protein isoform 1" /protein_id="EOY22815.1" /db_xref="Phytozome:POPTR_0004s24160.1" /db_xref="TAIR:AT5G61530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0M8" /translation="MPSAVSQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAMDAKG NVADVAERVGSMVKSRWAVLRQPATRHAVQESLISAAATTGTFLRKGITGTKDKVAVG KTKVEEVAKKTAQKSKIILTDIERWQKGVASTDVFGVPIEDTVQRQQSNRPIPLILVK CADYLILSGLNSQYLFKAEGDKKVIQQLVSTYNQDFNASIPEGVSAIDVAALAKYYIA SLPEPLTTFELYNEIKGARSSIHAMRNVLKKLPSVNYMTLEFVTALLLCVSQKSVLNN MDARSLAMEMAPVIMWEKGQKPESYRKYWSRPPKSPSKGSMDSTPAYTAWDMLADDGE DMDASSHIPLDDGMPVDFGAIEVIQCLIEQHNPIFTDANETVW" CDS complement(join(24875989..24876131,24876639..24876801, 24877288..24877532,24877619..24877696,24877807..24877905, 24878652..24878670,24878782..24878844,24879494..24879700)) /locus_tag="TCM_014873" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014262" /codon_start=1 /product="Small G protein family protein / RhoGAP family protein isoform 3" /protein_id="EOY22816.1" /db_xref="TAIR:AT5G61530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0M8" /translation="MDAKGNVADVAERVGSMVKSRWAVLRQPATRHAVQESLISAAAT TGTFLRKGITGTKDKVAVGKTKVEEVAKKTAQKSKIILTDIERWQKGVASTDVFGVPI EDTVQRQQSNRPIPLILVKCADYLILSGLNSQYLFKAEGDKKVIQQLVSTYNQDFNAS IPEGVSAIDVAALAKYYIASLPEPLTTFELYNEIKGARSSIHAMRNVLKKLPSVNYMT LEFVTALLLCVSQKSVLNNMDARSLAMEMAPVIMWEKGQKPESYRKYWSRPPKSPSKG SMDSTPAYTAWDMLADDGEDMDASSHIPLDDGMPVDFGAIEVIQCLIEQHNPIFTDAN ETVW" mobile_element 24877222..24877282 /note="source:scaffold_8_CACTA_0850 10825 10882" /mobile_element_type="transposon:TIR/CACTA" misc_feature complement(join(24877877..24878670,24878782..24878792)) /locus_tag="TCM_014873" /note="Gene fragment of Thecc1EG014873t1; dbxref gnl|CacaoGD|Thecc1EG014873t1; quality class is mediumpartial-partof is thecc1eg014873t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc544t4; dbxref CacaoGD:Thecc1EG014874t1" gene complement(24881921..24884280) /locus_tag="TCM_014875" /note="dbxref CacaoGD:Thecc1EG014875" mRNA complement(join(24881921..24882702,24882779..24883273, 24883440..24883676,24884007..24884280)) /locus_tag="TCM_014875" /product="Major facilitator superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014261" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014877t1" /inference="similar to AA sequence:ricco:30147.m014261" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage" CDS complement(join(24882206..24882702,24882779..24883273, 24883440..24883676,24884007..24884136)) /locus_tag="TCM_014875" /note="dbxref ricco:30147.m014261; paralog of Thecc1EG014877t1" /codon_start=1 /product="Major facilitator superfamily protein, putative" /protein_id="EOY22817.1" /db_xref="TAIR:AT5G61520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0PIJ6" /translation="MAAGLSIISEGGKYNGGMTMLVVMSCFMAAIGGVLFGYDLGISG GVTSMEPFLKAFFSQVYSKMEQDTEISNYCKFDSQLLTIFTSSLYIADLFASSVTRAF GRKPSILVGGASFLAGSALGVPLYISEMALPRHRGAMNIGFEVGVGFGVLVANLVNFG TEKIKGGWGWRISLAVAAVPAAIVTLSTLFLPETPNSLIQQSNNHQKAKHVLQRVRGT TDVQAELDDLIKASSNSKTMKHPFKKIVQKQYRPQFVMSIAIPFFQQVTGINVITFYA PILFRTTGLGKNKFGRRALFMVGGALMFVSQIVVGGIMTAMLGDQGALSQGCAYLVLI LICIYVAGFSLSWGPLGWLVPSEIYPLEIRSAGQSITVAIGFLLCFLVGQTFLAMLCR MKSGILFFFGGWVAVMTAFVHFLLPETMNVPFEQMEKVWREHWFWRRFVKEEEGAKMQ EA" gene complement(24885394..24888366) /locus_tag="TCM_014876" /note="dbxref CacaoGD:Thecc1EG014876" mRNA complement(join(24885394..24886791,24887251..24887573, 24887767..24888366)) /locus_tag="TCM_014876" /product="Major facilitator superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014261.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014877t1" /inference="similar to AA sequence:ricco:30147.m014261" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6112t1" CDS complement(join(24885721..24886791,24887251..24887573, 24887767..24887896)) /locus_tag="TCM_014876" /note="dbxref ricco:30147.m014261; paralog of Thecc1EG014877t1" /codon_start=1 /product="Major facilitator superfamily protein, putative" /protein_id="EOY22818.1" /db_xref="TAIR:AT5G61520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0PIJ6" /translation="MAVASAKTGEGGQYNGRITLLVVLSCVMAASGGLIFGYDLGVSG GVTSMDPFLKKFFPNVYRRMKANTKISNYCKFDSQLLTLFTSSLYIAGLIASFFASPV TRAFGRKASMLVAGVAVLAGSALGGAASNVYMLVFGRVFLGIGLGFANQSIPLYISEM ALPKQRGAMNIIFECGIGFGVLIANIINYGTEKIEGGWGWRISLSLAAVPASILTLGA LILPDTPNSLIQTTNDHEKAKRVLQRIRGTINVQAELDDLIQASSISKTINNPFKKII QRKYRPQLVMAAAIPFFAQMTGINVITFYAPILFRTIGLHESSSLLSAVVIRLVSTSC IFISMFAVDKHGRRVLFMIGGILMLATQITIGGLMTALLGDHGGLSKASGYLVLVLVC IYVSGFGLSWGPLGWLVPSEIYPLEIRSAGQSITVAVSFFFCFLVGQTFLAMLCHMKS GIFFFFGGWVAVMTTFVYLLLPETKNVPIEKMEKVWREHWLWKRIVGDQVDEKAFIS" gene complement(24889063..24892684) /locus_tag="TCM_014877" /note="dbxref CacaoGD:Thecc1EG014877" mRNA complement(join(24889063..24890438,24890539..24890861, 24891305..24891966,24892246..24892684)) /locus_tag="TCM_014877" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24170.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014880t1" /inference="similar to AA sequence:ricco:30147.m014261" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc970t1" CDS complement(join(24889359..24890438,24890539..24890861, 24891305..24891434)) /locus_tag="TCM_014877" /note="dbxref ricco:30147.m014261; paralog of Thecc1EG014880t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY22819.1" /db_xref="TAIR:AT5G61520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7R8" /translation="MAAGLAITSEGGRYNGRMTLLVLLSCMMAATGGIIFGYDLGISG GVTSMEPFLKKFFPKVNTKMKEDTKISNYCKFDSQLLTSFTSSLYIAGLISSFFASPV TRAFGRKPSILIGGAAFLAGSALGGAAFNVYMLIFGRVLLGVGVGFANQSVPLYISEM ALPRHRGAMNIGFQCGVGIGVLSANIINFGTEKIEGGWGWRISLALAALPASFLTIGA LLLPETPNSLIQNSNNHQKAKSVLQRIRGTADVQAELDDLIKASSISKTTNHPFQKII QRKYRPQFVMAIALPFFQQVTGINVITFYAPILFRTIGQGESASLMSAVVTGLVGTTA TFVSMLAVDKVGRRALLMIGGIQMLVTQIIIGGIMAALLGDHGGLSKGYAYLVLALIC VYVAGFAWSWGPLGWLVPSEIFPLEIRSAGQSITVAVGFLFTFIIAQTFLAMLCHFKS GIFFFFGGWVVLMTAFVYFFLPETKNVPIEQMEKVWREHWFWKRIVGEVDEKVYTQGA RC" gene complement(24892853..24894914) /locus_tag="TCM_014878" /note="dbxref CacaoGD:Thecc1EG014878" mRNA complement(join(24892853..24893868,24893950..24894039, 24894141..24894228,24894329..24894370,24894815..24894914)) /locus_tag="TCM_014878" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage" gene 24892992..24894369 /locus_tag="TCM_014879" /note="dbxref CacaoGD:Thecc1EG014879" mRNA 24892992..24894369 /locus_tag="TCM_014879" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc912t5" CDS 24893291..24893524 /locus_tag="TCM_014879" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22821.1" /translation="MTALAILPLRQLQCHFLSQFQLLLPELYPPLKSEQSSFPHKHLF CFASESLVPSDAFLKASSTTGMISLIMLSSLWG" CDS complement(join(24893597..24893868,24893950..24894039, 24894141..24894228,24894329..24894370,24894815..24894886)) /locus_tag="TCM_014878" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22820.1" /translation="MIAPTCQEASGAVEQNDATTNDHKEDKGIPKEAGSTKQEERADK PKNVDTIVVEPDDLGTEKVVNFEYHDKSKDLPGLSLEHLSIDGTASLQNKKETDHNKD SKDCPGASHEDLPIYAAVPFQNKKEIGIGLSLESTEPSENLYVYEKEVETMSDHKKDS RDAPGSLHEDLSNDGAVYLQNHKETIF" gene complement(24894980..24900604) /locus_tag="TCM_014880" /note="dbxref CacaoGD:Thecc1EG014880" mRNA complement(join(24894980..24895003,24895190..24895318, 24895482..24895704,24895846..24897398,24897505..24897827, 24899337..24899512,24900514..24900604)) /locus_tag="TCM_014880" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014261.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014877t1" /inference="similar to AA sequence:ricco:30147.m014261" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6107t2" CDS complement(join(24896328..24897398,24897505..24897827, 24899337..24899466)) /locus_tag="TCM_014880" /note="dbxref ricco:30147.m014261; paralog of Thecc1EG014877t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY22822.1" /db_xref="TAIR:AT5G61520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7R8" /translation="MAVALAITDEGGQYNGRMTLFVVLSCMMAAMGGVIFGYDIGISG GVTSMEPFLKKFFPDVYRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLFATFLASSV TKAFGRKPSILAGGAAFLAGSALGGAALNVYMLIFGRILLGIGVGFANQSVPLYLSEM APPRYRGAINNGFQFSIGIGALVANLINFGTEKIEGGWGWRISLAMAAVPASILTLGA IFLPETPNSLIQNSSDHDKAKTLLQRIRGTSDVQAELDDLIKASLVAKSINHPIKKII QRKYRPQLVMAIAIPFFQQVTGINVIAFYAPILFRTIGIGESASLLSSVVTGVVGAGS TFISMLIVDKFGRRALFMVGGIQMFVSQMLVGGIMAAQLGDHGTVSKGYAYLVIFLIC IYVAGFGWSWGPLGWLVPSEIYQLEIRSAGQSITVAVSFVFTFVVAQTFLSMLCHFKA GIFFFFGGWVVVMTAFVYFLLPETKNVPIEQMEKVWKEHWFWKRILGEEDDEIKIHH" gene 24902674..24904797 /locus_tag="TCM_014881" /note="dbxref CacaoGD:Thecc1EG014881" mRNA join(24902674..24902954,24903064..24903176, 24903802..24903995,24904132..24904797) /locus_tag="TCM_014881" /product="Expansin-B2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400032846" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005605t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017505001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2771t2_C2" CDS join(24902774..24902954,24903064..24903176, 24903802..24903995,24904132..24904465) /locus_tag="TCM_014881" /note="paralog of Thecc1EG005605t1" /codon_start=1 /product="Expansin-B2" /protein_id="EOY22823.1" /db_xref="Phytozome:GSVIVT01017505001" /db_xref="TAIR:AT1G65680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHY6" /translation="MAPLSYICLPLAYIIVLVFFCHFELCVSFKSKQFNLSTIEIHWS SAGATWYGSPDGAGSDGGSCGYGNAVSLPPFSSMVTGIGPSLYKSGKECGACYQVKCT KHPFCSGKPVRVVITDFCPGGLCASDSAHFDLSGTAFGAMAIAGKEDKLRDAGVLEIR YARVACDYSGKTIVFHVDMGSNSNYFAVLVEFEEGDGDLAGVYLKETSSGSGDWRAMQ QSWGAVWKLDAGSELHPPFSIRLKSQLSGQTLVAQNVIPQGWKPGATYRSLVNYL" gene 24905627..24909145 /locus_tag="TCM_014882" /note="dbxref CacaoGD:Thecc1EG014882" mRNA join(24905627..24905889,24906306..24906447, 24907291..24907517,24907691..24907948,24908314..24909145) /locus_tag="TCM_014882" /product="GroES-like zinc-binding alcohol dehydrogenase family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400037440" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400037440" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6164t1" CDS join(24905632..24905889,24906306..24906447, 24907291..24907517,24907691..24907948,24908314..24908619) /locus_tag="TCM_014882" /codon_start=1 /product="GroES-like zinc-binding alcohol dehydrogenase family protein" /protein_id="EOY22824.1" /db_xref="Phytozome:PGSC0003DMP400037440" /db_xref="TAIR:AT5G61510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A1L4Y4" /translation="MGLLKLGFQNQRLHLLHFVPESFSVSTSKFWVQNLTNNKGVKHS ALSSTLRSKLIIAKALSTEAEALSQPKKMVKAIGVHELGGPEVLKYEDVELGDPKEGE IRIKNKAIGLNFIDIYFRKGVYKAATMPFTPGMEAVGEVTAVGPGLTGRKVGDVVAYA GNPMGSYAEEQILPADKVVPVPPSVDPIIAASIMLKGMTAQFLVRRCFKVESGHTVLV HAAAGGVGSLLCQWANALGATVIGTVSTEEKAAQAKEDGCHHVIIYKEEDFVACVNEI TSGKGVEVVYDSVGKDTFQGSLACLKPRGYMVSFGQSSGSPDPVPLSALAAKSLFLTR PSMMQYTSTRDELLETAGEVFANVASGILRVRVNHKYPLSQAAQAHADLENRRTSGSV LLIP" mobile_element complement(24908898..24909222) /note="source:INTACT1F_F64_scaffold_1-int 1 331" /mobile_element_type="retrotransposon:LTR/Copia" gene 24910311..24911713 /locus_tag="TCM_014883" /note="dbxref CacaoGD:Thecc1EG014883" mRNA join(24910311..24910929,24911040..24911314, 24911424..24911713) /locus_tag="TCM_014883" /product="GRAM domain-containing protein / ABA-responsive protein-related, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400018009.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007675t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s06650.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3668t2" CDS join(24910854..24910929,24911040..24911314, 24911424..24911648) /locus_tag="TCM_014883" /note="paralog of Thecc1EG007675t1" /codon_start=1 /product="GRAM domain-containing protein / ABA-responsive protein-related, putative" /protein_id="EOY22825.1" /db_xref="Phytozome:POPTR_0004s06650.1" /db_xref="TAIR:AT5G08350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NEP8" /translation="MDFKMANTKNLRKESSNLASRLRDHVKMGSKLSETVKGKLRLGT KIIQEGGRENIFKQMFGMTEGEEMLKASQCYLSTTAGPIAGLLFISTEKVAFISDSLI TVSCATGQSIRIPYKVMIPIRKIKKANRSENVNKPAEKYLEVVTKDCFEFWFMGFLRY EQALDSLQKALWLVDTQLTPKCRRRLFLKSA" mobile_element 24912492..24912949 /note="source:scaffold_1_CACTA_0008 1005 1485" /mobile_element_type="transposon:TIR/CACTA" gene 24914049..24918197 /locus_tag="TCM_014884" /note="dbxref CacaoGD:Thecc1EG014884" mRNA join(24914049..24914289,24914749..24914857, 24915020..24915120,24915240..24915973,24916059..24916442, 24916585..24916699,24916771..24916854,24916949..24917710, 24917799..24918197) /locus_tag="TCM_014884" /product="SWITCH1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10600.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10600.1" /note="quality class is strong-expertchoice, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc495t1" CDS join(24914233..24914289,24914749..24914857, 24915020..24915120,24915240..24915973,24916059..24916442, 24916585..24916699,24916771..24916854,24916949..24917710, 24917799..24917969) /locus_tag="TCM_014884" /codon_start=1 /product="SWITCH1, putative" /protein_id="EOY22826.1" /db_xref="Phytozome:POPTR_0003s10600.1" /db_xref="TAIR:AT5G51330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H063" /translation="MEKRWHKLDAEAVAATNLTEMMYLKRQAGQTSEDAAMRLCLGRQ LLPPSSPDSNLDAAAHIKVGSYYEIDHSKLPHKTPDQLKLVRVIMVSKKSKCSVSLRY PSVCSLRAYFSERNRRKLEAKMLPSLDEQYAMGSELAGDVLYRRIPPHEIATQRNQWS FWVVVFPREQETGKNPSSIPSPSPSIITSYVNVVSKKGLCWSVLKSTGMVRWGRRRQV RFLGRHVEERRELNLSGRVKGEEEEKRNEVDEEKEEEEEDDDDEGEEEEKEIRVSDEE NSETDKRKSCKRKRHGASHRTQMPKRAKHEKQNQQITLYKPGKRREVKNSIERWSVQR YNLAEENMLKIMKEKGAIFGNPILRPALRAEARKLIGDTGLLDHLLKHMAGKVAPGGE ERFMRRHNSDGAMEYWLESADLMDIRKAAGVQDPYWTPPPGWKLGDNPTLDPVCAREL KELREEIARLKKDMLENKKPEEDLVLVTTPNYSVASQNLVHDTTMLFPMKEKYVDLMN RKAKLEEQLAEIAQSLCGLEGEMGKLKSIVEDLNKPESAETTLLIMRSTTPPLSTGRE TKEMEKSNKAVLVISDEEEKDSSAAGKTSAVPRTTRNTVTTEDKAAKIERLKSGFRIC KPQGTFLWPNMALSGQVVVPLDDQLAIPTPPSVCSSTTTASRLVPSPQEHRPQPTSTV KPLAERRSTVAAVNFSPTAVSRHPPPLPLEATTAQYANSSITPDTTSITTKTTFINLN EVPGNPHDHGFCGSHSQSQTSPSPLTYQRRHLHLTTSTSMPRLMPGKRENEMSQWDGG NHQQQKGCSSPSYHCVSVGAGTWLALSTPSSSMDNNSTRV" mobile_element complement(24919364..24920340) /note="source:CACAO_MITE_S250_scaffold_10 1 944" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(24920233..24920354) /note="source:scaffold_2_CACTA_0281 5234 5358" /mobile_element_type="transposon:TIR/CACTA" gene complement(24920291..24925807) /locus_tag="TCM_014885" /note="dbxref CacaoGD:Thecc1EG014885" mRNA complement(join(24920291..24920940,24921476..24921544, 24921643..24921793,24922186..24922274,24923101..24923234, 24923563..24923650,24923996..24924037,24924139..24924377, 24924714..24924821,24924917..24925059,24925334..24925807)) /locus_tag="TCM_014885" /product="Biotin F isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g16260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014887t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017497001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b014377t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g01412t00002" mRNA complement(join(24920291..24920940,24921476..24921544, 24921643..24921793,24922186..24922274,24923101..24923234, 24923563..24923650,24923996..24924037,24924139..24924377, 24924714..24924821,24924917..24925059,24925304..24925807)) /locus_tag="TCM_014885" /product="Biotin F isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g16260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014887t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017497001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01412t00002" mRNA complement(join(24920587..24920940,24921473..24921544, 24921643..24921793,24922186..24922274,24923101..24923234, 24923563..24923650,24923996..24924037,24924139..24924377, 24924714..24924821,24924917..24925059,24925304..24925734)) /locus_tag="TCM_014885" /product="Biotin F isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g16260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014887t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017497001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6181t1; inference alignment:Newbler:10:TSA:cgbaP2_g01412t00002" mRNA complement(join(24920695..24920940,24921476..24921540, 24921643..24921793,24922186..24922274,24923101..24923234, 24923563..24923650,24923996..24924037,24924139..24924377, 24924714..24924821,24924917..24925059,24925304..24925734)) /locus_tag="TCM_014885" /product="Biotin F isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g16260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014887t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017497001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc223t2; inference alignment:Newbler:10:TSA:cgbaP2_g01412t00002" mRNA complement(join(24920695..24920940,24921476..24921544, 24921643..24921793,24922186..24922415,24923101..24923234, 24923563..24923650,24923996..24924037,24924139..24924377, 24924714..24924821,24924917..24925059,24925304..24925734)) /locus_tag="TCM_014885" /product="Biotin F isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g16260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014887t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017497001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc223t7; inference alignment:Newbler:10:TSA:cgbaP2_g01412t00002" CDS complement(join(24920811..24920940,24921476..24921544, 24921643..24921793,24922186..24922274,24923101..24923234, 24923563..24923650,24923996..24924037,24924139..24924377, 24924714..24924821,24924917..24925059,24925334..24925553)) /locus_tag="TCM_014885" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG014887t1" /codon_start=1 /product="Biotin F isoform 5" /protein_id="EOY22831.1" /db_xref="Phytozome:GSVIVT01017497001" /db_xref="TAIR:AT5G04620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2QKD2" /translation="MEANSLWEKWVEQAVSKLESLKLLRSLRPLYLSSVRQEVANVGI SNEEEYELFDAVQPCDRSSIEVSISESTYRDEIVLREGLADDKFGTCQQQFKRLILFS GNDYLGLSSHPAVRKAAAKAVQEYGMGPRGSALICGYTYHHRLLESSLASLKKKEDCL LCPTGFSANMAFMVALGNIATLLAAGNKPSKDEKIAIFSDELNHASIIDGIRLAERQR SVEFFVYKHCDMSHLNALLSSCKMKKKVVVTDSLFSMDGDFAPMVELVELRKKHSFLL VIDDAHGTFVCGKSGGGVAEEFDCERDVDICIGTLSKAAGCQGGFIACSKKWKQLIQS RGRSFIFSTAAPVPLAAAAHAAVIVAKREMWRRRALWDRVQDFRALTGIPISSPIISL IVGSEEKALKASRQLLKSSFHVTAIRPPTVPPNSCRLRIALSAAHTTDDVKKLTAALS SYINFRDIGSNYSLNIYSKL" CDS complement(join(24920811..24920940,24921476..24921544, 24921643..24921793,24922186..24922274,24923101..24923234, 24923563..24923650,24923996..24924037,24924139..24924377, 24924714..24924821,24924917..24925059,24925304..24925553)) /locus_tag="TCM_014885" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014887t1" /codon_start=1 /product="Biotin F isoform 1" /protein_id="EOY22827.1" /db_xref="Phytozome:GSVIVT01017497001" /db_xref="TAIR:AT5G04620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2QKD2" /translation="MEANSLWEKWVEQAVSKLESLKLLRSLRPLYLSSVRQEVANVGI SNEEEYELFDAVQPCDRSSIEVSISESTYRKWLLEVPSSGDEIVLREGLADDKFGTCQ QQFKRLILFSGNDYLGLSSHPAVRKAAAKAVQEYGMGPRGSALICGYTYHHRLLESSL ASLKKKEDCLLCPTGFSANMAFMVALGNIATLLAAGNKPSKDEKIAIFSDELNHASII DGIRLAERQRSVEFFVYKHCDMSHLNALLSSCKMKKKVVVTDSLFSMDGDFAPMVELV ELRKKHSFLLVIDDAHGTFVCGKSGGGVAEEFDCERDVDICIGTLSKAAGCQGGFIAC SKKWKQLIQSRGRSFIFSTAAPVPLAAAAHAAVIVAKREMWRRRALWDRVQDFRALTG IPISSPIISLIVGSEEKALKASRQLLKSSFHVTAIRPPTVPPNSCRLRIALSAAHTTD DVKKLTAALSSYINFRDIGSNYSLNIYSKL" CDS complement(join(24920811..24920940,24921473..24921544, 24921643..24921793,24922186..24922274,24923101..24923234, 24923563..24923650,24923996..24924037,24924139..24924377, 24924714..24924821,24924917..24925059,24925304..24925553)) /locus_tag="TCM_014885" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG014887t1" /codon_start=1 /product="Biotin F isoform 4" /protein_id="EOY22830.1" /db_xref="Phytozome:GSVIVT01017497001" /db_xref="TAIR:AT5G04620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2QKD2" /translation="MEANSLWEKWVEQAVSKLESLKLLRSLRPLYLSSVRQEVANVGI SNEEEYELFDAVQPCDRSSIEVSISESTYRKWLLEVPSSGDEIVLREGLADDKFGTCQ QQFKRLILFSGNDYLGLSSHPAVRKAAAKAVQEYGMGPRGSALICGYTYHHRLLESSL ASLKKKEDCLLCPTGFSANMAFMVALGNIATLLAAGNKPSKDEKIAIFSDELNHASII DGIRLAERQRSVEFFVYKHCDMSHLNALLSSCKMKKKVVVTDSLFSMDGDFAPMVELV ELRKKHSFLLVIDDAHGTFVCGKSGGGVAEEFDCERDVDICIGTLSKAAGCQGGFIAC SKKWKQLIQSRGRSFIFSTAAPVPLAAAAHAAVIVAKREMWRRRALWDRVQDFRALTG IPISSPIISLIVGSEEKALKASRQLLKSSFHVTAIRPPTVPPNSCRLLRIALSAAHTT DDVKKLTAALSSYINFRDIGSNYSLNIYSKL" CDS complement(join(24921534..24921540,24921643..24921793, 24922186..24922274,24923101..24923234,24923563..24923650, 24923996..24924037,24924139..24924377,24924714..24924821, 24924917..24925059,24925304..24925553)) /locus_tag="TCM_014885" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG014887t1" /codon_start=1 /product="Biotin F isoform 3" /protein_id="EOY22829.1" /db_xref="Phytozome:GSVIVT01017497001" /db_xref="TAIR:AT5G04620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2QKD2" /translation="MEANSLWEKWVEQAVSKLESLKLLRSLRPLYLSSVRQEVANVGI SNEEEYELFDAVQPCDRSSIEVSISESTYRKWLLEVPSSGDEIVLREGLADDKFGTCQ QQFKRLILFSGNDYLGLSSHPAVRKAAAKAVQEYGMGPRGSALICGYTYHHRLLESSL ASLKKKEDCLLCPTGFSANMAFMVALGNIATLLAAGNKPSKDEKIAIFSDELNHASII DGIRLAERQRSVEFFVYKHCDMSHLNALLSSCKMKKKVVVTDSLFSMDGDFAPMVELV ELRKKHSFLLVIDDAHGTFVCGKSGGGVAEEFDCERDVDICIGTLSKAAGCQGGFIAC SKKWKQLIQSRGRSFIFSTAAPVPLAAAAHAAVIVAKREMWRRRALWDRVQDFRALTG IPISSPIISLIVGSEEKALKASSC" CDS complement(join(24922364..24922415,24923101..24923234, 24923563..24923650,24923996..24924037,24924139..24924377, 24924714..24924821,24924917..24925059,24925304..24925553)) /locus_tag="TCM_014885" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014887t1" /codon_start=1 /product="Biotin F isoform 2" /protein_id="EOY22828.1" /db_xref="Phytozome:GSVIVT01017497001" /db_xref="TAIR:AT5G04620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2QKD2" /translation="MEANSLWEKWVEQAVSKLESLKLLRSLRPLYLSSVRQEVANVGI SNEEEYELFDAVQPCDRSSIEVSISESTYRKWLLEVPSSGDEIVLREGLADDKFGTCQ QQFKRLILFSGNDYLGLSSHPAVRKAAAKAVQEYGMGPRGSALICGYTYHHRLLESSL ASLKKKEDCLLCPTGFSANMAFMVALGNIATLLAAGNKPSKDEKIAIFSDELNHASII DGIRLAERQRSVEFFVYKHCDMSHLNALLSSCKMKKKVVVTDSLFSMDGDFAPMVELV ELRKKHSFLLVIDDAHGTFVCGKSGGGVAEEFDCERDVDICIGTLSKAAGCQGGFIAC RFLHISLAYTNSPKILV" mobile_element 24925818..24925916 /note="source:scaffold_1_CACTA_0005 6268 6355" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24925821..24925946) /note="source:scaffold_4_CACTA_0511 7055 7187" /mobile_element_type="transposon:TIR/CACTA" gene complement(24927034..24930806) /locus_tag="TCM_014886" /note="dbxref CacaoGD:Thecc1EG014886" mRNA complement(join(24927034..24927307,24927577..24927665, 24927898..24928031,24928197..24928284,24928401..24928442, 24928685..24928932,24930102..24930247,24930362..24930806)) /locus_tag="TCM_014886" /product="Biotin F, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014887t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017497001" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(24927246..24927307,24927577..24927665, 24927898..24928031,24928197..24928284,24928401..24928442, 24928685..24928932,24930102..24930247,24930362..24930584)) /locus_tag="TCM_014886" /note="paralog of Thecc1EG014887t1" /codon_start=1 /product="Biotin F, putative" /protein_id="EOY22832.1" /db_xref="Phytozome:GSVIVT01017497001" /db_xref="TAIR:AT5G04620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2QKD2" /translation="MGKSSWDLWIEEALAKLESRKMFMPLRPMHLPTLKQQQQEAQTD EYETFHGIQPWYRLSIQISLPDSFFQRLLDGTELNCKNGRDDGKLSPNQQQQWKKLIL FAGNDFLGLCRHPSIAKATAKKFQVETDKGGAFGRMLQACLLCPTGFSANLAVMVAIG SLAPLLRAGRGPTKEEKIAIFSDSLNHASIVDGIKLAERYGCVKFITNCNMKRKVVVT DSLFSMDGDFAPMIELVQLRRKHGFLLVVDDAHGTFFWGQNGGGVPEEFNCENDIDIC IGTLSKAAASLGGFIACSQIWKQFIQSRGRSFMFSTAPPVPLTAASYASIVVARNEQW RRREIRKRM" mobile_element complement(24929449..24929672) /note="source:CACAO_on_E69_scaffold_9 24 256" /mobile_element_type="transposon:TIR/hAT" gene complement(24930723..24936084) /locus_tag="TCM_014887" /note="dbxref CacaoGD:Thecc1EG014887" mRNA complement(join(24930723..24931015,24932268..24932708, 24932878..24932946,24933033..24933183,24933334..24933422, 24933561..24933694,24933921..24934008,24934149..24934190, 24934296..24934534,24934904..24935011,24935134..24935279, 24935733..24936084)) /locus_tag="TCM_014887" /product="Biotin F" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017497001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014885t1" /inference="similar to AA sequence:Phytozome:Glyma06g47430.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05350t00001" CDS complement(join(24932582..24932708,24932878..24932946, 24933033..24933183,24933334..24933422,24933561..24933694, 24933921..24934008,24934149..24934190,24934296..24934534, 24934904..24935011,24935134..24935279,24935733..24935952)) /locus_tag="TCM_014887" /note="paralog of Thecc1EG014885t1" /codon_start=1 /product="Biotin F" /protein_id="EOY22833.1" /db_xref="Phytozome:Glyma06g47430.1" /db_xref="TAIR:AT5G04620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2QKD2" /translation="MEQSSWDFWVEEALLKLESLKLLRPIRPIQLSKKQATEKKDDEE YEVFNELQPWDRSTVEVSISESFFQQWLRGDNEVLRRDDLPVDKDNANQQKLKKLVLF CGNDFLGLSSHPTIAKATAKAATEHGMGPRGSALICGYTNYHRSLESSLADLLKKEDC LLCPTGYAANTALMVAIGSIAPLLAAGKKPSKEEKIAIFSDALNHLSIIEGIYLAGRR GGVELFVYRHCDMSHLNELLTSCKMKKKVVVTDSLFSMDGDFAPMLELAELRKKHGFL LVIDDAHATFVCGENGGGVAEKFNCETDVDICTGSLSKAAATLGGFIACSKKWKQFIQ SRGRAFIFSTTAPVPFTSALHAAVIVASKETWRRKAIQERMREFHALTGIPITSHIIS IVVRTEEKAVQASRYMVKSGFYVTPIRPPGVSPDSCRLRVTLTAAHTTDDIKRLAAAL SNCINFQDISSRHSNLLAKL" gene 24937369..24939980 /locus_tag="TCM_014889" /note="dbxref CacaoGD:Thecc1EG014889" mRNA join(24937369..24937930,24938582..24938761, 24939356..24939980) /locus_tag="TCM_014889" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is paralog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS join(24938611..24938761,24939356..24939609) /locus_tag="TCM_014889" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22834.1" /translation="MRYLIGNDTYINFWDDKWIEGITLRIAFPRIFAFAINKSGKVCE FGLKVNGWDLLKILDIIRTRVAWWAKYKWPNENPTIPDIFSSPLTNLAADRRKVPKTL VKWELPASKMVQVQHGWSSTRGCMGYLGIGGY" gene 24940269..24943124 /locus_tag="TCM_014890" /note="dbxref CacaoGD:Thecc1EG014890" mRNA join(24940269..24940754,24941791..24942154, 24942445..24943124) /locus_tag="TCM_014890" /product="2-oxoglutarate-dependent dioxygenase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026928001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016262t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026928001" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6147t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6145t1" CDS join(24941799..24942154,24942445..24943039) /locus_tag="TCM_014890" /note="paralog of Thecc1EG016262t1" /codon_start=1 /product="2-oxoglutarate-dependent dioxygenase" /protein_id="EOY22835.1" /db_xref="Phytozome:GSVIVT01026928001" /db_xref="TAIR:AT4G23340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H064" /translation="MPETKTSVELPVFDLSQPLSPSSLSSLSLACREWGFFRITNHGV SKDLYRKLYSLSNHLFSLPDESKLKLGPTSSLKTYTPHFIASPFFESLRVSGPDFFAS AQSSVDVLFEQPNSEFSEVLKEYGSLMTKLSKEIVEAILKSLGEELEKKSFESEFGNC HGYLRINNYTPPKSMKEEEVDGLGMHTDMSCVTIVYQDEIGGLQVRSKEGKWMDINPC EDTLVVNIGDLMHAWSNGKLSSSEHRVVLKRIVNRFSLAFFWCFEDEKVIFAPNEVVG EDNLRIYKPFVCADYLKFRQSSEKGRFDKVGFTVKDFAGT" gene 24944339..24945841 /locus_tag="TCM_014891" /note="dbxref CacaoGD:Thecc1EG014891" mRNA join(24944339..24944481,24944609..24945213, 24945296..24945841) /locus_tag="TCM_014891" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(24944629..24945213,24945296..24945739) /locus_tag="TCM_014891" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22836.1" /translation="MGKQRSKQLKKTKGVNKTSFDELADDLKEDVFRRLDIKDRGKFK CVSKEWRRLITAACSPICSGFLYKNANMNRPLAEVKHLSYQPWSGDPLSGKLRFHASF AFEESLPFKLSSGLQESCNGLLLLCHCHKSEVGSIVKESEVGKYRGRLRMYSYYVINP LTRQYFVICKPKPNSALYNYAALAYHPAESSHFKIEAREPWVVQEIEIPGTAKINEAA CIGLSNDHIKFAISDGSSLKIWELNHQFVDSRDYNRWSLKFSCRSQDINRSFKYPTPL TFHPNLDAIVLCLVDYGKFASFGCLHYSEEMAKAMPCLMQLRWRNNHKFVFPLFQCEA PFAGDTAK" mobile_element 24946372..24946791 /note="source:CACAO_hAT_E2876_scaffold_6 1 425" /mobile_element_type="transposon:TIR/hAT" mobile_element 24946894..24947181 /note="source:CACAO_Again_on_S_E60_scaffold_2 829 1116" /mobile_element_type="transposon:TIR/hAT" mobile_element 24951573..24952307 /note="source:CACAO_on_E373_scaffold_1 1 726" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(24952654..24952761) /note="source:scaffold_10_CACTA_0141 3530 3637" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24954732..24954743) /note="source:scaffold_1_CACTA_0006 8449 8515" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24954744..24954799) /note="source:CACAO_on_E1_scaffold_1 91 146" /mobile_element_type="transposon:TIR/hAT" mobile_element 24954749..24954819 /note="source:CACAO_M_S_E7994_F98_scaffold_2 2033 2102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24956947..24957061 /note="source:CACAO_Mutator_E1376_scaffold_6 1909 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element 24957421..24957502 /note="source:CACAO_on_E192_scaffold_8 11 95" /mobile_element_type="transposon:TIR/hAT" gene 24957587..24960882 /locus_tag="TCM_014892" /note="dbxref CacaoGD:Thecc1EG014892" mRNA join(24957587..24957797,24959083..24959390, 24960035..24960882) /locus_tag="TCM_014892" /product="Ethylene response factor 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400000728.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044478t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15550.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6149t1" CDS join(24959245..24959390,24960035..24960752) /locus_tag="TCM_014892" /note="paralog of Thecc1EG044478t1" /codon_start=1 /product="Ethylene response factor 2" /protein_id="EOY22837.1" /db_xref="Phytozome:POPTR_0001s15550.1" /db_xref="TAIR:AT2G44940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8VD29" /translation="MYRTSEGRPDFNIAKFQNSDESPTSAGANSATLEYKGHGDAKRF FFVTPLCSPSDSCSINTFAFASSLAFMDLKYIKQSFRKKRSIREKRSTEANERGEKSF KKGKAYRHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVASMAIK GNSAYLNFPESAHELPRPASSARRDIQEAANKAAYAMVDQHNAMIEVKTVPSQDEMPA PQSPSSTTMSCETQGSPSSQSVDSDSMWFDLPDLSLEANSSHRFGYTSWWQQAGIDIE FKFEETMGWDK" mobile_element 24961126..24961665 /note="source:CACAO_MITE_S248_scaffold_10 1 588" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(24966216..24967046) /note="source:scaffold_3_CACTA_0378 1629 2447" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24967568..24967709) /note="source:scaffold_9_CACTA_0934 14615 14756" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24967700..24968346 /note="source:CACAO_hAT_E410_scaffold_1 1424 2080" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24968344..24968555) /note="source:scaffold_6_CACTA_0700 7362 7550" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24968556..24968580 /note="source:CACAO_PIF_E144_scaffold_10 1650 1902" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 24968932..24969221 /note="source:scaffold_9_CACTA_0945 4218 4497" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24969643..24974622 /note="source:CACAO_M_E22928_F10_scaffold_3 1 4980" /mobile_element_type="retrotransposon:LTR/Copia" gene 24976409..24977428 /locus_tag="TCM_014894" /note="dbxref CacaoGD:Thecc1EG014894" mRNA join(24976409..24976521,24976769..24977428) /locus_tag="TCM_014894" /product="Lipase/lipooxygenase" /inference="alignment:exonerate- protein:2:ricco:30147.m014251" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001141t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10630.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6151t1" CDS join(24976453..24976521,24976769..24977236) /locus_tag="TCM_014894" /note="paralog of Thecc1EG001141t1" /codon_start=1 /product="Lipase/lipooxygenase" /protein_id="EOY22838.1" /db_xref="Phytozome:POPTR_0003s10630.1" /db_xref="TAIR:AT2G22170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9V6" /translation="MKDHWLSLILLVLLLSMAAGDSSNDCVYTLYVKTGSVIKAGTDS KISVTLGDSLGRSVRVSDLKSWGLMTPSHDYYERGNLDIFSGRGRCIGSSICRLNLTS DGSGSHHGWYCDYVEVTSTGPHKACSQTVFYVDQWLAGDAPPFQLTAILDGCSMRDGP AKRGINGPLVVGNPQRST" gene 24978048..24985310 /locus_tag="TCM_014895" /note="dbxref CacaoGD:Thecc1EG014895" mRNA join(24978048..24980909,24981810..24982404, 24984940..24985310) /locus_tag="TCM_014895" /product="Splicing factor-related" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g00850.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00850.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6177t1" CDS 24978468..24980873 /locus_tag="TCM_014895" /codon_start=1 /product="Splicing factor-related" /protein_id="EOY22839.1" /db_xref="Phytozome:POPTR_0001s00850.1" /db_xref="TAIR:AT5G51300.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H2P1" /translation="MDSVQTNLNDPQSFSAQNQNFYNQNPPPPPQTLASDYPPPPPPS QIVDPDPSQTLGSAPNHGYNNNSRVQVNHDADSNTVNNNSSWKPEMQKPLLSENGLTN THSGTTDKDYSGGEEETTSRRRRRSRWDPPSDSNNNQSGNEETGSGTKKRKSRWADDE PKPVIQLPDFMKDFTGGIQFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEP IYDNMGIRINTREYRARERLTKERQEIISQILKKNPAFKPPADYRPPKLQKKLYIPMK EYPGYNFIGLIIGPRGNTQKRMEKDTGAKIVIRGKGSVKEGRLQQKRDLKPDPSENED LHVLVEADTQESLDAAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLC GEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCPMKGTTGKKMDDEYQNFLAELG GTVPDSATKQNTTSVCSGSNPPWASNSGSAGSAHPGLGSNAVKPPKEYDDTNLYIGYL PPNLDDDGLISLFSSYGDIVMAKVIKDRVTGLSKGYGFVKYANVDMANNAIKGMNGYR LEGRTIAVRVAGKPPQPTVPPGPPASTMPTYPVSSQPVGAYPSQQFTTGGPLPNAAPA SYAGNPVPWGPPVPPPYAPYAPPPPPPGSTMYPPVPGQPMPPYGLQYTAQMQTVPPGV PPPPVTSSETPQSFPPGVQSENSTSAPAVPTNIYGNSMTAIPPNSQSAYPTSSLGYSS YYNAVPPPPPPPAPTSLTDHAHSIGNVPWAPNPPLPPTVSSAEKTTYGTDAEYEKFMA EMK" gene 24986414..24991902 /locus_tag="TCM_014896" /note="dbxref CacaoGD:Thecc1EG014896" mRNA join(24986414..24986551,24986666..24986727, 24986854..24986914,24987714..24987753,24988742..24989143, 24989611..24989699,24989783..24990019,24991351..24991902) /locus_tag="TCM_014896" /product="DNA binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01014052001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037553t1" /inference="similar to AA sequence:ricco:30147.m014249" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g08384t00001" mRNA join(24986424..24986551,24986666..24986727, 24986854..24986914,24987714..24987753,24988742..24988986, 24989080..24989143,24989611..24989699,24989783..24990019, 24991351..24991712) /locus_tag="TCM_014896" /product="DNA binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01014052001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037553t1" /inference="similar to AA sequence:ricco:30147.m014249" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01545t00002; inference alignment:Newbler:10:TSA:cgbaP2_g08384t00001" CDS join(24986516..24986551,24986666..24986727, 24986854..24986914,24987714..24987753,24988742..24989143, 24989611..24989699,24989783..24990019,24991351..24991503) /locus_tag="TCM_014896" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014249; paralog of Thecc1EG037553t1" /codon_start=1 /product="DNA binding protein, putative isoform 1" /protein_id="EOY22840.1" /db_xref="TAIR:AT5G09380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9V4" /translation="MDQDGPSSGRRKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQ AQYLLGRFNENQTRQRPKVEKKSSAQISFGPGAPSSNLLRAYGSQRGGTSGKSTDSRQ RSPDDNDGQIIGSFPSASKEDRTDICSSDAIEASAPKIKREYREPWVKVCSLFVCLRP SAHLCAIPLILLSSMIALQDYHHTYYPITLPLRRPYSGDPELLDQAEFVEAARKEYDE KTINPASDLGLLEEGEKGKMFFFQLPANLPVIKRLASTKGKEKAENLGSSERFGALKK GCQLEELPGGFMGKMLVYKSGAVKLKLGETLYDVSPGSDCIFAQDVAAVNTTEKHCCV IGELGKRVVVTPDISSVLNSVIDLG" CDS join(24986516..24986551,24986666..24986727, 24986854..24986914,24987714..24987753,24988742..24988986, 24989080..24989143,24989611..24989699,24989783..24990019, 24991351..24991503) /locus_tag="TCM_014896" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014249; paralog of Thecc1EG037553t1" /codon_start=1 /product="DNA binding protein, putative isoform 2" /protein_id="EOY22841.1" /db_xref="TAIR:AT5G09380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9V4" /translation="MDQDGPSSGRRKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQ AQYLLGRFNENQTRQRPKVEKKSSAQISFGPGAPSSNLLRAYGSQRGGTSGKSTDSRQ RSPDDNDGQIIGSFPSASKEDRTDICSSDAIEASAPKIKREYREPWDYHHTYYPITLP LRRPYSGDPELLDQAEFVEAARKEYDEKTINPASDLGLLEEGEKGKMFFFQLPANLPV IKRLASTKGKEKAENLGSSERFGALKKGCQLEELPGGFMGKMLVYKSGAVKLKLGETL YDVSPGSDCIFAQDVAAVNTTEKHCCVIGELGKRVVVTPDISSVLNSVIDLG" gene complement(24991942..24996152) /locus_tag="TCM_014897" /note="dbxref CacaoGD:Thecc1EG014897" mRNA complement(join(24991942..24992427,24993871..24993964, 24994072..24994315,24995388..24996152)) /locus_tag="TCM_014897" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014248" /inference="similar to AA sequence:Phytozome:POPTR_0001s00840.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6168t3" CDS complement(join(24992147..24992427,24993871..24993964, 24994072..24994315,24995388..24995863)) /locus_tag="TCM_014897" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22842.1" /db_xref="Phytozome:POPTR_0001s00840.1" /db_xref="TAIR:AT4G25170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUH6" /translation="MMFGGGKGMGGGAGGANMLRTVGRAVVRAGVTTGNPTTFQEPLS SASSNSTTTPPSPTSASQRHNNSNSNTYLSISSGSSAFGSCNTGVPISANSGLPSNWP PFAAAPASAAASCCDEFEWVSVDGSEGERPHGVLDDFVLGPVPSVGEVQNVVSALQRV FDASSSPQLIRDKFSYNAGKEIAYQIPSPTGSMHRVHSAGSESEWKEPSLHLYNTGAL QPYGTNRVYDAFHLLQTEPLVQKMVFSLSSDKAVWDAVLNNEVVKELRDSYYAAEDSN PLSSDESSDENSDESNKATNIVKWIFENTKAKVIDVYEKMIKLVNELFKLRTDDKTTA GTPDPFEERLRTSFLLSVLVLLIVVVTRAN" mobile_element 24996197..24996285 /note="source:CACAO_Mariner_E220_scaffold_9 14763 14852" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(24996283..24996992) /note="source:CACAO_on_E373_scaffold_1 1 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 24998549..25000963 /locus_tag="TCM_014898" /note="dbxref CacaoGD:Thecc1EG014898" mRNA join(24998549..24998573,24998998..24999164, 24999883..25000080,25000296..25000559,25000714..25000963) /locus_tag="TCM_014898" /product="Ribosomal protein L23/L15e family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g41620.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015938t3" /inference="similar to AA sequence:Phytozome:POPTR_0013s11140.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9055t1" CDS join(24998570..24998573,24998998..24999164, 24999883..25000080,25000296..25000541) /locus_tag="TCM_014898" /note="paralog of Thecc1EG015938t3" /codon_start=1 /product="Ribosomal protein L23/L15e family protein" /protein_id="EOY22843.1" /db_xref="Phytozome:POPTR_0013s11140.1" /db_xref="TAIR:AT4G16720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0D287" /translation="MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTR PDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVA EERAGRKLGGLRVVNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWICNPVHKHRE LRGLTSAGKKYRGLRGRGHLHHKARPSRRANWKRNNTLSLRRYR" gene 25001123..25009288 /locus_tag="TCM_014899" /note="dbxref CacaoGD:Thecc1EG014899" mRNA join(25001123..25001806,25001925..25002004, 25002104..25002198,25002748..25002908,25003448..25003599, 25004109..25004221,25004714..25004877,25005065..25005139, 25006089..25006160,25006637..25006774,25007106..25007261, 25007889..25007941,25008032..25008210,25008374..25008471, 25008866..25009288) /locus_tag="TCM_014899" /product="Lipid transporters isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00830.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00830.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b014390t1a2; alternateUTRof:Thecc1EG014899t1; inference alignment:Newbler:10:TSA:cgbaB_g04461t00001" mRNA join(25001255..25001806,25001925..25002004, 25002104..25002198,25002748..25002908,25003448..25003599, 25004109..25004221,25004714..25004877,25005065..25005139, 25006089..25006160,25006637..25006774,25007106..25007261, 25007889..25007941,25008032..25008210,25008374..25008796) /locus_tag="TCM_014899" /product="Lipid transporters isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00830.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00830.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04461t00001; inference alignment:Newbler:10:TSA:cgbaB_g04461t00001" mRNA join(25001413..25001806,25001925..25002004, 25002104..25002198,25002748..25002908,25003448..25003599, 25004109..25004221,25004714..25004877,25005062..25005139, 25006089..25006160,25006637..25006774,25007106..25007261, 25007889..25007941,25008032..25008210,25008374..25009230) /locus_tag="TCM_014899" /product="Lipid transporters isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00830.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00830.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6227t1; inference alignment:Newbler:10:TSA:cgbaB_g04461t00001" CDS join(25001752..25001806,25001925..25002004, 25002104..25002198,25002748..25002908,25003448..25003599, 25004109..25004221,25004714..25004877,25005062..25005139, 25006089..25006160,25006637..25006774,25007106..25007261, 25007889..25007941,25008032..25008210,25008374..25008434) /locus_tag="TCM_014899" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Lipid transporters isoform 3" /protein_id="EOY22846.1" /db_xref="Phytozome:POPTR_0001s00830.1" /db_xref="TAIR:AT5G07630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUH7" /translation="MSEASDRTNLSHTFKYLLATQFLSRGIPFIFNSWIVRHLTEEDY AVYAVQFHLFVTCVLFLSREGFRRACMRADIRFEGASTKDNAATLLKVAWMTFPLGVV ITILACVFVFWWQGLHLSDPYAQAILINGYACIAELLAEPLYILSQTLFLLKLRLIVE TAATLLRCITMYILIVNLTKMEKGIVFALSQAAYGSCLFLGYWGYFLCAFRSFDLFPF RLGHILDFDKQLRKMCMLFTLQSLQKLVLQEGEKMVLVWLDTPYNQAVYGLVDKLVGS LVVRLVFLPFEESSYATFARSASGQSPHKSKKIGESLTEALKLVLLIGLIFLAFGPSY SYSLVRLLYGQKWSDGEASAALRYYCLYIIVLAMNGTSEAFLHAVATENQLKRSNDSL LVFSVIYVASNYLLIRSAGAVGLILANSLNMILRIIYSAVFIKHFFQESFSFSFYSCL PSGWPMLLLSGVTTLISEKVFLDRKNFWPSFLIHFSIGFTFFCISAFVIYRRERPFIS KVIRFRDHLD" CDS join(25001752..25001806,25001925..25002004, 25002104..25002198,25002748..25002908,25003448..25003599, 25004109..25004221,25004714..25004877,25005065..25005139, 25006089..25006160,25006637..25006774,25007106..25007261, 25007889..25007941,25008032..25008210,25008374..25008434) /locus_tag="TCM_014899" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Lipid transporters isoform 1" /protein_id="EOY22844.1" /db_xref="Phytozome:POPTR_0001s00830.1" /db_xref="TAIR:AT5G07630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUH7" /translation="MSEASDRTNLSHTFKYLLATQFLSRGIPFIFNSWIVRHLTEEDY AVYAVQFHLFVTCVLFLSREGFRRACMRADIRFEGASTKDNAATLLKVAWMTFPLGVV ITILACVFVFWWQGLHLSDPYAQAILINGYACIAELLAEPLYILSQTLFLLKLRLIVE TAATLLRCITMYILIVNLTKMEKGIVFALSQAAYGSCLFLGYWGYFLCAFRSFDLFPF RLGHILDFDKQLRKMCMLFTLQSLQKLVLQEGEKMVLVWLDTPYNQAVYGLVDKLGSL VVRLVFLPFEESSYATFARSASGQSPHKSKKIGESLTEALKLVLLIGLIFLAFGPSYS YSLVRLLYGQKWSDGEASAALRYYCLYIIVLAMNGTSEAFLHAVATENQLKRSNDSLL VFSVIYVASNYLLIRSAGAVGLILANSLNMILRIIYSAVFIKHFFQESFSFSFYSCLP SGWPMLLLSGVTTLISEKVFLDRKNFWPSFLIHFSIGFTFFCISAFVIYRRERPFISK VIRFRDHLD" CDS join(25001752..25001806,25001925..25002004, 25002104..25002198,25002748..25002908,25003448..25003599, 25004109..25004221,25004714..25004877,25005065..25005139, 25006089..25006160,25006637..25006774,25007106..25007261, 25007889..25007941,25008032..25008210,25008374..25008434) /locus_tag="TCM_014899" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Lipid transporters isoform 1" /protein_id="EOY22845.1" /db_xref="Phytozome:POPTR_0001s00830.1" /db_xref="TAIR:AT5G07630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUH7" /translation="MSEASDRTNLSHTFKYLLATQFLSRGIPFIFNSWIVRHLTEEDY AVYAVQFHLFVTCVLFLSREGFRRACMRADIRFEGASTKDNAATLLKVAWMTFPLGVV ITILACVFVFWWQGLHLSDPYAQAILINGYACIAELLAEPLYILSQTLFLLKLRLIVE TAATLLRCITMYILIVNLTKMEKGIVFALSQAAYGSCLFLGYWGYFLCAFRSFDLFPF RLGHILDFDKQLRKMCMLFTLQSLQKLVLQEGEKMVLVWLDTPYNQAVYGLVDKLGSL VVRLVFLPFEESSYATFARSASGQSPHKSKKIGESLTEALKLVLLIGLIFLAFGPSYS YSLVRLLYGQKWSDGEASAALRYYCLYIIVLAMNGTSEAFLHAVATENQLKRSNDSLL VFSVIYVASNYLLIRSAGAVGLILANSLNMILRIIYSAVFIKHFFQESFSFSFYSCLP SGWPMLLLSGVTTLISEKVFLDRKNFWPSFLIHFSIGFTFFCISAFVIYRRERPFISK VIRFRDHLD" mobile_element 25014046..25014171 /note="source:scaffold_3_CACTA_0396 884 1009" /mobile_element_type="transposon:TIR/CACTA" gene complement(25017656..25019025) /locus_tag="TCM_014900" /note="dbxref CacaoGD:Thecc1EG014900" mRNA complement(join(25017656..25018334,25018870..25019025)) /locus_tag="TCM_014900" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage" CDS complement(join(25018000..25018334,25018870..25018978)) /locus_tag="TCM_014900" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22847.1" /translation="MSTLLSPFLFSITNFYPFSRKINTNNGVLLIEYYLMELRPAIER ERGSSMARRGGQAREWRVLGGVQNSFPLCLPHTLHLQKGGHGWETLALSRGITCLACA GGGRGRGLGFGVKGMTLPAKSAIYLWHEHDDEDWACPASCAHANA" gene 25019178..25026379 /locus_tag="TCM_014901" /note="dbxref CacaoGD:Thecc1EG014901" mRNA join(25019178..25019490,25021358..25024483, 25025644..25026379) /locus_tag="TCM_014901" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003902t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00820.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc142t1" mRNA join(25021596..25024467,25026164..25026308) /locus_tag="TCM_014901" /product="Leucine-rich repeat protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003902t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00820.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc87t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc142t1" CDS join(25021819..25024467,25026164..25026265) /locus_tag="TCM_014901" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG003902t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 2" /protein_id="EOY22849.1" /db_xref="Phytozome:POPTR_0001s00820.1" /db_xref="TAIR:AT5G61480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I2U3" /translation="MKPPFLLFLTFTFYLLKSSRLAFSASAPPLPLISLLSIKSSLKD PLSTFKDWDPTPTFSKPNFEDPVWCAWSGIKCNPKTAQVTSLDLSRRNLSGIIPAEIR YLTSLVNLNLSANYFDGPLQPAIFELTQLRTLDISHNSFNSTFPPGVSKLKFLKTFNA YSNSFRGPLPQEFIHLRFLEQLNLGGSYFEGEIPVGYGSFTRLKLLDLAGNTLVGTLP PKLGFLSQLERIEIGYNAFSGTVPVEFAQLSNLKYLDISNCTLSGPLPEELGNLTKLE ALYFFKNSFTGEIPVSYTNLKALRVLDLSDNQLTGTIPEGLASLTELTWLSLIGNNLS GTIPDGVGELPNLNTLLLWNNNFSGILPQKLGSNGKLLSLDVSSNSLTGPIPPNLCYG NRLFKLILFSNMFMHELPGSLVNCTSLSRFRIQNNLLNGTIPYGFGLLTNLTFVDMSR NSFTGEIPQDLGYAPALQFLNISENSFNTALPSNIWGAPSLQIFSASSSKLTGKIPDF IGCKNVYKIELQGNFLNGSIPWDIDHCDKLLALNLSRNLLTGIIPWEISTLPSITAVD LSHNFLTGTIPSNFENCSTLETFNVAYNLLTGPIPSSGPIFPNLHPSSFSGNDGLCGR ILAKPCPAEAMAAGDVEVRNKQQQPKKTAGAIVWIMAAAFGIGLFVLVAGTRCFHANY SRRFSDDREIGPWKLTAFQRLNFTADDVLECLSMTDKIIGMGSTGTVYKAEMPGGEII AVKKLWGKHKENIRRRRGVLAEVDVLGNVRHRNIVRLLGCCSNRECTMLLYEYMPNGN LDDLLHGKNKGENLVADWVTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGE MEARVADFGVAKLIQSDESMSVIAGSYSLSMEFSSVLALISLMLYLNYYYYYDNDIAV YI" CDS join(25021819..25024483,25025644..25026068) /locus_tag="TCM_014901" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG003902t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY22848.1" /db_xref="Phytozome:POPTR_0001s00820.1" /db_xref="TAIR:AT5G61480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I2U3" /translation="MKPPFLLFLTFTFYLLKSSRLAFSASAPPLPLISLLSIKSSLKD PLSTFKDWDPTPTFSKPNFEDPVWCAWSGIKCNPKTAQVTSLDLSRRNLSGIIPAEIR YLTSLVNLNLSANYFDGPLQPAIFELTQLRTLDISHNSFNSTFPPGVSKLKFLKTFNA YSNSFRGPLPQEFIHLRFLEQLNLGGSYFEGEIPVGYGSFTRLKLLDLAGNTLVGTLP PKLGFLSQLERIEIGYNAFSGTVPVEFAQLSNLKYLDISNCTLSGPLPEELGNLTKLE ALYFFKNSFTGEIPVSYTNLKALRVLDLSDNQLTGTIPEGLASLTELTWLSLIGNNLS GTIPDGVGELPNLNTLLLWNNNFSGILPQKLGSNGKLLSLDVSSNSLTGPIPPNLCYG NRLFKLILFSNMFMHELPGSLVNCTSLSRFRIQNNLLNGTIPYGFGLLTNLTFVDMSR NSFTGEIPQDLGYAPALQFLNISENSFNTALPSNIWGAPSLQIFSASSSKLTGKIPDF IGCKNVYKIELQGNFLNGSIPWDIDHCDKLLALNLSRNLLTGIIPWEISTLPSITAVD LSHNFLTGTIPSNFENCSTLETFNVAYNLLTGPIPSSGPIFPNLHPSSFSGNDGLCGR ILAKPCPAEAMAAGDVEVRNKQQQPKKTAGAIVWIMAAAFGIGLFVLVAGTRCFHANY SRRFSDDREIGPWKLTAFQRLNFTADDVLECLSMTDKIIGMGSTGTVYKAEMPGGEII AVKKLWGKHKENIRRRRGVLAEVDVLGNVRHRNIVRLLGCCSNRECTMLLYEYMPNGN LDDLLHGKNKGENLVADWVTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGE MEARVADFGVAKLIQSDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSFGVVLMEILS GKRSVDSEFGDGNSIVDWVRSKIKSKDGIIHILDKNAGASCASVREEMMQMLTIALLC TSRNPADRPSMRDVVLMLQEAKPKRKLPESVVNGGSVVHVGADGTDDAIAQKATVEC" gene complement(25027262..25029523) /locus_tag="TCM_014902" /note="dbxref CacaoGD:Thecc1EG014902" mRNA complement(join(25027262..25027589,25028033..25028143, 25028276..25028365,25028553..25028789,25028881..25029523)) /locus_tag="TCM_014902" /product="Family of Uncharacterized protein function, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014243" /inference="similar to AA sequence:Phytozome:POPTR_0001s00810.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc7259t1" CDS complement(join(25027518..25027589,25028033..25028143, 25028276..25028365,25028553..25028789,25028881..25029495)) /locus_tag="TCM_014902" /codon_start=1 /product="Family of Uncharacterized protein function, putative" /protein_id="EOY22850.1" /db_xref="Phytozome:POPTR_0001s00810.1" /db_xref="TAIR:AT4G25190.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUH9" /translation="METLNFTRRHHSEARPPSPRLLRSRSGTPALTLPENRASSVNSS QSFANRSKSTTRSSRIQRNEENVNPATVISSMQKKPNHQESRSDGFVRFLQRGSPRNS GTATKGSKPITSSPSAWALSPGRSSTLMVAREPQGSCGTGVKAKSSKGGGVGGVLKYF RQKKVSPMQEEEYHRFRVLYNRMLQWRFVNARAEVAMTAAKIDAQDKIFGVWLRILKI RNSTLEKRILLQKLMHEIKLHRILGPQLCLLNEWVKLEGKNYEAASRVIRKLSAILVR VPLVQDAEGDVESIYDAMSSAVAVMHGIEATIIEIFSQPLEKLLYLVTELISMLEQQK DCLEELEKVITLVPPLVVSEQSVRVHFIQAGMELERCQID" mobile_element complement(25028162..25028211) /note="source:scaffold_4_CACTA_0505 16310 16361" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25030952..25031051) /note="source:scaffold_6_CACTA_0709 2585 2696" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25032099..25032229 /note="source:CACAO_M_E57346_F74_scaffold_9 6177 6313" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25036462..25038313) /locus_tag="TCM_014903" /note="dbxref CacaoGD:Thecc1EG014903" mRNA complement(25036462..25038313) /locus_tag="TCM_014903" /product="C2H2 zinc finger protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00800.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00800.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc8908t1" mobile_element complement(25036660..25036722) /note="source:scaffold_9_CACTA_0943 9050 9119" /mobile_element_type="transposon:TIR/CACTA" CDS complement(25037324..25038262) /locus_tag="TCM_014903" /codon_start=1 /product="C2H2 zinc finger protein, putative" /protein_id="EOY22851.1" /db_xref="Phytozome:POPTR_0001s00800.1" /db_xref="TAIR:AT3G60580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUI0" /translation="MEKKSKTCKICNRRFASGKAMGGHMRSHLAKLPIPPKLSLPSSS STPAPNNNKSPPPSSSALSRDPSSEVNHMQPYRSELSSETESPRNPTGRRSKRLRKVA LNMVGSPSDSVSSIVIPVIPAETETLSSEDAAMCLLMLSKDKWTTIKKEQKEVYYESI DDEEEFDGDGDDDVDENENNDDDDLFCVTNPGAQAHPKYKCETCNRVFKSHQALGGHR ASHKNKQVIRASIEEGEEAEGEKCGGAGGGDQIEQQRIFECPFCDKVFQSGQALGGHK KSHFTYLAVADKVPEKSSAVQLFDLNLPAPEYDDES" gene 25038909..25042238 /locus_tag="TCM_014904" /note="dbxref CacaoGD:Thecc1EG014904" mRNA join(25038909..25039127,25041640..25042238) /locus_tag="TCM_014904" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element complement(25039317..25039633) /note="source:scaffold_9_CACTA_0946 17816 18163" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25039571..25039663 /note="source:CACAO_Mutator_E592_scaffold_3 3627 3721" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25039885..25040060) /note="source:MITE_Unknow_3_2 302 479" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(25040632..25040691) /note="source:CACAO_MITE_S205_scaffold_9 187 247" /mobile_element_type="transposon:TIR/MITE" CDS 25041716..25041970 /locus_tag="TCM_014904" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22852.1" /translation="MDQWVHHLHSQHIDNGIRKVNLTLIDIVRVHEKEFSDRAKNAGQ RARLQRRVKNAATNDDSDGSGNSNGFGGWDGSGGFDLVLL" mobile_element 25042803..25042842 /note="source:CACAO_PIF_E144_scaffold_10 5993 6032" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25044421..25044595 /note="source:scaffold_4_CACTA_0498 3984 4149" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25044897..25045851 /note="source:CACAO_M_E49279_F74_scaffold_6 1002 1936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25045940..25046155) /note="source:scaffold_4_CACTA_0509 8408 8619" /mobile_element_type="transposon:TIR/CACTA" gene 25047064..25060887 /locus_tag="TCM_014905" /note="dbxref CacaoGD:Thecc1EG014905" mRNA join(25047064..25047393,25047509..25047614, 25047725..25047858,25048078..25048133,25048260..25048346, 25048428..25048748,25049007..25049126,25049593..25049727, 25050413..25050489,25050578..25050653,25051696..25051770, 25051896..25052000,25052536..25052705,25052788..25052890, 25053242..25053354,25054607..25054811,25055501..25055632, 25055741..25055855,25055946..25056031,25056128..25056223, 25056314..25056450,25056541..25056643,25057870..25057949, 25058075..25058153,25058307..25058364,25058595..25058692, 25058843..25058985,25059864..25060887) /locus_tag="TCM_014905" /product="Structural maintenance of chromosomes 6A, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013865001" /inference="similar to AA sequence:ricco:30147.m014241" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1063t12" mRNA join(25047094..25047393,25047509..25047614, 25047725..25047858,25048078..25048133,25048260..25048346, 25048428..25048748,25049007..25049126,25049593..25049727, 25050413..25050489,25050578..25050653,25051696..25051770, 25051896..25052000,25052536..25052705,25052788..25052890, 25053242..25053354,25054607..25054811,25055501..25055632, 25055741..25055855,25055946..25056031,25056128..25056223, 25056314..25056455,25056541..25056643,25057870..25057949, 25058075..25058153,25058307..25058364,25058595..25058692, 25058843..25058937,25060214..25060693) /locus_tag="TCM_014905" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013865001" /inference="similar to AA sequence:Phytozome:GSVIVT01013865001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1062t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1063t12" mRNA join(25047094..25047393,25047509..25047614, 25047725..25047858,25048078..25048133,25048260..25048346, 25048428..25048748,25049007..25049126,25049593..25049727, 25050413..25050489,25050578..25050653,25051696..25051770, 25051896..25052000,25052536..25052705,25052788..25052890, 25053242..25053354,25054607..25054811,25055501..25055632, 25055741..25055855,25055946..25056031,25056128..25056223, 25056314..25056450,25056541..25056643,25057870..25057949, 25058075..25058153,25058307..25058364,25058595..25058692, 25058843..25058937,25060214..25060281,25060443..25060693) /locus_tag="TCM_014905" /product="Structural maintenance of chromosomes 6A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013865001" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g019370.1" /inference="similar to AA sequence:ricco:30147.m014241" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1062t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1063t12" mRNA join(25047094..25047393,25047509..25047614, 25047725..25047858,25048078..25048133,25048260..25048346, 25048428..25048748,25049007..25049126,25049593..25049727, 25050413..25050489,25050578..25050653,25051696..25051770, 25051896..25052000,25052536..25052705,25052788..25052890, 25053242..25053354,25054607..25054811,25055501..25055632, 25055741..25055855,25055946..25056031,25056128..25056223, 25056314..25056450,25056541..25056643,25057870..25057949, 25058075..25058153,25058307..25058364,25058595..25058692, 25058850..25058937,25060214..25060693) /locus_tag="TCM_014905" /product="Structural maintenance of chromosomes 6A, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013865001" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g019370.1" /inference="similar to AA sequence:ricco:30147.m014241" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1062t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1063t12" mRNA join(25047225..25047393,25047509..25047614, 25047725..25047858,25048078..25048133,25048260..25048346, 25048428..25048748,25049007..25049126,25049593..25049727, 25050413..25050489,25050578..25050653,25051696..25051770, 25051896..25052000,25052536..25052705,25052788..25052890, 25053242..25053354,25054607..25054811,25055501..25055632, 25055741..25055855,25055946..25056031,25056128..25056223, 25056314..25056450,25056541..25056643,25057870..25057949, 25058075..25058153,25058307..25058364,25058592..25058692, 25058843..25058937,25060214..25060693) /locus_tag="TCM_014905" /product="Structural maintenance of chromosomes 6A, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013865001" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g019370.1" /inference="similar to AA sequence:ricco:30147.m014241" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6250t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1063t12" CDS join(25047237..25047393,25047509..25047614, 25047725..25047858,25048078..25048133,25048260..25048346, 25048428..25048748,25049007..25049126,25049593..25049727, 25050413..25050489,25050578..25050653,25051696..25051770, 25051896..25052000,25052536..25052705,25052788..25052890, 25053242..25053354,25054607..25054811,25055501..25055632, 25055741..25055855,25055946..25056031,25056128..25056223, 25056314..25056450,25056541..25056643,25057870..25057949, 25058075..25058153,25058307..25058364,25058592..25058692, 25058843..25058937,25060214..25060271) /locus_tag="TCM_014905" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m014241" /codon_start=1 /product="Structural maintenance of chromosomes 6A, putative isoform 4" /protein_id="EOY22856.1" /db_xref="TAIR:AT5G07660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLR5" /translation="MSYSRVLPDQIYGGQRSGAGTIKRIRLENFMCHSSLEIELCEGV NFITGQNGSGKSAILTALCIAFGCRAKDTQRASKLKEFIKTGCSYAIVQVEIKNEGVD AFRPEIYGDYIMIERRISDSTSSTFMKDRQGKKVASRKEDLRELVEHFNIDVENPCVI MSQDKSREFLHSGNDKDKFKFFFKATLLQQVDELLQTIIKQLKDAFALVDELETLIRP IQLELSELQEKIKNMERVEEISREVQQLKKKLAWSWVYDVDRQLQEQGAKIEKLKDRI PTCQAKIDSILHNLEKLQEHFSNKKVQVACLVEKTSLVRRRKDELWDAFCVATKEKLE LEEEHGRSTKQIQKMLNNVRMLEEQARDIQEKHFRNTQAEESEIEEQIKEIEYAVDHV KSILSSLKEEGNTLSEHASAEVDVMKKINDEIKDYEKKQHEIDRQIRELQLHQTNRVT AFGGDGVLRLLREIERHHHKFTMPPIGPIGAHVTLVNGDTWAPAVEQAIGKLLNAFIV TNSKDASALRTCAKEARYNYFPIVIHEFSRPRLKIPNHSLPQTKHPTTLSVLRSDNPT VFNVLVDTVKAERQVLVKDYNIGRAVAFDQRIPNLMEVFTLDGFRMFSRGSVQTILPS NKKLRIGRLCGSFDDQIKEFEKHALSVDVEIKQCKSRKRESEKKLWDFDSRLHNVKRR RLDVERDLTAKSMKLRDVQNSLVAEAGVSPESTTNELLQEISNVKMEIQQKEALLETL RERMIEAEAKARTLKLSFEDLGESTKGEIVAFQKAEEELTEIEKEINAAQAMRAHYES VMNDKVLPLIKEAEAQYLDLENSRKESYRKASVICPESEIEALGGWDGSTPEQLSAHL NRLNQRLKHESHQYSESIDDLRMLYQEKEHKILRKLQTYKAFREKLDACQKALDLRWK KFNRNASLLKRELTWQFNGHLGKKGISGHINVSYEEKTLSVEVKMPQDASSGIVRDTR GLSAGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVEFALAQGS QWIFITPHDISMVKQGERIKKQQMAAPRS" CDS join(25047237..25047393,25047509..25047614, 25047725..25047858,25048078..25048133,25048260..25048346, 25048428..25048748,25049007..25049126,25049593..25049727, 25050413..25050489,25050578..25050653,25051696..25051770, 25051896..25052000,25052536..25052705,25052788..25052890, 25053242..25053354,25054607..25054811,25055501..25055632, 25055741..25055855,25055946..25056031,25056128..25056223, 25056314..25056450,25056541..25056643,25057870..25057949, 25058075..25058153,25058307..25058364,25058595..25058692, 25058843..25058937,25060214..25060271) /locus_tag="TCM_014905" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014241" /codon_start=1 /product="Structural maintenance of chromosomes 6A isoform 2" /protein_id="EOY22854.1" /db_xref="TAIR:AT5G07660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLR5" /translation="MSYSRVLPDQIYGGQRSGAGTIKRIRLENFMCHSSLEIELCEGV NFITGQNGSGKSAILTALCIAFGCRAKDTQRASKLKEFIKTGCSYAIVQVEIKNEGVD AFRPEIYGDYIMIERRISDSTSSTFMKDRQGKKVASRKEDLRELVEHFNIDVENPCVI MSQDKSREFLHSGNDKDKFKFFFKATLLQQVDELLQTIIKQLKDAFALVDELETLIRP IQLELSELQEKIKNMERVEEISREVQQLKKKLAWSWVYDVDRQLQEQGAKIEKLKDRI PTCQAKIDSILHNLEKLQEHFSNKKVQVACLVEKTSLVRRRKDELWDAFCVATKEKLE LEEEHGRSTKQIQKMLNNVRMLEEQARDIQEKHFRNTQAEESEIEEQIKEIEYAVDHV KSILSSLKEEGNTLSEHASAEVDVMKKINDEIKDYEKKQHEIDRQIRELQLHQTNRVT AFGGDGVLRLLREIERHHHKFTMPPIGPIGAHVTLVNGDTWAPAVEQAIGKLLNAFIV TNSKDASALRTCAKEARYNYFPIVIHEFSRPRLKIPNHSLPQTKHPTTLSVLRSDNPT VFNVLVDTVKAERQVLVKDYNIGRAVAFDQRIPNLMEVFTLDGFRMFSRGSVQTILPS NKKLRIGRLCGSFDDQIKEFEKHALSVDVEIKQCKSRKRESEKKLWDFDSRLHNVKRR RLDVERDLTAKSMKLRDVQNSLVAEAGVSPESTTNELLQEISNVKMEIQQKEALLETL RERMIEAEAKARTLKLSFEDLGESTKGEIVAFQKAEEELTEIEKEINAAQAMRAHYES VMNDKVLPLIKEAEAQYLDLENSRKESYRKASVICPESEIEALGGWDGSTPEQLSAHL NRLNQRLKHESHQYSESIDDLRMLYQEKEHKILRKLQTYKAFREKLDACQKALDLRWK KFNRNASLLKRELTWQFNGHLGKKGISGHINVSYEEKTLSVEVKMPQDASSGIVRDTR GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVEFALAQGSQ WIFITPHDISMVKQGERIKKQQMAAPRS" CDS join(25047237..25047393,25047509..25047614, 25047725..25047858,25048078..25048133,25048260..25048346, 25048428..25048748,25049007..25049126,25049593..25049727, 25050413..25050489,25050578..25050653,25051696..25051770, 25051896..25052000,25052536..25052705,25052788..25052890, 25053242..25053354,25054607..25054811,25055501..25055632, 25055741..25055855,25055946..25056031,25056128..25056223, 25056314..25056450,25056541..25056643,25057870..25057949, 25058075..25058153,25058307..25058364,25058595..25058692, 25058843..25058985,25059864..25059996) /locus_tag="TCM_014905" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014241" /codon_start=1 /product="Structural maintenance of chromosomes 6A, putative isoform 1" /protein_id="EOY22853.1" /db_xref="TAIR:AT5G07660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLR5" /translation="MSYSRVLPDQIYGGQRSGAGTIKRIRLENFMCHSSLEIELCEGV NFITGQNGSGKSAILTALCIAFGCRAKDTQRASKLKEFIKTGCSYAIVQVEIKNEGVD AFRPEIYGDYIMIERRISDSTSSTFMKDRQGKKVASRKEDLRELVEHFNIDVENPCVI MSQDKSREFLHSGNDKDKFKFFFKATLLQQVDELLQTIIKQLKDAFALVDELETLIRP IQLELSELQEKIKNMERVEEISREVQQLKKKLAWSWVYDVDRQLQEQGAKIEKLKDRI PTCQAKIDSILHNLEKLQEHFSNKKVQVACLVEKTSLVRRRKDELWDAFCVATKEKLE LEEEHGRSTKQIQKMLNNVRMLEEQARDIQEKHFRNTQAEESEIEEQIKEIEYAVDHV KSILSSLKEEGNTLSEHASAEVDVMKKINDEIKDYEKKQHEIDRQIRELQLHQTNRVT AFGGDGVLRLLREIERHHHKFTMPPIGPIGAHVTLVNGDTWAPAVEQAIGKLLNAFIV TNSKDASALRTCAKEARYNYFPIVIHEFSRPRLKIPNHSLPQTKHPTTLSVLRSDNPT VFNVLVDTVKAERQVLVKDYNIGRAVAFDQRIPNLMEVFTLDGFRMFSRGSVQTILPS NKKLRIGRLCGSFDDQIKEFEKHALSVDVEIKQCKSRKRESEKKLWDFDSRLHNVKRR RLDVERDLTAKSMKLRDVQNSLVAEAGVSPESTTNELLQEISNVKMEIQQKEALLETL RERMIEAEAKARTLKLSFEDLGESTKGEIVAFQKAEEELTEIEKEINAAQAMRAHYES VMNDKVLPLIKEAEAQYLDLENSRKESYRKASVICPESEIEALGGWDGSTPEQLSAHL NRLNQRLKHESHQYSESIDDLRMLYQEKEHKILRKLQTYKAFREKLDACQKALDLRWK KFNRNASLLKRELTWQFNGHLGKKGISGHINVSYEEKTLSVEVKMPQDASSGIVRDTR GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVEFALAQGSQ WIFITPHDIRLLFILGYVCPNSPFSDSINPIMMLSYEARLRFFFHQIGNDPMPRQLWT FFEDFIKSLWF" CDS join(25047237..25047393,25047509..25047614, 25047725..25047858,25048078..25048133,25048260..25048346, 25048428..25048748,25049007..25049126,25049593..25049727, 25050413..25050489,25050578..25050653,25051696..25051770, 25051896..25052000,25052536..25052705,25052788..25052890, 25053242..25053354,25054607..25054811,25055501..25055632, 25055741..25055855,25055946..25056031,25056128..25056223, 25056314..25056450,25056541..25056643,25057870..25057949, 25058075..25058153,25058307..25058364,25058595..25058692, 25058850..25058879) /locus_tag="TCM_014905" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30147.m014241" /codon_start=1 /product="Structural maintenance of chromosomes 6A, putative isoform 5" /protein_id="EOY22857.1" /db_xref="TAIR:AT5G07660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLR5" /translation="MSYSRVLPDQIYGGQRSGAGTIKRIRLENFMCHSSLEIELCEGV NFITGQNGSGKSAILTALCIAFGCRAKDTQRASKLKEFIKTGCSYAIVQVEIKNEGVD AFRPEIYGDYIMIERRISDSTSSTFMKDRQGKKVASRKEDLRELVEHFNIDVENPCVI MSQDKSREFLHSGNDKDKFKFFFKATLLQQVDELLQTIIKQLKDAFALVDELETLIRP IQLELSELQEKIKNMERVEEISREVQQLKKKLAWSWVYDVDRQLQEQGAKIEKLKDRI PTCQAKIDSILHNLEKLQEHFSNKKVQVACLVEKTSLVRRRKDELWDAFCVATKEKLE LEEEHGRSTKQIQKMLNNVRMLEEQARDIQEKHFRNTQAEESEIEEQIKEIEYAVDHV KSILSSLKEEGNTLSEHASAEVDVMKKINDEIKDYEKKQHEIDRQIRELQLHQTNRVT AFGGDGVLRLLREIERHHHKFTMPPIGPIGAHVTLVNGDTWAPAVEQAIGKLLNAFIV TNSKDASALRTCAKEARYNYFPIVIHEFSRPRLKIPNHSLPQTKHPTTLSVLRSDNPT VFNVLVDTVKAERQVLVKDYNIGRAVAFDQRIPNLMEVFTLDGFRMFSRGSVQTILPS NKKLRIGRLCGSFDDQIKEFEKHALSVDVEIKQCKSRKRESEKKLWDFDSRLHNVKRR RLDVERDLTAKSMKLRDVQNSLVAEAGVSPESTTNELLQEISNVKMEIQQKEALLETL RERMIEAEAKARTLKLSFEDLGESTKGEIVAFQKAEEELTEIEKEINAAQAMRAHYES VMNDKVLPLIKEAEAQYLDLENSRKESYRKASVICPESEIEALGGWDGSTPEQLSAHL NRLNQRLKHESHQYSESIDDLRMLYQEKEHKILRKLQTYKAFREKLDACQKALDLRWK KFNRNASLLKRELTWQFNGHLGKKGISGHINVSYEEKTLSVEVKMPQDASSGIVRDTR GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMLAEKSVWTL" CDS join(25047237..25047393,25047509..25047614, 25047725..25047858,25048078..25048133,25048260..25048346, 25048428..25048748,25049007..25049126,25049593..25049727, 25050413..25050489,25050578..25050653,25051696..25051770, 25051896..25052000,25052536..25052705,25052788..25052890, 25053242..25053354,25054607..25054811,25055501..25055632, 25055741..25055855,25055946..25056031,25056128..25056223, 25056314..25056455,25056541..25056602) /locus_tag="TCM_014905" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /protein_id="EOY22855.1" /db_xref="Phytozome:GSVIVT01013865001" /db_xref="TAIR:AT5G07660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLR5" /translation="MSYSRVLPDQIYGGQRSGAGTIKRIRLENFMCHSSLEIELCEGV NFITGQNGSGKSAILTALCIAFGCRAKDTQRASKLKEFIKTGCSYAIVQVEIKNEGVD AFRPEIYGDYIMIERRISDSTSSTFMKDRQGKKVASRKEDLRELVEHFNIDVENPCVI MSQDKSREFLHSGNDKDKFKFFFKATLLQQVDELLQTIIKQLKDAFALVDELETLIRP IQLELSELQEKIKNMERVEEISREVQQLKKKLAWSWVYDVDRQLQEQGAKIEKLKDRI PTCQAKIDSILHNLEKLQEHFSNKKVQVACLVEKTSLVRRRKDELWDAFCVATKEKLE LEEEHGRSTKQIQKMLNNVRMLEEQARDIQEKHFRNTQAEESEIEEQIKEIEYAVDHV KSILSSLKEEGNTLSEHASAEVDVMKKINDEIKDYEKKQHEIDRQIRELQLHQTNRVT AFGGDGVLRLLREIERHHHKFTMPPIGPIGAHVTLVNGDTWAPAVEQAIGKLLNAFIV TNSKDASALRTCAKEARYNYFPIVIHEFSRPRLKIPNHSLPQTKHPTTLSVLRSDNPT VFNVLVDTVKAERQVLVKDYNIGRAVAFDQRIPNLMEVFTLDGFRMFSRGSVQTILPS NKKLRIGRLCGSFDDQIKEFEKHALSVDVEIKQCKSRKRESEKKLWDFDSRLHNVKRR RLDVERDLTAKSMKLRDVQNSLVAEAGVSPESTTNELLQEISNVKMEIQQKEALLETL RERMIEAEAKARTLKLSFEDLGESTKGEIVAFQKAEEELTEIEKEINAAQAMRAHYES VMNDKVLPLIKEAEAQYLDLENSRKESYRKASVICPESEIEALGGWDGSTPEQLSAHL NRLNQRLKHESHQLDIRNQLMILGCCIRRKNIRF" mobile_element 25053051..25053147 /note="source:scaffold_1_CACTA_0029 7133 7228" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25059926..25059983 /note="source:CACAO_LINE_E_154_scaffold_6 2695 2751" /mobile_element_type="retrotransposon:LINE/L1" gene 25062683..25065680 /locus_tag="TCM_014907" /note="dbxref CacaoGD:Thecc1EG014907" mRNA join(25062683..25064355,25064501..25065017) /locus_tag="TCM_014907" /product="F-box family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014240" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005609t1" /inference="similar to AA sequence:ricco:30147.m014240" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc916t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6198t1" mRNA join(25062757..25064355,25064995..25065680) /locus_tag="TCM_014907" /product="F-box family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014240" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005609t1" /inference="similar to AA sequence:ricco:30147.m014240" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6198t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6198t1" CDS join(25063190..25064355,25064995..25065262) /locus_tag="TCM_014907" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014240; paralog of Thecc1EG005609t1" /codon_start=1 /product="F-box family protein isoform 1" /protein_id="EOY22858.1" /db_xref="TAIR:AT5G07670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H075" /translation="MSVLEENPDSPLKKRPPSWSDIWLKNTKPLKHVVFAMQLQSLAS KDPKSQTLIPKFANIDRTLLLPDELLLKILSRLPISQRNPNSLVCKRWLNLQGRLVRS LKILDWDFLESGRLITRFPNLTHVDLLNGCLFSPRNSWILLTHRMVKMQTSSDFCSNW KLLEASLLPVEIVDRGLQALANGCPNLRRLVLINASELGLLTVAEECLTLQELELHKC NDNVLRGIAACENLQILKLVGNVDGLYSSLVSDIGLTILAQGCKRLVKLELSGCEGSF DGIKAIGQCCLMLEELTISDHRMDDGWLAALSFCENLKTLKLLSCKRIDLSPGPDEYL GFCPALERLHLQKCQLRSKKSVRALFRVCEAVREVVVQDCWGFDNDMFSYASVCRRVK FLSLEGCSLLTTGGLEAVILSWHELENLIVVSCKNIKESDISPALATLFSILKELRWR PDAKSLLASTLVGTGMGKRGGKFFKRT" CDS join(25063190..25064355,25064501..25064594) /locus_tag="TCM_014907" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014240; paralog of Thecc1EG005609t1" /codon_start=1 /product="F-box family protein isoform 2" /protein_id="EOY22859.1" /db_xref="TAIR:AT5G07670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H075" /translation="MSVLEENPDSPLKKRPPSWSDIWLKNTKPLKHVVFAMQLQSLAS KDPKSQTLIPKFANIDRTLLLPDELLLKILSRLPISQRNPNSLVCKRWLNLQGRLVRS LKILDWDFLESGRLITRFPNLTHVDLLNGCLFSPRNSWILLTHRMVKMQTSSDFCSNW KLLEASLLPVEIVDRGLQALANGCPNLRRLVLINASELGLLTVAEECLTLQELELHKC NDNVLRGIAACENLQILKLVGNVDGLYSSLVSDIGLTILAQGCKRLVKLELSGCEGSF DGIKAIGQCCLMLEELTISDHRMDDGWLAALSFCENLKTLKLLSCKRIDLSPGPDEYL GFCPALERLHLQKCQLRSKKSVRALFRVCEAVREVVVQDCWGFDNDMFSYASVCSPFV RLMWPERKKKVTFCCNDESLWPLIFKC" mobile_element complement(25065871..25066356) /note="source:scaffold_5_CACTA_0607 4934 5430" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25066358..25066539) /note="source:CACAO_on_S_E390_scaffold_9 2173 2362" /mobile_element_type="transposon:TIR/Mutator" gene 25066886..25076495 /locus_tag="TCM_014908" /note="dbxref CacaoGD:Thecc1EG014908" mRNA join(25066886..25067366,25067453..25067536, 25067719..25067792,25067883..25067916,25068044..25068102, 25068541..25068655,25068777..25068814,25069383..25069480, 25069677..25069732,25070612..25070894,25071037..25071149, 25071752..25071808,25073191..25073256,25073361..25073387, 25073933..25074007,25074650..25074724,25074833..25074873, 25075209..25075304,25075693..25076495) /locus_tag="TCM_014908" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10740.1" /inference="similar to AA sequence:Phytozome:GSVIVT01014047001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05605t00001" mRNA join(25066957..25067230,25067451..25067536, 25067719..25067792,25067883..25067916,25068044..25068102, 25068541..25068655,25068777..25068814,25069383..25069480, 25069677..25069732,25070612..25070894,25071037..25071149, 25071752..25071808,25073191..25073256,25073958..25074007, 25075209..25075304,25075693..25076378) /locus_tag="TCM_014908" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10740.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc396t2; inference alignment:Newbler:10:TSA:cgbaB_g05605t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc383t11" mRNA join(25066957..25067366,25067453..25067536, 25067719..25067792,25067883..25067916,25068044..25068102, 25068541..25068655,25068777..25068814,25069383..25069480, 25069677..25069732,25070612..25070894,25071037..25071149, 25071752..25071808,25071914..>25071990) /locus_tag="TCM_014908" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10740.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00780.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc383t11; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc383t11; inference alignment:Newbler:10:TSA:cgbaB_g05605t00001" mRNA join(25066957..25067366,25067719..25067792, 25067883..25067916,25068044..25068102,25068541..25068655, 25068777..25068814,25069383..25069480,25069677..25069732, 25070612..25070894,25071037..25071149,25071752..>25071809) /locus_tag="TCM_014908" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10740.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00780.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc395t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc383t11; inference alignment:Newbler:10:TSA:cgbaB_g05605t00001" CDS join(25067184..25067366,25067453..25067536, 25067719..25067792,25067883..25067916,25068044..25068102, 25068541..25068655,25068777..25068814,25069383..25069480, 25069677..25069732,25070612..25070894,25071037..25071149, 25071752..25071808,25073191..25073256,25073361..25073387, 25073933..25074007,25074650..25074724,25074833..25074873, 25075209..25075304,25075693..25075744) /locus_tag="TCM_014908" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY22860.1" /db_xref="Phytozome:GSVIVT01014047001" /db_xref="TAIR:AT5G61450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FII8" /translation="MGEYEKMMMMNNNKGKGIAVRTRANQNYGGEDEDDGKITSPSVP SAKSSPRNASSKYDFVKVKVWLGDNADHYYVLSRFLLSRMLTVTKIPNHVAIKIALEL KKLLIDNSLLDVSQSDLEANLFKLMERRGYGEEYINRYKMMTRFHHQRVPLVILVCGT ACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLASTPVWARDFSSSEELITE FCRECRIVRKGLNGDLKKAMKDGKPIIIEGIHLDPSIYLMEDEHKIPISVPEGHQAAP LSKASNDNSAVQMENNSTSTFGSHTEDSQNCPVHLSLDECVSADQVNKVSEYLESIAL STASDDKGETVKVPEVNGTTARKEKSGSEPIIIPIILNMAEFDHKALLEEWILTRTFS GNCPVKDTDSLIANLKTIQDYLCSFKSQSMAIQNHIEGLTVVNVSATTFPQTLDWLHG YLLQRLSLLFFLFLIPDKVVLLVRNISYWEFVVFNNNALLVRCALSKAFHQCPMKMVG GQRKNRLHAVFSLSNHRAGMRWMLKATPRILGC" CDS join(25067184..25067366,25067453..25067536, 25067719..25067792,25067883..25067916,25068044..25068102, 25068541..25068655,25068777..25068814,25069383..25069480, 25069677..25069732,25070612..25070894,25071037..25071149, 25071752..25071808,25071914..>25071988) /locus_tag="TCM_014908" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /protein_id="EOY22862.1" /db_xref="Phytozome:POPTR_0001s00780.1" /db_xref="TAIR:AT5G61450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FII8" /translation="MGEYEKMMMMNNNKGKGIAVRTRANQNYGGEDEDDGKITSPSVP SAKSSPRNASSKYDFVKVKVWLGDNADHYYVLSRFLLSRMLTVTKIPNHVAIKIALEL KKLLIDNSLLDVSQSDLEANLFKLMERRGYGEEYINRYKMMTRFHHQRVPLVILVCGT ACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLASTPVWARDFSSSEELITE FCRECRIVRKGLNGDLKKAMKDGKPIIIEGIHLDPSIYLMEDEHKIPISVPEGHQAAP LSKASNDNSAVQMENNSTSTFGSHTEDSQNCPVHLSLDECVSADQVNKVSEYLESIAL STASDDKGETVKVPEVNGTTARKEKSGSEPIIIPIILNMAEFDHKALLEEWILTRTFS GNCPVKLSGDISWNYQGFLIGSVLLRCAPRR" CDS join(25067184..25067366,25067719..25067792, 25067883..25067916,25068044..25068102,25068541..25068655, 25068777..25068814,25069383..25069480,25069677..25069732, 25070612..25070894,25071037..25071149,25071752..>25071808) /locus_tag="TCM_014908" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 4" /protein_id="EOY22863.1" /db_xref="Phytozome:POPTR_0001s00780.1" /db_xref="TAIR:AT5G61450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FII8" /translation="MGEYEKMMMMNNNKGKGIAVRTRANQNYGGEDEDDGKITSPSVP SAKSSPRNASSKYDFVKIPNHVAIKIALELKKLLIDNSLLDVSQSDLEANLFKLMERR GYGEEYINRYKMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY ELLRTSTDAPLASTPVWARDFSSSEELITEFCRECRIVRKGLNGDLKKAMKDGKPIII EGIHLDPSIYLMEDEHKIPISVPEGHQAAPLSKASNDNSAVQMENNSTSTFGSHTEDS QNCPVHLSLDECVSADQVNKVSEYLESIALSTASDDKGETVKVPEVNGTTARKEKSGS EPIIIPIILNMAEFDHKALLEEWILTRTFSGNCPVK" CDS join(25067519..25067536,25067719..25067792, 25067883..25067916,25068044..25068102,25068541..25068655, 25068777..25068814,25069383..25069480,25069677..25069732, 25070612..25070894,25071037..25071149,25071752..25071808, 25073191..25073256,25073958..25074007,25075209..25075304, 25075693..25075744) /locus_tag="TCM_014908" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY22861.1" /db_xref="Phytozome:POPTR_0001s00780.1" /db_xref="TAIR:AT5G61450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FII8" /translation="MLTVTKIPNHVAIKIALELKKLLIDNSLLDVSQSDLEANLFKLM ERRGYGEEYINRYKMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTD MVYELLRTSTDAPLASTPVWARDFSSSEELITEFCRECRIVRKGLNGDLKKAMKDGKP IIIEGIHLDPSIYLMEDEHKIPISVPEGHQAAPLSKASNDNSAVQMENNSTSTFGSHT EDSQNCPVHLSLDECVSADQVNKVSEYLESIALSTASDDKGETVKVPEVNGTTARKEK SGSEPIIIPIILNMAEFDHKALLEEWILTRTFSGNCPVKDTDSLIANLKTIQDYLCSF KSQRPHFHRHWIGCMDIFFSALSKAFHQCPMKMVGGQRKNRLHAVFSLSNHRAGMRWM LKATPRILGC" gene complement(25076097..25080349) /locus_tag="TCM_014909" /note="dbxref CacaoGD:Thecc1EG014909" mRNA complement(join(25076097..25076852,25076993..25077172, 25077631..25077874,25078339..25078514,25080165..25080349)) /locus_tag="TCM_014909" /product="NAD(P)-linked oxidoreductase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021862t1" /inference="similar to AA sequence:Phytozome:Glyma12g00940.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(join(25076625..25076852,25076993..25077172, 25077631..25077874,25078339..25078514,25080165..25080284)) /locus_tag="TCM_014909" /note="paralog of Thecc1EG021862t1" /codon_start=1 /product="NAD(P)-linked oxidoreductase superfamily protein" /protein_id="EOY22864.1" /db_xref="Phytozome:Glyma12g00940.1" /db_xref="TAIR:AT5G62420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJK0" /translation="MRSNEVRLNCGITVPLIGLGTYSFNNDRETTEQAIHVALKMGYR HLDTAKIYGSEPAVGNALRLAIEDESIRREDVFVTSKLWSADHHDPVSALKQTLRNLG MEYVDMYLVHWPVKLKPWACYAVPKEEDFEQLDLESTWAGMEKCLDMGLCRCIGVSNF SSKKVERLLEFASVPPAVNQVEMHPMWRQRKLREICADHKIHVSAYSPLGGPGNAWGS TAVVENPLIKSIALKHQATPAQVALNWGLSKGASVIVKSFNPDRLKENVASFDLKLDD EDLLEIDKLEERKMMRGEFLVNDTTSPYKTLEDLWDYEI" mobile_element complement(25081422..25081486) /note="source:scaffold_5_CACTA_0608 988 1055" /mobile_element_type="transposon:TIR/CACTA" gene complement(25081963..25102589) /locus_tag="TCM_014910" /note="dbxref CacaoGD:Thecc1EG014910" mRNA complement(join(25081963..25082306,25082469..25082567, 25082744..25082986,25083323..25083457,25083637..25083741, 25083824..25084015,25084110..25084263,25084896..25084957, 25085037..25085183,25085266..25085295,25085396..25085530, 25085643..25085789,25087102..25087185,25087280..25087417, 25087500..25087603,25087690..25087816,25089034..25089150, 25089225..25089302,25089413..25089457,25089750..25089872, 25089980..25090216,25090307..25090489,25091299..25091451, 25091593..25091688,25091784..25091889,25091967..25092049, 25092401..25092628,25092725..25092853,25092937..25092984, 25093098..25093244,25093329..25093437,25093589..25093734, 25094114..25094181,25094337..25094418,25094542..25094679, 25094768..25094812,25095711..25095944,25096028..25096122, 25097000..25097103,25097843..25098096,25098170..25098292, 25098395..25098532,25099388..25099579,25099678..25099869, 25099986..25100114,25100200..25100313,25100411..25100750, 25100873..25101101,25101195..25101425,25102066..25102589)) /locus_tag="TCM_014910" /product="Ccr4-not transcription complex, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g029180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005611t1" /inference="similar to AA sequence:frave:gene04794" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6204t1" CDS complement(join(25082175..25082306,25082469..25082567, 25082744..25082986,25083323..25083457,25083637..25083741, 25083824..25084015,25084110..25084263,25084896..25084957, 25085037..25085183,25085266..25085295,25085396..25085530, 25085643..25085789,25087102..25087185,25087280..25087417, 25087500..25087603,25087690..25087816,25089034..25089150, 25089225..25089302,25089413..25089457,25089750..25089872, 25089980..25090216,25090307..25090489,25091299..25091451, 25091593..25091688,25091784..25091889,25091967..25092049, 25092401..25092628,25092725..25092853,25092937..25092984, 25093098..25093244,25093329..25093437,25093589..25093734, 25094114..25094181,25094337..25094418,25094542..25094679, 25094768..25094812,25095711..25095944,25096028..25096122, 25097000..25097103,25097843..25098096,25098170..25098292, 25098395..25098532,25099388..25099579,25099678..25099869, 25099986..25100114,25100200..25100313,25100411..25100750, 25100873..25101101,25101195..25101417)) /locus_tag="TCM_014910" /note="dbxref frave:gene04794; paralog of Thecc1EG005611t1" /codon_start=1 /product="Ccr4-not transcription complex, putative" /protein_id="EOY22865.1" /db_xref="TAIR:AT1G02080.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RD55" /translation="MQKKQYMLDLFSAVFSCLLDQPNFSTVFCEAFRNLIISKKFLRD FCNELQLSVFEKVALGLALADSENAEVRTTGQDFSIGLIEELCGNPASVDSVEEIQNV CLFLYQSEGLIKYVDSFMQMVALKYPKERTPLILVPWLKDDVKEDRLPRNLDMFQSCN ENDFDFLLVEMESETSMADIMREVGYRCTTDSTHCKEVLSNFLPLNEVTLSRILSTVA RTYTGLKDSQLSHSIFCSAIGSSAAFDKSCPGSWNVDVLVDSIKQLAPGTNWNSVMEH LDHEGFYIPNSQAFSIFMSIYACACQDPFPLHAVCGSVWKNVDGHLSFLRYAVSAPLE IFTFEHSVRKLAYVEACDHHKLQAIQGNHAWLSLDLFDVLCQLAERGCANSVQAIIEY PLKHCPEVLLLGIAQINTAYNLLQHDVSSTIFPIVVEKSMGSLILHLWHSNSKFVARG FMDMIKADESSIIGMLAICHEQKILSTFLEQIPFSFSIRLAAFASQKEYLCLEKWLND NLNANKDIFVEECLKFWKEISLDAAEDMSPDLFHYPSTVENIYSKTSSTFLKVFQANI EQITSDHLAKELKRLNRASMHFKPQLQNVGTSDSSISCGYANDIEAEAGSYLYQMFSG QMPITVMIQMLSQFKKSSKKREQLIFEHVIQNLLDEYRFFPRYPEKQLNIVAILFGSL IKHRLVTKLRLVVALNSVLDALCKPTDSKIFLFGTKALEQFLDRLVELPQYCSHILQI SHLHGTHPELVDFVERALARISSSSLGKDEENTYVPHDGFTAATSESSEPFNENMSLL TNSIGKMQQRYEEVLGDRIKTSMTSSICMKPDLPQSVHPSSGFVNDVASCQNTVSSQK AMAVTPNASDFLHSSRRVTSTRFGSALNIETLIAADEKRNTPLKTPASNVQDKIFFMI NNISSSNVDAKVKKFTEILNEQYYPWFAQYMVMRRASIEPNFHDLYLEFLKKVNSKIL NEEIVKAAYDNCKVILRSEHIRSSSEERSLLKNLGSWLGKFTVGRNQVLRAREIDPKA LIIEAYERGLMIAVIPFTSKILEPCRSSRAYKPPNPWTMAILGLLAEIYAFPNLKMNL KFDIEVLFKNLGVDMKKANPTSLLKNRLRKVEGNPDFSKKDVGASQPPVVTGINSEIK STLNKVYLQHEIVNTSHSDDQLELASRIADIGSQIIFNEELSTLGLHHLLRVVPIAME RAIKELLSLVVQRIVLIAIQTTKEVVLKDYAMESDETCIYEAAHSMVASLAGSLAHVT CKETLRTSISRQLRDSFQGLNAPNEHLEQAVALVINDNLDLGCAVIEHAAVQKALQTI DCEITQQLSVRRKPREGIDPSYYDANINAQGPMTVTTESPLLRPGHISHSQQQVYEEF VHVFRKNQAGQNSNVVHASSAAPGQLNRGSCLSGMDGVNYPLDLISEEIDANRPVANQ SSLSSLSPTAAASEVHSEEELRATAESLPTTPIDQLGSGILEPSLSMSDVLEKYQLIS QKLEILLTKESVEEEIDRVVFQIPKIILKCVSRDEAALAIAQKVFKSLYEKASSSSHV GLHISILAAIRDVCKLVVKEVTSWVIYSDEDRKFNTNIIVGLMHKGLLNLAEYNKHMA KLIDAGKNKTATEFAISLLETLLIQESSLTLSELPNLINSLAKLAARPGSPESLKKLL EIAKNPPESASSPSGNTVGKEDRTKHARGKKNSDYSMTSRDGNVNTESVSADLATFYD QVSVLFTEWYQTYILPGANDAACAYFVSKLQQNGFLNGGDVSDRFFRFLMGHSVAHCL SSERIGSSLSLQSPQTAQDLSFLAVDAYARLVVVILKYHATEHLLSKIFQLTVNVIKR NAEEKKASFNPRPYFRLFVNWLFDLVSPYAVLDAANFQVLIAFAETFHAFQPLKVPAF SFAWLELISHKHFMPKLLTVNAPKGWVYGQLLLVDLLKFMEPYLRNAKLEKAIKHLYE ETLKVLFVLLRDFPEFLVSYHFSFCDVIPSSCIQMRSIILSAYPCNMQLPDTSTPNLK IDLLQEMHIPPCVFSEVDAALGAKQMKNDVDEYLKTGWQASPFLSELKEKLLLPQDEA AQAGTRYDVPVINSLVLYVGMQTIQQSQKKTTPSLAQQMTCNDRMQLYAMGPVLALFQ TLIMDLDTEGRYLVLNAIANQLRYPNSHTHLYSFVMLYLFNEAKQEIIQEQITRVLLE RCVVNPHPWGLLTTIIELIKNPQYNFWNRAFIKCNPDVNILLKSISIEARVDWIWRLL LRRDI" mobile_element complement(25108238..25109182) /note="source:CACAO_Helitron_E81_scaffold_3 2557 3484" /mobile_element_type="transposon:Helitron" mobile_element 25110938..25111108 /note="source:INTACT164_F159_scaffold_7-int 10076 10245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25111109..25111313) /note="source:INTACT164_F159_scaffold_7-int 11141 11345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25111304..25111698 /note="source:INTACT164_F159_scaffold_7-int 10072 10490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25111694..25112543) /note="source:INTACT164_F159_scaffold_7-int 9611 10454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25112553..25113243 /note="source:INTACT164_F159_scaffold_7-int 597 1291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25113862..25113883) /note="source:INTACT415F_F22_scaffold_4-int 2210 2249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25113884..25113943 /note="source:CACAO_on_S_E46_scaffold_2 5224 5287" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25113896..25113965) /note="source:CACAO_PIF_E144_scaffold_10 6000 6067" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25113915..25113972 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5681 5737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25113966..25113976) /note="source:INTACT415F_F22_scaffold_4-int 2186 2209" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25114035..25119299) /locus_tag="TCM_014912" /note="dbxref CacaoGD:Thecc1EG014912" mRNA complement(join(25114035..25114381,25115711..25116250, 25116645..25119299)) /locus_tag="TCM_014912" /product="Leucine-rich repeat receptor-like protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037047t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10780.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS complement(join(25115949..25116250,25116645..25119174)) /locus_tag="TCM_014912" /note="paralog of Thecc1EG037047t1" /codon_start=1 /product="Leucine-rich repeat receptor-like protein kinase family protein" /protein_id="EOY22866.1" /db_xref="Phytozome:POPTR_0003s10780.1" /db_xref="TAIR:AT4G08850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H078" /translation="MANYQEKYLSLTLFIALLALPCNAISVPNREAEALLKWKESLGN QSILQSWVTPASANASTQSPCRWRGITCNNAGNVIAINLAYTGLKGTVENLDFFSFPN LLRLDLKVNQLSGKIPSNIGLLSKLQFLDLSTNSLNSELPVSLANLTQVYELDISRNN ITGELDPRLFPDGTSRSKTGLISLKRFLLQDTLLSGRIPDEIGNLQHLSLLALDGSHF YGPIPPSLGNLSSLTVLRLSSLQLSGNIPVSFGTLSKLTVLYLHINHLSGFVPEELGN ISSLVVLHLAENNFSGHLPPEVCGGGKLVNFSASFNNFSGPIPKSLKNCKTLYRVRLE YNQLTGNIAQDFGVYPNLTYIDLSYNKLSGELSPNWGECLNLTLLNAAGNMIRGKIPD EITQLNQLMELDLSSNQISGIIPAQVGKLSKLLSLSLKDNKLSGPIPAGIGGLPNLQS LDLSTNMLRGPIPYQLGDCFKLQNLRLNENHLNGTIPYQIGNLVALQDILDFSYNSLS GEIPSQLGKLTTLENLSLSHNNLTGKIPSSLSNLRSLVAVNLSYNNLEGPLPNSNIFR SAQPEAFSKNKDLCGEREGLKPCSPTSTEKKSGNDKQKVVVIVVASLASISIFLIVCI WILAFRHRRSVNQSQIEGREKRENLFSLGHFNGKFMYKDILEATKNFDETCCIGVGGF GKVYKAEMPDGQVFAVKKLSSHDEMEIGEVKSFKNEVAALTEIRHRNIVKLYGFCSEK RQFFLVYEFMERGSLAKILSNDVGAKELDWTKRIRVIKGVAHALSYMHHDCVPPIIHR DISSKNILLSSEFEACVSDFGTARLLTHDSSNWTAVAGTYGYVAPELAYSMAVTEKCD AYSFGVLALEVLMGKHPGELISYLHSFSDPRIGLADVLDPRLSPPIGRKLEDELSFML NLAILCSHANPQSRPTMRSVSQQLEAGCF" gene complement(25122234..25122907) /locus_tag="TCM_014913" /note="dbxref CacaoGD:Thecc1EG014913" mRNA complement(join(25122234..25122631,25122765..25122907)) /locus_tag="TCM_014913" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9015t1" CDS complement(join(25122564..25122631,25122765..25122885)) /locus_tag="TCM_014913" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22867.1" /translation="MASKTCLSQWAVLFIVILLLLSSAMASRDAVTRSSTLHSSYEKG RGLASKPARDDPWDHNYR" gene complement(25123571..25126987) /locus_tag="TCM_014914" /note="dbxref CacaoGD:Thecc1EG014914" mRNA complement(join(25123571..25124174,25126561..25126651, 25126777..25126987)) /locus_tag="TCM_014914" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS complement(join(25124111..25124174,25126561..25126651, 25126777..25126945)) /locus_tag="TCM_014914" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22868.1" /translation="MCSIIWCKHSLSESRKMASKTCLSQWEVLFIVMLLLLSSAMASR DIVTRSSNLLSSYAKDGRLMSESDTAGGPWGHNYCTPPKIRPIADAIVDVTLTWHCLL TWNVR" mobile_element complement(25124525..25124839) /note="source:INTACT639F_F363_scaffold_5-int 8237 8572" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25124840..25124895 /note="source:CACAO_on_E683_scaffold_9 1239 1566" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25124871..25125854 /note="source:CACAO_on_E683_scaffold_9 1323 2320" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(25127981..25139178) /locus_tag="TCM_014915" /note="dbxref CacaoGD:Thecc1EG014915" mRNA complement(join(25127981..25128951,25129976..25130050, 25130652..25130877,25131041..25131129,25131205..25131298, 25131453..25131637,25131716..25131883,25131954..25132094, 25133503..25133721,25133854..25133970,25135268..25135364, 25135609..25135700,25135856..25135918,25136150..25136209, 25136315..25136479,25136555..25136740,25136833..25137123, 25137228..25137371,25137502..25138182,25138345..25139178)) /locus_tag="TCM_014915" /product="Structural maintenance of chromosomes (SMC) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00710.1" /inference="similar to AA sequence:ricco:30147.m014233" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc188t10" mobile_element 25128053..25128136 /note="source:scaffold_5_CACTA_0585 6119 6192" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25128086..25128149 /note="source:INTACT1373F_F385_scaffold_8-int 6935 6997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25128105..25128155) /note="source:CACAO_M_E47_F305_scaffold_1 1276 1323" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(25128341..25128951,25129976..25130050, 25130652..25130877,25131041..25131129,25131205..25131298, 25131453..25131637,25131716..25131820,25131954..25132094, 25133503..25133721,25133854..25133970,25135268..25135364, 25135609..25135700,25135856..25135918,25136150..25136209, 25136315..25136479,25136555..25136740,25136833..25137123, 25137228..25137371,25137502..25138182,25138345..25139003)) /locus_tag="TCM_014915" /product="Structural maintenance of chromosomes 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00710.1" /inference="similar to AA sequence:ricco:30147.m014233" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc308t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc188t10" CDS complement(join(25128832..25128951,25129976..25130050, 25130652..25130877,25131041..25131129,25131205..25131298, 25131453..25131637,25131716..25131820,25131954..25132094, 25133503..25133721,25133854..25133970,25135268..25135364, 25135609..25135700,25135856..25135918,25136150..25136209, 25136315..25136479,25136555..25136740,25136833..25137123, 25137228..25137371,25137502..25138182,25138345..25138662)) /locus_tag="TCM_014915" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014233" /codon_start=1 /product="Structural maintenance of chromosomes 2 isoform 2" /protein_id="EOY22870.1" /db_xref="TAIR:AT5G62410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C5Y4" /translation="MYIKEICLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDS ICFVLGITNLQQVRAANLQELVYKQGQAGITKATVSIIFDNSDRSRSPLGYEDHSEIT VTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPE ILSMLEEAAGTRMYETKKEFALKTLEKKQSKVDEINKLLDQEILPALEKLRKERMQYM QWANGNAELDRLKRFCVAFEYVQAERIRDSAVGEVERVKAKITEIDNGAERTKVEIQD METNISKLTADKEATMGGEVKTLSDEVDLLSKNLVQEVSVLNSKEDTLKGEKENAEKL IQNIEDLRQSIEEKAIAVQKCEEGAADLKKRVEDLSKSLEEHEKEYQAVLAGKSSGNE DKCLEDQLGDAKVAVGAAETELKQLKTKISHCEKELGEKTCQLMSKREEAVDVENELN SRRKDVGKIKIELESLPYKEGQMEALQKDRASELELIQKLKDGVRDLSAQLANVQFTY HDPVKNFDRSKVKGVVAKLIKVKDSSTMTALEVTAGGKLFNVVVDTENTGKQLLQNGD LRRRVTIIPLNKIQPNTVPPRVQQAAIGLVGKENAKLALSLVGYDKELESAMEYVFGA TFVCKTTDAAKEVAFNREIRTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQLHDLAES ESKLSVHQKRLSEIEAKMADLLPLQKKFMDLKAQLELKVHDLSLFQNRAEKNEHHKLA EMVKSIEQELQEAKSAVQEKEILYEKHVSTVLELEKSIREHDNNREGRLKDLERKIKA TKARMQSASKDLKGHENERERIVMEREAVIQEQASLESQLASLRTQINNVNLEVEEQM AKMKECDSQISSILKEQQKLQQKLSEIKLERKKLENEVKQMEMEQKDCSTKVDKLIEK HAWIATERQLFGRGGTDYDFASRDPHKAREELDKLQAEQSGLEKRVNKKVMAMFEKAE DEYNDLMSKKNTVENDKSKIKKTIEELDEKKKETLKVTWVKVNNDFGSIFSTLLPGTM AKLEPPEGSSVLDGLEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYI LDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQ RTVASKPSR" CDS complement(join(25128832..25128951,25129976..25130050, 25130652..25130877,25131041..25131129,25131205..25131298, 25131453..25131637,25131716..25131883,25131954..25132094, 25133503..25133721,25133854..25133970,25135268..25135364, 25135609..25135700,25135856..25135918,25136150..25136209, 25136315..25136479,25136555..25136740,25136833..25137123, 25137228..25137371,25137502..25138182,25138345..25138662)) /locus_tag="TCM_014915" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014233" /codon_start=1 /product="Structural maintenance of chromosomes (SMC) family protein isoform 1" /protein_id="EOY22869.1" /db_xref="TAIR:AT3G47460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SN90" /translation="MYIKEICLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDS ICFVLGITNLQQVRAANLQELVYKQGQAGITKATVSIIFDNSDRSRSPLGYEDHSEIT VTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPE ILSMLEEAAGTRMYETKKEFALKTLEKKQSKVDEINKLLDQEILPALEKLRKERMQYM QWANGNAELDRLKRFCVAFEYVQAERIRDSAVGEVERVKAKITEIDNGAERTKVEIQD METNISKLTADKEATMGGEVKTLSDEVDLLSKNLVQEVSVLNSKEDTLKGEKENAEKL IQNIEDLRQSIEEKAIAVQKCEEGAADLKKRVEDLSKSLEEHEKEYQAVLAGKSSGNE DKCLEDQLGDAKVAVGAAETELKQLKTKISHCEKELGEKTCQLMSKREEAVDVENELN SRRKDVGKIKIELESLPYKEGQMEALQKDRASELELIQKLKDGVRDLSAQLANVQFTY HDPVKNFDRSKVKGVVAKLIKVKDSSTMTALEVTAGGKLFNVVVDTENTGKQLLQNGD LRRRVTIIPLNKIQPNTVPPRVQQAAIGLVGKENAKLALSLVGYDKELESAMEYVFGA TFVCKTTDAAKEVAFNREIRTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQLHDLAES ESKLSVHQKRLSEIEAKMADLLPLQKKFMDLKAQLELKVHDLSLFQNRAEKNEHHKLA EMVKSIEQELQEAKSAVQEKEILYEKHVSTVLELEKSIREHDNNREGRLKDLERKIKA TKARMQSASKDLKGHENERERIVMEREAVIQEQASLESQLASLRTQINNVNLEVEEQM AKVGSVKKNRDQLQSELDSIRLKMKECDSQISSILKEQQKLQQKLSEIKLERKKLENE VKQMEMEQKDCSTKVDKLIEKHAWIATERQLFGRGGTDYDFASRDPHKAREELDKLQA EQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNTVENDKSKIKKTIEELDEKKKETLKV TWVKVNNDFGSIFSTLLPGTMAKLEPPEGSSVLDGLEVCVAFGGVWKQSLSELSGGQR SLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEG MFNNANVLFRTKFVDGVSTVQRTVASKPSR" gene complement(25140409..25146414) /locus_tag="TCM_014916" /note="dbxref CacaoGD:Thecc1EG014916" mRNA complement(join(25140409..25141059,25141270..25141379, 25141698..25141787,25141890..25141988,25142075..25142188, 25142368..25142486,25143496..25143541,25143939..25143959, 25144333..25144414,25144584..25144663,25144761..25144847, 25145415..25145600,25145880..25146414)) /locus_tag="TCM_014916" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00700.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00700.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b014406t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc705t4" mRNA complement(join(25140409..25141059,25141270..25141379, 25141698..25141787,25141890..25141988,25142075..25142188, 25142368..25142486,25143496..25143541,25143939..25143959, 25144333..25144414,25144584..25144663,25144761..25144847, 25144989..25145054,25145415..25145600,25145880..25146414)) /locus_tag="TCM_014916" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00700.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00700.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc705t4" mRNA complement(join(25140543..25141059,25141270..25141379, 25141698..25141787,25141890..25141988,25142089..25142188, 25142368..25142486,25143496..25143541,25143939..25143959, 25144333..25144414,25144584..25144663,25144761..25144847, 25144989..25145054,25145415..25145600,25145880..25146327)) /locus_tag="TCM_014916" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00700.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00700.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6252t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc705t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6252t1" CDS complement(join(25140810..25141059,25141270..25141379, 25141698..25141787,25141890..25141988,25142075..25142188, 25142368..25142486,25143496..25143541,25143939..25143959, 25144333..25144414,25144584..25144663,25144761..25144847, 25145415..25145600,25145880..25146296)) /locus_tag="TCM_014916" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /protein_id="EOY22873.1" /db_xref="Phytozome:POPTR_0001s00700.1" /db_xref="TAIR:AT3G47450.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q66GP9" /translation="MALKTISTFLSPLSLPNHHNFSNFNTKSRNIYRKPTLVCCKSTQ SQTQNRFPLSETQLLSSEPDGTGAAAPTRGDRFLERQHADEAAKLVIKEIKKSKKKKK KVLKVNTAVASCYGCGAPLQTSELDAPGYVDTDTYELKKKHHQLRTVLCGRCRLLSHG QMITAVGGNGGYPGGKQFVSADELREKLSSLRHEKALIVKLVDIVDFNGSFVSRVRDL TGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLVGIAGVA SEIQKEKKGRDVYILGSANVGKSAFISALLKMMAQRDPAAAAAQKYKPIQSAVPGTTL GPIQIDAFLGGGKLFDTPGVHLHHRQAAVVHSEDLPVLAPQSRLRGQSFPVASKNGMA EKFNSIGLKGFSIFWGGLVRIDVLKVLPETCLTFYGPKRLQIHVVPTDEADEFYRKEL GVKLTPPTGKDKADEWRGLETMQQLQIKFEDPERPASDVAISGLGWIAIEPKRKSLGI SDNNFAETIKELHLAVGVPRPVEIFVRPPIPVGKAGAEWYQYRELTEKEEEVRPKWYF " CDS complement(join(25140810..25141059,25141270..25141379, 25141698..25141787,25141890..25141988,25142075..25142188, 25142368..25142486,25143496..25143541,25143939..25143959, 25144333..25144414,25144584..25144663,25144761..25144847, 25144989..25145054,25145415..25145600,25145880..25146296)) /locus_tag="TCM_014916" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY22871.1" /db_xref="Phytozome:POPTR_0001s00700.1" /db_xref="TAIR:AT3G47450.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q66GP9" /translation="MALKTISTFLSPLSLPNHHNFSNFNTKSRNIYRKPTLVCCKSTQ SQTQNRFPLSETQLLSSEPDGTGAAAPTRGDRFLERQHADEAAKLVIKEIKKSKKKKK KVLKVNTAVASCYGCGAPLQTSELDAPGYVDTDTYELKKKHHQLRTVLCGRCRLLSHG QMITAVGGNGGYPGGKQFVSADELREKLSSLRHEKALIVKLREMILVIMISQEVQLTN RDYLQVDIVDFNGSFVSRVRDLTGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK KLNVLSVHLTSSKSLVGIAGVASEIQKEKKGRDVYILGSANVGKSAFISALLKMMAQR DPAAAAAQKYKPIQSAVPGTTLGPIQIDAFLGGGKLFDTPGVHLHHRQAAVVHSEDLP VLAPQSRLRGQSFPVASKNGMAEKFNSIGLKGFSIFWGGLVRIDVLKVLPETCLTFYG PKRLQIHVVPTDEADEFYRKELGVKLTPPTGKDKADEWRGLETMQQLQIKFEDPERPA SDVAISGLGWIAIEPKRKSLGISDNNFAETIKELHLAVGVPRPVEIFVRPPIPVGKAG AEWYQYRELTEKEEEVRPKWYF" CDS complement(join(25141720..25141787,25141890..25141988, 25142089..25142188,25142368..25142486,25143496..25143541, 25143939..25143959,25144333..25144414,25144584..25144663, 25144761..25144847,25144989..25145054,25145415..25145600, 25145880..25146296)) /locus_tag="TCM_014916" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY22872.1" /db_xref="Phytozome:POPTR_0001s00700.1" /db_xref="TAIR:AT3G47450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUI9" /translation="MALKTISTFLSPLSLPNHHNFSNFNTKSRNIYRKPTLVCCKSTQ SQTQNRFPLSETQLLSSEPDGTGAAAPTRGDRFLERQHADEAAKLVIKEIKKSKKKKK KVLKVNTAVASCYGCGAPLQTSELDAPGYVDTDTYELKKKHHQLRTVLCGRCRLLSHG QMITAVGGNGGYPGGKQFVSADELREKLSSLRHEKALIVKLREMILVIMISQEVQLTN RDYLQVDIVDFNGSFVSRVRDLTGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK KLNVLSVHLTSSKSLVGIAGVASEIQKEKKGRDVYILGSANVGKSAFISALLKMMAQR DPAAAAAQKYKPIQSAVPGTTLGPIQIDAFLGGGKLFDTPGVHLHHRQAAVVHSEDLP VLAPQSRLRGGLQKWDGREIQLHWIKRVLNILGWACQNRCLEGSARNVFNILWTKEVA DSCCTH" gene complement(25146599..25148569) /locus_tag="TCM_014917" /note="dbxref CacaoGD:Thecc1EG014917" mRNA complement(join(25146599..25147165,25147846..25148096, 25148171..25148569)) /locus_tag="TCM_014917" /product="Tonoplast intrinsic protein 5,1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028837t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00690.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc4278t1" CDS complement(join(25146779..25147165,25147846..25148096, 25148171..25148315)) /locus_tag="TCM_014917" /note="paralog of Thecc1EG028837t1" /codon_start=1 /product="Tonoplast intrinsic protein 5,1" /protein_id="EOY22874.1" /db_xref="Phytozome:POPTR_0001s00690.1" /db_xref="TAIR:AT3G47440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ATL2" /translation="MLLGEMAPALLTARFQESVTANALRAYLAEFISTFFYVFAVIGS AMASRKLISDAATDPSSLVLVAIANTFALSSSVYIAANVSGGHVNPAVTFGMAVGGHI SVPTAMFYWVSQMLASVMACLLLKVTTVGQHVPTFTIANEMTGFGASMVEGVLAFALV YTVYAAGDPRTGPLGVIGPLAIGLMAGAMVLAAGPFSGGSINPALAFGSAVVAGRFKN QAVYWVGPLIGAAVAGLLYDNVVFPGQAASVSGRGNSEGIGL" mobile_element complement(25150813..25151693) /note="source:INTACT135F_F90_scaffold_2-int 13196 14004" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25151391..25151884) /note="source:scaffold_9_CACTA_0932 2779 3383" /mobile_element_type="transposon:TIR/CACTA" gene complement(25152243..25153138) /locus_tag="TCM_014918" /note="dbxref CacaoGD:Thecc1EG014918" mRNA complement(25152243..25153138) /locus_tag="TCM_014918" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s17780.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17890t00001" CDS complement(25152451..25152807) /locus_tag="TCM_014918" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22875.1" /translation="MARGIPTYDGDGSSYDCGGGSGRQYITTQCYPSASSSFPRVDSF YYSSLNRGTVGDVFFGTDDIRDTRDSMYKEDVMESYCRETAIKSLRRQSKKRSISTFG CVEFLKLLRCCCRCII" gene complement(25154133..25155020) /locus_tag="TCM_014919" /note="dbxref CacaoGD:Thecc1EG014919" mRNA complement(join(25154133..25154600,25154701..25155020)) /locus_tag="TCM_014919" /product="Dynein light chain type 1 family protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031453t1" /inference="similar to AA sequence:ricco:30147.m014228" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14691t00001" CDS complement(join(25154409..25154600,25154701..25155000)) /locus_tag="TCM_014919" /note="dbxref ricco:30147.m014228; paralog of Thecc1EG031453t1" /codon_start=1 /product="Dynein light chain type 1 family protein" /protein_id="EOY22876.1" /db_xref="TAIR:AT1G23220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVE3" /translation="MERQRSDNGRRNRQPKAKDSSQCRIQRASSLPPIARAPPPPANE LKLAAIAINLNVRLRSADMALTMQERAIRRARALVDANQDKNKRPNPTQLAMCLKKEF DALYGPAWHCVVGKSFGSFVTHASGGFLYFSVDKLCFLLFKTEVQPVVKPPTLPRLKI NNA" gene complement(25156447..25159686) /locus_tag="TCM_014920" /note="dbxref CacaoGD:Thecc1EG014920" mRNA complement(join(25156447..25157072,25157691..25157956, 25158282..25158396,25159141..25159686)) /locus_tag="TCM_014920" /product="Cell number regulator 6 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014227" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005629t1" /inference="similar to AA sequence:ricco:30147.m014227" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b014410t1a2; alternateUTRof:Thecc1EG014920t1; inference alignment:Newbler:10:TSA:cgbaP1_g04680t00001" mRNA complement(join(25156528..25157072,25157691..25157956, 25158282..25158396,25159141..25159242,25159396..25159471)) /locus_tag="TCM_014920" /product="Cell number regulator 6 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014227" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005629t1" /inference="similar to AA sequence:ricco:30147.m014227" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04680t00001; inference alignment:Newbler:10:TSA:cgbaP1_g04680t00001" CDS complement(join(25156854..25157072,25157691..25157956, 25158282..25158396,25159141..25159242)) /locus_tag="TCM_014920" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014227; paralog of Thecc1EG005629t1" /codon_start=1 /product="Cell number regulator 6 isoform 1" /protein_id="EOY22877.1" /db_xref="TAIR:AT2G45010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B6SGC5" /translation="MEDAQSRYVKLTKDQAPLEDIRPGELNQPIDVPQLHVRKCNECG QPLPENFEPPAVEPWTTGIFGCAEDTESCWTGLFCPCVLFGRNIENLRDDTPWTTPCI CHAICVEGGIALAAATAVFHGIDPKTSFLICEGLLFAWWMCGIYTGLARQSLQKKYHL KNSPCDPCMVHCCMHWCALCQEHREMKGRLSDNFVMPMTIVNPPPVQEMNSASENHDS TSPSGTSTNLEMQAL" CDS complement(join(25156854..25157072,25157691..25157956, 25158282..25158396,25159141..25159242)) /locus_tag="TCM_014920" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014227; paralog of Thecc1EG005629t1" /codon_start=1 /product="Cell number regulator 6 isoform 1" /protein_id="EOY22878.1" /db_xref="TAIR:AT2G45010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B6SGC5" /translation="MEDAQSRYVKLTKDQAPLEDIRPGELNQPIDVPQLHVRKCNECG QPLPENFEPPAVEPWTTGIFGCAEDTESCWTGLFCPCVLFGRNIENLRDDTPWTTPCI CHAICVEGGIALAAATAVFHGIDPKTSFLICEGLLFAWWMCGIYTGLARQSLQKKYHL KNSPCDPCMVHCCMHWCALCQEHREMKGRLSDNFVMPMTIVNPPPVQEMNSASENHDS TSPSGTSTNLEMQAL" mRNA complement(join(25157573..25157956,25158282..25158396, 25159141..25159242,25159396..>25159510)) /locus_tag="TCM_014920" /product="Cell number regulator 6 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014227" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005629t1" /inference="similar to AA sequence:ricco:30147.m014227" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc766t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1632t4; inference alignment:Newbler:10:TSA:cgbaP1_g04680t00001" CDS complement(join(25157652..25157956,25158282..25158396, 25159141..25159242,25159396..>25159509)) /locus_tag="TCM_014920" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014227; paralog of Thecc1EG005629t1" /codon_start=1 /product="Cell number regulator 6 isoform 3" /protein_id="EOY22879.1" /db_xref="TAIR:AT2G45010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L3T0" /translation="SFTSCCTLFSEILIIAILPNFHILSSLETSPKISFITEMEDAQS RYVKLTKDQAPLEDIRPGELNQPIDVPQLHVRKCNECGQPLPENFEPPAVEPWTTGIF GCAEDTESCWTGLFCPCVLFGRNIENLRDDTPWTTPCICHAICVEGGIALAAATAVFH GIDPKTSFLICEGLLFAWWMCGIYTGLARQSLQKKYHLKVVSKLTLPICTY" mobile_element complement(25160214..25160357) /note="source:CACAO_Mutator_E39_scaffold_1 3987 4139" /mobile_element_type="transposon:TIR/Mutator" gene complement(25161484..25162897) /locus_tag="TCM_014921" /note="dbxref CacaoGD:Thecc1EG014921" mRNA complement(25161484..25162897) /locus_tag="TCM_014921" /product="Peroxisomal membrane protein 11B" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00650.1" /inference="similar to AA sequence:Phytozome:GSVIVT01018663001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6248t1" CDS complement(25161995..25162675) /locus_tag="TCM_014921" /codon_start=1 /product="Peroxisomal membrane protein 11B" /protein_id="EOY22880.1" /db_xref="Phytozome:GSVIVT01018663001" /db_xref="TAIR:AT3G47430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STY0" /translation="MNDTVDKLVIFLAKRDGIDKLVKTFQYVSKLVHWQVETTHPDIA NRFKQWEVASGLSRKAFRSGRFLTGFNALRRNPGSSPTFKFLAVLANAGEMVYFFFDH FLWLSRIGTLDAKLARRMSFISAFGESFGYIFFIVSDFIIMKEGLEAERKLIALAEED SKDAKVKIRSIRADRVMRLMAVAANIADLIIALADIEPNPFCNHAVTLGISGLVSAWA GWYRNWPS" mobile_element 25163283..25163377 /note="source:scaffold_3_CACTA_0377 4203 4298" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25164007..25164106) /note="source:scaffold_4_CACTA_0511 5713 5813" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25164030..25164140 /note="source:CACAO_M_S_E16386_F9_scaffold_2 2067 2176" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25164595..25170010 /locus_tag="TCM_014922" /note="dbxref CacaoGD:Thecc1EG014922" mRNA join(25164595..25164994,25165098..25165226, 25165521..25165560,25167565..25167640,25167744..25167944, 25168183..25168395,25168489..25168884,25168983..25169042, 25169157..25169195,25169652..25169749,25169866..25170010) /locus_tag="TCM_014922" /product="LUC7 N_terminus domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g35800.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400026101" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00664t00002" mRNA join(25164595..25164994,25165098..25165226, 25165521..25165560,25167565..25167640,25167744..25167944, 25168183..25168395,25168489..25169790) /locus_tag="TCM_014922" /product="LUC7 N_terminus domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g35800.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400026101" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:PASA:2:TSA:puevd3b014412t1a2; alternateUTRof:Thecc1EG014922t1; inference alignment:Newbler:10:TSA:cgbaL_g00664t00002" CDS join(25164952..25164994,25165098..25165226, 25165521..25165560,25167565..25167640,25167744..25167944, 25168183..25168395,25168489..25168842) /locus_tag="TCM_014922" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="LUC7 N_terminus domain-containing protein isoform 1" /protein_id="EOY22881.1" /db_xref="Phytozome:PGSC0003DMP400026101" /db_xref="TAIR:AT5G51410.3" /db_xref="UniProtKB/TrEMBL:UniRef50_P94088" /translation="MDAQRALLDELMGTARNLTEEEKKGYREIRWDDKEVCGFYMVRF CPHDLFVNTRSDLGPCPRVHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDR RVRRGRERLAQEVEPAPPAPVSAEKSEQLSVLEEKIKNLLEQVENLGESGKVDEAEAL MRKVEVLNAEKTALTQQPQNDKVLMLAQEKKMALCEVCGSFLVANDAAERTQSHVTGK QHIGYGMVRDFISEFKAAKEKAREEERLAREKEVEERRKQREKEYESRRRRSDSDDRD KYRDRDKDRDRYRERDLERERSREWNGRGSRDGERDWRYKNGRDGGRDRHKDRSRSRS PGRHSHRRSSRSPGRRY" CDS join(25164952..25164994,25165098..25165226, 25165521..25165560,25167565..25167640,25167744..25167944, 25168183..25168395,25168489..25168842) /locus_tag="TCM_014922" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="LUC7 N_terminus domain-containing protein isoform 1" /protein_id="EOY22882.1" /db_xref="Phytozome:PGSC0003DMP400026101" /db_xref="TAIR:AT5G51410.3" /db_xref="UniProtKB/TrEMBL:UniRef50_P94088" /translation="MDAQRALLDELMGTARNLTEEEKKGYREIRWDDKEVCGFYMVRF CPHDLFVNTRSDLGPCPRVHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDR RVRRGRERLAQEVEPAPPAPVSAEKSEQLSVLEEKIKNLLEQVENLGESGKVDEAEAL MRKVEVLNAEKTALTQQPQNDKVLMLAQEKKMALCEVCGSFLVANDAAERTQSHVTGK QHIGYGMVRDFISEFKAAKEKAREEERLAREKEVEERRKQREKEYESRRRRSDSDDRD KYRDRDKDRDRYRERDLERERSREWNGRGSRDGERDWRYKNGRDGGRDRHKDRSRSRS PGRHSHRRSSRSPGRRY" mRNA join(25165786..25165845,25167565..25167640, 25167744..25167944,25168183..25168395,25168489..25169528) /locus_tag="TCM_014922" /product="LUC7 N_terminus domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g35800.1" /inference="similar to AA sequence:ricco:30147.m014225" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6333t5; inference alignment:Newbler:10:TSA:cgbaL_g00664t00002" CDS join(25165814..25165845,25167565..25167640, 25167744..25167944,25168183..25168395,25168489..25168842) /locus_tag="TCM_014922" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014225" /codon_start=1 /product="LUC7 N_terminus domain-containing protein isoform 3" /protein_id="EOY22883.1" /db_xref="TAIR:AT5G51410.3" /db_xref="UniProtKB/TrEMBL:UniRef50_P94088" /translation="MLRCCWFFFLSFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRV RRGRERLAQEVEPAPPAPVSAEKSEQLSVLEEKIKNLLEQVENLGESGKVDEAEALMR KVEVLNAEKTALTQQPQNDKVLMLAQEKKMALCEVCGSFLVANDAAERTQSHVTGKQH IGYGMVRDFISEFKAAKEKAREEERLAREKEVEERRKQREKEYESRRRRSDSDDRDKY RDRDKDRDRYRERDLERERSREWNGRGSRDGERDWRYKNGRDGGRDRHKDRSRSRSPG RHSHRRSSRSPGRRY" gene complement(25170033..25175287) /locus_tag="TCM_014923" /note="dbxref CacaoGD:Thecc1EG014923" mRNA complement(join(25170033..25170509,25170938..25171270, 25171491..25172151,25172488..25172686,25172803..25172948, 25173357..25173637,25173748..25173849,25173946..25174065, 25174174..25174263,25174587..25175287)) /locus_tag="TCM_014923" /product="Oligomeric Golgi complex component-related / COG complex component-related" /inference="alignment:exonerate- protein:2:ricco:30147.m014222" /inference="similar to AA sequence:ricco:30147.m014222" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6355t1" CDS complement(join(25170228..25170509,25170938..25171270, 25171491..25172151,25172488..25172686,25172803..25172948, 25173357..25173637,25173748..25173849,25173946..25174065, 25174174..25174263,25174587..25174871)) /locus_tag="TCM_014923" /note="dbxref ricco:30147.m014222" /codon_start=1 /product="Oligomeric Golgi complex component-related / COG complex component-related" /protein_id="EOY22884.1" /db_xref="TAIR:AT5G51430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B1Q4S9" /translation="MMLDLGPFSDEKFDPKKWINSACKSRHPQDSLDKHMVDLEMKLQ MVSEEIAASLEEQSAAALLRVPRASRDVLRLREDAVSLRISVAGILDKLKKAEGSSAE SIAALAKVDTVKQRMEAAYETLQDAAGLTQLSATVEDVFASGDLPRAAETLANMRHCL SAVGEVAEFANIRKQLEVLEDRLDTMVQPRLTDALSNRKIDVAQDLRGILIRIGRFKS LEMHYTKVHLKPIKQLWDDFDSKQRASKLANEKSEVERLSISNDLRSSSPTVFFSSWL PSFYDELLLYLEQEWKWCTVAFPDDYKTLVPKLLMETMAAVGSSFVSRINLATGEVVP ETKALAKGILDILSGDLPKGSKIQTKHLEALIELHNMTGIYARNIQHLFSESDLRVLM DTLKAVYFPYESFKQRYGQMERAILSSEISGVDLRGAVTRGVGAQGIELSETVRRMEE SIPQVIVLLEAAVERCISFTGGSEADELILALDDIMLQYISTLQETLKSLRAVCGVDH NNMGFDKKEGAQNSRKVDLISNEEEWSIVQGALQILTVADCLTSRSSVFEASLRATLA RLSTSLSVSVFGSSLDQNQLHITNDDGNGEPSLGGRAALDVAAVRLVDVPDKARKLFN LLDQSKDPRFHALPLASQRVAAFAETVNELVYDVLISKVRQRLSDVSRLPIWSAVEEQ SAFPLPTFSAYPQSYVTSVGEYLLTLPQQLEPLAEGISNSDASNEEAQFFATEWMFKV AEGATALYMEQLRGIQYITDRGAQQLSVDIEYLSNVLSALSMPIPPVLATFQTCFGTP RDQLKDLLKSDSGNQLDLPTANLVCKIRRVNLDQ" gene 25176004..25177110 /locus_tag="TCM_014924" /note="dbxref CacaoGD:Thecc1EG014924" mRNA join(25176004..25176386,25176487..25177110) /locus_tag="TCM_014924" /product="Mitochondrion-localized small heat shock protein 23.6, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015982t1" /inference="similar to AA sequence:Phytozome:Glyma12g01580.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05682t00001; inference alignment:Newbler:10:TSA:cgbaP1_g05682t00001" mRNA join(25176159..25176434,25176486..25177074) /locus_tag="TCM_014924" /product="Mitochondrion-localized small heat shock protein 23.6, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015982t1" /inference="similar to AA sequence:Phytozome:Glyma12g01580.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc39t12; inference alignment:Newbler:10:TSA:cgbaP1_g05682t00001" CDS join(25176170..25176386,25176487..25176905) /locus_tag="TCM_014924" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015982t1" /codon_start=1 /product="Mitochondrion-localized small heat shock protein 23.6, putative isoform 1" /protein_id="EOY22885.1" /db_xref="Phytozome:Glyma12g01580.2" /db_xref="TAIR:AT4G25200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGM9" /translation="MASSPALRRLVSSNILPSSMRVIRPIATSPYTSRLFNTNAMREF DDHGDERDLNDDRRQVRSLSRRGDGFFSDVFDPFSPTRSLSQVLNMMDQFMENPFLSA SRGMGGGHRRSWDAKETEDALNLRIDMPGVGKEDVKVSVEQNTLIIKGEAAKESEEEE SGGKYTSRIHLPEKIYKTDQIKAEMKNGVLKVVVPKVQEEERTDVIQVQIE" CDS join(25176309..25176434,25176486..25176905) /locus_tag="TCM_014924" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015982t1" /codon_start=1 /product="Mitochondrion-localized small heat shock protein 23.6, putative isoform 2" /protein_id="EOY22886.1" /db_xref="Phytozome:Glyma12g01580.2" /db_xref="TAIR:AT4G25200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P11890" /translation="MVTSVTSTMIDAKFVHSLAAAMVSSQVVVHRSVFSFQIPLFSDV FDPFSPTRSLSQVLNMMDQFMENPFLSASRGMGGGHRRSWDAKETEDALNLRIDMPGV GKEDVKVSVEQNTLIIKGEAAKESEEEESGGKYTSRIHLPEKIYKTDQIKAEMKNGVL KVVVPKVQEEERTDVIQVQIE" gene complement(25178057..25179595) /locus_tag="TCM_014925" /note="dbxref CacaoGD:Thecc1EG014925" mRNA complement(join(25178057..25178562,25178673..25178832, 25178926..25179595)) /locus_tag="TCM_014925" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400059373.2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400059373" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc7955t1" CDS complement(join(25178167..25178562,25178673..25178832, 25178926..25179248)) /locus_tag="TCM_014925" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY22887.1" /db_xref="Phytozome:PGSC0003DMP400059373" /translation="MHARFTKTFKVSPPLHFFLFSLSILISGSPKTKRRNQIKNFQNF SKLKKTRKGNKRSSCQGSPKVKKRRKSKTNLFPNIFSLPNELMTEVLARVAAYSFHDF FDVKLSCKVFHQIADDKYILQHVSLEKFPVTPWCSTKQSFFLEKCKRSGHPEALYREG VVEHFSFARVEEGLNCLNSAAKVGHLGASYVLGVILLCTEEPDQEQDGRRLLKLEKSK KGVRESRKKLNDTIRNIWLNNLLEGKPNCCPMRDQHRRRRGWPSDNEDDVDCEACGCD LEVIFVCNLLRGILTY" gene 25188427..25192061 /locus_tag="TCM_014926" /note="dbxref CacaoGD:Thecc1EG014926" mRNA join(25188427..25188677,25189655..25190733, 25191135..25192061) /locus_tag="TCM_014926" /product="Phosphate starvation-induced gene 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g35760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015879t1" /inference="similar to AA sequence:ricco:30147.m014220" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9035t1" mRNA join(25188454..25188677,25189836..25190733, 25191135..>25191559) /locus_tag="TCM_014926" /product="Phosphate starvation-induced gene 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g35760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015879t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s00630.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc917t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9035t1" CDS join(25189731..25190733,25191135..25191700) /locus_tag="TCM_014926" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014220; paralog of Thecc1EG015879t1" /codon_start=1 /product="Phosphate starvation-induced gene 3 isoform 1" /protein_id="EOY22888.1" /db_xref="TAIR:AT3G47420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C5L3" /translation="MGSPSELPAERSYNKPLGIRFLESTTKAKLSYKTYQAIVLIVTF FAYTSYHATRKTTSIVKSALDPQSSDVGLKFPWRITYISEPAESKRLSWVLGDGWAPF NGSDGTALLGELDVAFLAVYAFGMYFSGHLGDRMNLRIFLTVGMIGTGLFTALFGVGY WAKLHSFYYFLIVQMIAGLFQSTGWPSVVAVVGNWFGKKKRGLIMGIWNAHTSVGNIT GSLIASALLSYGWGWSFVVPGLIIAFLGLVVFLLLPVCPESVGADREEDEVDSPRKNG GGVTEPLLGSDTELKEKAVGFIEAWKIPGVAPFAFCLFFAKLVAYTFLYWLPYYISHT AIEGKYLSNETAGNMSTFFDVGGVLGGILAGHISDRLDARAITAATFMYCAIPALYFY RSYGHISLAMNIALMFISGMFVNGPYALITTAVSADLGTHSSLKGNSKALATVTAIID GTGSVGAAIGPLLTGYISAKSWSAVFTMLMGAALVAGLLLTRLVVAEVAARISESRSQ GGQESRSEAAELDV" CDS join(25190106..25190733,25191135..>25191559) /locus_tag="TCM_014926" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015879t2" /codon_start=1 /product="Phosphate starvation-induced gene 3 isoform 2" /protein_id="EOY22889.1" /db_xref="Phytozome:POPTR_0001s00630.1" /db_xref="TAIR:AT3G47420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C5L3" /translation="MYFSGHLGDRMNLRIFLTVGMIGTGLFTALFGVGYWAKLHSFYY FLIVQMIAGLFQSTGWPSVVAVVGNWFGKKKRGLIMGIWNAHTSVGNITGSLIASALL SYGWGWSFVVPGLIIAFLGLVVFLLLPVCPESVGADREEDEVDSPRKNGGGVTEPLLG SDTELKEKAVGFIEAWKIPGVAPFAFCLFFAKLVAYTFLYWLPYYISHTAIEGKYLSN ETAGNMSTFFDVGGVLGGILAGHISDRLDARAITAATFMYCAIPALYFYRSYGHISLA MNIALMFISGMFVNGPYALITTAVSADLGTHSSLKGNSKALATVTAIIDGTGSVGAAI GPLLTGYISAKSWSAVF" gene complement(25195643..25196780) /locus_tag="TCM_014928" /note="dbxref CacaoGD:Thecc1EG014928" mRNA complement(25195643..25196780) /locus_tag="TCM_014928" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018638001" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9034t1" CDS complement(25196329..25196631) /locus_tag="TCM_014928" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22890.1" /translation="MTIMPYECILVFRQSSDLPDASRSQFIFRKHPNPKIQPKPPRSL TLNPRNPIPLLPNFSSSATISLLHGNNKKQFFVHRRHGLRNLHCPELQRSQHQKAG" gene 25196859..25201038 /locus_tag="TCM_014929" /note="dbxref CacaoGD:Thecc1EG014929" mRNA join(25196859..25197057,25198942..25199120, 25199244..25200017,25200750..25201038) /locus_tag="TCM_014929" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035385t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS join(25198965..25199120,25199244..25199693) /locus_tag="TCM_014929" /note="paralog of Thecc1EG035385t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22891.1" /translation="MWNNIKMASNCERVWKTAMFAITWIVWIGRNKVVFHNKVWDKEV IWELIKLREKPSADAVKFNVDGAANGSPSEAGIGSLLRNEKGEVLIKFSKAIGRGDSN LAKYLGIREAFILFSNSIWAHNHSLAIESDSRNAIRWINDPSKTPWRLRKWMLHIEVL KKKVTDWKIRHTLREGNREANLLAKEGVGREVDLIEFHNPM" mobile_element complement(25199103..25199148) /note="source:scaffold_9_CACTA_0935 408 453" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25202453..25202535 /note="source:scaffold_1_CACTA_0005 6268 6353" /mobile_element_type="transposon:TIR/CACTA" gene 25203591..25211639 /locus_tag="TCM_014930" /note="dbxref CacaoGD:Thecc1EG014930" mRNA join(25203591..25203786,25204292..25204719, 25205373..25205450,25206780..25206866,25206969..25207090, 25207864..25207960,25209089..25209226,25209302..25209369, 25209460..25209690,25210411..25210813,25210976..25211639) /locus_tag="TCM_014930" /product="RPM1 interacting protein 2 isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m014218" /inference="similar to AA sequence:Phytozome:GSVIVT01018636001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc414t14; inference alignment:Newbler:10:TSA:cgbaL_g09053t00001" mRNA join(25203718..25203786,25204292..25204719, 25205373..25205450,25206780..25206866,25206969..25207090, 25207864..25207960,25208088..25208190,25208813..25208970, 25209089..25209226,25209302..25209369,25209460..25209690, 25210411..25210792,25210967..25211590) /locus_tag="TCM_014930" /product="RPM1 interacting protein 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014218" /inference="similar to AA sequence:ricco:30147.m014218" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09053t00001; inference alignment:Newbler:10:TSA:cgbaL_g09053t00001" CDS join(25204480..25204719,25205373..25205450, 25206780..25206866,25206969..25207090,25207864..25207960, 25208088..25208190,25208813..25208970,25209089..25209226, 25209302..25209369,25209460..25209690,25210411..25210792, 25210967..25211023) /locus_tag="TCM_014930" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014218" /codon_start=1 /product="RPM1 interacting protein 2 isoform 1" /protein_id="EOY22892.1" /db_xref="TAIR:AT4G25230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYC8" /translation="MGVSYLAISAVSTALSFVGLQLWTEFSLDKLQTDGLISENIIHT ENVNRALELLLGSYATVALLAIFVLNVFILLILSLKTVFFGELYPSETRKLVERLINY VIYKGTFLPLVIPPTIFQAGLWSIWLTVICCLKMFQALARDRLERLNASPSATPWAYF RVFSVFLFVISVNFFWIWLSFVIYRTLNSSMFLLLFFEPLSIAFETMQAILVHGFQLL EISLHSVGNSADCQRAKHFDLSAAGSFWEWKGILIRNLGFFLDMATLLMALGHYVLIW WLHGMAFHLVDAVLFLNIRALLSAIVKRIKGFIKLRMALGALHAALPDATSEEIRAYE DECAICREPMAKAKKLHCNHLFHLACLRSWLDQGLNEVYSCPTCRKPLFLGRPENEAN SRTGEALTDEQLARQINSGLDRQNVPGHTLPAGVFPNQMQNPVDGSPWRTAGLDSGWL HSWPNQSVDGAGPSTGIRSVGLGRVHMMMRHLASVGETYAQTALEDTAWSLWPMNPSQ AAASTSSVPPNVGGRYPGNAGSLHMRTASRTANDNIANILAMAETVREVLPHVPDELI FQDLQRTNSVTVTVNNLLQM" CDS join(25204480..25204719,25205373..25205450, 25206780..25206866,25206969..25207090,25207864..25207960, 25209089..25209226,25209302..25209369,25209460..25209690, 25210411..25210813,25210976..25211023) /locus_tag="TCM_014930" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="RPM1 interacting protein 2 isoform 4" /protein_id="EOY22895.1" /db_xref="Phytozome:GSVIVT01018636001" /db_xref="TAIR:AT4G25230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYC8" /translation="MGVSYLAISAVSTALSFVGLQLWTEFSLDKLQTDGLISENIIHT ENVNRALELLLGSYATVALLAIFVLNVFILLILSLKTVFFGELYPSETRKLVERLINY VIYKGTFLPLVIPPTIFQAGLWSIWLTVICCLKMFQALARDRLERLNASPSATPWAYF RVFSVFLFVISVNFFWIWLSFVIYRTLNSSMFLLLFFEPLSIAFETMQALLSAIVKRI KGFIKLRMALGALHAALPDATSEEIRAYEDECAICREPMAKAKKLHCNHLFHLACLRS WLDQGLNEVYSCPTCRKPLFLGRPENEANSRTGEALTDEQLARQINSGLDRQNVPGHT LPAGVFPNQMQNPVDGSPWRTAGLDSGWLHSWPNQSVDGAGPSTGIRSVGLGRVHMMM RHLASVGETYAQTALEDTAWSLWPMNPSQAAASTSSVPPNVGGRYPGNAGSLHMRTAS RTANDNIANILAMAETVREVLPHVPDELIFQVMLGFTARTNSVTVTVNNLLQM" mRNA join(25206349..25206377,25206780..25206866, 25206969..25207090,25207864..25207960,25208088..25208190, 25208813..25208982,25209089..25209226,25209302..25209369, 25209460..25209690,25210411..25210792,25210967..25211590) /locus_tag="TCM_014930" /product="RPM1 interacting protein 2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014218" /inference="similar to AA sequence:Phytozome:POPTR_0001s00610.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc398t6; inference alignment:Newbler:10:TSA:cgbaL_g09053t00001" mRNA join(25206349..25206377,25206780..25206866, 25206969..25207090,25207864..25207960,25208088..25208190, 25208813..25208970,25209089..25209226,25209302..25209369, 25209460..25209690,25210411..25210792,25210967..25211590) /locus_tag="TCM_014930" /product="RPM1 interacting protein 2 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014218" /inference="similar to AA sequence:Phytozome:POPTR_0001s00610.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc398t15; inference alignment:Newbler:10:TSA:cgbaL_g09053t00001" CDS join(25206969..25207090,25207864..25207960, 25208088..25208190,25208813..25208982,25209089..25209226, 25209302..25209369,25209460..25209690,25210411..25210792, 25210967..25211023) /locus_tag="TCM_014930" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RPM1 interacting protein 2 isoform 2" /protein_id="EOY22893.1" /db_xref="Phytozome:POPTR_0001s00610.1" /db_xref="TAIR:AT4G25230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYC8" /translation="MFQALARDRLERLNASPSATPWAYFRVFSVFLFVISVNFFWIWL SFVIYRTLNSSMFLLLFFEPLSIAFETMQAILVHGFQLLEISLHSVGNSADCQRAKHF DLSAAGSFWEWKGILIRNLGFFLDMATLLMALGHYVLIWWLHGMAFHLVDAVLFLNIR VNICALLSAIVKRIKGFIKLRMALGALHAALPDATSEEIRAYEDECAICREPMAKAKK LHCNHLFHLACLRSWLDQGLNEVYSCPTCRKPLFLGRPENEANSRTGEALTDEQLARQ INSGLDRQNVPGHTLPAGVFPNQMQNPVDGSPWRTAGLDSGWLHSWPNQSVDGAGPST GIRSVGLGRVHMMMRHLASVGETYAQTALEDTAWSLWPMNPSQAAASTSSVPPNVGGR YPGNAGSLHMRTASRTANDNIANILAMAETVREVLPHVPDELIFQDLQRTNSVTVTVN NLLQM" CDS join(25206969..25207090,25207864..25207960, 25208088..25208190,25208813..25208970,25209089..25209226, 25209302..25209369,25209460..25209690,25210411..25210792, 25210967..25211023) /locus_tag="TCM_014930" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RPM1 interacting protein 2 isoform 3" /protein_id="EOY22894.1" /db_xref="Phytozome:POPTR_0001s00610.1" /db_xref="TAIR:AT4G25230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYC8" /translation="MFQALARDRLERLNASPSATPWAYFRVFSVFLFVISVNFFWIWL SFVIYRTLNSSMFLLLFFEPLSIAFETMQAILVHGFQLLEISLHSVGNSADCQRAKHF DLSAAGSFWEWKGILIRNLGFFLDMATLLMALGHYVLIWWLHGMAFHLVDAVLFLNIR ALLSAIVKRIKGFIKLRMALGALHAALPDATSEEIRAYEDECAICREPMAKAKKLHCN HLFHLACLRSWLDQGLNEVYSCPTCRKPLFLGRPENEANSRTGEALTDEQLARQINSG LDRQNVPGHTLPAGVFPNQMQNPVDGSPWRTAGLDSGWLHSWPNQSVDGAGPSTGIRS VGLGRVHMMMRHLASVGETYAQTALEDTAWSLWPMNPSQAAASTSSVPPNVGGRYPGN AGSLHMRTASRTANDNIANILAMAETVREVLPHVPDELIFQDLQRTNSVTVTVNNLLQ M" gene 25211231..25255781 /locus_tag="TCM_014931" /note="dbxref CacaoGD:Thecc1EG014931" mRNA join(25211231..25211638,25246245..25246698, 25246946..25246954,25248179..25249038,25249669..25249830, 25249944..25250164,25250255..25250342,25250442..25251112, 25255702..25255781) /locus_tag="TCM_014931" /product="Glycosyl hydrolases family 32 protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014213" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016024t1" /inference="similar to AA sequence:ricco:30147.m014213" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6390t2" gene 25212263..25214869 /locus_tag="TCM_014932" /note="dbxref CacaoGD:Thecc1EG014932" mRNA join(25212263..25212498,25214086..25214228, 25214369..25214869) /locus_tag="TCM_014932" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10890.1" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS join(25212369..25212498,25214086..25214228, 25214369..25214650) /locus_tag="TCM_014932" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22898.1" /translation="MKSGDKSLELFHGKNENRATLFPLALNPPLVFFSFLTLLTYGHV SSIMSITLSFLLIFFSCLSMHACNARHLRVMDDKALAPHQKLQFSTKALESVELNRDD QISVREGSSGESHHATATVVKPKDSDNLLKETKQNREMSSSVPVPIKPLVSFSGRVPR KNYDERTGFFSDYSRPRTRPPSHN" mobile_element 25212739..25213825 /note="source:MITE_hAT_19 4 1114" /mobile_element_type="transposon:TIR/MITE" mobile_element 25216144..25216184 /note="source:scaffold_10_CACTA_0130 1164 1203" /mobile_element_type="transposon:TIR/CACTA" gene 25217649..25219085 /locus_tag="TCM_014933" /note="dbxref CacaoGD:Thecc1EG014933" mRNA 25217649..25219085 /locus_tag="TCM_014933" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014216" /inference="similar to AA sequence:ricco:30147.m014216" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc5206t1" CDS 25218180..25218890 /locus_tag="TCM_014933" /note="dbxref ricco:30147.m014216" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22899.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9S2" /translation="MTKKSFTILQKKLKELESELNQVFALPPETPHHKSFSQDIQQRF LFLKNLLSAEIASRPGKPYLQHIAQRFLELESAFQDWDSFQASAPDHIEKGSTCSCTD SCLNDDGEAAEGSLELSLADMEEVAEPSAELSLAGWDLEGSDEERMVTVPVLENLETA RVSEAESERRNEEERVWVEAERSMRKEETNRVWFGKYLRTLASGVVLGMVMMGCLMVR LSGCFHYASDYTFRLSPT" mobile_element complement(25220178..25220332) /note="source:CACAO_Mariner_E69_scaffold_2 2097 2241" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 25220980..25225636 /locus_tag="TCM_014934" /note="dbxref CacaoGD:Thecc1EG014934" mRNA join(25220980..25221916,25222524..25222814, 25225005..25225636) /locus_tag="TCM_014934" /product="BCL-2-associated athanogene 7, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014215" /inference="similar to AA sequence:ricco:30147.m014215" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02527t00001" CDS join(25221233..25221916,25222524..25222814, 25225005..25225220) /locus_tag="TCM_014934" /note="dbxref ricco:30147.m014215" /codon_start=1 /product="BCL-2-associated athanogene 7, putative" /protein_id="EOY22900.1" /db_xref="TAIR:AT5G62390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PG97" /translation="MSRFRRIDILEPYSSPLFVKKTSIFAPKPLAFPSFFEEEDDLTF ALDVLNPFPCFSPIEIYDSVTDLVQIEKTPSFCSYKRIQRRVEPEFSIQTLCDRVTAL ESKFDRLVNARKSGGERKYTWTTEIKGPVEKKYKWIAEIKDGKKKEAEKEKKYKWTAE IEGKGIDGPISRKYTFTASTGDAGEFSKLEKKQKNEKKAHKKDKKGENDTRIVEIEEP SDHGAVVLRQAFARRAGVIRNNRGKKKELSPQDAALMIQVTFRAYLIRRSQALRALRE LAVAKSKLKEIRAYFNNFSYRRRVAQDAEERQRFSEKIIVLLLTVDAIEGADLMVRAA KKSMVDELEAMLDVVDPQPPGKSLSMRRRTFDMPDSVIQKEIAEGVAQVVQMFESEEN AAAV" gene 25229930..25237682 /locus_tag="TCM_014935" /note="dbxref CacaoGD:Thecc1EG014935" mRNA join(25229930..25230059,25233106..25233158, 25233245..25233743,25233838..25233978,25234069..25234140, 25234310..25234432,25234535..25234591,25234675..25234776, 25234895..25234972,25235084..25235153,25235243..25235313, 25235403..25235495,25235834..25236564) /locus_tag="TCM_014935" /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014214.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016022t1" /inference="similar to AA sequence:ricco:30147.m014214" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1076t7; alternateUTRof:Thecc1EG014935t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1068t3_C2" mRNA join(25229975..25230059,25233106..25233158, 25233245..25233743,25233838..25233978,25234069..25234140, 25234310..25234432,25234535..25234591,25234675..25234776, 25234895..25234972,25235084..25235153,25235243..25235313, 25235403..25235495,25235834..25235879,25236819..25237682) /locus_tag="TCM_014935" /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014214.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016022t1" /inference="similar to AA sequence:ricco:30147.m014214" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1068t3_C2" mRNA join(25230267..25230296,25230547..25230655, 25233106..25233158,25233245..25233743,25233838..25233978, 25234069..25234140,25234310..25234432,25234535..25234591, 25234675..25234776,25234895..25234972,25235084..25235153, 25235243..25235313,25235403..25235495,25235834..25236534) /locus_tag="TCM_014935" /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014214.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016022t1" /inference="similar to AA sequence:ricco:30147.m014214" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1068t3_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1068t3_C2" mRNA join(25230267..25230296,25233106..25233158, 25233245..25233743,25233838..25233978,25234069..25234140, 25234310..25234432,25234535..25234591,25234675..25234776, 25234895..25234972,25235084..25235153,25235243..25235313, 25235403..25235495,25235834..25236534) /locus_tag="TCM_014935" /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014214.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016022t1" /inference="similar to AA sequence:ricco:30147.m014214" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1068t6_C2; alternateUTRof:Thecc1EG014935t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1068t3_C2" mRNA join(25233103..25233158,25233245..25233743, 25233838..25233978,25234069..25234143,25234310..25234432, 25234532..25234591,25234675..25234776,25234895..25234972, 25235084..25235153,25235242..25235313,25235403..25235495, 25235834..25236083) /locus_tag="TCM_014935" /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:30147.m014214.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016022t1" /inference="similar to AA sequence:ricco:30147.m014214" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6307t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1068t3_C2" CDS join(25233453..25233743,25233838..25233978, 25234069..25234140,25234310..25234432,25234535..25234591, 25234675..25234776,25234895..25234972,25235084..25235153, 25235243..25235313,25235403..25235495,25235834..25235879, 25236819..25237084) /locus_tag="TCM_014935" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014214; paralog of Thecc1EG016022t1" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 1" /protein_id="EOY22901.1" /db_xref="TAIR:AT5G51460.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O64896" /translation="MDLKSNHTAPILADPAPISKSRLGVHSSLLAYSPPGAVFSPNLF LTVPRKKTGILDDVRASGWLDAMKSSSPPHKKTREFNNELASADTDVAYRTWMVKYPS ALTSFEQITNFAKGKRMALFLDYDGTLSPIVDNPDCAFMSTDMRAAVEKVAKYFPTAI ISGRSRDKVYEFVGLTDLYYAGSHGMDIMGPVRQFSDDHANCIRSTDKQGKEVNLFQP ASEFLPMIDEVFNSLVNSTKEIKGAKVENNKFCVSVHYRNVDEKNWTTVAQRVHDVIR NYPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLSNCDDVLPIYVGDDRTDEDAF KVLREGNRGYGILVSSMPKESNAFFSLRDPQEVMEFLKSLVIWKKKTIAKMIQETGFA QMRQMFSPHPAVSLFVCLSLNFPPSTGSWISTFIEQLSPTSFGCLHDCGERREEVKKT GDVGWYQSRTHPVLMTDVE" CDS join(25233453..25233743,25233838..25233978, 25234069..25234140,25234310..25234432,25234535..25234591, 25234675..25234776,25234895..25234972,25235084..25235153, 25235243..25235313,25235403..25235495,25235834..25235890) /locus_tag="TCM_014935" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014214; paralog of Thecc1EG016022t1" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 2" /protein_id="EOY22902.1" /db_xref="TAIR:AT5G51460.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O64896" /translation="MDLKSNHTAPILADPAPISKSRLGVHSSLLAYSPPGAVFSPNLF LTVPRKKTGILDDVRASGWLDAMKSSSPPHKKTREFNNELASADTDVAYRTWMVKYPS ALTSFEQITNFAKGKRMALFLDYDGTLSPIVDNPDCAFMSTDMRAAVEKVAKYFPTAI ISGRSRDKVYEFVGLTDLYYAGSHGMDIMGPVRQFSDDHANCIRSTDKQGKEVNLFQP ASEFLPMIDEVFNSLVNSTKEIKGAKVENNKFCVSVHYRNVDEKNWTTVAQRVHDVIR NYPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLSNCDDVLPIYVGDDRTDEDAF KVLREGNRGYGILVSSMPKESNAFFSLRDPQEVMEFLKSLVIWKKKTSAL" CDS join(25233453..25233743,25233838..25233978, 25234069..25234140,25234310..25234432,25234535..25234591, 25234675..25234776,25234895..25234972,25235084..25235153, 25235243..25235313,25235403..25235495,25235834..25235890) /locus_tag="TCM_014935" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014214; paralog of Thecc1EG016022t1" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 2" /protein_id="EOY22903.1" /db_xref="TAIR:AT5G51460.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O64896" /translation="MDLKSNHTAPILADPAPISKSRLGVHSSLLAYSPPGAVFSPNLF LTVPRKKTGILDDVRASGWLDAMKSSSPPHKKTREFNNELASADTDVAYRTWMVKYPS ALTSFEQITNFAKGKRMALFLDYDGTLSPIVDNPDCAFMSTDMRAAVEKVAKYFPTAI ISGRSRDKVYEFVGLTDLYYAGSHGMDIMGPVRQFSDDHANCIRSTDKQGKEVNLFQP ASEFLPMIDEVFNSLVNSTKEIKGAKVENNKFCVSVHYRNVDEKNWTTVAQRVHDVIR NYPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLSNCDDVLPIYVGDDRTDEDAF KVLREGNRGYGILVSSMPKESNAFFSLRDPQEVMEFLKSLVIWKKKTSAL" CDS join(25233453..25233743,25233838..25233978, 25234069..25234140,25234310..25234432,25234535..25234591, 25234675..25234776,25234895..25234972,25235084..25235153, 25235243..25235313,25235403..25235495,25235834..25235890) /locus_tag="TCM_014935" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m014214; paralog of Thecc1EG016022t1" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 2" /protein_id="EOY22904.1" /db_xref="TAIR:AT5G51460.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O64896" /translation="MDLKSNHTAPILADPAPISKSRLGVHSSLLAYSPPGAVFSPNLF LTVPRKKTGILDDVRASGWLDAMKSSSPPHKKTREFNNELASADTDVAYRTWMVKYPS ALTSFEQITNFAKGKRMALFLDYDGTLSPIVDNPDCAFMSTDMRAAVEKVAKYFPTAI ISGRSRDKVYEFVGLTDLYYAGSHGMDIMGPVRQFSDDHANCIRSTDKQGKEVNLFQP ASEFLPMIDEVFNSLVNSTKEIKGAKVENNKFCVSVHYRNVDEKNWTTVAQRVHDVIR NYPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLSNCDDVLPIYVGDDRTDEDAF KVLREGNRGYGILVSSMPKESNAFFSLRDPQEVMEFLKSLVIWKKKTSAL" CDS join(25233453..25233743,25233838..25233978, 25234069..25234143,25234310..25234432,25234532..25234591, 25234675..25234776,25234895..25234972,25235084..25235153, 25235242..25235249) /locus_tag="TCM_014935" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30147.m014214; paralog of Thecc1EG016022t1" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 5" /protein_id="EOY22905.1" /db_xref="TAIR:AT5G51460.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O64896" /translation="MDLKSNHTAPILADPAPISKSRLGVHSSLLAYSPPGAVFSPNLF LTVPRKKTGILDDVRASGWLDAMKSSSPPHKKTREFNNELASADTDVAYRTWMVKYPS ALTSFEQITNFAKGKRMALFLDYDGTLSPIVDNPDCAFMSTDMRAAVEKVAKYFPTAI ISGRSRDKVVYEFVGLTDLYYAGSHGMDIMGPVRQFSDDHANCIRSTDKQQGKEVNLF QPASEFLPMIDEVFNSLVNSTKEIKGAKVENNKFCVSVHYRNVDEKNWTTVAQRVHDV IRNYPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGA" mobile_element complement(25238776..25238894) /note="source:CACAO_M_E69800_F12_scaffold_9 1470 1588" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25240185..25240392) /note="source:CACAO_PIF_E144_scaffold_10 2173 2390" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25240536..25240722 /note="source:scaffold_2_CACTA_0245 1470 1636" /mobile_element_type="transposon:TIR/CACTA" gene complement(25241308..25242530) /locus_tag="TCM_014936" /note="dbxref CacaoGD:Thecc1EG014936" mRNA complement(25241308..25242530) /locus_tag="TCM_014936" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage" CDS complement(25241946..25242374) /locus_tag="TCM_014936" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22906.1" /translation="MDKPSASNEPIKTPINYAINNKLLAKYASASRTVGQTVSSNLWE DDELLSVERIVIEPWDTITAQSRQELTVRAVTCLTSHVTVYLVGVLIQCAWGITSAAK SSKKCFNKDKHINPAKQVKLDNLDEAVLYRANCSNSYGHI" mobile_element 25242480..25242576 /note="source:CACAO_PIF_E144_scaffold_10 3547 3645" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25244318..25244912 /note="source:MITE_Unknow_2_25 32 642" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(25245970..25246026) /note="source:scaffold_5_CACTA_0581 3159 3209" /mobile_element_type="transposon:TIR/CACTA" CDS join(25246302..25246698,25246946..25246954, 25248179..25249038,25249669..25249830,25249944..25250164, 25250255..25250342,25250442..25250645) /locus_tag="TCM_014931" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014213; paralog of Thecc1EG016024t1" /codon_start=1 /product="Glycosyl hydrolases family 32 protein isoform 1" /protein_id="EOY22896.1" /db_xref="TAIR:AT1G62660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944C8" /translation="MEASTSHDPERNSAFYAPLPEHPSSGGAPATRSRPLKGFVVILA SVVFLLSLVALIINQSQEPLPMPNRVPSASPTSKPASFSEAEPRGVAEGVSAKSNPSL LNEASFNWTNAMFSWQRSAYHFQPQKNWMNDPDGPLYHKGWYHLFYQYNPDSAIWGNI TWGHAVSRDLIHWLYLPLAMVPDCWYDINGVWTGSATLLPDGQIVMLYTGSTNESAQV QNLAYPANLSDPLLLDWLKYPGNPVIVPPAGIETDEFRDPTTAWLGPDGTWRITIGSR FNETIGISLVYQTTNFTDYELLDGVLHAVPGTGMWECVDFYPVAINGSVGLDTSAFGP GIKHVLKASLDDTKVDHYALGTYDPVTDKWTPDNPEEDVGIGLKVDYGRYYASKTFFD QDKQRRILWGWINETDTETADLKKGWASLQTIPRSVLYDNKTGTHLLQWPVKEVESLR LNSTVFEEVLVEAGSIVPLDIGPATQLDILAEFEIESLESNTTDEVSDCGDGAIDRST FGPFGILVIADDSLSELTPVFFRPVNTSDGSLKTYFCADETRSSKANDVFKQVYGGKV PVLDDENYNMRVLVDHSIVESFAQGGRTVISSRIYPTEAIYGAARLFLFNNATGVNVK ATLKIWEMNSAFIRPFPFEEPL" mRNA join(25246309..25246698,25246946..25246954, 25248179..25249038,25249669..25249855,25250255..25250342, 25250442..25251083) /locus_tag="TCM_014931" /product="Glycosyl hydrolases family 32 protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014213" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016024t1" /inference="similar to AA sequence:ricco:30147.m014213" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00473t00002; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6390t2" CDS join(25246497..25246698,25246946..25246954, 25248179..25249038,25249669..25249855,25250255..25250334) /locus_tag="TCM_014931" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014213; paralog of Thecc1EG016024t1" /codon_start=1 /product="Glycosyl hydrolases family 32 protein isoform 2" /protein_id="EOY22897.1" /db_xref="TAIR:AT1G62660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P29000" /translation="MPNRVPSASPTSKPASFSEAEPRGVAEGVSAKSNPSLLNEASFN WTNAMFSWQRSAYHFQPQKNWMNDPDGPLYHKGWYHLFYQYNPDSAIWGNITWGHAVS RDLIHWLYLPLAMVPDCWYDINGVWTGSATLLPDGQIVMLYTGSTNESAQVQNLAYPA NLSDPLLLDWLKYPGNPVIVPPAGIETDEFRDPTTAWLGPDGTWRITIGSRFNETIGI SLVYQTTNFTDYELLDGVLHAVPGTGMWECVDFYPVAINGSVGLDTSAFGPGIKHVLK ASLDDTKVDHYALGTYDPVTDKWTPDNPEEDVGIGLKVDYGRYYASKTFFDQDKQRRI LWGWINETDTETADLKKGWASLQTIPRSVLYDNKTGTHLLQWPVKEVESLRLNSTVFE EVLVEAGSIVPLDIGPATQVLSSRLALCLPKLTMSSNKCMEARFQCLTMKTTI" gene 25255954..25260298 /locus_tag="TCM_014937" /note="dbxref CacaoGD:Thecc1EG014937" mRNA join(25255954..25256245,25257084..25257193, 25257282..25257552,25257630..25257768,25258123..25258489, 25258664..25259029,25259126..25259204,25259355..25259519, 25259632..25260019) /locus_tag="TCM_014937" /product="SKU5 similar 2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014212" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016026t1" /inference="similar to AA sequence:ricco:30147.m014212" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1545t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6327t4" mRNA join(25255972..25256245,25257084..25257193, 25257282..25257552,25257630..25257768,25258123..25258489, 25258664..25259029,25259126..25259204,25259355..25259554, 25259632..25260298) /locus_tag="TCM_014937" /product="SKU5 similar 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014212" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016026t1" /inference="similar to AA sequence:ricco:30147.m014212" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6327t4" CDS join(25256105..25256245,25257084..25257193, 25257282..25257552,25257630..25257768,25258123..25258489, 25258664..25259029,25259126..25259204,25259355..25259554, 25259632..25259734) /locus_tag="TCM_014937" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014212; paralog of Thecc1EG016026t1" /codon_start=1 /product="SKU5 similar 2 isoform 1" /protein_id="EOY22907.1" /db_xref="TAIR:AT5G51480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHN6" /translation="MAQLRVSLFLSIHIALLASLCFADDPYVFYDFKLSYITVSPLGV PQQVIAVNGAFPGPVVNATTNYNVAINVHNQLDENLLITWPGIQMRRNSWQDGVLGTN CPIHPKRNFTYQFQVKDQIGSFFYFPSLNFQRASGGFGPIIINNRNIIAIPFGQPDGD VVIVIGDWYTRNHTALRTTLDSGEDLGMPDGVLVNGRGPYRYNTTLVPDGIEYETINV DPGKTYRFRVHNVGISTSLNFRIQGHNLLLVETEGYYTTQQNFSSFDIHVGQSYSFLV TMDQNATTDYYIVASARFVNESVWERVTGVAILHYSNSKGPATGPLPVPPSDIYNQWS AMSQPRAIRQNTTASGARPNPQGSFHYGSINVTDTYVLQSFPPVTIEGKLRATLNGIS FVNPDTPIRLADLHNVKGAYKLDFPNKPLNRTPRVDRSVINATYKGFIEVILQNNDTR MQSFHMDGYAFFVVGMDFGVWTENSRNNYNKWDAISRCTTEVYPGAWTAVLISLDNVG VWNLRVENLDRWYLGQETYMRITNPEENGDTEMAPPANVLYCGALQSLQKESQSSSAK TLLSGNSKLFTILVVTILASIFTFS" CDS join(25256105..25256245,25257084..25257193, 25257282..25257552,25257630..25257768,25258123..25258489, 25258664..25259029,25259126..25259204,25259355..25259519, 25259632..25259730) /locus_tag="TCM_014937" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014212; paralog of Thecc1EG016026t1" /codon_start=1 /product="SKU5 similar 2 isoform 2" /protein_id="EOY22908.1" /db_xref="TAIR:AT5G51480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHN6" /translation="MAQLRVSLFLSIHIALLASLCFADDPYVFYDFKLSYITVSPLGV PQQVIAVNGAFPGPVVNATTNYNVAINVHNQLDENLLITWPGIQMRRNSWQDGVLGTN CPIHPKRNFTYQFQVKDQIGSFFYFPSLNFQRASGGFGPIIINNRNIIAIPFGQPDGD VVIVIGDWYTRNHTALRTTLDSGEDLGMPDGVLVNGRGPYRYNTTLVPDGIEYETINV DPGKTYRFRVHNVGISTSLNFRIQGHNLLLVETEGYYTTQQNFSSFDIHVGQSYSFLV TMDQNATTDYYIVASARFVNESVWERVTGVAILHYSNSKGPATGPLPVPPSDIYNQWS AMSQPRAIRQNTTASGARPNPQGSFHYGSINVTDTYVLQSFPPVTIEGKLRATLNGIS FVNPDTPIRLADLHNVKGAYKLDFPNKPLNRTPRVDRSVINATYKGFIEVILQNNDTR MQSFHMDGYAFFVVGMDFGVWTENSRNNYNKWDAISRCTTEVYPGAWTAVLISLDNVG VWNLRVENLDRWYLGQETYMRITNPEENGDTEMAPPANGITKLFCKDIAQWELQVVYH FGGHNFSFNFHF" mobile_element 25261062..25263146 /note="source:INTACT618_F274_scaffold_3-int 3560 5079" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(25265524..25267808) /locus_tag="TCM_014939" /note="dbxref CacaoGD:Thecc1EG014939" mRNA complement(join(25265524..25266658,25267189..25267460, 25267560..25267808)) /locus_tag="TCM_014939" /product="NAC domain protein, IPR003441" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018623001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016035t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018623001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1655t1" CDS complement(join(25266005..25266658,25267189..25267460, 25267560..25267719)) /locus_tag="TCM_014939" /note="paralog of Thecc1EG016035t1" /codon_start=1 /product="NAC domain protein, IPR003441" /protein_id="EOY22909.1" /db_xref="Phytozome:GSVIVT01018623001" /db_xref="TAIR:AT1G12260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4M8" /translation="MNTFTQVPPGFRFHPTDEELVDYYLRKKITSRRIDLDVIKDVDL YKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWAVCRVFKKRIAT IRKVSEHESPCWYDDQVSFIPDLDSPKQTSQSNMAYHIPYSCKKELDLQYHVPHEHYL QLPLLESPKLLQTPAGAVTCNSMAAYGLDMNNASTLQSSTLTQEDHIQQTHDQQHLHA LYGNSSNAQAVDQLTDWRVLDKFVASQLSQEDVAKENNYLSASAANNVFHSSEQTNLL SRHLNKQEMVPENASTSTSSCQIDLWK" gene 25278923..25283839 /locus_tag="TCM_014940" /note="dbxref CacaoGD:Thecc1EG014940" mRNA join(25278923..25282265,25282348..25282443, 25282827..25282911,25283220..25283839) /locus_tag="TCM_014940" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="similar to AA sequence:Phytozome:POPTR_0004s21110.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1305t2_C1; alternateUTRof:Thecc1EG014940t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1305t1_C1" mRNA join(25278923..25282265,25282363..25282443, 25282827..25282911,25283220..25283839) /locus_tag="TCM_014940" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="similar to AA sequence:Phytozome:POPTR_0004s21110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1305t1_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1305t1_C1" mRNA join(25278923..25282265,25282392..25282443, 25282827..25282911,25283220..25283839) /locus_tag="TCM_014940" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="similar to AA sequence:Phytozome:POPTR_0004s21110.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1305t3_C1; alternateUTRof:Thecc1EG014940t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1305t1_C1" CDS 25279242..25282253 /locus_tag="TCM_014940" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY22910.1" /db_xref="Phytozome:POPTR_0004s21110.1" /db_xref="TAIR:AT5G62370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVA2" /translation="MIKKRLLSCHLFFKTRRAITTSTLPLDPSFAAVSSICTDHKSFC LSLTEQLIKRGLLSSAQQLIQRIISQSSSVSDAITAVDFVTARGLDLDLSTFGALIKK LVRSGYPQLAYSLYSDNIIRRGINPDPFIVNSMVICLCKLGKLEEASTLFDRLLMNNS SEKPAFNALVRELFAQERFLDVFDYFVAMSDIGVNLGCWYYNGLIDGLCQKGNLEEAI QMFDLMRETAGLSPTLHLYKSLFYGLCKHGWVLEAEFLIGEIESQGFYVDRTMYTSLI KEYCKDRKMKMAMRIYLRMLKTGCEPDSYTYNTLIHGFVKMGLFDQGWVLYNQMMEKG LQPDVITYHVMISNYCREGKANCASMLLNSMVSNNLAPSVHCYTVLITSFYKENRLME AGELYKSMLTGGIVPDHVLFFTLMKMYPKGYELHLALMIVQAIAVNGCGFDPLLLAVS DSEDLEQKIELLIGKIEKTNLSLANVAFTILISALSEGRKLDTAVHFMDKLMNLGCMP LLFTYNSLVKCLSQEGLFEDAKSLVDLMQDRGIFPDQATYLIMVNEHCKHGDLASAFD ILDQMEDRGMKPGVAIYDCIIGSLCRQKRLFEAEDMFIRMLESGEDPDEIVYMTMING YAKNGRLIEARQLFEKMIEDAIRPTSHSYTALISGLVKKDMTDKGCMYLDRMLGDGLV PNVVLYTSLINNFLRKGEFEFAFRLVDLMDRNQIEHDLITYIALVSGVCRNITSRKRW CSIKRSSERAREMLFRLLHYRCLLPREKKLRVSDSSPEAMKCFALKLMQKVKETRFMP NLYLYNGIISGFCWADRMQDAYDHFELMQKEGVRPNQVTLTILMGGHIKAGEIDHAID LFNKMNADDCTPDKIAYNTLIKGLCQAGRLLEALSLLHAMHKRGLIPRKATYENLLAH FCASYLCIPAFKIFEEMLASNVVPRPYSYNWLLCILCEQKKLREAYIVFDTMIQRGKY PLKSTERLLAETLRKQGECDFGFMIQDITPV" CDS 25279242..25282253 /locus_tag="TCM_014940" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY22911.1" /db_xref="Phytozome:POPTR_0004s21110.1" /db_xref="TAIR:AT5G62370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVA2" /translation="MIKKRLLSCHLFFKTRRAITTSTLPLDPSFAAVSSICTDHKSFC LSLTEQLIKRGLLSSAQQLIQRIISQSSSVSDAITAVDFVTARGLDLDLSTFGALIKK LVRSGYPQLAYSLYSDNIIRRGINPDPFIVNSMVICLCKLGKLEEASTLFDRLLMNNS SEKPAFNALVRELFAQERFLDVFDYFVAMSDIGVNLGCWYYNGLIDGLCQKGNLEEAI QMFDLMRETAGLSPTLHLYKSLFYGLCKHGWVLEAEFLIGEIESQGFYVDRTMYTSLI KEYCKDRKMKMAMRIYLRMLKTGCEPDSYTYNTLIHGFVKMGLFDQGWVLYNQMMEKG LQPDVITYHVMISNYCREGKANCASMLLNSMVSNNLAPSVHCYTVLITSFYKENRLME AGELYKSMLTGGIVPDHVLFFTLMKMYPKGYELHLALMIVQAIAVNGCGFDPLLLAVS DSEDLEQKIELLIGKIEKTNLSLANVAFTILISALSEGRKLDTAVHFMDKLMNLGCMP LLFTYNSLVKCLSQEGLFEDAKSLVDLMQDRGIFPDQATYLIMVNEHCKHGDLASAFD ILDQMEDRGMKPGVAIYDCIIGSLCRQKRLFEAEDMFIRMLESGEDPDEIVYMTMING YAKNGRLIEARQLFEKMIEDAIRPTSHSYTALISGLVKKDMTDKGCMYLDRMLGDGLV PNVVLYTSLINNFLRKGEFEFAFRLVDLMDRNQIEHDLITYIALVSGVCRNITSRKRW CSIKRSSERAREMLFRLLHYRCLLPREKKLRVSDSSPEAMKCFALKLMQKVKETRFMP NLYLYNGIISGFCWADRMQDAYDHFELMQKEGVRPNQVTLTILMGGHIKAGEIDHAID LFNKMNADDCTPDKIAYNTLIKGLCQAGRLLEALSLLHAMHKRGLIPRKATYENLLAH FCASYLCIPAFKIFEEMLASNVVPRPYSYNWLLCILCEQKKLREAYIVFDTMIQRGKY PLKSTERLLAETLRKQGECDFGFMIQDITPV" CDS 25279242..25282253 /locus_tag="TCM_014940" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY22912.1" /db_xref="Phytozome:POPTR_0004s21110.1" /db_xref="TAIR:AT5G62370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVA2" /translation="MIKKRLLSCHLFFKTRRAITTSTLPLDPSFAAVSSICTDHKSFC LSLTEQLIKRGLLSSAQQLIQRIISQSSSVSDAITAVDFVTARGLDLDLSTFGALIKK LVRSGYPQLAYSLYSDNIIRRGINPDPFIVNSMVICLCKLGKLEEASTLFDRLLMNNS SEKPAFNALVRELFAQERFLDVFDYFVAMSDIGVNLGCWYYNGLIDGLCQKGNLEEAI QMFDLMRETAGLSPTLHLYKSLFYGLCKHGWVLEAEFLIGEIESQGFYVDRTMYTSLI KEYCKDRKMKMAMRIYLRMLKTGCEPDSYTYNTLIHGFVKMGLFDQGWVLYNQMMEKG LQPDVITYHVMISNYCREGKANCASMLLNSMVSNNLAPSVHCYTVLITSFYKENRLME AGELYKSMLTGGIVPDHVLFFTLMKMYPKGYELHLALMIVQAIAVNGCGFDPLLLAVS DSEDLEQKIELLIGKIEKTNLSLANVAFTILISALSEGRKLDTAVHFMDKLMNLGCMP LLFTYNSLVKCLSQEGLFEDAKSLVDLMQDRGIFPDQATYLIMVNEHCKHGDLASAFD ILDQMEDRGMKPGVAIYDCIIGSLCRQKRLFEAEDMFIRMLESGEDPDEIVYMTMING YAKNGRLIEARQLFEKMIEDAIRPTSHSYTALISGLVKKDMTDKGCMYLDRMLGDGLV PNVVLYTSLINNFLRKGEFEFAFRLVDLMDRNQIEHDLITYIALVSGVCRNITSRKRW CSIKRSSERAREMLFRLLHYRCLLPREKKLRVSDSSPEAMKCFALKLMQKVKETRFMP NLYLYNGIISGFCWADRMQDAYDHFELMQKEGVRPNQVTLTILMGGHIKAGEIDHAID LFNKMNADDCTPDKIAYNTLIKGLCQAGRLLEALSLLHAMHKRGLIPRKATYENLLAH FCASYLCIPAFKIFEEMLASNVVPRPYSYNWLLCILCEQKKLREAYIVFDTMIQRGKY PLKSTERLLAETLRKQGECDFGFMIQDITPV" gene 25282917..25283245 /locus_tag="TCM_014941" /note="dbxref CacaoGD:Thecc1EG014941" mRNA 25282917..25283245 /locus_tag="TCM_014941" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1305t1_C2" CDS 25282954..25283163 /locus_tag="TCM_014941" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22913.1" /translation="MFSNAYRNSLSLSFLLGVCSHEIKGESLNLIRHDSMYYVIVICL DSSGSCFCRTYWKSNMNILFKTYIA" gene complement(25283625..25286589) /locus_tag="TCM_014942" /note="dbxref CacaoGD:Thecc1EG014942" mRNA complement(join(25283625..25284728,25285144..25286589)) /locus_tag="TCM_014942" /product="Pectinesterase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005543t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14740.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6317t1" CDS complement(join(25284037..25284728,25285144..25286002)) /locus_tag="TCM_014942" /note="paralog of Thecc1EG005543t1" /codon_start=1 /product="Pectinesterase" /protein_id="EOY22914.1" /db_xref="Phytozome:POPTR_0015s14740.1" /db_xref="TAIR:AT2G45220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4M5" /translation="MATKLALFVIFMSFSLVPPTLSSVVTNGIDYWCDRTPNPQPCKY FMRQKGKSYVPKQKSEFRKMAVQIALDRALNAQSHNKGLGKKCRNDKEKAAWADCLKL YEETILQLNQTLDSTKCTDFDVQTWLSTALTNLETCRAGFVELGVSDYILPLMSNNVS KLISNTLALNNNASFVPQTYKHGFPRWLKAGDRKLLQSSSPTPNLVVAQDGSGNHRTI KEALDAAAKRSGSGRFVIHVKRGVYKENLEIGNKLKNIMLVGDGLRYTIITGSRSVGG GSTTFNSATVAVTGEGFIARGITFRNTAGPQNHQAVALRSGSDLSVFYRCGFEGYQDT LYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMDKQKNIVTAQGRTDPNQ NTGISIHNSRVMAANDLTPVLSSFKTFLGRPWKEYSRTVFMQTYLDSLVDPAGWFEWD GDFALNTLYYGEYKNIGPAAPTSRRVTWKGYRVITSATEASKFTVTNFIAGRSWLPDT GIPFTSGL" mobile_element 25287671..25287723 /note="source:CACAO_PIF_E144_scaffold_10 5998 6051" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(25288147..25290384) /locus_tag="TCM_014943" /note="dbxref CacaoGD:Thecc1EG014943" mRNA complement(join(25288147..25289062,25289229..25290384)) /locus_tag="TCM_014943" /product="Plant invertase/pectin methylesterase inhibitor superfamily" /inference="alignment:exonerate-protein:2:frave:gene21250" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014942t1" /inference="similar to AA sequence:ricco:30147.m014208" /note="quality class is strong, express is medium, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6015t1" CDS complement(join(25288368..25289062,25289229..25290108)) /locus_tag="TCM_014943" /note="dbxref ricco:30147.m014208; paralog of Thecc1EG014942t1" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily" /protein_id="EOY22915.1" /db_xref="TAIR:AT3G47400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STY3" /translation="MEVKILLIFLISFSSIFSTALARGSRSNITWWCSKTPHPEPCKY FMRHGSHRFAPEHMTEFRKMIVRVALDRAVVAEKNVLEFGQSCESRHQKAAWRDCLKL FDNTILQLNLTLQGLETGRRISCSDFDAQTWLSTALTNIQTCEAGFMDFNVSDFSTPI TSNNISQLISNSLAVNGVFLHMKNHTEVSPGWLSRHDRWLLASASTKVKAHLVVAKDG SGNFKTVQAALDAAAKRRRTSRLIIYVKKGVYRENIEVVNTNSNIMLIGDGMKRTIIT SSRSVKTGYTTYSSATAGIDGPGFIARDITFSNTAGPTKGQAVALRSASDLSVFYRCA IQGYQDTLMVHSQRQFYRECYIYGTIDIIFGNAAVVLQNCSIFARKPLKGQANIITAQ GRGDPYQNTGIAIHNSRILAANDLKPVVRSFKTYLGRPWQKYSRTVVLKTYLGSLVSP AGWSKWGDSNFALDTLYYGEYKNNGPASSTRYRVKWRGFHVITSPNVASRFTVNSLIA GGSWLPATGVPFTAGL" gene 25292773..25297614 /locus_tag="TCM_014944" /note="dbxref CacaoGD:Thecc1EG014944" mRNA join(25292773..25293263,25293828..25294235, 25294320..25294412,25294526..25294687,25294786..25294882, 25295566..25295732,25295826..25296315,25297303..25297614) /locus_tag="TCM_014944" /product="Glycosyl hydrolase 9B1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g00750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014945t1" /inference="similar to AA sequence:ricco:30147.m014207" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2700t1" mRNA join(25292975..25293263,25293828..25294235, 25294320..25294412,25294526..25294687,25294786..25294882, 25295642..25296317) /locus_tag="TCM_014944" /product="Glycosyl hydrolase 9B1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g00750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014945t1" /inference="similar to AA sequence:ricco:30147.m014207" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3453t2_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2700t1" CDS join(25293060..25293263,25293828..25294235, 25294320..25294412,25294526..25294687,25294786..25294882, 25295566..25295732,25295826..25296146) /locus_tag="TCM_014944" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014207; paralog of Thecc1EG014945t1" /codon_start=1 /product="Glycosyl hydrolase 9B1 isoform 1" /protein_id="EOY22916.1" /db_xref="TAIR:AT1G70710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICT4" /translation="MSLLQRLLVFGVVAMAVGLVARVASHDYGDALTKSILFFEGQRS GKLPLTQRMTWRKDSALRDGFEIGVDLVGGYYDAGDNVKFNFPMAFSITMLAWSVLEF GQSMGSDLQHALEAIQWGTDYFLKATSIPGFVFAQVGDPNGDHNCWERPEDMDTPRTP YAVSKKFPGSEVSAEIAAALAASSMVFRSINREYSARLLKRARMVFEFADTYRGSYND SLGPWVCPFYCDYSGYEDELLWGATWLFRATKAPYYWNYVLDNINNLEKSSSYAEFGW DAKHAGINILVSKLIKSQTPSVINADKFVCSLLPNSPTASVSYTPGGLIIKPGGSNMQ RVTALSFLLLVYSRPLSKANRVIYCGDDIVATPARLVQVARSQVDYILGSNPLNMSYM VGYGKKFPEMIHHRGSSLPSISQHPQHIDCGGGGTYFSSDNSNPNLLTGAVVGGPDVK DSYDDSRADFKHSEPTTYINAPLVGLLAYFKSH" CDS join(25293060..25293263,25293828..25294235, 25294320..25294412,25294526..25294687,25294786..25294882, 25295642..25295652) /locus_tag="TCM_014944" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014207; paralog of Thecc1EG014945t1" /codon_start=1 /product="Glycosyl hydrolase 9B1 isoform 2" /protein_id="EOY22917.1" /db_xref="TAIR:AT1G70710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICT4" /translation="MSLLQRLLVFGVVAMAVGLVARVASHDYGDALTKSILFFEGQRS GKLPLTQRMTWRKDSALRDGFEIGVDLVGGYYDAGDNVKFNFPMAFSITMLAWSVLEF GQSMGSDLQHALEAIQWGTDYFLKATSIPGFVFAQVGDPNGDHNCWERPEDMDTPRTP YAVSKKFPGSEVSAEIAAALAASSMVFRSINREYSARLLKRARMVFEFADTYRGSYND SLGPWVCPFYCDYSGYEDELLWGATWLFRATKAPYYWNYVLDNINNLEKSSSYAEFGW DAKHAGINILVSKLIKSQTPSVINADKFVCSLLPNSPTASVSYTPVAL" mobile_element complement(25296441..25296521) /note="source:scaffold_4_CACTA_0511 5706 5782" /mobile_element_type="transposon:TIR/CACTA" gene 25297663..25304030 /locus_tag="TCM_014945" /note="dbxref CacaoGD:Thecc1EG014945" mRNA join(25297663..25297810,25300738..25301078, 25301420..25301827,25301925..25302017,25302099..25302296, 25302387..25302492,25302864..25303027,25303314..25304030) /locus_tag="TCM_014945" /product="Glycosyl hydrolase 9B1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018619001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014944t1" /inference="similar to AA sequence:ricco:30147.m014206" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4189t1" mobile_element complement(25297784..25297868) /note="source:scaffold_1_CACTA_0023 6340 6417" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25298050..25298828) /note="source:scaffold_1_CACTA_0011 12712 13487" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25298829..25298954 /note="source:INTACT622F_F362_scaffold_4-int 10273 11188" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25298955..25299182 /note="source:CACAO_M_E49205_F4_scaffold_6 2147 3306" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25299243..25300036) /note="source:CACAO_on_S_E46_scaffold_2 7591 8382" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25300039..25300128) /note="source:CACAO_on_S_E46_scaffold_2 17797 17886" /mobile_element_type="transposon:TIR/Mutator" CDS join(25300863..25301078,25301420..25301827, 25301925..25302017,25302099..25302296,25302387..25302492, 25302864..25303027,25303314..25303652) /locus_tag="TCM_014945" /note="dbxref ricco:30147.m014206; paralog of Thecc1EG014944t1" /codon_start=1 /product="Glycosyl hydrolase 9B1" /protein_id="EOY22918.1" /db_xref="TAIR:AT1G23210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICT4" /translation="MASGESTSMITLLTLLLLLGMAMLDRVASQNYGDALSKCILFFE GQRSGKLPPNQRMNWRKDSALRDGFDIGMNLVGGYYDAGDNVKFNFPMAFSTTMLAWS VIEFGQFMGSDLQYALDSIRWGTDYLLEATKFPGKVTAAVGDPNADHNCWQRPEDMDT PRPSYVVNQTHPGSEVSAETAAALAASSLVFESADKKYSIVLVNRAKQVFDFADMFRG NYKDSVGQGVCPFYCDYDGYVDELIWGAAWLFKVTNEQKYWDYLQRNIPRLPKKVTTL VDGQLQASASFAEFGWDAKYAGINVLVSGLVMNSNNSNPYVLQAGKFVCTLLPESPSK SVSYSPGGLLFKPGGSNMQHATSLSFLLVVYAQYLKKHNGAVPCGNVNAEPSRLEQIA KGQVDYILGKNPLSMSYMVGFGQKFPQRIHHRAASLPSIGNHPEHIKCKDGTPYFQTK NPNPNLLTGAIVGGPDEKDQFPDNRMNAPQSEPTTYINAPFVGVLAYFKAFPNPQAI" mobile_element complement(25304032..25305746) /note="source:scaffold_5_CACTA_0615 173 1879" /mobile_element_type="transposon:TIR/CACTA" gene complement(25307196..25308223) /locus_tag="TCM_014946" /note="dbxref CacaoGD:Thecc1EG014946" mRNA complement(25307196..25308223) /locus_tag="TCM_014946" /product="DC1.2-like, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014204" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016048t1" /inference="similar to AA sequence:ricco:30147.m014204" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6439t2" CDS complement(25307566..25308171) /locus_tag="TCM_014946" /note="dbxref ricco:30147.m014204; paralog of Thecc1EG016048t1" /codon_start=1 /product="DC1.2-like, putative" /protein_id="EOY22919.1" /db_xref="TAIR:AT5G62360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2VT54" /translation="MEGTFCSHSFKFLLILLAINSYINFSSAGRQIAPQSSAEFIRTS CSSTTYPKLCFETLSTHASLIQTSPQLLAHAALNVTLSTTESTSAMMVTLSKSHGLKP REAEAMQDCVEELSDSIDELRKSISEMGQVKGSNFGLMINDVQTWVSAALTDESTCSD GFQGNNMNGNVKTAVRTKILRIAHLTSNALALINNYASLHG" gene 25308459..25309332 /locus_tag="TCM_014947" /note="dbxref CacaoGD:Thecc1EG014947" mRNA 25308459..25309332 /locus_tag="TCM_014947" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.36 coverage" CDS 25308882..25309082 /locus_tag="TCM_014947" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22920.1" /translation="MHLCGALKTNERGFKASAAGFTRTHSAIWSDESPIVILVRHLQV GYMQRELEKLLPIVIKTIIMAV" mobile_element 25310646..25312653 /note="source:scaffold_5_CACTA_0615 196 2254" /mobile_element_type="transposon:TIR/CACTA" gene 25312736..25313384 /locus_tag="TCM_014948" /note="dbxref CacaoGD:Thecc1EG014948" mRNA join(25312736..25312896,25312996..25313384) /locus_tag="TCM_014948" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014203.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016041t1" /inference="similar to AA sequence:ricco:30147.m014203" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(25312794..25312896,25312996..25313234) /locus_tag="TCM_014948" /note="dbxref ricco:30147.m014203; paralog of Thecc1EG016041t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22921.1" /translation="MYPEICYKTLLAYASTIQTSPRELANAALSVSLNDELHQSNAAM KDLQGPDFEMKMRNIQTWVSAALINEDTCMDGIGGKAMNDKIKDTIWSNIARVAQLTS NALAFINELSY" gene 25315866..25317015 /locus_tag="TCM_014949" /note="dbxref CacaoGD:Thecc1EG014949" mRNA join(25315866..25316257,25316398..25317015) /locus_tag="TCM_014949" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014202" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014951t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2504t1_C2" CDS join(25315886..25316257,25316398..25316511) /locus_tag="TCM_014949" /note="paralog of Thecc1EG014951t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22922.1" /translation="MEAAKSLRSCSLHFFHIFIFSFAILFLMSSIPTISAKTSNSSCI KTYKSYIKTACKSATYQKDCYKSLSPYASTIKTDPEKLYKVTLYITIRAARETSSSIS SLWRLKDLTPTERGIIRDCAETFDGQTVSNAVNKNIKKTVLNLARMTSNCLALVDAVN Y" mobile_element 25317467..25319322 /note="source:scaffold_4_CACTA_0482 8180 10042" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25320697..25321156) /note="source:scaffold_10_CACTA_0130 8745 9277" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25321257..25321450) /note="source:scaffold_10_CACTA_0130 7919 8112" /mobile_element_type="transposon:TIR/CACTA" gene 25321656..25322592 /locus_tag="TCM_014951" /note="dbxref CacaoGD:Thecc1EG014951" mRNA 25321656..25322592 /locus_tag="TCM_014951" /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14660.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14660.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS 25321695..25322327 /locus_tag="TCM_014951" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /protein_id="EOY22923.1" /db_xref="Phytozome:POPTR_0015s14660.1" /db_xref="TAIR:AT5G51520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICT9" /translation="MEAKSLTMSSSSLHLLQVLLYPFSILLLMSNMQKISAAATTKAN STGTYKNFIKTACNTTRYPKECNKALSPYASTIKTDPQKLCDTALSLTLNATCNTSSS IESLSKMKGLSPSETEIIRDCSETVGDAIDELTDSLKAMARAQGSERRTEMGNVRTWV SAALTNEYTCTDEFEGQKVSKTVKNTMKKSVMYLTKMTSNCLALLNLLDY" mobile_element complement(25325263..25325446) /note="source:CACAO_on_E454_scaffold_2 217 401" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25325363..25325573 /note="source:scaffold_4_CACTA_0483 5555 5757" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25325394..25325811 /note="source:CACAO_MITE_S87_scaffold_3 1 418" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(25325790..25325869) /note="source:CACAO_MITE_S45_scaffold_2 286 372" /mobile_element_type="transposon:TIR/MITE" mobile_element 25325975..25326568 /note="source:CACAO_on_E378_scaffold_1 272 889" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25326440..25326583 /note="source:INTACT1_F64_scaffold_3-int 1458 1597" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(25326655..25330770) /locus_tag="TCM_014952" /note="dbxref CacaoGD:Thecc1EG014952" mRNA complement(join(25326655..25327929,25328875..25328972, 25330631..25330770)) /locus_tag="TCM_014952" /product="Plant invertase/pectin methylesterase inhibitor superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene21260" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016049t1" /inference="similar to AA sequence:frave:gene21260" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6439t3" CDS complement(join(25327250..25327929,25328875..25328887)) /locus_tag="TCM_014952" /note="dbxref frave:gene21260; paralog of Thecc1EG016049t1" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily protein" /protein_id="EOY22924.1" /db_xref="TAIR:AT5G62350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L8T0" /translation="MARGEPCQNFFIQAALTHKFSSFHVFSSAKEKKKMARTSLVFLL LSLLYMACQATSPAAASSRASNFIKASCSATKYPALCVQSLAAFAPSIQQSPRQLAQT ALNVSLARAQSTEAFVSKMKKFKGLEKREYEAIKDCIEEMSDSVDRLSKSVQELKHMG QAKGQDFLWHVSNVETWVSAALTDESTCVDGFASQGLDGKVKASIRARVMNVAQVTSN ALSLVNQFASKQ" gene complement(25330659..25337380) /locus_tag="TCM_014953" /note="dbxref CacaoGD:Thecc1EG014953" mRNA complement(join(25330659..25332732,25333450..25333468, 25333956..25334021,25334145..25334252,25334331..25334411, 25334658..25334814,25334933..25335050,25335810..25335858, 25336714..25336767,25336915..25337380)) /locus_tag="TCM_014953" /product="Tetratricopeptide repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14630.1" /inference="similar to AA sequence:frave:gene21263" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6370t1" CDS complement(join(25331129..25332732,25333450..25333468, 25333956..25334021,25334145..25334252,25334331..25334411, 25334658..25334814,25334933..25335050,25335810..25335858, 25336714..25336767,25336915..25336980)) /locus_tag="TCM_014953" /note="dbxref frave:gene21263" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY22925.1" /db_xref="TAIR:AT4G25270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SB36" /translation="MWRRVASLSSLISSSNSSFHGQAACRLTIWESLTTGIAQQAKGV SKEKTPFITFVLGGPGSGKGTQCIKIVETFGFTHLSAGDLLRQEITSNSADGAMILNT IKEGRIVPSEVTVKLIQKEMESNDNHKFLIDGFPRSEENRIAFERIIGAEPNIVLFFD CPEEEMVKRVLNRNQGRVDDNIDTVRKRLKVFEALNLPVINYYSQRGKLYTINAVGTV DEIFEQVLPVFTASELTFKISIPPFLSALLSLTMVALLQPPSFHFVSWTLSCSSKSKK SEKQKQLKRKQIHQSKSTALPFRKSSPTPLLINHKPFTQTKLQALDAVVKDLEASVKN GMNITSEIFSSLLETCYQLKSIDQGIKIHNLVPKTLLRKNTGISSKLLRLYASCGHIE SAHQVFDEMSKRNESAFPWNSLISGYAELGQYEDALAIYFQMEEEGVEPDRYTFPRAL KACAGIGLIQIGEAVHRDVVRKGFGNDGFVLNALIDMYAKCGDIVKARRVFDNIACKD TVSWNSMLTGYIRHGLLVEALEVFRGMIREGYEPDPVAMSTILSGVWSLKIALQIHGW ILRRGNEWNLSVVNALIVVYSNHGKLDRASWLFHRIPEPDVVSWNSIISGHSKRPEAL VYFEQMVSGGTLPDSITFVAILSACAHLGFVRDGEQLFSLMRKKYAINPIMEHYACMV NLYGRAGLIDEAFTLIVERMEFEAGPTVWGALLHACSVHGHIDVGEIAAQNLFELEPD NEHNFELLKKIYSNAGRLEDVERVSKMMLDRGL" mobile_element 25338859..25339037 /note="source:scaffold_7_CACTA_0795 2852 3034" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25338988..25339150) /note="source:scaffold_1_CACTA_0032 2345 2494" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25341082..25342378 /note="source:INTACT445_F217_scaffold_8-int 1 1296" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 25342378..25342709 /note="source:INTACT445_F217_scaffold_8-int 1464 1794" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 25343570..25344043 /note="source:scaffold_9_CACTA_0946 17728 18236" /mobile_element_type="transposon:TIR/CACTA" gene 25346373..25348347 /locus_tag="TCM_014956" /note="dbxref CacaoGD:Thecc1EG014956" mRNA join(25346373..25346687,25347424..25348347) /locus_tag="TCM_014956" /product="Myb domain protein 42" /inference="alignment:exonerate-protein:2:frave:gene21264" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016054t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14600.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01715t00001" CDS join(25346425..25346687,25347424..25347976) /locus_tag="TCM_014956" /note="paralog of Thecc1EG016054t1" /codon_start=1 /product="Myb domain protein 42" /protein_id="EOY22926.1" /db_xref="Phytozome:POPTR_0015s14600.1" /db_xref="TAIR:AT4G12350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A6YSM6" /translation="MGRQPCCDKLGVKKGPWTAEEDKKLVNFILTHGQCCWRAVPKLA GLRRCGKSCRLRWTNYLRPDLKRGLLNEDEEQLVIDLHARLGNRWSKIAARLPGRTDN EIKNHWNTHIKKKLLKMGIDPVTHEPLQKPAATAQDATCQENDQPNLDPNQLELPKNS GHVSPSTDEFCTPTENSSTDESRSSSESGSDDDPLMNLIWSESFLNDLSWNFPGPDSR EEYSELGFSSSSEENSLSWLLDYPNIGDDLHQSFGIGGFSEIDMNCLDMGGKY" mobile_element 25347421..25347504 /note="source:scaffold_3_CACTA_0395 938 1021" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25348467..25348479) /note="source:CACAO_M_E49559_F88_scaffold_7 7679 7754" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25348480..25348533) /note="source:CACAO_M_S_E14849_F156_scaffold_2 759 813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25348535..25348557 /note="source:CACAO_M_E5892_F98_scaffold_2 1911 1967" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25352001..25361191) /locus_tag="TCM_014957" /note="dbxref CacaoGD:Thecc1EG014957" mRNA complement(join(25352001..25352728,25353010..25353090, 25353516..25353674,25353791..25353847,25353930..25353981, 25354693..25354781,25355956..25356035,25356150..25356351, 25356523..25356615,25356720..25356860,25356945..25357037, 25357133..25357382,25357606..25357778,25358248..25359606, 25359883..25360101,25360164..25360234,25360479..25361191)) /locus_tag="TCM_014957" /product="AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014197" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012919t9" /inference="similar to AA sequence:ricco:30147.m014197" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2096t2" CDS complement(join(25352639..25352728,25353010..25353090, 25353516..25353674,25353791..25353847,25353930..25353981, 25354693..25354781,25355956..25356035,25356150..25356351, 25356523..25356615,25356720..25356860,25356945..25357037, 25357133..25357382,25357606..25357778,25358248..25359606, 25359883..25360032)) /locus_tag="TCM_014957" /note="dbxref ricco:30147.m014197; paralog of Thecc1EG012919t9" /codon_start=1 /product="AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein" /protein_id="EOY22927.1" /db_xref="TAIR:AT5G62310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LE81" /translation="MQSPRFQAIMRVTSGRKMKAPDVKSFSHELNSKGVRPFPLWQSR ALGHIEEVQVAIRVKFDRLKEEVNSDLAVFAGDLVGMLEKTSESHPEWRESVEDLLLV ARRCAKMPACEFWVKCEGIVQNLDDRRQELPMGILKQAHTRLLFILTRCTRLVQFYKE SGYVEDHILGLHKLSDLGVYPEQMCEFAQQNISGQLSGGKEVSEKQRKKSQRQEKSSL MMRQDHVDQHVSNANESAEVDTATSGDSAASSYRMSSWKKLPCAAARNRKGHDTTDTN SKDRSEQSQAKDETPRTETLKTPSVYHPSSRTKKTSWPFWGDHHSVAYENSMICRICE VEIPVVHVEEHSRICTIADRCDLKGLTVNERLERVAETLDKILVSWTPKSTPKSTDTP RESFEATRVSTSSTHEDIDDLSPNRSSHSRRCSEDMLDCVPDVDNAFVMDDLNVLHHV SSEAHLNLATPDLGTSSGGSLTPRSPLLTPRTSQIELLLSGQRRITELENHQQIHKLL DTARSVANANDCDYSTLEYMLERLDELKYAIQDRKADALVVETFGRRIEKLLQEKYVH LCGQIEDEKIDSSNHMADEDSPVDDDTVRSLRASPINPCGKDRTSIEDFEIMKPVSRG AFGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSF TCRENLYLVMEYLNGGDLFSLLRNLGCLDEDMGRVYIAEVVLALEYLHSLNVIHRDLK PDNLLIGQDGHVKLTDFGLSKVGLINSTDDLSGPSLGSSGFLEDDEPEEQPSLKREQR QKHSVVGTPDYLAPEILLGMGHAADWWSVGVILFELLVGLPPFNAETPQLIFDNIMNR YIPWPKVPEEMSYEAYDLIDKLLTENPSERLGSAGAKEVKQHSFFKDINWDTLARQKA MFIPSTEAHDTSYFMSRYIWSPEDEQVQGSSDFDDMTDTCSSGSLSNMQDEDGDECGS LADFSAPTLAVKYSFSNFSFKNLSQLASINYDLVVKSAKESAEAPKPSVP" gene 25362185..25371754 /locus_tag="TCM_014958" /note="dbxref CacaoGD:Thecc1EG014958" mRNA join(25362185..25362278,25364036..25364428, 25364620..25364701,25364784..25364836,25364951..25365005, 25365246..25365384,25365478..25365532,25365654..25365876, 25366168..25366263,25367044..25367163,25367277..25367402, 25367542..25367697,25368233..25368349,25368546..25368671, 25368757..25368824,25369183..25369318,25369426..25369591, 25370936..25371754) /locus_tag="TCM_014958" /product="Zincin-like metalloproteases family protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014196" /inference="similar to AA sequence:ricco:30147.m014196" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6388t4" mobile_element complement(25362766..25363186) /note="source:CACAO_MITE_S123_scaffold_5 436 862" /mobile_element_type="transposon:TIR/MITE" mobile_element 25363260..25363763 /note="source:MITE_Unknow_2_17 231 718" /mobile_element_type="transposon:TIR/MITE" CDS join(25364238..25364428,25364620..25364701, 25364784..25364836,25364951..25365005,25365246..25365384, 25365478..25365532,25365654..25365876,25366168..25366263, 25367044..25367163,25367277..25367402,25367542..25367697, 25368233..25368349,25368546..25368671,25368757..25368824, 25369183..25369318,25369426..25369591,25370936..25371204) /locus_tag="TCM_014958" /note="dbxref ricco:30147.m014196" /codon_start=1 /product="Zincin-like metalloproteases family protein" /protein_id="EOY22928.1" /db_xref="TAIR:AT5G51540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHN0" /translation="MWNLIGRRDLNIHLQCLSKPFINHRHFRTRAVDRQNGSPTGLYG FDHLKSPKGFQRFVDEAIERSGELVDYISGMPSSAEIIRAMDEISDTVCSVVDSAEFC RQTHPAREYVEEATKASMRINEYLHFLNTNHTLYNAVKKAEQDGHLLTEEACRAAHYF RIDFEKGGIHLPSGKLDRVNQLNLHALQLCREYGENIIIDPGHVDIFPASRIPRPIQH LLKPIYRMKSGVSKEALGSLDDEQEKGFRIITEPHTLSSVLQWTADDQVRKLAYLKGN SVPHANHEVLDKLIASRHELAQIMGCKSYAEFVMKLNMTSSPEVVVSFLLEMSNIVKP SADTEFKTIRNLKGDICGQRCVDLEPWDEAYYTAMMRSSAYRLNSSVVASYFSLPQCI EGLKLLVESLFGANFDSVPMAPGESWHPDVLKMCLHHPGEGDLGYLYLDLYSRKGKYP GCATFAIKGGRKISDTEYQLPVMALVFNFSKSHHSSTVRLNHSELETLFHEFGHALHA LLSRTDYQHFSGTRVALDFAETPSHLFEYYARDYRVLRKFARHYSTGEVIPEKLVKSL NRARDMFAATELQRQIFFALVDQTLFGEQLPVPSNTSSIVAHLKRQHCSGKHVDATHL QIRFSHFITYGAGYYSYLYAKCFAATIWKKLCEEDPLSLATGTALRAKLLQHGGAKEP TDLLTDLVGDGIIRCRNGGIVPDISSYLEEVKLLDRRKAGLFL" gene complement(25368131..25376123) /locus_tag="TCM_014959" /note="dbxref CacaoGD:Thecc1EG014959" mRNA complement(join(25368131..25368347,25368544..25368672, 25368758..25368826,25369185..25369318,25369426..25369593, 25370938..25372016,25372130..25372220,25372326..25372638, 25372734..25372832,25373168..25373280,25373418..25373673, 25373847..25373936,25374110..25374323,25374592..25374889, 25375000..25375111,25375234..25375383,25375485..25375618, 25375722..25376057)) /locus_tag="TCM_014959" /product="Hydrolase, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014194" /inference="similar to AA sequence:Phytozome:POPTR_0015s14550.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc905t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6386t2" mRNA complement(join(25370834..25372016,25372130..25372220, 25372326..25372436,25372591..25372638,25372734..25372832, 25373168..25373280,25373418..25373673,25373847..25373936, 25374110..25374323,25374592..25374889,25375000..25375111, 25375234..25375383,25375485..25375618,25375722..25376123)) /locus_tag="TCM_014959" /product="Hydrolase, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014194" /inference="similar to AA sequence:Phytozome:POPTR_0015s14550.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6386t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6386t2" CDS complement(join(25371916..25372016,25372130..25372220, 25372326..25372436,25372591..25372638,25372734..25372832, 25373168..25373280,25373418..25373673,25373847..25373936, 25374110..25374323,25374592..25374889,25375000..25375111, 25375234..25375383,25375485..25375618,25375722..25375974)) /locus_tag="TCM_014959" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Hydrolase, putative isoform 1" /protein_id="EOY22929.1" /db_xref="Phytozome:POPTR_0015s14550.1" /db_xref="TAIR:AT4G25290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9Q0" /translation="MALLAFPRSLPLPFPPFYFFSPRPTPRPSFICSLSAGAGRTKSG SAILWFKHDLRLDDHPALVAAAETHRSLLPLYVFDHRILSRYSDEMLELVLFALEDLR NSLKEQGSNLMIRFGSAENVITELVKEVKATDVFVEEEVEYEMRQIVGVVKDTLETSS SLDGNPDIVMWRTPFYDVKNLKDLPASYNDFKKLKLLPTSPLPPVTLPNVETKLDWGP LPTFSDLKEFIKEKPGKGSWSLMKEMPAEAILKEKLSKPSGTNRNSLSVESIERRRLD KSVFVTRKGDVVAGGTNSLLNASAAYLRYLEGTARDDWQEVHERLRNAESRDGASFTS LFGPALCLGIISRRRVHYEAITYERERNAGFLSPFGYSAATVAAAADAVCCMEWFWLL ALKSQLSNEGLYSVRIWRWRGHLIQYTVVGNEGPAIFLVHGFGAFLEHYRDNINGMAE SGNRVWAITMLGFGKSEKPNVMYTELLWAELLRDFIIEVVGEPVHIVGNSIGGFFVAI VASLWPTLVKSIILINSAGDVIPGFSSQRFSNERGTSGAARLGAQLLLFYLKLNIRNI VKNFYPTKTKRADDWLINEMLRASYDPGVLVVLESIFSLDLSIPLNFLLQGYEEKVLI VQGMKDPLSDSKAKLAMLKEHCAGLVIRELDAGHCPHDEQPEKVNSIICEWIVAVERK LTAESHL" CDS complement(join(25372447..25372638,25372734..25372832, 25373168..25373280,25373418..25373673,25373847..25373936, 25374110..25374323,25374592..25374889,25375000..25375111, 25375234..25375383,25375485..25375618,25375722..25375974)) /locus_tag="TCM_014959" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Hydrolase, putative isoform 2" /protein_id="EOY22930.1" /db_xref="Phytozome:POPTR_0015s14550.1" /db_xref="TAIR:AT4G25290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9Q0" /translation="MALLAFPRSLPLPFPPFYFFSPRPTPRPSFICSLSAGAGRTKSG SAILWFKHDLRLDDHPALVAAAETHRSLLPLYVFDHRILSRYSDEMLELVLFALEDLR NSLKEQGSNLMIRFGSAENVITELVKEVKATDVFVEEEVEYEMRQIVGVVKDTLETSS SLDGNPDIVMWRTPFYDVKNLKDLPASYNDFKKLKLLPTSPLPPVTLPNVETKLDWGP LPTFSDLKEFIKEKPGKGSWSLMKEMPAEAILKEKLSKPSGTNRNSLSVESIERRRLD KSVFVTRKGDVVAGGTNSLLNASAAYLRYLEGTARDDWQEVHERLRNAESRDGASFTS LFGPALCLGIISRRRVHYEAITYERERNAGFLSPFGYSAATVAAAADAVCCMEWFWLL ALKSQLSNEGLYSVRIWRWRGHLIQYTVVGNEGPAIFLVHGFGAFLEHYRDNINGMAE SGNRVWAITMLGFGKSEKPNVMYTELLWAELLRDFIIEVVGEPVHIVGNSIGGFFVAI VASLWPTLVKSIILINSAGDVIPGFSSQRFSNERGTSGAARLGAQLLLFYLKLNIRNI VKNFYPTKTKRADDWLINEMLRAVSSLLFEMYEHARTHIHTNLCAHSRNHKMLFSGTM IKYLCPLKKTDL" gene 25376995..25378720 /locus_tag="TCM_014960" /note="dbxref CacaoGD:Thecc1EG014960" mRNA join(25376995..25377450,25378313..25378720) /locus_tag="TCM_014960" /product="Low psii accumulation2, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014193" /inference="similar to AA sequence:ricco:30147.m014193" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10833t00001" CDS join(25377021..25377450,25378313..25378458) /locus_tag="TCM_014960" /note="dbxref ricco:30147.m014193" /codon_start=1 /product="Low psii accumulation2, putative" /protein_id="EOY22931.1" /db_xref="TAIR:AT5G51545.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICV1" /translation="MALQIHTPSSFTNGLYHRNFIFPKPIFSIKSQKPTDDAEPSPEP SSTPKKPAAPGQGFGSSSPSSSSSLPSGKSSISSGKKKQKGKRVRASIIRRSPVEKPA FVSKEEEAKAEEQRKNESAFLLAWLGLGGVILVQGIVLAASGFLPEEWDKFFVKYLYP SFTPTVLLFLAGTVAYGVLKYLQNENLKDQN" gene 25381333..25382916 /locus_tag="TCM_014961" /note="dbxref CacaoGD:Thecc1EG014961" mRNA join(25381333..25381467,25382227..25382391, 25382579..25382916) /locus_tag="TCM_014961" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2172t1" CDS join(25382289..25382391,25382579..25382793) /locus_tag="TCM_014961" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22932.1" /translation="MECIWSIKGWMTLQATETHNKRSMSPLSLVRRLRETSNKCCSFT PETGRRSDQVTCHSNYLNSQKVMLLVVCPTKSISRSSVFWTTKSLDQRVPVGFSCSKP IQC" mobile_element complement(25384105..25384818) /note="source:CACAO_on_E445_scaffold_2 1 703" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(25384772..25386821) /locus_tag="TCM_014962" /note="dbxref CacaoGD:Thecc1EG014962" mRNA complement(25384772..25386821) /locus_tag="TCM_014962" /product="EXORDIUM like 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s14490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007565t3" /inference="similar to AA sequence:Phytozome:POPTR_0015s14520.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc295t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc295t4_C2" CDS complement(25385746..25386762) /locus_tag="TCM_014962" /note="paralog of Thecc1EG007565t3" /codon_start=1 /product="EXORDIUM like 3" /protein_id="EOY22933.1" /db_xref="Phytozome:POPTR_0015s14520.1" /db_xref="TAIR:AT5G51550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93YZ5" /translation="MHRVPVLLSLIAAATLLIVTPVIGYRPWPHLKPNSSDLMFGGSK KFEGSSEFVHMRYHMGPVLTANITIHTIWYGRWQKSQKKIIREFINSISAVNAKHPSV TGWWKTVQLYTDQTGANISRTVHLGKEKNDRFYSHGKSLTRLSIQSVIKSAVTARTKP LPINPKSGLYLLLTSDDVNVQDFCGQVCGFHYFTFPSIVGYTLPYAWVGNSAKLCPGI CAYPFAVPEYMPGLKPLKSPNNDVGVDGMISVIGHEVAELATNPLVNAWYAGQDPVAP VEIADLCEGIYGTGGGGSYTGQLLNDKDGATYNMNGIRRRYLVQWVWNHIVSYCTGPN ALDQ" gene complement(25393017..25394920) /locus_tag="TCM_014963" /note="dbxref CacaoGD:Thecc1EG014963" mRNA complement(join(25393017..25394045,25394125..25394920)) /locus_tag="TCM_014963" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025367t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(25393846..25394045,25394125..25394899)) /locus_tag="TCM_014963" /note="paralog of Thecc1EG025367t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22934.1" /translation="MNQLGKGVKLSLPDPTKLVQSGAPNDVVRLRGDGLPFLIFLLLA FQLSFFSLCRRYLLFFFKDAVFLFSSQIITHRRLTLQLLLLSPAANLQAVAPPTGGKP AQISLLLPAAKLQAVAPPTGGKTVQISLLLPAANTPPFFLYFFFCPALLAGSRTTLPP SLFFCSLVALHCLEKLFLCCRFSPSHLYPISGLWRGCSTTALSLGTQGQVPLTCQTRI FRVWQVREVPGRVRPHPASRTSLPFFPSFFVHCIFSLVSTGTNTWDRFELRIHKRLID LYSNYSGARCGSWKSLLQIFDYCTCQDFQISEFLYIFELNNAVFYGGK" mobile_element 25394126..25394352 /note="source:CACAO_M_E44210_F112_scaffold_5 10001 10226" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25394156..25394420 /note="source:CACAO_M_E69938_F9_scaffold_9 3600 3829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25394409..25394524 /note="source:CACAO_M_E69938_F9_scaffold_9 3989 4110" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25394718..25394842) /note="source:INTACT58_F125_scaffold_5-int 16923 17030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25395595..25396434 /note="source:CACAO_M_E69938_F9_scaffold_9 4835 5685" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25397614..25399987 /locus_tag="TCM_014964" /note="dbxref CacaoGD:Thecc1EG014964" mRNA join(25397614..25398570,25399102..25399987) /locus_tag="TCM_014964" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014028t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage" CDS join(25397911..25398570,25399102..25399800) /locus_tag="TCM_014964" /note="paralog of Thecc1EG014028t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22935.1" /translation="MASSSAGPLNIYRNDYEIKLQMRQIQQEKGDCLTQGHISNLPER VHLDLQQNDLTEMVGIWEQWRRAHRDNFQNKYGHIAWLLYVPVDDQMLRAIVQFWDPS YRCFVFNKVDMTPTIEEYSSLLRIDHMQPDKIYWRAQKTGHRRKLAKLLGMTTVEVDQ HLKKKGDTECLPWSFLNGYIKKHMEDEQGLLAFAMAIYGLVVFPKVLGHVEVSVIDFF DQGRVTDEVTTGYHTWHDQRVKNVIHPPKNPSKHPVNPEPQDVLLESELTRKRLEKEM MNMKRRHEDELEEVKKETARKVRVALKERDEWQSKFEEVSVANSSLLARIQELQSANN ALQHEVQRKEQTIQELKNDCDMLETAMEGYKAQYEAVRQEYFQMRERNNSCAQSLQRK EAEMQWILRQMREVAFRARVMADKTEELRREILPKDELSERLISHLKMVRDQYDKVGF SF" gene 25399996..25403694 /locus_tag="TCM_014965" /note="dbxref CacaoGD:Thecc1EG014965" mRNA join(25399996..25400121,25402390..25403694) /locus_tag="TCM_014965" /product="Gag-pro-like protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040267" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005366t1" /inference="similar to AA sequence:Phytozome:Glyma01g09570.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3325t1" CDS join(25400061..25400121,25402390..25403669) /locus_tag="TCM_014965" /note="paralog of Thecc1EG005366t1" /codon_start=1 /product="Gag-pro-like protein" /protein_id="EOY22936.1" /db_xref="Phytozome:Glyma01g09570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0E2V7" /translation="MGDEHSERMDKIEKKQEEIMEKEAAEFLKFIKHSEYNVIEQLNR MPARISLLSLLLSSEPHRNSLMKILNQAYVDHDISVENLDYIVGNISVGNIISFSDEE IPSGGRGNYKALHITTKCKGCTVAKVLLDNGSSLNVMPMRTLARLPINMSYMRKSQMI VRAFDGTRREVVGDIEIPVEIGPCTFTIEFQVMDIAPSYNYLLGRPWIHMAGAIPSSL HQKVKFIVEGKIVCVNGEEDLLISKPADTPYVEAAEEVPECSFRSFEFVNTTYVGEGT TPPIPRLSKTTKMIVNQILGKGYRAGAGLGKELQGIRSPIRTTKNEERFGLGYKPTKK EREEMIAERRKERLARFKGHELEIRGMTYPHLYKTFRSGGCIFPESLTVENQESVSAL GGTFSDLSICATEEGEEQPRNVDEIPTTYLGPPNLKLSNWTTMSLPVTCDSISK" mobile_element complement(25401370..25401841) /note="source:CACAO_M_E58877_F5_scaffold_9 14516 14987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25404638..25405117) /note="source:CACAO_M_E58877_F5_scaffold_9 11829 12308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25408332..25408891) /note="source:CACAO_M_E58877_F5_scaffold_9 8100 8672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25411242..25412055 /note="source:INTACT579_F10_scaffold_3-int 4954 5756" /mobile_element_type="retrotransposon:LTR/Copia" gene 25412816..25415081 /locus_tag="TCM_014967" /note="dbxref CacaoGD:Thecc1EG014967" mRNA join(25412816..25412976,25413463..25413591, 25413794..25413907,25414652..25415081) /locus_tag="TCM_014967" /product="Ribosomal protein S10p/S20e family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018553001" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400001846" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:PASA:2:TSA:puevd3b014455t1a3; alternateUTRof:Thecc1EG014967t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9201t1" mRNA join(25412816..25412976,25413460..25413591, 25413794..25413907,25414652..25414820) /locus_tag="TCM_014967" /product="Ribosomal protein S10p/S20e family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018553001" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400001846" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9201t1" CDS join(25413480..25413591,25413794..25413907, 25414652..25414794) /locus_tag="TCM_014967" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ribosomal protein S10p/S20e family protein isoform 1" /protein_id="EOY22937.1" /db_xref="Phytozome:PGSC0003DMP400001846" /db_xref="TAIR:AT3G47370.3" /db_xref="UniProtKB/TrEMBL:UniRef50_P60866" /translation="MAYAAMKPTKPGLEEPQEQIHKIRITLSSKNVKNLEKVCADLVR GAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVK QITSITIEPGVEVEVTIADS" CDS join(25413480..25413591,25413794..25413907, 25414652..25414794) /locus_tag="TCM_014967" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ribosomal protein S10p/S20e family protein isoform 1" /protein_id="EOY22938.1" /db_xref="Phytozome:PGSC0003DMP400001846" /db_xref="TAIR:AT3G47370.3" /db_xref="UniProtKB/TrEMBL:UniRef50_P60866" /translation="MAYAAMKPTKPGLEEPQEQIHKIRITLSSKNVKNLEKVCADLVR GAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVK QITSITIEPGVEVEVTIADS" gene complement(25415077..25420681) /locus_tag="TCM_014968" /note="dbxref CacaoGD:Thecc1EG014968" mRNA complement(join(25415077..25416075,25416794..25417690, 25417966..25418351,25420123..25420681)) /locus_tag="TCM_014968" /product="Cytochrome P450, family 706, subfamily A, polypeptide 6, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018547001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014970t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018547001" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS complement(join(25415449..25416075,25416794..25417690, 25417966..25417971)) /locus_tag="TCM_014968" /note="paralog of Thecc1EG014970t1" /codon_start=1 /product="Cytochrome P450, family 706, subfamily A, polypeptide 6, putative" /protein_id="EOY22939.1" /db_xref="Phytozome:GSVIVT01018547001" /db_xref="TAIR:AT4G12320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAM2" /translation="MSRSSNSFGSRLAIACYAWWVKKFTKNVPPLPPGPPGLPILGNL PFLQPDLHRYFTKLSQIYGPIIKLQLGSKTCIVVSSASVAKEVLKDHDAIFANRDPPT VAIIGTYGACDMVWRPNGPEWRKLRRLVVSEIMSNRSLDDCYALRRREVRAMVKDIYG KVGSPVNIGDQMFLTSLDVILSVLWGGSLHGEERSRLGIEFRQFVVEFVELLGAPNIS DLFPFLTRFDLQGYQTRMEKASTWFDEIFESVIAHRIKFDQPDVGEGKKKEQKKDFLQ LLMELNQQGDYKSSLSKSETKALLLDVIIAGTDATSISLEWAMTELLRHPDKMRRAVE ELDSVVGDQNIVEEFHIPQLVYLNATVKETFRFHPPIPLLVSHRPSATCTVAGHTIPK DSRVLLNAWMIQRDPEFWEHPLRFEPERFLQDAEKGNYQGNNFHFIPFGSGRRICAGI PLADKMVTNVLATLLHSFEWKTPDGTKPDIHEKFGFALKKTEPLVAIPAARLSNSEQY Q" mobile_element complement(25418756..25419029) /note="source:CACAO_on_E373_scaffold_1 1 278" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(25419906..25419955) /note="source:CACAO_M_S_E144962_F231_scaffold_10 1446 1495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25420604..25420903) /note="source:CACAO_on_E2_scaffold_1 328 620" /mobile_element_type="transposon:TIR/hAT" mobile_element 25420904..25426073 /note="source:INTACT742_F45_scaffold_3-int 1 5170" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25426074..25426238) /note="source:CACAO_on_E21_scaffold_4 131 289" /mobile_element_type="transposon:TIR/hAT" mobile_element 25426163..25426248 /note="source:CACAO_on_E222_scaffold_5 645 727" /mobile_element_type="transposon:TIR/hAT" mobile_element 25426316..25427360 /note="source:CACAO_hAT_E1480_scaffold_3 1 1045" /mobile_element_type="transposon:TIR/hAT" mobile_element 25427646..25427721 /note="source:CACAO_hAT_E1468_scaffold_3 1785 1858" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(25428803..25428990) /note="source:CACAO_Again_on_S_E124_scaffold_3 2583 2768" /mobile_element_type="transposon:TIR/hAT" mobile_element 25429325..25429413 /note="source:scaffold_5_CACTA_0614 3295 3396" /mobile_element_type="transposon:TIR/CACTA" gene complement(25429389..25434231) /locus_tag="TCM_014970" /note="dbxref CacaoGD:Thecc1EG014970" mRNA complement(join(25429389..25429748,25431760..25432766, 25433207..25434231)) /locus_tag="TCM_014970" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018547001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014973t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018547001" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6419t1" mobile_element 25430339..25430536 /note="source:CACAO_hAT_E1487_scaffold_3 2 209" /mobile_element_type="transposon:TIR/hAT" mobile_element 25430537..25430605 /note="source:MITE_hAT_13 361 423" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(25430712..25431119) /note="source:CACAO_hAT_E1792_scaffold_4 21 449" /mobile_element_type="transposon:TIR/hAT" mobile_element 25431079..25431090 /note="source:MITE_hAT_22 1004 1069" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(25431091..25431145) /note="source:CACAO_on_E206_scaffold_2 24 78" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(25431264..25431483) /note="source:scaffold_1_CACTA_0016 1413 1640" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(25432140..25432766,25433207..25434193)) /locus_tag="TCM_014970" /note="paralog of Thecc1EG014973t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY22940.1" /db_xref="Phytozome:GSVIVT01018547001" /db_xref="TAIR:AT4G12300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAM2" /translation="MPNLSSMVAVLACGGLSWCSNDNAEHTIIRATATLLAAALAIAC HAWWVQKFTKSVPPLPPGPRGLPVLGNLPFLQPDLHRYFSKLSQIYGPIIKLQFGSKI CIVVSSASVAKEVLKDHDATFANRDPPTVGIIGTYGGCDMVWRPNGPEWRKLRRLVVR EIMSKTSLDDCYALRRRQVREMVKDIYGKVGSPLNIGDQMFLTSLNVILSMLWGGSLH GEERSRLGIEIRQVVAESVELIGAPNISDLFPFLTRFDLQGYQSRMKKALKWMDEILE SVIAHRRKVDQPDIGEGKNKEQSKDFLQLLLELNQQGDYKSSLSMNEVKALLLDMIVA GTDTTSTTVEWAMTELLRHPDKLRSAVEELDRVVGAGNIVEESHLPKLVYLDAAIKET FRFHPPSPLLVPRSPSTTCTVAGYTIPKDSRVLFNAWAIQRDPEFWEYPLRFEPERFL KDAEKGNYLGNNFHFIPFASGRRICVGIPLAEKMVTHVLATLLHSFEWKLPEGTKPDI QEKFGIVLKKMEPLVAIPAARLSSSEQYQ" gene complement(25434281..25462101) /locus_tag="TCM_014971" /note="dbxref CacaoGD:Thecc1EG014971" mRNA complement(join(25434281..25434508,25459585..25459707, 25461597..25462101)) /locus_tag="TCM_014971" /product="Cytochrome P450, family 706, subfamily A, polypeptide 6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014970t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018547001" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage" mobile_element complement(25435282..25435732) /note="source:CACAO_on_E2_scaffold_1 163 620" /mobile_element_type="transposon:TIR/hAT" mobile_element 25435762..25436503 /note="source:CACAO_Again_on_S_E297_scaffold_10 1 766" /mobile_element_type="transposon:TIR/hAT" mobile_element 25436804..25437094 /note="source:CACAO_M_E4300_F2_scaffold_2 1 290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25437082..25438420 /note="source:CACAO_M_E49809_F2_scaffold_7 567 1898" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25438421..25438838 /note="source:CACAO_M_S_E5210_F12_scaffold_1 7964 8410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25447299..25448452) /note="source:CACAO_M_S_E52027_F3_scaffold_5 4425 5565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25448452..25448713 /note="source:CACAO_M_E69958_F2_scaffold_9 1901 2162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25448814..25450686 /note="source:INTACT525_F2_scaffold_2-int 2214 4087" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25450848..25450868) /note="source:CACAO_M_S_E52027_F3_scaffold_5 5646 5679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25450869..25451433 /note="source:CACAO_on_E459_scaffold_2 1323 1885" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(25451434..25452162) /note="source:CACAO_M_S_E52027_F3_scaffold_5 4425 5645" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25452152..25452903) /note="source:INTACT159_F2_scaffold_6-int 3469 4222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25453004..25454775 /note="source:CACAO_M_E69958_F2_scaffold_9 4257 6029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25455722..25456298 /note="source:CACAO_M_E69958_F2_scaffold_9 2595 3174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25456700..25456903) /note="source:CACAO_on_E71_scaffold_9 2449 2649" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(25458170..25458405) /note="source:MITE_hAT_11 855 1090" /mobile_element_type="transposon:TIR/MITE" mobile_element 25458359..25458429 /note="source:CACAO_on_E71_scaffold_9 2559 2632" /mobile_element_type="transposon:TIR/hAT" mobile_element 25458377..25458457 /note="source:MITE_hAT_19 374 444" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(25458527..25458924) /note="source:CACAO_on_E2_scaffold_1 28 519" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(25459092..25459307) /note="source:scaffold_1_CACTA_0016 1413 1640" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(25459618..25459707,25461597..25462022)) /locus_tag="TCM_014971" /note="paralog of Thecc1EG014970t1" /codon_start=1 /product="Cytochrome P450, family 706, subfamily A, polypeptide 6" /protein_id="EOY22941.1" /db_xref="Phytozome:GSVIVT01018547001" /db_xref="TAIR:AT4G12320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAM2" /translation="MPNLSSMVAVLACGGLSWCSNDNAEHTIIRATATLLAAALAIAC HAWWVQKFTKSVPPLPPGPRGLPVLGNLPFLQPDLHRYFSKLSQIYGPIIKLQFGSKI CIVVSSASVAKEVLQDHDAIFANRDPPTVAIIGTYGGCDMNPEQSSLPTVSIPKAIKP TTTSDEPNAVI" mobile_element 25462963..25463128 /note="source:CACAO_on_E241_scaffold_112 386 484" /mobile_element_type="transposon:TIR/hAT" mobile_element 25463518..25464250 /note="source:CACAO_Again_on_S_E297_scaffold_10 1 766" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(25464552..25464597) /note="source:CACAO_M_E11804_F2_scaffold_2 6106 6151" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25465227..25466168) /note="source:INTACT503_F2_scaffold_1-int 3728 4669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25466169..25466548 /note="source:CACAO_M_S_E5210_F12_scaffold_1 7964 8370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25466650..25469454 /note="source:CACAO_M_E69958_F2_scaffold_9 3222 6029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25470607..25470810) /note="source:CACAO_on_E71_scaffold_9 2449 2649" /mobile_element_type="transposon:TIR/hAT" gene complement(25471264..25480591) /locus_tag="TCM_014973" /note="dbxref CacaoGD:Thecc1EG014973" mRNA complement(join(25471264..25472463,25472944..25473909, 25478563..25479049,25479141..25479526,25479834..25480302, 25480538..25480591)) /locus_tag="TCM_014973" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018547001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014970t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400008476" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00219t00002" CDS complement(join(25471837..25472463,25472944..25473909, 25478563..25479049,25479141..25479526,25479834..25479932)) /locus_tag="TCM_014973" /note="paralog of Thecc1EG014970t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY22942.1" /db_xref="Phytozome:PGSC0003DMP400008476" /db_xref="TAIR:AT4G12300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAM2" /translation="MALPSGSNKSSTSHQSSSMTKSCFKPSSIAIGNVAVPACEGLSW CCHGLAAYTVIRVAAIMLAAAQATFCYAWWAKKFTTSKPPLPPGPPGLPILGNFPFIQ PDFHRYVVKFSQIYGPIIKLQLGSKICIVISSPSVAKKVLKDHDAIFANREAPAGAIV GISLDACYTLRRREVRQMVKYIYGKVCSAVKIGEQMFLTSLNVMLSMLWGGSLNGEER SRFGIEFRKRLVEFVELVGAPNVSDVFPVLTPFDLQGIQSKAKKNLSWLYEIFESVIV HRTKVEQADGEGKKKEESKDFLQHLLELNQRGDDKTSLSMNEAKALLLVAVLACGGLS WSSNDNAEHTIIREAATLLAAALAIACYAWWVQKFTKSVPPLPPGPPGLPILGNLPLL QPDLHRYISKLSQIHGPIIKLQLGSKICIVVSSASVAKEVLKDHDAIFANRDPPTVAI IGTYGGCDMAWRSNGPEWRKLRRLVVREIMSNTSLDNCYALRRREVREMVKDIYGKVG SPVNIGDQMFLTNLNVIVSMLWGGSLNGEERSRLGIEFRQVVVEFVELLGAPNISDLF PFLTRFDLQGYQSRTKKALKWMDEILESVIAHRRKVDQPDIGEGKNKEQSKDFLQLLL ELNQQGDYKSSLSMNEVKALLLDMIVAGTDTTSTTVEWAMTELLRHPDKQRRAVEELD RVVGAGNIVEESHLPQLVYLDAAIKETFRFHPPIPLLVPRSPSTTCTVAGYTIPKDSR VLFNAWAIQRDPEFWEYPLRFEPERFLKDAEKGNYLGNNFHFIPFGSGRRICVGIPLA EKMVTHVLATLLHSFEWKLPEGTKPDIQEKFGIVLKKMEPLVAIPAARLSSSEQYQ" mobile_element complement(25475861..25476699) /note="source:CACAO_PIF_E144_scaffold_10 1203 2012" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(25476698..25477208) /note="source:CACAO_PIF_E144_scaffold_10 1439 1943" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25476987..25477234 /note="source:scaffold_6_CACTA_0709 3097 3334" /mobile_element_type="transposon:TIR/CACTA" gene complement(25480638..25483311) /locus_tag="TCM_014974" /note="dbxref CacaoGD:Thecc1EG014974" mRNA complement(join(25480638..25480662,25481379..25481438, 25481552..25481661,25482323..25482446,25482621..25482906, 25483281..25483311)) /locus_tag="TCM_014974" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047012t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14450.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc645t1" CDS complement(join(25481402..25481438,25481552..25481661, 25482323..25482446,25482621..25482703)) /locus_tag="TCM_014974" /note="paralog of Thecc1EG047012t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22943.1" /db_xref="Phytozome:POPTR_0012s14450.1" /translation="MVLGLRQFMARAGNGGREPVLDSDNGEEQVVWLSDVDSAKWLCH WFHVSVAATVSGDPEACPSPCIYTQIETEADEDESGDSDSEFNEVLGLSKVTEMRLIP SDASGYSVSDILLVC" gene complement(25482877..25485451) /locus_tag="TCM_014975" /note="dbxref CacaoGD:Thecc1EG014975" mRNA complement(join(25482877..25482906,25483281..25483492, 25484403..25484548,25484890..25484977,25485050..25485162, 25485315..25485451)) /locus_tag="TCM_014975" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage" CDS complement(join(25483453..25483492,25484403..25484548, 25484890..25484977,25485050..25485162,25485315..25485359)) /locus_tag="TCM_014975" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22944.1" /translation="MVLVQMASAEALFPLCGLVVYCLNGSRGGDKAAVNYDAEFFQPL FCASSGELWSVYAHQVFDDSPNWMTSTAQGVMLALAEGDNVLANVVRFQRKLTTLQVV LDVGLKLKTLIIFIADVGCLRRYGSNVLRISIQNEEGFDMV" mobile_element complement(25483735..25483798) /note="source:CACAO_M_E34934_F98_scaffold_5 2039 2088" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25485728..25488951) /locus_tag="TCM_047011" /note="dbxref CacaoGD:Thecc1EG047011" mRNA complement(join(25485728..25486001,25486096..25486883, 25487313..25488268,25488881..25488951)) /locus_tag="TCM_047011" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g34250.1.7" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014970t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018547001" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc465t13" CDS complement(join(25486257..25486883,25487313..25488268, 25488881..25488890)) /locus_tag="TCM_047011" /note="paralog of Thecc1EG014970t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY22945.1" /db_xref="Phytozome:GSVIVT01018547001" /db_xref="TAIR:AT4G12320.1" /translation="MDRFLACEGWSWCCEGLATYNIIRAAAIVLAAALATFCYAWWAN KFTKSTPPLPPGPPGMPILGNLRFIQPDFYQYVVKLSQIYGPIIKLQLGSKICIVISS PSVAKEVLKDHDAIFANHDTPAGAIVGMYGGLDIAWRPNGPELHKLRKLVVRGIMSKR SLDACYTLRRREIRRMVKDIYGKVGSPVNIGEQMFLTSLNVMVSMLWGDSLNGEERST LGIEFRRRLVEFVELFGAPNVSDLFPVLTPFDLQGIQSKTKKNLSWFYEFFESVIVHR TKVEQADGEGKKKEESKDFLQQLLELNQRGDDETSLSMNEVKALMLDLIVGATDTTST TVEWAMTVLLRHPNKMSRVLEELEAVVGNQNIVEESHLPRLLYLEAVVKETLRMYPPT PLLLPRKPSMTCTVAGYTIPKDSRILINACSIQRDPEIWEGPLQFEPERFLKDTEKGN YLGNNFHFFPFGSGRRICAGIPMAERMIAHVLAALVHSFEWKLPEGTKLDTQEKFGIL LKKMEPLAAIPAARLCNSEQYQ" gene complement(25489000..25491747) /locus_tag="TCM_047012" /note="dbxref CacaoGD:Thecc1EG047012" mRNA complement(join(25489000..25489286,25489749..25489843, 25489936..25489995,25490116..25490175,25490285..25490399, 25491226..25491349,25491467..25491747)) /locus_tag="TCM_047012" /product="Nucleotide-sensitive chloride conductance regulator (ICln) family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14500.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14450.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9060t3" CDS complement(join(25489203..25489286,25489749..25489843, 25489936..25489995,25490116..25490175,25490285..25490399, 25491226..25491349,25491467..25491633)) /locus_tag="TCM_047012" /codon_start=1 /product="Nucleotide-sensitive chloride conductance regulator (ICln) family protein" /protein_id="EOY22946.1" /db_xref="Phytozome:POPTR_0012s14450.1" /db_xref="TAIR:AT5G62290.2" /translation="MVIGLRQFMARVGNGAGEPVLDTDNVEELVHVQPSVSIALGNRA PESPGTLYITTKQVIWLSDVDSAKGYAVDFLSLSLHAVSRDPEAYHSPCIYTQIETEA DEDVSEDSDSECNEVLDLSKVTEMRLIPSDASQLDTLFQMFCECAELNPEPIEGEEEG HNWVFSADQLEDEAAEGDDSEWHFPQNPTNSIGHSNGDHDLARTVLELQINDQRFEDA EEFEQVSDSSHHHHHQ" mobile_element 25492648..25493511 /note="source:scaffold_2_CACTA_0244 13873 14668" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25493020..25493527 /note="source:INTACT135F_F90_scaffold_2-int 13503 13997" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(25494421..25496136) /locus_tag="TCM_014977" /note="dbxref CacaoGD:Thecc1EG014977" mRNA complement(join(25494421..25494691,25495288..25495474, 25495638..25495776,25495860..25495932,25496021..25496136)) /locus_tag="TCM_014977" /product="Ribosomal protein S13A" /inference="alignment:exonerate- protein:2:ricco:30174.m008862" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005525t1" /inference="similar to AA sequence:Phytozome:GSVIVT01027637001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11832t00001" CDS complement(join(25494658..25494691,25495288..25495474, 25495638..25495776,25495860..25495932,25496021..25496043)) /locus_tag="TCM_014977" /note="paralog of Thecc1EG005525t1" /codon_start=1 /product="Ribosomal protein S13A" /protein_id="EOY22947.1" /db_xref="Phytozome:GSVIVT01027637001" /db_xref="TAIR:AT4G00100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q69UI1" /translation="MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKG LTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHL ERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA" mobile_element complement(25498185..25498304) /note="source:scaffold_4_CACTA_0483 1041 1157" /mobile_element_type="transposon:TIR/CACTA" gene 25503162..25507048 /locus_tag="TCM_014978" /note="dbxref CacaoGD:Thecc1EG014978" mRNA join(25503162..25504080,25504620..25504880, 25504977..25505846,25506149..25507048) /locus_tag="TCM_014978" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s14430.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005524t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14430.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04405t00001" mRNA join(25503352..25504080,25504620..25504880, 25504977..25505515,25505642..25505846,25506149..25506991) /locus_tag="TCM_014978" /product="Leucine-rich repeat protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s14430.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005524t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14430.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc248t11; inference alignment:Newbler:10:TSA:cgbaB_g04405t00001" CDS join(25503657..25504080,25504620..25504880, 25504977..25505846,25506149..25506630) /locus_tag="TCM_014978" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005524t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY22948.1" /db_xref="Phytozome:POPTR_0012s14430.1" /db_xref="TAIR:AT5G51560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22138" /translation="MVSTVPLFFFFILFTTQCCFSANTELRALLDMKAALDPDDKYLS SWTINGDPCDRSFEGVGCNQKGQIANISLQGKGLSGKVSSAITGLKHLTGLYLHYNSL YGDIPREIANLTLLSDLYLNMNNLSGEIPPEIGNMGSLQVLQLCYNQLTGSIPTQLGS LKKLNVLALQSNQLTGAIPASLGDVGTLMRLDLSFNRLFGSIPMKIADAPLLEVLDIR NNSLSGNVPLALKRLNDGFLFQNNLGLCGSGFSSLEACNTSDHINPNRPEAYGPGTTG RPREIPETANLQLPCEPTQCSKPSKSQRGPILVGLIVVTVALSAIGILTFTQYRRRKQ KLGSSFEISDRRLSTDQAKGVYRKNGSPLISLEYANGWDPLADSRNFTGFAQDVFQSF RFNLEEVETATQYFSEVNLLGKSNFSATYKGILRDGSAVAIKSISKTSCKSDDAEFLK GLNILASLKHENLVRLRGFCCSKARGECFLIYDFVPNGNLLRCLDVKDGDGQVLEWST RVSIVKGIAKGIAYLHGYKANKPALVHQNISAEKVLIDQRFNPLLSDSGLHNLLTNDI VFAALKASAAMGYLAPEYTSTGRFTEKSDVYAYGVLVFQVLSGKRKVTSLVRLGAESC RFQDFIDPNLHGRFFEYEAAKLARIAWLCTHDSPIERPSMDAVVQELGNCSSCL" CDS join(25503657..25504080,25504620..25504880, 25504977..25505515,25505642..25505846,25506149..25506630) /locus_tag="TCM_014978" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005524t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 2" /protein_id="EOY22949.1" /db_xref="Phytozome:POPTR_0012s14430.1" /db_xref="TAIR:AT5G51560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22138" /translation="MVSTVPLFFFFILFTTQCCFSANTELRALLDMKAALDPDDKYLS SWTINGDPCDRSFEGVGCNQKGQIANISLQGKGLSGKVSSAITGLKHLTGLYLHYNSL YGDIPREIANLTLLSDLYLNMNNLSGEIPPEIGNMGSLQVLQLCYNQLTGSIPTQLGS LKKLNVLALQSNQLTGAIPASLGDVGTLMRLDLSFNRLFGSIPMKIADAPLLEVLDIR NNSLSGNVPLALKRLNDGFLFQNNLGLCGSGFSSLEACNTSDHINPNRPEAYGPGTTG RPREIPETANLQLPCEPTQCSKPSKSQRGPILVGLIVVTVALSAIGILTFTQYRRRKQ KLGSSFEISDRRLSTDQAKGVYRKNGSPLISLEYANGWDPLADSRNFTGFAQDVFQSF RFNLEEVETATQYFSEGLNILASLKHENLVRLRGFCCSKARGECFLIYDFVPNGNLLR CLDVKDGDGQVLEWSTRVSIVKGIAKGIAYLHGYKANKPALVHQNISAEKVLIDQRFN PLLSDSGLHNLLTNDIVFAALKASAAMGYLAPEYTSTGRFTEKSDVYAYGVLVFQVLS GKRKVTSLVRLGAESCRFQDFIDPNLHGRFFEYEAAKLARIAWLCTHDSPIERPSMDA VVQELGNCSSCL" mobile_element 25509136..25509484 /note="source:CACAO_M_S_E90022_F9_scaffold_8 13353 13679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25509257..25509485 /note="source:CACAO_M_E84368_F4_scaffold_10 12188 12425" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25509484..25509567) /note="source:CACAO_M_S_E174_F300_scaffold_1 492 577" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25509551..25509901 /note="source:CACAO_M_E84368_F4_scaffold_10 12858 13208" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(25510333..25511507) /locus_tag="TCM_014979" /note="dbxref CacaoGD:Thecc1EG014979" mRNA complement(join(25510333..25511257,25511376..25511507)) /locus_tag="TCM_014979" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046704t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14410.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12236t00001" CDS complement(join(25510664..25511257,25511376..25511432)) /locus_tag="TCM_014979" /note="paralog of Thecc1EG046704t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22950.1" /db_xref="Phytozome:POPTR_0012s14410.1" /db_xref="TAIR:AT5G62280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVA8" /translation="MAFWSAENATKAYLKTLKMGQKAKEPNVAEFVSALAAGNNAQLM VVAYATAANSTAFALVAAASQTGGHVVCIVPGIEELQLSKKILGYDASHVEFVVGEAQ NLLLSHYREADFVLIDCNLENHEGILRAVEAGTKRNGAVVVGYNAFSKGSWRSSGSRT QLLPIGEGLLVTRIAAKAKIDCGFEKRSHWVVKVDKCTGEEHVFRVRFSQGKGIQA" mobile_element complement(25514782..25515771) /note="source:CACAO_on_E683_scaffold_9 1323 2300" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25516065..25516505 /note="source:INTACT639F_F363_scaffold_5-int 8171 8576" /mobile_element_type="retrotransposon:LTR/Copia" gene 25519473..25522246 /locus_tag="TCM_014980" /note="dbxref CacaoGD:Thecc1EG014980" mRNA join(25519473..25520039,25520378..25520498, 25520590..25520681,25521183..25521279,25521587..25522246) /locus_tag="TCM_014980" /product="SPFH/Band 7/PHB domain-containing membrane-associated protein family" /inference="alignment:exonerate- protein:2:ricco:30147.m014184" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013826t1" /inference="similar to AA sequence:TAIR:AT5G51570.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9069t1" CDS join(25519845..25520039,25520378..25520498, 25520590..25520681,25521183..25521279,25521587..25521957) /locus_tag="TCM_014980" /note="paralog of Thecc1EG013826t1" /codon_start=1 /product="SPFH/Band 7/PHB domain-containing membrane-associated protein family" /protein_id="EOY22951.1" /db_xref="TAIR:AT5G51570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHM7" /translation="MGNTSCVFCTCIEQASIGVVERWGRFEKLADPGLHFFNPFAGQW LAGILSTRISSLDVRIETKTKDNVFVQLLCSIQYRVVKVHADDAFYELQNPKEQIQAY VFDVVRALVPRMNLDDLFEQKGEVAKAVLEELEKVMGEYGYSIEHILLVDIIPDAAVR KAMNEINAAQRLQLASVYKGEAEKVFQVKKAEAEAESKYLGGVGVARQRQAITDGLRE NILNFSHKVEGTSAKEVMDLIMITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGEQI RNGLMEAASAHVNIE" gene complement(25522366..25531841) /locus_tag="TCM_014981" /note="dbxref CacaoGD:Thecc1EG014981" mRNA complement(join(25522366..25522690,25522847..25522902, 25523635..25523684,25523774..25523877,25524100..25524296, 25524416..25524800,25524873..25525088,25525595..25525834, 25526014..25526103,25526220..25526531,25527645..25528040, 25530335..25530499,25530843..25530964,25531326..25531841)) /locus_tag="TCM_014981" /product="RNA-binding (RRM/RBD/RNP motifs) family protein" /inference="similar to AA sequence:Phytozome:GSVIVT01018314001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1338t6" CDS complement(join(25522634..25522690,25522847..25522902, 25523635..25523684,25523774..25523877,25524100..25524296, 25524416..25524800,25524873..25525088,25525595..25525834, 25526014..25526103,25526220..25526531,25527645..25528040, 25530335..25530499,25530843..25530911)) /locus_tag="TCM_014981" /codon_start=1 /product="RNA-binding (RRM/RBD/RNP motifs) family protein" /protein_id="EOY22952.1" /db_xref="Phytozome:GSVIVT01018314001" /db_xref="TAIR:AT2G44710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MV49" /translation="MHCRYHMWVYAMIIVTVPVIGEKSQLKSAHRSRVNVDFPPFHLS LLFEFGGGTDRGLSARPSNADRSPTRKEAFLTRMNNVLKVAEAGNEKEKDTDREIDCF REEFEEVDNVVSAVMGMDAIVQQSKIKNGGHLVENKSNFSENICKFETNAGNVLEDSE KSDDFYVSLKCSIIEETMEEGRVRGKNLNPSIEVYGVDSENEIENGEEAKESRDDQEQ NKDIEVSEANGVPPVFNQDLRTEWKKEKKLELHVGGLHKNAVEQDLFDVFGKFGEVQI ARIVRHPITSKSQGFAFIQYATVEQAKKVLFDLKDGIEVRGKHAKISPSHDRDTLYLG NICKTWTKEDVLEKLKGCGIEDVDEIQVPNDPKNERKIKGFAFLRFNTCCDAKAAFHR LRKPDALFGNARCAKVAFAHTPVHPREEVRLQVKTIYIERIPKSWDVQRLKTICEQYG ETKKVKISRNFGNKGKDFGFISFSTHESAVACLKGVNNVQFGGGIKVKAYIARPLVGR HLQKSTCGRMKPYKRCRSTGGWKIKGHAKSEGAEKKSDMNAKTVIYKSKTKGTEEKAA AVVHKNNQDPSNSKHTIEGETNEQESIPPQAHAAGLYAKPKKTDDKRKNRKRQRDPMY SSSHGRPSHSSGSSKSRSYLRKGPNRSGNSVAYGIPFKEAYVAPRSGYPSYAYGAISE SKRLSSDLYFKHALGKDALPHAGFLEPAFGKQSFDIDDYPARRTGEYNSPGNQGPAYR AGLAFSRSYVPNSFSYAGYEASGSGRVSGAYPPMQTRY" mobile_element complement(25523403..25523461) /note="source:CACAO_M_E24018_F98_scaffold_4 2021 2076" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25529807..25536601) /locus_tag="TCM_014982" /note="dbxref CacaoGD:Thecc1EG014982" mRNA complement(join(25529807..25530129,25530335..25530585, 25530843..25530964,25531326..25531549,25533805..25536551)) /locus_tag="TCM_014982" /product="F5O11.10, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016085t3" /inference="similar to AA sequence:ricco:30147.m014182" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6437t1" mRNA complement(join(25531652..25531921,25534039..25536601)) /locus_tag="TCM_014982" /product="F5O11.10, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016085t3" /inference="similar to AA sequence:ricco:30147.m014182" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc108t1; alternateUTRof:Thecc1EG014982t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6437t1" CDS complement(25534041..25536386) /locus_tag="TCM_014982" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014182; paralog of Thecc1EG016085t3" /codon_start=1 /product="F5O11.10, putative isoform 1" /protein_id="EOY22953.1" /db_xref="TAIR:AT1G12380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNA8" /translation="MASANSLPPTDPSSSTEDPAAKAVNKRYEGLITVRTKATKGKGA WYWAHLEPILVRNPDTNLPKAVKLKCSLCDAVFSASNPSRTASEHLKRGTCPNFSSVL RPNSSLSPLPISSLASPSASYHHHNHRKRSPSVAIVSPLQNQVSNNSNDDNNNALAIV ESTRLLGFSSHNNNNNAGLTQQHLVLSGGKEDLDALAMLEDSVKRLKSPKTSPGPALS KDQIDSAFDLLADWFYESCGSVSFSSFEHPKFRAFLSQVGMPAVSRRDLSGARLDNKF HEAKRESEARIRDAMFFQVASDGWKRKNCCCCSSSYTSSSTSSCCVEENLVKFSVNLP NGSSVYQKAVFTGGSVTSKYAEEVLWEAVMGISGSGVQKCVGIVADKYKAKALRNLEI QNHWMVNLSCQLQGFVSLIKDFSKELLLFRTVTENSLKLANFVNNKSQVRASFQKYRM QELECAGLIRVPSNKCDCSSNIAHVFAMLEDILNCSRVLQMVVLDDFYKVICVEDPVA QEVAGIVQNEGFWNDLEAVYSLVKLIRGMAQEIEVERPLIGQCLPLWEELRLKVKEWC TKFNLAEAPVEKIVEKRFRKNYHPAWSAAFILDPLYLTRETSGKYLPPFKCLTHEQEK DVDKLITRLVTREEGHVALMELMKWRSEGLDPLYAQAVQVKQRDPVTGKMKIANPQSS RLVWETCLSEYKSLGKVAVRLIFLHATSCGFKCNWSLMKWICVHRHSRIGLERAQKMI FIAAHSKLGRRDFSNEEEKDAELFMISSEDDMLNEVFADAP" CDS complement(25534041..25536386) /locus_tag="TCM_014982" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014182; paralog of Thecc1EG016085t3" /codon_start=1 /product="F5O11.10, putative isoform 1" /protein_id="EOY22954.1" /db_xref="TAIR:AT1G12380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNA8" /translation="MASANSLPPTDPSSSTEDPAAKAVNKRYEGLITVRTKATKGKGA WYWAHLEPILVRNPDTNLPKAVKLKCSLCDAVFSASNPSRTASEHLKRGTCPNFSSVL RPNSSLSPLPISSLASPSASYHHHNHRKRSPSVAIVSPLQNQVSNNSNDDNNNALAIV ESTRLLGFSSHNNNNNAGLTQQHLVLSGGKEDLDALAMLEDSVKRLKSPKTSPGPALS KDQIDSAFDLLADWFYESCGSVSFSSFEHPKFRAFLSQVGMPAVSRRDLSGARLDNKF HEAKRESEARIRDAMFFQVASDGWKRKNCCCCSSSYTSSSTSSCCVEENLVKFSVNLP NGSSVYQKAVFTGGSVTSKYAEEVLWEAVMGISGSGVQKCVGIVADKYKAKALRNLEI QNHWMVNLSCQLQGFVSLIKDFSKELLLFRTVTENSLKLANFVNNKSQVRASFQKYRM QELECAGLIRVPSNKCDCSSNIAHVFAMLEDILNCSRVLQMVVLDDFYKVICVEDPVA QEVAGIVQNEGFWNDLEAVYSLVKLIRGMAQEIEVERPLIGQCLPLWEELRLKVKEWC TKFNLAEAPVEKIVEKRFRKNYHPAWSAAFILDPLYLTRETSGKYLPPFKCLTHEQEK DVDKLITRLVTREEGHVALMELMKWRSEGLDPLYAQAVQVKQRDPVTGKMKIANPQSS RLVWETCLSEYKSLGKVAVRLIFLHATSCGFKCNWSLMKWICVHRHSRIGLERAQKMI FIAAHSKLGRRDFSNEEEKDAELFMISSEDDMLNEVFADAP" mobile_element 25541840..25542285 /note="source:CACAO_on_E77_A_scaffold_9 1 439" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25542335..25542635 /note="source:CACAO_on_E175_scaffold_1 439 747" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(25542705..25543150) /note="source:CACAO_on_S_E390_scaffold_9 2391 2850" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25543324..25543546) /note="source:CACAO_on_E460_scaffold_3 281 511" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 25544008..25549279 /locus_tag="TCM_014983" /note="dbxref CacaoGD:Thecc1EG014983" mRNA join(25544008..25544304,25544606..25544679, 25545056..25545294,25545453..25545598,25546509..25546854, 25546992..25547147,25547608..25547881,25548200..25548287, 25548391..25548432,25548565..25548613,25548741..25549279) /locus_tag="TCM_014983" /product="FK506-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14390.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14390.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05055t00001" mRNA join(25544211..25544304,25544606..25544679, 25545056..25545294,25545453..25545598,25546509..25546854, 25546992..25547147,25547608..25548037,25548200..25548223) /locus_tag="TCM_014983" /product="Fk506 binding protein 53, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14390.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14390.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc190t10; inference alignment:Newbler:10:TSA:cgbaB_g05055t00001" CDS join(25544292..25544304,25544606..25544679, 25545056..25545294,25545453..25545598,25546509..25546854, 25546992..25547147,25547608..25547881,25548200..25548287, 25548391..25548432,25548565..25548613,25548741..25548822) /locus_tag="TCM_014983" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="FK506-binding protein, putative isoform 1" /protein_id="EOY22955.1" /db_xref="Phytozome:POPTR_0015s14390.1" /db_xref="TAIR:AT4G25340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9N7" /translation="MGFWGIEVKPGKPHPYHSDNVRGKLHITQATLGLGSSTERAVLQ CSVGHKSPIILCSLLPNQNETCSLDLKFDEDDDLVAFSVIGPRSIHLSGYFVAADGDH LRDEYESDSYGEDIAETESEDESSDYDSDDAYEHDFIDDDDDLEFFPPSPVPNSGVVI EEIVDEQKPTNGNVESKRLKKKNKSMDSEARSNSQQQLVVKGGAGVKVLESEDEDGFP VSASHKSEDAIQEPQPETEKQREKITAEEDKKPTKDGSEKKRKVKSTDEDGQQERKKR KKKKKQQKEKGTDNINGLLDEVQPLKVESQDPEQVLPIGNKHDQPSNDMALDSDADNV PGENLAEKKKKKKKKKKSAQENQVDANAAVSQSGDKDTSTLKSEEKQTAGKCSQVRTF PNGLVIEELAMGKPDGKRASRGKQVSVHYIGKLKKNGKIFDSNVGRAPFKFRLGIGEV IKGWDVGVEGMRIGDKRKLIIPPSMGYGSKGAGSRIPPNSWLEFDVELVGVR" CDS join(25544292..25544304,25544606..25544679, 25545056..25545294,25545453..25545598,25546509..25546854, 25546992..25547147,25547608..25547971) /locus_tag="TCM_014983" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Fk506 binding protein 53, putative isoform 2" /protein_id="EOY22956.1" /db_xref="Phytozome:POPTR_0015s14390.1" /db_xref="TAIR:AT4G25340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9N7" /translation="MGFWGIEVKPGKPHPYHSDNVRGKLHITQATLGLGSSTERAVLQ CSVGHKSPIILCSLLPNQNETCSLDLKFDEDDDLVAFSVIGPRSIHLSGYFVAADGDH LRDEYESDSYGEDIAETESEDESSDYDSDDAYEHDFIDDDDDLEFFPPSPVPNSGVVI EEIVDEQKPTNGNVESKRLKKKNKSMDSEARSNSQQQLVVKGGAGVKVLESEDEDGFP VSASHKSEDAIQEPQPETEKQREKITAEEDKKPTKDGSEKKRKVKSTDEDGQQERKKR KKKKKQQKEKGTDNINGLLDEVQPLKVESQDPEQVLPIGNKHDQPSNDMALDSDADNV PGENLAEKKKKKKKKKKSAQENQVDANAAVSQSGDKDTSTLKSEEKQTAGKCSQVRTF PNGLVIEELAMGKPDGKRASRGKQVIPSALSFQLVNFPLLTKNTSVLYFSLQS" gene 25549571..25553553 /locus_tag="TCM_014984" /note="dbxref CacaoGD:Thecc1EG014984" mRNA join(25549571..25549964,25550170..25550233, 25550394..25550458,25550664..25550711,25550813..25550899, 25550986..25551066,25551160..25551261,25551342..25551422, 25551521..25551595,25551820..25551882,25551997..25552077, 25552175..25552369,25552458..25552508,25552645..25552733, 25552901..25552952,25553079..25553135,25553259..25553553) /locus_tag="TCM_014984" /product="Enolase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022427t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018517001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9190t1" mRNA join(25549690..25549964,25550170..25550233, 25550394..25550458,25550664..25550711,25550813..25550899, 25550986..25551071,25551129..25551261,25551342..25551422, 25551521..25551595,25551820..25551882,25551997..25552077, 25552175..25552369,25552458..25552733) /locus_tag="TCM_014984" /product="Enolase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022427t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14380.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc18t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9190t1" mRNA join(25549690..25549964,25550170..25550233, 25550394..25550458,25550664..25550711,25550813..25550899, 25550986..25551071,25551129..25551261,25551342..25551422, 25551521..25551595,25551820..25551882,25551997..25552077, 25552175..25552369,25552458..25552508,25552645..>25552733) /locus_tag="TCM_014984" /product="Enolase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022427t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14380.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc18t9; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9190t1" CDS join(25549899..25549964,25550170..25550233, 25550394..25550458,25550664..25550711,25550813..25550899, 25550986..25551066,25551160..25551261,25551342..25551422, 25551521..25551595,25551820..25551882,25551997..25552077, 25552175..25552369,25552458..25552508,25552645..25552733, 25552901..25552952,25553079..25553135,25553259..25553339) /locus_tag="TCM_014984" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022427t1" /codon_start=1 /product="Enolase isoform 1" /protein_id="EOY22957.1" /db_xref="Phytozome:GSVIVT01018517001" /db_xref="TAIR:AT2G36530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P09104" /translation="MVTIKSVKARQIFDSRGNPTVEADVTLSDGTVARAAVPSGASTG TYEALELRDGGSDYLGKGVLKAVENVNTIIGPALVGKDPKEQGKIDNFMVQQLDGTVN EWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVING GSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHHLKSVIKKKYGQDATNVGDEGGF APNIQENKEGLELLKTAIAKAGYTGKVVIGMDVAASEFYDNKDKTYDLNFKEENNDGS QKISGDSLKNVYKSFVTDYPIVSIEDPFDQDDWEHYAKLTCEIGEQVQIVGDDLLVTN PKRVEKAIKEKACNALLLKVNQIGSVTESIEAVKMSKLAGWGVMASHRSGETEDTFIA DLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAAAVYAGAKFRAPVEPY" CDS join(25549899..25549964,25550170..25550233, 25550394..25550458,25550664..25550711,25550813..25550899, 25550986..25551071,25551129..25551261,25551342..25551422, 25551521..25551595,25551820..25551882,25551997..25552077, 25552175..25552369,25552458..25552508,25552645..>25552731) /locus_tag="TCM_014984" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022427t1" /codon_start=1 /product="Enolase isoform 2" /protein_id="EOY22958.1" /db_xref="Phytozome:POPTR_0015s14380.1" /db_xref="TAIR:AT2G36530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P09104" /translation="MVTIKSVKARQIFDSRGNPTVEADVTLSDGTVARAAVPSGASTG TYEALELRDGGSDYLGKGVLKAVENVNTIIGPALVGKDPKEQGKIDNFMVQQLDGTVN EWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQVIFTLFVSSNLQHIANLAGNKTL VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHHLKSVIKKKYG QDATNVGDEGGFAPNIQENKEGLELLKTAIAKAGYTGKVVIGMDVAASEFYDNKDKTY DLNFKEENNDGSQKISGDSLKNVYKSFVTDYPIVSIEDPFDQDDWEHYAKLTCEIGEQ VQIVGDDLLVTNPKRVEKAIKEKACNALLLKVNQIGSVTESIEAVKMSKLAGWGVMAS HR" CDS join(25549899..25549964,25550170..25550233, 25550394..25550458,25550664..25550711,25550813..25550899, 25550986..25551071,25551129..25551261,25551342..25551422, 25551521..25551595,25551820..25551882,25551997..25552077, 25552175..25552369,25552458..25552670) /locus_tag="TCM_014984" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG022427t1" /codon_start=1 /product="Enolase isoform 3" /protein_id="EOY22959.1" /db_xref="Phytozome:POPTR_0015s14380.1" /db_xref="TAIR:AT2G36530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P09104" /translation="MVTIKSVKARQIFDSRGNPTVEADVTLSDGTVARAAVPSGASTG TYEALELRDGGSDYLGKGVLKAVENVNTIIGPALVGKDPKEQGKIDNFMVQQLDGTVN EWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQVIFTLFVSSNLQHIANLAGNKTL VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHHLKSVIKKKYG QDATNVGDEGGFAPNIQENKEGLELLKTAIAKAGYTGKVVIGMDVAASEFYDNKDKTY DLNFKEENNDGSQKISGDSLKNVYKSFVTDYPIVSIEDPFDQDDWEHYAKLTCEIGEQ VQIVGDDLLVTNPKRVEKAIKEKACNALLLKVAFDHFFSSSSNLVHDVELAVYLFVAI GLLRLINSSTVFTVCYLSGESNRFCN" mobile_element 25554178..25554287 /note="source:scaffold_8_CACTA_0858 14195 14297" /mobile_element_type="transposon:TIR/CACTA" gene 25554982..25556638 /locus_tag="TCM_014985" /note="dbxref CacaoGD:Thecc1EG014985" mRNA join(25554982..25555086,25555648..25556638) /locus_tag="TCM_014985" /product="RRNA processing protein-related" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g37750.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14370.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04714t00001" CDS 25555658..25556548 /locus_tag="TCM_014985" /codon_start=1 /product="RRNA processing protein-related" /protein_id="EOY22960.1" /db_xref="Phytozome:POPTR_0015s14370.1" /db_xref="TAIR:AT3G22660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICW5" /translation="MGLPSKKSTLLTENSEEDDNVMDDLREEESESGSESEEEDVKLA EPSKNSIYNRDGLIEKLQDISWPENVDWMHKLSFDIDQEKEVDVNDDLARELAFYTQA LEGTRLAFEKFQSMGLPFLRPPDYYAEMVKTDAHMHKVKGRLLAQKRQIEEAEERRKA REAKRIAKEVQAEKLKERAKQKKQEIESVKKWRKHRQQSGFPAGGKDSELDLGFEDGK AFERSGKKRPGVFPGDRSGGKAKQGGGKGKNGKNREFRNSKFGFGGRKGLKKQNTAET TNDLRGFSKGSVAGNKKRRR" gene 25557617..25558354 /locus_tag="TCM_014986" /note="dbxref CacaoGD:Thecc1EG014986" mRNA 25557617..25558354 /locus_tag="TCM_014986" /product="Translation initiation factor IF-2, putative" /inference="alignment:exonerate-protein:2:frave:gene13417" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012288t1" /inference="similar to AA sequence:frave:gene13417" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3857t1" CDS 25557701..25558117 /locus_tag="TCM_014986" /note="dbxref frave:gene13417; paralog of Thecc1EG012288t1" /codon_start=1 /product="Translation initiation factor IF-2, putative" /protein_id="EOY22961.1" /translation="MLDSTLDLISQAVSNNLYVFCLFNLIIVMILMGSKHGSSFDQDY EIPLSTPAYHKQDAEVKQSPDLSERAMNDGSVPGAYETATEDNKGNKNDINGNNIIVT DEDDEGDDELRRRVEEFIAKVNREWKAEKLGMSISA" gene complement(25559044..25563365) /locus_tag="TCM_014987" /note="dbxref CacaoGD:Thecc1EG014987" mRNA complement(join(25559044..25559754,25560071..25560232, 25560723..25560854,25561555..25561622,25561788..25561841, 25561918..25561956,25562034..25562100,25562426..25562520, 25562925..25563365)) /locus_tag="TCM_014987" /product="AT hook motif DNA-binding family protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014177" /inference="similar to AA sequence:Phytozome:POPTR_0012s14350.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6465t4" CDS complement(join(25559458..25559754,25560071..25560232, 25560723..25560854,25561555..25561622,25561788..25561841, 25561918..25561956,25562034..25562100,25562426..25562520, 25562925..25563291)) /locus_tag="TCM_014987" /codon_start=1 /product="AT hook motif DNA-binding family protein" /protein_id="EOY22962.1" /db_xref="Phytozome:POPTR_0012s14350.1" /translation="MEDKEGPSPGVTVKGDEAPEGYHVAPRTENPTPYAGPTMQATAA PPARVAAPPGPSTGSEMKKKRGRPRKYRPDGSLAMTLSPMPISSSIPLGGEFSPWKRG RGRPVDAVKKSHKYEFESSPEYCTCLWTGKMVRYQNISQGASATLFCALVGKVLRCSS CYTPNSFASQSLDETGKRLFSSFPSPYPSINLDVNDTEFFLIPSLDLGDGIAYFVGAN FTPHVITVNAGEDVTMKVMSFSQQGARAICILSANGTISNVTLRQPTSSGGTLTYEGR FEILSLSGSFMPTENAGTKSRSGGMSVSLAGPDGRVLGGGLAGLLVAAGPVQVVVGSF LPGHQQEQKHKKQRTEPAAAVVSPTAVHTMSTEEIKVSYGGVRPILTSPFPGDNLGTL NPIQAFRNSAIDNKSSSAGEESKGHSLSQCEVSS" gene complement(25564082..25569682) /locus_tag="TCM_014988" /note="dbxref CacaoGD:Thecc1EG014988" mRNA complement(join(25564082..25565085,25565176..25565261, 25565531..25565810,25565976..25566050,25566142..25566215, 25566407..25566494,25566579..25566730,25566831..25566990, 25567114..25567269,25567363..25567572,25567666..25567917, 25568006..25568212,25568350..25568433,25569408..25569656)) /locus_tag="TCM_014988" /product="Microtubule associated protein family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30225.m001728" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005502t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14350.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc39t9" mRNA complement(join(25564347..25565261,25565531..25565810, 25565970..25566050,25566142..25566215,25566407..25566494, 25566579..25566730,25566831..25566990,25567114..25567269, 25567363..25567572,25567666..25567917,25568006..25568212, 25568350..25568433,25569408..25569682)) /locus_tag="TCM_014988" /product="Microtubule associated protein family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30225.m001728" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005502t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14350.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc39t6; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc39t9; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc64t4" mRNA complement(join(25564347..25565205,25565975..25566050, 25566142..25566215,25566407..25566494,25566579..25566730, 25566831..25566990,25567114..25567269,25567363..25567572, 25567666..25567917,25568006..25568212,25568350..25568433, 25568786..25568842,25569408..25569434)) /locus_tag="TCM_014988" /product="Microtubule associated protein (MAP65/ASE1) family protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:30225.m001728" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005502t1" /inference="similar to AA sequence:Phytozome:Glyma10g32160.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc64t5; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc64t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc39t9" CDS complement(join(25564804..25565085,25565176..25565261, 25565531..25565810,25565976..25566050,25566142..25566215, 25566407..25566494,25566579..25566730,25566831..25566990, 25567114..25567269,25567363..25567572,25567666..25567917, 25568006..25568212,25568350..25568421)) /locus_tag="TCM_014988" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005502t1" /codon_start=1 /product="Microtubule associated protein family protein isoform 1" /protein_id="EOY22963.1" /db_xref="Phytozome:POPTR_0015s14350.1" /db_xref="TAIR:AT5G51600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHM4" /translation="MSTPKNDPLLQVETTCGTLLYELQIIWDEVGETDSDRDKMLLEL EQECLEVYRRKVDQANRCRAQLRQTIADSEAELAAICSAMGERPVHIRQSDQNSGSLK EELRKILPQLEEMRKRKVERRNQFIEVLEQTQKITNEIYGSTESVSLKTVVDETDLSL RKLEELHRQLHELQKEKSDRLKQVQDHLHMLNSLCSVMGMDFKLTVSEVHPSLGDSDG LRSISNNTIEKLAIAIKKLREVKIQRMQRLQDLATTMLELWNLMDTPIEEQQMFQNVT CNIAASEHEITEPNTLSVDFINYVEAEVSRLEELKSSKMKELVLKKRSELEDICRKTH LVPDSDSAIEDAIEAIESGAVDAATILEQIELQIAKVKEEAFSRKEILEKVEKWLTAC DEECWLEEYNRDENRYNAGKGAHLTLKRAEKARSLVNKLPGMVEALASKTLAWEKERE IKFMYDGIRLLSMLEEYTILRQEKEQERRRLRDQKKLQGQLIAEQEALYGSKPSPSKP QSVKKGSRFSTGGASNRRVSLGGAMLPNHKPDSLHSAKATPQTRPSKKTERIFQNDLQ DDALPAYSAVRRGLDIADIPVRKHSSSAVNANELESPLKTIPTKDLSYTTPLKTTSLV DEENTTPKAMPIPVPSTPSTASIPMQTAMTPAPPIPFITKPAEEMPEEIEQSFEERRL AFLLSKTQITSLIQV" CDS complement(join(25564804..25565261,25565531..25565810, 25565970..25566050,25566142..25566215,25566407..25566494, 25566579..25566730,25566831..25566990,25567114..25567269, 25567363..25567572,25567666..25567917,25568006..25568212, 25568350..25568421)) /locus_tag="TCM_014988" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG005502t1" /codon_start=1 /product="Microtubule associated protein family protein isoform 4" /protein_id="EOY22966.1" /db_xref="Phytozome:POPTR_0015s14350.1" /db_xref="TAIR:AT5G51600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHM4" /translation="MSTPKNDPLLQVETTCGTLLYELQIIWDEVGETDSDRDKMLLEL EQECLEVYRRKVDQANRCRAQLRQTIADSEAELAAICSAMGERPVHIRQSDQNSGSLK EELRKILPQLEEMRKRKVERRNQFIEVLEQTQKITNEIYGSTESVSLKTVVDETDLSL RKLEELHRQLHELQKEKSDRLKQVQDHLHMLNSLCSVMGMDFKLTVSEVHPSLGDSDG LRSISNNTIEKLAIAIKKLREVKIQRMQRLQDLATTMLELWNLMDTPIEEQQMFQNVT CNIAASEHEITEPNTLSVDFINYVEAEVSRLEELKSSKMKELVLKKRSELEDICRKTH LVPDSDSAIEDAIEAIESGAVDAATILEQIELQIAKVKEEAFSRKEILEKVEKWLTAC DEECWLEEYNRDENRYNAGKGAHLTLKRAEKARSLVNKLPGMVEALASKTLAWEKERE IKFMYDGIRLLSMLEEYTILRQEKEQERRRLRVWDQKKLQGQLIAEQEALYGSKPSPS KPQSVKKGSRFSTGGASNRRVSLGGAMLPNHKPDSLHSAKATPQTRPSKKTERIFQND LQDDALPAYSAVRRGLDIADIPVRKHSSSAVNANELESPLVRKPFSPISSTVSSKANM TNMLEDNGDTLQKTIPTKDLSYTTPLKTTSLVDEENTTPKAMPIPVPSTPSTASIPMQ TAMTPAPPIPFITKPAEEMPEEIEQSFEERRLAFLLSKTQITSLIQV" mRNA complement(join(<25565058..25565085,25565176..25565261, 25565531..25565810,25565976..25566050,25566142..25566215, 25566407..25566494,25566579..25566730,25566831..25566990, 25567114..25567269,25567363..25567572,25567666..25567917, 25568006..25568212,25568350..25568433,25568786..25568842, 25569408..>25569434)) /locus_tag="TCM_014988" /product="Microtubule associated protein family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30225.m001728" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005502t1" /inference="similar to AA sequence:ricco:30225.m001728" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc64t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc64t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc39t9" mRNA complement(join(<25565058..25565085,25565176..25565261, 25565531..25565810,25565970..25566050,25566142..25566215, 25566407..25566494,25566579..25566730,25566831..25566990, 25567114..25567269,25567363..25567572,25567666..25567917, 25568006..25568212,25568350..25568433,25568786..25568842, 25569408..>25569434)) /locus_tag="TCM_014988" /product="Microtubule associated protein family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30225.m001728" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005502t1" /inference="similar to AA sequence:ricco:30225.m001728" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc64t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc64t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc39t9" CDS complement(join(<25565059..25565085,25565176..25565261, 25565531..25565810,25565976..25566050,25566142..25566215, 25566407..25566494,25566579..25566730,25566831..25566990, 25567114..25567269,25567363..25567572,25567666..25567917, 25568006..25568212,25568350..25568433,25568786..25568842, 25569408..>25569434)) /locus_tag="TCM_014988" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30225.m001728; paralog of Thecc1EG005502t1" /codon_start=1 /product="Microtubule associated protein family protein isoform 3" /protein_id="EOY22965.1" /db_xref="TAIR:AT5G51600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHM4" /translation="CSFQSLFVQNNHLIELGCCCLEISLNFKELFIMSTPKNDPLLQV ETTCGTLLYELQIIWDEVGETDSDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQTI ADSEAELAAICSAMGERPVHIRQSDQNSGSLKEELRKILPQLEEMRKRKVERRNQFIE VLEQTQKITNEIYGSTESVSLKTVVDETDLSLRKLEELHRQLHELQKEKSDRLKQVQD HLHMLNSLCSVMGMDFKLTVSEVHPSLGDSDGLRSISNNTIEKLAIAIKKLREVKIQR MQRLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEHEITEPNTLSVDFINYVEA EVSRLEELKSSKMKELVLKKRSELEDICRKTHLVPDSDSAIEDAIEAIESGAVDAATI LEQIELQIAKVKEEAFSRKEILEKVEKWLTACDEECWLEEYNRDENRYNAGKGAHLTL KRAEKARSLVNKLPGMVEALASKTLAWEKEREIKFMYDGIRLLSMLEEYTILRQEKEQ ERRRLRDQKKLQGQLIAEQEALYGSKPSPSKPQSVKKGSRFSTGGASNRRVSLGGAML PNHKPDSLHSAKATPQTRPSKKTERIFQNDLQDDALPAYSAVRRGLDIADIPVRKHSS SAVNANELESPLKTIPTKDLS" CDS complement(join(<25565059..25565085,25565176..25565261, 25565531..25565810,25565970..25566050,25566142..25566215, 25566407..25566494,25566579..25566730,25566831..25566990, 25567114..25567269,25567363..25567572,25567666..25567917, 25568006..25568212,25568350..25568433,25568786..25568842, 25569408..>25569434)) /locus_tag="TCM_014988" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30225.m001728; paralog of Thecc1EG005502t1" /codon_start=1 /product="Microtubule associated protein family protein isoform 2" /protein_id="EOY22964.1" /db_xref="TAIR:AT5G51600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHM4" /translation="CSFQSLFVQNNHLIELGCCCLEISLNFKELFIMSTPKNDPLLQV ETTCGTLLYELQIIWDEVGETDSDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQTI ADSEAELAAICSAMGERPVHIRQSDQNSGSLKEELRKILPQLEEMRKRKVERRNQFIE VLEQTQKITNEIYGSTESVSLKTVVDETDLSLRKLEELHRQLHELQKEKSDRLKQVQD HLHMLNSLCSVMGMDFKLTVSEVHPSLGDSDGLRSISNNTIEKLAIAIKKLREVKIQR MQRLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEHEITEPNTLSVDFINYVEA EVSRLEELKSSKMKELVLKKRSELEDICRKTHLVPDSDSAIEDAIEAIESGAVDAATI LEQIELQIAKVKEEAFSRKEILEKVEKWLTACDEECWLEEYNRDENRYNAGKGAHLTL KRAEKARSLVNKLPGMVEALASKTLAWEKEREIKFMYDGIRLLSMLEEYTILRQEKEQ ERRRLRVWDQKKLQGQLIAEQEALYGSKPSPSKPQSVKKGSRFSTGGASNRRVSLGGA MLPNHKPDSLHSAKATPQTRPSKKTERIFQNDLQDDALPAYSAVRRGLDIADIPVRKH SSSAVNANELESPLKTIPTKDLS" CDS complement(join(25565195..25565205,25565975..25566050, 25566142..25566215,25566407..25566494,25566579..25566730, 25566831..25566990,25567114..25567269,25567363..25567572, 25567666..25567917,25568006..25568212,25568350..25568421)) /locus_tag="TCM_014988" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG005502t1" /codon_start=1 /product="Microtubule associated protein (MAP65/ASE1) family protein isoform 5" /protein_id="EOY22967.1" /db_xref="Phytozome:Glyma10g32160.1" /db_xref="TAIR:AT5G51600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHM4" /translation="MSTPKNDPLLQVETTCGTLLYELQIIWDEVGETDSDRDKMLLEL EQECLEVYRRKVDQANRCRAQLRQTIADSEAELAAICSAMGERPVHIRQSDQNSGSLK EELRKILPQLEEMRKRKVERRNQFIEVLEQTQKITNEIYGSTESVSLKTVVDETDLSL RKLEELHRQLHELQKEKSDRLKQVQDHLHMLNSLCSVMGMDFKLTVSEVHPSLGDSDG LRSISNNTIEKLAIAIKKLREVKIQRMQRLQDLATTMLELWNLMDTPIEEQQMFQNVT CNIAASEHEITEPNTLSVDFINYVEAEVSRLEELKSSKMKELVLKKRSELEDICRKTH LVPDSDSAIEDAIEAIESGAVDAATILEQIELQIAKVKEEAFSRKEILEKVEKWLTAC DEECWLEEYNRDENRYNAGKGAHLTLKRAEKARSLVNKLPGMVEALASKTLAWEKERE IKFMYDGIRLLSMLEEYTILRQEKEQERRRLRGKR" mRNA complement(join(25565238..25565531,25565679..25565810, 25565976..25566050,25566142..25566215,25566407..25566494, 25566579..25566730,25566831..25566990,25567114..25567269, 25567363..25567572,25567666..25567917,25568006..25568212, 25568350..25568433,25569408..25569682)) /locus_tag="TCM_014988" /product="Microtubule associated protein (MAP65/ASE1) family protein isoform 6" /inference="alignment:exonerate- protein:2:ricco:30225.m001728" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005502t1" /inference="similar to AA sequence:Phytozome:Glyma10g32160.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc67t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc64t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc39t9" CDS complement(join(25565436..25565531,25565679..25565810, 25565976..25566050,25566142..25566215,25566407..25566494, 25566579..25566730,25566831..25566990,25567114..25567269, 25567363..25567572,25567666..25567917,25568006..25568212, 25568350..25568421)) /locus_tag="TCM_014988" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG005502t1" /codon_start=1 /product="Microtubule associated protein (MAP65/ASE1) family protein isoform 6" /protein_id="EOY22968.1" /db_xref="Phytozome:Glyma10g32160.1" /db_xref="TAIR:AT5G51600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHM4" /translation="MSTPKNDPLLQVETTCGTLLYELQIIWDEVGETDSDRDKMLLEL EQECLEVYRRKVDQANRCRAQLRQTIADSEAELAAICSAMGERPVHIRQSDQNSGSLK EELRKILPQLEEMRKRKVERRNQFIEVLEQTQKITNEIYGSTESVSLKTVVDETDLSL RKLEELHRQLHELQKEKSDRLKQVQDHLHMLNSLCSVMGMDFKLTVSEVHPSLGDSDG LRSISNNTIEKLAIAIKKLREVKIQRMQRLQDLATTMLELWNLMDTPIEEQQMFQNVT CNIAASEHEITEPNTLSVDFINYVEAEVSRLEELKSSKMKELVLKKRSELEDICRKTH LVPDSDSAIEDAIEAIESGAVDAATILEQIELQIAKVKEEAFSRKEILEKVEKWLTAC DEECWLEEYNRDENRYNAGKGAHLTLKRAEKARSLVNKLPGMVEALASKTLAWEKERE IKFMYDGIRLLSMLEEYTILRQEKEQERRRLRDQKKLQGQLIAEQEALYGSKPSPSKP QSVKKGSRFSTGGASNRRGKFSVSACYNQEHLNCFIKKITINNCLCKAS" mobile_element complement(25570383..25570814) /note="source:CACAO_M_E4753_F17_scaffold_2 7349 7818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25570590..25571296 /note="source:scaffold_2_CACTA_0244 12759 13472" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25571210..25571252) /note="source:CACAO_Mutator_E1888_scaffold_9 5904 6047" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25571253..25571353) /note="source:INTACT135F_F90_scaffold_2-int 12973 13071" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(25571460..25575483) /locus_tag="TCM_014989" /note="dbxref CacaoGD:Thecc1EG014989" mRNA complement(join(25571460..25572630,25573008..25573282, 25573928..25574818,25575147..25575483)) /locus_tag="TCM_014989" /product="Trichome birefringence-like 18 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014176" /inference="similar to AA sequence:Phytozome:POPTR_0015s14330.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc849t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc849t3" mRNA complement(join(25571460..25572630,25573008..25573282, 25573928..25574843,25575147..25575483)) /locus_tag="TCM_014989" /product="Trichome birefringence-like 18 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014176" /inference="similar to AA sequence:Phytozome:POPTR_0015s14330.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc836t2; alternateUTRof:Thecc1EG014989t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc849t3" mRNA complement(join(25571538..25572630,25573008..25573282, 25573928..25574813,25575147..25575332)) /locus_tag="TCM_014989" /product="Trichome birefringence-like 18 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014176" /inference="similar to AA sequence:Phytozome:POPTR_0015s14330.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6467t1; alternateUTRof:Thecc1EG014989t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc849t3" CDS complement(join(25571815..25572630,25573008..25573282, 25573928..25574471)) /locus_tag="TCM_014989" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Trichome birefringence-like 18 isoform 1" /protein_id="EOY22969.1" /db_xref="Phytozome:POPTR_0015s14330.1" /db_xref="TAIR:AT4G25360.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYS5" /translation="MSLASPKGSPKMAAFPRSLSSIAASLAVLAMFLIFASWLLVSYP IGSTVRGYFYSVDRKIVLPASGFNQSAVNDVDFVDKNSSSGSNLKAPVLSSNSSFVVD NSGNARVSITSSVAKDSLPSESNVELPISSKDSLVDSKSKEMPEKPVELPEPSLRSAE NEVGTSSSASSKASDINSVDSGCDLYHGNWFYDPQGPLYTNNSCPVLTQMQNCQGNGR PDKEYENWRWKPSKCDLPRFDAKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEV PKNRGNRKMQRWHFRSTSVMIVRIWSSWLVHHSSEKFDFAPEGVSKLHLDAPDNSFME FIPNFDVIVISSGHWFAKQSVYILKNEIVGGQLWWPDRSRPMKINNIDAFGISVETSL SAILTHPNYTGLTILRSFSPDHYEGGAWNTGGSCTGKVKPLATGELVENGFTNIMHKK QVMGFKRAVKKATNKSKLRLMDITEVFGYRHDGHPGPYRNPDPHKITKRGPDGKPPPQ DCLHWCMPGPVDTWNELVLEIIRREFKGDQNFSSED" CDS complement(join(25571815..25572630,25573008..25573282, 25573928..25574471)) /locus_tag="TCM_014989" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Trichome birefringence-like 18 isoform 1" /protein_id="EOY22970.1" /db_xref="Phytozome:POPTR_0015s14330.1" /db_xref="TAIR:AT4G25360.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYS5" /translation="MSLASPKGSPKMAAFPRSLSSIAASLAVLAMFLIFASWLLVSYP IGSTVRGYFYSVDRKIVLPASGFNQSAVNDVDFVDKNSSSGSNLKAPVLSSNSSFVVD NSGNARVSITSSVAKDSLPSESNVELPISSKDSLVDSKSKEMPEKPVELPEPSLRSAE NEVGTSSSASSKASDINSVDSGCDLYHGNWFYDPQGPLYTNNSCPVLTQMQNCQGNGR PDKEYENWRWKPSKCDLPRFDAKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEV PKNRGNRKMQRWHFRSTSVMIVRIWSSWLVHHSSEKFDFAPEGVSKLHLDAPDNSFME FIPNFDVIVISSGHWFAKQSVYILKNEIVGGQLWWPDRSRPMKINNIDAFGISVETSL SAILTHPNYTGLTILRSFSPDHYEGGAWNTGGSCTGKVKPLATGELVENGFTNIMHKK QVMGFKRAVKKATNKSKLRLMDITEVFGYRHDGHPGPYRNPDPHKITKRGPDGKPPPQ DCLHWCMPGPVDTWNELVLEIIRREFKGDQNFSSED" CDS complement(join(25571815..25572630,25573008..25573282, 25573928..25574471)) /locus_tag="TCM_014989" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Trichome birefringence-like 18 isoform 1" /protein_id="EOY22971.1" /db_xref="Phytozome:POPTR_0015s14330.1" /db_xref="TAIR:AT4G25360.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYS5" /translation="MSLASPKGSPKMAAFPRSLSSIAASLAVLAMFLIFASWLLVSYP IGSTVRGYFYSVDRKIVLPASGFNQSAVNDVDFVDKNSSSGSNLKAPVLSSNSSFVVD NSGNARVSITSSVAKDSLPSESNVELPISSKDSLVDSKSKEMPEKPVELPEPSLRSAE NEVGTSSSASSKASDINSVDSGCDLYHGNWFYDPQGPLYTNNSCPVLTQMQNCQGNGR PDKEYENWRWKPSKCDLPRFDAKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEV PKNRGNRKMQRWHFRSTSVMIVRIWSSWLVHHSSEKFDFAPEGVSKLHLDAPDNSFME FIPNFDVIVISSGHWFAKQSVYILKNEIVGGQLWWPDRSRPMKINNIDAFGISVETSL SAILTHPNYTGLTILRSFSPDHYEGGAWNTGGSCTGKVKPLATGELVENGFTNIMHKK QVMGFKRAVKKATNKSKLRLMDITEVFGYRHDGHPGPYRNPDPHKITKRGPDGKPPPQ DCLHWCMPGPVDTWNELVLEIIRREFKGDQNFSSED" mobile_element 25577491..25577721 /note="source:scaffold_1_CACTA_0008 13986 14216" /mobile_element_type="transposon:TIR/CACTA" gene 25578702..25581858 /locus_tag="TCM_014991" /note="dbxref CacaoGD:Thecc1EG014991" mRNA join(25578702..25578956,25579063..25579098, 25579265..25579374,25580179..25580358,25581355..25581482, 25581568..25581858) /locus_tag="TCM_014991" /product="Double Clp-N motif protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014175" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016099t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018510001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05785t00001" CDS join(25578751..25578956,25579063..25579098, 25579265..25579374,25580179..25580358,25581355..25581482, 25581568..25581600) /locus_tag="TCM_014991" /note="paralog of Thecc1EG016099t1" /codon_start=1 /product="Double Clp-N motif protein" /protein_id="EOY22972.1" /db_xref="Phytozome:GSVIVT01018510001" /db_xref="TAIR:AT4G25370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B483" /translation="MATYRLSFLPISISASQSLPSKRHDFRLSLPLSSLYGNKLLLKT SDLSLFVTKHHSSTTATVSFSLPTAKPERAPSEKSPKWSARSIKSFAMAELEARKLKY PNTGTEALLMGILVEGTSQAAKFLRDNGITLFKVREETVNLLGKSDMYFFSPEHPPLT EQAQRALDWAVDEKLKSGESGEITTTYLLLGIWSEKESAGYKILATLGFNDEKAKELT KYINEDIVLNYK" mobile_element complement(25582416..25582986) /note="source:scaffold_1_CACTA_0009 13257 13828" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25582696..25592169 /note="source:CACAO_M_E33977_F20_scaffold_4 5405 15061" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25587361..25593996) /locus_tag="TCM_014994" /note="dbxref CacaoGD:Thecc1EG014994" mRNA complement(join(25587361..25588387,25588471..25588655, 25588745..25588990,25589047..25589219,25590233..25590304, 25590389..25590460,25590540..25590611,25590686..25590958, 25591048..25591194,25591311..25592039,25592877..25592955, 25593450..25593996)) /locus_tag="TCM_014994" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014217t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS complement(join(25587933..25588387,25588471..25588655, 25588745..25588990,25589047..25589219,25590233..25590304, 25590389..25590460,25590540..25590611,25590686..25590958, 25591048..25591194,25591311..25592039,25592877..25592955, 25593450..25593517)) /locus_tag="TCM_014994" /note="paralog of Thecc1EG014217t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22973.1" /translation="MEGICETLELRVGDTSWWECVTRTGVFEKALCKRNETTTPAKMS AMNEEIQHRQYEDLDSLLIVPREKWTFNVTINTHCKWSQLHYITKTLQQKGEYDPVKR TCFGMLLDVYPQGYFCVGLLHSIMICRITERQSMDHELWFAIGKSKARLSKQEFCLIT ELKFGPMLDVFRQPYEVAADGIHSRYWNGQDSVKLQALLDPFLGSNFQRPGDATKMAL VLIANNVLFGQDYRRWVTPWLLSLVEDIDAWNVFPLGHYIWKLTLDYLLKRFEVPDLS VTKETRLRYNIYRFAWAMEAIPALQKIVAPSDPKDNVHPRMCRWDCNKKSKDFYKTIQ KLESSDQLWALETLELTADEALLEYFVDLDVPLSESNEYLPIGHMEDRSDWGLGARQK KRSLKEKRASSGTKRMRTATALVDEMMDEGDDHGQGSEQSLDHGLAAPEPPTDPPQMQ SGNDPSFTEARTSPQAPIDLVQPHIANEPAFTEVTTGPEAPIGSTLPQTVNEPAGGPS DGAGLEHDDADDGQHHEPGVDVDIDDDVLGADGEHVTHVDDVVEEAVAVVVTLYNRSY RFLSWSTPNAIEIRSLSPESSVVHHGTAEILDPTEWARLKMASKYMASPFVDPLVTRR DVRDKIVEDYEAFKKEESARRNVSILGDQGADFFITLEDPNEEMTSEHIDACLNLLCK RMTGPKSKLYTTRGCMVDTIFFVNTIRMLHIEFSTEDARAKMQISDELRGYAEGKRPT YTKKWEDVDFILAPCNVGGHWVVAKIDLVRWTIKVVDSAITSDAKDNGVHASQMTPLT TLMPFICHQVGYFNNIRRKRRDLMPMPLDIHLSKAKVHLQNDSVSCGMFMIRYIEHIL " mobile_element 25592170..25592601 /note="source:scaffold_9_CACTA_0922 6877 7253" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25592602..25594054 /note="source:CACAO_M_E33977_F20_scaffold_4 15062 16544" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25594060..25635930 /locus_tag="TCM_014995" /note="dbxref CacaoGD:Thecc1EG014995" mRNA join(25594060..25594617,25595172..25595318, 25595487..25595640,25596295..25596430,25596860..25597005, 25597674..25597769,25597933..25597985,25599043..25599174, 25599860..25599911,25600016..25600135,25600444..25600578, 25601104..25601232,25601717..25601794,25601999..25602139, 25602407..25602501,25603000..25603196,25603365..25604152, 25604530..25604610,25604697..25604762,25604859..25604936, 25605636..25605866,25606232..25606363,25606478..25606654, 25606875..25607060,25607521..25607906,25608614..25609042, 25612543..25612913,25613431..25613752,25616012..25616411) /locus_tag="TCM_014995" /product="Cleavage and polyadenylation specificity factor 160 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014174" /inference="similar to AA sequence:Phytozome:GSVIVT01018506001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc906t18" CDS join(25594295..25594617,25595172..25595318, 25595487..25595640,25596295..25596430,25596860..25597005, 25597674..25597769,25597933..25597985,25599043..25599174, 25599860..25599911,25600016..25600135,25600444..25600578, 25601104..25601232,25601717..25601794,25601999..25602139, 25602407..25602501,25603000..25603196,25603365..25604152, 25604530..25604610,25604697..25604762,25604859..25604936, 25605636..25605866,25606232..25606363,25606478..25606654, 25606875..25607060,25607521..25607906,25608614..25608728) /locus_tag="TCM_014995" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cleavage and polyadenylation specificity factor 160 isoform 1" /protein_id="EOY22974.1" /db_xref="Phytozome:GSVIVT01018506001" /db_xref="TAIR:AT5G51660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGR0" /translation="MSYAAYKMMHWPTGIENCASGFVTHCRADFTPQIPLNQTEDLES EWPARRGIGPVPNLIVTAANLLEIYVVRVQEEGRREARNSTEVKRGGVLDGVSGVSLE LVCNYRLHGNVESMAVLSIGGGDGSRRRDSIILAFKDAKISVLEFDDSIHGLRTTSMH CFEGPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYDLQMIILKASQAGSGFVGEDD AFGSGGAVSARVESSYIINLRDLDVKHIKDFIFVHGYIEPVMVILHERELTWAGRVSW KHHTCMISALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVISANTIHYHSQ SASCALALNNYAISVDNSQDLPRSNFSVELDAANATWLLNDVALLSTKTGELLLLTLI YDGRVVQRLDLSKSKASVLTSDITTIGNSLFFLGSRLGDSLLVQFSGGSGVSALPSGL KEEVGDIEGDVPLAKRLRRSSSDALQDMVGGEELSLYGSAPNNTESAQKTFLFAVRDS LTNVGPLKDFSYGLRINADVNATGIAKQSNYELVCCSGHGKNGALCVLRQSIRPEMIT EVELTGCKGIWTVYHKSTRSHSADLSKVTDDDDEYHAYLIISLEARTMVLETADLLTE VTESVDYYVQGRTIAAGNLFGRRRVVQVYERGARILDGSFMTQELSIPSPNSESSPGS ENSTVISVSIADPYVLLRMTDGSILLLVGDPATCTVSINTPTAFEGSKKMVSACTLYH DKGPEPWLRKASTDAWLSTGVGESIDGADGGPHDQGDIYCVVCYESGALEIFDVPNFN CVFSMEKFASGRTRLVDAYTLESSKDSEKVINKSSEELTGQGRKENVQNLKVVELAMQ RWSANHSRPFLFGILTDGTILCYHAYLFEGSENASKVEDSVVAQNSVGLSNINASRLR NLRFIRIPLDAYTREEMSNGTLSQRITIFKNISGYQGFFLSGSRPAWFMVFRERLRVH PQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQIPSASNYDNYWPVQKIPLRGTP HQVTYFAERNLYPIIVSVPVHKPVNQVLSSLVDQEVGHQMDNHNLSSDELQRTYTVDE FEVRILEPEKSGGPWETKATIPMQSSENALTVRVVTLFNTTTKENESLLAIGTAYIQG EDVAARGRVILCSIGRNTDNLQNLVSEVYSKELKGAISALASLQGHLLIASGPKIILH NWTGSELNGIAFYDAPPLYVVSLNIVKNFILLGDVHKSIYFLSWKEQGAQLSLLAKDF GSLDCFATEFLIDGSTLSLMVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHV TKFLRLQMLSTSSDRTSATAGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQK KLVDAVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLDIAHQI GTTRSQILSNLNDLTLGTSFL" mRNA join(25595612..25595640,25596295..25596430, 25596860..25597005,25597674..25597769,25597933..25597985, 25599043..25599174,25599860..25599911,25600016..25600135, 25600444..25600578,25601104..25601232,25601717..25601794, 25601999..25602139,25602407..25602501,25603000..25603196, 25603365..25604152,25604530..25604610,25604697..25604762, 25604859..25604936,25605636..25605866,25606232..25606363, 25606478..25606654,25606875..25607060,25607521..25607906, 25608614..25608961,25635421..25635930) /locus_tag="TCM_014995" /product="Cleavage and polyadenylation specificity factor 160 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb06g003570.1" /inference="alignment:exonerate- protein:2:ricco:30147.m014174" /inference="similar to AA sequence:Phytozome:GSVIVT01018506001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc906t19; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc906t18; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc894t34_C1" mRNA join(25595616..25595640,25596295..25596430, 25596860..25597005,25597674..25597769,25597933..25597985, 25599043..25599174,25599860..25599911,25600016..25600135, 25600444..25600578,25601104..25601232,25601717..25601794, 25601999..25602139,25602407..25602501,25603000..25603196, 25603365..25604152,25604530..25604610,25604697..25604762, 25604859..25604936,25605636..25605866,25606232..25606363, 25606478..25606654,25607521..25607906,25608614..25609261) /locus_tag="TCM_014995" /product="Cleavage and polyadenylation specificity factor subunit 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Sb06g003570.1" /inference="alignment:exonerate- protein:2:ricco:30147.m014174" /inference="similar to AA sequence:ricco:30147.m014174" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc904t32; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc906t18; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc894t34_C1" CDS join(25595617..25595640,25596295..25596430, 25596860..25597005,25597674..25597769,25597933..25597985, 25599043..25599174,25599860..25599911,25600016..25600135, 25600444..25600578,25601104..25601232,25601717..25601794, 25601999..25602139,25602407..25602501,25603000..25603196, 25603365..25604152,25604530..25604610,25604697..25604762, 25604859..25604936,25605636..25605866,25606232..25606363, 25606478..25606654,25606875..25607060,25607521..25607906, 25608614..25608728) /locus_tag="TCM_014995" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cleavage and polyadenylation specificity factor 160 isoform 2" /protein_id="EOY22975.1" /db_xref="Phytozome:GSVIVT01018506001" /db_xref="TAIR:AT5G51660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGR0" /translation="MIILKASQAGSGFVGEDDAFGSGGAVSARVESSYIINLRDLDVK HIKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAV NLPHDAYKLLAVPSPIGGVLVISANTIHYHSQSASCALALNNYAISVDNSQDLPRSNF SVELDAANATWLLNDVALLSTKTGELLLLTLIYDGRVVQRLDLSKSKASVLTSDITTI GNSLFFLGSRLGDSLLVQFSGGSGVSALPSGLKEEVGDIEGDVPLAKRLRRSSSDALQ DMVGGEELSLYGSAPNNTESAQKTFLFAVRDSLTNVGPLKDFSYGLRINADVNATGIA KQSNYELVCCSGHGKNGALCVLRQSIRPEMITEVELTGCKGIWTVYHKSTRSHSADLS KVTDDDDEYHAYLIISLEARTMVLETADLLTEVTESVDYYVQGRTIAAGNLFGRRRVV QVYERGARILDGSFMTQELSIPSPNSESSPGSENSTVISVSIADPYVLLRMTDGSILL LVGDPATCTVSINTPTAFEGSKKMVSACTLYHDKGPEPWLRKASTDAWLSTGVGESID GADGGPHDQGDIYCVVCYESGALEIFDVPNFNCVFSMEKFASGRTRLVDAYTLESSKD SEKVINKSSEELTGQGRKENVQNLKVVELAMQRWSANHSRPFLFGILTDGTILCYHAY LFEGSENASKVEDSVVAQNSVGLSNINASRLRNLRFIRIPLDAYTREEMSNGTLSQRI TIFKNISGYQGFFLSGSRPAWFMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYV TSQGILKICQIPSASNYDNYWPVQKIPLRGTPHQVTYFAERNLYPIIVSVPVHKPVNQ VLSSLVDQEVGHQMDNHNLSSDELQRTYTVDEFEVRILEPEKSGGPWETKATIPMQSS ENALTVRVVTLFNTTTKENESLLAIGTAYIQGEDVAARGRVILCSIGRNTDNLQNLVS EVYSKELKGAISALASLQGHLLIASGPKIILHNWTGSELNGIAFYDAPPLYVVSLNIV KNFILLGDVHKSIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDEQK NIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDRTSATAGSDKTN RFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDAVPHVAGLNPRSFRQFHSNGKA HRPGPDSIVDCELLCHYEMLPLEEQLDIAHQIGTTRSQILSNLNDLTLGTSFL" CDS join(25595617..25595640,25596295..25596430, 25596860..25597005,25597674..25597769,25597933..25597985, 25599043..25599174,25599860..25599911,25600016..25600135, 25600444..25600578,25601104..25601232,25601717..25601794, 25601999..25602139,25602407..25602501,25603000..25603196, 25603365..25604152,25604530..25604610,25604697..25604762, 25604859..25604936,25605636..25605866,25606232..25606363, 25606478..25606654,25607521..25607906,25608614..25608728) /locus_tag="TCM_014995" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014174" /codon_start=1 /product="Cleavage and polyadenylation specificity factor subunit 1 isoform 3" /protein_id="EOY22976.1" /db_xref="TAIR:AT5G51660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGR0" /translation="MIILKASQAGSGFVGEDDAFGSGGAVSARVESSYIINLRDLDVK HIKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAV NLPHDAYKLLAVPSPIGGVLVISANTIHYHSQSASCALALNNYAISVDNSQDLPRSNF SVELDAANATWLLNDVALLSTKTGELLLLTLIYDGRVVQRLDLSKSKASVLTSDITTI GNSLFFLGSRLGDSLLVQFSGGSGVSALPSGLKEEVGDIEGDVPLAKRLRRSSSDALQ DMVGGEELSLYGSAPNNTESAQKTFLFAVRDSLTNVGPLKDFSYGLRINADVNATGIA KQSNYELVCCSGHGKNGALCVLRQSIRPEMITEVELTGCKGIWTVYHKSTRSHSADLS KVTDDDDEYHAYLIISLEARTMVLETADLLTEVTESVDYYVQGRTIAAGNLFGRRRVV QVYERGARILDGSFMTQELSIPSPNSESSPGSENSTVISVSIADPYVLLRMTDGSILL LVGDPATCTVSINTPTAFEGSKKMVSACTLYHDKGPEPWLRKASTDAWLSTGVGESID GADGGPHDQGDIYCVVCYESGALEIFDVPNFNCVFSMEKFASGRTRLVDAYTLESSKD SEKVINKSSEELTGQGRKENVQNLKVVELAMQRWSANHSRPFLFGILTDGTILCYHAY LFEGSENASKVEDSVVAQNSVGLSNINASRLRNLRFIRIPLDAYTREEMSNGTLSQRI TIFKNISGYQGFFLSGSRPAWFMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYV TSQGILKICQIPSASNYDNYWPVQKIPLRGTPHQVTYFAERNLYPIIVSVPVHKPVNQ VLSSLVDQEVGHQMDNHNLSSDELQRTYTVDEFEVRILEPEKSGGPWETKATIPMQSS ENALTVRVVTLFNTTTKENESLLAIGTAYIQGEDVAARGRVILCSIGRNTDNLQNLVS EVYSKELKGAISALASLQGHLLIASGPKIILHNWTGSELNGIAFYDAPPLYVVSLNII FYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDRTSATAGSDKTNRFAL LFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDAVPHVAGLNPRSFRQFHSNGKAHRPG PDSIVDCELLCHYEMLPLEEQLDIAHQIGTTRSQILSNLNDLTLGTSFL" gene 25611485..25616965 /locus_tag="TCM_014996" /note="dbxref CacaoGD:Thecc1EG014996" mRNA join(25611485..25611661,25614457..25614635, 25615016..25615154,25615391..25615576,25616294..25616431, 25616696..25616965) /locus_tag="TCM_014996" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014995t2" /note="quality class is strong, express is medium, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc894t19" misc_feature join(<25613727..25613752,25614457..>25614482) /locus_tag="TCM_014996" /note="Gene fragment aasize:17; quality class is strongpartial, express is strong, homology is none, intron is medium, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc904t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc894t3; dbxref CacaoGD:Thecc1EG014997t2" CDS join(25614517..25614635,25615016..25615154, 25615391..25615576,25616294..25616431,25616696..25616791) /locus_tag="TCM_014996" /note="paralog of Thecc1EG014995t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22977.1" /translation="MDNHNLSSDEFHQTYTVDEFEVRILEPGGPWETGNYTNADLKDA ISALASLQGHLLIASGRKIILHNWTGSELNGIAFYDAPPLYVVKNFILLADDHKSRCF LSWKEQGAQLSLLAKDLGFFDCLATEFLIDRNTLSLMVSDKQKNIQVELTGCRGIWTV YHKSTCSRNADLSKVTDDDEYHAYLIITLEARTMVLETADLLTEVTESVDYYVQGRTI ATARKFV" mobile_element 25618461..25622910 /note="source:CACAO_M_E22931_F20_scaffold_3 1 4450" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25620603..25622903) /locus_tag="TCM_014999" /note="dbxref CacaoGD:Thecc1EG014999" mRNA complement(join(25620603..25621132,25621247..25621483, 25621627..25621771,25621851..25621992,25622059..25622903)) /locus_tag="TCM_014999" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018183t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.79 coverage" CDS complement(join(25621992,25622059..25622609)) /locus_tag="TCM_014999" /note="paralog of Thecc1EG018183t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22978.1" /translation="MCLWERFGTCTPMPNAYPFASFSVNNPLSRNNYRAWAWHDRQRG NVLEVMDVTKEFNPRPYVHPINGFGDPVIYYDLHPLQSERMSSRGINFCIWVHSFHLP SMIESFSSGGDRNFCSVEVYSLYRVARQFGFDQLAPPDSSSPISFSSCVSSFLMTELS LHSDKLKSCTVPAFDRVGTHTTG" mobile_element 25623698..25626003 /note="source:CACAO_M_E22931_F20_scaffold_3 4451 6756" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25626008..25634752 /locus_tag="TCM_015000" /note="dbxref CacaoGD:Thecc1EG015000" mRNA join(25626008..25626123,25626312..25626393, 25626515..25626600,25629933..25630015,25630104..25630152, 25631348..25631429,25633504..25633647,25634104..25634752) /locus_tag="TCM_015000" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6540t6" CDS join(25626595..25626600,25629933..25630015, 25630104..25630152,25631348..25631404) /locus_tag="TCM_015000" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22979.1" /translation="MVVMFSRPISWIMSLNGDAVVPFMSTRIMSGNLSYVLHNTSVAT IMVDYAAFETNEERALWNTP" mobile_element 25626941..25628318 /note="source:CACAO_M_S_E17583_F9_scaffold_3 1 1414" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25637267..25638118) /locus_tag="TCM_015002" /note="dbxref CacaoGD:Thecc1EG015002" mRNA complement(25637267..25638118) /locus_tag="TCM_015002" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(25637319..25637636) /locus_tag="TCM_015002" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22980.1" /translation="MPFLPLEKEQISESLKIKSTRTVGLVGGSKPIPLIAKMESHLMI IEINGLDINLAHPTGRVHPGQTMARTHLKTFFERINEEMKGSLWPLVDGGPNCKCALA RSH" gene 25643572..25645358 /locus_tag="TCM_015003" /note="dbxref CacaoGD:Thecc1EG015003" mRNA 25643572..25645358 /locus_tag="TCM_015003" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s14310.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14310.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6479t1" CDS 25643701..25645110 /locus_tag="TCM_015003" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22981.1" /db_xref="Phytozome:POPTR_0012s14310.1" /db_xref="TAIR:AT5G51670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAK1" /translation="MALETWLIKVKKTISNSLDTARSSIPNSKASKHKANVGVLSFEI AGLMSKLLHLWNSLSDKSIIRLRDESISLEGVRKIVSNDESFLLGLACAEMAENVRLV AKSISRISKRCQDSNLQCFDRWFDEFANSGHDSHGWVLSSKDMEAKNKKMDRYVTITA TLYKEIEELSTIENSLRKSFQCKEYESSIKEQKIIDLQQKLFWQRQEVKCLKERSLWN RSFDMVVSMLVRSIFTILGRINLVFGIGHGYPPSLPRCLSASATVHPTENPNAYNFVS GPLKSSKPEEKKDLAVRFFESNSKLLKPPPSTLGAAALALHYANLIIIMEKMIKSPQL VGVDARDDLYSMLPSSIRSSLRARLKGVGFSASDPVLAGEWRTALGRILAWLSPLAHN MIKWQSERSFEQQNLLPKTNVLLLQTLFFANKEKTEAAITELLVGLNYIWRFEREMTA KALFECSNFNGLLNLQSSS" gene complement(25647823..25650261) /locus_tag="TCM_015004" /note="dbxref CacaoGD:Thecc1EG015004" mRNA complement(join(25647823..25648150,25649103..25649230, 25649597..25649613,25649706..25650261)) /locus_tag="TCM_015004" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g33180.1" /inference="similar to AA sequence:Phytozome:Glyma16g33180.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(join(25647994..25648150,25649103..25649230, 25649597..25649613,25649706..25650168)) /locus_tag="TCM_015004" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22982.1" /db_xref="Phytozome:Glyma16g33180.1" /translation="MESVESMDRKLCAKACSFNGSAQRNNLCSQCYKDFLVGEFQNHN PIGEPLIPTTDQPLNSCFTVPPYSVSHVNNSNGSVGFTFGWTNNSGGASLASTKNRCN SRNKRVGLTGFTCRCGNLFCGKHRYPEEHECCVDLKAIGREALVKENPDCKGVGPDNL IEVYGALTIAKNQMENSVFSNATFLHDQNLLGDYGFSSGIMFCQIRSDMAGESHSLKG APELPSKGVVALPSKGAVVISFGGDLVLLDVEECQI" gene complement(25650477..25655292) /locus_tag="TCM_015005" /note="dbxref CacaoGD:Thecc1EG015005" mRNA complement(join(25650477..25651643,25651961..25652124, 25652339..25653236,25653405..25653565,25654540..25654674, 25654763..25655199)) /locus_tag="TCM_015005" /product="1-amino-cyclopropane-1-carboxylate synthase 12 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018494001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016114t1" /inference="similar to AA sequence:ricco:30147.m014167" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1458t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6494t2" mRNA complement(join(25650538..25651643,25651961..25653236, 25653405..25653565,25654540..25654674,25654763..25655292)) /locus_tag="TCM_015005" /product="1-amino-cyclopropane-1-carboxylate synthase 12 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018494001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016114t1" /inference="similar to AA sequence:ricco:30147.m014167" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6494t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6494t2" gene 25650622..25652135 /locus_tag="TCM_015006" /note="dbxref CacaoGD:Thecc1EG015006" mRNA join(25650622..25651715,25651980..25652135) /locus_tag="TCM_015006" /product="Hydroxyproline-rich glycoprotein family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14290.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14290.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1295t7" CDS join(25650882..25651715,25651980..25652087) /locus_tag="TCM_015006" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein, putative" /protein_id="EOY22987.1" /db_xref="Phytozome:POPTR_0015s14290.1" /db_xref="TAIR:AT5G51680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICX5" /translation="MAEKEPTEHSNKRKTRLPPSVPFLWEVRPGIAKKDWKPGVSSVT PTLPPRTPIKLIASVPFNWEEKPGTPLPRFSQPPVEPAAVPLSANLMTLPPRPVYTPA YFNGYDNNDDRGDGSDEQDVVPEMDLETFGFETDDSFSSAPSLLANCLVASTAICTAV PVQKTYHADNSSDHPETPSSPASETESSTSSYATGTSSLVGASFLECLFPLLPPNSGF LEKARYPNHQGSQTQNDFDRESNNTVVIRRPATLGELIMMSRRMSYQRKAVLMPEQHL SMEFLKERAPGCCIFGTGIKLIEGLQWKKFQPRLKFL" mRNA complement(join(25651687..25651716,25651981..25652124, 25652339..25653236,25653405..25653565,25654540..25654674, 25654763..25655199)) /locus_tag="TCM_015005" /product="1-amino-cyclopropane-1-carboxylate synthase 12 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018494001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016114t1" /inference="similar to AA sequence:ricco:30147.m014167" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1458t1; alternateUTRof:Thecc1EG015005t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6494t2" mRNA complement(join(25651687..25651716,25651981..25653236, 25653405..25653565,25654540..25654674,25654763..25655189)) /locus_tag="TCM_015005" /product="1-amino-cyclopropane-1-carboxylate synthase 12 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018494001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016114t1" /inference="similar to AA sequence:ricco:30147.m014167" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2076t1; alternateUTRof:Thecc1EG015005t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6494t2" CDS complement(join(25652381..25653236,25653405..25653565, 25654540..25654674,25654763..25655215)) /locus_tag="TCM_015005" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014167; paralog of Thecc1EG016114t1" /codon_start=1 /product="1-amino-cyclopropane-1-carboxylate synthase 12 isoform 1" /protein_id="EOY22983.1" /db_xref="TAIR:AT5G51690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYY0" /translation="MTLTRSIQHRNPKPEVQSRKPSGATAMRLIVPLQGVVQGRGGLI FGSLIPCALFYFLQLYLKRHRSPNSQSSPSSPSTSSSNLAEMTRTSSRSNLLSRGSIG PVRISSRASSIAKPNDSPYYVGLDKASEDPYDRIGNPDGVIQLGLSENRLCFDLIEKW MLENLRDSIMGREGGDLSISGIATYQPFDGTMELKLAMAGFMSRVMGGAVSFEPLQMV LTAGATPAIETLCFCLADHGNAFLVPTPYYPGFDRDVKWRTGVELIPVHCRSTDNFML TISALDQAFNQTRKRGTKIRGILLSNPANPVGNLLSREMLYELLDFAREKNIHIISDE IFAGSMYGKEEFVSMAEVLDSEDSDKSRVHIVYGLSKDLSLPGFRVGMIYSFNENVLA AARKLTRFSSISAPTQRLLVSMLSDTRFIEEYIETNKKRIQNMHDLFVAGLQELGINC ADSSAGLYCWADMSKLTPTYSEKGELELWDMLLNVAKINVTPGSACHCIEPGWFRCCF TALAPEDIPVVMGRIREVAEICTQSS" CDS complement(join(25652381..25653236,25653405..25653565, 25654540..25654674,25654763..25655137)) /locus_tag="TCM_015005" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014167; paralog of Thecc1EG016114t1" /codon_start=1 /product="1-amino-cyclopropane-1-carboxylate synthase 12 isoform 2" /protein_id="EOY22984.1" /db_xref="TAIR:AT5G51690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYY0" /translation="MRLIVPLQGVVQGRGGLIFGSLIPCALFYFLQLYLKRHRSPNSQ SSPSSPSTSSSNLAEMTRTSSRSNLLSRGSIGPVRISSRASSIAKPNDSPYYVGLDKA SEDPYDRIGNPDGVIQLGLSENRLCFDLIEKWMLENLRDSIMGREGGDLSISGIATYQ PFDGTMELKLAMAGFMSRVMGGAVSFEPLQMVLTAGATPAIETLCFCLADHGNAFLVP TPYYPGFDRDVKWRTGVELIPVHCRSTDNFMLTISALDQAFNQTRKRGTKIRGILLSN PANPVGNLLSREMLYELLDFAREKNIHIISDEIFAGSMYGKEEFVSMAEVLDSEDSDK SRVHIVYGLSKDLSLPGFRVGMIYSFNENVLAAARKLTRFSSISAPTQRLLVSMLSDT RFIEEYIETNKKRIQNMHDLFVAGLQELGINCADSSAGLYCWADMSKLTPTYSEKGEL ELWDMLLNVAKINVTPGSACHCIEPGWFRCCFTALAPEDIPVVMGRIREVAEICTQSS " CDS complement(join(25652381..25653236,25653405..25653565, 25654540..25654674,25654763..25655137)) /locus_tag="TCM_015005" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014167; paralog of Thecc1EG016114t1" /codon_start=1 /product="1-amino-cyclopropane-1-carboxylate synthase 12 isoform 2" /protein_id="EOY22985.1" /db_xref="TAIR:AT5G51690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYY0" /translation="MRLIVPLQGVVQGRGGLIFGSLIPCALFYFLQLYLKRHRSPNSQ SSPSSPSTSSSNLAEMTRTSSRSNLLSRGSIGPVRISSRASSIAKPNDSPYYVGLDKA SEDPYDRIGNPDGVIQLGLSENRLCFDLIEKWMLENLRDSIMGREGGDLSISGIATYQ PFDGTMELKLAMAGFMSRVMGGAVSFEPLQMVLTAGATPAIETLCFCLADHGNAFLVP TPYYPGFDRDVKWRTGVELIPVHCRSTDNFMLTISALDQAFNQTRKRGTKIRGILLSN PANPVGNLLSREMLYELLDFAREKNIHIISDEIFAGSMYGKEEFVSMAEVLDSEDSDK SRVHIVYGLSKDLSLPGFRVGMIYSFNENVLAAARKLTRFSSISAPTQRLLVSMLSDT RFIEEYIETNKKRIQNMHDLFVAGLQELGINCADSSAGLYCWADMSKLTPTYSEKGEL ELWDMLLNVAKINVTPGSACHCIEPGWFRCCFTALAPEDIPVVMGRIREVAEICTQSS " CDS complement(join(25652381..25653236,25653405..25653565, 25654540..25654674,25654763..25655137)) /locus_tag="TCM_015005" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m014167; paralog of Thecc1EG016114t1" /codon_start=1 /product="1-amino-cyclopropane-1-carboxylate synthase 12 isoform 2" /protein_id="EOY22986.1" /db_xref="TAIR:AT5G51690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYY0" /translation="MRLIVPLQGVVQGRGGLIFGSLIPCALFYFLQLYLKRHRSPNSQ SSPSSPSTSSSNLAEMTRTSSRSNLLSRGSIGPVRISSRASSIAKPNDSPYYVGLDKA SEDPYDRIGNPDGVIQLGLSENRLCFDLIEKWMLENLRDSIMGREGGDLSISGIATYQ PFDGTMELKLAMAGFMSRVMGGAVSFEPLQMVLTAGATPAIETLCFCLADHGNAFLVP TPYYPGFDRDVKWRTGVELIPVHCRSTDNFMLTISALDQAFNQTRKRGTKIRGILLSN PANPVGNLLSREMLYELLDFAREKNIHIISDEIFAGSMYGKEEFVSMAEVLDSEDSDK SRVHIVYGLSKDLSLPGFRVGMIYSFNENVLAAARKLTRFSSISAPTQRLLVSMLSDT RFIEEYIETNKKRIQNMHDLFVAGLQELGINCADSSAGLYCWADMSKLTPTYSEKGEL ELWDMLLNVAKINVTPGSACHCIEPGWFRCCFTALAPEDIPVVMGRIREVAEICTQSS " mobile_element 25656245..25656504 /note="source:scaffold_9_CACTA_0932 1811 2086" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25656495..25656588 /note="source:scaffold_4_CACTA_0510 2101 2208" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25656505..25657348 /note="source:CACAO_MITE22_scaffold_2 1 865" /mobile_element_type="transposon:TIR/MITE" mobile_element 25657352..25657770 /note="source:scaffold_9_CACTA_0932 1090 1502" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25658556..25658674) /note="source:CACAO_M_E23991_F4_scaffold_4 2999 3121" /mobile_element_type="retrotransposon:LTR/Copia" gene 25661726..25666975 /locus_tag="TCM_015007" /note="dbxref CacaoGD:Thecc1EG015007" mRNA join(25661726..25662381,25662475..25662558, 25662806..25662965,25663124..25663232,25663698..25663748, 25663952..25664049,25664150..25664228,25664350..25664412, 25664549..25664599,25664729..25664787,25665023..25665101, 25665200..25665256,25665355..25665417,25665607..25665669, 25665759..25665803,25665914..25666017,25666545..25666648, 25666942..25666975) /locus_tag="TCM_015007" /product="Cell cycle regulated microtubule associated protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s14270.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019918001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1222t3" CDS join(25662189..25662381,25662475..25662558, 25662806..25662965,25663124..25663232,25663698..25663748, 25663952..25664049,25664150..25664228,25664350..25664412, 25664549..25664599,25664729..25664787,25665023..25665101, 25665200..25665256,25665355..25665417,25665607..25665669, 25665759..25665803,25665914..25666017,25666545..25666569) /locus_tag="TCM_015007" /codon_start=1 /product="Cell cycle regulated microtubule associated protein, putative" /protein_id="EOY22988.1" /db_xref="Phytozome:GSVIVT01019918001" /db_xref="TAIR:AT4G22860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TWC4" /translation="MDDQIGEHMEEFFSIEEPSEAEEFFDIKYEFDAPQCYDFSRPER YWEAKEAELWFESAGSYPPSPFVIKLKWRYDVDGDEEFSNGSVDYDDREVCNCFNEDN LRAKTESRVNSSLSRNSTLMKPTASYLAKQNQSRAVHFTQLHRRFRKFLDRLDDKSTK SSSVTEGDATKRQKLGAGYLCKVANLSHQALFVHKKPKTVRSLDGNSVRAKPKVTIPR ELELQTARRAQRRRSKIKTESEENAKSHAHFFKALPLNRKILEAPSLPLPKKSLPQRP EFQLFHLRTSERARQHASNSAMKLPNYISTSRNEKTGLRSFNSVNALKEEKFEAVNKF KACPLNKKIMSSIGQTGVLQKETTAPMEFKILANRRLPDEPPIELLNKLSLSSEVHSG EKSRAKMVFSEGFKENETVPFLLQCQIINVGKENLQRIGGMEYQCRNDRTIEIGRQLN VNRSLRLDIT" gene complement(25667171..25675002) /locus_tag="TCM_015008" /note="dbxref CacaoGD:Thecc1EG015008" mRNA complement(join(25667171..25668103,25668611..25668981, 25669186..25669524,25669600..25669728,25669833..25669906, 25669983..25670054,25670144..25670215,25670307..25670378, 25670459..25670530,25670626..25670697,25670790..25670861, 25670958..25671029,25671117..25671188,25671264..25671335, 25671442..25671513,25671598..25671669,25671782..25671853, 25671992..25672060,25672147..25672218,25672316..25672387, 25672629..25672700,25672808..25672879,25672962..25673033, 25673124..25673195,25673285..25673356,25673514..25673652, 25674287..25675002)) /locus_tag="TCM_015008" /product="ERECTA-like 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037393t1" /inference="similar to AA sequence:ricco:30147.m014165" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6766t4" CDS complement(join(25667735..25668103,25668611..25668981, 25669186..25669524,25669600..25669728,25669833..25669906, 25669983..25670054,25670144..25670215,25670307..25670378, 25670459..25670530,25670626..25670697,25670790..25670861, 25670958..25671029,25671117..25671188,25671264..25671335, 25671442..25671513,25671598..25671669,25671782..25671853, 25671992..25672060,25672147..25672218,25672316..25672387, 25672629..25672700,25672808..25672879,25672962..25673033, 25673124..25673195,25673285..25673356,25673514..25673652, 25674287..25674404)) /locus_tag="TCM_015008" /note="dbxref ricco:30147.m014165; paralog of Thecc1EG037393t1" /codon_start=1 /product="ERECTA-like 1" /protein_id="EOY22989.1" /db_xref="TAIR:AT5G62230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LGW6" /translation="MEEEVLLERRKRRKELYGGLVMVMVFLVLCPIASSLNDEGKALM SIKESFSNVANVLLDWDDVHNADFCSWRGVFCDNISLSVVSLNLSNLILGGEISPAIG DLKNLQSIDLEGNKLTGQIPDEIGNCGSLVHLDLSDNLLYGDIPFSISKLKQLEFLNL KNNQLTGPIPSTLTQIPYLKILDLARNQLTGEIPRLIYWNEVLQYLGLRGNKLTGTLS SDMCQLTGLWYFDVRGNDLTGRIPDNIGNCTSFEILDISYNQITGEIPYNIGFLQVAT LSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPSILGNLSYTGKLYLHGNKLTG PIPPELGNMSKLSYLQLNDNQLVGTIPAELGKLVQLFELNLANNYLEGPIPHNISSCT ALNQFNVHGNRLNGSIPLGFRTLESLTYLNLSMNDFKGQIPIELGHIINLDTLDLTGN KFSGAIPASIGDLEHLLTLNLSSNELNGPLPAECGNLRSIQIMDLSFNSLCGNIPAEL GQLQNIVSLILNNNKLQGEIPEQLTNCFSLANLNVSYNNLSGIIPPIRNFSRFSSDSF IGNPLLCGNWLGSICGPSLPKSRVFSRAAVVCMTLGFITLVAMIIVAIYKSNQQKQMM KGPMKTVEGPPKLVVLHMDMAIHTFDDIMRFTENLSDKYIIGYGASSTVYKCMLKNSR PIAIKRLYNQCPHNLREFETELETIGSIRHRNIVSLHGYSLSPYGNLLFYDYMENGSL WDLLHGPSKKVKLDWETRLKVAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEA HLSDFGIAKCIPTTKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTG KKAVDNESNLHQLILSKADDNTVMEAVDPEVSITCMDLSHVRKTFQLALLCTKRHPSE RPTMHEVARVLVSLLPAPPTKLSSAPPKSIDYSQFVIGKGQKRLQLEQQQPQVEQETN SSDAQWFVRFREVISKNTL" mobile_element 25668422..25668471 /note="source:CACAO_M_E5958_F322_scaffold_2 1138 1183" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25675253..25677481 /locus_tag="TCM_015009" /note="dbxref CacaoGD:Thecc1EG015009" mRNA join(25675253..25675406,25676341..25677481) /locus_tag="TCM_015009" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage" CDS join(25675368..25675406,25676341..25676556) /locus_tag="TCM_015009" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY22990.1" /translation="MRSLIIEELELSQCSQVGLYWDWDPPNLCSKSKIYPQPSDPVLL VSKAQTCIGRLSLELDKTEDRACVFVIWWILQENPQIQLN" mobile_element complement(25678072..25678126) /note="source:CACAO_M_E42827_F134_scaffold_5 1040 1094" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25678391..25681335) /locus_tag="TCM_015010" /note="dbxref CacaoGD:Thecc1EG015010" mRNA complement(join(25678391..25678866,25678967..25679184, 25679865..25680025,25680222..25680304,25681233..25681335)) /locus_tag="TCM_015010" /product="Binding,zinc ion binding isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G51700.1" /inference="similar to AA sequence:ricco:30147.m014164" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc548t10" mRNA complement(join(25678395..25678866,25678967..25679184, 25679865..25680025,25680212..25680439)) /locus_tag="TCM_015010" /product="Cysteine and histidine-rich domain-containing protein RAR1 isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G51700.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc368t8; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc368t8; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9103t2" CDS complement(25678597..25678767) /locus_tag="TCM_015010" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cysteine and histidine-rich domain-containing protein RAR1 isoform 2" /protein_id="EOY22992.1" /db_xref="TAIR:AT5G51700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SE33" /translation="MGMSRNEFLLFVKRFSLSFCLLFFLMDVGMVGNLNIETSFPRMN THSAFLDSLQQL" CDS complement(join(25678771..25678866,25678967..25679184, 25679865..25680025,25680222..25680304,25681233..25681334)) /locus_tag="TCM_015010" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014164" /codon_start=1 /product="Binding,zinc ion binding isoform 1" /protein_id="EOY22991.1" /db_xref="TAIR:AT5G51700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SE33" /translation="MAEQADKLRCQRIGCNATFTEDDNPEGSCTYHDSPIFHDGMKEW SCCKKRSHDFSLFLEIPGCKTGKHTIEKPVLTKPAAITKNPTSTPAFTLASSATSKES CPRCLQGFFCSDHGSQPKELNSTTASPGESSANVQASAPPRKKIDINQPQTCKNKGCG KVFKEKDNHEIACSYHPGPAIFHDRMRGWKCCDIHVKEFDEFMTIPPCAKGWHNADPV S" gene complement(25681863..25689753) /locus_tag="TCM_015011" /note="dbxref CacaoGD:Thecc1EG015011" mRNA complement(join(25681863..25682524,25683134..25683229, 25683343..25683387,25684566..25684643,25684737..25684925, 25685291..25685386,25685486..25685539,25685616..25685712, 25685869..25685957,25686064..25686141,25686246..25686314, 25686403..25686486,25686587..25686658,25687071..25687145, 25687278..25687353,25687591..25687652,25687773..25687857, 25687956..25688023,25688522..25688565,25689099..25689391, 25689555..25689753)) /locus_tag="TCM_015011" /product="Glutathione-regulated potassium-efflux system protein kefB" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018483001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037277t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14240.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1520t11_C2" CDS complement(join(25682483..25682524,25683134..25683229, 25683343..25683387,25684566..25684643,25684737..25684925, 25685291..25685386,25685486..25685539,25685616..25685712, 25685869..25685957,25686064..25686141,25686246..25686314, 25686403..25686486,25686587..25686658,25687071..25687145, 25687278..25687353,25687591..25687652,25687773..25687857, 25687956..25688023,25688522..25688565,25689099..25689391, 25689555..25689694)) /locus_tag="TCM_015011" /note="paralog of Thecc1EG037277t1" /codon_start=1 /product="Glutathione-regulated potassium-efflux system protein kefB" /protein_id="EOY22993.1" /db_xref="Phytozome:POPTR_0012s14240.1" /db_xref="TAIR:AT5G51710.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B5X0N6" /translation="MIPPGQLKSQLTNPSYVYKPPFFDPDFQFNRVSLHTFPPVLFSF SAXXXXXXXXXXXXERERGRFTESMTILSARRGVFGCAYCLVIILLCARICASSRSDK EIRERFYGNLVNSSASDTGEESIAKMFDRVLDKEFPENDQPEGSDASSFNTSVADQQA VLETVAKITHEKTKRNDTQEANGTRSFQIQDVFSLENEDSDETTTLIDKKDNVFVMSN KKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSLIGPGGLKFI SEMVQVETVAQFGVIFLLFALGLEFSLAKLKVVGPVAVLGGLLQIVIFMCLCGIIAVL CGAKLSEGVFVGSFLSMSSTAVVVKFLVERNSTNVLHGQVTIGTLIFQDCAVGLLFAL LPVLGGSSGLLHGMISMGKLMLVLSIYLTVASVLSWSFVPRFLKLMMQISSQTNELYQ LAAVAFCLLSAWCSDKLGLSLELGSFVAGVMISTTDFAQHTLDQVEPIRNLFAALFLS GIGMLIHVHFLWNHVDILLAAVILVIVVKTAVAAVVTKAFGYSFRTSFHVGVLLAQIG EFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGVLLQWFPSE NSSQNEEKVSIIEAHNRLL" mobile_element 25689486..25689566 /note="source:scaffold_1_CACTA_0031 7 79" /mobile_element_type="transposon:TIR/CACTA" gene 25691333..25692825 /locus_tag="TCM_015013" /note="dbxref CacaoGD:Thecc1EG015013" mRNA join(25691333..25691896,25692010..25692082, 25692437..25692825) /locus_tag="TCM_015013" /product="CDGSH iron sulfur domain-containing protein 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018482001" /inference="similar to AA sequence:Phytozome:POPTR_0015s14240.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4598t6_C2" CDS join(25691643..25691896,25692010..25692082, 25692437..25692457) /locus_tag="TCM_015013" /codon_start=1 /product="CDGSH iron sulfur domain-containing protein 2" /protein_id="EOY22994.1" /db_xref="Phytozome:POPTR_0015s14240.1" /db_xref="TAIR:AT5G51720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICY0" /translation="MASTMSTYVAGFCHNLLSTAGPKRSRGVGVGVGVVTINARPKRS AAVVVRAEGQTINPEIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKH NKATGDNSITNYT" gene 25697798..25700399 /locus_tag="TCM_015014" /note="dbxref CacaoGD:Thecc1EG015014" mRNA join(25697798..25699861,25700107..25700399) /locus_tag="TCM_015014" /product="Glycosyltransferase 18" /inference="alignment:exonerate- protein:2:ricco:30147.m014161" /inference="similar to AA sequence:ricco:30147.m014161" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6528t1" CDS 25698264..25699853 /locus_tag="TCM_015014" /note="dbxref ricco:30147.m014161" /codon_start=1 /product="Glycosyltransferase 18" /protein_id="EOY22995.1" /db_xref="TAIR:AT5G62220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVB4" /translation="MLPTSTPKSPCFPNSSTPIPSPKKPQTPELSSIERKNSSNSLHL QPYIFLPSHHRLWLLFFIISLQIILLLMARALPFSHRRTHFPSPLSADHHLLQNSANI SSTLSSSSHNLQAADISISSTVSQPDQCSSGRIFVYNLPAVFNKELLDNCAKLDPWHS RCEALSNDGFGRKATGLSGIIPKDLLPAWYWTDQFAMEIIYHNRVLNHKCRTMEPDSA TAFYIPFYAGLAVGKHLWFNYSSKDRDRYCEMILSWVQDQPYWNSSNGWDHFMTMGRI TWDFRRSKNEEWGSRCIYMPGMRNITRLLIERNPWDYFDVGVPYPTGFHPRTDSDVLQ WQDFVRNRDRKTLFSFAGAPRGAVKNDFRGLLLSHCKNASGLCQAINCASTRCSNGSS AILETFLDSDFCLQPRGDSFTRRSIFDCMVAGSIPVFFWHRTAYLQYQWFLPSDPKSY SVFIHRNEVKNGTSIKSVLESYSREEVKIMREKVIEYIPKLVYAEPRKGLESIKDAFD VAIDGVLNRIEEQEQPGYKWK" gene 25701048..25714008 /locus_tag="TCM_015015" /note="dbxref CacaoGD:Thecc1EG015015" mRNA join(25701048..25701222,25703018..25703861, 25704167..25704290,25705561..25705619,25705740..25705847, 25706686..25706953,25709090..25709550,25709950..25710084, 25710182..25710322,25710444..25710555,25710754..25710824, 25710972..25711126,25711238..25711349,25711447..25711548, 25711633..25711693,25711775..25711943,25712022..25712118, 25712265..25712359,25712852..25712985,25713335..25714008) /locus_tag="TCM_015015" /product="DEAD-box ATP-dependent RNA helicase 7" /inference="alignment:exonerate- protein:2:ricco:30147.m014158" /inference="similar to AA sequence:ricco:30147.m014158" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6886t4" CDS join(25703289..25703861,25704167..25704290, 25705561..25705619,25705740..25705847,25706686..25706953, 25709090..25709550,25709950..25710084,25710182..25710322, 25710444..25710555,25710754..25710824,25710972..25711126, 25711238..25711349,25711447..25711548,25711633..25711693, 25711775..25711943,25712022..25712118,25712265..25712359, 25712852..25712985,25713335..25713591) /locus_tag="TCM_015015" /note="dbxref ricco:30147.m014158" /codon_start=1 /product="DEAD-box ATP-dependent RNA helicase 7" /protein_id="EOY22996.1" /db_xref="TAIR:AT5G62190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39189" /translation="MPAMRNITRLLIEKNPWDYCDIGVPYPTGFHPRSVSDILQWQNY VRRQNREKLFCFAGGTRWKIKNDFRGILLSHCQSESGSCQVIDCAGSRCAGGKGNTAV LKAFLGSDFCLQPRGDSYTRRSVFDCMVAGSIPVFFWKRTAYDQYEWFLPSEPESFSV YIDHEKVKMGTSTQGMLEKYSREEARRMREKDKTEHFPSCFSEVGDKGVEFGLRPFAL ECFSLGRRAGLDHPSESISQKPQAFESFNVSYIQNLGSCSYSVVISTSCSSTSYTRDQ ISIAFGDAYGNQIYVPRLDDPSTRTFEQCSSDTFEIYGPCAYQICYVYLYRSGPDGWK PESVKIYGYNSRAVTFYYDTFIPGDIWYGFNYCNTASSSHRQIALSDLKAKKEEKKMK KKIALETPETEKKMQKLKEPRLKEEDNDSELKKSRKKRKASELQLEEEERSETSSELV EPVNGKENKKRKKPKVEEEEEEEEDEGKSEDPNAISRFRISEAVREKLKSKGIESLFP IQAMTFDIVLDGTDLVGRARTGQGKTLAFVLPILESLTNGPAKTSRKTGYGRAPSVLV LLPTRELAKQVFDDFEVYGEVLGLTSCCLYGGAPYHSQEMKLKRGVDIVVGTPGRVKD HIERRNIDLGSLQFRILDEADEMLRMGFVDDVELILGKVEDASKVQTLLFSATLPDWV KGIAARFLKASKKTVDLVGNEKMKASTNVRHIVLPCSKSARSQLIPDIIRCYSSGGRT IIFTETKDSASELAGLLPGSRALHGDIQQAQREVTLNGFRSGKFLTLVATNVAARGLD INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPKRSNISKIERESGVKFE HISAPQPVDIAKFAGVEAAKIITQVSDSVIPAFKSVAQELLETSGLSAEDLLAKALAK AAGYSEIKSRSLLTSMENHVTLLLEAGKPIYTLSFVFGVLKRFLPEEKVQSVQGMTLT ADGMGAVFDVAEEDVETFLAGAENAANVSLEVLKKELPRLQERDQSRGRSGGGRGGFG DRNGGGGRYSGGGGRFSGGKGGRGGFSDRRFSNGSSGGRGRYNSKKW" mobile_element complement(25704901..25705110) /note="source:CACAO_PIF_E119_scaffold_3 4399 4615" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25707802..25707931 /note="source:CACAO_LINE_E_182_scaffold_7 2 143" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 25707906..25708226 /note="source:CACAO_LINE_E_78_scaffold_2 156 478" /mobile_element_type="retrotransposon:LINE/L1" gene 25714062..25718058 /locus_tag="TCM_015016" /note="dbxref CacaoGD:Thecc1EG015016" mRNA join(25714062..25715499,25715582..25715730, 25717456..25717913) /locus_tag="TCM_015016" /product="Peptidase family M48 family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s14180.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14180.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06014t00001" mRNA join(25714306..25715499,25715582..25715730, 25717456..25717779,25717862..25718058) /locus_tag="TCM_015016" /product="Peptidase family M48 family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s14180.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14180.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1071t1; alternateUTRof:Thecc1EG015016t1; inference alignment:Newbler:10:TSA:cgbaB_g06014t00001" CDS join(25714567..25715499,25715582..25715730, 25717456..25717705) /locus_tag="TCM_015016" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Peptidase family M48 family protein, putative isoform 1" /protein_id="EOY22997.1" /db_xref="Phytozome:POPTR_0012s14180.1" /db_xref="TAIR:AT5G51740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLI5" /translation="MACCRRAKFALNTLRNSFSSRPILKSPIQDSSSLISQSLGSSIS SANRAKFSAFSSHSSISQRPGISSKYQYNPFLNGAKRFYYVDRYHVQHFKRRGPLRWF QNPRNVLIFVLVGSGVLITVYSGNLETVPYTKRKHFILLSKETEKRMGEAQFKQLMAN FKGKILPPLHPESVRVRLIAKNIVDALKKGLNHDQIWSDLVYESPGSSFGHESGHETM APLNEKEGESGVNWSREDEILDDKWVQQSRKENQQRGSQPTMSHLEGLAWELMVINEP VVNAFCLPGGKIVVFTGLLEHFKTDAELATIIAHEVAHAVARHVAEQITKNLWFTILQ LILYQFFMPDLVNTMSALLLRLPFSRKMEIEADYIGLLLMASAGYDPRLAPKVFEKLG KIGGSSALEDYLSTHPSSKKRAQLLAQAQVMEEAITIYREAIAGRGVEGFL" CDS join(25714567..25715499,25715582..25715730, 25717456..25717705) /locus_tag="TCM_015016" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Peptidase family M48 family protein, putative isoform 1" /protein_id="EOY22998.1" /db_xref="Phytozome:POPTR_0012s14180.1" /db_xref="TAIR:AT5G51740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLI5" /translation="MACCRRAKFALNTLRNSFSSRPILKSPIQDSSSLISQSLGSSIS SANRAKFSAFSSHSSISQRPGISSKYQYNPFLNGAKRFYYVDRYHVQHFKRRGPLRWF QNPRNVLIFVLVGSGVLITVYSGNLETVPYTKRKHFILLSKETEKRMGEAQFKQLMAN FKGKILPPLHPESVRVRLIAKNIVDALKKGLNHDQIWSDLVYESPGSSFGHESGHETM APLNEKEGESGVNWSREDEILDDKWVQQSRKENQQRGSQPTMSHLEGLAWELMVINEP VVNAFCLPGGKIVVFTGLLEHFKTDAELATIIAHEVAHAVARHVAEQITKNLWFTILQ LILYQFFMPDLVNTMSALLLRLPFSRKMEIEADYIGLLLMASAGYDPRLAPKVFEKLG KIGGSSALEDYLSTHPSSKKRAQLLAQAQVMEEAITIYREAIAGRGVEGFL" gene 25718498..25727628 /locus_tag="TCM_015017" /note="dbxref CacaoGD:Thecc1EG015017" mRNA join(25718498..25720116,25720229..25720530) /locus_tag="TCM_015017" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g31190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015020t1" /inference="similar to AA sequence:Phytozome:Glyma09g31190.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1631t1" CDS 25718566..25719969 /locus_tag="TCM_015017" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015020t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY22999.1" /db_xref="Phytozome:Glyma09g31190.1" /db_xref="TAIR:AT5G66520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9L3" /translation="MIRAYASKICDTNDGAPFLPSLLLFKQMLFNGISPDCLTFPFLL KECTRRFDSRVGCSIHGKTIKFGWFRDLYVQNSLVNFYSACGFLNSARKLFDEMLNRD VVSWNSMIIGHLRAGNLDMALKLFRSIEKRNIITWNSMITGFVQGGLGKEALQLFHEM QNLSNDNVKPDKITMASVLSACAYLGAIDHGKWIHSYLRRSGVECDLVVGTALIDMYG KCGSVERAYEVFKEMPRRDTLAWTAMISAFALHGYSKEAFDTFVEMEAVGVKPNHVTF VSLLSACVHSGLVEKGRWCFDMMRRVYSIEPQLHHYACMVDVLSRAGLFEEVESLVRS MPMEPDVFVWGALLGGCQIHGNIELGERVAQYLIDLEPMNHAFYINLCDIYAKAGRFD DVKRIRALMKERGIRKEVAGCSMIEVDGFVLEFSIKGCPELVMDEIVVILNLLKNEIK GEGSVHYCDGILLDAQN" mRNA join(25718807..25720438,25720853..25720876) /locus_tag="TCM_015017" /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g31190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015020t1" /inference="similar to AA sequence:Phytozome:Glyma09g31190.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3404t1; alternateUTRof:Thecc1EG015017t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1631t1" mRNA join(25718847..25720116,25720268..25720438, 25727604..25727628) /locus_tag="TCM_015017" /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g31190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015020t1" /inference="similar to AA sequence:Phytozome:Glyma09g31190.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6562t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1631t1" CDS 25718857..25719969 /locus_tag="TCM_015017" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015020t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /protein_id="EOY23000.1" /db_xref="Phytozome:Glyma09g31190.1" /db_xref="TAIR:AT5G66520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJY7" /translation="MLNRDVVSWNSMIIGHLRAGNLDMALKLFRSIEKRNIITWNSMI TGFVQGGLGKEALQLFHEMQNLSNDNVKPDKITMASVLSACAYLGAIDHGKWIHSYLR RSGVECDLVVGTALIDMYGKCGSVERAYEVFKEMPRRDTLAWTAMISAFALHGYSKEA FDTFVEMEAVGVKPNHVTFVSLLSACVHSGLVEKGRWCFDMMRRVYSIEPQLHHYACM VDVLSRAGLFEEVESLVRSMPMEPDVFVWGALLGGCQIHGNIELGERVAQYLIDLEPM NHAFYINLCDIYAKAGRFDDVKRIRALMKERGIRKEVAGCSMIEVDGFVLEFSIKGCP ELVMDEIVVILNLLKNEIKGEGSVHYCDGILLDAQN" CDS 25718857..25719969 /locus_tag="TCM_015017" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015020t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /protein_id="EOY23001.1" /db_xref="Phytozome:Glyma09g31190.1" /db_xref="TAIR:AT5G66520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJY7" /translation="MLNRDVVSWNSMIIGHLRAGNLDMALKLFRSIEKRNIITWNSMI TGFVQGGLGKEALQLFHEMQNLSNDNVKPDKITMASVLSACAYLGAIDHGKWIHSYLR RSGVECDLVVGTALIDMYGKCGSVERAYEVFKEMPRRDTLAWTAMISAFALHGYSKEA FDTFVEMEAVGVKPNHVTFVSLLSACVHSGLVEKGRWCFDMMRRVYSIEPQLHHYACM VDVLSRAGLFEEVESLVRSMPMEPDVFVWGALLGGCQIHGNIELGERVAQYLIDLEPM NHAFYINLCDIYAKAGRFDDVKRIRALMKERGIRKEVAGCSMIEVDGFVLEFSIKGCP ELVMDEIVVILNLLKNEIKGEGSVHYCDGILLDAQN" gene 25720264..25729731 /locus_tag="TCM_015018" /note="dbxref CacaoGD:Thecc1EG015018" mRNA join(25720264..25720438,25720853..25721061, 25721145..25721357,25721746..25722030,25722115..25722450, 25722696..25722896,25722980..25723334) /locus_tag="TCM_015018" /product="Cytochrome P450, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s06770.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015020t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018473001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1563t6_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1563t6_C1" mRNA join(25720265..25720438,25720853..25721061, 25721145..25721357,25721746..25722030,25722115..25722450, 25722696..25722896,25722980..25723355,25729601..25729731) /locus_tag="TCM_015018" /product="Cytochrome P450, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s06770.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015020t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018473001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2066t4_C1; alternateUTRof:Thecc1EG015018t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1563t6_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1631t4_C2" CDS join(25720894..25721061,25721145..25721357, 25721746..25722030,25722115..25722429) /locus_tag="TCM_015018" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015020t1" /codon_start=1 /product="Cytochrome P450, putative isoform 1" /protein_id="EOY23002.1" /db_xref="Phytozome:GSVIVT01018473001" /db_xref="TAIR:AT2G45510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NKS6" /translation="MLHQLVHFNGLFDYQTSLAKKHSTYRLIMPLRSEIYTADPVNIE HILKTNFPNYGRGAIAEILRDLFGDGIFAVDGEKWRHQRKLASHEFSTKVLREYSTAV FQDNAAKLVSKVSIIGAARHAMDLQDMFMKSTLDSIFKVGFGVELNALSGSDEFGNQF TKAFDDSNVIVYWRFVDPFWKVKRLLNIGLEAALKRNVKIIDDFIFELVRCKREQMKN EKLVRDKEDILSRFLMESEKDSENMTDQYLRDIILNFMIAGKDTSANTLTWFFYMLCK YPLVQKKVVQEVIESTQAEDKICADEFSRLMTEQALDRMQYLHAALTETL" CDS join(25720894..25721061,25721145..25721357, 25721746..25722030,25722115..25722429) /locus_tag="TCM_015018" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015020t1" /codon_start=1 /product="Cytochrome P450, putative isoform 1" /protein_id="EOY23003.1" /db_xref="Phytozome:GSVIVT01018473001" /db_xref="TAIR:AT2G45510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NKS6" /translation="MLHQLVHFNGLFDYQTSLAKKHSTYRLIMPLRSEIYTADPVNIE HILKTNFPNYGRGAIAEILRDLFGDGIFAVDGEKWRHQRKLASHEFSTKVLREYSTAV FQDNAAKLVSKVSIIGAARHAMDLQDMFMKSTLDSIFKVGFGVELNALSGSDEFGNQF TKAFDDSNVIVYWRFVDPFWKVKRLLNIGLEAALKRNVKIIDDFIFELVRCKREQMKN EKLVRDKEDILSRFLMESEKDSENMTDQYLRDIILNFMIAGKDTSANTLTWFFYMLCK YPLVQKKVVQEVIESTQAEDKICADEFSRLMTEQALDRMQYLHAALTETL" gene 25722397..25723334 /locus_tag="TCM_015019" /note="dbxref CacaoGD:Thecc1EG015019" mRNA join(25722397..25722450,25722696..25722896, 25722980..25723334) /locus_tag="TCM_015019" /product="Cytochrome P450, family 704, subfamily A, polypeptide 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s06770.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015020t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018473001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1563t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1563t4" mRNA join(25722515..25722896,25722980..25723334) /locus_tag="TCM_015019" /product="Cytochrome P450, family 704, subfamily A, polypeptide 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s06770.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015020t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018473001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1563t4; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1563t4" CDS join(25722651..25722896,25722980..25723159) /locus_tag="TCM_015019" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015020t1" /codon_start=1 /product="Cytochrome P450, family 704, subfamily A, polypeptide 2 isoform 1" /protein_id="EOY23004.1" /db_xref="Phytozome:GSVIVT01018473001" /db_xref="TAIR:AT2G45510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q658G9" /translation="MSLETKKSSSLFLMQDGKSAAEDDVLPDGFKVKKGDGVTYMAYA MGRMTYIWGEDAEEYRPERWLENGIFQPESPFKFAAFQAGPRICLGKEFAYRQMKILA AVLLYFQFRLVDETKEATYRTMFTLHMAGGLNVFAFPRA" CDS join(25722771..25722896,25722980..25723159) /locus_tag="TCM_015019" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015020t1" /codon_start=1 /product="Cytochrome P450, family 704, subfamily A, polypeptide 2 isoform 2" /protein_id="EOY23005.1" /db_xref="Phytozome:GSVIVT01018473001" /db_xref="TAIR:AT2G45510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q658G9" /translation="MAYAMGRMTYIWGEDAEEYRPERWLENGIFQPESPFKFAAFQAG PRICLGKEFAYRQMKILAAVLLYFQFRLVDETKEATYRTMFTLHMAGGLNVFAFPRA" mobile_element 25723223..25723278 /note="source:scaffold_2_CACTA_0259 18534 18590" /mobile_element_type="transposon:TIR/CACTA" gene 25725611..25731650 /locus_tag="TCM_015020" /note="dbxref CacaoGD:Thecc1EG015020" mRNA join(25725611..25726672,25727604..25727812, 25727896..25728108,25728496..25728780,25728865..25729200, 25729424..25729624,25729708..25730057,25731488..25731650) /locus_tag="TCM_015020" /product="Cytochrome P450 704C1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018473001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015018t2" /inference="similar to AA sequence:Phytozome:GSVIVT01018473001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6566t5" CDS join(25725793..25726672,25727604..25727812, 25727896..25728108,25728496..25728780,25728865..25729200, 25729424..25729624,25729708..25729890) /locus_tag="TCM_015020" /note="paralog of Thecc1EG015018t2" /codon_start=1 /product="Cytochrome P450 704C1" /protein_id="EOY23006.1" /db_xref="Phytozome:GSVIVT01018473001" /db_xref="TAIR:AT2G45510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q658G9" /translation="MQNLSNDNVKPDKITMASVLSACAYLGAIDHGKWIHSYLRRSGV ECDLVVGTALIDMYGKCGSVERAYEVFKEMPRRDTLAWTAMISAFALHGYSKEAFDTF VEMEAVGVNPNHVTFVSLLSACVHSGLVEKGRWCFDMMRRVYSIEPQLHHYACMVDVL SRAGLIEEVENLVRSMPMKPDVFVWDALLGGCQIHGNIELGERVAQYLIDLEPMNHAF YIDLCDIYAKAGRFDDVKRIRALMKERGIRKEVAGCRMIEVDEFVLEFSLKGWPELVM DEIVVILNLLKNEIKGEELISKDKRPPVAGLMLHQLVHFNGLFDYQTSLAKKHSTYRL IMPLRSEIYTADPVNIEHILKTNFPNYGRGARAVILRDLFGDGIFAVDGEKWRHQRKL ASHEFSTKVLREYSTAVFQDNAAKLVSKVSIMGAARHAMDLQDMFMKSTLDSIFKVGF GVELNALSGSDEFGNQFTKAFDDSNVIVYWRFVDPFWKVKRLLNIGLEAALKRNVKII DDFIFELVRCKREQMKNEKLVRDREDILSRFLMESEKDPENMTDQYLRDIILNFMIAG KDTSANTLTWFFYMLCKHPLVQKKVVQEVIESTQAEDKICADEFSRLMTEQALDRMQY LHAALTETLRLYPAVPADGKRAAEDDVLPDGFKVKKGDGVTYMAYAMGRMTYIWGEDA DEYRPERWLENGIFQPESPFKFTAFQAGPRICLGKEFAYRQMKILAAVLLYFFQFRLV DETKEATYRTMFTLHMAEGLNVYAFPRA" gene complement(25732875..25735683) /locus_tag="TCM_015021" /note="dbxref CacaoGD:Thecc1EG015021" mRNA complement(join(25732875..25734084,25734534..25734773, 25734932..25735683)) /locus_tag="TCM_015021" /product="Alpha-L-fucosidase 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014155" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042148t1" /inference="similar to AA sequence:ricco:30147.m014155" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12108t00001" CDS complement(join(25733400..25734084,25734534..25734773, 25734932..25735476)) /locus_tag="TCM_015021" /note="dbxref ricco:30147.m014155; paralog of Thecc1EG042148t1" /codon_start=1 /product="Alpha-L-fucosidase 1" /protein_id="EOY23007.1" /db_xref="TAIR:AT2G28100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAR2" /translation="MAKFWCSLCIIIILQLSKLAISRREEVPTPPLPVLPLPTFSQLK WQQRELIMFLHFGVNTFTDSEWGTGKENPAIFNPAGLDAKQWVTTAAEAGISLMILTA KHHDGFCLWPSRYTDHSVVSSPWKNGHGDVVQEFVSAVKAHGGIDAGLYLSPWDRHDR RYGQDLQYNEYYLAQLQELLIEYGSVKEIWFDGAKGKNAKNMSYYFTDWFAMVRELQS SINIFSDAGPDVRWVGNERGFAGNTSWSTINSTSLSIGNASIIDYLNTGDPKGTNWLP AECDVSIRKGWFWHKSESPKKLSELLEIYYNSVGRNCVMLLNVPPNSTGLISETDVQR LKQFRSAIDTIFSTNLAEKCFIKASSQRGGKGGGFGPENVLDSDHLWTYWAPRDDGHK KEHWIEIRVQNEGLRFNVVRIQEAIGLGQRIVRHEIFVDGKKLVEGTTVGHKRLHRLE EVHGRVVRIVVKESRGLPLISSIGLHFDPYWNPNEQLLF" mobile_element complement(25737338..25737434) /note="source:scaffold_6_CACTA_0699 9525 9621" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25737477..25737899 /note="source:CACAO_on_E717_scaffold_9 1 421" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 25738009..25740585 /locus_tag="TCM_015022" /note="dbxref CacaoGD:Thecc1EG015022" mRNA 25738009..25740585 /locus_tag="TCM_015022" /product="3-ketoacyl-CoA synthase 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009924t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14120.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS 25738178..25739677 /locus_tag="TCM_015022" /note="paralog of Thecc1EG009924t1" /codon_start=1 /product="3-ketoacyl-CoA synthase 6" /protein_id="EOY23008.1" /db_xref="Phytozome:POPTR_0015s14120.1" /db_xref="TAIR:AT1G68530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAM1" /translation="MDPLPLPELKQDSVSNTIGIFLSTVLSKHLYSIPLELLPFSTLI LAFMSLEGLFVFHKWEPIFHVLLLFSFLLLFLLGVGPFAFKPSSVYLVDFSCFKPPNC CKVPFSHFTEHASMIESFDSESVEFMAKILASSGLSEDTYLPPALHCIPPKTHQREYV KEAEMVLFPLMDDLLSKAKLSPRDIDILIINCSGFCPSPSLSSIIVNKYSMRSDVKSY SLSGMGCSAGAIGIDLAQNLLKTNRNSIAIVLSTEILSAGWYSGRERSMLLLNCLFRM GSAAVLLTNKKEASKSSKYKLLRTLRTQTAFEDKAYLTVIREEDTGGKLGVTINKDLL QAAGEILRSHITILGSQILPFKAKLRHAISIIRMKFIKKSGKIYMPSFKTAIQHFCLP TSGRAVIREIAKALKLDERDIEAALMTLHRFGNQSSSSMWYELAYMEAKERVKEGDKV WLLGMGTGPKCNSFGLECVRPIVGESKKNPWSDCINLYPIEAVPSKSPT" gene 25743501..25744479 /locus_tag="TCM_015023" /note="dbxref CacaoGD:Thecc1EG015023" mRNA 25743501..25744479 /locus_tag="TCM_015023" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.24 coverage" CDS 25743905..25744117 /locus_tag="TCM_015023" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23009.1" /translation="MIDDNMKSRRNGHVVMTTIGLIGFLSIEKPSPPRPDPLTFEPYI HSTTPNFCALIDSKRPQQEFNERRWE" mobile_element complement(25744798..25744921) /note="source:CACAO_on_E33_A_scaffold_3 14 136" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25744817..25746226 /note="source:CACAO_Again_on_E108_scaffold_4 29 1736" /mobile_element_type="transposon:TIR/hAT" gene complement(25746689..25747749) /locus_tag="TCM_015024" /note="dbxref CacaoGD:Thecc1EG015024" mRNA complement(join(25746689..25747640,25747721..25747749)) /locus_tag="TCM_015024" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc207t4" gene 25746880..25750071 /locus_tag="TCM_015025" /note="dbxref CacaoGD:Thecc1EG015025" mRNA 25746880..25750071 /locus_tag="TCM_015025" /product="Subtilase 1.3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000749t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14110.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01803t00001" CDS complement(25747206..25747421) /locus_tag="TCM_015024" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23010.1" /translation="MRRFVELVLLRLEISEGREGPFLCLLMVVIKVVGDSLNASWMEL GNLTGEVVEVKAGYGPCAREGSHSLGN" CDS 25747478..25749814 /locus_tag="TCM_015025" /note="paralog of Thecc1EG000749t1" /codon_start=1 /product="Subtilase 1.3" /protein_id="EOY23011.1" /db_xref="Phytozome:POPTR_0015s14110.1" /db_xref="TAIR:AT5G51750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65351" /translation="MTENPVKWLFLILTSCLSFALVLSASNPLIKKTFIVQMDKSAMP ASFSSHLEWYSSKVKSVIMSNTQSEGDGDGERIIYSYQNAFHGVAAQLTEDEAERLEE EDGVVAILPEMKYQLHTTRSPMFLGLEPEESTSIWSQKLTDHDVIVGVLDTGIWPESE SFNDTGLAPVPAHWKGACETGRGFEKHHCNRKIVGARVFYRGYEAATGKINEKNEYKS PRDQDGHGTHTAATVAGSPVRGANLLGYAYGTARGMAPGARIAAYKVCWTGGCFSSDI LSAVDRAVADGVSVLSISLGGGVSSYYRDSLAIATFGAMEMGVFVSCSAGNGGPDPVS LTNVSPWITTVGASTMDRDFPADVKLGTGRTLTGVSLYKGQRFLSPNKQYPIVYMGSN SSSPDPSSLCLEGTLDPHIVSGKIVICDRGISPRVQKGQVVKDAGGIGMILTNTAANG EELVADCHLLPALAVGEMEGKAIKHYALTSRKATATLAFLGTRLGIRPSPVVAAFSSR GPNFLTFEILKPDMVAPGVNILAAWTGELGPSSLQTDHRRVKFNILSGTSMSCPHVSG IAALLKARHPEWSPAAIKSALMTTAYVHDNTHNPLKDAAEAAISTPYDHGAGHINPLK ALDPGLVYDIEAQDYFEFLCTQKLTTMQLKVFGKYSNRFCHHTLASAGDLNYPAISVV FPEDTTAISVLTLHRTVTNVGPPISNYHVVVSQFKGATVKVDPKSLNFTRKNQKLSYK ITFTTKSPQTVPEFGGLVWKDGVHKVRSPIVITWIPPM" gene complement(25750170..25761926) /locus_tag="TCM_015026" /note="dbxref CacaoGD:Thecc1EG015026" mRNA complement(join(25750170..25750751,25753719..25753880, 25754307..25754371,25754489..25754640,25761416..25761926)) /locus_tag="TCM_015026" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6845t1" CDS complement(join(25750733..25750751,25753719..25753880, 25754307..25754371,25754489..25754640,25761416..25761452)) /locus_tag="TCM_015026" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23012.1" /translation="MWRKQRITTKEKGESFIIRNNHGEIMLVGLNTYKKAVSIVEAKI KALSGTLSICDQQQLRIDEVRHCSREENKVAHTIAQHVKCSLTLTVSVVCLPRRNKRG TRLIQEFSSIWPQKRVLICSFKPRFVSSSLQSIDAIRIIRIS" mRNA complement(join(25751675..25751874,25753719..25753880, 25754307..25754371,25754489..25754640,25761416..25761926)) /locus_tag="TCM_015026" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b014511t1a2" CDS complement(join(25751799..25751874,25753719..25753880, 25754307..25754371,25754489..25754640,25761416..25761452)) /locus_tag="TCM_015026" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY23013.1" /translation="MWRKQRITTKEKGESFIIRNNHGEIMLVGLNTYKKAVSIVEAKI KALSGTLSICDQQQLRIDEVRHCSREENKVAHTIAQHVKCSLTLTVSVVCLPRRNKRG TRLIQEFSSIWPQKRVLICSFKPRFVSSSLQSIDAISGNRLLRQTLGNLVLLLMSSPQ QVP" mobile_element complement(25754109..25754173) /note="source:CACAO_Mariner_E176_scaffold_6 2821 2886" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(25754113..25754184) /note="source:CACAO_on_E33_A_scaffold_3 671 742" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25756601..25758004 /note="source:scaffold_4_CACTA_0482 4495 5901" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25758001..25758625) /note="source:scaffold_1_CACTA_0008 9680 10306" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25758733..25759258 /note="source:CACAO_Again_on_S_E120_scaffold_3 1 526" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(25759366..25759591) /note="source:INTACT44_F119_scaffold_6-int 6266 6486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25762578..25762915 /note="source:scaffold_3_CACTA_0378 1 341" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25762806..25762999) /note="source:scaffold_9_CACTA_0945 4301 4521" /mobile_element_type="transposon:TIR/CACTA" gene complement(25762858..25764555) /locus_tag="TCM_015027" /note="dbxref CacaoGD:Thecc1EG015027" mRNA complement(join(25762858..25763403,25763709..25763794, 25763878..25763906,25763968..25764555)) /locus_tag="TCM_015027" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009522t1" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.59 coverage" mobile_element 25762988..25763264 /note="source:scaffold_4_CACTA_0498 389 665" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(25763320..25763403,25763709..25763794, 25763878..25763906,25763968..25763981)) /locus_tag="TCM_015027" /note="paralog of Thecc1EG009522t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23014.1" /translation="MKLAFLFIWEERVEGTQPLKGEGQESSFILGFTSNTPQRNSLKV WKFDPAHQRWLPVADMAASSRVGFAW" mobile_element 25764365..25764448 /note="source:INTACT405F_F91_scaffold_4-int 15498 15586" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25764624..25764845) /note="source:CACAO_on_SS_E135_scaffold_10 4963 5200" /mobile_element_type="transposon:TIR/Mutator" mobile_element 25764655..25765501 /note="source:scaffold_3_CACTA_0378 1664 2511" /mobile_element_type="transposon:TIR/CACTA" gene 25766756..25770634 /locus_tag="TCM_015028" /note="dbxref CacaoGD:Thecc1EG015028" mRNA join(25766756..25767492,25767706..25768068, 25768527..25768632,25770076..25770634) /locus_tag="TCM_015028" /product="Phosphatase 2C family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G51760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015029t1" /inference="similar to AA sequence:ricco:30147.m014150" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05886t00001" CDS join(25767040..25767492,25767706..25768068, 25768527..25768632,25770076..25770419) /locus_tag="TCM_015028" /note="dbxref ricco:30147.m014150; paralog of Thecc1EG015029t1" /codon_start=1 /product="Phosphatase 2C family protein, putative" /protein_id="EOY23015.1" /db_xref="TAIR:AT5G51760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4H7" /translation="MTEVYRRMLSEDDDDSPAKCRQRRRRRIQMRRLGAISVSSTAAF PSQRQREDHAESSGCFPEAKRLRMGEASGLLATVTMCTFSGEEVEPTAGERKVTMTNG PVFGTMSISGRSREMEDAISVRTSFCRPDVNLKRPVHFFAVYDGHGGPHVAALCREKM HVFVEEELMGVKCSGESECGRDSSSQEDEHEESWRRVMKRSFERMDEVAISTCACGIV GHQCGCHSMEVALGGSTAVVALLTSEHIVVANCGDSRAVLCRGGKAVPLSVDHKPDRS DELARIEAAGGRVVFVNGARVEGILAMSRAIGDKYLKPVVTSEPEITFTKREPEDECL ILASDGLWDVLSCDLACEVARECLKEGSNSATASALNLNAGPNKEDEGAETLYPSRSV LAAALLTRLALGRKSSDNISVIVVDLNES" gene 25771411..25778011 /locus_tag="TCM_015029" /note="dbxref CacaoGD:Thecc1EG015029" mRNA join(25771411..25772464,25772579..25773004, 25773221..25773326,25777289..25778011) /locus_tag="TCM_015029" /product="Phosphatase 2C family protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G51760.1.2" /inference="similar to AA sequence:ricco:30147.m014150" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00234t00002" CDS join(25771802..25772464,25772579..25773004, 25773221..25773326,25777289..25777641) /locus_tag="TCM_015029" /note="dbxref ricco:30147.m014150" /codon_start=1 /product="Phosphatase 2C family protein" /protein_id="EOY23016.1" /db_xref="TAIR:AT5G51760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4H7" /translation="MSIAPCIAFPWRFANHPLLPRVTKPTFFTHANQLCQPFFSSFFL FFLSFLNFLSIILSSFSLSMAPPSELLLKIFSDDLENETPEKCRERRRRRIQLRRSRY TFAPIQQLQSPPPRKEMTNYVPTTDQYFALLNRTTLGDKTTAMALPVVVDSSWTSLTS ASCGAKTDVNPMPVNGWISIQGFSDSMDDRLFVKEEFCRSDLFGGKPLHFFAVYDGHG GPHVSTLCKNMMHTIMAEELMRLSTEKAPATSDGGGSSSGNGTGSSSPAERIKNAEVG GVEEWENLVRAALEKSFLRMDEVALSTCACGKSAYLGGCQAVDVGFLGSTAVVAIVAP HHVVVANCGDSRAVLCRAGRAIPLSLDHKPERPDELERIRAAGGKLVYQNGVRVYGIL NMSRALGDNFLKKVITSQPETSITERDPEDECLILATDGLWDVMSDALACEVASTCLR DGSCATSPRSHYSGQSVKIDGEVLFPSKSAFAAAILCRLALGRGSCDNISVIVVDLKK HLAGKAK" mobile_element complement(25774303..25775408) /note="source:CACAO_PIF_E144_scaffold_10 1225 2392" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25776641..25776724 /note="source:scaffold_4_CACTA_0482 7643 7726" /mobile_element_type="transposon:TIR/CACTA" gene 25778263..25778804 /locus_tag="TCM_015030" /note="dbxref CacaoGD:Thecc1EG015030" mRNA join(25778263..25778534,25778594..25778804) /locus_tag="TCM_015030" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma09g27660.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03006t00001" CDS join(25778389..25778534,25778594..25778762) /locus_tag="TCM_015030" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23017.1" /db_xref="Phytozome:Glyma09g27660.1" /translation="MSSQLLGPTKIELFILFCSLCVVVSLAFKLNSFMGWNPHLPSSV SSPFRGGYTVLINTWKRKSLLKNSVAHCSSCGGSDAIRVLWSETHPPSEAEFQVRDKR GR" gene 25778858..25781012 /locus_tag="TCM_015031" /note="dbxref CacaoGD:Thecc1EG015031" mRNA join(25778858..25778934,25779027..25779127, 25779261..25779344,25780917..25781012) /locus_tag="TCM_015031" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1727t9" CDS join(25779031..25779127,25779261..25779344, 25780917..25780975) /locus_tag="TCM_015031" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23018.1" /translation="MGLQIINMEDGGQFGGWVVIAWFFQKQLSITKSSHIEIVKTLQC PCWSPMPLLLLQIWVKGKVYEIGSSGIKQSKRASC" gene 25783420..25787625 /locus_tag="TCM_015032" /note="dbxref CacaoGD:Thecc1EG015032" mRNA join(25783420..25786050,25787355..25787625) /locus_tag="TCM_015032" /product="LRR receptor-like serine/threonine-protein kinase RFK1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005470t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14080.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04485t00001" CDS 25784004..25786049 /locus_tag="TCM_015032" /note="paralog of Thecc1EG005470t1" /codon_start=1 /product="LRR receptor-like serine/threonine-protein kinase RFK1, putative" /protein_id="EOY23019.1" /db_xref="Phytozome:POPTR_0015s14080.1" /db_xref="TAIR:AT4G25390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICZ2" /translation="MPRTIPPLPPPQQQPPLIYHERPLPTRLIFPPVAAVTAAFSIFL VLSVCLRKIRRERTAPADSKPPHRFSYSILRRATCSFSASRRLGQGGFGSVYRACLPN NKENNKNNNNQTVAVKVMDAGSLQGEREFQNELFFASKLDSSLVVSVLGFSYDRKRRR MLLVYELMPNGNLQDGLLHRKCPELMDWKQRFLIAVDIAKGLEYLHGLDPPVIHGDIK PSNILLDQYFSAKIADFGLARVKSEESKVEIGEDCGSVAETESVATAIEEFNLVADQS PGSVMESPENAEVVTVAVSPETVGVAAAMSPEMMEKGSVSEVNFDRASVESGKELGNG GKRSGKGLRSGSGRDWWWKQDNGAVAESGKVKDYVMEWIGTEIKKEKPSSDWIASVAS SSSELNAKLEKNKKKKSRKRLEWWVSMEDDKERNVKKEKRRPAREWWKEEYCEELAKK NKKKKKRQLGMYHSDDNGGGENWWPVDDELFTEKKKKKSKRSRSRGSVGSVDWLWDGL SGELWRARRNSYDSFSGEITKSGGMSSTPSMRGTVCYIAPEYGGGGDLSEKVDVYSFG VLLLVLIAGRRPLQVTGSPMSEFQRANLTSWARHLARTGKLLDLVDQSIQSLNREQAL LCITVALLCLQKSPASRPSMKEVVEMLTGEAEPPQLPTEFSPSPPSRFPFKPRKKVR" mobile_element 25789201..25789271 /note="source:scaffold_3_CACTA_0377 2372 2443" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25789231..25789284 /note="source:INTACT415F_F22_scaffold_4-int 2205 2256" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25791056..25792956 /locus_tag="TCM_015033" /note="dbxref CacaoGD:Thecc1EG015033" mRNA join(25791056..25791454,25791793..25792122, 25792229..25792282,25792570..25792665,25792743..25792956) /locus_tag="TCM_015033" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s14080.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14080.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2247t1" CDS join(25791143..25791454,25791793..25792122, 25792229..25792282,25792570..25792665,25792743..25792778) /locus_tag="TCM_015033" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /protein_id="EOY23020.1" /db_xref="Phytozome:POPTR_0012s14080.1" /db_xref="TAIR:AT5G51790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICZ3" /translation="MFPLQQGDDLVYQIFFNSNQHKIPQDLITDHASLEGTPIPIIGS SMGKSQRRKVCHMESTSTQAFTCDKYKKQKLHREIERQRRQDMASLYASLRSLLPGEY IKGKRSMSDHMNEAVNYIKHLEKKVKDLDVKRDELKRVSNLAALGSGTESSNHCFIIR PCLIGIEIMFRCGFEEQGLPLSRVLAALVDEGLPVVSCISTKSEEYLLHTIQTEVNDP TSFNLSGLQQKLAKNCVASSCSPNETARVGCRQITWTVAICISTSTLGNDGQSCKNS" mobile_element complement(25794902..25794952) /note="source:CACAO_Helitron_S_E29_scaffold_3 7931 7987" /mobile_element_type="transposon:Helitron" mobile_element 25798728..25798835 /note="source:CACAO_hAT_E2547_scaffold_5 1 111" /mobile_element_type="transposon:TIR/hAT" mobile_element 25798736..25798910 /note="source:MITE_hAT_25 9 156" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(25798851..25798923) /note="source:CACAO_on_E195_scaffold_9 912 982" /mobile_element_type="transposon:TIR/hAT" mobile_element 25798916..25799801 /note="source:CACAO_on_E6_scaffold_1 2336 3200" /mobile_element_type="transposon:TIR/hAT" gene 25803879..25805283 /locus_tag="TCM_015034" /note="dbxref CacaoGD:Thecc1EG015034" mRNA join(25803879..25804182,25804350..25804748, 25804840..25805283) /locus_tag="TCM_015034" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT4G25410.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14070.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc8127t1" CDS join(25803895..25804182,25804350..25804748, 25804840..25804923) /locus_tag="TCM_015034" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /protein_id="EOY23021.1" /db_xref="Phytozome:POPTR_0015s14070.1" /db_xref="TAIR:AT4G25410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICZ3" /translation="MDQMFFQVSSNSDPQNTTPQDKNLDYVLPVDGTSNLHSNMRSRG QQRKLLASDKSENSNDDNKKKLMHRDIERQRRQEMATLYASLRTLLPLEYIKKLRSGF AIIMSLGLLFMGFQGKRAISDHMNGAVCYIKDLQKRIDELSAKRNELKKLSNSSCFDQ GMSSNDSFPSSAVVRQSLNGVEVVISTGLGAQALTLSRVLELLLEEGLDVVSCISTRI DGGLIHTIQSEVSDLTYVTVPGLQQKLNEEISSLSQIS" mobile_element complement(25808501..25808620) /note="source:scaffold_6_CACTA_0706 1383 1529" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25808534..25808632 /note="source:CACAO_M_E72142_F322_scaffold_10 732 832" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25808546..25808635 /note="source:scaffold_1_CACTA_0006 8437 8521" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25808636..25808662) /note="source:INTACT753_F322_scaffold_5-int 7983 8098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25809800..25810575) /note="source:scaffold_8_CACTA_0855 1940 2602" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25810591..25810688) /note="source:scaffold_4_CACTA_0506 2691 2788" /mobile_element_type="transposon:TIR/CACTA" gene 25813005..25814460 /locus_tag="TCM_015035" /note="dbxref CacaoGD:Thecc1EG015035" mRNA join(25813005..25813359,25813584..25813931, 25814080..25814460) /locus_tag="TCM_015035" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014145" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015033t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14080.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6603t1" CDS join(25813048..25813359,25813584..25813931, 25814080..25814151) /locus_tag="TCM_015035" /note="paralog of Thecc1EG015033t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /protein_id="EOY23022.1" /db_xref="Phytozome:POPTR_0012s14080.1" /db_xref="TAIR:AT5G51780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICZ3" /translation="MFPSHQSDDFLYEISDIPHYQDLMQQNLTISGEGSAGGSNLTQR MAKGKRHKKFVAAANSNDGNAAANNDAKKIMRKEIERQRRQQMAKLYGKLRSLLPLES IQGKRAVSDHMNEAVNYIKYLKKKIQELSVKRDKLKKLSNLSAFDQGSASSSDNSSLI NCVAVHPYRGGVEIVINSGFGDESWHLSAMMQAIRAEELDVVHCISSQTNEGFLHTIQ SEVSDPAHRLDLPGLQSKLNDLISF" gene 25817710..25826859 /locus_tag="TCM_015036" /note="dbxref CacaoGD:Thecc1EG015036" mRNA join(25817710..25818079,25818548..25818605, 25818696..25818850,25818944..25819223,25819520..25820500, 25826582..25826859) /locus_tag="TCM_015036" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014144" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038819t1" /inference="similar to AA sequence:ricco:30147.m014144" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete" CDS join(25817998..25818079,25818548..25818605, 25818696..25818850,25818944..25819223,25819520..25820153) /locus_tag="TCM_015036" /note="dbxref ricco:30147.m014144; paralog of Thecc1EG038819t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY23023.1" /db_xref="TAIR:AT1G52540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T1U3" /translation="MLHYAMVNQMDAPDVLIAVDRVNHLDVETMNWRCFLCCISQEKE EIRVKKSRDYPWEIYSIKELLHATNNFHNDNKIGEGGFGSVYRGHTSKGVEAIISNMV LQIAVKRLKAMSAKAEMEFAVEVEILGRVRHKNLLGLRGFYAGDDERLIVYDFMPNHS LITHLHGQLAADCLLDWPRRMSIAIGSAEGLAYLHHEVHPHIIHRDIKASNVLLDANF EAKVADFGFAKLIPDGVTHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEII SARKPLEKLPSGVKRDIVQWVTPYVQKGTFDHIADPRLKGKFDRAQLKSAVTIAIKCT DSNPENRPSMLEVVEWLKGGVGRIRKEVTNIEYMLEEEEDNDDTDTHFEGFRMAQSDT RRKWARSKRI" mobile_element complement(25820991..25821829) /note="source:scaffold_10_CACTA_0130 8721 9617" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25826243..25827253 /note="source:scaffold_10_CACTA_0130 7927 9065" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25827254..25827668) /note="source:CACAO_on_E565_scaffold_5 770 1149" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25827384..25827704 /note="source:CACAO_on_E238_scaffold_8 1934 2255" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25827705..25828183 /note="source:scaffold_10_CACTA_0130 9066 9606" /mobile_element_type="transposon:TIR/CACTA" gene 25830683..25835392 /locus_tag="TCM_015037" /note="dbxref CacaoGD:Thecc1EG015037" mRNA join(25830683..25832297,25832400..25832801, 25832909..25832956,25833187..25835392) /locus_tag="TCM_015037" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s14050.1" /inference="similar to AA sequence:Phytozome:GSVIVT01018456001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc127t1" mRNA join(25830683..25832297,25832400..25832801, 25833187..25835392) /locus_tag="TCM_015037" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s14050.1" /inference="similar to AA sequence:Phytozome:GSVIVT01018456001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b014521t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc127t1" CDS join(25831244..25832297,25832400..25832801, 25832909..25832956,25833187..25834619) /locus_tag="TCM_015037" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY23024.1" /db_xref="Phytozome:GSVIVT01018456001" /db_xref="TAIR:AT5G51800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAQ5" /translation="MGDTKGDTTKKPTPQQTQQLSSSPKESLEESSESRQKHLQQQSA VVVTGAPFISAPLYVPIGATSSPFEQQFESVNPKRPRYNSGQWKLLPSPSSLQTQAQM AIITSESSPSPTTNPKNPQTQAHTTAASSSDTASSPPHSPLPSTTSGQETNKPEGEQF HHQFRKGKYVSPVWKPNEMLWLARAWRIQYQGGSDASGSSRIGHQETSHVAGSDVAVQ STRGKTRADKDKEVAEFLNRHGINRDAKTAGTKWDNMLGEFRKVYEWERGGEKEQVGK SYFRLSPYERKLHRLPASFDEEVFEELSQFMGPRMRTSQSRASAIASGDDGRPVISGS RALPPPPPFKEDELPPSVRTKQLVTTSGGDAFFHGTRGSLLGFDNSLDVSVGLPSSSS KEPRRIGKIRMAWEESVSLWAEEGEHHRGRVRLQGSSFLNADELTFFDDTMVACTIEA FEDGPLKGFSVDRFVNGQQVKVFGRRKSSTASASSGFIDRAQLPFAEPPIRPMPPLEF QDPTDYYVGCLRVPPTTLPSLFELSWHLQEPPPEEYRFHLRKDVYRDLPPGKEVLFTT SNELLDCRAIIYDILSPIIRTNPSLSAATAASRDSFIGLWDDCINRVVSKFCSVEMVI IRKPSSSSSTEPLQDQWPNVTGFVRNFCLWRGEETDQLRESQLDPPSSIVEKLLWTYM DLPYILGYYAVGYMVTFCALSRSQDRIIRTDLYSVDLSSPSERLKALAPCCRIAGLLP LLADRCFSNVNNIGSYKQFPFSDFERIDMGNGNIMEMTPNTVIRSFSSRKKWAAVKEI YDILDHRIPHAEFICRASEKDLTLVFKPRGCKFKPVNCDQLVEALKYVTKALVALHDL CFMHRDLSWDKVLRRSDRENEWFVCGFDEAVGAPQIYPQAVAGAEARGRHAPEMGRGL HGVKVDVWGVGHLVKTCGLTNVPKMLRELQNRCLDQNPEQRPTAADCYHHLLQVQSAS SSGAPY" CDS join(25831244..25832297,25832400..25832801, 25833187..25834619) /locus_tag="TCM_015037" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY23025.1" /db_xref="Phytozome:GSVIVT01018456001" /db_xref="TAIR:AT5G51800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAQ5" /translation="MGDTKGDTTKKPTPQQTQQLSSSPKESLEESSESRQKHLQQQSA VVVTGAPFISAPLYVPIGATSSPFEQQFESVNPKRPRYNSGQWKLLPSPSSLQTQAQM AIITSESSPSPTTNPKNPQTQAHTTAASSSDTASSPPHSPLPSTTSGQETNKPEGEQF HHQFRKGKYVSPVWKPNEMLWLARAWRIQYQGGSDASGSSRIGHQETSHVAGSDVAVQ STRGKTRADKDKEVAEFLNRHGINRDAKTAGTKWDNMLGEFRKVYEWERGGEKEQVGK SYFRLSPYERKLHRLPASFDEEVFEELSQFMGPRMRTSQSRASAIASGDDGRPVISGS RALPPPPPFKEDELPPSVRTKQLVTTSGGDAFFHGTRGSLLGFDNSLDVSVGLPSSSS KEPRRIGKIRMAWEESVSLWAEEGEHHRGRVRLQGSSFLNADELTFFDDTMVACTIEA FEDGPLKGFSVDRFVNGQQVKVFGRRKSSTASASSAMPPLEFQDPTDYYVGCLRVPPT TLPSLFELSWHLQEPPPEEYRFHLRKDVYRDLPPGKEVLFTTSNELLDCRAIIYDILS PIIRTNPSLSAATAASRDSFIGLWDDCINRVVSKFCSVEMVIIRKPSSSSSTEPLQDQ WPNVTGFVRNFCLWRGEETDQLRESQLDPPSSIVEKLLWTYMDLPYILGYYAVGYMVT FCALSRSQDRIIRTDLYSVDLSSPSERLKALAPCCRIAGLLPLLADRCFSNVNNIGSY KQFPFSDFERIDMGNGNIMEMTPNTVIRSFSSRKKWAAVKEIYDILDHRIPHAEFICR ASEKDLTLVFKPRGCKFKPVNCDQLVEALKYVTKALVALHDLCFMHRDLSWDKVLRRS DRENEWFVCGFDEAVGAPQIYPQAVAGAEARGRHAPEMGRGLHGVKVDVWGVGHLVKT CGLTNVPKMLRELQNRCLDQNPEQRPTAADCYHHLLQVQSASSSGAPY" gene 25837930..25840951 /locus_tag="TCM_015038" /note="dbxref CacaoGD:Thecc1EG015038" mRNA join(25837930..25839182,25839670..25840951) /locus_tag="TCM_015038" /product="Carboxyesterase 20, putative" /inference="alignment:exonerate- protein:2:frave:gene13361.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s13770.1" /note="quality class is strong, express is strong, homology is paralog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6625t1" CDS join(25838174..25839182,25839670..25840670) /locus_tag="TCM_015038" /codon_start=1 /product="Carboxyesterase 20, putative" /protein_id="EOY23026.1" /db_xref="Phytozome:POPTR_0015s13770.1" /db_xref="TAIR:AT5G62180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVB8" /translation="MSSQTASPSNPIIVDDPYKRLEIILNSDGSLTRNPDRYPNTSAT PDPKQPIPVLSKDITINQSNNIWARIFLPRQALHTSSKLPLIVYYHAGGFIHCSAAST IFHVFCSNMALELQAIIVSVDYRLAPENRLPAAYDDAMEALHWVKTTPEDWLKRCADL ANCFLMGSSSGANIAYRAGLRSAEEADDREALKIRGLILHQPFFGGSEKVESELRLVN DPILRPGVSDLMWELALPIGADRDHAYCNPAAGKTSKVLDKLVSVGWMVLVTGCDGDP LIDRQVGLVKLMEEKGMKVVSEFRAGDHHGVDFMQPAKARALFLVLKEFILSASATVP GDGETLRPPITDPFEYLQIVLNPDGTLTRNLMIPRVVAEPNDPEGQAPVLSKDVPINP SNRTWARIFLPRQALDCTSSSANKLKLPLVVYYHGGGFVLLSADMGICHDFCSNMSKA IPAIVVSVDYRLAPENRLPAAYDDGLEALHWIKTTGDEWLREYADLSNCFLMGSSAGG NIAYHVGLRAAEVVHELEPLKIKGLVLHQPFFGGTQRIASELRLMNDPVLPPIVSDVM WDLSLPIGVDRDHEYCNPTADGGSKELEKIKSLGWKVLVYGSDGDPLIDRQIELLKLV EGKGVQVVRNVRVGGFHGEEEMDVSKAHAMHMVVKDFIMSSKQVA" mobile_element 25841033..25843690 /note="source:CACAO_hAT_E1487_scaffold_3 1 2658" /mobile_element_type="transposon:TIR/hAT" gene complement(25841365..25854000) /locus_tag="TCM_015040" /note="dbxref CacaoGD:Thecc1EG015040" mRNA complement(join(25841365..25841392,25850973..25851712, 25851836..25852157,25852320..25852899,25853317..25853448, 25853711..25853965)) /locus_tag="TCM_015040" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005462t1" /inference="similar to AA sequence:ricco:30147.m014140" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6614t2" mobile_element 25845240..25845537 /note="source:CACAO_on_E244_scaffold_9 387 673" /mobile_element_type="transposon:TIR/Mutator" mobile_element 25845625..25846065 /note="source:CACAO_on_E244_scaffold_9 675 1132" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25846648..25846697) /note="source:CACAO_M_S_E14444_F98_scaffold_2 2055 2108" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(25851089..25851712,25851836..25852157, 25852320..25852899,25853711..25854000)) /locus_tag="TCM_015040" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005462t1" /inference="similar to AA sequence:ricco:30147.m014140" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2171t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6614t2" CDS complement(join(25851449..25851712,25851836..25852157, 25852320..25852899,25853711..25853726)) /locus_tag="TCM_015040" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014140; paralog of Thecc1EG005462t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2" /protein_id="EOY23028.1" /db_xref="TAIR:AT4G25420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6ZIF9" /translation="MGNHTGLKTFTLHAMAIDCVSNLASMPHHPKDERNDEQKQLVFD VSVLKYDSNIPKEFIWPDDEKPCVNAPELQVPLIDLGDFLSGDSAAAKEASRLVGEAC QQHGFFLVVNHGVDATLVADAHKYMDNFFELPLSEKQRAHRKLGEHCGYASSFTGRFS SKLPWKETLSFRYSAEKNSSRMVEDYLVNKMGDEFRQFGRVYQDYCEAMSKLSLGIME LLAISLGVGRAHFREFFEENDSIMRLNYYPPCQKPDLTLGTGPHCDPTSLTILHQDRV GGLQVFVDNEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSHTPRKSLAFF LCPKGDKVVTPPTELVDAYSPRIYPDFTWPMLLEFTQKHYRADMNTLEVFSNWVQQRN S" CDS complement(join(25851449..25851712,25851836..25852157, 25852320..25852899,25853317..25853448,25853711..25853726)) /locus_tag="TCM_015040" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014140; paralog of Thecc1EG005462t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /protein_id="EOY23027.1" /db_xref="TAIR:AT4G25420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6ZIF9" /translation="MGNHTVQRISSHKGRHSAVSGWALPFGTEIYGSDEDSKTPLLED SEVLAGLKTFTLHAMAIDCVSNLASMPHHPKDERNDEQKQLVFDVSVLKYDSNIPKEF IWPDDEKPCVNAPELQVPLIDLGDFLSGDSAAAKEASRLVGEACQQHGFFLVVNHGVD ATLVADAHKYMDNFFELPLSEKQRAHRKLGEHCGYASSFTGRFSSKLPWKETLSFRYS AEKNSSRMVEDYLVNKMGDEFRQFGRVYQDYCEAMSKLSLGIMELLAISLGVGRAHFR EFFEENDSIMRLNYYPPCQKPDLTLGTGPHCDPTSLTILHQDRVGGLQVFVDNEWRSI SPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSHTPRKSLAFFLCPKGDKVVTPPTE LVDAYSPRIYPDFTWPMLLEFTQKHYRADMNTLEVFSNWVQQRNS" mobile_element 25854860..25854944 /note="source:CACAO_M_S_E4413_F3_scaffold_1 2998 3067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25856937..25857103) /note="source:scaffold_4_CACTA_0483 984 1160" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25861134..25861213 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3184 3262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25861139..25861226) /note="source:scaffold_6_CACTA_0712 1379 1462" /mobile_element_type="transposon:TIR/CACTA" gene complement(25862395..25872035) /locus_tag="TCM_015041" /note="dbxref CacaoGD:Thecc1EG015041" mRNA complement(join(25862395..25863025,25863094..25863199, 25863291..25863724,25863852..25863993,25865432..25865547, 25865665..25865739,25865814..25865932,25867072..25867139, 25867226..25867290,25867379..25867457,25868301..25868353, 25868441..25868563,25869221..25869289,25869437..25869505, 25869598..25869649,25870186..25870238,25870444..25870536, 25870645..25870689,25870926..25870991,25871099..25871741, 25871852..25872035)) /locus_tag="TCM_015041" /product="Phosphoglucomutase isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014138" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010981t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14030.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b014525t1a2; inference alignment:Newbler:10:TSA:cgbaB_g04523t00001" mRNA complement(join(25862411..25863025,25863094..25863199, 25863291..25863368,25863503..25863549,25863643..25863724, 25863852..25863993,25865432..25865547,25865665..25865739, 25865814..25865932,25867072..25867139,25867226..25867290, 25867379..25867457,25868301..25868353,25868441..25868563, 25869221..25869289,25869437..25869505,25869598..25869649, 25870186..25870238,25870444..25870536,25870645..25870689, 25870926..25870991,25871099..25871741,25871852..25872035)) /locus_tag="TCM_015041" /product="Phosphoglucomutase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014138" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010981t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14030.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04523t00001" CDS complement(join(25862958..25863025,25863094..25863199, 25863291..25863368,25863503..25863549,25863643..25863724, 25863852..25863993,25865432..25865547,25865665..25865739, 25865814..25865932,25867072..25867139,25867226..25867290, 25867379..25867457,25868301..25868353,25868441..25868563, 25869221..25869289,25869437..25869505,25869598..25869649, 25870186..25870238,25870444..25870536,25870645..25870689, 25870926..25870991,25871099..25871350)) /locus_tag="TCM_015041" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010981t1" /codon_start=1 /product="Phosphoglucomutase isoform 1" /protein_id="EOY23029.1" /db_xref="Phytozome:POPTR_0012s14030.1" /db_xref="TAIR:AT5G51820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCY0" /translation="MASCCNSMGLEGFFSTAFRSAKRSSNAHPIPSSFLSSSSSSSSH LDTRCFPLKTNSFSVSHSPSFTIKASSSSSTTIAEPEGIKINSVPTKPFEGQKTGTSG LRKKVQVFMQENYLSNWIQALFNSLPPKDYKNGVLVLGGDGRYFNREAAQIIIKIAAG NGVGKILVGREGIMSTPAVSAVIRKRKANGGFIMSASHNPGGPEYDWGIKFNYSSGQP APESITDKIYGNTLSISEIKMAEIPDVDLSRLGVTKYGNFSVEVIDPVSDYLELMESV FDFQLIRSLLSRSGFRFVFDAMHAVTGAYAKPIFVDKLGASLDSISNGVPLEDFGHGH PDPNLTYAKGLVNTMYSENGPDFGAASDGDGDRNMILGKKFFVTPSDSVAIIAANAQE AIPYFRNGPKGLARSMPTSGALDRVAEKLSLTFFEVPTGWKFFGNLMDDGKLSICGEE SFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGETLVSVSDVVKEHWATYGRNFFS RYDYEECESEGANKMIEYLRDLVSKNKEGAKYGDYVLQFADDFAYTDPVDGSVASKQG VRFVFTDGSRIIFRLSGTGSAGATIRIYIEQFEPDVSKHDMDAQVALKRLIDLALSVS KLKDFTGREKPTVIT" CDS complement(join(25863455..25863724,25863852..25863993, 25865432..25865547,25865665..25865739,25865814..25865932, 25867072..25867139,25867226..25867290,25867379..25867457, 25868301..25868353,25868441..25868563,25869221..25869289, 25869437..25869505,25869598..25869649,25870186..25870238, 25870444..25870536,25870645..25870689,25870926..25870991, 25871099..25871350)) /locus_tag="TCM_015041" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010981t1" /codon_start=1 /product="Phosphoglucomutase isoform 2" /protein_id="EOY23030.1" /db_xref="Phytozome:POPTR_0012s14030.1" /db_xref="TAIR:AT5G51820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCY0" /translation="MASCCNSMGLEGFFSTAFRSAKRSSNAHPIPSSFLSSSSSSSSH LDTRCFPLKTNSFSVSHSPSFTIKASSSSSTTIAEPEGIKINSVPTKPFEGQKTGTSG LRKKVQVFMQENYLSNWIQALFNSLPPKDYKNGVLVLGGDGRYFNREAAQIIIKIAAG NGVGKILVGREGIMSTPAVSAVIRKRKANGGFIMSASHNPGGPEYDWGIKFNYSSGQP APESITDKIYGNTLSISEIKMAEIPDVDLSRLGVTKYGNFSVEVIDPVSDYLELMESV FDFQLIRSLLSRSGFRFVFDAMHAVTGAYAKPIFVDKLGASLDSISNGVPLEDFGHGH PDPNLTYAKGLVNTMYSENGPDFGAASDGDGDRNMILGKKFFVTPSDSVAIIAANAQE AIPYFRNGPKGLARSMPTSGALDRVAEKLSLTFFEVPTGWKFFGNLMDDGKLSICGEE SFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGETLVSVSDVVKEHWATYGRNFFS RYDYEECESEGANKMIEYLRDLVSKNKEGAKYGKFATKPYTCCPTYCNILILYLFNCL RFLIVGDYVLQFADDFAYTDPVSFSSLHFSWSLLKM" mobile_element complement(25873354..25873681) /note="source:CACAO_M_S_E122136_F76_scaffold_10 1 339" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25873406..25878883 /note="source:CACAO_M_S_E32519_F76_scaffold_3 1 5478" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25876888..25883332) /locus_tag="TCM_015043" /note="dbxref CacaoGD:Thecc1EG015043" mRNA complement(join(25876888..25876917,25882092..25882824, 25883235..25883332)) /locus_tag="TCM_015043" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.42 coverage" mobile_element 25881665..25881840 /note="source:CACAO_Mariner_E220_scaffold_9 9957 10139" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 25881670..25881850 /note="source:CACAO_PIF_E144_scaffold_10 1 387" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25881851..25882026 /note="source:CACAO_MITE_S202_scaffold_8 393 588" /mobile_element_type="transposon:TIR/MITE" CDS complement(join(25882656..25882824,25883235..25883266)) /locus_tag="TCM_015043" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23031.1" /translation="MTIELTLRNPEDFSGDGKLENWVADWPCPNARLYYCGCLCRLGP LLSPSLRDSTCYVSNDVCKIHD" gene 25883165..25892739 /locus_tag="TCM_015044" /note="dbxref CacaoGD:Thecc1EG015044" mRNA join(25883165..25883720,25889509..25889581, 25890204..25890265,25890387..25890486,25891394..25891435, 25891726..25891767,25891870..25891930,25892425..>25892461) /locus_tag="TCM_015044" /product="AGAMOUS LIKE6-like protein, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene13356" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005458t1" /inference="similar to AA sequence:Phytozome:GSVIVT01027577001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc193t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6705t1" mRNA join(25883221..25883720,25889506..25889581, 25890204..25890265,25890387..25890486,25891394..25891435, 25891726..25891767,25891870..25891930,25892436..25892739) /locus_tag="TCM_015044" /product="AGAMOUS-like 6, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13356" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005458t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14020.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6705t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6705t1" mRNA join(25883221..25883720,25889509..25889581, 25890204..25890265,25890387..25890486,25891394..25891435, 25891726..25891767,25891870..25891994,25892437..25892739) /locus_tag="TCM_015044" /product="AGAMOUS-like 6, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13356" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005458t1" /inference="similar to AA sequence:Phytozome:GSVIVT01027577001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6705t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6705t1" mRNA join(25883221..25883720,25889509..25889581, 25890204..25890265,25890387..25890486,25891394..25891435, 25891726..25891767,25891870..25891930,25892436..25892739) /locus_tag="TCM_015044" /product="AGAMOUS LIKE6-like protein, putative isoform 4" /inference="alignment:exonerate-protein:2:frave:gene13356" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005458t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14020.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6705t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6705t1" CDS join(25883539..25883720,25889506..25889581, 25890204..25890265,25890387..25890486,25891394..25891435, 25891726..25891767,25891870..25891930,25892436..25892521) /locus_tag="TCM_015044" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005458t1" /codon_start=1 /product="AGAMOUS-like 6, putative isoform 1" /protein_id="EOY23032.1" /db_xref="Phytozome:POPTR_0012s14020.1" /db_xref="TAIR:AT2G45650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1KTF3" /translation="MGRGKVVLERIENKINRQVTFSKRRNGMLKKAYELSVLCDAEVA LIIFSSRGKLSEFGSSTSVSQTLEKYWQHRYTSNVHLMDETQTLYQEVLKLKAKYESL QRSQRHLFGEELEPLSIKELYKIEKQLDRALTQARQKKVQLLLERMEELRKKEVELED ENKRLQSQLELEQSFPAAQGLGDPNIEAGYHQFIPQERVSEARVDRGANKPTAGWL" CDS join(25883539..25883720,25889509..25889581, 25890204..25890265,25890387..25890486,25891394..25891435, 25891726..25891767,25891870..25891994,25892437..25892521) /locus_tag="TCM_015044" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005458t1" /codon_start=1 /product="AGAMOUS-like 6, putative isoform 2" /protein_id="EOY23033.1" /db_xref="Phytozome:GSVIVT01027577001" /db_xref="TAIR:AT2G45650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1KTF3" /translation="MGRGKVVLERIENKINRQVTFSKRRNGMLKKAYELSVLCDAEVA LIIFSSRGKLSEFGSSTVSQTLEKYWQHRYTSNVHLMDETQTLYQEVLKLKAKYESLQ RSQRHLFGEELEPLSIKELYKIEKQLDRALTQARQKKVQLLLERMEELRKKEVELEDE NKRLQSQLELEQSFPAAQGLGDPNIEAGNESNIPPSQANHAQLPSLLQGYHQFIPQER VSEARVDRGANKPTAGWL" CDS join(25883539..25883720,25889509..25889581, 25890204..25890265,25890387..25890486,25891394..25891435, 25891726..25891767,25891870..25891930,25892436..25892521) /locus_tag="TCM_015044" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG005458t1" /codon_start=1 /product="AGAMOUS LIKE6-like protein, putative isoform 4" /protein_id="EOY23035.1" /db_xref="Phytozome:POPTR_0012s14020.1" /db_xref="TAIR:AT2G45650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1KTF3" /translation="MGRGKVVLERIENKINRQVTFSKRRNGMLKKAYELSVLCDAEVA LIIFSSRGKLSEFGSSTVSQTLEKYWQHRYTSNVHLMDETQTLYQEVLKLKAKYESLQ RSQRHLFGEELEPLSIKELYKIEKQLDRALTQARQKKVQLLLERMEELRKKEVELEDE NKRLQSQLELEQSFPAAQGLGDPNIEAGYHQFIPQERVSEARVDRGANKPTAGWL" CDS join(25883539..25883720,25889509..25889581, 25890204..25890265,25890387..25890486,25891394..25891435, 25891726..25891767,25891870..25891930,25892425..>25892459) /locus_tag="TCM_015044" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005458t1" /codon_start=1 /product="AGAMOUS LIKE6-like protein, putative isoform 3" /protein_id="EOY23034.1" /db_xref="Phytozome:GSVIVT01027577001" /db_xref="TAIR:AT2G45650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1KTF3" /translation="MGRGKVVLERIENKINRQVTFSKRRNGMLKKAYELSVLCDAEVA LIIFSSRGKLSEFGSSTVSQTLEKYWQHRYTSNVHLMDETQTLYQEVLKLKAKYESLQ RSQRHLFGEELEPLSIKELYKIEKQLDRALTQARQKKVQLLLERMEELRKKEVELEDE NKRLQSQLELEQSFPAAQGLGDPNIEAAPVTGTISLFPK" mobile_element complement(25885963..25886616) /note="source:CACAO_hAT_E410_scaffold_1 1425 2080" /mobile_element_type="transposon:TIR/hAT" mobile_element 25886608..25886745 /note="source:scaffold_9_CACTA_0934 14615 14756" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25887199..25887294) /note="source:scaffold_10_CACTA_0130 1145 1214" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25887742..25887974) /note="source:scaffold_5_CACTA_0585 10860 11068" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25887936..25888010) /note="source:CACAO_M_E58877_F5_scaffold_9 6851 6923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25889102..25889139) /note="source:CACAO_M_E3248_F5_scaffold_1 3699 3736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25893007..25893134) /note="source:scaffold_9_CACTA_0942 5244 5388" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25893024..25893190 /note="source:scaffold_9_CACTA_0946 17761 17942" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25893193..25894542 /note="source:CACAO_hAT_E1967_scaffold_5 2 2188" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(25894443..25894553) /note="source:CACAO_Again_on_S_E166_scaffold_5 1 121" /mobile_element_type="transposon:TIR/hAT" mobile_element 25896387..25896490 /note="source:scaffold_1_CACTA_0008 6620 6963" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25896491..25897051 /note="source:INTACT135F_F90_scaffold_2-int 13429 14001" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25897369..25897492) /note="source:CACAO_M_S_E84604_F20_scaffold_6 7 129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25898674..25898914 /note="source:scaffold_5_CACTA_0580 10130 10383" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25899383..25899472) /note="source:scaffold_4_CACTA_0505 18850 18938" /mobile_element_type="transposon:TIR/CACTA" gene 25901137..25904890 /locus_tag="TCM_015045" /note="dbxref CacaoGD:Thecc1EG015045" mRNA join(25901137..25901472,25902245..25902462, 25903019..25903231,25903339..25903536,25903618..25903758, 25904102..25904218,25904629..25904890) /locus_tag="TCM_015045" /product="PfkB-like carbohydrate kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018449001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019205t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018449001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08234t00001" CDS join(25901451..25901472,25902245..25902462, 25903019..25903231,25903339..25903536,25903618..25903758, 25904102..25904218,25904629..25904766) /locus_tag="TCM_015045" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019205t1" /codon_start=1 /product="PfkB-like carbohydrate kinase family protein isoform 1" /protein_id="EOY23036.1" /db_xref="Phytozome:GSVIVT01018449001" /db_xref="TAIR:AT5G51830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DDD3" /translation="MAGNLTTGRAEDLSANTNGKSADNNSIVVCFGELLIDFVPTVGG VSLAEAPAFKKAPGGAPANVAVGVARLGGSSAFIGKVGDDEFGHMLADILRQNNVDIS GMRFDHSARTALAFVTLRADGEREFLFFRHPSADMRLHESELDINLIKQAKIFHYGSI SLIEEPCKSAHLAAMNIAKRSGSILSYDPNLRLPLWPSSEAARTGIMSIWDQADLIKV SEDEIKFLTGGDDPYDDNVVMKKLYHPNLKLLVVTEGSEGCRYYTKAFKGRVPGIKVK PVDTTGAGDAFVSGLLSSLASDLKLFEDEERLREALNFANACGALTVTERGAIPAMPM KKAVIDALTKFAAS" mRNA join(<25902249..25902462,25903019..25903231, 25903339..25903536,25903618..25903758,25904102..>25904129) /locus_tag="TCM_015045" /product="PfkB-like carbohydrate kinase family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13356" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018449001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019205t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018449001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc299t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc835t4; inference alignment:Newbler:10:TSA:cgbaB_g08234t00001" CDS join(<25902250..25902462,25903019..25903231, 25903339..25903536,25903618..25903758,25904102..>25904128) /locus_tag="TCM_015045" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019205t1" /codon_start=1 /product="PfkB-like carbohydrate kinase family protein isoform 2" /protein_id="EOY23037.1" /db_xref="Phytozome:GSVIVT01018449001" /db_xref="TAIR:AT5G51830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DDD3" /translation="AEDLSANTNGKSADNNSIVVCFGELLIDFVPTVGGVSLAEAPAF KKAPGGAPANVAVGVARLGGSSAFIGKVGDDEFGHMLADILRQNNVDISGMRFDHSAR TALAFVTLRADGEREFLFFRHPSADMRLHESELDINLIKQAKIFHYGSISLIEEPCKS AHLAAMNIAKRSGSILSYDPNLRLPLWPSSEAARTGIMSIWDQADLIKVSEDEIKFLT GGDDPYDDNVVMKKLYHPNLKLLVVTEGSEGCRYYTKAFKGRVPGI" gene 25905542..25910852 /locus_tag="TCM_015046" /note="dbxref CacaoGD:Thecc1EG015046" mRNA join(25905542..25905827,25907888..25908102, 25908174..25908234,25908700..25908953,25909042..25909239, 25910002..25910150,25910441..25910852) /locus_tag="TCM_015046" /product="PfkB-like carbohydrate kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s15290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015045t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14010.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2088t2" CDS join(25905752..25905827,25907888..25908102, 25908174..25908234,25908700..25908953,25909042..25909239, 25910002..25910150,25910441..25910606) /locus_tag="TCM_015046" /note="paralog of Thecc1EG015045t1" /codon_start=1 /product="PfkB-like carbohydrate kinase family protein, putative" /protein_id="EOY23038.1" /db_xref="Phytozome:POPTR_0012s14010.1" /db_xref="TAIR:AT5G51830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DDD3" /translation="MLNRLSSYAWPCCPTSPPANGSVQLGCAKDIGANTNGKLPNNSL LVCFGEILMDFVPTVGGFSLAEVPAFRMSPGGAPANVAVGISRLGCSSAFIGKVENWS LFKKKLKEKLSSFPVDVLPVPNALQFHTIWLVMKNFATSQLTFRDKTMSTMLECVLTI VQELHCHLLHSELIVKGNFFYRHLSADMHLRESELDINPIKQAGIFHYGSVCLIEERC RSAHLAAMNIARQSGSIPSYDPNLTLPLWASAEAARQGIISIWDQADVIKLHIVQTFK GRAPGIKDKPVDTTGAGDAFVSGMLTSLASDIKLIEVPLSVSFLWEFIHEVILVTGRE ALLFANACGALTVTRRGAIPALRTKETVLQVLNVVAAS" gene 25911450..25914864 /locus_tag="TCM_015047" /note="dbxref CacaoGD:Thecc1EG015047" mRNA join(25911450..25911886,25912003..25912034, 25912813..25912910,25913014..25913096,25913578..25913655, 25913730..25913828,25914547..25914864) /locus_tag="TCM_015047" /product="MRNA, cds, clone: RAFL24-31-B07, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018448001" /inference="similar to AA sequence:Phytozome:GSVIVT01018448001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08759t00001" CDS join(25911803..25911886,25912003..25912034, 25912813..25912910,25913014..25913096,25913578..25913655, 25913730..25913828,25914547..25914843) /locus_tag="TCM_015047" /codon_start=1 /product="MRNA, cds, clone: RAFL24-31-B07, putative" /protein_id="EOY23039.1" /db_xref="Phytozome:GSVIVT01018448001" /db_xref="TAIR:AT5G51840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67YH6" /translation="MASNPALKPEIGPDGLAREAPVIAYTEKIIEEEQLQLKKYIEEN YSKIRDVERELSNLTMEMKLTAGPKKAALEHLRKKIEMSTERIHIAKQKEEQARKTWE AAVKALNDEEAIKQKLCEDLNNLVQESSNSQFARLEELKRRLEALNPSRASTLSHHDR KAIGSAQGAATGDASSVPQTTQSGSTASENVPNQRNDGNVLAMNGQNQLPTNDGEVKG KKKSQFQGRGKGIGAVPKGRGSAAPGWTGAGFDVDGRT" mobile_element complement(25915113..25915158) /note="source:scaffold_5_CACTA_0596 1804 1850" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25918718..25918735 /note="source:CACAO_M_E24751_F297_scaffold_4 1256 1291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25918736..25918809 /note="source:scaffold_6_CACTA_0712 1386 1460" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25918750..25918839) /note="source:scaffold_6_CACTA_0706 1405 1485" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25918810..25918826 /note="source:CACAO_M_E24751_F297_scaffold_4 1292 1331" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25919708..25923881 /locus_tag="TCM_015048" /note="dbxref CacaoGD:Thecc1EG015048" mRNA join(25919708..25920421,25920477..25920971, 25921064..25921176,25921368..25922507,25922654..25923881) /locus_tag="TCM_015048" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014134" /inference="similar to AA sequence:ricco:30147.m014134" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1462t1" CDS join(25920728..25920971,25921064..25921176, 25921368..25922507,25922654..25923373) /locus_tag="TCM_015048" /note="dbxref ricco:30147.m014134" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23040.1" /db_xref="TAIR:AT5G62170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID03" /translation="MGRDWYWGTGAKTSSNSNSSKRASDRDSGGQTTPSGCISAVFHL FDFHHFQFPLNHQTSSSSCSCFKPDSFLSPGHTTALKGAEAPRNSLESEEEGSTSASA SASFTSTSKEEEILNIPMGIQIKTSGDTRSKVGAPNNDTSSEISCSPGTKTPTLVARL MGLDLLPESRSPSFSSAPHFQAKSHLNHHIRSPKPLQSKRTSHRNSLDGEIRGTRSLP ETPRISSARRSDVDHHHRLSLQINKENMSASEELVISRLSSLKRKELKHEDENRSPGH YARQIVKQVKESVSRKVGMDITNSVRNREQAREELVSQFKYKKISRALTKVGDDSSPG KHSTPSCSPRLRFLESKSKPVINSTTKDHNLQPPESSFSSPPEINILPQPIRVLPKPK LQTVEEERDEHHKQQQQLLPRAVSKCKKGSSEKFGSRLKKPQQTSDIIRNKQEEPFVR PSAANRVNIPDKKCRKTPLSNDLLSMTVPTLLPVKKDPSPPATKIPQKQVLDAQRPKR SSQLSSCSSQMYNKQEATQVHVSRNNNGDKCNDATTPTSTTGNDAEYEYIARILGRTG LNKDTPVSFTSWFSPSHPLDPSIFYYLEHFTTCSTAILSNNNNNNNNRTKSSQLSHRC NRKLLFHLVDEILIEILKPYFNMKPWVTTVGHDVSHMDGSQLKDILCSKIRSFPRADC RVLEDIDALIDKDLPEMKVQSVTAYEEEGEGIVTEIEKDILEALVHETAADFGVRV" mobile_element 25924615..25924690 /note="source:CACAO_M_E58268_F98_scaffold_9 592 678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25924630..25924699) /note="source:scaffold_1_CACTA_0006 8438 8508" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25926868..25927276) /note="source:CACAO_Again_on_E219_scaffold_10 7 422" /mobile_element_type="transposon:TIR/hAT" gene complement(25927524..25934098) /locus_tag="TCM_015049" /note="dbxref CacaoGD:Thecc1EG015049" mRNA complement(join(25927524..25928061,25928270..25928311, 25928410..25928451,25928562..25928661,25928758..25928819, 25930465..25930546,25933360..25933544,25933632..25934098)) /locus_tag="TCM_015049" /product="AGAMOUS-like 20" /inference="alignment:exonerate- protein:2:ricco:30147.m014133" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005456t5" /inference="similar to AA sequence:TAIR:AT2G45660.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6670t1" CDS complement(join(25927858..25928061,25928270..25928311, 25928410..25928451,25928562..25928661,25928758..25928819, 25930465..25930546,25933360..25933541)) /locus_tag="TCM_015049" /note="paralog of Thecc1EG005456t5" /codon_start=1 /product="AGAMOUS-like 20" /protein_id="EOY23041.1" /db_xref="TAIR:AT2G45660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GPT3" /translation="MARGKIQMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVA VIIFSPKGRVYEFSSSDLQKTIDRYHKYIKEVQNDKPEMERYSQQLRLEAANMVKKIE LLEVSQRKLLGQGLGLCSVEELQEIENQLERSLRNIRARKSLVFKEQIEQLKAKERLL REENAKLSEKSLVGSKGGHQLNGKKPQYLAAKAAGAQRWRQNCSLDCQKTAAPSKLVF GHRNVIRPISSHQLVATVE" gene 25934637..25944066 /locus_tag="TCM_015050" /note="dbxref CacaoGD:Thecc1EG015050" mRNA join(25934637..25934709,25938828..25938959, 25939948..25940004,25940227..25940298,25940380..25940425, 25941447..25941562,25944026..25944066) /locus_tag="TCM_015050" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is utrpoor_complete" mobile_element 25937221..25938577 /note="source:CACAO_Again_on_E92_scaffold_3 1 1287" /mobile_element_type="transposon:TIR/hAT" CDS join(25938887..25938959,25939948..25940004, 25940227..25940298,25940380..25940425,25941447..25941562, 25944026..25944054) /locus_tag="TCM_015050" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23042.1" /translation="MSIIRQQLQKLMALINVDNFDIDQGIDNHLSCTETPQQNRVVEL QNRTKFDKRASKCIFIGYPNEIKAYKAYQRSFNISSNNCTSVQALNDVKTYLSSQYKL KDLGNVKYFLELEVARSKEVQKILFEIF" mobile_element 25944174..25944223 /note="source:MITE_CACTA_21 3 53" /mobile_element_type="transposon:TIR/MITE" gene 25945416..25949038 /locus_tag="TCM_015052" /note="dbxref CacaoGD:Thecc1EG015052" mRNA join(25945416..25945755,25946497..25946744, 25947079..25947292,25947460..25947616,25948420..25949038) /locus_tag="TCM_015052" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018444001" /inference="similar to AA sequence:Phytozome:POPTR_0015s13940.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:PASA:2:TSA:puevd3b014536t1a2; alternateUTRof:Thecc1EG015052t1; inference alignment:Newbler:10:TSA:cgbaB_g09875t00001" mRNA join(25945418..25945755,25946497..25946744, 25947079..25947292,25947460..25947612,25948191..25948282) /locus_tag="TCM_015052" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018444001" /inference="similar to AA sequence:Phytozome:POPTR_0015s13940.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09875t00001" mRNA join(25945581..25945755,25946497..25946744, 25947079..25947292,25947460..25947882) /locus_tag="TCM_015052" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018444001" /inference="similar to AA sequence:Phytozome:POPTR_0015s13940.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6681t3; alternateUTRof:Thecc1EG015052t1; inference alignment:Newbler:10:TSA:cgbaB_g09875t00001" mRNA join(25945585..25945755,25946497..25946744, 25947079..25947292,25947460..25947612,25948420..25948816) /locus_tag="TCM_015052" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018444001" /inference="similar to AA sequence:Phytozome:POPTR_0015s13940.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09875t00001; alternateUTRof:Thecc1EG015052t1; inference alignment:Newbler:10:TSA:cgbaB_g09875t00001" CDS join(25945609..25945755,25946497..25946744, 25947079..25947292,25947460..25947582) /locus_tag="TCM_015052" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /protein_id="EOY23043.1" /db_xref="Phytozome:POPTR_0015s13940.1" /db_xref="TAIR:AT5G51880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T1T3" /translation="MEEAGTKKRKMGERRAADNKKAATTAKWPVVKPKLNLQIRRLKD TDLFTVQNFFSSVESRAFIKAAESIGFEHQGSLGPTRGEAYRDNDRISVNDPALADAI WQSGLSKLFSDIKIRGKVAVGLNPNIRFYRYKVGQRFGRHIDESVDLGAGKCTHYTLL IYLSGGSKTNGKSDSSNQKDSVSEPLVGGETVFYGSRNGVVAEVAPAEGMALLHIHGD KCMLHEARNVSKGIKYVFRSDVVFA" CDS join(25945609..25945755,25946497..25946744, 25947079..25947292,25947460..25947582) /locus_tag="TCM_015052" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /protein_id="EOY23044.1" /db_xref="Phytozome:POPTR_0015s13940.1" /db_xref="TAIR:AT5G51880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T1T3" /translation="MEEAGTKKRKMGERRAADNKKAATTAKWPVVKPKLNLQIRRLKD TDLFTVQNFFSSVESRAFIKAAESIGFEHQGSLGPTRGEAYRDNDRISVNDPALADAI WQSGLSKLFSDIKIRGKVAVGLNPNIRFYRYKVGQRFGRHIDESVDLGAGKCTHYTLL IYLSGGSKTNGKSDSSNQKDSVSEPLVGGETVFYGSRNGVVAEVAPAEGMALLHIHGD KCMLHEARNVSKGIKYVFRSDVVFA" CDS join(25945609..25945755,25946497..25946744, 25947079..25947292,25947460..25947582) /locus_tag="TCM_015052" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /protein_id="EOY23045.1" /db_xref="Phytozome:POPTR_0015s13940.1" /db_xref="TAIR:AT5G51880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T1T3" /translation="MEEAGTKKRKMGERRAADNKKAATTAKWPVVKPKLNLQIRRLKD TDLFTVQNFFSSVESRAFIKAAESIGFEHQGSLGPTRGEAYRDNDRISVNDPALADAI WQSGLSKLFSDIKIRGKVAVGLNPNIRFYRYKVGQRFGRHIDESVDLGAGKCTHYTLL IYLSGGSKTNGKSDSSNQKDSVSEPLVGGETVFYGSRNGVVAEVAPAEGMALLHIHGD KCMLHEARNVSKGIKYVFRSDVVFA" CDS join(25945609..25945755,25946497..25946744, 25947079..25947292,25947460..25947582) /locus_tag="TCM_015052" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /protein_id="EOY23046.1" /db_xref="Phytozome:POPTR_0015s13940.1" /db_xref="TAIR:AT5G51880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T1T3" /translation="MEEAGTKKRKMGERRAADNKKAATTAKWPVVKPKLNLQIRRLKD TDLFTVQNFFSSVESRAFIKAAESIGFEHQGSLGPTRGEAYRDNDRISVNDPALADAI WQSGLSKLFSDIKIRGKVAVGLNPNIRFYRYKVGQRFGRHIDESVDLGAGKCTHYTLL IYLSGGSKTNGKSDSSNQKDSVSEPLVGGETVFYGSRNGVVAEVAPAEGMALLHIHGD KCMLHEARNVSKGIKYVFRSDVVFA" gene complement(25948395..25950349) /locus_tag="TCM_015053" /note="dbxref CacaoGD:Thecc1EG015053" mRNA complement(join(25948395..25948750,25949127..25949256, 25949344..25949651,25949766..25949954,25950058..25950349)) /locus_tag="TCM_015053" /product="Peroxidase, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014131" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034278t1" /inference="similar to AA sequence:ricco:30147.m014131" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc932t8" CDS complement(join(25948676..25948750,25949127..25949256, 25949344..25949651,25949766..25949954,25950058..25950279)) /locus_tag="TCM_015053" /note="dbxref ricco:30147.m014131; paralog of Thecc1EG034278t1" /codon_start=1 /product="Peroxidase, putative" /protein_id="EOY23047.1" /db_xref="TAIR:AT5G51890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0KKH9" /translation="MATLALNKLFLPIVFLVLIIEVSQSKAALDARYYDQTCPEAEKI ILDTVRNASMHDPKVPARILRMFFHDCFVRGCDASVLLDLTPQNKAEKDGPPNISLQA FYVIDDAKAKLERACPQTVSCADIITIAARDVVAMEGKMEESPVQPKQLTYQRQLSTF RNSIQSFAKRGLGVKDLVALSGGHTLGFSHCSSFQARLHNFSSVHDIDPSLNSEFAET LRKKCPKPNKDRNAGQFLDSTATRWIVESFAKDQTLFFKEFAASMVKLGNVRVIENGE VRLKCRVVIKMRINMLASIILLEEVMPHPQT" gene complement(25952209..25953869) /locus_tag="TCM_015054" /note="dbxref CacaoGD:Thecc1EG015054" mRNA complement(join(25952209..25953505,25953654..25953869)) /locus_tag="TCM_015054" /product="TCP family transcription factor, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014152" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005447t1" /inference="similar to AA sequence:ricco:30147.m014152" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09027t00001" CDS complement(25952429..25953478) /locus_tag="TCM_015054" /note="dbxref ricco:30147.m014152; paralog of Thecc1EG005447t1" /codon_start=1 /product="TCP family transcription factor, putative" /protein_id="EOY23048.1" /db_xref="TAIR:AT5G51910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9I7" /translation="MECNQNQTIEEIDESINNNTTIIIIEEQQQQSNNTTPSFSPSEA TVMDPNQPMKEEDLTDTEPREFTNSTLVHGLVPVMPAAQTNRSFVPKRPSKDRHTKVE GRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVS VNGTLKIPTSSGKQDGDLPRKRRKRPSNSEFIDVNEHQSSVSSGLAPIAPVTYSSINV NSQGLVPLWPMGTFGVLPAAAGGAPGSNQAQLWAIPATATPFFNVARRPISSFVSAMQ PEVQGSSDGTMGSSGVPSSNSGTTSVAGVSSSSNGNSNSTTQMLRDFSLEILDKRELQ FLGRPANHQTPCSKP" gene complement(25954604..25959533) /locus_tag="TCM_015055" /note="dbxref CacaoGD:Thecc1EG015055" mRNA complement(join(25954604..25955137,25955749..25955898, 25956008..25956148,25956242..25956329,25956578..25956633, 25956724..25956799,25956883..25956956,25957111..25957269, 25957956..25958099,25958612..25958744,25958994..25959100, 25959206..25959514)) /locus_tag="TCM_015055" /product="Hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039440" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016163t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019875001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6800t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6800t3" mRNA complement(join(25954689..25954960,25955753..25955898, 25956008..25956148,25956242..25956329,25956578..25956633, 25956724..25956799,25956883..25956956,25957111..25957269, 25957956..25958099,25958612..25958744,25958994..25959100, 25959206..25959533)) /locus_tag="TCM_015055" /product="Hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039440" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016163t1" /inference="similar to AA sequence:ricco:30190.m011109" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1851t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6800t3" CDS complement(join(25954939..25954960,25955753..25955898, 25956008..25956148,25956242..25956329,25956578..25956633, 25956724..25956799,25956883..25956956,25957111..25957269, 25957956..25958099,25958612..25958744,25958994..25959100, 25959206..25959277)) /locus_tag="TCM_015055" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30190.m011109; paralog of Thecc1EG016163t1" /codon_start=1 /product="Hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase isoform 5" /protein_id="EOY23053.1" /db_xref="TAIR:AT4G11820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P54873" /translation="MASHPENVGILAIDIYFPPTCIQQEVLEAHDGASKGKYTIGLGQ DCMAFCTEVEDVISMSLTVVTSLLEKYEIDPTKIGRLEVGSETVIDKSKSIKTFLMQI FEECGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPAR PTGGAAAIAMLVGPNAPIAFESKFRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLM ALDLCYKHFYEKFEKLQGRPFSISDADYFVFHSPYNKLVQKSFARLFFNDFLRNASYI DEGAKEKLTPFSGLSNDESYQSRDLEKASQQVAKPLYDSMVQPSTLLPKQVGNMYTAS LYAAFASLLHNKHTSLAGKRVVMFSYGSGLTATIFSLKLQDGRHPFNLLNIAKLMNVS EKLKLRHQNGFAN" CDS complement(join(25954943..25955137,25955749..25955898, 25956008..25956148,25956242..25956329,25956578..25956633, 25956724..25956799,25956883..25956956,25957111..25957269, 25957956..25958099,25958612..25958744,25958994..25959100, 25959206..25959277)) /locus_tag="TCM_015055" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016163t1" /codon_start=1 /product="Hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase isoform 1" /protein_id="EOY23049.1" /db_xref="Phytozome:GSVIVT01019875001" /db_xref="TAIR:AT4G11820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P54873" /translation="MASHPENVGILAIDIYFPPTCIQQEVLEAHDGASKGKYTIGLGQ DCMAFCTEVEDVISMSLTVVTSLLEKYEIDPTKIGRLEVGSETVIDKSKSIKTFLMQI FEECGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPAR PTGGAAAIAMLVGPNAPIAFESKFRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLM ALDLCYKHFYEKFEKLQGRPFSISDADYFVFHSPYNKLVQKSFARLFFNDFLRNASYI DEGAKEKLTPFSGLSNDESYQSRDLEKASQQVAKPLYDSMVQPSTLLPKQVGNMYTAS LYAAFASLLHNKHTSLAGKRVVMFSYGSGLTATIFSLKLQDGRHPFNLLNIAKLMNVS EKLKLRHEFPPEKFVDTMKLMEQRYGAKDFVTSKESSLLLPDTYYLTKVDSMYRRFYS RKANAAAATPERFC" mRNA complement(join(25955110..25955137,25955749..25955894, 25956008..25956148,25956242..25956329,25956578..25956633, 25956724..25956799,25956883..25956956,25957111..25957269, 25957956..25958099,25958612..25958744,25958994..25959135, 25959206..25959235)) /locus_tag="TCM_015055" /product="Hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039440" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016163t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019875001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1553t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6800t3" mRNA complement(join(<25955110..25955137,25955749..25955898, 25956008..25956148,25956242..25956329,25956578..25956633, 25956724..25956799,25956883..25956956,25957111..25957269, 25957956..25958099,25958612..25958744,25958994..25959135, 25959206..25959235)) /locus_tag="TCM_015055" /product="Hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039440" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016163t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019875001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1553t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6800t3" mRNA complement(join(<25955110..25955137,25955749..25955898, 25956008..25956148,25956242..25956329,25956578..25956633, 25956724..25956799,25956883..25956956,25957111..25957269, 25957956..25958099,25958612..25959135,25959206..25959235)) /locus_tag="TCM_015055" /product="Hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039440" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016163t1" /inference="similar to AA sequence:ricco:30190.m011109" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1553t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6800t3" CDS complement(join(<25955111..25955137,25955749..25955898, 25956008..25956148,25956242..25956329,25956578..25956633, 25956724..25956799,25956883..25956956,25957111..25957269, 25957956..25958099,25958612..25958744,25958994..25959034)) /locus_tag="TCM_015055" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016163t1" /codon_start=1 /product="Hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase isoform 2" /protein_id="EOY23050.1" /db_xref="Phytozome:GSVIVT01019875001" /db_xref="TAIR:AT4G11820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P54873" /translation="MAFCTEVEDVISMSLTVVTSLLEKYEIDPTKIGRLEVGSETVID KSKSIKTFLMQIFEECGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVC TDSAVYAEGPARPTGGAAAIAMLVGPNAPIAFESKFRGSHMSHAYDFYKPNLASEYPV VDGKLSQTCYLMALDLCYKHFYEKFEKLQGRPFSISDADYFVFHSPYNKLVQKSFARL FFNDFLRNASYIDEGAKEKLTPFSGLSNDESYQSRDLEKASQQVAKPLYDSMVQPSTL LPKQVGNMYTASLYAAFASLLHNKHTSLAGKRVVMFSYGSGLTATIFSLKLQDGRHPF NLLNIAKLMNVSEKLKLRHEFPPEKFVDT" CDS complement(join(<25955111..25955137,25955749..25955898, 25956008..25956148,25956242..25956329,25956578..25956633, 25956724..25956799,25956883..25956956,25957111..25957269, 25957956..25958099,25958612..25958626)) /locus_tag="TCM_015055" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30190.m011109; paralog of Thecc1EG016163t1" /codon_start=1 /product="Hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase isoform 4" /protein_id="EOY23052.1" /db_xref="TAIR:AT4G11820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P54873" /translation="MQIFEECGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRY GLVVCTDSAVYAEGPARPTGGAAAIAMLVGPNAPIAFESKFRGSHMSHAYDFYKPNLA SEYPVVDGKLSQTCYLMALDLCYKHFYEKFEKLQGRPFSISDADYFVFHSPYNKLVQK SFARLFFNDFLRNASYIDEGAKEKLTPFSGLSNDESYQSRDLEKASQQVAKPLYDSMV QPSTLLPKQVGNMYTASLYAAFASLLHNKHTSLAGKRVVMFSYGSGLTATIFSLKLQD GRHPFNLLNIAKLMNVSEKLKLRHEFPPEKFVDT" CDS complement(join(25955883..25955894,25956008..25956148, 25956242..25956329,25956578..25956633,25956724..25956799, 25956883..25956956,25957111..25957269,25957956..25958099, 25958612..25958744,25958994..25959034)) /locus_tag="TCM_015055" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG016163t1" /codon_start=1 /product="Hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase isoform 3" /protein_id="EOY23051.1" /db_xref="Phytozome:GSVIVT01019875001" /db_xref="TAIR:AT4G11820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P54873" /translation="MAFCTEVEDVISMSLTVVTSLLEKYEIDPTKIGRLEVGSETVID KSKSIKTFLMQIFEECGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVC TDSAVYAEGPARPTGGAAAIAMLVGPNAPIAFESKFRGSHMSHAYDFYKPNLASEYPV VDGKLSQTCYLMALDLCYKHFYEKFEKLQGRPFSISDADYFVFHSPYNKLVQKSFARL FFNDFLRNASYIDEGAKEKLTPFSGLSNDESYQSRDLEKASQQVAKPLYDSMVQPSTL LPKQVGNMYTASLYAAFASLLHNKHTSLANG" mobile_element complement(25958162..25958241) /note="source:CACAO_M_S_E14444_F98_scaffold_2 2020 2095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25958170..25958240 /note="source:CACAO_M_E12463_F12_scaffold_3 4652 4719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25960220..25965265) /note="source:INTACT252_F184_scaffold_5-int 1 5055" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(25964967..25969882) /locus_tag="TCM_015057" /note="dbxref CacaoGD:Thecc1EG015057" mRNA complement(join(25964967..25966488,25966573..25967211, 25969857..25969882)) /locus_tag="TCM_015057" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020418t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400057896" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1833t1" CDS complement(join(25965941..25966488,25966573..25967137)) /locus_tag="TCM_015057" /note="paralog of Thecc1EG020418t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23054.1" /db_xref="Phytozome:PGSC0003DMP400057896" /translation="MYALAVKKSGKVAEFGIWEDGRWAWNVQFRRQLFDWEVEQWEQF HDNFKEFHFCKDFKDEHVWKRETSGNYTTKSFCRYVHVSNENVDRVWNYVWANLAPFR IEVFMWQLLQGKIGVKDELAKRGVNLKNMLQCALCNVIRETCDHLFITCRKSWKVWMG WCRMWGMGWVLPSNVKDLFAMWNEWQLGGKEWNTDQVLELARIRVATWVNAKWPREYP SALNVYRQPTIQCQLPKKGQERKGIQWDKPRYGQMKFNVDGAARGCPRPTGIGGILRD HRGEVKIIFSKPISETDSNFAEMMAIKEAFLIFSVSRWKNNHKLLIESDSSNAVKWIK HPDGAPWRMRKLILQTKKLKREVEGWEIQHVRREAN" gene complement(25970056..25973052) /locus_tag="TCM_015060" /note="dbxref CacaoGD:Thecc1EG015060" mRNA complement(25970056..25973052) /locus_tag="TCM_015060" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage" CDS complement(25970656..25972542) /locus_tag="TCM_015060" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23055.1" /translation="MDQQLRARERERELRAREGVGARQSGLGRDVWHAQRIANPNQAK GDRDQEHRNTVGGRKRDPWGVERWIRTLFTAFVENLQQNVEWRQLKGSLMNLEWWLIS FFLALREARQPGMLLCGTRRNGNWQEQSSWAWSKDKWEADKGTEAEKPKDLKANRDGD VLENRILKGKGENSRTFKETLVANTPMGNKGDQEEQSGNEIVNRKITSVVIKEEDLEW LGRSALGQLRSPINCGSVECSLFREGILAQVRPVGGLFVLVTFRDRQKMEDYLDRCMD LFEPWFASLSPYCVGQDERSFNVWVKLEEIPLHVWHESSFKAIGDTWGKFIKADKDTK ESWRLDQALICMEVKSLKQITMYTHLKVNGRDYFIIATIVNVIKSELKVRASSYGEKT SDSKPESRWSEEGQHVDWVESGGCTPIEENCIRTVARMRVKESLQSLLARPMKNGHFS EERSDERESKIERRSMFEMNWAKKEHISNSNREWIGKEEDTSPSEKEAEEKDGAKKVT QEGVKASETGQQLGSNKSSKRKKAIKEKKCPGQRGYSPANSRGSENGLNGFEKRAQNA HEKCKGIDGNTSAKELFVSGENLGSCDEATQMERKRTKGESILAEGNRGSVNIMGEDL LKEK" gene complement(25973904..25976691) /locus_tag="TCM_015061" /note="dbxref CacaoGD:Thecc1EG015061" mRNA complement(25973904..25976691) /locus_tag="TCM_015061" /product="Pyridoxal phosphate-dependent transferases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016164t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13690.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1369t1; inference alignment:Newbler:10:TSA:cgbaL_g14073t00001" CDS complement(25974594..25976651) /locus_tag="TCM_015061" /note="paralog of Thecc1EG016164t1" /codon_start=1 /product="Pyridoxal phosphate-dependent transferases superfamily protein" /protein_id="EOY23056.1" /db_xref="Phytozome:POPTR_0015s13690.1" /db_xref="TAIR:AT5G51920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID26" /translation="MKADLKEANNEEKGGERETNEKISRSMMEENRKTQSACLKEESQ VCLHGCCPFPFLSAHEPQSRASKPTSTSAACRRDFASKTTSSIFPNTQFTNHESLPSV QESLAEFTKAYPQYSDTYQVDQIRAQEYYHLSLSNRTCLDYLGIGLFSYSQPQKHESP TCRIASSSYPVPPQSPPPILDIPFFGVSYKTGNLKTQLLHGGPASELESAIRKRIMTF LNVSENDYCMVFTANKTSAFKLLAESYPFQSNRKLLTVYDYESEAIEAMNNSSEKKGA RVMSAEFSWPRLRIQSSKLRKMVESKEKKKKKRGLFVFPLHSRMTGARYPYLWMSIAQ ENGWHVLIDACALGPKDMDSFGLSLFRPDFLICSFYKVFGENPSGFACLFAKKSTVSV LETSTSSGMVGLIPAEKLFRSVTESSGTDSEVEQTSKPNLLVDKPATPSSISGPIPVQ ASQSGRFEVGKTYEIQHADIAEKLKGLETTEISESEKAVDIIQEDYLKQEGEVECRGL DQVDSLGLVTISNRARCLINWLVNALLKLQHPNTKGIPLVRIYGPKIKFDRGPAIAFN VFDWKGEKVEPVLVQKLADRSNISLSYGFLHHICFTDKYQEEKDKVIERRSNEAKGLD GNKGKDKNDMGISVVTAALGFLANFEDIYKLWAFIAQFLDADFVEKERWRYTALNQKT FEV" mobile_element 25978341..25980053 /note="source:CACAO_M_E58877_F5_scaffold_9 4338 5625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25979382..25980471) /note="source:scaffold_2_CACTA_0252 1078 2090" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25980130..25980626 /note="source:CACAO_M_E58877_F5_scaffold_9 5047 5561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25987288..25988907 /note="source:CACAO_M_E12044_F76_scaffold_2 12887 14508" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25989008..25991784 /note="source:INTACT1427F_F390_scaffold_9-int 10418 13206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25991885..25993689 /note="source:INTACT1427F_F390_scaffold_9-int 13571 15357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25993791..25995037 /note="source:CACAO_M_E12044_F76_scaffold_2 19161 19984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25994356..25995451) /note="source:scaffold_2_CACTA_0252 1078 2102" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25995133..25995613 /note="source:CACAO_M_E12044_F76_scaffold_2 5076 5575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25995750..25996023 /note="source:CACAO_M_E12044_F76_scaffold_2 20347 20694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25996024..25996434) /note="source:CACAO_M_E44210_F112_scaffold_5 10012 10418" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25996435..25996465 /note="source:CACAO_M_E12044_F76_scaffold_2 20695 20735" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25997585..26000122) /locus_tag="TCM_015065" /note="dbxref CacaoGD:Thecc1EG015065" mRNA complement(join(25997585..25998489,25999442..26000122)) /locus_tag="TCM_015065" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(join(25998413..25998489,25999442..25999694)) /locus_tag="TCM_015065" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23057.1" /translation="MYITGLIVSLMPAYVASVAVYGIRFLMSSFYQLGSIFGRTLISN WIIINSYVFGLMIEGKQLFERNPPIEMLPSSTKTRFNFSNYSGKIQSDFKINQEYCAA RPGMGRL" gene complement(26001816..26005163) /locus_tag="TCM_015066" /note="dbxref CacaoGD:Thecc1EG015066" mRNA complement(join(26001816..26002191,26002335..26002876, 26002992..26003389,26003617..26004273,26004389..26004481, 26004679..26005163)) /locus_tag="TCM_015066" /product="Glucose-methanol-choline (GMC) oxidoreductase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014326" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015068t1" /inference="similar to AA sequence:ricco:30147.m014326" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6731t1" CDS complement(join(26002143..26002191,26002335..26002876, 26002992..26003389,26003617..26004273,26004389..26004464)) /locus_tag="TCM_015066" /note="dbxref ricco:30147.m014326; paralog of Thecc1EG015068t1" /codon_start=1 /product="Glucose-methanol-choline (GMC) oxidoreductase family protein, putative" /protein_id="EOY23058.1" /db_xref="TAIR:AT5G51950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ99" /translation="MGLGSSMFLAVLVFVAHFHFCYAVKEFSFAAPYYSFVQESTSAP QVSFYDYIIIGGGTAGCPLAATLSASANILVLERGGSPYANPGKSDKENFFPNLLDHS PGSYSQTFISEDGVYNSRARVLGGGSVINAGFYSHAEADFLKQAGLNEALVNHSYQWV EKKVAFKPPLLQWQSALRNGLLEAGVLPNNGFTYDHVYGTKVGGTIFDTDGHRHTAAD LLEYANPLNIKVYLYATVQKIIFSTKVFSRPRADGVIFEDAMGVRHSAFLTRDSKSEV ILAAGALGSPQILMLSGVGPAHQLEALGIKVVMDQPLVGQGMVDNPLNVLFIPSPLPV ELSLVSIVGITRFDSYIEACSGVSFAPTWTQRVAKELASILNQTEESSMSIFQEAIAN SRSFLNTRIKGGIVFEKVKNPTSRGHLELRSTNPHDNPKVTFNYFQAPEDLRKCVQAM KTVINAINSEAFSNFRYKILSTEALLNLIARLPLNLRPKHLTSAFSLEQFCIDTVMTI WHYHGGCLVGSVVDKDYKVHGVDALRIIDGSTFTRSPGTNPQATVMMLGRYMGLRILE ERHFLKK" mobile_element 26002951..26004282 /note="source:INTACT383F_F354_scaffold_3-int 2676 4005" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 26004276..26004499 /note="source:INTACT383F_F354_scaffold_3-int 4784 5003" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 26004658..26004700 /note="source:INTACT383F_F354_scaffold_3-int 233 275" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 26009759..26010109 /note="source:CACAO_M_E13038_F22_scaffold_3 12382 12730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26012070..26012530) /note="source:INTACT61_F128_scaffold_2-int 2232 2668" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26013283..26014350) /note="source:INTACT61_F128_scaffold_2-int 1 1092" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26014764..26016482) /locus_tag="TCM_015067" /note="dbxref CacaoGD:Thecc1EG015067" mRNA complement(join(26014764..26014942,26015913..26016482)) /locus_tag="TCM_015067" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036696t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(26014896..26014942,26015913..26016384)) /locus_tag="TCM_015067" /note="paralog of Thecc1EG036696t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23059.1" /translation="MDATIFEIAGEKWLGAGFVVRNAAREVELAGTGRMLTGQTVEEA ELAALVWSLSCCQKENIMIKEIEMDCKVVVDWIKGRHLSGILGHIVEDCLNLMVSIDY DAILHCPRKVNEMAHLLAKRAKNMSEEVVAWCDLSHMPDDIQLVIVREARSSFEDGDE DPDLCNKFKVQS" mobile_element complement(26019609..26020139) /note="source:CACAO_M_E11925_F316_scaffold_2 7386 7925" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(26020606..26020793) /note="source:CACAO_M_E157_F76_scaffold_1 4293 4499" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26020769..26020838) /note="source:CACAO_M_E4396_F76_scaffold_2 4279 4345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26020832..26022410) /note="source:INTACT459_F220_scaffold_4-int 5646 7260" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(26025538..26025660) /note="source:CACAO_M_E157_F76_scaffold_1 2495 2617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26025681..26025931) /note="source:CACAO_M_S_E5464_F76_scaffold_1 2135 2380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26025933..26026736) /note="source:CACAO_M_S_E119572_F76_scaffold_9 1207 1990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26030903..26031858 /note="source:CACAO_M_S_E66657_F76_scaffold_5 7304 8270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26031859..26032183) /note="source:INTACT459_F220_scaffold_4-int 123 1210" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26036704..26037533 /note="source:CACAO_on_E499_scaffold_3 1 830" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(26037551..26042059) /locus_tag="TCM_015068" /note="dbxref CacaoGD:Thecc1EG015068" mRNA complement(join(26037551..26037879,26037985..26038502, 26038618..26039015,26040403..26041044,26041735..26042059)) /locus_tag="TCM_015068" /product="Glucose-methanol-choline (GMC) oxidoreductase family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G51950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015066t1" /inference="similar to AA sequence:ricco:30147.m014326" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6743t1" CDS complement(join(26037828..26037879,26037985..26038502, 26038618..26039015,26040403..26041044,26041735..26041873)) /locus_tag="TCM_015068" /note="dbxref ricco:30147.m014326; paralog of Thecc1EG015066t1" /codon_start=1 /product="Glucose-methanol-choline (GMC) oxidoreductase family protein, putative" /protein_id="EOY23060.1" /db_xref="TAIR:AT3G56060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ99" /translation="MDFSCFIRELFGSKVRKCYMHLESRKYPTVFLVAVFALHHFCHA EKAPYYSFVQESTSAPPVSFHDYIIVGGGTAGCPLAATLSESANVLVLERGGSPYVNP SKTDEANLFPTLFDPSPNSYAQAFVSEDGVYNHRARVLGGGSVINAGFYSHAETDFVK EAGLDEALVNDSYQWVEKEVVFEPPVLQWQSAVRDGLLEAGVLPYNGFTYDHIYGTKI GATIFDMDGHRHSAADLLEYADPKKIKVYLHAKVPKIILTTEIGSRARAKGVIFEDAL GVRHEAFLTEDSNIEIILAAGAIGSPQLLMLSGVGPAHHLKALGMKVLIDQPMVGQGM ADNPLNGLYIPSPLPVELSLASVVGITRFGNYIEAISGLNLAPSWIQWTSKISPTILN QIESKTKIGSFLVNTRIKGGIIIDKVKGPISTGHLELRSKNPNDTPKVWFNYFQVPED LRKCVQGIQTILKVVDSKAFSKFRYKTISTQDLLNLVAALPLNLRPRHLNAAISLEQY CIDTVMTMWHYHGGCHVGKVVDQDYRVLGVDGLRVVDGSTFNFSPGTNPQSTVMMLGR YMGVRIQQDRHSYKRK" mobile_element 26040367..26041050 /note="source:INTACT383F_F354_scaffold_3-int 3303 3987" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(26042662..26045065) /locus_tag="TCM_015069" /note="dbxref CacaoGD:Thecc1EG015069" mRNA complement(join(26042662..26043115,26044036..26044369, 26044463..26044634,26044769..26045065)) /locus_tag="TCM_015069" /product="Glucose-methanol-choline (GMC) oxidoreductase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015066t1" /inference="similar to AA sequence:ricco:30147.m014326" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2634t1" CDS complement(join(26042912..26043115,26044036..26044369, 26044463..26044634,26044769..26044880)) /locus_tag="TCM_015069" /note="dbxref ricco:30147.m014326; paralog of Thecc1EG015066t1" /codon_start=1 /product="Glucose-methanol-choline (GMC) oxidoreductase family protein, putative" /protein_id="EOY23061.1" /db_xref="TAIR:AT1G12570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TMY7" /translation="MTSLAAKATQNMVSKSLIFLALVFVAYFHFNFCYAEKAPYYSFL QESTSAPQVSFYDYIIIGGGTSGCPLAATLSASANVLVLERGGSPYVNPGNRARVLGG GSVINAGFYSHAEADFLKQAGLNEALVNHSYQWVETKVAFKPPMLQWQSALRNGLLEA GVLPDNGFTHDHVHGTKVGGTIFDTGGHKHTAADLLEYAKSTFHKWSAAAVGWRLGVI FEDATGRKQSAFLTKDSKSEVISSAGTVTDVERCWSRPPTRGGDGPSRGGPRDGC" mobile_element 26043237..26043572 /note="source:CACAO_on_E203_scaffold_7 4790 5124" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26044055..26044658 /note="source:INTACT383F_F354_scaffold_3-int 3407 4005" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 26044666..26049099 /note="source:INTACT383F_F354_scaffold_3-int 1 4434" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(26046749..26048525) /locus_tag="TCM_015070" /note="dbxref CacaoGD:Thecc1EG015070" mRNA complement(join(26046749..26047026,26047323..26047563, 26047672..26047779,26048010..26048055,26048138..26048525)) /locus_tag="TCM_015070" /product="Glucose-methanol-choline (GMC) oxidoreductase family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015066t1" /inference="similar to AA sequence:ricco:30147.m014326" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage" CDS complement(join(26046891..26047026,26047323..26047563, 26047672..26047779,26048010..26048055,26048138..26048401)) /locus_tag="TCM_015070" /note="dbxref ricco:30147.m014326; paralog of Thecc1EG015066t1" /codon_start=1 /product="Glucose-methanol-choline (GMC) oxidoreductase family protein" /protein_id="EOY23062.1" /db_xref="TAIR:AT5G51950.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYV8" /translation="MESTIAEHAFLVADQSLMQGFTHMLKADFLKQAGLSEALVNHSY QWVEKKVAFKPPMLQWQSALRNGLLEAGVLPDNGFTYDHVYGTKVYFYATVQKIIFST KVFSRPRADGVIFEDAMGVRLWAFLTRDSKSEVILAAGMVDNPLNILFIPSRLPVELS LVSIVGITRFDSYIVACSGVSFAPSWTQRVARELASILNQVVFPSFEALWCLSFTGKI FSTKSDGEHPLVPRSPGKHLIGVLKGSTCRGIDAPLPWEALVVMVD" mobile_element 26049200..26049768 /note="source:INTACT383F_F354_scaffold_3-int 4435 5003" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 26049923..26051540 /note="source:INTACT383F_F354_scaffold_3-int 233 1791" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(26052460..26054117) /locus_tag="TCM_015071" /note="dbxref CacaoGD:Thecc1EG015071" mRNA complement(join(26052460..26052521,26053039..26053656, 26053954..26054117)) /locus_tag="TCM_015071" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage" CDS complement(join(26053425..26053656,26053954..26054051)) /locus_tag="TCM_015071" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23063.1" /translation="MNFSIFCNGLILYYKVKGSLAMRSEMELNFQPKRRKTVQRLNEE TSKTDKEGGRDVEIEFANIEVRLGEEVDWGFQSQTQLEEENPKCETKSNNKDRAGPHE PRSSEDH" mobile_element 26053847..26053903 /note="source:INTACT383F_F354_scaffold_3-int 1693 1755" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(26055277..26056411) /locus_tag="TCM_015072" /note="dbxref CacaoGD:Thecc1EG015072" mRNA complement(join(26055277..26055593,26056029..26056411)) /locus_tag="TCM_015072" /product="Peptidoglycan-binding LysM domain-containing protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014324" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005441t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13730.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6762t1" CDS complement(26056031..26056366) /locus_tag="TCM_015072" /note="paralog of Thecc1EG005441t1" /codon_start=1 /product="Peptidoglycan-binding LysM domain-containing protein" /protein_id="EOY23064.1" /db_xref="Phytozome:POPTR_0015s13730.1" /db_xref="TAIR:AT5G62150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IC84" /translation="MLSSSSSSKTMKKSTALVDAASWYCAVALLALILIASIRANSAS DEPVRGSQLLNRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVLK IIPSTGRKL" gene 26057829..26062857 /locus_tag="TCM_015073" /note="dbxref CacaoGD:Thecc1EG015073" mRNA join(26057829..26058215,26060214..26062857) /locus_tag="TCM_015073" /product="Pentatricopeptide repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014323" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027267t1" /inference="similar to AA sequence:ricco:30147.m014323" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2200t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6757t1" CDS 26060473..26062323 /locus_tag="TCM_015073" /note="dbxref ricco:30147.m014323; paralog of Thecc1EG027267t1" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative" /protein_id="EOY23065.1" /db_xref="TAIR:AT2G29760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9I2" /translation="MKLARHISRRFTCFSTPLKPERVTKNPLSINAAKELHAHLIRTQ RHEDPFSISPVIRAYSLAPSHLHKAHHVFYQTKEPTMFNFNHMIRGFSQSNVPNEAIK MYNQMYYLQGFPGDIMTFIFVFKACARVSDVANGQKFHVHAVKLGFDSYLFVANALIH MYSCCGDLGFARKVFDTMEERDIVSWNSLICGYSQCKKFKELLGSFRAMQEANVKADA VTMVKVILACCYTDNMNLADSMFKYIEENCVHIDVYLGNTLIDMYGKRGLVNLARELF DRMLERNVVSWNALIKGYMKVGDFIEARKVFDNMKQRDVISWTCMITGYSQANQFTGA LNLFQDMMAAKVVPDEITVASVLSACANLGALDVGLAIHDYICKHGIRADVYVGNSLI DMYCKCGVVDKALEVFHDMKEKDSVSWTSVISGLAVNGFADSALEFFSQMLKEGVRPT HGCFLGILLACTHAGLVDKGLQYFETMEKVHGLTPEMKHYGCVVDLLSRYGYLERAYQ FIRTMPIHPDVVVWRILLNACKLHGNVVLAEIVTNKLLELDPSNSGNYVLLSNTYASS DRWDDATKMRELMEGNNVQKPSGWSSIEAKRMTSSISGELHFPNFKGVIP" gene complement(26062890..26065855) /locus_tag="TCM_015074" /note="dbxref CacaoGD:Thecc1EG015074" mRNA complement(join(26062890..26063296,26063550..26063737, 26063836..26064126,26064217..26064453,26064547..26064614, 26065181..26065855)) /locus_tag="TCM_015074" /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s13780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015075t3" /inference="similar to AA sequence:Phytozome:POPTR_0012s13780.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03452t00001" mRNA complement(join(26062890..26063296,26063550..26064126, 26064217..26064453,26064547..26064614,26065181..26065855)) /locus_tag="TCM_015074" /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s13780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015075t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s13780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:PASA:2:TSA:puevd3b014560t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g03452t00001" CDS complement(join(26063104..26063296,26063550..26063737, 26063836..26064126,26064217..26064453,26064547..26064614, 26065181..26065568)) /locus_tag="TCM_015074" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015075t3" /codon_start=1 /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 1" /protein_id="EOY23066.1" /db_xref="Phytozome:POPTR_0012s13780.1" /db_xref="TAIR:AT5G51970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PSI9" /translation="MVPNESLLQRTIWGFPICIILFMIRAFEELNYNTRVDVDHLETV WKDQDATGCFEEDQNVDSAYLKRIRQCEVLTEREREREREAETKISEMAHVAQAKAGQ DDGEKNMAAWLLGIKTLKIQPYLLPPLGPQDVKVRIKALGICGSDVHHFETMRCANFI VKKPMVIGHECAGIIEEVGSEVKSLAVGDRVALEPGISCQRCGICRDGRYNLCPEMKF FGSPPTNGSLANKVVHPANLCFKLPDTVSLEEGAMCEPLSVGVHACRRAGICPDTNVL IMGAGPIGLVTLLAARAFGAPRIVIGDVDDCRLSIAKNLGADEIVQVSTNIQDVGEEV VKIQNAMSSRIDVSFDCVGFNKTMSTALRATGAGGKVCLIGLAQSEMTIPLTPAAVRE IDVFGIFRYRNTWPLCIEFLRTGKIDVKPLITHRFGFSQKGIEDAFRTSAAGGNAIKV MFNL" CDS complement(join(26063782..26064126,26064217..26064453, 26064547..26064614,26065181..26065568)) /locus_tag="TCM_015074" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015075t1" /codon_start=1 /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 2" /protein_id="EOY23067.1" /db_xref="Phytozome:POPTR_0012s13780.1" /db_xref="TAIR:AT5G51970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PSI9" /translation="MVPNESLLQRTIWGFPICIILFMIRAFEELNYNTRVDVDHLETV WKDQDATGCFEEDQNVDSAYLKRIRQCEVLTEREREREREAETKISEMAHVAQAKAGQ DDGEKNMAAWLLGIKTLKIQPYLLPPLGPQDVKVRIKALGICGSDVHHFETMRCANFI VKKPMVIGHECAGIIEEVGSEVKSLAVGDRVALEPGISCQRCGICRDGRYNLCPEMKF FGSPPTNGSLANKVVHPANLCFKLPDTVSLEEGAMCEPLSVGVHACRRAGICPDTNVL IMGAGPIGLVTLLAARAFGAPRIVIGDVDDCRLSIAKNLGADEIVQVSTNIQVNFIII WSRSLFRLHVV" gene 26066224..26069769 /locus_tag="TCM_015075" /note="dbxref CacaoGD:Thecc1EG015075" mRNA join(26066224..26066538,26066684..26066751, 26067148..26067376,26068176..26068466,26068830..26069017, 26069266..>26069388) /locus_tag="TCM_015075" /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m014321" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015074t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400055323" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2208t8; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9126t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc372t12" mRNA join(26066224..26066538,26066684..26066751, 26067140..26067376,26068176..26068466,26068830..26069017, 26069208..26069293) /locus_tag="TCM_015075" /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014321" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015074t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s13790.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc372t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9126t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc372t12" mRNA join(26066246..26066538,26066684..26066751, 26067140..26067376,26068176..26068466,26068709..26068741, 26068830..26069017,26069266..26069769) /locus_tag="TCM_015075" /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014321" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015074t1" /inference="similar to AA sequence:ricco:30147.m014321" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9126t1" mRNA join(26066268..26066538,26066684..26066751, 26067140..26067376,26068176..26068466,26068830..26069017, 26069266..26069736) /locus_tag="TCM_015075" /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014321" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015074t1" /inference="similar to AA sequence:ricco:30147.m014321" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6776t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9126t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc372t12" CDS join(26066421..26066538,26066684..26066751, 26067140..26067376,26068176..26068466,26068709..26068741, 26068830..26069017,26069266..26069458) /locus_tag="TCM_015075" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014321; paralog of Thecc1EG015074t1" /codon_start=1 /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 1" /protein_id="EOY23068.1" /db_xref="TAIR:AT5G51970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67XB8" /translation="MGKGGKSHEEASIGEEENMAAWLVGLNTLKIQPFKLPPLGPRDV RVRMKAVGICGSDVHYLKTLRLADFVVKEPMVIGHECAGIIEEVGGEVKNLVPGDRVA LEPGISCWRCDLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEE GAMCEPLSVGVHACRRANIGPGKNVLVMGAGPIGLVTMLAARAFGAPRIVVVDVDDNR LSVAKDLGADGVVKVSTNMQEFGDFDIAQLKDVPEEVERICKVMGAGVDVSFDCAGFN KTMSTALSATRAGGKVCLVGMGHSEMTVPLTPAAAREVDIIGIFRYKNTWPLCLEFLR SGKIDVKPLITHRYGFSQKEVEEAFETSARGGNAIKVMFNL" CDS join(26066421..26066538,26066684..26066751, 26067140..26067376,26068176..26068466,26068830..26069017, 26069266..26069458) /locus_tag="TCM_015075" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014321; paralog of Thecc1EG015074t1" /codon_start=1 /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 3" /protein_id="EOY23070.1" /db_xref="TAIR:AT5G51970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67XB8" /translation="MGKGGKSHEEASIGEEENMAAWLVGLNTLKIQPFKLPPLGPRDV RVRMKAVGICGSDVHYLKTLRLADFVVKEPMVIGHECAGIIEEVGGEVKNLVPGDRVA LEPGISCWRCDLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEE GAMCEPLSVGVHACRRANIGPGKNVLVMGAGPIGLVTMLAARAFGAPRIVVVDVDDNR LSVAKDLGADGVVKVSTNMQDVPEEVERICKVMGAGVDVSFDCAGFNKTMSTALSATR AGGKVCLVGMGHSEMTVPLTPAAAREVDIIGIFRYKNTWPLCLEFLRSGKIDVKPLIT HRYGFSQKEVEEAFETSARGGNAIKVMFNL" CDS join(26066421..26066538,26066684..26066751, 26067140..26067376,26068176..26068466,26068830..26069017, 26069208..26069274) /locus_tag="TCM_015075" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015074t1" /codon_start=1 /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 2" /protein_id="EOY23069.1" /db_xref="Phytozome:POPTR_0012s13790.1" /db_xref="TAIR:AT5G51970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67XB8" /translation="MGKGGKSHEEASIGEEENMAAWLVGLNTLKIQPFKLPPLGPRDV RVRMKAVGICGSDVHYLKTLRLADFVVKEPMVIGHECAGIIEEVGGEVKNLVPGDRVA LEPGISCWRCDLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEE GAMCEPLSVGVHACRRANIGPGKNVLVMGAGPIGLVTMLAARAFGAPRIVVVDVDDNR LSVAKDLGADGVVKVSTNMQDVPEEVERICKVMGAGVDVSFDCAGFNKTMSTALSATR AGGKVCLVGMGHSEMTVPLTPAAARCVWHCALSPPKGDGFHKMQGG" CDS join(26066735..26066751,26067148..26067376, 26068176..26068466,26068830..26069017,26069266..>26069386) /locus_tag="TCM_015075" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG015074t1" /codon_start=1 /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 4" /protein_id="EOY23071.1" /db_xref="Phytozome:PGSC0003DMP400055323" /db_xref="TAIR:AT5G51970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67XB8" /translation="MFTISRLADFVVKEPMVIGHECAGIIEEVGGEVKNLVPGDRVAL EPGISCWRCDLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEG AMCEPLSVGVHACRRANIGPGKNVLVMGAGPIGLVTMLAARAFGAPRIVVVDVDDNRL SVAKDLGADGVVKVSTNMQDVPEEVERICKVMGAGVDVSFDCAGFNKTMSTALSATRA GGKVCLVGMGHSEMTVPLTPAAAREVDIIGIFRYKNTWPLCLEFLRSGKIDVKPLITH RYGFSQ" gene complement(26069800..26074928) /locus_tag="TCM_015076" /note="dbxref CacaoGD:Thecc1EG015076" mRNA complement(join(26069800..26070353,26070465..26070562, 26071956..26072009,26072155..26072214,26072312..26072431, 26072590..26072736,26073129..26073230,26073333..26073422, 26074000..26074095,26074196..26074841)) /locus_tag="TCM_015076" /product="Zinc finger WD40 repeat protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014320" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001774t1" /inference="similar to AA sequence:ricco:30147.m014320" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6806t3" mRNA complement(join(26070018..26070353,26070465..26070561, 26073128..26073230,26073333..26073422,26074000..26074095, 26074196..26074928)) /locus_tag="TCM_015076" /product="Zinc finger WD40 repeat protein 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014320" /inference="similar to AA sequence:frave:gene13339" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc608t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6806t3" CDS complement(join(26070218..26070353,26070465..26070562, 26071956..26072009,26072155..26072214,26072312..26072431, 26072590..26072736,26073129..26073230,26073333..26073422, 26074000..26074095,26074196..26074636)) /locus_tag="TCM_015076" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014320; paralog of Thecc1EG001774t1" /codon_start=1 /product="Zinc finger WD40 repeat protein 1 isoform 1" /protein_id="EOY23072.1" /db_xref="TAIR:AT4G25440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4E6" /translation="MDLDGGNRRVFNRLGGPSTAPTDSSKHQKVCYHWRAGKCNRFPC PFLHRELPAPGPAATANGSGAPKRFADDSGFSGPAARRGPNFNNNHHNSWGRMGANKV VRKTEKVCNYWVQGNCNYGDKCRFLHSWSLGEGFTMLSHLDGHQKVVSGIALPAGLDK LYTGSKDETVRAWDTNSGQCTCVINLGGEVGCMISEGPWLFVGIPNVVKAWNTQTNYE LSLTGPVGQVYAMVVGNDLLFAGTQDGTILAWKFNAITNSFEAAASLKSHTLAVVSLV VGANRLYSGSMDHSIRVWSLETLQCLQTLTEHHNVVMSLLCWEQFLLSCSLDQTIKVW VATENGNLEVTYTHNEEHFMLVIRGGSDWRMEGEAVGLLNLRGMHDSESKPVLLCTCN DNSVRLYDLPSFSERGKIFAKQEIRAIEVGPGGLFFTGDGTGYRVWKWAQPIATS" CDS complement(join(26070218..26070353,26070465..26070561, 26073128..26073230,26073333..26073422,26074000..26074095, 26074196..26074636)) /locus_tag="TCM_015076" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene13339" /codon_start=1 /product="Zinc finger WD40 repeat protein 1 isoform 2" /protein_id="EOY23073.1" /db_xref="TAIR:AT4G25440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNZ1" /translation="MDLDGGNRRVFNRLGGPSTAPTDSSKHQKVCYHWRAGKCNRFPC PFLHRELPAPGPAATANGSGAPKRFADDSGFSGPAARRGPNFNNNHHNSWGRMGANKV VRKTEKVCNYWVQGNCNYGDKCRFLHSWSLGEGFTMLSHLDGHQKVVSGIALPAGLDK LYTGSKDETVRAWDTNSGQCTCVINLGGEVGCMISEGPWLFVGIPNVVKAWNTQTNYE LSLTGPVGQVYAMVVGNDLLFAGTQGLLNLRGMHDSESKPVLLCTCNDNSVRLYDLPS FSERGKIFAKQEIRAIEVGPGGLFFTGDGTGYRVWKWAQPIATS" gene complement(26076863..26079109) /locus_tag="TCM_015077" /note="dbxref CacaoGD:Thecc1EG015077" mRNA complement(join(26076863..26077913,26078697..26079109)) /locus_tag="TCM_015077" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g07880.1" /inference="similar to AA sequence:Phytozome:GSVIVT01010640001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02493t00001" CDS complement(26077415..26077873) /locus_tag="TCM_015077" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23074.1" /db_xref="Phytozome:GSVIVT01010640001" /db_xref="TAIR:AT5G43050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4E7" /translation="MALMILPSASLLKFRLSPQTRLSRRKLFISRSSPGFLNIRAVQE NGSPRRLVDIIRLVPDITRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDV IAAVLCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS" gene 26079104..26082730 /locus_tag="TCM_015078" /note="dbxref CacaoGD:Thecc1EG015078" mRNA join(26079104..26079223,26079780..26080739, 26080867..26081007,26081559..26081957,26082047..26082709) /locus_tag="TCM_015078" /product="Phosphoenolpyruvate carboxylase-related kinase 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g32390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016169t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13790.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02606t00002; inference alignment:Newbler:10:TSA:cgbaB_g04538t00001" mRNA join(26079165..26079223,26079780..26080739, 26080867..26081163,26081559..26081957,26082053..26082730) /locus_tag="TCM_015078" /product="Phosphoenolpyruvate carboxylase-related kinase 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g32390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016169t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13790.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc496t1_C2; inference alignment:Newbler:10:TSA:cgbaB_g04538t00001" mRNA join(26079165..26079223,26079780..26080739, 26081559..26081957,26082047..26082730) /locus_tag="TCM_015078" /product="Phosphoenolpyruvate carboxylase-related kinase 1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g32390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016169t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13790.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc496t4_C2; inference alignment:Newbler:10:TSA:cgbaB_g04538t00001" mRNA join(26079193..26079223,26079780..26080739, 26080867..26081163,26081559..26081957,26082047..26082691) /locus_tag="TCM_015078" /product="Phosphoenolpyruvate carboxylase-related kinase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g32390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016169t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13790.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04538t00001; inference alignment:Newbler:10:TSA:cgbaB_g04538t00001" CDS join(26080151..26080739,26080867..26081163, 26081559..26081957,26082047..26082318) /locus_tag="TCM_015078" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016169t1" /codon_start=1 /product="Phosphoenolpyruvate carboxylase-related kinase 1 isoform 1" /protein_id="EOY23075.1" /db_xref="Phytozome:POPTR_0015s13790.2" /db_xref="TAIR:AT1G12580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HP71" /translation="MAVAKSNSISETSKQPCNCFKVASLSETILETEQTANLKDRYIL GEQLGWGQFGVIRLCSDKLTREVLACKSISKDRLVTSDDARSVKLEIEIMTRLSGHPN VVDLKAVYEDEDYVHLVMELCAGGELFHRLEKYGRFSEAEARVLFRHLMQVVLYCHEI GVVHRDLKPENILLATKASSSPIKLADFGLATYIEPGQCLHGTVGSPFYIAPEVLVGG YNQAADVWSAGVILYILLSGTPPFWGKTKSRIFDAVRAADLQFPSDPWDRISDSAKNL VRGMLNTDPFQRLTALHVLDHLWMKNDESCHEESSELIYQSCGEREIGSGTFSLSRDQ DISFGAGSPTICGVQSPALTCRTSFSSFLVEPSTPCFPLGGFSFCNGNSDTLELSSPV PSMPSFAFFSPCSVVEQENCKLDFSTTVTRMETTYGDAGLDKVLVLPDSSPCCGPEAR EMENKAAEFRRTGGSSGSRMLAFHSKRNRTIGHGEREQLDFMVSESVIRWASCTNLPT ATSLRSSLVC" CDS join(26080151..26080739,26080867..26081163, 26081559..26081957,26082053..26082318) /locus_tag="TCM_015078" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016169t1" /codon_start=1 /product="Phosphoenolpyruvate carboxylase-related kinase 1 isoform 2" /protein_id="EOY23076.1" /db_xref="Phytozome:POPTR_0015s13790.2" /db_xref="TAIR:AT1G12580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HP71" /translation="MAVAKSNSISETSKQPCNCFKVASLSETILETEQTANLKDRYIL GEQLGWGQFGVIRLCSDKLTREVLACKSISKDRLVTSDDARSVKLEIEIMTRLSGHPN VVDLKAVYEDEDYVHLVMELCAGGELFHRLEKYGRFSEAEARVLFRHLMQVVLYCHEI GVVHRDLKPENILLATKASSSPIKLADFGLATYIEPGQCLHGTVGSPFYIAPEVLVGG YNQAADVWSAGVILYILLSGTPPFWGKTKSRIFDAVRAADLQFPSDPWDRISDSAKNL VRGMLNTDPFQRLTALHVLDHLWMKNDESCHEESSELIYQSCGEREIGSGTFSLSRDQ DISFGAGSPTICGVQSPALTCRTSFSSFLVEPSTPCFPLGGFSFCNGNSDTLELSSPV PSMPSFAFFSPCSVVEQENCKLDFSTTVTRMETTYGGLDKVLVLPDSSPCCGPEAREM ENKAAEFRRTGGSSGSRMLAFHSKRNRTIGHGEREQLDFMVSESVIRWASCTNLPTAT SLRSSLVC" CDS join(26080151..26080739,26080867..26081007, 26081559..26081957,26082047..26082318) /locus_tag="TCM_015078" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG016169t1" /codon_start=1 /product="Phosphoenolpyruvate carboxylase-related kinase 1 isoform 3" /protein_id="EOY23077.1" /db_xref="Phytozome:POPTR_0015s13790.2" /db_xref="TAIR:AT1G12580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HP71" /translation="MAVAKSNSISETSKQPCNCFKVASLSETILETEQTANLKDRYIL GEQLGWGQFGVIRLCSDKLTREVLACKSISKDRLVTSDDARSVKLEIEIMTRLSGHPN VVDLKAVYEDEDYVHLVMELCAGGELFHRLEKYGRFSEAEARVLFRHLMQVVLYCHEI GVVHRDLKPENILLATKASSSPIKLADFGLATYIEPGQCLHGTVGSPFYIAPEVLVGG YNQAADVWSAGVILYILLSGTPPFWDHLWMKNDESCHEESSELIYQSCGEREIGSGTF SLSRDQDISFGAGSPTICGVQSPALTCRTSFSSFLVEPSTPCFPLGGFSFCNGNSDTL ELSSPVPSMPSFAFFSPCSVVEQENCKLDFSTTVTRMETTYGDAGLDKVLVLPDSSPC CGPEAREMENKAAEFRRTGGSSGSRMLAFHSKRNRTIGHGEREQLDFMVSESVIRWAS CTNLPTATSLRSSLVC" CDS join(26080151..26080739,26081559..26081957, 26082047..26082318) /locus_tag="TCM_015078" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG016169t1" /codon_start=1 /product="Phosphoenolpyruvate carboxylase-related kinase 1 isoform 4" /protein_id="EOY23078.1" /db_xref="Phytozome:POPTR_0015s13790.1" /db_xref="TAIR:AT1G12580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HP71" /translation="MAVAKSNSISETSKQPCNCFKVASLSETILETEQTANLKDRYIL GEQLGWGQFGVIRLCSDKLTREVLACKSISKDRLVTSDDARSVKLEIEIMTRLSGHPN VVDLKAVYEDEDYVHLVMELCAGGELFHRLEKYGRFSEAEARVLFRHLMQVVLYCHEI GVVHRDLKPENILLATKASSSPIKLADFGLATYIEPDHLWMKNDESCHEESSELIYQS CGEREIGSGTFSLSRDQDISFGAGSPTICGVQSPALTCRTSFSSFLVEPSTPCFPLGG FSFCNGNSDTLELSSPVPSMPSFAFFSPCSVVEQENCKLDFSTTVTRMETTYGDAGLD KVLVLPDSSPCCGPEAREMENKAAEFRRTGGSSGSRMLAFHSKRNRTIGHGEREQLDF MVSESVIRWASCTNLPTATSLRSSLVC" gene 26083032..26084164 /locus_tag="TCM_015079" /note="dbxref CacaoGD:Thecc1EG015079" mRNA join(26083032..26083759,26083851..26084164) /locus_tag="TCM_015079" /product="ATP-dependent Clp protease ATP-binding subunit clpX" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s13830.1" /inference="similar to AA sequence:ricco:30147.m014316" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6771t1" CDS join(26083316..26083759,26083851..26084126) /locus_tag="TCM_015079" /note="dbxref ricco:30147.m014316" /codon_start=1 /product="ATP-dependent Clp protease ATP-binding subunit clpX" /protein_id="EOY23079.1" /db_xref="TAIR:AT5G62140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T3B5" /translation="MGCKLNSLEPPILCQVPARKPRFRTRLIAFSSYAPNKGEAVSTT KSIETQLPKTDVYSISFKTLGACKLGISRYPDFEYNAEGGAGTGTGTKINDRNELSVS FDLKTLYVPPLTSATTKFLGLPLPPFLKIDIVPQLFQGNINQESGKVDLEFLAKFCFS VGSIYKAPPLLVKTVLTSEESKGKIRSGRGERLDNKGNCKLVGVASVDPIDDFFMNSL LGLPTECLAKLNAVITLSNSS" gene complement(26084194..26090489) /locus_tag="TCM_015080" /note="dbxref CacaoGD:Thecc1EG015080" mRNA complement(join(26084194..26085246,26085465..26085521, 26085659..26085715,26085795..26085929,26086553..26086642, 26086709..26086857,26087261..26087540,26087620..26087682, 26087861..26087989,26088103..26088153,26088340..26088440, 26088974..26089064,26089379..26089480,26089563..26089586, 26089688..26089875,26089953..26090489)) /locus_tag="TCM_015080" /product="Non-intrinsic ABC protein 8 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13333" /inference="similar to AA sequence:Phytozome:GSVIVT01010634001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1203t5" mRNA complement(join(26084736..26085246,26085465..26085524, 26085659..26085715,26085794..26085929,26086552..26086642, 26086709..26086857,26087261..26087540,26087620..26087682, 26087861..26087989,26088103..26088153,26088340..26088440, 26088974..26089064,26089379..26089480,26089563..26089586, 26089688..26089875,26089953..>26090287)) /locus_tag="TCM_015080" /product="Non-intrinsic ABC protein 8 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13333" /inference="similar to AA sequence:Phytozome:GSVIVT01010634001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6798t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1203t5" CDS complement(join(26085010..26085246,26085465..26085521, 26085659..26085715,26085795..26085929,26086553..26086642, 26086709..26086857,26087261..26087540,26087620..26087682, 26087861..26087989,26088103..26088153,26088340..26088440, 26088974..26089064,26089379..26089480,26089563..26089586, 26089688..26089875,26089953..26090373)) /locus_tag="TCM_015080" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Non-intrinsic ABC protein 8 isoform 1" /protein_id="EOY23080.1" /db_xref="Phytozome:GSVIVT01010634001" /db_xref="TAIR:AT4G25450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPQ6" /translation="MATASASITVPLLHHLNPTRFSSSTCHARKLKLKLSLSQNSPLH QSCTFPPISLPTTTKSRRLNVSSPVSRAYIAGPPIVSEPDPKVDEPDPDIEKAEPPNL ISRRLLWGLLVRHKLRISVSVLALIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLS KVGLLYSLEPIFTVIFVVNMNTIWEKVMSTLRAQIFRRVLIQKAEFFDRYKVGELSGL LTSDLGSLKDVVSENISRDRGFRALSEVVGTICILFALSPQLAPILGLLMLFVSVSVA LYKRSTVPVFRAHGLAQASMSDCVTETFSAIRTVRSFCGEKRQMSMFGSQVLAYQKSG IKIGTFKSINESLTRVAVYISLLALYCLGGSKVKAGELSVGTVASFIGYTFTLTFAVQ GLVNTFGDLRGTFAAVERINSVISGAEIDEALAYGLEKEIQKKEVDDENIKLFISNGA FEKNQQLNSHYMSALKSASNVGRLAWSGDVCLEDVHFSYPLRPDVEILNGLNLTLKCG TVTALVGPSGAGKSTIVQLLARFYEPTSGRITVAGEDVRTFDKSEWARVVSIVNQEPV LFSVSVGENIAYGLPDDNVSKDDIIKAAKAANAHEFIISLPQGYDTLVGERGGLLSGG QRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTV QNAHQIALCSDGKIAELGTHFELLSRKGQYASLVGTQRLAFE" CDS complement(join(26085868..26085929,26086552..26086642, 26086709..26086857,26087261..26087540,26087620..26087682, 26087861..26087989,26088103..26088153,26088340..26088440, 26088974..26089064,26089379..26089480,26089563..26089586, 26089688..26089875,26089953..>26090286)) /locus_tag="TCM_015080" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Non-intrinsic ABC protein 8 isoform 2" /protein_id="EOY23081.1" /db_xref="Phytozome:GSVIVT01010634001" /db_xref="TAIR:AT4G25450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPQ6" /translation="KLKLKLSLSQNSPLHQSCTFPPISLPTTTKSRRLNVSSPVSRAY IAGPPIVSEPDPKVDEPDPDIEKAEPPNLISRRLLWGLLVRHKLRISVSVLALIGCTT CTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYSLEPIFTVIFVVNMNTIWEKVMS TLRAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKDVVSENISRDRGFRALSEVV GTICILFALSPQLAPILGLLMLFVSVSVALYKRSTVPVFRAHGLAQASMSDCVTETFS AIRTVRSFCGEKRQMSMFGSQVLAYQKSGIKIGTFKSINESLTRVAVYISLLALYCLG GSKVKAGELSVGTVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVISGAEID EALAYGLEKEIQKKEVDDENIKLFISNGAFEKNQQLNSHYMSALKSASNVGRLAWSGD VCLEDVHFSYPLRPDVEILNGLNLTLKCGTVTALVGPSGAGKSTIVQLLARFYEPTSG RITVAGEDVRTFDKSEWARVVSIVNQGTCSIFGVCWRKYRIWASRR" mRNA complement(join(26085904..26085929,26086553..26086857, 26087261..26087540,26087620..26087682,26087861..26087989, 26088103..26088153,26088340..26088440,26088974..26089064, 26089379..26089480,26089563..26089586,26089688..26089875, 26089953..26090414)) /locus_tag="TCM_015080" /product="Non-intrinsic ABC protein 8 isoform 3" /inference="alignment:exonerate-protein:2:frave:gene13333" /inference="similar to AA sequence:Phytozome:POPTR_0015s13800.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1203t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1203t5" CDS complement(join(26086703..26086857,26087261..26087540, 26087620..26087682,26087861..26087989,26088103..26088153, 26088340..26088440,26088974..26089064,26089379..26089480, 26089563..26089586,26089688..26089875,26089953..26090373)) /locus_tag="TCM_015080" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Non-intrinsic ABC protein 8 isoform 3" /protein_id="EOY23082.1" /db_xref="Phytozome:POPTR_0015s13800.2" /db_xref="TAIR:AT4G25450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPQ6" /translation="MATASASITVPLLHHLNPTRFSSSTCHARKLKLKLSLSQNSPLH QSCTFPPISLPTTTKSRRLNVSSPVSRAYIAGPPIVSEPDPKVDEPDPDIEKAEPPNL ISRRLLWGLLVRHKLRISVSVLALIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLS KVGLLYSLEPIFTVIFVVNMNTIWEKVMSTLRAQIFRRVLIQKAEFFDRYKVGELSGL LTSDLGSLKDVVSENISRDRGFRALSEVVGTICILFALSPQLAPILGLLMLFVSVSVA LYKRSTVPVFRAHGLAQASMSDCVTETFSAIRTVRSFCGEKRQMSMFGSQVLAYQKSG IKIGTFKSINESLTRVAVYISLLALYCLGGSKVKAGELSVGTVASFIGYTFTLTFAVQ GLVNTFGDLRGTFAAVERINSVISGAEIDEALAYGLEKEIQKKEVDDENIKLFISNGA FEKNQQLNSHYMSALKSASNVGRLAWSGDVCLEDVHFSYPLRPDVEILNGLNLTLKCG TVTALVGPSGAGKSTIVQLLARFYEV" gene 26090687..26093917 /locus_tag="TCM_015081" /note="dbxref CacaoGD:Thecc1EG015081" mRNA join(26090687..26091062,26091515..26091776, 26091862..26092058,26092598..26092785,26093213..26093917) /locus_tag="TCM_015081" /product="Per1-like family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032395t8" /inference="similar to AA sequence:Phytozome:GSVIVT01010633001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00230t00001" CDS join(26090959..26091062,26091515..26091776, 26091862..26092058,26092598..26092785,26093213..26093499) /locus_tag="TCM_015081" /note="paralog of Thecc1EG032395t8" /codon_start=1 /product="Per1-like family protein" /protein_id="EOY23083.1" /db_xref="Phytozome:GSVIVT01010633001" /db_xref="TAIR:AT1G16560.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q75G54" /translation="MNRMAPCGLILLFFALSFLVPSLDASEGDADPIYKACLEDCEKS GCVGETCFQHCKFSSDGKPIDGPWYLQEPLYQKWKQWDCRTDCRYHCMLAREEQRGNL GDKPVKYHGKWPFRRVYGIQEPVAVAFSALSLAIQFHGWISFFILLYYKLPLRPNKRT YYEFTGLWHIYGVLAMNFWFWSAVFHSRDVELTEKLDYSSAVALVGFSLILSILRAFD VRDEASRVMVAAPLIAFVTTHILYLNFYKLDYGLNMKVCMAMGVAQLLIWGVWAGVTS HPSRWKVWLFVVGGSLAVLLEIYEFPPYRGFVDAHALWHAASIPLTYICWSFVRDDAE FRTTTLLKKIK" gene 26094323..26095685 /locus_tag="TCM_015082" /note="dbxref CacaoGD:Thecc1EG015082" mRNA 26094323..26095685 /locus_tag="TCM_015082" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025210" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc228t8" CDS 26094848..26095183 /locus_tag="TCM_015082" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23084.1" /translation="MLSRSKCLRRLCRRLLNILRIPRSRNWKPPSGVRKVQTSRPSPQ GYRRHVVCTRRHLRSGKSPQPNPRFLVWLPHFTNPLPGVPPANSTVHRVPSLPELLSP CSLLRITRS" gene complement(26105881..26108915) /locus_tag="TCM_015083" /note="dbxref CacaoGD:Thecc1EG015083" mRNA complement(join(26105881..26107377,26107475..26107571, 26108842..26108915)) /locus_tag="TCM_015083" /product="Integrase-type DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014311" /inference="similar to AA sequence:ricco:30147.m014311" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6782t1" CDS complement(join(26106553..26107377,26107475..26107525)) /locus_tag="TCM_015083" /note="dbxref ricco:30147.m014311" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein, putative" /protein_id="EOY23085.1" /db_xref="TAIR:AT5G52020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q076D8" /translation="MFGFVKSSANSPRLCPLTNMANPSTNVPPKDQPPSTPTVQIPDP PASLVQPQDQSPKPSSASPPDNPLVRLVHSPGRTTLGQPQDQSPKSPKPSTVSTPRPV QSPGRSSSSALPGSGRHPTYRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAATAY DVAAIALKGPDTDLNFPDMILSYPKAASTSASDIRAAAASAAASRLPKPDTGSSKDSK QDQGEPENEGTTSGSCMESGSGQEFIDEEALLNFPNLLVNMAEGMLISPPRINSPPSD DSPEDSDVESLWTYT" gene 26110360..26114045 /locus_tag="TCM_015084" /note="dbxref CacaoGD:Thecc1EG015084" mRNA join(26110360..26110895,26111345..26111460, 26111561..26111649,26111746..26111820,26112020..26112130, 26112933..26113028,26113371..26114045) /locus_tag="TCM_015084" /product="TraB family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s13890.1" /inference="similar to AA sequence:frave:gene13326" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00212t00002" CDS join(26110507..26110895,26111345..26111460, 26111561..26111649,26111746..26111820,26112020..26112130, 26112933..26113028,26113371..26113637) /locus_tag="TCM_015084" /note="dbxref frave:gene13326" /codon_start=1 /product="TraB family protein" /protein_id="EOY23086.1" /db_xref="TAIR:AT5G52030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AG17" /translation="MDPLLKSSFPIVTANPKFLTPKPVKLKPFKVSIKPPPPDFDFRA DILAESSARIGKTHPQLADLAENGTLVLVEKRQFGPVPAWRTEFVEPEAIWLVGTSHI SRESAADVERVVRAVRPDNVVVELCRSRAGIMYTSNDVDNGQQLRSNMFSLSGTGFFG AVGRSINLGGQTALALRLLLALFSSKISSHVNRPFGDEFRAARKASEEIGAQIVLGDR PIEITLERAWNSLKWSEKFSLVLSVVHGITSPSLDISRNDFKEQNSENDTFQLYEQLS CSYPSLLQPLIHERDTYIAWSLKRSKAVNNCKTVVGVIGKGHMNGVIYALVSDQGNLR FRDLAGKTPSEAESNGWVEGHLRSLARDTLIGIVLWALYEQIKAAL" gene 26116688..26122190 /locus_tag="TCM_015085" /note="dbxref CacaoGD:Thecc1EG015085" mRNA join(26116688..26117018,26117636..26117688, 26118234..26118383,26118775..26119173,26119331..26119407, 26120700..26121731,26121856..26122190) /locus_tag="TCM_015085" /product="Two-component system sensor histidine kinase/response regulator, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014309" /inference="similar to AA sequence:ricco:30147.m014309" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(26116855..26117018,26117636..26117688, 26118234..26118383,26118775..26119173,26119331..26119407, 26120700..26121731,26121856..26122023) /locus_tag="TCM_015085" /note="dbxref ricco:30147.m014309" /codon_start=1 /product="Two-component system sensor histidine kinase/response regulator, putative" /protein_id="EOY23087.1" /db_xref="TAIR:AT5G07210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9G8" /translation="MASKRSISAEHSNPINSLLKVTILVVDDDSTSLAIVSAMLKEWR YEGIRKIFCLGSLYFNDLSRMLVDIVMMVATVKSPADALSTLRAKPGIDLVVTDLHMP GMNGIELQRQINREFRVPVIIMSSDEQESVMLQSLEEGAVFFIAKPVKPDDLKNVWQY AIAAKKGKSVVIEEIASTEGEAPSAGKVSKDEVRSVASVKDDKNNAKKGTKRKASRKS KDDQEDVTGSAPKKAKVVWTNSLHNKFLEALRQIGLDKAVPKKILEIMNVPGLTRENV ASHLQKYRIFLKRVAERGCFASKAFVEKILRSSFASGHPLLLKTAQEYARLAELQQKR GLTFRPEYGGYVSYQNAHNAATHGSVLFPYQNASSSNSAQRHACGQSHLLLGNQANNK RLVSGNTNPLYQGNRLGFANGSNFSLNGSLTNATNGLMNGANSRHTYQQQIQARQNFH SAGFPSQFRFGSSSLHSSNSTLGTGNIGSISTSYPTLNSSCSNNNSYAGVRLTTGGQL IEMGQTRLNGCYGSMDGTYNEEMNVAAMGNQTFGYMGQGGSSSAGLNNGANQVSPANT AANTSMLPGLDNNGGAKHYKSGHLMNNAPTFDNITPQQLGDGSLSDLLLESKNYQFPC QQQDGGDGVQSPDFLSSSIFSEIFPSLEELLNSDFSESLSLEDTAPQNEEALEKAS" mobile_element complement(26123877..26125082) /note="source:INTACT164_F159_scaffold_7-int 240 1292" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26125100..26126740) /note="source:INTACT157_F155_scaffold_1-int 12890 14525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26126741..26126995 /note="source:INTACT641_F282_scaffold_1-int 4347 6189" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26127262..26127465 /note="source:INTACT641_F282_scaffold_1-int 6377 6572" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(26127689..26127746) /note="source:INTACT556_F252_scaffold_2-int 1 521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26127747..26128206 /note="source:CACAO_on_E205_scaffold_7 4733 5186" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(26128206..26128266) /note="source:INTACT164_F159_scaffold_7-int 10146 10206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26128267..26128784 /note="source:CACAO_on_E175_scaffold_1 441 972" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(26128780..26128855) /note="source:INTACT164_F159_scaffold_7-int 10079 10154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26129730..26130527) /note="source:INTACT579_F10_scaffold_3-int 4973 5769" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26131003..26131870 /note="source:INTACT700_F304_scaffold_7-int 16257 17116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26131339..26132196 /note="source:CACAO_M_E52694_F25_scaffold_8 3855 4761" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(26132415..26132734) /note="source:CACAO_M_E44210_F112_scaffold_5 9998 10313" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(26134161..26134450) /note="source:CACAO_on_SS_E135_scaffold_10 5486 5727" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(26134771..26135256) /note="source:scaffold_9_CACTA_0945 1224 1714" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26140494..26140537) /note="source:scaffold_10_CACTA_0130 1131 1174" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26140967..26141219) /note="source:scaffold_1_CACTA_0005 6717 6966" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26141001..26141592) /note="source:CACAO_on_E172_scaffold_5 2399 2989" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26141591..26144803 /note="source:CACAO_on_E20_scaffold_3 1 3213" /mobile_element_type="transposon:TIR/hAT" gene 26142161..26144693 /locus_tag="TCM_015088" /note="dbxref CacaoGD:Thecc1EG015088" mRNA join(26142161..26142392,26142720..26143065, 26143307..26143365,26143446..26143811,26144228..26144693) /locus_tag="TCM_015088" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003341t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s14710.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS join(26143564..26143811,26144228..26144630) /locus_tag="TCM_015088" /note="paralog of Thecc1EG003341t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23088.1" /db_xref="Phytozome:POPTR_0001s14710.1" /translation="MVASDELETGRGANQVRTLQRVGDTQWSSHFHSICSLMRMFHAT CTIVKGIIDKGASYSQRGDAFATSKILASFEFIFILHLIEYLFSGFHKTRKAYFEVSI EALRDRYTHHQSFEDIKTLSELCQRLTETEKSKNYHLIDRLIHLILTLSVSTTTTERA FSAMKIVKTRLRNKMNEEFLADNLVVYIEKDIASLFNTELIIDEFESRKYRRTQLS" mobile_element complement(26144808..26145130) /note="source:CACAO_on_E614_scaffold_6 347 673" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(26145074..26145137) /note="source:scaffold_2_CACTA_0277 4402 4468" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26145241..26145251 /note="source:CACAO_M_S_E18487_F233_scaffold_3 1308 1318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26145252..26145310 /note="source:scaffold_5_CACTA_0580 7234 7292" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26145311..26145344 /note="source:CACAO_M_S_E18487_F233_scaffold_3 1319 1356" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26145626..26148719) /note="source:CACAO_M_E69938_F9_scaffold_9 3535 6354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26148623..26148754 /note="source:CACAO_M_E52694_F25_scaffold_8 5081 5214" /mobile_element_type="retrotransposon:LTR/Copia" gene 26150200..26154482 /locus_tag="TCM_015090" /note="dbxref CacaoGD:Thecc1EG015090" mRNA join(26150200..26150365,26151210..26151320, 26152802..26152914,26153012..26153250,26153361..26153996, 26154103..26154482) /locus_tag="TCM_015090" /product="Arginine/serine-rich splicing factor 35" /inference="alignment:exonerate- protein:2:ricco:30147.m014308" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005096t3" /inference="similar to AA sequence:Phytozome:POPTR_0015s13880.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9149t1" CDS join(26151215..26151320,26152802..26152914, 26153012..26153250,26153361..26153996,26154103..26154127) /locus_tag="TCM_015090" /note="paralog of Thecc1EG005096t3" /codon_start=1 /product="Arginine/serine-rich splicing factor 35" /protein_id="EOY23089.1" /db_xref="Phytozome:POPTR_0015s13880.1" /db_xref="TAIR:AT4G25500.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6R4Q7" /translation="MRPIFCGNFEYDARQSDLERLFRKYGRVERVDMKSGFAFIYMED ERDAEDAIRALDRTEFGRKGRRLRVEWTKQERGIRRPGGGSRRSSANTRPSKTLFVIN FDPYHTRTRDLERHFESYGKIVSVRIRRNFAFVQYDSQDDATRALEATNMSKLTDRVI SVEYAVRDDDERRNGYSPDRSRDRSPERGRDKRRSPSPYRRERGSPDYGRGSSRSPYR KERGSPDYGRGRSPSPYKRDRVSPEYGRGTSRSPYRRERAGADHARGSSRSPYRKERA SPENGRGPSNSPYRREKHSAENDRSPSHSPYRRERPSSDNGRGPSHSPYERDRASPEN GRGPSPSSMPEGRDSPYGGGAESPVNERYRSQSPPAEE" mobile_element complement(26156705..26156842) /note="source:CACAO_M_E12463_F12_scaffold_3 4641 4703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26156767..26156846 /note="source:scaffold_6_CACTA_0706 1413 1492" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26160388..26160711) /note="source:CACAO_MITE_S250_scaffold_10 11 334" /mobile_element_type="transposon:TIR/MITE" gene 26164591..26167133 /locus_tag="TCM_015091" /note="dbxref CacaoGD:Thecc1EG015091" mRNA 26164591..26167133 /locus_tag="TCM_015091" /product="MATE efflux family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016180t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13900.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1492t1" CDS 26164680..26166341 /locus_tag="TCM_015091" /note="paralog of Thecc1EG016180t1" /codon_start=1 /product="MATE efflux family protein" /protein_id="EOY23090.1" /db_xref="Phytozome:POPTR_0015s13900.1" /db_xref="TAIR:AT4G23030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CNU9" /translation="MCQLTPSPHSCKCNSNVPYLLSIRDSEGSNIYEPLIPKSPTVPN QEQKYPVPIQPQKQDGAPSLPLAVKEAISIAKIALPMILTGLMLYSRSLISMLFLGRL GELALAGGSLAIGFANITGYSILSGLAMGMESICGQAFGARKYTLLGITLQRTVLLLF VSSLPISLLWINMKTILILCGQDETIATEAQSYLVYSVPDLLAQSLLHPLRIYLRTQS ITFPLTCCAILSILLHIPINYLLVSHLKLGIKGVALSGVLTNFNLVGSLIIYILYFGV HKKTWGGFSMECFKEWKSLTNLAIPSCISVCLEWWWYEIMILLCGLLLNPEATVASMG ILIQTTALIYIFPSSLSFSVSTRVGNELGANQPKRAKLAAFVGLFCGFMLGFSALLFA VMVRNMWASMFTDDREIIALTSLVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANIN LGCFYLVGMPVAVWLGFFAGFDFKGLWLGLLAAQGSCMLTMMMVLVRTDWDSEAQRAK ELTGTVVVVDDSKEVEQEKLLKAEIKEDSFCLLGDLEKPDHYCLV" mobile_element complement(26166560..26166751) /note="source:scaffold_5_CACTA_0613 2893 3087" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26168785..26168829) /note="source:CACAO_on_E1_scaffold_1 80 125" /mobile_element_type="transposon:TIR/hAT" mobile_element 26169838..26169892 /note="source:CACAO_M_E43753_F73_scaffold_5 2486 2537" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26169860..26169899 /note="source:CACAO_on_SS_E42_scaffold_2 8457 8497" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(26172687..26172741) /note="source:CACAO_PIF_E144_scaffold_10 6005 6061" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26172692..26172766 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5681 5749" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26174276..26176565) /locus_tag="TCM_015092" /note="dbxref CacaoGD:Thecc1EG015092" mRNA complement(join(26174276..26174906,26176392..26176565)) /locus_tag="TCM_015092" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1450t1" CDS complement(join(26174767..26174906,26176392..26176422)) /locus_tag="TCM_015092" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23091.1" /translation="MQNKHPFFNSVDRKDESDNGGGGPNAKISSEACGCLLEACDLYS KWTVTFTRGETP" gene complement(26181800..26183730) /locus_tag="TCM_015093" /note="dbxref CacaoGD:Thecc1EG015093" mRNA complement(join(26181800..26182542,26182689..26182835, 26182971..26183227,26183368..26183730)) /locus_tag="TCM_015093" /product="BCL-2-associated athanogene 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027108t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13910.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03720t00001" CDS complement(join(26182117..26182542,26182689..26182835, 26182971..26183227,26183368..26183602)) /locus_tag="TCM_015093" /note="paralog of Thecc1EG027108t1" /codon_start=1 /product="BCL-2-associated athanogene 3" /protein_id="EOY23092.1" /db_xref="Phytozome:POPTR_0015s13910.1" /db_xref="TAIR:AT5G52060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID06" /translation="MMRMKTKATGLSPVTNGGGGGGGGEPAAHDWELRPGGMLVQKRS PDSDRSTIPPPNIRVRVKYGSIYHEISINSQATFGELKKMLTGPTGLHHQDQKLLYKD KERDSNAFLDMAGVKDKSKIVLVEDPISQEKRLLEMRKNAKMEKASKSISEISLEVDR LAGQVSAFESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQ KYVETLDMLKVKNAVPSSNGGQMPMQNQHRHTNGQKLAPIQEQQSRHFNGQRVAPNQE QQSRNSVAHLPVHQQYQQQQRQSKHSASGAVVVTTKWETFDSSPSLLPLPSTSTSTAT STSSTSNNSVPPKFPWEFFD" mobile_element complement(26191150..26191245) /note="source:scaffold_3_CACTA_0382 1861 1955" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26191175..26191260) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3876 3961" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26194211..26195861 /locus_tag="TCM_047013" /note="dbxref CacaoGD:Thecc1EG047013" mRNA join(26194211..26194654,26194767..26194853, 26194950..26195861) /locus_tag="TCM_047013" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G52100.1" /note="quality class is strong-expertchoice, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15406t00001" CDS join(26194434..26194654,26194767..26194853, 26194950..26195220) /locus_tag="TCM_047013" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23093.1" /translation="MRLMSKKKSTEAHKRKTFNPVLEFKNDKVAHFSFLSLFVRQGAN YWVKMGCVFIAWSFLGFHLVQQFTSQAQERFTPSNMISQMCSASCQACSWLLERLFDS SIWCMAWRNFCRIPLFLVYKSDLGKSSGESFSSCRPIFSKRIDVILPAETSTEEDCIK MEEKQKYLCIYFSLRQNRCNLIKYARDFKIEA" gene complement(26194552..26198508) /locus_tag="TCM_015095" /note="dbxref CacaoGD:Thecc1EG015095" mRNA complement(join(26194552..26194656,26194769..26194853, 26194950..26195352,26195493..26195748,26196687..26196878, 26197398..26197551,26197899..26197970,26198050..26198508)) /locus_tag="TCM_015095" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene19004" /inference="similar to AA sequence:Phytozome:POPTR_0015s13640.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc810t6; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc810t8; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1061t4" mRNA complement(join(26195017..26195045,26195241..26195352, 26195493..26195577,26195668..26195748,26196687..26196878, 26197398..26197551,26197676..26197819,26197899..26197970, 26198050..26198381)) /locus_tag="TCM_015095" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene19004" /inference="similar to AA sequence:Phytozome:POPTR_0015s13640.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc810t8" CDS complement(join(26195723..26195748,26196687..26196878, 26197398..26197551,26197899..26197970,26198050..26198319)) /locus_tag="TCM_015095" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY23095.1" /db_xref="Phytozome:POPTR_0015s13640.1" /db_xref="TAIR:AT5G52110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BWJ4" /translation="MKMVILTTKTLHFNPILQLKTPLGFRPKFASISARLDNPQQRLN LSVLRFTLGIPGLDESYLPRWIGYGFGSLLILNHLFGSDSVTAAQLRSEALGISLAAF SVTLPYLGKFLKLILAGGELCVRGYWNVPDVVPKDNVLDWFKSNIEETGLSDLTDTLY FPQTGDAEFWKMLPQGTRSALVQPVLLDPNLSNNEMGSIEGFVLLASSMRYAYSDKDR AWIRAVSNKLRSFCMQSEI" CDS complement(join(26195723..26195748,26196687..26196878, 26197398..26197551,26197676..26197819,26197899..26197970, 26198050..26198319)) /locus_tag="TCM_015095" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23094.1" /db_xref="Phytozome:POPTR_0015s13640.1" /db_xref="TAIR:AT5G52110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9G3" /translation="MKMVILTTKTLHFNPILQLKTPLGFRPKFASISARLDNPQQRLN LSVLRFTLGIPGLDESYLPRWIGYGFGSLLILNHLFGSDSVTAAQLRSEALGISLAAF SVTLPYLGKFLKGATPIDQTTLPEGAEQIFVMSQNVSVAQKEDLAWATYVLLRNTNTT SVLILAGGELCVRGYWNVPDVVPKDNVLDWFKSNIEETGLSDLTDTLYFPQTGDAEFW KMLPQGTRSALVQPVLLDPNLSNNEMGSIEGFVLLASSMRYAYSDKDRAWIRAVSNKL RSFCMQSEI" mRNA complement(join(<26196826..26196849,26197398..26197551, 26197676..26197819,26197899..26197970,26198050..26198402)) /locus_tag="TCM_015095" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene19004" /inference="similar to AA sequence:Phytozome:POPTR_0015s13640.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1062t9_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1061t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc810t8" CDS complement(join(<26196827..26196849,26197398..26197551, 26197676..26197819,26197899..26197970,26198050..26198319)) /locus_tag="TCM_015095" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY23097.1" /db_xref="Phytozome:POPTR_0015s13640.1" /db_xref="TAIR:AT5G52110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9G3" /translation="MKMVILTTKTLHFNPILQLKTPLGFRPKFASISARLDNPQQRLN LSVLRFTLGIPGLDESYLPRWIGYGFGSLLILNHLFGSDSVTAAQLRSEALGISLAAF SVTLPYLGKFLKGATPIDQTTLPEGAEQIFVMSQNVSVAQKEDLAWATYVLLRNTNTT SVLILAGGELCVRGYWNVPDVVPKDNVLDWFKSNIEETGLSDLTDTLYFPQTGGDTFC LGT" mRNA complement(join(26196855..26196929,26197398..26197551, 26197676..26197819,26197899..26197970,26198050..26198508)) /locus_tag="TCM_015095" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene19004" /inference="similar to AA sequence:Phytozome:POPTR_0015s13640.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc810t4; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1061t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc810t8" CDS complement(join(26196916..26196929,26197398..26197551, 26197676..26197819,26197899..26197970,26198050..26198319)) /locus_tag="TCM_015095" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY23096.1" /db_xref="Phytozome:POPTR_0015s13640.1" /db_xref="TAIR:AT5G52110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9G3" /translation="MKMVILTTKTLHFNPILQLKTPLGFRPKFASISARLDNPQQRLN LSVLRFTLGIPGLDESYLPRWIGYGFGSLLILNHLFGSDSVTAAQLRSEALGISLAAF SVTLPYLGKFLKGATPIDQTTLPEGAEQIFVMSQNVSVAQKEDLAWATYVLLRNTNTT SVLILAGGELCVRGYWNVPDVVPKDNVLDWFKSNIEETGLSDLTDTLYFPQTGVMVL" gene 26200542..26207385 /locus_tag="TCM_015096" /note="dbxref CacaoGD:Thecc1EG015096" mRNA join(26200542..26203105,26203205..26205108, 26205472..26206020,26207239..26207385) /locus_tag="TCM_015096" /product="Retrotransposon, unclassified-like protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g03530.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012660t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00309t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc8084t1_G2" CDS join(26200775..26203105,26203205..26205108, 26205472..26206020,26207239..26207284) /locus_tag="TCM_015096" /note="paralog of Thecc1EG012660t1" /codon_start=1 /product="Retrotransposon, unclassified-like protein" /protein_id="EOY23098.1" /translation="MESSIGNQDAPVPSYIQDLMRMIQTSQERMQILEDNNKRMMDTI SQFASSTVTTFQAQSVHPNESAPAGVTHLVTNIEENGGNGEGAVDVVVAANPNPTNTT IAVTPTTTSTAVIPPIPTQGFVTLEELQKLLDQKNKSLNFSEFDLKLPYPASVAAKPY PKDYTSPKFKQFNGKTGDAREHVMKFVETLGVAGLDDDLKLKEFSKSLTEKAYTWYVN LTPGSVQSWNQMCRMFGEKFFSTQEKVTLVDLGREFQKSREDLMEYIQRFRERVLDIQ ESHDEKELVKVCIQGMFDEYRLHLENLPLPTFATLVEAARRTNNTVFRQKGLTRFGRR NNPTVNAIQGGGRERRGPIRANLRPRRDVPRRGLDEENDSSPPFSVPLDRVRALLQEW VRDGQINLPYTPRPPTTEEKANPRYCDYHRTVGHPLAECRNLRRMFHRRVQAGEVLIG NNRVQNNPLPIHPNPRGQVSAIIHAHHDDPSSSNTQFNDANEATRVTSSIANSLMKTP SFRHFFDQLGFSEEARKEAAISLVQIAGEQYGECNLIGRPMGKMVGAYKNAIVFTEAD MCTPHPYHNKPLYVESTINGYPIRRTFIDDGSSVNLIPLSTLKAVNMDLKSLRRPMAI TSFDNKEIITLGQVTVNFKMGPIQDQTCFHVIDANVAYHALIGRKFLHMHNIIPSSRH QCIKGYWKGKEVFIPATKAPFELHEVSYIEASFFEDLATDGETAIVRPIGVPFPRWEK YENKTESNGKKKERGGKRIRENTSTYKEVNEEKMSNGPPDTSPSCFQVEAEKEKVQEV LSTEEQLSDQPKPQGDELEEINMAEEGETSKPLFISKSLSGEQKVVLIELLRKFQDVF AWTYEQMPGLDENLIIHELHISPQSKPVKQHARVFHHEIEGQIKEEINKLLKVGFIKP IHYPTWLANVVPVKKKNGTIRVCVDFRDLNKACPKDDFPLPNIDTLVDATAGHEMFSF MDGFSGYNQIKMAREDAEKTAFRTPFGNFYYTVMPFGLKNAGATYQRAMTAIFHDMMH DFMEDYVDDIVVKSKKAFNHFEDLKKVFERCRKYNLRMNPLKCAFGVTAGRFLGFMVH RKGIDVDPTKIKAIQSMPSPMNQKQLKSLLGKVSYIRRFIPALGEIIVPFQALLKKGV PFIWGEPQQQAFEKIKKILTSPATMIMPIKGKPMMLYLTSTPYSIGALLVQEMDGEEK PVYYISRCLHGSELNYPPMEKHCLALVYTTQKLRHYFLAHKLIIVTKSDPIKFLLSKP VLSGRVAKWLLLLGEFDVSVVQPKAIKSQALSDLLAYFPSPFEEIISDAIPAEFHEEV CAVNIEEGEWSLYFDGSSNSFGGGAGIVLIPPNKEDNSAVQSSELVASHLSRGHISLK RKGLRVLEAPSEDENFLISCLELNSFESSREPISELLLPPIYDEEDWRKSIIKELLNP SSTAIPRLKHYILIHGTLYHKGSNGVLARCVSEEEAKERLRIAHEQWCGEEGPPLHRL IQRAGYFWPSMSKDALQLQKACIRCSEPPDVQECNFVGSAGDWRRPYIDFFQNGILPA NFQDARQLKRRAQRFFLKGNDLFRLSFAGTSLKCVSPADVNPFRNFTAFILAVFYYL" gene 26206019..26207602 /locus_tag="TCM_015097" /note="dbxref CacaoGD:Thecc1EG015097" mRNA join(26206019..26207146,26207236..26207602) /locus_tag="TCM_015097" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene17191.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012660t1" /inference="similar to AA sequence:frave:gene14044" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01937t00002" CDS 26206115..26207080 /locus_tag="TCM_015097" /note="dbxref frave:gene14044; paralog of Thecc1EG012660t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23099.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B3D7" /translation="MEADAVNYARKCYPCQIYGNAIHAPAVQLHSIITPWPFHTWAFD LIGPINPPFKGYTWILVATECFTKWVEAISLKNATGPAVANFIKENIICRFGIPRRIL SDNGTPFINANVRELLALYDVDHVKSTPYYPKGNGQAEATNKTLLKVLSRMVHEEPKM WYDALPVALWAYRTSKREPTKATPFSLVYGTEAMLPAEILVPSARLALDAELDNDNLR MLELEALEERRDRAKKNLSVYQRRLSRAYDKLVKRRNFEEGDLVLRAAEHIRRGTPSS KFSPKWEGPYIVHEVNESGYCKLINPKNNAITAPINFQYIKKYHV" gene complement(26207106..26212789) /locus_tag="TCM_015098" /note="dbxref CacaoGD:Thecc1EG015098" mRNA complement(join(26207106..26208400,26208472..26208696, 26208779..26209300,26209414..26211167,26212662..26212789)) /locus_tag="TCM_015098" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018183t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.51 coverage" CDS complement(join(26207738..26208400,26208472..26208696, 26208779..26209300,26209414..26210694)) /locus_tag="TCM_015098" /note="paralog of Thecc1EG018183t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23100.1" /translation="MYTYLFFHDHVCRQLFPSSSMPRTRVPPKINYGEPGRVATRKKT TAHKRKNSDSKLVAPKKIRVGKSGEVPPVPENWKDEIIRERGEDRFWEEVRARQVDEH PSESVGYDWNRLCSETPPHRRSGIPGPSILKFRFERGEFPLSATKLGSNSQFVHGWDE WVTKVLKNPSYVKLLSSAGILDAIRITSKLNIRREKRIDVWRAILARWSTFSHTMITA WGEFTFTLEDVCVLLELPCIGKDDFHSIKLSEEEVCTRDFFFDLLKSLSKTSKVARFS NWIGVFYKKFNAKGIEIDSPEYPDHKYELVALIIFWLARHVLPGCPDDGISSAVVPLA IKIVKGIRFPLAPLYLGSLYKRLDLYQLKIIESAGRYKVLTYVDVSFIQMCLWERFGT CAPMPNAYPFASFSVNNLLSRNNYRAWAWHDRLQRSGRMSSRGINFCIWVHSSHLPSM IESSSSGGDRNFRSVEVYSPYRVARQFGFDQPAPPDSSSPISFSSCVSSFLMTRLSLH SDKLKSCTIPAFDRVGIHTSGWFAYWGECLGEWRSFTVPLTNPTARLYTPHVSNNDVS LRLIPLRKKKCMTEEEDTAVPAPIRQTKDKHAYRKGESTTRVELNSVEEEETSEVETE EESCDSERSDESDDESIDVDKAEIEGGPTPFDDFIDFDVLFPNHVHSSTMNQIVLTPQ AIRDEVVSDTETIPAGEVVPEVTPNIEVIEDVRIDTDNVRAIPMTPRAYSSPVPEHRD TSSVSGTQIAHTEQSSKKVDFHSFQVSLEYVTYLEQVFNIEGEFWSTSFVKNVDVICL MMDVLGRALVISHAPLMSTSPEELQQMLQDFDDACNFGFKLECLNDCRSKAKIFLNKS SLEDELEDIAAKITSLKKREAEVREQLDVFANNNSSLWNM" mobile_element 26211825..26213084 /note="source:INTACT384F_F20_scaffold_3-int 11321 12580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26213670..26214616 /note="source:CACAO_M_E49279_F74_scaffold_6 1005 1929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26214743..26214986) /note="source:CACAO_PIF_E54_scaffold_3 8894 9133" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26215238..26215686 /note="source:scaffold_9_CACTA_0946 17750 18226" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26215638..26215746 /note="source:CACAO_PIF_E119_scaffold_3 4553 4669" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26215747..26215770 /note="source:CACAO_Mutator_E592_scaffold_3 3649 3751" /mobile_element_type="transposon:TIR/Mutator" gene 26215986..26224241 /locus_tag="TCM_015099" /note="dbxref CacaoGD:Thecc1EG015099" mRNA join(26215986..26216556,26217381..26218406, 26218712..26218843,26219058..26219106,26219705..26219919, 26219999..26220067,26221214..26221314,26221388..26221447, 26221722..26221815,26221898..26221967,26222695..26224241) /locus_tag="TCM_015099" /product="SEUSS-like 2" /inference="alignment:exonerate-protein:2:frave:gene13313" /inference="similar to AA sequence:frave:gene13313" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1120t19" CDS join(26217477..26218406,26218712..26218843, 26219058..26219106,26219705..26219919,26219999..26220067, 26221214..26221314,26221388..26221447,26221722..26221815, 26221898..26221967,26222695..26223614) /locus_tag="TCM_015099" /note="dbxref frave:gene13313" /codon_start=1 /product="SEUSS-like 2" /protein_id="EOY23101.1" /db_xref="TAIR:AT5G62090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4D6" /translation="MAPSRVAGGLTQSSSSSGIFFQGDGQSQAVVNSRLSSPYENSSN SIPGTGRPNLGPVSGDMNSAVLNSVANSGPSVGASSLVTDANSALSGGPHLQRSASIN TDSYMRLPASPMSFSSNNISMSGSSVVDGSSVGQQGSHQDPSVQQMQQSQQLQQGASS ATSLPTTQTGQVSLPMGPRVPGSFMQDPNNLSQVQKKPRLDIKQEDILQQQVLQQLLQ RQDSMQLQGRNPQLQALIQQQRLRHQQQQQYLQSMPPLQRAHLQQQQQQMQLRQQLQQ QGMQQVAAMKRPFDSGVCARRLMQYLYHQRQRPSDNTIAYWRKFVAEYYSPRAKKRWC LSQYDNVGSHALGVFPQAAMDAWQCDICGSKSGRGFEATFEVLPRLNEIKFGSGVMDE LLFLDLPRECRSTSGMMMLEYGKAVQESVYEQLRVVREGQLRIIFTQELKILSWEFCA RKHEELFPRRLVAPQVNQLLHVAQKCQSTISDGGSEGVSQQDLQTNSNIALKIFEQIS CSKSLLEKPWKVLTAGRQLVKSLELQSLNDLGFSKRYVRCLQIAEVVNSMKDLIDFCR EHKVGPIEGLKTYPRHATTAKLQMQNMQEMEQLANVQGLPTDRNTLNKLMALHPGINN PMGNNHHMVGRGTLSGSAQAALALTNYQNLLMRQNSMNSNPNSLHQEASSSFNNSNQS PSSNFQGPAALLPGSMQTLPVSGLSSPHLPAAQQPQQQQQLQQRTLSANNLIQQNHPQ SSQGNQALQQQMIQQLLREMSNNSTGVQQQSLSGQNVNGSMARNGVGFGSNTGAVAPA ASNVSGSVAGPAPSRSNSFKAPSNSDSSAAGGNNGFNQRAPDLPQNLHLQDDIVPDIA HEFTENGFFNSDLDDNMGYGWKA" gene complement(26224022..26227922) /locus_tag="TCM_015100" /note="dbxref CacaoGD:Thecc1EG015100" mRNA complement(join(26224022..26224209,26224302..26224834, 26225383..26225501,26225791..26225963,26226056..26226469, 26226615..26226788,26227299..26227424)) /locus_tag="TCM_015100" /product="F-box family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025217" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005421t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400025217" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1120t18" mRNA complement(join(26224182..26224834,26225383..26225501, 26225791..26225963,26226056..26226469,26226615..26226788)) /locus_tag="TCM_015100" /product="F-box family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025217" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005421t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400025217" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1120t14; alternateUTRof:Thecc1EG015100t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1120t18" mRNA complement(join(26224255..26224834,26225383..26225501, 26225791..26225963,26226056..26226469,26226615..26226788, 26227196..26227922)) /locus_tag="TCM_015100" /product="F-box family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025217" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005421t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400025217" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b014586t1a2; alternateUTRof:Thecc1EG015100t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1120t18" CDS complement(join(26224549..26224834,26225383..26225501, 26225791..26225963,26226056..26226469,26226615..26226741)) /locus_tag="TCM_015100" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005421t1" /codon_start=1 /product="F-box family protein, putative isoform 1" /protein_id="EOY23102.1" /db_xref="Phytozome:PGSC0003DMP400025217" /db_xref="TAIR:AT4G00755.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HP61" /translation="MDNCCDFIKLLGPDMSMKILLHLDNPADLIRVCLVSSSWRQFVI SNGLCKQLCLKLLPEISSVAHTIEVNNLIDPVKLRQHDHLELECLRRNHRVYAFLARG LNPLTRKDCISEAISASSTDNYPEESIHNTLEPLDRIEHIASYWSSEGQSDPAIPETL IYKLVAKVCLVTEFHVQPFQAYFQYGFPIYSSKAVRFRLGHPRLPEASDTKDGSMPSH RLADDKFIWTYISPEFPMAQENCLQKFKLPENVLCIGGFLQVELLGRVQKQEMDGLYY ICISHVQVVGRPFLPRFDIDILDATGRCALKYLPETENCMLSSGSPNWENAASSRFRT LTARLIQRGTRGWEQMILNTLLGTVAAGANEADDERPT" CDS complement(join(26224549..26224834,26225383..26225501, 26225791..26225963,26226056..26226469,26226615..26226741)) /locus_tag="TCM_015100" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005421t1" /codon_start=1 /product="F-box family protein, putative isoform 1" /protein_id="EOY23103.1" /db_xref="Phytozome:PGSC0003DMP400025217" /db_xref="TAIR:AT4G00755.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HP61" /translation="MDNCCDFIKLLGPDMSMKILLHLDNPADLIRVCLVSSSWRQFVI SNGLCKQLCLKLLPEISSVAHTIEVNNLIDPVKLRQHDHLELECLRRNHRVYAFLARG LNPLTRKDCISEAISASSTDNYPEESIHNTLEPLDRIEHIASYWSSEGQSDPAIPETL IYKLVAKVCLVTEFHVQPFQAYFQYGFPIYSSKAVRFRLGHPRLPEASDTKDGSMPSH RLADDKFIWTYISPEFPMAQENCLQKFKLPENVLCIGGFLQVELLGRVQKQEMDGLYY ICISHVQVVGRPFLPRFDIDILDATGRCALKYLPETENCMLSSGSPNWENAASSRFRT LTARLIQRGTRGWEQMILNTLLGTVAAGANEADDERPT" CDS complement(join(26224549..26224834,26225383..26225501, 26225791..26225963,26226056..26226469,26226615..26226741)) /locus_tag="TCM_015100" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005421t1" /codon_start=1 /product="F-box family protein, putative isoform 1" /protein_id="EOY23104.1" /db_xref="Phytozome:PGSC0003DMP400025217" /db_xref="TAIR:AT4G00755.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HP61" /translation="MDNCCDFIKLLGPDMSMKILLHLDNPADLIRVCLVSSSWRQFVI SNGLCKQLCLKLLPEISSVAHTIEVNNLIDPVKLRQHDHLELECLRRNHRVYAFLARG LNPLTRKDCISEAISASSTDNYPEESIHNTLEPLDRIEHIASYWSSEGQSDPAIPETL IYKLVAKVCLVTEFHVQPFQAYFQYGFPIYSSKAVRFRLGHPRLPEASDTKDGSMPSH RLADDKFIWTYISPEFPMAQENCLQKFKLPENVLCIGGFLQVELLGRVQKQEMDGLYY ICISHVQVVGRPFLPRFDIDILDATGRCALKYLPETENCMLSSGSPNWENAASSRFRT LTARLIQRGTRGWEQMILNTLLGTVAAGANEADDERPT" mobile_element 26225025..26225140 /note="source:scaffold_8_CACTA_0863 5131 5241" /mobile_element_type="transposon:TIR/CACTA" gene complement(26228257..26230441) /locus_tag="TCM_015102" /note="dbxref CacaoGD:Thecc1EG015102" mRNA complement(join(26228257..26229060,26229723..26229841, 26230089..26230441)) /locus_tag="TCM_015102" /product="Phloem protein 2-A13" /inference="alignment:exonerate-protein:2:frave:gene32388" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005420t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s13670.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2804t1" CDS complement(join(26228646..26229060,26229723..26229841, 26230089..26230403)) /locus_tag="TCM_015102" /note="paralog of Thecc1EG005420t1" /codon_start=1 /product="Phloem protein 2-A13" /protein_id="EOY23105.1" /db_xref="Phytozome:POPTR_0012s13670.1" /db_xref="TAIR:AT3G61060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LN77" /translation="MGAGVSGLAADAQRGFPLRPGLDDVPESCISSIFMYLDPPEICK LASLNRAFRGASLADFVWETKLPSNYRYLVKKVLGQSPETLSQKETYARLCRPNRFDG GTKEVWLDKNSGKLCLAVSAKALKITGIDDRRYWNHIPTEESRFQTVAYLQQIWWFEV VGELDFEFPPGAYSLFFRLQLGKSSKRFGRRVCNLDQVHGWNIKPVRFQLSTSNGQQA SSECYLYEPGNWVHYHVGDFVIENSNSPAKIKFSMMQIDCTHTKGGLCVDSVLIYPSE FRQRLK" mobile_element 26231152..26232910 /note="source:scaffold_5_CACTA_0615 453 2254" /mobile_element_type="transposon:TIR/CACTA" gene complement(26234914..26241691) /locus_tag="TCM_015104" /note="dbxref CacaoGD:Thecc1EG015104" mRNA complement(join(26234914..26234945,26239138..26239325, 26239547..26239614,26240568..26240623, 26240729..>26240901)) /locus_tag="TCM_015104" /product="DNA-directed RNA polymerase II subunit protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01020800001" /inference="similar to AA sequence:Phytozome:POPTR_0015s13600.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is weak, protein is partial5; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc82t24_G2; inference alignment:Newbler:10:TSA:cgbaL_g03554t00002" gene complement(26235425..26238079) /locus_tag="TCM_015103" /note="dbxref CacaoGD:Thecc1EG015103" mRNA complement(join(26235425..26235527,26235923..26236100, 26236408..26236541,26236932..26236976,26237057..26237103, 26237266..26237446,26237610..26238079)) /locus_tag="TCM_015103" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13610.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s13650.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5055t1" CDS complement(join(26235492..26235527,26235923..26236100, 26236408..26236541,26236932..26236976,26237057..26237103, 26237266..26237446,26237610..26237723)) /locus_tag="TCM_015103" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY23110.1" /db_xref="Phytozome:POPTR_0012s13650.1" /db_xref="TAIR:AT5G52140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4D3" /translation="MWRGRSGNSDSYWDNIEKNLYDMFFYEADNIQQIYHDEGLAVPI YQRHDNNYSDGDNYGSSSSWGEYSGHTSDEALARHLQEMEDGFQNFSFDEHFRTVSAG AGGVSQEGPSFSGGDQDNVDPDNMTYEQISELGQSIGSAKKGLSVEQMSRLPTHKYKG SSKKKGKSGDEDSESLSAKYRISFSDIIMLYVTSEPRCVICKMQYRRGNALMTLPCAH KYHEECIKNWLGEDNSCCVCKEEVAV" mobile_element complement(26235838..26235893) /note="source:CACAO_PIF_E144_scaffold_10 5995 6050" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26235845..26235926 /note="source:CACAO_Mutator_E1149_scaffold_5 4716 4803" /mobile_element_type="transposon:TIR/Mutator" mRNA complement(join(26238894..26239325,26239547..26239614, 26240572..26240626,26240729..26240901,26240992..26241026, 26241409..26241605)) /locus_tag="TCM_015104" /product="DNA-directed RNA polymerase II subunit protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01020800001" /inference="similar to AA sequence:Phytozome:POPTR_0015s13600.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7195t1; inference alignment:Newbler:10:TSA:cgbaL_g03554t00002" mRNA complement(join(26238929..26239325,26239547..26239614, 26240572..26240623,26240729..26240901,26240993..26241026, 26241409..26241543)) /locus_tag="TCM_015104" /product="DNA-directed RNA polymerase II subunit protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01020800001" /inference="similar to AA sequence:Phytozome:POPTR_0015s13600.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03554t00002" mRNA complement(join(26239133..26239325,26239547..26239614, 26240572..26240623,26240729..26240935,26241409..26241691)) /locus_tag="TCM_015104" /product="DNA-directed RNA polymerase II subunit protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01020800001" /inference="similar to AA sequence:Phytozome:POPTR_0015s13600.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc87t9; inference alignment:Newbler:10:TSA:cgbaL_g03554t00002" CDS complement(join(26239256..26239325,26239547..26239614, 26240572..26240623,26240729..26240935,26241409..26241443)) /locus_tag="TCM_015104" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase II subunit protein isoform 3" /protein_id="EOY23108.1" /db_xref="Phytozome:POPTR_0015s13600.1" /db_xref="TAIR:AT5G51940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ98" /translation="MADDDYNDMDMGAICCLIVCDGQEGAEEDLENNNNDDVPVEPIE TEEKEEHDSKDKIRKTSKYMTKYERARILGTRALQISMNAPVMVELEGESDPLEIAMK ELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD" CDS complement(join(26239256..26239325,26239547..26239614, 26240572..26240623,26240729..26240901,26240993..26241026, 26241409..26241443)) /locus_tag="TCM_015104" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase II subunit protein isoform 1" /protein_id="EOY23106.1" /db_xref="Phytozome:POPTR_0015s13600.1" /db_xref="TAIR:AT5G51940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ98" /translation="MADDDYNDMDMGYEDEPPEPEIEEGAEEDLENNNNDDVPVEPIE TEEKEEHDSKDKIRKTSKYMTKYERARILGTRALQISMNAPVMVELEGESDPLEIAMK ELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD" CDS complement(join(26239256..26239325,26239547..26239614, 26240572..26240626,26240729..26240901,26240992..26241026, 26241409..26241424)) /locus_tag="TCM_015104" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase II subunit protein isoform 2" /protein_id="EOY23107.1" /db_xref="Phytozome:POPTR_0015s13600.1" /db_xref="TAIR:AT5G51940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ98" /translation="MTWIWDMRMSHQSLRLKEGAEEDLENNNNDDVPVEPIETEEKEE HDSKDKIRKTSKYMTKYERARILGTRALQISSMNAPVMVELEGESDPLEIAMKELRER KIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD" CDS complement(join(26239553..26239614,26240568..26240623, 26240729..>26240901)) /locus_tag="TCM_015104" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase II subunit protein isoform 4" /protein_id="EOY23109.1" /db_xref="Phytozome:POPTR_0015s13600.1" /db_xref="TAIR:AT2G04630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ98" /translation="EGAEEDLENNNNDDVPVEPIETEEKEEHDSKDKIRKTSKYMTKY ERARILGTRALQISMNAPVMVELEGESDPLEVNCHEGASRAENTLHHSALLA" mobile_element complement(26242685..26243128) /note="source:MITE_Unknow_2_24 1 442" /mobile_element_type="transposon:TIR/MITE" gene 26243649..26247502 /locus_tag="TCM_015106" /note="dbxref CacaoGD:Thecc1EG015106" mRNA join(26243649..26244572,26245227..26245437, 26245528..26245825,26245913..26246305,26246392..26246469, 26246614..26247502) /locus_tag="TCM_015106" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s13570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005417t1" /inference="similar to AA sequence:Phytozome:GSVIVT01010611001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2136t1" CDS join(26243865..26244572,26245227..26245437, 26245528..26245825,26245913..26246305,26246392..26246469, 26246614..26246854) /locus_tag="TCM_015106" /note="paralog of Thecc1EG005417t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /protein_id="EOY23111.1" /db_xref="Phytozome:GSVIVT01010611001" /db_xref="TAIR:AT4G00750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TMV6" /translation="MAGCILPYHATFKPLKATTTSFASRKGSLFSLALVLCLCTLSFL FGLWQHSGSAPTFITTNKSLPCIPNPNTTITTRTTSETLDFSTHHVADADEESLLPDV KTYPSCSVKYSEYTPCEDHIRSLKFKRDRLIYRERHCPEKGELLKCRVPAPYDYKNPF PWPKSRDLAWFANVPHKELTVEKAGQNWIRYEGKRFRFPGGGTMFPHGADAYIDDIGK LINLKDGSIRTAIDTGCGVASWGAYLLSRNILTMSFAPRDTHEAQVQFALERGVPAIL GVLASKRLPYPSRAFDMAHCSRCLIPWDQYDGVYLIEVDRVLRPGGYWILSGPPIRWK KYWQGWQRTREDLNDEQTRIERVARRLCWKKLVEKDDIAIWQKPINHLNCKVNRKFNR NPPFCLAQDPDKAWYTNLETCLTRLPEVSHDQEIAGGELAKWPQRLNAIPPRIRNGTV NGITAEIFMQDSDVWKRRLSYYKTLNHQLGQNGRYRNILDMNAYLGGFATALIDDPVW VMNVIPAEAKVNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHADSVFSLYKDRCEM EDILLEMDRILRPEGSVVFRDDVDILVKIKKITDGLNWDSQIVDHEDGPLNREKLLFG VKVYWTAPATVETASTTS" mobile_element complement(26246389..26246440) /note="source:CACAO_Mariner_E25_scaffold_1 4415 4466" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 26247448..26253740 /locus_tag="TCM_015107" /note="dbxref CacaoGD:Thecc1EG015107" mRNA join(26247448..26247932,26249130..26249238, 26249954..26252318,26252421..26252712,26252839..26253740) /locus_tag="TCM_015107" /product="FAR1-related sequence 5 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g38320.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s13550.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b014591t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1304t2_C2" mRNA join(26247448..26247932,26249130..26249238, 26249954..26252318,26252421..26252573,26252653..26252712, 26252839..26253740) /locus_tag="TCM_015107" /product="FAR1-related sequence 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s13550.2" /inference="similar to AA sequence:Phytozome:POPTR_0012s13550.2" /note="transcript variant 1; alternatively spliced; quality class is strong-expresste, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1304t2_C2" CDS join(26247641..26247932,26249130..26249238, 26249954..26252318,26252421..26252573,26252653..26252712, 26252839..26252937) /locus_tag="TCM_015107" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="FAR1-related sequence 5 isoform 1" /protein_id="EOY23112.1" /db_xref="Phytozome:POPTR_0012s13550.2" /db_xref="TAIR:AT4G38180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4C5" /translation="MAILRSLLCLISWQATALLLLLAVAAVQSQTAKAQSCPNELNRL NVCAPFVVPGVPEATPSSDCCAALQSVQHDCLCNTLRIASRLPSRCNIPALSCVPFFF SQRDRSRISYPGSLLKSDISSVENDDSLVTPRSMNRDADDLGNLHDEDADNRAQTSDK LDLNVEHNCRSPKVNPVHTTQSSLPSKGETNADGVLKIGIEFDSDEHAYRFYNKYARL LGFSVRKDWVNRSKIHGQVVSRKFTCSKEGYRRKDQRDVNVKKHRKETRTGCLAHMII TRQPNGKYRVSHFEANHNHDNINPNNEQTLQLQKELCFAQASETDKPNNSETQNAAFD LMRRRFLVRESLDCLAEDYDNHLRSERVRDMKEGEAGHLLRYFLRQHFENPSVFYAIQ LDIDDKVSNIFWADDNMVVDYNYFGDVVCLDTSCRTNKDLKPFVQFIGVNHHNQVVIF AAALLYDDTVESLKWLFHTFLEAMSGKKPKVILTDQDATVVEAISSVLPETSHHICVW QMHRNALKHLSYVQKDAEAFANDFRSCIYDHKDENDFIHAWEAMLEIYNLKQNEWLKW MYREREKWAVVYDRNTFFIDMKCSHLGESLSNKLRRHLNSDQDVLQFFKHFERVVDEQ RYKEIEASDEMSHCKPKLMGNVILLKHASEIYTPKAFEVFQCEYEKCLNVVANQCSQN GYLSEYKVNTFGQSQEYTVTFDSSDDTVICSCMKFEYVGFLCSHALRVLDHRNIKVVP SRYILRRWTKDARIGCAREDSDFIIQENPKLVAARRYRDMCRCILNISARAAESDDAF HFASRQLNEIIVGLEKILTLKAEEAQVIASSSSGASASDSENAEIFLDGHAIEDQDES SRVQSKKENEAVVPHRQKQKNVPERGSKTKGVQNKRSNSPNTITSISSPSPTYVSPQA SGPAPVMQGLFNFEANQVVQCIYQQPNMVMEQEPNAEMYQQPNFYTDQHDSPSQTQLL QEPLIRSTYQESASNSTHLRQAMELDIQPPHSSSFLLYDHRYRTSDTPFLGPK" CDS join(26247641..26247932,26249130..26249238, 26249954..26252318,26252421..26252600) /locus_tag="TCM_015107" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="FAR1-related sequence 5 isoform 3" /protein_id="EOY23114.1" /db_xref="Phytozome:POPTR_0012s13550.2" /db_xref="TAIR:AT4G38180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4C5" /translation="MAILRSLLCLISWQATALLLLLAVAAVQSQTAKAQSCPNELNRL NVCAPFVVPGVPEATPSSDCCAALQSVQHDCLCNTLRIASRLPSRCNIPALSCVPFFF SQRDRSRISYPGSLLKSDISSVENDDSLVTPRSMNRDADDLGNLHDEDADNRAQTSDK LDLNVEHNCRSPKVNPVHTTQSSLPSKGETNADGVLKIGIEFDSDEHAYRFYNKYARL LGFSVRKDWVNRSKIHGQVVSRKFTCSKEGYRRKDQRDVNVKKHRKETRTGCLAHMII TRQPNGKYRVSHFEANHNHDNINPNNEQTLQLQKELCFAQASETDKPNNSETQNAAFD LMRRRFLVRESLDCLAEDYDNHLRSERVRDMKEGEAGHLLRYFLRQHFENPSVFYAIQ LDIDDKVSNIFWADDNMVVDYNYFGDVVCLDTSCRTNKDLKPFVQFIGVNHHNQVVIF AAALLYDDTVESLKWLFHTFLEAMSGKKPKVILTDQDATVVEAISSVLPETSHHICVW QMHRNALKHLSYVQKDAEAFANDFRSCIYDHKDENDFIHAWEAMLEIYNLKQNEWLKW MYREREKWAVVYDRNTFFIDMKCSHLGESLSNKLRRHLNSDQDVLQFFKHFERVVDEQ RYKEIEASDEMSHCKPKLMGNVILLKHASEIYTPKAFEVFQCEYEKCLNVVANQCSQN GYLSEYKVNTFGQSQEYTVTFDSSDDTVICSCMKFEYVGFLCSHALRVLDHRNIKVVP SRYILRRWTKDARIGCAREDSDFIIQENPKLVAARRYRDMCRCILNISARAAESDDAF HFASRQLNEIIVGLEKILTLKAEEAQVIASSSSGASASDSENAEIFLDGHAIEDQDES SRVQSKKENEAVVPHRQKQKNVPERGSKTKGVQNKRSNSPNTITSISSPSPTYVSPQA SGPAPVMQGLFNFEANQVVQCIYQQPNMVMEQEPNAEMYQQPNFYTDQHDSPSQTQLL QVIFVCSTF" mRNA join(26249124..26249238,26249954..26252318, 26252421..26252573,26252653..26252708,26252839..26253307) /locus_tag="TCM_015107" /product="FAR1-related sequence 5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g38320.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s13550.2" /inference="similar to AA sequence:Phytozome:POPTR_0012s13550.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1288t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1304t2_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6880t1" CDS join(26249958..26252318,26252421..26252573, 26252653..26252708,26252839..26252944) /locus_tag="TCM_015107" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="FAR1-related sequence 5 isoform 2" /protein_id="EOY23113.1" /db_xref="Phytozome:POPTR_0012s13550.2" /db_xref="TAIR:AT4G38180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4C5" /translation="MNRDADDLGNLHDEDADNRAQTSDKLDLNVEHNCRSPKVNPVHT TQSSLPSKGETNADGVLKIGIEFDSDEHAYRFYNKYARLLGFSVRKDWVNRSKIHGQV VSRKFTCSKEGYRRKDQRDVNVKKHRKETRTGCLAHMIITRQPNGKYRVSHFEANHNH DNINPNNEQTLQLQKELCFAQASETDKPNNSETQNAAFDLMRRRFLVRESLDCLAEDY DNHLRSERVRDMKEGEAGHLLRYFLRQHFENPSVFYAIQLDIDDKVSNIFWADDNMVV DYNYFGDVVCLDTSCRTNKDLKPFVQFIGVNHHNQVVIFAAALLYDDTVESLKWLFHT FLEAMSGKKPKVILTDQDATVVEAISSVLPETSHHICVWQMHRNALKHLSYVQKDAEA FANDFRSCIYDHKDENDFIHAWEAMLEIYNLKQNEWLKWMYREREKWAVVYDRNTFFI DMKCSHLGESLSNKLRRHLNSDQDVLQFFKHFERVVDEQRYKEIEASDEMSHCKPKLM GNVILLKHASEIYTPKAFEVFQCEYEKCLNVVANQCSQNGYLSEYKVNTFGQSQEYTV TFDSSDDTVICSCMKFEYVGFLCSHALRVLDHRNIKVVPSRYILRRWTKDARIGCARE DSDFIIQENPKLVAARRYRDMCRCILNISARAAESDDAFHFASRQLNEIIVGLEKILT LKAEEAQVIASSSSGASASDSENAEIFLDGHAIEDQDESSRVQSKKENEAVVPHRQKQ KNVPERGSKTKGVQNKRSNSPNTITSISSPSPTYVSPQASGPAPVMQGLFNFEANQVV QCIYQQPNMVMEQEPNAEMYQQPNFYTDQHDSPSQTQLLQEPLIRSTYQESASNSTHL RPWNLTSNLHIHLHFCFMITDTELLTLHFLGPSKG" mRNA join(26250082..26252318,26252421..26252573, 26252650..26252712,26252839..26253233) /locus_tag="TCM_015107" /product="FAR1-related sequence 5 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g38320.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s13550.2" /inference="similar to AA sequence:Phytozome:POPTR_0012s13550.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6880t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6880t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1304t2_C2" CDS join(26250372..26252318,26252421..26252573, 26252650..26252712,26252839..26252937) /locus_tag="TCM_015107" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="FAR1-related sequence 5 isoform 4" /protein_id="EOY23115.1" /db_xref="Phytozome:POPTR_0012s13550.2" /db_xref="TAIR:AT4G38180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4C5" /translation="MIITRQPNGKYRVSHFEANHNHDNINPNNEQTLQLQKELCFAQA SETDKPNNSETQNAAFDLMRRRFLVRESLDCLAEDYDNHLRSERVRDMKEGEAGHLLR YFLRQHFENPSVFYAIQLDIDDKVSNIFWADDNMVVDYNYFGDVVCLDTSCRTNKDLK PFVQFIGVNHHNQVVIFAAALLYDDTVESLKWLFHTFLEAMSGKKPKVILTDQDATVV EAISSVLPETSHHICVWQMHRNALKHLSYVQKDAEAFANDFRSCIYDHKDENDFIHAW EAMLEIYNLKQNEWLKWMYREREKWAVVYDRNTFFIDMKCSHLGESLSNKLRRHLNSD QDVLQFFKHFERVVDEQRYKEIEASDEMSHCKPKLMGNVILLKHASEIYTPKAFEVFQ CEYEKCLNVVANQCSQNGYLSEYKVNTFGQSQEYTVTFDSSDDTVICSCMKFEYVGFL CSHALRVLDHRNIKVVPSRYILRRWTKDARIGCAREDSDFIIQENPKLVAARRYRDMC RCILNISARAAESDDAFHFASRQLNEIIVGLEKILTLKAEEAQVIASSSSGASASDSE NAEIFLDGHAIEDQDESSRVQSKKENEAVVPHRQKQKNVPERGSKTKGVQNKRSNSPN TITSISSPSPTYVSPQASGPAPVMQGLFNFEANQVVQCIYQQPNMVMEQEPNAEMYQQ PNFYTDQHDSPSQTQLLQQEPLIRSTYQESASNSTHLRQAMELDIQPPHSSSFLLYDH RYRTSDTPFLGPK" gene 26253923..26257179 /locus_tag="TCM_015108" /note="dbxref CacaoGD:Thecc1EG015108" mRNA join(26253923..26254375,26254518..26254771, 26254988..26255312,26255476..26255625,26255741..26255992, 26256059..26256148,26256241..26256319,26256425..26256531, 26256621..26256748,26256843..26257179) /locus_tag="TCM_015108" /product="Cytochrome P450, family 87, subfamily A, polypeptide 2, putative" /inference="alignment:exonerate- protein:2:ricco:28448.m000359.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016188t1" /inference="similar to AA sequence:Phytozome:GSVIVT01010606001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2713t1" CDS join(26254575..26254771,26254988..26255312, 26255476..26255625,26255741..26255992,26256059..26256148, 26256241..26256319,26256425..26256531,26256621..26256748, 26256843..26256957) /locus_tag="TCM_015108" /note="paralog of Thecc1EG016188t1" /codon_start=1 /product="Cytochrome P450, family 87, subfamily A, polypeptide 2, putative" /protein_id="EOY23116.1" /db_xref="Phytozome:GSVIVT01010606001" /db_xref="TAIR:AT1G12740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TMV2" /translation="MPCSLLCIAVIFLGIALWIYNWRNPRCNGKLPPGSMGLPIVGES FQFFSPYTTSDVSPFIKKRMDRYGSLFRTSLVGRKIVVSTDPEVNRFIFQQEGRLVQT WYMDSFDDIVGKENILSSHGFLHKYLRNLILNLFGSKSLKERLLSETEELTVKNLQLW SCEPGVELKQAMATMIYNFTVKKLFSCNDPRSAKKLRACYSAFLDGLISFPLNIPGTA YWKCLQGRNKAMKVIKSMLEERRASPKRQQKDFLDIVVEEMKKAETILSEQTALDLLF ALPFAAFESASSAVVLALQYLRNNPLALAELTQEHEAILTERETKDSGITWKEYKSMT FTHMVINETIRLGNIVPAIFRKVVKDVEVKGYTIPAGWIILACTPAVHLNSEIYEDPL SFNPWRWKGRELNAGSKFFMGFGSGVRLCAGAEFVKLQMSIFLHHLVTKYRWTVIKEG DAARQPGLVFPEGFHVQISKKNSCQNVAEL" gene 26258556..26263990 /locus_tag="TCM_015109" /note="dbxref CacaoGD:Thecc1EG015109" mRNA join(26258556..26259064,26261391..26261591, 26262333..26262410,26262730..26263990) /locus_tag="TCM_015109" /product="IQ-domain 24, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014291" /inference="similar to AA sequence:ricco:30147.m014291" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9143t1" CDS join(26258720..26259064,26261391..26261591, 26262333..26262410,26262730..26263482) /locus_tag="TCM_015109" /note="dbxref ricco:30147.m014291" /codon_start=1 /product="IQ-domain 24, putative" /protein_id="EOY23117.1" /db_xref="TAIR:AT5G07240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID65" /translation="MGLFRRLFGAKKSAQARPDRDRRRWSFARSSNPTSSSSHRDALS GSCDDTLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGGGGAGGSNRRLAQEM AAVKMQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQARAR ASRAYVTKSFDSAGKMSQSRNAVPASSVKDECQLRAYSTKFDGPSILKRCGSNSNLGD IIDLEKARMGSNWLDRWMEESLWNNNRDVPLRHGHVDDEKSDKILEVDTWKPHLNTQQ SNRNFRASQHGSAWDYNHSFMTYDSPRKLSGKASNPLPNLTSAEVLALSSLKYPGGKD EAVLRTADNSPQVLSASSRPGSSARRSPFTPARSECSWGYLSGCSGHPNYMANTESSR AKYRSQSAPRQRLEFDKYGSTRRTFQGLWDSGTNSERDFPQHVDFRYRVHPASGGLNR LGSANQRE" gene complement(26264180..26265514) /locus_tag="TCM_015110" /note="dbxref CacaoGD:Thecc1EG015110" mRNA complement(join(26264180..26264874,26265096..26265514)) /locus_tag="TCM_015110" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010603001" /inference="similar to AA sequence:ricco:30147.m014290" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6874t1" CDS complement(join(26264776..26264874,26265096..26265473)) /locus_tag="TCM_015110" /note="dbxref ricco:30147.m014290" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /protein_id="EOY23118.1" /db_xref="TAIR:AT5G62065.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4A6" /translation="MGGHGIMIGVLMLLSWAISTAAAVDCTTVTGLLSTCSAFITYGS PDPYPGSPCCDAVMNLNLIADSTDNRKSVCGCLMGLITTYNPNSTAIATLPGFCGVAL GFTIDPNTDCNLYILQSLPKNHRHGMQGGSNEETYGGSNKKLPSATDRRTKILHKQ" gene complement(26266197..26269620) /locus_tag="TCM_015111" /note="dbxref CacaoGD:Thecc1EG015111" mRNA complement(join(26266197..26266530,26267075..26267325, 26267518..26267681,26267868..26268031,26268808..26269620)) /locus_tag="TCM_015111" /product="RHOMBOID-like 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s13370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016192t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13320.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9142t1" CDS complement(join(26266416..26266530,26267075..26267325, 26267518..26267681,26267868..26268031,26268808..26269118)) /locus_tag="TCM_015111" /note="paralog of Thecc1EG016192t1" /codon_start=1 /product="RHOMBOID-like 2" /protein_id="EOY23119.1" /db_xref="Phytozome:POPTR_0015s13320.1" /db_xref="TAIR:AT5G07250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYP1" /translation="MPGDDIESRGGVVKRNRNNSNATSSGYSSSLTYMIEDTETQWTS WLVPMFVVANIAVFVVVMYVNNCPKQRHTRLVGKCVARFLGRFSFEPLRENPLFGPSS STLKKLGALAWNKVVLKHQGWRLVTCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVR IGILYLLSGFGGSVLSSLFIQNSISVGASGALFGLLGAMLSELITNWTIYTNKAAALL TLLVVIAINLAIGILPHVDNFAHIGGFLTGFLLGFVLLPRPQCGWLERRNLPAGTRLK SKYRPYQYVLWLVSVVLLVVGFTVALVMLFRGENGNDHCHWCHYLSCVPTSRWNCNEN " gene complement(26270343..26271638) /locus_tag="TCM_015112" /note="dbxref CacaoGD:Thecc1EG015112" mRNA complement(26270343..26271638) /locus_tag="TCM_015112" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(26271252..26271563) /locus_tag="TCM_015112" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23120.1" /translation="MNYDCHRSRAESGLQVTRSTTVSTLSSPSQQNLPTTGKKKLQLV LDKNHESTGVHVHQQHTYKLHHAVAINLVSSTSFDVVVVDCHFIPDSLHESFDTANPT S" gene complement(26271791..26274061) /locus_tag="TCM_015113" /note="dbxref CacaoGD:Thecc1EG015113" mRNA complement(join(26271791..26272670,26272761..26272909, 26273004..26273105,26273236..26273311,26273929..26274061)) /locus_tag="TCM_015113" /product="60S ribosomal protein L24-1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043464t2" /inference="similar to AA sequence:frave:gene13307" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9199t1" CDS complement(join(26272514..26272670,26272761..26272909, 26273004..26273105,26273236..26273311,26273929..26273939)) /locus_tag="TCM_015113" /note="dbxref frave:gene13307; paralog of Thecc1EG043464t2" /codon_start=1 /product="60S ribosomal protein L24-1" /protein_id="EOY23121.1" /db_xref="TAIR:AT2G36620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42347" /translation="MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHN RLKPSKLTWTAMYRKQHKKDIAAEAVKKRRRTTKRPYSRSIVGATLEVIQKRRTEKPE VRDAAREAALREIKERIKKTKDEKKAKKAELMSKQQKTQSKGSLPKGAAPKGPKLGGG GGKR" mobile_element 26274232..26274597 /note="source:CACAO_PIF_E144_scaffold_10 1203 1559" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(26274720..26275390) /note="source:INTACT622F_F362_scaffold_4-int 10274 11814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26275391..26276171 /note="source:scaffold_1_CACTA_0011 12712 13486" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26276171..26276278 /note="source:CACAO_PIF_E144_scaffold_10 1801 1877" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26279676..26279732 /note="source:CACAO_MITE_S153_scaffold_6 903 959" /mobile_element_type="transposon:TIR/MITE" gene 26280947..26287985 /locus_tag="TCM_015114" /note="dbxref CacaoGD:Thecc1EG015114" mRNA join(26280947..26281356,26281486..26281495, 26281513..26281612,26282790..26283004,26283128..26283245, 26283344..26284006,26284359..26284460,26284533..26284745, 26286068..26286242,26286328..26286695,26286809..26287985) /locus_tag="TCM_015114" /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014288" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005412t1" /inference="similar to AA sequence:ricco:30147.m014288" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc642t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6900t3" mRNA join(26281193..26281356,26281486..26281612, 26282464..26282625,26282790..26283004,26283128..26283245, 26283344..26284006,26284359..26284460,26284533..26284745, 26286068..26286242,26286328..26286695,26286809..26287985) /locus_tag="TCM_015114" /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014288" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005412t1" /inference="similar to AA sequence:ricco:30147.m014288" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6900t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6900t3" mRNA join(26281193..26281356,26281486..26281612, 26282790..26283004,26283128..26283245,26283344..26284006, 26284359..26284460,26284533..26284745,26286068..26286242, 26286328..26286695,26286809..26287985) /locus_tag="TCM_015114" /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014288" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005412t1" /inference="similar to AA sequence:ricco:30147.m014288" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6900t2; alternateUTRof:Thecc1EG015114t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6900t3" mRNA join(26281193..26281356,26281486..26281612, 26282790..26283004,26283128..26283245,26284359..26284460, 26284533..26284745,26286068..26286242,26286328..26286695, 26286809..26287985) /locus_tag="TCM_015114" /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m014288" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005412t2" /inference="similar to AA sequence:ricco:30147.m014288" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6900t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6900t3" CDS join(26282491..26282625,26282790..26283004, 26283128..26283245,26283344..26284006,26284359..26284460, 26284533..26284745,26286068..26286242,26286328..26286695, 26286809..26287204) /locus_tag="TCM_015114" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014288; paralog of Thecc1EG005412t1" /codon_start=1 /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1" /protein_id="EOY23122.1" /db_xref="TAIR:AT4G00730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID61" /translation="MGARIVVADIVPPSNMLSGAIVEPPLLTQHIPKSMQSSPSLSLS YKRMDAHGEMGLIGENFDPGLVGRMKEDGYESRSGSDNFEGASGDDQDAADDGRPKKK KYHRHTPHQIQELESFFKECPHPDEKQRLELSRRLALESKQIKFWFQNRRTQMKTQLE RHENVILRQENDKLRAENDLLKQAMSSPTCNSCGGPAVPGEISYEQHQLRIENARLKD ELNRICALTNKFLGRPLSSSASPIPSQGLNSNLELAVGRNDFGGLNNAGTTLPMGFDF VDGAMMPLMKTMANEMPYDRSALVDIALAAMDELIKMVQMDSPLWIKGLDGGMETLNH EEYRRTFSSCIGMKPSGYATEATRETGLVFLRGLALVETLMDANRWAEMFPCMISRVA TIDVLSSATGVTRDNTLQVMDAEFQVLSPLVPVRQVRFLRFCKQHTERVWAVVDVSID ASQDAASAQMFPNCRRLPSGCVIQDMDNKYSKVTWVEHSEYDDSAVHHLLRPLLSYGF GFGAHRWLATLQRQCDCLAVLMSPNIPGEENTGITPAGRKNMLKLAQRMTYNFCAGVC ASSVHKWDKLSVGNVGEDVRVMTRKNIDDPGEPAGVVLSAATSVWMPITQQRLFDFLR DERMRSQWDILSNGGPMQGMVKIAKGPGHGNCVSLLRGSAINANENNMLILQETWSDA SGALVVYAPVDISSIGVVMNGGDSAYVALLPSGFAILPGISPSYHGGQSNSNGPMVKP DIDGSISGGCLLTVGFQILVNSLPTAKLTVESVETVNNLISCTIQKIKAALTVT" CDS join(26282796..26283004,26283128..26283245, 26283344..26284006,26284359..26284460,26284533..26284745, 26286068..26286242,26286328..26286695,26286809..26287204) /locus_tag="TCM_015114" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014288; paralog of Thecc1EG005412t1" /codon_start=1 /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein, putative isoform 2" /protein_id="EOY23123.1" /db_xref="TAIR:AT4G00730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID61" /translation="MDAHGEMGLIGENFDPGLVGRMKEDGYESRSGSDNFEGASGDDQ DAADDGRPKKKKYHRHTPHQIQELESFFKECPHPDEKQRLELSRRLALESKQIKFWFQ NRRTQMKTQLERHENVILRQENDKLRAENDLLKQAMSSPTCNSCGGPAVPGEISYEQH QLRIENARLKDELNRICALTNKFLGRPLSSSASPIPSQGLNSNLELAVGRNDFGGLNN AGTTLPMGFDFVDGAMMPLMKTMANEMPYDRSALVDIALAAMDELIKMVQMDSPLWIK GLDGGMETLNHEEYRRTFSSCIGMKPSGYATEATRETGLVFLRGLALVETLMDANRWA EMFPCMISRVATIDVLSSATGVTRDNTLQVMDAEFQVLSPLVPVRQVRFLRFCKQHTE RVWAVVDVSIDASQDAASAQMFPNCRRLPSGCVIQDMDNKYSKVTWVEHSEYDDSAVH HLLRPLLSYGFGFGAHRWLATLQRQCDCLAVLMSPNIPGEENTGITPAGRKNMLKLAQ RMTYNFCAGVCASSVHKWDKLSVGNVGEDVRVMTRKNIDDPGEPAGVVLSAATSVWMP ITQQRLFDFLRDERMRSQWDILSNGGPMQGMVKIAKGPGHGNCVSLLRGSAINANENN MLILQETWSDASGALVVYAPVDISSIGVVMNGGDSAYVALLPSGFAILPGISPSYHGG QSNSNGPMVKPDIDGSISGGCLLTVGFQILVNSLPTAKLTVESVETVNNLISCTIQKI KAALTVT" CDS join(26282796..26283004,26283128..26283245, 26283344..26284006,26284359..26284460,26284533..26284745, 26286068..26286242,26286328..26286695,26286809..26287204) /locus_tag="TCM_015114" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014288; paralog of Thecc1EG005412t1" /codon_start=1 /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein, putative isoform 2" /protein_id="EOY23124.1" /db_xref="TAIR:AT4G00730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID61" /translation="MDAHGEMGLIGENFDPGLVGRMKEDGYESRSGSDNFEGASGDDQ DAADDGRPKKKKYHRHTPHQIQELESFFKECPHPDEKQRLELSRRLALESKQIKFWFQ NRRTQMKTQLERHENVILRQENDKLRAENDLLKQAMSSPTCNSCGGPAVPGEISYEQH QLRIENARLKDELNRICALTNKFLGRPLSSSASPIPSQGLNSNLELAVGRNDFGGLNN AGTTLPMGFDFVDGAMMPLMKTMANEMPYDRSALVDIALAAMDELIKMVQMDSPLWIK GLDGGMETLNHEEYRRTFSSCIGMKPSGYATEATRETGLVFLRGLALVETLMDANRWA EMFPCMISRVATIDVLSSATGVTRDNTLQVMDAEFQVLSPLVPVRQVRFLRFCKQHTE RVWAVVDVSIDASQDAASAQMFPNCRRLPSGCVIQDMDNKYSKVTWVEHSEYDDSAVH HLLRPLLSYGFGFGAHRWLATLQRQCDCLAVLMSPNIPGEENTGITPAGRKNMLKLAQ RMTYNFCAGVCASSVHKWDKLSVGNVGEDVRVMTRKNIDDPGEPAGVVLSAATSVWMP ITQQRLFDFLRDERMRSQWDILSNGGPMQGMVKIAKGPGHGNCVSLLRGSAINANENN MLILQETWSDASGALVVYAPVDISSIGVVMNGGDSAYVALLPSGFAILPGISPSYHGG QSNSNGPMVKPDIDGSISGGCLLTVGFQILVNSLPTAKLTVESVETVNNLISCTIQKI KAALTVT" CDS join(26282796..26283004,26283128..26283245, 26284359..26284460,26284533..26284745,26286068..26286242, 26286328..26286695,26286809..26287204) /locus_tag="TCM_015114" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m014288; paralog of Thecc1EG005412t2" /codon_start=1 /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 4" /protein_id="EOY23125.1" /db_xref="TAIR:AT4G00730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID61" /translation="MDAHGEMGLIGENFDPGLVGRMKEDGYESRSGSDNFEGASGDDQ DAADDGRPKKKKYHRHTPHQIQELESFFKECPHPDEKQRLELSRRLALESKQIKFWFQ NRRTQMKNRWAEMFPCMISRVATIDVLSSATGVTRDNTLQVMDAEFQVLSPLVPVRQV RFLRFCKQHTERVWAVVDVSIDASQDAASAQMFPNCRRLPSGCVIQDMDNKYSKVTWV EHSEYDDSAVHHLLRPLLSYGFGFGAHRWLATLQRQCDCLAVLMSPNIPGEENTGITP AGRKNMLKLAQRMTYNFCAGVCASSVHKWDKLSVGNVGEDVRVMTRKNIDDPGEPAGV VLSAATSVWMPITQQRLFDFLRDERMRSQWDILSNGGPMQGMVKIAKGPGHGNCVSLL RGSAINANENNMLILQETWSDASGALVVYAPVDISSIGVVMNGGDSAYVALLPSGFAI LPGISPSYHGGQSNSNGPMVKPDIDGSISGGCLLTVGFQILVNSLPTAKLTVESVETV NNLISCTIQKIKAALTVT" gene 26288488..26292872 /locus_tag="TCM_015115" /note="dbxref CacaoGD:Thecc1EG015115" mRNA join(26288488..26290261,26290368..26290426, 26292496..26292872) /locus_tag="TCM_015115" /product="Ubiquitin carboxyl-terminal hydrolase family protein" /inference="alignment:exonerate- protein:2:ricco:30147.m014286" /inference="similar to AA sequence:ricco:30147.m014286" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1874t3" CDS 26288559..26289983 /locus_tag="TCM_015115" /note="dbxref ricco:30147.m014286" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase family protein" /protein_id="EOY23126.1" /db_xref="TAIR:AT4G33495.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q689D6" /translation="MLVFFTYTSNLLKPRTPTPLRPLPSILFYNFTSQKLMSQSTSIP KKQQRVRDHGYDNYMEVEKKTRKVLKFQSLILSQPNQTLPISRFDSLARRLGLGFKQN EAGAYLLKFPHVFEIYEHPVQRILYCRLTRKALLQIDRKKEALNAQIPDAVTRLRKLL MMSNTGRLRLEHVRIARKEFGLPDDFEYSVILNHPQFFRLFDATETRNKYIEIVERDP KLAVCAIGTVREREYREKGFDAEDIRFSFIVNFPPGFKIGKYYRIAVWKWQRVPYWSP YEDVSGYDLRSIEAQKRMEKRAVATIHELLSLTVEKKITLERIAHFRMAMNLPKKLKD FLLQHQGIFYVSTRGNYGKLHTVFLREAYRKGELIEPNDLYLARRKLGELVLISPRKA KVDKELVSFKRDREGDEVERVRRDYVENDFEDFGVEGKVGQDGEGKDGSDSDLVSDIE CHYTDEDEDFDETMDQKKDACGTE" gene 26293912..26299532 /locus_tag="TCM_015116" /note="dbxref CacaoGD:Thecc1EG015116" mRNA join(26293912..26294118,26294474..26294744, 26294878..26294935,26296159..26296320,26296411..26296469, 26296549..26296595,26296705..26296848,26297488..26297579, 26298420..26299519) /locus_tag="TCM_015116" /product="XB3 in isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010599001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038574t2" /inference="similar to AA sequence:Phytozome:GSVIVT01010599001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc402t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6940t1" mRNA join(26293983..26294118,26294474..26294744, 26294878..26294937,26295395..26295466,26295671..26295855, 26296160..26296320,26296411..26296469,26296549..26296595, 26296705..26296848,26297488..26297579,26298420..26299532) /locus_tag="TCM_015116" /product="XB3 in isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010599001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038574t2" /inference="similar to AA sequence:Phytozome:GSVIVT01010599001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6940t1" mRNA join(26293996..26294744,26294878..26294937, 26295395..26295466,26295671..26295855,26296160..26296320, 26296411..26296469,26296549..26296595,26296705..26296848, 26297488..26297579,26298420..26299519) /locus_tag="TCM_015116" /product="XB3 in isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010599001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038574t2" /inference="similar to AA sequence:Phytozome:GSVIVT01010599001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6940t3; alternateUTRof:Thecc1EG015116t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6940t1" mRNA join(26294471..26294744,26294878..26294935, 26296159..26296320,26296411..26296469,26296549..26296595, 26296705..26296848,26297488..26297579,26298420..26299519) /locus_tag="TCM_015116" /product="XB3 in isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010599001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038574t2" /inference="similar to AA sequence:Phytozome:GSVIVT01010599001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc402t13; alternateUTRof:Thecc1EG015116t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6940t1" CDS join(26294568..26294744,26294878..26294937, 26295395..26295466,26295671..26295855,26296160..26296320, 26296411..26296469,26296549..26296595,26296705..26296848, 26297488..26297579,26298420..26298955) /locus_tag="TCM_015116" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG038574t2" /codon_start=1 /product="XB3 in isoform 1" /protein_id="EOY23127.1" /db_xref="Phytozome:GSVIVT01010599001" /db_xref="TAIR:AT5G07270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4FE45" /translation="MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGG LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRC NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSAPFEVINTQIEGERGDGSGVRN KNDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSTVTFHYGTSMDLI GAGSTPLHYAACGGNLKCCQILLARGASRVTLNCNGWLPLDVARMWGRHWLEPLLAPN SDTTIPRFPSSNYLSLPLLSVLNIARECGLQSSTTSSDDADTCAVCLERACSVAAEGC GHELCVRCALYLCSTSHIPSNMVAPPGSIPCPLCRHGILSFTKLPSSPAKEIKLHLSL GLCTPCMLHPRDADCLSPASEIRKNRVASVSSDLFCPVTCSPFPSVAIPLCTCNDGPC PSFEPRETETQDESPRRSQATSVDQDKIEGPRLERTTCSSMFWGRRSCSREHQCNSEI NA" CDS join(26294568..26294744,26294878..26294937, 26295395..26295466,26295671..26295855,26296160..26296320, 26296411..26296469,26296549..26296595,26296705..26296848, 26297488..26297579,26298420..26298955) /locus_tag="TCM_015116" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG038574t2" /codon_start=1 /product="XB3 in isoform 1" /protein_id="EOY23128.1" /db_xref="Phytozome:GSVIVT01010599001" /db_xref="TAIR:AT5G07270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4FE45" /translation="MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGG LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRC NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSAPFEVINTQIEGERGDGSGVRN KNDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSTVTFHYGTSMDLI GAGSTPLHYAACGGNLKCCQILLARGASRVTLNCNGWLPLDVARMWGRHWLEPLLAPN SDTTIPRFPSSNYLSLPLLSVLNIARECGLQSSTTSSDDADTCAVCLERACSVAAEGC GHELCVRCALYLCSTSHIPSNMVAPPGSIPCPLCRHGILSFTKLPSSPAKEIKLHLSL GLCTPCMLHPRDADCLSPASEIRKNRVASVSSDLFCPVTCSPFPSVAIPLCTCNDGPC PSFEPRETETQDESPRRSQATSVDQDKIEGPRLERTTCSSMFWGRRSCSREHQCNSEI NA" CDS join(26294568..26294744,26294878..26294935, 26296159..26296320,26296411..26296469,26296549..26296595, 26296705..26296848,26297488..26297579,26298420..26298955) /locus_tag="TCM_015116" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG038574t2" /codon_start=1 /product="XB3 in isoform 3" /protein_id="EOY23129.1" /db_xref="Phytozome:GSVIVT01010599001" /db_xref="TAIR:AT5G07270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4FE45" /translation="MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGG LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGRALSKFVNKAADGGITALHMAALN GYFDCVQLLLDLHANVSTVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGAS RVTLNCNGWLPLDVARMWGRHWLEPLLAPNSDTTIPRFPSSNYLSLPLLSVLNIAREC GLQSSTTSSDDADTCAVCLERACSVAAEGCGHELCVRCALYLCSTSHIPSNMVAPPGS IPCPLCRHGILSFTKLPSSPAKEIKLHLSLGLCTPCMLHPRDADCLSPASEIRKNRVA SVSSDLFCPVTCSPFPSVAIPLCTCNDGPCPSFEPRETETQDESPRRSQATSVDQDKI EGPRLERTTCSSMFWGRRSCSREHQCNSEINA" CDS join(26294568..26294744,26294878..26294935, 26296159..26296320,26296411..26296469,26296549..26296595, 26296705..26296848,26297488..26297579,26298420..26298955) /locus_tag="TCM_015116" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG038574t2" /codon_start=1 /product="XB3 in isoform 3" /protein_id="EOY23130.1" /db_xref="Phytozome:GSVIVT01010599001" /db_xref="TAIR:AT5G07270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4FE45" /translation="MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGG LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGRALSKFVNKAADGGITALHMAALN GYFDCVQLLLDLHANVSTVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGAS RVTLNCNGWLPLDVARMWGRHWLEPLLAPNSDTTIPRFPSSNYLSLPLLSVLNIAREC GLQSSTTSSDDADTCAVCLERACSVAAEGCGHELCVRCALYLCSTSHIPSNMVAPPGS IPCPLCRHGILSFTKLPSSPAKEIKLHLSLGLCTPCMLHPRDADCLSPASEIRKNRVA SVSSDLFCPVTCSPFPSVAIPLCTCNDGPCPSFEPRETETQDESPRRSQATSVDQDKI EGPRLERTTCSSMFWGRRSCSREHQCNSEINA" gene complement(26299934..26301135) /locus_tag="TCM_015117" /note="dbxref CacaoGD:Thecc1EG015117" mRNA complement(join(26299934..26300410,26300514..26300590, 26300672..26300733,26300854..26301135)) /locus_tag="TCM_015117" /product="PEBP family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13370.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041439t1" /inference="similar to AA sequence:Phytozome:Glyma16g32080.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15308t00001" CDS complement(join(26300193..26300410,26300514..26300590, 26300672..26300733,26300854..26301054)) /locus_tag="TCM_015117" /note="paralog of Thecc1EG041439t1" /codon_start=1 /product="PEBP family protein" /protein_id="EOY23131.1" /db_xref="Phytozome:Glyma16g32080.2" /db_xref="TAIR:AT5G62040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2WNM6" /translation="MSRVPEPLTVGRVIGEVVDNFTPSVKMTVTYNSNKQVANGHELM PAVIVARPRVEIGGEDMRAAYTLILTDPDAPSPSDPYLREHLHCPQSKLQTNISSRMV TDIPGTTDASFGREVVSYETPKPTVGIHRYVFILFKQRGRQTVRPPTSRDYFNTRRFS QENGLGLPVAAVYFNAQRETAARRR" gene 26309478..26314149 /locus_tag="TCM_015118" /note="dbxref CacaoGD:Thecc1EG015118" mRNA 26309478..26314149 /locus_tag="TCM_015118" /product="Leucine-rich repeat transmembrane protein kinase, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014283" /inference="similar to AA sequence:ricco:30147.m014283" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc337t7" CDS 26309816..26313640 /locus_tag="TCM_015118" /note="dbxref ricco:30147.m014283" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase, putative" /protein_id="EOY23132.1" /db_xref="TAIR:AT5G07280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BZW0" /translation="MEFKLLLQFLCFSHLLLLISGAIREQGERNPDREVLVSFKTGLQ NRHLLSSWNQKIHYCKWDGVTCQLGRVTTLALPSRSLKGPLSPSLSSLSSLTVLDLSA NFLFGQIPTELSELTLLETLKLGSNFFTGKIPPELGGLKALRKLDLSTNALSGTVPSQ LGQLTQLQFLDLGNNFISGSLPSTLFRNLQSLTSLDISNNSFSGNIPPEIGELKNLTA LYIGINQFTGRLPPEIGKLSLLENFFSPSCSMAGPLPEELSNLKSLSKLDLSYNPLKC SIPKSIGKLQNLSILNLVYSELNGSVPAELGNCQNLKMLMLSFNSLSGSLPEELSNLP ILTFSAEKNQLSGPLPPWLGKWNQVESLLLSSNRFSGNIPPQIGNCSMLKHLSLSNNM LAGWIPRELCNAESLLEIDLDGNNLSGSIENVFVKCRNLTQLVLVNNHINGSIPEYLS ELPLMVIDLDSNNFTGSIPVSLWSSTNLMEFSAGNNMLEGSLPVEIGNAVILETLVLS NNHLTGSIPKEIGNLTALSVLNLNSNFLQGHIPVEIGDCTALTTLDLGNNNFSGSIPV ELADLDQLQCLVLSHNNLSGSIASKPSSYFHQANMPDLSFVQHHGVFDLSNNRLSGPI PEELGNCVVVVDLLLNNNMLTGKIPGSLSRLTNLTTLDLSGNLLTGSIPIEFGDSLKL QGLYLGNNQLTGTIPGSLGQVGSLVKLNLTGNKLSGVVPASFGNLNELTHLDLSHNEL AGELPSSLSQMLNLVGIYVQQNRLSGTLDNLFPISLAWKIEDMNFSNNIFDGNLPQSL GNLSYLTYLDLHGNKFTGEIPSEIGNLMQLEYFDASGNRLSGQIPENLCGLFGLFYLN LAENRLGGPVPRNGICQNLSRIFLAGNNDLCGRIMGLECQVRSFDRSSLLNAWGLAGV VAGSVFIIFTSAFALRRWITRSSQHSDPEEIEESKLSSFMDQNLYFLSSSRSKEPLSI NIAMFEQPLLKLTLADILEGTNHFCKTNIIGDGGFGTVYKATLPSGKTVAVKKLSQAK TQGHREFIAEMETLGKVKHQNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRSGAL DALDWSKRFKIAMGAARGLAFLHHGFIPHIIHRDIKASNILLSEDFEAKVADFGLARL ISACETHVSTDIAGTFGYIPPEYGQSGRSTTKGDVYSFGVILLELVTGKEPTGPDFKE IEGGNLVGWASKKIKKGQAADVLDAMVLNADSKQMMLQALSIAAVCLSDNPANRPTML HVLKLLKGIKDE" mobile_element 26314109..26319052 /note="source:CACAO_M_E22942_F59_scaffold_3 1 4944" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(26320623..26322633) /locus_tag="TCM_015119" /note="dbxref CacaoGD:Thecc1EG015119" mRNA complement(join(26320623..26322026,26322148..26322633)) /locus_tag="TCM_015119" /product="Heat shock transcription factor B2A, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014282" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016198t1" /inference="similar to AA sequence:ricco:30147.m014282" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9170t2" CDS complement(join(26321316..26322026,26322148..26322408)) /locus_tag="TCM_015119" /note="dbxref ricco:30147.m014282; paralog of Thecc1EG016198t1" /codon_start=1 /product="Heat shock transcription factor B2A, putative" /protein_id="EOY23133.1" /db_xref="TAIR:AT5G62020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZJ28" /translation="MAPPPVEQNGEETTAAAAGESQRSVPTPFLTKTYQLVDDHTIDD VISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSND CFRRGEKRLLCEIQRRKIMMPTTAAITVSTMTAIPIAKPIISPSNSGDEQSPVISSTS SPSRPGQTGSVTAELREENEKLRKENVQLNKQLAEMKSLCNNIFNLMSNYASSQSESS FAATKPLDLLPVKRLSEEGEDEETSPRLFGVPIGGVKRAREVGESLAAEDETQLQLQQ PGGSGTASEMIKSEPLDRQNAGCDDERGNQDTPWLRQFHRANQRVCN" mobile_element complement(26322833..26322923) /note="source:scaffold_8_CACTA_0855 2502 2601" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26323024..26323376) /note="source:scaffold_8_CACTA_0855 1991 2337" /mobile_element_type="transposon:TIR/CACTA" gene complement(26325490..26328711) /locus_tag="TCM_015120" /note="dbxref CacaoGD:Thecc1EG015120" mRNA complement(join(26325490..26325730,26326930..26327480, 26327571..26328711)) /locus_tag="TCM_015120" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13400.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13400.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2103t2" CDS complement(join(26327310..26327480,26327571..26328704)) /locus_tag="TCM_015120" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23134.1" /db_xref="Phytozome:POPTR_0015s13400.1" /db_xref="TAIR:AT5G52180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID55" /translation="MLPFFQVYKNLILQTLLSLSLTLILTFLKIPIFFLQGLHTYIQP ENVGHGNNASSGVRAAIRRPSSSDSGPGLEGYQSLSSRTNAELKKRNKSKDKLEFDEN NAQIFRLKLDEGHLQTRLFFNEYHNSFVFSFVGISCLLLYKYLGQSEGSGVLANGNLI PVIFGFIGLTKVLLALAKISFEKSASKRSEKQFSAIFGVVGFLIGIMICSGIGRSVSD FRFDSVEGPWRIFVAVLMGFLSGFLYMPAGKNARSFWLGTDQLRCNLSIISCGWFARM ILYANYLFTVFTALLWINPLAEILVNKNGYNGRGAVEKLVGNVGFSKLDFTRLRVLCL LLSGILQIMALRSNLQMFLNEAVLSWYQRLHASKVPDLDFSRAKIDSNSFDKYSLVCG LLPCSAFVKEVALFMAWWIIFVWAIVTSASLVFYRHGVLYVF" gene complement(26331855..26332401) /locus_tag="TCM_015121" /note="dbxref CacaoGD:Thecc1EG015121" mRNA complement(26331855..26332401) /locus_tag="TCM_015121" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS complement(26331950..26332177) /locus_tag="TCM_015121" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23135.1" /translation="MSFSILGEEGESIHATRRVYRRDWHGRQTTKHMGGCPFEAVLQQ YGKNADLRSTYVLVSEAKPIRFSVGNVSMRS" gene complement(26333631..26335432) /locus_tag="TCM_015122" /note="dbxref CacaoGD:Thecc1EG015122" mRNA complement(join(26333631..26334050,26334359..26334453, 26334975..26335432)) /locus_tag="TCM_015122" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014280" /inference="similar to AA sequence:Phytozome:POPTR_0015s13410.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b014609t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g09327t00001" mRNA complement(join(26333705..26334050,26334359..26334456, 26334975..26335257)) /locus_tag="TCM_015122" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014280" /inference="similar to AA sequence:ricco:30147.m014280" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09327t00001; inference alignment:Newbler:10:TSA:cgbaP1_g09327t00001" CDS complement(join(26333961..26334050,26334359..26334453, 26334975..26335185)) /locus_tag="TCM_015122" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY23137.1" /db_xref="Phytozome:POPTR_0015s13410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID54" /translation="MDSHVPSDRNDPWTNEKHVHFLNSMEAWFVRTMLENDGRHNLRL DRHLPDSSESTLDCKPNQTRKKHATSDFIGTTGSKRKGRPDKRARRPPSKPHDSSQDQ VVPQIENRTGDKDEEDLPNVPVASMAPAN" CDS complement(join(26333961..26334050,26334359..26334456, 26334975..26335185)) /locus_tag="TCM_015122" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014280" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23136.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID54" /translation="MDSHVPSDRNDPWTNEKHVHFLNSMEAWFVRTMLENDGRHNLRL DRHLPDSSESTLDCKPNQTRKKHATSVDFIGTTGSKRKGRPDKRARRPPSKPHDSSQD QVVPQIENRTGDKDEEDLPNVPVASMAPAN" mobile_element complement(26338101..26338783) /note="source:CACAO_MITE135_scaffold_9 101 820" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(26338584..26338808) /note="source:CACAO_on_E740_scaffold_10 59 289" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 26338699..26339982 /locus_tag="TCM_015124" /note="dbxref CacaoGD:Thecc1EG015124" mRNA join(26338699..26339288,26339409..26339982) /locus_tag="TCM_015124" /product="FAD-binding Berberine family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044592t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s16570.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" gene 26338789..26345443 /locus_tag="TCM_015125" /note="dbxref CacaoGD:Thecc1EG015125" mRNA join(26338789..26338899,26342997..26345443) /locus_tag="TCM_015125" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044592t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s46910.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc22t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6724t1" CDS join(26338869..26339288,26339409..26339795) /locus_tag="TCM_015124" /note="paralog of Thecc1EG044592t1" /codon_start=1 /product="FAD-binding Berberine family protein, putative" /protein_id="EOY23138.1" /db_xref="Phytozome:POPTR_0011s16570.1" /db_xref="TAIR:AT5G44440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKV2" /translation="MEEDLFWAIRGSYGIVLAWKLNLVPVPATVTVFSITKTLEQNAT ELIHRWQYAAHKFPDDIYLIVTITRVNSGQEGKDTIQAVFTVLGGVDNLISLMEKRFP ELGVVKQDCIAMCWIQSLLYLSQFPIEHLEILLDRSTAIPYGGKMDEIPETETPFPHR AGNMYKIIYNVRRAEEENLEFQKYINWIRRFYSHMTPNISKSPREAYVNYRDLEIGVN NKSNTSYAQASIWGFKYFKNDFNKLVPAKTLIDFENFFKHEQSIPPLSSL" mobile_element 26341030..26341349 /note="source:MITE_CACTA_8 1 320" /mobile_element_type="transposon:TIR/MITE" CDS 26343082..26344680 /locus_tag="TCM_015125" /note="paralog of Thecc1EG044592t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY23139.1" /db_xref="Phytozome:POPTR_0001s46910.1" /db_xref="TAIR:AT5G44440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q33DP2" /translation="MKSLRYSTFAFLFAILFSFSWETSALSHERFLHCLSLHSNDPSS ISKVIYSQNNHSYSSILESSIQNLRFSTIDTPKPLVIITPLHASHIQATIQCSRKHGL QIRSRSGGHDLEGLSYVSEVPFVLIDLVNLRSIDVNAENSVAWVEAGATLGELYFRIA EKSKTLAFPAGNCHTIGVGGHFSGGGYGGLLRKYGLAADNIIDAHLIDANGRILDRKS MGEDLFWAIRGGGGGSYGIVLDWKLKLVPVPATVTVFSVTKTLEQNATELIHRWQYVA HKLPNDIFLAVTIRRVNSGQEGKDTIQAVFAALFLGGVDNLVSLMEKRFPELGVVKQD CIEMSCIESFLYFGQFPLERLEILLDRTAVNKTLFKVKSDYVKEPIPKIVFEGMWQRF YEEEGKYGVIILIPYGGKMDEIPETETPFAHRAGNMYKIIYNVGRAEEENLEFQKYIN WIRRFYRHMTPYVSKSPRETYVNYRDLDIGVNNKGNTSYAQASIWGFKYFKNNFKKLV HVKTLVDPENFFKHEQSIPPLLSW" gene complement(26345296..26347163) /locus_tag="TCM_015126" /note="dbxref CacaoGD:Thecc1EG015126" mRNA complement(join(26345296..26345653,26345773..26345906, 26346005..26346112,26346742..26346759,26347122..26347163)) /locus_tag="TCM_015126" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage" gene complement(26345415..26348290) /locus_tag="TCM_015127" /note="dbxref CacaoGD:Thecc1EG015127" mRNA complement(join(26345415..26346759,26347122..26348290)) /locus_tag="TCM_015127" /product="Integrase, catalytic region, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025058t2" /note="quality class is medium-expresste, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1150t3" CDS complement(join(26345495..26345653,26345773..26345906, 26346005..26346112,26346742..26346748)) /locus_tag="TCM_015126" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23140.1" /translation="MEVVLSFAWPELVGLTKAEMVLPQGTKLNDSKYGFCFSGVYVVV PPWAMPLSFSADLPLCLLCWWHPYDVQQAFSMTSLFADLGSPLCCGYLCLSMGVYGLL RPLCSCRFRVVQGFVPPRDVFTSSFQGRCVSFA" CDS complement(26347536..26347934) /locus_tag="TCM_015127" /note="paralog of Thecc1EG025058t2" /codon_start=1 /product="Integrase, catalytic region, putative" /protein_id="EOY23141.1" /translation="MDSAYKMWNTLKQNFAQPDDTRVCNLQYILGNITEGTRSVDAYF IELKGFWEEMRNYSPLLHCECGSCNPVCFKKYSNQYHKDMVFRFLNGLNESLVAIRSQ IILMDPIPALDKVYSLKLREKSQRNVMIQP" mobile_element complement(26349958..26350229) /note="source:scaffold_6_CACTA_0699 11747 12015" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26351779..26352149) /note="source:scaffold_5_CACTA_0614 2187 2538" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26352149..26352890 /note="source:INTACT674_F296_scaffold_6-int 4597 5354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26352895..26353038) /note="source:INTACT473_F7_scaffold_3-int 7974 8098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26352999..26353377 /note="source:INTACT554_F250_scaffold_7-int 1713 2088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26353039..26353058) /note="source:CACAO_M_S_E38315_F276_scaffold_4 8503 8662" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(26353903..26354370) /note="source:INTACT59_F126_scaffold_9-int 33 431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26354459..26355004) /note="source:scaffold_5_CACTA_0614 1631 2190" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26355003..26355426) /note="source:scaffold_10_CACTA_0140 6836 7311" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26356182..26356401) /note="source:scaffold_5_CACTA_0614 1451 1639" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26357650..26366250 /note="source:INTACT8_F106_scaffold_3-int 1 8601" /mobile_element_type="retrotransposon:LTR/Copia" gene 26367363..26369604 /locus_tag="TCM_015129" /note="dbxref CacaoGD:Thecc1EG015129" mRNA 26367363..26369604 /locus_tag="TCM_015129" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46910.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015125t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s46910.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc747t1" CDS 26367389..26368987 /locus_tag="TCM_015129" /note="paralog of Thecc1EG015125t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY23142.1" /db_xref="Phytozome:POPTR_0001s46910.1" /db_xref="TAIR:AT5G44440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI25" /translation="MKLPPYSTFPFLFAILLQFSWAITARSHEKFLYCLSLHSNDSSS ISRVVYSENNHSYSSILESSFQNLRFFTIATPKPLVIVAPLHASHIQTTIYCSRKHGL QIRIRSGGHDMEGLSYVSEVPFVLIDLINLRSIDIDVDNSVAWVEAGATIGELYYRIA EKSRTLAFPAGTCHTVGVGGQFSGGGYGTLFRKYGLAADNIIDAHLIDSNGRILDRKS MGEDLFWAIRGGGGGSYGVVLAWKLKLVPVPANVTVFTVTRTLEQNATELIHRSQYVA HKLPNDLFIFVSISRVNSGQEGKETIQAVFRSLFLGGADKLFSLMEKRFPELGLVKQE CIEMSWIQSHLYFSDFPLERSEILLDRTAFTKGFIKVKSDYVKEPIPKIAFEGLWRRF YEEEGRYAAMNLIPYGGKMDEILETETPFPHRAGNLYKIMYTVAREEEENLEFQKYIR WIRRLYSYMTLYVSKSPREAYINYRDLDIGVNNKDNTSYARASIWGFKYFKNNFNKLV HVKTLVDPENFFKHEQSIPPLSSW" gene complement(26369603..26372574) /locus_tag="TCM_015130" /note="dbxref CacaoGD:Thecc1EG015130" mRNA complement(join(26369603..26370806,26372351..26372574)) /locus_tag="TCM_015130" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(26370509..26370806,26372351..26372436)) /locus_tag="TCM_015130" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23143.1" /translation="MATSYLTLKYEIKTIRKEGGQLPGLRLASLDEPVKACNPQLGRA WAGQLNTFLFIFSQFSPPPKPKNPNYKSNLFPSHNSHFSLCISPALLSSERRHPTKFR RVTVAALTTGDRYSPLAEASKYQNN" mobile_element complement(26371909..26372017) /note="source:INTACT622F_F362_scaffold_4-int 10269 10399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26372675..26376466 /note="source:INTACT578_F10_scaffold_3-int 1 3792" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(26376467..26378161) /note="source:scaffold_4_CACTA_0509 5739 7430" /mobile_element_type="transposon:TIR/CACTA" gene 26376478..26378821 /locus_tag="TCM_015132" /note="dbxref CacaoGD:Thecc1EG015132" mRNA join(26376478..26376686,26376773..26378821) /locus_tag="TCM_015132" /product="FAD-binding Berberine family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s16570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015140t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s16570.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01859t00002" CDS join(26376481..26376686,26376773..26378105) /locus_tag="TCM_015132" /note="paralog of Thecc1EG015140t1" /codon_start=1 /product="FAD-binding Berberine family protein, putative" /protein_id="EOY23144.1" /db_xref="Phytozome:POPTR_0011s16570.1" /db_xref="TAIR:AT4G20820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKV0" /translation="MKSPHLSMLPLLFAALFSLSGPTSAQTHENFLHCLSLRSNDSSS ISKVIYTQNNSSYTSVLESTALNLRKHGLQIRTRSGGHDFEGLSYVAEVPFVIVDLVN FRSIDVDVENEVVWVQSGVILGELSYGIAEKSRTLAFPAGTCHTVSTGGYFSGGGYGL LFRKYGLAVDNIIDAQFIDVNGRILDRKAMGEDLFWAIRGGGGGSFGIVLAWKLKLVH VLATVTVFSISKTLEQNAIKLLHRWQYISHDLPNEMYSSATLRRVNSSQDGKQTTQAS FSSLFLGGIDGLVPLMQERFPELGLTTEDCIEMSWIESILYFGQLQNESLDILLDRSF KTPLISPSYKGKSDYVKEPIPEIALKGLWSRLSEAEVESVVVGFFAYGGMMDEIPETA TPFPHRAGNLYKILYNVGWQEEDNINSESYISWVRGLYSYMSSFVSKSPREAYINYRD LDIGTNNKGNTSYAQASIWGRKYFKNNFDRLMHVKTMIDPENFFRHEQSIPPLFSSRK KKAH" gene 26381673..26385646 /locus_tag="TCM_015133" /note="dbxref CacaoGD:Thecc1EG015133" mRNA join(26381673..26384137,26385499..26385646) /locus_tag="TCM_015133" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s16560.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015140t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s16560.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7085t1" mobile_element complement(26381921..26383600) /note="source:scaffold_4_CACTA_0509 5808 7494" /mobile_element_type="transposon:TIR/CACTA" CDS 26381972..26383600 /locus_tag="TCM_015133" /note="paralog of Thecc1EG015140t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY23145.1" /db_xref="Phytozome:POPTR_0011s16560.1" /db_xref="TAIR:AT4G20820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q33DP2" /translation="MHKISFRKMKSPRFLVFSFLFAALFSLSRATSSRTHESFLHCLS LHSEDSSFISKIIYTQNNSSYSSVLEFSMHNLRFSTPTTPKPQVIITPFHESHIQATI YCSKKHRLQVRTRSGGHDFEGISYVSEVSFVIIDLINFRSIDIDVENKVAWVQSGAIL GELYYRIAEKSKTLAFPAGICHTVGVGGYFSGGGYGLLFRKYGLAADNIIDAQFIDVN GRILDRKAMGEDLFWAIRGGGGGSFGIVIAWKLKLVPVPATVTVFTISRTSEQNAIKL VHRWQYIAHQLPDGTFSFVVLRSVNSSQDGKKTVLASFNLFFLGGVDELVPLMQERFP ELGLVKEDCTEMSWIESILYFGQLQNKSLDILLDRTFQSPLLSPAFKAKSDYVKEPIP EIALEAILSKLHEEEAKSAGIFFLAYGGIMDEIPETATPFPHRAGNLYKILYTVGWQE EDNKNSQRYISWIRRVYSYMSSFVSKSPREAYINYRDLDIGINNKGSTSYAQASVWGH KYFKNNFDKLMRVKTMIDPENFFKHEQSIPPHLS" gene complement(26385873..26390760) /locus_tag="TCM_015134" /note="dbxref CacaoGD:Thecc1EG015134" mRNA complement(join(26385873..26386259,26386684..26386845, 26390708..26390760)) /locus_tag="TCM_015134" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g16506t00001" gene 26385926..26399081 /locus_tag="TCM_015135" /note="dbxref CacaoGD:Thecc1EG015135" mRNA join(26385926..26386630,26386691..26386790, 26388464..26390519,26398993..26399081) /locus_tag="TCM_015135" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s16570.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015133t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s16570.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7101t1" CDS complement(join(26386049..26386259,26386684..26386712)) /locus_tag="TCM_015134" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23146.1" /translation="MANTVTVAVSFVFLSNKLLLEINQWNSGGKGKTEKKGVFLLRLT ATAPRNVGNEFQFLILFQGKRNFLEEKEISKKIDG" CDS join(26386363..26386630,26386691..26386790, 26388464..26390099) /locus_tag="TCM_015135" /note="paralog of Thecc1EG015133t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY23147.1" /db_xref="Phytozome:POPTR_0011s16570.1" /db_xref="TAIR:AT4G20820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKV0" /translation="MMLHRFNLVQLFVNFITRLVKKNRTLVFPVRTCHSVGTGGYFNG GDYDLLFGKYDVIVDNIIDAQFIDVNGRILDRKVIREDLFWAIPGATVTVFAISKTLE QNAIKLLHRWQYIARDLPDEIFKKMKSPHFLVFSFLFAAFFSLSWATSAHTHESFLHC LSLHSEDSSFISKIIYAQNNSSYSSVLEFSMHNLRFSTPTTPKPQVIITPFYESHLQA TIYCSKKHGLQVRTRSGGHDFEGISYVSKVSFVIIDLINFRSIDIDVENKVAWVQSGA ILGELYYRIAKKSKTLAFPAGVCHTVGVGGYFSGGGYGLLFRKYGLAADNIIDAQFID VNGRILDRKAMGEDLFWAIRGGGGGSFGIVIAWKLKLVPIPATVTGCIVSKTLEQNAI KLVHRWQYIAHKLPDETYSSVALRRVNSSQDGKKTVLASFRLFFLGGVDELVPLMQER FSELGLVKEDCTEMSWIESILYFGQLRNKSLDVLLDRTFQSPLISPAFKAKSDYVKEP VPEIALEGLWSKLYEEEAKSAGVLFVAYGGEMDEIPETATPFPHRAGNLYKILYAVGW QKEDNNNSQRYVSWIRRVYSYMSSFVSKSPREAYINYRDLDIGTNNKDNTSYAQASVW GHKYFKNNFDKLISVKTMIDPENFFRHEQSIPPLLSRWKKRGN" mobile_element complement(26388397..26390079) /note="source:scaffold_4_CACTA_0509 5807 7494" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26391576..26394766 /note="source:CACAO_Again_on_S_E124_scaffold_3 1 3191" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(26395124..26396299) /note="source:INTACT36_F116_scaffold_6-int 3926 5105" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26396242..26396783 /note="source:INTACT257_F186_scaffold_6-int 11435 11975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26396992..26406680) /note="source:INTACT59_F126_scaffold_9-int 5259 14943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26404682..26410592 /note="source:INTACT257_F186_scaffold_6-int 12436 18301" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26410124..26410644) /note="source:INTACT555_F251_scaffold_2-int 11529 11989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26410550..26411065) /note="source:INTACT36_F116_scaffold_6-int 3321 3863" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26410604..26411113 /note="source:INTACT89_F140_scaffold_9-int 15485 15961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26411320..26411881) /note="source:INTACT59_F126_scaffold_9-int 15 580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26411530..26411982 /note="source:INTACT726_F314_scaffold_5-int 13495 13885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26411978..26412171 /note="source:CACAO_M_S_E50888_F253_scaffold_4 163 356" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26414149..26414598 /note="source:scaffold_2_CACTA_0244 18392 18811" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26414212..26414908) /note="source:CACAO_Again_on_E20_scaffold_1 8 745" /mobile_element_type="transposon:TIR/hAT" gene 26417200..26419502 /locus_tag="TCM_015140" /note="dbxref CacaoGD:Thecc1EG015140" mRNA 26417200..26419502 /locus_tag="TCM_015140" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s16570.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015133t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s16570.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00293t00001" mobile_element complement(26417207..26418881) /note="source:scaffold_4_CACTA_0509 5812 7494" /mobile_element_type="transposon:TIR/CACTA" CDS 26417257..26418906 /locus_tag="TCM_015140" /note="paralog of Thecc1EG015133t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY23148.1" /db_xref="Phytozome:POPTR_0011s16570.1" /db_xref="TAIR:AT4G20820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q33DP2" /translation="MHKISFRKMKSPHLLVYLFLFAALFSLSWATSAHTHERFLHCLS LRSEDSSFISKIIYTQHNSSYSSILEFSMHNLRFSTPSTAKPQVIITPFHTSHIQATI YCSKKHELQIRTRSGGHDFEGLSYVSEVPFVIIDLINFRSVDIDVENKIAWVQSGAVL GELYYRIAEKSKTLAFPAGICHTVGVGGYFSGGGYGLLFRKYGLAVDNIIDAQFIDVN GRILDRKAMGEDLFWAIRGGGGGSFGIVIAWKLKLVPVPATVTVFTISRTSEQNAIKL VHRWQYVAHKLPDGTFSLVGLSSVNSSQDGKKTILASFRLFFLGGVDELVPLMQERFP ELGLVKEDCTEMSWIESILYFGRIQNKSLDILLDRTFQSPLISPAFKAKSDYVKEPVP EIALEGLWSKLFEEEAKSAGIVFVAYGGIMDEIPETATPFPHRAGNLYKILYTVGWQK EDNKNSQKYISWIRRVYSYASSFVSQSPREAYINYRDLDIGINSKGNTSYAQASIWGY KYFRNNFDKLLRVKTMIDPENFFRHEQSIPPLLSVRKKRGN" gene 26419557..26440170 /locus_tag="TCM_015141" /note="dbxref CacaoGD:Thecc1EG015141" mRNA join(26419557..26419712,26437942..26440170) /locus_tag="TCM_015141" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s43120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015140t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s43120.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2006t6_C1" mobile_element 26428417..26431006 /note="source:CACAO_M_E22949_F74_scaffold_3 1 2590" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 26437950..26439566 /locus_tag="TCM_015141" /note="paralog of Thecc1EG015140t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY23149.1" /db_xref="Phytozome:POPTR_0001s43120.1" /db_xref="TAIR:AT4G20820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q33DP2" /translation="MGAPRISMLPVLLVVLFSLSGATLADSHDDFLHCLSLHSADSAS ISKVIFTQSNSSYLPILDVSIQNLRVSTSATPKPFVIVTPLQTSHIQTTIYCSKTHKL EIRIRSGGHDFEGLSYVSEVPFIILDLVNFRSIEVDTKNKVAWVESGATIGELYYRIV EKSKTLAFPAGVCHTIGVGGHFSGGGYGILMRKYGLAADHVIDAHLIDVNGRILDRKS MGEDLFWAIRGGGGNTFGVVLAWKVKLVPVPQVVTVFTVNKTLEQNATKILHRWQHIG HKLPDDLFTDVTITKVNSSQVGKKTIQAAFKALYLGGIDELIPLIQDRFPELGLVKQD CIEMSWVESVLYFGGVSRERLDILLDRNALPKQTFKAKSDYVKEPIPESGLEGIWEKF FEKEAEIAFMMMVAFGGKMDEIPEAALPYPHRAGNLYQASYLVAWSKEENAESQKYIS WIRRLYSYMTTYVSKSPREAYFNYRDLDIGTNNVGYTSYAQASIWGLKYFKNNFNRLV HVKTMVDPENFFKNEQSIPPLSSSPKNKGP" gene complement(26439334..26441948) /locus_tag="TCM_015143" /note="dbxref CacaoGD:Thecc1EG015143" mRNA complement(join(26439334..26439585,26441094..26441680)) /locus_tag="TCM_015143" /product="Sugar isomerase (SIS) family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13297" /inference="similar to AA sequence:frave:gene13297" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03202t00001; inference alignment:Newbler:10:TSA:cgbaB_g00293t00003; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc230t10" mRNA complement(join(26439489..26439562,26441094..26441948)) /locus_tag="TCM_015143" /product="Sugar isomerase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13297" /inference="similar to AA sequence:frave:gene13297" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00293t00003" mRNA complement(join(26439810..26440138,26441102..26441774)) /locus_tag="TCM_015143" /product="Sugar isomerase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13297" /inference="similar to AA sequence:frave:gene13297" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00293t00001; alternateUTRof:Thecc1EG015143t1; inference alignment:Newbler:10:TSA:cgbaB_g00293t00003; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc230t10" CDS complement(26441113..26441721) /locus_tag="TCM_015143" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene13297" /codon_start=1 /product="Sugar isomerase family protein isoform 1" /protein_id="EOY23150.1" /db_xref="TAIR:AT5G52190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTK1" /translation="MDTGNTPMASLASQICDHIASIFSKPTAHPAVLDLMVAELTSIA SQKGRVFLYGVGREGLMLKALCMRLAHLGLSAHSVFDMTTPPITSKDLLIASAGPGGF STVDAICSVARSHGGRVLLLTAQPETGSSVKHANVVAYVPAQTMADDKEDGRGEKSRT LLPMGSVYEGAMFVLFEMVVYKLGEALGESPEAIRGRHTNLE" CDS complement(26441113..26441721) /locus_tag="TCM_015143" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene13297" /codon_start=1 /product="Sugar isomerase family protein isoform 1" /protein_id="EOY23152.1" /db_xref="TAIR:AT5G52190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTK1" /translation="MDTGNTPMASLASQICDHIASIFSKPTAHPAVLDLMVAELTSIA SQKGRVFLYGVGREGLMLKALCMRLAHLGLSAHSVFDMTTPPITSKDLLIASAGPGGF STVDAICSVARSHGGRVLLLTAQPETGSSVKHANVVAYVPAQTMADDKEDGRGEKSRT LLPMGSVYEGAMFVLFEMVVYKLGEALGESPEAIRGRHTNLE" CDS complement(26441113..26441616) /locus_tag="TCM_015143" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene13297" /codon_start=1 /product="Sugar isomerase (SIS) family protein isoform 2" /protein_id="EOY23151.1" /db_xref="TAIR:AT5G52190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTK1" /translation="MVAELTSIASQKGRVFLYGVGREGLMLKALCMRLAHLGLSAHSV FDMTTPPITSKDLLIASAGPGGFSTVDAICSVARSHGGRVLLLTAQPETGSSVKHANV VAYVPAQTMADDKEDGRGEKSRTLLPMGSVYEGAMFVLFEMVVYKLGEALGESPEAIR GRHTNLE" gene complement(26442103..26445856) /locus_tag="TCM_015144" /note="dbxref CacaoGD:Thecc1EG015144" mRNA complement(join(26442103..26442620,26443271..26443444, 26443696..26443808,26444576..26444638,26445688..26445856)) /locus_tag="TCM_015144" /product="Phosphoprotein phosphatase inhibitors" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025231" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016199t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13440.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9171t1" CDS complement(join(26442385..26442620,26443271..26443444, 26443696..26443808,26444576..26444580)) /locus_tag="TCM_015144" /note="paralog of Thecc1EG016199t1" /codon_start=1 /product="Phosphoprotein phosphatase inhibitors" /protein_id="EOY23153.1" /db_xref="Phytozome:POPTR_0015s13440.1" /db_xref="TAIR:AT5G52200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9NLP8" /translation="MNRRVRWDEANLGEIEANKPIRQKITEPKTPYHPMIEDDGSLSP VRRSFNDCIGDAMDAEKLRSALNDVASSSRKTTGRSGGWTSSEDEADPMDQEEDSETD RSGMSFKEHRKAHYDEFLKVKELRRKGSFLDDEDDDVEGDSSSSLSSGVKDIDIEEGT STLPQKSSARPANGV" gene 26445953..26449017 /locus_tag="TCM_015146" /note="dbxref CacaoGD:Thecc1EG015146" mRNA join(26445953..26446128,26446826..26446859, 26446985..26447036,26447152..26447292,26447625..26447733, 26447863..26447924,26448338..26448441,26448633..26449004) /locus_tag="TCM_015146" /product="GTP-binding protein 1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13295" /inference="similar to AA sequence:Phytozome:POPTR_0012s13470.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06935t00001" CDS join(26445987..26446128,26446826..26446859, 26446985..26447036,26447152..26447292,26447625..26447733, 26447863..26447924,26448338..26448441,26448633..26448735) /locus_tag="TCM_015146" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="GTP-binding protein 1 isoform 1" /protein_id="EOY23154.1" /db_xref="Phytozome:POPTR_0012s13470.1" /db_xref="TAIR:AT5G52210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TRC1" /translation="MLRNRGTKKELEENREKISLQNYKRQLLFFTRLNGRSSQNPAIN SIKMLTHFYCQESGLQTEFHVLILGIDKAGKTTLLEKLKSVYSNLEGLPPDRIVPTVG LNIGRIEVSNTKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVIDAACPSRFEDSKSALE KVLRHEDLKGAPLLILANKQDLSEAVSAEELARYLDLKKLDERVYMFEAVSAFDGMGI KEGVEWLVEVMERSKRTETLRIRAGVTGPT" mRNA join(26446014..26446128,26446826..26447036, 26447152..26447292,26447625..26447733,26447863..26447924, 26448338..26448441,26448633..26449017) /locus_tag="TCM_015146" /product="GTP-binding protein 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13295" /inference="similar to AA sequence:Phytozome:POPTR_0012s13470.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b014632t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g06935t00001" mRNA join(26446019..26446128,26446849..26447036, 26447152..26447292,26447625..26447733,26447863..26447924, 26448338..26448441,26448633..26448916) /locus_tag="TCM_015146" /product="GTP-binding protein 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13295" /inference="similar to AA sequence:Phytozome:POPTR_0012s13470.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11442t00001; alternateUTRof:Thecc1EG015146t2; inference alignment:Newbler:10:TSA:cgbaP1_g06935t00001" CDS join(26446944..26447036,26447152..26447292, 26447625..26447733,26447863..26447924,26448338..26448441, 26448633..26448735) /locus_tag="TCM_015146" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="GTP-binding protein 1 isoform 2" /protein_id="EOY23155.1" /db_xref="Phytozome:POPTR_0012s13470.1" /db_xref="TAIR:AT5G52210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TRC1" /translation="MFSLFYGLWKYLFSQTEFHVLILGIDKAGKTTLLEKLKSVYSNL EGLPPDRIVPTVGLNIGRIEVSNTKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVIDAA CPSRFEDSKSALEKVLRHEDLKGAPLLILANKQDLSEAVSAEELARYLDLKKLDERVY MFEAVSAFDGMGIKEGVEWLVEVMERSKRTETLRIRAGVTGPT" CDS join(26446944..26447036,26447152..26447292, 26447625..26447733,26447863..26447924,26448338..26448441, 26448633..26448735) /locus_tag="TCM_015146" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="GTP-binding protein 1 isoform 2" /protein_id="EOY23156.1" /db_xref="Phytozome:POPTR_0012s13470.1" /db_xref="TAIR:AT5G52210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TRC1" /translation="MFSLFYGLWKYLFSQTEFHVLILGIDKAGKTTLLEKLKSVYSNL EGLPPDRIVPTVGLNIGRIEVSNTKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVIDAA CPSRFEDSKSALEKVLRHEDLKGAPLLILANKQDLSEAVSAEELARYLDLKKLDERVY MFEAVSAFDGMGIKEGVEWLVEVMERSKRTETLRIRAGVTGPT" gene complement(26449013..26450917) /locus_tag="TCM_015147" /note="dbxref CacaoGD:Thecc1EG015147" mRNA complement(join(26449013..26449646,26449969..26450075, 26450159..26450363,26450463..26450629,26450733..26450917)) /locus_tag="TCM_015147" /product="Chromosome transmission fidelity 8-like protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013763" /inference="similar to AA sequence:Phytozome:GSVIVT01010548001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9169t2" mRNA complement(join(26449298..26449576,26450159..26450363, 26450463..26450811)) /locus_tag="TCM_015147" /product="Chromosome transmission fidelity protein 8, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m013763" /inference="similar to AA sequence:Phytozome:GSVIVT01010548001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01215t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9169t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc652t5" CDS complement(join(26449509..26449576,26450159..26450363, 26450463..26450612)) /locus_tag="TCM_015147" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Chromosome transmission fidelity protein 8, putative isoform 2" /protein_id="EOY23158.1" /db_xref="Phytozome:GSVIVT01010548001" /db_xref="TAIR:AT5G52220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KEU4" /translation="MQIQVKCSCGAENCPEWAIIELQGVVEVQPSFQDSLQNLTIGQL CRPSSQESYTFTVGYHELTGSKVALKKPMLVLKKIKCMDGDQSDEATSSRVELDVVGV IRHKILFKNRPKALISGPQPIVKEKANAAGAAVQKPSI" CDS complement(join(26449509..26449646,26449969..26450075, 26450159..26450363,26450463..26450612)) /locus_tag="TCM_015147" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Chromosome transmission fidelity 8-like protein isoform 1" /protein_id="EOY23157.1" /db_xref="Phytozome:GSVIVT01010548001" /db_xref="TAIR:AT5G52220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KEU4" /translation="MQIQVKCSCGAENCPEWAIIELQGVVEVQPSFQDSLQNLTIGQL CRPSSQESYTFTVGYHELTGSKVALKKPMLVLKKIKCMDGDQSDEATSSRVELDVVGV IRHKILFKNRPKALISGGNQKPRKIIDNLIKHGLFYTSGFLSTFDGSFFCFAGNSLDR SLTSPPLPSLCLLFFLTGPQPIVKEKANAAGAAVQKPSI" gene complement(26451090..26457027) /locus_tag="TCM_015148" /note="dbxref CacaoGD:Thecc1EG015148" mRNA complement(join(26451090..26452749,26453089..26453269, 26454852..26454947,26455060..>26455185)) /locus_tag="TCM_015148" /product="Methyl-CPG-binding domain protein 13, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13470.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial5; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1539t9; inference alignment:Newbler:10:TSA:cgbaB_g04685t00001" mRNA complement(join(26451098..26452749,26453089..26453269, 26454489..26454635,26454852..26454947,26455060..26455185, 26455281..26455292,26456547..26457027)) /locus_tag="TCM_015148" /product="Methyl-CPG-binding domain protein 13, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13470.1" /inference="similar to AA sequence:ricco:30147.m013762" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04685t00001" mRNA complement(join(26451133..26452749,26453089..26453269, 26454489..26454635,26454852..26454947,26455060..26455185, 26456547..26456947)) /locus_tag="TCM_015148" /product="Methyl-CPG-binding domain protein 13, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13470.1" /inference="similar to AA sequence:ricco:30147.m013762" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6951t2; inference alignment:Newbler:10:TSA:cgbaB_g04685t00001" CDS complement(join(26451518..26452749,26453089..26453269, 26454489..26454635,26454852..26454947,26455060..26455185, 26456547..26456630)) /locus_tag="TCM_015148" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013762" /codon_start=1 /product="Methyl-CPG-binding domain protein 13, putative isoform 2" /protein_id="EOY23160.1" /db_xref="TAIR:AT5G52230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9D4" /translation="MEDQTTDDWLPPGWKVEVRQRRNGKKDKCYYAPCGELRFISRAE VSRYLDKCGCKTEEKENGSGKQSSKNVTVEKAAAEGLPPGWIKEIRITKRAHRVRKDP FYTDPVSGYVFRSMKDALRYVETGELGKLAFKPKDKGSNDEDLEEDNICEPAHVERQK IDVNGITDETERQSAEQVSNLSGITKEEEMLASASTGEQTSLSKHATNQHKAGVGAEL SSLKLSEAKGSEQIGGKDSEEGVHASGNVVGVLLDKQSSENGMIKDETEKTQQGRGKT KLKKAFNIPRRASKRLAGVALDPTPELKTARARRSSFKQLSEVIPDAAESSSPGRCIH GASKQPDQPESALETSCDLDSPKSKELILAPNNMLSSGEMLTMNGHVGNLETEADADN GVLPLGNAAIPGVHSGKVESDVKASEVPGSLVDMPLADLWTDPCIAFAIQTLTGIPCD NPKISELNSSKGPGILATPEVHAERKVNGNGSVERQGCGMDLPLADPAIPKEHAGKVE MGHKTDDKPGSSLDTPLADIWADPCIEFAIKTLTGAIPVEYDLENQDYFRRQPSSSLT QSSNHLTLPDVGIDNFSQTDFICQQYDVTEKAMSKEHAFINPIFNYSHHRSGERP" CDS complement(join(26451518..26452749,26453089..26453269, 26454489..26454635,26454852..26454947,26455060..26455185, 26455281..26455292,26456547..26456630)) /locus_tag="TCM_015148" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013762" /codon_start=1 /product="Methyl-CPG-binding domain protein 13, putative isoform 1" /protein_id="EOY23159.1" /db_xref="TAIR:AT5G52230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9D4" /translation="MEDQTTDDWLPPGWKVEVRQRRNGKKDKLRVMCYYAPCGELRFI SRAEVSRYLDKCGCKTEEKENGSGKQSSKNVTVEKAAAEGLPPGWIKEIRITKRAHRV RKDPFYTDPVSGYVFRSMKDALRYVETGELGKLAFKPKDKGSNDEDLEEDNICEPAHV ERQKIDVNGITDETERQSAEQVSNLSGITKEEEMLASASTGEQTSLSKHATNQHKAGV GAELSSLKLSEAKGSEQIGGKDSEEGVHASGNVVGVLLDKQSSENGMIKDETEKTQQG RGKTKLKKAFNIPRRASKRLAGVALDPTPELKTARARRSSFKQLSEVIPDAAESSSPG RCIHGASKQPDQPESALETSCDLDSPKSKELILAPNNMLSSGEMLTMNGHVGNLETEA DADNGVLPLGNAAIPGVHSGKVESDVKASEVPGSLVDMPLADLWTDPCIAFAIQTLTG IPCDNPKISELNSSKGPGILATPEVHAERKVNGNGSVERQGCGMDLPLADPAIPKEHA GKVEMGHKTDDKPGSSLDTPLADIWADPCIEFAIKTLTGAIPVEYDLENQDYFRRQPS SSLTQSSNHLTLPDVGIDNFSQTDFICQQYDVTEKAMSKEHAFINPIFNYSHHRSGER P" CDS complement(join(26451518..26452749,26453089..26453269, 26454852..26454947,26455060..>26455185)) /locus_tag="TCM_015148" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Methyl-CPG-binding domain protein 13, putative isoform 3" /protein_id="EOY23161.1" /translation="CYYAPCGELRFISRAEVSRYLDKCGCKTEEKENGSGKQSSKNVT VEKAAAEGLPPGWIKEIRITKRAHRVRKDPEPAHVERQKIDVNGITDETERQSAEQVS NLSGITKEEEMLASASTGEQTSLSKHATNQHKAGVGAELSSLKLSEAKGSEQIGGKDS EEGVHASGNVVGVLLDKQSSENGMIKDETEKTQQGRGKTKLKKAFNIPRRASKRLAGV ALDPTPELKTARARRSSFKQLSEVIPDAAESSSPGRCIHGASKQPDQPESALETSCDL DSPKSKELILAPNNMLSSGEMLTMNGHVGNLETEADADNGVLPLGNAAIPGVHSGKVE SDVKASEVPGSLVDMPLADLWTDPCIAFAIQTLTGIPCDNPKISELNSSKGPGILATP EVHAERKVNGNGSVERQGCGMDLPLADPAIPKEHAGKVEMGHKTDDKPGSSLDTPLAD IWADPCIEFAIKTLTGAIPVEYDLENQDYFRRQPSSSLTQSSNHLTLPDVGIDNFSQT DFICQQYDVTEKAMSKEHAFINPIFNYSHHRSGERP" mobile_element 26453958..26454001 /note="source:CACAO_M_S_E144962_F231_scaffold_10 1453 1497" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26457755..26458998) /locus_tag="TCM_015149" /note="dbxref CacaoGD:Thecc1EG015149" mRNA complement(26457755..26458998) /locus_tag="TCM_015149" /product="Clavata3/esr-related 14, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13480.1" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3651t1" CDS complement(26458665..26458928) /locus_tag="TCM_015149" /codon_start=1 /product="Clavata3/esr-related 14, putative" /protein_id="EOY23162.1" /translation="MRTQNSLFLFLTFFIILGLIRVTSCRYISQATSKETDQRLRDKY SPMFYSSFSAIHILGKPAGTKKFSSVHAVSHRLVPDGPNPLHN" gene complement(26460546..>26461256) /locus_tag="TCM_015150" /note="dbxref CacaoGD:Thecc1EG015150" mRNA complement(26460546..>26461256) /locus_tag="TCM_015150" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(26460947..>26461255) /locus_tag="TCM_015150" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23163.1" /translation="NSEGPVFLRPLFQSFQTMRTLSPFLPLLIFAIMLATVHLSSCRQ VTWASYQETQQKLRTKFPFSFPEHFSASSPPVSGNQKYGAIRGVSHQLVPGGPNPLHN " gene complement(26463246..26465594) /locus_tag="TCM_015151" /note="dbxref CacaoGD:Thecc1EG015151" mRNA complement(join(26463246..26463753,26465182..26465594)) /locus_tag="TCM_015151" /product="Steroid binding protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012594t1" /inference="similar to AA sequence:ricco:30147.m013761" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9205t1" CDS complement(join(26463411..26463753,26465182..26465489)) /locus_tag="TCM_015151" /note="dbxref ricco:30147.m013761; paralog of Thecc1EG012594t1" /codon_start=1 /product="Steroid binding protein, putative" /protein_id="EOY23164.1" /db_xref="TAIR:AT3G48890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9D3" /translation="MALQLWETLKEAITAYTGLSPATFFTVLALLWAIYYVVTGLFGS SGDQHLRNRAFEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKGQIYDVSQS RMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKY VKVGTIKKTVPITEEAGSGEGSAATESDAKPAEDGPSDSAVPGTGEKSSGADAKEE" gene complement(26468186..26472432) /locus_tag="TCM_015152" /note="dbxref CacaoGD:Thecc1EG015152" mRNA complement(join(26468186..26468461,26468883..26469420, 26469868..26470273,26472081..26472142,26472213..26472242, 26472347..26472430)) /locus_tag="TCM_015152" /product="RNI-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g29670.1" /inference="similar to AA sequence:ricco:30147.m013759" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6947t1" CDS complement(join(26468390..26468461,26468883..26469420, 26469868..26470226)) /locus_tag="TCM_015152" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013759" /codon_start=1 /product="RNI-like superfamily protein isoform 1" /protein_id="EOY23165.1" /db_xref="TAIR:AT3G48880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2Z5" /translation="MEESDSVAWRWEDLDADVLVKILQSFDIVQLTSGIASVCSSWRM ACCDPMLWKTLDLSVMRSNFIKIPLEPYVYVDARSDKTLTRILKISLSLSRGNIMTLI FHFNLYVSDDQLTYTAERCPRLRRLVMPAWNRIKKTGICKAIRIWRDLESLTMPSIAN PPYLMEEIANNCKNFSELKVMGPFDILFATTIITRLPKIKVLSLRCSMLVKDALISIL DNLQNLEVLNISHCLLIEIPPPPAPRRIMEELDQSILEKASQLRQFITCMKDSCIMCQ RTRNDEGLMRWYKYEEGLWKTDEVIESCLGGFRNDLSTTANVHGKH" mRNA complement(join(26468505..26469420,26469868..26470273, 26472081..26472276)) /locus_tag="TCM_015152" /product="RNI-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g29670.1" /inference="similar to AA sequence:ricco:30147.m013759" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07222t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6947t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3510t4" CDS complement(join(26468862..26469420,26469868..26470226)) /locus_tag="TCM_015152" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m013759" /codon_start=1 /product="RNI-like superfamily protein isoform 3" /protein_id="EOY23167.1" /db_xref="TAIR:AT3G48880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2Z5" /translation="MEESDSVAWRWEDLDADVLVKILQSFDIVQLTSGIASVCSSWRM ACCDPMLWKTLDLSVMRSNFIKIPLEPYVYVDARSDKTLTRILKISLSLSRGNIMTLI FHFNLYVSDDQLTYTAERCPRLRRLVMPAWNRIKKTGICKAIRIWRDLESLTMPSIAN PPYLMEEIANNCKNFSELKVMGPFDILFATTIITRLPKIKVLSLRCSMLVKDALISIL DNLQNLEVLNISHCLLIEIPPPPAPRRIMEELDQSILEKASQLRQFITCMKDSCIMCQ RTRNDEGLMRWYKYEEGLWKTDEVSSLSL" mRNA complement(join(<26469050..26469420,26469868..26470273, 26470400..26470492,26472083..26472242,26472347..26472432)) /locus_tag="TCM_015152" /product="RNI-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g29670.1" /inference="similar to AA sequence:ricco:30147.m013759" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3510t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3510t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6947t1" CDS complement(join(<26469051..26469420,26469868..26470226)) /locus_tag="TCM_015152" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013759" /codon_start=1 /product="RNI-like superfamily protein isoform 2" /protein_id="EOY23166.1" /db_xref="TAIR:AT3G48880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2Z5" /translation="MEESDSVAWRWEDLDADVLVKILQSFDIVQLTSGIASVCSSWRM ACCDPMLWKTLDLSVMRSNFIKIPLEPYVYVDARSDKTLTRILKISLSLSRGNIMTLI FHFNLYVSDDQLTYTAERCPRLRRLVMPAWNRIKKTGICKAIRIWRDLESLTMPSIAN PPYLMEEIANNCKNFSELKVMGPFDILFATTIITRLPKIKVLSLRCSMLVKDALISIL DNLQNLEVLNISHCLLIEIPPPPAP" gene 26473014..26480836 /locus_tag="TCM_015153" /note="dbxref CacaoGD:Thecc1EG015153" mRNA join(26473014..26473291,26475642..26475889, 26476222..26476295,26476404..26476531,26476621..26476672, 26476758..26476830,26476925..26476998,26477079..26477138, 26477225..26477390,26477822..26477921,26478697..26478779, 26478920..26479020,26479511..26479641,26480072..26480836) /locus_tag="TCM_015153" /product="Single-stranded DNA endonuclease family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025176" /inference="similar to AA sequence:Phytozome:GSVIVT01010540001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1169t6_C2" mobile_element complement(26473407..26473486) /note="source:scaffold_5_CACTA_0608 4849 4927" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26473417..26474237 /note="source:scaffold_8_CACTA_0855 1947 3574" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26474255..26474328) /note="source:CACAO_M_S_E14444_F98_scaffold_2 2030 2098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26474257..26474339 /note="source:CACAO_M_E43428_F369_scaffold_5 1253 1333" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(26475664..26475889,26476222..26476295, 26476404..26476531,26476621..26476672,26476758..26476830, 26476925..26476998,26477079..26477138,26477225..26477390, 26477822..26477921,26478697..26478779,26478920..26479020, 26479511..26479641,26480072..26480573) /locus_tag="TCM_015153" /codon_start=1 /product="Single-stranded DNA endonuclease family protein" /protein_id="EOY23168.1" /db_xref="Phytozome:GSVIVT01010540001" /db_xref="TAIR:AT3G48900.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9D0" /translation="MGVKNLWDILESCKKTLPLHYLQNKRVCVDLSCWMVQLQNVNKS HCPMNDKLYLKGLFHRLRALIALNCSLIFVTDGSIPAIKLATYRRRLNSGSEVENLAT QEGKNSQKLSSLRRNMGSEFSCMIKEAKVLGLALGITCLDGIEEAEAQCALLNIESLC DGCFSSDSDIFLFGARTVYRDICLGEGGHVVCYEMADIEQKLGFGRNSLISLALLLGS DYSQGVHGLGPGSACQLVKSVGDHDILQKVASEGLSFARNTKSSRKQGQDKCNDKTTT LHHEVSMNGSNHNLQRDNQYLQVVEAYMKPKCHSADSDVVNRVLVQHPFQRELLQQLC AQYFEWPPEKTDEYILPKIAERDLRRFAKLRSASSQLGVNIPLKEIPVKCPVSVIIKH RKVHGEECFEVSWEELDGIKTSVISADLIKSACPEKITEFVDRRALEKKHHRKSRPKK SEQKCSVAEIDLKLQDLLLDIELGSKSIPIASREVISGKMTMATEGNFVNLDPEVILE SEGNADCKAVTLCPQTGMTAPKHEVIDLSSPSPQVQSQNVPRCTDVSVIDLSDSESER SPEHVKKARELRLFLASIRDDIH" gene complement(26480790..26489439) /locus_tag="TCM_015154" /note="dbxref CacaoGD:Thecc1EG015154" mRNA complement(join(26480790..26481127,26481321..26481637, 26481777..26482247,26482507..26482656,26483454..26483525, 26483608..26483868,26484004..26484135,26484242..26484505, 26484892..26485143,26485236..26485334,26485872..26486036, 26486345..26486530,26487122..26488389)) /locus_tag="TCM_015154" /product="DNA mismatch repair protein MSH3 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G25540.1" /inference="similar to AA sequence:ricco:30147.m013756" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc62t11" CDS complement(join(26481124..26481127,26481321..26481637, 26481777..26482247,26482507..26482656,26483454..26483525, 26483608..26483868,26484004..26484135,26484242..26484505, 26484892..26485143,26485236..26485334,26485872..26486036, 26486345..26486530,26487122..26488096)) /locus_tag="TCM_015154" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013756" /codon_start=1 /product="DNA mismatch repair protein MSH3 isoform 1" /protein_id="EOY23169.1" /db_xref="TAIR:AT4G25540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID71" /translation="MGKQKQQVISRFFAPKPKTPSTPTPPANPSSSPSPPSPPIPSPN VKATVSFSPSKRKLLSTHLTSTPKKPKTTLSPHTHNPVPLQSNPSLHQKFLHKLLEPS PRRPLEPTVELSGSDHKKYTPLEQQVVDLKNKYPDVLLMVEVGYRFRFFGKDAEIAAK VLGIYAHVDRNFLTASVPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNRVGPF CRGLSALYTKATLEAAEDVGGKEEGCGGESNYLVCVVEKGLEFSGSVSGSGAVDVRVG IVGVEISTGDVVYGEFDDGVMRSGLEAVVFSLAPAELLVGEPLSKQTEKLLLAYAGPA SNVRLEHASCDCFKGGGALAEVMSVYEKMVEDNLASNVNQSLEATEYSHSSIQGVMNM PDLALQALALTIRHLKQFGFERIVCLEASFRSLSSSLEMNLSANTLQQLEILRNNSDG SESGSLLQIMNHTLTIYGSRLLRHWVTHPLCDRTMISARLDAVSEIALSMGCYKVSQS IIEIDGEDSDVTIAQPEFYSVLSSVLTFLGRSPDIQRGITRIFHRTATPAEFIAVIKA ILSAGKQLQRLHIDEEHEDNCSKKVRVGIVQSALLKRLILTASSSNVLGNAAKLLSFL NKEAADKGDLTNLIIISNNQFPEVARARKAVQLAKEKLDNLIFLYRKRLGKGNLEFMC VSGTTHLIELPIDANVPSNWVKVNSTKKTIRYHPPEVLTALDQLTLANEELTIICRAA WDSFLREFGEYYSEFQAAVQALAALDCLHSLATLSRNKNYVRPIFVDDNEPVQIQIHS GRHPVLETILQEGFVPNDTTLHADRECCQIVTGPNMGGKSCYIRQVALIAMMAQVGSF VPAASATLHVLDAIYTRMGASDSIQQGRSTFLEELSEASQILHNCTARSLVVIDELGR GTSTHDGVSIAYATLHHLLEQRKCMVLFVTHYPRIADIKVEFPGSVEVYHVSYLTAHN DEVTMDAKSDHEVTYLYKLVPGVSARSFGFKVAQLAQLPSSCISQAIIMATRLEAIES SRVRKKSEERQPETSSSDQELETQENILKSIGSFSSERLENLEEFASAFSDLLLNLKS ARTDDDLGKSFQLLKEARSIAKELINR" mRNA complement(join(<26482220..26482247,26482507..26482656, 26483454..26483525,26483608..26483868,26484004..26484135, 26484242..26484505,26484892..26485143,26485236..26485334, 26485872..26486036,26486345..26486530,26487122..26488783, 26489404..26489439)) /locus_tag="TCM_015154" /product="DNA mismatch repair protein MSH3 isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT4G25540.1" /inference="similar to AA sequence:ricco:30147.m013756" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc65t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc62t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7060t1" CDS complement(join(<26482221..26482247,26482507..26482656, 26483454..26483525,26483608..26483868,26484004..26484135, 26484242..26484505,26484892..26485143,26485236..26485334, 26485872..26486036,26486345..26486530,26487122..26488096)) /locus_tag="TCM_015154" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013756" /codon_start=1 /product="DNA mismatch repair protein MSH3 isoform 2" /protein_id="EOY23170.1" /db_xref="TAIR:AT4G25540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID71" /translation="MGKQKQQVISRFFAPKPKTPSTPTPPANPSSSPSPPSPPIPSPN VKATVSFSPSKRKLLSTHLTSTPKKPKTTLSPHTHNPVPLQSNPSLHQKFLHKLLEPS PRRPLEPTVELSGSDHKKYTPLEQQVVDLKNKYPDVLLMVEVGYRFRFFGKDAEIAAK VLGIYAHVDRNFLTASVPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNRVGPF CRGLSALYTKATLEAAEDVGGKEEGCGGESNYLVCVVEKGLEFSGSVSGSGAVDVRVG IVGVEISTGDVVYGEFDDGVMRSGLEAVVFSLAPAELLVGEPLSKQTEKLLLAYAGPA SNVRLEHASCDCFKGGGALAEVMSVYEKMVEDNLASNVNQSLEATEYSHSSIQGVMNM PDLALQALALTIRHLKQFGFERIVCLEASFRSLSSSLEMNLSANTLQQLEILRNNSDG SESGSLLQIMNHTLTIYGSRLLRHWVTHPLCDRTMISARLDAVSEIALSMGCYKVSQS IIEIDGEDSDVTIAQPEFYSVLSSVLTFLGRSPDIQRGITRIFHRTATPAEFIAVIKA ILSAGKQLQRLHIDEEHEDNCSKKVRVGIVQSALLKRLILTASSSNVLGNAAKLLSFL NKEAADKGDLTNLIIISNNQFPEVARARKAVQLAKEKLDNLIFLYRKRLGKGNLEFMC VSGTTHLIELPIDANVPSNWVKVNSTKKTIRYHPPEVLTALDQLTLANEELTIICRAA WDSFLREFGEYYSEFQAAVQALAALDCLHSLATLSRNKNYVRPIFVDDNEPVQIQIHS GRHPVLETILQEGFVPNDTTLHADRECCQIVTGPNMGGKSCYIRQVALIAMMAQVGSF VPAAS" gene 26488592..26491836 /locus_tag="TCM_015155" /note="dbxref CacaoGD:Thecc1EG015155" mRNA join(26488592..26488783,26489410..26489455, 26490523..26490616,26490747..26490820,26490950..26491036, 26491129..26491239,26491602..26491836) /locus_tag="TCM_015155" /product="Cleavage/polyadenylation specificity factor, 25kDa subunit" /inference="alignment:exonerate- protein:2:ricco:30147.m013755" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037594t1" /inference="similar to AA sequence:ricco:30147.m013755" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9188t1" CDS join(26488665..26488783,26489410..26489455, 26490523..26490616,26490747..26490820,26490950..26491036, 26491129..26491239,26491602..26491673) /locus_tag="TCM_015155" /note="dbxref ricco:30147.m013755; paralog of Thecc1EG037594t1" /codon_start=1 /product="Cleavage/polyadenylation specificity factor, 25kDa subunit" /protein_id="EOY23171.1" /db_xref="TAIR:AT4G25550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65606" /translation="MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKE GMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGAN SPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPK NLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT" gene complement(26491878..26494386) /locus_tag="TCM_015156" /note="dbxref CacaoGD:Thecc1EG015156" mRNA complement(26491878..26494386) /locus_tag="TCM_015156" /product="Tetratricopeptide repeat superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene13283" /inference="similar to AA sequence:frave:gene13283" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7093t3" CDS complement(26492695..26494335) /locus_tag="TCM_015156" /note="dbxref frave:gene13283" /codon_start=1 /product="Tetratricopeptide repeat superfamily protein, putative" /protein_id="EOY23172.1" /db_xref="TAIR:AT3G29230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6Q2" /translation="MADISNLLPHCTFNQLKQIHALIITTALCQNFHIFSTFLRRSTE FGSMVYSDLIFSKMGTPFYSRIMPWNIMVRGYAFNGPLEDCMSVFDELPQRGLRPDNY TYPYVLNSCSQLGLFRKSQNVHCQILKSGFESSFEVSNSLFNMYLKMQASLEVKKGER RDARKVFDDMSVKPVQVWNQMIYQCVCNGNVSSAIDLFVSMPVKDVISWNIMILGYTR VGELSKARHLFERIPEKNVVSWTSMIGAYADAGDLDTARKIFEKMPCRNVVSWNSMIS SYTKHERFQEALDLFEQMQIEGVVSDEYTFVSVLSACSHLGALEIGKWIHFLIQDWPR LGVIVRTALIDMYAKCGDISRAFTLFIKIKKSDVFCWNVMIKSLAIHGRTEDAIRIFF LMQKDGLKPNDFTFTSVLFACSHGGLVEEGRKIFYSMERDFGVSPKLEHFGCFVDLHS RNGQLEEAQLLVKDMPYKPDIAIWGALLGGCRVRSDLKLAEKVVERATELESKESGVH VLSSNIHASVGQWPQALNARQKMEERKILKKVGGSTIV" mobile_element 26494876..26495056 /note="source:CACAO_PIF_E119_scaffold_3 4474 4669" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(26495639..26495764) /note="source:CACAO_Mutator_E714_scaffold_3 753 860" /mobile_element_type="transposon:TIR/Mutator" gene 26501841..26504502 /locus_tag="TCM_015157" /note="dbxref CacaoGD:Thecc1EG015157" mRNA join(26501841..26502088,26502815..26502944, 26503509..26504502) /locus_tag="TCM_015157" /product="Myb domain protein 18, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m013750" /inference="similar to AA sequence:Phytozome:POPTR_0015s13190.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3642t1" CDS join(26501953..26502088,26502815..26502944, 26503509..26504130) /locus_tag="TCM_015157" /codon_start=1 /product="Myb domain protein 18, putative" /protein_id="EOY23173.1" /db_xref="Phytozome:POPTR_0015s13190.1" /db_xref="TAIR:AT4G25560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ID76" /translation="MGCKPSDKPKAKHRKGLWSPEEDLKLRNYVLKHGHGCWSSVPIN AGLQRNGKSCRLRWINYLRPGLKRGMFTPQEEETILTLHHMLGNKWSQIAQHLPGRTD NEIKNYWHSYLKKKVAKVEESEAKTRTHNTTSSSENTESTLSPQTVIGQMPSYDSLQH IEKSSIDIDQAFPQHFDFPREPQRSFLPKLLFAEWLSLDQEGGSFANSGKPVTSSDGF NQGSSSNFQDPFINGYSLNEGVFGSDLHDGLSNSSINEIFGSQFKFEAQISGNEFVGS VSGEDICSDFNINNDVMYI" mobile_element 26502569..26504095 /note="source:scaffold_3_CACTA_0395 1 1527" /mobile_element_type="transposon:TIR/CACTA" gene complement(26504892..26506717) /locus_tag="TCM_015158" /note="dbxref CacaoGD:Thecc1EG015158" mRNA complement(join(26504892..26505322,26505448..26505512, 26505596..26505739,26505977..26506137,26506482..26506717)) /locus_tag="TCM_015158" /product="SNARE superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s13250.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s13250.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6955t2" CDS complement(join(26505215..26505322,26505448..26505512, 26505596..26505739,26505977..26506137,26506482..26506672)) /locus_tag="TCM_015158" /codon_start=1 /product="SNARE superfamily protein" /protein_id="EOY23174.1" /db_xref="Phytozome:POPTR_0012s13250.1" /db_xref="TAIR:AT5G52270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I498" /translation="MVKLTIVGRVNDGLPLAQGARYVNTENDNFSYYKQQGEFIIKEI SRGALPPSKMTIRVDHHSFNYLVVNGICFITLCDSSYPRKLAFHYLQDLQKEFDKFDH SLIGKITRPYSFIRFDGIIANVRKQYIDTRTQANLSKLNANRRQELDIITENVSDIIE RRRNSGIFETPATPRTSSQVWGSPRLEAITLIWTPIAIIAVVASVLLWVSLILTDDFL TSTL" gene 26508511..26511245 /locus_tag="TCM_015159" /note="dbxref CacaoGD:Thecc1EG015159" mRNA join(26508511..26508610,26508763..26508864, 26508980..26509123,26509792..26509921,26510591..26511245) /locus_tag="TCM_015159" /product="Myb domain protein 17, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m013749" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005371t1" /inference="similar to AA sequence:ricco:30174.m009001" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2730t1" CDS join(26508991..26509123,26509792..26509921, 26510591..26511080) /locus_tag="TCM_015159" /note="dbxref ricco:30174.m009001; paralog of Thecc1EG005371t1" /codon_start=1 /product="Myb domain protein 17, putative" /protein_id="EOY23175.1" /db_xref="TAIR:AT3G61250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2D9" /translation="MGRTPSCDKEGMKKGAWTPEEDKLLVHYIKKHGHDCWRTLPMLA GLRRCGKSCRLRWTNYLRPDIKRGPFSSEEEACIIRLHGMLGNRWAAIASHLPGRTDN EIKNFWNTHLKKRLLSTGNILQTSLSPSDCEPSTLKSELPSTRHTVQCESFRLEGEAR LSIESSMLRSSSTSKTDCDIFLKLWNSDVGEKFRNIAKLPKKEEASETPMSQTSSWTK LESSSCITCEERSSISCGSDTTPEQTDCYRPG" mobile_element complement(26512288..26512372) /note="source:scaffold_1_CACTA_0005 6268 6355" /mobile_element_type="transposon:TIR/CACTA" gene complement(26512405..26520988) /locus_tag="TCM_015160" /note="dbxref CacaoGD:Thecc1EG015160" mRNA complement(join(26512405..26513011,26513104..26513185, 26513416..26513503,26513613..26513663,26513833..26514016, 26514148..26514392,26519821..26520004,26520131..26520212, 26520315..26520396,26520710..26520988)) /locus_tag="TCM_015160" /product="Remorin family protein" /inference="alignment:exonerate- protein:2:ricco:30147.m013748.2" /inference="similar to AA sequence:ricco:30147.m013748" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03470t00001" CDS complement(join(26512817..26513011,26513104..26513185, 26513416..26513503,26513613..26513663,26513833..26514016, 26514148..26514392,26519821..26520004,26520131..26520212, 26520315..26520396,26520710..26520743)) /locus_tag="TCM_015160" /note="dbxref ricco:30147.m013748" /codon_start=1 /product="Remorin family protein" /protein_id="EOY23176.1" /db_xref="TAIR:AT5G23750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P93788" /translation="MESSKGSTMDKELQRINTQQLESKINAWREREKAKVDHKADRKM AETQSWQEEMKACNEAKSKMIEVSAEKLKKLKIEQLKNKEAQVQKTVAEKKASIEAQR EKGKIAIDDKAEKYRATNTLPKTCFVKNPTTKYVILISLFLAKILTFQSNEQRKPETY EFFFLSAYIFLANFGCLEKISESLSHSQPTHNRPLVPTIQLSSVIGEATQKHMAEEEP KKVETETPSEPPPPTPEPAEAPQDVAEEKTVIPPPPTEEKPAESKEVAAAVEKAAEST EEKSTEGSVNRDAVLARVETQKRVSLIKAWEESEKSKAENKAYKKLSSIAAWENSRKA ALEAELKKIEEKLEKQKAEYVEKMKNKVALIHKEAEEKKAIVEAKRGEDLLKAEETAA KFRAKGTTPKKVLGCF" gene complement(26521307..26529610) /locus_tag="TCM_015161" /note="dbxref CacaoGD:Thecc1EG015161" mRNA complement(join(26521307..26521729,26522080..26522279, 26522385..26522433,26524169..26524212,26529236..26529394, 26529480..26529610)) /locus_tag="TCM_015161" /product="Cytochrome b561/ferric reductase transmembrane protein family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025266" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015162t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s13210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00319t00002; inference alignment:Newbler:10:TSA:cgbaL_g00319t00002" mRNA complement(join(26521307..26521729,26522080..26522279, 26526429..26526796)) /locus_tag="TCM_015161" /product="Cytochrome b561/ferric reductase transmembrane protein family isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025266" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015162t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13160.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00319t00005; inference alignment:Newbler:10:TSA:cgbaB_g02877t00001; inference alignment:Newbler:10:TSA:cgbaL_g00319t00002" mRNA complement(join(26521318..26521729,26522080..26522279, 26522385..26522433,26524169..26524353,26524430..26524482)) /locus_tag="TCM_015161" /product="Cytochrome b561/ferric reductase transmembrane protein family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025266" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015162t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s13210.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02877t00001; inference alignment:Newbler:10:TSA:cgbaB_g02877t00001; inference alignment:Newbler:10:TSA:cgbaL_g00319t00002" CDS complement(join(26521430..26521729,26522080..26522279, 26522385..26522433,26524169..26524212,26529236..26529329)) /locus_tag="TCM_015161" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015162t2" /codon_start=1 /product="Cytochrome b561/ferric reductase transmembrane protein family isoform 1" /protein_id="EOY23177.1" /db_xref="Phytozome:POPTR_0012s13210.1" /db_xref="TAIR:AT4G25570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L856" /translation="MAITALYLTIVPHALAVAAAVMVLVWCIHFRGGLAWASSNKNLI FNLHPVLMLIGFIILGGEAIMSYKSLPLSKDVKKLIHLVLHGIALILGIIGIYTAFKY HNESSIVNLYSLHSWLGMGIIVLYGIQWIYGFLVFFYPGGSAGLRSESLPWHVLLGLF VYILAIGNASIGFLEKLTFLENSGLAKYGAEAYLVNFTAVVTILYGAFVIFTVFAKAP SEDDNSYSAI" CDS complement(join(26521430..26521729,26522080..26522279, 26526429..26526507)) /locus_tag="TCM_015161" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015162t1" /codon_start=1 /product="Cytochrome b561/ferric reductase transmembrane protein family isoform 3" /protein_id="EOY23179.1" /db_xref="Phytozome:POPTR_0015s13160.1" /db_xref="TAIR:AT4G25570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L856" /translation="MCLTILLFLQLHPVLMLIGFIILGGEAIMSYKSLPLSKDVKKLI HLVLHGIALILGIIGIYTAFKYHNESSIVNLYSLHSWLGMGIIVLYGIQWIYGFLVFF YPGGSAGLRSESLPWHVLLGLFVYILAIGNASIGFLEKLTFLENSGLAKYGAEAYLVN FTAVVTILYGAFVIFTVFAKAPSEDDNSYSAI" CDS complement(join(26521430..26521729,26522080..26522279, 26522385..26522433,26524169..26524306)) /locus_tag="TCM_015161" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015162t2" /codon_start=1 /product="Cytochrome b561/ferric reductase transmembrane protein family isoform 2" /protein_id="EOY23178.1" /db_xref="Phytozome:POPTR_0012s13210.1" /db_xref="TAIR:AT4G25570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L856" /translation="MAIRALHLTIVPHALAVAAAVMVLVWCIYFRGGLAWASSNKNLI FNLHPVLMLIGFIILGGEAIMSYKSLPLSKDVKKLIHLVLHGIALILGIIGIYTAFKY HNESSIVNLYSLHSWLGMGIIVLYGIQWIYGFLVFFYPGGSAGLRSESLPWHVLLGLF VYILAIGNASIGFLEKLTFLENSGLAKYGAEAYLVNFTAVVTILYGAFVIFTVFAKAP SEDDNSYSAI" gene complement(26525396..26529385) /locus_tag="TCM_015162" /note="dbxref CacaoGD:Thecc1EG015162" mRNA complement(join(26525396..26525781,26526124..26526323, 26526429..26526477,26529192..26529385)) /locus_tag="TCM_015162" /product="Cytochrome b561/ferric reductase transmembrane protein family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g05890.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015161t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s13210.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00319t00003; inference alignment:Newbler:10:TSA:cgbaL_g00319t00006; inference alignment:Newbler:10:TSA:cgbaL_g00319t00002" mRNA complement(join(26525396..26525781,26526124..26526323, 26526429..26526796)) /locus_tag="TCM_015162" /product="Cytochrome b561/ferric reductase transmembrane protein family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g05890.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015161t3" /inference="similar to AA sequence:Phytozome:POPTR_0015s13160.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00319t00006; inference alignment:Newbler:10:TSA:cgbaL_g00319t00006" CDS complement(join(26525491..26525781,26526124..26526323, 26526429..26526477,26529192..26529329)) /locus_tag="TCM_015162" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015161t1" /codon_start=1 /product="Cytochrome b561/ferric reductase transmembrane protein family isoform 2" /protein_id="EOY23181.1" /db_xref="Phytozome:POPTR_0012s13210.1" /db_xref="TAIR:AT4G25570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L856" /translation="MAITALYLTIVPHALAVAAAVMVLVWCIHFRGGLAWDSSNKNHI FNLHPVLMLIGFIILGGEAIMSYKSLPLSKDVKKLMHLVLHAIALILGIIGIYTAFKY HNESSIVNLYSLHSWLGMGIIVLYGIQWIYGFLVFFYPEGSAGLRSESLPWHVLLGLF VYILAVGNASLGFLEKLTFLENSGLARHGAEAYLVNFTAVVTILYGAFVIFTVLNQNF YRVRSWN" CDS complement(join(26525491..26525781,26526124..26526323, 26526429..26526507)) /locus_tag="TCM_015162" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015161t3" /codon_start=1 /product="Cytochrome b561/ferric reductase transmembrane protein family isoform 1" /protein_id="EOY23180.1" /db_xref="Phytozome:POPTR_0015s13160.1" /db_xref="TAIR:AT4G25570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L856" /translation="MCLTILLFLQLHPVLMLIGFIILGGEAIMSYKSLPLSKDVKKLM HLVLHAIALILGIIGIYTAFKYHNESSIVNLYSLHSWLGMGIIVLYGIQWIYGFLVFF YPEGSAGLRSESLPWHVLLGLFVYILAVGNASLGFLEKLTFLENSGLARHGAEAYLVN FTAVVTILYGAFVIFTVLNQNFYRVRSWN" mobile_element 26528143..26529123 /note="source:MITE_hAT_12 2 1084" /mobile_element_type="transposon:TIR/MITE" mobile_element 26530526..26530684 /note="source:CACAO_PIF_E31_scaffold_2 4060 4214" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(26530541..26531137) /note="source:CACAO_MITE_S202_scaffold_8 1 598" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(26531316..26531891) /note="source:CACAO_M_E4753_F17_scaffold_2 7194 7815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26531379..26532364 /note="source:scaffold_2_CACTA_0244 12398 13337" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26532365..26532568) /note="source:INTACT135F_F90_scaffold_2-int 12888 13968" /mobile_element_type="retrotransposon:LTR/Copia" gene 26535313..26541217 /locus_tag="TCM_015163" /note="dbxref CacaoGD:Thecc1EG015163" mRNA join(26535313..26535904,26535995..26536195, 26536283..26536405,26536562..26536599,26536719..26536821, 26536955..26539174,26539436..26539588,26540007..26540146, 26540282..26541217) /locus_tag="TCM_015163" /product="Myosin heavy chain-related protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016224t1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10207t00001" CDS join(26535833..26535904,26535995..26536195, 26536283..26536405,26536562..26536599,26536719..26536821, 26536955..26539174,26539436..26539588,26540007..26540146, 26540282..26540528) /locus_tag="TCM_015163" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016224t1" /codon_start=1 /product="Myosin heavy chain-related protein, putative isoform 1" /protein_id="EOY23182.1" /translation="MFKSWRSDKKKIKVVFKLQFQATQVPRLKKSAVTIALVPEDVGK PTLRLEKVAVQDGSCLWENPVFETVKLIRETKTGKLSEKIYHFVVSTGSSKAGFLGEA SIDFADFAAETEPITVSLPLKFANSGAILHVTIHKIEGDADQRYLGETEGFAISRDGS LQSQDNNYSVHENDQNFTEDGHLNMITYQNAEQNGSIKASNGSTATVASYWDIGSEQP RRASIGQDPASFLSPLRLNSMPQRGADAVTTKKQTHRRTNTDWSVCSTSDGSLVESGN SPIDIPREWQEGSDSSVEKLRSENALLLRQVEVSELELQSLRKQILKETKRTQDLSGQ IISLKEERDAVKTELKQLKSQKNTDEVEIESRLQAENEESNVLLEEIRQELNHEKDLN TNLRLQLQRTEDSNSNLILAVRDLNEMLEQKNREISCLSSEIEASMNIKEVQSNSKCH MNEAEDQKTVEELNKEQNDANEVHMMKHTVTDLNAELEFYRKHKVELEMHIEELSQEN EVLKQENYDISSQLKQNQQQESIKVQNEYSESLATVNELESQVQRLEDKIKQQSEEYS ESLVAINELESQVKELKKELENRTQRFEDDLNAMIHSKTEQEQSTIRAEEALRKTRWK NAVTAERLQEEFKRLSIEMATKFDENEKMALKAVAEANELHIQKGNLEEMLQKANEEL ELLKDRTGIERQELSHQLDIKAKQIEQMSMELNEKTMRLEHTQKQEKEKQEAFSKEIQ MLRTEIKKLTEQRSQFSDQAKENGKQSDETKKVKTSSDKTEMLIQRWNKERDELEKKI ASAKKEAEKAQKQLISTRSLKDKKEKMITNLKSEMENIQVEYNDLKHSLIREEMEKEK LRKQVSQLKNDLQKKEEEASSLEKELKNNGGQAAVTPRSSNSTSAPQGSKSITMLQKK LRLLKDQINLKEAASKTSANSAPEKERNLSNMIEELESSMEQLKICHCFSADHCQEET ISAGIFTTNVTKSEERGKSPDNILHSKMNTAEGMSFSIRAVPVERRKETKAEKELKCS ASGTSTGANLAELLCEVECLKERNKSMERELKDMEERYSEISLKFAEVEGERQQLVMT VRNLKNSKKN" mRNA join(26536207..26536405,26536562..26536599, 26536719..26539174,26539436..26539588,26540007..26540146, 26540282..26540827) /locus_tag="TCM_015163" /product="Myosin heavy chain-related protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016224t1" /inference="similar to AA sequence:ricco:30190.m011187" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc952t4; inference alignment:Newbler:10:TSA:cgbaL_g10207t00001" mRNA join(26536380..26536405,26536562..26536599, 26536719..26539174,26539436..26539588,26540007..26540164, 26540282..26540906) /locus_tag="TCM_015163" /product="Myosin heavy chain-related protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13140.1" /inference="similar to AA sequence:ricco:30190.m011187" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc956t2; inference alignment:Newbler:10:TSA:cgbaL_g10207t00001" mRNA join(26536380..26536405,26536562..26536599, 26536719..26539174,26539442..26539588,26540007..26540146, 26540282..26540906) /locus_tag="TCM_015163" /product="Myosin heavy chain-related protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13140.1" /inference="similar to AA sequence:ricco:30190.m011187" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc956t1; inference alignment:Newbler:10:TSA:cgbaL_g10207t00001" mRNA join(<26536380..26536405,26536562..26536599, 26536719..26536821,26536955..26539174,26539436..>26539568) /locus_tag="TCM_015163" /product="Myosin heavy chain-related protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016224t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13140.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc944t3; inference alignment:Newbler:10:TSA:cgbaL_g10207t00001" mRNA join(<26536380..26536405,26536562..26536599, 26536719..26536821,26536955..26539174,26539442..>26539568) /locus_tag="TCM_015163" /product="Myosin heavy chain-related protein, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016224t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13140.1" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc944t1; inference alignment:Newbler:10:TSA:cgbaL_g10207t00001" CDS join(<26536382..26536405,26536562..26536599, 26536719..26536821,26536955..26539174,26539436..>26539567) /locus_tag="TCM_015163" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG016224t1" /codon_start=1 /product="Myosin heavy chain-related protein, putative isoform 5" /protein_id="EOY23186.1" /db_xref="Phytozome:POPTR_0015s13140.1" /db_xref="TAIR:AT5G52280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUE1" /translation="ANSGAILHVTIHKIEGDADQRYLGETEGFAISRDGSLQSQDNNY SVHENDQNFTEDGHLNMITYQNAEQNGSIKASNGSTATVASYWDIGSEQPRRASIGQD PASFLSPLRLNSMPQRGADAVTTKKQTHRRTNTDWSVCSTSDGSLVESGNSPIDIPRE WQEGSDSSVEKLRSENALLLRQVEVSELELQSLRKQILKETKRTQDLSGQIISLKEER DAVKTELKQLKSQKNTDEVEIESRLQAENEESNVLLEEIRQELNHEKDLNTNLRLQLQ RTEDSNSNLILAVRDLNEMLEQKNREISCLSSEIEASMNIKEVQSNSKCHMNEAEDQK TVEELNKEQNDANEVHMMKHTVTDLNAELEFYRKHKVELEMHIEELSQENEVLKQENY DISSQLKQNQQQESIKVQNEYSESLATVNELESQVQRLEDKIKQQSEEYSESLVAINE LESQVKELKKELENRTQRFEDDLNAMIHSKTEQEQSTIRAEEALRKTRWKNAVTAERL QEEFKRLSIEMATKFDENEKMALKAVAEANELHIQKGNLEEMLQKANEELELLKDRTG IERQELSHQLDIKAKQIEQMSMELNEKTMRLEHTQKQEKEKQEAFSKEIQMLRTEIKK LTEQRSQFSDQAKENGKQSDETKKVKTSSDKTEMLIQRWNKERDELEKKIASAKKEAE KAQKQLISTRSLKDKKEKMITNLKSEMENIQVEYNDLKHSLIREEMEKEKLRKQVSQL KNDLQKKEEEASSLEKELKNNGGQAAVTPRSSNSTSAPQGSKSITMLQKKLRLLKDQI NLKEAASKTSANSAPEKERNLSNMIEELESSMEQLKICHCF" CDS join(<26536382..26536405,26536562..26536599, 26536719..26536821,26536955..26539174,26539442..>26539567) /locus_tag="TCM_015163" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG016224t1" /codon_start=1 /product="Myosin heavy chain-related protein, putative isoform 6" /protein_id="EOY23187.1" /db_xref="Phytozome:POPTR_0015s13140.1" /db_xref="TAIR:AT5G52280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUE1" /translation="ANSGAILHVTIHKIEGDADQRYLGETEGFAISRDGSLQSQDNNY SVHENDQNFTEDGHLNMITYQNAEQNGSIKASNGSTATVASYWDIGSEQPRRASIGQD PASFLSPLRLNSMPQRGADAVTTKKQTHRRTNTDWSVCSTSDGSLVESGNSPIDIPRE WQEGSDSSVEKLRSENALLLRQVEVSELELQSLRKQILKETKRTQDLSGQIISLKEER DAVKTELKQLKSQKNTDEVEIESRLQAENEESNVLLEEIRQELNHEKDLNTNLRLQLQ RTEDSNSNLILAVRDLNEMLEQKNREISCLSSEIEASMNIKEVQSNSKCHMNEAEDQK TVEELNKEQNDANEVHMMKHTVTDLNAELEFYRKHKVELEMHIEELSQENEVLKQENY DISSQLKQNQQQESIKVQNEYSESLATVNELESQVQRLEDKIKQQSEEYSESLVAINE LESQVKELKKELENRTQRFEDDLNAMIHSKTEQEQSTIRAEEALRKTRWKNAVTAERL QEEFKRLSIEMATKFDENEKMALKAVAEANELHIQKGNLEEMLQKANEELELLKDRTG IERQELSHQLDIKAKQIEQMSMELNEKTMRLEHTQKQEKEKQEAFSKEIQMLRTEIKK LTEQRSQFSDQAKENGKQSDETKKVKTSSDKTEMLIQRWNKERDELEKKIASAKKEAE KAQKQLISTRSLKDKKEKMITNLKSEMENIQVEYNDLKHSLIREEMEKEKLRKQVSQL KNDLQKKEEEASSLEKELKNNGGQAAVTPRSSNSTSAPQGSKSITMLQKKLRLLKINL KEAASKTSANSAPEKERNLSNMIEELESSMEQLKICHCF" CDS join(26536970..26539174,26539436..26539588, 26540007..26540164,26540282..26540528) /locus_tag="TCM_015163" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m011187" /codon_start=1 /product="Myosin heavy chain-related protein, putative isoform 3" /protein_id="EOY23184.1" /translation="MITYQNAEQNGSIKASNGSTATVASYWDIGSEQPRRASIGQDPA SFLSPLRLNSMPQRGADAVTTKKQTHRRTNTDWSVCSTSDGSLVESGNSPIDIPREWQ EGSDSSVEKLRSENALLLRQVEVSELELQSLRKQILKETKRTQDLSGQIISLKEERDA VKTELKQLKSQKNTDEVEIESRLQAENEESNVLLEEIRQELNHEKDLNTNLRLQLQRT EDSNSNLILAVRDLNEMLEQKNREISCLSSEIEASMNIKEVQSNSKCHMNEAEDQKTV EELNKEQNDANEVHMMKHTVTDLNAELEFYRKHKVELEMHIEELSQENEVLKQENYDI SSQLKQNQQQESIKVQNEYSESLATVNELESQVQRLEDKIKQQSEEYSESLVAINELE SQVKELKKELENRTQRFEDDLNAMIHSKTEQEQSTIRAEEALRKTRWKNAVTAERLQE EFKRLSIEMATKFDENEKMALKAVAEANELHIQKGNLEEMLQKANEELELLKDRTGIE RQELSHQLDIKAKQIEQMSMELNEKTMRLEHTQKQEKEKQEAFSKEIQMLRTEIKKLT EQRSQFSDQAKENGKQSDETKKVKTSSDKTEMLIQRWNKERDELEKKIASAKKEAEKA QKQLISTRSLKDKKEKMITNLKSEMENIQVEYNDLKHSLIREEMEKEKLRKQVSQLKN DLQKKEEEASSLEKELKNNGGQAAVTPRSSNSTSAPQGSKSITMLQKKLRLLKDQINL KEAASKTSANSAPEKERNLSNMIEELESSMEQLKICHCFSADHCQEETISAGIFTTNV TKSEERGKSPDNILHSKMNTAEGMSFSIRAVPVERYEHKIRRKETKAEKELKCSASGT STGANLAELLCEVECLKERNKSMERELKDMEERYSEISLKFAEVEGERQQLVMTVRNL KNSKKN" CDS join(26536970..26539174,26539436..26539588, 26540007..26540146,26540282..26540528) /locus_tag="TCM_015163" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011187; paralog of Thecc1EG016224t1" /codon_start=1 /product="Myosin heavy chain-related protein, putative isoform 2" /protein_id="EOY23183.1" /translation="MITYQNAEQNGSIKASNGSTATVASYWDIGSEQPRRASIGQDPA SFLSPLRLNSMPQRGADAVTTKKQTHRRTNTDWSVCSTSDGSLVESGNSPIDIPREWQ EGSDSSVEKLRSENALLLRQVEVSELELQSLRKQILKETKRTQDLSGQIISLKEERDA VKTELKQLKSQKNTDEVEIESRLQAENEESNVLLEEIRQELNHEKDLNTNLRLQLQRT EDSNSNLILAVRDLNEMLEQKNREISCLSSEIEASMNIKEVQSNSKCHMNEAEDQKTV EELNKEQNDANEVHMMKHTVTDLNAELEFYRKHKVELEMHIEELSQENEVLKQENYDI SSQLKQNQQQESIKVQNEYSESLATVNELESQVQRLEDKIKQQSEEYSESLVAINELE SQVKELKKELENRTQRFEDDLNAMIHSKTEQEQSTIRAEEALRKTRWKNAVTAERLQE EFKRLSIEMATKFDENEKMALKAVAEANELHIQKGNLEEMLQKANEELELLKDRTGIE RQELSHQLDIKAKQIEQMSMELNEKTMRLEHTQKQEKEKQEAFSKEIQMLRTEIKKLT EQRSQFSDQAKENGKQSDETKKVKTSSDKTEMLIQRWNKERDELEKKIASAKKEAEKA QKQLISTRSLKDKKEKMITNLKSEMENIQVEYNDLKHSLIREEMEKEKLRKQVSQLKN DLQKKEEEASSLEKELKNNGGQAAVTPRSSNSTSAPQGSKSITMLQKKLRLLKDQINL KEAASKTSANSAPEKERNLSNMIEELESSMEQLKICHCFSADHCQEETISAGIFTTNV TKSEERGKSPDNILHSKMNTAEGMSFSIRAVPVERRKETKAEKELKCSASGTSTGANL AELLCEVECLKERNKSMERELKDMEERYSEISLKFAEVEGERQQLVMTVRNLKNSKKN " CDS join(26536970..26539174,26539442..26539588, 26540007..26540146,26540282..26540528) /locus_tag="TCM_015163" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30190.m011187" /codon_start=1 /product="Myosin heavy chain-related protein, putative isoform 4" /protein_id="EOY23185.1" /translation="MITYQNAEQNGSIKASNGSTATVASYWDIGSEQPRRASIGQDPA SFLSPLRLNSMPQRGADAVTTKKQTHRRTNTDWSVCSTSDGSLVESGNSPIDIPREWQ EGSDSSVEKLRSENALLLRQVEVSELELQSLRKQILKETKRTQDLSGQIISLKEERDA VKTELKQLKSQKNTDEVEIESRLQAENEESNVLLEEIRQELNHEKDLNTNLRLQLQRT EDSNSNLILAVRDLNEMLEQKNREISCLSSEIEASMNIKEVQSNSKCHMNEAEDQKTV EELNKEQNDANEVHMMKHTVTDLNAELEFYRKHKVELEMHIEELSQENEVLKQENYDI SSQLKQNQQQESIKVQNEYSESLATVNELESQVQRLEDKIKQQSEEYSESLVAINELE SQVKELKKELENRTQRFEDDLNAMIHSKTEQEQSTIRAEEALRKTRWKNAVTAERLQE EFKRLSIEMATKFDENEKMALKAVAEANELHIQKGNLEEMLQKANEELELLKDRTGIE RQELSHQLDIKAKQIEQMSMELNEKTMRLEHTQKQEKEKQEAFSKEIQMLRTEIKKLT EQRSQFSDQAKENGKQSDETKKVKTSSDKTEMLIQRWNKERDELEKKIASAKKEAEKA QKQLISTRSLKDKKEKMITNLKSEMENIQVEYNDLKHSLIREEMEKEKLRKQVSQLKN DLQKKEEEASSLEKELKNNGGQAAVTPRSSNSTSAPQGSKSITMLQKKLRLLKINLKE AASKTSANSAPEKERNLSNMIEELESSMEQLKICHCFSADHCQEETISAGIFTTNVTK SEERGKSPDNILHSKMNTAEGMSFSIRAVPVERRKETKAEKELKCSASGTSTGANLAE LLCEVECLKERNKSMERELKDMEERYSEISLKFAEVEGERQQLVMTVRNLKNSKKN" gene complement(26540661..26551235) /locus_tag="TCM_015164" /note="dbxref CacaoGD:Thecc1EG015164" mRNA complement(join(26540661..26541678,26541770..26543425, 26544044..26544538,26545351..26545558,26546873..26548830, 26549503..26549571,26549668..26549754,26549865..26549936, 26550617..26551235)) /locus_tag="TCM_015164" /product="Shortage in chiasmata 1, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G52290.1" /inference="similar to AA sequence:Phytozome:GSVIVT01028977001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6967t1" CDS complement(join(26541580..26541678,26541770..26543425, 26544044..26544538,26545351..26545558,26546873..26548830, 26549503..26549571,26549668..26549754,26549865..26549936, 26550617..26550916)) /locus_tag="TCM_015164" /codon_start=1 /product="Shortage in chiasmata 1, putative" /protein_id="EOY23188.1" /db_xref="Phytozome:GSVIVT01028977001" /db_xref="TAIR:AT5G52290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6P9" /translation="MRTRFLNTDYFTSSQSPTETLSFLNLPLPQLPPWHLSTFKDELL RFDSFLNVPLETDRLPIDAALSKFLSDTIPQFIDVDFRDLEDTRSPIGNVEARFSEKE AMVCNERNEAQRQTTFGSEIVEKDNVTSADDKDVQRFDVILFETPELDTFLDNARFSE KEIETFSGIPEIDNNQDETEPIVQYSNKIQESVYSVEYVTSKYNMEKNDYMLEEDSSF EDLLLLQHNTFPFLEVDEVSLGIISHSLDDVHPSVFESIDTQLWTQENNVLIASKELL GSIGYDIFKFLSDHCLLKQFPEPELAFPEMFLDMNLICVVETPQVDENFEFYMAKHDA DCFLPMSLVIFEEFQIFDVDSSQNFEVFLNRQMTREPEACDYMFREDMNLKSFNELVV SHELVLVDETFKSLPIPVLSDYRRMRSTCTVVEELLSELKLLPLSASDGIYLDWYILE EDKCNSKVYSLFQNMVEEIDSYNIDFDQETFENGKLVSEFIFSDDALSESATEQYEEA LNVSYDSTAMLNGHLMAVVSGNLEDNGCPKPGNSEQLAEKDAKRASLLFESMSQFNDL DFFLNPQKGSAGESAGPTAVAFDSNAMLPNVSSGPSVQACASTGVKLQQWDIMVYNIK LSDDIVALIEKFEKSYLAILQNETELISFLPADNFELLSLPKQKLMECIKKKMVRRTT SHKDEDIMAFVTLCAIKQMAWYMCFYGIHAARLYVDKLCQSLGCLKSRLSFLHSLIED TCGKVDTEITRSHPSLCVIQGILQSNISPSSSKVLILAEQVFWWSLKSLLMSIGLSWN ELSSFCTSANASDVYKMDSQLISDCWLVSQEHVSASFPFNKFNLIVEYGGSCGSSRVS SFSTELVGLNHLHFVKIELDGSSASKALCQGVNVPQTTKKLMEGEFHSILALDDNVNY QKLEDLLNFVPIEAKYNKKSVEGVDKIEAHFMPLPVAVENKQTQQRKMDIVIVVNTQN FDKEMIVSRRSTYQKILAMEKEGAQVVERDLNLPVDVIISSAICLVWYDFRNIGGKAA TLDAASSCLPLWIENIATNILTLLSFTFSGCFLVFEGEVPFLSTVMESSAGLYAAAAS LGIDFQLFCSYSSELTDEIILNCIDYAAKMTRGLYPKMPDSETLAESFLTKFPSINPL TAHAILSSGGVLIEFLEWSHERRIHAVQNYCVPDESVALFSALCKYGEREDSKSIMTD CSSSVSSGPDSDKCDLNVGSEGKQGRKHINNPDKTSISMDELLHVEPLNQCTDDFLNP SGLSKPYNSWMSKGSKDFQDYKKHSSSLNYIFDQKQQFALPAYLSLEVPKQYDSHIFE GPQILNEAKKPKLSVPLKDNIWGHSQGENMAMLNSLDGQNINKFENRHEDPLDEVIDL IDSPMSGEDFSSFDNSIPFSMVPKIENDSTRKSKIARKLSFRKGSRTVFPYVSEISTD SDILSSVKYPRDSFQGTNDNPGTGYNDKLPFSNQENLIWDVLAQGSAACKHSLLKNDV SNHRATPLSKAILSAHPPPGSPWTIEFLNRIREKSRLHHQNLPSDTSASPFEISRNVA KVPKRRSPSMLEFFKYQGSSTPRKILEKRKQKRYLQSSNSSKNEKASSSLSQTRTPID KRARQTLSFAMNESGSQTKLVWSDGGAHGLSKKLRNQ" mobile_element complement(26552442..26553747) /note="source:CACAO_PIF_E144_scaffold_10 1241 2392" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 26554053..26557554 /locus_tag="TCM_015165" /note="dbxref CacaoGD:Thecc1EG015165" mRNA join(26554053..26554191,26554318..26554545, 26554819..26555304,26555500..26556426,26556533..26557554) /locus_tag="TCM_015165" /product="CAP160 protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025183" /inference="similar to AA sequence:Phytozome:POPTR_0012s13180.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2086t1" CDS join(26554119..26554191,26554318..26554545, 26554819..26555304,26555500..26556426,26556533..26556591) /locus_tag="TCM_015165" /codon_start=1 /product="CAP160 protein, putative" /protein_id="EOY23189.1" /db_xref="Phytozome:POPTR_0012s13180.1" /db_xref="TAIR:AT5G52300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I491" /translation="MDTQTAYPRGYNQKHDPNIIGHHHGEDKHHHEKKSVLKKVKAKA KKIKDTITKHGHGHNHDHDDHGHQYHEGHIPDDHDLDGGDDDKEEIVDDPEVHRPPMY ESAAARVIVSGQQKDLSHAGITYGRSKALRPDPLAPRDSSETFYSGNDKTKYYNDPAM SSVPGLKALATEQPRVNSLKTTVTVEEPLAPQNTPMPRTSHQSKDANPTRTFLHGQEE YPGQPKVNLQRPKGLEEDPAAPEDTPHAYTTTNYQSKVTDPTGNGGEATGITPILHSL DKMKIYDEQNIGREQNLPPGTHHRSSKLTFPMGSHDQFSPEPTPAIPIKIPEKSPLVS ETMETTKPEEHVHNIPSDKQSNLTSYSEKISSATSAIAGKAESAKDMVASKLGYGEKD QTPANESHEGQGATKLASAVDYGKKMAVAVTEKLTPVYEKVAEVGSTVVSKLHGPGTG TASEVHTEVEEQDEGVSMKGYIAEKLRPGDEDRALSEVITDALHKRKEDPEKETRPRE KVIESVEVSRRLGTGDERDERAGSGSVNSPTTGVVDKLKGAVGSWFGKGEESPGIQQA HGSSYGNEGFSSSTGERRLQESGN" mobile_element complement(26559135..26559706) /note="source:CACAO_Helitron_E81_scaffold_3 2558 3100" /mobile_element_type="transposon:Helitron" gene 26559881..26562602 /locus_tag="TCM_015166" /note="dbxref CacaoGD:Thecc1EG015166" mRNA join(26559881..26561846,26562362..26562602) /locus_tag="TCM_015166" /product="Pentatricopeptide repeat (PPR) superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30147.m013743" /inference="similar to AA sequence:ricco:30147.m013743" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc560t10" CDS 26560246..26561712 /locus_tag="TCM_015166" /note="dbxref ricco:30147.m013743" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein" /protein_id="EOY23190.1" /db_xref="TAIR:AT1G55630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6P7" /translation="MNSIALFGTRNVYKSCYIIIVSRKLCDGGFDRDKIDSEFYYSEE PLKRMYKGSSFDSVFDGNHDNFGAYASGSVGRLPTRHGFFKSGRDDARRILEVLQQDG PGFDAKAALSEMQMRVSGFLVREVLVGILKNINYANKTRCAKLGYKFFVWSGQQETYR HTTNSYHLIMKIFAECEEYKAMWRLVDEMIENGYPTTARTFNILICTCGEAGLARKVV ERFIKSKTFNYRPFKHSYNAILHTLLVVNQYKLIEWVYQQMLAEGLAPDTLTYNILMC AEYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAAVNLLNHMKEVGL NPGVLHFTTLIDGLSRAGNLDACKYFFDEMIKIGCMPDVVCYTVIITGFIVAGELDKA QEMFDEMIANGQLPNVFTYNSMIRGYCMAGKFEEACSILKEMEARGCNPNFVVYSTLV SHLRNAGRLSEAREVIKNMVEKGQYVHLLSKIKRFRRC" mobile_element complement(26564624..26564935) /note="source:scaffold_1_CACTA_0016 1414 1732" /mobile_element_type="transposon:TIR/CACTA" gene complement(26565601..26566791) /locus_tag="TCM_015168" /note="dbxref CacaoGD:Thecc1EG015168" mRNA complement(join(26565601..26566113,26566423..26566501, 26566598..26566791)) /locus_tag="TCM_015168" /product="Copper transport protein family" /inference="alignment:exonerate- protein:2:ricco:30147.m013742.2" /inference="similar to AA sequence:Phytozome:POPTR_0012s13160.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14012t00001" CDS complement(join(26565872..26566113,26566423..26566501, 26566598..26566768)) /locus_tag="TCM_015168" /codon_start=1 /product="Copper transport protein family" /protein_id="EOY23191.1" /db_xref="Phytozome:POPTR_0012s13160.1" /translation="MIHLKDVTNHTQKAPIIRLTTSSKFSAFIKATCAKFFFSFSLFA QAFSFFLITKMAQKVVLKVLTMTDVKTKQKAIEAAADIYGVDSIAADLKDQKLTVVGQ MDAVAVVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKKE EKK" gene complement(26567534..26569795) /locus_tag="TCM_015169" /note="dbxref CacaoGD:Thecc1EG015169" mRNA complement(join(26567534..26568099,26569489..26569567, 26569680..26569795)) /locus_tag="TCM_015169" /product="Heavy metal transport/detoxification superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029705t1" /inference="similar to AA sequence:Phytozome:Glyma16g31260.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6980t1" CDS complement(join(26567771..26568099,26569489..26569567, 26569680..26569688)) /locus_tag="TCM_015169" /note="paralog of Thecc1EG029705t1" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein" /protein_id="EOY23192.1" /db_xref="Phytozome:Glyma16g31260.1" /db_xref="TAIR:AT3G48970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CUG5" /translation="MSAMLEVRVPNLDCEGCVSKLKKALFKLKGVEEVEVEMEIQKIT VRGYALEEKKVLKAIKRAGKAAEPWPFPGYSHYASFYKYPTYIVNHYYDSYKNEASNG VHTFFQTPAVYSVAVASDEAVASLFSDDNPHACSIM" mobile_element 26568298..26569047 /note="source:CACAO_Mariner_E38_scaffold_2 1325 2088" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 26572559..26577035 /locus_tag="TCM_015170" /note="dbxref CacaoGD:Thecc1EG015170" mRNA join(26572559..26573435,26574456..26575021, 26575161..26575353,26575475..26575539,26575645..26575855, 26576097..26576373,26576941..26577035) /locus_tag="TCM_015170" /product="Glycosyltransferase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s07740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016228t1" /inference="similar to AA sequence:ricco:30147.m013740" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1906t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6996t1" mRNA join(26572700..26573435,26574456..26575021, 26575161..26575353,26575475..26575539,26575645..26575855, 26576097..26576724) /locus_tag="TCM_015170" /product="Glycosyltransferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s07740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016228t1" /inference="similar to AA sequence:ricco:30147.m013740" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6996t1" mRNA join(26572700..26573435,26574456..26575021, 26575161..26575353,26575475..26575539,26575756..26575855, 26576097..26576724) /locus_tag="TCM_015170" /product="Glycosyltransferase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s07740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016228t1" /inference="similar to AA sequence:ricco:30147.m013740" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b014658t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6996t1" CDS join(26573256..26573435,26574456..26575021, 26575161..26575353,26575475..26575539,26575645..26575855, 26576097..26576373,26576941..26576945) /locus_tag="TCM_015170" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013740; paralog of Thecc1EG016228t1" /codon_start=1 /product="Glycosyltransferase isoform 2" /protein_id="EOY23194.1" /db_xref="TAIR:AT5G23850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4YF69" /translation="MNINMRENNMQQGNGSGLFSQFTETIWRPFAKSSARSSAIFVVF IVLLVGAFSTHLLDTTTFLGSLAQKPMLSTRTSRGNPKKPRQQRDIPLNCTARNLTRA CPTNDPTAIEEEPDSSLNAMCPDYFRWIHEDLRPWAYTGISMDMLKRAEKTANFRLVV VNGRAYVQRYRRSFQTRDVFTLWGILQLLRRYPGKVPDLDLMFDCVDWPVIKTSDYGG PNATTPPPLFRYCKDDETLDIVFPDWSFWGWPEINIKPWVPLLNDLMEGNKRMGWEGR EPHAYWKGNPNVATTRQDLLKCNVSDKQDWGARVYAQDWARESQQGYKQSDLANQCIH RFKIYIEGSAWSVSEKYILACDSLTLLVKPRYYDFFTRSLEPMRHYWPIKDDDKCRSI KHAVDWGNGHQQEAQAIGKAASEFIKEGLKMDYVYDYMFHLLNEYAKLLRYKPTVPRK AVELCSETMACPAEGLQKKFMMESMVKGPSVTSPCTMPPPYDPASLYA" CDS join(26573256..26573435,26574456..26575021, 26575161..26575353,26575475..26575539,26575645..26575855, 26576097..26576450) /locus_tag="TCM_015170" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013740; paralog of Thecc1EG016228t1" /codon_start=1 /product="Glycosyltransferase isoform 1" /protein_id="EOY23193.1" /db_xref="TAIR:AT5G23850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4YF69" /translation="MNINMRENNMQQGNGSGLFSQFTETIWRPFAKSSARSSAIFVVF IVLLVGAFSTHLLDTTTFLGSLAQKPMLSTRTSRGNPKKPRQQRDIPLNCTARNLTRA CPTNDPTAIEEEPDSSLNAMCPDYFRWIHEDLRPWAYTGISMDMLKRAEKTANFRLVV VNGRAYVQRYRRSFQTRDVFTLWGILQLLRRYPGKVPDLDLMFDCVDWPVIKTSDYGG PNATTPPPLFRYCKDDETLDIVFPDWSFWGWPEINIKPWVPLLNDLMEGNKRMGWEGR EPHAYWKGNPNVATTRQDLLKCNVSDKQDWGARVYAQDWARESQQGYKQSDLANQCIH RFKIYIEGSAWSVSEKYILACDSLTLLVKPRYYDFFTRSLEPMRHYWPIKDDDKCRSI KHAVDWGNGHQQEAQAIGKAASEFIKEGLKMDYVYDYMFHLLNEYAKLLRYKPTVPRK AVELCSETMACPAEGLQKKFMMESMVKGPSVTSPCTMPPPYDPASLYALLSKKENSIK QVEEWEKKFWEMQK" CDS join(26573256..26573435,26574456..26575021, 26575161..26575353,26575475..26575539,26575756..26575855, 26576097..26576450) /locus_tag="TCM_015170" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m013740; paralog of Thecc1EG016228t1" /codon_start=1 /product="Glycosyltransferase isoform 3" /protein_id="EOY23195.1" /db_xref="TAIR:AT5G23850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4YF69" /translation="MNINMRENNMQQGNGSGLFSQFTETIWRPFAKSSARSSAIFVVF IVLLVGAFSTHLLDTTTFLGSLAQKPMLSTRTSRGNPKKPRQQRDIPLNCTARNLTRA CPTNDPTAIEEEPDSSLNAMCPDYFRWIHEDLRPWAYTGISMDMLKRAEKTANFRLVV VNGRAYVQRYRRSFQTRDVFTLWGILQLLRRYPGKVPDLDLMFDCVDWPVIKTSDYGG PNATTPPPLFRYCKDDETLDIVFPDWSFWGWPEINIKPWVPLLNDLMEGNKRMGWEGR EPHAYWKGNPNVATTRQDLLKCNVSDKQDWGARVYAQDWARESQQGYKQSDLANQCIH RSLEPMRHYWPIKDDDKCRSIKHAVDWGNGHQQEAQAIGKAASEFIKEGLKMDYVYDY MFHLLNEYAKLLRYKPTVPRKAVELCSETMACPAEGLQKKFMMESMVKGPSVTSPCTM PPPYDPASLYALLSKKENSIKQVEEWEKKFWEMQK" gene complement(26576732..26580653) /locus_tag="TCM_015171" /note="dbxref CacaoGD:Thecc1EG015171" mRNA complement(join(26576732..26579838,26580285..26580653)) /locus_tag="TCM_015171" /product="Disease resistance family protein / LRR family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene19910" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015172t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s11730.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS complement(join(26576961..26579838,26580285..26580307)) /locus_tag="TCM_015171" /note="paralog of Thecc1EG015172t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein, putative" /protein_id="EOY23196.1" /db_xref="Phytozome:POPTR_0010s11730.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HW18" /translation="MPTELMKRLSLSDNHFSSMDKLFNAMLLLLTLFTEIALLCSCQN ASFSCIQSERQALLKLKQSFSGSSHCLSSWKGKNCCMWKGVSCDENNGHVVKLNLRAG STSWLDNGSSLRAREVNSYITELRYLKYLDLSGNDFQDSAIPQFFSLMKQLRYLNISD AGFSGSVPQNLGNLTSLRVLDLSTEHRGSTLRVDDIQWISHLVSLQQLGMAGIHLGEA RNLFQVLNMLPSLQSLHLSHCGIHNFHFSRLPINSTFHGSLQRLDLGGNDLGGPVPIA LQNMTLLRILDLSYNRFNSSIPNWFGNFKNLIHLNLAGNDFSSTKKGLALILGNMCYL KSLDLSFSQFQDDLIRIYENVTGCVGHDLETLNLDYSMISGHIPERLEMLKNLKHLHL YGNQLNGTIPESLGQLSNLETIDLSHNSLEGAISEVHFATLSKLKVLSISSNSLTIKI KSNWVPPFQLECIEMGSCKFGTQFPQWLRTQLKATTLVLSNNSISGILPKWIKELNLS LLDLSHNQITGSIPKFSSNLMTIDLSNNLISGTLTEMIGDNNVLSKLQSLILSDNRVN GSIPNSFCHIETLEVLQLSKNKLSANIPDCWRDYQSLQVLDLSSNNLSGVIPSSIGHL NSLQWLHLSNNSLSGEPPLALKNCRDLVVLDLGENALSGHVPKWIGDGFWQLSVLRLR KNKFSGTIPSQLCHISTLQILDLAENNLKGKIPYCFADFIGMVKTDVSDLEGYSGIFL TQWNNEHLTEVIKARSLEYTKTLRFLVSMDLSSNKLEGSIPEELALLTGLIGLNLSHN QLSGQFPNKIGKLESLESLDLSFNELSGMIPGSMSSLTKLSHLNLSYNNFSGKIPEGN QLQTLDDPFIYAGNPLLCGAPLKKCWDDKHHQGKNGNAKHNSAEKMWFYIVIMSGYAT GFWGVVAALIFEKSWRHAYFLFVDKCKDWVLVLVALKMASVKNLIKGNRTDE" gene complement(26580493..26584510) /locus_tag="TCM_015172" /note="dbxref CacaoGD:Thecc1EG015172" mRNA complement(join(26580493..26580811,26581562..26584510)) /locus_tag="TCM_015172" /product="Disease resistance family protein / LRR family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene19910" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015171t1" /inference="similar to AA sequence:ricco:29929.m004582" /note="quality class is strong, express is weak, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g6990t1" CDS complement(26581581..26584481) /locus_tag="TCM_015172" /note="dbxref ricco:29929.m004582; paralog of Thecc1EG015171t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein, putative" /protein_id="EOY23197.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5J4" /translation="MGKLFNLVLIVLTLCIEIAPFCSCQNSSFISCIEGERQTLLTLK QSFEDPFHRLSSWKGKNCCTWKGVSCDENNGHVVKLNLRATSRFSGETVLGKFSEESS LVAREVNSCLLELRYLEHLDLSGNDFQCSAIPHFFSLMRQLRYLNISNARFNGSVPNN LGNLTGLRVLDVSHDQEPWALRVDDVQWISNLSSLRHLGMAGIYLGEAPDFSPVLNML PSLLSLHLSLCGLNNSHLSRHPINSTFHRIRHLDLGNNHFTCPVPLMLQNMTSLRILD LSLNLFSCSIQSSFDNLKSLVHLNLAGNDFSSIENGLISILGNMCYLKSLDLSFNQFQ GEKIGKYRNLSGCAGHDLETLDLGSGRTGGQIPDWLGIGGHIPDWLGMLKNLKYLDLS GNQLNGTIPESLGQLSNLETIDLSHNSLEGAISEVHLAALSKLKVLSISSNSLTITIK SNWVPPFQLEYIEMESCKFGTEFPQWLQTQLKAITLVLSNTSISGTLPNWIMDMNLYE LDLSHNQINGTLPNFPSNLKRVDLSSNWISGSLPEIIGDMLPQLRYLILSDNLMNGPI PNSLCRIKTLVVLELSKNSLSGNIPNCWRDHHVIEVLDLSSNKLSGVIPSSIGHLDSL RWLDLSNNNLNGELPLDLKSCTSLRLLDVGGNALSGNVPKWIGESFRFLTILRLRENK LNGSIPSQLCQLSADLHILDLAENNIKGRIPHCFGNFTGMVLHGEGDIIPLEPSKYLM YWEDEHLTEVMKGRFLEYTSTLSLLVYLDLSRNKLKGQIPQELTFLTGLIGLNLSHNQ LSGTIPKKIGELGMLESLDLSVNELSGVIPSSMSTLTKLSHLNVSYNNFSGQIPNGNQ LQTLDDPSIYAGNPLLCGPPLLKKCLDDEPHQGNNDNGRDNPAEKMWFFIVIMSGFAT GFWGVVGVLIFKKSWRHAYFLLVDRSKDWVLVYVTLKIASVKTMIKGNRTDE" gene complement(26585151..26586624) /locus_tag="TCM_015173" /note="dbxref CacaoGD:Thecc1EG015173" mRNA complement(join(26585151..26585407,26585518..26585777, 26586511..26586624)) /locus_tag="TCM_015173" /product="Actin depolymerizing factor 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016232t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s13080.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7004t3" CDS complement(join(26585257..26585407,26585518..26585777, 26586511..26586513)) /locus_tag="TCM_015173" /note="paralog of Thecc1EG016232t1" /codon_start=1 /product="Actin depolymerizing factor 7" /protein_id="EOY23198.1" /db_xref="Phytozome:POPTR_0015s13080.1" /db_xref="TAIR:AT4G25590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UC71" /translation="MANSASGMAVHDECKLKFLELKAKRNYRFIVFKIQDQQVVVDKV GSPQETYDDFQASLPADECRYAVFDFDFITSENCQKSKIFFIAWSPDTSKVRSKMVYA SSKDRFKRELDGIQVELQATDPSEMSFDIIKGRAL" gene complement(26587262..26590964) /locus_tag="TCM_015174" /note="dbxref CacaoGD:Thecc1EG015174" mRNA complement(join(26587262..26587838,26589360..26589459, 26589651..26589742,26590246..26590375,26590469..26590964)) /locus_tag="TCM_015174" /product="Vascular-related nac-domain 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025272" /inference="similar to AA sequence:Phytozome:POPTR_0015s13070.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05443t00001" mRNA complement(join(26587631..26587838,26589369..26589459, 26589651..26589742,26590246..26590375, 26590469..>26590777)) /locus_tag="TCM_015174" /product="Vascular-related nac-domain 6 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025272" /inference="similar to AA sequence:Phytozome:POPTR_0015s13070.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc686t2; inference alignment:Newbler:10:TSA:cgbaP1_g05443t00001" CDS complement(join(26587657..26587838,26589360..26589459, 26589651..26589742,26590246..26590375,26590469..26590957)) /locus_tag="TCM_015174" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Vascular-related nac-domain 6 isoform 1" /protein_id="EOY23199.1" /db_xref="Phytozome:POPTR_0015s13070.1" /db_xref="TAIR:AT5G52380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CV37" /translation="MCFIRLDNRKKSIEFARSGSKVLCEPFLVTFSVQPNTLLKPLPL PRHPFLSICSFQFNMANKRQKFARKQYKEAHPELFPTPQPTQAKDPDKKKKKKYKKSQ FKRKKEESKEPKHLNKPYKKGIRKHPLRIPGMKPGESCYICKAKDHIAKLCPQKAQWD KHTICLLCRHRGHSLKNCPEVMDKKLCYNCGETGHSLSKCPQPLQDGGTKFAKCFICK EIGHLSKSCPKNTHGVYPKGGCCKICGGVSHLAKDCPDKGKKASAAATRGCASFEHGE RPTGQVTKFISGDDLEDDFVTADFASTENDASDAKDAKIKSKKKQGPKVVNFVG" CDS complement(join(26587657..26587838,26589369..26589459, 26589651..26589742,26590246..26590375, 26590469..>26590777)) /locus_tag="TCM_015174" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Vascular-related nac-domain 6 isoform 2" /protein_id="EOY23200.1" /db_xref="Phytozome:POPTR_0015s13070.1" /db_xref="TAIR:AT5G52380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CV37" /translation="NKRQKFARKQYKEAHPELFPTPQPTQAKDPDKKKKKKYKKSQFK RKKEESKEPKHLNKPYKKGIRKHPLRIPGMKPGESCYICKAKDHIAKLCPQKAQWDKH TICLLCRHRGHSLKNCPEVMDKKLCYNCGETGHSLSKCPQPLQDGGTKFAKCFICKEI GHLSKSCPKNTHGVYPKGGCCKICGGVSHLAKDCPDKGKKASAAATRAFEHGERPTGQ VTKFISGDDLEDDFVTADFASTENDASDAKDAKIKSKKKQGPKVVNFVG" gene 26594422..26597232 /locus_tag="TCM_015175" /note="dbxref CacaoGD:Thecc1EG015175" mRNA join(26594422..26594904,26595586..26595855, 26595971..26597232) /locus_tag="TCM_015175" /product="Tubulin beta 8" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g37960.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016233t1" /inference="similar to AA sequence:Phytozome:Glyma20g29840.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9209t1" CDS join(26594511..26594904,26595586..26595855, 26595971..26596653) /locus_tag="TCM_015175" /note="paralog of Thecc1EG016233t1" /codon_start=1 /product="Tubulin beta 8" /protein_id="EOY23201.1" /db_xref="Phytozome:Glyma20g29840.1" /db_xref="TAIR:AT5G23860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q01GL4" /translation="MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGDNELQL ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWA KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSMGGGTGSGMGTLLISKIREEYP DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQIINVQ NKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGYEYEEEEDELQDDA" gene complement(26597242..26600517) /locus_tag="TCM_015176" /note="dbxref CacaoGD:Thecc1EG015176" mRNA complement(join(26597242..26597604,26597894..26597973, 26598042..26598834,26598914..26599078,26599182..26599400, 26599730..26599835,26600331..26600517)) /locus_tag="TCM_015176" /product="AMP-dependent synthetase and ligase family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT3G48990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015177t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400025273" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(join(26597386..26597604,26597894..26597973, 26598042..26598834,26598914..26599078,26599182..26599400, 26599730..26599835,26600331..26600431)) /locus_tag="TCM_015176" /note="paralog of Thecc1EG015177t1" /codon_start=1 /product="AMP-dependent synthetase and ligase family protein, putative" /protein_id="EOY23202.1" /db_xref="Phytozome:PGSC0003DMP400025273" /db_xref="TAIR:AT3G48990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E7DDV3" /translation="MEVTFFEKESRNGCQRLPGPSTVRKPQALEKGNQSWPHQLCKMT SLLTSSRLNEFHYAVIKGKCAGWTKQPGREKHGHSYTIRITEARRQRIPSPASLSISG KFDITHSRLQELVEHAASRLVTAGFGRGDVVALAFLNTIEFVIMFLAITRARATAAPL NPAYTTEEFEFYVSDSESKLLLTPQNGNTSAQAAASNAQPRSAYSSMTRLTWHSSSTL LAPQGVPLTQLNIVSSVKNTISVYKFTESDSSLLVPPLFHVHGLLTGLLSPLGAGGAV AIPAADRFSASTFWQDVKQDTATWYTAVPTIHQILLERHVANPEFVYPKLRFIRSCSA SLALAILERLEEAFGAPVLEAYAMPEATRLTATNPLVEDGRHKSGSVGKPVGQEVVIL DENGVPQEANVRGEMCIGGPNVTKGYKNNPEANKAGFEYGWFHTGDLGYFDSDGYLYL VDRIKEFINRGVDAVLLFHPDIARAVASGVPDDKYGEEINCTIVPREGWSIGEAELQE FCRKNLAAFKVPKKVFITDSLPKTASGKIHRRFIAQHFLARISTSESQNFLA" gene complement(26600558..26610074) /locus_tag="TCM_015177" /note="dbxref CacaoGD:Thecc1EG015177" mRNA complement(join(26600558..26601214,26601791..26601894, 26602232..26603279,26603369..26604012,26605451..26605943, 26609972..26610074)) /locus_tag="TCM_015177" /product="AMP-dependent synthetase and ligase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028940001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016236t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028940001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7013t1" CDS complement(join(26600996..26601214,26601791..26601894, 26602232..26603279,26603369..26603569)) /locus_tag="TCM_015177" /note="paralog of Thecc1EG016236t1" /codon_start=1 /product="AMP-dependent synthetase and ligase family protein" /protein_id="EOY23203.1" /db_xref="Phytozome:GSVIVT01028940001" /db_xref="TAIR:AT3G48990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E7DDV3" /translation="MESLTLTELLKQVAGEFPHRLAVSVPGKFDITHYKLHEVIELAA SRLLANGIGAGDVVALTFPNTIEFVIMFLAVIRARATAAPLNPAYTTEEFEFYLSDSE SKLLLTSIEGNSSAQAAASKLNIPHATATLHDADSELALSLSQQDSDLNSVSKLTNEP SDVALFLHTSGTTSRPKGVPLTQFNLASSVKNVKSVYKLTESDATVLVLPLFHVHGLI AGLLSSLGAGAAVTLPSAGRFSASTFWQDMNKYKATWYTAVPTIHQIILDRHLGTPEP VYPKLRFIRSCSASLAPAILARLEEAFGAPVLEAYAMTEATHLMASNPLPENGPHKAG SVGRPVGQEMVILDENGVPQVANVNGEVCIRGPNVTKGYRNNPEANKSAFRFGWFHTG DLGYFDRDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDVAQEVAFGVPDDKYGE EVNCAIVPREGSNVDEAEVQRFCKKSLAAFKVPKRVFFTDALPKTASGKIQRRIVAEH FLAQISTAKVPKFGA" gene complement(26610116..26611307) /locus_tag="TCM_015178" /note="dbxref CacaoGD:Thecc1EG015178" mRNA complement(join(26610116..26610602,26610712..26611038, 26611137..26611307)) /locus_tag="TCM_015178" /product="PAR1 protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028938001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021793t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028938001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc271t1" CDS complement(join(26610457..26610602,26610712..26611038, 26611137..26611215)) /locus_tag="TCM_015178" /note="paralog of Thecc1EG021793t1" /codon_start=1 /product="PAR1 protein" /protein_id="EOY23204.1" /db_xref="Phytozome:GSVIVT01028938001" /db_xref="TAIR:AT5G52390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PER3" /translation="MASNFSLMRTLAVLALAFALCLQATIGEITCEHLDQDTCTYAVS STGKRCVLEKHVRRSGEEEYTCRTSEIEADKIKNWIETDQCVKACGLDRKSFGISSDS LLDSRFTEMLCSPQCYNSCPNVVDLYFNLAAGEGVFLPKLCEAQGANARRGMAEIRSS GMVAPGPASGAKFFGVAPAMAPF" mobile_element 26618999..26619313 /note="source:scaffold_10_CACTA_0130 6257 6574" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26619327..26619861 /note="source:scaffold_10_CACTA_0130 6701 7362" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26619709..26620230 /note="source:CACAO_on_E595_scaffold_6 1006 1546" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26620027..26620744 /note="source:scaffold_10_CACTA_0130 8891 9606" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26623407..26623538) /note="source:scaffold_1_CACTA_0016 1409 1536" /mobile_element_type="transposon:TIR/CACTA" gene 26624128..26630075 /locus_tag="TCM_015180" /note="dbxref CacaoGD:Thecc1EG015180" mRNA join(26624128..26624403,26624527..26624674, 26624930..26625048,26625146..26625233,26625406..26625557, 26626078..26626230,26626304..26626411,26627268..26627379, 26627891..26628034,26628124..26628161,26628255..26628347, 26628487..26628570,26629210..26629359,26629580..26630075) /locus_tag="TCM_015180" /product="RNA polymerase III subunit RPC82 family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028933001" /inference="similar to AA sequence:Phytozome:GSVIVT01028933001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05740t00001" mRNA join(26624223..26624403,26624527..26624674, 26624930..26625048,26625146..26625233,26625406..26625557, 26626078..26626230,26626304..26626411,26627268..26627379, 26628253..26628347,26628487..26628570,26629210..26629359, 26629580..26630067) /locus_tag="TCM_015180" /product="RNA polymerase III subunit RPC82 family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028933001" /inference="similar to AA sequence:Phytozome:GSVIVT01028933001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc116t9_C2; inference alignment:Newbler:10:TSA:cgbaB_g05740t00001" CDS join(26624335..26624403,26624527..26624674, 26624930..26625048,26625146..26625233,26625406..26625557, 26626078..26626230,26626304..26626411,26627268..26627379, 26627891..26628034,26628124..26628161,26628255..26628347, 26628487..26628570,26629210..26629359,26629580..26629693) /locus_tag="TCM_015180" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA polymerase III subunit RPC82 family protein, putative isoform 1" /protein_id="EOY23205.1" /db_xref="Phytozome:GSVIVT01028933001" /db_xref="TAIR:AT3G49000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CV20" /translation="MVTQHGIKYAVLLITTHFGDLVAKVCECLLRKGPLTLQAIVRFT ELTSSQVKNSLLVLIQHNCVQAFILEQPGSHGDGAKLNSQYIALFNNIIHRWRFPKFL TIVSQKLDKQCVELIEALLLHGRLTLKQMSDRAKSAQNEGDDVILDAVREAFIKLLNA HFVERCPAAEPVLTKPTEEETSARKRVPKSAKILEGKETLEQRVLEAATPSEALRFLL VTRTEPAADGGKDENNSSSMTVGKKRKLDALESETEGEATDEQVVLWRANFEEFIRRL RHKAFIENVRACLDDGAVIVISAMLEATRTAEKKVKTENSVPLSLNSIYEEVIKSEEG RNITFDRVRASLVQLSCPPFVKAVNESYSIDFKKIIELAQNDEVESIVLKRYGRDAYR MFRLLSSTARLLETDKIADTAFVEKKDTTKILYKLWKDDYLHMEKLQLTGARQSQFLL WKVNKNTLWEHVLDEMFHAALNLSLRVAHELEQEKELLNLPQDKRVNRLRKVRLLLES SQMKLDDAIMLFHDF" CDS join(26624335..26624403,26624527..26624674, 26624930..26625048,26625146..26625233,26625406..26625557, 26626078..26626230,26626304..26626411,26627268..26627379, 26628253..26628347,26628487..26628570,26629210..26629359, 26629580..26629693) /locus_tag="TCM_015180" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA polymerase III subunit RPC82 family protein, putative isoform 2" /protein_id="EOY23206.1" /db_xref="Phytozome:GSVIVT01028933001" /db_xref="TAIR:AT3G49000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CV20" /translation="MVTQHGIKYAVLLITTHFGDLVAKVCECLLRKGPLTLQAIVRFT ELTSSQVKNSLLVLIQHNCVQAFILEQPGSHGDGAKLNSQYIALFNNIIHRWRFPKFL TIVSQKLDKQCVELIEALLLHGRLTLKQMSDRAKSAQNEGDDVILDAVREAFIKLLNA HFVERCPAAEPVLTKPTEEETSARKRVPKSAKILEGKETLEQRVLEAATPSEALRFLL VTRTEPAADGGKDENNSSSMTVGKKRKLDALESETEGEATDEQVVLWRANFEEFIRRL RHKAFIENVRACLDDGAVIVISAMLEATRTAEKKVKTENSEVESIVLKRYGRDAYRMF RLLSSTARLLETDKIADTAFVEKKDTTKILYKLWKDDYLHMEKLQLTGARQSQFLLWK VNKNTLWEHVLDEMFHAALNLSLRVAHELEQEKELLNLPQDKRVNRLRKVRLLLESSQ MKLDDAIMLFHDF" gene complement(26630093..26632867) /locus_tag="TCM_015181" /note="dbxref CacaoGD:Thecc1EG015181" mRNA complement(join(26630093..26630829,26631262..26631316, 26632609..26632867)) /locus_tag="TCM_015181" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7041t1" CDS complement(join(26630731..26630829,26631262..26631316, 26632609..26632679)) /locus_tag="TCM_015181" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23207.1" /translation="MRISRTPTSKSGLLLNSFDPILCRFFRHLTSGIAKQLMKFEKMI LETDPPVNLVKEQQTLSGETVFGVQASDKF" mobile_element 26632795..26633710 /note="source:CACAO_on_E545_scaffold_5 1 957" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(26633439..26633751) /note="source:CACAO_on_E33_A_scaffold_3 2875 3218" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26637503..26638320 /note="source:CACAO_Again_on_S_E8_scaffold_1 1 819" /mobile_element_type="transposon:TIR/hAT" mobile_element 26639869..26640062 /note="source:CACAO_Again_on_E60_scaffold_2 128 276" /mobile_element_type="transposon:TIR/hAT" mobile_element 26643925..26644329 /note="source:CACAO_on_E458_scaffold_2 1 410" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26643926..26644391 /note="source:CACAO_MITE_S192_scaffold_8 2 468" /mobile_element_type="transposon:TIR/MITE" gene 26644902..26650165 /locus_tag="TCM_015182" /note="dbxref CacaoGD:Thecc1EG015182" mRNA join(26644902..26645267,26645393..26645622, 26646261..26646872,26649485..26650165) /locus_tag="TCM_015182" /product="Cytochrome P450, family 715, subfamily A, polypeptide 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006256" /inference="similar to AA sequence:Phytozome:POPTR_0015s13020.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7044t1" CDS join(26644979..26645267,26645393..26645622, 26646261..26646872,26649485..26649913) /locus_tag="TCM_015182" /codon_start=1 /product="Cytochrome P450, family 715, subfamily A, polypeptide 1" /protein_id="EOY23208.1" /db_xref="Phytozome:POPTR_0015s13020.1" /db_xref="TAIR:AT5G52400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHC0" /translation="MGFFKLSQTFLSLAMLTFLLYFFLRLLFSCWILPIRAYRKIKKN GFGGPAPSFPLGNIREMKSNKNINDSSLGSSGISHDIHSTVFPYFARWQKSHGKVFIY WLGTEPFLYIAEPEFLKKMSSGVLGKSWGKPNVFKHDREPMFGSGLVMVEGDDWVRHR HVITPAFSPANLKAMASLMVAPATKMLDRWATLINSGKPEIDVEREIIKTAGEIIART SFGLSYESGSKVLEKLRATQITLFNSNRYVGVPFSKFMCPKKNLEAKKLGKEIDQLLL SIIDARQKSWDGSPQKDLLSLLMQGSHVDGRVGKSLTATELVDECKTFFFGGHETTAL ALTWTLLLLAMHPDWQNQLREEIREVIGDDEEIDFTKLAGLKKMGWVMNEVLRLYSPA PNAQRQSREDIKVDDLVIPNGTNMWIDVVAMHHDPAMWGDDVNEFRPERFKDDHLYGG CKHKMGFLPFGFGGRMCVGRNLTMMEYKVVLTLILTRFSFSPSPSYRHSPSILLSLRP RHGLPLIVQPL" mobile_element complement(26645959..26646019) /note="source:scaffold_2_CACTA_0280 598 659" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26650301..26650385) /note="source:scaffold_4_CACTA_0489 7080 7156" /mobile_element_type="transposon:TIR/CACTA" gene complement(26651865..26667684) /locus_tag="TCM_015183" /note="dbxref CacaoGD:Thecc1EG015183" mRNA complement(join(26651865..26652403,26653009..26653209, 26653511..26653603,26653869..26653967,26654794..26654889, 26655519..26655611,26656780..26656851,26657030..26657164, 26657243..26657294,26657403..26657488,26657785..26657857, 26658210..26658289,26658552..26658669,26658771..26658871, 26659021..26659149,26659599..26659769,26659838..26659950, 26660080..26660258,26660495..26660649,26660974..26661032, 26661421..26661500,26661586..26661707,26661818..26661992, 26662084..26662271,26662381..26662464,26662793..26662915, 26663006..26663156,26663451..26663593,26663676..26663762, 26664428..26664508,26664626..26664735,26665210..26665283, 26665384..26665462,26665591..26666342,26667297..26667684)) /locus_tag="TCM_015183" /product="Tripeptidyl peptidase ii" /inference="alignment:exonerate-protein:2:frave:gene13257" /inference="similar to AA sequence:frave:gene13257" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7165t5" CDS complement(join(26652245..26652403,26653009..26653209, 26653511..26653603,26653869..26653967,26654794..26654889, 26655519..26655611,26656780..26656851,26657030..26657164, 26657243..26657294,26657403..26657488,26657785..26657857, 26658210..26658289,26658552..26658669,26658771..26658871, 26659021..26659149,26659599..26659769,26659838..26659950, 26660080..26660258,26660495..26660649,26660974..26661032, 26661421..26661500,26661586..26661707,26661818..26661992, 26662084..26662271,26662381..26662464,26662793..26662915, 26663006..26663156,26663451..26663593,26663676..26663762, 26664428..26664508,26664626..26664735,26665210..26665283, 26665384..26665462,26665591..26665993)) /locus_tag="TCM_015183" /note="dbxref frave:gene13257" /codon_start=1 /product="Tripeptidyl peptidase ii" /protein_id="EOY23209.1" /db_xref="TAIR:AT4G20850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JVN6" /translation="MQNPLFKRLSWANSTLTLLSPTFDTLPSLLIIGPKRKLRKNNFR KRSKKEWSHHLNGSGTRSGTYRAMPCSLIETSNSSCGGGGGGEQNGRLRNFKLNESTF LASLMPKKEIAADRFVEAHPHYDGRGALIAIFDSGVDPAAAGLQLTSDGKPKILDVID CTGSGDVDTSKVVKADGEGRIRGASGASLVVNSSWKNPSGEWHVGYKLIYELFTDTLT SRLKEERKKIWDEKNQEEIAKAVMHLDEFDQKHTKVEDPKLKRAREDLQNRIDILRKQ AEGYDDKGPVIDAVVWHDGEVWRVALDTQSLEDGPNCGKLADFVPLTNYRIERKYGVF SKLDACTFVVNVYYEGNILSIVTDSSPHGTHVAGIATAFHPQEPLLNGVAPGAQLISC KIGDSRLGSMETGTGLTRALIAAVEHKCDLINMSYGEATLLPDYGRFVDLVNEVVNKH RLIFVSSAGNSGPALSTVGAPGGTSSSIIGVGAYVSPAMAAGAHSVVEPPAEGLEYTW SSRGPTADGDLGVCISAPGGAVAPVPTWTLQGRMLMNGTSMASPSACGGIALLISAMK AEGISVSPYSVRKALENTSVPLGVLPEDKLTTGQGLMQVDNAYEYIRNSRDFSCVWYQ ITINQSGKSTPASRGIYLREATASQQSTEWAVQVEPKFHEDASKLEELVPFEECIELH SSDNTVVRAPEYLLLTHNGRSFNIVVDPTKLNDGLHYYEVYGIDCKAPSRGPLFRIPI TITKPKVVMNRPPLISFSRMSFLPGHIERRYIEVPLGASWVEATMRTSGFDTSRRFFV DTVQICPLRRPIKWESVVTFSSPTAKSFAFPVVGGQTMELAIAQFWSSGMGSNEATIV DFEIVFHGIGVNKTEVVLDGSEAPIRIEAEALLASEKLAPTAVLNKIRVPYRPTEAKL CTLPTNRDKLPSGKQILALTLTYKFKLEDGAEVKPHIPLLNNRIYDTKFESQFYMISD TNKRVYAMGDCYPKSSKLPKGEYILQLYLRHDNVQYLEKMKQLVLFIERNLEEKDIAR LNFFSEPDGPVMGNGTFKSSVLVPGKKEAFYLSPPNKDKLPKNSSQGSVLLGAISHGK LSYASQEERKNPKKNPVSYQISYVIPPNKTDEDKGKSSSSTCTKTVAERLEEEVRDAK IKVFGSLKQDTDEDRLEWKILAQSLKSEYPKYTPLLVKILESLLSQSNIGDKIHHYEE VIDAANEVVDSIDRDELAKFFSLMSDPEDEEAEKNKKKMETTRDQLAEALYQKGLALA EIESVKGEKASALVTEGTKDVDQAGDEGIDIQSDLFEENFKELNKWVDLKSSKYGTLS VLRERRSGRLGTALKVLNDMIQDDGEPPKKKFYELKLTLLDDIGWSHLSTYEGQWMHV RFPTSLPLF" gene complement(26667511..26674322) /locus_tag="TCM_015185" /note="dbxref CacaoGD:Thecc1EG015185" mRNA complement(join(26667511..26667958,26668046..26668156, 26668457..26668605,26668784..26668889,26669004..26669081, 26669165..26669221,26669768..26669828,26669906..26670030, 26670229..26670315,26670584..26670663,26672408..26672537, 26673599..26673681,26673795..26674062)) /locus_tag="TCM_015185" /product="Pectinacetylesterase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028921001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015186t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028921001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01011t00001; inference alignment:Newbler:10:TSA:cgbaL_g01011t00001" mRNA complement(join(26667513..26667961,26668046..26668158, 26668457..26668605,26668784..26668889,26669004..26669081, 26669165..26669221,26669768..26669828,26669906..26670030, 26670229..26670315,26670584..26670663,26672408..26672537, 26673599..26673681,26673795..26674066,26674152..26674322)) /locus_tag="TCM_015185" /product="Pectinacetylesterase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028921001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015186t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028921001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7066t3; inference alignment:Newbler:10:TSA:cgbaL_g01011t00001" CDS complement(join(26667947..26667958,26668046..26668156, 26668457..26668605,26668784..26668889,26669004..26669081, 26669165..26669221,26669768..26669828,26669906..26670030, 26670229..26670315,26670584..26670663,26672408..26672537, 26673599..26673681,26673795..26673936)) /locus_tag="TCM_015185" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015186t1" /codon_start=1 /product="Pectinacetylesterase family protein isoform 1" /protein_id="EOY23210.1" /db_xref="Phytozome:GSVIVT01028921001" /db_xref="TAIR:AT5G23870.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DFR3" /translation="MNVKMMMNIEIMLSLLLSLAFAPWCIYSQEQLLVGMTLVRNAIA YGAVCLDGSLPAYHLHRGFGAGANNWILQFEGGGWCNDIPSCLERANTRRGSTRYMNK FEVFSGILSDNDSLNPDFYNWNRVKLRYCDGASFSGDSKFDNGTSLLYFRGQKIWEAI IRDLLPKGLASARKALLSGCSAGGLATFLHCDNFTKILPSNASVKCLSDAGFFLDEQD ISLNYTMRSFYHDLVALQGIEENLNPNCTMSINNQKLCFFPQYALKYITTPYFILNSA YDVFQFHHSLVPPSADLHGRWNRCKLNPAACNASQINVLQGLRQDMLTALYSFYKNSS RGGMFINSCFAHCQSESQDTWFAVDSPRIHNKTIAEAVGDWYFSRRVTKEIDCPYPCD TTCHNLIPSPQGLR" CDS complement(join(26668111..26668158,26668457..26668605, 26668784..26668889,26669004..26669081,26669165..26669221, 26669768..26669828,26669906..26670030,26670229..26670315, 26670584..26670663,26672408..26672537,26673599..26673681, 26673795..26673936)) /locus_tag="TCM_015185" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015186t1" /codon_start=1 /product="Pectinacetylesterase family protein isoform 2" /protein_id="EOY23211.1" /db_xref="Phytozome:GSVIVT01028921001" /db_xref="TAIR:AT5G23870.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DFR3" /translation="MNVKMMMNIEIMLSLLLSLAFAPWCIYSQEQLLVGMTLVRNAIA YGAVCLDGSLPAYHLHRGFGAGANNWILQFEGGGWCNDIPSCLERANTRRGSTRYMNK FEVFSGILSDNDSLNPDFYNWNRVKLRYCDGASFSGDSKFDNGTSLLYFRGQKIWEAI IRDLLPKGLASARKALLSGCSAGGLATFLHCDNFTKILPSNASVKCLSDAGFFLDEQD ISLNYTMRSFYHDLVALQGIEENLNPNCTMSINNQKLCFFPQYALKYITTPYFILNSA YDVFQFHHSLVPPSADLHGRWNRCKLNPAACNASQINVLQGLRQDMLTALYSFYKNSS RGGMFINSCFAHCQSESQDTWFAVDSPRIHNKRLLQKQLVIGTLAEE" gene complement(26675932..26679850) /locus_tag="TCM_015186" /note="dbxref CacaoGD:Thecc1EG015186" mRNA complement(join(26675932..26676638,26676730..26676840, 26677075..26677223,26677487..26677592,26677700..26677777, 26677868..26677924,26678167..26678227,26678315..26678436, 26678527..26678613,26678879..26678958,26679045..26679174, 26679389..26679471,26679678..26679850)) /locus_tag="TCM_015186" /product="Pectinacetylesterase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s13090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015185t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028921001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6066t1" CDS complement(join(26676615..26676638,26676730..26676840, 26677075..26677223,26677487..26677592,26677700..26677777, 26677868..26677924,26678167..26678227,26678315..26678436, 26678527..26678613,26678879..26678958,26679045..26679174, 26679389..26679471,26679678..26679810)) /locus_tag="TCM_015186" /note="paralog of Thecc1EG015185t1" /codon_start=1 /product="Pectinacetylesterase family protein" /protein_id="EOY23212.1" /db_xref="Phytozome:GSVIVT01028921001" /db_xref="TAIR:AT5G23870.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DFR3" /translation="MKLMNIAAVASILVLLACAPWCAYSQERLLVRMTLVRNAPALGA FCLDGSLPAYHLHRGFGNGANNWILFFEGGGWCGHREQCLDRAKTSYGSTNHMNKWAI FSGILSNNASLNPDFYNWNRVRLRYCDGASFAGDGKFANGTSLLYFRGQKIWEAIILD LLPQGLANAHMALLAGCSAGGLATFLHCDNFTRMLPNASVKCLSDAGFLLDERDVSLN HTVRSIFEDIVSLQGVEQNLDPKCTKSMNYPKLCFFPQYALKYITTPFFVLNSAYDVV QFHRFLVPPSADVEGKWKHCKHDPAACSADQIAILQGFRRDMLEALNFFLKDSHRGGT FINSCFAHCQSDAQESWFAVNSPRIHNKTIAEVVGDWYFTRREAKEIDCEYPCDTTCH NLMPVPQISLMIHK" gene 26682047..26689465 /locus_tag="TCM_015188" /note="dbxref CacaoGD:Thecc1EG015188" mRNA join(26682047..26682164,26682809..26682940, 26687337..26688276,26688704..26689110) /locus_tag="TCM_015188" /product="Signal peptide peptidase-like 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13255" /inference="similar to AA sequence:Phytozome:Glyma10g37870.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1314t9; alternateUTRof:Thecc1EG015188t2; inference alignment:Newbler:10:TSA:cgbaB_g02173t00001" mRNA join(26682164..26682375,26682809..26682940, 26687337..26688276,26688704..26689110) /locus_tag="TCM_015188" /product="Signal peptide peptidase-like 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13255" /inference="similar to AA sequence:Phytozome:Glyma10g37870.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1314t7; alternateUTRof:Thecc1EG015188t2; inference alignment:Newbler:10:TSA:cgbaB_g02173t00001" mRNA join(26682164..26682371,26682809..26682940, 26687337..26688276,26688704..26689110) /locus_tag="TCM_015188" /product="Signal peptide peptidase-like 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13255" /inference="similar to AA sequence:Phytozome:Glyma10g37870.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1314t3; inference alignment:Newbler:10:TSA:cgbaB_g02173t00001" mRNA join(26682164..26682276,26682809..26682940, 26687337..26688276,26688704..26689110) /locus_tag="TCM_015188" /product="Signal peptide peptidase-like 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13255" /inference="similar to AA sequence:Phytozome:Glyma10g37870.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1314t1; alternateUTRof:Thecc1EG015188t2; inference alignment:Newbler:10:TSA:cgbaB_g02173t00001" mRNA join(26682807..26682940,26687337..26688276, 26688704..26688904,26689136..26689465) /locus_tag="TCM_015188" /product="Signal peptide peptidase-like 1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13255" /inference="similar to AA sequence:Phytozome:POPTR_0012s13080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02173t00001; inference alignment:Newbler:10:TSA:cgbaB_g02173t00001" gene complement(26683474..26686073) /locus_tag="TCM_015190" /note="dbxref CacaoGD:Thecc1EG015190" mRNA complement(join(26683474..26684039,26684736..26684895, 26684982..26685162,26685652..26686073)) /locus_tag="TCM_015190" /product="Cleavage and polyadenylation specificity factor 100-like protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage" CDS complement(join(26683813..26684039,26684736..26684895, 26684982..26685162,26685652..26685842)) /locus_tag="TCM_015190" /codon_start=1 /product="Cleavage and polyadenylation specificity factor 100-like protein" /protein_id="EOY23218.1" /db_xref="TAIR:AT5G23880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LKF9" /translation="MPINHSLEKKIDYGWFCKVALRIHAVFSHPNTLHLGSPYAMKQF GPSNSIYSMELVYRLGLLTMYEMPPRTQTTSRETRGFMPQMSLRLDHMLPLLEAVGEV GLEVKLPSRPTVKVPMRGEPIPELVEFMRQWMQYPEEIMGFNSEDLDYQPYEEMDWRK VMVTLSDFMKLRPPAFNGGVDIVYLEDVTAQPLRSLRLNVTYLMYCFVSITIFIRKGE GTVNAPHLAGNLLDGTVYKITQAGEDVIYAVDFN" CDS join(26687479..26688276,26688704..26688904, 26689136..26689252) /locus_tag="TCM_015188" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Signal peptide peptidase-like 1 isoform 1" /protein_id="EOY23213.1" /db_xref="Phytozome:POPTR_0012s13080.1" /db_xref="TAIR:AT4G33410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z32" /translation="MESLWKLLYLLEPAPVTLMVTAVAVTFGSAFRALNYGKEMERNR DLSEASITLDRSQALMIPVMSSCSLLLMFYLFSSVSQLLTAFTAVASVSSLFFCLYPH VAYLKSQFGLADPYVSRCCSKSFTRIQGLLLLACFVTVAAWLVSGHWILNNLLGISIC IAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVA NSLSLPGLQLITKKLELPVKIVFPRNLLGGASPGGSTADFMMLGLGDMAIPAMLLALV LCFDHRKSRETVNLLDLHSSKGHKYIWYALPGYAIGLVTALAAGILTHSPQPALLYLV PSTLGPVIFISWLRKELVELWEGTMLNLNEKARQIEV" CDS join(26687479..26688276,26688704..26688961) /locus_tag="TCM_015188" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Signal peptide peptidase-like 1 isoform 2" /protein_id="EOY23214.1" /db_xref="Phytozome:Glyma10g37870.2" /db_xref="TAIR:AT4G33410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z32" /translation="MESLWKLLYLLEPAPVTLMVTAVAVTFGSAFRALNYGKEMERNR DLSEASITLDRSQALMIPVMSSCSLLLMFYLFSSVSQLLTAFTAVASVSSLFFCLYPH VAYLKSQFGLADPYVSRCCSKSFTRIQGLLLLACFVTVAAWLVSGHWILNNLLGISIC IAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVA NSLSLPGLQLITKKLELPVKIVFPRNLLGGASPGGSTADFMMLGLGDMAIPAMLLALV LCFDHRKSRETVNLLDLHSSKGHKYIWYALPGYAIGLVTALAAGILTHSPQPALLYLV FCYHSFIQVYLFSLYLA" CDS join(26687479..26688276,26688704..26688961) /locus_tag="TCM_015188" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Signal peptide peptidase-like 1 isoform 2" /protein_id="EOY23215.1" /db_xref="Phytozome:Glyma10g37870.2" /db_xref="TAIR:AT4G33410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z32" /translation="MESLWKLLYLLEPAPVTLMVTAVAVTFGSAFRALNYGKEMERNR DLSEASITLDRSQALMIPVMSSCSLLLMFYLFSSVSQLLTAFTAVASVSSLFFCLYPH VAYLKSQFGLADPYVSRCCSKSFTRIQGLLLLACFVTVAAWLVSGHWILNNLLGISIC IAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVA NSLSLPGLQLITKKLELPVKIVFPRNLLGGASPGGSTADFMMLGLGDMAIPAMLLALV LCFDHRKSRETVNLLDLHSSKGHKYIWYALPGYAIGLVTALAAGILTHSPQPALLYLV FCYHSFIQVYLFSLYLA" CDS join(26687479..26688276,26688704..26688961) /locus_tag="TCM_015188" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Signal peptide peptidase-like 1 isoform 2" /protein_id="EOY23216.1" /db_xref="Phytozome:Glyma10g37870.2" /db_xref="TAIR:AT4G33410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z32" /translation="MESLWKLLYLLEPAPVTLMVTAVAVTFGSAFRALNYGKEMERNR DLSEASITLDRSQALMIPVMSSCSLLLMFYLFSSVSQLLTAFTAVASVSSLFFCLYPH VAYLKSQFGLADPYVSRCCSKSFTRIQGLLLLACFVTVAAWLVSGHWILNNLLGISIC IAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVA NSLSLPGLQLITKKLELPVKIVFPRNLLGGASPGGSTADFMMLGLGDMAIPAMLLALV LCFDHRKSRETVNLLDLHSSKGHKYIWYALPGYAIGLVTALAAGILTHSPQPALLYLV FCYHSFIQVYLFSLYLA" CDS join(26687479..26688276,26688704..26688961) /locus_tag="TCM_015188" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Signal peptide peptidase-like 1 isoform 2" /protein_id="EOY23217.1" /db_xref="Phytozome:Glyma10g37870.2" /db_xref="TAIR:AT4G33410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z32" /translation="MESLWKLLYLLEPAPVTLMVTAVAVTFGSAFRALNYGKEMERNR DLSEASITLDRSQALMIPVMSSCSLLLMFYLFSSVSQLLTAFTAVASVSSLFFCLYPH VAYLKSQFGLADPYVSRCCSKSFTRIQGLLLLACFVTVAAWLVSGHWILNNLLGISIC IAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVA NSLSLPGLQLITKKLELPVKIVFPRNLLGGASPGGSTADFMMLGLGDMAIPAMLLALV LCFDHRKSRETVNLLDLHSSKGHKYIWYALPGYAIGLVTALAAGILTHSPQPALLYLV FCYHSFIQVYLFSLYLA" gene 26689900..26699093 /locus_tag="TCM_015191" /note="dbxref CacaoGD:Thecc1EG015191" mRNA join(26689900..26690168,26691930..26692151, 26692243..26692411,26692698..26692794,26693041..26693167, 26693261..26693382,26693519..26693613,26693714..26693865, 26694058..26694115,26694206..26694313,26694660..26694912, 26695645..26695829,26695962..26696054,26696667..26696765, 26697213..26697344,26697431..26697475,26697567..26697734, 26697862..26697936,26698062..26699093) /locus_tag="TCM_015191" /product="Cleavage and polyadenylation specificity factor 100 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13255" /inference="similar to AA sequence:ricco:29983.m003178" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04276t00001" mRNA join(26690143..26690168,26691930..26692151, 26692243..26692411,26692698..26692794,26693041..26693167, 26693261..26693382,26693519..26693613,26693714..26693865, 26694058..26694115,26694206..26694313,26694660..26694912, 26695645..26695829,26695962..26696044,26697691..26697734, 26697862..26697936,26698062..26698515) /locus_tag="TCM_015191" /product="Cleavage and polyadenylation specificity factor 100 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13255" /inference="similar to AA sequence:ricco:29983.m003178" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1839t1; inference alignment:Newbler:10:TSA:cgbaB_g04276t00001" mobile_element complement(26691479..26691571) /note="source:scaffold_9_CACTA_0942 2208 2312" /mobile_element_type="transposon:TIR/CACTA" CDS join(26692003..26692151,26692243..26692411, 26692698..26692794,26693041..26693167,26693261..26693382, 26693519..26693613,26693714..26693865,26694058..26694115, 26694206..26694313,26694660..26694912,26695645..26695829, 26695962..26696054,26696667..26696765,26697213..26697344, 26697431..26697475,26697567..26697734,26697862..26697936, 26698062..26698163) /locus_tag="TCM_015191" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29983.m003178" /codon_start=1 /product="Cleavage and polyadenylation specificity factor 100 isoform 1" /protein_id="EOY23219.1" /db_xref="TAIR:AT5G23880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LKF9" /translation="MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDPSL LQPLSRVAPTIDAVLLSHPDTLHLGALPYAMKQFGLSAPVYSTEPVFRLGLLTMYDQY LSRKQVSEFELFTLDDIDSAFQNVTRLTYSQNYHLSGKGEGIVIAPHVAGHLLGGTVW KITKDGEDVIYAVDFNRRKEKHLNGTVLESFVRPAVLITDAYNALNNQPPKQQRERDR DFVDTISRTLEAGGNVLLPVDTTGRVLELLLVLEEHWAMKSLNYPIFFLTYVSSSTID YVKSFLEWMSDAIAKSFETSRDNAFLLRHVTLLISKNELDKVPDGPKVVLASMASLEA GFSHDIFVEWAADVKNLVLFTERGQFGTLARMLQADPPPKAVKVMMSRRVPLVGEELI AHEEEQNRLKKEEALKASLIKEEESKASIVPDISSSDPMVIDTNNKHSSLDGLGQHGS GYRDILIDGFVPPSTSVAPMFPFYENASDWDDFGEVINPDDYVIKDEDMDQAAMHVGG DMDGKVDEASASLIVDTTPSKVISNELTVQVKSSLIYMDYEGRSDGRSVKSILAHVAP LKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNV LFKKLGDYEIAWVDAEVGKTENEMLSLLPLSTPAPPHKSVVVGDLKLADFKQFLASKG VKVEFAGGALRCGEYVTLRKVGFASQKGGGSGTQQIIIEGPLCEDYYKIRDYLYSQFY LL" CDS join(26692003..26692151,26692243..26692411, 26692698..26692794,26693041..26693167,26693261..26693382, 26693519..26693613,26693714..26693865,26694058..26694115, 26694206..26694313,26694660..26694912,26695645..26695829, 26695962..26696044,26697691..26697721) /locus_tag="TCM_015191" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29983.m003178" /codon_start=1 /product="Cleavage and polyadenylation specificity factor 100 isoform 2" /protein_id="EOY23220.1" /db_xref="TAIR:AT5G23880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LKF9" /translation="MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDPSL LQPLSRVAPTIDAVLLSHPDTLHLGALPYAMKQFGLSAPVYSTEPVFRLGLLTMYDQY LSRKQVSEFELFTLDDIDSAFQNVTRLTYSQNYHLSGKGEGIVIAPHVAGHLLGGTVW KITKDGEDVIYAVDFNRRKEKHLNGTVLESFVRPAVLITDAYNALNNQPPKQQRERDR DFVDTISRTLEAGGNVLLPVDTTGRVLELLLVLEEHWAMKSLNYPIFFLTYVSSSTID YVKSFLEWMSDAIAKSFETSRDNAFLLRHVTLLISKNELDKVPDGPKVVLASMASLEA GFSHDIFVEWAADVKNLVLFTERGQFGTLARMLQADPPPKAVKVMMSRRVPLVGEELI AHEEEQNRLKKEEALKASLIKEEESKASIVPDISSSDPMVIDTNNKHSSLDGLGQHGS GYRDILIDGFVPPSTSVAPMFPFYENASDWDDFGEVINPDDYVIKDEDMDQAAMHVGG DMDGKVDEASASLIVDTTPSKVISKTGRFQAVSC" gene 26698762..26705128 /locus_tag="TCM_015192" /note="dbxref CacaoGD:Thecc1EG015192" mRNA join(26698762..26699570,26699900..26699986, 26700155..26700253,26701085..26701173,26701275..26701363, 26701489..26701592,26701688..26701778,26702164..26702239, 26702341..26702455,26702546..26703077,26703820..26704674) /locus_tag="TCM_015192" /product="Chloroplast thylakoid membrane, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g30160.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12970.1" /inference="similar to AA sequence:ricco:30169.m006251" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc21t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7133t3" mRNA join(26698989..26699570,26699900..26699986, 26700155..26700244,26701076..26701173,26701275..26701363, 26701489..26701592,26701688..26701778,26702164..26702239, 26702341..26702455,26702546..26703077,26703820..26704674) /locus_tag="TCM_015192" /product="Chloroplast thylakoid membrane, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g30160.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12970.1" /inference="similar to AA sequence:ricco:30169.m006251" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc21t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7133t3" mRNA join(26699170..26699570,26699900..26699986, 26700155..26701173,26701275..26701363,26701489..26701592, 26701688..26701778,26702164..26702239,26702341..26702455, 26702546..26703077,26703820..26705128) /locus_tag="TCM_015192" /product="Chloroplast thylakoid membrane, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g30160.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s12970.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7133t3" CDS join(26699270..26699570,26699900..26699986, 26700155..26701173,26701275..26701363,26701489..26701592, 26701688..26701778,26702164..26702239,26702341..26702455, 26702546..26703077,26703820..26704312) /locus_tag="TCM_015192" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Chloroplast thylakoid membrane, putative isoform 1" /protein_id="EOY23221.1" /db_xref="Phytozome:POPTR_0015s12970.2" /db_xref="TAIR:AT5G23890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6M7" /translation="MASTTATWSPSSPQLRLALRCRNCKESGVVFVRARTGKLDCSSV RLLSVSRSRRKGLERRRNGALWIVSDSTAGSDTFSGWSDSDTLEDSVDSKSNGWFGGI MGAGSAGLVLVAGLSFAAMSLSNRSTSRPKQQLQPLTTQQEVSLASDNESDKIEENES ETGIHKDLSSPSEFNDTSTDNKLDNDNGTYLVDSYTSNGNSATNTVPNQEDLQTVSAL DGMSVGQDTSPISPKLPESDVVGGFVVASSLRESNSNFDINSPEATSEIEDKLINVRE TIDTNLSDPINLDNDLNEVKLGSEGKENYDISVDSTSSSNSSNEPVIISISDSSELEP ILEPQAVPRDNLDTVESSSTEENLEISKMSQVSAEIKNSSLEVNNLNESESSETTSVS APAHPLTNEQSKIDYNEINDSKPVFESPTPRSSFSPAGIPAPSVVSAALQVHPGKVLV PAVVDQVQGQALAALQVLKVIEADVQPSDLCTRREYARWLVSASSALSRNTASKVYPA MYIENVTELAFDDITPDDPDFSSIQGLAEAGLISSKFSNQDLLNDDLGPFYFFPESPL SRQDLVSWKMALEKRQLPEADRKILYQLSGFIDINKINPDAWPALMADLSSGEQGIIA LAFGCVRLFQPDKPVTKAQAAVALATGEASDLVSEEFARIEAESMAENAVSAHTALVA QVEKDVNASFEKELLMEREKIDAVEKMAEEAKRELERLRSQREEENIALMKDRAAIDS EMEVLSRLRREVEEQLESLMRNKVEIQYEKERISKLLKETENESQEIVRLQHELEVER KALSMARAWAEDEARRASEQAKALEEARDRWERHGIKVVVDNDLREESVARSTWVNVG KQVAVEGTISRGEILVGKLKVLASQVKGKSREFINKIVERVQHLIAVLKEWTSTAGAK AEELTDKAILKASGSVQELQQSTAGFSSALKEGAKRVAGDCREGVEKLTQRFRT" CDS join(26699270..26699570,26699900..26699986, 26700155..26700253,26701085..26701173,26701275..26701363, 26701489..26701592,26701688..26701778,26702164..26702239, 26702341..26702455,26702546..26703077,26703820..26704312) /locus_tag="TCM_015192" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006251" /codon_start=1 /product="Chloroplast thylakoid membrane, putative isoform 2" /protein_id="EOY23222.1" /translation="MASTTATWSPSSPQLRLALRCRNCKESGVVFVRARTGKLDCSSV RLLSVSRSRRKGLERRRNGALWIVSDSTAGSDTFSGWSDSDTLEDSVDSKSNGWFGGI MGAGSAGLVLVAGLSFAAMSLSNRSTSRPKQQLQPLTTQQEVSLASDNESDKIEENES ETALQVHPGKVLVPAVVDQVQGQALAALQVLKVIEADVQPSDLCTRREYARWLVSASS ALSRNTASKVYPAMYIENVTELAFDDITPDDPDFSSIQGLAEAGLISSKFSNQDLLND DLGPFYFFPESPLSRQDLVSWKMALEKRQLPEADRKILYQLSGFIDINKINPDAWPAL MADLSSGEQGIIALAFGCVRLFQPDKPVTKAQAAVALATGEASDLVSEEFARIEAESM AENAVSAHTALVAQVEKDVNASFEKELLMEREKIDAVEKMAEEAKRELERLRSQREEE NIALMKDRAAIDSEMEVLSRLRREVEEQLESLMRNKVEIQYEKERISKLLKETENESQ EIVRLQHELEVERKALSMARAWAEDEARRASEQAKALEEARDRWERHGIKVVVDNDLR EESVARSTWVNVGKQVAVEGTISRGEILVGKLKVLASQVKGKSREFINKIVERVQHLI AVLKEWTSTAGAKAEELTDKAILKASGSVQELQQSTAGFSSALKEGAKRVAGDCREGV EKLTQRFRT" CDS join(26699270..26699570,26699900..26699986, 26700155..26700244,26701076..26701173,26701275..26701363, 26701489..26701592,26701688..26701778,26702164..26702239, 26702341..26702455,26702546..26703077,26703820..26704312) /locus_tag="TCM_015192" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30169.m006251" /codon_start=1 /product="Chloroplast thylakoid membrane, putative isoform 4" /protein_id="EOY23224.1" /translation="MASTTATWSPSSPQLRLALRCRNCKESGVVFVRARTGKLDCSSV RLLSVSRSRRKGLERRRNGALWIVSDSTAGSDTFSGWSDSDTLEDSVDSKSNGWFGGI MGAGSAGLVLVAGLSFAAMSLSNRSTSRPKQQLQPLTTQQEVSLASDNESDKIEENEI SAALQVHPGKVLVPAVVDQVQGQALAALQVLKVIEADVQPSDLCTRREYARWLVSASS ALSRNTASKVYPAMYIENVTELAFDDITPDDPDFSSIQGLAEAGLISSKFSNQDLLND DLGPFYFFPESPLSRQDLVSWKMALEKRQLPEADRKILYQLSGFIDINKINPDAWPAL MADLSSGEQGIIALAFGCVRLFQPDKPVTKAQAAVALATGEASDLVSEEFARIEAESM AENAVSAHTALVAQVEKDVNASFEKELLMEREKIDAVEKMAEEAKRELERLRSQREEE NIALMKDRAAIDSEMEVLSRLRREVEEQLESLMRNKVEIQYEKERISKLLKETENESQ EIVRLQHELEVERKALSMARAWAEDEARRASEQAKALEEARDRWERHGIKVVVDNDLR EESVARSTWVNVGKQVAVEGTISRGEILVGKLKVLASQVKGKSREFINKIVERVQHLI AVLKEWTSTAGAKAEELTDKAILKASGSVQELQQSTAGFSSALKEGAKRVAGDCREGV EKLTQRFRT" mRNA join(26699541..26699570,26699900..26699986, 26700155..26700224,26700343..26701173,26701275..26701363, 26701489..26701592,26701688..26701778,26702164..26702239, 26702341..26702455,26702546..26703077,26703820..26704674) /locus_tag="TCM_015192" /product="Chloroplast thylakoid membrane, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g30160.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12970.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s12970.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc21t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7133t3" CDS join(26700427..26701173,26701275..26701363, 26701489..26701592,26701688..26701778,26702164..26702239, 26702341..26702455,26702546..26703077,26703820..26704312) /locus_tag="TCM_015192" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Chloroplast thylakoid membrane, putative isoform 3" /protein_id="EOY23223.1" /db_xref="Phytozome:POPTR_0015s12970.2" /db_xref="TAIR:AT5G23890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6M7" /translation="MSVGQDTSPISPKLPESDVVGGFVVASSLRESNSNFDINSPEAT SEIEDKLINVRETIDTNLSDPINLDNDLNEVKLGSEGKENYDISVDSTSSSNSSNEPV IISISDSSELEPILEPQAVPRDNLDTVESSSTEENLEISKMSQVSAEIKNSSLEVNNL NESESSETTSVSAPAHPLTNEQSKIDYNEINDSKPVFESPTPRSSFSPAGIPAPSVVS AALQVHPGKVLVPAVVDQVQGQALAALQVLKVIEADVQPSDLCTRREYARWLVSASSA LSRNTASKVYPAMYIENVTELAFDDITPDDPDFSSIQGLAEAGLISSKFSNQDLLNDD LGPFYFFPESPLSRQDLVSWKMALEKRQLPEADRKILYQLSGFIDINKINPDAWPALM ADLSSGEQGIIALAFGCVRLFQPDKPVTKAQAAVALATGEASDLVSEEFARIEAESMA ENAVSAHTALVAQVEKDVNASFEKELLMEREKIDAVEKMAEEAKRELERLRSQREEEN IALMKDRAAIDSEMEVLSRLRREVEEQLESLMRNKVEIQYEKERISKLLKETENESQE IVRLQHELEVERKALSMARAWAEDEARRASEQAKALEEARDRWERHGIKVVVDNDLRE ESVARSTWVNVGKQVAVEGTISRGEILVGKLKVLASQVKGKSREFINKIVERVQHLIA VLKEWTSTAGAKAEELTDKAILKASGSVQELQQSTAGFSSALKEGAKRVAGDCREGVE KLTQRFRT" gene complement(26705187..26706700) /locus_tag="TCM_015193" /note="dbxref CacaoGD:Thecc1EG015193" mRNA complement(join(26705187..26705324,26705428..26705627, 26705875..26705978,26706661..26706700)) /locus_tag="TCM_015193" /product="60S ribosomal protein L36" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028917001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005339t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07390.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12860t00001" CDS complement(join(26705291..26705324,26705428..26705627, 26705875..26705976)) /locus_tag="TCM_015193" /note="paralog of Thecc1EG005339t1" /codon_start=1 /product="60S ribosomal protein L36" /protein_id="EOY23225.1" /db_xref="Phytozome:POPTR_0011s07390.1" /db_xref="TAIR:AT3G53740.4" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CV06" /translation="MATKQPNSGLFVGLNKGHIVTKKELAPRPSNRKGKTSKRVHFVK NLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRA HPGGGEKKK" mobile_element complement(26706971..26707244) /note="source:scaffold_9_CACTA_0932 3320 3584" /mobile_element_type="transposon:TIR/CACTA" gene 26709825..26714339 /locus_tag="TCM_015194" /note="dbxref CacaoGD:Thecc1EG015194" mRNA join(26709825..26711345,26712590..26712648, 26712901..26713029,26713396..26713559,26713773..26714339) /locus_tag="TCM_015194" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006249" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005337t1" /inference="similar to AA sequence:Phytozome:Glyma10g37820.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b014680t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7153t2" mRNA join(26710088..26711345,26712590..26712648, 26712901..26713029,26713396..26713531,26713773..26714140) /locus_tag="TCM_015194" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006249" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005337t1" /inference="similar to AA sequence:ricco:30169.m006249" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7153t2" CDS join(26710641..26711345,26712590..26712648, 26712901..26713029,26713396..26713531,26713773..26714105) /locus_tag="TCM_015194" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006249; paralog of Thecc1EG005337t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY23226.1" /db_xref="TAIR:AT3G49050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T101" /translation="MSIICGLPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEE FEPVPRLCRYILAVYEEDLWHPLWEPPGGYGINPDWLIRRKTYEDTQGRAPSYILYLD HDHADIVLAIRGLNLAKESDYQVLLDNKLGKKKFDGGYVHNGLLKAAGWVLDAECEIL KELVEKYPNYTLTFAGHSLGSGVAAMLALVVVQHQDKLGNIDRRRIRCYAIAPARCMS LNLAVRYADVINSVVLQDDFLPRTATPLEDIFKSLFCLPCLLCLRCMRDTCIPEEKML KDPRRLYAPGRLYHIVERKPFRLGRFPPVVRTAVPVDGRFEHIVLSCNATSDHAIVWI EREAQRAMDLMLEKDRIMEIPAKQRMERQETLAREHSQEYKAALQRAVTLSVPHAYSP SQYGTFEESEDGENSHKSSGESSVGSSGKSKNKESWNELIERLFDKDESGHMVLKKSH RDD" CDS join(26710641..26711345,26712590..26712648, 26712901..26713029,26713396..26713559,26713773..26713792) /locus_tag="TCM_015194" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005337t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY23227.1" /db_xref="Phytozome:Glyma10g37820.1" /db_xref="TAIR:AT3G49050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T101" /translation="MSIICGLPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEE FEPVPRLCRYILAVYEEDLWHPLWEPPGGYGINPDWLIRRKTYEDTQGRAPSYILYLD HDHADIVLAIRGLNLAKESDYQVLLDNKLGKKKFDGGYVHNGLLKAAGWVLDAECEIL KELVEKYPNYTLTFAGHSLGSGVAAMLALVVVQHQDKLGNIDRRRIRCYAIAPARCMS LNLAVRYADVINSVVLQDDFLPRTATPLEDIFKSLFCLPCLLCLRCMRDTCIPEEKML KDPRRLYAPGRLYHIVERKPFRLGRFPPVVRTAVPVDGRFEHIVLSCNATSDHAIVWI EREAQRAMDVSSKLLYFHVNAGER" gene 26715301..26718265 /locus_tag="TCM_015195" /note="dbxref CacaoGD:Thecc1EG015195" mRNA join(26715301..26715572,26715708..26715739, 26716017..26716230,26716474..26716531,26716610..26716711, 26717236..26717293,26717394..26717566,26717660..26718265) /locus_tag="TCM_015195" /product="Oxoglutarate/iron-dependent oxygenase, putative" /inference="alignment:exonerate- protein:2:ricco:30169.m006248" /inference="similar to AA sequence:Phytozome:POPTR_0012s13040.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09613t00001" CDS join(26715502..26715572,26715708..26715739, 26716017..26716230,26716474..26716531,26716610..26716711, 26717236..26717293,26717394..26717566,26717660..26718013) /locus_tag="TCM_015195" /codon_start=1 /product="Oxoglutarate/iron-dependent oxygenase, putative" /protein_id="EOY23228.1" /db_xref="Phytozome:POPTR_0012s13040.1" /db_xref="TAIR:AT4G25600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I479" /translation="MALLHSIFLLLLFACSFSNISAERIDELHGVLRLGNVQSLQPLE VRLLYDNFFVYNLFLLVLFCMSSRKELRDEEVHEESVIQSRLSAQSNTIDPSRVMQLL WQPRVFLYNGFLSDEECDHLISLGHGAKEGILGINDDRVNVGTNRQLTSSEPLLNTED KVLAMIEERISTWTFLPRDNGEPLQVRRHGLEGTEQNLDYFGNISTLALSEPLMATLI LYLSNVTRGGEILFPHAEPRSKIWSDCAKSSNIVKPVKGNAILFFTTHLNASPDGSSS HARCPVLEGEMWFATKFFCLRAVKGDKVSFDSDGNECVDEDANCPQWAALGECQRNPV FMVGSPDYYGTCRKTCNAC" gene complement(26718191..26719090) /locus_tag="TCM_015196" /note="dbxref CacaoGD:Thecc1EG015196" mRNA complement(26718191..26719090) /locus_tag="TCM_015196" /product="Ribosomal RNA small subunit methyltransferase E" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage" CDS complement(26718645..26718923) /locus_tag="TCM_015196" /codon_start=1 /product="Ribosomal RNA small subunit methyltransferase E" /protein_id="EOY23229.1" /translation="MLFWYFFRFFSFRLHSFLHVQTRAFQKMDEKREINGVKKIQSPC DVEALKKCLEENKGDYVKCQYQIEAFKSSCSLKKPDPSVDSANSTRRI" gene 26718989..26724033 /locus_tag="TCM_015197" /note="dbxref CacaoGD:Thecc1EG015197" mRNA join(26718989..26719454,26719555..26719720, 26719825..26720028,26720125..26720311,26720418..26720623, 26720720..26720964,26721074..26721128,26721338..26721391, 26721558..26721605,26721844..26721933,26722009..26722093, 26722181..26722473,26722557..26722603,26723031..26723052, 26723127..26723195,26723347..26723385,26723553..26724033) /locus_tag="TCM_015197" /product="ATP binding microtubule motor family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g30120.1" /inference="similar to AA sequence:Phytozome:GSVIVT01028911001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7176t3" mRNA join(26719196..26719454,26719555..26719720, 26719825..26720028,26720125..26720311,26720418..26720623, 26720720..26720964,26721074..26721128,26721338..26721391, 26721558..26721605,26721844..26721933,26722007..26722093, 26722181..26722603,26723031..26723052,26723127..26723195, 26723347..26723371) /locus_tag="TCM_015197" /product="ATP binding microtubule motor family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g30120.1" /inference="similar to AA sequence:Phytozome:GSVIVT01028911001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7176t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7176t3" CDS join(26719285..26719454,26719555..26719720, 26719825..26720028,26720125..26720311,26720418..26720623, 26720720..26720964,26721074..26721128,26721338..26721391, 26721558..26721605,26721844..26721933,26722009..26722093, 26722181..26722473,26722557..26722603,26723031..26723052, 26723127..26723195,26723347..26723385,26723553..26723597) /locus_tag="TCM_015197" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ATP binding microtubule motor family protein, putative isoform 1" /protein_id="EOY23230.1" /db_xref="Phytozome:GSVIVT01028911001" /db_xref="TAIR:AT5G23910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CV00" /translation="MGPNQGRKARVIAKIKGFTDLKTESTDEASGKWISVHKPKGDDS ESVTISFGDQSTSRKESYELDYCYDRNEGNALVFSREVKPLIEDVFKGHNATVIAYGA RSSGKTYVIQGLEEEPGLAVLSMTEILSMAEKTGKLINISCYEISKDHAYDLLDPERH EVLVWEDVARGKIQLKGLSQVPVKSIQEFQKLYLSGHNSQKQPQKILAEPHHRSHKGL IIHVFHSNKSDALPLGKMNFVDLAGYEDARRKSTDGVNLLENNKINKSIYALQNVVYA LNANESHVPYRESKLTRMLRDSLGGTNKILMVTCLNSSFCQDSLYMASLASRSCKGIN RVIPDSTKKTKSMVRPTVLSSYKSRIPGSNSATVTKQIGTRVRFPENKANVKASAIKG RKLFHEACHSTKSKKASQEENLSLEIVSAIEHNIQEEEKYCSGILEAIGPPVEEPSPL GALSAEETDVPVKASNTQETKLPDEVVVANEHNHDEAIPNIDSNAKALSFVGADQAMD KENNFLLVNENESPPISARLQELSNNLKLLFSSTPSCVEIPPKTDVSLYGQVSTEILE PKTPEPSLPVNDKWEIANTNCSPWKALSAHSSRMKNSLVDEYIRFLNTASKEDLKRLK GIGEKRATYILELREESPEPFKNLDDLKEIGLSAKQIKGMMRKEIGGLFN" CDS join(26719285..26719454,26719555..26719720, 26719825..26720028,26720125..26720311,26720418..26720623, 26720720..26720964,26721074..26721128,26721338..26721391, 26721558..26721605,26721844..26721933,26722007..26722093, 26722181..26722276) /locus_tag="TCM_015197" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ATP binding microtubule motor family protein, putative isoform 2" /protein_id="EOY23231.1" /db_xref="Phytozome:GSVIVT01028911001" /db_xref="TAIR:AT5G23910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GCU2" /translation="MGPNQGRKARVIAKIKGFTDLKTESTDEASGKWISVHKPKGDDS ESVTISFGDQSTSRKESYELDYCYDRNEGNALVFSREVKPLIEDVFKGHNATVIAYGA RSSGKTYVIQGLEEEPGLAVLSMTEILSMAEKTGKLINISCYEISKDHAYDLLDPERH EVLVWEDVARGKIQLKGLSQVPVKSIQEFQKLYLSGHNSQKQPQKILAEPHHRSHKGL IIHVFHSNKSDALPLGKMNFVDLAGYEDARRKSTDGVNLLENNKINKSIYALQNVVYA LNANESHVPYRESKLTRMLRDSLGGTNKILMVTCLNSSFCQDSLYMASLASRSCKGIN RVIPDSTKKTKSMVRPTVLSSYKSRIPGSNSATVTKQIGTRVRFPENKANVKASAIKG RKLFHEACHSTKSKKASQEENLSLEIVSAIEHNIQEEEKYCSGILEAIGPPVEEPSPL GALSAEETDVPVKASNTQETKLPDERLLWLTSIITTKLFQILTAMQKHFLLLEQIKPW IRRTTFYLSMRMNHHQLVHDYRSCLII" gene complement(26724085..26727107) /locus_tag="TCM_015198" /note="dbxref CacaoGD:Thecc1EG015198" mRNA complement(join(26724085..26724683,26725037..26725153, 26725260..26725371,26725563..26725639,26726021..26727107)) /locus_tag="TCM_015198" /product="ATP binding protein, putative" /inference="alignment:exonerate- protein:2:ricco:30169.m006246" /inference="similar to AA sequence:ricco:30169.m006246" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7137t2" CDS complement(join(26724330..26724683,26725037..26725153, 26725260..26725371,26725563..26725639,26726021..26726989)) /locus_tag="TCM_015198" /note="dbxref ricco:30169.m006246" /codon_start=1 /product="ATP binding protein, putative" /protein_id="EOY23232.1" /db_xref="TAIR:AT3G49055.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIW6" /translation="METIADPSSDIPVNGLDSSIVPLNSDHDLLAELESVRESYHALQ SKSSSMEENLGLLQHQRDEAISESTKLTGKVHELSLERDFLRHQIEEFEVTLKENEEE FAKKIDEESKAKLELEKELEVTGGRIEQLQSEMKVRNEVFAKNLDSIRSVKDNLVKLI EILNDEKEVIENFDSESEKLELEEEEMTIFSREITMVLKLASEANSKVNEYTEARKKE KRELENSVVSLTEENRDINSLLRVALVEKEAVEKSLNKLKGNNEQKRVALLQIAERGL QRVGFGFMMGSGSNEQALESSGASTTTASTTGSKSDSSECEEEVVSLASTVERIMKNL RLEISQLRRSLEESRSDTERLQSLTEKQAQKLEENTLYIRELEERERVLAQSAEELLM EIKETEAEVARWREACELEVEAGKKEVEERDKVVVILKQELEKTKAALEISNGKLKLK EELAAAAMAAQAAAERSLQLADSRAAGLRDRIEELTKQLEEAESKERSRRKVRHICWP WRALKMNITNNTNNRVQDVKRMLPEMQALLHHTM" mobile_element 26727390..26727873 /note="source:CACAO_Mariner_E220_scaffold_9 14744 15241" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 26728702..26737464 /locus_tag="TCM_015199" /note="dbxref CacaoGD:Thecc1EG015199" mRNA join(26728702..26729434,26730214..26730335, 26730565..26730686,26730944..26731048,26731411..26731535, 26731666..26731793,26732177..26732326,26734484..26735011, 26735609..26736367,26736765..26737464) /locus_tag="TCM_015199" /product="U-box domain-containing protein kinase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s13020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046697t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028909001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7141t2" CDS join(26729251..26729434,26730214..26730335, 26730565..26730686,26730944..26731048,26731411..26731535, 26731666..26731793,26732177..26732326,26734484..26735011, 26735609..26736367,26736765..26736947) /locus_tag="TCM_015199" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046697t1" /codon_start=1 /product="U-box domain-containing protein kinase family protein, putative isoform 1" /protein_id="EOY23233.1" /db_xref="Phytozome:GSVIVT01028909001" /db_xref="TAIR:AT3G49060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CUZ8" /translation="MGSLVEEIEGEREYDVEETIFVAVGKNVEKSKTTLFWAVQNFPG KRICVLHVQRPTHVLALTQGKLARNKLKQHAVEAFQKLERPKMHERLEEYMLILDHAG VQADTVWIEMDSVEKGIVEIIVRHSVRWLVMGAAADKYYSKKLLQPKSKKAIFVCQMA PVSCHIWFACKGYLIFTRIGGKDRSNIEIATLSPPLDSPVRTVQLEFLSSESVHRVRS LDVEEDTDVIKGKLRPVSWCSEHLNLSSSEVVDTYGSIPLQRDEEEEYQGQASNVTDQ LLELSIMDDHNLKQNMFAETVKQWKEENDAMEAKCKAKALECLCVKEMSRRKEMEELL EREKQEVQKMKDQHDELMKELQVVKDQTKVLESQIADSQCTVEELDEKFFSAVELLIS FKKKRDDMQIEHGNAIRVLKDLRKLVHGENASFPGTQILEFSFMEINNATRNFDPSWK IGEGKYGSVYKGLLRHVHVAIKMLPSYGCQSLLEFENEVEILSRVRHPNLIMIIGTCP ESRSLVFEYLRNGSLEDRLACKNNTPPLPWQTRTRIASEICSALIFLHSNKPCIPHGN LKPSKVLLDANFVSKLSDSGIYRLIPQGERTDISASSCTKANPEVASVYMDPEYLENG KVTRESDVYSLGMLLLRLLTGRPALGLLKDVKCAIETENFNMVLDWSAGDWPLAEAQL LAHLALRCCEKLPLNRLDLVSEIWSVLGPMSESCINSASCLGAKERCRIPSHFVCPIF QEVMEDPLIAADGFTYEADAIRGWLESGHDRSPMTNLKLEHCSLVPNYALHQAIQEWQ QQW" mRNA join(26730311..26730335,26730571..26730686, 26730944..26731048,26731411..26731535,26731666..26731793, 26732177..26732326,26734484..26735011,26735609..26736367, 26736765..26737444) /locus_tag="TCM_015199" /product="Receptor protein kinase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s13020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046697t1" /inference="similar to AA sequence:ricco:30169.m006245" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc573t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7141t2" CDS join(26730312..26730335,26730571..26730686, 26730944..26731048,26731411..26731535,26731666..26731793, 26732177..26732326,26734484..26735011,26735609..26736367, 26736765..26736947) /locus_tag="TCM_015199" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006245; paralog of Thecc1EG046697t1" /codon_start=1 /product="Receptor protein kinase, putative isoform 2" /protein_id="EOY23234.1" /db_xref="TAIR:AT3G49060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIW5" /translation="MLILDHAGADTVWIEMDSVEKGIVEIIVRHSVRWLVMGAAADKY YSKKLLQPKSKKAIFVCQMAPVSCHIWFACKGYLIFTRIGGKDRSNIEIATLSPPLDS PVRTVQLEFLSSESVHRVRSLDVEEDTDVIKGKLRPVSWCSEHLNLSSSEVVDTYGSI PLQRDEEEEYQGQASNVTDQLLELSIMDDHNLKQNMFAETVKQWKEENDAMEAKCKAK ALECLCVKEMSRRKEMEELLEREKQEVQKMKDQHDELMKELQVVKDQTKVLESQIADS QCTVEELDEKFFSAVELLISFKKKRDDMQIEHGNAIRVLKDLRKLVHGENASFPGTQI LEFSFMEINNATRNFDPSWKIGEGKYGSVYKGLLRHVHVAIKMLPSYGCQSLLEFENE VEILSRVRHPNLIMIIGTCPESRSLVFEYLRNGSLEDRLACKNNTPPLPWQTRTRIAS EICSALIFLHSNKPCIPHGNLKPSKVLLDANFVSKLSDSGIYRLIPQGERTDISASSC TKANPEVASVYMDPEYLENGKVTRESDVYSLGMLLLRLLTGRPALGLLKDVKCAIETE NFNMVLDWSAGDWPLAEAQLLAHLALRCCEKLPLNRLDLVSEIWSVLGPMSESCINSA SCLGAKERCRIPSHFVCPIFQEVMEDPLIAADGFTYEADAIRGWLESGHDRSPMTNLK LEHCSLVPNYALHQAIQEWQQQW" mobile_element 26732568..26732767 /note="source:CACAO_PIF_E119_scaffold_3 1748 1946" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(26732844..26733870) /note="source:CACAO_hAT_E2538_scaffold_5 1 1025" /mobile_element_type="transposon:TIR/hAT" mobile_element 26733871..26734079 /note="source:CACAO_PIF_E119_scaffold_3 2063 2273" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 26737825..26744097 /locus_tag="TCM_015200" /note="dbxref CacaoGD:Thecc1EG015200" mRNA join(26737825..26738338,26739657..26739918, 26740015..26740151,26740371..26740415,26740535..26740588, 26740838..26740942,26741044..26741247,26741473..26741558, 26742262..26743319,26743419..26744097) /locus_tag="TCM_015200" /product="C2H2-like zinc finger protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028908001" /inference="similar to AA sequence:Phytozome:GSVIVT01028908001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7159t3" CDS join(26739738..26739918,26740015..26740151, 26740371..26740415,26740535..26740588,26740838..26740942, 26741044..26741247,26741473..26741558,26742262..26743319, 26743419..26743642) /locus_tag="TCM_015200" /codon_start=1 /product="C2H2-like zinc finger protein, putative" /protein_id="EOY23235.1" /db_xref="Phytozome:GSVIVT01028908001" /db_xref="TAIR:AT4G25610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CUZ7" /translation="MSVGKLKAASAADLMKSEEPNDSLDTFIRQAIGKEPFLSLSKPG DTPVQWIQLLHALDQQDLPGWPLLTPLKVQMQKCDKCSREFCSPINYRRHIRVHHRLK KLDKDSAKNRGLLAAFWDKLSEDEAKEVISFKDVSLEEVPGPSVIKSLTTLVKRPGFS ALPQVCLRAGSALLDIVQTRPSRFPISSQELFSILDDASEKTFLCGAAVSMQKYIFDG EAGKIGLETKNLVSSTSFLVEQKLVKAWLADKDAEALRCQKLLVEEEEAAQKRQVELL ERRKQKKLRQKEQKAKDQRHGEMEVVKQDMDDSLGVNIPAETSSSLAACDFDRQNPVT LTDQVLLSMERIYFSNPQEDVDYKMQMGFSNGYCDPGTSQNIERRMEQAGGHRHIVVA RWKTPPKSQRGVPTGLHASQNSIGFKFGGINKHGTNRERVAAMGNGNKMWSRKPKAVN DGESLKSRAEKQAANQLDQNQLDQNKNHEVLIGSISVTLGNCSHHEGNNLTEAHDRCL ADYQIPKKNNVHEKSSKLDPVQGVTNRSTIKFWRPVSRHESKSSLQVQNGIREFEVEV IAEKDGDQTSSNESCLRSWVTDSSNGVVSMNTSTLEESLQPGSLQFDSHAAKVFLAGR WKEAFAGEHLTLVLSPNLELPGCSVVEIDSSEKWMVRAGPFEASTGGAAKGKFRTKPE KGAKIRYIPKQRSAI" gene 26745089..26748580 /locus_tag="TCM_015201" /note="dbxref CacaoGD:Thecc1EG015201" mRNA join(26745089..26746127,26746612..26746688, 26747624..26748580) /locus_tag="TCM_015201" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12900.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s12900.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2636t2" CDS join(26745396..26746127,26746612..26746688, 26747624..26747879) /locus_tag="TCM_015201" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23236.1" /db_xref="Phytozome:POPTR_0015s12900.1" /db_xref="TAIR:AT5G52420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94A91" /translation="MSGGVGPTCNDISLPNEEVQGHESSRSDPLKPVPSPAHLSRTRF LTLRQLNCLAVMIITAASAMVSPGDIAFVFFSVIYMYLLLKVAFPRKIPPKDSLVFDP SNKILRLYVTVGAIVGLYLPVAYIFEGVLEGDKAGIKAAAPHVFLLASQVFMEGVAFS ARFSIPVRVFVPVFYNSRRIFTLVDWLRTEFSKMDNEYAGSARRLYVGRVLAVANMAF WCFNLFGFLLPVYLPKAFKMYYTQSKEHFRNLNLEHLVKLTQEGTCIKHCFIVGGQPL PTNAGFRVGLANSRNEFMPRRFIWKGSFVDAFLLRMKKRDLPLNRKILMDKLLFIVRS LKEKLVNNFQSSVLHGNEDF" gene complement(26748569..26753318) /locus_tag="TCM_015202" /note="dbxref CacaoGD:Thecc1EG015202" mRNA complement(join(26748569..26748832,26749137..26749227, 26749655..26749788,26750036..26750217,26750496..26750596, 26750961..26751039,26751223..26751333,26751418..26751609, 26751771..26751992,26752257..26752584,26753082..26753318)) /locus_tag="TCM_015202" /product="SKP1-like protein 21 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028906001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005319t5" /inference="similar to AA sequence:Phytozome:GSVIVT01028906001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7163t3; alternateUTRof:Thecc1EG015202t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7163t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9219t1" mRNA complement(join(26748569..26748832,26749137..26749227, 26749655..26750217,26750496..26750596,26750961..26751039, 26751223..26751333,26751418..26751609,26751771..26751992, 26752257..26752773)) /locus_tag="TCM_015202" /product="SKP1-like protein 21 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028906001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005319t5" /inference="similar to AA sequence:Phytozome:GSVIVT01028906001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:PASA:2:TSA:puevd3b014688t1a5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7163t3" mRNA complement(join(26748605..26748832,26749137..26749227, 26749655..26749788,26750036..26750217,26750496..26750596, 26750961..26751039,26751223..26751333,26751418..26751609, 26751771..26751992,26752257..26752773)) /locus_tag="TCM_015202" /product="SKP1-like protein 21 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028906001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005319t5" /inference="similar to AA sequence:Phytozome:GSVIVT01028906001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00748t00004; alternateUTRof:Thecc1EG015202t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7163t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9219t1" mRNA complement(join(26748803..26748832,26749137..26749227, 26749655..26749788,26750036..26750217,26750496..26750596, 26750961..26751039,26751223..26751333,26751418..26751609, 26751771..26751992,26752257..26752584,26753082..26753317)) /locus_tag="TCM_015202" /product="SKP1-like protein 21 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028906001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005319t5" /inference="similar to AA sequence:Phytozome:GSVIVT01028906001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7163t3" mRNA complement(join(26748885..26749227,26749655..26749788, 26750036..26750217,26750496..26750596,26750961..26751039, 26751223..26751333,26751418..26751609,26751771..26751992, 26752257..26752773)) /locus_tag="TCM_015202" /product="SKP1-like protein 21 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028906001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005319t5" /inference="similar to AA sequence:Phytozome:GSVIVT01028906001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00748t00003; alternateUTRof:Thecc1EG015202t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7163t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9219t1" mRNA complement(join(26748885..26749227,26749655..26750217, 26750496..26750596,26750961..26751039,26751223..26751333, 26751418..26751609,26751771..26751992,26752257..26752773)) /locus_tag="TCM_015202" /product="SKP1-like protein 21 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028906001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005319t5" /inference="similar to AA sequence:Phytozome:GSVIVT01028906001" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b014688t1a6; alternateUTRof:Thecc1EG015202t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7163t3" CDS complement(join(26749211..26749227,26749655..26749788, 26750036..26750217,26750496..26750596,26750961..26751039, 26751223..26751333,26751418..26751609,26751771..26751992, 26752257..26752292)) /locus_tag="TCM_015202" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005319t5" /codon_start=1 /product="SKP1-like protein 21 isoform 1" /protein_id="EOY23237.1" /db_xref="Phytozome:GSVIVT01028906001" /db_xref="TAIR:AT3G61415.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQG7" /translation="MSEGVMAVVKPEMKSYIWLQTTDGSIQQVEEEVAMFCPMICREI LQTGMGSSKNYAISLPQRVNPAILGLILDYCRFHQVPGHSNKERKTFDEKFVRMDTKR LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNI TDDPRIRLLNRLYARKRKELKEREKLKNVEVEEERVDERSVDDLLSFINGGDQDSKGV RTTKNKKKNRRRKEQLKHSSDSVDVNYNKELDAAPAACNQGNIDNILVPTRSKTSKLQ DSSAVIFSPKMEFDDADIDDDIDPAMKEELDREVEDFARRLNSDWPERMQEILSLGHE RRLVPMSINGEGPMSRFSKWTAA" CDS complement(join(26749211..26749227,26749655..26749788, 26750036..26750217,26750496..26750596,26750961..26751039, 26751223..26751333,26751418..26751609,26751771..26751992, 26752257..26752292)) /locus_tag="TCM_015202" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005319t5" /codon_start=1 /product="SKP1-like protein 21 isoform 1" /protein_id="EOY23238.1" /db_xref="Phytozome:GSVIVT01028906001" /db_xref="TAIR:AT3G61415.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQG7" /translation="MSEGVMAVVKPEMKSYIWLQTTDGSIQQVEEEVAMFCPMICREI LQTGMGSSKNYAISLPQRVNPAILGLILDYCRFHQVPGHSNKERKTFDEKFVRMDTKR LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNI TDDPRIRLLNRLYARKRKELKEREKLKNVEVEEERVDERSVDDLLSFINGGDQDSKGV RTTKNKKKNRRRKEQLKHSSDSVDVNYNKELDAAPAACNQGNIDNILVPTRSKTSKLQ DSSAVIFSPKMEFDDADIDDDIDPAMKEELDREVEDFARRLNSDWPERMQEILSLGHE RRLVPMSINGEGPMSRFSKWTAA" CDS complement(join(26749211..26749227,26749655..26749788, 26750036..26750217,26750496..26750596,26750961..26751039, 26751223..26751333,26751418..26751609,26751771..26751992, 26752257..26752292)) /locus_tag="TCM_015202" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005319t5" /codon_start=1 /product="SKP1-like protein 21 isoform 1" /protein_id="EOY23239.1" /db_xref="Phytozome:GSVIVT01028906001" /db_xref="TAIR:AT3G61415.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQG7" /translation="MSEGVMAVVKPEMKSYIWLQTTDGSIQQVEEEVAMFCPMICREI LQTGMGSSKNYAISLPQRVNPAILGLILDYCRFHQVPGHSNKERKTFDEKFVRMDTKR LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNI TDDPRIRLLNRLYARKRKELKEREKLKNVEVEEERVDERSVDDLLSFINGGDQDSKGV RTTKNKKKNRRRKEQLKHSSDSVDVNYNKELDAAPAACNQGNIDNILVPTRSKTSKLQ DSSAVIFSPKMEFDDADIDDDIDPAMKEELDREVEDFARRLNSDWPERMQEILSLGHE RRLVPMSINGEGPMSRFSKWTAA" CDS complement(join(26749211..26749227,26749655..26749788, 26750036..26750217,26750496..26750596,26750961..26751039, 26751223..26751333,26751418..26751609,26751771..26751992, 26752257..26752292)) /locus_tag="TCM_015202" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG005319t5" /codon_start=1 /product="SKP1-like protein 21 isoform 1" /protein_id="EOY23241.1" /db_xref="Phytozome:GSVIVT01028906001" /db_xref="TAIR:AT3G61415.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQG7" /translation="MSEGVMAVVKPEMKSYIWLQTTDGSIQQVEEEVAMFCPMICREI LQTGMGSSKNYAISLPQRVNPAILGLILDYCRFHQVPGHSNKERKTFDEKFVRMDTKR LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNI TDDPRIRLLNRLYARKRKELKEREKLKNVEVEEERVDERSVDDLLSFINGGDQDSKGV RTTKNKKKNRRRKEQLKHSSDSVDVNYNKELDAAPAACNQGNIDNILVPTRSKTSKLQ DSSAVIFSPKMEFDDADIDDDIDPAMKEELDREVEDFARRLNSDWPERMQEILSLGHE RRLVPMSINGEGPMSRFSKWTAA" mRNA complement(join(26749554..26750217,26750496..26750596, 26750961..26751039,26751223..26751333,26751418..26751609, 26751771..26751992,26752257..26752584,26753082..26753318)) /locus_tag="TCM_015202" /product="SKP1-like protein 21 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028906001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005319t5" /inference="similar to AA sequence:Phytozome:GSVIVT01028906001" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:PASA:2:TSA:puevd3b014688t1a7; alternateUTRof:Thecc1EG015202t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7163t3" CDS complement(join(26750008..26750217,26750496..26750596, 26750961..26751039,26751223..26751333,26751418..26751609, 26751771..26751992,26752257..26752292)) /locus_tag="TCM_015202" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG005319t5" /codon_start=1 /product="SKP1-like protein 21 isoform 4" /protein_id="EOY23240.1" /db_xref="Phytozome:GSVIVT01028906001" /db_xref="TAIR:AT3G61415.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQG7" /translation="MSEGVMAVVKPEMKSYIWLQTTDGSIQQVEEEVAMFCPMICREI LQTGMGSSKNYAISLPQRVNPAILGLILDYCRFHQVPGHSNKERKTFDEKFVRMDTKR LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNI TDDPRIRLLNRLYARKRKELKEREKLKNVEVEEERVDERSVDDLLSFINGGDQDSKGV RTTKNKKKNRRRKEQLKHSSDSVDVNYNKELDAAPAACNQGNIDNILVPTRSKTSKLQ DSSAVIFSPKMEFDDADIDDDIDPAMKEELDRFVGCLSCF" CDS complement(join(26750008..26750217,26750496..26750596, 26750961..26751039,26751223..26751333,26751418..26751609, 26751771..26751992,26752257..26752292)) /locus_tag="TCM_015202" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG005319t5" /codon_start=1 /product="SKP1-like protein 21 isoform 4" /protein_id="EOY23242.1" /db_xref="Phytozome:GSVIVT01028906001" /db_xref="TAIR:AT3G61415.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQG7" /translation="MSEGVMAVVKPEMKSYIWLQTTDGSIQQVEEEVAMFCPMICREI LQTGMGSSKNYAISLPQRVNPAILGLILDYCRFHQVPGHSNKERKTFDEKFVRMDTKR LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNI TDDPRIRLLNRLYARKRKELKEREKLKNVEVEEERVDERSVDDLLSFINGGDQDSKGV RTTKNKKKNRRRKEQLKHSSDSVDVNYNKELDAAPAACNQGNIDNILVPTRSKTSKLQ DSSAVIFSPKMEFDDADIDDDIDPAMKEELDRFVGCLSCF" CDS complement(join(26750008..26750217,26750496..26750596, 26750961..26751039,26751223..26751333,26751418..26751609, 26751771..26751992,26752257..26752292)) /locus_tag="TCM_015202" /note="encoded by transcript variant 8; alternatively spliced; paralog of Thecc1EG005319t5" /codon_start=1 /product="SKP1-like protein 21 isoform 4" /protein_id="EOY23243.1" /db_xref="Phytozome:GSVIVT01028906001" /db_xref="TAIR:AT3G61415.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQG7" /translation="MSEGVMAVVKPEMKSYIWLQTTDGSIQQVEEEVAMFCPMICREI LQTGMGSSKNYAISLPQRVNPAILGLILDYCRFHQVPGHSNKERKTFDEKFVRMDTKR LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNI TDDPRIRLLNRLYARKRKELKEREKLKNVEVEEERVDERSVDDLLSFINGGDQDSKGV RTTKNKKKNRRRKEQLKHSSDSVDVNYNKELDAAPAACNQGNIDNILVPTRSKTSKLQ DSSAVIFSPKMEFDDADIDDDIDPAMKEELDRFVGCLSCF" gene 26754248..26759781 /locus_tag="TCM_015204" /note="dbxref CacaoGD:Thecc1EG015204" mRNA join(26754248..26754507,26755597..26755828, 26756068..26756147,26756307..26756468,26756565..26756718, 26757205..26757352,26757934..26758018,26758125..26758213, 26759200..26759781) /locus_tag="TCM_015204" /product="NAD(P)-binding Rossmann-fold superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028899001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016274t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028899001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7151t4" CDS join(26754402..26754507,26755597..26755828, 26756068..26756147,26756307..26756468,26756565..26756718, 26757205..26757352,26757934..26758018,26758125..26758213, 26759200..26759358) /locus_tag="TCM_015204" /note="paralog of Thecc1EG016274t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein, putative" /protein_id="EOY23244.1" /db_xref="Phytozome:GSVIVT01028899001" /db_xref="TAIR:AT4G23430.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6K5" /translation="MWLFSRKGPSGLSSSSTAEEVTQGIDGTGLTAIVTGASSGIGTE TTRVLALRGVHVIMGVRNMAAGKDVKEAIVKEIPTAKVDAMELDLSSMASVKKFASDF SSSGRPLNLLINNAGIMATPFMLSRDNIELQFATNHIAHLHSDCEIRTSGDQDGFCHL NNAVKTLNLHSLSATTPIAICFSCCVEFGYGKRGHFLLTNLLLDTMKKTARASKREGR IINVSSVAHHYTYKEGIRFDKINDKSGYSSFAAYGQSKLANVLHANELARRLKVCDLL FHGIGWEVLSLVKLLVLLEDGLDITANSLHPGAIVTNLFRHKGIVDVCSMHLTIFLGL DAGIVNIFGRVALKKVQQGAATTCYVALHPQVKGKTGEYFEDSNIGQASAHGRNVELA KKLWDFSMKMVK" gene 26760321..26762805 /locus_tag="TCM_015205" /note="dbxref CacaoGD:Thecc1EG015205" mRNA join(26760321..26760674,26760927..26761202, 26761298..26761567,26761664..26762509,26762596..26762805) /locus_tag="TCM_015205" /product="Transducin family protein / WD-40 repeat family protein" /inference="alignment:exonerate- protein:2:ricco:30073.m002224" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025065t1" /inference="similar to AA sequence:ricco:30073.m002224" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9233t1" CDS join(26760576..26760674,26760927..26761202, 26761298..26761567,26761664..26762386) /locus_tag="TCM_015205" /note="dbxref ricco:30073.m002224; paralog of Thecc1EG025065t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein" /protein_id="EOY23245.1" /db_xref="TAIR:AT4G33270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K2T7" /translation="MDAGSLNSFSNLKGQSRCPLQEQLLQRRNSKENMDRFIPNRSAM DFDYAHYMLTEGRKVKENQTVCSPAREAYRKQLAETLNMNRTRILAFKNKPPTPVELF PSEHSTSSVHPTKSAKPRRHIPQSSERTLDAPDLVDDFYLNLLDWGSSNVLAIALGNT VYLWDASDSSTSELVTVDDENGPVTSVSWAPDGRHIAIGLNNSEVQLWDSASNRQLRT LRGCHRSRVGSLAWNNHILTTGGIDGQIVNNDVRIRSHVVETYRGHQQEVCGLKWSAS GQQLASGGNDNLVHIWDRSMASSNSPTQWLHRLEDHTSAVKALAWCPFQSNLLATGGG GGDRTIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLVLWKYPSMV KMAELTGHTSRVLYMAQSPDGCTVASAAGDETLRFWNVFGVPEVAKPAPKANPEPFSQ LNRIR" gene 26764226..26767472 /locus_tag="TCM_015206" /note="dbxref CacaoGD:Thecc1EG015206" mRNA join(26764226..26764648,26764768..26764880, 26764976..26765221,26765367..26765446,26765576..26765729, 26765818..26765896,26766363..26766447,26766879..26766985, 26767077..26767472) /locus_tag="TCM_015206" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s12960.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016274t1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11155t00001" CDS join(26764460..26764648,26764768..26764880, 26764976..26765221,26765367..26765446,26765576..26765729, 26765818..26765896,26766363..26766447,26766879..26766985, 26767077..26767250) /locus_tag="TCM_015206" /note="paralog of Thecc1EG016274t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY23246.1" /translation="MWLFSRKGASGFSATTTAEEATQGIDGTGLTASSQVLLFTLFSP KENNKKEGNPFHSIFSAFWVSSLEYEQEGKERGNTALTYVFGFTSLSLLMFTKIKPYS CFSGGSSGIGTETARVLALRGVHVVVGVRNMTAGRGVKETIVQQNPNAKIDAMELDLS SMASVRKFAADFKSSGLPLNILINNAGIMATSFMLSKDGIELQFATNHMGHFLLTNLL LETMKKTADGSKTEGRIVNVSSRRHKFSYPEGIRFDKINDQSGYNSVSAYGQSKLANV LHANELARRLKEDQVAITANSIHPGVIATNLFRHLSFLSAFILINEQKETIILFSGSV AGLVGLFGKYVIKNVEQGAATTCYVALHPQVKGRTGLYFADCNVAETSVQANDSELAW KLWDFSLSLVNKRPHT" gene complement(26767458..26775275) /locus_tag="TCM_015207" /note="dbxref CacaoGD:Thecc1EG015207" mRNA complement(join(26767458..26768901,26769028..26769113, 26770261..26770500,26770690..26770797,26770973..26771032, 26771216..26771291,26771413..26771573,26771897..26771959, 26772092..26772179,26772470..26773210,26773366..26774133, 26774975..26775275)) /locus_tag="TCM_015207" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016276t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s12870.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7186t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7186t1; inference alignment:Newbler:10:TSA:cgbaB_g02331t00002" mRNA complement(join(26767630..26768901,26769028..26769113, 26769593..26769672,26769746..26769908,26770261..26770500, 26770690..26770797,26770973..26771032,26771216..26771291, 26771413..26771573,26771897..26771959,26772092..26772179, 26772470..26773210,26773366..26774098,26774975..26775243)) /locus_tag="TCM_015207" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016276t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s12950.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7186t1" CDS complement(join(26768388..26768901,26769028..26769113, 26770261..26770500,26770690..26770797,26770973..26771032, 26771216..26771291,26771413..26771573,26771897..26771959, 26772092..26772179,26772470..26773210,26773366..26773922)) /locus_tag="TCM_015207" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016276t1" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY23248.1" /db_xref="Phytozome:POPTR_0015s12870.1" /db_xref="TAIR:AT1G63700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6UY78" /translation="MPSWWGKSSSKEVKKKTSKESFIDTLHRKFKIPSEGKPNSRSGV SRRRCTDTISEKGSQSQAVSRSPSPSKQVSRCQSFAERPLAQPLPLPDLHPAIVGRTD SGISISTKPRQEKGSKSSLFLPLPRPACIRHRPNRNDLDGDFITASVSSECSAESDDP TDSLHRSPQATDYDNGTRTAASSPSSLMLKDHSSTVSQSNSREAKKQTSISLGNNISP KSPKRRPISNHVPNLQVPQHGTFTSAPDSSMSSPSRSPMRAFGTEQLMNSPFWVGKTY TDVTLLGSGHCSSPGSGHNSGHNSMGGDMSGQLFWQQSRGSPEYSPNPSPRMASAGPS SRIHSGAVTPIHPRSAGIATESQTSWHDDGKQQSHRLPLPPVTIPTPSPFSHSNSAAT SPSVPRSPGRAENPVNPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDD AKSKESTKQLMQEISLLSRLWHPNIVQYYGSEKVDDRLYIYLEYVSGGSIYKLLQEYG QLKEPVIRSYTQQILSGLAYLHSKSTVHRDIKGANILVDPNGRVKLADFGMAKHIAGQ SCPLSFKGSPYWLAPEVIRNTSGYNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFK IGNSKELPPIPDCLPDEGKDFVRQCLQRNPLHRPTAVQLLDHPFVKCAAPLERPIPDP EPPDPTPGVTNGVKALGIGQTRNYSSLDSEQLAVHSSRVSKLHASDVGIPRNVSCPVS PIGSPLLHSRSPQHLNGRMSPSPISSPRTTSGSSTPLTGGNGAIPFGYLKQSAYLQEG FGSMPKPSNGLYVSGSSYHDSNPDIFRGLQSGSHIFSELVPSENDVLGIGRSVHGESY DGQSVLADRVSRQLLKDHATMSPSLDLSPRSPSPSRTGVII" CDS complement(join(26768388..26768901,26769028..26769113, 26769593..26769672,26769746..26769908,26770261..26770500, 26770690..26770797,26770973..26771032,26771216..26771291, 26771413..26771573,26771897..26771959,26772092..26772179, 26772470..26773210,26773366..26773922)) /locus_tag="TCM_015207" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016276t1" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY23247.1" /db_xref="Phytozome:POPTR_0012s12950.1" /db_xref="TAIR:AT1G63700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6UY78" /translation="MPSWWGKSSSKEVKKKTSKESFIDTLHRKFKIPSEGKPNSRSGV SRRRCTDTISEKGSQSQAVSRSPSPSKQVSRCQSFAERPLAQPLPLPDLHPAIVGRTD SGISISTKPRQEKGSKSSLFLPLPRPACIRHRPNRNDLDGDFITASVSSECSAESDDP TDSLHRSPQATDYDNGTRTAASSPSSLMLKDHSSTVSQSNSREAKKQTSISLGNNISP KSPKRRPISNHVPNLQVPQHGTFTSAPDSSMSSPSRSPMRAFGTEQLMNSPFWVGKTY TDVTLLGSGHCSSPGSGHNSGHNSMGGDMSGQLFWQQSRGSPEYSPNPSPRMASAGPS SRIHSGAVTPIHPRSAGIATESQTSWHDDGKQQSHRLPLPPVTIPTPSPFSHSNSAAT SPSVPRSPGRAENPVNPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDD AKSKESTKQLMQEISLLSRLWHPNIVQYYGSEKVDDRLYIYLEYVSGGSIYKLLQEYG QLKEPVIRSYTQQILSGLAYLHSKSTVHRDIKGANILVDPNGRVKLADFGMAKHIAGQ SCPLSFKGSPYWLAPEVIRNTSGYNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFK IGNSKELPPIPDCLPDEGKDFVRQCLQRNPLHRPTAVQLLDHPFVKCAAPLERPIPDP EPPDPTPGVTNGVKALCISSLISYFIVVIGEGCRGGQNPKKETKNFKGTNQGLTMPKL PCSNRSLVPTHSYMPNFGSVISLGFWLTTDKSVGIANIFGIGQTRNYSSLDSEQLAVH SSRVSKLHASDVGIPRNVSCPVSPIGSPLLHSRSPQHLNGRMSPSPISSPRTTSGSST PLTGGNGAIPFGYLKQSAYLQEGFGSMPKPSNGLYVSGSSYHDSNPDIFRGLQSGSHI FSELVPSENDVLGIGRSVHGESYDGQSVLADRVSRQLLKDHATMSPSLDLSPRSPSPS RTGVII" gene complement(26777238..26810339) /locus_tag="TCM_015208" /note="dbxref CacaoGD:Thecc1EG015208" mRNA complement(join(26777238..26778121,26779840..26780029, 26780150..26781223)) /locus_tag="TCM_015208" /product="Divalent ion symporter isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015214t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400052140" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7197t1" mRNA complement(join(26777258..26778121,26779840..26780029, 26780150..26781150,26809973..26810011,26810152..26810339)) /locus_tag="TCM_015208" /product="Divalent ion symporter isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015214t2" /inference="similar to AA sequence:ricco:30169.m006237" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7197t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7197t1; inference alignment:Newbler:10:TSA:cgbaP2_g01422t00001" mRNA complement(join(26777708..26778121,26779840..26780029, 26780150..26781075,26809725..26810011,26810152..26810275)) /locus_tag="TCM_015208" /product="Divalent ion symporter isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015214t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400052140" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01422t00001; alternateUTRof:Thecc1EG015208t1; inference alignment:Newbler:10:TSA:cgbaP2_g01422t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7197t1" mRNA complement(join(26777741..26778121,26779840..26780029, 26780150..26781150,26781247..26781362,26781503..26781577)) /locus_tag="TCM_015208" /product="Divalent ion symporter isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015214t2" /inference="similar to AA sequence:ricco:30169.m006237" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00889t00003; alternateUTRof:Thecc1EG015208t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7197t1; inference alignment:Newbler:10:TSA:cgbaP2_g01422t00001" mRNA complement(join(26777741..26778121,26779840..26780029, 26780150..26781362,26781503..26781577)) /locus_tag="TCM_015208" /product="Divalent ion symporter isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015214t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400052140" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00889t00001; alternateUTRof:Thecc1EG015208t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7197t1; inference alignment:Newbler:10:TSA:cgbaP2_g01422t00001" CDS complement(join(26777856..26778121,26779840..26780029, 26780150..26781075,26809725..26809869)) /locus_tag="TCM_015208" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015214t2" /codon_start=1 /product="Divalent ion symporter isoform 1" /protein_id="EOY23251.1" /db_xref="Phytozome:PGSC0003DMP400052140" /db_xref="TAIR:AT1G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81915" /translation="MAMASYVKLILGSIAFAIFWVLAVFPAVPCLPIGRTAGSLLGGM LMVIFQVLTVDQAYEAIDLSILGLLFGTMVVSGYLESADAFKYLGKLLTWKSKGAKDL ICRICLISAISSAFFTNDTSCMVLTEFVLKIARQKNLPPQPFLLALASSANIGSTATP IGNPQNLVIATQSGISFGEFLTGILPATILGSIVNALLLICMYWNLLSVKIDEEDSAA QFLTGDGVSSHHFSPATMSRLASSSSQGRLPGLEITNVLTSPHVNGSVNLAYHDTLRN RVNSDQGETEIHGFLNGPWESRNSNCSERWKRKLWKSCVYLVVVGMLISLLMGLNMSG TAISAALALMILDFKDAVPCLEKVSYSLLIFFCGMFVTVQGFNKTGIPSALWELMEPY AKIDQVSGMAVLALVILVLSNLVSNVPTVLLLGARMAASAALISTAFEKKAWLILSWV STVAGNLSLLGSAANLIVCEQACRVPNLGYTLTFWSHLKFGVPSTLLVTAIGLILIKS " CDS complement(join(26777856..26778121,26779840..26780029, 26780150..26781220)) /locus_tag="TCM_015208" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015214t2" /codon_start=1 /product="Divalent ion symporter isoform 1" /protein_id="EOY23249.1" /db_xref="Phytozome:PGSC0003DMP400052140" /db_xref="TAIR:AT1G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81915" /translation="MAMASYVKLILGSIAFAIFWVLAVFPAVPCLPIGRTAGSLLGGM LMVIFQVLTVDQAYEAIDLSILGLLFGTMVVSGYLESADAFKYLGKLLTWKSKGAKDL ICRICLISAISSAFFTNDTSCMVLTEFVLKIARQKNLPPQPFLLALASSANIGSTATP IGNPQNLVIATQSGISFGEFLTGILPATILGSIVNALLLICMYWNLLSVKIDEEDSAA QFLTGDGVSSHHFSPATMSRLASSSSQGRLPGLEITNVLTSPHVNGSVNLAYHDTLRN RVNSDQGETEIHGFLNGPWESRNSNCSERWKRKLWKSCVYLVVVGMLISLLMGLNMSG TAISAALALMILDFKDAVPCLEKVSYSLLIFFCGMFVTVQGFNKTGIPSALWELMEPY AKIDQVSGMAVLALVILVLSNLVSNVPTVLLLGARMAASAALISTAFEKKAWLILSWV STVAGNLSLLGSAANLIVCEQACRVPNLGYTLTFWSHLKFGVPSTLLVTAIGLILIKS " CDS complement(join(26777856..26778121,26779840..26780029, 26780150..26781220)) /locus_tag="TCM_015208" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG015214t2" /codon_start=1 /product="Divalent ion symporter isoform 1" /protein_id="EOY23253.1" /db_xref="Phytozome:PGSC0003DMP400052140" /db_xref="TAIR:AT1G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81915" /translation="MAMASYVKLILGSIAFAIFWVLAVFPAVPCLPIGRTAGSLLGGM LMVIFQVLTVDQAYEAIDLSILGLLFGTMVVSGYLESADAFKYLGKLLTWKSKGAKDL ICRICLISAISSAFFTNDTSCMVLTEFVLKIARQKNLPPQPFLLALASSANIGSTATP IGNPQNLVIATQSGISFGEFLTGILPATILGSIVNALLLICMYWNLLSVKIDEEDSAA QFLTGDGVSSHHFSPATMSRLASSSSQGRLPGLEITNVLTSPHVNGSVNLAYHDTLRN RVNSDQGETEIHGFLNGPWESRNSNCSERWKRKLWKSCVYLVVVGMLISLLMGLNMSG TAISAALALMILDFKDAVPCLEKVSYSLLIFFCGMFVTVQGFNKTGIPSALWELMEPY AKIDQVSGMAVLALVILVLSNLVSNVPTVLLLGARMAASAALISTAFEKKAWLILSWV STVAGNLSLLGSAANLIVCEQACRVPNLGYTLTFWSHLKFGVPSTLLVTAIGLILIKS " CDS complement(join(26777856..26778121,26779840..26780029, 26780150..26781091)) /locus_tag="TCM_015208" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006237; paralog of Thecc1EG015214t2" /codon_start=1 /product="Divalent ion symporter isoform 2" /protein_id="EOY23250.1" /db_xref="TAIR:AT1G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81915" /translation="MLMVIFQVLTVDQAYEAIDLSILGLLFGTMVVSGYLESADAFKY LGKLLTWKSKGAKDLICRICLISAISSAFFTNDTSCMVLTEFVLKIARQKNLPPQPFL LALASSANIGSTATPIGNPQNLVIATQSGISFGEFLTGILPATILGSIVNALLLICMY WNLLSVKIDEEDSAAQFLTGDGVSSHHFSPATMSRLASSSSQGRLPGLEITNVLTSPH VNGSVNLAYHDTLRNRVNSDQGETEIHGFLNGPWESRNSNCSERWKRKLWKSCVYLVV VGMLISLLMGLNMSGTAISAALALMILDFKDAVPCLEKVSYSLLIFFCGMFVTVQGFN KTGIPSALWELMEPYAKIDQVSGMAVLALVILVLSNLVSNVPTVLLLGARMAASAALI STAFEKKAWLILSWVSTVAGNLSLLGSAANLIVCEQACRVPNLGYTLTFWSHLKFGVP STLLVTAIGLILIKS" CDS complement(join(26777856..26778121,26779840..26780029, 26780150..26781091)) /locus_tag="TCM_015208" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30169.m006237; paralog of Thecc1EG015214t2" /codon_start=1 /product="Divalent ion symporter isoform 2" /protein_id="EOY23252.1" /db_xref="TAIR:AT1G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81915" /translation="MLMVIFQVLTVDQAYEAIDLSILGLLFGTMVVSGYLESADAFKY LGKLLTWKSKGAKDLICRICLISAISSAFFTNDTSCMVLTEFVLKIARQKNLPPQPFL LALASSANIGSTATPIGNPQNLVIATQSGISFGEFLTGILPATILGSIVNALLLICMY WNLLSVKIDEEDSAAQFLTGDGVSSHHFSPATMSRLASSSSQGRLPGLEITNVLTSPH VNGSVNLAYHDTLRNRVNSDQGETEIHGFLNGPWESRNSNCSERWKRKLWKSCVYLVV VGMLISLLMGLNMSGTAISAALALMILDFKDAVPCLEKVSYSLLIFFCGMFVTVQGFN KTGIPSALWELMEPYAKIDQVSGMAVLALVILVLSNLVSNVPTVLLLGARMAASAALI STAFEKKAWLILSWVSTVAGNLSLLGSAANLIVCEQACRVPNLGYTLTFWSHLKFGVP STLLVTAIGLILIKS" mRNA complement(join(26779267..26780029,26780150..26781362, 26781503..26781577)) /locus_tag="TCM_015208" /product="Divalent ion symporter isoform 6" /inference="alignment:exonerate-protein:2:frave:gene13228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015214t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400052140" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00889t00002; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7197t1; inference alignment:Newbler:10:TSA:cgbaP2_g01422t00001" CDS complement(join(26779799..26780029,26780150..26781220)) /locus_tag="TCM_015208" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG015214t2" /codon_start=1 /product="Divalent ion symporter isoform 6" /protein_id="EOY23254.1" /db_xref="Phytozome:PGSC0003DMP400052140" /db_xref="TAIR:AT1G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81915" /translation="MAMASYVKLILGSIAFAIFWVLAVFPAVPCLPIGRTAGSLLGGM LMVIFQVLTVDQAYEAIDLSILGLLFGTMVVSGYLESADAFKYLGKLLTWKSKGAKDL ICRICLISAISSAFFTNDTSCMVLTEFVLKIARQKNLPPQPFLLALASSANIGSTATP IGNPQNLVIATQSGISFGEFLTGILPATILGSIVNALLLICMYWNLLSVKIDEEDSAA QFLTGDGVSSHHFSPATMSRLASSSSQGRLPGLEITNVLTSPHVNGSVNLAYHDTLRN RVNSDQGETEIHGFLNGPWESRNSNCSERWKRKLWKSCVYLVVVGMLISLLMGLNMSG TAISAALALMILDFKDAVPCLEKVSYSLLIFFCGMFVTVQGFNKTGIPSALWELMEPY AKIDQVSGMAVLALVILVLSNLVSNVPTGMLIFLFYVALSS" mobile_element 26782788..26783026 /note="source:scaffold_4_CACTA_0482 6077 6332" /mobile_element_type="transposon:TIR/CACTA" gene complement(26785016..26787793) /locus_tag="TCM_015210" /note="dbxref CacaoGD:Thecc1EG015210" mRNA complement(join(26785016..26785446,26785626..26785815, 26785966..26787332,26787583..26787793)) /locus_tag="TCM_015210" /product="Divalent ion symporter" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015214t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400052140" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1334t6" CDS complement(join(26785184..26785446,26785626..26785815, 26785966..26787159)) /locus_tag="TCM_015210" /note="paralog of Thecc1EG015214t2" /codon_start=1 /product="Divalent ion symporter" /protein_id="EOY23255.1" /db_xref="Phytozome:PGSC0003DMP400052140" /db_xref="TAIR:AT1G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B2B0" /translation="MAMASSVKVVLGSIAFAIFWVLAVFPAVPFLPVGRTAGSLLGAM LMVLFGVITPDQAYDAIDLPILGLLFGTMVVSVYLERADMFKYLGKLLAWKSKGAKDL LFRICLISAISSALFTNDTSCVILTEFVLKIARQHNLPPHPFLLALASSANIGSSATP IGNPQNLVIAIQSGISFGDFLIGILPAMLVGVLVNALLLLCMYWRVLSVQKDEEDPSR AAVAEEDVISHRFSPATMSHISPLNPQEWNSTFDSMNVIRSPNANGSTAHVETLRNRV KSADQNEIQRVPSGAIDSARNSNASKEATTDDHSHGKEEPVASKMIALTDSLQDVCSV QPSEEKENLPRRWKRRFWKFSVYFVTMGMLISLLMGLNMSWTAVTAALALIVVDFQDA QPCLEKVSYSLLIFFCGMFITVDGFNKSGIPSTLWNLMEPYAKINHVSGIAILAIVIL GLSNLASNVPTVLLLGGRVAASAAAISASDEKKAWLMLAWVSTVAGNLSLLGSAANLI VCEQARRAPQLGYTLSFWKHLKFGVPSTLIVTAIGLTLFR" gene complement(<26785723..26816516) /locus_tag="TCM_015214" /note="dbxref CacaoGD:Thecc1EG015214" mRNA complement(join(<26785723..26785815,26785966..26786019, 26814726..26816041,26816289..26816516)) /locus_tag="TCM_015214" /product="Divalent ion symporter isoform 4" /inference="alignment:exonerate- protein:2:ricco:30169.m006237.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015210t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s12850.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1330t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1330t5; inference alignment:Newbler:10:TSA:cgbaP2_g04389t00001" CDS complement(join(<26785723..26785815,26785966..26786019, 26814726..26815865)) /locus_tag="TCM_015214" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG015210t1" /codon_start=1 /product="Divalent ion symporter isoform 4" /protein_id="EOY23259.1" /db_xref="Phytozome:POPTR_0015s12850.1" /db_xref="TAIR:AT1G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B2B0" /translation="MAMASSVKVVLGSIAFAIFWVLAVFPAVPFLPVGRTAGSLLGAM LMVLFRVITPDQAYDAIDLPILGLLFGTMVVSVYLERADMFKYLGKLLAWKSKGAKDL ICRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATP IGNPQNLVIAVQSKISFGDFLIGILPAMLVGVLVNALLLLCMYWRLLSVQKDEEDPSG AAVAEEDVSSHRFSPATMSHFSSLNPQEWNSTLDSKNVMRSPNANGSTAHVETLRNRG NSADQNEIQRVPSGSIDSARNSNASKEATTDDHSHGKEEPVALKMIALTDSLQDVCSV QSSEEKENLPRRWKRRFWKFSVFFVTMGMLISLLMGLNMSWTAITAALALIVVDFQDA QPCLEKVSYSLLIFFCGMFITVDGFNKSGIPSTLWNL" mobile_element complement(26788255..26788905) /note="source:CACAO_on_E168_scaffold_10 429 1119" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(26789142..26789640) /note="source:CACAO_on_E2_scaffold_1 12 519" /mobile_element_type="transposon:TIR/hAT" mobile_element 26791309..26791785 /note="source:CACAO_M_S_E32538_F74_scaffold_3 1 477" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26792594..26792765) /note="source:INTACT461_F221_scaffold_3-int 232 402" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(26792599..26802242) /locus_tag="TCM_015211" /note="dbxref CacaoGD:Thecc1EG015211" mRNA complement(join(26792599..26793160,26794439..26794628, 26794736..26796171,26802116..26802242)) /locus_tag="TCM_015211" /product="Divalent ion symporter" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g029990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015217t2" /inference="similar to AA sequence:ricco:30169.m006237" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" mobile_element complement(26792799..26792911) /note="source:INTACT461_F221_scaffold_3-int 1 114" /mobile_element_type="retrotransposon:LTR/Unclassified" CDS complement(join(26792892..26793160,26794439..26794628, 26794736..26795917)) /locus_tag="TCM_015211" /note="dbxref ricco:30169.m006237; paralog of Thecc1EG015217t2" /codon_start=1 /product="Divalent ion symporter" /protein_id="EOY23260.1" /db_xref="TAIR:AT1G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B2B0" /translation="MDMAFPVDVVLGSIAFAVFWVLAVFPTVPFMPIRRTAGSLLGGL LMVLFGVMTPDQAYSTIDLPILGLLFGTMVVSVYLERADMCKYLAKLLAWTSKGAKDL IFRICLISAISSALFTNNTSCVILTEFVLTIARQHNLPPHPFLLALATSANIGSAATP IGSPQNLVIAFNSKISFGDFLIGILPAMLVGLIVNFLLLLCMYWSLLSIPIDEEDAIG KVVADENRIFPCDSPATMLHSSSLNSQEWNSILETMNPQISPKTNTNTAYVDTLKNRE SFAESEMIQVVSKSAVESNAVMITVTSVGSSERSEAIPLLSKQHRVRAPVFVESSKPA GKENLATRWKRTMWKPCVYLVTLGMLISFLMDFNMSWTAITAAIALIVLDFNDAHPWL EKVSYPLLVFFCGMFATVAGFNKTGIPSTLWDLVEPYAKINDIFGIAVLAIVILVLSN LASNVPTVLLLRKPVALSASAISATHEKKAWLILAWVSTVAGNLSLLGSAANLMVCEQ ARHALVGYNLSFWKHLKFGVPSTLIVTAIGLALLKNKI" mobile_element complement(26793884..26793928) /note="source:CACAO_Mariner_E38_scaffold_2 1204 1248" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(26794170..26794413) /note="source:CACAO_Mariner_E38_scaffold_2 974 1202" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 26800042..26805599 /note="source:INTACT1604F_F75_scaffold_10-int 1 5572" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(26804955..26813596) /locus_tag="TCM_015213" /note="dbxref CacaoGD:Thecc1EG015213" mRNA complement(join(26804955..26806493,26806585..26806981, 26809124..26809189,26809298..26809551,26809743..26810011, 26810152..26810367,26813562..26813596)) /locus_tag="TCM_015213" /product="Hydroxyproline-rich glycoprotein family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015219t2" /inference="similar to AA sequence:ricco:30169.m006236" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc405t15" CDS complement(join(26805715..26806493,26806585..26806981, 26809124..26809189,26809298..26809551,26809743..26809869)) /locus_tag="TCM_015213" /note="dbxref ricco:30169.m006236; paralog of Thecc1EG015219t2" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein" /protein_id="EOY23261.1" /db_xref="TAIR:AT5G52430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I470" /translation="MAMASYVKLILGSIAFAIFWVLAVFPAVPCLPIGRTAGSLLGDA FKYLGKLLTWKSKGAKDLICRICLISAISSAFFTNDTSCMVLTEFVLKIARQKNLPPQ PFSLALASSANIGSTATPIGNPQNLWNLLSVKIDEEDSAAQFLTGDSALISNRASVST AENVSNPTGIILPFIAPPSSPASFLQSDPPSATQSLAGLLSLTSLSVNAYSPRGPASI FAIGPYAHETQLVTPPVFSALTPEPSTAPFTPPPESIQLTTPSSPEVPFAQLLASSLE SARRKAISNSGTSSPFPDRRPILEFHMGEAPKLLGFENLTTRKWCSRLGSGSLTPDGL GRGSRLGSGSVTPDGMGLGSRLGSGSLTPDGLGPPSRDGFLLGSQISEVALLTNQANG PKNDETIVDHRVSFELSGEDVARCLESKSLLPSRTVSEYPKDLVAEGRIERDGIKKDL ESSCELFIRETSNETVEKASGKAEEEHSYQKHRSVTLGSIKEFNFDNTKGEASDKPTI RSEWWANEKFARKEARPGNSWTFFPMFRPGVR" mobile_element 26811424..26811668 /note="source:scaffold_4_CACTA_0482 6077 6332" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(26813571..26814151,26814332..26814521, 26814672..26816041,26816289..26816491)) /locus_tag="TCM_015214" /product="Divalent ion symporter isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006237.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015210t1" /inference="similar to AA sequence:frave:gene13226" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04389t00001; alternateUTRof:Thecc1EG015214t1; inference alignment:Newbler:10:TSA:cgbaP2_g04389t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1330t5" mRNA complement(join(26813622..26814151,26814332..26814521, 26814672..26816041,26816289..26816510)) /locus_tag="TCM_015214" /product="Divalent ion symporter isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006237.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015210t1" /inference="similar to AA sequence:frave:gene13226" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04389t00001" mRNA complement(join(26813848..26814151,26814332..26814521, 26814672..26815791)) /locus_tag="TCM_015214" /product="Divalent ion symporter isoform 3" /inference="alignment:exonerate- protein:2:ricco:30169.m006237.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015210t1" /inference="similar to AA sequence:frave:gene13226" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1334t2_C2; inference alignment:Newbler:10:TSA:cgbaP2_g04389t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1330t5" CDS complement(join(26813889..26814151,26814332..26814521, 26814672..26815865)) /locus_tag="TCM_015214" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene13226; paralog of Thecc1EG015210t1" /codon_start=1 /product="Divalent ion symporter isoform 1" /protein_id="EOY23256.1" /db_xref="TAIR:AT1G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B2B0" /translation="MAMASSVKVVLGSIAFAIFWVLAVFPAVPFLPVGRTAGSLLGAM LMVLFRVITPDQAYDAIDLPILGLLFGTMVVSVYLERADMFKYLGKLLAWKSKGAKDL ICRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATP IGNPQNLVIAVQSKISFGDFLIGILPAMLVGVLVNALLLLCMYWRLLSVQKDEEDPSG AAVAEEDVSSHRFSPATMSHFSSLNPQEWNSTLDSKNVMRSPNANGSTAHVETLRNRG NSADQNEIQRVPSGSIDSARNSNASKEATTDDHSHGKEEPVALKMIALTDSLQDVCSV QSSEEKENLPRRWKRRFWKFSVFFVTMGMLISLLMGLNMSWTAITAALALIVLDFQDA RPCLEKVSYSLLIFFCGMFITVDGFNKSGIPSTLWDLMEPYAKINHVSGIAILAIVIL GLSNLASNVPTVLLLGGRVAASAAAISASDEKKAWLMLAWVSTVAGNLSLLGSAANLI VCEQARRAPQLGYTLSFWKHLKFGVPSTLIVTAIGLTLFR" CDS complement(join(26813889..26814151,26814332..26814521, 26814672..26815865)) /locus_tag="TCM_015214" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene13226; paralog of Thecc1EG015210t1" /codon_start=1 /product="Divalent ion symporter isoform 1" /protein_id="EOY23257.1" /db_xref="TAIR:AT1G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B2B0" /translation="MAMASSVKVVLGSIAFAIFWVLAVFPAVPFLPVGRTAGSLLGAM LMVLFRVITPDQAYDAIDLPILGLLFGTMVVSVYLERADMFKYLGKLLAWKSKGAKDL ICRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATP IGNPQNLVIAVQSKISFGDFLIGILPAMLVGVLVNALLLLCMYWRLLSVQKDEEDPSG AAVAEEDVSSHRFSPATMSHFSSLNPQEWNSTLDSKNVMRSPNANGSTAHVETLRNRG NSADQNEIQRVPSGSIDSARNSNASKEATTDDHSHGKEEPVALKMIALTDSLQDVCSV QSSEEKENLPRRWKRRFWKFSVFFVTMGMLISLLMGLNMSWTAITAALALIVLDFQDA RPCLEKVSYSLLIFFCGMFITVDGFNKSGIPSTLWDLMEPYAKINHVSGIAILAIVIL GLSNLASNVPTVLLLGGRVAASAAAISASDEKKAWLMLAWVSTVAGNLSLLGSAANLI VCEQARRAPQLGYTLSFWKHLKFGVPSTLIVTAIGLTLFR" CDS complement(join(26813889..26814151,26814332..26814521, 26814672..26815736)) /locus_tag="TCM_015214" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene13226; paralog of Thecc1EG015210t1" /codon_start=1 /product="Divalent ion symporter isoform 3" /protein_id="EOY23258.1" /db_xref="TAIR:AT1G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B2B0" /translation="MLMVLFRVITPDQAYDAIDLPILGLLFGTMVVSVYLERADMFKY LGKLLAWKSKGAKDLICRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFL LALASSANIGSSATPIGNPQNLVIAVQSKISFGDFLIGILPAMLVGVLVNALLLLCMY WRLLSVQKDEEDPSGAAVAEEDVSSHRFSPATMSHFSSLNPQEWNSTLDSKNVMRSPN ANGSTAHVETLRNRGNSADQNEIQRVPSGSIDSARNSNASKEATTDDHSHGKEEPVAL KMIALTDSLQDVCSVQSSEEKENLPRRWKRRFWKFSVFFVTMGMLISLLMGLNMSWTA ITAALALIVLDFQDARPCLEKVSYSLLIFFCGMFITVDGFNKSGIPSTLWDLMEPYAK INHVSGIAILAIVILGLSNLASNVPTVLLLGGRVAASAAAISASDEKKAWLMLAWVST VAGNLSLLGSAANLIVCEQARRAPQLGYTLSFWKHLKFGVPSTLIVTAIGLTLFR" mobile_element complement(26816867..26817502) /note="source:CACAO_on_E168_scaffold_10 529 1136" /mobile_element_type="transposon:TIR/hAT" gene complement(26817526..26825313) /locus_tag="TCM_015215" /note="dbxref CacaoGD:Thecc1EG015215" mRNA complement(join(26817526..26817977,26818063..26818233, 26818873..26819054,26819618..26819707,26819809..26819899, 26820240..26820339,26820601..26820746,26824993..26825313)) /locus_tag="TCM_015215" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(26817774..26817977,26818063..26818233, 26818873..26819054,26819618..26819707,26819809..26819899, 26820240..26820339,26820601..26820746,26824993..26824995)) /locus_tag="TCM_015215" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23262.1" /translation="MDNQMRQTIGCGVKRGKLYYLDLVSKSLDKLGQALKVDGHEEEK KKYATRMTWVCFMKSKGEVNLLFQKFHGMVCTQYNAHVQHLYTFISINATSWHLEHFD EFFYSTLLIKRGEYQEEVQTLDYEVHFAKERELPEHGNQNVDTFAPVAKLNTVRVLLS LAANLDWPLQQFNVKNAFLHRELSEDVYMDLPPRCMMPEKYSQKSMEAYIDVESMEAV DDRRSIFGYFAFVGGNLVKVKNRMLLDALVQRLNLELWHLKDKNPVQHDRTKHVKVDK IFIKEKLDELIVELPKIRSKDQLVDILTKAVSSRVFSKFLDKLGMCDIYAPT" mobile_element 26821038..26823120 /note="source:CACAO_M_E14113_F106_scaffold_3 10690 12779" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(26822862..26823937) /locus_tag="TCM_015216" /note="dbxref CacaoGD:Thecc1EG015216" mRNA complement(join(26822862..26823538,26823665..26823937)) /locus_tag="TCM_015216" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene07727" /note="quality class is medium-expresste, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7214t1" CDS complement(join(26823131..26823538,26823665..26823862)) /locus_tag="TCM_015216" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23263.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVW7" /translation="MKRYIRLPTTGDIWKAIFKAFHDGADELQVFALNYKAFFVKQNG RALSVYYGKVTEIFSQLDHCDKEPIPELEECYALVRHESVRRTTMNGDFEKFEASAMV ARIDLLKTSKIKQSLAIIRPLMVPTNPPTNVPIVIKLVILKVDALKSWGILNGGIIAV IDEKGIPKRSLLLQWLKQRQRMRLMKKPRHWQHSQVMVVRS" mobile_element complement(26824379..26824833) /note="source:CACAO_on_E2_scaffold_1 14 519" /mobile_element_type="transposon:TIR/hAT" mobile_element 26824831..26825161 /note="source:scaffold_10_CACTA_0130 7925 8248" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26825155..26826331 /note="source:scaffold_10_CACTA_0130 6701 7861" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26828999..26829335) /note="source:INTACT461_F221_scaffold_3-int 1 408" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(26829168..26834839) /locus_tag="TCM_015217" /note="dbxref CacaoGD:Thecc1EG015217" mRNA complement(join(26829168..26829584,26830862..26831051, 26831159..26832425)) /locus_tag="TCM_015217" /product="Divalent ion symporter isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g047080.2.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015211t1" /inference="similar to AA sequence:ricco:30169.m006237" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5435t1" mRNA complement(join(26829198..26829584,26830862..26831051, 26831159..26832596,26834810..26834839)) /locus_tag="TCM_015217" /product="Divalent ion symporter isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g047080.2.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015211t1" /inference="similar to AA sequence:ricco:30169.m006237" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5435t1; alternateUTRof:Thecc1EG015217t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5435t1" CDS complement(join(26829316..26829584,26830862..26831051, 26831159..26832340)) /locus_tag="TCM_015217" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006237; paralog of Thecc1EG015211t1" /codon_start=1 /product="Divalent ion symporter isoform 1" /protein_id="EOY23264.1" /db_xref="TAIR:AT1G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81915" /translation="MDMASPVDVVLGSIAFAVFWVLAVFPAVPYMPIGRTAGSLLGGL LMVLFGVMTPDQAYDAIDLPIIGLLFGTMVVSIYLERADMFKYLEKLLSWKSMGPKDL ICRICLISAISSSLFTNDTTCVILTEFVLKIARQHNLPPYPFLLALATASNIGSAATP IGNPQNLVIAFQSKISFGDFLIGILPAMLAGLIVNALLLLCMYWRLLSIPIDEEDAIG KVVADENRIFPCDSPATMLHSSSLNSQEWNSILETMSPQISPKTNTNTAYVDTLKNRE SFAESEMIQMLSKSAVESNAVMITVTSVGSSERSEAIPLLSEQHRVRAPVFVESSKPV GKENLATRWKRIMWKPCVYLVTLGMLISFLMDFNMSWTAITAAIALIVLDFNDAQPCL EKVSYPLLVFFCGMFATVAGFNRTGIPSTLWDLVEPYAKINDVFGIAVLAIVILVLSN LASNVPTVLLLGCPVALSASAISATHEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQ ARHAPVGYNLTFWKHLKFGVPSTLIVTAIGLALLKNEI" CDS complement(join(26829316..26829584,26830862..26831051, 26831159..26832340)) /locus_tag="TCM_015217" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006237; paralog of Thecc1EG015211t1" /codon_start=1 /product="Divalent ion symporter isoform 1" /protein_id="EOY23265.1" /db_xref="TAIR:AT1G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81915" /translation="MDMASPVDVVLGSIAFAVFWVLAVFPAVPYMPIGRTAGSLLGGL LMVLFGVMTPDQAYDAIDLPIIGLLFGTMVVSIYLERADMFKYLEKLLSWKSMGPKDL ICRICLISAISSSLFTNDTTCVILTEFVLKIARQHNLPPYPFLLALATASNIGSAATP IGNPQNLVIAFQSKISFGDFLIGILPAMLAGLIVNALLLLCMYWRLLSIPIDEEDAIG KVVADENRIFPCDSPATMLHSSSLNSQEWNSILETMSPQISPKTNTNTAYVDTLKNRE SFAESEMIQMLSKSAVESNAVMITVTSVGSSERSEAIPLLSEQHRVRAPVFVESSKPV GKENLATRWKRIMWKPCVYLVTLGMLISFLMDFNMSWTAITAAIALIVLDFNDAQPCL EKVSYPLLVFFCGMFATVAGFNRTGIPSTLWDLVEPYAKINDVFGIAVLAIVILVLSN LASNVPTVLLLGCPVALSASAISATHEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQ ARHAPVGYNLTFWKHLKFGVPSTLIVTAIGLALLKNEI" mobile_element complement(26830308..26830353) /note="source:CACAO_Mariner_E38_scaffold_2 1204 1249" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(26830594..26830833) /note="source:CACAO_Mariner_E38_scaffold_2 975 1202" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(26838559..26842572) /locus_tag="TCM_015219" /note="dbxref CacaoGD:Thecc1EG015219" mRNA complement(join(26838559..26840269,26842063..26842572)) /locus_tag="TCM_015219" /product="Hydroxyproline-rich glycoprotein family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006236" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015213t1" /inference="similar to AA sequence:ricco:30169.m006236" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01563t00001" mRNA complement(join(26838813..26840269,26842051..26842203)) /locus_tag="TCM_015219" /product="Hydroxyproline-rich glycoprotein family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006236" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015213t1" /inference="similar to AA sequence:ricco:30169.m006236" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc405t6; inference alignment:Newbler:10:TSA:cgbaL_g01563t00001" CDS complement(join(26838905..26840269,26842063..26842155)) /locus_tag="TCM_015219" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006236; paralog of Thecc1EG015213t1" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein isoform 1" /protein_id="EOY23266.1" /db_xref="TAIR:AT5G52430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I470" /translation="MRSVNDSVETVNAAATAIVSADSRVQPTTVQKKRWGSCWGLYWC FGSQKNSKRIGHAVLVPEPVVPGASVSTAENVSNPTGIILPFIAPPSSPASFLQSDPP SATQSPAGLLSLTSLSVNAYSPRGPASIFAIGPYAHETQLVTPPVFSALTTEPSTAPF TPPPESVQLTTPSSPEVPFAQLLTSSLERARRNSGINQKFGLSHYEFQSYQIYPGSPG GNLISPGSAISNSGTSSPFPDRRPILEFRMGEAPKLLGFENFTTRKWGSRLGSGSLTP DGLGQGSRLGSGSVTPDGMGLGSRLGSGSLTPDGLGPASRDGFLVGSQISEVALLANP ANGPKNDETIVDHRVSFELSGEDVAPCLESKSLLPSRAVSEYPKDLVAEGRKERDGIK KDLESSCELFIRETSNETVEKASGEAEEEHSYQKHRSVTLGSIKEFNFDNTKGEASDK PTIRSEWWANEKVAGKEARPGNSWTFFPMLQPEVS" CDS complement(join(26838905..26840269,26842051..26842155)) /locus_tag="TCM_015219" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006236; paralog of Thecc1EG015213t1" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein isoform 2" /protein_id="EOY23267.1" /db_xref="TAIR:AT5G52430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I470" /translation="MRSVNDSVETVNAAATAIVSADSRVQPTTVQVHVYKKRWGSCWG LYWCFGSQKNSKRIGHAVLVPEPVVPGASVSTAENVSNPTGIILPFIAPPSSPASFLQ SDPPSATQSPAGLLSLTSLSVNAYSPRGPASIFAIGPYAHETQLVTPPVFSALTTEPS TAPFTPPPESVQLTTPSSPEVPFAQLLTSSLERARRNSGINQKFGLSHYEFQSYQIYP GSPGGNLISPGSAISNSGTSSPFPDRRPILEFRMGEAPKLLGFENFTTRKWGSRLGSG SLTPDGLGQGSRLGSGSVTPDGMGLGSRLGSGSLTPDGLGPASRDGFLVGSQISEVAL LANPANGPKNDETIVDHRVSFELSGEDVAPCLESKSLLPSRAVSEYPKDLVAEGRKER DGIKKDLESSCELFIRETSNETVEKASGEAEEEHSYQKHRSVTLGSIKEFNFDNTKGE ASDKPTIRSEWWANEKVAGKEARPGNSWTFFPMLQPEVS" gene 26846700..26855601 /locus_tag="TCM_015220" /note="dbxref CacaoGD:Thecc1EG015220" mRNA join(26846700..26847064,26847188..26847309, 26854339..26854398,26854489..26854591,26854912..>26854950) /locus_tag="TCM_015220" /product="Bacterial sec-independent translocation protein mttA/Hcf106, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028894001" /inference="similar to AA sequence:Phytozome:POPTR_0012s12910.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc602t2; inference alignment:Newbler:10:TSA:cgbaB_g00416t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc607t5_C2" mRNA join(26846700..26847064,26847188..26847309, 26854339..26854398,26854489..26854657,26854884..26854949) /locus_tag="TCM_015220" /product="Bacterial sec-independent translocation protein mttA/Hcf106, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028894001" /inference="similar to AA sequence:Phytozome:POPTR_0012s12910.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc602t5; inference alignment:Newbler:10:TSA:cgbaB_g00416t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc607t5_C2" mRNA join(26846725..26847064,26847188..26847309, 26854339..26854398,26854489..26854657,26854922..26855068, 26855149..26855601) /locus_tag="TCM_015220" /product="Bacterial sec-independent translocation protein mttA/Hcf106, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028894001" /inference="similar to AA sequence:Phytozome:POPTR_0012s12910.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00416t00001; inference alignment:Newbler:10:TSA:cgbaB_g00416t00001" CDS join(26846833..26847064,26847188..26847309, 26854339..26854398,26854489..26854657,26854922..26855068, 26855149..26855210) /locus_tag="TCM_015220" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Bacterial sec-independent translocation protein mttA/Hcf106, putative isoform 1" /protein_id="EOY23268.1" /db_xref="Phytozome:POPTR_0012s12910.1" /db_xref="TAIR:AT5G52440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94G16" /translation="MTTIMVVASPISTSTFLCTSSVSSKSVSCSLSPLISYPRASSIR FSTLFQQLGSAYFSPWSGLKHLGISISPKSLKLEKRGRRKGRVVHASLFGVGAPEALV IGVVALLVFGPKGLAEVARNLGKTLREFQPTIRELQEVSREFKSTLEREIGLDEMPSS TQTTLKRNSPYISNSIPTPSPVTNTEESGTKADPNGTPSVNKAYTSEEYLKVTEEQLK ASASQQQDQTASPAESQLESQNQQEATAKETASAMPPSQKPESET" CDS join(26846833..26847064,26847188..26847309, 26854339..26854398,26854489..26854591,26854912..>26854949) /locus_tag="TCM_015220" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Bacterial sec-independent translocation protein mttA/Hcf106, putative isoform 3" /protein_id="EOY23270.1" /db_xref="Phytozome:POPTR_0012s12910.1" /db_xref="TAIR:AT5G52440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XH75" /translation="MTTIMVVASPISTSTFLCTSSVSSKSVSCSLSPLISYPRASSIR FSTLFQQLGSAYFSPWSGLKHLGISISPKSLKLEKRGRRKGRVVHASLFGVGAPEALV IGVVALLVFGPKGLAEVARNLGKTLREFQPTIRELQEVSREFKSTLEREIGLDEMPSS TQTTLKRNSPYITNCRWYSIREQGL" CDS join(26846833..26847064,26847188..26847309, 26854339..26854398,26854489..26854657,26854884..26854894) /locus_tag="TCM_015220" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Bacterial sec-independent translocation protein mttA/Hcf106, putative isoform 2" /protein_id="EOY23269.1" /db_xref="Phytozome:POPTR_0012s12910.1" /db_xref="TAIR:AT5G52440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94G16" /translation="MTTIMVVASPISTSTFLCTSSVSSKSVSCSLSPLISYPRASSIR FSTLFQQLGSAYFSPWSGLKHLGISISPKSLKLEKRGRRKGRVVHASLFGVGAPEALV IGVVALLVFGPKGLAEVARNLGKTLREFQPTIRELQEVSREFKSTLEREIGLDEMPSS TQTTLKRNSPYISNSIPTPSPVTNTEESGTKADPKTQ" mobile_element complement(26847593..26852672) /note="source:INTACT707_F2_scaffold_1-int 594 5711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26852655..26852980 /note="source:CACAO_M_E49809_F2_scaffold_7 488 810" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26857213..26860966) /locus_tag="TCM_015221" /note="dbxref CacaoGD:Thecc1EG015221" mRNA complement(join(26857213..26858627,26860064..26860506, 26860650..26860966)) /locus_tag="TCM_015221" /product="HXXXD-type acyl-transferase family protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006232" /inference="similar to AA sequence:ricco:30169.m006232" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06901t00001" CDS complement(join(26857743..26858627,26860064..26860506, 26860650..26860680)) /locus_tag="TCM_015221" /note="dbxref ricco:30169.m006232" /codon_start=1 /product="HXXXD-type acyl-transferase family protein" /protein_id="EOY23271.1" /db_xref="TAIR:AT5G23940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDB6" /translation="MQPQLHQRSVSEVGKKEEMAKVKITSKNHVKPCKIIGRKECQLV TFDLPYLAFYYNQKLLFYKGGEFEDKVEKLKDGLRVVLEEFYQLGGKLGKDEEGVFRV DYDDDMDGVEVLEATAEGISVDELAADEGTSSLKDLIPYNGVLNLEGQNRPLLSVQLT KLKDGLAMGCAFNHAILDGTSTWHFMSSWAQICSGSNSISVQPFLERTKARNTRVKLD LSLPPNPVESTNGDANQGPQLREKLFRFSEAAIDKIKSKVNSNPPSDGSKPFSTFQSL SVHIWHHVTQARNLKPEDYTVFTVFADCRKRVDPPMPESYFGNLIQAIFTVTAAGLLL ANPPEFGASIVQKAIEAHNSKAIDERNKEWEAAPKIFQFKDAGVNCVAVGSSPRFKVY DVDFGWGKPEGVRSGSNNRFDGMVYLYQGKAGGRSIDVEITLEAGAMEKLEKDKEFLM EV" mobile_element complement(26861049..26861608) /note="source:INTACT135F_F90_scaffold_2-int 13385 14005" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(26861050..26862267) /note="source:scaffold_2_CACTA_0244 13508 14705" /mobile_element_type="transposon:TIR/CACTA" gene complement(26861122..26868355) /locus_tag="TCM_015222" /note="dbxref CacaoGD:Thecc1EG015222" mRNA complement(join(26861122..26861854,26863015..26863072, 26864116..26865188,26866182..26866261,26866404..26866429, 26867400..26867734,26868246..26868355)) /locus_tag="TCM_015222" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006231" /inference="similar to AA sequence:ricco:30169.m006231" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1425t1" CDS complement(join(26861673..26861854,26863015..26863072, 26864116..26865188,26866182..26866261,26866404..26866429, 26867400..26867734,26868246..26868273)) /locus_tag="TCM_015222" /note="dbxref ricco:30169.m006231" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23272.1" /db_xref="TAIR:AT3G49070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6J9" /translation="MVCRRQRIRSLLLNLRPQYCLAQKISQSLWTLPGDPAIHPCFQT ASQRLHRRPTSKKPPCSGGGGGWGGAEAAMKINLGSRKVEIRAKRAGDKLLQTLIMGY LQMASTDHGFIQPILGPKYLTTFEANKFTEILFSRSQMKKRIGARFRKFLSCTGASGA NSSVIPRSIDVREEYANAFRTESYNDFWTRVLAISHIDSATCISPIDSTTAARLSSYR LFAEHLLDPDQPTVSRILTLIQNRPTTHSLLLDYFSQTANASLLCGLLLKDIDHTRVK YRSFRTSFQALEIAQFSNGNQFLGIVTRLIEFSNSPNPFLSTAPSSSRVRVIQAGCCD LLERLESSRDKARAKLHLINSLQHGSGVFLVALTASLTIIVASHALALVVAAPGLIAA SLELASMRRLARESAQLDAAAKGTYILNRDLDTISRLVARLNDELEDMSAMVKFWLDR GEDRLQASGEVARQLKKNDANFTQQLDELEEHLYLCFMTINRARNLVVREILDPGPRT TRTPDLGTDFVVIVGFLVSVVKRGKGYTGDLAKFSTQRPDLAAESIGSGASRSDPTVG SGTPQPDPVAGKRRSAAVVARSGHMVR" gene 26868125..26868668 /locus_tag="TCM_015223" /note="dbxref CacaoGD:Thecc1EG015223" mRNA 26868125..26868668 /locus_tag="TCM_015223" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene04568.2" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS 26868150..26868512 /locus_tag="TCM_015223" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23273.1" /translation="MTMATEKTREWAWLPKNVLDQVLDKFLPLSYYIGFAAVCKPWRD VALDQKRWRIQTCCKQLPLLTIPTKDNSQLSRARFIQHHGQETPQLPTKRSIQSKVLR VFTRLGHVCGGRYSYTCL" gene complement(26869720..26870952) /locus_tag="TCM_015225" /note="dbxref CacaoGD:Thecc1EG015225" mRNA complement(26869720..26870952) /locus_tag="TCM_015225" /product="Calcium-dependent lipid-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g24890.1" /inference="similar to AA sequence:Phytozome:Glyma09g24890.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc986t8; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc11357t1" CDS complement(26870057..26870890) /locus_tag="TCM_015225" /codon_start=1 /product="Calcium-dependent lipid-binding family protein" /protein_id="EOY23274.1" /db_xref="Phytozome:Glyma09g24890.1" /db_xref="TAIR:AT5G23950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C8Y4" /translation="MASPLEIEVTLSSAEALKNVNWRHGPIRPYVVVWVDPKNKCSSK VDEEGDTCPIWDETLVIPLPGPIYDDSTLFVDVVHAGSEEDTKPLIGSAKLKLRDVLD DAGFGERHKKTLHLKRPSGRPQGKVDVKVLIQEPRYYARDPYHAPPYGVPPPASRDYP APPAYGYSYAQAPSPQNPYYNVAPPAGYPNSAYNYNAQPAYGQAPYGEGSGGYYGHEE KKKSKFGGMGTGLAVGAVAGALGGLALAEGVDALEDHFEDKVAEKVEEDLGYDDGGDD F" mobile_element 26871182..26872057 /note="source:INTACT135F_F90_scaffold_2-int 12870 13766" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26871861..26872080 /note="source:scaffold_9_CACTA_0932 3100 3313" /mobile_element_type="transposon:TIR/CACTA" assembly_gap 26872081..26882080 /estimated_length=10000 /gap_type="between scaffolds" gene 26882081..26883885 /locus_tag="TCM_015226" /note="dbxref CacaoGD:Thecc1EG015226" mRNA join(26882081..26882134,26882282..26882386, 26883113..26883158,26883235..26883303,26883456..26883885) /locus_tag="TCM_015226" /product="RRNA 2'-O-methyltransferase fibrillarin 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006228" /inference="similar to AA sequence:ricco:30169.m006228" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9245t1" CDS join(26882130..26882134,26882282..26882386, 26883113..26883158,26883235..26883303,26883456..26883632) /locus_tag="TCM_015226" /note="dbxref ricco:30169.m006228" /codon_start=1 /product="RRNA 2'-O-methyltransferase fibrillarin 2" /protein_id="EOY23275.1" /db_xref="TAIR:AT4G25630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A6NHQ2" /translation="MIVLFSQSVPVQYLYSSFILLYAYDELYSDSPSRLHGPLEILQP THFSYPYPARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFK PFEQVTLEPFERDHACVVGGYRMPKKQKAGQ" gene complement(26884760..26889484) /locus_tag="TCM_015227" /note="dbxref CacaoGD:Thecc1EG015227" mRNA complement(join(26884760..26885253,26885623..26885682, 26885984..26886070,26886292..26886410,26886501..26886739, 26887109..26887165,26887571..26888196,26888978..26889484)) /locus_tag="TCM_015227" /product="Detoxifying efflux carrier 35 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13218" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005303t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400052144" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1285t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1285t3" CDS complement(join(26885140..26885253,26885623..26885682, 26885984..26886070,26886292..26886410,26886501..26886739, 26887109..26887165,26887571..26888196,26888978..26889259)) /locus_tag="TCM_015227" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005303t1" /codon_start=1 /product="Detoxifying efflux carrier 35 isoform 1" /protein_id="EOY23276.1" /db_xref="Phytozome:PGSC0003DMP400052144" /db_xref="TAIR:AT4G25640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JTB2" /translation="METTPLLNGSPPTTLTLLENGDYGPARSFKEVKSVFWIETVKMW KIAGPIGFQIMCQYGTMSVTNIFVGHIGNIELSAVTIALAVIGTFSFGFMLGMGSALE TLCGQAFGAGQIHMLGVYMQRSWIILLSSCFIILPFYIFATPLLKLLGQEDEIANLAG KFAILIIPQLFSLAITFPTQKFLQAQSKVNVLAWIGFVTLIFHVGILWLFLFVFDWGT TGAAIAYDITSWVIALAQVAYVIFWSNEGWHGFSWLAFKEIWAFVRLSISSALMLCLE VWYMMSMILLVGHLNNAVIAVGSLSICMNLNGWEAMLFIGINAAMSVRVSNELGLGHP RAAKYSVYVTVLQSLLIGLLCMVAIIITRDHFAVIFTSSEEMQRAVAHLAYLLGVTMV LNSVQPVISGVAIGGGWQTLVAYINLGCYYVFGLPLGFLLGYTANLGVMGLWGGMIAG IGLQTLLLLLVLFRTNWNKEVEQTTERMKKWGGQDISTDKASRCCHDFIQKEAAKLLE RIQQEGQAEISTDQGSREQ" mRNA complement(join(<26885226..26885253,26885984..26886070, 26886292..26886410,26886501..26886739,26887109..26887165, 26887571..26888196,26888978..26889484)) /locus_tag="TCM_015227" /product="Detoxifying efflux carrier 35 isoform 3" /inference="alignment:exonerate-protein:2:frave:gene13218" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005303t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400052144" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1264t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1285t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1358t2" CDS complement(join(<26885227..26885253,26885984..26886070, 26886292..26886410,26886501..26886739,26887109..26887165, 26887571..26888196,26888978..26889259)) /locus_tag="TCM_015227" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005303t1" /codon_start=1 /product="Detoxifying efflux carrier 35 isoform 3" /protein_id="EOY23278.1" /db_xref="Phytozome:PGSC0003DMP400052144" /db_xref="TAIR:AT4G25640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JTB2" /translation="METTPLLNGSPPTTLTLLENGDYGPARSFKEVKSVFWIETVKMW KIAGPIGFQIMCQYGTMSVTNIFVGHIGNIELSAVTIALAVIGTFSFGFMLGMGSALE TLCGQAFGAGQIHMLGVYMQRSWIILLSSCFIILPFYIFATPLLKLLGQEDEIANLAG KFAILIIPQLFSLAITFPTQKFLQAQSKVNVLAWIGFVTLIFHVGILWLFLFVFDWGT TGAAIAYDITSWVIALAQVAYVIFWSNEGWHGFSWLAFKEIWAFVRLSISSALMLCLE VWYMMSMILLVGHLNNAVIAVGSLSICMNLNGWEAMLFIGINAAMSVRVSNELGLGHP RAAKYSVYVTVLQSLLIGLLCMVAIIITRDHFAVIFTSSEEMQRAVAHLAYLLGVTMV LNSVQPVISGVAIGGGWQTLVAYINLGCYYVFGLPLGFLLGYTANLGVMGLWGGMIAG IGLQTLLLLLVLFRTNWNKEASRCCHDFI" mobile_element complement(26885258..26885306) /note="source:CACAO_M_E85007_F19_scaffold_10 1 49" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(26885297..26885682,26885984..26886070, 26886292..26886410,26886501..26886739,26887109..26887165, 26887571..26888196,26888815..26888853,26888978..26889484)) /locus_tag="TCM_015227" /product="Detoxifying efflux carrier 35 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13218" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005303t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400052144" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1264t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1285t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1358t2" CDS complement(join(26885602..26885682,26885984..26886070, 26886292..26886410,26886501..26886739,26887109..26887165, 26887571..26888196,26888815..26888853,26888978..26889259)) /locus_tag="TCM_015227" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005303t1" /codon_start=1 /product="Detoxifying efflux carrier 35 isoform 2" /protein_id="EOY23277.1" /db_xref="Phytozome:PGSC0003DMP400052144" /db_xref="TAIR:AT4G25640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JTB2" /translation="METTPLLNGSPPTTLTLLENGDYGPARSFKEVKSVFWIETVKMW KIAGPIGFQIMCQYGTMSVTNIFVGHIGNIELSAVTIALAVIGTFSFGFMENCCCVDF TLSIMLGMGSALETLCGQAFGAGQIHMLGVYMQRSWIILLSSCFIILPFYIFATPLLK LLGQEDEIANLAGKFAILIIPQLFSLAITFPTQKFLQAQSKVNVLAWIGFVTLIFHVG ILWLFLFVFDWGTTGAAIAYDITSWVIALAQVAYVIFWSNEGWHGFSWLAFKEIWAFV RLSISSALMLCLEVWYMMSMILLVGHLNNAVIAVGSLSICMNLNGWEAMLFIGINAAM SVRVSNELGLGHPRAAKYSVYVTVLQSLLIGLLCMVAIIITRDHFAVIFTSSEEMQRA VAHLAYLLGVTMVLNSVQPVISGVAIGGGWQTLVAYINLGCYYVFGLPLGFLLGYTAN LGVMGLWGGMIAGIGLQTLLLLLVLFRTNWNKEVEQTTERMKKWGGQDISTDKVNDSN I" mRNA complement(join(26885655..26885682,26885984..26886410, 26886501..26886739,26887109..26887165,26887571..26888196, 26888978..26889484)) /locus_tag="TCM_015227" /product="Detoxifying efflux carrier 35 isoform 4" /inference="alignment:exonerate-protein:2:frave:gene13218" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005303t1" /inference="similar to AA sequence:ricco:30169.m006227" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1264t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1285t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1358t2" CDS complement(join(26886286..26886410,26886501..26886739, 26887109..26887165,26887571..26888196,26888978..26889259)) /locus_tag="TCM_015227" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30169.m006227; paralog of Thecc1EG005303t1" /codon_start=1 /product="Detoxifying efflux carrier 35 isoform 4" /protein_id="EOY23279.1" /db_xref="TAIR:AT4G25640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JTB2" /translation="METTPLLNGSPPTTLTLLENGDYGPARSFKEVKSVFWIETVKMW KIAGPIGFQIMCQYGTMSVTNIFVGHIGNIELSAVTIALAVIGTFSFGFMLGMGSALE TLCGQAFGAGQIHMLGVYMQRSWIILLSSCFIILPFYIFATPLLKLLGQEDEIANLAG KFAILIIPQLFSLAITFPTQKFLQAQSKVNVLAWIGFVTLIFHVGILWLFLFVFDWGT TGAAIAYDITSWVIALAQVAYVIFWSNEGWHGFSWLAFKEIWAFVRLSISSALMLCLE VWYMMSMILLVGHLNNAVIAVGSLSICMNLNGWEAMLFIGINAAMSVRVSNELGLGHP RAAKYSVYVTVLQSLLIGLLCMVAIIITRDHFAVIFTSSEEMQRAVAHLAYLLGVTMV LNSVQPVISGVAIGGGWQTLVAYINLGCYYVFGLPLGFLLGYTANLGVMV" mobile_element complement(26888893..26888948) /note="source:CACAO_M_E69306_F123_scaffold_9 4939 4994" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(26890111..26890301) /note="source:CACAO_on_E453_scaffold_2 2747 2945" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(26891158..26891239) /note="source:scaffold_2_CACTA_0248 14085 14167" /mobile_element_type="transposon:TIR/CACTA" gene 26905048..26907904 /locus_tag="TCM_015228" /note="dbxref CacaoGD:Thecc1EG015228" mRNA 26905048..26907904 /locus_tag="TCM_015228" /product="Scarecrow-like protein 8, putative" /inference="alignment:exonerate- protein:2:ricco:30169.m006225" /inference="similar to AA sequence:ricco:30169.m006225" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04948t00001" CDS 26905435..26907321 /locus_tag="TCM_015228" /note="dbxref ricco:30169.m006225" /codon_start=1 /product="Scarecrow-like protein 8, putative" /protein_id="EOY23280.1" /db_xref="TAIR:AT5G52510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FYR7" /translation="MASGFSGGGPDFYGGIAGRSMANTGGMSNNQPTAPYRTQIPGIF MDPTSQIVNRAAPNFIGKRTLADFQTQQHQNNHPGLNSLYLRSVKPRTYQHTSPISPL SPIDFSANLSPDVSSNFSSSSSCMSQRYGVPLLQQLRPQQLPLGTTSGTTIQVVNPGL SGVPYMNPAQTRVVQQQDPEKKMMNQLQELEKQLLDDDNDEEGDAVSVITNTNSEWSE TIQNLISSSSPNNPIAPSPTSSTTSSSSSTSSVASPASTCSKQTIMEAASAISEGKTD VVNEILTRLAQVANSKGNSEQRLMECMLLALKSRVNSAENPPPVAELFSKEHAAATQL LYDLSPCFKLGFLAANLAILDATLDQPNSNKLHVIDFDIGQGGQYINLLHALSERGSG QPVMVKITAIADNAGDERLKMVGDKLSQIAERFGVCLKFNVVASLKLSDLSREALGCE PDEPLAVNFAFKLYQMPDESVSVENPRDELLRRVKGLAPRVVALVEQEMNTNTAPFTS RVGEACGYYGALIDSIESTVSRDKAERVKLEEGLLRKIANSVACEGRDRVERCEVFGK WRARMSMAGFEFKPLSQSVAESMRARLSSGNRVNPGFTVKEENGGVSFGWMGRTLTVA SAWR" mobile_element complement(26908918..26908978) /note="source:scaffold_6_CACTA_0706 1432 1497" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26908933..26908981) /note="source:INTACT296_F13_scaffold_9-int 13168 13216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26908937..26909008 /note="source:CACAO_M_E5892_F98_scaffold_2 1929 1992" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26910771..26913474 /locus_tag="TCM_015229" /note="dbxref CacaoGD:Thecc1EG015229" mRNA join(26910771..26911205,26911322..26911436, 26911935..26912038,26912125..26912565,26912674..26912729, 26912832..26913474) /locus_tag="TCM_015229" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g30160.1" /inference="similar to AA sequence:ricco:30169.m006224" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7244t1" CDS join(26911082..26911205,26911322..26911436, 26911935..26912038,26912125..26912565,26912674..26912729, 26912832..26913041) /locus_tag="TCM_015229" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006224" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23281.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIU4" /translation="MLQVQFSCGPRPVREPNKERKIGFHQSPIRLVHITMFRKRKETR PIVDRGKESDLSTGNLKKNWLKKQERPAEFRPGSHTTIAVWNLESAQKIREMALRAGR LIQDQNLNVHYNGVSVGGQKKVSKAPKKGGTAGRKPLGDLSNSVNPIQKQAPKKENGH GFSIADKGTITTSKIPVDANRKNSVSNASERVLQNDSRKALSDISNSVKPCMRVTAEK NLNAKRSIVIEEECFLHNHQECIKAQKQAMHMDEFLQMVGLDKDFSRQSTLSKTPPIS NKTKPKSSLKSLEPLEIPGLLIEDQSPLKHNLCSKLVSPSATRTPEPPNHFVHWADHD IVSFRLIETPYVPKH" mRNA join(26911305..26911436,26911946..26912038, 26912125..26912565,26912674..26912729,26912832..26913453) /locus_tag="TCM_015229" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g30160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019923t2" /inference="similar to AA sequence:ricco:30169.m006224" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7244t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7244t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1298t3_C2" mRNA join(<26911308..26911436,26911935..26912038, 26912125..26912565,26912684..26912729,26912832..26913453) /locus_tag="TCM_015229" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g30160.1" /inference="similar to AA sequence:ricco:30169.m006224" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog weak, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7244t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7244t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1298t3_C2" CDS join(<26911309..26911436,26911935..26912038, 26912125..26912565,26912684..26912729,26912832..26912847) /locus_tag="TCM_015229" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006224" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY23282.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIU4" /translation="KSRTETRPIVDRGKESDLSTGNLKKNWLKKQERPAEFRPGSHTT IAVWNLESAQKIREMALRAGRLIQDQNLNVHYNGVSVGGQKKVSKAPKKGGTAGRKPL GDLSNSVNPIQKQAPKKENGHGFSIADKGTITTSKIPVDANRKNSVSNASERVLQNDS RKALSDISNSVKPCMRVTAEKNLNAKRSIVIEEECFLHNHQECIKAQKQAMHMDEFLQ MVGLDKDNQHFQRHLQYQTRQSLRVP" mRNA join(26911412..26911436,26911935..26912038, 26912125..26912729,26912832..26913467) /locus_tag="TCM_015229" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g30160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019923t2" /inference="similar to AA sequence:ricco:30169.m006224" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1075t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7244t1" CDS join(26911981..26912038,26912125..26912729, 26912832..26913041) /locus_tag="TCM_015229" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30169.m006224; paralog of Thecc1EG019923t2" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY23284.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIU4" /translation="MALRAGRLIQDQNLNVHYNGVSVGGQKKVSKAPKKGGTAGRKPL GDLSNSVNPIQKQAPKKENGHGFSIADKGTITTSKIPVDANRKNSVSNASERVLQNDS RKALSDISNSVKPCMRVTAEKNLNAKRSIVIEEECFLHNHQECIKAQKQAMHMDEFLQ MVGLDKGKENLNLSGLTIQMSKSSLWFSLPKTPNFECMFFCLDFSRQSTLSKTPPISN KTKPKSSLKSLEPLEIPGLLIEDQSPLKHNLCSKLVSPSATRTPEPPNHFVHWADHDI VSFRLIETPYVPKH" CDS join(26911981..26912038,26912125..26912565, 26912674..26912729,26912832..26913041) /locus_tag="TCM_015229" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006224; paralog of Thecc1EG019923t2" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY23283.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIU4" /translation="MALRAGRLIQDQNLNVHYNGVSVGGQKKVSKAPKKGGTAGRKPL GDLSNSVNPIQKQAPKKENGHGFSIADKGTITTSKIPVDANRKNSVSNASERVLQNDS RKALSDISNSVKPCMRVTAEKNLNAKRSIVIEEECFLHNHQECIKAQKQAMHMDEFLQ MVGLDKDFSRQSTLSKTPPISNKTKPKSSLKSLEPLEIPGLLIEDQSPLKHNLCSKLV SPSATRTPEPPNHFVHWADHDIVSFRLIETPYVPKH" gene 26913597..26920091 /locus_tag="TCM_015230" /note="dbxref CacaoGD:Thecc1EG015230" mRNA join(26913597..26914167,26914261..26914317, 26914412..26914522,26914691..26914777,26914872..26914985, 26915073..26915295,26915758..26915789,26916069..26916206, 26917447..26917608,26917984..26918183,26919115..26919198, 26919319..26920091) /locus_tag="TCM_015230" /product="Class II aaRS and biotin synthetases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006591" /inference="similar to AA sequence:ricco:30169.m006591" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7252t3" CDS join(26913721..26914167,26914261..26914317, 26914412..26914522,26914691..26914777,26914872..26914985, 26915073..26915295,26915758..26915789,26916069..26916206, 26917447..26917608,26917984..26918183,26919115..26919198, 26919319..26919460) /locus_tag="TCM_015230" /note="dbxref ricco:30169.m006591" /codon_start=1 /product="Class II aaRS and biotin synthetases superfamily protein" /protein_id="EOY23285.1" /db_xref="TAIR:AT5G52520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FYR6" /translation="MRVSTLGTFPLQKPHLPEESSKTVTKQPLPEMVSSLRLLTLTSL FSPSFTRRTTVSLRRRLHLRPPLAAGFSVQSAASSPPETEDRLDHKKSSRAQDPANTD RVITPRSQDFNAWYLDVIANAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETG HSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMF TQWIHSYRDLPLLINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEALQM IDVYTEFAYEQAAIPVIAGRKSKVETFAGADKTYTIEAMMGDRKALQAGTSHNLGQNF SRAFGTQVMDTLALSESKSKIRKFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDSG LMLPPRIAPIQVVIVPIWKKADEKTGVLNAASSVAGTLKTAGLKVKLDDADQRTPGWK FNFWEMKGVPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDRLD EIQSSLLQRAISFRDSNIVDVSSYEELKEVISLGKWARGPWSASDADELRVKEETGAT IRCFPFEQPQGTKTCLMTGNSAKEVAIFAKSY" mobile_element complement(26920843..26920908) /note="source:CACAO_M_E1149_F297_scaffold_1 1061 1114" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26921595..26936370 /locus_tag="TCM_015231" /note="dbxref CacaoGD:Thecc1EG015231" mRNA join(26921595..26923051,26923231..26923320, 26923556..26923882,26923968..26926234,26926319..26927598, 26928354..26929137) /locus_tag="TCM_015231" /product="Dentin sialophosphoprotein-related, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13211" /inference="similar to AA sequence:Phytozome:POPTR_0004s07720.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7299t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7299t1" mRNA join(26921595..26921967,26923231..26923320, 26923556..26923882,26923968..26926234,26926319..26927598, 26928354..26929137) /locus_tag="TCM_015231" /product="Dentin sialophosphoprotein-related, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13211" /inference="similar to AA sequence:Phytozome:POPTR_0004s07720.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:PASA:2:TSA:puevd3b014715t1a4; alternateUTRof:Thecc1EG015231t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7299t1" CDS join(26923688..26923882,26923968..26926234, 26926319..26927558) /locus_tag="TCM_015231" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Dentin sialophosphoprotein-related, putative isoform 1" /protein_id="EOY23286.1" /db_xref="Phytozome:POPTR_0004s07720.1" /translation="MMSTVGLELTSFINPDLTWKTVSKGNRSGTRRTRKLGAKNLTMG MGLADKNARTAEDVTVSESEKLGVDVLGRRFSDKVEQVPIKKRRFMFRSTSPPPPLTP LLHLEASGQDVDFQSASGKNSGSNSAQRRRLKKTDILTKSTVAVDDGKFSEVINDVED FSGIEILAAAACSDSMGDDVTENEGNTLLEASTQERIESSASAIPLEETTASLETPCC SPKDSVNEGKTEGSSSQDNSSAALQTACCSPKVSVMEGKTEGSSSQDNSSAALQTACC SPKVSVMEGKTEGSSSQDNSSAALHESLGDRDNPTAGRSIPLPDDRLLWDLNLSMDAW PCDGGNIDSQKDAVDNTSVRSEELQTKEPQDIENDTMNRVVSSDVDGNDECNKMTSDL KIMPVGTDDLSGEKQESEGCSGSIENKTEHVPVPVVDAENSLICAAAETNAPTEAGNM DQCLSHSPLPGLDKSTPGSEGNRETSFSTHNIELNTVGCISEAEVGKTVRGENAQVEE SDVASPYVPVLETVANDVQKTSVNEDDKDHGIDSGLHDVKSFAQDLDNPRPLEPPEDE HANGTEEMDTCHPSPKSEDMSISDDYIVEAMDRTDGASSTYTAQTDSDTHVRSEALLQ KSSRNFVATSGAGEFSAHEACRNYVNGPTSCLDKANLNDLSNESHDSAVSQDKVLTVG IGTHSEVQAGYDSQFEDGELRESDVHCWEEAEQVDYDTEFEEERSFGLEAESGEKKLQ AERGSSPDVTGNFKYCETGDALRENSVSLKMRTVEVSDGETKKTDCLDGSNVRDYDFK VTKRELLSRVEGSLSSDAVHRSRSDNFDGSFPRAEREAGSDKFMGRDRSASHMRGRSP VGGHYFNPSASYWDSKRQNSPIYHGPYNFGRPRPKSVVESRGYPMATDQASSEATGVA RPDNRINRQYVGSSNGLYRPLFRRRSPVERDDSYGMHTRMATVRDTSPDRTRFRRYPQ GFSRGIRDEYLRHIPDDGTEYFSRMPHRLGRRERSISPHGRPHYTLPYKKTRSRSRSR SPIGWLLPRDRNEGSRRRSRSPDFRSDARVDRVRLPFPKRFAADYGEEFISPPRSRIS PQRNSRMFEDRNAGLDHFRGRKSPMRMFRQGQRLDQGHPIRRSNSDDYFRHMIRPRRF PDMAGGGKGCKYEGSDDDKHGSRYEMIHRVRRYDTDGAVRRFRYNAEDSYVANNSLTV TNAIGVSSRRPDDAPRTASEDRSFKMQQP" CDS join(26923688..26923882,26923968..26926234, 26926319..26927558) /locus_tag="TCM_015231" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Dentin sialophosphoprotein-related, putative isoform 1" /protein_id="EOY23287.1" /db_xref="Phytozome:POPTR_0004s07720.1" /translation="MMSTVGLELTSFINPDLTWKTVSKGNRSGTRRTRKLGAKNLTMG MGLADKNARTAEDVTVSESEKLGVDVLGRRFSDKVEQVPIKKRRFMFRSTSPPPPLTP LLHLEASGQDVDFQSASGKNSGSNSAQRRRLKKTDILTKSTVAVDDGKFSEVINDVED FSGIEILAAAACSDSMGDDVTENEGNTLLEASTQERIESSASAIPLEETTASLETPCC SPKDSVNEGKTEGSSSQDNSSAALQTACCSPKVSVMEGKTEGSSSQDNSSAALQTACC SPKVSVMEGKTEGSSSQDNSSAALHESLGDRDNPTAGRSIPLPDDRLLWDLNLSMDAW PCDGGNIDSQKDAVDNTSVRSEELQTKEPQDIENDTMNRVVSSDVDGNDECNKMTSDL KIMPVGTDDLSGEKQESEGCSGSIENKTEHVPVPVVDAENSLICAAAETNAPTEAGNM DQCLSHSPLPGLDKSTPGSEGNRETSFSTHNIELNTVGCISEAEVGKTVRGENAQVEE SDVASPYVPVLETVANDVQKTSVNEDDKDHGIDSGLHDVKSFAQDLDNPRPLEPPEDE HANGTEEMDTCHPSPKSEDMSISDDYIVEAMDRTDGASSTYTAQTDSDTHVRSEALLQ KSSRNFVATSGAGEFSAHEACRNYVNGPTSCLDKANLNDLSNESHDSAVSQDKVLTVG IGTHSEVQAGYDSQFEDGELRESDVHCWEEAEQVDYDTEFEEERSFGLEAESGEKKLQ AERGSSPDVTGNFKYCETGDALRENSVSLKMRTVEVSDGETKKTDCLDGSNVRDYDFK VTKRELLSRVEGSLSSDAVHRSRSDNFDGSFPRAEREAGSDKFMGRDRSASHMRGRSP VGGHYFNPSASYWDSKRQNSPIYHGPYNFGRPRPKSVVESRGYPMATDQASSEATGVA RPDNRINRQYVGSSNGLYRPLFRRRSPVERDDSYGMHTRMATVRDTSPDRTRFRRYPQ GFSRGIRDEYLRHIPDDGTEYFSRMPHRLGRRERSISPHGRPHYTLPYKKTRSRSRSR SPIGWLLPRDRNEGSRRRSRSPDFRSDARVDRVRLPFPKRFAADYGEEFISPPRSRIS PQRNSRMFEDRNAGLDHFRGRKSPMRMFRQGQRLDQGHPIRRSNSDDYFRHMIRPRRF PDMAGGGKGCKYEGSDDDKHGSRYEMIHRVRRYDTDGAVRRFRYNAEDSYVANNSLTV TNAIGVSSRRPDDAPRTASEDRSFKMQQP" mRNA join(26924562..26926234,26926319..26927598, 26928354..26929732,26935143..26935220,26935310..26936370) /locus_tag="TCM_015231" /product="Dentin sialophosphoprotein-related, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene13211" /inference="similar to AA sequence:Phytozome:POPTR_0004s07720.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc794t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7299t1" CDS join(26924619..26926234,26926319..26927558) /locus_tag="TCM_015231" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Dentin sialophosphoprotein-related, putative isoform 3" /protein_id="EOY23288.1" /db_xref="Phytozome:POPTR_0004s07720.1" /db_xref="TAIR:AT5G52530.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3H6" /translation="MEGKTEGSSSQDNSSAALHESLGDRDNPTAGRSIPLPDDRLLWD LNLSMDAWPCDGGNIDSQKDAVDNTSVRSEELQTKEPQDIENDTMNRVVSSDVDGNDE CNKMTSDLKIMPVGTDDLSGEKQESEGCSGSIENKTEHVPVPVVDAENSLICAAAETN APTEAGNMDQCLSHSPLPGLDKSTPGSEGNRETSFSTHNIELNTVGCISEAEVGKTVR GENAQVEESDVASPYVPVLETVANDVQKTSVNEDDKDHGIDSGLHDVKSFAQDLDNPR PLEPPEDEHANGTEEMDTCHPSPKSEDMSISDDYIVEAMDRTDGASSTYTAQTDSDTH VRSEALLQKSSRNFVATSGAGEFSAHEACRNYVNGPTSCLDKANLNDLSNESHDSAVS QDKVLTVGIGTHSEVQAGYDSQFEDGELRESDVHCWEEAEQVDYDTEFEEERSFGLEA ESGEKKLQAERGSSPDVTGNFKYCETGDALRENSVSLKMRTVEVSDGETKKTDCLDGS NVRDYDFKVTKRELLSRVEGSLSSDAVHRSRSDNFDGSFPRAEREAGSDKFMGRDRSA SHMRGRSPVGGHYFNPSASYWDSKRQNSPIYHGPYNFGRPRPKSVVESRGYPMATDQA SSEATGVARPDNRINRQYVGSSNGLYRPLFRRRSPVERDDSYGMHTRMATVRDTSPDR TRFRRYPQGFSRGIRDEYLRHIPDDGTEYFSRMPHRLGRRERSISPHGRPHYTLPYKK TRSRSRSRSPIGWLLPRDRNEGSRRRSRSPDFRSDARVDRVRLPFPKRFAADYGEEFI SPPRSRISPQRNSRMFEDRNAGLDHFRGRKSPMRMFRQGQRLDQGHPIRRSNSDDYFR HMIRPRRFPDMAGGGKGCKYEGSDDDKHGSRYEMIHRVRRYDTDGAVRRFRYNAEDSY VANNSLTVTNAIGVSSRRPDDAPRTASEDRSFKMQQP" gene complement(26928395..26932334) /locus_tag="TCM_015232" /note="dbxref CacaoGD:Thecc1EG015232" mRNA complement(join(26928395..26928604,26928753..26929811, 26930008..26930335,26930759..26930993,26931110..26931301, 26931393..26931495,26931589..26932334)) /locus_tag="TCM_015232" /product="Ferric reduction oxidase 2" /inference="alignment:exonerate- protein:2:ricco:30174.m008640.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005288t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028874001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc663t5" CDS complement(join(26928465..26928604,26928753..26929811, 26930008..26930335,26930759..26930993,26931110..26931301, 26931393..26931495,26931589..26931775)) /locus_tag="TCM_015232" /note="paralog of Thecc1EG005288t1" /codon_start=1 /product="Ferric reduction oxidase 2" /protein_id="EOY23289.1" /db_xref="Phytozome:GSVIVT01028874001" /db_xref="TAIR:AT1G01580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P92949" /translation="MLSKKVVPENIMKMVRAAIKLFLVLVFLAYMVLWIMMPTNLYFE HWMPEIRAKTKSTYFGNQGASMLIYTFPILFIATMGCIYLHLGKKDADHNRHRMVQTS RLATLKQPAIVRGPLGIVSWMELSFLTMFVALLVWSTSSYLNHMFVHIDQMAAKSGLL VWEAKLEMSGLALGLVGNICLAFLFFPVTRGSSVLRLIGLTSEASVKYHIWIGHIAMT IFTAHGLCFIIFWAKTKQMSEVLKWDKVDVSNVAGEIALVSGLAMWATSLPQIRRKMF ELFYYTHHLYILFVVFFVFHVGFSYSCIMLPGFYLFLIDRCLRFLQSQQRISLVSARI LPCETVELNFSKSPELSYTPTSMVFVNVRGISKLQWHPFTITSSSNMNPDKLSIVIKS EGSWSSELYQKLSSPSPIDHLEVSIEGPYGPASTPFLRYLAKKNELCPCFCSDKSDKA FVPTSYQANNNMFYMRCRHDTLVMLSGGSGFTPLISIIRELLFKASSSSDRIPQIFLI CAFKKSVDLTMLELLLPVSGATVDISCLKFQIEAYVTRDKEPATDNRRPLQNVWFKPN ALDAPVSAILGPNSWLWFGVIISSSFVIFLLLLGILTRYYIYPIDHNTGMIYAGSARA ALNMLFLCTAIAMTVTAVFLWSKKQNGKGTRQIQSMDTPPKTSPAWFHNADRELESLP HQSLLQATKVHYGERPDLKKILFERKGTSVGVIVSGPREMRQEVAAICSSGLADNLHF ESISFVW" gene complement(26933790..26938173) /locus_tag="TCM_015233" /note="dbxref CacaoGD:Thecc1EG015233" mRNA complement(join(26933790..26934085,26934215..26934893, 26934981..26935221,26935311..26935638,26936345..26936579, 26936909..26937085,26937193..26937295,26937418..26937994, 26938062..26938173)) /locus_tag="TCM_015233" /product="Ferric reduction oxidase 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028873001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005288t1" /inference="similar to AA sequence:ricco:30169.m006631" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:PASA:2:TSA:puevd3b014717t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7233t2" mRNA complement(join(26933790..26934085,26934184..26934893, 26934981..26935221,26935311..26935638,26936345..26936579, 26936909..26937085,26937193..26937295,26937418..26937994, 26938062..26938173)) /locus_tag="TCM_015233" /product="Ferric reduction oxidase 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028873001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005288t1" /inference="similar to AA sequence:ricco:30169.m006631" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7233t2" CDS complement(join(26933946..26934085,26934184..26934893, 26934981..26935221,26935311..26935638,26936345..26936579, 26936909..26937085,26937193..26937295,26937418..26937568)) /locus_tag="TCM_015233" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006631; paralog of Thecc1EG005288t1" /codon_start=1 /product="Ferric reduction oxidase 4 isoform 1" /protein_id="EOY23290.1" /db_xref="TAIR:AT5G23980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLW2" /translation="MSSHAMMRMIFLVVFLGWLTIWVMLPTKLYKYTWRPKLDSKLNS TYYAAQGTNLLLFSFPMMFIAAFGCAYLHFQKKSRASNSKSSGAVAFLKRPVLVMAPL GIVSALDLIFSAMFVALMIWSLANYLYVSFGHLHMDGVGEKIWQAKFRSVSLRLGYIG NICWAFLFFPVTRASSLLPLVGLTSESSIKYHIWLGHVSNILFVAHTIGFIIYWAMTD QMAEMIEWSRTYVSNVAGVIAIVIAIPMWVTSMPRFRRKMFEVFFYTHHLYLVYIVFY VLHVGDTYFCMILPGIFLFLIDRFLRFLQSRHRARLLSARVLPCGVVELNFCKAPGLY YNPTSVLFVNVPRISKLQWHPFTIASNCNTEQDKLSVIIKSEGSWSQKLYQEISSSNL DHLEISTEGPYGPLSDHFLRHESLVLVCGGSGITPFISIIQEIIFQSQKPDFKVPRVV MICAFKHSADLAMLDLLLPISGTPAQICQLQLQIEAYITSEKDQPNADTHEPLQTIWF KPSPLDSPISATLGPNNWLWLGAVISSSFIMFLLLLSIVTGYYIYPIDHNTEKIYHFS YRALWDMFLVCACIFVVSSLVFLWRKKQNAWEINQIQNTEVPTPTTSPGSWFCGADRE LESLPHQSLVQATKVHFGSRPDLKKILFDIKESDVGVLACGPRKMRHEVAKICASGLA DNLQFEYISFTL" CDS complement(join(26934053..26934085,26934215..26934893, 26934981..26935221,26935311..26935638,26936345..26936579, 26936909..26937085,26937193..26937295,26937418..26937568)) /locus_tag="TCM_015233" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006631; paralog of Thecc1EG005288t1" /codon_start=1 /product="Ferric reduction oxidase 4 isoform 2" /protein_id="EOY23291.1" /db_xref="TAIR:AT5G23980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLW2" /translation="MSSHAMMRMIFLVVFLGWLTIWVMLPTKLYKYTWRPKLDSKLNS TYYAAQGTNLLLFSFPMMFIAAFGCAYLHFQKKSRASNSKSSGAVAFLKRPVLVMAPL GIVSALDLIFSAMFVALMIWSLANYLYVSFGHLHMDGVGEKIWQAKFRSVSLRLGYIG NICWAFLFFPVTRASSLLPLVGLTSESSIKYHIWLGHVSNILFVAHTIGFIIYWAMTD QMAEMIEWSRTYVSNVAGVIAIVIAIPMWVTSMPRFRRKMFEVFFYTHHLYLVYIVFY VLHVGDTYFCMILPGIFLFLIDRFLRFLQSRHRARLLSARVLPCGVVELNFCKAPGLY YNPTSVLFVNVPRISKLQWHPFTIASNCNTEQDKLSVIIKSEGSWSQKLYQEISSSNL DHLEISTEGPYGPLSDHFLRHESLVLVCGGSGITPFISIIQEIIFQSQKPDFKVPRVV MICAFKHSADLAMLDLLLPISGTPAQICQLQLQIEAYITSEKDQPNADTHEPLQTIWF KPSPLDSPISATLGPNNWLWLGAVISSSFIMFLLLLSIVTGYYIYPIDHNTEKIYHFS YRALWDMFLVCACIFVVSSLVFLWRKKQNAWEINQIQNTEVPTPTTSPGSWFCGADRE LESLPHQSLVQATKKYCSTLKNQT" mRNA complement(join(26934058..26934893,26934981..26935221, 26935311..26935638,26936345..26936558,26936909..26937085, 26937193..26937295,26937418..26937443)) /locus_tag="TCM_015233" /product="Ferric reduction oxidase 4 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028873001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015232t1" /inference="similar to AA sequence:ricco:30169.m006631" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2949t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7233t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4067t6" CDS complement(join(26934149..26934893,26934981..26935221, 26935311..26935638,26936345..26936558,26936909..26937085, 26937193..26937266)) /locus_tag="TCM_015233" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006631; paralog of Thecc1EG015232t1" /codon_start=1 /product="Ferric reduction oxidase 4 isoform 3" /protein_id="EOY23292.1" /db_xref="TAIR:AT5G23980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLW2" /translation="MMFIAAFGCAYLHFQKKSRASNSKSSGAVAFLKRPVLVMAPLGI VSALDLIFSAMFVALMIWSLANYLYVSFGHLHMDGVGEKIVSLRLGYIGNICWAFLFF PVTRASSLLPLVGLTSESSIKYHIWLGHVSNILFVAHTIGFIIYWAMTDQMAEMIEWS RTYVSNVAGVIAIVIAIPMWVTSMPRFRRKMFEVFFYTHHLYLVYIVFYVLHVGDTYF CMILPGIFLFLIDRFLRFLQSRHRARLLSARVLPCGVVELNFCKAPGLYYNPTSVLFV NVPRISKLQWHPFTIASNCNTEQDKLSVIIKSEGSWSQKLYQEISSSNLDHLEISTEG PYGPLSDHFLRHESLVLVCGGSGITPFISIIQEIIFQSQKPDFKVPRVVMICAFKHSA DLAMLDLLLPISGTPAQICQLQLQIEAYITSEKDQPNADTHEPLQTIWFKPSPLDSPI SATLGPNNWLWLGAVISSSFIMFLLLLSIVTGYYIYPIDHNTEKIYHFSYRALWDMFL VCACIFVVSSLVFLWRKKQNAWEINQIQNTEVPTPTTSPGSWFCGADRELESLPHQSL VQATKVHFGSRPDLKSKLILLLRLSH" gene complement(26938133..26942105) /locus_tag="TCM_015234" /note="dbxref CacaoGD:Thecc1EG015234" mRNA complement(join(26938133..26938939,26939092..26939162, 26939247..26939333,26939648..26939803,26940555..26940665, 26940922..26940961,26941281..26941294,26941412..26941638, 26941753..26942105)) /locus_tag="TCM_015234" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028873001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015235t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028873001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7237t1" CDS complement(join(26938901..26938939,26939092..26939162, 26939247..26939333,26939648..26939803,26940555..26940665, 26940922..26940961,26941281..26941294,26941412..26941638, 26941753..26942060)) /locus_tag="TCM_015234" /note="paralog of Thecc1EG015235t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23293.1" /db_xref="Phytozome:GSVIVT01028873001" /db_xref="TAIR:AT5G24000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8SC50" /translation="MSSFALSLSLCPLTSPPTPSLRLSPLSFHQDLLTASTARRVPNL ALPCQNTSSNKPLLSPLLIPKTRNVEVRSQLRYPYPIISPDDHWGTWTALFVIGAFGL RSEETKIGSMVSAALVSTLVGLAASNLGIIPFEAPAYSLFMGFLLPLAVPLLLFRADS RRVIRSTGTLLLAFLLGSVMSRNLRLCFFEIHCLKTVSTIVGTLVAFLMVPMRSLGPD NWKIASALMGSYIGGSVNYIAISEALGVSPSVLAARVAVDNVICAMYFMILFALASKV DPEASKSTNDVEMNLDSDSGGKVPVLQTATALAISFLISTLFPTQFANLAPAGDTLAL ALIQVFFAVVGANGSI" gene complement(26942148..26945022) /locus_tag="TCM_015235" /note="dbxref CacaoGD:Thecc1EG015235" mRNA complement(join(26942148..26942807,26943001..26943242, 26943475..26943630,26943751..26943861,26944082..26944308, 26944436..26945022)) /locus_tag="TCM_015235" /product="Keratin-associated protein 5-4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028872001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015234t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028872001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1164t3_C2" CDS complement(join(26942484..26942807,26943001..26943242, 26943475..26943630,26943751..26943861,26944082..26944308, 26944436..26944776)) /locus_tag="TCM_015235" /note="paralog of Thecc1EG015234t1" /codon_start=1 /product="Keratin-associated protein 5-4" /protein_id="EOY23294.1" /db_xref="Phytozome:GSVIVT01028872001" /db_xref="TAIR:AT5G52540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8SC50" /translation="MASQLPFLHITRAAPHSPELQSSNSRLFRQNLHPISRVINSYPQ HSSLSSSSSSSSSLSLYRSQTFLSSHWLHQNPTANRPVTVKSQLNFPLISPNDQWGTW TALFAIGAFGIWSEKTKIGSALSGALVSTLIGLAASNLGIISCEAKAYSTVLEFLLPL AVPLLLFRADLRRVIKSTGKLLLAFLLGSVATTVGTALAYLIVPMRALGQDSWKIAAA LMGRHIGGAVNYVAISNALGVSPSVLAAGLAADNVICAVYFTTLFALASKVPPETSTS PEDVAMVEGSESGSKLPVLQIATALAVSFSICKLGAYLTKYFGIPGGSLPAVTAIVVI LATVFPTQFGRLAPAGEAMALILMQVFFTVVGASGNIWNVINTAPSIFMFALVQIAIH LALILGLGKLFRFDLKLLLIASNANVGGPTTACGMATAKGWSSMVVPGILAGIFGIAI ATFLGIVFGVTVLKYM" mobile_element 26945519..26945647 /note="source:scaffold_5_CACTA_0600 8048 8163" /mobile_element_type="transposon:TIR/CACTA" gene complement(26946225..26948769) /locus_tag="TCM_015236" /note="dbxref CacaoGD:Thecc1EG015236" mRNA complement(join(26946225..26946531,26946605..26946731, 26946815..26946888,26947498..26947599,26948661..26948769)) /locus_tag="TCM_015236" /product="RNA recognition motif and CCHC-type zinc finger domains containing protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006629" /inference="similar to AA sequence:ricco:30169.m006629" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7250t2" CDS complement(join(26946274..26946531,26946605..26946731, 26946815..26946888,26947498..26947500)) /locus_tag="TCM_015236" /note="dbxref ricco:30169.m006629" /codon_start=1 /product="RNA recognition motif and CCHC-type zinc finger domains containing protein" /protein_id="EOY23295.1" /translation="MDPRSFIDEKSESRLYIGNLDLRITEGALIKMFSPYGKIISEDF LWHTRGPKRGEPRGFAFIQYSMKEEAKLAKEKMHGRLACGRPLVVRLASEKYLEEAAH NSSKAGGEAIKSGTAGSTSGQMSRSAKIAAIKNKLKALDEERGSAKKQKAS" mobile_element complement(26948921..26950047) /note="source:INTACT135F_F90_scaffold_2-int 12866 13999" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26950415..26951090 /note="source:CACAO_MITE53_scaffold_3 60 831" /mobile_element_type="transposon:TIR/MITE" gene 26952889..26956542 /locus_tag="TCM_015238" /note="dbxref CacaoGD:Thecc1EG015238" mRNA 26952889..26956542 /locus_tag="TCM_015238" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s01660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041936t1" /inference="similar to AA sequence:ricco:30075.m001150" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7248t1" CDS 26953420..26955966 /locus_tag="TCM_015238" /note="dbxref ricco:30075.m001150; paralog of Thecc1EG041936t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY23296.1" /db_xref="TAIR:AT5G24010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLW0" /translation="MSYIFSLSLEEPKRNHFNPPSMDAKRILLFSLTFLSLLYFSASF LPTNNFLVNCGSNANTSFYNRIFLADSAKPGSLFLSAERSVSLTDRSPSPNTPILYHT ARVFTTDSSYKFNIKKNGTGIHLVRLHFSPFQAQNFNLASAKFNVVANGFLLLSGFSA NSVLLKEYLLEIDGNVLEIMFSPVGDSGFAFVNGIEVFSVPKDFIIDDGARSVIANGI EEYKNLTSRVLETVHRINVGGSKLTPFNDTLWRTWIPDDGFLVFKPAAKRAVSTHLPN YQSGGATREIAPDNVYMSAQQMNRDNSSLNGRFNITWDFPVGSQGAPHLVRLHFCDIV SPALNQLYFDVYINNYSAYRDLDLSMLTYHVLSSPVYIDFVADSDDSGVIRISVGPSD LSTPSKINAILNGVEIMRLVNLKGSHVGSNKKNVWILVGSIVGGIVIFCLAAVAIVLA FKCKKKKPKPPRRAESAGWTPLRVYGGSSYSRMSEGTVTTSPGPNGYHSLRIPFVDIQ TATNNFDKSLIIGMGGFGMVYKGVLRDNTKVAVKRGVPGSRQGLPEFQTEITVLSKIR HRHLVSLVGYCEEQSEMILVYEYMEKGPLKNHLYCSKHPPLSWKQRLEICIGSARGLH YLHTGSAQGIIHRDIKSTNILLDENFVAKVADFGLSRSGPCLNETHVSTGVKGSFGYL DPEYFRRQQLTDKSDVYSFGVVLFEVLCARPAVDPLLTREQVNLAEWAMQWQKKGMLG KIIDPHLVGQIKPCCLKKYGETAEKCLAEYGVDRPTMGDVLWNLEYALQLQESGPEEP REGSNMNGMDCPTTSITPSSNARTEKDDGSGSSDITTSQVFSQLMTKEGR" gene complement(26956946..26957856) /locus_tag="TCM_015239" /note="dbxref CacaoGD:Thecc1EG015239" mRNA complement(26956946..26957856) /locus_tag="TCM_015239" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.29 coverage" CDS complement(26957405..26957605) /locus_tag="TCM_015239" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23297.1" /translation="MKLRLVQAGTTLARTKKWWGLALARLKAGLPSCSIQSGFASENV GTVGLGPMGPVQLIGTLKIKER" gene 26958387..26962847 /locus_tag="TCM_015240" /note="dbxref CacaoGD:Thecc1EG015240" mRNA join(26958387..26958987,26960113..26960374, 26961017..26961084,26961814..26962205,26962301..26962438, 26962546..26962771) /locus_tag="TCM_015240" /product="PPPDE thiol peptidase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028868001" /inference="similar to AA sequence:Phytozome:POPTR_0004s07790.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7372t4" mRNA join(26958542..26958987,26960113..26960374, 26961017..26961084,26961814..26962847) /locus_tag="TCM_015240" /product="PPPDE thiol peptidase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028868001" /inference="similar to AA sequence:Phytozome:POPTR_0004s07790.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01747t00001; alternateUTRof:Thecc1EG015240t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7372t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc529t8" mRNA join(26958542..26958987,26960113..26960374, 26961017..26961084,26961814..26962205,26962301..26962847) /locus_tag="TCM_015240" /product="PPPDE thiol peptidase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028868001" /inference="similar to AA sequence:Phytozome:POPTR_0004s07790.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01747t00002; alternateUTRof:Thecc1EG015240t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7372t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc529t8" CDS join(26958853..26958987,26960113..26960374, 26961017..26961084,26961814..26962191) /locus_tag="TCM_015240" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="PPPDE thiol peptidase family protein, putative isoform 1" /protein_id="EOY23298.1" /db_xref="Phytozome:POPTR_0004s07790.1" /db_xref="TAIR:AT4G25680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3G9" /translation="MTEVVLHIYDVTNSGSDKTNSTIVQINKIFKDGIGLGGIFHSAV QVYGDEEWSFGFCEQGSGVFSCPSSKNPMYTYREFMVLGRTNFSIFKVNQILRELSRE WPGSSYDLLSKNCNHFCDEFCKRLGVQKLPGWVNRFANAGDAAIEIAENTAVRLRQAK TEIVSASKVAYRFLVGVTSGSSGSSDSPGNSNRGTPRFQAAWFKNLITTGAKPSSSSE IETQDGNILQQHQQQNSARTVRQNSQDSERPLRQSFQDSERPLQQNSQDSEQPLQQNS RHEI" CDS join(26958853..26958987,26960113..26960374, 26961017..26961084,26961814..26962191) /locus_tag="TCM_015240" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="PPPDE thiol peptidase family protein, putative isoform 1" /protein_id="EOY23299.1" /db_xref="Phytozome:POPTR_0004s07790.1" /db_xref="TAIR:AT4G25680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3G9" /translation="MTEVVLHIYDVTNSGSDKTNSTIVQINKIFKDGIGLGGIFHSAV QVYGDEEWSFGFCEQGSGVFSCPSSKNPMYTYREFMVLGRTNFSIFKVNQILRELSRE WPGSSYDLLSKNCNHFCDEFCKRLGVQKLPGWVNRFANAGDAAIEIAENTAVRLRQAK TEIVSASKVAYRFLVGVTSGSSGSSDSPGNSNRGTPRFQAAWFKNLITTGAKPSSSSE IETQDGNILQQHQQQNSARTVRQNSQDSERPLRQSFQDSERPLQQNSQDSEQPLQQNS RHEI" CDS join(26958853..26958987,26960113..26960374, 26961017..26961084,26961814..26962191) /locus_tag="TCM_015240" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="PPPDE thiol peptidase family protein, putative isoform 1" /protein_id="EOY23300.1" /db_xref="Phytozome:POPTR_0004s07790.1" /db_xref="TAIR:AT4G25680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3G9" /translation="MTEVVLHIYDVTNSGSDKTNSTIVQINKIFKDGIGLGGIFHSAV QVYGDEEWSFGFCEQGSGVFSCPSSKNPMYTYREFMVLGRTNFSIFKVNQILRELSRE WPGSSYDLLSKNCNHFCDEFCKRLGVQKLPGWVNRFANAGDAAIEIAENTAVRLRQAK TEIVSASKVAYRFLVGVTSGSSGSSDSPGNSNRGTPRFQAAWFKNLITTGAKPSSSSE IETQDGNILQQHQQQNSARTVRQNSQDSERPLRQSFQDSERPLQQNSQDSEQPLQQNS RHEI" gene complement(26962733..26963929) /locus_tag="TCM_015241" /note="dbxref CacaoGD:Thecc1EG015241" mRNA complement(join(26962733..26963358,26963901..26963929)) /locus_tag="TCM_015241" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc529t3" CDS complement(26962885..26963100) /locus_tag="TCM_015241" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23301.1" /translation="MSLESISSNFSSFLYKGIIRYLNSPKFKVNKDRISINKVCLWLM LLGFFFLFEKKKPKSQKQIIKISIRRA" gene complement(26963434..26966261) /locus_tag="TCM_015242" /note="dbxref CacaoGD:Thecc1EG015242" mRNA complement(join(26963434..26964479,26964734..26964940, 26966095..26966261)) /locus_tag="TCM_015242" /product="Transport protein SEC31" /inference="alignment:exonerate- protein:2:ricco:30169.m006627" /inference="similar to AA sequence:ricco:30169.m006627" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00513t00001" CDS complement(join(26963862..26964479,26964734..26964850)) /locus_tag="TCM_015242" /note="dbxref ricco:30169.m006627" /codon_start=1 /product="Transport protein SEC31" /protein_id="EOY23302.1" /db_xref="TAIR:AT4G25670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6D1" /translation="MGKCKGCGKLGRMLPRDGPVNTYHSALLCSPVVSVWDCIACNKV QPVVRKAKKKQVKDELDRIKQAEKKKRRLEKALATSAAIRSELEKKKQKKKEEQQRLD EEGAAIAEAVALHVLLGEDSDDSCKIMLNKEEGFNRWDYASNFDLFMGRGRACLPHQA HTNCEGWVSNAYTAGCEWPELGNNDWSFSYGAYGRDLHAPYLEDEGWGSAGLSAGLIA AQAVSALQITEDAEVDTIVLNGMLRG" gene 26966417..26968123 /locus_tag="TCM_015245" /note="dbxref CacaoGD:Thecc1EG015245" mRNA 26966417..26968123 /locus_tag="TCM_015245" /product="Septum site-determining protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006626" /inference="similar to AA sequence:ricco:30169.m006626" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc57t1" CDS 26966814..26967800 /locus_tag="TCM_015245" /note="dbxref ricco:30169.m006626" /codon_start=1 /product="Septum site-determining protein" /protein_id="EOY23303.1" /db_xref="TAIR:AT5G24020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MBA2" /translation="MLSLQLCSANPKPALLNPSFKPFLNPRTLKPPKPYEKRKLIAIS SVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLR NLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPIGFGGK ALVWLVDALKAREEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR VTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLALLGVIPEDSEVIRST NRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGG" gene complement(26968062..26977117) /locus_tag="TCM_015246" /note="dbxref CacaoGD:Thecc1EG015246" mRNA complement(join(26968062..26968826,26968925..26969003, 26969382..26969477,26969553..26969622,26969705..26969955, 26970206..26970280,26970832..26971021,26971263..26971339, 26971446..26971541,26971940..26971990,26972130..26972218, 26972493..26972563,26972730..26972935,26973021..26973765, 26977074..26977117)) /locus_tag="TCM_015246" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028865001" /inference="similar to AA sequence:Phytozome:GSVIVT01028865001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7263t7" mRNA complement(join(26968185..26968826,26968925..26969003, 26969382..26969622,26969705..26969955,26970206..26970280, 26970832..26971021,26971263..26971339,26971446..26971541, 26971940..26971990,26972130..26972218,26972493..26972563, 26972730..26972935,26973021..26973389)) /locus_tag="TCM_015246" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028865001" /inference="similar to AA sequence:Phytozome:GSVIVT01028865001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b014727t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7263t7" CDS complement(join(26968750..26968826,26968925..26969003, 26969382..26969477,26969553..26969622,26969705..26969955, 26970206..26970280,26970832..26971021,26971263..26971339, 26971446..26971541,26971940..26971990,26972130..26972218, 26972493..26972563,26972730..26972935,26973021..26973452)) /locus_tag="TCM_015246" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23304.1" /db_xref="Phytozome:GSVIVT01028865001" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6C9" /translation="MIFKKNVGSLSPLGLDFGAQGKNNQITSLSRFPGKTNTVLHRIE TPAMSVADSCCFRGNFHDEVKTHFHLLKSKSPLWRQNILFQKCIFAWEEKRRISLLAT RATKREQECKLNLKYQKQKEWIHFVGVGGSGLSALALLAVKHGFEVSGSDLTWTSFMD GLQQAGVRLHVGHSVSNIQSKNGSRFPNAVVVSSAIPQDNVEILHAKSIGVPVYKRDF WLAKLTEHHKLIAVSGSHGKSTTAGLLAYVLKSMGDDLTAVVGAHVPQFPGGNIIWGD GQHFVLEADEYDGCFLGLSPYIAVITNVDWEHVDIFQDEEAVKTLYRRLLKKIRMGGH LIICGDSLGAYSLLDYTREGTKPEHSIGTMSIPSSDIDGYDVTTYGISSTNEWHASSI CPNSQGGSDYVLCHRGQPLAEISLQIPGVHNVLNSVAVIATVMALLHDQRPTRELISS LKLHLSNFIGLSRRFELIGEIHGCHIYDDYAHHPTEVYVVLQAARQRFPFKRLLVVFQ PHTYSRLAVFKDDFAVALSYADYIVVTAVYSVRESGAWNVSGKDLAASIIGPPSEYIP ALEDVVDKLALEISKDPLREIVILTLGAGDINTVGPKLLHELRKRLCKAKSKH" CDS complement(join(26969529..26969622,26969705..26969955, 26970206..26970280,26970832..26971021,26971263..26971339, 26971446..26971541,26971940..26971990,26972130..26972218, 26972493..26972563,26972730..26972935,26973021..26973311)) /locus_tag="TCM_015246" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY23305.1" /db_xref="Phytozome:GSVIVT01028865001" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6C9" /translation="MSVADSCCFRGNFHDEVKTHFHLLKSKSPLWRQNILFQKCIFAW EEKRRISLLATRATKREQECKLNLKYQKQKEWIHFVGVGGSGLSALALLAVKHGFEVS GSDLTWTSFMDGLQQAGVRLHVGHSVSNIQSKNGSRFPNAVVVSSAIPQDNVEILHAK SIGVPVYKRDFWLAKLTEHHKLIAVSGSHGKSTTAGLLAYVLKSMGDDLTAVVGAHVP QFPGGNIIWGDGQHFVLEADEYDGCFLGLSPYIAVITNVDWEHVDIFQDEEAVKTLYR RLLKKIRMGGHLIICGDSLGAYSLLDYTREGTKPEHSIGTMSIPSSDIDGYDVTTYGI SSTNEWHASSICPNSQGGSDYVLCHRGQPLAEISLQIPGVHNVLNSVAVIATVMALLH DQRPTRELISSLKLHLSNFIGLSRRFELIGEIHGCHIYDDYAHHPTEVYVVLQAARQR FPFKRLLVVFQPHTYSRLAVFKDDFAVALSYADYIVVTAVQVPHPL" gene complement(26977145..26979853) /locus_tag="TCM_015247" /note="dbxref CacaoGD:Thecc1EG015247" mRNA complement(join(26977145..26977679,26977804..26977873, 26977967..26978023,26978165..26978290,26978480..26978614, 26978735..26978806,26978925..26978984,26979085..26979609)) /locus_tag="TCM_015247" /product="Beta-hydroxylase 1, 1,B1,chy1,BCH1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006624" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016325t1" /inference="similar to AA sequence:ricco:30169.m006624" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00158t00006" CDS complement(join(26977564..26977679,26977804..26977873, 26977967..26978023,26978165..26978290,26978480..26978614, 26978735..26978806,26978925..26978984,26979085..26979471)) /locus_tag="TCM_015247" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006624; paralog of Thecc1EG016325t1" /codon_start=1 /product="Beta-hydroxylase 1, 1,B1,chy1,BCH1 isoform 1" /protein_id="EOY23306.1" /db_xref="TAIR:AT4G25700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MX39" /translation="MAAGLSAAITPKPFRSFLSSHLEPKPTPLFHPLLRLQKTLYGAR RKRSFAVCFVLEEQKQSAPQIVNLAEEGSEDARDSQILIQARLAEKLARKRSERFTYL VAAVMSSFGITSMAVMAVYYRFSWQMEGGEVPLSEMFGTFALSVGAAVGMEFWARWAH RALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFNKGLVPGLCFGA GLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRKVAAAHQLHHSDKFNGVPYGLFL GPKEVEEVGGLEELEKEINRRIKSSMGERHGLVFLFEENMGQRSRIRDNDLGTESPQS QFTNIV" mRNA complement(join(<26978261..26978290,26978455..26978614, 26978735..26978806,26978925..26978984,26979085..26979853)) /locus_tag="TCM_015247" /product="Beta-hydroxylase 1, 1,B1,chy1,BCH1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006624" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016325t1" /inference="similar to AA sequence:ricco:30169.m006624" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc221t1; inference alignment:Newbler:10:TSA:cgbaL_g00158t00006" CDS complement(join(<26978262..26978290,26978455..26978614, 26978735..26978806,26978925..26978984,26979085..26979471)) /locus_tag="TCM_015247" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006624; paralog of Thecc1EG016325t1" /codon_start=1 /product="Beta-hydroxylase 1, 1,B1,chy1,BCH1 isoform 2" /protein_id="EOY23307.1" /db_xref="TAIR:AT4G25700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MX39" /translation="MAAGLSAAITPKPFRSFLSSHLEPKPTPLFHPLLRLQKTLYGAR RKRSFAVCFVLEEQKQSAPQIVNLAEEGSEDARDSQILIQARLAEKLARKRSERFTYL VAAVMSSFGITSMAVMAVYYRFSWQMEGGEVPLSEMFGTFALSVGAAVGMEFWARWAH RALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFNKGLVPGLCFGA VSLLLSVFGAWNYGVRNG" mobile_element 26983602..26983681 /note="source:scaffold_5_CACTA_0584 1899 1972" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26983609..26983701 /note="source:CACAO_M_S_E98851_F233_scaffold_8 1316 1371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26983630..26983681) /note="source:CACAO_M_E10997_F98_scaffold_2 710 761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26983680..26984631) /note="source:CACAO_Again_on_S_E217_scaffold_6 1 973" /mobile_element_type="transposon:TIR/hAT" mobile_element 26986483..26986633 /note="source:CACAO_on_E168_scaffold_10 4 171" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(26986529..26987195) /note="source:scaffold_5_CACTA_0614 1454 2067" /mobile_element_type="transposon:TIR/CACTA" gene 26987324..26987928 /locus_tag="TCM_015248" /note="dbxref CacaoGD:Thecc1EG015248" mRNA join(26987324..26987549,26987644..26987928) /locus_tag="TCM_015248" /product="Glycerol dehydrogenase large subunit, putative" /inference="alignment:exonerate-protein:2:frave:gene31825" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016326t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09780.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g17574t00001" CDS join(26987328..26987549,26987644..26987718) /locus_tag="TCM_015248" /note="paralog of Thecc1EG016326t1" /codon_start=1 /product="Glycerol dehydrogenase large subunit, putative" /protein_id="EOY23308.1" /db_xref="Phytozome:POPTR_0001s09780.1" /translation="MRRGESYGGGQSSLGYLFGSDEEPSKTLAPSTPIKAPWNDDNTT KKPPNNSSKKSSVTNNYHRAQGQNSGNFITDRPTTKVQSAPGGDSSLGYLFGHK" gene 26988949..26993570 /locus_tag="TCM_015249" /note="dbxref CacaoGD:Thecc1EG015249" mRNA join(26988949..26989387,26990936..26991271, 26991914..26992034,26992142..26992316,26992418..26992488, 26992591..26993570) /locus_tag="TCM_015249" /product="Pectin lyase-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s01220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005281t1" /inference="similar to AA sequence:ricco:30169.m006623" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7261t2" CDS join(26989376..26989387,26990936..26991271, 26991914..26992034,26992142..26992316,26992418..26992488, 26992591..26993285) /locus_tag="TCM_015249" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006623; paralog of Thecc1EG005281t1" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 1" /protein_id="EOY23309.1" /db_xref="TAIR:AT3G48950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6C6" /translation="MKSQAIETLISAIILLGLLSSSVAAYCAVRYAETIEFPALNCRK HIAVLTDFGGVGDGKTSNTQAFKAAIANLSQLAADGGAQLIVPPGKWLTGSFNLTSHF TLFVHKDAVILGAQDESEWPLLPVLPSYGRGRDAPDGRFSSLIFGTNLTDVVITGNNG TIDGQGAYWWKKFKEDKLNETRPYLIEIMYSNQIQISNLTLINSPSWNVHPIYSSDVI IQHLTILAPVDSPNTDGINPDSCTNTRIEDSFVVSGDDCIAVKSGWDQYGIKFNMPTK HLVIRRFTCISPDSATIALGSEMSGGIEDVRAEDITAINTQSGVRIKTAVGRGAYVKD IYARRMTLNTMKYVFWMTGSYGSHPDPGFDPNAFPVIKGINYRDVVADNVTYSARLEG IEKDPFTDICISNVNIKLTNKPKELQWNCTNVQGVTSRVTPEPCNLLPVKEIDCPFPE DRLPIEDVMLKTCSISGKF" mRNA join(26990661..26990704,26990936..26991271, 26991914..26992034,26992142..26992316,26992418..26992488, 26992591..26993570) /locus_tag="TCM_015249" /product="Pectin lyase-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s01220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005281t1" /inference="similar to AA sequence:ricco:30169.m006623" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:PASA:2:TSA:puevd3b014730t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7261t2" CDS join(26990681..26990704,26990936..26991271, 26991914..26992034,26992142..26992316,26992418..26992488, 26992591..26993285) /locus_tag="TCM_015249" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006623; paralog of Thecc1EG005281t1" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 2" /protein_id="EOY23310.1" /db_xref="TAIR:AT3G48950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6C6" /translation="MELSRKSQAIETLISAIILLGLLSSSVAAYCAVRYAETIEFPAL NCRKHIAVLTDFGGVGDGKTSNTQAFKAAIANLSQLAADGGAQLIVPPGKWLTGSFNL TSHFTLFVHKDAVILGAQDESEWPLLPVLPSYGRGRDAPDGRFSSLIFGTNLTDVVIT GNNGTIDGQGAYWWKKFKEDKLNETRPYLIEIMYSNQIQISNLTLINSPSWNVHPIYS SDVIIQHLTILAPVDSPNTDGINPDSCTNTRIEDSFVVSGDDCIAVKSGWDQYGIKFN MPTKHLVIRRFTCISPDSATIALGSEMSGGIEDVRAEDITAINTQSGVRIKTAVGRGA YVKDIYARRMTLNTMKYVFWMTGSYGSHPDPGFDPNAFPVIKGINYRDVVADNVTYSA RLEGIEKDPFTDICISNVNIKLTNKPKELQWNCTNVQGVTSRVTPEPCNLLPVKEIDC PFPEDRLPIEDVMLKTCSISGKF" gene complement(26993319..26995936) /locus_tag="TCM_015250" /note="dbxref CacaoGD:Thecc1EG015250" mRNA complement(join(26993319..26993843,26993956..26994165, 26994251..26994374,26994510..26994680,26994799..26994921, 26995025..26995126,26995209..26995936)) /locus_tag="TCM_015250" /product="ATP binding protein, putative" /inference="alignment:exonerate- protein:2:ricco:30169.m006621" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005277t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s01210.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3480t7" CDS complement(join(26993697..26993843,26993956..26994165, 26994251..26994374,26994510..26994680,26994799..26994921, 26995025..26995126,26995209..26995777)) /locus_tag="TCM_015250" /note="paralog of Thecc1EG005277t1" /codon_start=1 /product="ATP binding protein, putative" /protein_id="EOY23311.1" /db_xref="Phytozome:POPTR_0017s01210.1" /db_xref="TAIR:AT1G01540.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIT2" /translation="MSSEVSYLKEKLLKHTSFFGLRLWMLIVAFLILFILLVFFIISL CVIYCRRRRSYKQAPCCLPNPIAPRHNYHSPYSTSSLNRRLLPLNVSKTETNMTKPEL EVMLSDQLSTRASMTTQESLPDLEHFAKCSPAVSENWTGNHFSLREAEIVTNGFAYEN LIGHGDYGVVYRGVLLDHTRVAVKRLLSNSCQTEHFLTEAEAIGNVRHKNLVKLLGYC VEEGYRMLVYEYVNNSNLHQWLHGSLGQTRPLTWTIRLKIIHGIAKGLAYLHEDIEPQ IVHQNVKASNILLDHQWNPKISDISLSRLLGPEHSHVTSHSMIKLGYAAQDHDSIRLW DKKNDIYSFGILIMEIVTGRTPVDHNQPQVYLIDWLKSMVASKKIAHVLDPKMPEIPS IKELKRVTLVALRCADPDLDHRPRMGQVVHMLEPRDLLLNDERRARREASLRNHRQDS QTSEQDGVASDMCAGKRSYNHYEKRISIQHA" mobile_element 26995982..26996382 /note="source:scaffold_8_CACTA_0855 2009 2285" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26997156..26997409 /note="source:scaffold_8_CACTA_0855 2353 2596" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26997291..26997424 /note="source:CACAO_on_E22_A_scaffold_2 4890 5029" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(26998284..27002088) /locus_tag="TCM_015251" /note="dbxref CacaoGD:Thecc1EG015251" mRNA complement(join(26998284..26998620,26998760..26998814, 26999035..26999062,26999183..26999253,26999455..26999552, 26999744..26999861,27000558..27000621,27001011..27001075, 27001349..27001384,27001556..27001612,27001702..27002088)) /locus_tag="TCM_015251" /product="Glutaminyl cyclase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s07200.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s07200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03190t00001; inference alignment:Newbler:10:TSA:cgbaL_g03190t00001" mRNA complement(join(26998358..26998620,26998760..26998814, 26999035..26999062,26999183..26999253,26999455..26999552, 26999744..26999861,27000558..27000621,27001011..27001075, 27001349..27001384,27001556..27001612, 27001702..>27001767)) /locus_tag="TCM_015251" /product="Glutaminyl cyclase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s07200.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s07200.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06627t00001; inference alignment:Newbler:10:TSA:cgbaL_g03190t00001" CDS complement(join(26998523..26998620,26998760..26998814, 26999035..26999062,26999183..26999253,26999455..26999552, 26999744..26999861,27000558..27000621,27001011..27001075, 27001349..27001384,27001556..27001612,27001702..27001959)) /locus_tag="TCM_015251" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Glutaminyl cyclase, putative isoform 1" /protein_id="EOY23312.1" /db_xref="Phytozome:POPTR_0004s07200.1" /db_xref="TAIR:AT4G25720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84WV9" /translation="MASKSFKKKTNSKRSGSKSAASMAFSKHWYLRRIFTAISIILLV CVIVVLGVSSNTWNKLSSVNHSLHSYGYVVNEFPHDPNAFTQGLVYAGNDTLFESTGL YRHSSVRKIALRTGKVQILQKMADSYFGEGLTLLGERLFQVTWLTKIGFIYDRKNLKK SEQFTHEMDDGWGLATDGKILYGSDGTSTLYQMDPQTLKVTRKHVIKFNGQSVRYLNE LEYINGEIWANVWQTDCIVRISPNNGTILGWILLQTLRQGLIAAGYNGIDVLNGIAWD SNNNRIFVTGKLWPKLYEIKLHPAQKQYNDDVIEQLCLP" CDS complement(join(26998523..26998620,26998760..26998814, 26999035..26999062,26999183..26999253,26999455..26999552, 26999744..26999861,27000558..27000621,27001011..27001075, 27001349..27001384,27001556..27001612, 27001702..>27001767)) /locus_tag="TCM_015251" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Glutaminyl cyclase isoform 2" /protein_id="EOY23313.1" /db_xref="Phytozome:POPTR_0004s07200.1" /db_xref="TAIR:AT4G25720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84WV9" /translation="HSLHSYGYVVNEFPHDPNAFTQGLVYAGNDTLFESTGLYRHSSV RKIALRTGKVQILQKMADSYFGEGLTLLGERLFQVTWLTKIGFIYDRKNLKKSEQFTH EMDDGWGLATDGKILYGSDGTSTLYQMDPQTLKVTRKHVIKFNGQSVRYLNELEYING EIWANVWQTDCIVRISPNNGTILGWILLQTLRQGLIAAGYNGIDVLNGIAWDSNNNRI FVTGKLWPKLYEIKLHPAQKQYNDDVIEQLCLP" mobile_element complement(27003583..27003866) /note="source:scaffold_7_CACTA_0789 1859 2163" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27003892..27003980 /note="source:MITE_Unknow_3_4 235 326" /mobile_element_type="transposon:TIR/MITE" gene 27005588..27009274 /locus_tag="TCM_015252" /note="dbxref CacaoGD:Thecc1EG015252" mRNA join(27005588..27005891,27006288..27009274) /locus_tag="TCM_015252" /product="Heat shock protein 90.1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006619" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016330t1" /inference="similar to AA sequence:Phytozome:Glyma09g24410.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:PASA:2:TSA:puevd3b014733t1a3; alternateUTRof:Thecc1EG015252t2; inference alignment:Newbler:10:TSA:cgbaL_g14266t00001" mRNA join(27005588..27005891,27006288..27006429, 27006562..27009274) /locus_tag="TCM_015252" /product="Heat shock protein 90.1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006619" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016330t1" /inference="similar to AA sequence:Phytozome:Glyma09g24410.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b014733t1a2; inference alignment:Newbler:10:TSA:cgbaL_g14266t00001" mRNA join(27005648..27005891,27006288..27006429, 27006562..27006842,27006925..27009274) /locus_tag="TCM_015252" /product="Heat shock protein 90.1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006619" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016330t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s01160.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14266t00001" CDS join(27005754..27005891,27006288..27006429, 27006562..27006842,27006925..27008475) /locus_tag="TCM_015252" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016330t1" /codon_start=1 /product="Heat shock protein 90.1 isoform 1" /protein_id="EOY23314.1" /db_xref="Phytozome:POPTR_0017s01160.1" /db_xref="TAIR:AT5G52640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5KA88" /translation="MADVQMADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNA SDALDKIRFESLTDKSKLDAQPELFIRLVPDKVNKTLSIIDSGIGMTKADLVNNLGTI ARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTSKHNDDEQYIWESQAGG SFTVTRDVNGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKT TEKEISDDEDDEPKKEEEGDIEDVDEEKETKSKKKKIKEVSHEWQLINKQKPIWLRKP EEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMN NIKLYVRRVFIMDNCEELIPECLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLV KKCIEMFNEIAENKEDYNKFYEAFSKNLKLGVHEDSQNRAKLADLLRYHSTKSGDELT SLKDYVTRMKEGQKDIYYITGESKKAVENSPFLEKLKKKGYEVLFMVDAVDEYAVGQM KEYDGKKLVSATKEGLKLEDESEEEKRKKEEKKKSFEDLCKTMKDILGDKVEKVVVSD RIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRK RAEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGARIHRMLKLGLSIDEDETGGD DADMPALEECDAEASKMEEVD" CDS 27006847..27008475 /locus_tag="TCM_015252" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016330t1" /codon_start=1 /product="Heat shock protein 90.1 isoform 2" /protein_id="EOY23315.1" /db_xref="Phytozome:Glyma09g24410.1" /db_xref="TAIR:AT5G52640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5KA88" /translation="MLLPIRSLQVQCLDFVSFTKCGFYIQLEYLEERRIKDLVKKHSE FISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDIEDVDEEKETKSKKKKIKEVSHEWQ LINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKR APFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPECLGFVKGVVDSDDLPLNISRETLQ QNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYEAFSKNLKLGVHEDSQNRAKLADL LRYHSTKSGDELTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLEKLKKKGYEVLF MVDAVDEYAVGQMKEYDGKKLVSATKEGLKLEDESEEEKRKKEEKKKSFEDLCKTMKD ILGDKVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSSYMSSKKTME INPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGARIHRMLK LGLSIDEDETGGDDADMPALEECDAEASKMEEVD" CDS 27006847..27008475 /locus_tag="TCM_015252" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG016330t1" /codon_start=1 /product="Heat shock protein 90.1 isoform 2" /protein_id="EOY23316.1" /db_xref="Phytozome:Glyma09g24410.1" /db_xref="TAIR:AT5G52640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5KA88" /translation="MLLPIRSLQVQCLDFVSFTKCGFYIQLEYLEERRIKDLVKKHSE FISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDIEDVDEEKETKSKKKKIKEVSHEWQ LINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKR APFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPECLGFVKGVVDSDDLPLNISRETLQ QNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYEAFSKNLKLGVHEDSQNRAKLADL LRYHSTKSGDELTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLEKLKKKGYEVLF MVDAVDEYAVGQMKEYDGKKLVSATKEGLKLEDESEEEKRKKEEKKKSFEDLCKTMKD ILGDKVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSSYMSSKKTME INPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGARIHRMLK LGLSIDEDETGGDDADMPALEECDAEASKMEEVD" gene complement(27009368..27011422) /locus_tag="TCM_015253" /note="dbxref CacaoGD:Thecc1EG015253" mRNA complement(join(27009368..27009490,27010115..27010244, 27010377..27010653,27010979..27011027,27011117..27011422)) /locus_tag="TCM_015253" /product="RNA binding Plectin/S10 domain-containing protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006618" /inference="similar to AA sequence:Phytozome:GSVIVT01028854001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9379t2" CDS complement(join(27009413..27009490,27010115..27010244, 27010377..27010653,27010979..27011027,27011117..27011119)) /locus_tag="TCM_015253" /codon_start=1 /product="RNA binding Plectin/S10 domain-containing protein" /protein_id="EOY23317.1" /db_xref="Phytozome:GSVIVT01028854001" /db_xref="TAIR:AT4G25740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AYP4" /translation="MIIPEKNRREICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIK LMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSTKPPGRLG GPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGGDFGGDKGGAPADFQPSFRGSGGRPA FGRGGGGYGAAPSGSGFA" gene 27011676..27016598 /locus_tag="TCM_015254" /note="dbxref CacaoGD:Thecc1EG015254" mRNA join(27011676..27012099,27012446..27012544, 27012640..27012689,27013092..27013282,27013471..27013579, 27013719..27013888,27014005..27014083,27014242..27015679, 27015893..27016598) /locus_tag="TCM_015254" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028853001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1048t4" CDS join(27012026..27012099,27012446..27012544, 27012640..27012689,27013092..27013282,27013471..27013579, 27013719..27013888,27014005..27014083,27014242..27015679, 27015893..27015953) /locus_tag="TCM_015254" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23318.1" /db_xref="TAIR:AT4G01290.2" /translation="MRSENEDRCLVPQSKPEETTPEYQKTLKFAYTRDFLFSLAEFDT CKKLPTGFDSSILRELGNQSTSVLHSYHDSDAGRFQSSPSLCAWRNAEQGLLGSGVFA RVHRGVAETSDPVLKGSGFHILNRSSEPYRPPHLCKAKNYSVRESEDHYNDETFGSSD NLSQERAEEEQRRRDSFELMRNEQEMATQEKQKIICDEHKETLNLDIAIIVEDSGVDK KVANKYSKSRGAKPYDVKEGHPENPVFCSSVLVHQFREGEKKTAADQKVNDHESTKFS FGTNGIAHNLMKSASTPVSKESSMQLYGCCNPGAHSSHCLEESILSEINGRSSYDIED SQSSCSNYGEAHQHFLLLLQKGAGLTDLAESSKLNMWSLYKPYVSETGNDNNQLNKSG RVFINNFEKNLREPISGTFVKDSQSTALSGTQKDLTSMYKGDDAVESQVRLPVGENCI IPLTVNGTGPIGDAEGITLSGFAKQTGVNKRNGNLLVSNIQAKVGLNLQGGPELKNSS LSSFDELDICLPDEDSLITADDYILQQDSMFMAAGDTSSTPVNIFGRLADCGVAVGEK RFDLAGFLRPTSFHSSHDLVSLDTPFKSLRMQQSYPQLQHSQLKQGKEQGSCSKSQES IKGLRIKPKNLKACPCNLQPLQHFPTNVHLTSYQHLRAAETGFDHSGNNQLPQELPIP GYFPPHQLYGLPRVAFPQHTSNEMVCYAQDQNAMLNSSLSFKQQCYRDLESASSRHFE MGIESKADASSYYAWP" gene complement(27016593..27020983) /locus_tag="TCM_015255" /note="dbxref CacaoGD:Thecc1EG015255" mRNA complement(join(27016593..27017313,27017418..27017519, 27018278..27018337,27018426..27018535,27018621..27018725, 27018846..27019019,27019105..27019228,27019494..27019551, 27020231..27020579,27020883..27020983)) /locus_tag="TCM_015255" /product="Homeodomain-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028852001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005269t1" /inference="similar to AA sequence:ricco:30169.m006616" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b014736t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00970t00002" mRNA complement(join(27016593..27017313,27017418..27017524, 27018278..27018337,27018426..27018535,27018621..27018725, 27018846..27019019,27019105..27019228,27019494..27019551, 27020231..27020579,27020883..27020983)) /locus_tag="TCM_015255" /product="Homeodomain-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028852001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005269t1" /inference="similar to AA sequence:ricco:30169.m006616" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b014736t1a4; alternateUTRof:Thecc1EG015255t1; inference alignment:Newbler:10:TSA:cgbaB_g00970t00002" mRNA complement(join(27016677..27017024,27017418..27017524, 27018278..27018337,27018426..27018535,27018621..27018725, 27018846..27019019,27019105..27019228,27019494..27019551, 27020231..27020579,27020883..27020983)) /locus_tag="TCM_015255" /product="Homeodomain-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028852001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005269t1" /inference="similar to AA sequence:ricco:30169.m006616" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b014736t1a3; alternateUTRof:Thecc1EG015255t1; inference alignment:Newbler:10:TSA:cgbaB_g00970t00002" mRNA complement(join(27016677..27017524,27018278..27018337, 27018426..27018535,27018621..27018725,27018846..27019019, 27019105..27019228,27019494..27019551,27020231..27020579, 27020883..27020983)) /locus_tag="TCM_015255" /product="Homeodomain-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028852001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005269t1" /inference="similar to AA sequence:ricco:30169.m006616" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:PASA:2:TSA:puevd3b014736t1a5; alternateUTRof:Thecc1EG015255t1; inference alignment:Newbler:10:TSA:cgbaB_g00970t00002" mRNA complement(join(27016708..27017313,27017423..27017524, 27018278..27018337,27018426..27018535,27018621..27018725, 27018846..27019019,27019105..27019228,27019494..27019551, 27020231..27020428)) /locus_tag="TCM_015255" /product="Homeodomain-like superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028852001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005269t1" /inference="similar to AA sequence:ricco:30169.m006616" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01486t00002; inference alignment:Newbler:10:TSA:cgbaB_g00970t00002; inference alignment:Newbler:10:TSA:cgbaP2_g01486t00001" mRNA complement(join(27016871..27017024,27017418..27017519, 27018274..27018337,27018426..27018535,27018621..27018725, 27018846..27019019,27019105..27019228,27019494..27019551, 27020231..>27020365)) /locus_tag="TCM_015255" /product="Homeodomain-like superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028852001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005269t1" /inference="similar to AA sequence:ricco:30169.m006616" /note="transcript variant 9; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc260t11; alternateUTRof:Thecc1EG015255t5; inference alignment:Newbler:10:TSA:cgbaB_g00970t00002; inference alignment:Newbler:10:TSA:cgbaP2_g01486t00001" mRNA complement(join(27016885..27017024,27017249..27017313, 27017418..27017524,27018278..27018337,27018426..27018535, 27018621..27018725,27018846..27019019,27019105..27019228, 27019494..27019551,27020231..27020579,27020883..27020983)) /locus_tag="TCM_015255" /product="Homeodomain-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028852001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005269t1" /inference="similar to AA sequence:ricco:30169.m006616" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00970t00002" mRNA complement(join(27017000..27017313,27017418..27017519, 27018274..27018337,27018426..27018535,27018621..27018725, 27018846..27019019,27019105..27019228,27019494..27019551, 27020231..>27020365)) /locus_tag="TCM_015255" /product="Homeodomain-like superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028852001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005269t1" /inference="similar to AA sequence:ricco:30169.m006616" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc260t12; inference alignment:Newbler:10:TSA:cgbaB_g00970t00002; inference alignment:Newbler:10:TSA:cgbaP2_g01486t00001" mRNA complement(join(27017078..27017519,27018274..27018337, 27018426..27018535,27018621..27018725,27018846..27019019, 27019105..27019228,27019494..27019551, 27020231..>27020365)) /locus_tag="TCM_015255" /product="Homeodomain-like superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028852001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005269t1" /inference="similar to AA sequence:ricco:30169.m006616" /note="transcript variant 10; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc260t7; alternateUTRof:Thecc1EG015255t5; inference alignment:Newbler:10:TSA:cgbaB_g00970t00002; inference alignment:Newbler:10:TSA:cgbaP2_g01486t00001" mRNA complement(join(27017290..27017524,27018278..27018535, 27018621..27018725,27018846..27019019,27019105..27019228, 27019494..27019551,27020231..>27020365)) /locus_tag="TCM_015255" /product="Homeodomain-like superfamily protein isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028852001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005269t1" /inference="similar to AA sequence:ricco:30169.m006616" /note="transcript variant 8; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc260t6; inference alignment:Newbler:10:TSA:cgbaB_g00970t00002; inference alignment:Newbler:10:TSA:cgbaP2_g01486t00001" mRNA complement(join(27017422..27017519,27018864..27019019, 27019105..27019228,27019494..27019551,27020231..27020467)) /locus_tag="TCM_015255" /product="Homeodomain-like superfamily protein isoform 11" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028852001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005269t1" /inference="similar to AA sequence:ricco:30169.m006616" /note="transcript variant 11; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc288t6; inference alignment:Newbler:10:TSA:cgbaB_g00970t00002; inference alignment:Newbler:10:TSA:cgbaP2_g01486t00001" CDS complement(join(27017426..27017524,27018278..27018337, 27018426..27018535,27018621..27018725,27018846..27019019, 27019105..27019228,27019494..27019551,27020231..27020451)) /locus_tag="TCM_015255" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006616; paralog of Thecc1EG005269t1" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 1" /protein_id="EOY23319.1" /db_xref="TAIR:AT5G52660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3L9" /translation="MVSKNPNPAEGFYLDPTGMALPGLAPFTTTATAASTASSAEDPN KKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYF LKVQKNGTSEHLPPPRPKRKAAHPYPQKASKNAQPHQQVSGSFQSSAALLDTGYVLRS DPSSMLMNPNTSAAASSWTNNAQTVSFSQAKKGSGLANNSCSSTESTPKTRQIGEMTD QGNHGHALRVLPDFAQVYSFIGSIFDPNVTGHLQKLKKMDPIDVETVLLLMRNLSINL TSPDFEDHRRLLSSYEIETEAIDHGGVCKAVHNDQSKSIT" CDS complement(join(27017426..27017524,27018278..27018337, 27018426..27018535,27018621..27018725,27018846..27019019, 27019105..27019228,27019494..27019551,27020231..27020451)) /locus_tag="TCM_015255" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006616; paralog of Thecc1EG005269t1" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 1" /protein_id="EOY23320.1" /db_xref="TAIR:AT5G52660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3L9" /translation="MVSKNPNPAEGFYLDPTGMALPGLAPFTTTATAASTASSAEDPN KKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYF LKVQKNGTSEHLPPPRPKRKAAHPYPQKASKNAQPHQQVSGSFQSSAALLDTGYVLRS DPSSMLMNPNTSAAASSWTNNAQTVSFSQAKKGSGLANNSCSSTESTPKTRQIGEMTD QGNHGHALRVLPDFAQVYSFIGSIFDPNVTGHLQKLKKMDPIDVETVLLLMRNLSINL TSPDFEDHRRLLSSYEIETEAIDHGGVCKAVHNDQSKSIT" CDS complement(join(27017426..27017524,27018278..27018337, 27018426..27018535,27018621..27018725,27018846..27019019, 27019105..27019228,27019494..27019551,27020231..27020451)) /locus_tag="TCM_015255" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30169.m006616; paralog of Thecc1EG005269t1" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 1" /protein_id="EOY23324.1" /db_xref="TAIR:AT5G52660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3L9" /translation="MVSKNPNPAEGFYLDPTGMALPGLAPFTTTATAASTASSAEDPN KKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYF LKVQKNGTSEHLPPPRPKRKAAHPYPQKASKNAQPHQQVSGSFQSSAALLDTGYVLRS DPSSMLMNPNTSAAASSWTNNAQTVSFSQAKKGSGLANNSCSSTESTPKTRQIGEMTD QGNHGHALRVLPDFAQVYSFIGSIFDPNVTGHLQKLKKMDPIDVETVLLLMRNLSINL TSPDFEDHRRLLSSYEIETEAIDHGGVCKAVHNDQSKSIT" CDS complement(join(27017426..27017524,27018278..27018337, 27018426..27018535,27018621..27018725,27018846..27019019, 27019105..27019228,27019494..27019551,27020231..27020451)) /locus_tag="TCM_015255" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:30169.m006616; paralog of Thecc1EG005269t1" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 1" /protein_id="EOY23325.1" /db_xref="TAIR:AT5G52660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3L9" /translation="MVSKNPNPAEGFYLDPTGMALPGLAPFTTTATAASTASSAEDPN KKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYF LKVQKNGTSEHLPPPRPKRKAAHPYPQKASKNAQPHQQVSGSFQSSAALLDTGYVLRS DPSSMLMNPNTSAAASSWTNNAQTVSFSQAKKGSGLANNSCSSTESTPKTRQIGEMTD QGNHGHALRVLPDFAQVYSFIGSIFDPNVTGHLQKLKKMDPIDVETVLLLMRNLSINL TSPDFEDHRRLLSSYEIETEAIDHGGVCKAVHNDQSKSIT" CDS complement(join(27017426..27017524,27018278..27018337, 27018426..27018535,27018621..27018725,27018846..27019019, 27019105..27019228,27019494..27019551,27020231..27020397)) /locus_tag="TCM_015255" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30169.m006616; paralog of Thecc1EG005269t1" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 4" /protein_id="EOY23322.1" /db_xref="TAIR:AT5G52660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3L9" /translation="MALPGLAPFTTTATAASTASSAEDPNKKIRKPYTITKSRESWTE PEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHLPPPRPK RKAAHPYPQKASKNAQPHQQVSGSFQSSAALLDTGYVLRSDPSSMLMNPNTSAAASSW TNNAQTVSFSQAKKGSGLANNSCSSTESTPKTRQIGEMTDQGNHGHALRVLPDFAQVY SFIGSIFDPNVTGHLQKLKKMDPIDVETVLLLMRNLSINLTSPDFEDHRRLLSSYEIE TEAIDHGGVCKAVHNDQSKSIT" CDS complement(join(27017431..27017519,27018864..27019019, 27019105..27019228,27019494..27019551,27020231..27020451)) /locus_tag="TCM_015255" /note="encoded by transcript variant 11; alternatively spliced; dbxref ricco:30169.m006616; paralog of Thecc1EG005269t1" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 11" /protein_id="EOY23329.1" /db_xref="TAIR:AT5G52660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3L9" /translation="MVSKNPNPAEGFYLDPTGMALPGLAPFTTTATAASTASSAEDPN KKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYF LKVQKNGTSEHLPPPRPKRKAAHPYPQKASKNAQPHQQVSGSFQSSAALLDTGYVLRS DPSSMLMNPNTSAAASSWTNNAQTVSCCFLPMRLRQRQLITVVCVKLFIMTNPKV" CDS complement(join(27017431..27017519,27018274..27018337, 27018426..27018535,27018621..27018725,27018846..27019019, 27019105..27019228,27019494..27019551, 27020231..>27020364)) /locus_tag="TCM_015255" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30169.m006616; paralog of Thecc1EG005269t1" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 5" /protein_id="EOY23323.1" /db_xref="TAIR:AT5G52660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3L9" /translation="TATAASTASSAEDPNKKIRKPYTITKSRESWTEPEHDKFLEALQ LFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHLPPPRPKRKAAHPYPQKA SKNAQPHQQVSGSFQSSAALLDTGYVLRSDPSSMLMNPNTSAAASSWTNNAQTVSFSQ AKKGSGLANNSCSSTESTPKTRQIGEMTDQGNHGHALRVLPDFAQVYSFIGSIFDPNV TGHLQKLKKMDPIDVETVLLLMRNLSINLTSPDFEDHVSCFLPMRLRQRQLITVVCVK LFIMTNPKV" CDS complement(join(27017431..27017519,27018274..27018337, 27018426..27018535,27018621..27018725,27018846..27019019, 27019105..27019228,27019494..27019551, 27020231..>27020364)) /locus_tag="TCM_015255" /note="encoded by transcript variant 9; alternatively spliced; dbxref ricco:30169.m006616; paralog of Thecc1EG005269t1" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 5" /protein_id="EOY23327.1" /db_xref="TAIR:AT5G52660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3L9" /translation="TATAASTASSAEDPNKKIRKPYTITKSRESWTEPEHDKFLEALQ LFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHLPPPRPKRKAAHPYPQKA SKNAQPHQQVSGSFQSSAALLDTGYVLRSDPSSMLMNPNTSAAASSWTNNAQTVSFSQ AKKGSGLANNSCSSTESTPKTRQIGEMTDQGNHGHALRVLPDFAQVYSFIGSIFDPNV TGHLQKLKKMDPIDVETVLLLMRNLSINLTSPDFEDHVSCFLPMRLRQRQLITVVCVK LFIMTNPKV" CDS complement(join(27017431..27017519,27018274..27018337, 27018426..27018535,27018621..27018725,27018846..27019019, 27019105..27019228,27019494..27019551, 27020231..>27020364)) /locus_tag="TCM_015255" /note="encoded by transcript variant 10; alternatively spliced; dbxref ricco:30169.m006616; paralog of Thecc1EG005269t1" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 5" /protein_id="EOY23328.1" /db_xref="TAIR:AT5G52660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3L9" /translation="TATAASTASSAEDPNKKIRKPYTITKSRESWTEPEHDKFLEALQ LFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHLPPPRPKRKAAHPYPQKA SKNAQPHQQVSGSFQSSAALLDTGYVLRSDPSSMLMNPNTSAAASSWTNNAQTVSFSQ AKKGSGLANNSCSSTESTPKTRQIGEMTDQGNHGHALRVLPDFAQVYSFIGSIFDPNV TGHLQKLKKMDPIDVETVLLLMRNLSINLTSPDFEDHVSCFLPMRLRQRQLITVVCVK LFIMTNPKV" CDS complement(join(27017502..27017519,27018278..27018337, 27018426..27018535,27018621..27018725,27018846..27019019, 27019105..27019228,27019494..27019551,27020231..27020451)) /locus_tag="TCM_015255" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006616; paralog of Thecc1EG005269t1" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 3" /protein_id="EOY23321.1" /db_xref="TAIR:AT5G52660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3L9" /translation="MVSKNPNPAEGFYLDPTGMALPGLAPFTTTATAASTASSAEDPN KKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYF LKVQKNGTSEHLPPPRPKRKAAHPYPQKASKNAQPHQQVSGSFQSSAALLDTGYVLRS DPSSMLMNPNTSAAASSWTNNAQTVSFSQAKKGSGLANNSCSSTESTPKTRQIGEMTD QGNHGHALRVLPDFAQVYSFIGSIFDPNVTGHLQKLKKMDPIDVETVLLLMRNLSINL TSPDFEDHVAFFL" CDS complement(join(27018291..27018535,27018621..27018725, 27018846..27019019,27019105..27019228,27019494..27019551, 27020231..>27020364)) /locus_tag="TCM_015255" /note="encoded by transcript variant 8; alternatively spliced; dbxref ricco:30169.m006616; paralog of Thecc1EG005269t1" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 8" /protein_id="EOY23326.1" /db_xref="TAIR:AT5G52660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3L9" /translation="TATAASTASSAEDPNKKIRKPYTITKSRESWTEPEHDKFLEALQ LFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHLPPPRPKRKAAHPYPQKA SKNAQPHQQVSGSFQSSAALLDTGYVLRSDPSSMLMNPNTSAAASSWTNNAQTVSFSQ AKKGSGLANNSCSSTESTPKTRQIGEMTDQGNHGHALRVLPDFAQVYSFIGSIFDPNV TGHLQKLKKMDPIDVETVWFILHITFYTILPDIATDMIAYLSFSYSGTAVDEKPLHQS DKS" mobile_element 27022400..27022463 /note="source:CACAO_M_S_E144701_F231_scaffold_10 1144 1208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27022432..27022478 /note="source:CACAO_M_E11054_F12_scaffold_2 8781 8828" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27022861..27033619 /locus_tag="TCM_015256" /note="dbxref CacaoGD:Thecc1EG015256" mRNA join(27022861..27023904,27024005..27024045, 27029949..27030098,27030185..27030458,27030896..27031007, 27031436..27031557,27031659..27031740,27031866..27031998, 27032095..27032252,27032355..27032783,27032950..27033619) /locus_tag="TCM_015256" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016903t1" /inference="similar to AA sequence:Phytozome:Sb01g018395.2" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage; weak similarity to DNA binding protein-like" CDS join(27023388..27023904,27024005..27024045, 27029949..27030098,27030185..27030458,27030896..27031007, 27031436..27031557,27031659..27031740,27031866..27031998, 27032095..27032252,27032355..27032783,27032950..27032980) /locus_tag="TCM_015256" /note="paralog of Thecc1EG016903t1; weak similarity to DNA binding protein-like" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23330.1" /db_xref="Phytozome:Sb01g018395.2" /translation="MECAKFYSNCPAFVCHRDVFLYSVVGFDGELKTVSQKSVDVFIP SDFYNLRFLNPNTNGYYTSLASTSQIQNSVAFRNSKRKLGYNTVESSSYIQNVEQDCR NSQRRNIVSFEIDHRDDDNSFEQELSLASDASQMLPILNDEDHISAFDQQTAHIGTSF VGDNSTSTHFDSNQYNIPLNLGGPRYEIMSYQPLSELQIGKEGGTIQICVARIWHSIN YKQANDIISLDFLATDDKGNAIQAIIHKIHMKEFESILKEGHVYCISEFKVSKPKKSY NVISAPSAITITSKTKIVKASSSALSFQRHYFQFLEFEHLPHRYKINETLIALSSQRC NIVSLHQTKLKALQHQVLNAAALFSTIPTTQGTIINATLWGDLAYCVDDDIIGLKSKP IIILAAMTVGEYQGQPSVASCSASKIYVDLNIPIVADMKARFDEKNAPVLLLDVRQRP QIPPDQQENHNRVTIKQLLQIDHSKTQIETYTCIAKIKEFDCTEGWYYIGCKICMKTL QQISDTFWCPDAKHGEQLPHLCYKLIITVEDNTGNATFVVFGDDGEKVVGASIPKLAL LNHLDKYILPEPITKLIDQEKLFSISLVTKSLDTGNLTFRINSCKAVNEAHKPTMMLG QSSTCESTLHLNKKKSNLEVQECPPSSPENQIQQDLFPEESPIKKVKLSAEQKQDKHG " gene complement(27037660..27038489) /locus_tag="TCM_015258" /note="dbxref CacaoGD:Thecc1EG015258" mRNA complement(join(27037660..27038355,27038464..27038489)) /locus_tag="TCM_015258" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2028t7_C1" CDS complement(27038149..27038304) /locus_tag="TCM_015258" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23331.1" /translation="MNLDSWRQASRQVYSIFCLPVTLIDRISFFFLNEFVICLEKRLA WFVIFLS" gene 27038750..27039772 /locus_tag="TCM_015260" /note="dbxref CacaoGD:Thecc1EG015260" mRNA join(27038750..27038894,27039122..27039197, 27039381..27039772) /locus_tag="TCM_015260" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016336t1" /inference="similar to AA sequence:Phytozome:Glyma20g30260.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2412t4" CDS join(27038889..27038894,27039122..27039197, 27039381..27039694) /locus_tag="TCM_015260" /note="paralog of Thecc1EG016336t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23332.1" /db_xref="Phytozome:Glyma20g30260.1" /translation="MKKVVLKLDLHDGKYRSKAMKTASGLSGVDSVSLDMKDQKLTVV GDVDPVVVVRKLRKLCHTDIVSVGPAKEPEKKKEEPKKEEPKKPAETKKDPPYPYAYL YPAPSYYLHDNYPYGTKIVEESQPGCIIC" gene complement(27041455..27042504) /locus_tag="TCM_015261" /note="dbxref CacaoGD:Thecc1EG015261" mRNA complement(27041455..27042504) /locus_tag="TCM_015261" /product="Sterol regulatory element-binding protein cleavage-activating protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028843001" /inference="similar to AA sequence:Phytozome:GSVIVT01028843001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16480t00001" CDS complement(27041879..27042424) /locus_tag="TCM_015261" /codon_start=1 /product="Sterol regulatory element-binding protein cleavage-activating protein, putative" /protein_id="EOY23333.1" /db_xref="Phytozome:GSVIVT01028843001" /db_xref="TAIR:AT5G52780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PHP4" /translation="MKTLLSLEAQQFYLPKPSLWGPRTPTILPTIIKSQNQIQSSSTW KLQANAKGFASTPPASVKKKGANEDSNNNNNNDDEPVPQVVFDRIIARILVSVGVPLA TGLALLHLFGVAKEQNLWDVPLWLPFLTTFITFGASTLGIAYGTLSASWDPERRGSIM GLEEAQRNWVEMWKEENDGQW" gene complement(27042555..27046282) /locus_tag="TCM_015262" /note="dbxref CacaoGD:Thecc1EG015262" mRNA complement(join(27042555..27043245,27043359..27043635, 27043722..27043768,27043852..27044105,27044189..27044442, 27044650..27044811,27044885..27045024,27045148..27045234, 27045313..27045426,27045514..27045597,27045682..27045758, 27045870..27046282)) /locus_tag="TCM_015262" /product="CBS domain-containing protein with a domain of Uncharacterized protein function" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028842001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034038t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028842001" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(27043204..27043245,27043359..27043635, 27043722..27043768,27043852..27044105,27044189..27044442, 27044650..27044811,27044885..27045024,27045148..27045234, 27045313..27045426,27045514..27045597,27045682..27045758, 27045870..27046050)) /locus_tag="TCM_015262" /note="paralog of Thecc1EG034038t1" /codon_start=1 /product="CBS domain-containing protein with a domain of Uncharacterized protein function" /protein_id="EOY23334.1" /db_xref="Phytozome:GSVIVT01028842001" /db_xref="TAIR:AT5G52790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTD8" /translation="MAANDVPCCESMFWVYLVICVALVSFAGLMSGLTLGLMSLSLVD LEVVIKAGQPQDRRNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDSLLSEWCAI LISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRFIVIILFPVAYPISKLLDLLLGK RHSALLRRAELKTLVDMHGNEAGKGGELTHDETTIISGALDMTQKTAKDAMTPLSNIF SLDINSKLDEKTMGIIISKGHSRVPIYSGSPANIIGLILVKNLIKCRPEDETPIRDLT IRSIPRVHDCFPLYDILNQFQEGHSHMAVVVKCKSDYINEVAESAKAKSSIPERKIHS KSKKRKTEAKGIEDYFHRSGETEFFVNLHTRNGIGQHQYCRNEQLSIPSSSPSANSNI IDIQSPTLSMELGSKLRPQMKKREQATLSNRDLESFPINLDEEVLGIITLEDVMEELL QEEIFDETDDYVDVHTKITINMQPSRRSPLRSPRAATASHLHWRSPTASPISSCHGSP LSSKPHSPAPVAPYVQSPLSKPTLCASPRKPIPNSPSKVSGAAQYSPSPHQVSRKSYE RLRPGS" gene 27047722..27054802 /locus_tag="TCM_015263" /note="dbxref CacaoGD:Thecc1EG015263" mRNA join(27047722..27047915,27048291..27048442, 27048735..27048904,27049024..27049170,27049266..27049317, 27049513..27049687,27049881..27049963,27050124..27050336, 27051215..27051331,27051820..27051967,27052489..27052596, 27052886..27052951,27053034..27053299,27053441..27054100) /locus_tag="TCM_015263" /product="Coiled-coil domain-containing protein 111 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006587" /inference="similar to AA sequence:ricco:30169.m006587" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7314t3" mRNA join(27047722..27047915,27048291..27048442, 27048735..27048904,27049024..27049170,27049266..27049317, 27049513..27049687,27049881..27049963,27050124..27050336, 27051215..27051331,27051820..27051967,27052489..27052596, 27052886..27052951,27053104..27053299,27053441..27054100) /locus_tag="TCM_015263" /product="DNA primases isoform 3" /inference="alignment:exonerate- protein:2:ricco:30169.m006587" /inference="similar to AA sequence:ricco:30169.m006587" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:PASA:2:TSA:puevd3b014743t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7314t3" CDS join(27047834..27047915,27048291..27048442, 27048735..27048904,27049024..27049170,27049266..27049317, 27049513..27049687,27049881..27049963,27050124..27050336, 27051215..27051331,27051820..27051967,27052489..27052596, 27052886..27052951,27053034..27053299,27053441..27053524) /locus_tag="TCM_015263" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006587" /codon_start=1 /product="Coiled-coil domain-containing protein 111 isoform 1" /protein_id="EOY23335.1" /db_xref="TAIR:AT5G52800.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KHM4" /translation="MAKKGNASTMDDVDRLFECFKCGISPPQSAVRERKRRKSKLNQE NSARKVSASPCTPSLGSAEQGKETPNNAQLSVGKRVSTMVKVGKFSRGKQISPVIFYG SPHGIPPKRPLSLLRLLHEIRIDLSEQEKSNLRTEVWATFPRQDEAVKFAKGHANARV FSYQDHYSGQRRYLASTYEEFWKRYKIMDSKLRHHYEVIQEGFPCHLYFDLEFNKRDN VGRDGDEMVDLLISVILEALLEKYSINGNQDWVVELDSSTEEKFSRHLIMRIPKTAFK DNSHVGAFVAEICSRIASARERDKRFETLYVKNASTSAESPGQLFVDTAVYSRNRCFR LALSSKAGKASFLLPTGRFKCKEMGEVDMFMASLICNMEVDCEKFLVCKMELDCVKTL HFETEVTSNFGRYCGAPQENTYISDVSTTYLTGKSPFPSLDEFIESIASTRNASGKIR SWYWFSEYGLIIYSMSRNRYCERIGREHKSNHVMYVVDMRRAAYYQKCYDPDCKGYRS PMRPIPMDCIPDSSFFFDSRQIVDDNGLTSNDLEYQFVNNNNGRVLLYSNESDIDDCT KDSWWLEAIKVADNIDGKPERLMFNDMENMSDEDDDWWVAVERTASQAELKHLS" CDS join(27047834..27047915,27048291..27048442, 27048735..27048904,27049024..27049170,27049266..27049317, 27049513..27049687,27049881..27049963,27050124..27050336, 27051215..27051331,27051820..27051967,27052489..27052596, 27052886..27052951,27053104..27053111) /locus_tag="TCM_015263" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006587" /codon_start=1 /product="DNA primases isoform 3" /protein_id="EOY23337.1" /db_xref="TAIR:AT5G52800.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KHM4" /translation="MAKKGNASTMDDVDRLFECFKCGISPPQSAVRERKRRKSKLNQE NSARKVSASPCTPSLGSAEQGKETPNNAQLSVGKRVSTMVKVGKFSRGKQISPVIFYG SPHGIPPKRPLSLLRLLHEIRIDLSEQEKSNLRTEVWATFPRQDEAVKFAKGHANARV FSYQDHYSGQRRYLASTYEEFWKRYKIMDSKLRHHYEVIQEGFPCHLYFDLEFNKRDN VGRDGDEMVDLLISVILEALLEKYSINGNQDWVVELDSSTEEKFSRHLIMRIPKTAFK DNSHVGAFVAEICSRIASARERDKRFETLYVKNASTSAESPGQLFVDTAVYSRNRCFR LALSSKAGKASFLLPTGRFKCKEMGEVDMFMASLICNMEVDCEKFLVCKMELDCVKTL HFETEVTSNFGRYCGAPQENTYISDVSTTYLTGKSPFPSLDEFIESIASTRNASGKIR SWYWFSEYGLIIYSMSRNRYCERIGREHKSNHVMYVVDMRRAAYYQKCYDPDCKDR" mRNA join(27048302..27048442,27048735..27048904, 27049024..27049170,27049266..27049317,27049513..27049687, 27049881..27049963,27050124..27050336,27051215..27051331, 27051820..27051967,27052489..27052596,27052886..27052951, 27053034..27053299,27053441..27053751,27054779..27054802) /locus_tag="TCM_015263" /product="DNA primases isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006587" /inference="similar to AA sequence:ricco:30169.m006587" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc964t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7314t3" CDS join(27048747..27048904,27049024..27049170, 27049266..27049317,27049513..27049687,27049881..27049963, 27050124..27050336,27051215..27051331,27051820..27051967, 27052489..27052596,27052886..27052951,27053034..27053299, 27053441..27053524) /locus_tag="TCM_015263" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006587" /codon_start=1 /product="DNA primases isoform 2" /protein_id="EOY23336.1" /db_xref="TAIR:AT5G52800.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KHM4" /translation="MVKVGKFSRGKQISPVIFYGSPHGIPPKRPLSLLRLLHEIRIDL SEQEKSNLRTEVWATFPRQDEAVKFAKGHANARVFSYQDHYSGQRRYLASTYEEFWKR YKIMDSKLRHHYEVIQEGFPCHLYFDLEFNKRDNVGRDGDEMVDLLISVILEALLEKY SINGNQDWVVELDSSTEEKFSRHLIMRIPKTAFKDNSHVGAFVAEICSRIASARERDK RFETLYVKNASTSAESPGQLFVDTAVYSRNRCFRLALSSKAGKASFLLPTGRFKCKEM GEVDMFMASLICNMEVDCEKFLVCKMELDCVKTLHFETEVTSNFGRYCGAPQENTYIS DVSTTYLTGKSPFPSLDEFIESIASTRNASGKIRSWYWFSEYGLIIYSMSRNRYCERI GREHKSNHVMYVVDMRRAAYYQKCYDPDCKGYRSPMRPIPMDCIPDSSFFFDSRQIVD DNGLTSNDLEYQFVNNNNGRVLLYSNESDIDDCTKDSWWLEAIKVADNIDGKPERLMF NDMENMSDEDDDWWVAVERTASQAELKHLS" gene 27053727..27055769 /locus_tag="TCM_015264" /note="dbxref CacaoGD:Thecc1EG015264" mRNA join(27053727..27053751,27054779..27055602) /locus_tag="TCM_015264" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s07100.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s07100.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1266t2; inference alignment:Newbler:10:TSA:cgbaB_g08819t00001" mRNA 27054288..27055769 /locus_tag="TCM_015264" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s07100.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s07100.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08819t00001" CDS 27054649..27055464 /locus_tag="TCM_015264" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /protein_id="EOY23338.1" /db_xref="Phytozome:POPTR_0004s07100.1" /db_xref="TAIR:AT5G52810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLY0" /translation="MPSWSSSPSLPYIGVKLVTYFPQNSTLNLPCVHANYVLFGSMTG QPLASMDGTVLTLYRTACVSGLASKILARNDSKVLVMIGAGALAPHLIKAHLAANPSL QKVIIWNRTIKKATDLAENLQGNNEYNGVCFESNESLERIVELGDIVSCATNAEVALV KGEKLKAGAHLDLVGSFMHTMKECDDEAIRRGRVYVDNAATLVEAGELVGAFERGVIG KEDIGGNLVELIKGEKVGRTNSEEITVFKSVGSAVVDILAAQLVYETYTKNKC" CDS 27054796..27055464 /locus_tag="TCM_015264" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /protein_id="EOY23339.1" /db_xref="Phytozome:POPTR_0004s07100.1" /db_xref="TAIR:AT5G52810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLY0" /translation="MDGTVLTLYRTACVSGLASKILARNDSKVLVMIGAGALAPHLIK AHLAANPSLQKVIIWNRTIKKATDLAENLQGNNEYNGVCFESNESLERIVELGDIVSC ATNAEVALVKGEKLKAGAHLDLVGSFMHTMKECDDEAIRRGRVYVDNAATLVEAGELV GAFERGVIGKEDIGGNLVELIKGEKVGRTNSEEITVFKSVGSAVVDILAAQLVYETYT KNKC" gene complement(27055593..27060439) /locus_tag="TCM_015265" /note="dbxref CacaoGD:Thecc1EG015265" mRNA complement(join(27055593..27056051,27057425..27057766, 27058010..27058135,27058287..27058451,27058832..27058899, 27058984..27059086,27059324..27059543,27059878..27059968, 27060194..27060388)) /locus_tag="TCM_015265" /product="Pentatricopeptide repeat superfamily protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028827001" /inference="similar to AA sequence:Phytozome:GSVIVT01028827001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1190t9_C1; inference alignment:Newbler:10:TSA:cgbaB_g06195t00001" mRNA complement(join(27055612..27056050,27056229..27056324, 27056711..27056863,27057425..27057766,27058010..27058135, 27058287..27058451,27058832..27058899,27058984..27059086, 27059324..27059543,27059878..27059968,27060194..27060439)) /locus_tag="TCM_015265" /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028827001" /inference="similar to AA sequence:Phytozome:GSVIVT01028827001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06195t00001" CDS complement(join(27055946..27056050,27056229..27056324, 27056711..27056863,27057425..27057766,27058010..27058135, 27058287..27058451,27058832..27058899,27058984..27059086, 27059324..27059543,27059878..27059968,27060194..27060275)) /locus_tag="TCM_015265" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /protein_id="EOY23340.1" /db_xref="Phytozome:GSVIVT01028827001" /db_xref="TAIR:AT5G24060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KFP8" /translation="MMMMRIESALAVRFPAGANFCSSSALHHYRPTCSSDEVTCCHVT SRRLFRRGGFDLTWDRFRRINSGSLLRRTLIKNKIRATAEHLGSASDPTKQNRRPHYH PFEDIGEATSKNSNDAILSAAETTRTIIKVNSKATLMFTGIINDEVHENIMWPDLPYV TDEHGNVYFQVKSDEDIMQSLTLENNFVQVIIGFDTTEIMKEIELSGPSDIDFGIEEI EDEDSDVEDVDEDEDDHAEEEDYDEEWVAALEHEDDQDDSDETLGDWAKLETMRSSHP MYFAKKLTEVASDDPIDWMEQPSDGLAIQGLIRPAFVEEHSEIQKHMSSNQSRSSDTS QVEKVVEDKLEDLGIINGQSNELGWSGDSSTISEEPEKKEISINGSSFYKLEIVKIQL ITAHGHQTVVELEDFKQAQPDAIAQSAAKIISCLKAGGEKTTQALKSLCWRCKSIQVE EVAIIGIDSLGFDLRVCCGPQIQTLRFAFNTRATSEYSAERQLNDLLFPRSHQKPQKR TQAHQNEC" mRNA complement(join(<27056022..27056050,27056711..27056863, 27057425..27057766,27058010..27058135,27058287..27058451, 27058832..27058899,27058984..27059086,27059324..27059543, 27059878..27059968,27060194..27060407)) /locus_tag="TCM_015265" /product="Pentatricopeptide repeat superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028827001" /inference="similar to AA sequence:Phytozome:GSVIVT01028827001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1186t2; inference alignment:Newbler:10:TSA:cgbaB_g06195t00001" mRNA complement(join(27056022..27056324,27056446..27056863, 27057425..27057766,27058010..27058135,27058287..27058451, 27058832..27058899,27058984..27059086,27059324..27059543, 27059878..27059968,27060194..27060407)) /locus_tag="TCM_015265" /product="Pentatricopeptide repeat superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028827001" /inference="similar to AA sequence:Phytozome:GSVIVT01028827001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1186t3; inference alignment:Newbler:10:TSA:cgbaB_g06195t00001" CDS complement(join(<27056024..27056050,27056711..27056863, 27057425..27057766,27058010..27058135,27058287..27058451, 27058832..27058899,27058984..27059086,27059324..27059543, 27059878..27059968,27060194..27060275)) /locus_tag="TCM_015265" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 4" /protein_id="EOY23343.1" /db_xref="Phytozome:GSVIVT01028827001" /db_xref="TAIR:AT3G49140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WMN5" /translation="MMMMRIESALAVRFPAGANFCSSSALHHYRPTCSSDEVTCCHVT SRRLFRRGGFDLTWDRFRRINSGSLLRRTLIKNKIRATAEHLGSASDPTKQNRRPHYH PFEDIGEATSKNSNDAILSAAETTRTIIKVNSKATLMFTGIINDEVHENIMWPDLPYV TDEHGNVYFQVKSDEDIMQSLTLENNFVQVIIGFDTTEIMKEIELSGPSDIDFGIEEI EDEDSDVEDVDEDEDDHAEEEDYDEEWVAALEHEDDQDDSDETLGDWAKLETMRSSHP MYFAKKLTEVASDDPIDWMEQPSDGLAIQGLIRPAFVEEHSEIQKHMSSNQSRSSDTS QVEKVVEDKLEDLGIINGQSNELGWSGDSSTISEEPEKKEISINGSSFYKLEIVKIQL ITAHGHQTVVELEDFKQAQPDAIAQSAAKIISCLKAGGEKTTQALKSLCWRCKSIQVE ATSEYSAER" mRNA complement(join(27056026..27056050,27056229..27056324, 27056711..27056859,27057425..27057766,27058010..27058135, 27058287..27058451,27058832..27058899,27058984..27059086, 27059324..27059543,27059878..27059968,27060194..27060387)) /locus_tag="TCM_015265" /product="Pentatricopeptide repeat superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028827001" /inference="similar to AA sequence:Phytozome:GSVIVT01028827001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1190t6_C2; inference alignment:Newbler:10:TSA:cgbaB_g06195t00001" CDS complement(join(27056034..27056051,27057425..27057766, 27058010..27058135,27058287..27058451,27058832..27058899, 27058984..27059086,27059324..27059543,27059878..27059968, 27060194..27060275)) /locus_tag="TCM_015265" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 5" /protein_id="EOY23344.1" /db_xref="Phytozome:GSVIVT01028827001" /db_xref="TAIR:AT5G24060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KFP8" /translation="MMMMRIESALAVRFPAGANFCSSSALHHYRPTCSSDEVTCCHVT SRRLFRRGGFDLTWDRFRRINSGSLLRRTLIKNKIRATAEHLGSASDPTKQNRRPHYH PFEDIGEATSKNSNDAILSAAETTRTIIKVNSKATLMFTGIINDEVHENIMWPDLPYV TDEHGNVYFQVKSDEDIMQSLTLENNFVQVIIGFDTTEIMKEIELSGPSDIDFGIEEI EDEDSDVEDVDEDEDDHAEEEDYDEEWVAALEHEDDQDDSDETLGDWAKLETMRSSHP MYFAKKLTEVASDDPIDWMEQPSDGLAIQGLIRPAFVEEHSEIQKHMSSNQSRSSDTS QVEKVVEDKLEDLGIINGQSNELGWSGDSSTISEEPEKKEISINGSSFYKLEIVKIQL ITAHGHQGHFRV" CDS complement(join(27056609..27056863,27057425..27057766, 27058010..27058135,27058287..27058451,27058832..27058899, 27058984..27059086,27059324..27059543,27059878..27059968, 27060194..27060275)) /locus_tag="TCM_015265" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 3" /protein_id="EOY23342.1" /db_xref="Phytozome:GSVIVT01028827001" /db_xref="TAIR:AT3G49140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WMN5" /translation="MMMMRIESALAVRFPAGANFCSSSALHHYRPTCSSDEVTCCHVT SRRLFRRGGFDLTWDRFRRINSGSLLRRTLIKNKIRATAEHLGSASDPTKQNRRPHYH PFEDIGEATSKNSNDAILSAAETTRTIIKVNSKATLMFTGIINDEVHENIMWPDLPYV TDEHGNVYFQVKSDEDIMQSLTLENNFVQVIIGFDTTEIMKEIELSGPSDIDFGIEEI EDEDSDVEDVDEDEDDHAEEEDYDEEWVAALEHEDDQDDSDETLGDWAKLETMRSSHP MYFAKKLTEVASDDPIDWMEQPSDGLAIQGLIRPAFVEEHSEIQKHMSSNQSRSSDTS QVEKVVEDKLEDLGIINGQSNELGWSGDSSTISEEPEKKEISINGSSFYKLEIVKIQL ITAHGHQTVVELEDFKQAQPDAIAQSAAKIISCLKAGGEKTTQALKSLCWRCKSIQVE VKNKKVKVMKSIGCMKVCYLDVELQPFYLTMLC" CDS complement(join(27056848..27056859,27057425..27057766, 27058010..27058135,27058287..27058451,27058832..27058899, 27058984..27059086,27059324..27059543,27059878..27059968, 27060194..27060275)) /locus_tag="TCM_015265" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 2" /protein_id="EOY23341.1" /db_xref="Phytozome:GSVIVT01028827001" /db_xref="TAIR:AT5G24060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KFP8" /translation="MMMMRIESALAVRFPAGANFCSSSALHHYRPTCSSDEVTCCHVT SRRLFRRGGFDLTWDRFRRINSGSLLRRTLIKNKIRATAEHLGSASDPTKQNRRPHYH PFEDIGEATSKNSNDAILSAAETTRTIIKVNSKATLMFTGIINDEVHENIMWPDLPYV TDEHGNVYFQVKSDEDIMQSLTLENNFVQVIIGFDTTEIMKEIELSGPSDIDFGIEEI EDEDSDVEDVDEDEDDHAEEEDYDEEWVAALEHEDDQDDSDETLGDWAKLETMRSSHP MYFAKKLTEVASDDPIDWMEQPSDGLAIQGLIRPAFVEEHSEIQKHMSSNQSRSSDTS QVEKVVEDKLEDLGIINGQSNELGWSGDSSTISEEPEKKEISINGSSFYKLEIVKIQL ITAHGHQLLN" gene 27060554..27063100 /locus_tag="TCM_015267" /note="dbxref CacaoGD:Thecc1EG015267" mRNA join(27060554..27060655,27060838..27060983, 27061068..27061166,27061335..27061478,27061584..27061796, 27062338..27062580,27062664..27063100) /locus_tag="TCM_015267" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028826001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029590t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028826001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b014746t1a2; inference alignment:Newbler:10:TSA:cgbaL_g01171t00001" mRNA join(27060573..27060655,27060838..27060904, 27061068..27061166,27061335..27061478,27061584..27061796, 27062338..27062580,27062664..27062943) /locus_tag="TCM_015267" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028826001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029590t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028826001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01171t00001; inference alignment:Newbler:10:TSA:cgbaL_g01171t00001" CDS join(27060839..27060904,27061068..27061166, 27061335..27061478,27061584..27061796,27062338..27062580, 27062664..27062675) /locus_tag="TCM_015267" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029590t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 1" /protein_id="EOY23345.1" /db_xref="Phytozome:GSVIVT01028826001" /db_xref="TAIR:AT4G21190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LG95" /translation="MLCCRYALPLITKTTGSPRNTVVCAAKGPRPRYPRVWKSRRRIG TVSKSAKLVSCVKELSNVKEEVYGALDSFIAWELEFPLITVKKALKILQNEQEWKRII QVVKWMLSKGQGRTMGTYFTLLNALAEDGRLDEAEELWAKLFSDNLESTPRIFFDKMI SIYYHKGMHDKMFEVFADMEELGVKPSVSVVSMVGNVFQQLGMLDKYDKLNKKYPPPK WEYRYIKGKRVKIKVKQLEEFDKIAKGVTEDKETDENYDI" CDS join(27060978..27060983,27061068..27061166, 27061335..27061478,27061584..27061796,27062338..27062580, 27062664..27062675) /locus_tag="TCM_015267" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029590t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /protein_id="EOY23346.1" /db_xref="Phytozome:GSVIVT01028826001" /db_xref="TAIR:AT4G21190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LG95" /translation="MKVCAAKGPRPRYPRVWKSRRRIGTVSKSAKLVSCVKELSNVKE EVYGALDSFIAWELEFPLITVKKALKILQNEQEWKRIIQVVKWMLSKGQGRTMGTYFT LLNALAEDGRLDEAEELWAKLFSDNLESTPRIFFDKMISIYYHKGMHDKMFEVFADME ELGVKPSVSVVSMVGNVFQQLGMLDKYDKLNKKYPPPKWEYRYIKGKRVKIKVKQLEE FDKIAKGVTEDKETDENYDI" gene complement(27063026..27069446) /locus_tag="TCM_015268" /note="dbxref CacaoGD:Thecc1EG015268" mRNA complement(join(27063026..27064419,27064927..27065037, 27065499..27065585,27066328..27066447,27066551..27066728, 27067316..27067533,27067633..27067739,27067865..27067985, 27068167..27068262,27068383..27068577,27069109..27069446)) /locus_tag="TCM_015268" /product="DnaJ / Sec63 Brl domains-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006583" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022493t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s07070.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1020t15" mRNA complement(join(27063429..27064419,27064927..27065037, 27065499..27065585,27066328..27066447,27066551..27066728, 27067316..27067533,27067633..27067739,27067865..27068263)) /locus_tag="TCM_015268" /product="DnaJ / Sec63 Brl domains-containing protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006583" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022493t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s07070.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12858t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1020t15" CDS complement(join(27063592..27064419,27064927..27065037, 27065499..27065585,27066328..27066447,27066551..27066728, 27067316..27067533,27067633..27067739,27067865..27067985, 27068167..27068262,27068383..27068568)) /locus_tag="TCM_015268" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022493t1" /codon_start=1 /product="DnaJ / Sec63 Brl domains-containing protein isoform 1" /protein_id="EOY23347.1" /db_xref="Phytozome:POPTR_0004s07070.1" /db_xref="TAIR:AT1G79940.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSD9" /translation="MAASEENSALFPIFILTIMALPLVPYTVMKLCRAASRKTKVIHC QCADCSRSGKYRKSIFKRISNFSTCSNLTLVLLWIIMIFLVYYIKNMSGEIQVFEPYS ILGLEPGASDAEIRKAYRRLSILYHPDKNPDPAAHKHFVEYIVKAYQALTDPISRENY EKYGHPDGRQGFQMGIALPQFLLDIDGASGGILLLWIVGVCILLPLVIAVIYLSRSSK YTGNYVMHQTLSTYYYLMKPSLAPSKVMDVFTKAAEYVEIPVRRTDDEPLQKLFMSVR SELNLDLKNIKQEQAKFWKQHPAIVKTELLIQAQLTRESAALSPALLGDFRRMLELAP RLLEELLKMAVVPRTAQGHGWLRPAIGVVELSQCIIQAVPLSARKTTGGSSEGIASFL QLPHFSEAVIKKIARKKVRTFQELRDMTVEDRAELLTQAAGFSSAEVQDVEMVLEMMP SLTVEVTCETEGEEGIQEADIVTVQAWITLKRGSGLIGALPHAPNFPFHKEENFWFLL ADGVSNNVWFSQKVSFMDEAAAITTASKTIQEAMEVSGASVKETSEAVKRAVEKVRGG SRLVMGKFPAPTEGNYNLTCYCLCDSWIGCDKKTNLKVKILKRTRAGTRSGHVSEEGL LVEDGVEEEEENEEEYDDYESEYSEDEEDEKDTKKKGPAANGTVNQKGSSSEGSGTDE E" CDS complement(join(27063592..27064419,27064927..27065037, 27065499..27065585,27066328..27066447,27066551..27066728, 27067316..27067524)) /locus_tag="TCM_015268" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022493t1" /codon_start=1 /product="DnaJ / Sec63 Brl domains-containing protein isoform 2" /protein_id="EOY23348.1" /db_xref="Phytozome:POPTR_0004s07070.1" /db_xref="TAIR:AT1G79940.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSD9" /translation="MGIALPQFLLDIDGASGGILLLWIVGVCILLPLVIAVIYLSRSS KYTGNYVMHQTLSTYYYLMKPSLAPSKVMDVFTKAAEYVEIPVRRTDDEPLQKLFMSV RSELNLDLKNIKQEQAKFWKQHPAIVKTELLIQAQLTRESAALSPALLGDFRRMLELA PRLLEELLKMAVVPRTAQGHGWLRPAIGVVELSQCIIQAVPLSARKTTGGSSEGIASF LQLPHFSEAVIKKIARKKVRTFQELRDMTVEDRAELLTQAAGFSSAEVQDVEMVLEMM PSLTVEVTCETEGEEGIQEADIVTVQAWITLKRGSGLIGALPHAPNFPFHKEENFWFL LADGVSNNVWFSQKVSFMDEAAAITTASKTIQEAMEVSGASVKETSEAVKRAVEKVRG GSRLVMGKFPAPTEGNYNLTCYCLCDSWIGCDKKTNLKVKILKRTRAGTRSGHVSEEG LLVEDGVEEEEENEEEYDDYESEYSEDEEDEKDTKKKGPAANGTVNQKGSSSEGSGTD EE" mobile_element complement(27069418..27069958) /note="source:CACAO_M_S_E5860_F197_scaffold_2 11225 11767" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27070045..27072447 /note="source:INTACT321_F197_scaffold_2-int 521 3071" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27070332..27072462) /note="source:CACAO_M_E29_F88_scaffold_1 2368 5640" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27072447..27073082 /note="source:CACAO_on_E459_scaffold_2 136 749" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(27074747..27076512) /note="source:INTACT461_F221_scaffold_3-int 28 1831" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 27077123..27078004 /note="source:CACAO_M_E84368_F4_scaffold_10 5262 6140" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27078738..27078922) /note="source:CACAO_Mariner_E36_scaffold_2 1755 1917" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(27079062..27080384) /locus_tag="TCM_015270" /note="dbxref CacaoGD:Thecc1EG015270" mRNA complement(join(27079062..27079552,27079754..27079940, 27080073..27080384)) /locus_tag="TCM_015270" /product="Ribonuclease 2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046327t1" /inference="similar to AA sequence:ricco:30131.m007063" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(27079305..27079552,27079754..27079940, 27080073..27080345)) /locus_tag="TCM_015270" /note="dbxref ricco:30131.m007063; paralog of Thecc1EG046327t1" /codon_start=1 /product="Ribonuclease 2, putative" /protein_id="EOY23349.1" /translation="MQRHLLVAAVLATFSLLVSGQNNYPDFFYKLSLQWPPAVCATSQ CRTPIPGTFTIHGLWPQFVKDDRPVPPYNPTTNKCNDVKPTAPDQILVSLQPIRDKLN KLWPSLLMKNTNEDFWRLEWERHGMCSDYLDDPGSYFTTALNLATTNNPLKGLVPRQD LYKASEISEAINTKLGKYPEISCGKVSNTLQLNEIRLCFERAKPPSVLRDCPKRYSNG CSNGNDQVKFPPLTSRV" mobile_element 27081729..27082663 /note="source:scaffold_4_CACTA_0511 12887 13833" /mobile_element_type="transposon:TIR/CACTA" gene 27083897..27085538 /locus_tag="TCM_015271" /note="dbxref CacaoGD:Thecc1EG015271" mRNA join(27083897..27084225,27084318..27084516, 27085052..27085538) /locus_tag="TCM_015271" /product="Ribonuclease 2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045272t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6699t1" CDS join(27083956..27084225,27084318..27084516, 27085052..27085308) /locus_tag="TCM_015271" /note="paralog of Thecc1EG045272t1" /codon_start=1 /product="Ribonuclease 2, putative" /protein_id="EOY23350.1" /translation="MHRHFLVAAVLATVSWLVAGESNFATYKLSLRWPPAHCDAPSFE CKPHVLNTFTIHGLWPQFADGKVVPPYDPETNRCTDVTPVNPDQILGQMTHLIEALRK YWPNYRDYQNETLNENFWKHAWKLHGMCSDYPDNPFSYFRNAVSLSVKYIDPFKGTRI TPRIVPYIAKDISDAIKEKLGVYPQIACNEVGGTVQLTEVRLCFKRDRENSPSILQDC PIRYAYKCSDDTDEISFVPHLIG" mobile_element complement(27085711..27086236) /note="source:scaffold_4_CACTA_0511 13273 13839" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27086207..27086235) /note="source:CACAO_M_E1841_F5_scaffold_1 26472 26536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27086236..27086344) /note="source:scaffold_1_CACTA_0011 8937 9045" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27086307..27086513 /note="source:CACAO_M_E43498_F302_scaffold_5 187 396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27087243..27087851) /note="source:CACAO_M_E49205_F4_scaffold_6 3206 3815" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27089308..27090073 /note="source:INTACT505_F28_scaffold_3-int 8302 8976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27090728..27091062 /note="source:INTACT505_F28_scaffold_3-int 3955 4290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27091068..27091380 /note="source:scaffold_7_CACTA_0789 8927 9239" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27091372..27091947 /note="source:INTACT745_F320_scaffold_4-int 7366 7926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27101383..27101424 /note="source:CACAO_M_S_E85505_F266_scaffold_7 2302 2343" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27102852..27104756 /locus_tag="TCM_015272" /note="dbxref CacaoGD:Thecc1EG015272" mRNA join(27102852..27103253,27104244..27104756) /locus_tag="TCM_015272" /product="NADH-ubiquinone oxidoreductase-related" /inference="alignment:exonerate- protein:2:ricco:30169.m006580" /inference="similar to AA sequence:ricco:30169.m006580" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9310t1" CDS join(27102941..27103253,27104244..27104431) /locus_tag="TCM_015272" /note="dbxref ricco:30169.m006580" /codon_start=1 /product="NADH-ubiquinone oxidoreductase-related" /protein_id="EOY23351.1" /db_xref="TAIR:AT5G52840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLX7" /translation="MFLRLISRPLLAKVKETTGIVGLDVVPNAREVLIGLYTKTLKEI QAVPEDEGYRKAVESFTRHRLKVCQEEGDWEMIEKRLGCGQVEELIEEARDELTLIGK MIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFYQTLEAVSKKDAPKVTSG EPQLKE" gene complement(27104811..27109608) /locus_tag="TCM_015273" /note="dbxref CacaoGD:Thecc1EG015273" mRNA complement(join(27104811..27108073,27109013..27109608)) /locus_tag="TCM_015273" /product="Pentatricopeptide repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028819001" /inference="similar to AA sequence:Phytozome:GSVIVT01028819001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS complement(27105085..27107739) /locus_tag="TCM_015273" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative" /protein_id="EOY23352.1" /db_xref="Phytozome:GSVIVT01028819001" /db_xref="TAIR:AT5G52850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIR4" /translation="MLCKTGSRIIKGNEVTRLEETCSRVLSFCNSNSLKEGISVHCPI VKLGLQDHLYLNNNLLSLYGKCLGVDKARHFFDEMPFKDVVSWSGILSAYVKRGNHDC ALEFFDSMLISGQRPNEFTLSSVLRSCSALGEFQYGTCIQAYMIKQGFEQNPILVSGL LDFYSKFNFTGEAYKLFIYVGNHDTVSWTTMISSFVQAQRWSKALLLYVDMVEAGVPP NEFTFVKLLGVCSVLGLKYGKLVHAHMLLRGVKLNVVVKTALVDMYARCQRMEDAIKV SNLTSEYDTLLCTAVISGFAQNFMFRKAIAAFREMRISGILPNNFTFSSILNVSSLML SLELGEQIHSRVVVAGLEHDVNVGNALITMYVKCSDKIKDALRVFRGISLPNVISWTS LIAGFAEHGFQQDSFHLFMEMRAAGVQPNSFTISSIIGSFNAAKLLPQTLMLHGHVIK TNLYKDIAVQNALTDVYAGLGMLDDAWQVVHMMSHRDAITYTSLASRINQMGHHELAL HIITDMYNDDIKIDAFSMASFLSASADLGTLVTGKQLHCHSMKSGLGRWVSVANGLVD LYGKCGCICDAQRAFGEITVPDIFSWNGLISGLASIGSISSALSAFDDMRLAGVRPDS VTFLLLLSACNNGKLVDLGLEYFQSMREVHDIVPQLDHYVHLVDILGRGGRLEEAMEV VQTMPFRADASIYKTLLRACKAHRNIPLAEDMARRGLELDPSDPAFYILLANLYDDSG RHDFGEKTRKLMREKQLRKNPSQSWVQIRNKVHLFVAGERSHPQINEIYEKIESIDAE IKSHRYLYQGMGIGDSYYHSEKLAVAFGLLNTPSKIPIYIIKNNSICRNCHNFINFVT HLVDKEIIVREGNRLHSFRKGECSCRGC" mobile_element 27108105..27109980 /note="source:CACAO_hAT_E410_scaffold_1 622 2479" /mobile_element_type="transposon:TIR/hAT" mobile_element 27109977..27110706 /note="source:scaffold_5_CACTA_0607 4125 4843" /mobile_element_type="transposon:TIR/CACTA" gene 27113427..27117166 /locus_tag="TCM_015274" /note="dbxref CacaoGD:Thecc1EG015274" mRNA join(27113427..27113786,27113895..27113964, 27114291..27114415,27114547..27114679,27114766..27114862, 27114999..27115064,27115292..27115430,27116162..27116247, 27116371..27116475,27116621..27117166) /locus_tag="TCM_015274" /product="Phosphatase-related" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028818001" /inference="similar to AA sequence:Phytozome:GSVIVT01028818001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07424t00001" CDS join(27113486..27113786,27113895..27113964, 27114291..27114415,27114547..27114679,27114766..27114862, 27114999..27115064,27115292..27115430,27116162..27116247, 27116371..27116475,27116621..27116728) /locus_tag="TCM_015274" /codon_start=1 /product="Phosphatase-related" /protein_id="EOY23353.1" /db_xref="Phytozome:GSVIVT01028818001" /db_xref="TAIR:AT4G11260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUT5" /translation="MGLVSHKSPLCSPAVPKIAIPLALFYSSRDFSLLFLSCSLFSCF PPAMASDLETKAKEAFFDDHFQLALDLYSQAIELNPKNAELYADRAQANIKINNLTEA VADANKAIELDPSMSKAYLRKATACMKLEEYQTAKAALETGAALAPGESRFSQLIKEC QERIAEETGDLPKQTLEEVTTNVEPATKVEPEKNVPNLVTVAAPSKLTYRHEFYQKPE EVVVTIFAKGIPRECVYVEYGEQILSVAIDAPGKDAFHFQPRLFGKIIPDKCRYDVLS TKIEIRLAKAEPIQWTSLEFSKEVTVPQRVNVSSVTGNQKPVYPSSKPKRVDWDKLEA QVKKEEKDEKLDGDAALNKFFRDIYQDADEDTRRAMQKSFVESNGTVLSTNWNEVGAK KVEGSPPDGMEMRKWEY" gene 27117426..27120625 /locus_tag="TCM_015275" /note="dbxref CacaoGD:Thecc1EG015275" mRNA join(27117426..27117879,27117995..27118109, 27119154..27119272,27120118..27120304) /locus_tag="TCM_015275" /product="SNARE-like superfamily protein isoform 1" /inference="similar to AA sequence:Phytozome:POPTR_0017s00860.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1091t4; alternateUTRof:Thecc1EG015275t1" mRNA join(27117426..27117879,27117995..27118109, 27119154..27119272,27120118..27120178,27120261..27120304) /locus_tag="TCM_015275" /product="SNARE-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G51160.1" /inference="similar to AA sequence:Phytozome:POPTR_0017s00860.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1091t3; alternateUTRof:Thecc1EG015275t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9276t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1905t1" mRNA join(27117426..27117879,27117995..27118109, 27119154..27119272,27120277..27120298) /locus_tag="TCM_015275" /product="SNARE-like superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:TAIR:AT1G51160.1" /inference="similar to AA sequence:TAIR:AT1G51160.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1905t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1905t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9276t1" mRNA join(27117468..27117879,27117995..27118109, 27119154..27119272,27120118..27120178,27120256..27120625) /locus_tag="TCM_015275" /product="SNARE-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G51160.1" /inference="similar to AA sequence:Phytozome:POPTR_0017s00860.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b014755t1a2; alternateUTRof:Thecc1EG015275t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9276t1" mRNA join(27117558..27117879,27117995..27118109, 27119154..27119272,27120118..27120178,27120277..27120441) /locus_tag="TCM_015275" /product="SNARE-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G51160.1" /inference="similar to AA sequence:Phytozome:POPTR_0017s00860.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9276t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9276t1" CDS join(27117656..27117879,27117995..27118109, 27119154..27119272,27120277..27120280) /locus_tag="TCM_015275" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="SNARE-like superfamily protein isoform 5" /protein_id="EOY23358.1" /db_xref="TAIR:AT1G51160.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYB8" /translation="MQFFGGSEISPSPPVPTTTGNNAHMMYVFNRNGVCLLYREWNRP LHTLNPQQDHKLMFGLLFSLKSLTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYK LSFMETPSGIKIILVTHPRTGDLREPLKYIYNLYVEYVAKNPLYTPGTSIR" CDS join(27117656..27117879,27117995..27118109, 27119154..27119272,27120118..27120169) /locus_tag="TCM_015275" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="SNARE-like superfamily protein isoform 1" /protein_id="EOY23354.1" /db_xref="Phytozome:POPTR_0017s00860.1" /db_xref="TAIR:AT1G51160.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYB8" /translation="MQFFGGSEISPSPPVPTTTGNNAHMMYVFNRNGVCLLYREWNRP LHTLNPQQDHKLMFGLLFSLKSLTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYK LSFMETPSGIKIILVTHPRTGDLREPLKYIYNLYVEYVAKNPLYTPGTSIRCELFNTA LDQYVRSIA" CDS join(27117656..27117879,27117995..27118109, 27119154..27119272,27120118..27120169) /locus_tag="TCM_015275" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="SNARE-like superfamily protein isoform 1" /protein_id="EOY23355.1" /db_xref="Phytozome:POPTR_0017s00860.1" /db_xref="TAIR:AT1G51160.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYB8" /translation="MQFFGGSEISPSPPVPTTTGNNAHMMYVFNRNGVCLLYREWNRP LHTLNPQQDHKLMFGLLFSLKSLTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYK LSFMETPSGIKIILVTHPRTGDLREPLKYIYNLYVEYVAKNPLYTPGTSIRCELFNTA LDQYVRSIA" CDS join(27117656..27117879,27117995..27118109, 27119154..27119272,27120118..27120169) /locus_tag="TCM_015275" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="SNARE-like superfamily protein isoform 1" /protein_id="EOY23356.1" /db_xref="Phytozome:POPTR_0017s00860.1" /db_xref="TAIR:AT1G51160.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYB8" /translation="MQFFGGSEISPSPPVPTTTGNNAHMMYVFNRNGVCLLYREWNRP LHTLNPQQDHKLMFGLLFSLKSLTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYK LSFMETPSGIKIILVTHPRTGDLREPLKYIYNLYVEYVAKNPLYTPGTSIRCELFNTA LDQYVRSIA" CDS join(27117656..27117879,27117995..27118109, 27119154..27119272,27120118..27120169) /locus_tag="TCM_015275" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="SNARE-like superfamily protein isoform 1" /protein_id="EOY23357.1" /db_xref="Phytozome:POPTR_0017s00860.1" /db_xref="TAIR:AT1G51160.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYB8" /translation="MQFFGGSEISPSPPVPTTTGNNAHMMYVFNRNGVCLLYREWNRP LHTLNPQQDHKLMFGLLFSLKSLTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYK LSFMETPSGIKIILVTHPRTGDLREPLKYIYNLYVEYVAKNPLYTPGTSIRCELFNTA LDQYVRSIA" mobile_element 27121506..27123138 /note="source:scaffold_10_CACTA_0130 7919 9434" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27123604..27124075 /note="source:CACAO_on_S_E390_scaffold_9 2378 2849" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(27124153..27124435) /note="source:scaffold_2_CACTA_0239 2645 2930" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27125245..27125431) /note="source:MITE_CACTA_9 43 223" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(27125587..27126042) /note="source:scaffold_5_CACTA_0614 1 452" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27126500..27126550 /note="source:scaffold_1_CACTA_0008 6267 6612" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27126551..27126859 /note="source:INTACT135F_F90_scaffold_2-int 12867 13176" /mobile_element_type="retrotransposon:LTR/Copia" gene 27126813..27130107 /locus_tag="TCM_015276" /note="dbxref CacaoGD:Thecc1EG015276" mRNA join(27126813..27127355,27128197..27129764, 27130075..27130107) /locus_tag="TCM_015276" /product="UDP-glucosyl transferase 88A1, putative" /inference="alignment:exonerate-protein:2:frave:gene30501" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015277t1" /inference="similar to AA sequence:frave:gene30501" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07049t00001" mobile_element 27127418..27128178 /note="source:INTACT135F_F90_scaffold_2-int 13230 13999" /mobile_element_type="retrotransposon:LTR/Copia" CDS 27128269..27129711 /locus_tag="TCM_015276" /note="dbxref frave:gene30501; paralog of Thecc1EG015277t1" /codon_start=1 /product="UDP-glucosyl transferase 88A1, putative" /protein_id="EOY23359.1" /db_xref="TAIR:AT3G16520.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MX76" /translation="MSAMEEAVVLYPTPPIGHLRATVELGKALLSHQPSLSIHVLIAT PPYQADATAPYIAAVSSTMPSITFHKLPKVTLPPSSNVANHEDLTFEILRLNNSNVLQ ALVSISKKYKVQALIMDFFISTAFKVATDLNIRPYYFYTSCAGSLASFIYLPTLHRNT TKSFKDLNVLLDIPGVPPIPAKDMAKPILDRTEKAYEFFFDVSKNMPKSAGIINNTFE ALEPRVIKAICDGLCVPDGPTAPLYCIGPLISSVDERRSRGNPGDSVAECLTWLDSQP SKSVVYLCFGSLGLFPREQLREIAVGLERSGQRFLWVVRNPPSGSLGVAIKEQAEPDL NALLPKGFLERTEERGLVLKSWAPQVAILNHDSVGGFVTHCGWNSVLESVTAGVPMVA WPLYAEQRYNRVLLVEEIKIALPIVESEYGFVNATEVEKRVTDLMESKEGNLVRERTI AMKHAAKTALGEGGSSRVALAKLVESWKQD" gene complement(27130592..27132649) /locus_tag="TCM_015277" /note="dbxref CacaoGD:Thecc1EG015277" mRNA complement(27130592..27132649) /locus_tag="TCM_015277" /product="UDP-glucosyl transferase 88A1, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028807001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015276t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028807001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS complement(27131057..27132502) /locus_tag="TCM_015277" /note="paralog of Thecc1EG015276t1" /codon_start=1 /product="UDP-glucosyl transferase 88A1, putative" /protein_id="EOY23360.1" /db_xref="Phytozome:GSVIVT01028807001" /db_xref="TAIR:AT3G16520.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MX76" /translation="MEAIVLYPSPGMGHLISMVEVGKLLLTHHPSFTIIILITTPPFN AGSTASYIAAVSATTPSISFHQLPIISLDPAAYDSVEALMRDLIHLNNVHADAALTAI SLTSTVHSLIIDLFCYPALEIAAKLNIPAYYFFTSGASCLALYLHMPSIHRNTTENFK NLNTLFHLPCLPPIPLNHLPEPMLIRDTTVYDFLINCTTHLAKSAGIIINTFETLEPK AVKALSKGFSIPDGPNQTPPVFCIGPLIDTNKGRSKGNGGDDDDDNNDKGIECLKWLD SQPSQSVVFLCFGSMGLFSKKQLMEVAVGLEKSGQRFLWVVRNPPSINKNQGFTAGPD PALDSLLPEGFLDRTSDRGLVVKAWAPQVEVLNHDSVGGFLTHCGWNSVLEAICAGVP MVAWPLYAEQKFNKILLVEELKLAMPVNESESGFVSAEEVEKRVRELMESKEGNSLRN RTMAKRKEAVAALREGGPSRSAVAQLLKCWA" mobile_element 27132778..27133781 /note="source:INTACT639F_F363_scaffold_5-int 7463 8468" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27133445..27133888) /note="source:CACAO_on_E329_A_scaffold_147 3968 4419" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 27134489..27135154 /locus_tag="TCM_015278" /note="dbxref CacaoGD:Thecc1EG015278" mRNA 27134489..27135154 /locus_tag="TCM_015278" /product="Uncharacterized protein" /note="quality class is weak, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.52 coverage" CDS 27134773..27134997 /locus_tag="TCM_015278" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23361.1" /translation="MRQLISRSWPPQHTISYGHYSIPRFLASESINSVTGFSNASAPS FLLRKLFCSSSARHIEATLTLVPRNRRLQG" gene 27135329..27136191 /locus_tag="TCM_015279" /note="dbxref CacaoGD:Thecc1EG015279" mRNA 27135329..27136191 /locus_tag="TCM_015279" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.44 coverage" CDS 27135727..27135990 /locus_tag="TCM_015279" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23362.1" /translation="MLNKFKKIFELNYIKLLIYFDKSLNPLSPYNRIMCKLACKMNDT IRLNSSEAQCYCRSFLRAIAINLQCELSLRQRGYIVAILAKSV" gene complement(27137047..27139889) /locus_tag="TCM_015280" /note="dbxref CacaoGD:Thecc1EG015280" mRNA complement(join(27137047..27139076,27139226..27139889)) /locus_tag="TCM_015280" /product="ABC-2 type transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040920t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05680.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc422t1" CDS complement(join(27137807..27139076,27139226..27139599)) /locus_tag="TCM_015280" /note="paralog of Thecc1EG040920t1" /codon_start=1 /product="ABC-2 type transporter family protein" /protein_id="EOY23363.1" /db_xref="Phytozome:POPTR_0015s05680.1" /db_xref="TAIR:AT5G52860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLX5" /translation="MEDQSASPSPPRPSPLLKTYKLTASSVSYAKLTTTITGYFLFKP CTSTPPTYILRDVSFTANPSQILAIVGPSGAGKSTLLDILAARTSPTNGALLLNSTPI NPSSFRKLSAYVPQHDACLPLLRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFNVMQI LKSIAASRNRTVVLSIHQPSFKILSTIDRILMLSKGTVVHHGTLCSLQAFLLSNGFSV PPQLNALEYAMELLNQLHDSKPITPPSLPPSPESSKSPTNEASDIRYRSSRLHEICSL YNRFWKIIYRTRQLLLTNAFEALIVGLVLGTIYINIGYDKEGIEKRFGLFAFTLTFLL SSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLAIAIIYSTSVYFLV GLCASWQAFAYFVLVIWIIVLMANSFVLFLSSLAPNYIAGTSLVTILLGAFFLFSGYF ISKDSLPKYWLFMYFFSMYKYALDALLINEYSCLASRCFLWYNETKTCMLTGGDVLQK KGLHEGQRWINIYILVGFFVFYRVLCLLVLIRRVSRSMK" gene 27143021..27143778 /locus_tag="TCM_015281" /note="dbxref CacaoGD:Thecc1EG015281" mRNA 27143021..27143778 /locus_tag="TCM_015281" /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene13162" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032388t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028798001" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3368t1" CDS 27143032..27143607 /locus_tag="TCM_015281" /note="paralog of Thecc1EG032388t1" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative" /protein_id="EOY23364.1" /db_xref="Phytozome:GSVIVT01028798001" /db_xref="TAIR:AT2G46150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BYF8" /translation="MMSEDRTTSRRKRNIKCLAYIVAGVIAQTIIILLFVMLVMRIRN PKVRLGGVTVENLNLNSSSSSPSFSMNLNAQVTVKNTNFGHFKFQNSTLTISYRGTPV GEATIVKARARARSTTKLNVTVSVSSDKMSRNSALSSDVGSGTINLSSHAKLDGKIHL FKVFKKKKSAEMNCTMEVTTSSKQIQNLMCQ" gene complement(27143986..27144367) /locus_tag="TCM_015282" /note="dbxref CacaoGD:Thecc1EG015282" mRNA complement(27143986..27144367) /locus_tag="TCM_015282" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc4890t1" CDS complement(27144019..27144297) /locus_tag="TCM_015282" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23365.1" /translation="MNNEDNKYPNQKRWSTKETLPQIKKAAACSQQSNQEQSRSRETH PASRTKKGSKKKPASPQPPQQQTATTNTAHRQTHQSNICQGEPLDHEA" gene complement(27146049..27149487) /locus_tag="TCM_015283" /note="dbxref CacaoGD:Thecc1EG015283" mRNA complement(join(27146049..27146716,27148853..27149487)) /locus_tag="TCM_015283" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene31973" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(27146301..27146716,27148853..27149414)) /locus_tag="TCM_015283" /note="dbxref frave:gene31973" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23366.1" /translation="MAQTNSQARKDEESALVHSRELPDLEQSKDFRETESEEPTLGQS FELNRKNLAILAASVIVIVLIIVFSILIFSTKNPKIRVRSAVVQNLNHSTSSNPSFSM RFVTEMTVKNPNFGYFRYGSTNVTFAYRGVQLVQVLVPGARIRGFGTGKITATMDLNS NNVRNDTNLGSDIRSGFLTLTGQSKMNATAYDKEFALMHSKKTELEQSNEFTERQSEE STGKPSYELNRKNLAIIAASVVIIILIVVFSILVLNKKNPKFRVRSVMVENLNYGSSP NPSVNMTFTTEMKVKNPNFGYFRYGITNLKFAYNCKQLGLVLFPRARGV" gene complement(27146913..27148273) /locus_tag="TCM_015284" /note="dbxref CacaoGD:Thecc1EG015284" mRNA complement(27146913..27148273) /locus_tag="TCM_015284" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(27147909..27148169) /locus_tag="TCM_015284" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23367.1" /translation="MALIVSEEKKFSAVGFFMAFLPTQKRIMALQHVGKSKYSEIMCQ ISTEWSEDQEGTLTSIGSAFVKHSAPAKWEMKQDLVRILGDR" gene complement(27150107..27153329) /locus_tag="TCM_015285" /note="dbxref CacaoGD:Thecc1EG015285" mRNA complement(join(27150107..27150639,27150722..27151068, 27151633..27151895,27153067..27153329)) /locus_tag="TCM_015285" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015283t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage" CDS complement(join(27150418..27150639,27150722..27151068, 27151633..27151895,27153067..27153203)) /locus_tag="TCM_015285" /note="paralog of Thecc1EG015283t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23368.1" /translation="MLWLAAFVVVRTVIILVFAVTVMRIKNPKFWVGSAVVEDLQPHH LTPSLGIKGVRGTVALGAVGREKRGWSCVEGFRDQCGYPAKRRGCVEWWPRCGEYGKS KWQRSFGRTVGLHEEAVRGRVCTGDSKLDCIELACKFPMAQTNDQARKDEESALAHSR ELPDLEQSKDFRATESEESPSGGSFELNRKNLATFVASVIIIVPIIVFSVLVFSTKNP KFRVRSVVVENLNYSSSSNPSFSMRSVAEMTVLVPGARVGGLGTRKITATMDLNSNNV KNNTNLGSDIRSGFLTLTGQSKMSGKVYVMSSGKRTKVNSREDLQQ" gene 27155129..27156004 /locus_tag="TCM_015286" /note="dbxref CacaoGD:Thecc1EG015286" mRNA 27155129..27156004 /locus_tag="TCM_015286" /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028798001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032387t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028798001" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6669t1" CDS 27155218..27155823 /locus_tag="TCM_015286" /note="paralog of Thecc1EG032387t1" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative" /protein_id="EOY23369.1" /db_xref="Phytozome:GSVIVT01028798001" /db_xref="TAIR:AT2G46150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6K8" /translation="MAEQNYQQKNIDMESAAELKRKKRMKLFAYAAAFVVFQTIVILV FSLTVMRIKNPKFRVRSITVEDIAYTSTPNPPSFNMKFNAEVAVKNTNFGHFKFDNTT ISFDYGGVQVGEAFVAKGRAKARSTKKMNVTVDLNSNNIPANSNLASDISSGFLTLTT HTKLSGKVHLMKLIKKKKSAQMNCTMTVNLASRAIQDIKCQ" mobile_element 27157128..27157282 /note="source:scaffold_4_CACTA_0511 2499 2646" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27157519..27157593 /note="source:CACAO_on_E362_scaffold_1 4238 4310" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 27159202..27160195 /locus_tag="TCM_015287" /note="dbxref CacaoGD:Thecc1EG015287" mRNA 27159202..27160195 /locus_tag="TCM_015287" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006572" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016354t1" /inference="similar to AA sequence:ricco:30169.m006572" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13543t00001" CDS 27159267..27159911 /locus_tag="TCM_015287" /note="dbxref ricco:30169.m006572; paralog of Thecc1EG016354t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23370.1" /translation="MEAKSQSPYPLVPAANGHERSDEESVAAHSKELKKKKRMKCLLY IVLFAVFQTGIILLFALTVMRIRNPKFRVRSGSFTTFNVGTEASPSFDLQMNTQFTVK NTNFGHFKYEGGLVTFAYRGTPVGRATIQKARARARSTKKVDVVVELSSNGLPNTNEL GRDISAGVLTLTSSSKLDGKIHLMKVIKKKKSTQMNCTMDVAIDTRTVRNIICK" gene complement(27163669..27165947) /locus_tag="TCM_015288" /note="dbxref CacaoGD:Thecc1EG015288" mRNA complement(join(27163669..27164337,27164443..27164514, 27164603..27165947)) /locus_tag="TCM_015288" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s00970.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s00970.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9304t1" mRNA complement(join(27163688..27164337,27164443..27164511, 27164603..27165871)) /locus_tag="TCM_015288" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s00970.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s00970.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc418t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9304t1" mRNA complement(join(27163845..27164337,27164443..27164512, 27164603..27165780)) /locus_tag="TCM_015288" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s00970.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s00970.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7411t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9304t1" CDS complement(join(27164237..27164337,27164443..27164511, 27164603..27165620)) /locus_tag="TCM_015288" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY23373.1" /db_xref="Phytozome:POPTR_0012s00970.1" /db_xref="TAIR:AT5G52870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I501" /translation="MDALNFLRFWKPSYGAHKENRNQPCCGNSGTAEVPKSSVVSDHE LDEGEDSFIDLELPLHEFDNKGDLHSNNSEENGVRAKKRYDSREDRVLQESAKNVGDK DLDLPQQTRSLSPNDHFSKRKIMPIEPSSKPQSPIALLKSAPKFRVFTLKKSKSMANA NTYRAEKTEFIGISMETPKRENQGSSKHLKVTFKIEESPNLPIFTRENSLRKTKGKTE DSLSDDSSKRLSKDLIQKYLNIIKPLYVKVSKRNSQSDKTKALGDLSISSPAASPATV YSLKEKQGNHSTGVRGVCKHLGKSRSASAAASPISRRDDSLVLQHDGIQSAILHCKRS FNSSGESSWLSRCTSDSSQEKLSNASSTDSSLLSRVTSNSSYDKLMDSSRIYSEEGNV FST" CDS complement(join(27164237..27164337,27164443..27164514, 27164603..27165620)) /locus_tag="TCM_015288" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23371.1" /db_xref="Phytozome:POPTR_0012s00970.1" /db_xref="TAIR:AT5G52870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I501" /translation="MDALNFLRFWKPSYGAHKENRNQPCCGNSGTAEVPKSSVVSDHE LDEGEDSFIDLELPLHEFDNKGDLHSNNSEENGVRAKKRYDSREDRVLQESAKNVGDK DLDLPQQTRSLSPNDHFSKRKIMPIEPSSKPQSPIALLKSAPKFRVFTLKKSKSMANA NTYRAEKTEFIGISMETPKRENQGSSKHLKVTFKIEESPNLPIFTRENSLRKTKGKTE DSLSDDSSKRLSKDLIQKYLNIIKPLYVKVSKRNSQSDKTKALGDLSISSPAASPATV YSLKEKQGNHSTGVRGVCKHLGKSRSASAAASPISRRDDSLVLQHDGIQSAILHCKRS FNSSGAESSWLSRCTSDSSQEKLSNASSTDSSLLSRVTSNSSYDKLMDSSRIYSEEGN VFST" CDS complement(join(27164481..27164512,27164603..27165620)) /locus_tag="TCM_015288" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY23372.1" /db_xref="Phytozome:POPTR_0012s00970.1" /db_xref="TAIR:AT5G52870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I501" /translation="MDALNFLRFWKPSYGAHKENRNQPCCGNSGTAEVPKSSVVSDHE LDEGEDSFIDLELPLHEFDNKGDLHSNNSEENGVRAKKRYDSREDRVLQESAKNVGDK DLDLPQQTRSLSPNDHFSKRKIMPIEPSSKPQSPIALLKSAPKFRVFTLKKSKSMANA NTYRAEKTEFIGISMETPKRENQGSSKHLKVTFKIEESPNLPIFTRENSLRKTKGKTE DSLSDDSSKRLSKDLIQKYLNIIKPLYVKVSKRNSQSDKTKALGDLSISSPAASPATV YSLKEKQGNHSTGVRGVCKHLGKSRSASAAASPISRRDDSLVLQHDGIQSAILHCKRS FNSSGGIFMVVEMYK" mobile_element 27165836..27165887 /note="source:scaffold_6_CACTA_0717 7603 7658" /mobile_element_type="transposon:TIR/CACTA" gene complement(27169095..27170006) /locus_tag="TCM_015289" /note="dbxref CacaoGD:Thecc1EG015289" mRNA complement(27169095..27170006) /locus_tag="TCM_015289" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.76 coverage" CDS complement(27169453..27169785) /locus_tag="TCM_015289" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23374.1" /translation="MPSKMASSPSCSLPICFTFLIFIPTVFLINTVLQPSRESIKMHG ENSKQKPVFSNGDDHPLISIVCSNTSRPEYCLKCFYSNPQIKQETDIRRLCSVSIDCA LYQSLALG" mobile_element complement(27170527..27170602) /note="source:CACAO_on_E172_scaffold_5 367 463" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 27173129..27175183 /locus_tag="TCM_015290" /note="dbxref CacaoGD:Thecc1EG015290" mRNA join(27173129..27173372,27173981..27174161, 27174245..27174386,27174603..27174672,27174766..27175183) /locus_tag="TCM_015290" /product="VIRB2-interacting protein 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10040.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005247t1" /inference="similar to AA sequence:Phytozome:Glyma08g02250.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11949t00001" CDS join(27173192..27173372,27173981..27174161, 27174245..27174386,27174603..27174672,27174766..27174935) /locus_tag="TCM_015290" /note="paralog of Thecc1EG005247t1" /codon_start=1 /product="VIRB2-interacting protein 2" /protein_id="EOY23375.1" /db_xref="Phytozome:Glyma08g02250.1" /db_xref="TAIR:AT4G11220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUR3" /translation="MAEHEETLVEKVAEEIQGDASSSSSDSDDDKPFHADALKSKVYR LFGREKPIHHVLGAGKPADVFLWRDKKISAGVLGGATALWILFEMLEYHLITLLCHTL ILSLAILFLWSNASTFINKSPPNIPEVVLPEKCVLEVASALRIEVNRALDVVRDIASG NDLKKFLGVIVGLWALSLVGNCCNFLTLFYIVFVLLHTVPVFYEIYEDQVDSFSEKAI IEIKKQYAAFDEKVLSKIPKGPLKEKKKD" gene complement(27176880..27179406) /locus_tag="TCM_015291" /note="dbxref CacaoGD:Thecc1EG015291" mRNA complement(join(27176880..27177183,27177253..27177398, 27177620..27177816,27177939..27178026,27178129..27178283, 27179156..27179406)) /locus_tag="TCM_015291" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028794001" /inference="similar to AA sequence:Phytozome:GSVIVT01028794001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10289t00001" CDS complement(join(27177630..27177816,27177939..27178026, 27178129..27178283,27179156..27179340)) /locus_tag="TCM_015291" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY23376.1" /db_xref="Phytozome:GSVIVT01028794001" /db_xref="TAIR:AT5G52880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIQ5" /translation="MSNSTERYQKLGLRESLTRIYQYPIACKELSSILRGAYGKLPKN LQALIFQDTLTAFRLLPEMQTRSANAAAQLLLQSAESALPKQKKSLVVTEFKQAKVAY IRRSRAHREETVSAQLPQDVLVHIFSLLDLQSLISVTLVCRSWSLAANDSHLWELQYT TVFGRSKTCSRTKMQQSSRLVKEDYMFLKENGDTKTHIHWKESF" gene complement(27179849..27188347) /locus_tag="TCM_015292" /note="dbxref CacaoGD:Thecc1EG015292" mRNA complement(join(27179849..27180661,27181237..27181368, 27181488..27181556,27181635..27181770,27182230..27182798, 27183246..27183386,27183491..27183578,27183693..27184189, 27184471..27184535,27185331..27185431,27185569..27185635, 27185756..27185776,27185864..27185957,27186235..27186270, 27186353..27186441,27186538..27186659,27187730..27188347)) /locus_tag="TCM_015292" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006569.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016363t1" /inference="similar to AA sequence:ricco:30169.m006569" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1202t2" CDS complement(join(27180548..27180661,27181237..27181368, 27181488..27181556,27181635..27181770,27182230..27182798, 27183246..27183386,27183491..27183578,27183693..27184189, 27184471..27184535,27185331..27185431,27185569..27185635, 27185756..27185776,27185864..27185957,27186235..27186270, 27186353..27186441,27186538..27186659,27187730..27187947)) /locus_tag="TCM_015292" /note="dbxref ricco:30169.m006569; paralog of Thecc1EG016363t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY23377.1" /db_xref="TAIR:AT4G28000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CUQ3" /translation="MEQKRILLSALSVGVGVGVGLGLASGQTVSKWAGKSSAEDGITG EQIEQELMRQVVDGKLSTVTFDDFPYYLSERTRVLLTSAAYVQLKHNDVSKHTRNLSP VSRAILLSGPAELYQQMLAKALAHDFESKLLLLDITDFSLKMQSKYGCTKKEPSFKRS ISEMTLERMNSLFGSFSLLLPREETSVLVLVILVLIKIFPTGTLRRQGSGIDIKSRAV EGSSNLPKLRRNASTASDMSSISSNCTLTNPASHKRTSSWCFDQKLFLQSLYKVLVSV SETGSIILYLRDVEKLLLRSQRLYNLFQKLLNKLSGSVLILGSRMLDPEDDRREVDQR LSVLFPYNIEIKPPEDETRLDSWKAQLEEDMKVLQIQDNRNHIAEVLAANDLECDDLG SICQADTMILSNYIEEIVVSAISYHLMNNKDPEYRNGKLVISSKSLSHGLNIFQEGKS CGKDTLKLEANADSAKENEGEEAVGAKTESKSETPASESKSETEKSIPAAKKDGDNPP APKAPEVPPDNEFEKRIRPEVIPANEIGVTFADIGAMDEIKESLQELVMLPLRRPDLF KGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRA LFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKTGERILV LAATNRPFDLDEAIIRRFERRIMVGLPSIESRELILKTLLAKEKVEDLDFKELATMTE GYSGSDLKNLCVTAAYRPVRELIQQERLKDLEKKKREEAGKSSEDASETKEEDKEERV ITLRPLNLEDLRQAKNQVAASFASEGSIMGELKQWNDLYGEGGSRKKQQLTYFL" gene 27198887..27203327 /locus_tag="TCM_015293" /note="dbxref CacaoGD:Thecc1EG015293" mRNA join(27198887..27199126,27199975..27200098, 27200719..27201228,27201390..27202160,27202336..27202367, 27202451..27203327) /locus_tag="TCM_015293" /product="SLAC1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400034642" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016116t4" /inference="similar to AA sequence:Phytozome:GSVIVT01028789001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4350t2_C2" mRNA join(27198903..27199126,27199975..27200098, 27200719..27201228,27201390..27202160,27202336..27202371, 27202451..27203157) /locus_tag="TCM_015293" /product="SLAC1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400014888" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400034642" /inference="similar to AA sequence:ricco:30169.m006568" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc5458t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4350t2_C2" mRNA join(27198903..27199126,27199975..27200098, 27200719..27201228,27201390..27202160,27202336..27202367, 27202451..27202586,27202676..27203157) /locus_tag="TCM_015293" /product="SLAC1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400014888" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400034642" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016116t4" /inference="similar to AA sequence:ricco:30169.m006568" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc5458t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4350t2_C2" CDS join(27199985..27200098,27200719..27201228, 27201390..27202160,27202336..27202367,27202451..27202829) /locus_tag="TCM_015293" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016116t4" /codon_start=1 /product="SLAC1, putative isoform 1" /protein_id="EOY23378.1" /db_xref="Phytozome:GSVIVT01028789001" /db_xref="TAIR:AT5G24030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLV9" /translation="MDRGEHLVSVELQESPEPVPSLLKVISSNEVAGFDSIIQESETS FSNPFNISQPTGHQRKLSISISMPSSPTTASSAGTKSVFFLDDNAKDFRDGVPDSSQS SETLGNREPKRVKFLSQPMPKGSVFGEAANIRNINHHPSIKKLKDKRFDSFKTWSGRL ERQLSNLRGKPRGSESEEDSVRRNPENEALPVDRYFDALEGPELETLRASEEIVLPDD KTWPFLLRYPISSFGICLGVSSQAVMWKTLATANSTKFLHISLIVNLILWWISVALVV IVSSIYLLKVILYFEAVRREYYHPIRVNFFFAPWITLLFLALGVPPSVASSLPVALWY VLMTPIFCLELKIYGQWMSGGQRRLSKVANPSNHLSIVGNFVGAQLGASMGLKEGPIF FFAVGLAHYTVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWATIQGFFDYG SRIAYFIALFLYFSLAVRVNFFRGFKFSLAWWAYTFPMTGAAVATMRYSSAVTNIVTQ TLSIILSVVATLTVTALLITTILHAFVLRDLFPNDIAIAIAISDRKPKPHKKWFNVRQ GSSDHSKDIETFLKFANADSKDIEAALKIPTAEAK" CDS join(27199985..27200098,27200719..27201228, 27201390..27202160,27202336..27202367,27202451..27202586, 27202676..27202699) /locus_tag="TCM_015293" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006568; paralog of Thecc1EG016116t4" /codon_start=1 /product="SLAC1, putative isoform 2" /protein_id="EOY23379.1" /db_xref="TAIR:AT5G24030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLV9" /translation="MDRGEHLVSVELQESPEPVPSLLKVISSNEVAGFDSIIQESETS FSNPFNISQPTGHQRKLSISISMPSSPTTASSAGTKSVFFLDDNAKDFRDGVPDSSQS SETLGNREPKRVKFLSQPMPKGSVFGEAANIRNINHHPSIKKLKDKRFDSFKTWSGRL ERQLSNLRGKPRGSESEEDSVRRNPENEALPVDRYFDALEGPELETLRASEEIVLPDD KTWPFLLRYPISSFGICLGVSSQAVMWKTLATANSTKFLHISLIVNLILWWISVALVV IVSSIYLLKVILYFEAVRREYYHPIRVNFFFAPWITLLFLALGVPPSVASSLPVALWY VLMTPIFCLELKIYGQWMSGGQRRLSKVANPSNHLSIVGNFVGAQLGASMGLKEGPIF FFAVGLAHYTVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWATIQGFFDYG SRIAYFIALFLYFSLAVRVNFFRGFKFSLAWWAYTFPMTGAAVATMRYSSAVTNIVTQ TLSIILSVVATLTRQKTKTS" CDS join(27199985..27200098,27200719..27201228, 27201390..27202160,27202336..27202371,27202451..27202648) /locus_tag="TCM_015293" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006568" /codon_start=1 /product="SLAC1 isoform 3" /protein_id="EOY23380.1" /db_xref="TAIR:AT5G24030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLV9" /translation="MDRGEHLVSVELQESPEPVPSLLKVISSNEVAGFDSIIQESETS FSNPFNISQPTGHQRKLSISISMPSSPTTASSAGTKSVFFLDDNAKDFRDGVPDSSQS SETLGNREPKRVKFLSQPMPKGSVFGEAANIRNINHHPSIKKLKDKRFDSFKTWSGRL ERQLSNLRGKPRGSESEEDSVRRNPENEALPVDRYFDALEGPELETLRASEEIVLPDD KTWPFLLRYPISSFGICLGVSSQAVMWKTLATANSTKFLHISLIVNLILWWISVALVV IVSSIYLLKVILYFEAVRREYYHPIRVNFFFAPWITLLFLALGVPPSVASSLPVALWY VLMTPIFCLELKIYGQWMSGGQRRLSKVANPSNHLSIVGNFVGAQLGASMGLKEGPIF FFAVGLAHYTVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWATIQGFFDYG SRIAYFIALFLYFSLAVRVNFFRGFKYVLIGLVGIYFPNDWCCRCYHEIFKCSDEYSN SNSFYHTLCCCYTHSNSPAHNDYIACFCPTRPLP" gene complement(27205709..27212053) /locus_tag="TCM_015294" /note="dbxref CacaoGD:Thecc1EG015294" mRNA complement(join(27205709..27206703,27206796..27207460, 27209510..27209667,27209767..27209843,27210543..27210602, 27210749..27210818,27211463..27212053)) /locus_tag="TCM_015294" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01020.1" /inference="similar to AA sequence:ricco:30169.m006567" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13437t00001" CDS complement(join(27206696..27206703,27206796..27207450)) /locus_tag="TCM_015294" /note="dbxref ricco:30169.m006567" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23381.1" /db_xref="TAIR:AT5G52900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N342" /translation="METSQPLSIESFSYSWLVNLKPSLESLDSSLRASLDACDEASFI EMDPRMPPSRRFFRNSQDFKFDFPISQTPLTLVHADELFSNGYVMPFFVNPLKMEAYE VSNSTSTLPTSSHAPNLVVPACKTSHPSLRRCRRLSKRIFLKYLDFLRPLYRRIRGRK SSGRAESVDARVQVMKKWVYSAETSPRVSVAYSADEWRKSCDSESSIYEAVLHCKRSI GK" gene 27212707..27217192 /locus_tag="TCM_015295" /note="dbxref CacaoGD:Thecc1EG015295" mRNA join(27212707..27213408,27213690..27215059, 27215143..27215323,27215542..27215995,27216401..27217192) /locus_tag="TCM_015295" /product="G-type lectin S-receptor serine/threonine-protein kinase" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400050355" /inference="similar to AA sequence:ricco:30169.m006565" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc654t1" CDS join(27213158..27213408,27213690..27215059, 27215143..27215323,27215542..27215995,27216401..27216739) /locus_tag="TCM_015295" /note="dbxref ricco:30169.m006565" /codon_start=1 /product="G-type lectin S-receptor serine/threonine-protein kinase" /protein_id="EOY23382.1" /db_xref="TAIR:AT5G24080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLV4" /translation="MANSCLCSTCFFFFLVMVWFSGCIAGQIGLGSRLLASDQGRPWV SDNGTFAFGFTPSDNRDRFLLGIWFAELPGDRTVVWSANGNSPVTEDAILELDTTGNL VLIDGDATVWTSNTSGTRVEFAVMSESGNFILYTANNRPAWQSFEHPSDTLLPNQPLT VSLELTSSKSPSHGGYYALKMLQQPTSLTLALTYNLPDSYDASPEAYTNYSYWAAPDI SNVTGDVVAVLDEAGSFGIVYGESSNGAVYVHKNDGDYNGLASATNQSNVRLSVLRRL IIETNGNLRMYRWDNDVNGSRQWVPEWAAVSNPCDIAGICGNGICNLDRSKTNASCKC LPGTYKVGSAGESYCSQNSSLTRNCDSRNKNYTSQFKIATEQQTNYYFSYFSVIANYS DIATVSKCGDACLSDCDCVASVYGLDDEKPYCWILKSLDYGGFEDPGSTLFVKVRSDL SFEPSDHTRGSGDSSEGSGNGREKILVLPIVLGMSFLIGLLCLLLYYNVHRRKYLKKA IESSLILEGAPLNFSYRDLLLRTCNFSQLLGTGGFGSVYKGSLTDGTLVAVKKLDRVL PHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSQRLLVYEFMKNGSLDKWIFPSYQSR DRLLDWPTRFNIAVATAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAK LMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEILGGRRNLDMSFD AEDFFYPGWAYKELTNGTPIKVADRRLGGAVDEEELTRALKVAFWCIQDEVFMRPSMG EVVKMLEGSMDINEPPIPQTVLELVEEGLEQVYKAMKRDFNQSSSFTITTRPSSQATC SYSTMSPR" gene 27218118..27225318 /locus_tag="TCM_015296" /note="dbxref CacaoGD:Thecc1EG015296" mRNA join(27218118..27219284,27219481..27219881, 27219972..27220094,27220583..27220724,27220838..27221115, 27221359..27221417,27221516..27221610,27221999..27222101, 27222212..27222306,27222387..27222449,27223307..27223382, 27223477..27223585,27223781..27223893,27224029..27224087, 27224395..27224503,27224779..27225318) /locus_tag="TCM_015296" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05800.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05800.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc887t8; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc887t8" CDS join(27219491..27219881,27219972..27220094, 27220583..27220724,27220838..27221115,27221359..27221417, 27221516..27221610,27221999..27222101,27222212..27222306, 27222387..27222449,27223307..27223382,27223477..27223585, 27223781..27223893,27224029..27224087,27224395..27224503, 27224779..27224913) /locus_tag="TCM_015296" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY23383.1" /db_xref="Phytozome:POPTR_0015s05800.1" /translation="MENMQYAEELVREYLVFRGFTNTLQAFETELCTDIGKGFQVNKI LDLIFAVYIPKFQAEKLVGLFSFFKQCFSSWSETVVLDTLSKLEGSILQCYIVHALQS GRKDKVVEFFGMNGNDRLLKSYDWIPWFAIPYLKNPSLDPQFRVYFSKEWYEALRLSV RNFFSEIFNGTRLPALLKISSEKNTISRLKKDNKHLNLKLSQLQALLEEKEVQSGQSK RSMGATTSSTTSSGVDDENLHLSTSSEEQCAPATAHLSKRELSEECSATEPAQIIASR VKSSSGHDLFSASTLHASYSGVDDTAPRFYGSHFIENGRDVLREEEFPEVSAEFQETF LGHTSPITRCQFSASGNNIASASVDGTVRIWTYDSSISASRNATIYCGAEIMSLDWEC KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTEAFPSVLDLKCSPVEPIFVSAASSRR LGSNSIDSLGYASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASATDGMI HMFDMSAGLQITGWPAHDTAISSLLFGPDETSIFSLGSDGKIFEWSLQNQGHVLWSRT CSRFSDHETSKYCRHEMALEANGRQLLVTSGSVRAPIYQVRGHSNGLRTLPHSAAITT VDWHPSLPIFLTGSADNSVRVTSIL" mRNA join(27219906..27220724,27220838..27221115, 27221359..27221417,27221516..27221610,27221999..27222101, 27222212..27222306,27222387..27222449,27223307..27223382, 27223477..27223585,27223781..27223893,27224029..27224087, 27224395..27224503,27224779..27225134) /locus_tag="TCM_015296" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05800.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05800.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1360t11_C2; alternateUTRof:Thecc1EG015296t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc887t8" mRNA join(27220001..27220094,27220543..27220724, 27220838..27221115,27221359..27221417,27221516..27221610, 27221999..27222101,27222212..27222306,27222387..27222449, 27223307..27223382,27223477..27223585,27223781..27223893, 27224029..27224087,27224395..27224503,27224779..27225318) /locus_tag="TCM_015296" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05800.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05800.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc887t13; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc887t8" CDS join(27220564..27220724,27220838..27221115, 27221359..27221417,27221516..27221610,27221999..27222101, 27222212..27222306,27222387..27222449,27223307..27223382, 27223477..27223585,27223781..27223893,27224029..27224087, 27224395..27224503,27224779..27224913) /locus_tag="TCM_015296" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY23384.1" /db_xref="Phytozome:POPTR_0015s05800.1" /translation="MSLTKPRLPALLKISSEKNTISRLKKDNKHLNLKLSQLQALLEE KEVQSGQSKRSMGATTSSTTSSGVDDENLHLSTSSEEQCAPATAHLSKRELSEECSAT EPAQIIASRVKSSSGHDLFSASTLHASYSGVDDTAPRFYGSHFIENGRDVLREEEFPE VSAEFQETFLGHTSPITRCQFSASGNNIASASVDGTVRIWTYDSSISASRNATIYCGA EIMSLDWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTEAFPSVLDLKCSPVEPI FVSAASSRRLGSNSIDSLGYASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL AASATDGMIHMFDMSAGLQITGWPAHDTAISSLLFGPDETSIFSLGSDGKIFEWSLQN QGHVLWSRTCSRFSDHETSKYCRHEMALEANGRQLLVTSGSVRAPIYQVRGHSNGLRT LPHSAAITTVDWHPSLPIFLTGSADNSVRVTSIL" CDS join(27220564..27220724,27220838..27221115, 27221359..27221417,27221516..27221610,27221999..27222101, 27222212..27222306,27222387..27222449,27223307..27223382, 27223477..27223585,27223781..27223893,27224029..27224087, 27224395..27224503,27224779..27224913) /locus_tag="TCM_015296" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY23385.1" /db_xref="Phytozome:POPTR_0015s05800.1" /translation="MSLTKPRLPALLKISSEKNTISRLKKDNKHLNLKLSQLQALLEE KEVQSGQSKRSMGATTSSTTSSGVDDENLHLSTSSEEQCAPATAHLSKRELSEECSAT EPAQIIASRVKSSSGHDLFSASTLHASYSGVDDTAPRFYGSHFIENGRDVLREEEFPE VSAEFQETFLGHTSPITRCQFSASGNNIASASVDGTVRIWTYDSSISASRNATIYCGA EIMSLDWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTEAFPSVLDLKCSPVEPI FVSAASSRRLGSNSIDSLGYASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL AASATDGMIHMFDMSAGLQITGWPAHDTAISSLLFGPDETSIFSLGSDGKIFEWSLQN QGHVLWSRTCSRFSDHETSKYCRHEMALEANGRQLLVTSGSVRAPIYQVRGHSNGLRT LPHSAAITTVDWHPSLPIFLTGSADNSVRVTSIL" mobile_element complement(27225133..27225175) /note="source:scaffold_5_CACTA_0580 13320 13362" /mobile_element_type="transposon:TIR/CACTA" gene complement(27225628..27230147) /locus_tag="TCM_015297" /note="dbxref CacaoGD:Thecc1EG015297" mRNA complement(join(27225628..27228619,27229638..27230147)) /locus_tag="TCM_015297" /product="Disease resistance family protein / LRR family protein, putative" /inference="alignment:exonerate- protein:2:frave:gene24818.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045317t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05940.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS complement(27225854..27228517) /locus_tag="TCM_015297" /note="paralog of Thecc1EG045317t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein, putative" /protein_id="EOY23386.1" /db_xref="Phytozome:POPTR_0015s05940.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NER8" /translation="MRMSLVWSLLLSTLFIGFLLEEHLTLGSSLLLGEVDVTRCRENE RQALLIFKRSLVDDSGILSSWGNGDDRKDCCIWRGVVCSNRTGHVLMLNLQPTYGYLG GTISPSLLDLSHLNYLDLSFNTFNGSNIPEFIGSLRNLRYLGLSHAAFSGPIPYQLGN LSRLLSLDLSGNDLYSGRNLNWLSHLSSLKNLDLSFSNLSKANDWVQVVNKLPFLESL SLQSCNLPNIISPSLSLVNSSTALTSLELFGYNLTSPVIYPWLFNVSSNLVYLDLSLN QLKGSIPEAFGNMSALKQLSLFSNQLEGGIPKSFRNMCSLESLLLHHNSLSGDFTEYT QNLSGCTEHSLKILVLDNNQITGSIPDQMARFSLLTDLSLGNNRLHGTISEGIGHLSE LEILDLHGNSLKGVILETHFSNLSNLQTLDLSYNSFSLEFSNNWVPPFRLSFIRLGSC KSGPRFPKWIQSQNNFAELDISAAEISDTIPLWFWDLSPSLRYLNLSYNQISGILPDL SLKFVSFPGLDLRSNLLDGPLPLFPSKSTSLNLSKNRFSGSISSLCRITGEALQFLDL SENLLSGTVPNCFQQWPYLQVLNLANNNFSGRLPSSIGSLVSLVMFNLHNNSFSGELP SSLNNCTEVKFMDLSDNRLSGEILAWMGQSLTSLVFLSLQANKFNGSTPYHLCQLAHI QILDLSRNKLSGSIPECINSLTSMARKGNLSTTIQQNYVYGDPQFGDIGPYIDKALLV WKGREYEYTKNLGLLIVIDLSSNELSGEIPGEIARLSGLVALNLSWNILTGVIPQKIG QLRQLEVLDLSRNRLSGEIPTSLAELTFLSHLDLSYNNLSGKIPLSTQLQNFDASAFA NTVDLQFRQVAQRLKRNNFNQETLIKKMKMS" mobile_element complement(27228849..27228927) /note="source:CACAO_M_S_E98417_F15_scaffold_8 1188 1260" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27229273..27240506) /locus_tag="TCM_015298" /note="dbxref CacaoGD:Thecc1EG015298" mRNA complement(join(27229273..27229902,27230493..27230739, 27232175..27232402,27232627..27232695,27232918..27233127, 27233400..27233504,27233903..27234273,27234368..27234895, 27235575..27235653,27236175..27236341,27236805..27237017, 27238277..27238407,27238541..27238733,27238822..27238959, 27239056..27239362,27239659..27239818,27239937..27240089, 27240199..27240506)) /locus_tag="TCM_015298" /product="Timeless family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028757001" /inference="similar to AA sequence:Phytozome:GSVIVT01028757001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc535t10; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc535t10" mRNA complement(join(27229273..27229902,27230493..27230739, 27232175..27232402,27232627..27232695,27232918..27233127, 27233400..27233522,27233903..27234273,27234368..27234895, 27235575..27235653,27236175..27236341,27236805..27237017, 27238277..27238407,27238541..27238733,27238822..27238959, 27239056..27239362,27239659..27239818,27239937..27240089, 27240199..27240506)) /locus_tag="TCM_015298" /product="Timeless family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028757001" /inference="similar to AA sequence:Phytozome:GSVIVT01028757001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc535t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc535t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7419t4" CDS complement(join(27230508..27230739,27232175..27232402, 27232627..27232695,27232918..27233127,27233400..27233504, 27233903..27234273,27234368..27234895,27235575..27235653, 27236175..27236341,27236805..27237017,27238277..27238407, 27238541..27238733,27238822..27238959,27239056..27239362, 27239659..27239818,27239937..27240089,27240199..27240301)) /locus_tag="TCM_015298" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Timeless family protein, putative isoform 1" /protein_id="EOY23387.1" /db_xref="Phytozome:GSVIVT01028757001" /db_xref="TAIR:AT5G52910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9A6" /translation="MDMEGLSVICASLGILEEDQTTKQIVYTKGEHCLDALKDLLRFL RRDNPETREVFKQVCRWNIVSKNLIPIIEHWQHDRNLVLNAVKVLVFLSMPIEPSSSD VPQQIEYLWDIKFSLTGSDAVAVIVSLLEGPLENLEYEVFTEDDWKLVQLVVTLFRNV LAIQDFSLLQKAGQFLSLRDRFLELLFRENVMELIIVITQHIGGSRGYLRQDNLLLLE TFHYIFMNQDPELLSKAHLKGSTEGGDAKACIDDLKSIMEEEAKKRRVSRLHHTGRHS QFSGTFTRLTMDGSTAVYKGNPDSASQNVLLKSHKGHGISTQKIVRGHGQLPSTRNNI LELLHDFVNQFLSGGYNVLMKSIREDIEKEHHAIQKGDIIVFFKVAEFVTSFQYHKFL TSKPTVENPTPEVSADKCADSTFFKGDICGPIAASMNESMFQLVISRWRNAFEGLKET NDYKFLSAASSLMKNMIRMLDLVLNLFPEDSKEPRTARMLLYKLFYDQTDQGMTQFLL NLIKMFNSRKQPKSDLADLVEMMHLIIQLMENLQARGSLRVSKKSRKGRKKKVVSDNV TKSEQFEDHAAAPDGVGTSVCEQSAAYVSEKESPVKGTSDWKEDTSTPLLVDELGKSE TKMECPGDLPQVDNNTPGHADDDLCCSTDDSSGDEQPATVNEVDFKVSTLTSAFANCS IIQNLCWLLKFYRSNSINTNHYILGMLRKITDDLELAPMLYQLSLLTTFYDILEEQKS CPSEEHADIVGFITSLVRNMLKKMKNQPLLFIEILFWKTRRECHYINAEYLLHELGHW KKGSKTQDSAPRNGEIGSSEASEWVGRSIADALGEDEADVVISHERGHLNGENSMENK TGKINERKRRLVLNDDMETKLKELYEKFKDHPNCIRLIAESLDPDGGILPAQVSNKLK QLGLKVAPKKRTRGSDQQGDKSTLHDSNDLEGSSQRQPLNTRKRVRAFSKDQEAMIKD LFEQYKDHRRCSYMIANALDADNMFTAAQVSRKLKQLGLHVPRQKRSEDNMHLRDEEL NDLSADETCDSDNETLLSFRNSDGSNQFSEIDVIFHQESRDTVNLSRVSTENIEGELA HQQAEDELADSGDDVASGSFVESTINRRKLRMVIDPEDDD" CDS complement(join(27230508..27230739,27232175..27232402, 27232627..27232695,27232918..27233127,27233400..27233522, 27233903..27234273,27234368..27234895,27235575..27235653, 27236175..27236341,27236805..27237017,27238277..27238407, 27238541..27238733,27238822..27238959,27239056..27239362, 27239659..27239818,27239937..27240089,27240199..27240301)) /locus_tag="TCM_015298" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Timeless family protein, putative isoform 2" /protein_id="EOY23388.1" /db_xref="Phytozome:GSVIVT01028757001" /db_xref="TAIR:AT5G52910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9A6" /translation="MDMEGLSVICASLGILEEDQTTKQIVYTKGEHCLDALKDLLRFL RRDNPETREVFKQVCRWNIVSKNLIPIIEHWQHDRNLVLNAVKVLVFLSMPIEPSSSD VPQQIEYLWDIKFSLTGSDAVAVIVSLLEGPLENLEYEVFTEDDWKLVQLVVTLFRNV LAIQDFSLLQKAGQFLSLRDRFLELLFRENVMELIIVITQHIGGSRGYLRQDNLLLLE TFHYIFMNQDPELLSKAHLKGSTEGGDAKACIDDLKSIMEEEAKKRRVSRLHHTGRHS QFSGTFTRLTMDGSTAVYKGNPDSASQNVLLKSHKGHGISTQKIVRGHGQLPSTRNNI LELLHDFVNQFLSGGYNVLMKSIREDIEKEHHAIQKGDIIVFFKVAEFVTSFQYHKFL TSKPTVENPTPEVSADKCADSTFFKGDICGPIAASMNESMFQLVISRWRNAFEGLKET NDYKFLSAASSLMKNMIRMLDLVLNLFPEDSKEPRTARMLLYKLFYDQTDQGMTQFLL NLIKMFNSRKQPKSDLADLVEMMHLIIQLMENLQARGSLRVSKKSRKGRKKKVVSDNV TKSEQFEDHAAAPDGVGTSVCEQSAAYVSEKESPVKGTSDWKEDTSTPLLVDELGKSE TKMECPGDLPQVDNNTPGHADDDLCCSTDDSSGDEQPATVNEVDFKVSTLTSAFANCS IIQNLCWLLKFYRSNSINTNHYILGMLRKITDDLELAPMLYQLSLLTTFYDILEEQKS CPSEEHADIVGFITSLVRNMLKKMKNQPLLFIEILFWKTRRECHYINAEYLLHELGHW KKGSKTQDSAPRNGEIGSSEASEWVGRSIADALGEDEADVVISHERGHLNESGWCSGE NSMENKTGKINERKRRLVLNDDMETKLKELYEKFKDHPNCIRLIAESLDPDGGILPAQ VSNKLKQLGLKVAPKKRTRGSDQQGDKSTLHDSNDLEGSSQRQPLNTRKRVRAFSKDQ EAMIKDLFEQYKDHRRCSYMIANALDADNMFTAAQVSRKLKQLGLHVPRQKRSEDNMH LRDEELNDLSADETCDSDNETLLSFRNSDGSNQFSEIDVIFHQESRDTVNLSRVSTEN IEGELAHQQAEDELADSGDDVASGSFVESTINRRKLRMVIDPEDDD" mRNA complement(join(<27230714..27230739,27230973..27231086, 27232175..27232402,27232627..27232695,27232918..27233127, 27233400..27233504,27233903..27234273,27234368..27234895, 27235575..27235653,27236175..27236341,27236805..27237017, 27238277..27238407,27238541..27238733,27238822..27238959, 27239056..27239362,27239659..27239818,27239937..27240089, 27240199..27240506)) /locus_tag="TCM_015298" /product="Timeless family protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028757001" /inference="similar to AA sequence:Phytozome:GSVIVT01028757001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc535t5; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc535t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7419t4" mRNA complement(join(<27230714..27230739,27231500..27231604, 27232175..27232402,27232627..27232695,27232918..27233127, 27233400..27233504,27233903..27234273,27234368..27234895, 27235575..27235653,27236175..27236341,27236805..27237017, 27238277..27238407,27238541..27238733,27238822..27238959, 27239056..27239362,27239659..27239818,27239937..27240089, 27240199..27240506)) /locus_tag="TCM_015298" /product="Timeless family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028757001" /inference="similar to AA sequence:Phytozome:GSVIVT01028757001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc535t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc535t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7419t4" CDS complement(join(<27230715..27230739,27230973..27231086, 27232175..27232402,27232627..27232695,27232918..27233127, 27233400..27233504,27233903..27234273,27234368..27234895, 27235575..27235653,27236175..27236341,27236805..27237017, 27238277..27238407,27238541..27238733,27238822..27238959, 27239056..27239362,27239659..27239818,27239937..27240089, 27240199..27240301)) /locus_tag="TCM_015298" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Timeless family protein, putative isoform 4" /protein_id="EOY23390.1" /db_xref="Phytozome:GSVIVT01028757001" /db_xref="TAIR:AT5G52910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9A6" /translation="MDMEGLSVICASLGILEEDQTTKQIVYTKGEHCLDALKDLLRFL RRDNPETREVFKQVCRWNIVSKNLIPIIEHWQHDRNLVLNAVKVLVFLSMPIEPSSSD VPQQIEYLWDIKFSLTGSDAVAVIVSLLEGPLENLEYEVFTEDDWKLVQLVVTLFRNV LAIQDFSLLQKAGQFLSLRDRFLELLFRENVMELIIVITQHIGGSRGYLRQDNLLLLE TFHYIFMNQDPELLSKAHLKGSTEGGDAKACIDDLKSIMEEEAKKRRVSRLHHTGRHS QFSGTFTRLTMDGSTAVYKGNPDSASQNVLLKSHKGHGISTQKIVRGHGQLPSTRNNI LELLHDFVNQFLSGGYNVLMKSIREDIEKEHHAIQKGDIIVFFKVAEFVTSFQYHKFL TSKPTVENPTPEVSADKCADSTFFKGDICGPIAASMNESMFQLVISRWRNAFEGLKET NDYKFLSAASSLMKNMIRMLDLVLNLFPEDSKEPRTARMLLYKLFYDQTDQGMTQFLL NLIKMFNSRKQPKSDLADLVEMMHLIIQLMENLQARGSLRVSKKSRKGRKKKVVSDNV TKSEQFEDHAAAPDGVGTSVCEQSAAYVSEKESPVKGTSDWKEDTSTPLLVDELGKSE TKMECPGDLPQVDNNTPGHADDDLCCSTDDSSGDEQPATVNEVDFKVSTLTSAFANCS IIQNLCWLLKFYRSNSINTNHYILGMLRKITDDLELAPMLYQLSLLTTFYDILEEQKS CPSEEHADIVGFITSLVRNMLKKMKNQPLLFIEILFWKTRRECHYINAEYLLHELGHW KKGSKTQDSAPRNGEIGSSEASEWVGRSIADALGEDEADVVISHERGHLNGENSMENK TGKINERKRRLVLNDDMETKLKELYEKFKDHPNCIRLIAESLDPDGGILPAQVSNKLK QLGLKVAPKKRTRGSDQQGDKSTLHDSNDLEGSSQRQPLNTRKRVRAFSKDQEAMIKD LFEQYKDHRRCSYMIANALDADNMFTAAQVSRKLKQLGLHVPRQKRSEDNMHLRDEEL NDLSADETCDSDNETLLSFRNRKTRKLPLNSKNEKLATITTRERIDKISEVVVANDVT ENDGSNQFSE" CDS complement(join(<27230715..27230739,27231500..27231604, 27232175..27232402,27232627..27232695,27232918..27233127, 27233400..27233504,27233903..27234273,27234368..27234895, 27235575..27235653,27236175..27236341,27236805..27237017, 27238277..27238407,27238541..27238733,27238822..27238959, 27239056..27239362,27239659..27239818,27239937..27240089, 27240199..27240301)) /locus_tag="TCM_015298" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Timeless family protein, putative isoform 3" /protein_id="EOY23389.1" /db_xref="Phytozome:GSVIVT01028757001" /db_xref="TAIR:AT5G52910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9A6" /translation="MDMEGLSVICASLGILEEDQTTKQIVYTKGEHCLDALKDLLRFL RRDNPETREVFKQVCRWNIVSKNLIPIIEHWQHDRNLVLNAVKVLVFLSMPIEPSSSD VPQQIEYLWDIKFSLTGSDAVAVIVSLLEGPLENLEYEVFTEDDWKLVQLVVTLFRNV LAIQDFSLLQKAGQFLSLRDRFLELLFRENVMELIIVITQHIGGSRGYLRQDNLLLLE TFHYIFMNQDPELLSKAHLKGSTEGGDAKACIDDLKSIMEEEAKKRRVSRLHHTGRHS QFSGTFTRLTMDGSTAVYKGNPDSASQNVLLKSHKGHGISTQKIVRGHGQLPSTRNNI LELLHDFVNQFLSGGYNVLMKSIREDIEKEHHAIQKGDIIVFFKVAEFVTSFQYHKFL TSKPTVENPTPEVSADKCADSTFFKGDICGPIAASMNESMFQLVISRWRNAFEGLKET NDYKFLSAASSLMKNMIRMLDLVLNLFPEDSKEPRTARMLLYKLFYDQTDQGMTQFLL NLIKMFNSRKQPKSDLADLVEMMHLIIQLMENLQARGSLRVSKKSRKGRKKKVVSDNV TKSEQFEDHAAAPDGVGTSVCEQSAAYVSEKESPVKGTSDWKEDTSTPLLVDELGKSE TKMECPGDLPQVDNNTPGHADDDLCCSTDDSSGDEQPATVNEVDFKVSTLTSAFANCS IIQNLCWLLKFYRSNSINTNHYILGMLRKITDDLELAPMLYQLSLLTTFYDILEEQKS CPSEEHADIVGFITSLVRNMLKKMKNQPLLFIEILFWKTRRECHYINAEYLLHELGHW KKGSKTQDSAPRNGEIGSSEASEWVGRSIADALGEDEADVVISHERGHLNGENSMENK TGKINERKRRLVLNDDMETKLKELYEKFKDHPNCIRLIAESLDPDGGILPAQVSNKLK QLGLKVAPKKRTRGSDQQGDKSTLHDSNDLEGSSQRQPLNTRKRVRAFSKDQEAMIKD LFEQYKDHRRCSYMIANALDADNMFTAAQVSRKLKQLGLHVPRQKRSEDNMHLRDEEL NDLSADETCDSDNETLLSFRNRNKDKDRLFSQEFPAQNVEGRISDDTDDKTLSSVLND GSNQFSE" mRNA complement(join(<27231061..27231086,27231500..27231604, 27232175..27232402,27232627..27232695,27232918..27233127, 27233400..27233504,27233903..27234273,27234368..27234895, 27235575..27235653,27236175..27236341,27236805..27237017, 27238277..27238407,27238541..27238733,27238822..27238959, 27239056..27239362,27239659..27239818,27239937..27240089, 27240199..27240506)) /locus_tag="TCM_015298" /product="Timeless family protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028757001" /inference="similar to AA sequence:Phytozome:GSVIVT01028757001" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc535t8; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc535t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7419t4" CDS complement(join(<27231062..27231086,27231500..27231604, 27232175..27232402,27232627..27232695,27232918..27233127, 27233400..27233504,27233903..27234273,27234368..27234895, 27235575..27235653,27236175..27236341,27236805..27237017, 27238277..27238407,27238541..27238733,27238822..27238959, 27239056..27239362,27239659..27239818,27239937..27240089, 27240199..27240301)) /locus_tag="TCM_015298" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Timeless family protein, putative isoform 5" /protein_id="EOY23391.1" /db_xref="Phytozome:GSVIVT01028757001" /db_xref="TAIR:AT5G52910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9A6" /translation="MDMEGLSVICASLGILEEDQTTKQIVYTKGEHCLDALKDLLRFL RRDNPETREVFKQVCRWNIVSKNLIPIIEHWQHDRNLVLNAVKVLVFLSMPIEPSSSD VPQQIEYLWDIKFSLTGSDAVAVIVSLLEGPLENLEYEVFTEDDWKLVQLVVTLFRNV LAIQDFSLLQKAGQFLSLRDRFLELLFRENVMELIIVITQHIGGSRGYLRQDNLLLLE TFHYIFMNQDPELLSKAHLKGSTEGGDAKACIDDLKSIMEEEAKKRRVSRLHHTGRHS QFSGTFTRLTMDGSTAVYKGNPDSASQNVLLKSHKGHGISTQKIVRGHGQLPSTRNNI LELLHDFVNQFLSGGYNVLMKSIREDIEKEHHAIQKGDIIVFFKVAEFVTSFQYHKFL TSKPTVENPTPEVSADKCADSTFFKGDICGPIAASMNESMFQLVISRWRNAFEGLKET NDYKFLSAASSLMKNMIRMLDLVLNLFPEDSKEPRTARMLLYKLFYDQTDQGMTQFLL NLIKMFNSRKQPKSDLADLVEMMHLIIQLMENLQARGSLRVSKKSRKGRKKKVVSDNV TKSEQFEDHAAAPDGVGTSVCEQSAAYVSEKESPVKGTSDWKEDTSTPLLVDELGKSE TKMECPGDLPQVDNNTPGHADDDLCCSTDDSSGDEQPATVNEVDFKVSTLTSAFANCS IIQNLCWLLKFYRSNSINTNHYILGMLRKITDDLELAPMLYQLSLLTTFYDILEEQKS CPSEEHADIVGFITSLVRNMLKKMKNQPLLFIEILFWKTRRECHYINAEYLLHELGHW KKGSKTQDSAPRNGEIGSSEASEWVGRSIADALGEDEADVVISHERGHLNGENSMENK TGKINERKRRLVLNDDMETKLKELYEKFKDHPNCIRLIAESLDPDGGILPAQVSNKLK QLGLKVAPKKRTRGSDQQGDKSTLHDSNDLEGSSQRQPLNTRKRVRAFSKDQEAMIKD LFEQYKDHRRCSYMIANALDADNMFTAAQVSRKLKQLGLHVPRQKRSEDNMHLRDEEL NDLSADETCDSDNETLLSFRNRNKDKDRLFSQEFPAQNVEGRISDDTDDKTLSSVLKK TRKLPLN" gene 27241814..27244530 /locus_tag="TCM_015299" /note="dbxref CacaoGD:Thecc1EG015299" mRNA 27241814..27244530 /locus_tag="TCM_015299" /product="Leucine-rich repeat (LRR) family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01037229001" /inference="similar to AA sequence:ricco:29757.m000718" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9282t1" CDS 27242169..27243611 /locus_tag="TCM_015299" /note="dbxref ricco:29757.m000718" /codon_start=1 /product="Leucine-rich repeat (LRR) family protein" /protein_id="EOY23392.1" /db_xref="TAIR:AT1G33590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GW31" /translation="MELSLSRYLPIPFLLFILTVPYVKITSAVCHGDDEKGLLGFKSG ITQDPSGMLSTWKPGTDCCTWAGINCLFNDRVTSISLFGQLDKPNSFLSGTISPSLLK VQNLDGIYLQNLRNISGKFPDLIFGLPKLKFVYIENNKLSGQIPMNIGRLTQLDALSL AGNQFTGTIPSSISELTQLTQLNLGNNLLTGRFPAGIRQLKNLTFLSLERNKLSGIIP DIFKSFTNLRSLTLSHNAFSGKIPDSVSSLAPRLLYLELGHNALSGQLPSFLGNFKAL DTLDLSSNLFTGVVPKSFANLTKIFNLDLSHNVLTDPFPEMNVKGIESLDLSYNKFHL KEIPKWVTSSPIIYSLKLAKCGIKMSLDSWKPAETYFYDYIDLSDNEISGSPVGLLNR TDYLVEFRASGNKLRFDLEKLRIVKTLKQLDISHNLVYGKVPSAITGLEKLNVSYNHL CGQLPKTKFPASSFVGNDCLCGSPLPPCKL" gene 27245288..27295128 /locus_tag="TCM_015300" /note="dbxref CacaoGD:Thecc1EG015300" mRNA join(27245288..27245948,27246735..27247022, 27247616..27247781,27248590..27248724,27248877..27248987, 27249096..27249184,27249541..27249603,27249733..27249908, 27250286..27250388,27250517..27250665,27251022..27251122, 27294292..27294928) /locus_tag="TCM_015300" /product="Plastidic pyruvate kinase beta subunit 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028756001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015766t1" /inference="similar to AA sequence:ricco:30169.m006558" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc655t8; inference alignment:Newbler:10:TSA:cgbaB_g04841t00001" mRNA join(27245503..27245948,27246735..27247022, 27247616..27247781,27248590..27248724,27248877..27248987, 27249096..27249184,27249541..27249603,27249733..27249908, 27250286..27250388,27251022..27251130,27294298..27295128) /locus_tag="TCM_015300" /product="Plastidic pyruvate kinase beta subunit 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028756001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015766t1" /inference="similar to AA sequence:ricco:30169.m006558" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b014784t1a2; inference alignment:Newbler:10:TSA:cgbaB_g04841t00001" mRNA join(27245532..27245948,27246735..27247022, 27247616..27247781,27248590..27248724,27248877..27248987, 27249096..27249184,27249541..27249603,27249733..27249908, 27250286..27250388,27250517..27250665,27251022..27251130, 27294298..27295057) /locus_tag="TCM_015300" /product="Plastidic pyruvate kinase beta subunit 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028756001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015766t1" /inference="similar to AA sequence:ricco:30169.m006558" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04841t00001" CDS join(27245712..27245948,27246735..27247022, 27247616..27247781,27248590..27248724,27248877..27248987, 27249096..27249184,27249541..27249603,27249733..27249908, 27250286..27250388,27250517..27250665,27251022..27251122, 27294292..27294443) /locus_tag="TCM_015300" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006558; paralog of Thecc1EG015766t1" /codon_start=1 /product="Plastidic pyruvate kinase beta subunit 1 isoform 2" /protein_id="EOY23394.1" /db_xref="TAIR:AT5G52920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9EYF5" /translation="MAQVVATRSIHGSFLSQGSGSVQERVEKLKPLSFASKVLARDEN KSKRIVLRRNSRITAKRAARAEPEVIPVSPEDVPKREEQYEQLRGIQQGGDASVGMWS KPIVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYN AQSKDNTIAIMLDTKGPEVRSGDLPQPITLTTGQEFTFTIRRGVGTADCVSVNYDDFV TDVEVGDMLLVDGGMMSLMVKSKTDDSVKCEVVDGGELKSRRHLNVRGKSATLPSITE KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLQSCEADIHVIVKIESADSIPNLH SIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPT PTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATISGGEMPPN LGQAFKNHMSEMFAYHATMMSNTLGISTVVFTRTGFMAILLSHHRPSGTIFAFTNEKR IQQRLALYQGVCPIYMESSDDAEETFKNALACAEARNGKGGRRGGTCSEWQTAHLAIP VHSQYSGPQSIVAEERWKAHLPI" CDS join(27245712..27245948,27246735..27247022, 27247616..27247781,27248590..27248724,27248877..27248987, 27249096..27249184,27249541..27249603,27249733..27249908, 27250286..27250388,27250517..27250665,27251022..27251130, 27294298..27294405) /locus_tag="TCM_015300" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006558; paralog of Thecc1EG015766t1" /codon_start=1 /product="Plastidic pyruvate kinase beta subunit 1 isoform 1" /protein_id="EOY23393.1" /db_xref="TAIR:AT5G52920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9EYF5" /translation="MAQVVATRSIHGSFLSQGSGSVQERVEKLKPLSFASKVLARDEN KSKRIVLRRNSRITAKRAARAEPEVIPVSPEDVPKREEQYEQLRGIQQGGDASVGMWS KPIVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYN AQSKDNTIAIMLDTKGPEVRSGDLPQPITLTTGQEFTFTIRRGVGTADCVSVNYDDFV TDVEVGDMLLVDGGMMSLMVKSKTDDSVKCEVVDGGELKSRRHLNVRGKSATLPSITE KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLQSCEADIHVIVKIESADSIPNLH SIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPT PTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATISGGEMPPN LGQAFKNHMSEMFAYHATMMSNTLGISTVVFTRTGFMAILLSHHRPSGTIFAFTNEKR IQQRLALYQGVCPIYMESSDDAEETFKNALALLQKQGMVKEGEEVALVQSGRQPIWRF QSTHNIQVRKA" CDS join(27245712..27245948,27246735..27247022, 27247616..27247781,27248590..27248724,27248877..27248987, 27249096..27249184,27249541..27249603,27249733..27249908, 27250286..27250388,27251022..27251090) /locus_tag="TCM_015300" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006558; paralog of Thecc1EG015766t1" /codon_start=1 /product="Plastidic pyruvate kinase beta subunit 1 isoform 3" /protein_id="EOY23395.1" /db_xref="TAIR:AT5G52920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9EYF5" /translation="MAQVVATRSIHGSFLSQGSGSVQERVEKLKPLSFASKVLARDEN KSKRIVLRRNSRITAKRAARAEPEVIPVSPEDVPKREEQYEQLRGIQQGGDASVGMWS KPIVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYN AQSKDNTIAIMLDTKGPEVRSGDLPQPITLTTGQEFTFTIRRGVGTADCVSVNYDDFV TDVEVGDMLLVDGGMMSLMVKSKTDDSVKCEVVDGGELKSRRHLNVRGKSATLPSITE KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLQSCEADIHVIVKIESADSIPNLH SIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPT PTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATISGGEMPPN LGQAFKEKDTTEIGFVPRSMSHIHGVFR" gene complement(27251393..27261927) /locus_tag="TCM_015301" /note="dbxref CacaoGD:Thecc1EG015301" mRNA complement(join(27251393..27251673,27257621..27258831, 27261774..27261927)) /locus_tag="TCM_015301" /product="Acidic endochitinase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015310t1" /inference="similar to AA sequence:ricco:30169.m006557" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage" mobile_element 27251439..27252238 /note="source:INTACT52F_F339_scaffold_1-int 14 802" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(27251577..27251673,27257621..27258438)) /locus_tag="TCM_015301" /note="dbxref ricco:30169.m006557; paralog of Thecc1EG015310t1" /codon_start=1 /product="Acidic endochitinase" /protein_id="EOY23396.1" /db_xref="TAIR:AT5G24090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51614" /translation="MATKTQAITIFLSLLVLALIEVSHAGGIAIYWGQSGSETTLNTT CNSGLYKYVNIAFLNKFGSGRTPGLNLAGHCNPANGGCRVASSAIRNCQSKGIKVMLS IGGGIGQYSLASKADAQRVAAYLYNNFLGGRSPSRPLGSAVLDGIDFDIELGSTNYWA DLARYLAAYSKPGRKVYLSAAPQCPIPDRFLGAALSTGLFDYVWVQFYNNPPCQYSPG NTSKLLASWKRWAAIGAIKKLFLGLPAAKAAAGSGYIPPGVLTSKILPEIKKSPKVLK SRVVQFFGQPGEGGSGTPGVGGQNPHHA" mobile_element complement(27260724..27261999) /note="source:INTACT618_F274_scaffold_3-int 358 1646" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27261932..27262080 /note="source:INTACT618_F274_scaffold_3-int 4940 5078" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(27261974..27270447) /locus_tag="TCM_015302" /note="dbxref CacaoGD:Thecc1EG015302" mRNA complement(join(27261974..27263276,27266232..27266416, 27268641..27268689,27269030..27269759,27269901..27270447)) /locus_tag="TCM_015302" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015303t2" /inference="similar to AA sequence:Phytozome:POPTR_0005s00730.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS complement(join(27262811..27263276,27266232..27266416, 27268641..27268689,27269030..27269759,27269901..27270234)) /locus_tag="TCM_015302" /note="paralog of Thecc1EG015303t2" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /protein_id="EOY23397.1" /db_xref="Phytozome:POPTR_0005s00730.1" /db_xref="TAIR:AT3G49142.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10PA0" /translation="MIAVFVNNSLSTEAVDLYSQMEACGIEPDSFTIASVLPACGDLS AIFLGRRIHEYVERKKLLPNLALENALIDMYAKCGCLQEAKAVFDQMKFRDIVSWTSL ISAYGMSGQGQYKIIPRVEHFACMVDLLGRSGQVEEAYNFIRQMPIEPTERVWGTLLG ACWMHSNMYIGLLAADHLFQFAPEPSGYYVLLSNIYAKAGRWEDVTTVRSIMKSKGIK KMAGGSNTEINNQVYTFLAGDRSHPPSKSIYEELDVLVGEMKEAGYVPEIHSALHDVE EEDKECHLAVHSEKLAIVFAILNTEPGTPIRITKNLRICGDCHIAAKLISQIAEREII VRDTYRFHHFQNGVCSCGDSWHGRFSILSEAFMIEMGADMPRGLPAAPAAAGSGYIPP NVLTSQILPVIKSSAKYGGVMLWSKFFDDRNGYSASILNSVSVKEIRTMGAPPPAFTI RHPDYAISDNVTPFRDYDYFGALWDPVPFFSSKQTSEEWTTNELITFEQLEEYGAYYV GERSDMYAVSHFVYYVDGEYMPVFRKITGYDMFTYCRRRIMRRENRRGYATPRAFPKP VCLNPPANSQEQPKRQDTVIK" gene complement(27268277..27321980) /locus_tag="TCM_015303" /note="dbxref CacaoGD:Thecc1EG015303" mRNA complement(join(27268277..27268385,27318676..27319167, 27319456..27321980)) /locus_tag="TCM_015303" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015302t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s00730.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1501t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1501t3" mobile_element complement(27271560..27272357) /note="source:CACAO_Again_on_S_E193_scaffold_6 4 819" /mobile_element_type="transposon:TIR/hAT" gene 27272019..27274307 /locus_tag="TCM_015304" /note="dbxref CacaoGD:Thecc1EG015304" mRNA join(27272019..27272088,27272396..27272530, 27272683..27272793,27272902..27272990,27273347..27273409, 27273539..27273714,27274092..27274307) /locus_tag="TCM_015304" /product="Plastidic pyruvate kinase beta subunit 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015300t1" /inference="similar to AA sequence:ricco:30169.m006558" /note="quality class is strong, express is weak, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7501t1" CDS join(27272401..27272530,27272683..27272793, 27272902..27272990,27273347..27273409,27273539..27273714, 27274092..27274203) /locus_tag="TCM_015304" /note="dbxref ricco:30169.m006558; paralog of Thecc1EG015300t1" /codon_start=1 /product="Plastidic pyruvate kinase beta subunit 1" /protein_id="EOY23400.1" /db_xref="TAIR:AT5G52920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9EYF5" /translation="MMSLMVKSKTDDSVQCEVVDGGELKSRRHLNVRGKSATLPSITE KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLQSCDADIQVIVKIESADSIPNLH SIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPT PTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMQTVALRTEATISVGEMPPY LGQAFKVT" assembly_gap 27274625..27284624 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(27289594..27294067) /note="source:INTACT60_F127_scaffold_9-int 3078 7558" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27289982..27519160 /locus_tag="TCM_015306" /note="dbxref CacaoGD:Thecc1EG015306" mRNA join(27289982..27290632,27519044..27519160) /locus_tag="TCM_015306" /product="RNA-directed DNA polymerase" /inference="alignment:exonerate- protein:2:frave:gene34538.18" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033215t1" /inference="similar to AA sequence:Phytozome:Glyma20g10020.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc9Loc3615t2_G4" CDS 27290051..27290452 /locus_tag="TCM_015306" /note="paralog of Thecc1EG033215t1" /codon_start=1 /product="RNA-directed DNA polymerase" /protein_id="EOY23401.1" /db_xref="Phytozome:Glyma20g10020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q2J0" /translation="MLEQEEKEILPHQELTEMINLENGKEKKEVKIGTSLSSDERQKL EELLREYVDVFAWSYQDMPGLNTDMVVHKLPLEPDCKPIKQKLRRMKPEMLLKIKEEV KRQFDAGFLEVAKYPEWVANIVPVPKKDGKV" gene complement(27295158..27296498) /locus_tag="TCM_015309" /note="dbxref CacaoGD:Thecc1EG015309" mRNA complement(27295158..27296498) /locus_tag="TCM_015309" /product="Acidic endochitinase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015311t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05980.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(27295568..27296461) /locus_tag="TCM_015309" /note="paralog of Thecc1EG015311t1" /codon_start=1 /product="Acidic endochitinase" /protein_id="EOY23402.1" /db_xref="Phytozome:POPTR_0015s05980.1" /db_xref="TAIR:AT5G24090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51614" /translation="MATKTPAIPVLVSLLVLALIEVSQAGGIAVYWGQNDFETTLNQT CETGLYKYVNIAFLNKFGSGRIPELNLAGHCNPKNGGCKVASIAIRNCQKQGIKVMLS IGGRRGQYSLASKADAKKVADYLYNNFLGGTSPSRPLGNAVLDGIDFDIELGSTKYWD DLARYLAAYSKPGRKVYLSAAPQCPFPDRYLGPALNTGLFDYVWVQFYNNAACQYAPG NTRNLLNSWHRWTTSIKAGKIFLGLPATKAAGTGYIPPWELKSKILPLIKKSPKYGGV MLWNRYFDKIGGYSTVIKNSV" gene complement(27296548..27300338) /locus_tag="TCM_015310" /note="dbxref CacaoGD:Thecc1EG015310" mRNA complement(join(27296548..27296700,27299091..27300338)) /locus_tag="TCM_015310" /product="Acidic endochitinase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05980.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015301t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05980.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage" mobile_element 27297641..27297747 /note="source:scaffold_1_CACTA_0032 2338 2445" /mobile_element_type="transposon:TIR/CACTA" CDS complement(27299413..27300309) /locus_tag="TCM_015310" /note="paralog of Thecc1EG015301t1" /codon_start=1 /product="Acidic endochitinase" /protein_id="EOY23403.1" /db_xref="Phytozome:POPTR_0015s05980.1" /db_xref="TAIR:AT5G24090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51614" /translation="MATKTQAIPIFLSLLVLALIEVSHAGGIGIYWGQSGSETTLNTT CNSGLYKYVSIAFLNKFGSGRTPGLNLAGHCNPANGGCRVASSAIRNCQSKGIKVMLS IGGGIGQYSLASKADAQRVAAYLYKNFLGGSSPSRPLGSAVLDGIDFDIELGSTNYWA DLARYLAAYSKPGRKVYLSAAPQCPIPDRFLGAALSTGLFDYVWVQFYNNAPCQYSPG NTSKLLASWKRWAAIGAIKKLFLGLPAAKAGAGSGYIPPGVLTSKILPEIKKSPKYGG VMLWNRYLDKVTGYSAAIKSKV" mobile_element 27300568..27301075 /note="source:INTACT52F_F339_scaffold_1-int 9693 10174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27301076..27301434 /note="source:CACAO_on_E459_scaffold_2 2190 2550" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(27302986..27307234) /locus_tag="TCM_015311" /note="dbxref CacaoGD:Thecc1EG015311" mRNA complement(join(27302986..27304316,27307122..27307234)) /locus_tag="TCM_015311" /product="Acidic endochitinase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05980.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015309t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05980.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS complement(27303175..27304167) /locus_tag="TCM_015311" /note="paralog of Thecc1EG015309t1" /codon_start=1 /product="Acidic endochitinase" /protein_id="EOY23404.1" /db_xref="Phytozome:POPTR_0015s05980.1" /db_xref="TAIR:AT5G24090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51614" /translation="MKSSQLVPPGLYIRDFLLGIVESHTADNTTTATMATKTPAIPVL VSLLVLALIEVSQAGGIAVYWGQNGFETTLNQTCETGLYKYVNIAFLNKFGSGRIPEL NLAGHCNPKYGGCKVASIAIRNCQKQGIKVMLSIGGRRGQYSLASKADAKKVADYLYN NFLGGTSPSRPLGNAVLDGIDFDIELGSTKYWDDLARYLAAYSKPGRKVYLSAAPQCP FPDRYLGPALNTGLFDYVWVQFYNNAACQYAPGNTRNLLNSWYRWTTSTKAGKIFLGL PATKAAGTGYIPPWELKSKILPLIKKSPKYGGVMLWNRYFDKIGGYSTAIKNSV" mobile_element complement(27305533..27305710) /note="source:scaffold_7_CACTA_0795 2849 3032" /mobile_element_type="transposon:TIR/CACTA" gene complement(27307314..27308737) /locus_tag="TCM_015312" /note="dbxref CacaoGD:Thecc1EG015312" mRNA complement(27307314..>27308216) /locus_tag="TCM_015312" /product="Acidic endochitinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028753001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015310t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05980.1" /note="quality class is strong-expertchoice-splitgene is 2, express is weak, homology is paralog strong, intron is none, protein is partial5; similar to RNA sequence, EST 0.30 coverage; transcript variant 1; alternatively spliced" CDS complement(27307779..>27308216) /locus_tag="TCM_015312" /note="paralog of Thecc1EG015310t1; encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Acidic endochitinase isoform 1" /protein_id="EOY23405.1" /db_xref="Phytozome:POPTR_0015s05980.1" /db_xref="TAIR:AT5G24090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51614" /translation="GSTNYWADLARYLAAYSKPGRKVYLSAAPQCPIPDRFLGAALST GLFDYVWVQFYNNAPCQYSPGNTSKLLASWKRWAAIGAIKKLFLGLPAAKAGAGSGYI PPGVLTSKILPEIKKSPKYGGVMLWNRYLDKVTGYSAAIKSKV" mRNA complement(<27308373..27308737) /locus_tag="TCM_015312" /product="Acidic endochitinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028753001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015310t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05980.1" /note="quality class is strong-expertchoice-splitgene is 2, express is weak, homology is paralog strong, intron is none, protein is partial3; similar to RNA sequence, EST 0.30 coverage; transcript variant 1; alternatively spliced" CDS complement(<27308373..27308675) /locus_tag="TCM_015312" /note="paralog of Thecc1EG015310t1; encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Acidic endochitinase isoform 1" /protein_id="EOY23406.1" /db_xref="Phytozome:POPTR_0015s05980.1" /db_xref="TAIR:AT5G24090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51614" /translation="MATKTQAIPIFLSLLVLALIEVSHAGGIGIYWGQSGSETTLNTT CNSGLYKYVSIAFLNKFGSGRTPGLNLAGHCNPANGGCRVASSAIRNCQSKGIKVML" mobile_element 27310199..27310290 /note="source:scaffold_9_CACTA_0936 328 419" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27311062..27312322) /note="source:INTACT618_F274_scaffold_3-int 390 1649" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(27311623..27314140) /locus_tag="TCM_015313" /note="dbxref CacaoGD:Thecc1EG015313" mRNA complement(join(27311623..27312026,27313166..27314140)) /locus_tag="TCM_015313" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015302t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(join(27311808..27312026,27313166..27313606)) /locus_tag="TCM_015313" /note="paralog of Thecc1EG015302t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23407.1" /translation="MGAPPPAFTIRHPDYAISDNVTPFRDYDYFGALWDPVPFFSSKQ TSEEWTTNELITFEQLEEYGAYYVGERSDMYAVSHFVYYVDGEYMPVFRKITGYDMFT YCRRRIMRRENRRGYATPRAFPKPVCLNPPANSQEQPKRQDTVINAFDFWDMVETGEV PIQRHANSTLAQIKQHSEEVAKRYKALICLQSAVLETIFEKIMNYKDPKQVWDSLKEE Y" mobile_element 27312295..27312447 /note="source:INTACT618_F274_scaffold_3-int 4940 5079" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(27316543..27317507) /locus_tag="TCM_015314" /note="dbxref CacaoGD:Thecc1EG015314" mRNA complement(27316543..27317507) /locus_tag="TCM_015314" /product="Acidic endochitinase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05980.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015301t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028752001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11714t00001" CDS complement(27316699..27317484) /locus_tag="TCM_015314" /note="paralog of Thecc1EG015301t1" /codon_start=1 /product="Acidic endochitinase" /protein_id="EOY23408.1" /db_xref="Phytozome:GSVIVT01028752001" /db_xref="TAIR:AT5G24090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51614" /translation="MATRSEASPKLFFLLSVLAVIKTSHAAGGIAIYWGQNGNEGTLT ATCATGRYAYVNIAFLNKFGNGRTPEINLAGHCNPASNGCTAVSSGIRSCQARGIKVM LSIGGGVGSYSLASQADAKNVADYLWNNFLGGTSSSRPLGDAVLDGIDFDIELGSTQY WDDLSRYLSAYSNQGRKVYLTAAPQCPFPDRLLGTALNTGLFDYVWIQFYNNRPCQWH RHLLGPERQRGNPDCNLCHRQICHEGYRQHRQRLEVGIFRRMC" mRNA complement(join(27319144..27319263,27319456..27321980)) /locus_tag="TCM_015303" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015302t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s00730.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1501t1; alternateUTRof:Thecc1EG015303t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1501t3" CDS complement(27319896..27321929) /locus_tag="TCM_015303" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015302t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /protein_id="EOY23398.1" /db_xref="Phytozome:POPTR_0005s00730.1" /db_xref="TAIR:AT3G49142.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10PA0" /translation="MRTITPPCRHFSTAKQLKDLAPSSPPKPEFPPLILNEHLCGNLL DQYPDVKTLKKLHSRIFKDQYLRFNPSLRIKLMRAFAACGEPTVTRHIFDEITEKNIV FFNVTIRSYVNNRCYHDALLIFKEMSSHGVSPDHYTYPCVLKACSGSDNLRVGLQIHS AVIKVGLDLNLFTGNGLVSMYSKCRCLVEARRVLDEMPIRDVVSWNSMVSGYAQNGCF DNALDVCREMELLRIKADAGTMSSLLPAVTNTCSDNILYVKEMFWKLARKSLVSWNVM IAVFVNNLLSTEAVDLYSQMEACGIEPDSFTIASVLPACGDLSAIFLGRRIHEYVERK KLLPNLALENALIDMYAKCGCLQEAKAVFDQMKFRDIVSWTSLISAYGMSGQGYSAVA LFSEMQDSGLTPDSIAFVSVLSACSHAGLLEQGWHFFNLMTEQYKIIPSVEHFACMVD LLGRSGQVEEAYNFIRQMPIEPTERVWGTLLGACWMHSNMYIGLLAADHLFQLAPEPS GYYVLLSNIYAKAGRWEDVTTVRSIMKSKGIKKMAGASNTEINNQVYTFLAGDRSHPQ SKAIYEELDVLVGKMKEAGYVPETHSALHDVEEEDKECHLAVHSEKLAIVFAILNTEP GTPIRITKNLRICGDCHIAAKLISQIAEREIIVRDTYRFHHFQNGVCSCGDSW" CDS complement(27319896..27321929) /locus_tag="TCM_015303" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015302t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /protein_id="EOY23399.1" /db_xref="Phytozome:POPTR_0005s00730.1" /db_xref="TAIR:AT3G49142.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10PA0" /translation="MRTITPPCRHFSTAKQLKDLAPSSPPKPEFPPLILNEHLCGNLL DQYPDVKTLKKLHSRIFKDQYLRFNPSLRIKLMRAFAACGEPTVTRHIFDEITEKNIV FFNVTIRSYVNNRCYHDALLIFKEMSSHGVSPDHYTYPCVLKACSGSDNLRVGLQIHS AVIKVGLDLNLFTGNGLVSMYSKCRCLVEARRVLDEMPIRDVVSWNSMVSGYAQNGCF DNALDVCREMELLRIKADAGTMSSLLPAVTNTCSDNILYVKEMFWKLARKSLVSWNVM IAVFVNNLLSTEAVDLYSQMEACGIEPDSFTIASVLPACGDLSAIFLGRRIHEYVERK KLLPNLALENALIDMYAKCGCLQEAKAVFDQMKFRDIVSWTSLISAYGMSGQGYSAVA LFSEMQDSGLTPDSIAFVSVLSACSHAGLLEQGWHFFNLMTEQYKIIPSVEHFACMVD LLGRSGQVEEAYNFIRQMPIEPTERVWGTLLGACWMHSNMYIGLLAADHLFQLAPEPS GYYVLLSNIYAKAGRWEDVTTVRSIMKSKGIKKMAGASNTEINNQVYTFLAGDRSHPQ SKAIYEELDVLVGKMKEAGYVPETHSALHDVEEEDKECHLAVHSEKLAIVFAILNTEP GTPIRITKNLRICGDCHIAAKLISQIAEREIIVRDTYRFHHFQNGVCSCGDSW" gene complement(27322102..27328038) /locus_tag="TCM_015315" /note="dbxref CacaoGD:Thecc1EG015315" mRNA complement(join(27322102..27322796,27323506..27323697, 27323862..27326287)) /locus_tag="TCM_015315" /product="LIM domain-containing protein A, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01170.1" /inference="similar to AA sequence:ricco:30169.m006553" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc984t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7457t2" mRNA complement(join(27322112..27323127,27323506..27323697, 27323862..27326484,27327489..27328038)) /locus_tag="TCM_015315" /product="LIM domain-containing protein A, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01170.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s01170.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7457t2" mRNA complement(join(27322221..27323127,27323506..27323697, 27323862..27325127,27325213..27326159)) /locus_tag="TCM_015315" /product="LIM domain-containing protein A, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01170.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s01170.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7457t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7457t2" CDS complement(join(27322554..27323127,27323506..27323697, 27323862..27326140)) /locus_tag="TCM_015315" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="LIM domain-containing protein A, putative isoform 1" /protein_id="EOY23409.1" /db_xref="Phytozome:POPTR_0012s01170.1" /db_xref="TAIR:AT5G52950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I520" /translation="MAAKVVDPLTDYSKTQRVVLLIDLNPLLHLQDANPYLKTLLSSS KTLLSFPPLSSSLFSFKPFFSSLSPLLSSSKLPSTSTSLSLSFNHPDSTLHSLTEFLT SLPTTINKSSFPLNPSKALNLAASLRQLVHDYAWDPLIPDPVAGTLSNSDSSDLIRSN LVILFSPVYRHLNGLCEFFDVEMEDECLRNLDAFVDKFSGVFDSVNDAFVSRDIHCCW VDVKFQSWENEDFENLGYGFLESGIRSLGWGFCSADSIVLGSALVPFGLIYPIIGVSS NCFRGFDFNDDSGRRMNAQLSLEISDASGKPLECKCCELEFVHFKMCSRNKNGDVLFT PEFSNPQMRGDDQKLRSMFEQYSDGVMTLCVRTVRKYDGCEKFEGHFLNPIIVREYWG NSRKDPKDNLGEFFADRALQILARDMGESLVRKPVPIWQIFLSFLYREGYWALVSLSD GNCDLHTGILKPFTVSSAILCIIDDEFCTNNKLQEYRGEDVAAYVSKRDDEISKSNVD SKHSSGILDSQSHPSPSIKCASKRKKNKKNLHLLHEMTWSTFSHAAAEHLEINLEESY FSRNCNNSKKLKFLKCWMKQIKKCSSCSLKIPESANPDQDATEEMNHRPIELPQDSEQ PASYSASAGEGSSRILDEAGNEFCSETLENFFNSLPNKIKQGLESGEVELGAFAERLV SSSIYWLYQKHEMEDNSESQTSVVKANDACASKAAVELTELLLREPKDIAAMHKRRDP FSQASDSRSTGSAFLNIVREYELQILFRMEILQSEVGAIIEEPMRQKFVKQICLLLES IQCHLEGGFFGDWRLDKYVEKIIKSRYYQSLRDVVDKIYTKMDLLLFDDEDELPNHLL NSEGSNQSWKEKPEKDVNYRKNEPVSIGDESPQVHKNDNRSPQVIRTKEHAQKLIEAQ ERRERARRFSSFTSWMPHLQRVWVPKQPKAMKLKSEPLRKLSKRKNCSRANYDMVCET PITEKKRSSPRRIGIDEEEGHRDCGAHSHGSVSKALFQDDIQ" CDS complement(join(27322554..27323127,27323506..27323697, 27323862..27325117)) /locus_tag="TCM_015315" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="LIM domain-containing protein A, putative isoform 2" /protein_id="EOY23410.1" /db_xref="Phytozome:POPTR_0012s01170.1" /db_xref="TAIR:AT5G52950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I520" /translation="MRGDDQKLRSMFEQYSDGVMTLCVRTVRKYDGCEKFEGHFLNPI IVREYWGNSRKDPKDNLGEFFADRALQILARDMGESLVRKPVPIWQIFLSFLYREGYW ALVSLSDGNCDLHTGILKPFTVSSAILCIIDDEFCTNNKLQEYRGEDVAAYVSKRDDE ISKSNVDSKHSSGILDSQSHPSPSIKCASKRKKNKKNLHLLHEMTWSTFSHAAAEHLE INLEESYFSRNCNNSKKLKFLKCWMKQIKKCSSCSLKIPESANPDQDATEEMNHRPIE LPQDSEQPASYSASAGEGSSRILDEAGNEFCSETLENFFNSLPNKIKQGLESGEVELG AFAERLVSSSIYWLYQKHEMEDNSESQTSVVKANDACASKAAVELTELLLREPKDIAA MHKRRDPFSQASDSRSTGSAFLNIVREYELQILFRMEILQSEVGAIIEEPMRQKFVKQ ICLLLESIQCHLEGGFFGDWRLDKYVEKIIKSRYYQSLRDVVDKIYTKMDLLLFDDED ELPNHLLNSEGSNQSWKEKPEKDVNYRKNEPVSIGDESPQVHKNDNRSPQVIRTKEHA QKLIEAQERRERARRFSSFTSWMPHLQRVWVPKQPKAMKLKSEPLRKLSKRKNCSRAN YDMVCETPITEKKRSSPRRIGIDEEEGHRDCGAHSHGSVSKALFQDDIQ" CDS complement(join(27322763..27322796,27323506..27323697, 27323862..27326140)) /locus_tag="TCM_015315" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006553" /codon_start=1 /product="LIM domain-containing protein A, putative isoform 3" /protein_id="EOY23411.1" /db_xref="TAIR:AT5G52950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I520" /translation="MAAKVVDPLTDYSKTQRVVLLIDLNPLLHLQDANPYLKTLLSSS KTLLSFPPLSSSLFSFKPFFSSLSPLLSSSKLPSTSTSLSLSFNHPDSTLHSLTEFLT SLPTTINKSSFPLNPSKALNLAASLRQLVHDYAWDPLIPDPVAGTLSNSDSSDLIRSN LVILFSPVYRHLNGLCEFFDVEMEDECLRNLDAFVDKFSGVFDSVNDAFVSRDIHCCW VDVKFQSWENEDFENLGYGFLESGIRSLGWGFCSADSIVLGSALVPFGLIYPIIGVSS NCFRGFDFNDDSGRRMNAQLSLEISDASGKPLECKCCELEFVHFKMCSRNKNGDVLFT PEFSNPQMRGDDQKLRSMFEQYSDGVMTLCVRTVRKYDGCEKFEGHFLNPIIVREYWG NSRKDPKDNLGEFFADRALQILARDMGESLVRKPVPIWQIFLSFLYREGYWALVSLSD GNCDLHTGILKPFTVSSAILCIIDDEFCTNNKLQEYRGEDVAAYVSKRDDEISKSNVD SKHSSGILDSQSHPSPSIKCASKRKKNKKNLHLLHEMTWSTFSHAAAEHLEINLEESY FSRNCNNSKKLKFLKCWMKQIKKCSSCSLKIPESANPDQDATEEMNHRPIELPQDSEQ PASYSASAGEGSSRILDEAGNEFCSETLENFFNSLPNKIKQGLESGEVELGAFAERLV SSSIYWLYQKHEMEDNSESQTSVVKANDACASKAAVELTELLLREPKDIAAMHKRRDP FSQASDSRSTGSAFLNIVREYELQILFRMEILQSEVGAIIEEPMRQKFVKQICLLLES IQCHLEGGFFGDWRLDKYVEKIIKSREFGFQSSRRQ" mRNA complement(join(<27323661..27323684,27323898..27326287)) /locus_tag="TCM_015315" /product="LIM domain-containing protein A, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01170.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s01170.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1570t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7457t2" CDS complement(join(<27323663..27323684,27323898..27326140)) /locus_tag="TCM_015315" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="LIM domain-containing protein A, putative isoform 4" /protein_id="EOY23412.1" /db_xref="Phytozome:POPTR_0012s01170.1" /db_xref="TAIR:AT5G52950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I520" /translation="MAAKVVDPLTDYSKTQRVVLLIDLNPLLHLQDANPYLKTLLSSS KTLLSFPPLSSSLFSFKPFFSSLSPLLSSSKLPSTSTSLSLSFNHPDSTLHSLTEFLT SLPTTINKSSFPLNPSKALNLAASLRQLVHDYAWDPLIPDPVAGTLSNSDSSDLIRSN LVILFSPVYRHLNGLCEFFDVEMEDECLRNLDAFVDKFSGVFDSVNDAFVSRDIHCCW VDVKFQSWENEDFENLGYGFLESGIRSLGWGFCSADSIVLGSALVPFGLIYPIIGVSS NCFRGFDFNDDSGRRMNAQLSLEISDASGKPLECKCCELEFVHFKMCSRNKNGDVLFT PEFSNPQMRGDDQKLRSMFEQYSDGVMTLCVRTVRKYDGCEKFEGHFLNPIIVREYWG NSRKDPKDNLGEFFADRALQILARDMGESLVRKPVPIWQIFLSFLYREGYWALVSLSD GNCDLHTGILKPFTVSSAILCIIDDEFCTNNKLQEYRGEDVAAYVSKRDDEISKSNVD SKHSSGILDSQSHPSPSIKCASKRKKNKKNLHLLHEMTWSTFSHAAAEHLEINLEESY FSRNCNNSKKLKFLKCWMKQIKKCSSCSLKIPESANPDQDATEEMNHRPIELPQDSEQ PASYSASAGEGSSRILDEAGNEFCSETLENFFNSLPNKIKQGLESGEVELGAFAERLV SSSIYWLYQKHEMEDNSESQTSVVKANDACASKAAVELTELLLREPKDIAAMHKRRDP FSQASDSRFCFAWRF" mobile_element complement(27326844..27326945) /note="source:scaffold_3_CACTA_0377 4199 4296" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27327500..27328283) /note="source:CACAO_Again_on_S_E215_scaffold_6 1 791" /mobile_element_type="transposon:TIR/hAT" gene 27328472..27330586 /locus_tag="TCM_015316" /note="dbxref CacaoGD:Thecc1EG015316" mRNA join(27328472..27329304,27329435..27329570, 27329667..27330586) /locus_tag="TCM_015316" /product="Pectin lyase-like superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene29291" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015317t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s04460.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS join(27328529..27329304,27329435..27329570, 27329667..27329891) /locus_tag="TCM_015316" /note="paralog of Thecc1EG015317t1" /codon_start=1 /product="Pectin lyase-like superfamily protein" /protein_id="EOY23413.1" /db_xref="Phytozome:POPTR_0001s04460.1" /db_xref="TAIR:AT5G09280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FY87" /translation="MATSWCFTLAIFVVILLASPNASLATMNVIDKCWRGNPRWRSQR QQLATCSVGFSGKMTNNIGKGVILYKVTDPSDDPLNPKPGTLSHGATMIKGKVWITFK RNMHITLQRPLLISSFTAIDGRGVNVHVTGAGCLLVYQATDVIIHGLHIHHCKSQPPS SVMGPDSKVITVGQMDGDAIRLVTAKKVWIDHNTLYDCQDDLLDVTRGSTDVTVSNNW FRNQDKVMLLGHDDGHLRDRNMKATVIFNHFGPNCYQRMPRVGHGYAHVANNLYQGWE QCAAGGSMRPSIKSEANYFIAPKLGNKEVTWRQGNRQDKASWKFYSVGDIFENGASFS SQTGLGGAKRYYNQEQSFKVADARLVSELTRSSGVLKCSRTLRC" gene 27332324..27334448 /locus_tag="TCM_015317" /note="dbxref CacaoGD:Thecc1EG015317" mRNA join(27332324..27333155,27333276..27333411, 27333507..27334448) /locus_tag="TCM_015317" /product="Pectin lyase-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s06550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015316t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s04460.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3634t1" CDS join(27332380..27333155,27333276..27333411, 27333507..27333731) /locus_tag="TCM_015317" /note="paralog of Thecc1EG015316t1" /codon_start=1 /product="Pectin lyase-like superfamily protein" /protein_id="EOY23414.1" /db_xref="Phytozome:POPTR_0001s04460.1" /db_xref="TAIR:AT5G09280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FY87" /translation="MATSWCFTLAIFVVILLASPNASLATMNVIDKCWRGNPRWRNQR QQLATCSVGFSGKMTNNIGKGVIRYKVTDPSDDPLNPKPGTLRHGATMIKGKVWITFK RNMNITLQRPLLISSFTAIDGRGVNVHVTGAGCLLVYQATDVIIHGLHIHHCKSQPPS SVMGPASKVIPLGQMDGDAIRLVTAKKVWIDHNTLYDCQDGLLDVTRGSNDVTISNNW FRNQDKVMLLGHDDGYLRDRNMKVTVIFNHFGPNCNQRMPRVRHGYAHVANNFYQGWE QYAIGGSMRPSIKSEANYFIAPKLGNKEVTWRQGNRQDKASWKFYSVGDIFENGASFS SQTGVGGAKPFYNQEQNFKVADARSVSELTRSSGVLKCSRTLRC" gene 27334949..27337047 /locus_tag="TCM_015318" /note="dbxref CacaoGD:Thecc1EG015318" mRNA join(27334949..27335429,27336880..27337047) /locus_tag="TCM_015318" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene13134" /inference="similar to AA sequence:Phytozome:POPTR_0012s01190.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10321t00001" CDS join(27335038..27335429,27336880..27336985) /locus_tag="TCM_015318" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23415.1" /db_xref="Phytozome:POPTR_0012s01190.1" /db_xref="TAIR:AT5G52960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVV6" /translation="MSAYSVSKLIITDYLSSATQASANPPKFPRFSLLQKSLSFPRCV SHSQRKIVTFVSSKSSEAEELPTAEDEWLNRLPDKNKPLYSHSLPCIEAWLRSLGFCQ SREDRAVWLIEKPDWHAQLSLDVTDLYIRYLKSGPGNLERDVERRFSYALSREDIENA ILGGP" gene complement(27337369..27368107) /locus_tag="TCM_015319" /note="dbxref CacaoGD:Thecc1EG015319" mRNA complement(join(27337369..27338282,27338658..27338897, 27338981..27339044,27339136..27339441,27339524..27339738, 27339897..27340191,27340333..27340497,27340580..27341167, 27341282..27341368,27341446..27341766,27341959..27344043, 27344402..27344467,27344687..27345170,27345352..27345918, 27346332..27346627)) /locus_tag="TCM_015319" /product="Multidrug resistance-associated protein 14 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006551" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015324t1" /inference="similar to AA sequence:ricco:30169.m006551" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc956t19" gene complement(27337415..27368111) /locus_tag="TCM_015324" /note="dbxref CacaoGD:Thecc1EG015324" mRNA complement(join(27337415..27337990,27360829..27361120, 27361508..27361741,27361826..27361893,27361992..27362297, 27362380..27362594,27362753..27363047,27363191..27363355, 27363438..27364025,27364140..27364226,27364294..27364614, 27364807..27366872)) /locus_tag="TCM_015324" /product="Multidrug resistance-associated protein 14 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015319t1" /inference="similar to AA sequence:ricco:30169.m006551" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc456t15; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7628t1" CDS complement(join(27338170..27338282,27338658..27338897, 27338981..27339044,27339136..27339441,27339524..27339738, 27339897..27340191,27340333..27340497,27340580..27341167, 27341282..27341368,27341446..27341766,27341959..27344016)) /locus_tag="TCM_015319" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006551; paralog of Thecc1EG015324t1" /codon_start=1 /product="Multidrug resistance-associated protein 14 isoform 1" /protein_id="EOY23416.1" /db_xref="TAIR:AT3G59140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYS2" /translation="MEHLWTMFCGEPACSDSDGKPCNSTFWHLTHPSSCINQAMIICF DILLSIMLLFNMIQKSSSKTVGIPARFRHRSALQTASAVFNGCLGLVYLCFGIWILEE KLRKTQTLLPFNWWLLALFQGCTWLLVGLTVSLRGNRLPKTPLRLLSILALIFAAIVC VLSIFAAILNEIVTVNIVLNVLSLPGAILLVLCAYKGYKHEDGDQDTNENGAYAPLNA EANGSAKVDYNAQVTPFSTAGFLSKFSFWWLNSLMRKGREKTLQEEDIPKLREAEKAK SCYLLFLEQLNRQKQAKPSSQPSILKTIILCHWREILVSGFFALLKILTVSSGPLLLN AFILVAEGKGSFKYEGYLLAILLFFAKSLESLSQRQWYFRSRLIGLKVRSLLTAAIYK KQLRLSNAARLMHSSGEITNYVTVDAYRIGEFPFWFHQTWTTSLQLCFALIILFGAVG LATIAALVVIILTVLCNTPLAKLQHMFQSKLMTAQDERLKASSEALISMKVLKLYAWE SHFKKVIENLRAVEYKWLSAVQLRKAYNGFLFYSSPVLVSAATFGACYFLKIPLHASN VFTFVATLRLVQDPITSIPDVIGIVIQAKVALKRVVKFFEAPELQSANVRQKRHMENA DLAISIKSGWFSWEENSSKPTLRNITLDVTMGEKVAVCGEVGSGKSTLLASILGEVPN VQGSIQAFGKIAYVSQTAWIQTGTIQDNILFGSAMDRQRYEETLERCSLVKDLELMPY GDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLFNDYVME ALSGKAVLLVTHQVDFLPAFNSVLLMSDGEILQAAPYHQLLASSQEFQDLVNAHKETA GSGRVAEVNSSDKHGTSTREIKKSYVEKQFKISKGDQLIKQEERERGDIGFKPYIQYL NQDKGFLFFSISALSHLLFVGGQISQNSWMAASVDNPNVSPLKLIAVYLVIGFFSTLL LLCRSLFIFTLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSVDLSIVDLDV PFSLIFTVGATINAYSNLGVLAVVTWQVLFVSVPVIYAAICLQKYYLSTAKELMRING TTKSLVANHLAESIAGTVTIRAFEEEERFFAKNLHLTDTNASPFFHSFAANEWLIQRL ETLSATVLASAAFCMVLLPPGTFSSGFIGMTLSYGLSLNMSLVFSVQSQCTIANYIIS VERLNQYMYIPSEAPEVIEENRPPSNWPAMGKVDICDLQIRYRPDTPLVLRGISCTFQ GGHKIGIVGRTGSGKTTLISALFRLVEPAGGKIIVDGIDICTIGLHDLRSRFGIIPQD PTLFNGTVRYNLDPLSQHTDQEIWEVLDKCQLREAVQEKEEGLDSLVVEDGSNWSMGQ RQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVM DCTMVLAISDGKLVEYDEPTKLMEREDSLFGQLVKEYWSHYQAAESH" mRNA complement(join(<27339650..27339678,27339897..27340191, 27340333..27340497,27340580..27341167,27341282..27341368, 27341446..27341766,27341959..27344043,27344402..27344596, 27367909..27368107)) /locus_tag="TCM_015319" /product="Multidrug resistance-associated protein 14 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006551" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015324t4" /inference="similar to AA sequence:ricco:30169.m006551" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc956t19; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc956t19; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7592t1" CDS complement(join(<27339650..27339678,27339897..27340191, 27340333..27340497,27340580..27341167,27341282..27341368, 27341446..27341766,27341959..27344016)) /locus_tag="TCM_015319" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006551; paralog of Thecc1EG015324t4" /codon_start=1 /product="Multidrug resistance-associated protein 14 isoform 2" /protein_id="EOY23417.1" /db_xref="TAIR:AT3G59140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYS2" /translation="MEHLWTMFCGEPACSDSDGKPCNSTFWHLTHPSSCINQAMIICF DILLSIMLLFNMIQKSSSKTVGIPARFRHRSALQTASAVFNGCLGLVYLCFGIWILEE KLRKTQTLLPFNWWLLALFQGCTWLLVGLTVSLRGNRLPKTPLRLLSILALIFAAIVC VLSIFAAILNEIVTVNIVLNVLSLPGAILLVLCAYKGYKHEDGDQDTNENGAYAPLNA EANGSAKVDYNAQVTPFSTAGFLSKFSFWWLNSLMRKGREKTLQEEDIPKLREAEKAK SCYLLFLEQLNRQKQAKPSSQPSILKTIILCHWREILVSGFFALLKILTVSSGPLLLN AFILVAEGKGSFKYEGYLLAILLFFAKSLESLSQRQWYFRSRLIGLKVRSLLTAAIYK KQLRLSNAARLMHSSGEITNYVTVDAYRIGEFPFWFHQTWTTSLQLCFALIILFGAVG LATIAALVVIILTVLCNTPLAKLQHMFQSKLMTAQDERLKASSEALISMKVLKLYAWE SHFKKVIENLRAVEYKWLSAVQLRKAYNGFLFYSSPVLVSAATFGACYFLKIPLHASN VFTFVATLRLVQDPITSIPDVIGIVIQAKVALKRVVKFFEAPELQSANVRQKRHMENA DLAISIKSGWFSWEENSSKPTLRNITLDVTMGEKVAVCGEVGSGKSTLLASILGEVPN VQGSIQAFGKIAYVSQTAWIQTGTIQDNILFGSAMDRQRYEETLERCSLVKDLELMPY GDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLFNDYVME ALSGKAVLLVTHQVDFLPAFNSVLLMSDGEILQAAPYHQLLASSQEFQDLVNAHKETA GSGRVAEVNSSDKHGTSTREIKKSYVEKQFKISKGDQLIKQEERERGDIGFKPYIQYL NQDKGFLFFSISALSHLLFVGGQISQNSWMAASVDNPNVSPLKLIAVYLVIGFFSTLL LLCRSLFIFTLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSVDLSIVDLDV PFSLIFTVGATINAYSNLGVLAVVTWQVLFVSVPVIYAAICLQKYYLSTAKELMRING TTKSLVANHLAESIAGTVTIRAFEEEERFFAKNLHLTDTNASPFFHSFAANEWLIQRL ETLSATVLASAAFCMVLLPPGTFSSVQSQCTIANY" mRNA complement(join(<27339654..27339704,27362561..27362594, 27362753..27363047,27363191..27363355,27363438..27364025, 27364140..27364226,27364294..27364614,27364807..27366891, 27367673..27368107)) /locus_tag="TCM_015324" /product="Multidrug resistance-associated protein 14 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015319t1" /inference="similar to AA sequence:ricco:30169.m006551" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc689t10; alternateUTRof:Thecc1EG015324t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7628t1" mRNA complement(join(<27339654..27339704,27362561..27362594, 27362753..27363047,27363191..27363355,27363438..27364025, 27364140..27364226,27364294..27364614,27364807..27366891, 27367250..27367315,27367536..27367653)) /locus_tag="TCM_015324" /product="Multidrug resistance-associated protein 14 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015319t1" /inference="similar to AA sequence:ricco:30169.m006551" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc689t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7628t1" CDS complement(join(<27339656..27339704,27362561..27362594, 27362753..27363047,27363191..27363355,27363438..27364025, 27364140..27364226,27364294..27364614,27364807..27366864)) /locus_tag="TCM_015324" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006551; paralog of Thecc1EG015319t1" /codon_start=1 /product="Multidrug resistance-associated protein 14 isoform 3" /protein_id="EOY23420.1" /db_xref="TAIR:AT3G59140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYS2" /translation="MEHLWTMFCGEPACSDSDGKPCNSTFWHLTHPSSCINQAMIICF DILLSIMLLFNMIQKSSSKTVGIPARFRHRSALQTASAVFNGCLGLVYLCFGIWILEE KLRKTQTLLPFNWWLLALFQGCTWLLVGLTVSLRGNRLLKTPLRLLSILALIFAVILC VLSIFAAILNEIVTVNIVLNVLSLPGAILLLLCAYKRYKHEDGEQDTNENGLYAPLNA EANGSAKVDYNAQVTPFSTAGFLSKFSFWWLNPLMRKGREKTLQEEDIPKLREAEKAE SCYLLFLEQLNRQKQAKPSSQPSILKTIILCHWKEILVSGFFALVKILTVSSGPLLLN AFILVAEGKGSFKYEGYLLAISLFFAKSLESLSQRQWYFRSRLIGLKVRSLLTAAIYK KQLRLSNAARLMHSSGEITNYVTVDAYRIGEFPFWFHQTWTTSLQLCFALIILVRAVG LATIAALVVIILTVLCNTPLAKLQHRFQSKLMTAQDERLKASSEALISMKVLKLYAWE SHFKKVIENLRAVEYKWLSAVQLRKAYNGFLFWSSPVLVSAATFGACYFLKIPLHASN VFTFVATLRLVQDPIRSIPDVIGIVIQANVALKRVVKFLEAPELQSANVRQKRHMENA DLAVSIKSGGFSWEENSSKPTLRNITLEVTIGEKVAVCGEVGSGKSTLLAAILGEVPN VQGSIQVFGKIAYVSQTAWIQTGTIQDNILFGSAMDRQRYEETLEKCSLVKDLELMPY GDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLFNDYVME ALSGKAVLLVTHQVDFLPAFNSVLLMSDGEILQAAPYHQLLASSQEFQDLVDAHKETA GSGRVAEVNSSDKHGTSTREIKKSYVDKQFKISKGDQLIKQEERERGDIGFKPYIQYL NQDKGFLFFSISALSHLLFVGGQISQNSWMAASVDNPNVSPLKLIAVYLVIGFFSTLL LLCRSLSIVTLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSVDLSIVDLDV PFSLIFAVGATINAYSNLGVLAVVTWQVLFVSVPVIYAAICLQKYYFSTAKELMRING TTKSLVANHLAESIAGAVTIRAFEEEERFFAKNLHLVDTNASPFFHSFAANEWLIQRL ETLSATVLASAALCMVLLPPGTFSSGFIGMALSYGLSLNMSLVFSVQSQCTIA" CDS complement(join(<27339656..27339704,27362561..27362594, 27362753..27363047,27363191..27363355,27363438..27364025, 27364140..27364226,27364294..27364614,27364807..27366864)) /locus_tag="TCM_015324" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30169.m006551; paralog of Thecc1EG015319t1" /codon_start=1 /product="Multidrug resistance-associated protein 14 isoform 3" /protein_id="EOY23421.1" /db_xref="TAIR:AT3G59140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYS2" /translation="MEHLWTMFCGEPACSDSDGKPCNSTFWHLTHPSSCINQAMIICF DILLSIMLLFNMIQKSSSKTVGIPARFRHRSALQTASAVFNGCLGLVYLCFGIWILEE KLRKTQTLLPFNWWLLALFQGCTWLLVGLTVSLRGNRLLKTPLRLLSILALIFAVILC VLSIFAAILNEIVTVNIVLNVLSLPGAILLLLCAYKRYKHEDGEQDTNENGLYAPLNA EANGSAKVDYNAQVTPFSTAGFLSKFSFWWLNPLMRKGREKTLQEEDIPKLREAEKAE SCYLLFLEQLNRQKQAKPSSQPSILKTIILCHWKEILVSGFFALVKILTVSSGPLLLN AFILVAEGKGSFKYEGYLLAISLFFAKSLESLSQRQWYFRSRLIGLKVRSLLTAAIYK KQLRLSNAARLMHSSGEITNYVTVDAYRIGEFPFWFHQTWTTSLQLCFALIILVRAVG LATIAALVVIILTVLCNTPLAKLQHRFQSKLMTAQDERLKASSEALISMKVLKLYAWE SHFKKVIENLRAVEYKWLSAVQLRKAYNGFLFWSSPVLVSAATFGACYFLKIPLHASN VFTFVATLRLVQDPIRSIPDVIGIVIQANVALKRVVKFLEAPELQSANVRQKRHMENA DLAVSIKSGGFSWEENSSKPTLRNITLEVTIGEKVAVCGEVGSGKSTLLAAILGEVPN VQGSIQVFGKIAYVSQTAWIQTGTIQDNILFGSAMDRQRYEETLEKCSLVKDLELMPY GDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLFNDYVME ALSGKAVLLVTHQVDFLPAFNSVLLMSDGEILQAAPYHQLLASSQEFQDLVDAHKETA GSGRVAEVNSSDKHGTSTREIKKSYVDKQFKISKGDQLIKQEERERGDIGFKPYIQYL NQDKGFLFFSISALSHLLFVGGQISQNSWMAASVDNPNVSPLKLIAVYLVIGFFSTLL LLCRSLSIVTLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSVDLSIVDLDV PFSLIFAVGATINAYSNLGVLAVVTWQVLFVSVPVIYAAICLQKYYFSTAKELMRING TTKSLVANHLAESIAGAVTIRAFEEEERFFAKNLHLVDTNASPFFHSFAANEWLIQRL ETLSATVLASAALCMVLLPPGTFSSGFIGMALSYGLSLNMSLVFSVQSQCTIA" mobile_element complement(27347881..27349487) /note="source:CACAO_M_S_E84261_F4_scaffold_6 202 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27350120..27352083) /note="source:INTACT89_F140_scaffold_9-int 1 1952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27350329..27352088 /note="source:INTACT36_F116_scaffold_6-int 3321 5090" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27352084..27352286) /note="source:CACAO_M_S_E19555_F4_scaffold_3 4 206" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27352287..27352340 /note="source:CACAO_M_E72142_F322_scaffold_10 744 797" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27356416..27359860 /locus_tag="TCM_015323" /note="dbxref CacaoGD:Thecc1EG015323" mRNA join(27356416..27356674,27359720..27359860) /locus_tag="TCM_015323" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13100.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS join(27356487..27356674,27359720..27359825) /locus_tag="TCM_015323" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23422.1" /translation="MDKKKAKKGFLYPKEKEQNGVVLSKVHRHHTVHFELCFMDQGSG LGTPRAAQSTWATILAQARYLKSGPGNLERDVERRFSYALSREDIENAILGGP" mobile_element complement(27356540..27356613) /note="source:INTACT89_F140_scaffold_9-int 1503 1575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27357036..27358027) /note="source:CACAO_M_E49205_F4_scaffold_6 2139 3166" /mobile_element_type="retrotransposon:LTR/Copia" mRNA complement(join(27360491..27361120,27361508..27361747, 27361830..27361893,27361992..27362297,27362380..27362594, 27362753..27363047,27363191..27363355,27363438..27364025, 27364140..27364226,27364294..27364614,27364807..27366891, 27367250..27367315,27367673..27368111)) /locus_tag="TCM_015324" /product="Multidrug resistance-associated protein 14 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015319t1" /inference="similar to AA sequence:ricco:30169.m006551" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7628t1" CDS complement(join(27361008..27361120,27361508..27361747, 27361830..27361893,27361992..27362297,27362380..27362594, 27362753..27363047,27363191..27363355,27363438..27364025, 27364140..27364226,27364294..27364614,27364807..27366864)) /locus_tag="TCM_015324" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006551; paralog of Thecc1EG015319t1" /codon_start=1 /product="Multidrug resistance-associated protein 14 isoform 1" /protein_id="EOY23418.1" /db_xref="TAIR:AT3G59140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYS2" /translation="MEHLWTMFCGEPACSDSDGKPCNSTFWHLTHPSSCINQAMIICF DILLSIMLLFNMIQKSSSKTVGIPARFRHRSALQTASAVFNGCLGLVYLCFGIWILEE KLRKTQTLLPFNWWLLALFQGCTWLLVGLTVSLRGNRLLKTPLRLLSILALIFAVILC VLSIFAAILNEIVTVNIVLNVLSLPGAILLLLCAYKRYKHEDGEQDTNENGLYAPLNA EANGSAKVDYNAQVTPFSTAGFLSKFSFWWLNPLMRKGREKTLQEEDIPKLREAEKAE SCYLLFLEQLNRQKQAKPSSQPSILKTIILCHWKEILVSGFFALVKILTVSSGPLLLN AFILVAEGKGSFKYEGYLLAISLFFAKSLESLSQRQWYFRSRLIGLKVRSLLTAAIYK KQLRLSNAARLMHSSGEITNYVTVDAYRIGEFPFWFHQTWTTSLQLCFALIILVRAVG LATIAALVVIILTVLCNTPLAKLQHRFQSKLMTAQDERLKASSEALISMKVLKLYAWE SHFKKVIENLRAVEYKWLSAVQLRKAYNGFLFWSSPVLVSAATFGACYFLKIPLHASN VFTFVATLRLVQDPIRSIPDVIGIVIQANVALKRVVKFLEAPELQSANVRQKRHMENA DLAVSIKSGGFSWEENSSKPTLRNITLEVTIGEKVAVCGEVGSGKSTLLAAILGEVPN VQGSIQVFGKIAYVSQTAWIQTGTIQDNILFGSAMDRQRYEETLEKCSLVKDLELMPY GDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLFNDYVME ALSGKAVLLVTHQVDFLPAFNSVLLMSDGEILQAAPYHQLLASSQEFQDLVDAHKETA GSGRVAEVNSSDKHGTSTREIKKSYVDKQFKISKGDQLIKQEERERGDIGFKPYIQYL NQDKGFLFFSISALSHLLFVGGQISQNSWMAASVDNPNVSPLKLIAVYLVIGFFSTLL LLCRSLSIVTLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSVDLSIVDLDV PFSLIFAVGATINAYSNLGVLAVVTWQVLFVSVPVIYAAICLQKYYFSTAKELMRING TTKSLVANHLAESIAGAVTIRAFEEEERFFAKNLHLVDTNASPFFHSFAANEWLIQRL ETLSATVLASAALCMVLLPPGTFSSGFIGMALSYGLSLNMSLVFSIQNQCTIANYIIS VERLNQYMYIPSEAPEVIEENRPPSNWPAVGKVDICDLQIRYRPDTPFVLRGISCTFQ GGHKIGIVGRTGSGKTTLISALFRLVEPAGGKITVDGIDICTIGLHDLRSRFGVIPQD PTLFNGTVRYNLDPLSQHTDQEIWKVLDKCQLREAVQEKEEGLDSLVVEDGSNWSMGQ RQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVM DCTMVLAISDGKLVEYDEPRKLMEREDSLFGQLVKEYWSHYQSAESH" CDS complement(join(27361654..27361741,27361826..27361893, 27361992..27362297,27362380..27362594,27362753..27363047, 27363191..27363355,27363438..27364025,27364140..27364226, 27364294..27364614,27364807..27366864)) /locus_tag="TCM_015324" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006551; paralog of Thecc1EG015319t1" /codon_start=1 /product="Multidrug resistance-associated protein 14 isoform 2" /protein_id="EOY23419.1" /db_xref="TAIR:AT3G59140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYS2" /translation="MEHLWTMFCGEPACSDSDGKPCNSTFWHLTHPSSCINQAMIICF DILLSIMLLFNMIQKSSSKTVGIPARFRHRSALQTASAVFNGCLGLVYLCFGIWILEE KLRKTQTLLPFNWWLLALFQGCTWLLVGLTVSLRGNRLLKTPLRLLSILALIFAVILC VLSIFAAILNEIVTVNIVLNVLSLPGAILLLLCAYKRYKHEDGEQDTNENGLYAPLNA EANGSAKVDYNAQVTPFSTAGFLSKFSFWWLNPLMRKGREKTLQEEDIPKLREAEKAE SCYLLFLEQLNRQKQAKPSSQPSILKTIILCHWKEILVSGFFALVKILTVSSGPLLLN AFILVAEGKGSFKYEGYLLAISLFFAKSLESLSQRQWYFRSRLIGLKVRSLLTAAIYK KQLRLSNAARLMHSSGEITNYVTVDAYRIGEFPFWFHQTWTTSLQLCFALIILVRAVG LATIAALVVIILTVLCNTPLAKLQHRFQSKLMTAQDERLKASSEALISMKVLKLYAWE SHFKKVIENLRAVEYKWLSAVQLRKAYNGFLFWSSPVLVSAATFGACYFLKIPLHASN VFTFVATLRLVQDPIRSIPDVIGIVIQANVALKRVVKFLEAPELQSANVRQKRHMENA DLAVSIKSGGFSWEENSSKPTLRNITLEVTIGEKVAVCGEVGSGKSTLLAAILGEVPN VQGSIQVFGKIAYVSQTAWIQTGTIQDNILFGSAMDRQRYEETLEKCSLVKDLELMPY GDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLFNDYVME ALSGKAVLLVTHQVDFLPAFNSVLLMSDGEILQAAPYHQLLASSQEFQDLVDAHKETA GSGRVAEVNSSDKHGTSTREIKKSYVDKQFKISKGDQLIKQEERERGDIGFKPYIQYL NQDKGFLFFSISALSHLLFVGGQISQNSWMAASVDNPNVSPLKLIAVYLVIGFFSTLL LLCRSLSIVTLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSVDLSIVDLDV PFSLIFAVGATINAYSNLGVLAVVTWQVLFVSVPVIYAAICLQKYYFSTAKELMRING TTKSLVANHLAESIAGAVTIRAFEEEERFFAKNLHLVDTNASPFFHSFAANEWLIQRL ETLSATVLASAALCMVLLPPGTFSSGFIGMALSYGLSLNMSLVFSIQNQCTIANYIIS VERLNQYMYIPSEAPEVIEENRPPSNWPAVGKVDICDLQIRYRPDTPFVLRGISCTFQ GGHKIGIVGRTGSGKTTLISALFRLVEPAGGKITVDGIDICTIGLHDLRSRFGVIPQD PTLFNGTVRYNLDPLSQHTDQEIWKVLDKCQLREAVQEKEEGLDSLGKRWIKLEHGTT ATILFGPCPLEEKSDIGA" mobile_element 27370343..27372166 /note="source:INTACT167_F5_scaffold_2-int 3834 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27372135..27372250) /note="source:CACAO_M_E34934_F98_scaffold_5 2031 2108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27372168..27372233 /note="source:CACAO_M_E72142_F322_scaffold_10 744 802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27374216..27374226 /note="source:CACAO_on_S_E58_scaffold_2 1929 1939" /mobile_element_type="transposon:TIR/Mutator" mobile_element 27374227..27377339 /note="source:CACAO_M_E22953_F359_scaffold_3 1 3113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27377245..27377351) /note="source:CACAO_M_S_E15347_F33_scaffold_2 5792 5900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27377264..27377371 /note="source:CACAO_M_S_E99244_F4_scaffold_9 6267 6377" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(27379953..27380981) /locus_tag="TCM_015325" /note="dbxref CacaoGD:Thecc1EG015325" mRNA complement(join(27379953..27380398,27380553..27380981)) /locus_tag="TCM_015325" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage" CDS complement(join(27380288..27380398,27380553..27380771)) /locus_tag="TCM_015325" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23423.1" /translation="MFGMAKCAFELQLLSLYAAIFIRLVQLSISQFSVRHSRALYHLH PQTDKCDQAFLDLGDLGAAATTHHAPLNLVIIMRALPNESIITEEPKNIYISGICWPN SRNMFPV" gene 27381356..27385620 /locus_tag="TCM_015326" /note="dbxref CacaoGD:Thecc1EG015326" mRNA join(27381356..27381474,27381582..27381963, 27382110..27382173,27382338..27382387,27382507..27382700, 27383157..27383220,27383318..27383390,27383523..27383643, 27384194..27384281,27384394..27384444,27384775..27384876, 27384962..27385074,27385417..27385620) /locus_tag="TCM_015326" /product="Galactosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028724001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016308t1" /inference="similar to AA sequence:Phytozome:Glyma04g41810.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7588t5" mRNA join(<27381443..27381474,27381844..27381963, 27382110..27382173,27382338..27382387,27382507..27382700, 27383157..27383220,27383318..27383390,27383523..27383643, 27384194..27384281,27384394..27384444,27384775..27384876, 27384962..>27384987) /locus_tag="TCM_015326" /product="Beta-1,3-galactosyltransferase 11 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028724001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016308t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06020.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc972t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7588t5" CDS join(<27381443..27381474,27381844..27381963, 27382110..27382173,27382338..27382387,27382507..27382700, 27383157..27383220,27383318..27383390,27383523..27383643, 27384194..27384281,27384394..27384444,27384775..27384876, 27384962..>27384986) /locus_tag="TCM_015326" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016308t1" /codon_start=1 /product="Beta-1,3-galactosyltransferase 11 isoform 2" /protein_id="EOY23425.1" /db_xref="Phytozome:POPTR_0015s06020.1" /db_xref="TAIR:AT5G53340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F27" /translation="SRQNPLWLYKRRQMQSKGSSSMVSSMVFRTRISSLLISMFATFA SFYVAGRLWQDAENRVYLIKELDRITGLGQSAISVDDTLKIIACREQHKKLSALEMDL AAARQEGFTSKTSSDTDGAVSKRRPLVVIGVLTRFGRKNNRDAIRKAWMGSGATLKKL ENEKGIVSRFVIGRSANRGDSLDRSIDDEYRQTNDLMILDQVEAPGELPKKAEMFFAL AADRWDAEFYAKVNDDVYVNIDALGATLTSHIDKRRVYIGCMKSGEVFSEPSHKWYEP DWWKFGDKKSMNSSFGASNRYFRHASGEMYVISGALAKFISINRSLLRTYAH" mRNA join(27381581..27381963,27382110..27382173, 27382338..27382387,27382507..27382700,27383157..27383220, 27383318..27383390,27383523..27383643,27384194..27384281, 27384394..27384444,27384775..27384831,27384962..>27385074) /locus_tag="TCM_015326" /product="Galactosyltransferase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028724001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016308t1" /inference="similar to AA sequence:ricco:30169.m006550" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc980t11_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7588t5" mRNA join(27381581..27381963,27382110..27382173, 27382338..27382387,27382507..27382700,27383157..27383220, 27383318..27383390,27383523..27383643,27384194..27384281, 27384394..27384444,27384805..27384876,27384962..>27384991) /locus_tag="TCM_015326" /product="Galactosyltransferase family protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028724001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016308t1" /inference="similar to AA sequence:ricco:30169.m006550" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc980t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7588t5" mRNA join(27381737..27381963,27382110..27382173, 27382338..27382387,27382507..27382700,27383157..27383220, 27383318..27383390,27383523..27383643,27384194..27384281, 27384394..27384444,27384805..27384876,27384962..27385074, 27385417..27385580) /locus_tag="TCM_015326" /product="Galactosyltransferase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028724001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016308t1" /inference="similar to AA sequence:Phytozome:Glyma04g41810.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02273t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7588t5" mRNA join(27381737..27381963,27382110..27382173, 27382338..27382387,27382507..27382700,27383157..27383220, 27383318..27383390,27383523..27383643,27384194..27384281, 27384394..27384444,27384805..27384831,27384962..27385074, 27385417..27385580) /locus_tag="TCM_015326" /product="Galactosyltransferase family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028724001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016308t1" /inference="similar to AA sequence:Phytozome:Glyma04g41810.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02273t00002; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7588t5" CDS join(27381851..27381963,27382110..27382173, 27382338..27382387,27382507..27382700,27383157..27383220, 27383318..27383390,27383523..27383643,27384194..27384281, 27384394..27384444,27384775..27384876,27384962..27385074, 27385417..27385439) /locus_tag="TCM_015326" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016308t1" /codon_start=1 /product="Galactosyltransferase family protein isoform 1" /protein_id="EOY23424.1" /db_xref="Phytozome:Glyma04g41810.1" /db_xref="TAIR:AT5G53340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F27" /translation="MQSKGSSSMVSSMVFRTRISSLLISMFATFASFYVAGRLWQDAE NRVYLIKELDRITGLGQSAISVDDTLKIIACREQHKKLSALEMDLAAARQEGFTSKTS SDTDGAVSKRRPLVVIGVLTRFGRKNNRDAIRKAWMGSGATLKKLENEKGIVSRFVIG RSANRGDSLDRSIDDEYRQTNDLMILDQVEAPGELPKKAEMFFALAADRWDAEFYAKV NDDVYVNIDALGATLTSHIDKRRVYIGCMKSGEVFSEPSHKWYEPDWWKFGDKKSMNS SFGASNRYFRHASGEMYVISGALAKFISINRSLLRTYAHDDVSAGSWFLGLDVNYVDE GKFCCSSWSTGAICSGV" CDS join(27381851..27381963,27382110..27382173, 27382338..27382387,27382507..27382700,27383157..27383220, 27383318..27383390,27383523..27383643,27384194..27384281, 27384394..27384444,27384805..27384876,27384962..27385074, 27385417..27385439) /locus_tag="TCM_015326" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG016308t1" /codon_start=1 /product="Galactosyltransferase family protein isoform 3" /protein_id="EOY23426.1" /db_xref="Phytozome:Glyma04g41810.1" /db_xref="TAIR:AT5G53340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F27" /translation="MQSKGSSSMVSSMVFRTRISSLLISMFATFASFYVAGRLWQDAE NRVYLIKELDRITGLGQSAISVDDTLKIIACREQHKKLSALEMDLAAARQEGFTSKTS SDTDGAVSKRRPLVVIGVLTRFGRKNNRDAIRKAWMGSGATLKKLENEKGIVSRFVIG RSANRGDSLDRSIDDEYRQTNDLMILDQVEAPGELPKKAEMFFALAADRWDAEFYAKV NDDVYVNIDALGATLTSHIDKRRVYIGCMKSGEVFSEPSHKWYEPDWWKFGDKKSYFR HASGEMYVISGALAKFISINRSLLRTYAHDDVSAGSWFLGLDVNYVDEGKFCCSSWST GAICSGV" CDS join(27381851..27381963,27382110..27382173, 27382338..27382387,27382507..27382700,27383157..27383220, 27383318..27383390,27383523..27383643,27384194..27384281, 27384394..27384444,27384805..27384831,27384962..27385074, 27385417..27385439) /locus_tag="TCM_015326" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG016308t1" /codon_start=1 /product="Galactosyltransferase family protein isoform 5" /protein_id="EOY23428.1" /db_xref="Phytozome:Glyma04g41810.1" /db_xref="TAIR:AT5G53340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F27" /translation="MQSKGSSSMVSSMVFRTRISSLLISMFATFASFYVAGRLWQDAE NRVYLIKELDRITGLGQSAISVDDTLKIIACREQHKKLSALEMDLAAARQEGFTSKTS SDTDGAVSKRRPLVVIGVLTRFGRKNNRDAIRKAWMGSGATLKKLENEKGIVSRFVIG RSANRGDSLDRSIDDEYRQTNDLMILDQVEAPGELPKKAEMFFALAADRWDAEFYAKV NDDVYVNIDALGATLTSHIDKRRVYIGCMKSGEVFSEPSHKWYEPDWWKFGDKKSYFR HASGEISLLRTYAHDDVSAGSWFLGLDVNYVDEGKFCCSSWSTGAICSGV" CDS join(27381851..27381963,27382110..27382173, 27382338..27382387,27382507..27382700,27383157..27383220, 27383318..27383390,27383523..27383643,27384194..27384281, 27384394..27384444,27384775..27384831,27384962..>27385073) /locus_tag="TCM_015326" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30169.m006550; paralog of Thecc1EG016308t1" /codon_start=1 /product="Galactosyltransferase family protein isoform 4" /protein_id="EOY23427.1" /db_xref="TAIR:AT5G53340.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F27" /translation="MQSKGSSSMVSSMVFRTRISSLLISMFATFASFYVAGRLWQDAE NRVYLIKELDRITGLGQSAISVDDTLKIIACREQHKKLSALEMDLAAARQEGFTSKTS SDTDGAVSKRRPLVVIGVLTRFGRKNNRDAIRKAWMGSGATLKKLENEKGIVSRFVIG RSANRGDSLDRSIDDEYRQTNDLMILDQVEAPGELPKKAEMFFALAADRWDAEFYAKV NDDVYVNIDALGATLTSHIDKRRVYIGCMKSGEVFSEPSHKWYEPDWWKFGDKKSMNS SFGASNRYFRHASGEISLLRTYAHDDVSAGSWFLGLDVNYVDEGKFCCSSWST" CDS join(27381851..27381963,27382110..27382173, 27382338..27382387,27382507..27382700,27383157..27383220, 27383318..27383390,27383523..27383643,27384194..27384281, 27384394..27384444,27384805..27384876,27384962..>27384989) /locus_tag="TCM_015326" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30169.m006550; paralog of Thecc1EG016308t1" /codon_start=1 /product="Galactosyltransferase family protein isoform 6" /protein_id="EOY23429.1" /db_xref="TAIR:AT5G53340.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F27" /translation="MQSKGSSSMVSSMVFRTRISSLLISMFATFASFYVAGRLWQDAE NRVYLIKELDRITGLGQSAISVDDTLKIIACREQHKKLSALEMDLAAARQEGFTSKTS SDTDGAVSKRRPLVVIGVLTRFGRKNNRDAIRKAWMGSGATLKKLENEKGIVSRFVIG RSANRGDSLDRSIDDEYRQTNDLMILDQVEAPGELPKKAEMFFALAADRWDAEFYAKV NDDVYVNIDALGATLTSHIDKRRVYIGCMKSGEVFSEPSHKWYEPDWWKFGDKKSYFR HASGEMYVISGALAKFISINRSLLRTYAHD" gene complement(27386059..27388067) /locus_tag="TCM_015327" /note="dbxref CacaoGD:Thecc1EG015327" mRNA complement(join(27386059..27386365,27386986..27387087, 27387275..27387436,27387535..27387587,27387704..27388067)) /locus_tag="TCM_015327" /product="Ubiquitin-associated/translation elongation factor EF1B protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006549" /inference="similar to AA sequence:ricco:30169.m006549" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15365t00001" CDS complement(join(27386231..27386365,27386986..27387087, 27387275..27387436,27387535..27387587,27387704..27387926)) /locus_tag="TCM_015327" /note="dbxref ricco:30169.m006549" /codon_start=1 /product="Ubiquitin-associated/translation elongation factor EF1B protein" /protein_id="EOY23430.1" /db_xref="TAIR:AT5G53330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I524" /translation="MDYDFRNRTGPPYEAQIPMYRQQPTSSSSSSSMPSSHPMYGPSL YPRIGQPAHTVVPPAPRIPSFHHTSSPSSSSGLGVRVALKPEYRITPPPQLLPQVGDI PRSNFQFDFGFERKILAEAENESMNFSRLGLESLSKSTESTSSSGANADPVVSKYIAS GLNREAVTVAVANYGDNPTKVREFVHSYNLLREMGFSSNNVAEALLMYENDTDKALAH FLNNSS" gene complement(27388076..27391981) /locus_tag="TCM_015328" /note="dbxref CacaoGD:Thecc1EG015328" mRNA complement(join(27388076..27388964,27389245..27390722, 27390821..27390876,27391026..27391066,27391615..27391981)) /locus_tag="TCM_015328" /product="HAT transposon superfamily isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006547" /inference="similar to AA sequence:ricco:30169.m006547" /note="transcript variant 1; alternatively spliced; quality class is strong-expresste, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7471t1" mRNA complement(join(27388241..27388964,27389245..27390876, 27391026..27391066,27391615..27391766)) /locus_tag="TCM_015328" /product="HAT transposon superfamily isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016057t1" /inference="similar to AA sequence:ricco:30169.m006547" /note="transcript variant 2; alternatively spliced; quality class is strong-expresste, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc692t5" mRNA complement(join(27388241..27388964,27389245..27391066, 27391615..27391766)) /locus_tag="TCM_015328" /product="HAT transposon superfamily isoform 4" /inference="alignment:exonerate- protein:2:ricco:30169.m006547" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016057t1" /inference="similar to AA sequence:ricco:30169.m006547" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc692t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7471t1" mRNA complement(join(27388241..27388964,27389245..27390876, 27391026..27391066,27391185..27391551)) /locus_tag="TCM_015328" /product="HAT transposon superfamily isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006547" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016057t1" /inference="similar to AA sequence:ricco:30169.m006547" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc692t6; alternateUTRof:Thecc1EG015328t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7471t1" CDS complement(join(27388561..27388964,27389245..27390876, 27391026)) /locus_tag="TCM_015328" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006547; paralog of Thecc1EG016057t1" /codon_start=1 /product="HAT transposon superfamily isoform 2" /protein_id="EOY23432.1" /db_xref="TAIR:AT1G79740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CUK5" /translation="MVREKDVCWEYAEKLDGNKVRCKFCLRVLNGGISRLKHHLSRLP SKGVNPCSKVRDDVTDRVRAILSSKEEIKETSSVKKQKIAEARSPGNISTCSKIIPLE ASSPVAKVFPATSPIAPPSLNSQENVERSIALFFFENKLDFSVARSSSYQAMIDAVGK FGPGFTGPSVETLKTMWLERIKSEVCLQSKDTEKEWATTGCTIIADTWTDNKSRALIN FLVSSPSRTFFHKSVDASSYFKNTKCLADLFDSVIQDFGPENVVQIIMDSSFNYTGIS NHILQNYGTIFVSPCASQCLNLILEEFSKVDWVNRCILQAQTLSKFLYNNASMLDLMK KFTGEQELIRTGITKSVSSFLSLQSMLKQRSRLKHMFNSPEYSTNSSYANKPQSISCI AIVEDNDFWRAVDECVAISEPFLKVLREVSGGKPAVGSIYELMTRAKESIRTYYIMDE GKCKTFLDIVDRKWRDQLHSPLHSAGAFLNPSIQYNQEIKFLGSIKEDFFKVLEKLLP TPELRRDITNQIFTFTRAKGMFACNLAMEARDTVSPGLWWEQFGDSAPVLQRVAIRIL SQVCSTFTFERHWSTFQQIHSEKRNKIDKEILNDLVYINYNLRLARQMRTKSVEADPI QFDDIDMTSEWVEESENPSPTQWLDRFGSALDGGDLNTRQFNAAIFGNDHIFGL" CDS complement(join(27388561..27388964,27389245..27390876, 27391026)) /locus_tag="TCM_015328" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006547; paralog of Thecc1EG016057t1" /codon_start=1 /product="HAT transposon superfamily isoform 2" /protein_id="EOY23433.1" /db_xref="TAIR:AT1G79740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CUK5" /translation="MVREKDVCWEYAEKLDGNKVRCKFCLRVLNGGISRLKHHLSRLP SKGVNPCSKVRDDVTDRVRAILSSKEEIKETSSVKKQKIAEARSPGNISTCSKIIPLE ASSPVAKVFPATSPIAPPSLNSQENVERSIALFFFENKLDFSVARSSSYQAMIDAVGK FGPGFTGPSVETLKTMWLERIKSEVCLQSKDTEKEWATTGCTIIADTWTDNKSRALIN FLVSSPSRTFFHKSVDASSYFKNTKCLADLFDSVIQDFGPENVVQIIMDSSFNYTGIS NHILQNYGTIFVSPCASQCLNLILEEFSKVDWVNRCILQAQTLSKFLYNNASMLDLMK KFTGEQELIRTGITKSVSSFLSLQSMLKQRSRLKHMFNSPEYSTNSSYANKPQSISCI AIVEDNDFWRAVDECVAISEPFLKVLREVSGGKPAVGSIYELMTRAKESIRTYYIMDE GKCKTFLDIVDRKWRDQLHSPLHSAGAFLNPSIQYNQEIKFLGSIKEDFFKVLEKLLP TPELRRDITNQIFTFTRAKGMFACNLAMEARDTVSPGLWWEQFGDSAPVLQRVAIRIL SQVCSTFTFERHWSTFQQIHSEKRNKIDKEILNDLVYINYNLRLARQMRTKSVEADPI QFDDIDMTSEWVEESENPSPTQWLDRFGSALDGGDLNTRQFNAAIFGNDHIFGL" CDS complement(join(27388561..27388964,27389245..27390889)) /locus_tag="TCM_015328" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30169.m006547; paralog of Thecc1EG016057t1" /codon_start=1 /product="HAT transposon superfamily isoform 4" /protein_id="EOY23434.1" /db_xref="TAIR:AT1G79740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CUK5" /translation="MFMAVVREKDVCWEYAEKLDGNKVRCKFCLRVLNGGISRLKHHL SRLPSKGVNPCSKVRDDVTDRVRAILSSKEEIKETSSVKKQKIAEARSPGNISTCSKI IPLEASSPVAKVFPATSPIAPPSLNSQENVERSIALFFFENKLDFSVARSSSYQAMID AVGKFGPGFTGPSVETLKTMWLERIKSEVCLQSKDTEKEWATTGCTIIADTWTDNKSR ALINFLVSSPSRTFFHKSVDASSYFKNTKCLADLFDSVIQDFGPENVVQIIMDSSFNY TGISNHILQNYGTIFVSPCASQCLNLILEEFSKVDWVNRCILQAQTLSKFLYNNASML DLMKKFTGEQELIRTGITKSVSSFLSLQSMLKQRSRLKHMFNSPEYSTNSSYANKPQS ISCIAIVEDNDFWRAVDECVAISEPFLKVLREVSGGKPAVGSIYELMTRAKESIRTYY IMDEGKCKTFLDIVDRKWRDQLHSPLHSAGAFLNPSIQYNQEIKFLGSIKEDFFKVLE KLLPTPELRRDITNQIFTFTRAKGMFACNLAMEARDTVSPGLWWEQFGDSAPVLQRVA IRILSQVCSTFTFERHWSTFQQIHSEKRNKIDKEILNDLVYINYNLRLARQMRTKSVE ADPIQFDDIDMTSEWVEESENPSPTQWLDRFGSALDGGDLNTRQFNAAIFGNDHIFGL " CDS complement(join(27388561..27388964,27389245..27390722, 27390821..27390861)) /locus_tag="TCM_015328" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006547" /codon_start=1 /product="HAT transposon superfamily isoform 1" /protein_id="EOY23431.1" /db_xref="TAIR:AT1G79740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CUK5" /translation="MCVGNMLRNLMEINKVRDDVTDRVRAILSSKEEIKETSSVKKQK IAEARSPGNISTCSKIIPLEASSPVAKVFPATSPIAPPSLNSQENVERSIALFFFENK LDFSVARSSSYQAMIDAVGKFGPGFTGPSVETLKTMWLERIKSEVCLQSKDTEKEWAT TGCTIIADTWTDNKSRALINFLVSSPSRTFFHKSVDASSYFKNTKCLADLFDSVIQDF GPENVVQIIMDSSFNYTGISNHILQNYGTIFVSPCASQCLNLILEEFSKVDWVNRCIL QAQTLSKFLYNNASMLDLMKKFTGEQELIRTGITKSVSSFLSLQSMLKQRSRLKHMFN SPEYSTNSSYANKPQSISCIAIVEDNDFWRAVDECVAISEPFLKVLREVSGGKPAVGS IYELMTRAKESIRTYYIMDEGKCKTFLDIVDRKWRDQLHSPLHSAGAFLNPSIQYNQE IKFLGSIKEDFFKVLEKLLPTPELRRDITNQIFTFTRAKGMFACNLAMEARDTVSPGL WWEQFGDSAPVLQRVAIRILSQVCSTFTFERHWSTFQQIHSEKRNKIDKEILNDLVYI NYNLRLARQMRTKSVEADPIQFDDIDMTSEWVEESENPSPTQWLDRFGSALDGGDLNT RQFNAAIFGNDHIFGL" mobile_element complement(27391992..27392038) /note="source:scaffold_9_CACTA_0934 6326 6372" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27392503..27392570) /note="source:scaffold_8_CACTA_0858 14659 14726" /mobile_element_type="transposon:TIR/CACTA" gene 27395756..27399685 /locus_tag="TCM_015329" /note="dbxref CacaoGD:Thecc1EG015329" mRNA join(27395756..27396166,27396697..27398002, 27398561..27399685) /locus_tag="TCM_015329" /product="Leucine-rich repeat protein kinase family protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006546" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016392t3" /inference="similar to AA sequence:Phytozome:POPTR_0012s01230.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1270t2" CDS join(27396781..27398002,27398561..27399231) /locus_tag="TCM_015329" /note="paralog of Thecc1EG016392t3" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY23435.1" /db_xref="Phytozome:POPTR_0012s01230.1" /db_xref="TAIR:AT4G23740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUQ3" /translation="MGKKMDLLFIFLLGAIFSSILADPVEDKQALLDFLEHVHHSRSF NWSKETSVCNSWTGVTCDNDHSRVIALRLPGMGLRGPIPPKTLSRLSAIQILCLRSNG ISGSFPSDFSELKNLTMLYLQFNKFSGPLPDFSVWNNLTIVNLSNNGFNGSVPPSASK LTHLTAFNLSNNSLSGDIPDLNIPSLQQLDLANNNLTGIVPKSLERFPSWAFFGNNLS SENALPPALPGQPANAQPSKKAKKLSEPALLAIVIGGCVMLFVLIALLMICCYSKRQK EQEFPAKSQIKEVSLKKKASENHDKNNRLVFFEGCNLAFDLEDLLRASAEVLGKGTFG VTYKAALEDATTVAVKRLKEVTSAKREFEQQMEVIGRISHENVSALRAYYYSKDEKLV VHDYYDQGSVSALLHGKRGEGRTSLDWETRLKIAVGAARGIAHIHSQNNGKLVHGNIK ASNIFLNSEGYGCVSDIGLAAVMSPMPPPVMRAAGYRAPEVADTRKATQASDVYSFGV LLLEILTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELLRYPNIEEEMVEML QIGMSCVVRMPEQRPKMSDLVRMVEEIRRANAGSQPSSETKADTTASTPIPQAAEIGP SSSVPQ" mobile_element complement(27399598..27401510) /note="source:CACAO_M_E44172_F105_scaffold_5 1 1959" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 27401266..27405699 /locus_tag="TCM_015331" /note="dbxref CacaoGD:Thecc1EG015331" mRNA join(27401266..27401815,27401946..27402263, 27402343..27402412,27403418..27403476,27403584..27403659, 27403739..27403816,27403908..27403995,27404077..27404284, 27404375..27404490,27404582..27404793,27404910..27404941, 27405053..27405155,27405235..27405343,27405495..27405699) /locus_tag="TCM_015331" /product="Vicianin hydrolase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s23430.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005939t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s23430.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7486t1" CDS join(27402078..27402263,27402343..27402412, 27403418..27403476,27403584..27403659,27403739..27403816, 27403908..27403995,27404077..27404284,27404375..27404490, 27404582..27404793,27404910..27404941,27405053..27405155, 27405235..27405343,27405495..27405663) /locus_tag="TCM_015331" /note="paralog of Thecc1EG005939t1" /codon_start=1 /product="Vicianin hydrolase, putative" /protein_id="EOY23436.1" /db_xref="Phytozome:POPTR_0001s23430.1" /db_xref="TAIR:AT2G44480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2SY66" /translation="MATPGRCILLYHMANQGPFFFICLLALGATTNGANPNHYSKPFN RSSFPAGFTFGAGSAAYQIEGAALEDGKGPSVWDTFARKYPERIADRSTGDVAVDFYH RYKDDIKLMKKVGLDSFRFSISWSRILPKGKLCGGVNPLGVQFYNNLIDDLLANGLKP FVTLLHFDHPQALEDDYGGFLSPKIVDDYVDYADFCFKTFGDRVKHWVTMNEPNGWSL GGANGSAASSPTESYILARHLLLSHAAAVKLYRKKYQASQKGKIGITIITNWFIPKSD ATADRKAASRALDFLFGWFVDPLIFGEYPKSMRSLVGRRLPKFTEAESKMLKGSIDFL GVNYYTANYAENAPPSNTAITANDSRVNLTTEKDGVPIGTPTAVSWLFIYPKGLRGLM LYIKEKYNNPPIYITENGVAEANNASLTVKEALKDSTRIRYLDGHLKSLLKAIREGVN IKGYYVWAFLDDFEWTSGYTLRFGFTYIDFKNNLRRYLKYSAYWFKMFLLH" gene complement(27405787..27408223) /locus_tag="TCM_015332" /note="dbxref CacaoGD:Thecc1EG015332" mRNA complement(join(27405787..27406430,27406512..27406570, 27407346..27407664,27407867..27408151)) /locus_tag="TCM_015332" /product="Myosin heavy chain-related isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006545" /inference="similar to AA sequence:ricco:30169.m006545" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1376t3" mRNA complement(join(27405976..27406430,27406512..27406573, 27407346..27407664,27407867..27408223)) /locus_tag="TCM_015332" /product="Myosin heavy chain-related isoform 3" /inference="alignment:exonerate- protein:2:ricco:30169.m006545" /inference="similar to AA sequence:ricco:30169.m006545" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7496t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1376t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1536t5" mRNA complement(join(27405976..27406430,27406512..27406570, 27407360..27407664,27407867..27408191)) /locus_tag="TCM_015332" /product="Myosin heavy chain-related isoform 4" /inference="alignment:exonerate- protein:2:ricco:30169.m006545" /inference="similar to AA sequence:ricco:30169.m006545" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1515t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1376t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1536t5" mRNA complement(join(27406340..27406430,27406512..27406570, 27407363..27407664,27407867..27408187)) /locus_tag="TCM_015332" /product="Myosin heavy chain-related isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006545" /inference="similar to AA sequence:ricco:30169.m006545" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1376t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1376t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1536t5" CDS complement(join(27406399..27406430,27406512..27406570, 27407346..27407664,27407867..27408125)) /locus_tag="TCM_015332" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006545" /codon_start=1 /product="Myosin heavy chain-related isoform 1" /protein_id="EOY23437.1" /db_xref="TAIR:AT5G53310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASY2" /translation="MNRYKAQRRVQIDESETPKYDDDVQDEEQQEENGIRLRPSDSNV TEDQEPFMGFKARRKASLRREYKGDYLDVPSRPFLMKILQKQGDKQVLFADKVLKFTS SGKMKRRILMITDFAIYIVDPDTDALKRRIALAAVDKMCLSELSDNFFAIIIPTEYDL LMASTRKTEIVTVLVEATKSASEYELEVVFSNRFEYNASADLVKEVQFEEVEGGVRTR IVRK" CDS complement(join(27406399..27406430,27406512..27406573, 27407346..27407664,27407867..27408125)) /locus_tag="TCM_015332" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006545" /codon_start=1 /product="Myosin heavy chain-related isoform 3" /protein_id="EOY23439.1" /db_xref="TAIR:AT5G53310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASY2" /translation="MNRYKAQRRVQIDESETPKYDDDVQDEEQQEENGIRLRPSDSNV TEDQEPFMGFKARRKASLRREYKGDYLDVPSRPFLMKILQKQGDKQVLFADKVLKFTS SGKMKRRILMITDFAIYIVDPDTDALKRRIALAAVDKMCLSELSDNFFAIIIPTEYDL LMASTRKTEIVTVLVEATKSASEYELEVVFSNSRFEYNASADLVKEVQFEEVEGGVRT RIVRK" CDS complement(join(27406565..27406570,27407363..27407664, 27407867..27408125)) /locus_tag="TCM_015332" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006545" /codon_start=1 /product="Myosin heavy chain-related isoform 2" /protein_id="EOY23438.1" /db_xref="TAIR:AT5G53310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASY2" /translation="MNRYKAQRRVQIDESETPKYDDDVQDEEQQEENGIRLRPSDSNV TEDQEPFMGFKARRKASLRREYKGDYLDVPSRPFLMKILQKQGDKQVLFADKVLKFTS SGKMKRRILMITDFAIYIVDPDTDALKRRIALAAVDKMCLSELSDNFFAIIIPTEYDL LMASTRKTEIVTVLVEATKSASEYELEV" CDS complement(join(27406565..27406570,27407360..27407664, 27407867..27408125)) /locus_tag="TCM_015332" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30169.m006545" /codon_start=1 /product="Myosin heavy chain-related isoform 4" /protein_id="EOY23440.1" /db_xref="TAIR:AT5G53310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASY2" /translation="MNRYKAQRRVQIDESETPKYDDDVQDEEQQEENGIRLRPSDSNV TEDQEPFMGFKARRKASLRREYKGDYLDVPSRPFLMKILQKQGDKQVLFADKVLKFTS SGKMKRRILMITDFAIYIVDPDTDALKRRIALAAVDKMCLSELSDNFFAIIIPTEYDL LMASTRKTEIVTVLVEATKSASEYELEVV" mobile_element 27408587..27409350 /note="source:CACAO_Again_on_S_E15_scaffold_1 4 824" /mobile_element_type="transposon:TIR/hAT" gene 27410086..27413910 /locus_tag="TCM_015334" /note="dbxref CacaoGD:Thecc1EG015334" mRNA join(27410086..27410254,27410364..27410441, 27411920..27412047,27412676..27412780,27413167..27413910) /locus_tag="TCM_015334" /product="Ubiquitin-conjugating enzyme 10" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016393t1" /inference="similar to AA sequence:Phytozome:Glyma04g41750.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10108t1" CDS join(27410372..27410441,27411920..27412047, 27412676..27412780,27413167..27413310) /locus_tag="TCM_015334" /note="paralog of Thecc1EG016393t1" /codon_start=1 /product="Ubiquitin-conjugating enzyme 10" /protein_id="EOY23441.1" /db_xref="Phytozome:Glyma04g41750.1" /db_xref="TAIR:AT5G53300.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDK6" /translation="MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSP YAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKV LLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG" gene complement(27413958..27416991) /locus_tag="TCM_015335" /note="dbxref CacaoGD:Thecc1EG015335" mRNA complement(join(27413958..27414924,27416715..27416991)) /locus_tag="TCM_015335" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(join(27414789..27414924,27416715..27416803)) /locus_tag="TCM_015335" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23442.1" /translation="MGSLSRDLTTAGDRPYPPLGPTDTALLKNRTAEFMKVVFRSGIM HHALSRGSSRNRKGKRLLRASIDRPHQCCR" mobile_element 27417684..27417762 /note="source:scaffold_1_CACTA_0005 6268 6346" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27419684..27419824) /note="source:CACAO_M_S_E14849_F156_scaffold_2 649 823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27419691..27419838 /note="source:CACAO_M_E52882_F369_scaffold_8 1395 1506" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27422648..27426191 /locus_tag="TCM_015336" /note="dbxref CacaoGD:Thecc1EG015336" mRNA join(27422648..27422805,27423205..27423266, 27424800..27426191) /locus_tag="TCM_015336" /product="Ethylene-responsive transcription factor, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004193" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016396t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s06070.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1065t4" CDS 27424995..27426080 /locus_tag="TCM_015336" /note="paralog of Thecc1EG016396t1" /codon_start=1 /product="Ethylene-responsive transcription factor, putative" /protein_id="EOY23443.1" /db_xref="Phytozome:POPTR_0015s06070.1" /db_xref="TAIR:AT4G27950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIM8" /translation="MDQSILCPIKYTEHKNVTKIFRKPSLKPKKTSSDHDRTHNNNTP DVPRIVRVSVTDPDATDSSSDEEADFFGRQRVKRYVNEINIEATCKNTATTTISNTNR KRTAAAADVTTACRRPLKLSSSNGNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTY DTAEEAAMVYDNAAIKLRGPDALTNFVTPPAKENKEKPEIINVASVSGYESGDESSHN LSSPTSVLNFRTQSSEETAVEPEKPVQELQEEESKPPPVQEQVVPSECQGETGTNLPD DSGDYLPLDFPFLDEFFNIPVPGLSLFDDTATILPESSVFSEDFSNMLLDTPQDFGCS SSSSISQVDDYFEDIGDLFFSDPLVAL" mobile_element complement(27429282..27429338) /note="source:INTACT383F_F354_scaffold_3-int 2058 2114" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 27433917..27434820 /note="source:CACAO_M_E1542_F20_scaffold_1 1 920" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27438108..27440601) /locus_tag="TCM_015337" /note="dbxref CacaoGD:Thecc1EG015337" mRNA complement(join(27438108..27439105,27440142..27440601)) /locus_tag="TCM_015337" /product="Plastid division protein PDV1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01330.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s06100.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05483t00001" CDS complement(join(27438590..27439105,27440142..27440450)) /locus_tag="TCM_015337" /codon_start=1 /product="Plastid division protein PDV1" /protein_id="EOY23444.1" /db_xref="Phytozome:POPTR_0015s06100.1" /db_xref="TAIR:AT5G53280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FK13" /translation="MKWDMEIEEIEAVLEKIWDLHDKLSDAIHSISRAHFLNSIKALR KSDKKKLYNDAVGDDNRAGFVFVKDFRIDDSESAIQEAKSLNAIRTALENLEDQLEIF HTVHTQQQAERDAAIARLEQSRIILALRLAEHHGKKYKVIDEALAFVGDVHDASHFVS PENLYSTPVSPSGENLASHEGKRSNILIKVLVSSLNFAKKSLKFDHMGGILSNAALFA VSMIAMLHLHQIAYTEHSEKQEDDINRRRTVRKNSQLGGPSSYDCLNHLDVFSARG" gene complement(27440647..27446150) /locus_tag="TCM_015338" /note="dbxref CacaoGD:Thecc1EG015338" mRNA complement(join(27440647..27442699,27446083..27446150)) /locus_tag="TCM_015338" /product="High affinity inorganic phosphate transporter" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045573t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400004209" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(27441017..27442618) /locus_tag="TCM_015338" /note="paralog of Thecc1EG045573t1" /codon_start=1 /product="High affinity inorganic phosphate transporter" /protein_id="EOY23445.1" /db_xref="Phytozome:PGSC0003DMP400004209" /db_xref="TAIR:AT5G43360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N991" /translation="MASNNNLAVLEALDTARTQWYHIKAIVIAGMGFFTDAYDLFCIT TVSKLLGRLYYYDPAHSDRPGKLPHYVNNLVTGVALFGTLSGQLVFGWLGDKLGRKKV YGITLILMVICAICSGLSFGSTADSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANK KTRGAFIAAVFAMQGVGIIFAGLVSMILSAIFRKRYPAPSFKADAIFSTQPEADFLWR IVLMFGALPALLTYYWRMKMPETGRYTALIEGNAKQAAADMGRVLDIELDAEGEKLSQ FKAANQFPLLSHEFYMRHGRHLFGTMSTWFLLDIAFYSQNLTQKDVFPAMGLTRKAPD INAIEEVYETSRAMFIVALLGTFPGYWFTVLFIEKIGRFIIQLVGFLMMSIFMLLLGI KYDYLRDENKLLFVVLYVLTFFFANFGPNSTTFVLPAELFPTRLRSTCHALSAASGKA GAVIGAFVVQSYTLDESVGKIKRAIMVLAFTNLLGFCFTFLVPETKGRSLEEISGEDG GAQNETQMAARRSATIKGSGRLEVI" gene 27446169..27450863 /locus_tag="TCM_015339" /note="dbxref CacaoGD:Thecc1EG015339" mRNA join(27446169..27446509,27446692..27446973, 27447128..27447217,27447357..27447485,27447635..27447694, 27447812..27447982,27448261..27448360,27449130..27449221, 27449371..27449520,27449742..27449800,27450269..>27450301) /locus_tag="TCM_015339" /product="Manganese tracking factor for mitochondrial SOD2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006538" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005201t1" /inference="similar to AA sequence:ricco:30169.m006538" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc855t3; inference alignment:Newbler:10:TSA:cgbaB_g05331t00001" mRNA join(27446286..27446509,27446692..27446973, 27447128..27447217,27447357..27447485,27447635..27447694, 27447812..27447982,27448261..27448360,27449130..27449221, 27449371..27449520,27449742..27449800,27450278..27450376, 27450574..27450863) /locus_tag="TCM_015339" /product="Manganese tracking factor for mitochondrial SOD2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006538" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005201t1" /inference="similar to AA sequence:ricco:30169.m006538" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05331t00001" mRNA join(27446377..27446509,27446692..27446973, 27447128..27447217,27447357..27447485,27447635..27447694, 27447812..27447982,27448261..27448360,27449130..27449221, 27449371..27449510,27449742..27449800,27450278..27450305) /locus_tag="TCM_015339" /product="Manganese tracking factor for mitochondrial SOD2 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30169.m006538" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005201t1" /inference="similar to AA sequence:ricco:30169.m006538" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc861t1; inference alignment:Newbler:10:TSA:cgbaB_g05331t00001" CDS join(27446716..27446973,27447128..27447217, 27447357..27447485,27447635..27447694,27447812..27447982, 27448261..27448360,27449130..27449221,27449371..27449520, 27449742..27449800,27450278..27450376,27450574..27450601) /locus_tag="TCM_015339" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006538; paralog of Thecc1EG005201t1" /codon_start=1 /product="Manganese tracking factor for mitochondrial SOD2 isoform 1" /protein_id="EOY23446.1" /db_xref="TAIR:AT4G27940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944H5" /translation="MVETERRTQYLWTSSEQSSGLEIDGHVLSITEPMITDRDGSEFG APQDQHSTNKSDSNLGIGERAFSAAGAAFLSAIIVNPLDVAKTRLQAQAAGVPYSHPL SNLIGRMAYFGPNMMFADLRCSPSCTRAGVHGTVALCPPDCFQYKGTLDVFNKIIRQE GFSRLWRGTNAGLALAVPTVGIYLPCYDIFRNWMEGLTAQYLPSATPYVPLVAGSLAR SLACATCYPIELARTRMQAFKETQIGKKPPGVFSTLLGVISNVKGTNPQSSLQGYRVL WSGMGAQLARDVPFSGICWSTLEPIRRKLLGLVGEESNVATVLGANFSAGFVAGSLAA AATCPLDVAKTRRQIEKDPVRALRMTTRQTLMEVWRDGGMRGLFTGAGPRVGRAGPSV GIVVSFYEVVKSFSLDLKV" CDS join(27446716..27446973,27447128..27447217, 27447357..27447485,27447635..27447694,27447812..27447982, 27448261..27448360,27449130..27449221,27449371..27449520, 27449742..27449800,27450269..>27450299) /locus_tag="TCM_015339" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006538; paralog of Thecc1EG005201t1" /codon_start=1 /product="Manganese tracking factor for mitochondrial SOD2 isoform 2" /protein_id="EOY23447.1" /db_xref="TAIR:AT4G27940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944H5" /translation="MVETERRTQYLWTSSEQSSGLEIDGHVLSITEPMITDRDGSEFG APQDQHSTNKSDSNLGIGERAFSAAGAAFLSAIIVNPLDVAKTRLQAQAAGVPYSHPL SNLIGRMAYFGPNMMFADLRCSPSCTRAGVHGTVALCPPDCFQYKGTLDVFNKIIRQE GFSRLWRGTNAGLALAVPTVGIYLPCYDIFRNWMEGLTAQYLPSATPYVPLVAGSLAR SLACATCYPIELARTRMQAFKETQIGKKPPGVFSTLLGVISNVKGTNPQSSLQGYRVL WSGMGAQLARDVPFSGICWSTLEPIRRKLLGLVGEESNVATVLGANFSAGFVAGSLAA AATCPLDVAKTRRQIEKDPVRALRMTTRQTLMEVWSWNRDGGMRGL" CDS join(27446716..27446973,27447128..27447217, 27447357..27447485,27447635..27447694,27447812..27447982, 27448261..27448360,27449130..27449221,27449371..27449510, 27449742..27449754) /locus_tag="TCM_015339" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006538; paralog of Thecc1EG005201t1" /codon_start=1 /product="Manganese tracking factor for mitochondrial SOD2 isoform 3" /protein_id="EOY23448.1" /db_xref="TAIR:AT4G27940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944H5" /translation="MVETERRTQYLWTSSEQSSGLEIDGHVLSITEPMITDRDGSEFG APQDQHSTNKSDSNLGIGERAFSAAGAAFLSAIIVNPLDVAKTRLQAQAAGVPYSHPL SNLIGRMAYFGPNMMFADLRCSPSCTRAGVHGTVALCPPDCFQYKGTLDVFNKIIRQE GFSRLWRGTNAGLALAVPTVGIYLPCYDIFRNWMEGLTAQYLPSATPYVPLVAGSLAR SLACATCYPIELARTRMQAFKETQIGKKPPGVFSTLLGVISNVKGTNPQSSLQGYRVL WSGMGAQLARDVPFSGICWSTLEPIRRKLLGLVGEESNVATVLGANFSAGFVAGSLAA AATCPLDVAKTRRRTL" gene complement(27451333..27452309) /locus_tag="TCM_015340" /note="dbxref CacaoGD:Thecc1EG015340" mRNA complement(join(27451333..27451739,27452148..27452309)) /locus_tag="TCM_015340" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2792t1" CDS complement(join(27451666..27451739,27452148..27452265)) /locus_tag="TCM_015340" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23449.1" /translation="MAVPRISLGFFAIIAIICTIISPVAQAQSTAPAPAPTSDGAAVD QGIAYILMLVALVLTYLIH" gene complement(27453593..27454701) /locus_tag="TCM_015341" /note="dbxref CacaoGD:Thecc1EG015341" mRNA complement(27453593..27454701) /locus_tag="TCM_015341" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.44 coverage" CDS complement(27454367..27454639) /locus_tag="TCM_015341" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23450.1" /translation="MEGQRARRGEKKVVGVISKSHCTTPGAVNQIRKACQNGSLSYFC LNMDSLLWGTWRKRGSLAWELSYGPPNRIGYYPPKPFEAVGRYQHS" gene complement(27454889..27459161) /locus_tag="TCM_015342" /note="dbxref CacaoGD:Thecc1EG015342" mRNA complement(join(27454889..27455889,27456334..27457450, 27457840..27458567,27459054..27459161)) /locus_tag="TCM_015342" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028743001" /inference="similar to AA sequence:Phytozome:GSVIVT01028743001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04532t00001" mRNA complement(join(27455085..27455889,27456334..27457450, 27457840..27458563,27459054..27459083)) /locus_tag="TCM_015342" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028743001" /inference="similar to AA sequence:Phytozome:GSVIVT01028743001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc379t1_C1; alternateUTRof:Thecc1EG015342t1; inference alignment:Newbler:10:TSA:cgbaB_g04532t00001" CDS complement(join(27455685..27455889,27456334..27457450, 27457840..27458554)) /locus_tag="TCM_015342" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23451.1" /db_xref="Phytozome:GSVIVT01028743001" /db_xref="TAIR:AT5G53220.3" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CUL7" /translation="MMETNLEEVEGKVRTSEIVCNGEVGNCRCCELEERSRKAEARCV ELELEAQKRKSEFEALETKFRTLEAVKLALENEIKVLKSQNHEFCPLIGHSDNENLVG HGGKAVMEGVVDLTEENDEEDKVFKLMTENSVLECEKSEAEVWKQKFKELESLTLLLR KSLVLKSAEQPFDGKKSDGNCDIVACGNKTSEAIESKDGSLVENSLNDMTAIVKAVGF MDSGSTLISPGKGAGNLQPAGTPFSDTPCKHFTSDEGDYSRLQNGKQVKRHLAFQEER SPSKQMAPSTPNGAKTASVSIIDIHDSDDEPDLAPSTNKQEYSKGNISNNNELDGTVG SENQNMTIGGQKLEEQVGSCEDNVPFISVSKRKRALNIVTSDTENDDDDNVPIGRLRR MRCEEVVSDQTSIKAKGCAVADIPPGIDNVGSTVTPRKRRLVSLRQSERKTGVKNYSS KKTSENECSKGITKTEDIEDDSSEAIGSDGESDSLNGFIVDDSAIADGDNGCSESQGG SDCNNAHSGSEDVSSGSSACSGSKDVSDDEVDFDVILSQLKRNKDRKSDWKFEGELLA AFGKDLELCMKAVCALYRQQTSGEKLWKATLLQNQRGFSKFDAHRGCTLAEFLTDGDP QGDLKKSVRELQAYDSNAVELCRDLATRYSKQLFQIYNSKEDPYFRPSDCPATN" CDS complement(join(27455685..27455889,27456334..27457450, 27457840..27458554)) /locus_tag="TCM_015342" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23452.1" /db_xref="Phytozome:GSVIVT01028743001" /db_xref="TAIR:AT5G53220.3" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CUL7" /translation="MMETNLEEVEGKVRTSEIVCNGEVGNCRCCELEERSRKAEARCV ELELEAQKRKSEFEALETKFRTLEAVKLALENEIKVLKSQNHEFCPLIGHSDNENLVG HGGKAVMEGVVDLTEENDEEDKVFKLMTENSVLECEKSEAEVWKQKFKELESLTLLLR KSLVLKSAEQPFDGKKSDGNCDIVACGNKTSEAIESKDGSLVENSLNDMTAIVKAVGF MDSGSTLISPGKGAGNLQPAGTPFSDTPCKHFTSDEGDYSRLQNGKQVKRHLAFQEER SPSKQMAPSTPNGAKTASVSIIDIHDSDDEPDLAPSTNKQEYSKGNISNNNELDGTVG SENQNMTIGGQKLEEQVGSCEDNVPFISVSKRKRALNIVTSDTENDDDDNVPIGRLRR MRCEEVVSDQTSIKAKGCAVADIPPGIDNVGSTVTPRKRRLVSLRQSERKTGVKNYSS KKTSENECSKGITKTEDIEDDSSEAIGSDGESDSLNGFIVDDSAIADGDNGCSESQGG SDCNNAHSGSEDVSSGSSACSGSKDVSDDEVDFDVILSQLKRNKDRKSDWKFEGELLA AFGKDLELCMKAVCALYRQQTSGEKLWKATLLQNQRGFSKFDAHRGCTLAEFLTDGDP QGDLKKSVRELQAYDSNAVELCRDLATRYSKQLFQIYNSKEDPYFRPSDCPATN" gene 27459326..27464297 /locus_tag="TCM_015343" /note="dbxref CacaoGD:Thecc1EG015343" mRNA join(27459326..27459741,27459802..27459899, 27460004..27460154,27460243..27460305,27460414..27460580, 27460680..27460701,27461060..27461257,27461442..27461630, 27461713..27461869,27462157..27462288,27462532..27462880, 27463001..27463052,27463729..27464297) /locus_tag="TCM_015343" /product="Folylpolyglutamate synthetase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06150.1" /inference="similar to AA sequence:Phytozome:GSVIVT01028720001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7582t5" mRNA join(27459394..27459702,27459802..27459899, 27460004..27460154,27460243..27460305,27460414..27460575, 27461066..27461257,27461442..27461541,27461738..27461869, 27462157..27462288,27462532..27462987) /locus_tag="TCM_015343" /product="Folylpolyglutamate synthetase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s06150.1" /inference="similar to AA sequence:Phytozome:GSVIVT01028720001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7582t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7582t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc378t6" CDS join(27459436..27459741,27459802..27459899, 27460004..27460154,27460243..27460305,27460414..27460580, 27460680..27460701,27461060..27461257,27461442..27461630, 27461713..27461869,27462157..27462288,27462532..27462880, 27463001..27463052,27463729..27463764) /locus_tag="TCM_015343" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Folylpolyglutamate synthetase family protein isoform 1" /protein_id="EOY23453.1" /db_xref="Phytozome:GSVIVT01028720001" /db_xref="TAIR:AT5G41480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W041" /translation="MKILKLVSQLSTLTCRKPLKKFRLESKQWFSTYTEEPELKDFIQ YIDSLKNYEKSGVPKDAGTDSDDGFDLGRMRRLMDRLGNPQSNFKARSLSFPLFLKNY SVHIAGTKGKGSTAAYLSNILRTEGYSVGCYTSPHILSIRERMSVGRLGKPVSSNTLN CLFHRIKQSLDEAIILENGCLSHFEVLTAVAFTLFAQENVDIAIIEAGLGGARDATNI ISSSELAASIITTIGEEHLAALGGSLESIAMAKAGIIKHGRPVRLESQLSLLQLILGG PFLPHIDCILRDKALSMSSPIVSASDSGIRTAIKGVSTFKGRPSQSCDLMIQLDCDFQ LSIELCDLNLSMLGTHQLQNAVTAACTALCLCNQGGCLVFVISDCLVSTQIHLIRIIE NSSNSMLDAFMDISGWKISDGSIRAGLENTCLQGRSQFLTSKEAETLGLPGATVLIDG AHTKESAKALLDTIQMTFPDSRLAIVVAMACDKDHLAFAKELLSGRQVEAVFLTESNI AGGTSRTTSASVLRDCWMQASRELGIKVLHDRIAEYRELFEDKYICSTRDLNHEILVA TENSLSDSLRFANQILRERTWNRSGIIVVTGSLHIVSLVLASLNRFYAMMDLSAVVPS ICYEGAPTTALKAGS" CDS join(27459436..27459702,27459802..27459899, 27460004..27460154,27460243..27460305,27460414..27460575, 27461066..27461257,27461442..27461541,27461738..27461869, 27462157..27462288,27462532..27462884) /locus_tag="TCM_015343" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Folylpolyglutamate synthetase family protein isoform 2" /protein_id="EOY23454.1" /db_xref="Phytozome:GSVIVT01028720001" /db_xref="TAIR:AT5G41480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W041" /translation="MKILKLVSQLSTLTCRKPLKKFRLESKQWFSTYTEEPELKDFIQ YIDSLKNYEKSGVPKDAGTDSDDGFDLGRMRRLMDRLGNPQSNFKSVHIAGTKGKGST AAYLSNILRTEGYSVGCYTSPHILSIRERMSVGRLGKPVSSNTLNCLFHRIKQSLDEA IILENGCLSHFEVLTAVAFTLFAQENVDIAIIEAGLGGARDATNIISSSELAASIITT IGEEHLAALGGSLESIAMAKAGIIKHGRPLILGGPFLPHIDCILRDKALSMSSPIVSA SDSGIRTAIKGVSTFKGRPSQSCDLMIQLDCDFQLSIELCDLNLSMLGTHQLQNAVTA ACTALCLCNQGWKISDGSIRAGLENTCLQGRSQFLTSKEAETLGLPGATVLIDGAHTK ESAKALLDTIQMTFPDSRLAIVVAMACDKDHLAFAKELLSGRQVEAVFLTESNIAGGT SRTTSASVLRDCWMQASRELGIKVLHDRIAEYRELFEDKYICSTRDLNHEILVATENS LSDSLRFANQILRERTWNRSGIIVVTGSLHIVSLVLASLNR" gene complement(27463425..27464711) /locus_tag="TCM_015344" /note="dbxref CacaoGD:Thecc1EG015344" mRNA complement(27463425..27464711) /locus_tag="TCM_015344" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.18 coverage" CDS complement(27463912..27464142) /locus_tag="TCM_015344" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23455.1" /translation="MILLQFNHQNSLPWVGTGKLDVAGAAGSPTKNGAAAKRQVGDCC LLFLGALFVHEGQSGEGSRAPFMCSPLSPLLK" gene 27469537..27472431 /locus_tag="TCM_015345" /note="dbxref CacaoGD:Thecc1EG015345" mRNA join(27469537..27470163,27470529..27471056, 27472046..27472431) /locus_tag="TCM_015345" /product="Basic helix-loop-helix DNA-binding superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006534" /inference="similar to AA sequence:ricco:30169.m006534" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7539t1" CDS join(27469762..27470163,27470529..27471056, 27472046..27472111) /locus_tag="TCM_015345" /note="dbxref ricco:30169.m006534" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein" /protein_id="EOY23456.1" /db_xref="TAIR:AT5G53210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I539" /translation="MDDTLCDFLEEPEFGETNLAGDDLFALFEGLDGLPEFPLFTPLE EMGAATQKDGEEATRLVSQKSTSSSAQQESETEPETPPKSKRQKLASSEETNPDGQQR MSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQSLEA KKQRKVYSEVLSPRIVSSPRPSPLSPRKPPLSPRINLPISPRTPQPSSPYKPRLQQGY LSPTMTSSIEPSPTSSASSVDNVNELVANSKSPIADVEVKFSGPNLLLKTVSPRIPGQ AEKIISALEDLSLEILHVNINTVDETMLNAFTIKIGIECQLSAEELAHQIQQTFC" mobile_element 27474398..27474665 /note="source:CACAO_M_E35271_F316_scaffold_5 5221 5504" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(27474680..27479693) /locus_tag="TCM_015346" /note="dbxref CacaoGD:Thecc1EG015346" mRNA complement(join(27474680..27475574,27476010..27476138, 27476251..27476799,27479664..27479693)) /locus_tag="TCM_015346" /product="WRKY DNA-binding protein 30, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005179t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s01380.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2358t1" CDS complement(join(27474944..27475574,27476010..27476138, 27476251..27476576)) /locus_tag="TCM_015346" /note="paralog of Thecc1EG005179t1" /codon_start=1 /product="WRKY DNA-binding protein 30, putative" /protein_id="EOY23457.1" /db_xref="Phytozome:POPTR_0012s01380.1" /db_xref="TAIR:AT4G11070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I540" /translation="MENMGEWEQRSLINELTQGRELARQLQVHLNVPSSHESRESLVQ KIQASYEKALSMLNYNTSLAADQPQPSGLAIRMSESPPSRSGSPRSEDSDRDFKEQEL KDASKKRKTLPRWTQLVRVTPGTALEGPLDDGFSWRKYGQKDILGAKYPRGYYRCTHR NVQGCLATKQVQRSDDDPTIFEITYRGRHTCTVASHVMPPSGPSESQEQGTCMEPQQP EQNQNQSQDLLLNFQRGLKVITEDLDIREQTYPSFPYPSSTTSNIKLENNVFSPSVID NNVVGNLSPSFISPATSGTNYFSMSPSPSGMNNTVQGNISFPSTSEPQLSTEIIQAAT SATNSPFPFGNPEFDPNFTFDNHGFFS" gene 27476906..27478032 /locus_tag="TCM_015347" /note="dbxref CacaoGD:Thecc1EG015347" mRNA 27476906..27478032 /locus_tag="TCM_015347" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage" CDS 27476922..27477215 /locus_tag="TCM_015347" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23458.1" /translation="MGFLKRSQIYQEPNIKGSDEFLCVFFFCVAKTCEINKEREKPED GGRMWVWDFKGHFPVLNEGQNGGKEGINQERKGRSLTETKVKWIILIKTGLRS" gene complement(27477301..27478931) /locus_tag="TCM_015348" /note="dbxref CacaoGD:Thecc1EG015348" mRNA complement(join(27477301..27478265,27478683..27478931)) /locus_tag="TCM_015348" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS complement(join(27478171..27478265,27478683..27478827)) /locus_tag="TCM_015348" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23459.1" /translation="MVTRYQVFQLSRGPGAQKKKNQVSGSWSHVVATRRRPGGGTGPG GPRVGTETEDESKKCGSQPTRFYRSRKKMSKSFVI" gene 27479806..27484244 /locus_tag="TCM_015349" /note="dbxref CacaoGD:Thecc1EG015349" mRNA join(27479806..27479881,27480513..27481275, 27481398..27481544,27482027..27482263,27482750..27483013, 27483302..27484244) /locus_tag="TCM_015349" /product="Sigma factor E isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006532" /inference="similar to AA sequence:ricco:30169.m006532" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11303t00001" mRNA join(27479818..27479881,27480522,27480524..27481275, 27481398..27481544,27482027..27482263,27482750..27483013, 27483302..27483865) /locus_tag="TCM_015349" /product="Sigma factor E isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006532" /inference="similar to AA sequence:ricco:30169.m006532" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7557t2; alternateUTRof:Thecc1EG015349t1; inference alignment:Newbler:10:TSA:cgbaL_g11303t00001" CDS join(27480571..27481275,27481398..27481544, 27482027..27482263,27482750..27483013,27483302..27483499) /locus_tag="TCM_015349" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006532" /codon_start=1 /product="Sigma factor E isoform 1" /protein_id="EOY23460.1" /db_xref="TAIR:AT5G24120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZNX9" /translation="MGVVSVSSSAARTPLGLSTKFSTQRCTSRRPLTVAFKADKSDNT ALVTPQEHILLPIETAKEHPKRRGKAKKDPKIVNHVFTDDGSPCTLEVDYNEAAAKLE NIYKLSPATRSSDVEEVEGKIKGRRQRRKRSKESDEKGVNSNDQIVVRNQTNRIKRLS LDNRIALKKNREEKPVVSVRRKKSSENESEKIDRLVRDYSASTDLVSLDWRKMKIPPV LPSIEHTWLFKLMQPMKALLQAKENLQKDLGRDPTEDELAEATNMSAAQVRKHLEVGQ AARNKLIKHNLRLVLFSINKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLS TYSLFWIRHAIIRSMTLSSFTRVSFGLESVRVEIQRAKLELLFELHREPTEEEIIKKV GISPERYQEVMRASKPVASLHSRHSVTQEEFINGITDIDGVGGDHRRQPALLRLALDD VLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARV DYLRRYVV" CDS join(27480571..27481275,27481398..27481544, 27482027..27482263,27482750..27483013,27483302..27483499) /locus_tag="TCM_015349" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006532" /codon_start=1 /product="Sigma factor E isoform 1" /protein_id="EOY23461.1" /db_xref="TAIR:AT5G24120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZNX9" /translation="MGVVSVSSSAARTPLGLSTKFSTQRCTSRRPLTVAFKADKSDNT ALVTPQEHILLPIETAKEHPKRRGKAKKDPKIVNHVFTDDGSPCTLEVDYNEAAAKLE NIYKLSPATRSSDVEEVEGKIKGRRQRRKRSKESDEKGVNSNDQIVVRNQTNRIKRLS LDNRIALKKNREEKPVVSVRRKKSSENESEKIDRLVRDYSASTDLVSLDWRKMKIPPV LPSIEHTWLFKLMQPMKALLQAKENLQKDLGRDPTEDELAEATNMSAAQVRKHLEVGQ AARNKLIKHNLRLVLFSINKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLS TYSLFWIRHAIIRSMTLSSFTRVSFGLESVRVEIQRAKLELLFELHREPTEEEIIKKV GISPERYQEVMRASKPVASLHSRHSVTQEEFINGITDIDGVGGDHRRQPALLRLALDD VLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARV DYLRRYVV" gene complement(27485429..27486393) /locus_tag="TCM_015351" /note="dbxref CacaoGD:Thecc1EG015351" mRNA complement(join(27485429..27485612,27486092..27486179, 27486322..27486393)) /locus_tag="TCM_015351" /product="Homeodomain-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016428t1" /inference="similar to AA sequence:TAIR:AT5G53200.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1278t3_C2" CDS complement(join(27485453..27485612,27486092..27486179, 27486322..27486376)) /locus_tag="TCM_015351" /note="paralog of Thecc1EG016428t1" /codon_start=1 /product="Homeodomain-like superfamily protein" /protein_id="EOY23462.1" /db_xref="TAIR:AT5G53200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GV05" /translation="MDRQRRRKQPKITTREYEEVSSIEWEFIKVTEQEEDLIYRMHRL VGERWDLIAGRIPGRKAEEIERFWIMQNNEGFAQRRREHKESISKNIWPLAFNGFK" mobile_element 27493642..27493706 /note="source:scaffold_5_CACTA_0580 7204 7275" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27493653..27493707 /note="source:INTACT676_F297_scaffold_3-int 1228 1282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27493660..27493710) /note="source:INTACT415F_F22_scaffold_4-int 2196 2245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27493664..27493730) /note="source:CACAO_M_E69306_F123_scaffold_9 4917 4984" /mobile_element_type="retrotransposon:LTR/Copia" gene 27496096..27498099 /locus_tag="TCM_015352" /note="dbxref CacaoGD:Thecc1EG015352" mRNA join(27496096..27496365,27496475..27496511, 27496645..27496867,27497096..27497257,27497358..27497477, 27497590..27497779,27497976..27498099) /locus_tag="TCM_015352" /product="Nodulin MtN3 family protein" /inference="alignment:exonerate-protein:2:frave:gene13106" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035405t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028713001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00701t00002" CDS join(27496329..27496365,27496475..27496511, 27496645..27496867,27497096..27497257,27497358..27497477, 27497590..27497778) /locus_tag="TCM_015352" /note="paralog of Thecc1EG035405t1" /codon_start=1 /product="Nodulin MtN3 family protein" /protein_id="EOY23463.1" /db_xref="Phytozome:GSVIVT01028713001" /db_xref="TAIR:AT5G53190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NQN5" /translation="MGERLRLGVGIMGNASSLLLYAAPILTFSRVIRKRSTEDFSCIP YIGALLNCLLYTWYGLPVVSYKWENFPLVTINGLGIILELSFIFIYFWFASTRGKIKV GVITTPVILVSCIIAIISAFVFHDHHHRKAFVGTVGLVASVAMYCAPLVAVKQVILTK SVEFMPFYLSLASFLASVLWLAYGLLSHDLLLASPNLVGCPIGVLQLVLHCKYRKRGI MEEPSKWDLEQNSQEKPKQMQFVMNENINEKELKNTA" gene 27499716..27501308 /locus_tag="TCM_015353" /note="dbxref CacaoGD:Thecc1EG015353" mRNA join(27499716..27500258,27500376..27500627, 27500806..27501308) /locus_tag="TCM_015353" /product="General transcription factor IIF subunit 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s02280.1" /inference="similar to AA sequence:Phytozome:GSVIVT01028702001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc4039t1" CDS join(27499902..27500258,27500376..27500627, 27500806..27501075) /locus_tag="TCM_015353" /codon_start=1 /product="General transcription factor IIF subunit 1" /protein_id="EOY23464.1" /db_xref="Phytozome:GSVIVT01028702001" /db_xref="TAIR:AT5G24130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A3A575" /translation="MVKLASARESRTYGPRLSRSRAECVNAGLYLFATVVLICGFAAE FSWEPRSGLVLMLIALALIIFVNLHDLLAHLAGIDYRFPLMGFDTQLALVEFAVPVVQ VLGSLLFFVGILFFFIQAEKGYGYFKLEKHALGLLIAGPVFWVLGSIHNSCQIYERAD GHVQILQQSVLIPFLIGSVLLMVGSILNSHEQAGISHHGLELLGRTWVRLGICGSLMF FIGGLTNVVKVFKMQQINGLRLEKLRGGAQDRLIQGRERHVPLIIEEPRRKMLVEEVN ATAAASTPYKDVLLGR" gene 27502484..27508499 /locus_tag="TCM_015354" /note="dbxref CacaoGD:Thecc1EG015354" mRNA join(27502484..27503212,27503308..27503517, 27503690..27503752,27505383..27505445,27505536..27505609, 27505944..27506039,27506301..27506358,27506679..27506783, 27506878..27506959,27507237..27507349,27507754..27508499) /locus_tag="TCM_015354" /product="Polypyrimidine tract-binding protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028703001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018589t1" /inference="similar to AA sequence:ricco:30169.m006527" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02403t00002" mRNA join(27502743..27503212,27503308..27503517, 27505383..27505445,27505536..27505609,27505944..27506039, 27506301..27506358,27506679..27506783,27506878..27506959, 27507237..27507349,27507754..27508489) /locus_tag="TCM_015354" /product="Polypyrimidine tract-binding protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028703001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018589t1" /inference="similar to AA sequence:ricco:30169.m006527" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7836t5; inference alignment:Newbler:10:TSA:cgbaL_g02403t00002; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc476t6" CDS join(27503027..27503212,27503308..27503517, 27503690..27503752,27505383..27505445,27505536..27505609, 27505944..27506039,27506301..27506358,27506679..27506783, 27506878..27506959,27507237..27507349,27507754..27508095) /locus_tag="TCM_015354" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006527; paralog of Thecc1EG018589t1" /codon_start=1 /product="Polypyrimidine tract-binding protein isoform 1" /protein_id="EOY23465.1" /db_xref="TAIR:AT5G53180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGL9" /translation="MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKV VNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN KTTADVAGNVLLVTIEGQDARLVSIDVLHLDHVKGNISNGSLVHREKEHTCVFSAFGF VHKITTFEKTAGFQALVQFSDAETATSAKNALDGRIIPRYLLSENIAPCTLRITYSAH TDLSVKFQSHRSRDYTNPYLPVAPSAIDGSGQFSLGLDGKKLEPESNVLLASIENMQY AVTLDVLHMVFSAFGPVQKIAMFDKNGGVQALIQYPDVQTAVVAKEALEGHSIYDGGF CKLHISYSRHTDLSIKVNNDRSRDYTIPNPAMVNPQPSILGQQPVQTVGAPGAHQYNG TQYAPPHLQPSAGWASGVPAVPQSAPGQMTSYPYMPPASMPQMTPAGMMQMPAHSGVP PAGAVPPYRPNPM" CDS join(27503027..27503212,27503308..27503517, 27505383..27505445,27505536..27505609,27505944..27506039, 27506301..27506358,27506679..27506783,27506878..27506959, 27507237..27507349,27507754..27508095) /locus_tag="TCM_015354" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006527; paralog of Thecc1EG018589t1" /codon_start=1 /product="Polypyrimidine tract-binding protein isoform 2" /protein_id="EOY23466.1" /db_xref="TAIR:AT5G53180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGL9" /translation="MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKV VNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN KTTADVAGNVLLVTIEGQDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD AETATSAKNALDGRIIPRYLLSENIAPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP VAPSAIDGSGQFSLGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA MFDKNGGVQALIQYPDVQTAVVAKEALEGHSIYDGGFCKLHISYSRHTDLSIKVNNDR SRDYTIPNPAMVNPQPSILGQQPVQTVGAPGAHQYNGTQYAPPHLQPSAGWASGVPAV PQSAPGQMTSYPYMPPASMPQMTPAGMMQMPAHSGVPPAGAVPPYRPNPM" misc_feature join(27503493..27503517,27503690..27504517) /locus_tag="TCM_015354" /note="Gene fragment of Thecc1EG015354t1; dbxref gnl|CacaoGD|Thecc1EG015354t1; quality class is mediumpartial-partof is thecc1eg015354t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc476t5; dbxref CacaoGD:Thecc1EG015355t1" mobile_element complement(27509354..27509426) /note="source:scaffold_5_CACTA_0612 6941 7023" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27509481..27509566) /note="source:scaffold_5_CACTA_0612 6939 7023" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27509588..27509701) /note="source:scaffold_5_CACTA_0612 6916 7023" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27509696..27509781) /note="source:scaffold_5_CACTA_0612 6939 7023" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27509803..27509913) /note="source:scaffold_5_CACTA_0612 6916 7023" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27510009..27510125) /note="source:scaffold_5_CACTA_0612 6905 7021" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27510657..27512253 /note="source:INTACT532_F84_scaffold_2-int 2273 3872" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27512254..27512294) /note="source:INTACT799_F10_scaffold_1-int 689 729" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27512268..27512403 /note="source:CACAO_Mutator_E39_scaffold_1 10896 11030" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(27512301..27512646) /note="source:INTACT72F_F343_scaffold_2-int 216 636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27515868..27516106) /note="source:INTACT1306F_F379_scaffold_7-int 4740 4978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27517319..27522359) /note="source:INTACT60_F127_scaffold_9-int 3983 9013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27523421..27524827 /note="source:INTACT52F_F339_scaffold_1-int 9267 10684" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27524221..27524932 /locus_tag="TCM_015357" /note="dbxref CacaoGD:Thecc1EG015357" mRNA join(27524221..27524292,27524362..27524932) /locus_tag="TCM_015357" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage" CDS 27524390..27524920 /locus_tag="TCM_015357" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23467.1" /translation="MGVLATNSRGARTPPSPGCPKNWTTRLFKSTCNPQRERRRRKNQ KTPAVSHRKRTKKQKKQAKKREKKKRERGERSAKEKERKKKPTGRRRRRRKKGRKKKK KKEKGDPRGERREREGERKKERRSQREKKEKEKERKEEEKEKREGGPAGREKKRKRKR KKEKERKERKKERKGK" gene 27524516..27540147 /locus_tag="TCM_015358" /note="dbxref CacaoGD:Thecc1EG015358" mRNA join(27524516..27525011,27528561..27529436, 27529524..27529677,27529916..27530008,27530199..27530284, 27530433..27530556,27530929..27531048,27531522..27531572, 27531763..27531824,27531965..27532022,27535755..27535880, 27535957..27536037,27536446..27536575,27536671..27536819, 27537233..27537514,27537584..27537673,27537749..27537802, 27538108..27538550) /locus_tag="TCM_015358" /product="Cell division protease ftsH isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028703001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037298t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s02230.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc696t19" mobile_element 27525089..27526202 /note="source:scaffold_5_CACTA_0584 8380 9500" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27526203..27527909 /note="source:INTACT1608F_F65_scaffold_10-int 1562 3238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27527618..27527968) /note="source:scaffold_5_CACTA_0612 6974 7298" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27528102..27528167) /note="source:scaffold_5_CACTA_0612 12600 12669" /mobile_element_type="transposon:TIR/CACTA" mRNA join(27528590..27529436,27529524..27529677, 27529916..27530008,27530199..27530284,27530433..27530556, 27530929..27531048,27531522..27531572,27531763..27531824, 27531965..27532022,27535755..27535880,27535957..27536037, 27536446..27536575,27536671..27536819,27537233..27537514, 27537584..27537673,27537749..27537802,27538108..27539531, 27540013..27540147) /locus_tag="TCM_015358" /product="Cell division protease ftsH isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037298t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s02230.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc718t12; alternateUTRof:Thecc1EG015358t1" mRNA join(27528613..27529436,27529524..27529677, 27529916..27530008,27530199..27530284,27530433..27530556, 27530929..27531048,27531522..27531572,27531763..27531824, 27531965..27532022,27535755..27535880,27535957..27536037, 27536446..27536575,27536713..27537010) /locus_tag="TCM_015358" /product="Cell division protease ftsH isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028703001" /inference="similar to AA sequence:ricco:30169.m006526" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc714t5; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc696t19" CDS join(27528835..27529436,27529524..27529677, 27529916..27530008,27530199..27530284,27530433..27530556, 27530929..27531048,27531522..27531572,27531763..27531824, 27531965..27532022,27535755..27535880,27535957..27536037, 27536446..27536575,27536671..27536819,27537233..27537514, 27537584..27537673,27537749..27537802,27538108..27538260) /locus_tag="TCM_015358" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037298t2" /codon_start=1 /product="Cell division protease ftsH isoform 1" /protein_id="EOY23468.1" /db_xref="Phytozome:POPTR_0015s02230.1" /db_xref="TAIR:AT5G53170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIL2" /translation="MTVSLQASLLCNPSPSPFLPKRRFHRCYFLSFNPSSLLKLSRPS GTFLNSRFYSRPFLTPCALHPENVNSESKLDTHVEDSKALVSDFERPTIDGLENESEG NEVNNNGGETENVAESEGQNDKLVENEGAKSKIPAMVFLMGVWAMMRNGLERLAALDW FSWWPFWRQEKRLDRLIAEADANPKDAAKESALLAELNKHSPESVIKRFEQRDHAVDS KGVAEYLRALVVTNAIAEYLPDEQTGKPSSLPTLLQELKQRASGNMDEPFLSPGISEK QPLHVVMVDPKVSNKSRFAQELISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGV GSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLP KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKK APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPMSDDVDVKAIARGTPGFNGADLAN LVNIAAIKAAVEGADKLTAAQLEYAKDRILMGTERKTMFLSEESKKLTAYHESGHAIV AFNTEGADPIHKATIMPRGSALGMVTQLPSSDETSISKKQLLARLDVCMGGRVAEELI FGRDHITTGASSDLNTATELAQYMVSSCGMSDAIGPVHIKERPSSEMQSRIDAEVVKL LREAYDRVKALLKKQENALHALANVLLEYETLSAEEIKRILLPHREGGLPEQQEQQEE GELVLA" CDS join(27528835..27529436,27529524..27529677, 27529916..27530008,27530199..27530284,27530433..27530556, 27530929..27531048,27531522..27531572,27531763..27531824, 27531965..27532022,27535755..27535880,27535957..27536037, 27536446..27536575,27536671..27536819,27537233..27537514, 27537584..27537673,27537749..27537802,27538108..27538260) /locus_tag="TCM_015358" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037298t2" /codon_start=1 /product="Cell division protease ftsH isoform 1" /protein_id="EOY23469.1" /db_xref="Phytozome:POPTR_0015s02230.1" /db_xref="TAIR:AT5G53170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIL2" /translation="MTVSLQASLLCNPSPSPFLPKRRFHRCYFLSFNPSSLLKLSRPS GTFLNSRFYSRPFLTPCALHPENVNSESKLDTHVEDSKALVSDFERPTIDGLENESEG NEVNNNGGETENVAESEGQNDKLVENEGAKSKIPAMVFLMGVWAMMRNGLERLAALDW FSWWPFWRQEKRLDRLIAEADANPKDAAKESALLAELNKHSPESVIKRFEQRDHAVDS KGVAEYLRALVVTNAIAEYLPDEQTGKPSSLPTLLQELKQRASGNMDEPFLSPGISEK QPLHVVMVDPKVSNKSRFAQELISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGV GSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLP KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKK APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPMSDDVDVKAIARGTPGFNGADLAN LVNIAAIKAAVEGADKLTAAQLEYAKDRILMGTERKTMFLSEESKKLTAYHESGHAIV AFNTEGADPIHKATIMPRGSALGMVTQLPSSDETSISKKQLLARLDVCMGGRVAEELI FGRDHITTGASSDLNTATELAQYMVSSCGMSDAIGPVHIKERPSSEMQSRIDAEVVKL LREAYDRVKALLKKQENALHALANVLLEYETLSAEEIKRILLPHREGGLPEQQEQQEE GELVLA" CDS join(27528835..27529436,27529524..27529677, 27529916..27530008,27530199..27530284,27530433..27530556, 27530929..27531048,27531522..27531572,27531763..27531824, 27531965..27532022,27535755..27535880,27535957..27536037, 27536446..27536575,27536713..27536894) /locus_tag="TCM_015358" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006526" /codon_start=1 /product="Cell division protease ftsH isoform 3" /protein_id="EOY23470.1" /db_xref="TAIR:AT5G53170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIL2" /translation="MTVSLQASLLCNPSPSPFLPKRRFHRCYFLSFNPSSLLKLSRPS GTFLNSRFYSRPFLTPCALHPENVNSESKLDTHVEDSKALVSDFERPTIDGLENESEG NEVNNNGGETENVAESEGQNDKLVENEGAKSKIPAMVFLMGVWAMMRNGLERLAALDW FSWWPFWRQEKRLDRLIAEADANPKDAAKESALLAELNKHSPESVIKRFEQRDHAVDS KGVAEYLRALVVTNAIAEYLPDEQTGKPSSLPTLLQELKQRASGNMDEPFLSPGISEK QPLHVVMVDPKVSNKSRFAQELISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGV GSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLP KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKK APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPMSDDVDVKAIARGTPGFNGAVEGA DKLTAAQLEYAKDRILMGTERKTMFLSEESKKVLKFFIKHFRVESKLWFAWNVLNH" mobile_element 27532050..27532803 /note="source:CACAO_on_SS_E135_scaffold_10 8197 8985" /mobile_element_type="transposon:TIR/Mutator" mobile_element 27532774..27532897 /note="source:INTACT749_F1_scaffold_1-int 1517 1623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27532893..27535327 /note="source:INTACT173_F1_scaffold_1-int 2958 5386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27535426..27535707 /note="source:CACAO_on_SS_E135_scaffold_10 8216 8561" /mobile_element_type="transposon:TIR/Mutator" gene complement(27538770..27543391) /locus_tag="TCM_015359" /note="dbxref CacaoGD:Thecc1EG015359" mRNA complement(join(27538770..27539531,27540013..27540228, 27541451..27541638,27541724..27541880,27543078..27543391)) /locus_tag="TCM_015359" /product="Regulatory components of ABA receptor 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016450t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028704001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01240t00001" mRNA complement(join(27538834..27539531,27540013..27540228, 27541451..27541956)) /locus_tag="TCM_015359" /product="Regulatory components of ABA receptor 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016450t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028704001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7889t5; inference alignment:Newbler:10:TSA:cgbaP1_g01240t00001" CDS complement(join(27539316..27539531,27540013..27540228, 27541451..27541638,27541724..27541868)) /locus_tag="TCM_015359" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016450t1" /codon_start=1 /product="Regulatory components of ABA receptor 3 isoform 1" /protein_id="EOY23471.1" /db_xref="Phytozome:GSVIVT01028704001" /db_xref="TAIR:AT5G53160.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGM1" /translation="MIGRLRRGRSQVASLSFYGGGSQAFLLLLSLEINQLRQFLEASS ENRSERSERVWIDTKRKEEKMNGNSNGFGSGAAVVASEYVRRHHRHEIGENQCSSALV KHIKAPVPLVWSLVRRFDQPQKYKPFVSRCVVQGNLEIGSLREVDVKSGLPATTSTER LELLDDDEHILSIRIVGGDHRLKNYSSISSLHPEIIDGRPGTLVIESFVVDVPEGNTK DETCYFVEALIKCNLKSLADVSEGLAVQDRTEPIHL" CDS complement(join(27539316..27539531,27540013..27540228, 27541451..27541591)) /locus_tag="TCM_015359" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016450t1" /codon_start=1 /product="Regulatory components of ABA receptor 3 isoform 2" /protein_id="EOY23472.1" /db_xref="Phytozome:GSVIVT01028704001" /db_xref="TAIR:AT5G53160.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGM1" /translation="MNGNSNGFGSGAAVVASEYVRRHHRHEIGENQCSSALVKHIKAP VPLVWSLVRRFDQPQKYKPFVSRCVVQGNLEIGSLREVDVKSGLPATTSTERLELLDD DEHILSIRIVGGDHRLKNYSSISSLHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYF VEALIKCNLKSLADVSEGLAVQDRTEPIHL" mobile_element complement(27543301..27544024) /note="source:INTACT687_F13_scaffold_3-int 1297 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27544717..27544885) /note="source:scaffold_7_CACTA_0795 2861 3027" /mobile_element_type="transposon:TIR/CACTA" gene complement(27550144..27559822) /locus_tag="TCM_015361" /note="dbxref CacaoGD:Thecc1EG015361" mRNA complement(join(27550144..27550999,27551142..27551282, 27551381..27551458,27551615..27551716,27551835..27551888, 27551981..27552079,27552204..27552275,27552387..27552527, 27552690..27552872,27554296..27554373,27559387..27559420, 27559598..27559822)) /locus_tag="TCM_015361" /product="Haloacid dehalogenase-like hydrolase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034935t1" /inference="similar to AA sequence:ricco:30169.m006524" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3947t1" CDS complement(join(27550844..27550999,27551142..27551282, 27551381..27551458,27551615..27551716,27551835..27551888, 27551981..27552079,27552204..27552275,27552387..27552527, 27552690..27552872,27554296..27554373,27559387..27559420, 27559598..27559716)) /locus_tag="TCM_015361" /note="dbxref ricco:30169.m006524; paralog of Thecc1EG034935t1" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein" /protein_id="EOY23473.1" /db_xref="TAIR:AT1G35910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I555" /translation="MLGSFMGNSHFEDKFKELPGSKSTKTFFSLGFDAASLHALVVEV CAAPQLREVFNRTVTFLKPSILEKARYHAFVTLMIKRNLAKFNETMGFQISHSNKQKV KPFFRPKNDDNDGTINGSVKGIELSPPDVAGYDSWLVKHPSALNSFDSIMKEAKGKKV VVFLDYDGTLSPIVEDPNKAFMSAEMRAAVREVAKYFPTSIISGRSRDKVKQFVQLSN VYYAGSHGMDIMAPPRAVTSCDKKGNEGAFQPAKLFLPAIQEISVVLVDKIRGIQGAR IEDNRFCISVHYRQVPPEDHEILKEKVKSLVENRPEFRLTEGKMVLEVRPSIDWNKGD ALNYLLDTLGFSNAKDVLPLYIGDDRTDEDAFKVIAARREGFPIIVSSTPKDTIAWYS LRDPPEVLAFLLRLAKWRKSEIPFFK" mobile_element 27556568..27556681 /note="source:INTACT433_F212_scaffold_1-int 3049 3161" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(27560459..27565646) /locus_tag="TCM_015362" /note="dbxref CacaoGD:Thecc1EG015362" mRNA complement(join(27560459..27563222,27564117..27564202, 27565512..27565643)) /locus_tag="TCM_015362" /product="Heat shock protein binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006523" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008764t2" /inference="similar to AA sequence:ricco:30169.m006523" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1398t5" mRNA complement(join(27560507..27563222,27565512..27565646)) /locus_tag="TCM_015362" /product="Heat shock protein binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006523" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008764t2" /inference="similar to AA sequence:ricco:30169.m006523" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1398t7; alternateUTRof:Thecc1EG015362t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1398t5" CDS complement(27560853..27563084) /locus_tag="TCM_015362" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006523; paralog of Thecc1EG008764t2" /codon_start=1 /product="Heat shock protein binding protein, putative isoform 1" /protein_id="EOY23474.1" /db_xref="TAIR:AT5G53150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIK9" /translation="MECNKDEAFRAKEIAERKVTEKDYAGAKKFALKAQNLYPGLDGV AQMLTTLDVYISAENKVSGEADWYGMLGVNPSADDEVVRKQYRKLALMLHPDKNKSVG ADGAFKLVSEAWSLLSDKAKRLAYNQKINVRGTQQKFPAQSGVSSIPPRANGSRSSSS TVTSNARTQNSNSRVGQTSFPSPSNKKPATFWTVCNRCKTQYEYLRIYLNHTLLCPNC HEAFLALEKAPPPNVYRSSNWCSQQQQASGHHATNNNQFNYGKNSSSSQSSERDGLAG HGSSINASFQGGPFSGAAGVSSTVAPPSTSAEAASVVRNVQEKVKREREEALKAERLL KKRKEDIRVNGYVGKMTTQTTMGNGPCLGTGVFGVGSNYGYSGNNNKPISERELSLFE IRNMLVDKARIVIRKKLKEWTSVTEAQSADKVKEKIREKENRKQRSTANGDARDTNKE YQGKHSPPAASPDDSDTGIALYSMNVPDPDFHNFDLDRSESSFGDDQVWAAYDDDDGM PRFYARIHKVISLKPFKMKISWLNSRSSSEFGLLDWIGSGFSKTCGEFRSGRHEISET LNAFSHKVQWSKGNRGVIRIFPSKGDVWALYRNWSPDWNEQTPDELIHKYDMVEVLND YNEEQGISVIPLIKVAGFRTVFHKHMDPKEVRRIPKEEMFRFSHQVPNYLLTGQEAHN APMGCRELDPAATPLELLQVINEAAEAPMEDNSRKTDKETFKSAREGEADELVEISSK SQE" CDS complement(27560853..27563084) /locus_tag="TCM_015362" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006523; paralog of Thecc1EG008764t2" /codon_start=1 /product="Heat shock protein binding protein, putative isoform 1" /protein_id="EOY23475.1" /db_xref="TAIR:AT5G53150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIK9" /translation="MECNKDEAFRAKEIAERKVTEKDYAGAKKFALKAQNLYPGLDGV AQMLTTLDVYISAENKVSGEADWYGMLGVNPSADDEVVRKQYRKLALMLHPDKNKSVG ADGAFKLVSEAWSLLSDKAKRLAYNQKINVRGTQQKFPAQSGVSSIPPRANGSRSSSS TVTSNARTQNSNSRVGQTSFPSPSNKKPATFWTVCNRCKTQYEYLRIYLNHTLLCPNC HEAFLALEKAPPPNVYRSSNWCSQQQQASGHHATNNNQFNYGKNSSSSQSSERDGLAG HGSSINASFQGGPFSGAAGVSSTVAPPSTSAEAASVVRNVQEKVKREREEALKAERLL KKRKEDIRVNGYVGKMTTQTTMGNGPCLGTGVFGVGSNYGYSGNNNKPISERELSLFE IRNMLVDKARIVIRKKLKEWTSVTEAQSADKVKEKIREKENRKQRSTANGDARDTNKE YQGKHSPPAASPDDSDTGIALYSMNVPDPDFHNFDLDRSESSFGDDQVWAAYDDDDGM PRFYARIHKVISLKPFKMKISWLNSRSSSEFGLLDWIGSGFSKTCGEFRSGRHEISET LNAFSHKVQWSKGNRGVIRIFPSKGDVWALYRNWSPDWNEQTPDELIHKYDMVEVLND YNEEQGISVIPLIKVAGFRTVFHKHMDPKEVRRIPKEEMFRFSHQVPNYLLTGQEAHN APMGCRELDPAATPLELLQVINEAAEAPMEDNSRKTDKETFKSAREGEADELVEISSK SQE" gene complement(27567100..27571847) /locus_tag="TCM_015363" /note="dbxref CacaoGD:Thecc1EG015363" mRNA complement(join(27567100..27567526,27567823..27567900, 27568441..27568532,27568667..27568753,27569185..27569343, 27569568..27569666,27570284..27570411,27570769..27571092, 27571429..27571847)) /locus_tag="TCM_015363" /product="Phosphatase 2C 76 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028710001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036863t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028710001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7688t1; inference alignment:Newbler:10:TSA:cgbaP2_g01420t00001" mRNA complement(join(27567101..27567526,27567823..27567897, 27568441..27568532,27568667..27568753,27569185..27569343, 27569568..27569666,27570284..27570418,27571428..27571646)) /locus_tag="TCM_015363" /product="Phosphatase 2C family protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028710001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036863t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028710001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00956t00001_C1; inference alignment:Newbler:10:TSA:cgbaP2_g01420t00001" mRNA complement(join(27567102..27567526,27567823..27567897, 27568441..27568532,27568667..27568753,27569185..27569343, 27569568..27569666,27570284..27570411,27570769..27571092, 27571429..27571773)) /locus_tag="TCM_015363" /product="Phosphatase 2C 76 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028710001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036863t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028710001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01420t00001; inference alignment:Newbler:10:TSA:cgbaP2_g01420t00001" mRNA complement(join(27567105..27567528,27567815..27567897, 27568441..27568532,27568667..27568753,27569185..27569343, 27569568..27569666,27570284..27570411,27570769..27571088, 27571429..27571454)) /locus_tag="TCM_015363" /product="Phosphatase 2C 76 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028710001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036863t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028710001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc260t10; inference alignment:Newbler:10:TSA:cgbaP2_g01420t00001" mRNA complement(join(27567105..27567526,27567823..27567897, 27568441..27568532,27568667..27568753,27569185..27569343, 27569568..27569666,27570284..27570411,27570769..27570979, 27571429..27571453)) /locus_tag="TCM_015363" /product="Phosphatase 2C family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028710001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036863t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028710001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc911t9; inference alignment:Newbler:10:TSA:cgbaP2_g01420t00001" mRNA complement(join(27567105..27567526,27567823..27567897, 27568441..27568532,27568667..27568753,27569185..27569343, 27569568..27569666,27570284..27570411,27570769..27571173)) /locus_tag="TCM_015363" /product="Phosphatase 2C 76 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028710001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036863t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028710001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc911t4; alternateUTRof:Thecc1EG015363t1; inference alignment:Newbler:10:TSA:cgbaP2_g01420t00001" CDS complement(join(27567365..27567526,27567823..27567897, 27568441..27568532,27568667..27568753,27569185..27569343, 27569568..27569666,27570284..27570411,27570769..27571031)) /locus_tag="TCM_015363" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG036863t1" /codon_start=1 /product="Phosphatase 2C 76 isoform 1" /protein_id="EOY23476.1" /db_xref="Phytozome:GSVIVT01028710001" /db_xref="TAIR:AT5G53140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDW8" /translation="MVCNSCLRSVIVQTGHIGTLLTPKRVHLRSVGRTSHVDAGLTFW WNREFRTTAKMMVDRGATANQGPVVDMFPEKDDDGGYVSGGWKSEDGKLSCGYSSFRG KRATMEDFYDIKTSKINGQTVCMFGIFDGHGGSRAAEYLKQHLFENLMKHPQFMTDTK LAISETYQQTDVDFLDSERDTFRDDGSTASTAVLVGNHLYVANVGDSRTIISKAGKAI PLSEDHKPNRSDERQRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQ DKEIDEEFELLVLASDGLWDVVPNEDAVLLARAEEEPETAARKLTETAFTRGSADNIT CIVARFHHDKADPANPQASA" CDS complement(join(27567365..27567526,27567823..27567897, 27568441..27568532,27568667..27568753,27569185..27569343, 27569568..27569666,27570284..27570411,27570769..27571031)) /locus_tag="TCM_015363" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG036863t1" /codon_start=1 /product="Phosphatase 2C 76 isoform 1" /protein_id="EOY23480.1" /db_xref="Phytozome:GSVIVT01028710001" /db_xref="TAIR:AT5G53140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDW8" /translation="MVCNSCLRSVIVQTGHIGTLLTPKRVHLRSVGRTSHVDAGLTFW WNREFRTTAKMMVDRGATANQGPVVDMFPEKDDDGGYVSGGWKSEDGKLSCGYSSFRG KRATMEDFYDIKTSKINGQTVCMFGIFDGHGGSRAAEYLKQHLFENLMKHPQFMTDTK LAISETYQQTDVDFLDSERDTFRDDGSTASTAVLVGNHLYVANVGDSRTIISKAGKAI PLSEDHKPNRSDERQRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQ DKEIDEEFELLVLASDGLWDVVPNEDAVLLARAEEEPETAARKLTETAFTRGSADNIT CIVARFHHDKADPANPQASA" CDS complement(join(27567365..27567526,27567823..27567900, 27568441..27568532,27568667..27568753,27569185..27569343, 27569568..27569666,27570284..27570411,27570769..27571031)) /locus_tag="TCM_015363" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG036863t1" /codon_start=1 /product="Phosphatase 2C 76 isoform 4" /protein_id="EOY23479.1" /db_xref="Phytozome:GSVIVT01028710001" /db_xref="TAIR:AT5G53140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDW8" /translation="MVCNSCLRSVIVQTGHIGTLLTPKRVHLRSVGRTSHVDAGLTFW WNREFRTTAKMMVDRGATANQGPVVDMFPEKDDDGGYVSGGWKSEDGKLSCGYSSFRG KRATMEDFYDIKTSKINGQTVCMFGIFDGHGGSRAAEYLKQHLFENLMKHPQFMTDTK LAISETYQQTDVDFLDSERDTFRDDGSTASTAVLVGNHLYVANVGDSRTIISKAGKAI PLSEDHKPNRSDERQRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQ QDKEIDEEFELLVLASDGLWDVVPNEDAVLLARAEEEPETAARKLTETAFTRGSADNI TCIVARFHHDKADPANPQASA" CDS complement(join(27567365..27567526,27567823..27567897, 27568441..27568532,27568667..27568753,27569185..27569343, 27569568..27569666,27570284..27570411,27570769..27570869)) /locus_tag="TCM_015363" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG036863t1" /codon_start=1 /product="Phosphatase 2C family protein isoform 3" /protein_id="EOY23478.1" /db_xref="Phytozome:GSVIVT01028710001" /db_xref="TAIR:AT5G53140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDW8" /translation="MMVDRGATANQGPVVDMFPEKDDDGGYVSGGWKSEDGKLSCGYS SFRGKRATMEDFYDIKTSKINGQTVCMFGIFDGHGGSRAAEYLKQHLFENLMKHPQFM TDTKLAISETYQQTDVDFLDSERDTFRDDGSTASTAVLVGNHLYVANVGDSRTIISKA GKAIPLSEDHKPNRSDERQRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAE PEIQDKEIDEEFELLVLASDGLWDVVPNEDAVLLARAEEEPETAARKLTETAFTRGSA DNITCIVARFHHDKADPANPQASA" CDS complement(join(27567365..27567526,27567823..27567897, 27568441..27568532,27568667..27568753,27569185..27569343, 27569568..27569666,27570284..27570356)) /locus_tag="TCM_015363" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG036863t1" /codon_start=1 /product="Phosphatase 2C family protein isoform 6" /protein_id="EOY23481.1" /db_xref="Phytozome:GSVIVT01028710001" /db_xref="TAIR:AT5G53140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDW8" /translation="MEDFYDIKTSKINGQTVCMFGIFDGHGGSRAAEYLKQHLFENLM KHPQFMTDTKLAISETYQQTDVDFLDSERDTFRDDGSTASTAVLVGNHLYVANVGDSR TIISKAGKAIPLSEDHKPNRSDERQRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK QFVVAEPEIQDKEIDEEFELLVLASDGLWDVVPNEDAVLLARAEEEPETAARKLTETA FTRGSADNITCIVARFHHDKADPANPQASA" CDS complement(join(27567402..27567528,27567815..27567897, 27568441..27568532,27568667..27568753,27569185..27569343, 27569568..27569666,27570284..27570411,27570769..27571031)) /locus_tag="TCM_015363" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG036863t1" /codon_start=1 /product="Phosphatase 2C 76 isoform 2" /protein_id="EOY23477.1" /db_xref="Phytozome:GSVIVT01028710001" /db_xref="TAIR:AT5G53140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDW8" /translation="MVCNSCLRSVIVQTGHIGTLLTPKRVHLRSVGRTSHVDAGLTFW WNREFRTTAKMMVDRGATANQGPVVDMFPEKDDDGGYVSGGWKSEDGKLSCGYSSFRG KRATMEDFYDIKTSKINGQTVCMFGIFDGHGGSRAAEYLKQHLFENLMKHPQFMTDTK LAISETYQQTDVDFLDSERDTFRDDGSTASTAVLVGNHLYVANVGDSRTIISKAGKAI PLSEDHKPNRSDERQRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQ DKEIDEEFELLVLASDGLWDVVPNEVNVGCCFACPSRRRTRNSCSEVDRNCIYPWKCR QYNMHCSEIPP" mRNA complement(join(27567452..27567526,27567823..27567897, 27568667..27568753,27569185..27569343,27569568..27569666, 27570284..27570411,27570769..27571092,27571429..27571847)) /locus_tag="TCM_015363" /product="Phosphatase 2C 76 isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028710001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035324t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028710001" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc251t5; inference alignment:Newbler:10:TSA:cgbaP2_g01420t00001" CDS complement(join(27567893..27567897,27568667..27568753, 27569185..27569343,27569568..27569666,27570284..27570411, 27570769..27571031)) /locus_tag="TCM_015363" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG035324t1" /codon_start=1 /product="Phosphatase 2C 76 isoform 7" /protein_id="EOY23482.1" /db_xref="Phytozome:GSVIVT01028710001" /db_xref="TAIR:AT5G53140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDW8" /translation="MVCNSCLRSVIVQTGHIGTLLTPKRVHLRSVGRTSHVDAGLTFW WNREFRTTAKMMVDRGATANQGPVVDMFPEKDDDGGYVSGGWKSEDGKLSCGYSSFRG KRATMEDFYDIKTSKINGQTVCMFGIFDGHGGSRAAEYLKQHLFENLMKHPQFMTDTK LAISETYQQTDVDFLDSERDTFRDDGSTASTAVLVGNHLYVANVGDSRTIISKAGKAI PLSEDHKPNRSDERQRIENAGGVVMWAG" mobile_element complement(27572029..27572119) /note="source:scaffold_1_CACTA_0030 655 748" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27573674..27574846 /note="source:CACAO_PIF_E144_scaffold_10 1207 2390" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 27575503..27575602 /note="source:scaffold_6_CACTA_0699 12114 12213" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27575552..27575790 /note="source:INTACT383F_F354_scaffold_3-int 903 1141" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 27576496..27585043 /locus_tag="TCM_015364" /note="dbxref CacaoGD:Thecc1EG015364" mRNA join(27576496..27576944,27577634..27577750, 27578213..27578780,27579244..27579456,27580462..27580745, 27581795..27581906,27582458..27582694,27582841..27583539, 27583758..27583847,27584772..27585043) /locus_tag="TCM_015364" /product="Cyclic nucleotide gated channel 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005162t1" /inference="similar to AA sequence:ricco:30169.m006518" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc99t42" mRNA join(27576610..27576944,27577635..27577750, 27578213..27578780,27579244..27579456,27580462..27580745, 27581795..27581906,27582458..27582694,27582841..27583893) /locus_tag="TCM_015364" /product="Cyclic nucleotide gated channel 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005162t1" /inference="similar to AA sequence:ricco:30169.m006518" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc99t39; alternateUTRof:Thecc1EG015364t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc99t42" CDS join(27577722..27577750,27578213..27578780, 27579244..27579456,27580462..27580745,27581795..27581906, 27582458..27582694,27582841..27583539) /locus_tag="TCM_015364" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006518; paralog of Thecc1EG005162t1" /codon_start=1 /product="Cyclic nucleotide gated channel 1 isoform 1" /protein_id="EOY23483.1" /db_xref="TAIR:AT5G53130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65717" /translation="MSYPPEKFVRFQDWNSEKSTEAQYSDNKGINSGRVRFAINSFSE KFQRGVESGSERIKGIRKSLRSCSFNRVVAKGFGSSKKVLDPQGSFLQRWNKIFVLSC IIAVSIDPLFFYIPVINDDKKCLALDEKMEATASVLRSFTDIFYVIHIVFQFRTGFIA PSSRVFGRGVLVEDSWAIAKRYLKSYFVIDILAVLPLPQVVILIIIPHMRGLRSLNTK NLLKFVVFFQYVPRFFRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGAFW YLFSIEREYTCWKDACRNSSTGCPPDSLSCPGDSSVSAFLNQSCPIQTPNTTLFNFGI FLDALQSGVVESKDFPEKFFYCFWWGLQNLSSLGQNLETSTYVWEICFAVFMSISGLV LFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRERIRRYEQYRWQET RGVDEENLLRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEE SYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEYLGAGDFCGEELLTWALDPHS SSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAA CFIQAAWRRYSKKKLEESLREEENRLQDALANAGGSSPSLGATIYASRFAANALRALR RNRTRKARLPERVPPMLLQKPAEPDFTAEEH" CDS join(27577722..27577750,27578213..27578780, 27579244..27579456,27580462..27580745,27581795..27581906, 27582458..27582694,27582841..27583539) /locus_tag="TCM_015364" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006518; paralog of Thecc1EG005162t1" /codon_start=1 /product="Cyclic nucleotide gated channel 1 isoform 1" /protein_id="EOY23484.1" /db_xref="TAIR:AT5G53130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65717" /translation="MSYPPEKFVRFQDWNSEKSTEAQYSDNKGINSGRVRFAINSFSE KFQRGVESGSERIKGIRKSLRSCSFNRVVAKGFGSSKKVLDPQGSFLQRWNKIFVLSC IIAVSIDPLFFYIPVINDDKKCLALDEKMEATASVLRSFTDIFYVIHIVFQFRTGFIA PSSRVFGRGVLVEDSWAIAKRYLKSYFVIDILAVLPLPQVVILIIIPHMRGLRSLNTK NLLKFVVFFQYVPRFFRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGAFW YLFSIEREYTCWKDACRNSSTGCPPDSLSCPGDSSVSAFLNQSCPIQTPNTTLFNFGI FLDALQSGVVESKDFPEKFFYCFWWGLQNLSSLGQNLETSTYVWEICFAVFMSISGLV LFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRERIRRYEQYRWQET RGVDEENLLRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEE SYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEYLGAGDFCGEELLTWALDPHS SSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAA CFIQAAWRRYSKKKLEESLREEENRLQDALANAGGSSPSLGATIYASRFAANALRALR RNRTRKARLPERVPPMLLQKPAEPDFTAEEH" mRNA join(27578757..27579456,27580462..27580745, 27581795..27581906,27582458..27582694,27582841..27583895) /locus_tag="TCM_015364" /product="Cyclic nucleotide gated channel 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005162t1" /inference="similar to AA sequence:ricco:30169.m006518" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc520t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc99t42" CDS join(27579271..27579456,27580462..27580745, 27581795..27581906,27582458..27582694,27582841..27583539) /locus_tag="TCM_015364" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006518; paralog of Thecc1EG005162t1" /codon_start=1 /product="Cyclic nucleotide gated channel 1 isoform 3" /protein_id="EOY23485.1" /db_xref="TAIR:AT5G53130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65717" /translation="MRGLRSLNTKNLLKFVVFFQYVPRFFRIYPLYKEVTRTSGILTE TAWAGAAFNLFLYMLASHVLGAFWYLFSIEREYTCWKDACRNSSTGCPPDSLSCPGDS SVSAFLNQSCPIQTPNTTLFNFGIFLDALQSGVVESKDFPEKFFYCFWWGLQNLSSLG QNLETSTYVWEICFAVFMSISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWM SHRLLPENLRERIRRYEQYRWQETRGVDEENLLRNLPKDLRRDIKRHLCLALLMRVPM FEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFF NSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALTEVEAFALMADDLKFVASQF RRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLREEENRLQDALANAG GSSPSLGATIYASRFAANALRALRRNRTRKARLPERVPPMLLQKPAEPDFTAEEH" mobile_element complement(27584025..27584736) /note="source:scaffold_8_CACTA_0855 1771 2311" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27584909..27584962 /note="source:CACAO_M_S_E52697_F28_scaffold_5 6042 6092" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27585400..27590315) /locus_tag="TCM_015365" /note="dbxref CacaoGD:Thecc1EG015365" mRNA complement(join(27585400..27586209,27586698..27588347, 27589057..27589481,27589735..27589820,27590161..27590311)) /locus_tag="TCM_015365" /product="Pyruvate kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400034059" /inference="similar to AA sequence:ricco:30169.m006517" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc781t4" mRNA complement(join(27585843..27586209,27586698..27588347, 27589057..27589481,27589735..27589820,27590157..27590315)) /locus_tag="TCM_015365" /product="Pyruvate kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400034059" /inference="similar to AA sequence:ricco:30169.m006517" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc760t4; alternateUTRof:Thecc1EG015365t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc781t4" CDS complement(join(27586074..27586209,27586698..27588347, 27589057..27589481,27589735..27589779)) /locus_tag="TCM_015365" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006517" /codon_start=1 /product="Pyruvate kinase family protein isoform 1" /protein_id="EOY23486.1" /db_xref="TAIR:AT3G49160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6F4" /translation="MTASIVTNHKAIPRHAIHTADVSELGLCTLGGKFAYLPCRLNVR QSAQMVQLLAKFRNTLARKTTAFAIPNENNEVERSGSHACSDDQVLMPLENYNSSGHL EGEAVDSLSKSEAGFFQRVEHLGNQARVLDKLRAVYLHVLASEQWNASRLKLSHKNYM ESATNLIHYLALKSLDTEALKDDLALISLLNLEMVNSSVLASLTTGIQLLENLQLNSV RANGNVSAEICMQEKLDQQNKGNFMINAMRKKAFLNRELLLGPLQDSRLTHIMTTVGE EALESETLITNLIKTGTSIIRINCAHGNPQLWSEIIRRVKQSSQMLESPCRILMDLAG PKLRTDNLKPGPCVVKISPKKNASGNVIFPAQVWLSHKGAGPPPPHLSPDAVLFIDDQ EFLSEVKVGDTSRFFDARGKKRMLKISRVFHIFSGTGFMAECSRTAYVSSGTELLIKR KKGRFLVGQVVDVPARESFIRLRVGDLLIISRDGKSDQDNSYGHTSRAYRIACSSGYL FDAVKPGERIAFDDGKIWGVIKGTSSSEIVVSITHAGPRGTKLGSQKSINIPDSNIRY EGLTSKDLVDLEFVASHADMVGVSFVRDTRDVIVLRQELEKRKLQNLGIVLKIETKSG FEKLPLLLLEAMKSSNPLGVMIARGDLAVECGWERLADIQEEILSVSGAAHIPVIWAT QVLESLVKSGIPTRAEITDVANGRRASCIMLNKGRHIVQAVSTLDSILRANSKEMKAE RKPLVLSSHLF" CDS complement(join(27586074..27586209,27586698..27588347, 27589057..27589481,27589735..27589779)) /locus_tag="TCM_015365" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006517" /codon_start=1 /product="Pyruvate kinase family protein isoform 1" /protein_id="EOY23487.1" /db_xref="TAIR:AT3G49160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6F4" /translation="MTASIVTNHKAIPRHAIHTADVSELGLCTLGGKFAYLPCRLNVR QSAQMVQLLAKFRNTLARKTTAFAIPNENNEVERSGSHACSDDQVLMPLENYNSSGHL EGEAVDSLSKSEAGFFQRVEHLGNQARVLDKLRAVYLHVLASEQWNASRLKLSHKNYM ESATNLIHYLALKSLDTEALKDDLALISLLNLEMVNSSVLASLTTGIQLLENLQLNSV RANGNVSAEICMQEKLDQQNKGNFMINAMRKKAFLNRELLLGPLQDSRLTHIMTTVGE EALESETLITNLIKTGTSIIRINCAHGNPQLWSEIIRRVKQSSQMLESPCRILMDLAG PKLRTDNLKPGPCVVKISPKKNASGNVIFPAQVWLSHKGAGPPPPHLSPDAVLFIDDQ EFLSEVKVGDTSRFFDARGKKRMLKISRVFHIFSGTGFMAECSRTAYVSSGTELLIKR KKGRFLVGQVVDVPARESFIRLRVGDLLIISRDGKSDQDNSYGHTSRAYRIACSSGYL FDAVKPGERIAFDDGKIWGVIKGTSSSEIVVSITHAGPRGTKLGSQKSINIPDSNIRY EGLTSKDLVDLEFVASHADMVGVSFVRDTRDVIVLRQELEKRKLQNLGIVLKIETKSG FEKLPLLLLEAMKSSNPLGVMIARGDLAVECGWERLADIQEEILSVSGAAHIPVIWAT QVLESLVKSGIPTRAEITDVANGRRASCIMLNKGRHIVQAVSTLDSILRANSKEMKAE RKPLVLSSHLF" gene complement(27591112..27596861) /locus_tag="TCM_015367" /note="dbxref CacaoGD:Thecc1EG015367" mRNA complement(join(27591112..27591325,27591525..27591627, 27591714..27591820,27592380..27592509,27592742..27592937, 27593229..27593300,27593422..27593494,27593595..27593699, 27594115..27594237,27594410..27594486,27594796..27594840, 27594944..27595176,27596510..27596861)) /locus_tag="TCM_015367" /product="Spermidine synthase 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010253t1" /inference="similar to AA sequence:ricco:30169.m006516" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00267t00006" mRNA complement(join(27591147..27591627,27591714..27591820, 27592380..27592509,27592742..27592937,27593229..27593300, 27593422..27593494,27593595..27593699,27594115..27594237, 27594410..27594486,27594796..27594840,27594956..27595176, 27596510..27596688)) /locus_tag="TCM_015367" /product="Spermidine synthase 3 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30169.m006516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010253t1" /inference="similar to AA sequence:ricco:30169.m006516" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00267t00008; alternateUTRof:Thecc1EG015367t3; inference alignment:Newbler:10:TSA:cgbaL_g00267t00006" mRNA complement(join(27591147..27591820,27592380..27592509, 27592742..27592937,27593229..27593300,27593422..27593494, 27593595..27593699,27594115..27594237,27594410..27594486, 27594796..27594840,27594956..27595176,27596510..27596688)) /locus_tag="TCM_015367" /product="Spermidine synthase 3 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30169.m006516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010253t1" /inference="similar to AA sequence:ricco:30169.m006516" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00267t00004; alternateUTRof:Thecc1EG015367t3; inference alignment:Newbler:10:TSA:cgbaL_g00267t00006" mRNA complement(join(27591147..27591820,27592380..27592509, 27592742..27592937,27593229..27593300,27593422..27593494, 27593595..27593699,27594115..27594237,27594410..27594486, 27594796..27594840,27594944..27595176,27596510..27596688)) /locus_tag="TCM_015367" /product="Spermidine synthase 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010253t1" /inference="similar to AA sequence:ricco:30169.m006516" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00267t00003; alternateUTRof:Thecc1EG015367t1; inference alignment:Newbler:10:TSA:cgbaL_g00267t00006" mRNA complement(join(27591147..27591627,27591714..27591820, 27592380..27592509,27592742..27592937,27593229..27593300, 27593422..27593494,27593595..27593699,27594115..27594237, 27594410..27594486,27594796..27594840,27594956..27595176, 27595779..27595829,27596510..27596688)) /locus_tag="TCM_015367" /product="Spermidine synthase 3 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30169.m006516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010253t1" /inference="similar to AA sequence:ricco:30169.m006516" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00267t00006; inference alignment:Newbler:10:TSA:cgbaL_g00267t00006" mRNA complement(join(27591147..27591820,27592380..27592509, 27592742..27592937,27593229..27593300,27593422..27593494, 27593595..27593699,27594115..27594237,27594410..27594486, 27594796..27594840,27594956..27595176,27595779..27595829, 27596510..27596688)) /locus_tag="TCM_015367" /product="Spermidine synthase 3 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30169.m006516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010253t1" /inference="similar to AA sequence:ricco:30169.m006516" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00267t00002; alternateUTRof:Thecc1EG015367t3; inference alignment:Newbler:10:TSA:cgbaL_g00267t00006" mRNA complement(join(27591147..27591627,27591714..27591820, 27592380..27592509,27592742..27592937,27593229..27593300, 27593422..27593494,27593595..27593699,27594115..27594237, 27594410..27594486,27594796..27594840,27594944..27595176, 27595779..27595829,27596510..27596688)) /locus_tag="TCM_015367" /product="Spermidine synthase 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010253t1" /inference="similar to AA sequence:ricco:30169.m006516" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00267t00005; alternateUTRof:Thecc1EG015367t1; inference alignment:Newbler:10:TSA:cgbaL_g00267t00006" mRNA complement(join(27591147..27591820,27592380..27592509, 27592742..27592937,27593229..27593300,27593422..27593494, 27593595..27593699,27594115..27594237,27594410..27594486, 27594796..27594840,27594944..27595176,27595779..27595829, 27596510..27596688)) /locus_tag="TCM_015367" /product="Spermidine synthase 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010253t1" /inference="similar to AA sequence:ricco:30169.m006516" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00267t00001; alternateUTRof:Thecc1EG015367t1; inference alignment:Newbler:10:TSA:cgbaL_g00267t00006" mRNA complement(join(27591598..27591621,27591714..27591820, 27592380..27592509,27592742..27592937,27593229..27593300, 27593422..27593494,27593595..27593699,27594115..27594237, 27594410..27594486,27594796..27594840,27594956..27595176, 27596510..27596743)) /locus_tag="TCM_015367" /product="Spermidine synthase 3 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30169.m006516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010253t1" /inference="similar to AA sequence:ricco:30169.m006516" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc259t7; alternateUTRof:Thecc1EG015367t3; inference alignment:Newbler:10:TSA:cgbaL_g00267t00006" CDS complement(join(27591722..27591820,27592380..27592509, 27592742..27592937,27593229..27593300,27593422..27593494, 27593595..27593699,27594115..27594237,27594410..27594486, 27594796..27594840,27594956..27595145)) /locus_tag="TCM_015367" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006516; paralog of Thecc1EG010253t1" /codon_start=1 /product="Spermidine synthase 3 isoform 3" /protein_id="EOY23490.1" /db_xref="TAIR:AT5G53120.5" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KJ05" /translation="MGEGAGRGLECQKIMDGKVNNGNGSEKAIPSCCLKARASAPELE AKCHSTVVSGWFSEYQSSSDKAGKRVFFNNPMWPGEAHSLKVENILYRGKSDYQEVLV FESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIRSPKTVLVVGGGDGGVLREI ARHSSVERIDICEIDKMVIDVSKKFFPELAVGFEDPRVCLHVGDAVEFLRHVPKGKYD AIIVDSSDPVGPAQELVEKPFFETIARALRPGGVLCNMAESMWLHTHLIEDMISICRE TFKGSVHYAWASVPTYPSGVIGFLICSTEGPPVDFVNPINPIEKLDGAYHHKRELRFY NSEMHRAAFALPSFLKREVRLLCDSATTARGVCVS" CDS complement(join(27591722..27591820,27592380..27592509, 27592742..27592937,27593229..27593300,27593422..27593494, 27593595..27593699,27594115..27594237,27594410..27594486, 27594796..27594840,27594956..27595145)) /locus_tag="TCM_015367" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30169.m006516; paralog of Thecc1EG010253t1" /codon_start=1 /product="Spermidine synthase 3 isoform 3" /protein_id="EOY23491.1" /db_xref="TAIR:AT5G53120.5" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KJ05" /translation="MGEGAGRGLECQKIMDGKVNNGNGSEKAIPSCCLKARASAPELE AKCHSTVVSGWFSEYQSSSDKAGKRVFFNNPMWPGEAHSLKVENILYRGKSDYQEVLV FESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIRSPKTVLVVGGGDGGVLREI ARHSSVERIDICEIDKMVIDVSKKFFPELAVGFEDPRVCLHVGDAVEFLRHVPKGKYD AIIVDSSDPVGPAQELVEKPFFETIARALRPGGVLCNMAESMWLHTHLIEDMISICRE TFKGSVHYAWASVPTYPSGVIGFLICSTEGPPVDFVNPINPIEKLDGAYHHKRELRFY NSEMHRAAFALPSFLKREVRLLCDSATTARGVCVS" CDS complement(join(27591722..27591820,27592380..27592509, 27592742..27592937,27593229..27593300,27593422..27593494, 27593595..27593699,27594115..27594237,27594410..27594486, 27594796..27594840,27594956..27595145)) /locus_tag="TCM_015367" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30169.m006516; paralog of Thecc1EG010253t1" /codon_start=1 /product="Spermidine synthase 3 isoform 3" /protein_id="EOY23493.1" /db_xref="TAIR:AT5G53120.5" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KJ05" /translation="MGEGAGRGLECQKIMDGKVNNGNGSEKAIPSCCLKARASAPELE AKCHSTVVSGWFSEYQSSSDKAGKRVFFNNPMWPGEAHSLKVENILYRGKSDYQEVLV FESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIRSPKTVLVVGGGDGGVLREI ARHSSVERIDICEIDKMVIDVSKKFFPELAVGFEDPRVCLHVGDAVEFLRHVPKGKYD AIIVDSSDPVGPAQELVEKPFFETIARALRPGGVLCNMAESMWLHTHLIEDMISICRE TFKGSVHYAWASVPTYPSGVIGFLICSTEGPPVDFVNPINPIEKLDGAYHHKRELRFY NSEMHRAAFALPSFLKREVRLLCDSATTARGVCVS" CDS complement(join(27591722..27591820,27592380..27592509, 27592742..27592937,27593229..27593300,27593422..27593494, 27593595..27593699,27594115..27594237,27594410..27594486, 27594796..27594840,27594956..27595145)) /locus_tag="TCM_015367" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:30169.m006516; paralog of Thecc1EG010253t1" /codon_start=1 /product="Spermidine synthase 3 isoform 3" /protein_id="EOY23494.1" /db_xref="TAIR:AT5G53120.5" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KJ05" /translation="MGEGAGRGLECQKIMDGKVNNGNGSEKAIPSCCLKARASAPELE AKCHSTVVSGWFSEYQSSSDKAGKRVFFNNPMWPGEAHSLKVENILYRGKSDYQEVLV FESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIRSPKTVLVVGGGDGGVLREI ARHSSVERIDICEIDKMVIDVSKKFFPELAVGFEDPRVCLHVGDAVEFLRHVPKGKYD AIIVDSSDPVGPAQELVEKPFFETIARALRPGGVLCNMAESMWLHTHLIEDMISICRE TFKGSVHYAWASVPTYPSGVIGFLICSTEGPPVDFVNPINPIEKLDGAYHHKRELRFY NSEMHRAAFALPSFLKREVRLLCDSATTARGVCVS" CDS complement(join(27591722..27591820,27592380..27592509, 27592742..27592937,27593229..27593300,27593422..27593494, 27593595..27593699,27594115..27594237,27594410..27594486, 27594796..27594840,27594956..27595145)) /locus_tag="TCM_015367" /note="encoded by transcript variant 9; alternatively spliced; dbxref ricco:30169.m006516; paralog of Thecc1EG010253t1" /codon_start=1 /product="Spermidine synthase 3 isoform 3" /protein_id="EOY23496.1" /db_xref="TAIR:AT5G53120.5" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KJ05" /translation="MGEGAGRGLECQKIMDGKVNNGNGSEKAIPSCCLKARASAPELE AKCHSTVVSGWFSEYQSSSDKAGKRVFFNNPMWPGEAHSLKVENILYRGKSDYQEVLV FESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIRSPKTVLVVGGGDGGVLREI ARHSSVERIDICEIDKMVIDVSKKFFPELAVGFEDPRVCLHVGDAVEFLRHVPKGKYD AIIVDSSDPVGPAQELVEKPFFETIARALRPGGVLCNMAESMWLHTHLIEDMISICRE TFKGSVHYAWASVPTYPSGVIGFLICSTEGPPVDFVNPINPIEKLDGAYHHKRELRFY NSEMHRAAFALPSFLKREVRLLCDSATTARGVCVS" CDS complement(join(27591722..27591820,27592380..27592509, 27592742..27592937,27593229..27593300,27593422..27593494, 27593595..27593699,27594115..27594237,27594410..27594486, 27594796..27594840,27594944..27595145)) /locus_tag="TCM_015367" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006516; paralog of Thecc1EG010253t1" /codon_start=1 /product="Spermidine synthase 3 isoform 1" /protein_id="EOY23488.1" /db_xref="TAIR:AT5G53120.5" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KJ05" /translation="MGEGAGRGLECQKIMDGKVNNGNGSEKAIPSCCLKARASAPELE AKCHSTVVSGWFSEYQSSSGHYLDKAGKRVFFNNPMWPGEAHSLKVENILYRGKSDYQ EVLVFESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIRSPKTVLVVGGGDGGV LREIARHSSVERIDICEIDKMVIDVSKKFFPELAVGFEDPRVCLHVGDAVEFLRHVPK GKYDAIIVDSSDPVGPAQELVEKPFFETIARALRPGGVLCNMAESMWLHTHLIEDMIS ICRETFKGSVHYAWASVPTYPSGVIGFLICSTEGPPVDFVNPINPIEKLDGAYHHKRE LRFYNSEMHRAAFALPSFLKREVRLLCDSATTARGVCVS" CDS complement(join(27591722..27591820,27592380..27592509, 27592742..27592937,27593229..27593300,27593422..27593494, 27593595..27593699,27594115..27594237,27594410..27594486, 27594796..27594840,27594944..27595145)) /locus_tag="TCM_015367" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006516; paralog of Thecc1EG010253t1" /codon_start=1 /product="Spermidine synthase 3 isoform 1" /protein_id="EOY23489.1" /db_xref="TAIR:AT5G53120.5" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KJ05" /translation="MGEGAGRGLECQKIMDGKVNNGNGSEKAIPSCCLKARASAPELE AKCHSTVVSGWFSEYQSSSGHYLDKAGKRVFFNNPMWPGEAHSLKVENILYRGKSDYQ EVLVFESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIRSPKTVLVVGGGDGGV LREIARHSSVERIDICEIDKMVIDVSKKFFPELAVGFEDPRVCLHVGDAVEFLRHVPK GKYDAIIVDSSDPVGPAQELVEKPFFETIARALRPGGVLCNMAESMWLHTHLIEDMIS ICRETFKGSVHYAWASVPTYPSGVIGFLICSTEGPPVDFVNPINPIEKLDGAYHHKRE LRFYNSEMHRAAFALPSFLKREVRLLCDSATTARGVCVS" CDS complement(join(27591722..27591820,27592380..27592509, 27592742..27592937,27593229..27593300,27593422..27593494, 27593595..27593699,27594115..27594237,27594410..27594486, 27594796..27594840,27594944..27595145)) /locus_tag="TCM_015367" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30169.m006516; paralog of Thecc1EG010253t1" /codon_start=1 /product="Spermidine synthase 3 isoform 1" /protein_id="EOY23492.1" /db_xref="TAIR:AT5G53120.5" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KJ05" /translation="MGEGAGRGLECQKIMDGKVNNGNGSEKAIPSCCLKARASAPELE AKCHSTVVSGWFSEYQSSSGHYLDKAGKRVFFNNPMWPGEAHSLKVENILYRGKSDYQ EVLVFESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIRSPKTVLVVGGGDGGV LREIARHSSVERIDICEIDKMVIDVSKKFFPELAVGFEDPRVCLHVGDAVEFLRHVPK GKYDAIIVDSSDPVGPAQELVEKPFFETIARALRPGGVLCNMAESMWLHTHLIEDMIS ICRETFKGSVHYAWASVPTYPSGVIGFLICSTEGPPVDFVNPINPIEKLDGAYHHKRE LRFYNSEMHRAAFALPSFLKREVRLLCDSATTARGVCVS" CDS complement(join(27591722..27591820,27592380..27592509, 27592742..27592937,27593229..27593300,27593422..27593494, 27593595..27593699,27594115..27594237,27594410..27594486, 27594796..27594840,27594944..27595145)) /locus_tag="TCM_015367" /note="encoded by transcript variant 8; alternatively spliced; dbxref ricco:30169.m006516; paralog of Thecc1EG010253t1" /codon_start=1 /product="Spermidine synthase 3 isoform 1" /protein_id="EOY23495.1" /db_xref="TAIR:AT5G53120.5" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KJ05" /translation="MGEGAGRGLECQKIMDGKVNNGNGSEKAIPSCCLKARASAPELE AKCHSTVVSGWFSEYQSSSGHYLDKAGKRVFFNNPMWPGEAHSLKVENILYRGKSDYQ EVLVFESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIRSPKTVLVVGGGDGGV LREIARHSSVERIDICEIDKMVIDVSKKFFPELAVGFEDPRVCLHVGDAVEFLRHVPK GKYDAIIVDSSDPVGPAQELVEKPFFETIARALRPGGVLCNMAESMWLHTHLIEDMIS ICRETFKGSVHYAWASVPTYPSGVIGFLICSTEGPPVDFVNPINPIEKLDGAYHHKRE LRFYNSEMHRAAFALPSFLKREVRLLCDSATTARGVCVS" mobile_element complement(27599947..27600002) /note="source:scaffold_1_CACTA_0016 1413 1468" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27600301..27601107) /note="source:CACAO_on_S_E46_scaffold_2 380 1217" /mobile_element_type="transposon:TIR/Mutator" mobile_element 27604639..27604757 /note="source:CACAO_PIF_E144_scaffold_10 3538 3658" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(27604980..27608381) /locus_tag="TCM_015368" /note="dbxref CacaoGD:Thecc1EG015368" mRNA complement(join(27604980..27606018,27606162..27606267, 27607499..27608381)) /locus_tag="TCM_015368" /product="Highly ABA-induced PP2C gene 3, putative" /inference="alignment:exonerate- protein:2:ricco:30169.m006515" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016457t1" /inference="similar to AA sequence:ricco:30169.m006515" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1738t10" CDS complement(join(27605705..27606018,27606162..27606267, 27607499..27608374)) /locus_tag="TCM_015368" /note="dbxref ricco:30169.m006515; paralog of Thecc1EG016457t1" /codon_start=1 /product="Highly ABA-induced PP2C gene 3, putative" /protein_id="EOY23497.1" /db_xref="TAIR:AT2G29380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIK1" /translation="MLFSPSIYINFNLFRPVVALLFMQKKMKAQKIPKLHSPSTKAPR RMTSASGELSKLTVVRTKNARRRRLEIRRLKYTCQTMMNITITESSSNGDKDKNLLHG SKPSNGLTDISLSLSSSSSKQSSSEENDIVLAGFGGKTCKKKDDIESLTYMSHGLLSI MGRRREMEDAVKVELGFMVKGGENFDFYGVYDGHGGSRVAEECGERLHNVLVEEIVED NEEGNGIDWGRTMERCFEKMDEEVNRGRVGEEMVGSTAVVAVVGNGKVIVANCGDSRA VLSRGGVAVALSFDHKPDRPDELERVEAGGGRVINWNGYRVLGVLATSRSIGDQCLKP FVICKPEVTVRELTNRDEFLILASDGLWDVISNEVACRVVRRCLNGRIRRKSLENIVN ENRAAEAAAVLVELAIARGSKDNISVIVVELRKPSTFLP" gene complement(27610653..27613741) /locus_tag="TCM_015369" /note="dbxref CacaoGD:Thecc1EG015369" mRNA complement(27610653..27613741) /locus_tag="TCM_015369" /product="Tetratricopeptide repeat-like superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029817t1" /inference="similar to AA sequence:Phytozome:GSVIVT01006121001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage" CDS complement(27611050..27613632) /locus_tag="TCM_015369" /note="paralog of Thecc1EG029817t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY23498.1" /db_xref="Phytozome:GSVIVT01006121001" /db_xref="TAIR:AT3G49170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5G1T1" /translation="MMMMSLSLPSPAKPPPHSLKPSTRPRQTLAPPSVIRPVNFETLR NRLINHLDEGHLHKAVSTLDVMARQNTHPDLITYSLLLKACIRSRDFQLGKIVHTNLN QSKLELDSVLFNSLISLYSKSGDWARAHKIFQRMEDKRDLVSWSAMISCFANNKMEFK AILTFLDMLENGFYPNEYCFTAVVRACSKAEFFSIGEIILGFLVKSGYLESDTNVGCA LIDMFVKGNSDLASAFKVFDKMPAKNVVAWTLMITRCTQLGYPRDAIDLFLDMVLGGY VPDRFTLSGIISACTELESESLSLGKQLHSWVIRSGFALDVCIGCSLVDMYAKCTVGG SLDDSRKVFGRMEEHNVMSWTAIITGYVQCGGRDKEALELFSKMMGGPVQPNHFTFSS VLKACGNLSDSCTGEQFYAHAVKHGFASDDCVGNSLISMYARSGRMDNAQKAFESLFE KNLVSYNTIVDACAKNLDSEGAFELFHELTDSKIELNAFTFASLLSGASSVGAIGKGE QIHARVLKSGYQSNQCICNALISMYARCGHIEAAFLVFNEMGDRNVISWTSMITGFAK HGFATRALEIFHEMLEAGIRPNEITYTAVLSACSHAGLISEGWEIFNSMPIEHGLVPG MEHYACMVDLLGRSGSLREAIELINTMPCTPDALVWRTFLGACRVHHDKELGEYAAKM ILQQDPHDAAAYILLSNLYASAGQWEDVAQIRKDMKERNLIKEAGCSWIEVDNKMHRF HVADTSHPQVKEIYEKLDEMAFKIKGLGYVPDTDFVLHELEEEQKEQYVFQHSEKIAV AFGLISTSRSKPIRVFKNLRVCGDCHTAIKYISMATGREIVLRDSNRFHHIKNGTCSC NDFW" gene complement(27613791..27618621) /locus_tag="TCM_015370" /note="dbxref CacaoGD:Thecc1EG015370" mRNA complement(join(27613791..27615105,27615212..27615241, 27615735..27615767,27616550..27616596,27616666..27617495, 27618050..27618621)) /locus_tag="TCM_015370" /product="Receptor-like protein kinase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400018928" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015372t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s02040.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc47t3" mRNA complement(join(27613872..27615105,27615212..27615241, 27615735..27615767,27616925..27617495,27618050..27618221)) /locus_tag="TCM_015370" /product="Kinase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400018928" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015372t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s02040.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc47t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc47t3" CDS complement(join(27613958..27615105,27615212..27615241, 27615735..27615767,27616925..27617420)) /locus_tag="TCM_015370" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015372t1" /codon_start=1 /product="Kinase, putative isoform 2" /protein_id="EOY23500.1" /db_xref="Phytozome:POPTR_0015s02040.1" /db_xref="TAIR:AT5G38280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIJ6" /translation="MPLISRKLVSVFKFAISLNLVHHGTLFRGRLLFVAHISLLFLPL VHLTVATDNNKCAPSSCGKIHNISYPFRLRGDPSNCGNKSYELGCEQNNLTALYLYSG KYYVRAINYNNYTIRLVDAGIQKENCSSLPRYSLTVSNFSDKDAFIWYKYQWDESDYL PKLAESFFHKMFYTVISYWVLMVLIIGAIITLKCCCGAPCVTVFLIYKWRKRHMSMYD RIENFLQSQNNFMPIRYSYSQIKKMTEGFKDKLGEGGYGSVFKGKLRSGHLVAVKMLG KSKANGQEFINEVATIGRIHHVNVVQLIGFCAEGTKRALVYEFMPNGSLDKYTFGREG NTTIGWEKIYEISLGVARGIEYLHRGCDMQILHFDIKPHNILLDENFTAKVSDFGLAK LYPTNDTTVTLTAARGTIGYIALELFYKNIGGVSYKADVYSFGMLLMEMAAKRRNSTT VTEQSSEAYFPCNVYDQIVGGRDFEEIQEASEEEKKIVKKMIMVALWCIQMKPSDRPS MTKVVEMLEGEVESLQVPPKPVLYPQQTLVRSSGSHSTQQESSSASTDYTESISLINS GR" CDS complement(join(27613958..27615105,27615212..27615241, 27615735..27615767,27616550..27616596,27616666..27617420)) /locus_tag="TCM_015370" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015372t1" /codon_start=1 /product="Receptor-like protein kinase, putative isoform 1" /protein_id="EOY23499.1" /db_xref="Phytozome:POPTR_0015s02040.1" /db_xref="TAIR:AT1G66910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIJ6" /translation="MPLISRKLVSVFKFAISLNLVHHGTLFRGRLLFVAHISLLFLPL VHLTVATDNNKCAPSSCGKIHNISYPFRLRGDPSNCGNKSYELGCEQNNLTALYLYSG KYYVRAINYNNYTIRLVDAGIQKENCSSLPRYSLTVSNFSDKDAFIWYKYQWDESDYL PKLAESMVFLNCANPLNSSSFYVDAAPCINGGNHSNSSFSRSRRYYYVVFGPTAASEV EDLCRVEVMALTSLPVKKGMNISYMEIYSRLVCGTDHLQCLPFATTVKEGFFHKMFYT VISYWVLMVLIIGAIITLKCCCGAPCVTVFLIYKWRKRHMSMYDRIENFLQSQNNFMP IRYSYSQIKKMTEGFKDKLGEGGYGSVFKGKLRSGHLVAVKMLGKSKANGQEFINEVA TIGRIHHVNVVQLIGFCAEGTKRALVYEFMPNGSLDKYTFGREGNTTIGWEKIYEISL GVARGIEYLHRGCDMQILHFDIKPHNILLDENFTAKVSDFGLAKLYPTNDTTVTLTAA RGTIGYIALELFYKNIGGVSYKADVYSFGMLLMEMAAKRRNSTTVTEQSSEAYFPCNV YDQIVGGRDFEEIQEASEEEKKIVKKMIMVALWCIQMKPSDRPSMTKVVEMLEGEVES LQVPPKPVLYPQQTLVRSSGSHSTQQESSSASTDYTESISLINSGR" gene 27617949..27622880 /locus_tag="TCM_015371" /note="dbxref CacaoGD:Thecc1EG015371" mRNA join(27617949..27618907,27619026..27619241, 27619878..27619904,27620051..27621261,27622741..27622880) /locus_tag="TCM_015371" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30169.m006507" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012456t1" /inference="similar to AA sequence:ricco:30169.m006507" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2892t1" CDS join(27618544..27618907,27619026..27619241, 27619878..27619904,27620051..27621165) /locus_tag="TCM_015371" /note="dbxref ricco:30169.m006507; paralog of Thecc1EG012456t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY23501.1" /db_xref="TAIR:AT1G66920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HWF7" /translation="MVPINFSLEMYLSFFCLLLMLIYPEHGSGLQDCPELSWGSNGTA IRFPFRLKGMHPESCGYPGFDLSCTEKNQTLLELPHSVRVFVERIDYQSQEIYTSHPD GCSKGTPKLEFVYFSLPVQVDDISKYPLSSCTKLYSGSYPDGMFLDILPLKWTEPMCG FCEQNGKHCRLKNDSTVAQIERFDAPIKAKGTKGTMRKLVTAGVVLGSRLVVIAIIAV YYLYSSNKMRKENDAKIEKFLEDHRSLKPSRYSYADIKRITNQFKEKLGEGAYGTVFK GTLSSEIHVAVKILNSSIGDGEEFINEIGTMGRIHRVNVVRLVGFCADGFRRALVYEF LPNESLEKLIFSSDGRQHSLGWEKLLDIAIGIAKGIEYLHQGCDQRILHFDIKPHNIL LDEKFNPKISDFGLAKLCSKDQSIVSMTAARGTMGYIAPEVYSRNFGNVSYKSDVYSF GMLILEMVGGRKNVDVTVESASQVYFPEWAYSRLNQGDELIIRIEEDGHANIAKRLTI VGLWCIQWYPVGRPSMKNVVQMLEGEGDNLSMPPNPFGSTGPIRMNPSMPVRNVHQES AVISETE" mobile_element complement(27621700..27621744) /note="source:CACAO_M_E42514_F40_scaffold_5 137 180" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27621825..27622093 /note="source:scaffold_1_CACTA_0008 7145 7372" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27622081..27622238 /note="source:scaffold_4_CACTA_0506 6889 7044" /mobile_element_type="transposon:TIR/CACTA" gene complement(27622093..27625651) /locus_tag="TCM_015372" /note="dbxref CacaoGD:Thecc1EG015372" mRNA complement(join(27622093..27624143,27624294..27624326, 27624460..27625651)) /locus_tag="TCM_015372" /product="Kinase, putative" /inference="alignment:exonerate- protein:2:ricco:29657.m000479" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015370t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s02040.1" /note="quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc5451t2" mobile_element 27622137..27622288 /note="source:CACAO_PIF_E54_scaffold_3 8976 9141" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS complement(join(27623038..27624143,27624294..27624326, 27624460..27625231)) /locus_tag="TCM_015372" /note="paralog of Thecc1EG015370t1" /codon_start=1 /product="Kinase, putative" /protein_id="EOY23502.1" /db_xref="Phytozome:POPTR_0015s02040.1" /db_xref="TAIR:AT5G38260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIJ6" /translation="MLAARLLFAVTAVVFLALPRETCNAKGNHHCSPSSCGSIQNISY PFRLNSDPHNCGVPRYNSSCQNNLTVLNLKSGKYYVQAINYNNYTIRLVDAGVQKGNC SSIPQYSLSYYNFTSGDIAPYSLSSWTYNRSKNILFLNCSKPVNAHLYLHSSPCLDDA FSSNFWVPESKGYLYVKIGRTKASDLSDSCRIELMAMTSLLGKDEKNITFLDIHDELA YGFELSWSQVYCGDCRWWPRNLCIIDEANHVYCGWTPLVGTLVGMVIGTIAYLHLVAI ICGTPCVTLFVVHKWRRRHLSMYDTVEEFLQSHNNLMPVRYSYSDVKKMTDGFRVKLG EGGYGYVYKGKLRSGRIAAIKMLSKSKADGQDFINEVATIGRIHHVNVVQLIGFCAKG SKRALVYDFMPNGSLDKYIFSPERCTTLSWKKTYEIAVGVAHGIEYLHRGCDMQILHF DIKPHNILLDENFIPKISDFGLAKLYAVDDSIVSLTAARGTMGYIAPELFYKNIGGVS YKADVYSFGMLLLEMIGRRKNLDPLAEHSSEIYFPFYVYGQIIEGNNVNEVGDATEED KEMIKKMSIVALWCIQMKPSDRPSMSKVVEMLEGGLESLQVPPKPLLYPEERVGDQTN ETESSSALSLVG" gene 27628246..27631468 /locus_tag="TCM_015373" /note="dbxref CacaoGD:Thecc1EG015373" mRNA join(27628246..27629335,27629801..27629827, 27629919..27631468) /locus_tag="TCM_015373" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s02010.1.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012456t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s02010.2" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc896t2" CDS join(27628582..27629335,27629801..27629827, 27629919..27631033) /locus_tag="TCM_015373" /note="paralog of Thecc1EG012456t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY23503.1" /db_xref="Phytozome:POPTR_0015s02010.2" /db_xref="TAIR:AT1G66920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HWF7" /translation="MGRYRIRFNDNFVIMMVNYLFCFVLVVSMAEAVPIQDECKVTNC KHHEPPVKFPFRLQDRQPPHCGYPHPGFQLSCSENNQTVLNFPRSMKLLVKHIDYKEQ QIRLYDPGHCLWKQLSDLNISAFPFRYEWLSYSRLQAFQPKPVDFYTLFNCSSKDEFL YRRYRIPCLSNTGSQIIAFGYDEQAYDENLLNCSKTGNISAAIYPYLTGPFQLLWDKP NCRNCEAQGRGCKLKSNSRQDQTECFDIPRHHRGARKRLIIAGVILGSFILATIVIGV GWAHRLKKREQESQLKIEKFLEDYRAVKPSRYSYADIKRITNHFKDKLGQGGYGTVFK GRLSNDVLVAVKVLNNFKGNGEEFINEVGSMGRIHHVNVTRLVGFCADGYERALVYEY LPNESLEKFIFSATGENRFLSWEKLQDIALGVAKGIEYLHQGCEQRILHFDIKPHNIL LDQNFNPKISDFGLAKLCSKEQSAISMTTARGTMGYIAPEVLSRNFGNVSYKSDVYSF GMLLLEMVGGRKNIDVTAENTSQVYFPEWAYNRLDKGEELGIRIEDEEHTGIVKKLTI VGLWCIQWYPVDRPPMKVVVQMLEGEGSLLTVPPNPFASTDQSKMGANMPRKPVNREL PAIAELE" mobile_element 27629912..27631025 /note="source:CACAO_Mutator_E592_scaffold_3 1741 2854" /mobile_element_type="transposon:TIR/Mutator" gene complement(27631099..27635266) /locus_tag="TCM_015374" /note="dbxref CacaoGD:Thecc1EG015374" mRNA complement(join(27631099..27631205,27632899..27633537, 27634325..27635266)) /locus_tag="TCM_015374" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30169.m006503.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005156t1" /inference="similar to AA sequence:ricco:30169.m006503" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1376t4_C2" CDS complement(join(27633110..27633537,27634325..27635021)) /locus_tag="TCM_015374" /note="dbxref ricco:30169.m006503; paralog of Thecc1EG005156t1" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY23504.1" /db_xref="TAIR:AT5G53110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDV7" /translation="MDTLKIFSHLLFFIFFFFCSYLHTTTSTDTCIRAACRSTKPEIR FPFRIEGRQSKSCGYPGFHLSCDSSNQTILELPYSGKFSVQGIDYAAQEIWINDPNNC LPQRILWLNLSGSPFNGVNYQKFTFFNCSLDYLKYGFNPIACLSGGNYTVFATSSTKV VSSLSSSCQRVTTVAVPVEWASHDQILKSDLSNNLRLTWDKPKCRKCESRGGECRLKA NSTRQTICSNAPGRGITRSVRYAITVGAGVPTLLCILGLLCFVCGKVQSCTVRRNSIP ELNATVAPQPTIEDGLDGPTIESYPKIVIGESRRLPKPDDNTCPICLCEYWPKETLRS IPQCQHCFHADCIDEWLRLNATCPICRNSPERPSSPVQDS" gene 27633848..27634320 /locus_tag="TCM_015375" /note="dbxref CacaoGD:Thecc1EG015375" mRNA join(27633848..27633919,27634007..27634320) /locus_tag="TCM_015375" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1165t4_C2" CDS join(27633869..27633919,27634007..27634126) /locus_tag="TCM_015375" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23505.1" /translation="MAANLFITTPPAHGCWYSGKALSAIPAQEHFKPFTGQYYTIVQS TLIVVLETENVN" gene complement(27635802..27636493) /locus_tag="TCM_015376" /note="dbxref CacaoGD:Thecc1EG015376" mRNA complement(join(27635802..27636387,27636466..27636493)) /locus_tag="TCM_015376" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400016051" /inference="similar to AA sequence:Phytozome:Glyma07g09560.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7734t1" CDS complement(27636011..27636367) /locus_tag="TCM_015376" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23506.1" /db_xref="Phytozome:Glyma07g09560.1" /translation="MVRATLSRLFSSISELSIPKPSLSSVRSEPMTRFGSNSASRFLC CSAQQPQLNHQEKANEEKREAVKEDPEIENKENEEDDDEDGDHVNKQTGEVGGPRGPE PTRYGDWERNGRCYDF" gene 27636986..27640300 /locus_tag="TCM_015378" /note="dbxref CacaoGD:Thecc1EG015378" mRNA join(27636986..27637420,27639719..27639891, 27639994..27640300) /locus_tag="TCM_015378" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01850.1" /note="quality class is strong-utrpoor, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1693t2" gene complement(27637059..27653321) /locus_tag="TCM_015379" /note="dbxref CacaoGD:Thecc1EG015379" mRNA complement(join(27637059..27637424,27637533..27637540, 27639731..27639888,27639987..27641197,27641451..27641708, 27642081..27642348,27642566..27642871,27643102..27643370, 27643470..27643685,27644045..27645646,27645814..27645975, 27646257..27646411,27646788..27647657,27647825..27648294, 27648386..27648456,27648572..27648915,27648999..27649178, 27649355..27649458,27650125..27650234,27650717..27650813, 27650911..27651011,27651219..27651371,27651770..27651883, 27652158..27652277)) /locus_tag="TCM_015379" /product="NADH-dependent glutamate synthase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006499" /inference="similar to AA sequence:ricco:30169.m006499" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc350t22_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc350t22_C2" mRNA complement(join(27637059..27637424,27637533..27637540, 27639731..27639888,27639987..27641708,27642081..27642348, 27642566..27642871,27643102..27643370,27643470..27643685, 27644045..27645646,27645814..27645975,27646257..27646411, 27646788..27647657,27647825..27648294,27648386..27648456, 27648572..27648915,27648999..27649178,27649355..27649458, 27650125..27650234,27650717..27650813,27650911..27651011, 27651219..27651371,27651770..27651883,27652158..27652277)) /locus_tag="TCM_015379" /product="NADH-dependent glutamate synthase 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006499" /inference="similar to AA sequence:Phytozome:GSVIVT01038714001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc350t17_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc350t22_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc336t53" mRNA complement(join(27637059..27637424,27637533..27637540, 27639731..27639888,27639987..27641197,27641451..27641708, 27642081..27642348,27642566..27642871,27643102..27643370, 27643470..27643685,27644045..27645646,27645814..27645975, 27646257..27646411,27646788..27647657,27647825..27648294, 27648386..27648456,27648572..27648915,27648999..27649178, 27649355..27649458,27650125..27650746)) /locus_tag="TCM_015379" /product="NADH-dependent glutamate synthase 1 isoform 4" /inference="alignment:exonerate- protein:2:ricco:30169.m006499" /inference="similar to AA sequence:ricco:30169.m006499" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc350t15_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc350t22_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc336t53" CDS join(27637345..27637420,27639719..27639891, 27639994..27640011) /locus_tag="TCM_015378" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23507.1" /translation="MGAEQALKRIPRIKFPQRHPKSSASGCVSETQARPKYGNIIDSF ITRSRSDVPAPPINTAVGGKASLLPKRTPVSEREIEAILLGGCF" CDS complement(join(27640913..27641197,27641451..27641708, 27642081..27642348,27642566..27642871,27643102..27643370, 27643470..27643685,27644045..27645646,27645814..27645975, 27646257..27646411,27646788..27647657,27647825..27648294, 27648386..27648456,27648572..27648915,27648999..27649178, 27649355..27649458,27650125..27650234,27650717..27650813, 27650911..27651011,27651219..27651371,27651770..27651883, 27652158..27652259)) /locus_tag="TCM_015379" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006499" /codon_start=1 /product="NADH-dependent glutamate synthase 1 isoform 1" /protein_id="EOY23508.1" /db_xref="TAIR:AT5G53460.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LV03" /translation="MLIRMSHRGACGCETNTGDGAGILVALPHDFYKEVARDVGFEMP PSGEYGVGMFFLPTSESRREESKNVFTKVAESLGHRVLGWRSVPTDNSGLGNAALQTE PVIEQVFLTPTPRSKADLEQQMYILRRVSMVAIRAALNLQHGGVRDFYICSLSSRTVV YKGQLKPDQLQNYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRVLGHNGEIN TLRGNVNWMKAREGLLKCKELGLSKNEMKKLLPIVDASSSDSGAFDGVLELLVRAGRS LPEAVMMMIPEAWQNDKNMDPHRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRN GLRPGRFYVTHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKHTVVDDDAL KQQYSLARPYGEWLESQKIELNNIVDSVQESERVTPAIAGAIPASNDDDNMEHMGIHG LLAPLKAFGYTVEALEMLLLPMAKDGTEALGSMGNDTPLAVMSNREKLTFEYFKQMFA QVTNPPIDPIREKIVTSMECMIGPEGDLTETTEEQCHRLSLKGPLLSVEETEAIKKMN YRGWRSKVLDITYSKDRGRKGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAV SSLLAVGAVHHHLVKKLERTRVGLIVESAEPREVHHFCTLVGFGADAICPYLAIEAIW RLQVDGKIPPKSSGEFYSKHELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEAL GLSSEVIEKCFAGTPSRVEGATFEMLARDALHLHELAFPSRALAPGSAEAVALPNPGD YHWRKGGEVHLNDPLAIAQLQEAARSNSVAAYKEYAKRIHELNKSCNLRGMLKFKEAG VKIPLDEVEPASEIVKRFCTGAMSYGSISLEAHSTLAIAMNRIGGKSNTGEGGEQPSR MEPLPDGLMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKV IGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIHDLKNSNPSARISVKLVSEAGVG VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRT VLQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPV LREKFAGEPEHVINFFFMLAEEVREIMSQLGFRTLNEMVGRSDMLEVDKEVLRNNEKL QNIDLSLLLRPAADIRPEAAQYCIQKQDHGLDMALDQKLIKLSKAALEKGLPVYIETP ICNVNRAVGTMLSHEVTKRYHLAGLPAGTIHIKLSGSAGQSLGSFMCPGIMLELEGDS NDYVGKGLSGGKIVVYPPKGSRFDPKENIVIGNVALYGATSGEAYFNGMAAERFCVRN SGAKAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFQSRCNPE LVDLDKVEEEEDIMTLKMMIQQHQRHTNSQLAREVLADFENLLPKFIKVFPRDYKRVL AKVKEEEASKEALERAAKEAEERDEAELVEKDAFEELKKLAANLMNEESSQEGEAKPV KRPSRVSDAVKHRGFVAYEREGVQYRNPNVRMNDWKEVMEESKPGPLLKTQSARCMDC GTPFCHQENSGCPLGNKIPEFNELVYQNRWREALDRLLETNNFPEFTGRVCPAPCEGS CVLGIIENPVSIKSIECAIIDKAFEEGWMVPRPPLKRTGKSIAIVGSGPSGLAAADQL NRMGHSVTVYERADRIGGLMMYGVPNMKADKVDVVQRRVNLMAEEGVKFVVNANVGID PSYSLDQLREENDAIVLAVGATKPRDLPVPGRNLSGVHFAMEFLHANSKSLLDSNLQD GNYISAKGKKVVVIGGGDTGTDCIGTSIRHGCSSIVNLELLPQPPRTRAPGNPWPQWP RIFRVDYGHQEAAAKFGRDPRSYEVLTKRFVGDENGTLKGLEVVRVRWEKDASGKFQF KEVEGSVEIIEADLVLLAMGFLGPESTVADKLGLEQDNRSNFKAEYGRFATNVNGVFA AGDCRRGQSLVVWAISEGRQAAAQVDKYLTRKDEDVSVDGESQKDLVKRHEDLAQRQQ TVMT" CDS complement(join(27640913..27641197,27641451..27641708, 27642081..27642348,27642566..27642871,27643102..27643370, 27643470..27643685,27644045..27645646,27645814..27645975, 27646257..27646411,27646788..27647657,27647825..27648294, 27648386..27648456,27648572..27648915,27648999..27649178, 27649355..27649458,27650125..27650240)) /locus_tag="TCM_015379" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30169.m006499" /codon_start=1 /product="NADH-dependent glutamate synthase 1 isoform 4" /protein_id="EOY23511.1" /db_xref="TAIR:AT5G53460.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LV03" /translation="MQIHSRFSTNTFPSWDRAQPMRVLGHNGEINTLRGNVNWMKARE GLLKCKELGLSKNEMKKLLPIVDASSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAW QNDKNMDPHRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYVTHSG RVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKHTVVDDDALKQQYSLARPYGEW LESQKIELNNIVDSVQESERVTPAIAGAIPASNDDDNMEHMGIHGLLAPLKAFGYTVE ALEMLLLPMAKDGTEALGSMGNDTPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREK IVTSMECMIGPEGDLTETTEEQCHRLSLKGPLLSVEETEAIKKMNYRGWRSKVLDITY SKDRGRKGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHHL VKKLERTRVGLIVESAEPREVHHFCTLVGFGADAICPYLAIEAIWRLQVDGKIPPKSS GEFYSKHELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAG TPSRVEGATFEMLARDALHLHELAFPSRALAPGSAEAVALPNPGDYHWRKGGEVHLND PLAIAQLQEAARSNSVAAYKEYAKRIHELNKSCNLRGMLKFKEAGVKIPLDEVEPASE IVKRFCTGAMSYGSISLEAHSTLAIAMNRIGGKSNTGEGGEQPSRMEPLPDGLMNPKR SAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAG VGLISPPPHHDIYSIEDLAQLIHDLKNSNPSARISVKLVSEAGVGVIASGVVKGHADH VLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTVLQTDGQLKTGRD VAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVI NFFFMLAEEVREIMSQLGFRTLNEMVGRSDMLEVDKEVLRNNEKLQNIDLSLLLRPAA DIRPEAAQYCIQKQDHGLDMALDQKLIKLSKAALEKGLPVYIETPICNVNRAVGTMLS HEVTKRYHLAGLPAGTIHIKLSGSAGQSLGSFMCPGIMLELEGDSNDYVGKGLSGGKI VVYPPKGSRFDPKENIVIGNVALYGATSGEAYFNGMAAERFCVRNSGAKAVVEGVGDH GCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFQSRCNPELVDLDKVEEEEDI MTLKMMIQQHQRHTNSQLAREVLADFENLLPKFIKVFPRDYKRVLAKVKEEEASKEAL ERAAKEAEERDEAELVEKDAFEELKKLAANLMNEESSQEGEAKPVKRPSRVSDAVKHR GFVAYEREGVQYRNPNVRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQENSGCP LGNKIPEFNELVYQNRWREALDRLLETNNFPEFTGRVCPAPCEGSCVLGIIENPVSIK SIECAIIDKAFEEGWMVPRPPLKRTGKSIAIVGSGPSGLAAADQLNRMGHSVTVYERA DRIGGLMMYGVPNMKADKVDVVQRRVNLMAEEGVKFVVNANVGIDPSYSLDQLREEND AIVLAVGATKPRDLPVPGRNLSGVHFAMEFLHANSKSLLDSNLQDGNYISAKGKKVVV IGGGDTGTDCIGTSIRHGCSSIVNLELLPQPPRTRAPGNPWPQWPRIFRVDYGHQEAA AKFGRDPRSYEVLTKRFVGDENGTLKGLEVVRVRWEKDASGKFQFKEVEGSVEIIEAD LVLLAMGFLGPESTVADKLGLEQDNRSNFKAEYGRFATNVNGVFAAGDCRRGQSLVVW AISEGRQAAAQVDKYLTRKDEDVSVDGESQKDLVKRHEDLAQRQQTVMT" CDS complement(join(27641421..27641708,27642081..27642348, 27642566..27642871,27643102..27643370,27643470..27643685, 27644045..27645646,27645814..27645975,27646257..27646411, 27646788..27647657,27647825..27648294,27648386..27648456, 27648572..27648915,27648999..27649178,27649355..27649458, 27650125..27650234,27650717..27650813,27650911..27651011, 27651219..27651371,27651770..27651883,27652158..27652259)) /locus_tag="TCM_015379" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NADH-dependent glutamate synthase 1 isoform 2" /protein_id="EOY23509.1" /db_xref="Phytozome:GSVIVT01038714001" /db_xref="TAIR:AT5G53460.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LV03" /translation="MLIRMSHRGACGCETNTGDGAGILVALPHDFYKEVARDVGFEMP PSGEYGVGMFFLPTSESRREESKNVFTKVAESLGHRVLGWRSVPTDNSGLGNAALQTE PVIEQVFLTPTPRSKADLEQQMYILRRVSMVAIRAALNLQHGGVRDFYICSLSSRTVV YKGQLKPDQLQNYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRVLGHNGEIN TLRGNVNWMKAREGLLKCKELGLSKNEMKKLLPIVDASSSDSGAFDGVLELLVRAGRS LPEAVMMMIPEAWQNDKNMDPHRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRN GLRPGRFYVTHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKHTVVDDDAL KQQYSLARPYGEWLESQKIELNNIVDSVQESERVTPAIAGAIPASNDDDNMEHMGIHG LLAPLKAFGYTVEALEMLLLPMAKDGTEALGSMGNDTPLAVMSNREKLTFEYFKQMFA QVTNPPIDPIREKIVTSMECMIGPEGDLTETTEEQCHRLSLKGPLLSVEETEAIKKMN YRGWRSKVLDITYSKDRGRKGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAV SSLLAVGAVHHHLVKKLERTRVGLIVESAEPREVHHFCTLVGFGADAICPYLAIEAIW RLQVDGKIPPKSSGEFYSKHELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEAL GLSSEVIEKCFAGTPSRVEGATFEMLARDALHLHELAFPSRALAPGSAEAVALPNPGD YHWRKGGEVHLNDPLAIAQLQEAARSNSVAAYKEYAKRIHELNKSCNLRGMLKFKEAG VKIPLDEVEPASEIVKRFCTGAMSYGSISLEAHSTLAIAMNRIGGKSNTGEGGEQPSR MEPLPDGLMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKV IGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIHDLKNSNPSARISVKLVSEAGVG VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRT VLQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPV LREKFAGEPEHVINFFFMLAEEVREIMSQLGFRTLNEMVGRSDMLEVDKEVLRNNEKL QNIDLSLLLRPAADIRPEAAQYCIQKQDHGLDMALDQKLIKLSKAALEKGLPVYIETP ICNVNRAVGTMLSHEVTKRYHLAGLPAGTIHIKLSGSAGQSLGSFMCPGIMLELEGDS NDYVGKGLSGGKIVVYPPKGSRFDPKENIVIGNVALYGATSGEAYFNGMAAERFCVRN SGAKAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFQSRCNPE LVDLDKVEEEEDIMTLKMMIQQHQRHTNSQLAREVLADFENLLPKFIKVFPRDYKRVL AKVKEEEASKEALERAAKEAEERDEAELVEKDAFEELKKLAANLMNEESSQEGEAKPV KRPSRVSDAVKHRGFVAYEREGVQYRNPNVRMNDWKEVMEESKPGPLLKTQSARCMDC GTPFCHQENSGCPLGNKIPEFNELVYQNRWREALDRLLETNNFPEFTGRVCPAPCEGS CVLGIIENPVSIKSIECAIIDKAFEEGWMVPRPPLKRTGKSIAIVGSGPSGLAAADQL NRMGHSVTVYERADRIGGLMMYGVPNMKADKVDVVQRRVNLMAEEGVKFVVNANVGID PSYSLDQLREENDAIVLAVGATKPRDLPVPGRNLSGVHFAMEFLHANSKSLLDSNLQD GNYISAKGKKVVVIGGGDTGTDCIGTSIRHGCSSIVNLELLPQPPRTRAPGNPWPQWP RIFRVDYGHQEAAAKFGRDPRSYEVLTKRFVGDENGTLKGLEVVRVRWEKDASGKFQF KEVEGSVEIIEADLVLLAMGFLGPESVSIVITPFL" mRNA complement(join(<27641461..27641708,27642081..27642348, 27642566..27642871,27643102..27643370,27643470..27643685, 27644045..27645646,27645814..27645975,27646257..27646411, 27646788..27647657,27647825..27648294,27648386..27648456, 27648572..27648915,27648999..27649178,27649355..27649458, 27650125..27650234,27650717..27650813,27650911..27651011, 27651219..27651371,27651770..27651883,27652158..27652277, 27652390..27653321)) /locus_tag="TCM_015379" /product="NADH-dependent glutamate synthase 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30169.m006499" /inference="similar to AA sequence:Phytozome:GSVIVT01038714001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc336t53; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc336t53; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc350t22_C2" CDS complement(join(<27641463..27641708,27642081..27642348, 27642566..27642871,27643102..27643370,27643470..27643685, 27644045..27645646,27645814..27645975,27646257..27646411, 27646788..27647657,27647825..27648294,27648386..27648456, 27648572..27648915,27648999..27649178,27649355..27649458, 27650125..27650234,27650717..27650813,27650911..27651011, 27651219..27651371,27651770..27651883,27652158..27652277, 27652390..27652785)) /locus_tag="TCM_015379" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="NADH-dependent glutamate synthase 1 isoform 3" /protein_id="EOY23510.1" /db_xref="Phytozome:GSVIVT01038714001" /db_xref="TAIR:AT5G53460.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LV03" /translation="MSSASAFNSLLQLRNGSYSLPSLNKSSITPQLNVAPSSRRKTRT ARCSVTKKCSAALEKKFLGTRVLGSGSERLHLWQSDGQGKAPKLRVVVRSSLSGVPQK PLGLYDPSFDKDSCGVGFVAELSGGSSRKTITDALEMLIRMSHRGACGCETNTGDGAG ILVALPHDFYKEVARDVGFEMPPSGEYGVGMFFLPTSESRREESKNVFTKVAESLGHR VLGWRSVPTDNSGLGNAALQTEPVIEQVFLTPTPRSKADLEQQMYILRRVSMVAIRAA LNLQHGGVRDFYICSLSSRTVVYKGQLKPDQLQNYYYADLGNERFTSYMALIHSRFST NTFPSWDRAQPMRVLGHNGEINTLRGNVNWMKAREGLLKCKELGLSKNEMKKLLPIVD ASSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPHRKALYEYFSALMEP WDGPALISFTDGRYLGATLDRNGLRPGRFYVTHSGRVIMASEVGVVDIPPEDVLRKGR LNPGMMLLVDFEKHTVVDDDALKQQYSLARPYGEWLESQKIELNNIVDSVQESERVTP AIAGAIPASNDDDNMEHMGIHGLLAPLKAFGYTVEALEMLLLPMAKDGTEALGSMGND TPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGDLTETTEEQC HRLSLKGPLLSVEETEAIKKMNYRGWRSKVLDITYSKDRGRKGLEETLDRICAEARDA IKEGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHHLVKKLERTRVGLIVESAEPREVHH FCTLVGFGADAICPYLAIEAIWRLQVDGKIPPKSSGEFYSKHELVKKYFKASNYGMMK VLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVEGATFEMLARDALHLHEL AFPSRALAPGSAEAVALPNPGDYHWRKGGEVHLNDPLAIAQLQEAARSNSVAAYKEYA KRIHELNKSCNLRGMLKFKEAGVKIPLDEVEPASEIVKRFCTGAMSYGSISLEAHSTL AIAMNRIGGKSNTGEGGEQPSRMEPLPDGLMNPKRSAIKQVASGRFGVSSYYLTNADE LQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIH DLKNSNPSARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGL PWELGLAETHQTLVANDLRGRTVLQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLG CIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEEVREIMSQLGFRTLN EMVGRSDMLEVDKEVLRNNEKLQNIDLSLLLRPAADIRPEAAQYCIQKQDHGLDMALD QKLIKLSKAALEKGLPVYIETPICNVNRAVGTMLSHEVTKRYHLAGLPAGTIHIKLSG SAGQSLGSFMCPGIMLELEGDSNDYVGKGLSGGKIVVYPPKGSRFDPKENIVIGNVAL YGATSGEAYFNGMAAERFCVRNSGAKAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAG MSGGIAYVLDVDGKFQSRCNPELVDLDKVEEEEDIMTLKMMIQQHQRHTNSQLAREVL ADFENLLPKFIKVFPRDYKRVLAKVKEEEASKEALERAAKEAEERDEAELVEKDAFEE LKKLAANLMNEESSQEGEAKPVKRPSRVSDAVKHRGFVAYEREGVQYRNPNVRMNDWK EVMEESKPGPLLKTQSARCMDCGTPFCHQENSGCPLGNKIPEFNELVYQNRWREALDR LLETNNFPEFTGRVCPAPCEGSCVLGIIENPVSIKSIECAIIDKAFEEGWMVPRPPLK RTGKSIAIVGSGPSGLAAADQLNRMGHSVTVYERADRIGGLMMYGVPNMKADKVDVVQ RRVNLMAEEGVKFVVNANVGIDPSYSLDQLREENDAIVLAVGATKPRDLPVPGRNLSG VHFAMEFLHANSKSLLDSNLQDGNYISAKGKKVVVIGGGDTGTDCIGTSIRHGCSSIV NLELLPQPPRTRAPGNPWPQWPRIFRVDYGHQEAAAKFGRDPRSYEVLTKRFVGDENG TLKGLEVVRVRWEKDASGKFQFKEVEGSVEIIEADLVLLAMGFL" mobile_element complement(27659591..27660014) /note="source:scaffold_5_CACTA_0614 95 404" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27660401..27661462 /note="source:CACAO_on_E683_scaffold_9 1193 2307" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(27667654..27669173) /locus_tag="TCM_015380" /note="dbxref CacaoGD:Thecc1EG015380" mRNA complement(join(27667654..27668206,27668498..27669173)) /locus_tag="TCM_015380" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.68 coverage" CDS complement(join(27668090..27668206,27668498..27668596)) /locus_tag="TCM_015380" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23512.1" /translation="MIRHLFLLHCDKPNTYTELADDINFTPKARGVHVLANMTSKPLA VTVKISVEGRKEETKVNESNCTRISRK" gene complement(27669368..27671502) /locus_tag="TCM_015381" /note="dbxref CacaoGD:Thecc1EG015381" mRNA complement(join(27669368..27669728,27669931..27669989, 27670388..27670505,27670885..27670958,27671251..27671304, 27671392..27671502)) /locus_tag="TCM_015381" /product="Got1/Sft2-like vescicle transport protein family" /inference="alignment:exonerate-protein:2:frave:gene12857" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001661t1" /inference="similar to AA sequence:Phytozome:Sb03g001620.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03320t00001" CDS complement(join(27669650..27669728,27669931..27669989, 27670388..27670505,27670885..27670958,27671251..27671304, 27671392..27671496)) /locus_tag="TCM_015381" /note="paralog of Thecc1EG001661t1" /codon_start=1 /product="Got1/Sft2-like vescicle transport protein family" /protein_id="EOY23513.1" /db_xref="Phytozome:Sb03g001620.1" /db_xref="TAIR:AT5G24170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2D4L1" /translation="MWKVKEYMSGGDEEERAESFLVEESEGFCSLSPTQRMYAFAACL LSGLVLMFLSLIVFVKPIKFALLFTFGNVLAVGSTAFLMGPEQQLRMMFDSVRLYATA IYIGFVVLALICALWIQSKILTLLAIICEICALIWYCLSYIPFARRIVSDLMIRFCDT EL" gene 27671729..27677850 /locus_tag="TCM_015383" /note="dbxref CacaoGD:Thecc1EG015383" mRNA join(27671729..27672084,27672177..27672290, 27672484..27672588,27672713..27672855,27672988..27673084, 27673606..27673770,27674357..27674428,27674961..27675119, 27675275..27675352,27676049..27676177,27676546..27676692, 27677075..27677850) /locus_tag="TCM_015383" /product="Splicing factor-related" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g41530.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s01920.3" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04807t00001" CDS join(27671911..27672084,27672177..27672290, 27672484..27672588,27672713..27672855,27672988..27673084, 27673606..27673770,27674357..27674428,27674961..27675119, 27675275..27675352,27676049..27676177,27676546..27676692, 27677075..27677221) /locus_tag="TCM_015383" /codon_start=1 /product="Splicing factor-related" /protein_id="EOY23514.1" /db_xref="Phytozome:POPTR_0015s01920.3" /db_xref="TAIR:AT5G06160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RII3" /translation="MSSTLLEVTRAAHEDVERLERLIVKDLQNEPPSGKDRLYQSHRV RNNIETIIATSEKLIEIYEDKDNARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHR KHPAARVVDANEEYEALLKEEPAVEFSGEEALGRYLDLHELFNQYINSKFGAKIEYSA YLDVFSQPHNISWKLKSTRQYREYMQNLLEYLIYFFQRTEPLQDLDRIFSKVEAEFEE QWADGQVQGWEKQGQENGDDPAQHTMIDLDYYSTVEELMEVGPEKLKEALAALGLKTG GTVQQRAERLFLTKHTPFEKLDKKHFARGSRKPEQNGSTAVPQDINSLKDVALMEAKM KKLCDLLSKTIEQTKENVVKKQALTYEEMEQEREEEETQVDTESDEEDQQIYNPLKLP MGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPN TKNFNEITNIAEAQELWGKIQERQGLNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGL I" gene complement(27677853..27692084) /locus_tag="TCM_015384" /note="dbxref CacaoGD:Thecc1EG015384" mRNA complement(join(27677853..27678886,27679159..27679221, 27679444..27679579,27680007..27680083,27680160..27680240, 27680695..27680782,27680865..27680971,27681134..27681220, 27681347..27681529,27681715..27681831,27681924..27682008, 27682079..27682122,27682211..27682543,27683050..27683589, 27686690..27687226,27687480..27687568,27692047..27692084)) /locus_tag="TCM_015384" /product="OBP3-responsive gene 1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene12857" /inference="similar to AA sequence:Phytozome:GSVIVT01038710001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7738t3" mRNA complement(join(27677961..27678886,27679159..27679221, 27679444..27679579,27680007..27680083,27680160..27680240, 27680695..27680782,27680865..27680971,27681134..27681220, 27681347..27681529,27681715..27681831,27681924..27682002, 27682079..27682122,27682211..27682543,27683050..27683199)) /locus_tag="TCM_015384" /product="OBP3-responsive gene 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene12857" /inference="similar to AA sequence:Phytozome:GSVIVT01038710001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1420t12_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7738t3" CDS complement(join(27678239..27678886,27679159..27679221, 27679444..27679579,27680007..27680083,27680160..27680240, 27680695..27680782,27680865..27680971,27681134..27681220, 27681347..27681529,27681715..27681831,27681924..27682002, 27682079..27682122,27682211..27682525)) /locus_tag="TCM_015384" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="OBP3-responsive gene 1 isoform 2" /protein_id="EOY23516.1" /db_xref="Phytozome:GSVIVT01038710001" /db_xref="TAIR:AT5G53450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LV04" /translation="MALCGFSINPSLESVEVWHFNGNLSKTLIRPSCLRLNRKSPCSA RRQFQEVRCSSLRKAVSPMESEENAPTATPISGEDEPGHVARFKMSDFKVLDHVSVGL AGRADEVVFEAVVKDSGSPLYNSRVVLRRLTSARAQRRGRRAIEVLKKLVHRRILYHS YSMQVYGCILSHTSGAQSSFTLVHGYHGSFSLRHWLQQSDWLPTLEATLALDEESVRR VGDDSVGGPAVTRQLRLIRILMRDLLIGVNYLHSHGIAHTELRLENVHISPVDRHIKV GILGNAADFYDNGPNGSALDGNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFAKL KSFLMKGNDPSCLREFLLPILTRNSPNGNVGLQMLDRNWGAGWNLLSLLLAVRPSKRI SCLDALRHPFLCGPRWRVVPSMDIIRWGLGSTAVRITEEYIYRQSQTGRLAHFIELME MLNPHSRPKNWLELLPGKWRLLYSTGRHIGLTFRQPPVRILIGDAHLTIVKASKLNTS LSILSEIGFTVMMGHDWPHDKSGISGKLQVNSLTSLKAGRRLYLKEKATEGFSLRQSN SEDSLFGKLSSRKWRKAIPLKEFPSSLPVAKLLPDDIEVSMTLNDPLTQNVDVARNIV KEIRTQVPPEMFELSNLVCGTYVDSRMLVLRSVNGSALIFTRSCADESCR" CDS complement(join(27678239..27678886,27679159..27679221, 27679444..27679579,27680007..27680083,27680160..27680240, 27680695..27680782,27680865..27680971,27681134..27681220, 27681347..27681529,27681715..27681831,27681924..27682008, 27682079..27682122,27682211..27682525)) /locus_tag="TCM_015384" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="OBP3-responsive gene 1 isoform 1" /protein_id="EOY23515.1" /db_xref="Phytozome:GSVIVT01038710001" /db_xref="TAIR:AT5G53450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LV04" /translation="MALCGFSINPSLESVEVWHFNGNLSKTLIRPSCLRLNRKSPCSA RRQFQEVRCSSLRKAVSPMESEENAPTATPISGEDEPGHVARFKMSDFKVLDHVSVGL AGRADEVVFEAVVKDSGSCSPLYNSRVVLRRLTSARAQRRGRRAIEVLKKLVHRRILY HSYSMQVYGCILSHTSGAQSSFTLVHGYHGSFSLRHWLQQSDWLPTLEATLALDEESV RRVGDDSVGGPAVTRQLRLIRILMRDLLIGVNYLHSHGIAHTELRLENVHISPVDRHI KVGILGNAADFYDNGPNGSALDGNMDRRQMMIAFDMRCVGFMMAKMVLRELMDPLIFA KLKSFLMKGNDPSCLREFLLPILTRNSPNGNVGLQMLDRNWGAGWNLLSLLLAVRPSK RISCLDALRHPFLCGPRWRVVPSMDIIRWGLGSTAVRITEEYIYRQSQTGRLAHFIEL MEMLNPHSRPKNWLELLPGKWRLLYSTGRHIGLTFRQPPVRILIGDAHLTIVKASKLN TSLSILSEIGFTVMMGHDWPHDKSGISGKLQVNSLTSLKAGRRLYLKEKATEGFSLRQ SNSEDSLFGKLSSRKWRKAIPLKEFPSSLPVAKLLPDDIEVSMTLNDPLTQNVDVARN IVKEIRTQVPPEMFELSNLVCGTYVDSRMLVLRSVNGSALIFTRSCADESCR" mobile_element complement(27683665..27684150) /note="source:INTACT135F_F90_scaffold_2-int 13527 13999" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27683668..27684205) /note="source:CACAO_M_E4753_F17_scaffold_2 7254 7818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27684151..27684877) /note="source:scaffold_2_CACTA_0244 13515 14700" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27685096..27686731 /note="source:CACAO_hAT_E654_scaffold_2 1 1661" /mobile_element_type="transposon:TIR/hAT" mobile_element 27686720..27687770 /note="source:CACAO_hAT_E654_scaffold_2 4412 5456" /mobile_element_type="transposon:TIR/hAT" gene 27691991..27701367 /locus_tag="TCM_015385" /note="dbxref CacaoGD:Thecc1EG015385" mRNA join(27691991..27692374,27692458..27693017, 27695679..27696660,27696923..27698303,27698395..27698478, 27699256..27701367) /locus_tag="TCM_015385" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038709001" /inference="similar to AA sequence:ricco:30169.m006495" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b014863t1a3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc7t1" mRNA join(27692015..27692309,27692458..27693017, 27695679..27696660,27696923..27698303,27698395..27698478, 27699256..27701367) /locus_tag="TCM_015385" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038709001" /inference="similar to AA sequence:ricco:30169.m006495" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc7t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc7t1" mRNA join(27692015..27692309,27692458..27693017, 27695679..27696660,27696923..27698303,27698395..27698882) /locus_tag="TCM_015385" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038709001" /inference="similar to AA sequence:ricco:30169.m006495" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc7t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc7t1" CDS join(27692308..27692309,27692458..27693017, 27695679..27696660,27696923..27698303,27698395..27698478, 27699256..27699906) /locus_tag="TCM_015385" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006495" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23517.1" /db_xref="TAIR:AT5G53440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RII1" /translation="MVFFEFSYLASVMPRSSRHKSSKHSSRDARDYSDSEKDSGLKEK EKKTKEESGGRVSKESGSCEKRKLDTKETSKDLWSSGNGEYVEEYGSLKRRKDKADDG VSDRWNGGEDDGRGEKKSKASSESKSKRREEVEGDDAKKSKSEGKHRESSRKEERERE KKGKESKGDRLIESEEHRTVKQSAEKTELDVPDRLLSPESESQLERRLRKRRDDSGDG DKHQEDNGDILDRQVSLRNETGKDGRTKDEKHKDERYRDKYREDTDRDDKYRDDKLKD ERPARDHANSKSSEKHARDEKDAVEVRQKKSKVQDGDRERDHDHDRERDRDRERERDR DRDRDRDRERDRDLDLGHDRERERYRDRDHYRERGRNRDHDRDRDHDREWDQDRDHDR DRERERRDSDRDKDRDRDRDRGRDVDHDHNGLHLDERSGRYKDSRGRKRSPDDRDDGI DTKSRGIKAHYSDIENKSLTSGRVEFDADRGRSQSRQANVDSTVGSNKRRTSPSPSSH VSTDEYRHLKQEDSKYRDSMTEQRSRAASSREVTSFSGASERGAKYRSMEKSSRLDEG HSGELPIERSSSSKASPMNMMERSPSSTSLERRYMNRSGVRRSLDIEEAAWRSSASIG GRELSSAEDRLSRDLPPEKPLLDESSQADSAFYNRAGQGNSSLIPQPPGFRAGIGSPS FMGSLEEDNRINISGRYKRSGDLNVGRGQANAWRGTPNWPSPVPNGFIPFQPGPPHGG YQAMMPQFPSPSLFGVRPAMEINHSGIPFHIPDAERFSNHLRPMGWQNMMDGSGPPHM HGWDGNNVVFRDEAHMYGGPEWDQNRHPMNGRGWDTSSDVWKGQNGDADLPSTSQKED HPVQAPPDDVYDGQERQRSQHESSHSGVQVKSLEIRSDVVSPVKESSRSSPEIPHEKA PDSSKISSDKDGAHSCQVYLSKLDISTELAGSELYDQCMSLLNAERSKDLVKDVTMLV DLKNGGRAVQKASIAVLRPPLIPATNVSVFQKAMDLYKKQRLQMGAMLNDNGGMLKFI SASNQEKEQSSDHVVEDTEEQALISDAEMLDVAMPNSDQQKEEAVPTAAQENKEQPVS IQSGELPDHMDSLSPEKSELPNTDLGHRSPEVLKPVLNGIEAEEMESLEADNASEAVV LSTDVENSNEINKTEGDNSVYCGKERQVFDDAISGSLFLSDGSPKVSGDLIPGSNESE FVILSRIHHSPESTH" CDS join(27692308..27692309,27692458..27693017, 27695679..27696660,27696923..27698303,27698395..27698565) /locus_tag="TCM_015385" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30169.m006495" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY23519.1" /db_xref="TAIR:AT5G53440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RII1" /translation="MVFFEFSYLASVMPRSSRHKSSKHSSRDARDYSDSEKDSGLKEK EKKTKEESGGRVSKESGSCEKRKLDTKETSKDLWSSGNGEYVEEYGSLKRRKDKADDG VSDRWNGGEDDGRGEKKSKASSESKSKRREEVEGDDAKKSKSEGKHRESSRKEERERE KKGKESKGDRLIESEEHRTVKQSAEKTELDVPDRLLSPESESQLERRLRKRRDDSGDG DKHQEDNGDILDRQVSLRNETGKDGRTKDEKHKDERYRDKYREDTDRDDKYRDDKLKD ERPARDHANSKSSEKHARDEKDAVEVRQKKSKVQDGDRERDHDHDRERDRDRERERDR DRDRDRDRERDRDLDLGHDRERERYRDRDHYRERGRNRDHDRDRDHDREWDQDRDHDR DRERERRDSDRDKDRDRDRDRGRDVDHDHNGLHLDERSGRYKDSRGRKRSPDDRDDGI DTKSRGIKAHYSDIENKSLTSGRVEFDADRGRSQSRQANVDSTVGSNKRRTSPSPSSH VSTDEYRHLKQEDSKYRDSMTEQRSRAASSREVTSFSGASERGAKYRSMEKSSRLDEG HSGELPIERSSSSKASPMNMMERSPSSTSLERRYMNRSGVRRSLDIEEAAWRSSASIG GRELSSAEDRLSRDLPPEKPLLDESSQADSAFYNRAGQGNSSLIPQPPGFRAGIGSPS FMGSLEEDNRINISGRYKRSGDLNVGRGQANAWRGTPNWPSPVPNGFIPFQPGPPHGG YQAMMPQFPSPSLFGVRPAMEINHSGIPFHIPDAERFSNHLRPMGWQNMMDGSGPPHM HGWDGNNVVFRDEAHMYGGPEWDQNRHPMNGRGWDTSSDVWKGQNGDADLPSTSQKED HPVQAPPDDVYDGQERQRSQHESSHSGVQVKSLEIRSDVVSPVKESSRSSPEIPHEKA PDSSKISSDKDGAHSCQVYLSKLDISTELAGSELYDQCMSLLNAERSKDLVKDVTMLV DLKNGGRAVQKASIAVLRPPLIPATNVSVFQVVIGEEPSHMSAYVLYSFRWSIYVHLH I" CDS join(27692492..27693017,27695679..27696660, 27696923..27698303,27698395..27698478,27699256..27699906) /locus_tag="TCM_015385" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006495" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY23518.1" /db_xref="TAIR:AT5G53440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RII1" /translation="MPRSSRHKSSKHSSRDARDYSDSEKDSGLKEKEKKTKEESGGRV SKESGSCEKRKLDTKETSKDLWSSGNGEYVEEYGSLKRRKDKADDGVSDRWNGGEDDG RGEKKSKASSESKSKRREEVEGDDAKKSKSEGKHRESSRKEEREREKKGKESKGDRLI ESEEHRTVKQSAEKTELDVPDRLLSPESESQLERRLRKRRDDSGDGDKHQEDNGDILD RQVSLRNETGKDGRTKDEKHKDERYRDKYREDTDRDDKYRDDKLKDERPARDHANSKS SEKHARDEKDAVEVRQKKSKVQDGDRERDHDHDRERDRDRERERDRDRDRDRDRERDR DLDLGHDRERERYRDRDHYRERGRNRDHDRDRDHDREWDQDRDHDRDRERERRDSDRD KDRDRDRDRGRDVDHDHNGLHLDERSGRYKDSRGRKRSPDDRDDGIDTKSRGIKAHYS DIENKSLTSGRVEFDADRGRSQSRQANVDSTVGSNKRRTSPSPSSHVSTDEYRHLKQE DSKYRDSMTEQRSRAASSREVTSFSGASERGAKYRSMEKSSRLDEGHSGELPIERSSS SKASPMNMMERSPSSTSLERRYMNRSGVRRSLDIEEAAWRSSASIGGRELSSAEDRLS RDLPPEKPLLDESSQADSAFYNRAGQGNSSLIPQPPGFRAGIGSPSFMGSLEEDNRIN ISGRYKRSGDLNVGRGQANAWRGTPNWPSPVPNGFIPFQPGPPHGGYQAMMPQFPSPS LFGVRPAMEINHSGIPFHIPDAERFSNHLRPMGWQNMMDGSGPPHMHGWDGNNVVFRD EAHMYGGPEWDQNRHPMNGRGWDTSSDVWKGQNGDADLPSTSQKEDHPVQAPPDDVYD GQERQRSQHESSHSGVQVKSLEIRSDVVSPVKESSRSSPEIPHEKAPDSSKISSDKDG AHSCQVYLSKLDISTELAGSELYDQCMSLLNAERSKDLVKDVTMLVDLKNGGRAVQKA SIAVLRPPLIPATNVSVFQKAMDLYKKQRLQMGAMLNDNGGMLKFISASNQEKEQSSD HVVEDTEEQALISDAEMLDVAMPNSDQQKEEAVPTAAQENKEQPVSIQSGELPDHMDS LSPEKSELPNTDLGHRSPEVLKPVLNGIEAEEMESLEADNASEAVVLSTDVENSNEIN KTEGDNSVYCGKERQVFDDAISGSLFLSDGSPKVSGDLIPGSNESEFVILSRIHHSPE STH" gene 27702390..27703063 /locus_tag="TCM_015386" /note="dbxref CacaoGD:Thecc1EG015386" mRNA 27702390..27703063 /locus_tag="TCM_015386" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015394t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 27702547..27702864 /locus_tag="TCM_015386" /note="paralog of Thecc1EG015394t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23520.1" /translation="MQVRLLEPSLEETTLNFRRWNMVKSSMYVLTTMWNSVVRNNQLE IDDVVQLWSFRVESRLCFALVKVDDVQKGSEEWVRHSKSNENGASSSHQEEGHGGCRR ISC" gene complement(27703236..27705703) /locus_tag="TCM_015387" /note="dbxref CacaoGD:Thecc1EG015387" mRNA complement(join(27703236..27704102,27705397..27705703)) /locus_tag="TCM_015387" /product="Uncharacterized protein" /note="quality class is weak, express is medium, homology is ortholog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(join(27703858..27704102,27705397..27705550)) /locus_tag="TCM_015387" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23521.1" /translation="MFKGVHKRDTNQLKRKCPEFPKNIQSMCLCVLLNIIFRIHMKTL LFTNIWTTPSTGWFKLNTDGAARDCPGMLGIGGVLRDNSGAVKIIFSEARGRGMPVLL RFLTIREALVGVTGWGLLLKAILKTQSIGS" gene complement(27706160..27710156) /locus_tag="TCM_015388" /note="dbxref CacaoGD:Thecc1EG015388" mRNA complement(join(27706160..27706758,27707197..27707515, 27707760..27707886,27708149..27708205,27708324..27708489, 27708655..27708770,27708831..27708864,27708956..27709031, 27709678..27710156)) /locus_tag="TCM_015388" /product="Gamma-irradiation and mitomycin c induced 1-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015420t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038555001" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7718t1" CDS complement(join(27706373..27706758,27707197..27707515, 27707760..27707886,27708149..27708205,27708324..27708489, 27708655..27708770,27708831..27708864,27708956..27709031, 27709678..27709779)) /locus_tag="TCM_015388" /note="paralog of Thecc1EG015420t1" /codon_start=1 /product="Gamma-irradiation and mitomycin c induced 1-like protein" /protein_id="EOY23522.1" /db_xref="Phytozome:GSVIVT01038555001" /db_xref="TAIR:AT5G24280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H783" /translation="MLKLCLTFPKNNMIQENLFSVAETDAGFNPTPSKADLATINFFS IALKNFGSRHVEKEKDVDVEIYRGGGHYDEEIGSGEDQPVLVVGPLNKKALGISSDGK IIYKQFDVLRVHKILKRKGVFWESGQRIKVLKGACAGFHKKNVYATLEYFLIEEFQGD FVGKQRSSDYMQMTCLCICFLSFFHLLCLAIDDTDWDCQFEKQSQKAPTRIDLLNAKQ CQELEVDGALPADATVHAGLIPPGVFVAVLRPKSFGSSSASNDLDQDILKINLEMSME VNFRRTKNHQDVKHICSGHITPSFCKGFHGLYVFSLGCKFPRLFQEAGIYSFFSVVTF FLSTNFALGSWDRVSSCFPIIPIEGLPVDVTKMKPFLSSDNLVYKPTNMEVIFYASAL PFWLFLMLQDVMIESNEMGSMWPHYAATLMIYLNDESVSISVECQDALLYICHLHVKA LLEKQIFIVL" gene complement(27710299..27723422) /locus_tag="TCM_015389" /note="dbxref CacaoGD:Thecc1EG015389" mRNA complement(join(27710299..27710499,27711187..27711253, 27711468..27711566,27712853..27712893,27713015..27713123, 27713243..27713420,27713886..27714205,27714459..27714566, 27714655..27714723,27714823..27714879,27715060..27715163, 27715327..27715536,27715631..27715706,27716353..27716421, 27717351..27717479,27717542..27717603,27717722..27717820, 27719251..27719309,27720281..27720348,27720705..27720784, 27720887..27720933,27722028..27722111,27722717..27722775, 27722841..27722927,27723097..27723422)) /locus_tag="TCM_015389" /product="Gamma-irradiation and mitomycin c induced 1-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015420t3" /inference="similar to AA sequence:Phytozome:GSVIVT01038555001" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7720t1" CDS complement(join(27710393..27710499,27711187..27711253, 27711468..27711566,27712853..27712893,27713015..27713123, 27713243..27713420,27713886..27714205,27714459..27714566, 27714655..27714723,27714823..27714879,27715060..27715163, 27715327..27715536,27715631..27715706,27716353..27716421, 27717351..27717479,27717542..27717603,27717722..27717820, 27719251..27719309,27720281..27720348,27720705..27720784, 27720887..27720905)) /locus_tag="TCM_015389" /note="paralog of Thecc1EG015420t3" /codon_start=1 /product="Gamma-irradiation and mitomycin c induced 1-like protein" /protein_id="EOY23523.1" /db_xref="Phytozome:GSVIVT01038555001" /db_xref="TAIR:AT5G24280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H783" /translation="MFKGFYEALFCDNAALFGHVWIWRTYGIYASRETDGGIRDASED EIRNLLMRALQSCNMELLDGRSQSCHRWHDAGGRAAITNLLSCSGPEFTILLHFSLKR ENVATKGSKASEGTNARLKCIYFPIHQGKENIERILEKLDAEGCGVGDNYENFSCIPI SCLGRLLPDARWNMIQENSFLVAETDAGFNPTPLKTDLVHHNPFSIALKNFGCRHVEK EKDVDVEICRGGKQLTFLQLEREYQDWLLQMQDSYEKEIRSGADQPVLVVGPLNKKAL GISYDGNIIYKQFDVIRVRKILKRKGVLWESGQRINILKGACAGFHKNNEKLVLYAAD LLVQLLSKFLDANASFDIRNSLSLPVSVINSGKCLAIDDTDWDCQLEKQCQKAPSRID LLNVKLCQELKALPADATLQAGLVPPKEIVAVLHPRSFGSSSASNDLDQKEILKINLE MSMEVNFRRTKNHQDVKHIYSGRITPSSCKGFNGLYVFPLGASSHTCFKKQAYIPFYS LLVGSCFPFISIACYDIYDNWMPFSSIPDFKIKLIMNEGLLVDVTKMKPFLSSDKLVL NIEHVMIESNELDSIGPHYAATLMIYSKDESVSISVECQVTPGALRNAKACPEMFDAY GNHVAEGVEVQFHLDGFVIQEHLGSKYKVDDQGCIDRGCLLKVTAGYGKPEHCIAGFI LEDLAFEVVDSQNSGLSFNSLDKFCIG" mobile_element complement(27718408..27718469) /note="source:scaffold_6_CACTA_0712 1441 1502" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27718416..27718485) /note="source:CACAO_M_E44848_F172_scaffold_6 1901 1961" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27723517..27727591 /locus_tag="TCM_015393" /note="dbxref CacaoGD:Thecc1EG015393" mRNA join(27723517..27723871,27725053..27726037, 27727235..27727591) /locus_tag="TCM_015393" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g05870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015394t1" /inference="similar to AA sequence:frave:gene12899" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS join(27725227..27726037,27727235..27727431) /locus_tag="TCM_015393" /note="dbxref frave:gene12899; paralog of Thecc1EG015394t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23524.1" /translation="MNLLSIDDFKNSKLDPNCSIFDYLLEVTRVAKEKLKKENFNIKQ EEVDFKHGKNLDKNSDLGRKLESKLKQEEGLKLRRSKIDKPLWPNPPPDLPENFKEHI VSKMGGSDWLLVIQKPVFFSDVNPGANRLSIPFSQIQRHEFLCKKEVEYLNDKKDMQV RLVEPSLEETTLSFRRWNMKNSSMYVLTKTWNSVVKNNQLKIDDVVQLWSFRVESSLC FALVKVRDVRQGNEEWVRHNETGASLSHQEEGHGGWRRMSCEDGSGASCSRDESHGPL QEAEATNVNGGMLKFISEQSSDHVVEETAKPVLISDAEMLDAEIAEFRPAERRSCSNC C" gene 27727158..27728910 /locus_tag="TCM_015394" /note="dbxref CacaoGD:Thecc1EG015394" mRNA join(27727158..27727595,27728020..27728910) /locus_tag="TCM_015394" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g02670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015393t1" /inference="similar to AA sequence:frave:gene12899" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS join(27727476..27727595,27728020..27728793) /locus_tag="TCM_015394" /note="dbxref frave:gene12899; paralog of Thecc1EG015393t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23525.1" /translation="MDSLSPEKSEVPNADFGDRSPELPKPVLNGNEAQEVESQRVARV GRKKLKKKNLKIKQGEEKKRQGLVFKLKYFSNNAEEAINFKLGKKLIKNGGLKRKLKS NKEEEGGLKLKRSKIGIPSCSNPPPDLPENFKEHIVGKMGGSDWLLVIQKPIFFSDVN PRASRFSIPFSQIQSHEFLYKKEAEDLNDEKSMEVSLLEPSLEETTLSFRRWNMVKSS MYVLTTMWNSVVKNNQLEIDDVVQLWSFRVESCLCFALVKVDDVQKGSEEWVRHSKSN ENGASSSHQEEGHGGCRRISC" gene complement(27729127..27739744) /locus_tag="TCM_015395" /note="dbxref CacaoGD:Thecc1EG015395" mRNA complement(join(27729127..27729629,27729718..27729818, 27729972..27730046,27730397..27730483,27731255..27731344, 27731422..27731478,27731597..27731683,27732088..27732301, 27732399..27732463,27733272..27733376,27734075..27734220, 27734491..27734615,27735068..27735167,27735267..27735372, 27735790..27735925,27736375..27736467,27736666..27736757, 27736867..27736935,27737033..27737101,27737193..27737321, 27737727..27737940,27738023..27738078,27738190..27739744)) /locus_tag="TCM_015395" /product="SET domain protein 16 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005153t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02120.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc32t12" mRNA complement(join(27729202..27729629,27729718..27729818, 27729972..27730046,27730397..27730422,27732088..27732301, 27732399..27732463,27733272..27733376,27734075..27734220, 27734491..27734615,27735068..27735167,27735267..27735372, 27735790..27735925,27736375..27736467,27736666..27736757, 27736867..27736935,27737033..27737101,27737193..27737321, 27737727..27737940,27738023..27738078,27738190..27739666)) /locus_tag="TCM_015395" /product="SET domain protein 16 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005153t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02120.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc18t15; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc32t12" mRNA complement(join(27729202..27729629,27729718..27730046, 27730397..27730422,27732088..27732301,27732399..27732463, 27733272..27733376,27734075..27734220,27734491..27734615, 27735068..27735167,27735267..27735372,27735790..27735925, 27736375..27736467,27736666..27736757,27736867..27736935, 27737033..27737101,27737193..27737321,27737727..27737940, 27738023..27738078,27738190..27739666)) /locus_tag="TCM_015395" /product="SET domain protein 16 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005153t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02120.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc18t10; alternateUTRof:Thecc1EG015395t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc32t12" CDS complement(join(27729539..27729629,27729718..27729818, 27729972..27730046,27730397..27730483,27731255..27731344, 27731422..27731478,27731597..27731683,27732088..27732301, 27732399..27732463,27733272..27733376,27734075..27734220, 27734491..27734615,27735068..27735167,27735267..27735372, 27735790..27735925,27736375..27736467,27736666..27736757, 27736867..27736935,27737033..27737101,27737193..27737321, 27737727..27737940,27738023..27738078,27738190..27739155)) /locus_tag="TCM_015395" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005153t1" /codon_start=1 /product="SET domain protein 16 isoform 1" /protein_id="EOY23526.1" /db_xref="Phytozome:POPTR_0012s02120.1" /db_xref="TAIR:AT4G27910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7C9" /translation="MIIKRNLKSQMPSLKRCKLGDSVGEDEDNSGTTRKKQKINGYYP LTLLGEVAAGIIPVSLHRIIASGQAEKAFAASWCTEVSCSPGEVESKSKGSDSSKAKN RTVEIARPPLVRTSRGRVQVLPSRFNDSVIENWKKESKTSLRDYSFEDDDDDDDFECK KDKFSFKTPKTCKQNQKNRRNEEKNGYKGRKYATLCEEDQREAGHGRTFDIRKYSSSL SSLTSVHEQFVDEDEKYANGVGIVDLTAEEQLLRENGERKDGLYGPEDFYSGDIVWAR PGKREPFWPAIVIDPMTQAPEVVLRSCIPEAACVMFFGHSGNENQRDYAWVRRGMIFP FVDFLDRFHEQRELNRCKPSDFQLAMEEAFLAEQGFTEKLIHDINIAAGNPTYDETVL RWVQEATGSNQDQDYHLPNQGLLGKHNDARPCEGCGMILPFKMGKKMKTSTPGGQFLC KTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSHHFKDLGATDY YCPTCKAKFNFELSDSEKWQPKAKSNKNNGQLVLPNKVAVLCCGVEGIYYPSLHLVVC KCGSCGSEKQALSEWERHTGSRERNWRISVKVKGSMLPLEQWMLQLAEYHANATASSK PPKRPSIRERKQKLLAFLREKYEPVHAKWTTERCAVCRWVEDWDYNKIIICNRCQIAV HQECYGARNVRDFTSWVCKACETPEVTRECCLCPVKGGALKPTDVETLWVHVTCAWFQ PEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYYHAMCASRAG YRMELHCLEKNGRQITKMVSYCAYHRAPNPDTVLIIQTPLGVFSAKSLAQNKKKTGSR LISSSRMKVEEVPTVETTNVEPFSAARCRVFKRSNNNRKRTEEEAIAHQVMRPCHHPL STIQSLNEFRVVEEPKDFSSFRERLYHLQRTENDRVCFGRSGIHGWGLFARRNIQEGE MVLEYRGEQVRRSIADLREARYRIEGKDCYLFKISEEVVVDATDKGNIARLINHSCMP NCYARIMSVGDEESRIVLIAKTNVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKF MN" CDS complement(join(27730414..27730422,27732088..27732301, 27732399..27732463,27733272..27733376,27734075..27734220, 27734491..27734615,27735068..27735167,27735267..27735372, 27735790..27735925,27736375..27736467,27736666..27736757, 27736867..27736935,27737033..27737101,27737193..27737321, 27737727..27737940,27738023..27738078,27738190..27739155)) /locus_tag="TCM_015395" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005153t1" /codon_start=1 /product="SET domain protein 16 isoform 2" /protein_id="EOY23527.1" /db_xref="Phytozome:POPTR_0012s02120.1" /db_xref="TAIR:AT4G27910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7C9" /translation="MIIKRNLKSQMPSLKRCKLGDSVGEDEDNSGTTRKKQKINGYYP LTLLGEVAAGIIPVSLHRIIASGQAEKAFAASWCTEVSCSPGEVESKSKGSDSSKAKN RTVEIARPPLVRTSRGRVQVLPSRFNDSVIENWKKESKTSLRDYSFEDDDDDDDFECK KDKFSFKTPKTCKQNQKNRRNEEKNGYKGRKYATLCEEDQREAGHGRTFDIRKYSSSL SSLTSVHEQFVDEDEKYANGVGIVDLTAEEQLLRENGERKDGLYGPEDFYSGDIVWAR PGKREPFWPAIVIDPMTQAPEVVLRSCIPEAACVMFFGHSGNENQRDYAWVRRGMIFP FVDFLDRFHEQRELNRCKPSDFQLAMEEAFLAEQGFTEKLIHDINIAAGNPTYDETVL RWVQEATGSNQDQDYHLPNQGLLGKHNDARPCEGCGMILPFKMGKKMKTSTPGGQFLC KTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSHHFKDLGATDY YCPTCKAKFNFELSDSEKWQPKAKSNKNNGQLVLPNKVAVLCCGVEGIYYPSLHLVVC KCGSCGSEKQALSEWERHTGSRERNWRISVKVKGSMLPLEQWMLQLAEYHANATASSK PPKRPSIRERKQKLLAFLREKYEPVHAKWTTERCAVCRWVEDWDYNKIIICNRCQIAV HQECYGARNVRDFTSWVCKACETPEVTRECCLCPVKGGALKPTDVETLWVHVTCAWFQ PEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYYHAMCASRAG YRMELHCLEKNGRQITKMVSYCAYHRAPNPDTVLIIQTPLGVFSAKSLAQNKKKTGSR LISSSRMKVEEVPTVETTNVEPFSAARCRVFKRSNNNRKTE" CDS complement(join(27730414..27730422,27732088..27732301, 27732399..27732463,27733272..27733376,27734075..27734220, 27734491..27734615,27735068..27735167,27735267..27735372, 27735790..27735925,27736375..27736467,27736666..27736757, 27736867..27736935,27737033..27737101,27737193..27737321, 27737727..27737940,27738023..27738078,27738190..27739155)) /locus_tag="TCM_015395" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005153t1" /codon_start=1 /product="SET domain protein 16 isoform 2" /protein_id="EOY23528.1" /db_xref="Phytozome:POPTR_0012s02120.1" /db_xref="TAIR:AT4G27910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7C9" /translation="MIIKRNLKSQMPSLKRCKLGDSVGEDEDNSGTTRKKQKINGYYP LTLLGEVAAGIIPVSLHRIIASGQAEKAFAASWCTEVSCSPGEVESKSKGSDSSKAKN RTVEIARPPLVRTSRGRVQVLPSRFNDSVIENWKKESKTSLRDYSFEDDDDDDDFECK KDKFSFKTPKTCKQNQKNRRNEEKNGYKGRKYATLCEEDQREAGHGRTFDIRKYSSSL SSLTSVHEQFVDEDEKYANGVGIVDLTAEEQLLRENGERKDGLYGPEDFYSGDIVWAR PGKREPFWPAIVIDPMTQAPEVVLRSCIPEAACVMFFGHSGNENQRDYAWVRRGMIFP FVDFLDRFHEQRELNRCKPSDFQLAMEEAFLAEQGFTEKLIHDINIAAGNPTYDETVL RWVQEATGSNQDQDYHLPNQGLLGKHNDARPCEGCGMILPFKMGKKMKTSTPGGQFLC KTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSHHFKDLGATDY YCPTCKAKFNFELSDSEKWQPKAKSNKNNGQLVLPNKVAVLCCGVEGIYYPSLHLVVC KCGSCGSEKQALSEWERHTGSRERNWRISVKVKGSMLPLEQWMLQLAEYHANATASSK PPKRPSIRERKQKLLAFLREKYEPVHAKWTTERCAVCRWVEDWDYNKIIICNRCQIAV HQECYGARNVRDFTSWVCKACETPEVTRECCLCPVKGGALKPTDVETLWVHVTCAWFQ PEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYYHAMCASRAG YRMELHCLEKNGRQITKMVSYCAYHRAPNPDTVLIIQTPLGVFSAKSLAQNKKKTGSR LISSSRMKVEEVPTVETTNVEPFSAARCRVFKRSNNNRKTE" gene 27739869..27741705 /locus_tag="TCM_015397" /note="dbxref CacaoGD:Thecc1EG015397" mRNA join(27739869..27740428,27740779..27741090, 27741264..27741705) /locus_tag="TCM_015397" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.95 coverage" CDS join(27740980..27741090,27741264..27741482) /locus_tag="TCM_015397" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23529.1" /translation="MVGCSWHFMNCFGLIGNDDGIRFAIFLNFGTKFLQFRKQIWWRL PVGYMGLEMINVNDGLLMVYESVFCVLKRNFGPMRLCDQYRQPVPITWLIFTDQIPAQ RGQPGPS" gene complement(27743500..27744404) /locus_tag="TCM_015398" /note="dbxref CacaoGD:Thecc1EG015398" mRNA complement(join(27743500..27743950,27744027..27744112, 27744226..27744263,27744359..27744404)) /locus_tag="TCM_015398" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc724t7" CDS complement(join(27743761..27743950,27744027..27744112, 27744226..27744261)) /locus_tag="TCM_015398" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23530.1" /translation="MIAKTFNNFVKEYLLGTPESQDQKRIFKSLDCFGETVKVQKYPE FLLMVAELNGHGTSNGRIYCKAISSSSSELTRTVLKATRRLESVAKFPCNYFCTWRGA H" gene complement(27744468..27748322) /locus_tag="TCM_015399" /note="dbxref CacaoGD:Thecc1EG015399" mRNA complement(join(27744468..27745024,27745224..27745370, 27746065..27746568,27748214..27748322)) /locus_tag="TCM_015399" /product="CCT motif family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02130.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s01650.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09136t00001" CDS complement(join(27744917..27745024,27745224..27745370, 27746065..27746568,27748214..27748318)) /locus_tag="TCM_015399" /codon_start=1 /product="CCT motif family protein" /protein_id="EOY23531.1" /db_xref="Phytozome:POPTR_0015s01650.1" /db_xref="TAIR:AT5G53420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L602" /translation="MYAETGLFFPYMQNFCQDFQQFEEFCKTQKPNASMNNLVQTSTI SEYDLGGEGDLFKAPEPIIEEPIVGLDPMTAAISLISCGEDVITSQGLKAADIESIQN EQLLEVLYECEKDLMAQAAIETPLSDVLDIKIPVVKTDENQNQGNKLLCDVPFQKSVS SGCLSSMEWMQGAAIKPSFLDFSGMDFGSVYGMRRAFSEGDIKTLGNGNTTVIHSPLE RPLIVSSCSTEDRREKLSRYRNKKTKRNFGRKIKYACRKALADSQPRIRGRFARTEES DNSKRQELFSN" mobile_element complement(27755517..27755754) /note="source:CACAO_Again_on_S_E128_scaffold_3 1350 1588" /mobile_element_type="transposon:TIR/hAT" mobile_element 27755553..27756219 /note="source:CACAO_Again_on_S_E193_scaffold_6 150 833" /mobile_element_type="transposon:TIR/hAT" mobile_element 27756962..27757110 /note="source:scaffold_4_CACTA_0483 1009 1155" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27761627..27761765 /note="source:CACAO_Helitron_E87_scaffold_3 1 140" /mobile_element_type="transposon:Helitron" gene complement(27761868..27766119) /locus_tag="TCM_015401" /note="dbxref CacaoGD:Thecc1EG015401" mRNA complement(join(27761868..27762408,27762558..27762641, 27762904..27763070,27763928..27763976,27764055..27764227, 27765628..27766055)) /locus_tag="TCM_015401" /product="HSP20-like chaperones superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038706001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021712t1" /inference="similar to AA sequence:Phytozome:Glyma06g13360.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00299t00002" CDS complement(join(27762370..27762408,27762558..27762641, 27762904..27763070,27763928..27763976,27764055..27764227, 27765628..27766003)) /locus_tag="TCM_015401" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021712t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein isoform 1" /protein_id="EOY23532.1" /db_xref="Phytozome:Glyma06g13360.1" /db_xref="TAIR:AT5G53400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LV09" /translation="MAIISDYQEEEAKPSTSSSQPRKPVSFNASLDPSNPVGFLEKVF DFLGKETDLLRKENVDKEIAAMVRVAKEKSEKKVEEVAPKVELKKKEVKEENEIKKEV NKEAMDLDKKDDKKEEETSSGLRVPNKGNGLDLEKYSWTQTLQEVTVNVPVPSGTRSR FVVCEIKKNHLKVGLKGQPPVIDGELLQSVKPDDCYWSIEDNCSLSILLTKHNQMEWW KSLVKGDPEIDTQKVEPENSKLSDLDPETRQTVEKMMFDQRQKAMGLPTSDELQKQEI LKKFMSEHPEMDFSRAKLM" mRNA complement(join(27762612..27762641,27762897..27763070, 27763928..27763976,27764055..27764227,27765628..27766119)) /locus_tag="TCM_015401" /product="HSP20-like chaperones superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038706001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021712t1" /inference="similar to AA sequence:ricco:30169.m006491" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc379t13; inference alignment:Newbler:10:TSA:cgbaP1_g00299t00002" CDS complement(join(27762637..27762641,27762897..27763070, 27763928..27763976,27764055..27764227,27765628..27766003)) /locus_tag="TCM_015401" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006491; paralog of Thecc1EG021712t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein isoform 2" /protein_id="EOY23533.1" /db_xref="TAIR:AT4G27890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STN7" /translation="MAIISDYQEEEAKPSTSSSQPRKPVSFNASLDPSNPVGFLEKVF DFLGKETDLLRKENVDKEIAAMVRVAKEKSEKKVEEVAPKVELKKKEVKEENEIKKEV NKEAMDLDKKDDKKEEETSSGLRVPNKGNGLDLEKYSWTQTLQEVTVNVPVPSGTRSR FVVCEIKKNHLKVGLKGQPPVIDGELLQSVKPDDCYWSIEDNCSLSILLTKHNQMEWW KSLVKGDPEIDTQKVEPENSKLSDLDPETRQTVEKMMVII" gene complement(27766836..27774183) /locus_tag="TCM_015402" /note="dbxref CacaoGD:Thecc1EG015402" mRNA complement(join(27766836..27767963,27768166..27768303, 27768452..27768637,27768743..27768924,27769037..27769103, 27769200..27769772,27771927..27771944,27772143..27772414, 27773941..27774183)) /locus_tag="TCM_015402" /product="O-acyltransferase (WSD1-like) family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038705001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005148t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02150.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1923t1" CDS complement(join(27767805..27767963,27768166..27768303, 27768452..27768637,27768743..27768924,27769037..27769103, 27769200..27769772,27771927..27771944,27772143..27772414, 27773941..27773968)) /locus_tag="TCM_015402" /note="paralog of Thecc1EG005148t1" /codon_start=1 /product="O-acyltransferase (WSD1-like) family protein, putative" /protein_id="EOY23534.1" /db_xref="Phytozome:POPTR_0012s02150.1" /db_xref="TAIR:AT3G49200.1" /translation="MNRKSEAKWVPKLFHQSLISMNSTEIQEIDQVEAKIGTEEASPV SKDEVPLSTGSLIFHEPGINCCIIAIMGYKSKLDPAVIKEGLKQTLIKHPCFSSKLLS AIDQMMNSGKKKWIRTQVNVDNHVILPEVDTVTESPSQFIEDYVTYLTGIPIDLSKPL WELHLVNLKTPEAEAVGIFRIHHSIGDGMSLISLLLACCRKSSDPKALPTLPKQKQAD SRYPHPHGFFRLFLAIWSVLRLILNTLVDLLLFVATVVFLKDTKTPLKGSSGVEQNAK KIVHRTVSLDDIKLVKDAMGMTVNDVILGVTEAGLSRYLNRKYGEVDRGKEAEQKSNH LPRNIRLRATALVNIRQTAGIQVSFLSPFSRASEKVEYASQSFLVFKSKVKWGNQIGY ICIPFTIALRNDPLDYLRGAKAAGDRKKLSLEAICTHLTNKCVVKLFGSKLSAALVYR VIFNTTMTLSNVVGPVEEISLYGHPIAFIAPSVYGHPQALTCHFQSYMNKMSIVLAVD PNVIPDPRLLCDDLEESLKIFKDAVVLAKDAD" mobile_element complement(27770157..27771508) /note="source:CACAO_PIF_E144_scaffold_10 1202 2391" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 27774917..27778256 /locus_tag="TCM_015403" /note="dbxref CacaoGD:Thecc1EG015403" mRNA join(27774917..27775502,27775918..27776035, 27776760..27778256) /locus_tag="TCM_015403" /product="Lipase class 3-related protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G24230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015404t1" /inference="similar to AA sequence:ricco:30190.m010848" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07924t00001" CDS join(27775941..27776035,27776760..27777729) /locus_tag="TCM_015403" /note="dbxref ricco:30190.m010848; paralog of Thecc1EG015404t1" /codon_start=1 /product="Lipase class 3-related protein, putative" /protein_id="EOY23535.1" /db_xref="TAIR:AT5G24230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q680C0" /translation="MEELKVKTQDKPASTREIFCLSGPLHLTAVDWKNFHHRRSVAAS LVQGVYVLERDRQQNRQGPQAHALPWWDFFDFQLIRLLVDDVDSSIFGAVYQFKPFAF NNKHSAQNAPNYVIAFRGTINKSNSRSRDLKLDLLCIRNRLHESSRFQLAMQAVESVI AVAGTSSIWLAGHSLGSAVSLLAGKNMTKMGYSVETYLFNPPFFSVPVERIKNEKLKH GIRLTSSIVKAGLTVAVKGRHQRRQQDNTFLLLSAWKPYLFVNPADHICSGYIGYFEH RKKMEEIGAGKIERIATQNSIGSLLSVSTKSDSGPLHLLPSAYLTINLSQSPDFKRAH GIHQWWDPSFDCRSELHEYR" gene 27778433..27780817 /locus_tag="TCM_015404" /note="dbxref CacaoGD:Thecc1EG015404" mRNA join(27778433..27778629,27779247..27779311, 27779450..27780817) /locus_tag="TCM_015404" /product="Lipase class 3-related protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015403t1" /inference="similar to AA sequence:Phytozome:Glyma01g43560.2" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1139t1" CDS join(27778570..27778629,27779247..27779311, 27779450..27780425) /locus_tag="TCM_015404" /note="paralog of Thecc1EG015403t1" /codon_start=1 /product="Lipase class 3-related protein, putative" /protein_id="EOY23536.1" /db_xref="Phytozome:Glyma01g43560.2" /db_xref="TAIR:AT5G24230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q680C0" /translation="MKFSNSECITLGKPFFIGLKVMAPDSAIFSHSGPSHLTAIDWTN EHHRRSIAASLVQGVYVLERDRQKNRQGPQACSPPWWESFNFQLNHLLIDDVDQSIFG AIYEFINFSSRNYSTPQNAPHHVIAFRGTLNAPASISRDLKLDLQCICNRLHVSSRFQ LAMKCVEDIAATATADRSNIWLAGHSLGSAVALLAGKNLTKMGCLVETYLFNPPFLSA PVEILKPQVLKNGIRFTNSVVNAALAIAIKGRQPKPERDDQFTALSSWTPYLFVNPTD IICSEYKGYFEHRKIMEEIGAGKIERLSTQNSIVCLFSTVLRKNSEPLHLLPSAYLTI NQSPLPGFKRAHGIEQWWDPNFNGQVELHQFK" gene 27781387..27793075 /locus_tag="TCM_015405" /note="dbxref CacaoGD:Thecc1EG015405" mRNA join(27781387..27782698,27783232..27783746, 27793045..27793075) /locus_tag="TCM_015405" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01620.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02160.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9367t1" CDS 27781496..27782698 /locus_tag="TCM_015405" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY23537.1" /db_xref="Phytozome:POPTR_0012s02160.1" /db_xref="TAIR:AT3G06240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDR9" /translation="MNSCSGRRPRIMASSLSLPQNTITDILSRLPVKSLTRFKLVSKN WAHLTSTPAFIAAHLRRSSSDPSLLIRRYRIHNGSEFGFWLITNPTRKFRSQLLDFPS DESLLRLPKIVGSVDGLVCLDVSPCYASDFVLWNPGTKQFKHLPFPLITSSKSNPIWL VFLGFGFDSFNNDYKLVRIVSFKRNDASPFLRVEVYSWREGVWKEIEESFDSTLLCGV PEGVVVDGSLNWLAIGLQDFADRKFVISFDMGREVFKRIALPAVTRFGNVKVMSYMGL LAIAVYPLVFAANGINMNRFEFWVQSDGEDGSKHWTRMVAIENFSKTLVPMGTWRDRE VVIKHIGVNDRENYPSLLLYDPVDEGTKRLPVDGVDFCVEGYSYVESLVSVNEEAKMV VEQKHSRN" gene complement(27784540..27787134) /locus_tag="TCM_015406" /note="dbxref CacaoGD:Thecc1EG015406" mRNA complement(join(27784540..27784954,27785032..27785088, 27786877..27787134)) /locus_tag="TCM_015406" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.92 coverage" CDS complement(join(27784794..27784954,27785032..27785077)) /locus_tag="TCM_015406" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23538.1" /translation="MTWVVGAASIIFEKKVLMEWPILRLDVLLMGKLSPAIELRSKFA VSSIKEKRENKEQRFRSRDLITMV" gene 27795489..27799678 /locus_tag="TCM_015407" /note="dbxref CacaoGD:Thecc1EG015407" mRNA join(27795489..27797005,27797471..27797607, 27798251..27799374) /locus_tag="TCM_015407" /product="Plant invertase/pectin methylesterase inhibitor superfamily isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029251t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s01610.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05087t00001" mRNA join(27795661..27797005,27797471..27797607, 27798251..27799678) /locus_tag="TCM_015407" /product="Plant invertase/pectin methylesterase inhibitor superfamily isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029251t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s01610.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc477t1; alternateUTRof:Thecc1EG015407t1; inference alignment:Newbler:10:TSA:cgbaB_g05087t00001" CDS join(27796020..27797005,27797471..27797607, 27798251..27798948) /locus_tag="TCM_015407" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029251t1" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily isoform 1" /protein_id="EOY23539.1" /db_xref="Phytozome:POPTR_0015s01610.1" /db_xref="TAIR:AT3G49220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3B0" /translation="MGYDRLRPSEPGGSGLPQLQQLPHEEPRAKNHKKKLLIVSVVAL AMIIISAVCAGLVIGLRKGGADPVGTQIRRKPTQAMSRTCSKTRFPNLCVNSLLDFPG SLTANEEDLVHISFNMTLQHFSKALYTTTSISYVQMDPRVRSAYDDCLELLEDSIDAL SRSLFSVVPSQDGNANNNNVKAGTNQDVMTWLSAALTNQDTCSEGFEGVSGAVKDQVA EKMKDLSELVSNCLSIFAASGGDDFAGVPIQNRRLLATDDDISGEIIDDENFPKWLGR KERELLDTPVSTIQADIIVSKDGNGTVKTITEAIKKAPEYSARRIIIYVRAGRYEESN LKVGRKKINLMFIGDGKGKTVITGGNSVFDNMTTFHTAAFAATGAGFIARDMTFENWA GPAKHQAVALRIGADHAVVYRCNVIGYQDTLYTHSNRQFYRECDIYGTVDFIFGNAAV VLQNCSIYARKPMPLQKNTITAQNRKDPNQNTGISIHACRILATSDLVAAKGSFQTYL GRPWKLYSRTVFMLSYMSDHIHPRGWLEWNATFALDTLYYGEYMNSGPGAAVGQRVRW PGYRVITSEIEAGKFTVGQFIYGSSWLPSTGVAFLAGLQV" CDS join(27796020..27797005,27797471..27797607, 27798251..27798948) /locus_tag="TCM_015407" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029251t1" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily isoform 1" /protein_id="EOY23540.1" /db_xref="Phytozome:POPTR_0015s01610.1" /db_xref="TAIR:AT3G49220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3B0" /translation="MGYDRLRPSEPGGSGLPQLQQLPHEEPRAKNHKKKLLIVSVVAL AMIIISAVCAGLVIGLRKGGADPVGTQIRRKPTQAMSRTCSKTRFPNLCVNSLLDFPG SLTANEEDLVHISFNMTLQHFSKALYTTTSISYVQMDPRVRSAYDDCLELLEDSIDAL SRSLFSVVPSQDGNANNNNVKAGTNQDVMTWLSAALTNQDTCSEGFEGVSGAVKDQVA EKMKDLSELVSNCLSIFAASGGDDFAGVPIQNRRLLATDDDISGEIIDDENFPKWLGR KERELLDTPVSTIQADIIVSKDGNGTVKTITEAIKKAPEYSARRIIIYVRAGRYEESN LKVGRKKINLMFIGDGKGKTVITGGNSVFDNMTTFHTAAFAATGAGFIARDMTFENWA GPAKHQAVALRIGADHAVVYRCNVIGYQDTLYTHSNRQFYRECDIYGTVDFIFGNAAV VLQNCSIYARKPMPLQKNTITAQNRKDPNQNTGISIHACRILATSDLVAAKGSFQTYL GRPWKLYSRTVFMLSYMSDHIHPRGWLEWNATFALDTLYYGEYMNSGPGAAVGQRVRW PGYRVITSEIEAGKFTVGQFIYGSSWLPSTGVAFLAGLQV" gene 27799436..27801619 /locus_tag="TCM_015408" /note="dbxref CacaoGD:Thecc1EG015408" mRNA join(27799436..27799678,27801116..27801619) /locus_tag="TCM_015408" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.60 coverage" CDS join(27799585..27799678,27801116..27801234) /locus_tag="TCM_015408" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23541.1" /translation="MSSKSTLTCRSAEEMPINFFHPVFDECQPQWDGDLGATRPHLVS HDRSLSYRIIQKLAAMGQNRNTSFQL" mobile_element complement(27799871..27801089) /note="source:scaffold_5_CACTA_0614 1444 2647" /mobile_element_type="transposon:TIR/CACTA" gene complement(27801650..27805594) /locus_tag="TCM_015409" /note="dbxref CacaoGD:Thecc1EG015409" mRNA complement(join(27801650..27802345,27802942..27804574, 27805351..27805594)) /locus_tag="TCM_015409" /product="Phosphatidylinositol 3- and 4-kinase,Ubiquitin family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016485t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s01600.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7755t1" CDS complement(join(27801968..27802345,27802942..27804114)) /locus_tag="TCM_015409" /note="paralog of Thecc1EG016485t1" /codon_start=1 /product="Phosphatidylinositol 3- and 4-kinase,Ubiquitin family protein" /protein_id="EOY23542.1" /db_xref="Phytozome:POPTR_0015s01600.1" /db_xref="TAIR:AT5G24240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL47" /translation="MRKQKLVFQGRELARNNSLVRDYGVADRNVMHLVLRLSDLQAIT VRTVCGKEFEFHIARGRNMGYVKQQIAKKGKGFLNLKDQELVCNGEELEDQRLITDIC KNNDAVILLLVRKSVKLRAVPFEKDIEVSIEELNLNEGKPDAIGQYQGVTLSQEHHVM ERKLMQRDFILEPLVVNSKIELPLVIKELIDLTFNGLERGNKPIRSSEGSGGAYFMQD SSGQKYISVFKPIDEEPMAVNNPQGLPLSLDGEGLKKGTRVGEGALREVAAYLLDHRM AGPHSFDGGGKGFAGVPPTVMVKCLHKGFNYPEGYEYDPKNIKIGSLQMFVNNVGSCE DMGPCAFPVDEVHKISVLDIRLANADRHAGNILVTRNCEEGRVSLVPIDHGYCLPENF EDCTFDWLYWPQAHEPYTPGVINYIKSLDAEKDIELLKFHGWDMPPKCARTLRISTML LKKGAERGLTPYSIGRIMCRETVKEESVIEQIVREAEEAVLPGMSDDAFFEAVASIMD RHLDELTS" mobile_element 27805504..27805581 /note="source:scaffold_9_CACTA_0943 9054 9129" /mobile_element_type="transposon:TIR/CACTA" gene complement(27806167..27812405) /locus_tag="TCM_015410" /note="dbxref CacaoGD:Thecc1EG015410" mRNA complement(join(27806167..27806702,27806979..27807531, 27807827..27809206,27809972..27810166,27811073..27811540, 27811915..27812130)) /locus_tag="TCM_015410" /product="Prolyl oligopeptidase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038548001" /inference="similar to AA sequence:Phytozome:GSVIVT01038548001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc851t2; alternateUTRof:Thecc1EG015410t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc839t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9364t1" mRNA complement(join(27806167..27806780,27806979..27807531, 27807827..27809206,27809972..27810166,27811073..27811540, 27811915..27812130)) /locus_tag="TCM_015410" /product="Prolyl oligopeptidase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038548001" /inference="similar to AA sequence:Phytozome:GSVIVT01038548001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc851t5; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc839t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9364t1" mRNA complement(join(27806169..27807531,27807827..27808927, 27809177..27809206,27809972..27810166,27811073..27811540, 27811915..27812002,27812174..27812405)) /locus_tag="TCM_015410" /product="Prolyl oligopeptidase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038548001" /inference="similar to AA sequence:Phytozome:GSVIVT01038548001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc839t3_C1; alternateUTRof:Thecc1EG015410t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc839t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9364t1" mRNA complement(join(27806258..27806780,27806979..27807531, 27807827..27808927,27809177..27809206,27809972..27810166, 27811073..27811540,27812174..27812362)) /locus_tag="TCM_015410" /product="Prolyl oligopeptidase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038548001" /inference="similar to AA sequence:Phytozome:GSVIVT01038548001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b014887t1a3; alternateUTRof:Thecc1EG015410t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc839t4" mRNA complement(join(27806266..27807531,27807827..27808927, 27809177..27809206,27809972..27810166,27811073..27811540, 27812174..27812351)) /locus_tag="TCM_015410" /product="Prolyl oligopeptidase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038548001" /inference="similar to AA sequence:Phytozome:GSVIVT01038548001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc839t4" mRNA complement(join(27806675..27806733,27806979..27807531, 27807827..27808927,27809177..27809206,27809972..27810166, 27811073..27811540,27811915..27812075)) /locus_tag="TCM_015410" /product="Prolyl oligopeptidase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038548001" /inference="similar to AA sequence:Phytozome:GSVIVT01038548001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc839t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc839t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9364t1" CDS complement(join(27806980..27807531,27807827..27808927, 27809177..27809206,27809972..27810166,27811073..27811540, 27812174..27812179)) /locus_tag="TCM_015410" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Prolyl oligopeptidase family protein isoform 1" /protein_id="EOY23543.1" /db_xref="Phytozome:GSVIVT01038548001" /db_xref="TAIR:AT5G24260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNF6" /translation="MQEFLQFVMQSVDDSKESKKSLKRSRSLSPRDMPVTDCTAMQTI DDCILFPVEEIVQSPLPGYVAPTSVSFSPDDSLIAFLFSPDHTLSRKVFTLDLNAGKQ ELFFSPPDGGLDESNISPEEKLRRERSRERGLGVTRYEWVKTISKKKTIMVPLPGGIY FQEFSDSKPELKLPSMSSSPIIDPHLSPDGTMLAYIRDYELHVLNLLYSEQRQLTFGA NGDILTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTEVDYSEIPLFRIMHQGKSSVGP EAEEDHAYPFAGASNVKVRLGVVSTAGASVTWMDLFCGGSNFDDEYLARVNWMHGNVL TAQVLNRSHSKLKILKFDIKTGQNNVVMVEELKPWINLHDCFTPLDRGATRYSGGFIW ASERTGYRHLYLHDANGTCLGPITEGDWMVEQIAGINEAAGLVYFTGTLDGPLESHLY YTRLCPDENSTLQAPIRLTHGKGKHVVVLDHHMRKFVDIYDSLDSPPRVLLCNLIDGS VIISLYEQPFTIPRLKRLQLEPPEIVQIQSNDGTILYGAIYKPDAARFGPPPYKTLIS VYGGPSVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEGCLKNNIGRV DAEDQLTGAEWLIKQGLAKAGHIGFYGWSYGGYLSAMTLARFPDVFQCAVSGAPVTSW DGYDTFYTEKYMGLPSEDAESYEYSSVMHHVNKMKGRLLLVHGMIDENVHFRHTARLV NALVATRKSYELLIFPDERHMPRRHRDRIYMEERIWEFIERSL" CDS complement(join(27806980..27807531,27807827..27808927, 27809177..27809206,27809972..27810166,27811073..27811540, 27812174..27812179)) /locus_tag="TCM_015410" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Prolyl oligopeptidase family protein isoform 1" /protein_id="EOY23545.1" /db_xref="Phytozome:GSVIVT01038548001" /db_xref="TAIR:AT5G24260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNF6" /translation="MQEFLQFVMQSVDDSKESKKSLKRSRSLSPRDMPVTDCTAMQTI DDCILFPVEEIVQSPLPGYVAPTSVSFSPDDSLIAFLFSPDHTLSRKVFTLDLNAGKQ ELFFSPPDGGLDESNISPEEKLRRERSRERGLGVTRYEWVKTISKKKTIMVPLPGGIY FQEFSDSKPELKLPSMSSSPIIDPHLSPDGTMLAYIRDYELHVLNLLYSEQRQLTFGA NGDILTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTEVDYSEIPLFRIMHQGKSSVGP EAEEDHAYPFAGASNVKVRLGVVSTAGASVTWMDLFCGGSNFDDEYLARVNWMHGNVL TAQVLNRSHSKLKILKFDIKTGQNNVVMVEELKPWINLHDCFTPLDRGATRYSGGFIW ASERTGYRHLYLHDANGTCLGPITEGDWMVEQIAGINEAAGLVYFTGTLDGPLESHLY YTRLCPDENSTLQAPIRLTHGKGKHVVVLDHHMRKFVDIYDSLDSPPRVLLCNLIDGS VIISLYEQPFTIPRLKRLQLEPPEIVQIQSNDGTILYGAIYKPDAARFGPPPYKTLIS VYGGPSVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEGCLKNNIGRV DAEDQLTGAEWLIKQGLAKAGHIGFYGWSYGGYLSAMTLARFPDVFQCAVSGAPVTSW DGYDTFYTEKYMGLPSEDAESYEYSSVMHHVNKMKGRLLLVHGMIDENVHFRHTARLV NALVATRKSYELLIFPDERHMPRRHRDRIYMEERIWEFIERSL" CDS complement(join(27806980..27807531,27807827..27808927, 27809177..27809206,27809972..27810166,27811073..27811522)) /locus_tag="TCM_015410" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Prolyl oligopeptidase family protein isoform 4" /protein_id="EOY23546.1" /db_xref="Phytozome:GSVIVT01038548001" /db_xref="TAIR:AT5G24260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNF6" /translation="MQSVDDSKESKKSLKRSRSLSPRDMPVTDCTAMQTIDDCILFPV EEIVQSPLPGYVAPTSVSFSPDDSLIAFLFSPDHTLSRKVFTLDLNAGKQELFFSPPD GGLDESNISPEEKLRRERSRERGLGVTRYEWVKTISKKKTIMVPLPGGIYFQEFSDSK PELKLPSMSSSPIIDPHLSPDGTMLAYIRDYELHVLNLLYSEQRQLTFGANGDILTHG LAEYIAQEEMDRKTGYWWSLDSKFIAFTEVDYSEIPLFRIMHQGKSSVGPEAEEDHAY PFAGASNVKVRLGVVSTAGASVTWMDLFCGGSNFDDEYLARVNWMHGNVLTAQVLNRS HSKLKILKFDIKTGQNNVVMVEELKPWINLHDCFTPLDRGATRYSGGFIWASERTGYR HLYLHDANGTCLGPITEGDWMVEQIAGINEAAGLVYFTGTLDGPLESHLYYTRLCPDE NSTLQAPIRLTHGKGKHVVVLDHHMRKFVDIYDSLDSPPRVLLCNLIDGSVIISLYEQ PFTIPRLKRLQLEPPEIVQIQSNDGTILYGAIYKPDAARFGPPPYKTLISVYGGPSVQ LVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEGCLKNNIGRVDAEDQLTG AEWLIKQGLAKAGHIGFYGWSYGGYLSAMTLARFPDVFQCAVSGAPVTSWDGYDTFYT EKYMGLPSEDAESYEYSSVMHHVNKMKGRLLLVHGMIDENVHFRHTARLVNALVATRK SYELLIFPDERHMPRRHRDRIYMEERIWEFIERSL" CDS complement(join(27806980..27807531,27807827..27808927, 27809177..27809206,27809972..27810166,27811073..27811522)) /locus_tag="TCM_015410" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Prolyl oligopeptidase family protein isoform 4" /protein_id="EOY23547.1" /db_xref="Phytozome:GSVIVT01038548001" /db_xref="TAIR:AT5G24260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNF6" /translation="MQSVDDSKESKKSLKRSRSLSPRDMPVTDCTAMQTIDDCILFPV EEIVQSPLPGYVAPTSVSFSPDDSLIAFLFSPDHTLSRKVFTLDLNAGKQELFFSPPD GGLDESNISPEEKLRRERSRERGLGVTRYEWVKTISKKKTIMVPLPGGIYFQEFSDSK PELKLPSMSSSPIIDPHLSPDGTMLAYIRDYELHVLNLLYSEQRQLTFGANGDILTHG LAEYIAQEEMDRKTGYWWSLDSKFIAFTEVDYSEIPLFRIMHQGKSSVGPEAEEDHAY PFAGASNVKVRLGVVSTAGASVTWMDLFCGGSNFDDEYLARVNWMHGNVLTAQVLNRS HSKLKILKFDIKTGQNNVVMVEELKPWINLHDCFTPLDRGATRYSGGFIWASERTGYR HLYLHDANGTCLGPITEGDWMVEQIAGINEAAGLVYFTGTLDGPLESHLYYTRLCPDE NSTLQAPIRLTHGKGKHVVVLDHHMRKFVDIYDSLDSPPRVLLCNLIDGSVIISLYEQ PFTIPRLKRLQLEPPEIVQIQSNDGTILYGAIYKPDAARFGPPPYKTLISVYGGPSVQ LVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEGCLKNNIGRVDAEDQLTG AEWLIKQGLAKAGHIGFYGWSYGGYLSAMTLARFPDVFQCAVSGAPVTSWDGYDTFYT EKYMGLPSEDAESYEYSSVMHHVNKMKGRLLLVHGMIDENVHFRHTARLVNALVATRK SYELLIFPDERHMPRRHRDRIYMEERIWEFIERSL" CDS complement(join(27806980..27807531,27807827..27808921)) /locus_tag="TCM_015410" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Prolyl oligopeptidase family protein isoform 2" /protein_id="EOY23544.1" /db_xref="Phytozome:GSVIVT01038548001" /db_xref="TAIR:AT5G24260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNF6" /translation="MDRKTGYWWSLDSKFIAFTEVDYSEIPLFRIMHQGKSSVGPEAE EDHAYPFAGASNVKVRLGVVSTAGASVTWMDLFCGGSNFDDEYLARVNWMHGNVLTAQ VLNRSHSKLKILKFDIKTGQNNVVMVEELKPWINLHDCFTPLDRGATRYSGGFIWASE RTGYRHLYLHDANGTCLGPITEGDWMVEQIAGINEAAGLVYFTGTLDGPLESHLYYTR LCPDENSTLQAPIRLTHGKGKHVVVLDHHMRKFVDIYDSLDSPPRVLLCNLIDGSVII SLYEQPFTIPRLKRLQLEPPEIVQIQSNDGTILYGAIYKPDAARFGPPPYKTLISVYG GPSVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEGCLKNNIGRVDAE DQLTGAEWLIKQGLAKAGHIGFYGWSYGGYLSAMTLARFPDVFQCAVSGAPVTSWDGY DTFYTEKYMGLPSEDAESYEYSSVMHHVNKMKGRLLLVHGMIDENVHFRHTARLVNAL VATRKSYELLIFPDERHMPRRHRDRIYMEERIWEFIERSL" CDS complement(join(27806980..27807531,27807827..27808921)) /locus_tag="TCM_015410" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Prolyl oligopeptidase family protein isoform 2" /protein_id="EOY23548.1" /db_xref="Phytozome:GSVIVT01038548001" /db_xref="TAIR:AT5G24260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNF6" /translation="MDRKTGYWWSLDSKFIAFTEVDYSEIPLFRIMHQGKSSVGPEAE EDHAYPFAGASNVKVRLGVVSTAGASVTWMDLFCGGSNFDDEYLARVNWMHGNVLTAQ VLNRSHSKLKILKFDIKTGQNNVVMVEELKPWINLHDCFTPLDRGATRYSGGFIWASE RTGYRHLYLHDANGTCLGPITEGDWMVEQIAGINEAAGLVYFTGTLDGPLESHLYYTR LCPDENSTLQAPIRLTHGKGKHVVVLDHHMRKFVDIYDSLDSPPRVLLCNLIDGSVII SLYEQPFTIPRLKRLQLEPPEIVQIQSNDGTILYGAIYKPDAARFGPPPYKTLISVYG GPSVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEGCLKNNIGRVDAE DQLTGAEWLIKQGLAKAGHIGFYGWSYGGYLSAMTLARFPDVFQCAVSGAPVTSWDGY DTFYTEKYMGLPSEDAESYEYSSVMHHVNKMKGRLLLVHGMIDENVHFRHTARLVNAL VATRKSYELLIFPDERHMPRRHRDRIYMEERIWEFIERSL" gene complement(27815301..27820121) /locus_tag="TCM_015411" /note="dbxref CacaoGD:Thecc1EG015411" mRNA complement(join(27815301..27815673,27815748..27815860, 27815949..27816029,27816374..27816426,27816551..27816659, 27816852..27816911,27817018..27817100,27817199..27817345, 27820068..27820121)) /locus_tag="TCM_015411" /product="Calcium-binding EF-hand family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016488t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02230.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12007t00001" CDS complement(join(27815610..27815673,27815748..27815860, 27815949..27816029,27816374..27816426,27816551..27816659, 27816852..27816911,27817018..27817100,27817199..27817277)) /locus_tag="TCM_015411" /note="paralog of Thecc1EG016488t1" /codon_start=1 /product="Calcium-binding EF-hand family protein" /protein_id="EOY23549.1" /db_xref="Phytozome:POPTR_0012s02230.1" /db_xref="TAIR:AT5G24270.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C3TRS3" /translation="MGCVSSKRRKQEPGYEEPTVLAAETPFTVSEVEALHELFKKLSN AIIADGLIHREEFQLALFRNRNRRNLFADRIFDLFDVKRNGVIEFGEFVRSLGVFHPN APVADKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLALSEDVVETIVDKTFGEA DTQGDGKIDPEEWKEFVSKHPSLIKNMTLPYLKDITLAFPSFVVRSEVDESDV" misc_feature complement(join(27817856..27818362,27820068..27820093)) /locus_tag="TCM_015411" /note="Gene fragment of Thecc1EG015411t1; dbxref gnl|CacaoGD|Thecc1EG015411t1; quality class is mediumpartial-partof is thecc1eg015411t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1122t8_C2; dbxref CacaoGD:Thecc1EG015412t1" mobile_element 27821256..27821293 /note="source:CACAO_M_E12044_F76_scaffold_2 22269 22319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27821294..27821576) /note="source:CACAO_M_E57385_F197_scaffold_9 8048 8339" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27821789..27821938) /note="source:CACAO_PIF_E119_scaffold_3 4515 4664" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 27821831..27821950 /note="source:scaffold_7_CACTA_0795 2909 3029" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27822365..27822697) /note="source:INTACT16_F6_scaffold_9-int 1100 1425" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(27824107..27824255) /note="source:scaffold_7_CACTA_0795 2873 3024" /mobile_element_type="transposon:TIR/CACTA" gene 27825369..27831927 /locus_tag="TCM_015413" /note="dbxref CacaoGD:Thecc1EG015413" mRNA join(27825369..27825537,27829315..27831927) /locus_tag="TCM_015413" /product="Pentatricopeptide repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02240.1" /inference="similar to AA sequence:Phytozome:Glyma06g13430.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7782t1" mobile_element complement(27826179..27827052) /note="source:CACAO_on_S_E46_scaffold_2 583 1426" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(27826265..27827274) /note="source:scaffold_1_CACTA_0016 1446 2438" /mobile_element_type="transposon:TIR/CACTA" CDS 27829741..27831702 /locus_tag="TCM_015413" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative" /protein_id="EOY23550.1" /db_xref="Phytozome:Glyma06g13430.2" /db_xref="TAIR:AT3G49240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RSF8" /translation="MALSKPTFLTHLQNLAKRHHRSPPSFITFRHLSFNTPEEAAAER RRRKRRLRVEPPLSSAHRSKQQAQQVAPSKPIQNPNAPKIPEPVTVLTGNRLNLHNKI LKLIRENDLEEAALYTRHSVYSNCRPTVYTVNAVLNAQLRQSKYADLLSLHRFITLAG IAPNVITHNLIFQTYLDCKKPDTALEHYKQFSNESPVNPSPTTYRILVKGLVDNGKLE KALEMKEEMVEKGLAPDPVVYSYLILGCAKSGDSDGIFKLFEELKEKKDGVLEDGVIY GGLMKGYFMRGMEKEAMECYEEACGENSKVKMSAVAYNYVLDALSKNGKFDEALRLFD RMKNEHSPPRRLAVNLGSFNVIADGYCAEGKFKEAMEAFRLMGDYRCSPDTLSFNNLI DQLCQNGLLGEAEDLYGEMGDKGVNPDEYTYVLLMDACFKVDRIDDGASYFRKMVESG LRPNLAVYNRLVDELVKVGKVDEAKSFYDTMVKKLKMDDASYKFMIKALSDVGKLDVV LKMVDEMLDDESVDFNEELQEFVKEELRNEGREEDLTKLMEEKERLKAEAKAREIEAA EAAKRSAKAAVSSLLPSKLFGKKEDESQSTAANESTIEAASEGEVQAQDVNAGPSEEA TVIESVAADSNSVGEATVADSGAVDTKSF" mobile_element complement(27832514..27832593) /note="source:CACAO_Mutator_E39_scaffold_1 4417 4496" /mobile_element_type="transposon:TIR/Mutator" gene complement(27834041..27836976) /locus_tag="TCM_015414" /note="dbxref CacaoGD:Thecc1EG015414" mRNA complement(join(27834041..27834606,27834912..27835298, 27836532..27836976)) /locus_tag="TCM_015414" /product="RING/U-box and TRAF-like domains" /inference="alignment:exonerate- protein:2:ricco:30024.m001712" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005142t1" /inference="similar to AA sequence:Phytozome:Glyma06g13440.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07939t00001" CDS complement(join(27834244..27834606,27834912..27835298, 27836532..27836798)) /locus_tag="TCM_015414" /note="paralog of Thecc1EG005142t1" /codon_start=1 /product="RING/U-box and TRAF-like domains" /protein_id="EOY23551.1" /db_xref="Phytozome:Glyma06g13440.1" /db_xref="TAIR:AT4G27880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STN8" /translation="MELDSIECVSSTDGMDEDEIHHHNLHHPHPHQGHHQFSSSKPHN GTNNTANANSINNIVGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKT RVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYNLGCPEIFPYYSKLKHEAICNYR PYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLT VFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEIEARNYSYSLEVGANGRKLIWEGT PRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIP NLCS" gene complement(27837859..27845054) /locus_tag="TCM_015415" /note="dbxref CacaoGD:Thecc1EG015415" mRNA complement(join(27837859..27838206,27838286..27838441, 27839510..27839632,27839749..27839811,27840189..27840293, 27840391..27840490,27840581..27840651,27840893..27840949, 27841163..27841240,27841317..27841391,27841746..27841796, 27842375..27842454,27842831..27842931,27843437..27843498, 27843884..27845054)) /locus_tag="TCM_015415" /product="CLP protease regulatory subunit X isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038550001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036036t2" /inference="similar to AA sequence:ricco:30024.m001707" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7937t2" mRNA complement(join(27838106..27838206,27838286..27838441, 27839517..27839632,27839749..27839811,27840189..27840293, 27840391..27840490,27840581..27840651,27840893..27840949, 27841163..27841240,27841317..27841391,27841746..27841796, 27842375..27842454,27842831..27842931,27843437..27843498, 27843884..27844650)) /locus_tag="TCM_015415" /product="CLP protease regulatory subunit X isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038550001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036036t2" /inference="similar to AA sequence:ricco:30024.m001707" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1151t11_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7937t2" mRNA complement(join(27838106..27838206,27838286..27838441, 27839517..27839632,27839749..27839811,27840189..27840490, 27840581..27840651,27840893..27840949,27841163..27841240, 27841317..27841391,27841746..27841796,27842375..27842454, 27842831..27842931,27843437..27843498,27843884..27844650)) /locus_tag="TCM_015415" /product="CLP protease regulatory subunit X isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038550001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036036t2" /inference="similar to AA sequence:ricco:30024.m001707" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1151t4_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7937t2" CDS complement(join(27838135..27838206,27838286..27838441, 27839510..27839632,27839749..27839811,27840189..27840293, 27840391..27840490,27840581..27840651,27840893..27840949, 27841163..27841240,27841317..27841391,27841746..27841796, 27842375..27842454,27842831..27842931,27843437..27843498, 27843884..27844474)) /locus_tag="TCM_015415" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30024.m001707; paralog of Thecc1EG036036t2" /codon_start=1 /product="CLP protease regulatory subunit X isoform 1" /protein_id="EOY23552.1" /db_xref="TAIR:AT5G53350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48566" /translation="MAAAAALRSKPSVETASLTVSQFRHFLSNYMHCGRMASSSHSTT YRTKWDDHFVNTPYHFTSFKPVSLRGELVEKGSQLLDIRRNSRGLNKDFDRELREKLN YSNCTVLSSYGDPPEVWQPPGDGVAIRVSGVNLGRGGGGGAGGGGGASTGSGGGFGPG SKDGCWGGSNLGHNFPTPKDICKGLDKFVIGQERAKKVLSVAVYNHYMRIYHESLQKR PAGDSVSNIADVLDDDIVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTL TQAGYVGEDVESILYKLLVVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG VQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDIEKTISERRQD SSIGFGAPVRANMRAGGVTNAAVASTLMESVESSDLIAYGLIPEFVGRFPVLVSLLAL TEEQLVQVLTEPKNALGKQYKRMFQMNGVKLHITENALKLIARKAISKNTGARGLRAI LENILMDSMYEIPDVRTGDDVIDAVVVDEEAVGSEGRGTGAKILYGKGALDRYLSQQK SKDLETTAEGSDGEPEVETELPSVVASM" CDS complement(join(27838411..27838441,27839517..27839632, 27839749..27839811,27840189..27840293,27840391..27840490, 27840581..27840651,27840893..27840949,27841163..27841240, 27841317..27841391,27841746..27841796,27842375..27842454, 27842831..27842931,27843437..27843498,27843884..27844474)) /locus_tag="TCM_015415" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30024.m001707; paralog of Thecc1EG036036t2" /codon_start=1 /product="CLP protease regulatory subunit X isoform 2" /protein_id="EOY23553.1" /db_xref="TAIR:AT5G53350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48566" /translation="MAAAAALRSKPSVETASLTVSQFRHFLSNYMHCGRMASSSHSTT YRTKWDDHFVNTPYHFTSFKPVSLRGELVEKGSQLLDIRRNSRGLNKDFDRELREKLN YSNCTVLSSYGDPPEVWQPPGDGVAIRVSGVNLGRGGGGGAGGGGGASTGSGGGFGPG SKDGCWGGSNLGHNFPTPKDICKGLDKFVIGQERAKKVLSVAVYNHYMRIYHESLQKR PAGDSVSNIADVLDDDIVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTL TQAGYVGEDVESILYKLLVVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG VQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDIEKTISERRQD SSIGFGAPVRANMRAGGVTNAAVASTLMESVESSDLIAYGLIPEFVGRFPVLVSLLAL TEEQLVQVLTEPKNALGKQYKRMFQMNGVKLHITENALKLIARKAISKNTGARGLRAI LENILMDSIFQMSGLVMM" mRNA complement(join(27838416..27838441,27839510..27839632, 27839749..27839811,27840189..27840490,27840581..27840651, 27840893..27840949,27841163..27841240,27841317..27841391, 27841746..27841796,27842375..27842454,27842831..27842931, 27843437..27843498,27843884..27844679)) /locus_tag="TCM_015415" /product="CLP protease regulatory subunit X isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038550001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036036t2" /inference="similar to AA sequence:ricco:30024.m001707" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc762t4; alternateUTRof:Thecc1EG015415t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7937t2" CDS complement(join(27840376..27840490,27840581..27840651, 27840893..27840949,27841163..27841240,27841317..27841391, 27841746..27841796,27842375..27842454,27842831..27842931, 27843437..27843498,27843884..27844474)) /locus_tag="TCM_015415" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30024.m001707; paralog of Thecc1EG036036t2" /codon_start=1 /product="CLP protease regulatory subunit X isoform 3" /protein_id="EOY23554.1" /db_xref="TAIR:AT5G53350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48566" /translation="MAAAAALRSKPSVETASLTVSQFRHFLSNYMHCGRMASSSHSTT YRTKWDDHFVNTPYHFTSFKPVSLRGELVEKGSQLLDIRRNSRGLNKDFDRELREKLN YSNCTVLSSYGDPPEVWQPPGDGVAIRVSGVNLGRGGGGGAGGGGGASTGSGGGFGPG SKDGCWGGSNLGHNFPTPKDICKGLDKFVIGQERAKKVLSVAVYNHYMRIYHESLQKR PAGDSVSNIADVLDDDIVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTL TQAGYVGEDVESILYKLLVVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG VQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDIEKTISERRQD SSIGFGAPVRANMRAGGVTNAAVASTLMESVSAP" CDS complement(join(27840376..27840490,27840581..27840651, 27840893..27840949,27841163..27841240,27841317..27841391, 27841746..27841796,27842375..27842454,27842831..27842931, 27843437..27843498,27843884..27844474)) /locus_tag="TCM_015415" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30024.m001707; paralog of Thecc1EG036036t2" /codon_start=1 /product="CLP protease regulatory subunit X isoform 3" /protein_id="EOY23555.1" /db_xref="TAIR:AT5G53350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48566" /translation="MAAAAALRSKPSVETASLTVSQFRHFLSNYMHCGRMASSSHSTT YRTKWDDHFVNTPYHFTSFKPVSLRGELVEKGSQLLDIRRNSRGLNKDFDRELREKLN YSNCTVLSSYGDPPEVWQPPGDGVAIRVSGVNLGRGGGGGAGGGGGASTGSGGGFGPG SKDGCWGGSNLGHNFPTPKDICKGLDKFVIGQERAKKVLSVAVYNHYMRIYHESLQKR PAGDSVSNIADVLDDDIVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTL TQAGYVGEDVESILYKLLVVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG VQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDIEKTISERRQD SSIGFGAPVRANMRAGGVTNAAVASTLMESVSAP" gene complement(27845741..27857085) /locus_tag="TCM_015416" /note="dbxref CacaoGD:Thecc1EG015416" mRNA complement(join(27845741..27846269,27847080..27847150, 27847459..27847578,27847899..27847984,27848067..27848139, 27848228..27848848,27849336..27849434,27849535..27849662, 27850767..27851535,27852499..27852562,27852664..27852796, 27853153..27853252,27853479..27853606,27854440..27857085)) /locus_tag="TCM_015416" /product="Transcription factor jumonji domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038553001" /inference="similar to AA sequence:ricco:30024.m001705" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7832t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7832t3" mRNA complement(join(27845741..27847165,27847459..27847578, 27847899..27847984,27848067..27848139,27848226..27848586, 27848677..27848848,27849336..27849662,27850767..27851535, 27852499..27852562,27852664..27852796,27853153..27853252, 27853479..27853606,27854440..27857085)) /locus_tag="TCM_015416" /product="Transcription factor jumonji domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038553001" /inference="similar to AA sequence:ricco:30024.m001705" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7832t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7832t3" mRNA complement(join(27845741..27847150,27847459..27847578, 27847899..27847984,27848067..27848139,27848228..27848848, 27849336..27849662,27850767..27851535,27852499..27852562, 27852664..27852796,27853153..27853252,27853479..27853606, 27854440..27857085)) /locus_tag="TCM_015416" /product="Transcription factor jumonji domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038553001" /inference="similar to AA sequence:ricco:30024.m001705" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7832t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7832t3" mRNA complement(join(27846195..27847150,27847459..27847984, 27848067..27848139,27848228..27848848,27849336..27849662, 27850767..27851535,27852499..27852562,27852664..27852796, 27853153..27853252,27853479..27853606,27854440..27856065)) /locus_tag="TCM_015416" /product="Transcription factor jumonji domain-containing protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038553001" /inference="similar to AA sequence:ricco:30024.m001705" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc487t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7832t3" CDS complement(join(27847076..27847150,27847459..27847578, 27847899..27847984,27848067..27848139,27848228..27848848, 27849336..27849662,27850767..27851535,27852499..27852562, 27852664..27852796,27853153..27853252,27853479..27853606, 27854440..27856992)) /locus_tag="TCM_015416" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30024.m001705" /codon_start=1 /product="Transcription factor jumonji domain-containing protein, putative isoform 1" /protein_id="EOY23556.1" /db_xref="TAIR:AT4G00990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H781" /translation="MDDNQHQYQRCNRRGTPNWRCSGRALTGKSLCHKHYLYSLQSCG KKVDMENIGESGSEGGTQMCTQRKKRKRQVIGQGSINPVVVDEVREHDGNEQVKVTAG NDGDQGTQSWFVEGSGGVESVLEWFGEDGGVNGGETLKLWGVEAGFGLAIGGSGEATP GVQGGFGGETGGHNGEVVDCKGCNPWFGVDGIFGSLGGGEIQMGGSGGVPFGNGGMGL ADGLIQGLFSGPNEGLNVGVEGTQCFSGEAEYDNVEGKGIQGLFDEIACGNGCETHLA GEGNRGQGGYFENAGMHRGSKDGGGQVKVKRGRPKGSKNKKKILAAEQSTEGLSDSKV KKQGPLKGSKKIQKSLSGECHNGGDDIGRRKENLDQEMVSKEEKEDVAVEANETVQLK TKRGRPKGSKNKKKIVAAEQRIEGLSEVGGDGKLGNEIVCAIEKQGPPKGSKKKEISL PGENQDMSCHIVGGNNDGGDQTLRPMFWEKEKTTFLRAGDGVMPCEVAGNDAGRNNAG KRIEKQGQQQGPKKEKKNLAGEVSENAQLKGRHGGPKSAKNQKKIIVEENRDKSGKAE GGEGAVGIQNGNNNVLPKKNRGRPKGSKNKQKRRSDEKIGLSSVQQTLQSKDKQCFLE ISKDNKENNEGSETQGVPVEIVGVYYGDKGPVLVRTALVREEDKVMPGEAITGGCEMN SLVDKEGRGLPIERSGANEGKNEIIGPKVKDWRVEDLKNKEPTITAKEESHQSGEAIG KNDSGNEGLKRKRGRPKGSKNKRTLFLGMVSVRKKYKINKSCAQIEQGEGNNLKMSHN VSGKHLQGSLNMKKKTLAAGIRGSLTADFGNAQKKSRGRKKKSSSQSETSVSSDDTSQ KHVRRGLMCHQCWRTDRSVVNCSKCKRKRYCYECLAKWYPEKTREEVEAACPFCRGNC NCRLCLREKLVVMDEHEEADTSIKLQKLLYLLHKILPLLRHVQQEQHAELELETSIRG VQLTEQDIMVSVLDDDDRVYCDNCNTSIVNFHRSCPNPDCSYDLCITCCHEIRKGSQP GGNEAKFSHQQSVERVNSQGADSDDQIPTVTVRCDWKSLVSTECTSGMSCNSLDWRAE ADGRIPCPPKGRGGCGSETLSLRRFFGANLVDQLIQNAEELTVNFQLPDIEFSEGCSM CHTSSSAGNEADNFEVRQAAYRENSHDNFVYCPNVIQLEDNNIQHFQMHWMRGEPVIV RNVLEKSYGLSWEPMVMWRAFIGAKKILKEEAKRVKAIDCLDWCEVEINIRRFFKGYL EGRRYRNGWPEMLKLKDWPASNSFEECLPRHGAEFIAMLPFKDYTHPNSGILNLATKL PAVLKPDLGPKTYIAYGSLKELGRGDSVTKLHCDISDAVNVLTHATDVKIPPWQTKII DKLQKKYEAENMHPRCCGQTRKVSQILGRKRRKRPHKGGSKNPEYSAKLDNLAGKIED VAECSFSLPGVDTCSNSAAIGELQSTHQLDSKHGMIEEMMCNQKHNHNIEGQTHNTVE GGSLNQNEDLGSVRPDTNTTRESVTENPSSDNAHGGAVWDIFRREDVPKLIEYLRKHQ KEFRHISNLPVNSVIHPIHDQTLYLSEKHKKQLKEEFNVEPWTFEQHVGEAVFIPAGC PHQVRNRQSCIKVALDFVSPDNVQECIRLTEEFRLLPKTHRAKEDKLEVKKMAIYAAT LAVSEAKKLSANLK" mRNA complement(join(27847123..27847165,27847459..27847578, 27847899..27847984,27848067..27848139,27848228..27848848, 27849336..27849662,27850767..27851535,27852499..27852562, 27852664..27852796,27853153..27853252,27853479..27853606, 27854440..27856065)) /locus_tag="TCM_015416" /product="Transcription factor jumonji domain-containing protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038553001" /inference="similar to AA sequence:ricco:30024.m001705" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc487t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7832t3" CDS complement(join(27847151..27847165,27847459..27847578, 27847899..27847984,27848067..27848139,27848228..27848848, 27849336..27849662,27850767..27851535,27852499..27852562, 27852664..27852796,27853153..27853252,27853479..27853606, 27854440..27855879)) /locus_tag="TCM_015416" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30024.m001705" /codon_start=1 /product="Transcription factor jumonji domain-containing protein, putative isoform 5" /protein_id="EOY23560.1" /db_xref="TAIR:AT4G00990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H781" /translation="MVSKEEKEDVAVEANETVQLKTKRGRPKGSKNKKKIVAAEQRIE GLSEVGGDGKLGNEIVCAIEKQGPPKGSKKKEISLPGENQDMSCHIVGGNNDGGDQTL RPMFWEKEKTTFLRAGDGVMPCEVAGNDAGRNNAGKRIEKQGQQQGPKKEKKNLAGEV SENAQLKGRHGGPKSAKNQKKIIVEENRDKSGKAEGGEGAVGIQNGNNNVLPKKNRGR PKGSKNKQKRRSDEKIGLSSVQQTLQSKDKQCFLEISKDNKENNEGSETQGVPVEIVG VYYGDKGPVLVRTALVREEDKVMPGEAITGGCEMNSLVDKEGRGLPIERSGANEGKNE IIGPKVKDWRVEDLKNKEPTITAKEESHQSGEAIGKNDSGNEGLKRKRGRPKGSKNKR TLFLGMVSVRKKYKINKSCAQIEQGEGNNLKMSHNVSGKHLQGSLNMKKKTLAAGIRG SLTADFGNAQKKSRGRKKKSSSQSETSVSSDDTSQKHVRRGLMCHQCWRTDRSVVNCS KCKRKRYCYECLAKWYPEKTREEVEAACPFCRGNCNCRLCLREKLVVMDEHEEADTSI KLQKLLYLLHKILPLLRHVQQEQHAELELETSIRGVQLTEQDIMVSVLDDDDRVYCDN CNTSIVNFHRSCPNPDCSYDLCITCCHEIRKGSQPGGNEAKFSHQQSVERVNSQGADS DDQIPTVTVRCDWKSLVSTECTSGMSCNSLDWRAEADGRIPCPPKGRGGCGSETLSLR RFFGANLVDQLIQNAEELTVNFQLPDIEFSEGCSMCHTSSSAGNEADNFEVRQAAYRE NSHDNFVYCPNVIQLEDNNIQHFQMHWMRGEPVIVRNVLEKSYGLSWEPMVMWRAFIG AKKILKEEAKRVKAIDCLDWCEVEINIRRFFKGYLEGRRYRNGWPEMLKLKDWPASNS FEECLPRHGAEFIAMLPFKDYTHPNSGILNLATKLPAVLKPDLGPKTYIAYGSLKELG RGDSVTKLHCDISDAVNVLTHATDVKIPPWQTKIIDKLQKKYEAENMHPRCCGQTRKV SQILGRKRRKRPHKGGSKNPEYSAKLDNLAGKIEDVAECSFSLPGVDTCSNSAAIGEL QSTHQLDSKHGMIEEMMCNQKHNHNIEGQTHNTVEGGSLNQNEDLGSVRPDTNTTRES VTENPSSDNAHGGAVWDIFRREDVPKLIEYLRKHQKEFRHISNLPVNSVIHPIHDQTL YLSEKHKKQLKEEFNVEPWTFEQHVGEAVFIPAGCPHQVRNRQSCIKVALDFVSPDNV QECIRLTEEFRLLPKTHRAKEDKLEVIFV" CDS complement(join(27847833..27847984,27848067..27848139, 27848228..27848848,27849336..27849662,27850767..27851535, 27852499..27852562,27852664..27852796,27853153..27853252, 27853479..27853606,27854440..27855879)) /locus_tag="TCM_015416" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30024.m001705" /codon_start=1 /product="Transcription factor jumonji domain-containing protein, putative isoform 4" /protein_id="EOY23559.1" /db_xref="TAIR:AT4G00990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RSE9" /translation="MVSKEEKEDVAVEANETVQLKTKRGRPKGSKNKKKIVAAEQRIE GLSEVGGDGKLGNEIVCAIEKQGPPKGSKKKEISLPGENQDMSCHIVGGNNDGGDQTL RPMFWEKEKTTFLRAGDGVMPCEVAGNDAGRNNAGKRIEKQGQQQGPKKEKKNLAGEV SENAQLKGRHGGPKSAKNQKKIIVEENRDKSGKAEGGEGAVGIQNGNNNVLPKKNRGR PKGSKNKQKRRSDEKIGLSSVQQTLQSKDKQCFLEISKDNKENNEGSETQGVPVEIVG VYYGDKGPVLVRTALVREEDKVMPGEAITGGCEMNSLVDKEGRGLPIERSGANEGKNE IIGPKVKDWRVEDLKNKEPTITAKEESHQSGEAIGKNDSGNEGLKRKRGRPKGSKNKR TLFLGMVSVRKKYKINKSCAQIEQGEGNNLKMSHNVSGKHLQGSLNMKKKTLAAGIRG SLTADFGNAQKKSRGRKKKSSSQSETSVSSDDTSQKHVRRGLMCHQCWRTDRSVVNCS KCKRKRYCYECLAKWYPEKTREEVEAACPFCRGNCNCRLCLREKLVVMDEHEEADTSI KLQKLLYLLHKILPLLRHVQQEQHAELELETSIRGVQLTEQDIMVSVLDDDDRVYCDN CNTSIVNFHRSCPNPDCSYDLCITCCHEIRKGSQPGGNEAKFSHQQSVERVNSQGADS DDQIPTVTVRCDWKSLVSTECTSGMSCNSLDWRAEADGRIPCPPKGRGGCGSETLSLR RFFGANLVDQLIQNAEELTVNFQLPDIEFSEGCSMCHTSSSAGNEADNFEVRQAAYRE NSHDNFVYCPNVIQLEDNNIQHFQMHWMRGEPVIVRNVLEKSYGLSWEPMVMWRAFIG AKKILKEEAKRVKAIDCLDWCEVEINIRRFFKGYLEGRRYRNGWPEMLKLKDWPASNS FEECLPRHGAEFIAMLPFKDYTHPNSGILNLATKLPAVLKPDLGPKTYIAYGSLKELG RGDSVTKLHCDISDAVNVLTHATDVKIPPWQTKIIDKLQKKYEAENMHPRCCGQTRKV SQILGRKRRKRPHKGGSKNPEYSAKLDNLAGKIEDVAECSFSLPGVDTCSNSAAIGEL QSTHQLDSKHGMIEEMMCNQKHNHNIEGQTHNTVEGGSLNQNEDLGSVRPDTNTTRES VTENPSSDNAHGGAVWDIFRREDVPKLIEYLRKHQKEFRHISNLPVNSVIHPIHDQTL YLSEKHKKQLKEEFNVEPWTFEQHVGEAVFIPAGCPHQVRNRQVRILQHSVGLFLISL LHGNAR" CDS complement(join(27848079..27848139,27848226..27848586, 27848677..27848848,27849336..27849662,27850767..27851535, 27852499..27852562,27852664..27852796,27853153..27853252, 27853479..27853606,27854440..27856992)) /locus_tag="TCM_015416" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30024.m001705" /codon_start=1 /product="Transcription factor jumonji domain-containing protein, putative isoform 3" /protein_id="EOY23558.1" /db_xref="TAIR:AT4G00990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RSE9" /translation="MDDNQHQYQRCNRRGTPNWRCSGRALTGKSLCHKHYLYSLQSCG KKVDMENIGESGSEGGTQMCTQRKKRKRQVIGQGSINPVVVDEVREHDGNEQVKVTAG NDGDQGTQSWFVEGSGGVESVLEWFGEDGGVNGGETLKLWGVEAGFGLAIGGSGEATP GVQGGFGGETGGHNGEVVDCKGCNPWFGVDGIFGSLGGGEIQMGGSGGVPFGNGGMGL ADGLIQGLFSGPNEGLNVGVEGTQCFSGEAEYDNVEGKGIQGLFDEIACGNGCETHLA GEGNRGQGGYFENAGMHRGSKDGGGQVKVKRGRPKGSKNKKKILAAEQSTEGLSDSKV KKQGPLKGSKKIQKSLSGECHNGGDDIGRRKENLDQEMVSKEEKEDVAVEANETVQLK TKRGRPKGSKNKKKIVAAEQRIEGLSEVGGDGKLGNEIVCAIEKQGPPKGSKKKEISL PGENQDMSCHIVGGNNDGGDQTLRPMFWEKEKTTFLRAGDGVMPCEVAGNDAGRNNAG KRIEKQGQQQGPKKEKKNLAGEVSENAQLKGRHGGPKSAKNQKKIIVEENRDKSGKAE GGEGAVGIQNGNNNVLPKKNRGRPKGSKNKQKRRSDEKIGLSSVQQTLQSKDKQCFLE ISKDNKENNEGSETQGVPVEIVGVYYGDKGPVLVRTALVREEDKVMPGEAITGGCEMN SLVDKEGRGLPIERSGANEGKNEIIGPKVKDWRVEDLKNKEPTITAKEESHQSGEAIG KNDSGNEGLKRKRGRPKGSKNKRTLFLGMVSVRKKYKINKSCAQIEQGEGNNLKMSHN VSGKHLQGSLNMKKKTLAAGIRGSLTADFGNAQKKSRGRKKKSSSQSETSVSSDDTSQ KHVRRGLMCHQCWRTDRSVVNCSKCKRKRYCYECLAKWYPEKTREEVEAACPFCRGNC NCRLCLREKLVVMDEHEEADTSIKLQKLLYLLHKILPLLRHVQQEQHAELELETSIRG VQLTEQDIMVSVLDDDDRVYCDNCNTSIVNFHRSCPNPDCSYDLCITCCHEIRKGSQP GGNEAKFSHQQSVERVNSQGADSDDQIPTVTVRCDWKSLVSTECTSGMSCNSLDWRAE ADGRIPCPPKGRGGCGSETLSLRRFFGANLVDQLIQNAEELTVNFQLPDIEFSEGCSM CHTSSSAGNEADNFEVRQAAYRENSHDNFVYCPNVIQLEDNNIQHFQMHWMRGEPVIV RNVLEKSYGLSWEPMVMWRAFIGAKKILKEEAKRVKAIDCLDWCEVEINIRRFFKGYL EGRRYRNGWPEMLKLKDWPASNSFEECLPRHGAEFIAMLPFKDYTHPNSGILNLATKL PAVLKPDLGPKTYIAYGSLKELGRGDSVTKLHCDISDAVNVLTHATDVKIPPWQTKII DKLQKKYEAENMHPRCCGQTRKVSQILGRKRRKRPHKGVDTCSNSAAIGELQSTHQLD SKHGMIEEMMCNQKHNHNIEGQTHNTVEGGSLNQNEDLGSVRPDTNTTRESVTENPSS DNAHGGAVWDIFRREDVPKLIEYLRKHQKEFRHISNLPVNSVLFILFMIRPFISVRNI KSS" CDS complement(join(27849392..27849434,27849535..27849662, 27850767..27851535,27852499..27852562,27852664..27852796, 27853153..27853252,27853479..27853606,27854440..27856992)) /locus_tag="TCM_015416" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30024.m001705" /codon_start=1 /product="Transcription factor jumonji domain-containing protein, putative isoform 2" /protein_id="EOY23557.1" /db_xref="TAIR:AT4G00990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H781" /translation="MDDNQHQYQRCNRRGTPNWRCSGRALTGKSLCHKHYLYSLQSCG KKVDMENIGESGSEGGTQMCTQRKKRKRQVIGQGSINPVVVDEVREHDGNEQVKVTAG NDGDQGTQSWFVEGSGGVESVLEWFGEDGGVNGGETLKLWGVEAGFGLAIGGSGEATP GVQGGFGGETGGHNGEVVDCKGCNPWFGVDGIFGSLGGGEIQMGGSGGVPFGNGGMGL ADGLIQGLFSGPNEGLNVGVEGTQCFSGEAEYDNVEGKGIQGLFDEIACGNGCETHLA GEGNRGQGGYFENAGMHRGSKDGGGQVKVKRGRPKGSKNKKKILAAEQSTEGLSDSKV KKQGPLKGSKKIQKSLSGECHNGGDDIGRRKENLDQEMVSKEEKEDVAVEANETVQLK TKRGRPKGSKNKKKIVAAEQRIEGLSEVGGDGKLGNEIVCAIEKQGPPKGSKKKEISL PGENQDMSCHIVGGNNDGGDQTLRPMFWEKEKTTFLRAGDGVMPCEVAGNDAGRNNAG KRIEKQGQQQGPKKEKKNLAGEVSENAQLKGRHGGPKSAKNQKKIIVEENRDKSGKAE GGEGAVGIQNGNNNVLPKKNRGRPKGSKNKQKRRSDEKIGLSSVQQTLQSKDKQCFLE ISKDNKENNEGSETQGVPVEIVGVYYGDKGPVLVRTALVREEDKVMPGEAITGGCEMN SLVDKEGRGLPIERSGANEGKNEIIGPKVKDWRVEDLKNKEPTITAKEESHQSGEAIG KNDSGNEGLKRKRGRPKGSKNKRTLFLGMVSVRKKYKINKSCAQIEQGEGNNLKMSHN VSGKHLQGSLNMKKKTLAAGIRGSLTADFGNAQKKSRGRKKKSSSQSETSVSSDDTSQ KHVRRGLMCHQCWRTDRSVVNCSKCKRKRYCYECLAKWYPEKTREEVEAACPFCRGNC NCRLCLREKLVVMDEHEEADTSIKLQKLLYLLHKILPLLRHVQQEQHAELELETSIRG VQLTEQDIMVSVLDDDDRVYCDNCNTSIVNFHRSCPNPDCSYDLCITCCHEIRKGSQP GGNEAKFSHQQSVERVNSQGADSDDQIPTVTVRCDWKSLVSTECTSGMSCNSLDWRAE ADGRIPCPPKGRGGCGSETLSLRRFFGANLVDQLIQNAEELTVNFQLPDIEFSEGCSM CHTSSSAGNEADNFEVRQAAYRENSHDNFVYCPNVIQLEDNNIQHFQMHWMRGEPVIV RNVLEKSYGLSWEPMVMWRAFIGAKKILKEEAKRVKAIDCLDWCEVEINIRRFFKGYL EGRRYRNGWPEMLKLKDWPASNSFEECLPSRIWGPKLTLLMDL" gene 27853924..27854464 /locus_tag="TCM_015417" /note="dbxref CacaoGD:Thecc1EG015417" mRNA 27853924..27854464 /locus_tag="TCM_015417" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc306t15_C1" CDS 27853953..27854177 /locus_tag="TCM_015417" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23561.1" /translation="MPLKRNVTCPYSKEPIYTHLRTPQPEQKNIKSGGGDREKGNNLL PRNYHCSLFKYFGNFLWHSEVIPNVHPFSF" gene complement(27857200..27859532) /locus_tag="TCM_015418" /note="dbxref CacaoGD:Thecc1EG015418" mRNA complement(join(27857200..27858438,27858532..27858609, 27859125..27859188,27859330..27859387,27859482..27859532)) /locus_tag="TCM_015418" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30024.m001703" /inference="similar to AA sequence:frave:gene12875" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc387t1" CDS complement(join(27858013..27858438,27858532..27858609, 27859125..27859188,27859330..27859387,27859482..27859503)) /locus_tag="TCM_015418" /note="dbxref frave:gene12875" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23562.1" /db_xref="TAIR:AT4G22000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65448" /translation="MDRRITQDHGEPGIDRRHPSVLNMDTSIFSLAFKCCTFSGSGAS AIKRFPPVFLEHLPCRFSRRKHFLCFIPSPDPKGGGKKQLFLMAGKAAQSVVKAMGEY QYPWREKLAKYKVELSKGVWGYWELGAWKPLGISARRRARLRKEVLSAGQDWPYDPQR KEMRTKMKGHKCDRISAEKRENTANLMQKMPEMLLAYKKRRWEKKMKEEEKLKEK" gene complement(27859001..27863563) /locus_tag="TCM_015419" /note="dbxref CacaoGD:Thecc1EG015419" mRNA complement(join(27859001..27859387,27859482..27859646, 27859763..27859988,27860469..27860789,27860885..27861076, 27861492..27861729,27862174..27862288,27862470..27862613, 27863343..27863563)) /locus_tag="TCM_015419" /product="Defective in meristem silencing 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038554001" /inference="similar to AA sequence:Phytozome:POPTR_0012s02300.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc865t3" CDS complement(join(27859611..27859646,27859763..27859988, 27860469..27860789,27860885..27861076,27861492..27861729, 27862174..27862288,27862470..27862613,27863343..27863483)) /locus_tag="TCM_015419" /codon_start=1 /product="Defective in meristem silencing 3" /protein_id="EOY23563.1" /db_xref="Phytozome:POPTR_0012s02300.1" /db_xref="TAIR:AT3G49250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5C9" /translation="MHRKPGTSSKFNSHCPLFPEEKNQETEGEKLRGEPKRHSAMFSS NHQFPNQPKPLAVMDPTTPMQVDQNEASSVARDEMRIGGFSHAKSIIQSSEKLQDDLR MLGLKIKHHEDNIKLLKIQKNKLDDSILDMQVMRGKYHSSSAPKIGNENCSHLQSEEE TTEQILRHGKSAAGILCQLKIHNATQASYLTLTRDVLGAVATLGKVDDENLSWLFSEY LGVQTMMAIVCKTYESVRALETYNQDGCIDKTSGLHRLGASIGRAIDGRFHVICLESL RPYAGDFVADDPQRRLDLLKPRLPNGECPPGFLGFAVNMIQVDSSNLFCVTASGDGLR ETLFYNLFSRLQVYRTRAEMVLALPCISEGAVSLDGGMIRSSGVFSFGNREEVDVRFP KPSAKSDVPQNYIETEKQMKEMTWRKEKLEEDMKREQALLDNAKFNFERKKQDFVKFL AQSSSFATQFQATQDRLTPR" gene complement(27863611..27884213) /locus_tag="TCM_015420" /note="dbxref CacaoGD:Thecc1EG015420" mRNA complement(join(27863611..27864548,27864818..27865138, 27865249..27865440,27865553..27865766,27866974..27867088, 27867177..27867311,27867388..27867669,27867764..27867849, 27868547..27868613,27868879..27868977,27870173..27870267, 27870388..27870496,27870616..27870793,27871034..27871143, 27871256..27871576,27871814..27871930,27872030..27872138, 27872276..27872297,27872422..27872580,27872771..27872953, 27873044..27873119,27873776..27873810,27873917..27874007, 27874813..27874941,27875009..27875070,27875189..27875318, 27875623..27875673,27876754..27876840,27877739..27877807, 27877964..27878069,27878162..27878217,27878682..27878754, 27879487..27879570,27880168..27880223,27880312..27880398, 27880564..27880596,27880724..27881317,27883724..27884213)) /locus_tag="TCM_015420" /product="Gamma-irradiation and mitomycin c induced 1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038555001" /inference="similar to AA sequence:Phytozome:GSVIVT01038555001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1729t13" mRNA complement(join(27863611..27864548,27864818..27865138, 27865249..27865766,27866974..27867088,27867177..27867311, 27867388..27867669,27867764..27867849,27868547..27868613, 27868879..27868977,27870173..27870267,27870388..27870496, 27870616..27870793,27871034..27871143,27871256..27871576, 27871814..27871930,27872030..27872138,27872276..27872297, 27872422..27872580,27872771..27872953,27873044..27873119, 27873776..27873810,27873917..27874007,27874813..27874941, 27875009..27875070,27875189..27875318,27875623..27875673, 27876754..27876840,27877739..27877807,27877964..27878069, 27878162..27878217,27878682..27878754,27879487..27879570, 27880168..27880223,27880312..27880398,27880564..27880596, 27880724..27881317,27883724..27884213)) /locus_tag="TCM_015420" /product="Gamma-irradiation and mitomycin c induced 1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038555001" /inference="similar to AA sequence:Phytozome:GSVIVT01038555001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b014896t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1729t13" mRNA complement(join(27864056..27864548,27864818..27865140, 27865552..27865766,27866974..27867088,27867177..27867311, 27867388..27867669,27867764..27867849,27868547..27868613, 27868879..27868977,27870173..27870267,27870388..27870496, 27870616..27870793,27871034..27871143,27871256..27871576, 27871814..27871930,27872030..27872138,27872276..27872297, 27872422..27872580,27872771..27872953,27873044..27873119, 27873776..27873810,27873917..27874007,27874813..27874941, 27875009..27875070,27875189..27875318,27875623..27875673, 27876754..27876840,27877739..27877807,27877964..27878069, 27878162..27878217,27878682..27878754,27879487..27879570, 27880168..27880223,27880312..27880398,27880564..27880596, 27880724..27881215)) /locus_tag="TCM_015420" /product="Gamma-irradiation and mitomycin c induced 1, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038555001" /inference="similar to AA sequence:Phytozome:GSVIVT01038555001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc755t20; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1729t13; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1004t16_C1" mRNA complement(join(27864056..27864548,27864818..27865138, 27865249..27865440,27865553..27865766,27866974..27867088, 27867177..27867669,27867764..27867849,27868547..27868613, 27868879..27868977,27870173..27870267,27870388..27870496, 27870616..27870793,27871034..27871143,27871256..27871576, 27871814..27871930,27872030..27872138,27872276..27872297, 27872422..27872580,27872771..27872953,27873044..27873119, 27873776..27873810,27873917..27874007,27874813..27874941, 27875009..27875070,27875189..27875318,27875623..27875673, 27876754..27876840,27877739..27877807,27877964..27878069, 27878162..27878217,27878682..27878754,27879487..27879570, 27880168..27880223,27880312..27880398,27880564..27880596, 27880724..27881146)) /locus_tag="TCM_015420" /product="Gamma-irradiation and mitomycin c induced 1, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038555001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015389t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038555001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1729t8; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1729t13; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1004t16_C1" mRNA complement(join(27864071..27864548,27864818..27865138, 27865249..27865440,27865553..27865766,27866974..27867088, 27867177..27867311,27867388..27867669,27867764..27867849, 27868547..27868613,27868879..27868977,27870173..27870267, 27870388..27870496,27870616..27870793,27871034..27871143, 27871256..27871576,27871814..27871930,27872030..27872138, 27872276..27872297,27872422..27872580,27872771..27872953, 27873044..27873119,27873776..27873810,27873917..27874007, 27874813..27874941,27875009..27875070,27875189..27875318, 27875620..27875673,27876754..27876840,27877739..27877807, 27877964..27878069,27878162..27878217,27878682..27878754, 27879487..27879570,27880168..27880223,27880312..27880398, 27880564..27880596,27880724..27881229)) /locus_tag="TCM_015420" /product="Gamma-irradiation and mitomycin c induced 1, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038555001" /inference="similar to AA sequence:Phytozome:GSVIVT01038555001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7870t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1729t13; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1004t16_C1" CDS complement(join(27864278..27864548,27864818..27865138, 27865249..27865440,27865553..27865766,27866974..27867088, 27867177..27867311,27867388..27867669,27867764..27867849, 27868547..27868613,27868879..27868977,27870173..27870267, 27870388..27870496,27870616..27870793,27871034..27871143, 27871256..27871576,27871814..27871930,27872030..27872138, 27872276..27872297,27872422..27872580,27872771..27872953, 27873044..27873119,27873776..27873810,27873917..27874007, 27874813..27874941,27875009..27875070,27875189..27875318, 27875623..27875673,27876754..27876840,27877739..27877807, 27877964..27878069,27878162..27878217,27878682..27878754, 27879487..27879570,27880168..27880223,27880312..27880398, 27880564..27880596,27880724..27881101)) /locus_tag="TCM_015420" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Gamma-irradiation and mitomycin c induced 1, putative isoform 1" /protein_id="EOY23564.1" /db_xref="Phytozome:GSVIVT01038555001" /db_xref="TAIR:AT5G24280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H783" /translation="MQSQFNAMEDKFHRRASKRPLVLEDEDDADGSNEVYRFKVLLPN GTSVDLSLKNQKPEISFEDFIDLIRVEYDYIVRSQRQSVKRKRIINWNSEKLYLEGDM GGKIMSRIKLRHFKPLKCHILRLHDGSGEVANTYENMWDLTPDTDLLMELPEEYTFET ALADLIDNSLQAVWLNGKNERRLISVNVLENTISIFDTGPGMDSSDENSIVKWGKMGA SLNRLSKVQAIGCKPPYLMPFFGMFGYGGPIASMHLGSCAIVSSKTKESKKVYTLQIA REALLNNSNPERCWRTDGGIRDASEDEIEKSPHQSFTKVEILKPKQKNLDIFKLQCKL KDTYFPYIQCDELSKVGRTITPVEFQVNGVDLTEIDGGEAAITNLLSCNGPEFSILLH FSLRRENVATKGSKASQEANARLKCIYFPIRQGKENIERILERLGAEGCGVRENYEDF SRVSIRRLGRLLPDARWALLPFMDLRQRKGDKSHLLKRCCLRVKCFVETDAGFNPTPS KTDLAHHNPFSIALKNFGSRHVEKEKDVDVDIYRGGKQLTFLQLEREYQDWLLLMHDS YDEEIVSGEDQPVLVVGPLNKKALGISSDVIRVHKILKRKGVLWKRRQRIKVLKGACA GFHKNNVYATLEYFLIEGFQGDFGGEARIICRPLGLSNGSILSVKDGNASFDIRSSLS LPVSVIDSGKCLAIDDTDWDCQLEKQCQKAPSRIDLLNAKQCQELEVDGALPADATVH AGLVPPKEIVAVLRPRSFGSSSASNDLEQKDILKINLEMSMEVNFRRTKNHQDVKHIY SGRITPSSHKGFNGLYVFPIGSKFTHLFQVAGLYTFLFSIEHSGCQDCKKTLLVVPSL KVGKWRLLSDGKIPSYNVRVGSCFALIPIACYDIYGNRMPFSSIPNFKIKLVMNEGML VDVTQMKPSLSSDNLVLNIEDVMIESNGLDSMRPHYAATLVIYSKDESVSISVECQVT PGALRNVRACPEVLGNQLLPGFIIEQLVLEMFDAYGNHVAEGAEVQFHLDGFVIQGHL GSKYKVDDRGCIDLGGLLEVTAGYGKSVSLSVLHDGKVVFKREFQTEKRELRIASVVP ERCIAGSILEDLAFEVVDSQGVVDETFHDDEKHGQSHRLIVNSESFETCDSICYAFIH GCCIVTSIPLPEIEGPFCFVAFHSRYMDLYLNVKVSLVRPRKVESDEIEYPSDQKGLF LQKSQSVKDVGCLLSLVKYDKELEDEVCKYGERIAKWEHLLETLDCRKASIERYVSGL QASLEPNLIDNLDSLSTKEEMMIRIKERDHSAASVLCSLAQKLPFQEPWMDVIEGLVG VVALLGTVCTSKLSRILAEYLGEDQMLAVVCKSYTAARALEKYEHNGKVDWKLGLHAE ATALGKSISGRFLVVCLEDIRPYPGLIEVSDPQRKLALPDPRLPTGNTPPGFIGYAVN MVNIDHPHLENLTTAGHGLRETLFYRLFSKLQVYETREHMENARACIKHSAISLDGGI LRKNGIISLGYRNPEIHFPVQMHVSQQHKEIMEQIKKMKLELRSILQHIERISENHAK ASKKFNKRKMKLEKCMDRMDSTIKYYHVEYAPNTLKSEEAPPM" CDS complement(join(27864278..27864548,27864818..27865140, 27865552..27865766,27866974..27867088,27867177..27867311, 27867388..27867669,27867764..27867849,27868547..27868613, 27868879..27868977,27870173..27870267,27870388..27870496, 27870616..27870793,27871034..27871143,27871256..27871576, 27871814..27871930,27872030..27872138,27872276..27872297, 27872422..27872580,27872771..27872953,27873044..27873119, 27873776..27873810,27873917..27874007,27874813..27874941, 27875009..27875070,27875189..27875318,27875623..27875673, 27876754..27876840,27877739..27877807,27877964..27878069, 27878162..27878217,27878682..27878754,27879487..27879570, 27880168..27880223,27880312..27880398,27880564..27880596, 27880724..27881101)) /locus_tag="TCM_015420" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Gamma-irradiation and mitomycin c induced 1, putative isoform 5" /protein_id="EOY23568.1" /db_xref="Phytozome:GSVIVT01038555001" /db_xref="TAIR:AT5G24280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H783" /translation="MQSQFNAMEDKFHRRASKRPLVLEDEDDADGSNEVYRFKVLLPN GTSVDLSLKNQKPEISFEDFIDLIRVEYDYIVRSQRQSVKRKRIINWNSEKLYLEGDM GGKIMSRIKLRHFKPLKCHILRLHDGSGEVANTYENMWDLTPDTDLLMELPEEYTFET ALADLIDNSLQAVWLNGKNERRLISVNVLENTISIFDTGPGMDSSDENSIVKWGKMGA SLNRLSKVQAIGCKPPYLMPFFGMFGYGGPIASMHLGSCAIVSSKTKESKKVYTLQIA REALLNNSNPERCWRTDGGIRDASEDEIEKSPHQSFTKVEILKPKQKNLDIFKLQCKL KDTYFPYIQCDELSKVGRTITPVEFQVNGVDLTEIDGGEAAITNLLSCNGPEFSILLH FSLRRENVATKGSKASQEANARLKCIYFPIRQGKENIERILERLGAEGCGVRENYEDF SRVSIRRLGRLLPDARWALLPFMDLRQRKGDKSHLLKRCCLRVKCFVETDAGFNPTPS KTDLAHHNPFSIALKNFGSRHVEKEKDVDVDIYRGGKQLTFLQLEREYQDWLLLMHDS YDEEIVSGEDQPVLVVGPLNKKALGISSDVIRVHKILKRKGVLWKRRQRIKVLKGACA GFHKNNVYATLEYFLIEGFQGDFGGEARIICRPLGLSNGSILSVKDGNASFDIRSSLS LPVSVIDSGKCLAIDDTDWDCQLEKQCQKAPSRIDLLNAKQCQELEVDGALPADATVH AGLVPPKEIVAVLRPRSFGSSSASNDLEQKDILKINLEMSMEVNFRRTKNHQDVKHIY SGRITPSSHKGFNGLYVFPIGSKFTHLFQVAGLYTFLFSIEHSGCQDCKKTLLVVPSL KVGKWRLLSDGKIPSYNVRVGSCFALIPIACYDIYGNRMPFSSIPNFKIKLVMNEGML VDVTQMKPSLSSDNLVLNIEDVMIESNGLDSMRPHYAATLVIYSKDESVSISVECQVT PGALRNVRACPEVLGNQLLPGFIIEQLVLEMFDAYGNHVAEGAEVQFHLDGFVIQGHL GSKYKVDDRGCIDLGGLLEVTAGYGKSVSLSVLHDGKVVFKREFQTEKRELRIASVVP ERCIAGSILEDLAFEVVDSQGVVDETFHDDEKHGQSHRLIVNSESFETCDSICYAFIH GCCIVTSIPLPEIEGPFCFVAFHSRYMDLYLNVKVSLVRPRKVESDEIEYPSDQKGLF LQKSQSVKDVGCLLSLVKYDKELEDEVCKYGERIAKWEHLLETLDCRKASIERYVSGL QASLEPNLIDNLDSLSTKEEMMIRIKERDHSAASVLCSLAQKLPFQEPWMDVIEGLVG VVALLGTVCTSKLSRRPYPGLIEVSDPQRKLALPDPRLPTGNTPPGFIGYAVNMVNID HPHLENLTTAGHGLRETLFYRLFSKLQVYETREHMENARACIKHSAISLDGGILRKNG IISLGYRNPEIHFPVQMHVSQQHKEIMEQIKKMKLELRSILQHIERISENHAKASKKF NKRKMKLEKCMDRMDSTIKYYHVEYAPNTLKSEEAPPM" CDS complement(join(27864278..27864548,27864818..27865138, 27865249..27865440,27865553..27865766,27866974..27867088, 27867177..27867311,27867388..27867669,27867764..27867849, 27868547..27868613,27868879..27868977,27870173..27870267, 27870388..27870496,27870616..27870793,27871034..27871143, 27871256..27871576,27871814..27871930,27872030..27872138, 27872276..27872297,27872422..27872580,27872771..27872953, 27873044..27873119,27873776..27873810,27873917..27874007, 27874813..27874941,27875009..27875070,27875189..27875318, 27875620..27875673,27876754..27876840,27877739..27877807, 27877964..27878069,27878162..27878217,27878682..27878754, 27879487..27879570,27880168..27880223,27880312..27880398, 27880564..27880596,27880724..27881101)) /locus_tag="TCM_015420" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Gamma-irradiation and mitomycin c induced 1, putative isoform 3" /protein_id="EOY23566.1" /db_xref="Phytozome:GSVIVT01038555001" /db_xref="TAIR:AT5G24280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H783" /translation="MQSQFNAMEDKFHRRASKRPLVLEDEDDADGSNEVYRFKVLLPN GTSVDLSLKNQKPEISFEDFIDLIRVEYDYIVRSQRQSVKRKRIINWNSEKLYLEGDM GGKIMSRIKLRHFKPLKCHILRLHDGSGEVANTYENMWDLTPDTDLLMELPEEYTFET ALADLIDNSLQAVWLNGKNERRLISVNVLENTISIFDTGPGMDSSDENSIVKWGKMGA SLNRLSKVQAIGCKPPYLMPFFGMFGYGGPIASMHLGSCAIVSSKTKESKKVYTLQIA REALLNNSNPERCWRTDGGIRDASEDEIEKSPHQSFTKVEILKPKQKNLDIFKLQCKL KDTYFPYIQCDELSKVGRTITPVEFQVVNGVDLTEIDGGEAAITNLLSCNGPEFSILL HFSLRRENVATKGSKASQEANARLKCIYFPIRQGKENIERILERLGAEGCGVRENYED FSRVSIRRLGRLLPDARWALLPFMDLRQRKGDKSHLLKRCCLRVKCFVETDAGFNPTP SKTDLAHHNPFSIALKNFGSRHVEKEKDVDVDIYRGGKQLTFLQLEREYQDWLLLMHD SYDEEIVSGEDQPVLVVGPLNKKALGISSDVIRVHKILKRKGVLWKRRQRIKVLKGAC AGFHKNNVYATLEYFLIEGFQGDFGGEARIICRPLGLSNGSILSVKDGNASFDIRSSL SLPVSVIDSGKCLAIDDTDWDCQLEKQCQKAPSRIDLLNAKQCQELEVDGALPADATV HAGLVPPKEIVAVLRPRSFGSSSASNDLEQKDILKINLEMSMEVNFRRTKNHQDVKHI YSGRITPSSHKGFNGLYVFPIGSKFTHLFQVAGLYTFLFSIEHSGCQDCKKTLLVVPS LKVGKWRLLSDGKIPSYNVRVGSCFALIPIACYDIYGNRMPFSSIPNFKIKLVMNEGM LVDVTQMKPSLSSDNLVLNIEDVMIESNGLDSMRPHYAATLVIYSKDESVSISVECQV TPGALRNVRACPEVLGNQLLPGFIIEQLVLEMFDAYGNHVAEGAEVQFHLDGFVIQGH LGSKYKVDDRGCIDLGGLLEVTAGYGKSVSLSVLHDGKVVFKREFQTEKRELRIASVV PERCIAGSILEDLAFEVVDSQGVVDETFHDDEKHGQSHRLIVNSESFETCDSICYAFI HGCCIVTSIPLPEIEGPFCFVAFHSRYMDLYLNVKVSLVRPRKVESDEIEYPSDQKGL FLQKSQSVKDVGCLLSLVKYDKELEDEVCKYGERIAKWEHLLETLDCRKASIERYVSG LQASLEPNLIDNLDSLSTKEEMMIRIKERDHSAASVLCSLAQKLPFQEPWMDVIEGLV GVVALLGTVCTSKLSRILAEYLGEDQMLAVVCKSYTAARALEKYEHNGKVDWKLGLHA EATALGKSISGRFLVVCLEDIRPYPGLIEVSDPQRKLALPDPRLPTGNTPPGFIGYAV NMVNIDHPHLENLTTAGHGLRETLFYRLFSKLQVYETREHMENARACIKHSAISLDGG ILRKNGIISLGYRNPEIHFPVQMHVSQQHKEIMEQIKKMKLELRSILQHIERISENHA KASKKFNKRKMKLEKCMDRMDSTIKYYHVEYAPNTLKSEEAPPM" CDS complement(join(27865429..27865766,27866974..27867088, 27867177..27867311,27867388..27867669,27867764..27867849, 27868547..27868613,27868879..27868977,27870173..27870267, 27870388..27870496,27870616..27870793,27871034..27871143, 27871256..27871576,27871814..27871930,27872030..27872138, 27872276..27872297,27872422..27872580,27872771..27872953, 27873044..27873119,27873776..27873810,27873917..27874007, 27874813..27874941,27875009..27875070,27875189..27875318, 27875623..27875673,27876754..27876840,27877739..27877807, 27877964..27878069,27878162..27878217,27878682..27878754, 27879487..27879570,27880168..27880223,27880312..27880398, 27880564..27880596,27880724..27881101)) /locus_tag="TCM_015420" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Gamma-irradiation and mitomycin c induced 1, putative isoform 2" /protein_id="EOY23565.1" /db_xref="Phytozome:GSVIVT01038555001" /db_xref="TAIR:AT5G24280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H783" /translation="MQSQFNAMEDKFHRRASKRPLVLEDEDDADGSNEVYRFKVLLPN GTSVDLSLKNQKPEISFEDFIDLIRVEYDYIVRSQRQSVKRKRIINWNSEKLYLEGDM GGKIMSRIKLRHFKPLKCHILRLHDGSGEVANTYENMWDLTPDTDLLMELPEEYTFET ALADLIDNSLQAVWLNGKNERRLISVNVLENTISIFDTGPGMDSSDENSIVKWGKMGA SLNRLSKVQAIGCKPPYLMPFFGMFGYGGPIASMHLGSCAIVSSKTKESKKVYTLQIA REALLNNSNPERCWRTDGGIRDASEDEIEKSPHQSFTKVEILKPKQKNLDIFKLQCKL KDTYFPYIQCDELSKVGRTITPVEFQVNGVDLTEIDGGEAAITNLLSCNGPEFSILLH FSLRRENVATKGSKASQEANARLKCIYFPIRQGKENIERILERLGAEGCGVRENYEDF SRVSIRRLGRLLPDARWALLPFMDLRQRKGDKSHLLKRCCLRVKCFVETDAGFNPTPS KTDLAHHNPFSIALKNFGSRHVEKEKDVDVDIYRGGKQLTFLQLEREYQDWLLLMHDS YDEEIVSGEDQPVLVVGPLNKKALGISSDVIRVHKILKRKGVLWKRRQRIKVLKGACA GFHKNNVYATLEYFLIEGFQGDFGGEARIICRPLGLSNGSILSVKDGNASFDIRSSLS LPVSVIDSGKCLAIDDTDWDCQLEKQCQKAPSRIDLLNAKQCQELEVDGALPADATVH AGLVPPKEIVAVLRPRSFGSSSASNDLEQKDILKINLEMSMEVNFRRTKNHQDVKHIY SGRITPSSHKGFNGLYVFPIGSKFTHLFQVAGLYTFLFSIEHSGCQDCKKTLLVVPSL KVGKWRLLSDGKIPSYNVRVGSCFALIPIACYDIYGNRMPFSSIPNFKIKLVMNEGML VDVTQMKPSLSSDNLVLNIEDVMIESNGLDSMRPHYAATLVIYSKDESVSISVECQVT PGALRNVRACPEVLGNQLLPGFIIEQLVLEMFDAYGNHVAEGAEVQFHLDGFVIQGHL GSKYKVDDRGCIDLGGLLEVTAGYGKSVSLSVLHDGKVVFKREFQTEKRELRIASVVP ERCIAGSILEDLAFEVVDSQGVVDETFHDDEKHGQSHRLIVNSESFETCDSICYAFIH GCCIVTSIPLPEIEGPFCFVAFHSRYMDLYLNVKVSLVRPRKVESDEIEYPSDQKGLF LQKSQSVKDVGCLLSLVKYDKELEDEVCKYGERIAKWEHLLETLDCRKASIERYVSGL QASLEPNLIDNLDSLSTKEEMMIRIKERDHSAASVLCSLAQKLPFQEPWMDVIEGLVG VVALLGTVCTSKLSRLYLPFIFKDVYIKQNERLQKFSVTFSFSGFPWISLLQDFS" CDS complement(join(27867325..27867669,27867764..27867849, 27868547..27868613,27868879..27868977,27870173..27870267, 27870388..27870496,27870616..27870793,27871034..27871143, 27871256..27871576,27871814..27871930,27872030..27872138, 27872276..27872297,27872422..27872580,27872771..27872953, 27873044..27873119,27873776..27873810,27873917..27874007, 27874813..27874941,27875009..27875070,27875189..27875318, 27875623..27875673,27876754..27876840,27877739..27877807, 27877964..27878069,27878162..27878217,27878682..27878754, 27879487..27879570,27880168..27880223,27880312..27880398, 27880564..27880596,27880724..27881101)) /locus_tag="TCM_015420" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG015389t1" /codon_start=1 /product="Gamma-irradiation and mitomycin c induced 1, putative isoform 4" /protein_id="EOY23567.1" /db_xref="Phytozome:GSVIVT01038555001" /db_xref="TAIR:AT5G24280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H783" /translation="MQSQFNAMEDKFHRRASKRPLVLEDEDDADGSNEVYRFKVLLPN GTSVDLSLKNQKPEISFEDFIDLIRVEYDYIVRSQRQSVKRKRIINWNSEKLYLEGDM GGKIMSRIKLRHFKPLKCHILRLHDGSGEVANTYENMWDLTPDTDLLMELPEEYTFET ALADLIDNSLQAVWLNGKNERRLISVNVLENTISIFDTGPGMDSSDENSIVKWGKMGA SLNRLSKVQAIGCKPPYLMPFFGMFGYGGPIASMHLGSCAIVSSKTKESKKVYTLQIA REALLNNSNPERCWRTDGGIRDASEDEIEKSPHQSFTKVEILKPKQKNLDIFKLQCKL KDTYFPYIQCDELSKVGRTITPVEFQVNGVDLTEIDGGEAAITNLLSCNGPEFSILLH FSLRRENVATKGSKASQEANARLKCIYFPIRQGKENIERILERLGAEGCGVRENYEDF SRVSIRRLGRLLPDARWALLPFMDLRQRKGDKSHLLKRCCLRVKCFVETDAGFNPTPS KTDLAHHNPFSIALKNFGSRHVEKEKDVDVDIYRGGKQLTFLQLEREYQDWLLLMHDS YDEEIVSGEDQPVLVVGPLNKKALGISSDVIRVHKILKRKGVLWKRRQRIKVLKGACA GFHKNNVYATLEYFLIEGFQGDFGGEARIICRPLGLSNGSILSVKDGNASFDIRSSLS LPVSVIDSGKCLAIDDTDWDCQLEKQCQKAPSRIDLLNAKQCQELEVDGALPADATVH AGLVPPKEIVAVLRPRSFGSSSASNDLEQKDILKINLEMSMEVNFRRTKNHQDVKHIY SGRITPSSHKGFNGLYVFPIGSKFTHLFQVAGLYTFLFSIEHSGCQDCKKTLLVVPSL KVGKWRLLSDGKIPSYNVRVGSCFALIPIACYDIYGNRMPFSSIPNFKIKLVMNEGML VDVTQMKPSLSSDNLVLNIEDVMIESNGLDSMRPHYAATLVIYSKDESVSISVECQVT PGALRNVRACPEVLGNQLLPGFIIEQLVLEMFDAYGNHVAEGAEVQFHLDGFVIQGHL GSKYKVDDRGCIDLGGLLEVTAGYGKSVSLSVLHDGKVVFKREFQTEKRELRIASVVP ERCIAGSILEDLAFEVVDSQGVVDETFHDDEKHGQSHRLIVNSESFETCDSICYAFIH GCCIVTSIPLPEIEGPFCFVAFHSRYMDLYLNVKVVSCNDLVSILRLPVQHQNC" mobile_element 27881660..27889896 /note="source:CACAO_Helitron_S_E29_scaffold_3 1 8237" /mobile_element_type="transposon:Helitron" mobile_element complement(27890717..27890875) /note="source:CACAO_hAT_E410_scaffold_1 586 726" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(27896544..27896650) /note="source:scaffold_5_CACTA_0607 5146 5252" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27896648..27896727 /note="source:scaffold_1_CACTA_0005 6271 6357" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27896725..27896799 /note="source:scaffold_5_CACTA_0615 1717 1791" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27896989..27897342 /note="source:scaffold_5_CACTA_0607 4502 4854" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27897313..27897396) /note="source:CACAO_PIF_E119_scaffold_3 4372 4458" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 27899391..27899483 /note="source:CACAO_Again_on_E217_scaffold_10 2 103" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(27899470..27899540) /note="source:MITE_hAT_26 3 73" /mobile_element_type="transposon:TIR/MITE" gene 27900307..27904412 /locus_tag="TCM_015423" /note="dbxref CacaoGD:Thecc1EG015423" mRNA join(27900307..27900531,27900876..27900974, 27901995..27902288,27902949..27903314,27903434..27904412) /locus_tag="TCM_015423" /product="IQ-domain 21, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30024.m001702" /inference="similar to AA sequence:Phytozome:POPTR_0015s01480.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06254t00001" mRNA join(27900307..27900531,27900876..27900974, 27901995..27902288,27902949..27903314,27903437..27904412) /locus_tag="TCM_015423" /product="IQ-domain 21, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30024.m001702" /inference="similar to AA sequence:Phytozome:POPTR_0015s01480.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:PASA:2:TSA:puevd3b014898t1a2; inference alignment:Newbler:10:TSA:cgbaB_g06254t00001" CDS join(27900894..27900974,27901995..27902288, 27902949..27903314,27903434..27904057) /locus_tag="TCM_015423" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="IQ-domain 21, putative isoform 1" /protein_id="EOY23569.1" /db_xref="Phytozome:POPTR_0015s01480.1" /db_xref="TAIR:AT3G49260.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDQ3" /translation="MGKKGSGWFSTVKKVFKSSSKDLPEKKKDNNVEKWPNEAPEVVS FEHFPAESSPDLTNDESATSTPLHEDRSHAIAVAVATAAAAEAAVAAAQAAAKVVRLA GYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGYNVRKQAQMTMRCMQ ALVRVQARVRARRLRLTHENLQKTVDEDEEEIRGMEELERKPKSPLRKYDGWDGGHQS SEKVKESASKKHDAVMRRERALAYAYSYQQQQQHQQQPQQHQQLLMQPHPNGKDVDLY LNEREKAQWGWNWLERWMSSQPYHARQLGLQEGSYMTLPTTATTTATTDNMSEKTVEM DVVTQMESSPYSTQLQELQSGSNNVPSYMAPTQSAKAKVRSQGPVKQQRGSYLPQWNP STKKASNCDSSSSGGGTTIYQAPRSPGPKNNGARVPSGRLGGCSPDAGGGEDWRLPIA GHGW" CDS join(27900894..27900974,27901995..27902288, 27902949..27903314,27903437..27904057) /locus_tag="TCM_015423" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="IQ-domain 21, putative isoform 2" /protein_id="EOY23570.1" /db_xref="Phytozome:POPTR_0015s01480.1" /db_xref="TAIR:AT3G49260.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDQ3" /translation="MGKKGSGWFSTVKKVFKSSSKDLPEKKKDNNVEKWPNEAPEVVS FEHFPAESSPDLTNDESATSTPLHEDRSHAIAVAVATAAAAEAAVAAAQAAAKVVRLA GYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGYNVRKQAQMTMRCMQ ALVRVQARVRARRLRLTHENLQKTVDEDEEEIRGMEELERKPKSPLRKYDGWDGGHQS SEKVKESASKKHDAVMRRERALAYAYSYQQQQHQQQPQQHQQLLMQPHPNGKDVDLYL NEREKAQWGWNWLERWMSSQPYHARQLGLQEGSYMTLPTTATTTATTDNMSEKTVEMD VVTQMESSPYSTQLQELQSGSNNVPSYMAPTQSAKAKVRSQGPVKQQRGSYLPQWNPS TKKASNCDSSSSGGGTTIYQAPRSPGPKNNGARVPSGRLGGCSPDAGGGEDWRLPIAG HGW" gene 27905026..27913028 /locus_tag="TCM_015424" /note="dbxref CacaoGD:Thecc1EG015424" mRNA join(27905026..27905455,27907467..27907825, 27908001..27908078,27908178..27908302,27908899..27908980, 27909179..27909352,27909646..27909727,27910071..27910162, 27910252..27910314,27910397..27910486,27910993..27911117, 27911194..27911302,27911393..27911448,27911933..27911972, 27912180..27913028) /locus_tag="TCM_015424" /product="Glycogen/starch synthases isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038557001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018569t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s01470.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1560t4" mRNA join(27905060..27905455,27907467..27907825, 27908001..27908078,27908193..27908302,27908899..27908980, 27909179..27909352,27909646..27909727,27910071..27910162, 27910252..27910371) /locus_tag="TCM_015424" /product="Glycogen/starch synthases isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038557001" /inference="similar to AA sequence:Phytozome:POPTR_0015s01470.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1539t4_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1560t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1544t3_C1" CDS join(27905116..27905455,27907467..27907825, 27908001..27908078,27908178..27908302,27908899..27908980, 27909179..27909352,27909646..27909727,27910071..27910162, 27910252..27910314,27910397..27910486,27910993..27911117, 27911194..27911302,27911393..27911448,27911933..27911972, 27912180..27912338) /locus_tag="TCM_015424" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG018569t1" /codon_start=1 /product="Glycogen/starch synthases isoform 1" /protein_id="EOY23571.1" /db_xref="Phytozome:POPTR_0015s01470.1" /db_xref="TAIR:AT5G24300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNF2" /translation="MESLTLGRVLSCKLSTNISRKVCSFMPSKQLGFGHFLRRSFKNV KLTVVKSEESGNGGEFGGLADGSNSNAVEEEEEEEEEKKEDEKEKRGLMLGIDRDDSG SVIGLHLIPPSGDYEVIDSHEDVTTDTKEKDGEIEEEKPQTRITYNIVFVTAEAAPYS KSGGLGDVCGSLPVALAGRGHRVMVVSPRYLHGTPADKNIAGALDIDRRIKIYCFGGE QEVAFFHEYREGVDWVFVDHPSYHRPGNPYGDSHGAFGDNQFRFTLLCHAACEAPLVL PLGGYTYGEKCLFLVNDWHAGLVPVLLASKYHPFGVYKDARSILIIHNLAHQGVEPAA TFKNLGLPSDWYGALEWVFPTWARTHALDTGEAVNILKGAIVTADRILTVSKGYAWEI TTVEGGYGLHELLSSRRSVLNGIANGIDIAEWDPSSDEHIGFHYSADDLSGKVQCKTA LQKELALPIRPECPLIGFIGRLDYQKGIDLIRWATPELMEDDVQFVMLGSGDPLYEDW MRAAETTYRDKFRGWVGFNIPISHRITAGCDILLMPSRFEPCGLNQLYAMRYATVPVV HATGGLRDTVENFNPYAGGGNGDGTGWTFSPLTKESMLEALRMAILTYREHKLTWEGL MRRGLQRDCTWESAAVQYEQVFEWASIDPPYIM" CDS join(27905116..27905455,27907467..27907825, 27908001..27908078,27908193..27908302,27908899..27908980, 27909179..27909352,27909646..27909727,27910071..27910162, 27910252..27910341) /locus_tag="TCM_015424" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Glycogen/starch synthases isoform 2" /protein_id="EOY23572.1" /db_xref="Phytozome:POPTR_0015s01470.1" /db_xref="TAIR:AT5G24300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNF2" /translation="MESLTLGRVLSCKLSTNISRKVCSFMPSKQLGFGHFLRRSFKNV KLTVVKSEESGNGGEFGGLADGSNSNAVEEEEEEEEEKKEDEKEKRGLMLGIDRDDSG SVIGLHLIPPSGDYEVIDSHEDVTTDTKEKDGEIEEEKPQTRITYNIVFVTAEAAPYS KSGGLGDVCGSLPVALAGRGHRVMVVSPRYLHGTPADKNIAGALDIDRRIKIYCFGGE QEVAFFHEYREGVDWVFVDHPSYHRPGNPYGDSHGAFGDNQLCHAACEAPLVLPLGGY TYGEKCLFLVNDWHAGLVPVLLASKYHPFGVYKDARSILIIHNLAHQGVEPAATFKNL GLPSDWYGALEWVFPTWARTHALDTGEAVNILKGAIVTADRILTVSKGYAWEITTVEG GYGLHELLSSRRSVLNGIANGIDIAEWDPSSDEHIGFHYSADDLSGKVQCKTALQKEL ALPIRPECPLVRFYFLLE" mobile_element 27906537..27906662 /note="source:scaffold_5_CACTA_0580 5405 5528" /mobile_element_type="transposon:TIR/CACTA" gene 27913455..27914767 /locus_tag="TCM_015425" /note="dbxref CacaoGD:Thecc1EG015425" mRNA 27913455..27914767 /locus_tag="TCM_015425" /product="SNARE-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30024.m001698" /inference="similar to AA sequence:Phytozome:POPTR_0015s01460.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1921t2" CDS 27913502..27914284 /locus_tag="TCM_015425" /codon_start=1 /product="SNARE-like superfamily protein, putative" /protein_id="EOY23573.1" /db_xref="Phytozome:POPTR_0015s01460.1" /db_xref="TAIR:AT4G27840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDQ1" /translation="MISNPNLIFYACIAKGPTILAEFSSKEEGIKSLAQKCIEKTPPF HSMFSHTVSKRTYTFLIDGPFAYFIIFHEDLEKSESFWFLNRLKCAFEDFLETGLIVG TDNMTPTCLQSYFDPIFSEIMALDMELVTSPSKESQDPSLDSNKGKGTAVAPLLGSPS KGLKKKKRLSGLEVNGGEAKDAGGGIGMENKVDVADDFRDFPVSMQKSVGCYYMGGGD RQKAKQLWRKHVWVVLILDLVVCVTLFGIWLMVCRGFQCIDG" gene 27915696..27916576 /locus_tag="TCM_015426" /note="dbxref CacaoGD:Thecc1EG015426" mRNA 27915696..27916576 /locus_tag="TCM_015426" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.11 coverage" CDS 27916077..27916319 /locus_tag="TCM_015426" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23574.1" /translation="MLRFLFQVHSEKEKVTLGVEFTRAGFSNQHASLQSLPQFGGPIV VKQCCTKGIGISNQIMKHPHALRGLVLRDKGQLNFT" gene complement(27916622..27921250) /locus_tag="TCM_015427" /note="dbxref CacaoGD:Thecc1EG015427" mRNA complement(join(27916622..27917488,27917713..27917993, 27918798..27918869,27918975..27919010,27919852..27920013, 27920135..27920239,27920430..27920516,27920751..27920873, 27920954..27921250)) /locus_tag="TCM_015427" /product="2A phosphatase associated protein of 46 kD" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038559001" /inference="similar to AA sequence:Phytozome:GSVIVT01038559001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02589t00001" CDS complement(join(27917242..27917488,27917713..27917993, 27918798..27918869,27918975..27919010,27919852..27920013, 27920135..27920239,27920430..27920516,27920751..27920873, 27920954..27921049)) /locus_tag="TCM_015427" /codon_start=1 /product="2A phosphatase associated protein of 46 kD" /protein_id="EOY23575.1" /db_xref="Phytozome:GSVIVT01038559001" /db_xref="TAIR:AT5G53000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LDQ4" /translation="MGEGKMEDMPLPALFEQARKIHITATESGADQDLVKKGSEVLGK CEDMISKLGLFSSNETKDDISTTNLKYLLVPFYLAELMEKLVQDDRIQILKTSQSKLK EFISFCEAMELVPQEELEASAQGASNSFADRRALKIARFRRQRAAEAKLTEIKERKER RGRSTKAAALSTPVEAGEEDEQDDDGEEEREAWLTTILLAICKAFDLLEMLKKEEEML SAIKEKQLKEGEKGFSQAILDDRTKKAEAWHRDAAARARYTKPAPPITCATFAQDVIE GRANVSQAHDHKHQPMIFGPQSLIGGSLTNERQRMAAQVFQPGHRMPTMSIEEAGLRE MEMMNKWQERNAKMFEEANSAWYKDSPKLGPSEEDEDDDAAQEKARAWDDWKDDNPRG AGNKKLTPCG" mobile_element complement(27922800..27923611) /note="source:CACAO_MITE135_scaffold_9 1 831" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(27923465..27923642) /note="source:CACAO_PIF_E31_scaffold_2 4042 4220" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 27923496..27923664 /note="source:scaffold_4_CACTA_0483 6708 6872" /mobile_element_type="transposon:TIR/CACTA" gene 27925526..27930148 /locus_tag="TCM_015428" /note="dbxref CacaoGD:Thecc1EG015428" mRNA join(27925526..27926117,27926455..27927666, 27927896..27928809,27929082..27930148) /locus_tag="TCM_015428" /product="Ribonuclease P protein subunit P38-related isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038560001" /inference="similar to AA sequence:Phytozome:POPTR_0012s02370.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7912t2" mRNA join(27925977..27926117,27926455..27927666, 27927899..27928809,27929082..27929554) /locus_tag="TCM_015428" /product="Ribonuclease P protein subunit P38-related isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038560001" /inference="similar to AA sequence:Phytozome:POPTR_0012s02370.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7912t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7912t2" mRNA join(27926339..27927666,27927896..27928798, 27929082..27929562) /locus_tag="TCM_015428" /product="Ribonuclease P protein subunit P38-related isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038560001" /inference="similar to AA sequence:Phytozome:POPTR_0012s02370.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1684t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7912t2" CDS join(27926478..27927666,27927896..27928809, 27929082..27929420) /locus_tag="TCM_015428" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ribonuclease P protein subunit P38-related isoform 1" /protein_id="EOY23576.1" /db_xref="Phytozome:POPTR_0012s02370.1" /db_xref="TAIR:AT5G53020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CV56" /translation="MDEKGISGSYLIISEEKSDSLYPMYFGVSCAFFALRLLTGPEKE DEKWSELRDKMLQGSAQLLGLLVWRIQREEANLAKCELHQKLETAEKEIEELKKRRHE DAKANEKVVGIFASQEQGWLIERKKLRQQIGALINELRVLEKKKNEEIAGLSKKFNEM ELLVESKDKVIEEMEQKGKELEEKVMKFESIAEELRETAQREAQEHCTELWKHKTAFI EIVSNQRQLEAEIGRAFRQVEATKLELDSVLEQKEESVLLAQKLSIEITKIRKDLEQK DKILSAMLRKSKLDTAEKQMLLKEVKVSKAKKKQAELETERWKAVSESRHERHSLKGM FAKQASAKLDVSSGVKEVSNSGKTRSQPIDLVFEYDYSDLRTDPEVFSPLPDCHSLEA NEELVVTADVKRLEGWVRAEAEKYATVIEKRHHLELDAFAEQMRLKDEKLEAFRWRLL SMELESKRLQSHVEGLNQDVSQLRQENMKLEALLLEREEELDSLKEQFASQLKPLSCQ KTSLLNLSLHEPALTHDSFWPKVKFIKKKSIEREQETKTSLLDRPQERHAEKEEVNPS YNDSKNIRLIVQSPDKEFEEGRDISNLGPTQKETNGSVEVDSADKSALPGQSLGKTKN TPWRMDLQALGVSYKIKRLKQQLLMVERLTGKQESGEDTEGDDNGMKGFLSLISLLNK QVSRYLSLQGKTDDLCKRMHDNDIDTSQGDCSTRKKNGDTKTLEHFLEETFQLQRYMV ATGQKLMEVQSKIASGFIGVELDKSATFDMKRFADNVRSLFQEVQRGLEVRIARIIGD LEGTLACEGMTHFRR" CDS join(27926478..27927666,27927899..27928809, 27929082..27929420) /locus_tag="TCM_015428" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ribonuclease P protein subunit P38-related isoform 2" /protein_id="EOY23577.1" /db_xref="Phytozome:POPTR_0012s02370.1" /db_xref="TAIR:AT5G53020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CV56" /translation="MDEKGISGSYLIISEEKSDSLYPMYFGVSCAFFALRLLTGPEKE DEKWSELRDKMLQGSAQLLGLLVWRIQREEANLAKCELHQKLETAEKEIEELKKRRHE DAKANEKVVGIFASQEQGWLIERKKLRQQIGALINELRVLEKKKNEEIAGLSKKFNEM ELLVESKDKVIEEMEQKGKELEEKVMKFESIAEELRETAQREAQEHCTELWKHKTAFI EIVSNQRQLEAEIGRAFRQVEATKLELDSVLEQKEESVLLAQKLSIEITKIRKDLEQK DKILSAMLRKSKLDTAEKQMLLKEVKVSKAKKKQAELETERWKAVSESRHERHSLKGM FAKQASAKLDVSSGVKEVSNSGKTRSQPIDLVFEYDYSDLRTDPEVFSPLPDCHSLEA NEELVTADVKRLEGWVRAEAEKYATVIEKRHHLELDAFAEQMRLKDEKLEAFRWRLLS MELESKRLQSHVEGLNQDVSQLRQENMKLEALLLEREEELDSLKEQFASQLKPLSCQK TSLLNLSLHEPALTHDSFWPKVKFIKKKSIEREQETKTSLLDRPQERHAEKEEVNPSY NDSKNIRLIVQSPDKEFEEGRDISNLGPTQKETNGSVEVDSADKSALPGQSLGKTKNT PWRMDLQALGVSYKIKRLKQQLLMVERLTGKQESGEDTEGDDNGMKGFLSLISLLNKQ VSRYLSLQGKTDDLCKRMHDNDIDTSQGDCSTRKKNGDTKTLEHFLEETFQLQRYMVA TGQKLMEVQSKIASGFIGVELDKSATFDMKRFADNVRSLFQEVQRGLEVRIARIIGDL EGTLACEGMTHFRR" CDS join(27926478..27927666,27927896..27928798, 27929082..27929086) /locus_tag="TCM_015428" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ribonuclease P protein subunit P38-related isoform 3" /protein_id="EOY23578.1" /db_xref="Phytozome:POPTR_0012s02370.1" /db_xref="TAIR:AT5G53020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CV56" /translation="MDEKGISGSYLIISEEKSDSLYPMYFGVSCAFFALRLLTGPEKE DEKWSELRDKMLQGSAQLLGLLVWRIQREEANLAKCELHQKLETAEKEIEELKKRRHE DAKANEKVVGIFASQEQGWLIERKKLRQQIGALINELRVLEKKKNEEIAGLSKKFNEM ELLVESKDKVIEEMEQKGKELEEKVMKFESIAEELRETAQREAQEHCTELWKHKTAFI EIVSNQRQLEAEIGRAFRQVEATKLELDSVLEQKEESVLLAQKLSIEITKIRKDLEQK DKILSAMLRKSKLDTAEKQMLLKEVKVSKAKKKQAELETERWKAVSESRHERHSLKGM FAKQASAKLDVSSGVKEVSNSGKTRSQPIDLVFEYDYSDLRTDPEVFSPLPDCHSLEA NEELVVTADVKRLEGWVRAEAEKYATVIEKRHHLELDAFAEQMRLKDEKLEAFRWRLL SMELESKRLQSHVEGLNQDVSQLRQENMKLEALLLEREEELDSLKEQFASQLKPLSCQ KTSLLNLSLHEPALTHDSFWPKVKFIKKKSIEREQETKTSLLDRPQERHAEKEEVNPS YNDSKNIRLIVQSPDKEFEEGRDISNLGPTQKETNGSVEVDSADKSALPGQSLGKTKN TPWRMDLQALGVSYKIKRLKQQLLMVERLTGKQESGEDTEGDDNGMKGFLSLISLLNK QVSRYLSLQGKTDDLS" mobile_element complement(27930391..27930443) /note="source:CACAO_Helitron_S_E13_scaffold_2 108 160" /mobile_element_type="transposon:Helitron" mobile_element complement(27930973..27931559) /note="source:CACAO_Helitron_E81_scaffold_3 2558 3100" /mobile_element_type="transposon:Helitron" mobile_element complement(27934426..27934620) /note="source:scaffold_4_CACTA_0503 6785 6986" /mobile_element_type="transposon:TIR/CACTA" gene 27936650..27938694 /locus_tag="TCM_015429" /note="dbxref CacaoGD:Thecc1EG015429" mRNA join(27936650..27937508,27938255..27938694) /locus_tag="TCM_015429" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene12897" /inference="similar to AA sequence:Phytozome:POPTR_0015s01420.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12421t00001" CDS join(27936924..27937508,27938255..27938359) /locus_tag="TCM_015429" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23579.1" /db_xref="Phytozome:POPTR_0015s01420.1" /db_xref="TAIR:AT4G27810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDP7" /translation="MGSEAECETTSTPKLSLYSFPSKAKEPSGMKTPPIHTSVSIPFQ WEEAPGKPRPCPRTDTTSTQSKPKSARCLELPPRLLAEAKVANMPSPTTVLDGPNAGR FVSYTLSFRKGGSFRIPDNNKRLNKEKVIFGSSRWGSFRKAGRIVQGSFDFSSTPVVD GGGGGSSGGGTQVNITRVRRKGSLLSLAQARSHVLASIYESFKQVVPWRRGAGENKEK GVVNALPPSDV" gene complement(27938406..27940434) /locus_tag="TCM_015430" /note="dbxref CacaoGD:Thecc1EG015430" mRNA complement(join(27938406..27939005,27939701..27940223, 27940319..27940434)) /locus_tag="TCM_015430" /product="RWP-RK domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g41320.1" /inference="similar to AA sequence:ricco:30024.m001687" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2823t1" CDS complement(join(27938847..27939005,27939701..27940223, 27940319..27940404)) /locus_tag="TCM_015430" /note="dbxref ricco:30024.m001687" /codon_start=1 /product="RWP-RK domain-containing protein, putative" /protein_id="EOY23580.1" /db_xref="TAIR:AT5G53040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RSD2" /translation="MDSTNLNFPKLVNAPDFDWFNFEENPFGTALELLPFVVDGFYDF NDYNFNSLAPPGRINYVEFKDFEDISGDFALFENTSTLPSLHEDILVDAKPLKAMVGP LGQYCGNITNIGGSSETLTVIQSDYGASSGHGEQRRISGRKRTAPLELDEIQKYFDFP ISKAAKEMNVGLTVLKKRCRELNIMRWPHRKIKSLTALINNVKELGLTNEIMMLEDHK RLLEKLPDMELTERTKKLRQACFKANYKKRRSLAACY" gene 27943991..27948177 /locus_tag="TCM_015431" /note="dbxref CacaoGD:Thecc1EG015431" mRNA join(27943991..27944043,27944960..27945093, 27945691..27945773,27945888..27946038,27946457..27946556, 27946663..27946755,27946847..27946913,27947009..27947106, 27947248..27947366,27947609..27948177) /locus_tag="TCM_015431" /product="ABL interactor-like protein 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016509t1" /inference="similar to AA sequence:ricco:30024.m001685" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06587t00001; inference alignment:Newbler:10:TSA:cgbaP2_g06587t00001" mRNA join(27944055..27944316,27944960..27945093, 27945691..27945773,27945888..27946038,27946457..27946556, 27946663..27946755,27946847..27946913,27947009..27947106, 27947248..27947366,27947609..27948177) /locus_tag="TCM_015431" /product="ABL interactor-like protein 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016509t1" /inference="similar to AA sequence:ricco:30024.m001685" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b014907t1a2; alternateUTRof:Thecc1EG015431t1; inference alignment:Newbler:10:TSA:cgbaP2_g06587t00001" CDS join(27944998..27945093,27945691..27945773, 27945888..27946038,27946457..27946556,27946663..27946755, 27946847..27946913,27947009..27947106,27947248..27947366, 27947609..27947779) /locus_tag="TCM_015431" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30024.m001685; paralog of Thecc1EG016509t1" /codon_start=1 /product="ABL interactor-like protein 2 isoform 1" /protein_id="EOY23581.1" /db_xref="TAIR:AT3G49290.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1X4" /translation="MATAAAMPMSREASNYDEVSMHQSLLFADSLKDLKNLRTQLYSA AEYFELSYTNDDQKHIVVETLKDYAIKALVNTVDHLGSVTYKVNDLLDEKVDEVCGTE LRVSCIEQRLRTCQEYIDHEGISQQSLVINTPKYHKRYILPVGKTMHGANRTKSKYLG CSLDDEDDWHQLRNAVRATIRETPTSSVRETPTSSVRKGRSPSPSPQPPGPPQRSATF SFTATMPKKELEKRTVSPHRFPLLRSGSVSRPTTPNKSRPTTPNSAGARRRYPSEPRK SASMRLQSEKDSPKDIEQYPSKSKRLLKALLSRRKSKKDEMLYTYLDEY" CDS join(27944998..27945093,27945691..27945773, 27945888..27946038,27946457..27946556,27946663..27946755, 27946847..27946913,27947009..27947106,27947248..27947366, 27947609..27947779) /locus_tag="TCM_015431" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30024.m001685; paralog of Thecc1EG016509t1" /codon_start=1 /product="ABL interactor-like protein 2 isoform 1" /protein_id="EOY23582.1" /db_xref="TAIR:AT3G49290.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1X4" /translation="MATAAAMPMSREASNYDEVSMHQSLLFADSLKDLKNLRTQLYSA AEYFELSYTNDDQKHIVVETLKDYAIKALVNTVDHLGSVTYKVNDLLDEKVDEVCGTE LRVSCIEQRLRTCQEYIDHEGISQQSLVINTPKYHKRYILPVGKTMHGANRTKSKYLG CSLDDEDDWHQLRNAVRATIRETPTSSVRETPTSSVRKGRSPSPSPQPPGPPQRSATF SFTATMPKKELEKRTVSPHRFPLLRSGSVSRPTTPNKSRPTTPNSAGARRRYPSEPRK SASMRLQSEKDSPKDIEQYPSKSKRLLKALLSRRKSKKDEMLYTYLDEY" mobile_element 27948614..27948656 /note="source:scaffold_6_CACTA_0714 13415 13457" /mobile_element_type="transposon:TIR/CACTA" gene complement(27948642..27952197) /locus_tag="TCM_015432" /note="dbxref CacaoGD:Thecc1EG015432" mRNA complement(join(27948642..27949025,27949715..27949770, 27949879..27949951,27950180..27950377,27951825..27952197)) /locus_tag="TCM_015432" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g17990.1" /inference="similar to AA sequence:frave:gene12839" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9390t2" CDS complement(join(27948911..27949025,27949715..27949770, 27949879..27949951,27950180..27950232)) /locus_tag="TCM_015432" /note="dbxref frave:gene12839" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23583.1" /db_xref="TAIR:AT5G53045.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDP4" /translation="MAAVSELSDTPNQWEFSCDLEVDLESEENASIVYAALVVDKELQ PDKVKRQMSISDGKLSVHFEAVEARFLRASFSAFVDVLILATKTIEELGPGMEL" mobile_element 27950776..27950939 /note="source:scaffold_8_CACTA_0858 14129 14296" /mobile_element_type="transposon:TIR/CACTA" gene 27951439..27952410 /locus_tag="TCM_015433" /note="dbxref CacaoGD:Thecc1EG015433" mRNA join(27951439..27951585,27952215..27952373) /locus_tag="TCM_015433" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1731t9_C1" mRNA join(27951476..27951585,27952215..27952410) /locus_tag="TCM_015433" /product="Uncharacterized protein isoform 1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1731t15_C1; alternateUTRof:Thecc1EG015433t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1731t9_C1" CDS join(27951476..27951585,27952215..27952278) /locus_tag="TCM_015433" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23584.1" /translation="MNLYFSLPLGLSSPMLGFETGNLGWHQYFSDLEHTSSIYIVSRG RASSTNLAFSSTE" CDS join(27951476..27951585,27952215..27952278) /locus_tag="TCM_015433" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23585.1" /translation="MNLYFSLPLGLSSPMLGFETGNLGWHQYFSDLEHTSSIYIVSRG RASSTNLAFSSTE" gene complement(27952380..27958014) /locus_tag="TCM_015434" /note="dbxref CacaoGD:Thecc1EG015434" mRNA complement(join(27952380..27952412,27952504..27952681, 27952945..27953032,27953416..27953533,27954222..27954370, 27954981..27955034,27955345..27955440,27955959..27956059, 27956238..27956320,27956653..27956851,27956946..27957308, 27957881..27958014)) /locus_tag="TCM_015434" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01380.1" /inference="similar to AA sequence:ricco:29700.m000762" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06477t00001" CDS complement(join(27952518..27952681,27952945..27953032, 27953416..27953533,27954222..27954370,27954981..27955034, 27955345..27955440,27955959..27956059,27956238..27956320, 27956653..27956851,27956946..27957063)) /locus_tag="TCM_015434" /note="dbxref ricco:29700.m000762" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY23586.1" /db_xref="TAIR:AT5G53050.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1X6" /translation="MPFCEVGKTQSSVDAALNNGIQIFYRTYGHGPTKVLLIIGLAGT HDSWGPQIKGLTGTDRPNGDEMMAVDQEPGDGHNEVGGIEVCAFDNRGMGRSSVPTKK SDYTTRIMAKDAIALLDHLGWKKAHVFGHSMGAMIACKMAAMVPDRILSLALLNVTGG GFECFPKFDRKTLSIAIRFIKAKTPEQRAAVDLDTHYSKEYLEEYVGSNTRRAILYQE YVKGITATGMQSNCGFDGQINACWTHKMTRSEIELIHSCEFLVSVIHGRQDVIAQISH ARRLAEKLQPVARMVELHGGHLVSHERTEEVNKALLDLINASEMKMSPHDWNNFPKKT SEASSGTFMEGATNIILGKIHFYLLYIFSLFMIAIKHGRSALQRLKPARVGASLT" gene complement(27957689..27959533) /locus_tag="TCM_015435" /note="dbxref CacaoGD:Thecc1EG015435" mRNA complement(join(27957689..27958213,27958355..27958490, 27958602..27958685,27958775..27959070,27959383..27959533)) /locus_tag="TCM_015435" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2863t1" CDS complement(join(27957941..27958213,27958355..27958490, 27958602..27958685,27958775..27958824)) /locus_tag="TCM_015435" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23587.1" /translation="MAAAEARAAREHTANPCLAASGPGQATPLSMPDNQNLAPLPDSQ CPQISKDHCSDESSHCIRDGVREVPQKVYAECVESDQAVKKEESNALVQAEKTEPSWH IIDKDELASMVTQKSVEHVENCDLPQPLTKDFRKGQLPSLELPGYCETLPSSLDWPIQ EVFSDLSNHHWGRSTSVKCR" mobile_element complement(27959957..27960025) /note="source:scaffold_5_CACTA_0580 4712 4776" /mobile_element_type="transposon:TIR/CACTA" gene 27961759..27967030 /locus_tag="TCM_015436" /note="dbxref CacaoGD:Thecc1EG015436" mRNA join(27961759..27962822,27964096..27964569, 27964845..27965093,27965276..27965530,27965762..27965841, 27966027..27966135,27966236..27966362,27966469..27967030) /locus_tag="TCM_015436" /product="RNA-binding KH domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01350.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s01350.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15136t00001" CDS join(27962109..27962822,27964096..27964569, 27964845..27965093,27965276..27965530,27965762..27965841, 27966027..27966135,27966236..27966362,27966469..27966488) /locus_tag="TCM_015436" /codon_start=1 /product="RNA-binding KH domain-containing protein" /protein_id="EOY23588.1" /db_xref="Phytozome:POPTR_0015s01350.1" /db_xref="TAIR:AT5G53060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVU6" /translation="MERSRSKRNYYYDQDYDGENMGRTKPRYNNHHYLPNSHRHRGNN PNNNNGNNGRPSNKGGSGGGGGQDSSLMVTTSYRILCHDMKAGGVIGKSGSIIKSIRQ HTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHERILESDSQF GFGSGGGEEEEDYGGVVRGGGNRVATRLVVSRMHVGCLLGKGGKIIEQMRIETKTQIR ILPRDHTLPRCVSMSEEIVQVVGDVNAVKNAIAIISSRLRESQHRDRSHFHGRMHSPE RFFPDDDYISHVNNASRRSSMDGSTFGSRMPAANYRGNNYSSRPSGFIEAGTAPVSDS GQPLYGDDLVFRILCPIEKVDSVFGEPDGIVDLLQNEIGVDVKVADPVTGSDEQIITI SSEEGPDDELFPAQEALLHIQTQIADLVPDKDNIITTRLIVPSSEIGCLEGRDGSLSE MKRLTGANILILSGEELPSCVSGPDEIVQIVGEIKAARDALVEVTSRLRSYLYREFSQ KDTPPAISATASLGNVSALEIASPNLTPVRDSQTVSDPPTGTYQNVLTVAMPPLSKEV VNSGAETMKQTESERREDIPSTISRIPVPLVTRSTLEVVIPEHAVPKLITKSKNKLAQ ISELSGANVTLVHDQPDDTQKIIQISGTPEQAERAQSLLQGFILSTQEDGP" gene 27967139..27971391 /locus_tag="TCM_015437" /note="dbxref CacaoGD:Thecc1EG015437" mRNA join(27967139..27967432,27967664..27967903, 27968180..27968453,27969150..27969300,27969427..27969649, 27969735..27969826,27970001..27970136,27970531..27970862, 27971038..27971391) /locus_tag="TCM_015437" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01320.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s01320.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7883t3" CDS join(27967386..27967432,27967664..27967903, 27968180..27968453,27969150..27969300,27969427..27969649, 27969735..27969826,27970001..27970136,27970531..27970862, 27971038..27971288) /locus_tag="TCM_015437" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY23589.1" /db_xref="Phytozome:POPTR_0015s01320.1" /db_xref="TAIR:AT5G53080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDN7" /translation="MAASILIPSPSFNTYRTSQVSLNLHSQHWHQSISRFSVSLKTHK SSLKLYMIPAIPIVARQFLLKPFAAVDSLEAHVSPDQNCAASGVSSQNGFDRSKTLLD KASNSLDGMSDFERQLQELFNEVKTLIMTGNRSDALDLLQANYEAVKEQINAGAKGIE EAAILDVIALGYMAVGELKFVHPLLNLINEVIEDQKDDEPLLDSILLHMGSMYSTLGE FEKSMLVNQRVTDILENRHGKNSVFLVTPLLGMTKVLSSTGRTTKAVDIYHRVIKILE LSRGTESEDFVVPLVGLGNLLIKEGRATDAENAFVRILNIYTKLYGENDGRVALAMCS LAHAKCAKGNANEAIDLYKKALQMIKDSSYMPSDDSLMENMRIDLAELLHAVGRGREG RELLEECLLITEKLKGKDHPSLVAHYLNLATSYSQSKDFVMAERLLRTSLEITKKAER PDNPSITFPMLHLAVTLYHLERDEEAEQVALEALHIREKAFGKDSLPVGEALDCLVSI QTRLGKGEVELLEQLKRILRIQEKELGYENEEVMITLKKVVFYLDKLGKKDEKFPLQK RLSRLWMKYKQVVRY" mRNA join(<27967404..27967432,27967664..27967903, 27968180..27968453,27969150..27969300,27969427..27969649, 27969735..27969826,27970001..27970136,27970531..27970862, 27971043..>27971066) /locus_tag="TCM_015437" /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01320.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s01320.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1046t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7883t3" CDS join(<27967404..27967432,27967664..27967903, 27968180..27968453,27969150..27969300,27969427..27969649, 27969735..27969826,27970001..27970136,27970531..27970862, 27971043..>27971065) /locus_tag="TCM_015437" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /protein_id="EOY23590.1" /db_xref="Phytozome:POPTR_0015s01320.1" /db_xref="TAIR:AT5G53080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDN7" /translation="IPSPSFNTYRTSQVSLNLHSQHWHQSISRFSVSLKTHKSSLKLY MIPAIPIVARQFLLKPFAAVDSLEAHVSPDQNCAASGVSSQNGFDRSKTLLDKASNSL DGMSDFERQLQELFNEVKTLIMTGNRSDALDLLQANYEAVKEQINAGAKGIEEAAILD VIALGYMAVGELKFVHPLLNLINEVIEDQKDDEPLLDSILLHMGSMYSTLGEFEKSML VNQRVTDILENRHGKNSVFLVTPLLGMTKVLSSTGRTTKAVDIYHRVIKILELSRGTE SEDFVVPLVGLGNLLIKEGRATDAENAFVRILNIYTKLYGENDGRVALAMCSLAHAKC AKGNANEAIDLYKKALQMIKDSSYMPSDDSLMENMRIDLAELLHAVGRGREGRELLEE CLLITEKLKGKDHPSLVAHYLNLATSYSQSKDFVMAERLLRTSLEITKKAERPDNPSI TFPMLHLAVTLYHLERDEEAEQVALEALHIREKAFGKDSLPVGFGLFGVN" gene 27971377..27974377 /locus_tag="TCM_015438" /note="dbxref CacaoGD:Thecc1EG015438" mRNA join(27971377..27971496,27971805..27972144, 27972241..27972291,27972382..27972447,27973651..27974287) /locus_tag="TCM_015438" /product="Plastid transcriptionally active7 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010322001" /inference="similar to AA sequence:Phytozome:GSVIVT01010322001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc40t5" mRNA join(27971794..27972144,27972241..27972291, 27973651..27974377) /locus_tag="TCM_015438" /product="Plastid transcriptionally active7 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010322001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023776t1" /inference="similar to AA sequence:Phytozome:GSVIVT01010322001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc41t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc40t5" CDS join(27972082..27972144,27972241..27972291, 27972382..27972447,27973651..27973986) /locus_tag="TCM_015438" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Plastid transcriptionally active7 isoform 1" /protein_id="EOY23591.1" /db_xref="Phytozome:GSVIVT01010322001" /db_xref="TAIR:AT5G24314.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KFT3" /translation="MAFAISNPTCISSSISPLLKTARAGTNSWRLNPNLKCQCRVVSR FESEGGGRRVWRRRKLTKKDEMLQYKLERIPFLEEQVRKIREGGKLLTMDIERLLLSE DNRFDFVNDVAAEAKDYIESNRDEYGGTKKAILHVLSNRVNDSGFYRPDAYAESDPFK PGPTYLKEEFT" CDS join(27972082..27972144,27972241..27972291, 27973651..27973986) /locus_tag="TCM_015438" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG023776t1" /codon_start=1 /product="Plastid transcriptionally active7 isoform 2" /protein_id="EOY23592.1" /db_xref="Phytozome:GSVIVT01010322001" /db_xref="TAIR:AT5G24314.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDN6" /translation="MAFAISNPTCISSSISPLLKTARAGTNSWRLNPNLKCQTKKDEM LQYKLERIPFLEEQVRKIREGGKLLTMDIERLLLSEDNRFDFVNDVAAEAKDYIESNR DEYGGTKKAILHVLSNRVNDSGFYRPDAYAESDPFKPGPTYLKEEFT" gene 27974536..27978262 /locus_tag="TCM_015439" /note="dbxref CacaoGD:Thecc1EG015439" mRNA join(27974536..27975112,27975205..27975354, 27975487..27975592,27975780..27975890,27976080..27976198, 27976275..27976328,27976532..27976648,27976771..27976825, 27976950..27976982,27977077..27977123,27977721..27978163) /locus_tag="TCM_015439" /product="Thylakoid-associated phosphatase 38 isoform 1" /inference="alignment:exonerate- protein:2:ricco:28823.m000015" /inference="similar to AA sequence:ricco:28823.m000015" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01215t00001" mRNA join(27974586..27975112,27975226..27975354, 27975487..27975592,27975780..27975890,27976080..27976159, 27976275..27976328,27976532..27976648,27976771..27976825, 27976950..27977122) /locus_tag="TCM_015439" /product="Thylakoid-associated phosphatase 38 isoform 5" /inference="alignment:exonerate- protein:2:ricco:28823.m000015" /inference="similar to AA sequence:ricco:28823.m000015" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1415t7; inference alignment:Newbler:10:TSA:cgbaL_g01215t00001" mRNA join(27974676..27975112,27975226..27975354, 27975487..27975592,27975780..27975890,27976080..27976159, 27976275..27976328,27976532..27976648,27976771..27976825, 27976950..27976982,27977077..27977123,27977725..27978086) /locus_tag="TCM_015439" /product="Thylakoid-associated phosphatase 38 isoform 2" /inference="alignment:exonerate- protein:2:ricco:28823.m000015" /inference="similar to AA sequence:ricco:28823.m000015" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01215t00002; inference alignment:Newbler:10:TSA:cgbaL_g01215t00001" mRNA join(27974681..27975112,27975226..27975354, 27975487..27975592,27975780..27975890,27976080..27976159, 27976275..27976328,27976532..27976648,27976768..27976825, 27976950..27976982,27977077..27977124,27977721..27978262) /locus_tag="TCM_015439" /product="Thylakoid-associated phosphatase 38 isoform 3" /inference="alignment:exonerate- protein:2:ricco:28823.m000015" /inference="similar to AA sequence:ricco:28823.m000015" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7891t2; inference alignment:Newbler:10:TSA:cgbaL_g01215t00001" mRNA join(27974681..27975112,27975226..27975354, 27975487..27975592,27975780..27975890,27976080..27976159, 27976275..27976328,27976532..27976648,27976771..27976825, 27976947..27976983,27977077..27977123,27977721..27978262) /locus_tag="TCM_015439" /product="Thylakoid-associated phosphatase 38 isoform 4" /inference="alignment:exonerate- protein:2:ricco:28823.m000015" /inference="similar to AA sequence:ricco:28823.m000015" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7891t3; inference alignment:Newbler:10:TSA:cgbaL_g01215t00001" CDS join(27974790..27975112,27975205..27975354, 27975487..27975592,27975780..27975890,27976080..27976198, 27976275..27976328,27976532..27976648,27976771..27976825, 27976950..27976982,27977077..27977123,27977721..27977844) /locus_tag="TCM_015439" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28823.m000015" /codon_start=1 /product="Thylakoid-associated phosphatase 38 isoform 1" /protein_id="EOY23593.1" /db_xref="TAIR:AT4G27800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E4MWP7" /translation="MALSSPQLQRFLSTDFNFTSNTKSANKNHLTTTTNIRARSPCRC SAIAIDAPSSLTDVAGIRWGSASVQGRREEMEDNLVIRSDGLDGFSFAAVFDGHGGVS SVEFLRDGSDESRDELYKECVTALQGGFLLNGGDFNAIRKALTKAFENADKKLLNWLE TIGEGDDESGSTATVMLIGNEVLFISHVGDSCVVLSRAGKVEVLTDSHRPYGSNETSL QEIRRIREAGGWIVNGRICGDIAVSRAFGDTRFKTKKNELCSSPVLILKNFSMLKKGV EERRWSEKFISRIVFNGDLVIASPDTFKVALGSGAEFILSASDGLWDYINSSDAVAFV RNQLREHGNVQVACDALAQAALDQGSEDNISIIIADLGQTDWQSLPLEQQNFLYELGQ ALATVGIVSLGIWLSSQASF" CDS join(27974790..27975112,27975226..27975354, 27975487..27975592,27975780..27975890,27976080..27976159, 27976275..27976328,27976532..27976648,27976771..27976825, 27976950..27976982,27977077..27977123,27977725..27977776) /locus_tag="TCM_015439" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28823.m000015" /codon_start=1 /product="Thylakoid-associated phosphatase 38 isoform 2" /protein_id="EOY23594.1" /db_xref="TAIR:AT4G27800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E4MWP7" /translation="MALSSPQLQRFLSTDFNFTSNTKSANKNHLTTTTNIRARSPCRC SAIAIDAPSSLTDVAGIRWGSASVQGRREEMEDNLVIRSDGLDGFSFAAVFDGHGGVS SVEFLRDELYKECVTALQGGFLLNGGDFNAIRKALTKAFENADKKLLNWLETIGEGDD ESGSTATVMLIGNEVLFISHVGDSCVVLSRAGKVEVLTDSHRPYGSNETSLQEIRRIR EAGGWIVNGRICGDIAVSRAFGDTRFKTKKNEMLKKGVEERRWSEKFISRIVFNGDLV IASPDTFKVALGSGAEFILSASDGLWDYINSSDAVAFVRNQLREHGNVQVACDALAQA ALDQGSEDNISIIIADLGPTGRACHLSNKIFYMS" CDS join(27974790..27975112,27975226..27975354, 27975487..27975592,27975780..27975890,27976080..27976159, 27976275..27976328,27976532..27976648,27976768..27976825, 27976950..27976982,27977077..27977124,27977721..27977750) /locus_tag="TCM_015439" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28823.m000015" /codon_start=1 /product="Thylakoid-associated phosphatase 38 isoform 3" /protein_id="EOY23595.1" /db_xref="TAIR:AT4G27800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E4MWP7" /translation="MALSSPQLQRFLSTDFNFTSNTKSANKNHLTTTTNIRARSPCRC SAIAIDAPSSLTDVAGIRWGSASVQGRREEMEDNLVIRSDGLDGFSFAAVFDGHGGVS SVEFLRDELYKECVTALQGGFLLNGGDFNAIRKALTKAFENADKKLLNWLETIGEGDD ESGSTATVMLIGNEVLFISHVGDSCVVLSRAGKVEVLTDSHRPYGSNETSLQEIRRIR EAGGWIVNGRICGDIAVSRAFGDTRFKTKKNEMLKKGVEERRWSEKFISRIVFNGDLV IASPDTFKVALGSGAEFILSASDGLWDYINSSSDAVAFVRNQLREHGNVQVACDALAQ AALDQGSEDNISIIIADLGADRLAELAT" CDS join(27974790..27975112,27975226..27975354, 27975487..27975592,27975780..27975890,27976080..27976159, 27976275..27976328,27976532..27976648,27976771..27976825, 27976947..27976983,27977077..27977090) /locus_tag="TCM_015439" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:28823.m000015" /codon_start=1 /product="Thylakoid-associated phosphatase 38 isoform 4" /protein_id="EOY23596.1" /db_xref="TAIR:AT4G27800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E4MWP7" /translation="MALSSPQLQRFLSTDFNFTSNTKSANKNHLTTTTNIRARSPCRC SAIAIDAPSSLTDVAGIRWGSASVQGRREEMEDNLVIRSDGLDGFSFAAVFDGHGGVS SVEFLRDELYKECVTALQGGFLLNGGDFNAIRKALTKAFENADKKLLNWLETIGEGDD ESGSTATVMLIGNEVLFISHVGDSCVVLSRAGKVEVLTDSHRPYGSNETSLQEIRRIR EAGGWIVNGRICGDIAVSRAFGDTRFKTKKNEMLKKGVEERRWSEKFISRIVFNGDLV IASPDTFKVALGSGAEFILSASDGLWDYINSSDAVAFVRNQLREHGNVQQVACDALAQ AALGSRL" CDS join(27974790..27975112,27975226..27975354, 27975487..27975592,27975780..27975890,27976080..27976159, 27976275..27976328,27976532..27976648,27976771..27976825, 27976950..27977069) /locus_tag="TCM_015439" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:28823.m000015" /codon_start=1 /product="Thylakoid-associated phosphatase 38 isoform 5" /protein_id="EOY23597.1" /db_xref="TAIR:AT4G27800.2" /db_xref="UniProtKB/TrEMBL:UniRef50_E4MWP7" /translation="MALSSPQLQRFLSTDFNFTSNTKSANKNHLTTTTNIRARSPCRC SAIAIDAPSSLTDVAGIRWGSASVQGRREEMEDNLVIRSDGLDGFSFAAVFDGHGGVS SVEFLRDELYKECVTALQGGFLLNGGDFNAIRKALTKAFENADKKLLNWLETIGEGDD ESGSTATVMLIGNEVLFISHVGDSCVVLSRAGKVEVLTDSHRPYGSNETSLQEIRRIR EAGGWIVNGRICGDIAVSRAFGDTRFKTKKNEMLKKGVEERRWSEKFISRIVFNGDLV IASPDTFKVALGSGAEFILSASDGLWDYINSSDAVAFVRNQLREHGNVQVACDALAQA ALVINSNLFLLIHITYICLYASSSNVRILS" gene complement(27979156..27980014) /locus_tag="TCM_015440" /note="dbxref CacaoGD:Thecc1EG015440" mRNA complement(join(27979156..27979575,27979731..27979783, 27979896..27980014)) /locus_tag="TCM_015440" /product="Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase, putative" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16516t00001" CDS complement(join(27979459..27979575,27979731..27979783, 27979896..27979956)) /locus_tag="TCM_015440" /codon_start=1 /product="Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase, putative" /protein_id="EOY23598.1" /translation="MALCFKAFLLLSLLLMPFSCGTVAAFQDGMQAKYSLHLGGIQTN PSRKLLMLGAMLDYDDTGANTKHDPRKKPGKP" mobile_element complement(27980173..27980185) /note="source:INTACT296_F13_scaffold_9-int 13228 13254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27980186..27980263 /note="source:scaffold_6_CACTA_0712 1417 1494" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27980264..27980284) /note="source:INTACT296_F13_scaffold_9-int 13178 13227" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27983093..27988916) /locus_tag="TCM_015442" /note="dbxref CacaoGD:Thecc1EG015442" mRNA complement(join(27983093..27984171,27984277..27986688, 27987262..27987438,27988848..27988916)) /locus_tag="TCM_015442" /product="ARM repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038575001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015443t1" /inference="similar to AA sequence:ricco:29753.m000255" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7965t1" CDS complement(join(27983973..27984171,27984277..27986684)) /locus_tag="TCM_015442" /note="dbxref ricco:29753.m000255; paralog of Thecc1EG015443t1" /codon_start=1 /product="ARM repeat superfamily protein" /protein_id="EOY23599.1" /db_xref="TAIR:AT5G53480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJD4" /translation="MEVTQVLLNAQSIDGAVRKTAEESLKQFQEQNLPGFLLSLSVEL ANEEKPVETRKLAGLILKNALDAKEQHRKFELVQRWLSLDTNAKSQIKACLLKTLSSP VSDARSTASQVIAKVAGIELPQKQWPELISLLLSNVHQLPAHAKQATLETLGYMCEEV SPDVIDQDQVNKILTAVVQGMSASEGNTDVRLAATRALYNALGFAQANFSNDMERDYI MRVVCEATLSPEVRIRQAAFECLVSISSTYYEKLAPYIQDIFNITAKAVREDEEPVSL QAIEFWSSICDEEIDILEEYGSDFTGDSDIPCFYFIKQALPALVPMLLETLLKQEEDQ DQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVVPFIEENITKPDWRQREAATYAFGSI LEGPSPEKLLSLVNVALTFMLSALTKDPNSHVKDTTAWALGRIFEFLHGSAVDSPIIT QANCQQIVTVLLQSMKDTPNVAEKACGALYFLAQGYEEVGPSSPLTPFFQEIVQSLLT VTHREDAGESRLRTAAYETLNEVVRCSTDETASLVLQLVPVIMMELHNTLEGQKLSSD EREKQSELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEE AMLAIGALAYATGPDFAKYMPEFYRYLEMGLQNFEEYQVCAVTVGVVGDISRAIEEKI VPYCDGIMTQLLKNLSSNQLHRSVKPPIFSCFGDIALAVGEYFEKYLMWAMSALQSAA ELSTHTAGDDELTEYTNSLRNGILEAYSGVFQGFKNSPKTQLLIPYASHILQFLDSIY IEKDMDDVVMKTAIGVLGDLADTLGSHAGSLIQQSPSSKDFLNECLSSEDLMIKESAE WAKLAISRAISV" gene complement(27988966..27993422) /locus_tag="TCM_015443" /note="dbxref CacaoGD:Thecc1EG015443" mRNA complement(join(27988966..27990147,27990259..27992679, 27992951..27993059,27993282..27993422)) /locus_tag="TCM_015443" /product="ARM repeat superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29753.m000255" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015442t1" /inference="similar to AA sequence:ricco:29753.m000255" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc148t13" mobile_element 27989761..27989789 /note="source:CACAO_M_E22318_F12_scaffold_3 4114 4142" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(27989949..27990147,27990259..27992679, 27992951..27993009)) /locus_tag="TCM_015443" /note="dbxref ricco:29753.m000255; paralog of Thecc1EG015442t1" /codon_start=1 /product="ARM repeat superfamily protein" /protein_id="EOY23600.1" /db_xref="TAIR:AT5G53480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJD4" /translation="MSNCYVDPKYLSVPYQLLSMNIRAMEVTQVLLNAQSIDGAVRKN AEESLKQFQEQNLPAFLLSLSGELANEEKPVETRKLAGLILKNALDAKEQHRKYELVQ RWLSLDANAKSQIKACVLKTLSSAVADARSTASQVIAKVAGIELPQKQWPELIGSLLS NIHQLRAHAKQATLETLGYLCEEVSPDIIDQDQVNKILTAVVQGMSASEGNTDVRLAA TRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVRIRQAAFECLVSISSTYYEKL APYIQDIFSITAKAVREDEEPVSLQAIEFWSSICDEEIDILEDYGGEFTGDSDIPCFY FIKQALPALVPMLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVVP FIEENITKPDWRQREAATYAFGSILEGPSPEKLIPLVNVALNFMLSALTKDPNSHVKD TTAWTVGRIFEFLHGSAVDSPIITQANCQQIVTVLLQSMKDTPNVAEKACGALYFLAQ GYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPL VLQLVPVIMMELHNTLEGQKLSSDEREKQSELQGLLCGCLQVIIQKLGSSEPTKYVFM QYADQIMGLFLRVFACRSSTVHEEAMLAIGALAYATGPDFAKYMPDFYRYLEMGLQNF EEYQVCAVTVGVVGDISRALEEKIVPYCDGIMTQLLKNLSSNQLHRSVKPPIFSCFGD IALAVGEYFEKYLMWAMSALQRAAELSTHTAGDDELTEYTNSLRNGILEAYSGIFQGF KNSPKTQLLIPYAPHILQFLDGIYMEKDMDDVVMKTAIGVLGDLADTLGSHAGSLIQQ SRSSKDFLNECLSSEDHMIKESAEWAKLAISRAISV" gene complement(27994662..27996633) /locus_tag="TCM_015444" /note="dbxref CacaoGD:Thecc1EG015444" mRNA complement(join(27994662..27995069,27995154..27995250, 27995333..27995488,27995569..27995634,27995760..27995862, 27996016..27996633)) /locus_tag="TCM_015444" /product="Calcium-binding EF hand family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01260.1" /inference="similar to AA sequence:ricco:29753.m000253" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3585t2" mRNA complement(join(27994694..27995069,27995154..27995250, 27995333..27995488,27995760..27995862,27996016..27996597)) /locus_tag="TCM_015444" /product="Calcium-binding EF hand family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01260.1" /inference="similar to AA sequence:frave:gene12829" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3587t1_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3585t2" CDS complement(join(27994941..27995069,27995154..27995250, 27995333..27995488,27995760..27995862,27996016..27996499)) /locus_tag="TCM_015444" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene12829" /codon_start=1 /product="Calcium-binding EF hand family protein, putative isoform 2" /protein_id="EOY23602.1" /db_xref="TAIR:AT4G27790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDN2" /translation="MAKAVVYTFLATAFIILFVFFQNKRHGHHTRSGLSRRLGYKAPH FDPLVARLERSAEEKGLSYHVDPEHISYVPEVADADEFFGDDGTLNTTLRLMILFPLL DSAPKDGLISAKELGAWIGQQAMDRLSFRTNKVMSWHDKNGDGAISFSEYLPHFNEND IAKNRKEHGEAGWWMEQFNNADLNSNGTLDFNEFKERMDDDHDGKLNFKEFLDYAYNI YKSYAEFETAAALAPTAEEKFVELDINEDKYLELDELRPILRYLYPGELFYAKYYTSY LIYEADDNKDGNLTMEEILNHESIFYNSLYDDSIDDDDYDDDHDEL" CDS complement(join(27994941..27995069,27995154..27995250, 27995333..27995488,27995569..27995634,27995760..27995862, 27996016..27996499)) /locus_tag="TCM_015444" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29753.m000253" /codon_start=1 /product="Calcium-binding EF hand family protein, putative isoform 1" /protein_id="EOY23601.1" /db_xref="TAIR:AT4G27790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDN2" /translation="MAKAVVYTFLATAFIILFVFFQNKRHGHHTRSGLSRRLGYKAPH FDPLVARLERSAEEKGLSYHVDPEHISYVPEVADADEFFGDDGTLNTTLRLMILFPLL DSAPKDGLISAKELGAWIGQQAMDRLSFRTNKVMSWHDKNGDGAISFSEYLPHFNEND IAKNRKEHGEAGWWMEQFNNADLNSNGTLDFNEFKDFLHPEDSDNEEIQKWLLREKMK RMDDDHDGKLNFKEFLDYAYNIYKSYAEFETAAALAPTAEEKFVELDINEDKYLELDE LRPILRYLYPGELFYAKYYTSYLIYEADDNKDGNLTMEEILNHESIFYNSLYDDSIDD DDYDDDHDEL" gene 27996888..27999712 /locus_tag="TCM_015445" /note="dbxref CacaoGD:Thecc1EG015445" mRNA join(27996888..27996988,27997106..27997286, 27997350..27997402,27997495..27997680,27997799..27997844, 27998126..27998228,27998304..27998400,27998472..27998536, 27998708..27998773,27999259..27999317,27999465..27999712) /locus_tag="TCM_015445" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS join(27996938..27996988,27997106..27997286, 27997350..27997402,27997495..27997680,27997799..27997844, 27998126..27998228,27998304..27998400,27998472..27998536, 27998708..27998773,27999259..27999317,27999465..27999679) /locus_tag="TCM_015445" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23603.1" /translation="MSFIGPRHHERQVPMSEEASEQRRKKKIVELLHLAHYCKLKRRP PSSGTVIGTDLGATYSCVGVYRNGHVEITANDQGEAANNQEAVNPERTVFDRGSEGKL VACKIVNKDGKPCIQVKIKDEETKVFSPEEISAMFLTNMKETAESFLGKKMKDAVQLT SMTHKGKLQNDSGEDFHRRIMEYFIKLIKKKKEWKGQQSFRKVKERIFLKPLPQARFE ELYNDLFRKPWDLSRKPWRTLLLKEFFDGNEPNKGVNPDEAVAYTSTGCGTADLGNET VGGVMTRAKDMASGRRSEKITIANDKDRLAESEEEEKIDSAIKDALEWLDDKQNAEEE DFAEKLKEGGLSRVERQGKGRGLLPCMLPISHVQFWVGK" gene complement(28000026..28003796) /locus_tag="TCM_015446" /note="dbxref CacaoGD:Thecc1EG015446" mRNA complement(join(28000026..28000767,28001068..28001165, 28001278..28001369,28002243..28002346,28002463..28002568, 28003058..28003796)) /locus_tag="TCM_015446" /product="Acyl-CoA binding protein 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01250.1" /inference="similar to AA sequence:ricco:29753.m000252" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9406t3" mRNA complement(join(28000473..28000767,28001068..28001165, 28001278..28001369,28002243..28002343,28002463..28002568, 28003058..28003433,28003524..28003765)) /locus_tag="TCM_015446" /product="Acyl-CoA binding protein 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01250.1" /inference="similar to AA sequence:ricco:29753.m000252" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc661t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9406t3" mRNA complement(join(28000474..28001165,28001278..28001369, 28002243..28002343,28002463..28002568,28003058..28003765)) /locus_tag="TCM_015446" /product="Acyl-CoA binding protein 2 isoform 3" /inference="similar to AA sequence:ricco:29753.m000252" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc683t8" CDS complement(join(28000591..28000767,28001068..28001165, 28001278..28001369,28002243..28002343,28002463..28002568, 28003058..28003433,28003524..28003563)) /locus_tag="TCM_015446" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29753.m000252" /codon_start=1 /product="Acyl-CoA binding protein 2 isoform 2" /protein_id="EOY23605.1" /db_xref="TAIR:AT4G27780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STP8" /translation="MADWQQLLQSILIAHVQAHNKLDSGSESDPHVRTDFGGPHDADS VIAEVGSVRNESDGGDDDGDDDDDDDDWEGVECTELDEAFSAATAFVAAAAADRLSQK VSSEMQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEEAMQKYIDI VTELYPTWAAGSAMSKGGAENAASRDARGPMGPVFSSFVYEEESGNELKMDAIHAFAR EGELDNLLKCIESDVSVNLRDSEGRTPLHWAVDRGHFKITEALVSRNADVNAKDNEGQ TPLHYAVVCEREDIAEFLVKQNADKDMEDDDGNSPVDLCALDWPWLQCAGKAD" CDS complement(join(28000591..28000767,28001068..28001165, 28001278..28001369,28002243..28002346,28002463..28002568, 28003058..28003563)) /locus_tag="TCM_015446" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29753.m000252" /codon_start=1 /product="Acyl-CoA binding protein 2 isoform 1" /protein_id="EOY23604.1" /db_xref="TAIR:AT4G27780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STP8" /translation="MADWQQLLQSILIGLLFSYLLAKLISLVVSFKEDNLSIARARTA HVQAHNKLDSGSESDPHVRTDFGGPHDADSVIAEVGSVRNESDGGDDDGDDDDDDDDW EGVECTELDEAFSAATAFVAAAAADRLSQKVSSEMQLQLYGLYKIATEGPCTAPQPSA LKMTARAKWQAWHKLGAMPPEEAMQKYIDIVTELYPTWAAGSAMKSKGGAENAASRDA RGPMGPVFSSFVYEEESGNELKMDAIHAFAREGELDNLLKCIESDVSVNLRDSEGRTP LHWAVDRGHFKITEALVSRNADVNAKDNEGQTPLHYAVVCEREDIAEFLVKQNADKDM EDDDGNSPVDLCALDWPWLQCAGKAD" CDS complement(join(28000918..28001165,28001278..28001369, 28002243..28002343,28002463..28002568,28003058..28003563)) /locus_tag="TCM_015446" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29753.m000252" /codon_start=1 /product="Acyl-CoA binding protein 2 isoform 3" /protein_id="EOY23606.1" /db_xref="TAIR:AT4G27780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STP8" /translation="MADWQQLLQSILIGLLFSYLLAKLISLVVSFKEDNLSIARARTA HVQAHNKLDSGSESDPHVRTDFGGPHDADSVIAEVGSVRNESDGGDDDGDDDDDDDDW EGVECTELDEAFSAATAFVAAAAADRLSQKVSSEMQLQLYGLYKIATEGPCTAPQPSA LKMTARAKWQAWHKLGAMPPEEAMQKYIDIVTELYPTWAAGSAMSKGGAENAASRDAR GPMGPVFSSFVYEEESGNELKMDAIHAFAREGELDNLLKCIESDVSVNLRDSEGRTPL HWAVDRGHFKITEALVSRNADVNAKVVIVVGVTINWFLLPDIFLLAETTHSFLDGSVM HDKNYEILSLQCFMFQ" mobile_element 28003260..28003306 /note="source:CACAO_M_S_E146340_F96_scaffold_12 8562 8610" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28004548..28005357 /locus_tag="TCM_015447" /note="dbxref CacaoGD:Thecc1EG015447" mRNA join(28004548..28004753,28004931..28005357) /locus_tag="TCM_015447" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage" CDS join(28004641..28004753,28004931..28005087) /locus_tag="TCM_015447" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23607.1" /translation="MKRLTTTGIYLKILKQNHLMLSMNIVMLCVSVGMQFATKIGGGE RGHVLGCMVGEEVAVWNLYEKIISADVFWFCKQLAVGRGKGEKSE" gene complement(28004792..28007761) /locus_tag="TCM_015448" /note="dbxref CacaoGD:Thecc1EG015448" mRNA complement(join(28004792..28005699,28005863..28006178, 28006351..28007327,28007419..28007761)) /locus_tag="TCM_015448" /product="O-Glycosyl hydrolases family 17 protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038583001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041833t1" /inference="similar to AA sequence:ricco:29753.m000250" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2716t3" CDS complement(join(28005677..28005699,28005863..28006178, 28006351..28007327,28007419..28007551)) /locus_tag="TCM_015448" /note="dbxref ricco:29753.m000250; paralog of Thecc1EG041833t1" /codon_start=1 /product="O-Glycosyl hydrolases family 17 protein" /protein_id="EOY23608.1" /db_xref="TAIR:AT5G24318.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMH9" /translation="MVCPQCIIQHLPIPTKAMAKEFISVFSSVLVAAILFFLASTPVR GVEGTIGINYGTVANNLPPPAQVAHFLLESTVINRVRLFDANPDILKAFAHTGIAITV TVPNDQIPRLTKLNLAQQWVEDNIQPYTPATNIVRILVGNEVISTANKLLIGSLVPAV QTLHTALVEASLDRRIQVSTPHSLGILSNSSPPSTGKFRQGYDTHVLKPLLSFLRATN SPFMVNPYPFFGCSPDTLDYALFRPNAGVFDENTELHYTNMLDAQLDAVFSAMKFVGF DDLEIVIAETGWPSMGDSTQVGVDAESAAEYNGNLMRHVASGAGTPLMPNRTFETYIF ALFNENLKPGPTCERNFGLFQPDMTPVYDVGILRPTARSSIPNNPTPVPTAAPVNPTP RSEGKQWCLPKTGADENALQRNIDYVCGLGLDCGPIQEDGACFLPNTVRAHAAFAMNA YYQSTDRKEYDCAFEQTGAITDVDPSYGKCQY" mobile_element complement(28011890..28011969) /note="source:scaffold_1_CACTA_0032 2770 2849" /mobile_element_type="transposon:TIR/CACTA" gene 28012238..28013288 /locus_tag="TCM_015449" /note="dbxref CacaoGD:Thecc1EG015449" mRNA 28012238..28013288 /locus_tag="TCM_015449" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS 28012752..28013030 /locus_tag="TCM_015449" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23609.1" /translation="MLPFALCVMLNLRPLLTFSSLAQLLGTFGCTIVAFGGLVGFTRV MPLASLFLGKTINHLMVLLKYDTCSSSLPYGQYGFVETKPFSKVNNLM" gene complement(28013329..28017076) /locus_tag="TCM_015450" /note="dbxref CacaoGD:Thecc1EG015450" mRNA complement(join(28013329..28014146,28014951..28015040, 28015134..28015197,28015832..28015956,28016255..28016483, 28016958..28016976)) /locus_tag="TCM_015450" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038586001" /inference="similar to AA sequence:Phytozome:GSVIVT01038586001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7959t2" mRNA complement(join(28013787..28014146,28014951..28015197, 28015832..28015956,28016255..28016483,28016958..28017076)) /locus_tag="TCM_015450" /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038586001" /inference="similar to AA sequence:Phytozome:GSVIVT01038586001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7959t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7959t2" CDS complement(join(28013923..28014146,28014951..28015040, 28015134..28015197,28015832..28015956,28016255..28016375)) /locus_tag="TCM_015450" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY23610.1" /db_xref="Phytozome:GSVIVT01038586001" /db_xref="TAIR:AT5G53490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1Y5" /translation="MATLSTPLSQNALSLRQLSTKRLHCPLHQLPLPIRINCSSASKC VFKTEKSSSPFKELRSVACGLLAVCAVATASPVIAANQRLPPLSTEPNRCERAFVGNT IAALMSDAKFDGADMSEAVMSKAYAVGASFKGANFSNAVLDRVNFDKADLRGAVFKNT VLSGSTFNNAQLEDAVFEDTIIGYIDLQKLCTNTSVSADGRAELGCR" CDS complement(join(28013923..28014146,28014951..28015197, 28015832..28015956,28016255..28016375)) /locus_tag="TCM_015450" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /protein_id="EOY23611.1" /db_xref="Phytozome:GSVIVT01038586001" /db_xref="TAIR:AT5G53490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1Y5" /translation="MATLSTPLSQNALSLRQLSTKRLHCPLHQLPLPIRINCSSASKC VFKTEKSSSPFKELRSVACGLLAVCAVATASPVIAANQRLPPLSTEPNRCERAFVGNT IGQANGVYDKPLDLRFCDYTNEKSNLKGKSLAAALMSDAKFDGADMSEAVMSKAYAVG ASFKGANFSNAVLDRVNFDKADLRGAVFKNTVLSGSTFNNAQLEDAVFEDTIIGYIDL QKLCTNTSVSADGRAELGCR" gene 28016831..28017502 /locus_tag="TCM_015451" /note="dbxref CacaoGD:Thecc1EG015451" mRNA 28016831..28017502 /locus_tag="TCM_015451" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400032315" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15537t00001" CDS 28016928..28017170 /locus_tag="TCM_015451" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23612.1" /translation="MENQGSCLSYMAAWLGTSVAQAFFASLERCSCINLSTSDDADDS EAHDRPLMFTNCSSICSSVTSRTDNLPPNDVVNLPV" gene complement(28019849..28025246) /locus_tag="TCM_015452" /note="dbxref CacaoGD:Thecc1EG015452" mRNA complement(join(28019849..28021658,28021841..28021934, 28022027..28022106,28022712..28022766,28022860..28023017, 28023167..28023257,28023385..28024342)) /locus_tag="TCM_015452" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005111t3" /inference="similar to AA sequence:Phytozome:POPTR_0015s01200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7955t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1496t6" mRNA complement(join(28020162..28021658,28021841..28021934, 28022027..28022106,28022712..28022763,28022860..28023017, 28023167..28023257,28023385..28024685,28025136..28025246)) /locus_tag="TCM_015452" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s01200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005111t3" /inference="similar to AA sequence:Phytozome:POPTR_0015s01200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1496t6" CDS complement(join(28021126..28021658,28021841..28021934, 28022027..28022106,28022712..28022763,28022860..28023017, 28023167..28023257,28023385..28024560)) /locus_tag="TCM_015452" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005111t3" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY23613.1" /db_xref="Phytozome:POPTR_0015s01200.1" /db_xref="TAIR:AT5G24320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDM8" /translation="MGSLREDEERSFFDAHEHIATMSGLNTNYIEIPDPNSGSDNWFE SSFQYDVWIRSPRSVKERRSKFLDWMGVHLDRILCENSVDEPSLEGEVDRLRETSAAV LRTSDFEEEFSSSRSSMSCWSNDNFDLSEESSSRGNFVCREGNEGGGAVCDVDEVGQD GKTSEDCEMGAEHLVTGEESENLSVSSPSFQQLREREVEKQNKSEGLMKRVKNRWLSK LRSIACVVDRQVEDDRLRAIGDDSIVGPKVHRVKVHQCRKRTKELSALYKGQDIQAHE GPILSMKFSPDGQYLASAGEDGVVRIWQVVEDQRCNDLDIPEIDPSCIYFTVNHLSEL KPLFVDKEKVGNLRSLRKTSDSACVIFPPKVFRLLEKPLHEFHGHSGEILDLSWSKKN YLLSSSVDKTVRMWQVGCDHCLRVFSHSNYVTCVQFNPVDDNYFISGSIDGKVRIWAI SGCQVVDWTDVRDIVTAVCYRPDGQGGIVGSMTGSCRFYNMSDNHLQLDAYICLNGKK KSTCRRITGLQFLPQDSSKVMVTCADSQVRILQGLNVICKYRGVRNNGNQTLASFTAD GKHIVSACEDANVYIWNCVAQDEPTLSQAKDIRSCERFSANASIAIPWSGLNGNSENG RQFEVLNDNLPENLPFSSPSYFSLSNEYFLESFPKGSATWPEETLPSSSPMSVSSSMH KSQYKFLKTSCQSTFSSHAWGLVIVTAGSDGRIRSFLNYGLPAPV" CDS complement(join(28021126..28021658,28021841..28021934, 28022027..28022106,28022712..28022766,28022860..28023017, 28023167..28023257,28023385..28024206)) /locus_tag="TCM_015452" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005111t3" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY23614.1" /db_xref="Phytozome:POPTR_0015s01200.1" /db_xref="TAIR:AT5G24320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDM8" /translation="MSCWSNDNFDLSEESSSRGNFVCREGNEGGGAVCDVDEVGQDGK TSEDCEMGAEHLVTGEESENLSVSSPSFQQLREREVEKQNKSEGLMKRVKNRWLSKLR SIACVVDRQVEDDRLRAIGDDSIVGPKVHRVKVHQCRKRTKELSALYKGQDIQAHEGP ILSMKFSPDGQYLASAGEDGVVRIWQVVEDQRCNDLDIPEIDPSCIYFTVNHLSELKP LFVDKEKVGNLRSLRKTSDSACVIFPPKVFRLLEKPLHEFHGHSGEILDLSWSKKNYL LSSSVDKTVRMWQVGCDHCLRVFSHSNYVTCVQFNPVDDNYFISGSIDGKVRIWAISG CQVVDWTDVRDIVTAVCYRPDGQQGGIVGSMTGSCRFYNMSDNHLQLDAYICLNGKKK STCRRITGLQFLPQDSSKVMVTCADSQVRILQGLNVICKYRGVRNNGNQTLASFTADG KHIVSACEDANVYIWNCVAQDEPTLSQAKDIRSCERFSANASIAIPWSGLNGNSENGR QFEVLNDNLPENLPFSSPSYFSLSNEYFLESFPKGSATWPEETLPSSSPMSVSSSMHK SQYKFLKTSCQSTFSSHAWGLVIVTAGSDGRIRSFLNYGLPAPV" mobile_element complement(28031029..28031086) /note="source:scaffold_7_CACTA_0795 2860 2918" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28031625..28031876) /note="source:scaffold_4_CACTA_0482 6077 6296" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28032031..28032090 /note="source:scaffold_10_CACTA_0130 1132 1188" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28032038..28032094 /note="source:CACAO_M_S_E144734_F98_scaffold_10 525 575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28032043..28032116) /note="source:CACAO_M_E49559_F88_scaffold_7 7595 7670" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(28033861..28036476) /locus_tag="TCM_015453" /note="dbxref CacaoGD:Thecc1EG015453" mRNA complement(join(28033861..28034536,28034639..28034851, 28034943..28035043,28035267..28035496,28035604..28035684, 28036083..28036476)) /locus_tag="TCM_015453" /product="Histone-lysine N-methyltransferase ATXR6" /inference="alignment:exonerate- protein:2:ricco:29851.m002516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001425t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02530.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07769t00001" CDS complement(join(28034377..28034536,28034639..28034851, 28034943..28035043,28035267..28035496,28035604..28035684, 28036083..28036368)) /locus_tag="TCM_015453" /note="paralog of Thecc1EG001425t1" /codon_start=1 /product="Histone-lysine N-methyltransferase ATXR6" /protein_id="EOY23615.1" /db_xref="Phytozome:POPTR_0012s02530.1" /db_xref="TAIR:AT5G24330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNE9" /translation="MAVASLTTMKKTAMVLRHRTQAPRRYSDTIFGDEDGLDFEDVSC QRCGSGDFGSKLLLCDKCDKGYHIFCLRPILASVPKGAWFCPSCSNIKKPQLFPLVQT KIVDFFRIRRLPESTERLSQTNIKKRKRASGLAMSKKRRKLLAFNPTEDPQRRLEQMA SLATALESSGTEYSNELTYRPGMAPRSANSAALEKGGMQVLPKEDIETLNLCKRMMEE GEYPPLLVVFDPVEGFTVQADRCIKDLTIITEYVGDVDYLNNREHDDGDSMMTLLHAS NPSKSLVICPDKRGNIARFVNGINNFSPDGKKKQNVKCVRYDVNGECRVLLIANRDIR KGEKLYYDYNGYEHEYPTEHFV" gene 28037145..28042919 /locus_tag="TCM_015454" /note="dbxref CacaoGD:Thecc1EG015454" mRNA join(28037145..28037524,28037611..28037739, 28038431..28038554,28039700..28040130,28040398..28040474, 28040595..28040730,28040883..28041086,28042003..28042512, 28042594..28042919) /locus_tag="TCM_015454" /product="3'-5' exonuclease domain-containing protein" /inference="alignment:exonerate- protein:2:ricco:30098.m001710" /inference="similar to AA sequence:ricco:30098.m001710" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7949t3" CDS join(28037159..28037524,28037611..28037739, 28038431..28038554,28039700..28040130,28040398..28040474, 28040595..28040730,28040883..28041086,28042003..28042062) /locus_tag="TCM_015454" /note="dbxref ricco:30098.m001710" /codon_start=1 /product="3'-5' exonuclease domain-containing protein" /protein_id="EOY23616.1" /db_xref="TAIR:AT5G24340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FIN8" /translation="MDVHLVSSIDSDEFTHLTRALSRSTLIGLDAEWKPIRSQQSTFP TVTLLQLACQLGDDPAEWDESLVFLLDLASIPLSSIWELLKDVFVSPDILKLGFKFKQ DLIFLSSTFGAEGCDPAFDKVEPYLDITNIHKFLQHKQGKKVSKDTKSLSAICEEVLG ISLSKALQCSDWSHRPLTEEQLRYAATDAHCLLEIFKIFQAMVVKEGKSCNDVKELHQ FNLNLGLKDIFQMPDGDNKLAGTKFCNALDIVQATASSEDCGRIARGLEVIRKTKPMD ESLWKIVRKYGEKLLLCESDRKPKTSRKKGKKRSSVVAVCKKNQLDSSGGWQGLPPWD ISLGGDGWPKFLCDVMVEGLAKHLRCVGVDAAIPHSKKPEPRELIDQAYKEKRVLLTR DAKLLRHQYLLKNQIYRVKSLLKNEQLIEVIEIFQLKISEDQLMSRCTKCNGRFVQKP LTTEEAIEAAKGFQRIPNCLFDKNLEFWQCMDCNQLYWEGTQYHNAVQKFIDVCKLNE " gene <28043324..28044955 /locus_tag="TCM_015455" /note="dbxref CacaoGD:Thecc1EG015455" mRNA join(<28043324..28043672,28044926..28044955) /locus_tag="TCM_015455" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc650t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc629t2" CDS <28043325..28043591 /locus_tag="TCM_015455" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY23617.1" /translation="LRRTILAVKSFIHRKNLQVFLLRLSNDLLLPHPRNCHFFATLQP VLSSRQFLFSPCAPTPLAYSELSLVGSTSLSTHSVFFSFLFFTF" gene 28044177..28046054 /locus_tag="TCM_015456" /note="dbxref CacaoGD:Thecc1EG015456" mRNA join(28044177..28044416,28044923..28045532, 28045752..28045822) /locus_tag="TCM_015456" /product="F-box family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005109t2" /inference="similar to AA sequence:Phytozome:POPTR_0012s02570.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g7992t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc650t6_C2; inference alignment:Newbler:10:TSA:cgbaB_g08933t00001" mRNA join(28044260..28044416,28044926..28046054) /locus_tag="TCM_015456" /product="F-box family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015683t3" /inference="similar to AA sequence:Phytozome:GSVIVT01038591001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08933t00001; inference alignment:Newbler:10:TSA:cgbaB_g08933t00001" CDS join(28044393..28044416,28044923..28045532, 28045752..28045807) /locus_tag="TCM_015456" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005109t2" /codon_start=1 /product="F-box family protein, putative isoform 2" /protein_id="EOY23619.1" /db_xref="Phytozome:POPTR_0012s02570.1" /db_xref="TAIR:AT4G24060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1Z1" /translation="MDTAQWPQQGIGVVKPMEASRPMVERRARPQNDQALNCPRCNST NTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSSSSSSSPSI ASSKKVGDLTPPGPASQNPKIHEGQDLNLAYPPPTEDYNSFSKFVEVPYGTGSKSNHH NSSSSPTSTHLNATELLKTGRGLSSFMSIPVSDSNTVYSSGFPIQDLKATLINRTEAG VLFIAFLLAWW" CDS join(28044393..28044416,28044926..28045723) /locus_tag="TCM_015456" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015683t3" /codon_start=1 /product="F-box family protein, putative isoform 1" /protein_id="EOY23618.1" /db_xref="Phytozome:GSVIVT01038591001" /db_xref="TAIR:AT4G24060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1Z1" /translation="MDTAQWPQGIGVVKPMEASRPMVERRARPQNDQALNCPRCNSTN TKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSSSSSSSPSIA SSKKVGDLTPPGPASQNPKIHEGQDLNLAYPPPTEDYNSFSKFVEVPYGTGSKSNHHN SSSSPTSTHLNATELLKTGRGLSSFMSIPVSDSNTVYSSGFPIQDLKATLNFSLDGFE TSYGSLQGVQESGARLLFPMEELKQVPSTNELEQSGGQGESTGYWSGMLGGGGHW" gene 28049297..28052228 /locus_tag="TCM_015457" /note="dbxref CacaoGD:Thecc1EG015457" mRNA 28049297..28052228 /locus_tag="TCM_015457" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038592001" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02580.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02580.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc561t9" CDS 28049333..28051828 /locus_tag="TCM_015457" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY23620.1" /db_xref="Phytozome:POPTR_0012s02580.1" /db_xref="TAIR:AT2G13600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7D1" /translation="MMSQMWESITIPPSSPPLNQNPPKPRYSHMPNTLSLLDKPISST AYASILEACNDPSLGKQVHAHTLKTGFFAHEFVDTKLLQMYAKFGSLEDADLLFDKMA LRNLYSWTAMLRLYVDYGLFEEAFRLFEKLQLEELLLDFFVFPVVLKICSGLGNVEVG RQLHGILIKYQFVLNVYVGNALIDMYGKCGSLDDAKKVLETIPEKDRVSWNAVVTACA TNGKVYEALGFFERMSSFENLRPNLVSWSAVIGGFSQNCYDEEAIEMLFRMVGEGIEP NAQTLASVLPACARLQNLSLGKEFHGYITRHRFMSNAIVVNGLIDLYRRCGDMKSAFH LFSKFSVKNVVSCNTVIVGSCENGNVCKAKELFDRMEIMAIKKDIISWNSMISGYVNN SLFDEALDLFKHVLMEDGIEPDSFTLGSVLTACADTGSLRLGKGIHSQAIVRGLQSNT FVGGALVEMYCKCQDLRAAQIAFNEVTERDTATWNALISGYARCNQIEDIQHLLRKMN EDGFKPNVYTWNGIIAGHVENDLHDKAMQLIFEMQTSNVRPDIYTIGIILPACSRSAT IARGKQVHAYSIRCGYDADVYIGAALVDMYAKCGSIHHAPLAYNRISDPNLVSHNAML TAYAMHGHGEDGIALIRGMLANGFRPDQVTFLSALSSCVHVGSVEMGQELFDLMQHYD VKPTIKHYTCMIDLLSRAGQLNEAYELIQRVPMEADSVMWGALFGGCVIHNNLELGEI AAKRLIALEPNNTGNYVPLANLYAYAGKWSDLASTRKKIKDIGMFKTPGCSWIEDRGD SHVFLAHDKSHKRTEDIYATLDKLTLHMKTVTL" gene complement(28051895..28054909) /locus_tag="TCM_015458" /note="dbxref CacaoGD:Thecc1EG015458" mRNA complement(join(28051895..28052267,28052558..28052631, 28053584..28053682,28053981..28054186,28054267..28054909)) /locus_tag="TCM_015458" /product="Binding" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05520.1" /inference="similar to AA sequence:Phytozome:GSVIVT01038593001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03347t00001" CDS complement(join(28052042..28052267,28052558..28052631, 28053584..28053682,28053981..28054186,28054267..28054597)) /locus_tag="TCM_015458" /codon_start=1 /product="Binding" /protein_id="EOY23621.1" /db_xref="Phytozome:GSVIVT01038593001" /db_xref="TAIR:AT4G27750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7D2" /translation="MNLKEALWSKPTDSNASPSPSSSSPRDPESEAASAAATSAVGEL VNSLNKQRIYREVTLALRTGLRDARAEFSFLRVRGLRFLLKSLRSIAQSDSSIILFSH TQSIPDLRVVPVLFEHSLKETEDDRVGSLDHIFSVEPMKINSPSTDAEVALALRVLEG CCLLHPESTRLAHQHKAIPVLMNVLSTRGVLEQGACLDALISIMLDSSANQMDFEACN GIEEVAELIRDKQVDENLRLKCGEFLLLLIGHVNGRERSPMATIHEDIRRLLGEKSAS LIWAASQFGSTLDPDQRLTALHIQARRVLESVDLY" mobile_element 28052325..28052382 /note="source:scaffold_6_CACTA_0712 1305 1362" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28052340..28052393) /note="source:CACAO_M_E47_F305_scaffold_1 1289 1342" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28052344..28052415 /note="source:CACAO_M_E42040_F98_scaffold_5 634 700" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(28054817..28057392) /locus_tag="TCM_015459" /note="dbxref CacaoGD:Thecc1EG015459" mRNA complement(join(28054817..28054902,28055291..28055424, 28055647..28055696,28055796..28056070,28056460..28056587, 28057252..28057380)) /locus_tag="TCM_015459" /product="Yippee family zinc-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g41160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005102t1" /inference="similar to AA sequence:Phytozome:Glyma04g41160.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8018t1" mRNA complement(join(28055396..28056018,28056460..28056587, 28057252..28057392)) /locus_tag="TCM_015459" /product="Yippee family zinc-binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g41160.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00910t00004; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8018t1; inference alignment:Newbler:10:TSA:cgbaP1_g12255t00001" mRNA complement(join(28055566..28056070,28056460..28056587, 28057252..28057359)) /locus_tag="TCM_015459" /product="Yippee family zinc-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g41160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005102t1" /inference="similar to AA sequence:Phytozome:Glyma04g41160.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14565t00001; alternateUTRof:Thecc1EG015459t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8018t1; inference alignment:Newbler:10:TSA:cgbaP1_g12255t00001" CDS complement(28055574..28055783) /locus_tag="TCM_015459" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 2" /protein_id="EOY23623.1" /db_xref="TAIR:AT4G27745.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T096" /translation="MLHIDLVQKLVTRLEICHCFPLCILYIAQRPQNARWIDHSHINK LRYCQLLSTTSHCVLWIQHCVNTCG" CDS complement(join(28055843..28056070,28056460..28056552)) /locus_tag="TCM_015459" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005102t1" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 1" /protein_id="EOY23622.1" /db_xref="Phytozome:Glyma04g41160.1" /db_xref="TAIR:AT4G27745.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T096" /translation="MAESFGPRLYSCSNCRNHVSLHDDIISKSFQGRNGRAFLFSHAM NVVVGPKEDRHLLTGLHTVADVYCADCREVLGWKYERAYEVSQKYKEGKFILEKAKIV KENW" CDS complement(join(28055843..28056070,28056460..28056552)) /locus_tag="TCM_015459" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005102t1" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 1" /protein_id="EOY23624.1" /db_xref="Phytozome:Glyma04g41160.1" /db_xref="TAIR:AT4G27745.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T096" /translation="MAESFGPRLYSCSNCRNHVSLHDDIISKSFQGRNGRAFLFSHAM NVVVGPKEDRHLLTGLHTVADVYCADCREVLGWKYERAYEVSQKYKEGKFILEKAKIV KENW" gene complement(28057865..28061979) /locus_tag="TCM_015461" /note="dbxref CacaoGD:Thecc1EG015461" mRNA complement(join(28057865..28057978,28059019..28059531, 28059620..28059949,28061409..28061979)) /locus_tag="TCM_015461" /product="Yippee family zinc-binding protein, putative" /inference="alignment:exonerate- protein:2:ricco:30098.m001711" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015463t4" /inference="similar to AA sequence:ricco:30098.m001711" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9424t1" CDS complement(join(28059307..28059531,28059620..28059703)) /locus_tag="TCM_015461" /note="dbxref ricco:30098.m001711; paralog of Thecc1EG015463t4" /codon_start=1 /product="Yippee family zinc-binding protein, putative" /protein_id="EOY23625.1" /db_xref="TAIR:AT4G27740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2V3E2" /translation="MEFGGLYSCRNCLNPLALGDDLVSKNFKAKSGQAYMFIHAMNVV LGPKYDKQLLTGLHTIADIHCSKCGEAVGWKYVQAFDLKQRYKEGKFVLETLKMIEQY " gene 28061390..28062425 /locus_tag="TCM_015462" /note="dbxref CacaoGD:Thecc1EG015462" mRNA join(28061390..28061656,28061832..28061988, 28062073..28062425) /locus_tag="TCM_015462" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage" CDS join(28061433..28061656,28061832..28061988, 28062073..28062138) /locus_tag="TCM_015462" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23626.1" /translation="MLNCKLWGITWVASGNGFSFFSARQHGNSTSCSSDIRNMIILWS LWLSCSEIVFHGKNPDCNLLHDIILVRLAYRPGSAGKGGVIRDHEGFIKGIFSHHIGI EDSNYAELLAIKEGDGLAKAGVLRQISPLPTALTPLMCLPCPTLCW" mobile_element complement(28062384..28062493) /note="source:INTACT135F_F90_scaffold_2-int 12866 14003" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(28062494..28063372) /note="source:scaffold_9_CACTA_0932 2788 3593" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28062706..28063381) /note="source:CACAO_Mutator_E1888_scaffold_9 5805 6474" /mobile_element_type="transposon:TIR/Mutator" mobile_element 28063593..28063972 /note="source:scaffold_1_CACTA_0008 14045 14434" /mobile_element_type="transposon:TIR/CACTA" gene complement(28063953..28065263) /locus_tag="TCM_015463" /note="dbxref CacaoGD:Thecc1EG015463" mRNA complement(join(28063953..28064693,28064796..28064915, 28065023..28065263)) /locus_tag="TCM_015463" /product="Yippee family zinc-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30098.m001711.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015461t1" /inference="similar to AA sequence:ricco:30098.m001711" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10382t00001" mRNA complement(join(28064072..28064693,28064796..28064911, 28065023..28065052)) /locus_tag="TCM_015463" /product="Yippee family zinc-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30098.m001711.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015461t1" /inference="similar to AA sequence:ricco:30098.m001711" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2112t3_C2; alternateUTRof:Thecc1EG015463t1; inference alignment:Newbler:10:TSA:cgbaP1_g10382t00001" mRNA complement(join(28064072..28064693,28064796..28064911, 28065019..28065048)) /locus_tag="TCM_015463" /product="Yippee family zinc-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30098.m001711.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015461t1" /inference="similar to AA sequence:ricco:30098.m001711" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2112t1_C2; alternateUTRof:Thecc1EG015463t1; inference alignment:Newbler:10:TSA:cgbaP1_g10382t00001" mRNA complement(join(28064242..28064693,28064796..28064915, 28065019..28065208)) /locus_tag="TCM_015463" /product="Yippee family zinc-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30098.m001711.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015461t1" /inference="similar to AA sequence:ricco:30098.m001711" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03018t00002; alternateUTRof:Thecc1EG015463t1; inference alignment:Newbler:10:TSA:cgbaP1_g10382t00001" CDS complement(join(28064469..28064693,28064796..28064885)) /locus_tag="TCM_015463" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30098.m001711; paralog of Thecc1EG015461t1" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 1" /protein_id="EOY23627.1" /db_xref="TAIR:AT4G27740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDM2" /translation="MESGGLAFYSCRNCRNPLALGDDLVSKNYIAKSGKAYMFLHAMN IVLGPKQDRQLITGLYTTADIYCSKCGEELGWKYVQAYDLKNRFKEGKFILEKLKMVE EH" CDS complement(join(28064469..28064693,28064796..28064885)) /locus_tag="TCM_015463" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30098.m001711; paralog of Thecc1EG015461t1" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 1" /protein_id="EOY23628.1" /db_xref="TAIR:AT4G27740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDM2" /translation="MESGGLAFYSCRNCRNPLALGDDLVSKNYIAKSGKAYMFLHAMN IVLGPKQDRQLITGLYTTADIYCSKCGEELGWKYVQAYDLKNRFKEGKFILEKLKMVE EH" CDS complement(join(28064469..28064693,28064796..28064885)) /locus_tag="TCM_015463" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30098.m001711; paralog of Thecc1EG015461t1" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 1" /protein_id="EOY23629.1" /db_xref="TAIR:AT4G27740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDM2" /translation="MESGGLAFYSCRNCRNPLALGDDLVSKNYIAKSGKAYMFLHAMN IVLGPKQDRQLITGLYTTADIYCSKCGEELGWKYVQAYDLKNRFKEGKFILEKLKMVE EH" CDS complement(join(28064469..28064693,28064796..28064885)) /locus_tag="TCM_015463" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30098.m001711; paralog of Thecc1EG015461t1" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 1" /protein_id="EOY23630.1" /db_xref="TAIR:AT4G27740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDM2" /translation="MESGGLAFYSCRNCRNPLALGDDLVSKNYIAKSGKAYMFLHAMN IVLGPKQDRQLITGLYTTADIYCSKCGEELGWKYVQAYDLKNRFKEGKFILEKLKMVE EH" gene 28066921..28075105 /locus_tag="TCM_015464" /note="dbxref CacaoGD:Thecc1EG015464" mRNA join(28066921..28067326,28068546..28068667, 28068753..28068990,28069079..28069140,28069217..28069298, 28070834..28070953,28071073..28071418,28075025..28075105) /locus_tag="TCM_015464" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30186.m001323" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035511t1" /inference="similar to AA sequence:ricco:30186.m001323" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9433t1" mRNA join(28066984..28067326,28068546..28068667, 28068753..28068990,28069079..28069140,28069217..28069298, 28074352..28074914) /locus_tag="TCM_015464" /product="RNA-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30186.m001323" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035511t1" /inference="similar to AA sequence:ricco:30186.m001323" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8187t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9433t1" CDS join(28067233..28067326,28068546..28068667, 28068753..28068990,28069079..28069140,28069217..28069298, 28074352..28074413) /locus_tag="TCM_015464" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30186.m001323; paralog of Thecc1EG035511t1" /codon_start=1 /product="RNA-binding family protein isoform 2" /protein_id="EOY23632.1" /db_xref="TAIR:AT1G21320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CV86" /translation="MADSYWRYSDSRQPPPSSIPSLVGKRPRSDYDVSGGHELSSYYS RGDDRGAVRAIRDSDSIGASYDRYLRSTQMSSYSGSQSARPMSGGMPGRSVDDPRIMG IGGVDPGQTVKDRTLGFGGGRPEAPLPPDASSTLFVEGLPSDCTRREVSHIFRPFVGY KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGIEGNGQPNMPYGYCSGGV T" CDS join(28067233..28067326,28068546..28068667, 28068753..28068990,28069079..28069140,28069217..28069298, 28070834..28070937) /locus_tag="TCM_015464" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30186.m001323; paralog of Thecc1EG035511t1" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY23631.1" /db_xref="TAIR:AT1G21320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CV86" /translation="MADSYWRYSDSRQPPPSSIPSLVGKRPRSDYDVSGGHELSSYYS RGDDRGAVRAIRDSDSIGASYDRYLRSTQMSSYSGSQSARPMSGGMPGRSVDDPRIMG IGGVDPGQTVKDRTLGFGGGRPEAPLPPDASSTLFVEGLPSDCTRREVSHIFRPFVGY KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYKFDEHDRDSVKLRLQFA RYPGARSGGGHRGKR" misc_feature join(28069241..28069298,28074352..28075050) /locus_tag="TCM_015464" /note="Gene fragment of Thecc1EG015464t1; dbxref gnl|CacaoGD|Thecc1EG015464t1; quality class is mediumpartial-partof is thecc1eg015464t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1614t3_C2; dbxref CacaoGD:Thecc1EG015465t1" gene 28069269..28079002 /locus_tag="TCM_015466" /note="dbxref CacaoGD:Thecc1EG015466" mRNA join(28069269..28069298,28075053..28076058, 28076426..28076523,28076616..28076927,28077348..28077445, 28077547..28077608,28077704..28077886,28077981..28079002) /locus_tag="TCM_015466" /product="Oligopeptide transporter 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015669t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02660.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc160t14; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc160t14; inference alignment:Newbler:10:TSA:cgbaP2_g06143t00001" mRNA join(28071587..28072071,28075025..28076058, 28076426..28076523,28076616..28077185,28077350..28077608, 28077704..28077886,28077981..28078964) /locus_tag="TCM_015466" /product="Oligopeptide transporter 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015669t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02660.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc160t14" mobile_element 28073435..28074081 /note="source:scaffold_2_CACTA_0244 12380 12997" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28073447..28073917) /note="source:scaffold_9_CACTA_0932 3089 3561" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28073584..28074385) /note="source:INTACT135F_F90_scaffold_2-int 12865 13668" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(28075585..28076058,28076426..28076523, 28076616..28077185,28077350..28077608,28077704..28077886, 28077981..28078595) /locus_tag="TCM_015466" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015669t1" /codon_start=1 /product="Oligopeptide transporter 1 isoform 1" /protein_id="EOY23633.1" /db_xref="Phytozome:POPTR_0012s02660.1" /db_xref="TAIR:AT4G27730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GWM1" /translation="MGETSEIQAMELEVVEECPVKQVELTVPKTDDPTLPAVTFRMWV LGLGTSVILSFVNQFFWYRKMPLNITSISAMIAVVPLGHLMARTLPHRRFLSNTRWEF TMNPGPFNMKEHVLITIFANSGAGTVYATHILSAVKLYYKRKLTFLPALLVMITTQVL GFGWAGIFRKYLVEPGEMWWPSNLVMVSLFRALHEKEKRAKGGTTLNQFFLLVLISSF AYYVLPGYLFSTLTSFSWVCWLAPKSILVQQLGSGLHGLGIGSFGIDWATISSYLGSP LASPWFATANIAVGFFLVMYVMTPLTYWFDVYKAKNFPIYSSELFKSNGESYDILSIV NPMFHLDKKVYAQNGRVHLSTFFAMTYGLGFATLTATIFHVLLFDGRELWRQTKSAFK GDKKMDIHTKLMQKYKLVPTWWFVVILLSNIALILFACEHYNESLQLPWWGVLLACAI AFFFTLPIGIIAATTNQAPGLNIITEYVIGYMYPEHPVANMCFKVYGYISMTQALTFI SDFKLGHYMKIPPRSMFMAQVVGTLVAVVVYTITAWWLMEEIPHLCDTSLLPPDSPWT CPMDRVFFDASVIWGLVGPRRIFGVEGEYGNVNWFFLAGAVAPVLVWLAHKTFPNREW IRLIHMPVLIGATSMMPPASAVNFSSWLIVGFLSGFVVFKYRPQWWKRYNYVLSGGLD AGTAFMTVLLFITLQSKDIDLQWWGNKGEGCPLAACPTAKGVMADGCPVA" CDS join(28075585..28076058,28076426..28076523, 28076616..28076927,28077348..28077445,28077547..28077608, 28077704..28077886,28077981..28078595) /locus_tag="TCM_015466" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015669t1" /codon_start=1 /product="Oligopeptide transporter 1 isoform 2" /protein_id="EOY23634.1" /db_xref="Phytozome:POPTR_0012s02660.1" /db_xref="TAIR:AT4G27730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GWM1" /translation="MGETSEIQAMELEVVEECPVKQVELTVPKTDDPTLPAVTFRMWV LGLGTSVILSFVNQFFWYRKMPLNITSISAMIAVVPLGHLMARTLPHRRFLSNTRWEF TMNPGPFNMKEHVLITIFANSGAGTVYATHILSAVKLYYKRKLTFLPALLVMITTQVL GFGWAGIFRKYLVEPGEMWWPSNLVMVSLFRALHEKEKRAKGGTTLNQFFLLVLISSF AYYVLPGYLFSTLTSFSWVCWLAPKSILVQQLGSGLHGLGIGSFGIDWATISSYLGSP LASPWFATANIAVGFFLVIENYGDKPKVLLKVIRRWIFTQSLCRSTNLFLHACAIAFF FTLPIGIIAATTNQAPGLNIITEYVIGYMYPEHPVANMCFKVYGYISMTQALTFISDF KLGHYMKIPPRSMFMAQVVGTLVAVVVYTITAWWLMEEIPHLCDTSLLPPDSPWTCPM DRVFFDASVIWGLVGPRRIFGVEGEYGNVNWFFLAGAVAPVLVWLAHKTFPNREWIRL IHMPVLIGATSMMPPASAVNFSSWLIVGFLSGFVVFKYRPQWWKRYNYVLSGGLDAGT AFMTVLLFITLQSKDIDLQWWGNKGEGCPLAACPTAKGVMADGCPVA" mRNA join(28076499..28076523,28076616..28077185, 28077350..28077608,28077704..28077886,28077981..28079002) /locus_tag="TCM_015466" /product="Oligopeptide transporter 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015669t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02660.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc837t24; inference alignment:Newbler:10:TSA:cgbaP2_g06143t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc160t14" CDS join(28076507..28076523,28076616..28077185, 28077350..28077608,28077704..28077886,28077981..28078595) /locus_tag="TCM_015466" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015669t1" /codon_start=1 /product="Oligopeptide transporter 1 isoform 3" /protein_id="EOY23635.1" /db_xref="Phytozome:POPTR_0012s02660.1" /db_xref="TAIR:AT4G27730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GWM1" /translation="MVSLFRALHEKEKRAKGGTTLNQFFLLVLISSFAYYVLPGYLFS TLTSFSWVCWLAPKSILVQQLGSGLHGLGIGSFGIDWATISSYLGSPLASPWFATANI AVGFFLVMYVMTPLTYWFDVYKAKNFPIYSSELFKSNGESYDILSIVNPMFHLDKKVY AQNGRVHLSTFFAMTYGLGFATLTATIFHVLLFDGRELWRQTKSAFKGDKKMDIHTKL MQKYKLVPTWWFVVILLSNIALILFACEHYNESLQLPWWGVLLACAIAFFFTLPIGII AATTNQAPGLNIITEYVIGYMYPEHPVANMCFKVYGYISMTQALTFISDFKLGHYMKI PPRSMFMAQVVGTLVAVVVYTITAWWLMEEIPHLCDTSLLPPDSPWTCPMDRVFFDAS VIWGLVGPRRIFGVEGEYGNVNWFFLAGAVAPVLVWLAHKTFPNREWIRLIHMPVLIG ATSMMPPASAVNFSSWLIVGFLSGFVVFKYRPQWWKRYNYVLSGGLDAGTAFMTVLLF ITLQSKDIDLQWWGNKGEGCPLAACPTAKGVMADGCPVA" gene complement(28076618..28084616) /locus_tag="TCM_015467" /note="dbxref CacaoGD:Thecc1EG015467" mRNA complement(join(28076618..28076963,28079279..28080309, 28080454..28080528,28080743..28081233,28081722..28082025, 28082302..28083766,28084081..28084616)) /locus_tag="TCM_015467" /product="U-box domain-containing protein 44, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038602001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005092t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038602001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b014943t1a2; alternateUTRof:Thecc1EG015467t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1584t1" mRNA complement(join(28078973..28079002,28079279..28080309, 28080454..28080528,28080743..28081233,28081722..28082025, 28082302..28083766,28084081..28084616)) /locus_tag="TCM_015467" /product="U-box domain-containing protein 44, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038602001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005092t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038602001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1584t1" mRNA complement(join(28078981..28080309,28080743..28081233, 28081722..28082025,28082302..28083766,28084081..28084266)) /locus_tag="TCM_015467" /product="U-box domain-containing protein 44, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038602001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005092t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038602001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1584t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1584t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8213t1" CDS complement(join(28079314..28080309,28080743..28081233, 28081722..28082025,28082302..28083528)) /locus_tag="TCM_015467" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005092t1" /codon_start=1 /product="U-box domain-containing protein 44, putative isoform 3" /protein_id="EOY23638.1" /db_xref="Phytozome:GSVIVT01038602001" /db_xref="TAIR:AT1G20780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UCX6" /translation="MEKGIITSTPLVSLPELFSQTIVAIFDCIHAAKGVLTQMENFEK FSNYLEKITFILKEFSKSYVDDLESLRKALAILNLEVKAVKQLALECGTRNKVYLFIS CRKILKQLENSTKEICQALSLIPLASIDGPLRIRHNRLCKDMLEAEYSPGIVEDEILE KIESGVKERYVDRCYANYLLLSIAEAAGVPDEQLALKKEFEELKSEIEDLKLGVDATE ARRMEQIVMLLEKADATTSYEEKAQRYLDERNSLGRQPLEPLQSFYCPITMDVMVDPV EISSGRTFERSAIERWFADGNKHCPSTSIHLDSLVLQPNKTLRQSIEEWKDRNKMITI VSIKPKLQSNEEQEVLQSLCELQDLCTERELHRVWVTFEDYKPILIGLLSAKNREIRT QALAILCILAKDSHDNKERIANVDRALESIVRSLARQIKESKLALQLLLQLSRSSAGR DAIGTIQGCIFLVVTMLNSDDAQASGDSRELLDNLSFLDQNIIEMAKANYFKPLLQLL SSGPDNVRLLMAKTLSEIELTDHHKLSLFKDGALGPLLQLLSHDNLQVKTVAVRALQN LLNLPQNGLQMIKEGALETLFEILYRHSLSSPSLREQVAAVIMHLAKSTNTEEADREQ ISLVKSDEDIFKLFSLISLTGPDIQRNILQAFCEMCQSSSGLDIRAKLRQLSAVQVLV QLCEVNNHLVRASAVKLFCCLTVDGDDTSFQEHVGQRCIDTLLRIIKTSSDEEETAAA MGIVSNLPKDIEMTQWLLDSGALDIIFVSMTDRYRNASHKKQEIENAVRALCRFTLST NKEWQKKVAETGIIPVLVQLLVSGTSLTKQNAAISLKQFSESSTSLSHPVKKTKAFLC CFAATETGCPVHQGICSVESSFCILEANAVEPLVRILGEGDLGACEASLDALLTLIDD ERLQNGCKVLVKANAIPPIIKLLSSTSTILQEKTLRALERMFRLAEMKQAYATLAQMP LVDITQRGTGGMKSLAAKVLAQLNVLGEQSSYF" CDS complement(join(28079314..28080309,28080454..28080528, 28080743..28081233,28081722..28082025,28082302..28083528)) /locus_tag="TCM_015467" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005092t1" /codon_start=1 /product="U-box domain-containing protein 44, putative isoform 1" /protein_id="EOY23636.1" /db_xref="Phytozome:GSVIVT01038602001" /db_xref="TAIR:AT1G20780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UCX6" /translation="MEKGIITSTPLVSLPELFSQTIVAIFDCIHAAKGVLTQMENFEK FSNYLEKITFILKEFSKSYVDDLESLRKALAILNLEVKAVKQLALECGTRNKVYLFIS CRKILKQLENSTKEICQALSLIPLASIDGPLRIRHNRLCKDMLEAEYSPGIVEDEILE KIESGVKERYVDRCYANYLLLSIAEAAGVPDEQLALKKEFEELKSEIEDLKLGVDATE ARRMEQIVMLLEKADATTSYEEKAQRYLDERNSLGRQPLEPLQSFYCPITMDVMVDPV EISSGRTFERSAIERWFADGNKHCPSTSIHLDSLVLQPNKTLRQSIEEWKDRNKMITI VSIKPKLQSNEEQEVLQSLCELQDLCTERELHRVWVTFEDYKPILIGLLSAKNREIRT QALAILCILAKDSHDNKERIANVDRALESIVRSLARQIKESKLALQLLLQLSRSSAGR DAIGTIQGCIFLVVTMLNSDDAQASGDSRELLDNLSFLDQNIIEMAKANYFKPLLQLL SSGPDNVRLLMAKTLSEIELTDHHKLSLFKDGALGPLLQLLSHDNLQVKTVAVRALQN LLNLPQNGLQMIKEGALETLFEILYRHSLSSPSLREQVAAVIMHLAKSTNTEEADREQ ISLVKSDEDIFKLFSLISLTGPDIQRNILQAFCEMCQSSSGLDIRAKLRQVSGGCHLC NAIYSDSSSVFSPLRNQLSAVQVLVQLCEVNNHLVRASAVKLFCCLTVDGDDTSFQEH VGQRCIDTLLRIIKTSSDEEETAAAMGIVSNLPKDIEMTQWLLDSGALDIIFVSMTDR YRNASHKKQEIENAVRALCRFTLSTNKEWQKKVAETGIIPVLVQLLVSGTSLTKQNAA ISLKQFSESSTSLSHPVKKTKAFLCCFAATETGCPVHQGICSVESSFCILEANAVEPL VRILGEGDLGACEASLDALLTLIDDERLQNGCKVLVKANAIPPIIKLLSSTSTILQEK TLRALERMFRLAEMKQAYATLAQMPLVDITQRGTGGMKSLAAKVLAQLNVLGEQSSYF " CDS complement(join(28079314..28080309,28080454..28080528, 28080743..28081233,28081722..28082025,28082302..28083528)) /locus_tag="TCM_015467" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005092t1" /codon_start=1 /product="U-box domain-containing protein 44, putative isoform 1" /protein_id="EOY23637.1" /db_xref="Phytozome:GSVIVT01038602001" /db_xref="TAIR:AT1G20780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UCX6" /translation="MEKGIITSTPLVSLPELFSQTIVAIFDCIHAAKGVLTQMENFEK FSNYLEKITFILKEFSKSYVDDLESLRKALAILNLEVKAVKQLALECGTRNKVYLFIS CRKILKQLENSTKEICQALSLIPLASIDGPLRIRHNRLCKDMLEAEYSPGIVEDEILE KIESGVKERYVDRCYANYLLLSIAEAAGVPDEQLALKKEFEELKSEIEDLKLGVDATE ARRMEQIVMLLEKADATTSYEEKAQRYLDERNSLGRQPLEPLQSFYCPITMDVMVDPV EISSGRTFERSAIERWFADGNKHCPSTSIHLDSLVLQPNKTLRQSIEEWKDRNKMITI VSIKPKLQSNEEQEVLQSLCELQDLCTERELHRVWVTFEDYKPILIGLLSAKNREIRT QALAILCILAKDSHDNKERIANVDRALESIVRSLARQIKESKLALQLLLQLSRSSAGR DAIGTIQGCIFLVVTMLNSDDAQASGDSRELLDNLSFLDQNIIEMAKANYFKPLLQLL SSGPDNVRLLMAKTLSEIELTDHHKLSLFKDGALGPLLQLLSHDNLQVKTVAVRALQN LLNLPQNGLQMIKEGALETLFEILYRHSLSSPSLREQVAAVIMHLAKSTNTEEADREQ ISLVKSDEDIFKLFSLISLTGPDIQRNILQAFCEMCQSSSGLDIRAKLRQVSGGCHLC NAIYSDSSSVFSPLRNQLSAVQVLVQLCEVNNHLVRASAVKLFCCLTVDGDDTSFQEH VGQRCIDTLLRIIKTSSDEEETAAAMGIVSNLPKDIEMTQWLLDSGALDIIFVSMTDR YRNASHKKQEIENAVRALCRFTLSTNKEWQKKVAETGIIPVLVQLLVSGTSLTKQNAA ISLKQFSESSTSLSHPVKKTKAFLCCFAATETGCPVHQGICSVESSFCILEANAVEPL VRILGEGDLGACEASLDALLTLIDDERLQNGCKVLVKANAIPPIIKLLSSTSTILQEK TLRALERMFRLAEMKQAYATLAQMPLVDITQRGTGGMKSLAAKVLAQLNVLGEQSSYF " gene 28085755..28092855 /locus_tag="TCM_015468" /note="dbxref CacaoGD:Thecc1EG015468" mRNA join(28085755..28086040,28086214..28086517, 28086627..28086719,28086801..28086891,28087538..28087604, 28088300..28088342,28088755..28088926,28089025..28089123, 28089231..28089299,28089589..28089727,28089988..28090189, 28090659..28090768,28090924..28090963,28091739..28092817) /locus_tag="TCM_015468" /product="Transcription factor IIIC, subunit 5, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038248001" /inference="similar to AA sequence:Phytozome:GSVIVT01038248001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8233t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8233t1" mRNA join(28085755..28086040,28086214..28086517, 28086627..28086719,28086801..28086891,28087538..28087604, 28088300..28088342,28088755..28088926,28089025..28089123, 28089231..28089299,28089589..28089727,28089988..28090189, 28090668..28090768,28090924..28090963,28091739..28092817) /locus_tag="TCM_015468" /product="Transcription factor IIIC, subunit 5, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038248001" /inference="similar to AA sequence:Phytozome:GSVIVT01038248001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8233t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8233t1" mRNA join(28085835..28086040,28086214..28086517, 28086627..28086719,28086801..28086891,28087538..28087604, 28088688..28088926,28089025..28089123,28089231..28089299, 28089589..28089727,28089832..28089877,28089977..28090189, 28090659..28090768,28090924..28090963,28091676..28092855) /locus_tag="TCM_015468" /product="General transcription factor 3C polypeptide 5, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038248001" /inference="similar to AA sequence:Phytozome:GSVIVT01038248001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8233t1" CDS join(28085906..28086040,28086214..28086517, 28086627..28086719,28086801..28086891,28087538..28087604, 28088300..28088342,28088755..28088926,28089025..28089123, 28089231..28089299,28089589..28089727,28089988..28090189, 28090659..28090768,28090924..28090963,28091739..28091923) /locus_tag="TCM_015468" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transcription factor IIIC, subunit 5, putative isoform 2" /protein_id="EOY23640.1" /db_xref="Phytozome:GSVIVT01038248001" /db_xref="TAIR:AT3G49410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HB40" /translation="MGVIKEGRVSGTLPNDESFAVHFPGYPKTTARAIETLGGTEGIL RARSSQSNKLELHFRPEDPYSRPAFGELRPCNNLLLKISKKKSADGQSAEASSKVREC STSGATDSENPKQPSQAEVQISEQEQTNLCADIVSRVSEAYHFDGMADYQHVLAVHAD AARKRKRNWAEAEEPPFEKGGFMDVDQEDVMMILPPLFSPKDMPENIVLRPSTILSSK KKQEGVVQNTAEVDLEPGLAIDFNIKEIPKKVNWEELITRGSEQWEWQMIVSKLFDER PIWPKESVTERLLDKGLKFSHLMLKRLLLGVAYYFSNGPFLRFWIKKGYDPRKDPDSR IYQRTEFRVPEPLRSYSDANTANKLKHKWEDLCSFRVFPYKCQTFLQLFELDDDYIQQ EIRKPPKLATCDSKTGWFSECVLDCLRLRVAVRFLSVYPKDGAESIRKSYSDEFEKLK RSCIYKDVFNSHQQEIRRTNRELIGDEDKERPKSSDNEEDEIDADDDEELDVYETLNL GGEDDEIPLQPDTYLDMENNSRTYLQELFGSFPSVVGGDAIQAADISDGEYQIYEQFS DNNYSDDDDDDDDNDS" CDS join(28085906..28086040,28086214..28086517, 28086627..28086719,28086801..28086891,28087538..28087604, 28088300..28088342,28088755..28088926,28089025..28089123, 28089231..28089299,28089589..28089727,28089988..28090189, 28090668..28090768,28090924..28090963,28091739..28091923) /locus_tag="TCM_015468" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transcription factor IIIC, subunit 5, putative isoform 3" /protein_id="EOY23641.1" /db_xref="Phytozome:GSVIVT01038248001" /db_xref="TAIR:AT3G49410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HB40" /translation="MGVIKEGRVSGTLPNDESFAVHFPGYPKTTARAIETLGGTEGIL RARSSQSNKLELHFRPEDPYSRPAFGELRPCNNLLLKISKKKSADGQSAEASSKVREC STSGATDSENPKQPSQAEVQISEQEQTNLCADIVSRVSEAYHFDGMADYQHVLAVHAD AARKRKRNWAEAEEPPFEKGGFMDVDQEDVMMILPPLFSPKDMPENIVLRPSTILSSK KKQEGVVQNTAEVDLEPGLAIDFNIKEIPKKVNWEELITRGSEQWEWQMIVSKLFDER PIWPKESVTERLLDKGLKFSHLMLKRLLLGVAYYFSNGPFLRFWIKKGYDPRKDPDSR IYQRTEFRVPEPLRSYSDANTANKLKHKWEDLCSFRVFPYKCQTFLQLFELDDDYIQQ EIRKPPKLATCDSKTGWFSECVLDCLRLRVAVRFLSVYPKDGAESIRKSYSDEFEKLK RSCIYKDVFNSHQQEIRRTNRGDEDKERPKSSDNEEDEIDADDDEELDVYETLNLGGE DDEIPLQPDTYLDMENNSRTYLQELFGSFPSVVGGDAIQAADISDGEYQIYEQFSDNN YSDDDDDDDDNDS" CDS join(28085906..28086040,28086214..28086517, 28086627..28086719,28086801..28086891,28087538..28087604, 28088688..28088926,28089025..28089123,28089231..28089299, 28089589..28089727,28089832..28089877,28089977..28090189, 28090659..28090768,28090924..28090963,28091676..28091923) /locus_tag="TCM_015468" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="General transcription factor 3C polypeptide 5, putative isoform 1" /protein_id="EOY23639.1" /db_xref="Phytozome:GSVIVT01038248001" /db_xref="TAIR:AT3G49410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HB40" /translation="MGVIKEGRVSGTLPNDESFAVHFPGYPKTTARAIETLGGTEGIL RARSSQSNKLELHFRPEDPYSRPAFGELRPCNNLLLKISKKKSADGQSAEASSKVREC STSGATDSENPKQPSQAEVQISEQEQTNLCADIVSRVSEAYHFDGMADYQHVLAVHAD AARKRKRNWAEAEEPPFEKGGFMDVDQEDVMMILPPLFSPKDMPENIVLRPSTILSSK KKQEGVVQNTAENVSNLDAVQILFSIFLLDLAFSQIPKKVNWEELITRGSEQWEWQMI VSKLFDERPIWPKESVTERLLDKGLKFSHLMLKRLLLGVAYYFSNGPFLRFWIKKGYD PRKDPDSRIYQRTEFRVPEPLRSYSDANTANKLKHKWEDLCSFRVFPYKCQTFLQLFE LDDDYIQQEIRKPPKLATCDGGCLWGVVIGVVGDLDTLQSKTGWFSECVLDCLRLRVA VRFLSVYPKDGAESIRKSYSDEFEKLKRSCIYKDVFNSHQQEIRRTNRELIGDEDKER PKSSDNEEDEIDADDDEELDVYETLNLGGEDDEIPLQPDTFFGFVRIWMFFVCLRFPI YCLDLDMENNSRTYLQELFGSFPSVVGGDAIQAADISDGEYQIYEQFSDNNYSDDDDD DDDNDS" mobile_element 28091887..28091916 /note="source:scaffold_1_CACTA_0008 4107 4136" /mobile_element_type="transposon:TIR/CACTA" gene complement(28093023..28096298) /locus_tag="TCM_015469" /note="dbxref CacaoGD:Thecc1EG015469" mRNA complement(join(28093023..28093724,28093870..28093990, 28094225..28094242,28094307..28094317,28094592..28094762, 28095158..28095247,28095814..28096260)) /locus_tag="TCM_015469" /product="Chloroplast outer envelope protein 37 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038250001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021542t2" /inference="similar to AA sequence:Phytozome:POPTR_0007s00440.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc874t3" mRNA complement(join(28093454..28093724,28093870..28093990, 28094225..28094317,28094592..28094762,28095158..28095247, 28095814..28096298)) /locus_tag="TCM_015469" /product="Chloroplast outer envelope protein 37, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038250001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021542t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s04010.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09377t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc874t3; inference alignment:Newbler:10:TSA:cgbaP1_g00417t00001" CDS complement(join(28093590..28093724,28093870..28093990, 28094225..28094242,28094307..28094317,28094592..28094762, 28095158..28095247,28095814..28096227)) /locus_tag="TCM_015469" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021542t2" /codon_start=1 /product="Chloroplast outer envelope protein 37 isoform 1" /protein_id="EOY23642.1" /db_xref="Phytozome:POPTR_0007s00440.1" /db_xref="TAIR:AT2G43950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80565" /translation="MLEPSAQNPNYLIPPLSPLPPSPPPPPPLEPSPPSSTPTKHNHL FSLLSKRPSLRVTSEFDSDSRIFFHKVSCKLFDNLAKLKLSFVNNSKREISDPQLALT SKYLSIHYDPEEQNALIKSSFDVGPMLHFNAAHDVKAQQGEVAMVANLADPSYAVEVS SPVPYVGLPKATIRFPMGEVTLEEREEEEVAKTLSINGILKGPILNGVCAAHYKDEEL KLRYSYKDGAIPSDKLSYWYNLDSDYWSAVYKHTYDKDFKFKAGYDSEVRLGWASLWV GDENGKAKTAPMKMKVQFMLQVPQDDIKSSVLMFRVKKRWDIL" CDS complement(join(28094294..28094317,28094592..28094762, 28095158..28095247,28095814..28096227)) /locus_tag="TCM_015469" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021542t1" /codon_start=1 /product="Chloroplast outer envelope protein 37, putative isoform 2" /protein_id="EOY23643.1" /db_xref="Phytozome:POPTR_0017s04010.1" /db_xref="TAIR:AT2G43950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T2M4" /translation="MLEPSAQNPNYLIPPLSPLPPSPPPPPPLEPSPPSSTPTKHNHL FSLLSKRPSLRVTSEFDSDSRIFFHKVSCKLFDNLAKLKLSFVNNSKREISDPQLALT SKYLSIHYDPEEQNALIKSSFDVGPMLHFNAAHDVKAQQGEVAMVANLADPSYAVEVS SPVPYVGLPKATIRFPMGEVTLEEREEEEVAKTLSINGILKGPILNGVCAAHYKDEEL KLRYSYKDGAMSLS" mobile_element complement(28099186..28099261) /note="source:scaffold_4_CACTA_0482 7647 7722" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28103568..28103649) /note="source:scaffold_2_CACTA_0253 2644 2727" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28103609..28103659 /note="source:scaffold_6_CACTA_0702 12688 12737" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28103706..28104002) /note="source:scaffold_8_CACTA_0867 7829 8138" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28104145..28104177 /note="source:CACAO_M_E9395_F12_scaffold_2 16657 16690" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28105118..28118768 /locus_tag="TCM_015470" /note="dbxref CacaoGD:Thecc1EG015470" mRNA join(28105118..28105222,28105333..28105381, 28105524..28105697,28106024..28106225,28106400..28106617, 28106871..28107867,28107988..28108967,28109437..28109525, 28109680..28110039,28110358..28111597,28111720..28111985, 28112089..28115802,28116309..28116485,28116604..28117608, 28117782..28117884,28118009..28118226,28118305..28118768) /locus_tag="TCM_015470" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30098.m001747" /inference="similar to AA sequence:ricco:30098.m001747" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc336t15; alternateUTRof:Thecc1EG015470t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc336t19; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc345t25" mRNA join(28105118..28105222,28105333..28105381, 28105524..28105697,28106024..28106225,28106400..28106617, 28106871..28107867,28107988..28108967,28109437..28109525, 28109680..28110039,28110358..28111597,28111720..28111985, 28112089..28116342) /locus_tag="TCM_015470" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30098.m001747" /inference="similar to AA sequence:ricco:30098.m001747" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc336t19; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc336t19" CDS join(28105130..28105222,28105333..28105381, 28105524..28105697,28106024..28106225,28106400..28106617, 28106871..28107867,28107988..28108967,28109437..28109525, 28109680..28110039,28110358..28111597,28111720..28111985, 28112089..28114719) /locus_tag="TCM_015470" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30098.m001747" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23644.1" /db_xref="TAIR:AT5G24350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDL9" /translation="MEESVREVLYEARHHASRSFTSNYPPLPLQQSNEADKGGFLSFL SVRGVRQLKERWTGYKNPKKMKKPVSLFISPKGDRVAVAAANQVTILRREDDYQEPCG IFTSSSLVSCTCGAWSESHDILGVIDDADVIYFIKANGEEITKITKRHLKVSSTIIGL IAQDASDVQQSFLCSFTVLTSDGAFHHIEISQEPSASISSTNNSGLALKRQFPQNVFC FDYYPDLSLLVVVGSAVGSSITATGKSGSCYLSLWRKREDLVLEPLASTQFDGLYCEQ KDYAGHLAYPKVLISAHGDYIAALDMNGCLHIFELDKESCSVSNFSFGGRANSQVTDK LLNGCSEILIDIVDFTWWSDHILTLAKRRGFVTMLDILSGLTLIEDEPVYSMPVLERV QQFKGYLFLLETLSSDDRFGLSNSNRRTSHTEQTSEDGSNQSDISRLRWSLISFSERS VPEMYKILIGNSKHQAALDFADRHGLDRDEVLKSQWLCSGQGINDINTFLSNIEDKVF VLSECVDKVGPTEEAVKALLAYGLQLTNQYKFSESNNQECGEIWDFLVARLQLLQFSD RLETFLGINMGRFSMQEYKKFRVMPMNEAAVTLAENGKIGALNLLFKCHPYSLAFFML DILASIPETIPVQTYVQLLPGRSPSASVALREEDWVECDKMVSFINKLPENHEIGTQI RTEPVVKRLLGSFWPSTDELAVWYKHRAREIDSCSGLLDNCLCLVGFACQKGIYELKQ FHEDISYLHQLVYADESDGDLSTSISLVAWGQLSDYEKFRTMLHGCKEENVVESLRNK AIPFMRKRSHSVTLGTQEQVADGHSLENHTMGESFLVRWLKEISLANKLDVCLMVIEE GCKELQSSGFFKDEVEVVDCALQCVYLFTVADRWSTMAAILSKLPHKQDSEICIGNLD QRCKVAEGHIEAGRLLAFYQVPKPMNFFLEAHSDEKGVKQIIRLILSKYVRRQPGRSD NEWANMWRDMLCLQEKAFPFLDLEYMLIEFCRGLLKAGKFSLARSYLKGTSSVALATE KAENLVVQAAREYFFSASSLHSSEIWKAKECLNLCPSSRNVKAEADIIDALTVKLPNL GVTLLPMQFRQIKDPMEIIKMAITSQAGAYLHVDELIEVAKLLGLSSLEEISAVEEAI AREAAVAGDLQLAFDLCLVLAKKGHGLVWDLCAAIARGPSLENMDISSRKQLLGFALS HCDEESIGELLHAWKDLDMQGQCETLMTMTGSNSPNFSVQGSSVISLPGYSIQDIVDL KNSSELVEGFNSVDQEIHFNSIKNTLSLVAKNLPVENGANWELLLQGNGKILTFAAIQ LPWLLELTRKAEHGKNFTSGLIPGKQYVSVRTQAVITILSWLARNGFAPRDDLIASLA KSIIEPPVTEEEDVIGCSFLLNLVDAFSGVEVIEEQLRTRENYQETCSIMNVGMTYSI LHNTGVDCEGPSQRRELLLRKFKERNKPLNSDDINKIDEVHSSFWRDWKLKLEEKKRV ADHSRLLEQIIPGVETARFLSGDVSYVESVVFSLIESLKLEKKHILKDLLKLANTYGL NRAEVILRYLTSILVSEIWTNNDITAEISEIKGEILGYAAETIKTISLIVYPAVDGCN KQRLAYIYSLLSDCYKQLEQSKEPLPMILVDQPHAFAIGLSHYYKVIEEECRRISFVK DLNFKNITGLGGLNLQSFSSEVYAHTDEFSLEALSKMVMTLVSIYSDPVAEGLISWQD VHKHYVLRLLATLKDRVRTEFSTNNPENFQNITSDLEQIYDLSRKHIKLLEPSQALDI MKQYFTEIIPPHGAYENMPDNSTWQDCLIFLLNFWIRLTEEMQEFASSEISVENTRFH PNCLVSCLKVLMRLVMEDSVSPSQGWSTIIGYVNHGLIGDLSAVIFIFCRAMIFSGCG FGAISDVFVEALQHQATTPNAPADTEFQDLPHLYLNVLEPILQDLASGPQEHQKLYLL VSSLSNLEGDLEKLKKVRCAVWERIASFSEDLQLASHVRVYALELMQFITGTTMKGLS SELQLNVHPWVGWDDSLCGSNKTQSTSNEGLPEQTDTSSRFTSTLVALKSSQLMAAIS PGIEITSDDLLNVETAVSCFLKLCEVANAAPHFNVLVAILEEWEGLFVIKTEEVASAV FSDAENIWSNDDWDEGWESFQEVEPSEKEKKEDLLLVHPLHECWIEILRSLVKASQFR DVLKLIDQSTTKSGGVLLDEGGARSLNDSVLGVDCFVALKMMLLLPYKGLQLESLSAL ENKLKQEGTSNMIGSDHEFLMLVLSSGVLSTVINKSSYVTVFSYVCYLVGNFSRQFQE AQLSKLGKKRSNERGNNEGDTLFLFARILFPMFISELVKSEQQVLAGFLVTKFMHTNV SLGLINIAEASLRRYLARQLHVLEHDKFAPEEMGSCETLKYTVSSLRGKLGNSLQSAL SLLPRNESNR" CDS join(28105130..28105222,28105333..28105381, 28105524..28105697,28106024..28106225,28106400..28106617, 28106871..28107867,28107988..28108967,28109437..28109525, 28109680..28110039,28110358..28111597,28111720..28111985, 28112089..28114719) /locus_tag="TCM_015470" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30098.m001747" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23645.1" /db_xref="TAIR:AT5G24350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDL9" /translation="MEESVREVLYEARHHASRSFTSNYPPLPLQQSNEADKGGFLSFL SVRGVRQLKERWTGYKNPKKMKKPVSLFISPKGDRVAVAAANQVTILRREDDYQEPCG IFTSSSLVSCTCGAWSESHDILGVIDDADVIYFIKANGEEITKITKRHLKVSSTIIGL IAQDASDVQQSFLCSFTVLTSDGAFHHIEISQEPSASISSTNNSGLALKRQFPQNVFC FDYYPDLSLLVVVGSAVGSSITATGKSGSCYLSLWRKREDLVLEPLASTQFDGLYCEQ KDYAGHLAYPKVLISAHGDYIAALDMNGCLHIFELDKESCSVSNFSFGGRANSQVTDK LLNGCSEILIDIVDFTWWSDHILTLAKRRGFVTMLDILSGLTLIEDEPVYSMPVLERV QQFKGYLFLLETLSSDDRFGLSNSNRRTSHTEQTSEDGSNQSDISRLRWSLISFSERS VPEMYKILIGNSKHQAALDFADRHGLDRDEVLKSQWLCSGQGINDINTFLSNIEDKVF VLSECVDKVGPTEEAVKALLAYGLQLTNQYKFSESNNQECGEIWDFLVARLQLLQFSD RLETFLGINMGRFSMQEYKKFRVMPMNEAAVTLAENGKIGALNLLFKCHPYSLAFFML DILASIPETIPVQTYVQLLPGRSPSASVALREEDWVECDKMVSFINKLPENHEIGTQI RTEPVVKRLLGSFWPSTDELAVWYKHRAREIDSCSGLLDNCLCLVGFACQKGIYELKQ FHEDISYLHQLVYADESDGDLSTSISLVAWGQLSDYEKFRTMLHGCKEENVVESLRNK AIPFMRKRSHSVTLGTQEQVADGHSLENHTMGESFLVRWLKEISLANKLDVCLMVIEE GCKELQSSGFFKDEVEVVDCALQCVYLFTVADRWSTMAAILSKLPHKQDSEICIGNLD QRCKVAEGHIEAGRLLAFYQVPKPMNFFLEAHSDEKGVKQIIRLILSKYVRRQPGRSD NEWANMWRDMLCLQEKAFPFLDLEYMLIEFCRGLLKAGKFSLARSYLKGTSSVALATE KAENLVVQAAREYFFSASSLHSSEIWKAKECLNLCPSSRNVKAEADIIDALTVKLPNL GVTLLPMQFRQIKDPMEIIKMAITSQAGAYLHVDELIEVAKLLGLSSLEEISAVEEAI AREAAVAGDLQLAFDLCLVLAKKGHGLVWDLCAAIARGPSLENMDISSRKQLLGFALS HCDEESIGELLHAWKDLDMQGQCETLMTMTGSNSPNFSVQGSSVISLPGYSIQDIVDL KNSSELVEGFNSVDQEIHFNSIKNTLSLVAKNLPVENGANWELLLQGNGKILTFAAIQ LPWLLELTRKAEHGKNFTSGLIPGKQYVSVRTQAVITILSWLARNGFAPRDDLIASLA KSIIEPPVTEEEDVIGCSFLLNLVDAFSGVEVIEEQLRTRENYQETCSIMNVGMTYSI LHNTGVDCEGPSQRRELLLRKFKERNKPLNSDDINKIDEVHSSFWRDWKLKLEEKKRV ADHSRLLEQIIPGVETARFLSGDVSYVESVVFSLIESLKLEKKHILKDLLKLANTYGL NRAEVILRYLTSILVSEIWTNNDITAEISEIKGEILGYAAETIKTISLIVYPAVDGCN KQRLAYIYSLLSDCYKQLEQSKEPLPMILVDQPHAFAIGLSHYYKVIEEECRRISFVK DLNFKNITGLGGLNLQSFSSEVYAHTDEFSLEALSKMVMTLVSIYSDPVAEGLISWQD VHKHYVLRLLATLKDRVRTEFSTNNPENFQNITSDLEQIYDLSRKHIKLLEPSQALDI MKQYFTEIIPPHGAYENMPDNSTWQDCLIFLLNFWIRLTEEMQEFASSEISVENTRFH PNCLVSCLKVLMRLVMEDSVSPSQGWSTIIGYVNHGLIGDLSAVIFIFCRAMIFSGCG FGAISDVFVEALQHQATTPNAPADTEFQDLPHLYLNVLEPILQDLASGPQEHQKLYLL VSSLSNLEGDLEKLKKVRCAVWERIASFSEDLQLASHVRVYALELMQFITGTTMKGLS SELQLNVHPWVGWDDSLCGSNKTQSTSNEGLPEQTDTSSRFTSTLVALKSSQLMAAIS PGIEITSDDLLNVETAVSCFLKLCEVANAAPHFNVLVAILEEWEGLFVIKTEEVASAV FSDAENIWSNDDWDEGWESFQEVEPSEKEKKEDLLLVHPLHECWIEILRSLVKASQFR DVLKLIDQSTTKSGGVLLDEGGARSLNDSVLGVDCFVALKMMLLLPYKGLQLESLSAL ENKLKQEGTSNMIGSDHEFLMLVLSSGVLSTVINKSSYVTVFSYVCYLVGNFSRQFQE AQLSKLGKKRSNERGNNEGDTLFLFARILFPMFISELVKSEQQVLAGFLVTKFMHTNV SLGLINIAEASLRRYLARQLHVLEHDKFAPEEMGSCETLKYTVSSLRGKLGNSLQSAL SLLPRNESNR" mRNA join(28107311..28107867,28107988..28108967, 28109437..28109525,28109680..28110039,28110358..28111597, 28111720..28111985,28112089..28115802,28116309..28116485, 28116917..28117610) /locus_tag="TCM_015470" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30098.m001747" /inference="similar to AA sequence:Phytozome:POPTR_0012s02690.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc305t26; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc345t25; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc336t19" CDS join(28107494..28107867,28107988..28108967, 28109437..28109525,28109680..28110039,28110358..28111597, 28111720..28111985,28112089..28114719) /locus_tag="TCM_015470" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY23646.1" /db_xref="Phytozome:POPTR_0012s02690.1" /db_xref="TAIR:AT5G24350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDL9" /translation="MYKILIGNSKHQAALDFADRHGLDRDEVLKSQWLCSGQGINDIN TFLSNIEDKVFVLSECVDKVGPTEEAVKALLAYGLQLTNQYKFSESNNQECGEIWDFL VARLQLLQFSDRLETFLGINMGRFSMQEYKKFRVMPMNEAAVTLAENGKIGALNLLFK CHPYSLAFFMLDILASIPETIPVQTYVQLLPGRSPSASVALREEDWVECDKMVSFINK LPENHEIGTQIRTEPVVKRLLGSFWPSTDELAVWYKHRAREIDSCSGLLDNCLCLVGF ACQKGIYELKQFHEDISYLHQLVYADESDGDLSTSISLVAWGQLSDYEKFRTMLHGCK EENVVESLRNKAIPFMRKRSHSVTLGTQEQVADGHSLENHTMGESFLVRWLKEISLAN KLDVCLMVIEEGCKELQSSGFFKDEVEVVDCALQCVYLFTVADRWSTMAAILSKLPHK QDSEICIGNLDQRCKVAEGHIEAGRLLAFYQVPKPMNFFLEAHSDEKGVKQIIRLILS KYVRRQPGRSDNEWANMWRDMLCLQEKAFPFLDLEYMLIEFCRGLLKAGKFSLARSYL KGTSSVALATEKAENLVVQAAREYFFSASSLHSSEIWKAKECLNLCPSSRNVKAEADI IDALTVKLPNLGVTLLPMQFRQIKDPMEIIKMAITSQAGAYLHVDELIEVAKLLGLSS LEEISAVEEAIAREAAVAGDLQLAFDLCLVLAKKGHGLVWDLCAAIARGPSLENMDIS SRKQLLGFALSHCDEESIGELLHAWKDLDMQGQCETLMTMTGSNSPNFSVQGSSVISL PGYSIQDIVDLKNSSELVEGFNSVDQEIHFNSIKNTLSLVAKNLPVENGANWELLLQG NGKILTFAAIQLPWLLELTRKAEHGKNFTSGLIPGKQYVSVRTQAVITILSWLARNGF APRDDLIASLAKSIIEPPVTEEEDVIGCSFLLNLVDAFSGVEVIEEQLRTRENYQETC SIMNVGMTYSILHNTGVDCEGPSQRRELLLRKFKERNKPLNSDDINKIDEVHSSFWRD WKLKLEEKKRVADHSRLLEQIIPGVETARFLSGDVSYVESVVFSLIESLKLEKKHILK DLLKLANTYGLNRAEVILRYLTSILVSEIWTNNDITAEISEIKGEILGYAAETIKTIS LIVYPAVDGCNKQRLAYIYSLLSDCYKQLEQSKEPLPMILVDQPHAFAIGLSHYYKVI EEECRRISFVKDLNFKNITGLGGLNLQSFSSEVYAHTDEFSLEALSKMVMTLVSIYSD PVAEGLISWQDVHKHYVLRLLATLKDRVRTEFSTNNPENFQNITSDLEQIYDLSRKHI KLLEPSQALDIMKQYFTEIIPPHGAYENMPDNSTWQDCLIFLLNFWIRLTEEMQEFAS SEISVENTRFHPNCLVSCLKVLMRLVMEDSVSPSQGWSTIIGYVNHGLIGDLSAVIFI FCRAMIFSGCGFGAISDVFVEALQHQATTPNAPADTEFQDLPHLYLNVLEPILQDLAS GPQEHQKLYLLVSSLSNLEGDLEKLKKVRCAVWERIASFSEDLQLASHVRVYALELMQ FITGTTMKGLSSELQLNVHPWVGWDDSLCGSNKTQSTSNEGLPEQTDTSSRFTSTLVA LKSSQLMAAISPGIEITSDDLLNVETAVSCFLKLCEVANAAPHFNVLVAILEEWEGLF VIKTEEVASAVFSDAENIWSNDDWDEGWESFQEVEPSEKEKKEDLLLVHPLHECWIEI LRSLVKASQFRDVLKLIDQSTTKSGGVLLDEGGARSLNDSVLGVDCFVALKMMLLLPY KGLQLESLSALENKLKQEGTSNMIGSDHEFLMLVLSSGVLSTVINKSSYVTVFSYVCY LVGNFSRQFQEAQLSKLGKKRSNERGNNEGDTLFLFARILFPMFISELVKSEQQVLAG FLVTKFMHTNVSLGLINIAEASLRRYLARQLHVLEHDKFAPEEMGSCETLKYTVSSLR GKLGNSLQSALSLLPRNESNR" gene 28115371..28117042 /locus_tag="TCM_015471" /note="dbxref CacaoGD:Thecc1EG015471" mRNA join(28115371..28115802,28116320..28116485, 28116604..28117042) /locus_tag="TCM_015471" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038604001" /inference="similar to AA sequence:Phytozome:GSVIVT01038604001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01558t00001" CDS join(28115724..28115802,28116320..28116485, 28116604..28116856) /locus_tag="TCM_015471" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23647.1" /db_xref="Phytozome:GSVIVT01038604001" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CV91" /translation="MERLPGDICLKIFCFLDHQNLATAQRVCRKWKVLASDNLLWSEL FGQRWGIDQAAFYAPNPIDSRSWKDVYETQDRCDRVGIGLKIIREGGDYFLVHQGEIQ RHLGSRRKRKGVKDGPSSSKTELRVEEAMKVEEPSRGILDKILFFLGDLEAASADAKR GRVLL" gene complement(28117098..28121006) /locus_tag="TCM_015472" /note="dbxref CacaoGD:Thecc1EG015472" mRNA complement(join(28117098..28117610,28117782..28117884, 28118009..28118224,28118305..28118570,28118743..28119013, 28119441..28119609,28119706..28119850,28120737..28121006)) /locus_tag="TCM_015472" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30098.m001746" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015666t1" /inference="similar to AA sequence:ricco:30098.m001746" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05476t00001" CDS complement(join(28117549..28117610,28117782..28117884, 28118009..28118224,28118305..28118570,28118743..28119013, 28119441..28119609,28119706..28119850,28120737..28120887)) /locus_tag="TCM_015472" /note="dbxref ricco:30098.m001746; paralog of Thecc1EG015666t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY23648.1" /db_xref="TAIR:AT4G27720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGV0" /translation="MELFFFLVFGALGAVVAALELSKTSKDRINTSPAFNSFKNNYLV VYSLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRR RACVTYCITYILSCITKHSPQYKVLMIGRVLGGIATSLLFSAFESWLVAEHNKRGFEQ QWLSLTFSKAIFLGNGLVAILSGLFGNLLVDSLSLGPVAPFDAAACFLAIGMAIILSS WTENFGDTSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP NDEEIPHGFIFATFMLASMLGSSLASRLMAHSSPRVESYMQIVFAISSLSLLLPIITN FLVAPSKVKGGSISFSGCIQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF RIPLNLFVCIVLYNVDAFPITVMFGMCSIFLFVASILQRRLMAISDKPKVENWTAMKE RDPEAEPLND" gene 28122449..28124884 /locus_tag="TCM_015473" /note="dbxref CacaoGD:Thecc1EG015473" mRNA join(28122449..28122765,28122888..28122934, 28123363..28123455,28123601..28123739,28123833..28123935, 28124457..28124744) /locus_tag="TCM_015473" /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038606001" /inference="similar to AA sequence:Phytozome:GSVIVT01038606001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11914t00001; inference alignment:Newbler:10:TSA:cgbaB_g11914t00001" CDS join(28122546..28122765,28122888..28122934, 28123363..28123455,28123601..28123739,28123833..28123935, 28124457..28124571) /locus_tag="TCM_015473" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 1" /protein_id="EOY23649.1" /db_xref="Phytozome:GSVIVT01038606001" /db_xref="TAIR:AT4G27700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q69NF7" /translation="MAALTSVTPHSTSSSSLYSNFRSPQLSISSIIAPDCSCFLTATS GKALRQRLTYQDRRGLIIRSAATKPAKSPAEEDWKIKREVLLEKKVRSVDAKEAFRLQ KENNFMILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE NPEFMQSVESKFDKDAKIIVACTSGGTMKPTQNLPEGQQSRSLIAAYLLVLNGYKNVF HLEGGLSTWFKEGLPSESED" mRNA join(<28122736..28122765,28122881..28122934, 28123363..28123455,28123601..28123739,28123833..28123935, 28124457..28124884) /locus_tag="TCM_015473" /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038606001" /inference="similar to AA sequence:ricco:55585.m000022" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc678t4_C2; inference alignment:Newbler:10:TSA:cgbaB_g11914t00001" CDS join(<28122736..28122765,28122881..28122934, 28123363..28123455,28123601..28123739,28123833..28123935, 28124457..28124571) /locus_tag="TCM_015473" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:55585.m000022" /codon_start=1 /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 2" /protein_id="EOY23650.1" /db_xref="TAIR:AT4G27700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q69NF7" /translation="VQQQSLQNHQGLAEEDWKIKREVLLEKKVRSVDAKEAFRLQKEN NFMILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE FMQSVESKFDKDAKIIVACTSGGTMKPTQNLPEGQQSRSLIAAYLLVLNGYKNVFHLE GGLSTWFKEGLPSESED" gene complement(28124502..28127866) /locus_tag="TCM_015474" /note="dbxref CacaoGD:Thecc1EG015474" mRNA complement(join(28124502..28124523,28125195..28125673, 28125888..28125926,28126145..28126264,28126417..28126608, 28126812..28126910,28127048..28127194,28127279..28127866)) /locus_tag="TCM_015474" /product="Metal-dependent protein hydrolase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019639001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015663t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s01030.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b014950t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8024t2" mRNA complement(join(28125170..28125673,28125855..28125926, 28126145..28126264,28126417..28126608,28126812..28126910, 28127048..28127194,28127279..28127790)) /locus_tag="TCM_015474" /product="Metal-dependent protein hydrolase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019639001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015663t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s01030.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8024t2" CDS complement(join(28125449..28125673,28125888..28125926, 28126145..28126264,28126417..28126608,28126812..28126910, 28127048..28127194,28127279..28127560)) /locus_tag="TCM_015474" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015663t1" /codon_start=1 /product="Metal-dependent protein hydrolase isoform 2" /protein_id="EOY23652.1" /db_xref="Phytozome:POPTR_0015s01030.1" /db_xref="TAIR:AT3G49320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K000" /translation="MYAVRGMRHKLLIFQSQCSRQALSARNDGILLKVTAKSHSYIYR ACGFSTTTARPKRVGTHNGSFHCDEALACFMIRLTNKFSNAQIVRTRDSQVLENLDAV VDVGGVYDPTRDRYDHHQRGFEQVFGHGFTTKLSSAGLVYKHYGAEIIAKVLQLDVQH PNVSRLFLAVYKNFVEAVDAIGNGISQYDTDQPPRYVNSTGLSFRVGRLNLDWVDPDQ SSEKENEAFQHAMTLTGSEFLENIHFLAKSCLPARSIVMECLSARNDIDSSREIMVLT RPCPWKLHIFELEEELKDDRSENWRVQAIAVSPGKFESRKPLPLPWRGLEGNKLSEVA GIPGCVFVHMSGFIAANKSFGGALAMARASLKV" CDS complement(join(28125449..28125673,28125855..28125926, 28126145..28126264,28126417..28126608,28126812..28126910, 28127048..28127194,28127279..28127560)) /locus_tag="TCM_015474" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015663t1" /codon_start=1 /product="Metal-dependent protein hydrolase isoform 1" /protein_id="EOY23651.1" /db_xref="Phytozome:POPTR_0015s01030.1" /db_xref="TAIR:AT3G49320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K000" /translation="MYAVRGMRHKLLIFQSQCSRQALSARNDGILLKVTAKSHSYIYR ACGFSTTTARPKRVGTHNGSFHCDEALACFMIRLTNKFSNAQIVRTRDSQVLENLDAV VDVGGVYDPTRDRYDHHQRGFEQVFGHGFTTKLSSAGLVYKHYGAEIIAKVLQLDVQH PNVSRLFLAVYKNFVEAVDAIGNGISQYDTDQPPRYVNSTGLSFRVGRLNLDWVDPDQ SSEKENEAFQHAMTLTGSEFLENIHFLAKSCLPARSIVMECLSARNDIDSSREIMVLT RPCPWKLHIFELEEELKVETSIKYVIYQDDRSENWRVQAIAVSPGKFESRKPLPLPWR GLEGNKLSEVAGIPGCVFVHMSGFIAANKSFGGALAMARASLKV" gene complement(28127828..28131767) /locus_tag="TCM_015475" /note="dbxref CacaoGD:Thecc1EG015475" mRNA complement(join(28127828..28128577,28128803..28128978, 28129164..28129219,28129380..28129424,28129814..28129880, 28130199..28130310,28130598..28130642,28130768..28130840, 28130950..28131009,28131166..28131240,28131355..28131375)) /locus_tag="TCM_015475" /product="Vacuolar protein sorting 26A isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g46990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041024t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s08120.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc422t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc620t3; inference alignment:Newbler:10:TSA:cgbaP2_g06024t00001" mRNA complement(join(28127979..28128577,28128803..28128978, 28129164..28129219,28129380..28129424,28129814..28129880, 28130199..28130310,28130598..28130642,28130768..28130840, 28130950..28131024,28131166..28131240,28131355..28131586)) /locus_tag="TCM_015475" /product="Vacuolar protein sorting 26A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g46990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041024t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s08120.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06024t00001; inference alignment:Newbler:10:TSA:cgbaP2_g06024t00001" CDS complement(join(28128402..28128577,28128803..28128978, 28129164..28129219,28129380..28129424,28129814..28129880, 28130199..28130310,28130598..28130642,28130768..28130840, 28130950..28131009,28131166..28131240,28131355..28131357)) /locus_tag="TCM_015475" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG041024t2" /codon_start=1 /product="Vacuolar protein sorting 26A isoform 4" /protein_id="EOY23656.1" /db_xref="Phytozome:POPTR_0006s08120.2" /db_xref="TAIR:AT5G53530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T091" /translation="MNFLIGAFKPACNISITFSDGKSRKQENGQTVMVPLFQSQENIA GKISIEPFQGKKIEHNGVKVELLGQIEMYFDRGNFYDFTSLVRELDVPGDIYERKTYP FEFSTVEMPYETYNGVNVRLRYVLKVTVSRNYGGSIVEYQDFMVRNYSPAPSINNSIK MEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANT HVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDE EDRRYFKQQEITIYRLQDS" CDS complement(join(28128402..28128577,28128803..28128978, 28129164..28129219,28129380..28129424,28129814..28129880, 28130199..28130310,28130598..28130642,28130768..28130840, 28130950..28131024,28131166..28131240,28131355..28131357)) /locus_tag="TCM_015475" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041024t2" /codon_start=1 /product="Vacuolar protein sorting 26A isoform 1" /protein_id="EOY23653.1" /db_xref="Phytozome:POPTR_0006s08120.2" /db_xref="TAIR:AT5G53530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T091" /translation="MNFLIGAFKPACNISITFSDGKSRKQVPLKKENGQTVMVPLFQS QENIAGKISIEPFQGKKIEHNGVKVELLGQIEMYFDRGNFYDFTSLVRELDVPGDIYE RKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRNYGGSIVEYQDFMVRNYSPAPSI NNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTG SGANTHVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNL VLVDEEDRRYFKQQEITIYRLQDS" mRNA complement(join(28128531..28128633,28128803..28128978, 28129164..28129219,28129380..28129424,28129814..28129880, 28130199..28130310,28130598..28130642,28130768..28130840, 28130950..28131024,28131166..28131240,28131355..28131767)) /locus_tag="TCM_015475" /product="Vacuolar protein sorting 26A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g46990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041024t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s08120.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc638t7; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc620t3; inference alignment:Newbler:10:TSA:cgbaP2_g06024t00001" mRNA complement(join(28128550..28128611,28128803..28128978, 28129164..28129219,28129380..28129424,28129814..28129880, 28130199..28130310,28130598..28130642,28130768..28130840, 28130950..28131024,28131166..28131240,28131355..28131767)) /locus_tag="TCM_015475" /product="Vacuolar protein sorting 26A isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g46990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041024t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s08120.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc620t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc620t3; inference alignment:Newbler:10:TSA:cgbaP2_g06024t00001" CDS complement(join(28128580..28128611,28128803..28128978, 28129164..28129219,28129380..28129424,28129814..28129880, 28130199..28130310,28130598..28130642,28130768..28130840, 28130950..28131024,28131166..28131240,28131355..28131357)) /locus_tag="TCM_015475" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041024t2" /codon_start=1 /product="Vacuolar protein sorting 26A isoform 3" /protein_id="EOY23655.1" /db_xref="Phytozome:POPTR_0006s08120.2" /db_xref="TAIR:AT5G53530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T091" /translation="MNFLIGAFKPACNISITFSDGKSRKQVPLKKENGQTVMVPLFQS QENIAGKISIEPFQGKKIEHNGVKVELLGQIEMYFDRGNFYDFTSLVRELDVPGDIYE RKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRNYGGSIVEYQDFMVRNYSPAPSI NNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTG SGANTHVETETLAKFELMDGAPVRAWCSQSCAWY" CDS complement(join(28128623..28128633,28128803..28128978, 28129164..28129219,28129380..28129424,28129814..28129880, 28130199..28130310,28130598..28130642,28130768..28130840, 28130950..28131024,28131166..28131240,28131355..28131357)) /locus_tag="TCM_015475" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041024t2" /codon_start=1 /product="Vacuolar protein sorting 26A isoform 2" /protein_id="EOY23654.1" /db_xref="Phytozome:POPTR_0006s08120.2" /db_xref="TAIR:AT5G53530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T091" /translation="MNFLIGAFKPACNISITFSDGKSRKQVPLKKENGQTVMVPLFQS QENIAGKISIEPFQGKKIEHNGVKVELLGQIEMYFDRGNFYDFTSLVRELDVPGDIYE RKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRNYGGSIVEYQDFMVRNYSPAPSI NNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTG SGANTHVETETLAKFELMDGAPVRADI" gene complement(28132378..28134483) /locus_tag="TCM_015476" /note="dbxref CacaoGD:Thecc1EG015476" mRNA complement(28132378..28134483) /locus_tag="TCM_015476" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038610001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005088t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s01020.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9435t1" CDS complement(28132725..28134164) /locus_tag="TCM_015476" /note="paralog of Thecc1EG005088t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative" /protein_id="EOY23657.1" /db_xref="Phytozome:POPTR_0015s01020.1" /db_xref="TAIR:AT2G46620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IJ77" /translation="MVNMILILFAILVLFLILRFLSKTSLLHILLKLLRSLGDWFHVY QSYRVPEFNDLFQDNELYHKVSTYLNSLPSLEDSDFTNLFTGSKSNDIVLHLDTNQTI GDTFLGARVTWTVEKSENNRSRVFVLRLRKNDKRRILRPYLQHILSAADDIDQRKKEI KLHMNVENSSGQNGRWRSVPFHHPASFDTLVMDVDLKNRVKADLEMFLKSKQYYHRLG RVWKRSYLLYGASGTGKSSFVAAMARFLSFDVYDVDLSKVSDDSDLKMLLLQTTSRSM IVVEDLDRFLMEKSRNVSLSGILNFMDGIVSCCGEERVLVFTMNSKDQVDQAVLRPGR IDVHIQFPLCDFSAFKSLANSYLGVKEHKLFPHVEEIFQGGASLSPAEIGEIMISNRS SPTRALKSVITALQTTASNAKKVSKRLSDSESVRNSDDTGDQGNLLSRDNSVREFRKL YGLLKMGSRRKEEPLDLGSVDKEGSRHEA" gene complement(28135838..28140206) /locus_tag="TCM_015477" /note="dbxref CacaoGD:Thecc1EG015477" mRNA complement(join(28135838..28136855,28137267..28137562, 28137707..28137865,28138445..28138536,28138609..28138745, 28139710..28140159)) /locus_tag="TCM_015477" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038610001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015660t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400009650" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1317t5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9439t1" mRNA complement(join(28135855..28136855,28137267..28137562, 28137707..28137865,28138445..28138745,28139710..28140206)) /locus_tag="TCM_015477" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038610001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015660t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400009650" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9439t1" CDS complement(join(28136634..28136855,28137267..28137562, 28137707..28137865,28138445..28138536,28138609..28138745, 28139710..28139910)) /locus_tag="TCM_015477" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015660t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY23659.1" /db_xref="Phytozome:PGSC0003DMP400009650" /db_xref="TAIR:AT4G27680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T090" /translation="MGSSSSETKFLQELILYAASAALSCLVLFAGLRHLDPNREASKK ALEQKKEIAKRLGRPLIHTNPYEDVIACDVINPDHIDVEFESIGGLESIKQALYELVI LPLRRPELFAHKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIF IDEVDSFLGQRRNTDHEAMTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAIL RRLPQAFEIGIPDRRERAEILKVILKGEKVEESINFDYIASLCEGYTGSDLLELCKKA AYFPIRDLLDDEKKGKPSGAPRPLSQTDLEKVLSTSRKTGSAANEYSRLSSQLSGWSR QKESDDYQVQAAISELSKLVVSQIVNLQSDSQDA" CDS complement(join(28136634..28136855,28137267..28137562, 28137707..28137865,28138445..28138745,28139710..28139910)) /locus_tag="TCM_015477" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015660t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY23658.1" /db_xref="Phytozome:PGSC0003DMP400009650" /db_xref="TAIR:AT4G27680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T090" /translation="MGSSSSETKFLQELILYAASAALSCLVLFAGLRHLDPNREASKK ALEQKKEIAKRLGRPLIHTNPYEDVIACDVINPDHIDVEFESIGGLESIKQALYELVI LPLRRPELFAHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKW FGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRNTDHEAMTNMKTEFMALWDGFT TDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEILKVILKGEKVEESI NFDYIASLCEGYTGSDLLELCKKAAYFPIRDLLDDEKKGKPSGAPRPLSQTDLEKVLS TSRKTGSAANEYSRLSSQLSGWSRQKESDDYQVQAAISELSKLVVSQIVNLQSDSQDA " mobile_element 28142084..28142864 /note="source:scaffold_2_CACTA_0244 13855 14699" /mobile_element_type="transposon:TIR/CACTA" gene 28142097..28172297 /locus_tag="TCM_015479" /note="dbxref CacaoGD:Thecc1EG015479" mRNA join(28142097..28142108,28157428..28157455, 28170565..28170723,28170871..28170957,28171350..28171452, 28171861..28171927,28172053..28172297) /locus_tag="TCM_015479" /product="Ubiquitin supergroup,Ribosomal protein L40e" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022654t1" /inference="similar to AA sequence:frave:gene12767" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14965t00001" gene 28143153..28148146 /locus_tag="TCM_015480" /note="dbxref CacaoGD:Thecc1EG015480" mRNA join(28143153..28143973,28144073..28144198, 28144312..28144692,28144812..28144984,28145190..28145287, 28145386..28145520,28145614..28145803,28145911..28146025, 28146392..28147874) /locus_tag="TCM_015480" /product="YELLOW STRIPE like 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s03180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015656t2" /inference="similar to AA sequence:Phytozome:Glyma04g41020.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1575t2; alternateUTRof:Thecc1EG015480t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2516t5" mRNA join(28143208..28143760,28143937..28143973, 28144073..28144198,28144293..28144692,28144812..28144984, 28145190..28145287,28145386..28145520,28145614..28145803, 28145911..28146025,28146392..28147278,28147860..28148146) /locus_tag="TCM_015480" /product="YELLOW STRIPE like 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s03180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015656t2" /inference="similar to AA sequence:Phytozome:Glyma04g41020.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2516t5" mRNA join(28143944..28143984,28144073..28144198, 28144293..28144692,28144812..28144984,28145190..28145287, 28145386..28145520,28145614..28145803,28145911..28146025, 28146392..28147874) /locus_tag="TCM_015480" /product="YELLOW STRIPE like 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s03180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015656t2" /inference="similar to AA sequence:Phytozome:Glyma04g41020.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1575t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2516t5" CDS join(28144326..28144692,28144812..28144984, 28145190..28145287,28145386..28145520,28145614..28145803, 28145911..28146025,28146392..28147278,28147860..28147901) /locus_tag="TCM_015480" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015656t2" /codon_start=1 /product="YELLOW STRIPE like 3 isoform 1" /protein_id="EOY23661.1" /db_xref="Phytozome:Glyma04g41020.1" /db_xref="TAIR:AT5G53550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2EF88" /translation="MGTTNMEEMKEIERVEREDLEEKNTETEDLKRIAPWMRQITIRG LIASFLIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVLVRSWTKLLQKAGFVATPFT RQENTIIQTCAVACYSIAVGGGFGSYLLGLNRKTYEQAGVDSAGNNPGSIKEPGIGWM IGFLFVSSFVGLLALVPLRKIMIIDYKLTYPSGTATAVLINGFHTPKGDKIAKKQVHG FLKFFSLSFLWAFFQWFYAGGDRCGFAQFPTFGLKAWKNSFYFDFSMTYIGAGMICSH LVNLSLLLGAVLSWGVMWPLIGGLKGEWFTATLPESSMKSLNGYKVFISIALILGDGL YNFLKILFFTARSIHVRVKNNNSKTFSDSQKQHVDVLQRNELFVRESIPMWVACLGYT LFSIISIIVIPLMFPELKWYYVVVAYILAPSLSFCNAYGAGLTDINMAYNYGKVALFV LAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLLSQAIGTAI GCVVAPLTFFLFYKAFDVGNPDSEYKAPYALIYRNMAILGVQGFSALPQHCLQLCYGF FSFAIAANLLRDFTPKNIGKWAPLPMAMAVPFLVGAYFAIDMCVGSLVVFAWHKLNGK KAGLMIPAVASGLICGDGLWLLPSSILALFKSQSVNNSYIARNC" CDS join(28144326..28144692,28144812..28144984, 28145190..28145287,28145386..28145520,28145614..28145803, 28145911..28146025,28146392..28147320) /locus_tag="TCM_015480" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015656t2" /codon_start=1 /product="YELLOW STRIPE like 3 isoform 2" /protein_id="EOY23662.1" /db_xref="Phytozome:Glyma04g41020.1" /db_xref="TAIR:AT5G53550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2EF88" /translation="MGTTNMEEMKEIERVEREDLEEKNTETEDLKRIAPWMRQITIRG LIASFLIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVLVRSWTKLLQKAGFVATPFT RQENTIIQTCAVACYSIAVGGGFGSYLLGLNRKTYEQAGVDSAGNNPGSIKEPGIGWM IGFLFVSSFVGLLALVPLRKIMIIDYKLTYPSGTATAVLINGFHTPKGDKIAKKQVHG FLKFFSLSFLWAFFQWFYAGGDRCGFAQFPTFGLKAWKNSFYFDFSMTYIGAGMICSH LVNLSLLLGAVLSWGVMWPLIGGLKGEWFTATLPESSMKSLNGYKVFISIALILGDGL YNFLKILFFTARSIHVRVKNNNSKTFSDSQKQHVDVLQRNELFVRESIPMWVACLGYT LFSIISIIVIPLMFPELKWYYVVVAYILAPSLSFCNAYGAGLTDINMAYNYGKVALFV LAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLLSQAIGTAI GCVVAPLTFFLFYKAFDVGNPDSEYKAPYALIYRNMAILGVQGFSALPQHCLQLCYGF FSFAIAANLLRDFTPKNIGKWAPLPMAMAVPFLVGAYFAIDMCVGSLVVFAWHKLNGK KAGLMIPAVASGLICGDGLWLLPSSILALFKVRPPICMNFLATT" CDS join(28144326..28144692,28144812..28144984, 28145190..28145287,28145386..28145520,28145614..28145803, 28145911..28146025,28146392..28147320) /locus_tag="TCM_015480" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015656t2" /codon_start=1 /product="YELLOW STRIPE like 3 isoform 2" /protein_id="EOY23663.1" /db_xref="Phytozome:Glyma04g41020.1" /db_xref="TAIR:AT5G53550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2EF88" /translation="MGTTNMEEMKEIERVEREDLEEKNTETEDLKRIAPWMRQITIRG LIASFLIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVLVRSWTKLLQKAGFVATPFT RQENTIIQTCAVACYSIAVGGGFGSYLLGLNRKTYEQAGVDSAGNNPGSIKEPGIGWM IGFLFVSSFVGLLALVPLRKIMIIDYKLTYPSGTATAVLINGFHTPKGDKIAKKQVHG FLKFFSLSFLWAFFQWFYAGGDRCGFAQFPTFGLKAWKNSFYFDFSMTYIGAGMICSH LVNLSLLLGAVLSWGVMWPLIGGLKGEWFTATLPESSMKSLNGYKVFISIALILGDGL YNFLKILFFTARSIHVRVKNNNSKTFSDSQKQHVDVLQRNELFVRESIPMWVACLGYT LFSIISIIVIPLMFPELKWYYVVVAYILAPSLSFCNAYGAGLTDINMAYNYGKVALFV LAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLLSQAIGTAI GCVVAPLTFFLFYKAFDVGNPDSEYKAPYALIYRNMAILGVQGFSALPQHCLQLCYGF FSFAIAANLLRDFTPKNIGKWAPLPMAMAVPFLVGAYFAIDMCVGSLVVFAWHKLNGK KAGLMIPAVASGLICGDGLWLLPSSILALFKVRPPICMNFLATT" gene 28150309..28153446 /locus_tag="TCM_015481" /note="dbxref CacaoGD:Thecc1EG015481" mRNA join(28150309..28150402,28150653..28150748, 28152675..28152741,28152834..28153427) /locus_tag="TCM_015481" /product="Cytochrome B5, n2,ATCB5-E,CB5-E isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009644" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002942t1" /inference="similar to AA sequence:Phytozome:Glyma06g13840.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00251t00002; alternateUTRof:Thecc1EG015481t1; inference alignment:Newbler:10:TSA:cgbaL_g01698t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc28t9" mRNA join(<28150313..28150402,28150672..28150748, 28152675..28152741,28152834..28153446) /locus_tag="TCM_015481" /product="Cytochrome B5, n2,ATCB5-E,CB5-E isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009644" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002942t1" /inference="similar to AA sequence:Phytozome:Glyma06g13840.3" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00277t00004; inference alignment:Newbler:10:TSA:cgbaL_g01698t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc28t9" CDS join(<28150315..28150402,28150672..28150748, 28152675..28152741,28152834..28153084) /locus_tag="TCM_015481" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG002942t1" /codon_start=1 /product="Cytochrome B5, n2,ATCB5-E,CB5-E isoform 3" /protein_id="EOY23666.1" /db_xref="Phytozome:Glyma06g13840.3" /db_xref="TAIR:AT5G53560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42342" /translation="AGIVFLTITRTDFHRRANAESFFRISQKPHPKMHTFEEVSKHNK TKDCWLIISGKVYDVTPFMDDHPGGDEVLLSATGKDATNDFEDVGHSDSARDMMKKYY IGDIDSKTVPAKRTYIPPLQTPYNPDKTPEFIIKILQFLVPLLILGLAIAVRNFTKKE " mRNA join(28150374..28150402,28150499..28150556, 28150653..28150748,28152675..28152741,28152834..28153434) /locus_tag="TCM_015481" /product="Cytochrome B5, n2,ATCB5-E,CB5-E isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009644" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002942t1" /inference="similar to AA sequence:Phytozome:Glyma06g13840.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01698t00002" CDS join(28150662..28150748,28152675..28152741, 28152834..28153084) /locus_tag="TCM_015481" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002942t1" /codon_start=1 /product="Cytochrome B5, n2,ATCB5-E,CB5-E isoform 1" /protein_id="EOY23664.1" /db_xref="Phytozome:Glyma06g13840.3" /db_xref="TAIR:AT5G53560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42342" /translation="MATDPKMHTFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGD EVLLSATGKDATNDFEDVGHSDSARDMMKKYYIGDIDSKTVPAKRTYIPPLQTPYNPD KTPEFIIKILQFLVPLLILGLAIAVRNFTKKE" CDS join(28150662..28150748,28152675..28152741, 28152834..28153084) /locus_tag="TCM_015481" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002942t1" /codon_start=1 /product="Cytochrome B5, n2,ATCB5-E,CB5-E isoform 1" /protein_id="EOY23665.1" /db_xref="Phytozome:Glyma06g13840.3" /db_xref="TAIR:AT5G53560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42342" /translation="MATDPKMHTFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGD EVLLSATGKDATNDFEDVGHSDSARDMMKKYYIGDIDSKTVPAKRTYIPPLQTPYNPD KTPEFIIKILQFLVPLLILGLAIAVRNFTKKE" mobile_element 28151207..28152120 /note="source:CACAO_Again_on_S_E139_scaffold_4 1 985" /mobile_element_type="transposon:TIR/hAT" gene complement(28152731..28158252) /locus_tag="TCM_015482" /note="dbxref CacaoGD:Thecc1EG015482" mRNA complement(join(28152731..28155424,28155550..28155603, 28155825..28155874,28155965..28156100,28157343..28158252)) /locus_tag="TCM_015482" /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30213.m000672" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015653t1" /inference="similar to AA sequence:Phytozome:Glyma06g13850.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:PASA:2:TSA:puevd3b014959t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8299t1" mRNA complement(join(28153437..28155424,28155550..28155603, 28155825..28155874,28155965..28156100,28157343..28157486, 28157612..28158186)) /locus_tag="TCM_015482" /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30213.m000672" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015653t1" /inference="similar to AA sequence:Phytozome:Glyma06g13850.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9442t1" CDS complement(join(28154179..28155424,28155550..28155603, 28155825..28155874,28155965..28156100,28157343..28157486, 28157612..28157778)) /locus_tag="TCM_015482" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015653t1" /codon_start=1 /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 1" /protein_id="EOY23667.1" /db_xref="Phytozome:Glyma06g13850.1" /db_xref="TAIR:AT3G49350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SG14" /translation="MVPSGNNIPTGIHHFGGGGGGGFWSAVATPPSKTAVAVTALAGL VLCAAIFYNSSRRSQTSSSSPNSPSSSSSSSSSSSSWIHLRSVLFVVTSSSPASCSSS DRGRLKSPWSRRRKKHALSPQQWKSLFTSDGRLRDGGVKFLKKVRSRGVDPSIRAEVW PFLLGVYDLNRAKEERDAVKTQKRKEYEKLRRECRRLLKHNSVSFKLTEIGGTCQNGD GGSLIQETDTSGSEDVVSARESLSSEERSPDAEYSDEPSSTLLEGDDGSRRITNADVS ALNSESSDSDSSEDPEVIQESPSSEGREENDPDVSSKRNVSPSSTEGLSKLRATEDFS TWQRIIRLDAVRANAEWMPHSASQSAVSEGRARRSAEAVGLKDYDHLDPCRIFHAARL VAILEAYALYDPEIGYCQGMSDLLSPIISVIPEDYEAFWCFVGFMKKARHNFRLDEVG IRRQLNIVSKIIKCKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELTFEQTICLWEVM WADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLQRRKLIIEKYSSMDEILRE CNSMSGQLDVWKLLDDAHDLVVTLHDKIESSF" CDS complement(join(28154179..28155424,28155550..28155603, 28155825..28155874,28155965..28156100,28157343..28157500)) /locus_tag="TCM_015482" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015653t1" /codon_start=1 /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 2" /protein_id="EOY23668.1" /db_xref="Phytozome:Glyma06g13850.1" /db_xref="TAIR:AT3G49350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SG14" /translation="MRALRRSQTSSSSPNSPSSSSSSSSSSSSWIHLRSVLFVVTSSS PASCSSSDRGRLKSPWSRRRKKHALSPQQWKSLFTSDGRLRDGGVKFLKKVRSRGVDP SIRAEVWPFLLGVYDLNRAKEERDAVKTQKRKEYEKLRRECRRLLKHNSVSFKLTEIG GTCQNGDGGSLIQETDTSGSEDVVSARESLSSEERSPDAEYSDEPSSTLLEGDDGSRR ITNADVSALNSESSDSDSSEDPEVIQESPSSEGREENDPDVSSKRNVSPSSTEGLSKL RATEDFSTWQRIIRLDAVRANAEWMPHSASQSAVSEGRARRSAEAVGLKDYDHLDPCR IFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIISVIPEDYEAFWCFVGFMKKARHN FRLDEVGIRRQLNIVSKIIKCKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELTFEQT ICLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLQRRKLIIEKYSS MDEILRECNSMSGQLDVWKLLDDAHDLVVTLHDKIESSF" CDS join(28157443..28157455,28170565..28170723, 28170871..28170957,28171350..28171452,28171861..28171927, 28172053..28172079) /locus_tag="TCM_015479" /note="dbxref frave:gene12767; paralog of Thecc1EG022654t1" /codon_start=1 /product="Ubiquitin supergroup,Ribosomal protein L40e" /protein_id="EOY23660.1" /db_xref="TAIR:AT3G52590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62987" /translation="MMRVKEERERERERDRSRSRVRKMQIFVKTLTGKTITLEVESSD TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIE PSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK" gene complement(28162420..28164688) /locus_tag="TCM_015483" /note="dbxref CacaoGD:Thecc1EG015483" mRNA complement(join(28162420..28163299,28163868..28164003, 28164208..28164688)) /locus_tag="TCM_015483" /product="NagB/RpiA/CoA transferase-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s00960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011503t3" /inference="similar to AA sequence:Phytozome:POPTR_0012s03150.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09494t00001" CDS complement(join(28162835..28163299,28163868..28164003, 28164208..28164575)) /locus_tag="TCM_015483" /note="paralog of Thecc1EG011503t3" /codon_start=1 /product="NagB/RpiA/CoA transferase-like superfamily protein" /protein_id="EOY23669.1" /db_xref="Phytozome:POPTR_0012s03150.1" /db_xref="TAIR:AT5G24400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84WW2" /translation="MASSPLQLSTPLRTLFLSPSLGRLPRIPFQASLFWQRVTPKTLV FSTGIRGVSGPGRFCSRAKASMAGTTTEKGKGKVEVFASEEDLSVSLAKYTADLADKL SKEKSTFTVVLSGGSLIKSLRKLVEPPYIDSVDWSAWQVFWVDERVVPKDHDDSNYKL AFDGFLSKVPILPGNVYSINDALSAEGAADDYETCLKHLVNSGVISVSAATGLPKFDL MLLGMGPDGHVASLFPGHPLVRENEKWVTFIKDSPKPPPERITFTFPVINSSAHIALV VCGAGKAGPVHAALGNGRNSEPLPVQMVSPEGEMVWFLDKDAASKL" mobile_element complement(28164908..28164944) /note="source:INTACT79_F137_scaffold_5-int 4681 4716" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28164920..28164954) /note="source:CACAO_M_S_E84244_F33_scaffold_6 7657 7692" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28165075..28166577 /locus_tag="TCM_015484" /note="dbxref CacaoGD:Thecc1EG015484" mRNA join(28165075..28165525,28165604..28166577) /locus_tag="TCM_015484" /product="NB-ARC domain-containing disease resistance-like protein" /inference="alignment:exonerate-protein:2:frave:gene11980" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020318t1" /inference="similar to AA sequence:ricco:30063.m001411" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS join(28165217..28165525,28165604..28166260) /locus_tag="TCM_015484" /note="dbxref ricco:30063.m001411; paralog of Thecc1EG020318t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance-like protein" /protein_id="EOY23670.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HHY9" /translation="MLNSALLHIKAVLNHAEEMQFNDPNVRAWLEEVKDVTYDAEDIT DAIDTDVLESRSSTSKVNIHLDSGNASDSVREGIDFKMKGIAAAINPFKQRLESRMNT TIIGRTPTTPMLDESCVFGRDSDKEKTMKLPKSVLGTGDKVHVIPIVGLEGIGKTTLA RIVYGEKMMKDRFDLKAWACAADEFDAKRITRTLVESITRKNCKEFGFTSREADKFVK GKEFLVVLDDVWNEGYENWDELKILFAKGAAGTTIMVTTRSEKVASIVGTLPIHCLEE LSKEDCMSLFEQIVFPNGNSDAEKRVSKCRGLPLAVKALGGLLRS" gene 28166625..28169820 /locus_tag="TCM_015485" /note="dbxref CacaoGD:Thecc1EG015485" mRNA join(28166625..28167273,28167378..28168730, 28169565..28169820) /locus_tag="TCM_015485" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene11980" /inference="similar to AA sequence:Phytozome:GSVIVT01001469001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1770t1; inference alignment:Newbler:10:TSA:cgbaB_g17135t00001" CDS join(28166895..28167273,28167378..28168555) /locus_tag="TCM_015485" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23671.1" /db_xref="Phytozome:GSVIVT01001469001" /translation="MGSLTNLRHLDTRETCLEKMPLRLGRLTNLQMVSNFVVRTGNSS GMTEIENLSNLRGTLSISGLHNVTNIKDAIQAKLKTKKNLDEFVLEWSYNSNDSRYET VETEVFDVLEARESLQKLTIKYYGVTFSQRSQHCRNGWYKHGGAEFLRGAYPSIKPFP LLEILKFENMKEWEEWSFKNGVEAFPCLRQLSILWCRILKKFSHRFPFLEKLKVQKCE ALESFTGLSQHENLESEELPCLRSLFLVCCAKLIELPKSLPSLEALEIDGWLELGAFP RLVNLQKLKLLDSNAKLLGSIVDFSSLTFLHIRLISFVKCLPECIIKQFGKLLDLKIA GCGDLEGLSNEQVGSKHLASLQHLTISHCPKLVALPDEEIKLLPELKLLDLSYCDNLK KLPCEIEKVNSVRKLRVDWCPKLESFPEQGLPGMLEQLVIRDCGPLKTLPNMMLQNNK ALEYLEIHKCSSLTSLLEQGDLPTRLKRVKIYYCKNLASPPDGIMCKDKLTLEYLEID NCSPLSSFQE" mobile_element complement(28169230..28169295) /note="source:INTACT518_F239_scaffold_2-int 1868 1937" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(28172183..28178950) /locus_tag="TCM_015486" /note="dbxref CacaoGD:Thecc1EG015486" mRNA complement(join(28172183..28172978,28173539..28173632, 28173747..28173898,28174829..28174930,28175158..28175281, 28175383..28175476,28175829..28176057,28176147..28176241, 28178078..28178372,28178477..28178950)) /locus_tag="TCM_015486" /product="NAD(P)-linked oxidoreductase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038618001" /inference="similar to AA sequence:frave:gene12766" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02246t00002" CDS complement(join(28172793..28172978,28173539..28173632, 28173747..28173898,28174829..28174930,28175158..28175281, 28175383..28175476,28175829..28176057,28176147..28176241, 28178078..28178372,28178477..28178830)) /locus_tag="TCM_015486" /note="dbxref frave:gene12766" /codon_start=1 /product="NAD(P)-linked oxidoreductase superfamily protein" /protein_id="EOY23672.1" /db_xref="TAIR:AT5G53580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NKP1" /translation="MEREYHPAAHEEVAEQPPQTPRKKKNKMKNKRRFSDEQIRLLES IFESETKLEPRKKLQLARDLGLQPRQVAIWFQNRRARWKSKQIEQDYRTLRANYDNLA SRFESLKKEKQTLMLQLQSLSKLLAEPHDINKDRKGLDTGGGSESGDTKCEPEAEAQP SIQQAGVEDRGFLGLQIENDRDIEHAAQPGDEFMSMDGYRNDSPASPEKLCGFDSSAC ITCLSSSNRFALPSSPIKSLKFPLFWPWQRVKVGPLTVSPMGFGTWAWGNQLLWGYKQ SMDSELEQVFNLAVENGINLFDTADSYGTGRLNGQSEKLLGKFIREFRGEKRIEDEIV IATKFAAYPWRLTPGQFVQACRASRDRMQIEQIGIGQLHWSTANYAPPQELALWGGLV AMYEQGLVKAVGVSNYGPKQLVKIYDYLKARGVPLCSAQVQFSLLSKGEVQMEIKNIC DSLGIRLISYSPLGLGMLTGKYTPSRLPSGPRGLLFKQILPGLEPLLVSLREIAEKRS KTVPQVAINWCISKGTIPIPGVKSVKQAQENLGALGWRLSSNELLQLDCAAQQSPRRM IQNIFQTK" gene 28180340..28193608 /locus_tag="TCM_015487" /note="dbxref CacaoGD:Thecc1EG015487" mRNA join(28180340..28180474,28184073..28184180, 28184609..28184650,28188098..28189117,28193320..28193608) /locus_tag="TCM_015487" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g40940.1" /inference="similar to AA sequence:Phytozome:Glyma04g40940.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage" gene 28181194..28182548 /locus_tag="TCM_015488" /note="dbxref CacaoGD:Thecc1EG015488" mRNA 28181194..28182548 /locus_tag="TCM_015488" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.49 coverage" CDS 28181386..28181652 /locus_tag="TCM_015488" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23674.1" /translation="MILKTIIMLVLSLPKPEQMSSHILETTFNLLINECLDSFMARLI VDLWLEWWTRMRQVWKCSHCLVSIRPALRSPSLIRAKAPSLENP" CDS join(28184117..28184180,28184609..28184650, 28188098..28189071) /locus_tag="TCM_015487" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23673.1" /db_xref="Phytozome:Glyma04g40940.1" /db_xref="TAIR:AT1G57680.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I234" /translation="MEVQWFYSWISSITSSMISLTVSYRSLGEIKRKNNTNVCAMFFI PTLPFLDSSIDFATISFIAALLLLSLFSIYFIFHLRFKSKSSHHLQNFNSLWTVRFLF VFFITFWALTELLRLPLFRRRYVYPLVPQLTVPQQANLCKVHLVLSLGFFEPGFLVTL LFLLDVSVKKTSPRSLFSVFFVLASCLPIFILQVDFLFFQGPEIRFPEPFHRSWFVSH ENTTVLCAYPLLSTILFGVFGAIFSLSFLLSFWRVVSHVINKALRVRIFALAFTVIIT LALQILLMGLSVFWTPDKTAFDGVALLVFLSTFTCAVVVEGILVIKPIADSLAAGAGG GESCQGSRHGERSPGLRPVENGDSV" mobile_element 28190169..28190408 /note="source:CACAO_Mariner_E220_scaffold_9 9931 10161" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 28190201..28190610 /note="source:CACAO_MITE_S87_scaffold_3 1 416" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(28190494..28190622) /note="source:CACAO_Mariner_E11_scaffold_1 990 1118" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 28194684..28195208 /locus_tag="TCM_015490" /note="dbxref CacaoGD:Thecc1EG015490" mRNA 28194684..28195208 /locus_tag="TCM_015490" /product="SAUR family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s00920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005070t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s00920.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9443t1" CDS 28194816..28195184 /locus_tag="TCM_015490" /note="paralog of Thecc1EG005070t1" /codon_start=1 /product="SAUR family protein" /protein_id="EOY23675.1" /db_xref="Phytozome:POPTR_0015s00920.1" /db_xref="TAIR:AT2G46690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDJ9" /translation="MRSGDKHHVNFHLHMPHLHSFHHHEKKDLKDIPKGCLAILVGQG EEQQRFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITIPCHVEEFRNVQGMIDKEQH QHHHHHHYHHNHHHVWCFRV" gene complement(28195983..28203314) /locus_tag="TCM_015491" /note="dbxref CacaoGD:Thecc1EG015491" mRNA complement(join(28195983..28196110,28197431..28197861, 28197964..28198131,28198536..28198598,28198822..28198926, 28199249..28199358,28199522..28199818,28200875..28200953, 28201097..28201205,28201300..28201341,28201633..28201763, 28202529..28203314)) /locus_tag="TCM_015491" /product="Calcium-dependent protein kinase (CDPK) family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s03040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005067t1" /inference="similar to AA sequence:ricco:30089.m001020" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8138t1" CDS complement(join(28197724..28197861,28197964..28198131, 28198536..28198598,28198822..28198926,28199249..28199358, 28199522..28199818,28200875..28200953,28201097..28201205, 28201300..28201341,28201633..28201763,28202529..28203014)) /locus_tag="TCM_015491" /note="dbxref ricco:30089.m001020; paralog of Thecc1EG005067t1" /codon_start=1 /product="Calcium-dependent protein kinase (CDPK) family protein" /protein_id="EOY23676.1" /db_xref="TAIR:AT5G24430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J0N4" /translation="MGHCCSKNVSVVNNDANSAVNYSQPRPVPASTTPSVETNSYAVS PFASPLPAGVAPSPSPARTPGRKFRWPLPPPSPAKPIMAAIMRRRGSNKPAPVEGTIP EDGEGVVLDKNFGYGKNLGAKFELGKEIGRGHFGHTCWAKGKKGELKGQSVAVKIISK AKMTTAISIEDVRREVKILKALSGHKHMIKFHDVFEDANNVYIVMELCEGGELLDRIL SRGGRYTEGDAKNIIVQILSVVAFCHLQGVVHRDLKPENFLFTTRDEDAPMKIIDFGL SDFIRPDQRHNDIVGSAYYVAPEVLHRSYSVEADMWSIGVITYILLCGSRPFWARTES GIFRSVIRADPNFNDSPWPSVSPEAKDFVKRLLNKDHRKRMTAAQALTHPWLRDENHA VPLDILIYKLVKSYIRATPFKRAAQKALSKALPEDALVYLRAQFRLLEPRDGCVSLSN FKAALMRNITDAMQESRVLDIINVMEPLYYKKMDFEEFSAAAISTYQLEALEEWEGIA SEAFEYFEQEGNKVISVEELALELNLGPSTHSLLNDWIRTSDGKLSFHGYMKFLHGVT VRASNTRRR" gene 28206877..28213751 /locus_tag="TCM_015493" /note="dbxref CacaoGD:Thecc1EG015493" mRNA join(28206877..28207313,28208004..28208054, 28208130..28208366,28208790..28208888,28208998..28209053, 28209279..28209390,28209491..28209506,28209618..28209835, 28209949..28210215,28210599..28210799,28210892..28211092, 28211179..28211304,28211381..28211680,28211783..28211881, 28211971..28212449,28212549..28212602,28213027..28213383) /locus_tag="TCM_015493" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s03030.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03030.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc470t9" mRNA join(28207023..28207313,28208004..28208054, 28208136..28208366,28208790..28208888,28208998..28209053, 28209279..28209390,28209656..28209835,28209949..28210215, 28210599..28210799,28210892..28211092,28211179..28211304, 28211381..28211680,28211783..28211881,28211971..28212449, 28212544..28212602,28213027..28213751) /locus_tag="TCM_015493" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s03030.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03030.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8551t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc470t9" mRNA join(28207023..28207313,28208004..28208054, 28208136..28208366,28208790..28208888,28208998..28209053, 28209279..28209390,28209656..28209835,28209949..28210215, 28210599..28210799,28210892..28211092,28211179..28211304, 28211381..28211680,28211783..28211881,28211971..28212449, 28212549..28212603,28213027..28213751) /locus_tag="TCM_015493" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s03030.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s03030.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8551t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc470t9" CDS join(28207191..28207313,28208004..28208054, 28208136..28208366,28208790..28208888,28208998..28209053, 28209279..28209390,28209656..28209835,28209949..28210215, 28210599..28210799,28210892..28211092,28211179..28211304, 28211381..28211680,28211783..28211881,28211971..28212449, 28212544..28212602,28213027..28213028) /locus_tag="TCM_015493" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY23679.1" /db_xref="Phytozome:POPTR_0012s03030.1" /db_xref="TAIR:AT5G53620.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H758" /translation="MEAAASVAATRSGSLPMPSPSRKEWRAVSDHHAVRNPGNEVELE RSKLGQSDERTIYEHGREPADVDFCSITVDGSLDDDILQQRIHNVTRQREELQQMEVE LRAQAIARSRILEMQSSCDAKIKAHANAASKLEEQLHESEQAIHELERKMEEKERELH AIKVEKEEAWAKEDLLREQNKELATFRRERDHSEAERAQHIKQIHDLQEHVQEKERQL IELQEQYRAAQETILYKDEQLREAQTWISRVQEMDALQSSTNHSLQAELRERTEQYNQ LWHGCQRQFAEMERLHLHTVHQLQLELADARERNGSYTDESHISQANSKDLSQFGQNN GNQVDSNGSGATNANAGVISNGTSDNVQSFASAGNAPTQNQNDHVSSVPIAPSSLLGM PTYLPPGQVTALHSFVMHQQGVPPSVASHVGHYSMPAMSSIQQWQNQQTASEGFQRSA HNQLPPSQTDQSLGRSDVKYDYEMSVNGQTIHPDYLDHISQGPEANSVMSSSAGKAQV LESINTSYVVDPQPEPSLQQVSSQFHDALRLGTLEQSCESKEQNILNMNNHVLENQVL AAEGASTAASPSPPDTSVHSVNFSETTINDGTDATLPEKSVSTGQTILISAKTSETAL LDERSLLACIVRTVPTGGRIRISSTLPNRLGKMLAPLHWHDYKKKYGKLDDFVASHPE LFVIEGDYIQLREGAQEMIAATAAVAKVAAAAAASSPYSSFLPSVAVTPMAQPNRLKK VLPSIDSNHVKNENAVFKEYAAISKNAADNRSQLLGMQNQHANGICFGVAGGLSNVKI LSKSKDPAEINGANFERSSVTSVESKGSGHGRSNSNFVGKQQGRAGQLGQHYLLEDSG CIYLN" CDS join(28207191..28207313,28208004..28208054, 28208130..28208366,28208790..28208888,28208998..28209053, 28209279..28209390,28209491..28209506,28209618..28209835, 28209949..28210215,28210599..28210799,28210892..28211092, 28211179..28211304,28211381..28211680,28211783..28211881, 28211971..28212449,28212549..28212582) /locus_tag="TCM_015493" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23677.1" /db_xref="Phytozome:POPTR_0012s03030.1" /db_xref="TAIR:AT5G53620.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H758" /translation="MEAAASVAATRSGSLPMPSPSRKEWRAVSDHHAVRNPGNEVELE RSKLGQSDERTIYEVQHGREPADVDFCSITVDGSLDDDILQQRIHNVTRQREELQQME VELRAQAIARSRILEMQSSCDAKIKAHANAASKLEEQLHESEQAIHELERKMEEKERE LHAIKVEKEEAWAKEDLLREQNKELATFRRERDHSEAERAQHIKQIHDLQEHVQEKER QLIELQEQVIENYDQAAFPNSSLILQYRAAQETILYKDEQLREAQTWISRVQEMDALQ SSTNHSLQAELRERTEQYNQLWHGCQRQFAEMERLHLHTVHQLQLELADARERNGSYT DESHISQANSKDLSQFGQNNGNQVDSNGSGATNANAGVISNGTSDNVQSFASAGNAPT QNQNDHVSSVPIAPSSLLGMPTYLPPGQVTALHSFVMHQQGVPPSVASHVGHYSMPAM SSIQQWQNQQTASEGFQRSAHNQLPPSQTDQSLGRSDVKYDYEMSVNGQTIHPDYLDH ISQGPEANSVMSSSAGKAQVLESINTSYVVDPQPEPSLQQVSSQFHDALRLGTLEQSC ESKEQNILNMNNHVLENQVLAAEGASTAASPSPPDTSVHSVNFSETTINDGTDATLPE KSVSTGQTILISAKTSETALLDERSLLACIVRTVPTGGRIRISSTLPNRLGKMLAPLH WHDYKKKYGKLDDFVASHPELFVIEGDYIQLREGAQEMIAATAAVAKVAAAAAASSPY SSFLPSVAVTPMAQPNRLKKVLPSIDSNHVKNENAVFKEYAAISKNAADNRSQLLGMQ NQHANGICFGVAGGLSNVKILSKSKDPAEINGANFERSSVTSVESKGSGHGRSNSNFV GKQQGRATGAALSSRR" CDS join(28207191..28207313,28208004..28208054, 28208136..28208366,28208790..28208888,28208998..28209053, 28209279..28209390,28209656..28209835,28209949..28210215, 28210599..28210799,28210892..28211092,28211179..28211304, 28211381..28211680,28211783..28211881,28211971..28212449, 28212549..28212582) /locus_tag="TCM_015493" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY23678.1" /db_xref="Phytozome:POPTR_0012s03030.1" /db_xref="TAIR:AT5G53620.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H758" /translation="MEAAASVAATRSGSLPMPSPSRKEWRAVSDHHAVRNPGNEVELE RSKLGQSDERTIYEHGREPADVDFCSITVDGSLDDDILQQRIHNVTRQREELQQMEVE LRAQAIARSRILEMQSSCDAKIKAHANAASKLEEQLHESEQAIHELERKMEEKERELH AIKVEKEEAWAKEDLLREQNKELATFRRERDHSEAERAQHIKQIHDLQEHVQEKERQL IELQEQYRAAQETILYKDEQLREAQTWISRVQEMDALQSSTNHSLQAELRERTEQYNQ LWHGCQRQFAEMERLHLHTVHQLQLELADARERNGSYTDESHISQANSKDLSQFGQNN GNQVDSNGSGATNANAGVISNGTSDNVQSFASAGNAPTQNQNDHVSSVPIAPSSLLGM PTYLPPGQVTALHSFVMHQQGVPPSVASHVGHYSMPAMSSIQQWQNQQTASEGFQRSA HNQLPPSQTDQSLGRSDVKYDYEMSVNGQTIHPDYLDHISQGPEANSVMSSSAGKAQV LESINTSYVVDPQPEPSLQQVSSQFHDALRLGTLEQSCESKEQNILNMNNHVLENQVL AAEGASTAASPSPPDTSVHSVNFSETTINDGTDATLPEKSVSTGQTILISAKTSETAL LDERSLLACIVRTVPTGGRIRISSTLPNRLGKMLAPLHWHDYKKKYGKLDDFVASHPE LFVIEGDYIQLREGAQEMIAATAAVAKVAAAAAASSPYSSFLPSVAVTPMAQPNRLKK VLPSIDSNHVKNENAVFKEYAAISKNAADNRSQLLGMQNQHANGICFGVAGGLSNVKI LSKSKDPAEINGANFERSSVTSVESKGSGHGRSNSNFVGKQQGRATGAALSSRR" gene complement(28213977..28216019) /locus_tag="TCM_015494" /note="dbxref CacaoGD:Thecc1EG015494" mRNA complement(join(28213977..28214586,28214672..28214756, 28215413..28215489,28215820..28216019)) /locus_tag="TCM_015494" /product="GRF1-interacting factor 3" /inference="similar to AA sequence:Phytozome:GSVIVT01038626001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12596t00001" CDS complement(join(28214230..28214586,28214672..28214756, 28215413..28215489,28215820..28215870)) /locus_tag="TCM_015494" /codon_start=1 /product="GRF1-interacting factor 3" /protein_id="EOY23680.1" /db_xref="Phytozome:GSVIVT01038626001" /db_xref="TAIR:AT4G00850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23091" /translation="MQQTPQLMTITTEQIQKCLDENKQLIMAILENQNQGKFAENASF QAQLQQNLMYLAKIADAQPQAPTTSSQMPPQSAVQQEQYVQCAQAVMAKQHPGFLAPK LPFHLNDQQQQTQQLMYLQQQQLNQPQMGLRSAAPSGTYQGVQSGLGNNFMNVQAIKQ DSSEDGADEGLQNSAYGHNATDTESMRLK" gene 28216258..28217772 /locus_tag="TCM_047014" /note="dbxref CacaoGD:Thecc1EG047014" mRNA join(28216258..28216408,28217551..28217772) /locus_tag="TCM_047014" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g40890.1" /inference="similar to AA sequence:ricco:29853.m000372" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g16266t00001" CDS join(28216286..28216408,28217551..28217646) /locus_tag="TCM_047014" /note="dbxref ricco:29853.m000372" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23681.1" /db_xref="TAIR:AT5G53650.1" /translation="MGYVLRVRLASFFTGAATASFLGLYVLYKDYKVAHESITQQVKS LHESLDRRISAVESLKRVETSQHVEAAE" gene complement(28218509..28222350) /locus_tag="TCM_015496" /note="dbxref CacaoGD:Thecc1EG015496" mRNA complement(join(28218509..28218991,28219103..28220784, 28220897..28222350)) /locus_tag="TCM_015496" /product="PEP1 receptor 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02990.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02990.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1823t2" CDS complement(join(28218663..28218991,28219103..28220784, 28220897..28222182)) /locus_tag="TCM_015496" /codon_start=1 /product="PEP1 receptor 1, putative" /protein_id="EOY23682.1" /db_xref="Phytozome:POPTR_0012s02990.1" /db_xref="TAIR:AT1G17230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I228" /translation="MPPTEGPCMFNKNMVLLFQYHVIFSVIIFLVSSISLPSPAIYLL QFLDSLPKHTQLLLPWNQSNSPKSHCQWAGVSCCSNKSFQVRALNLSGFGLSGILNNS VPYLCLHKYMVSLDLSGNSFSGNIPQMLGNCGQLNTILLNDNGFGGSIPQQIFMSKWL RRIDLGYNSLSGEISPEVSLCTNLEYIGLYNNFLTGEAPSGMFSLPNLKFIYLNTNNL TGSLPDFTPSCGILDLWIHENELSGSLPRTLGNCYNLTTFIASYNNFGGVIPPETFKG LLQLKVLYLDENNLEGEIPDTFWSLENLQELVLSGNKLNGTISERIAQCNQLAVIALS GNNLVGRIPQSIGNLTGLTYLFIFNNMLNGSLPPELGNCSSLVELRLQHNFIGGSIPP EICNLESLEVLFMFSNHIEGRIPHGIGRLSNLAQLALKNFPALVRLDLSGNRLNGSIP SGICAGGDFSVLALGNNRFSGSFPTDIGKCSSLKRVVLRNNLLQGPMPADLEENCGIF FLDVQGNLLEGKIPSVFGHWTNLSMLDFSQNRLSGSIPSELGKLENLQILRVSSNRLT GSIPSELGHCKKIIKLDLSANYLSGSLSSEILSSPKLQSLLLQENKLVGIIPDSFSSL QSLLELQLGSNMLQGPIPCSLSNLHHFSSVLNLSNNRLSGEIPACLGKLDKLQILDLS SNSFYGEIPVDMNNMISLYFVNISFNHLKGKLPSAWMRIIASYPGSFIGNAELCPLGD EAGYCRELRKGNGRGRVLAGVITAVVVSVALLCAVIYILVVRLLQKKHSYDQTLLHER QSRTEDLPENLKIEDIIRATEGWSDKYIIGRGKHGTVYRTESSDSRNQWAVKKVNLSD TNFRLEMRTLRLIRHRNILRMAGYCIRDGYGFIVTEFMSGGTLFDVLHQSQPRLVLNW DTRHRIAFGIAHGLSYLHHDCVPQIIHRDIKSDNILLDSEFEPKIGDFGIAKLVCDTD SSSTRSAIVGTLGYIAPENAYSTQLTEKCDVYSYGVILLEILCRKLPVDPCFQEGLDI VSWARQNLQDNEEYICFLDEEISLWVNDEQQKALRLLELALHCTQAMADTRPSMRDVV ASLIRLNDKA" gene 28226008..28229159 /locus_tag="TCM_015497" /note="dbxref CacaoGD:Thecc1EG015497" mRNA join(28226008..28226888,28227151..28227298, 28227621..28227836,28227976..28228846) /locus_tag="TCM_015497" /product="Growth-regulating factor 7, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038629001" /inference="similar to AA sequence:Phytozome:POPTR_0015s00860.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc20t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9456t2" mRNA join(28226202..28226888,28227151..28227318, 28227452..28227836,28227976..28229159) /locus_tag="TCM_015497" /product="Growth-regulating factor 7, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038629001" /inference="similar to AA sequence:Phytozome:GSVIVT01038629001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9456t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9456t2" CDS join(28226504..28226888,28227151..28227318, 28227452..28227836,28227976..28228771) /locus_tag="TCM_015497" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Growth-regulating factor 7, putative isoform 1" /protein_id="EOY23683.1" /db_xref="Phytozome:GSVIVT01038629001" /translation="MNMAGYSVSDKATNESSSIEAVDLGVKLQSSKLLLPGKMMMVHH DNHHRPFPPYAICYGDVDADGPTGNNNKPKTSNIYDVFQSSDSGAAAVAVAAIASGGA VGVRTLQRFDIAPTTPFAAHTAFKSPGGMAASLEFPFTNAQWKELERQAMIFKYMKAS VPVPPDLLIPITGSASVPAASNSALGGGALNLRFSSRGDLEPGRCRRTDGKKWRCSRD VAPDQKYCERHMHRGRPRSRKPVELPNKKTRYTHTQALPSTASTILTKNASPSQFLGT LAQPFRQNQTTFFLDKPSEKAATFWPVASVSSYKEPRNSDWIVSEELIPLASSDQRWH YLMQTVPTSARSFSNADNSSVLNQNYNKEPLNLNSYANFNATEDQQSNRCPLFLNSEI VPLEKSPEIAARGFIDAWSTGVSENRNANSGTETSVSFNGKFSLSSLSLSMGVTDIRD DEMAPIHMGLGVTESDQNHEYASKSHLSSWLGPASWAASTPGGPLAEVLRPSKIASAV ATTEGSSNSSSPVTGNGNSCSPPVTAVSSPSGVLQRTLASFSDSSGSSSPTLASSGAK PEIGSMWLKGN" CDS join(28226504..28226888,28227151..28227298, 28227621..28227836,28227976..28228771) /locus_tag="TCM_015497" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Growth-regulating factor 7, putative isoform 2" /protein_id="EOY23684.1" /db_xref="Phytozome:POPTR_0015s00860.1" /translation="MNMAGYSVSDKATNESSSIEAVDLGVKLQSSKLLLPGKMMMVHH DNHHRPFPPYAICYGDVDADGPTGNNNKPKTSNIYDVFQSSDSGAAAVAVAAIASGGA VGVRTLQRFDIAPTTPFAAHTAFKSPGGMAASLEFPFTNAQWKELERQAMIFKYMKAS VPVPPDLLIPITGSASVPELPNKKTRYTHTQALPSTASTILTKNASPSQFLGTLAQPF RQNQTTFFLDKPSEKAATFWPVASVSSYKEPRNSDWIVSEELIPLASSDQRWHYLMQT VPTSARSFSNADNSSVLNQNYNKEPLNLNSYANFNATEDQQSNRCPLFLNSEIVPLEK SPEIAARGFIDAWSTGVSENRNANSGTETSVSFNGKFSLSSLSLSMGVTDIRDDEMAP IHMGLGVTESDQNHEYASKSHLSSWLGPASWAASTPGGPLAEVLRPSKIASAVATTEG SSNSSSPVTGNGNSCSPPVTAVSSPSGVLQRTLASFSDSSGSSSPTLASSGAKPEIGS MWLKGN" gene complement(28230081..28232999) /locus_tag="TCM_015498" /note="dbxref CacaoGD:Thecc1EG015498" mRNA complement(join(28230081..28231547,28231660..28231806, 28231901..28232137,28232229..28232558,28232657..28232999)) /locus_tag="TCM_015498" /product="IQ-domain 17, putative" /inference="alignment:exonerate- protein:2:ricco:29672.m000219" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005048t2" /inference="similar to AA sequence:ricco:29672.m000219" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9457t2" CDS complement(join(28230777..28231547,28231660..28231806, 28231901..28232137,28232229..28232558,28232657..28232782)) /locus_tag="TCM_015498" /note="dbxref ricco:29672.m000219; paralog of Thecc1EG005048t2" /codon_start=1 /product="IQ-domain 17, putative" /protein_id="EOY23685.1" /db_xref="TAIR:AT4G00820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I225" /translation="MGKIGGNSWLTAVKKAFRSPTKENEKRSCRRREDNEQEEEENKR GKRRWIFKKPSYQETVIQHSEARTIATTANNAKAITNSESSALNTIPEAAKAEQRHAI AVAIATTAAAQAAVATAQAAVEVVRLTRPSIFVREHFAAIVIQTAFRGYLARRALRAL KGLVKLQALVRGHNVRKRANITLRCMEAMVRVQARVRDQRKRLAAHEGSTDSVFSDPN SLWSSHLVDRKSISREESGNVDDWIRWDEHPKTLEEIQAILQATKEAALKREKALAHA FSHQIWRIDRGAVESEEELDGNTRWVDRWTTRKQWESPGRMSCDHIDPIKTVEIDTFR PYSYSAPHSQKSNRQYHHQQRRPSSYFVTSPLHKANNSLPIRSITPSPSKAKPLQMYS ASPRYLKEEKSHPSPHTPNSGSYTHRMSGNGGAAAPMPNYMAATASAMARFRSQSAPK QRPSTPEREKVGSAKKRLSFPVPDQCGVDGSKDQVYDYNLGSPSYKSGHGGHFGMEQK SNLSSCYADSLGEEIFPPSTNDLRKWLR" mobile_element complement(28233010..28233068) /note="source:CACAO_M_E58268_F98_scaffold_9 635 693" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28234655..28236318 /locus_tag="TCM_015499" /note="dbxref CacaoGD:Thecc1EG015499" mRNA join(28234655..28235185,28235467..28235489, 28235635..28236318) /locus_tag="TCM_015499" /product="Small heat shock protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006853t1" /inference="similar to AA sequence:ricco:29485.m000142" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1116t7; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1116t7" mRNA join(28234826..28235181,28235635..28236209) /locus_tag="TCM_015499" /product="Small heat shock protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006853t1" /inference="similar to AA sequence:ricco:29485.m000142" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03881t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8168t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1116t7" CDS join(28234926..28235185,28235467..28235489, 28235635..28236062) /locus_tag="TCM_015499" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29485.m000142; paralog of Thecc1EG006853t1" /codon_start=1 /product="Small heat shock protein isoform 1" /protein_id="EOY23686.1" /db_xref="TAIR:AT4G27670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B2D2G4" /translation="MASTLSWSSSPLVSNRAKPCSTKAIIPRSVSFPSGNSSCGRLSV VRAQAAGDNKDTSVDVHVDKNNQGRAVEKRPKRSAVDVSPFGNSKLMHFPCLFDPLSP MRSMRQMLDTMDQIFEDAMTLPGRSRSGGEVRAPWDIKDDEHEVKMRFDMPGLAKEDV KVSVEDDILVVKGEHKQEEGGDDSWTKRSYSSYDTRLQLPDNCEKDKIKAELKNGVLF ISIPKTKVERKVIDVDVQ" CDS join(28234926..28235181,28235635..28236062) /locus_tag="TCM_015499" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29485.m000142; paralog of Thecc1EG006853t1" /codon_start=1 /product="Small heat shock protein isoform 2" /protein_id="EOY23687.1" /db_xref="TAIR:AT4G27670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B2D2G4" /translation="MASTLSWSSSPLVSNRAKPCSTKAIIPRSVSFPSGNSSCGRLSV VRAQAAGDNKDTSVDVHVDKNNQGRAVEKRPKRSAVDVSPFGLFDPLSPMRSMRQMLD TMDQIFEDAMTLPGRSRSGGEVRAPWDIKDDEHEVKMRFDMPGLAKEDVKVSVEDDIL VVKGEHKQEEGGDDSWTKRSYSSYDTRLQLPDNCEKDKIKAELKNGVLFISIPKTKVE RKVIDVDVQ" gene complement(28236593..28239894) /locus_tag="TCM_015500" /note="dbxref CacaoGD:Thecc1EG015500" mRNA complement(join(28236593..28237304,28239813..28239894)) /locus_tag="TCM_015500" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02920.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02920.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4240t1_C1" CDS complement(28236809..28237300) /locus_tag="TCM_015500" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23688.1" /db_xref="Phytozome:POPTR_0012s02920.1" /translation="MGNCWALRRPSEGSCLGAVNAKPEKVLQVVKIDGKILEFRAPIL VKDVLVKFSGSGIGLSKTVTQHLPLDFELKMGKVYYILPSEDPVGAPTPERISSVGGT QQTGGVRRIKVVIRKQELQQLLTKQISVEEVLAGLEKSNGNFVGSPRNWKPKLESISE EKE" gene 28241720..28244299 /locus_tag="TCM_015501" /note="dbxref CacaoGD:Thecc1EG015501" mRNA join(28241720..28241850,28242407..28242688, 28242806..28242941,28243108..28243219,28243339..28243372, 28243610..28243841,28243919..28244299) /locus_tag="TCM_015501" /product="RNA-binding family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g40770.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005042t2" /inference="similar to AA sequence:Phytozome:GSVIVT01027434001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09061t00001" CDS join(28241803..28241850,28242407..28242688, 28242806..28242941,28243108..28243219,28243339..28243372, 28243610..28243841,28243919..28244004) /locus_tag="TCM_015501" /note="paralog of Thecc1EG005042t2" /codon_start=1 /product="RNA-binding family protein, putative" /protein_id="EOY23689.1" /db_xref="Phytozome:GSVIVT01027434001" /db_xref="TAIR:AT2G46780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T8L2" /translation="MRKEERYAGELDTARHVLILAWVLSLLSLWGWLCFVLGCYSLSQ SGPNKMAGENNATGFGDTTYTKIFVGGLAWETKRDALKRYFEQFGEILEAVVINDKTT GRSKGYGFVTFKDADSAMRACHNPFPVIDGRRANCNLASLGAQKNRPTSASQHGMEKF SPPPRVMAPPSTGTPAVYRQIIPQYAFPYSAYGYPGYTQDIYLMNYYNAYGGQQLPSH FTTGSSGSHGVYLSYFPLYHQQGQGSPTQYPKITQYPYPSPPYRAFGSLTLPPAASPS PLAPTGFLYNAAAPATAESAGMPGTASAQNSSV" gene complement(28245622..28249959) /locus_tag="TCM_015502" /note="dbxref CacaoGD:Thecc1EG015502" mRNA complement(join(28245622..28246054,28246158..28246219, 28247769..28247837,28247935..28247982,28248072..28248131, 28248259..28248371,28248453..28248525,28248634..28248678, 28248769..28248879,28248968..28249556,28249680..28249959)) /locus_tag="TCM_015502" /product="CTC-interacting domain 11 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G32790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015617t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s00770.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8343t5; alternateUTRof:Thecc1EG015502t1; inference alignment:Newbler:10:TSA:cgbaP1_g02372t00001" mRNA complement(join(28245622..28246054,28246158..28246219, 28247769..28247837,28247932..28247982,28248072..28248131, 28248259..28248371,28248453..28248525,28248634..28248678, 28248769..28248879,28248968..28249556,28249680..28249959)) /locus_tag="TCM_015502" /product="CTC-interacting domain 11 isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT1G32790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015617t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s00770.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8343t1; inference alignment:Newbler:10:TSA:cgbaP1_g02372t00001" mRNA complement(join(28245646..28246054,28246158..28246219, 28247769..28247837,28247935..28247982,28248037..28248131, 28248319..28248371,28248453..28248525,28248634..28248678, 28248769..28248879,28248968..28249556,28249676..28249709)) /locus_tag="TCM_015502" /product="CTC-interacting domain 11 isoform 5" /inference="alignment:exonerate- protein:2:TAIR:AT1G32790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015617t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s00770.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc686t2; inference alignment:Newbler:10:TSA:cgbaP1_g02372t00001" mRNA complement(join(28245677..28246054,28246158..28246219, 28247769..28247837,28247935..28247982,28248072..28248131, 28248259..28248371,28248453..28248525,28248634..28248678, 28248769..28248879,28248968..28249526,28249676..28249843)) /locus_tag="TCM_015502" /product="CTC-interacting domain 11 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G32790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015617t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s00770.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01984t00002; alternateUTRof:Thecc1EG015502t1; inference alignment:Newbler:10:TSA:cgbaP1_g02372t00001" mRNA complement(join(28245680..28246054,28246158..28246219, 28247769..28247837,28247935..28247982,28248072..28248131, 28248259..28248371,28248453..28248525,28248634..28248678, 28248769..28248879,28248968..28249556,28249676..28249837)) /locus_tag="TCM_015502" /product="CTC-interacting domain 11 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G32790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015617t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s00770.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02372t00001; inference alignment:Newbler:10:TSA:cgbaP1_g02372t00001" CDS complement(join(28245997..28246054,28246158..28246219, 28247769..28247837,28247935..28247982,28248072..28248131, 28248259..28248371,28248453..28248525,28248634..28248678, 28248769..28248879,28248968..28249507)) /locus_tag="TCM_015502" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015617t1" /codon_start=1 /product="CTC-interacting domain 11 isoform 1" /protein_id="EOY23690.1" /db_xref="Phytozome:POPTR_0015s00770.1" /db_xref="TAIR:AT1G32790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SG10" /translation="MAVAENAGAKIGSSGQNLENTVVSSDSNAVSDPDKSKTRTDSVT AAKTTKEANFQHEQPAAAVNSNGDSNTQMQNGFSEKNQHQVGAKTAGFNGFSNLENGG NGEIFKNDMRDLVEILSKLNPMAEEFVPPSLANHPHHHNFNDNHDQNQNQTNPFLENG FGYDTDNFVAGNVNGHTNRRKRNNFSQGKRRLNNRTSMAQREDAIRKTVYVSDIDLQV TEEHLAGLFLSCGPVVDCRICGDPNSVLRFAFVEFYSEEDARVALNLSGTMLGFYPVR VLPSKTAIAPVNPTFLPRSEDEREMCTRTIYCTNIDKKVTQADVKLFFESVCGEVHRL RLLGDYHHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPVRPRALRPAMH " CDS complement(join(28245997..28246054,28246158..28246219, 28247769..28247837,28247935..28247982,28248072..28248131, 28248259..28248371,28248453..28248525,28248634..28248678, 28248769..28248879,28248968..28249507)) /locus_tag="TCM_015502" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015617t1" /codon_start=1 /product="CTC-interacting domain 11 isoform 1" /protein_id="EOY23691.1" /db_xref="Phytozome:POPTR_0015s00770.1" /db_xref="TAIR:AT1G32790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SG10" /translation="MAVAENAGAKIGSSGQNLENTVVSSDSNAVSDPDKSKTRTDSVT AAKTTKEANFQHEQPAAAVNSNGDSNTQMQNGFSEKNQHQVGAKTAGFNGFSNLENGG NGEIFKNDMRDLVEILSKLNPMAEEFVPPSLANHPHHHNFNDNHDQNQNQTNPFLENG FGYDTDNFVAGNVNGHTNRRKRNNFSQGKRRLNNRTSMAQREDAIRKTVYVSDIDLQV TEEHLAGLFLSCGPVVDCRICGDPNSVLRFAFVEFYSEEDARVALNLSGTMLGFYPVR VLPSKTAIAPVNPTFLPRSEDEREMCTRTIYCTNIDKKVTQADVKLFFESVCGEVHRL RLLGDYHHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPVRPRALRPAMH " CDS complement(join(28245997..28246054,28246158..28246219, 28247769..28247837,28247935..28247982,28248072..28248131, 28248259..28248371,28248453..28248525,28248634..28248678, 28248769..28248879,28248968..28249507)) /locus_tag="TCM_015502" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG015617t1" /codon_start=1 /product="CTC-interacting domain 11 isoform 1" /protein_id="EOY23693.1" /db_xref="Phytozome:POPTR_0015s00770.1" /db_xref="TAIR:AT1G32790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SG10" /translation="MAVAENAGAKIGSSGQNLENTVVSSDSNAVSDPDKSKTRTDSVT AAKTTKEANFQHEQPAAAVNSNGDSNTQMQNGFSEKNQHQVGAKTAGFNGFSNLENGG NGEIFKNDMRDLVEILSKLNPMAEEFVPPSLANHPHHHNFNDNHDQNQNQTNPFLENG FGYDTDNFVAGNVNGHTNRRKRNNFSQGKRRLNNRTSMAQREDAIRKTVYVSDIDLQV TEEHLAGLFLSCGPVVDCRICGDPNSVLRFAFVEFYSEEDARVALNLSGTMLGFYPVR VLPSKTAIAPVNPTFLPRSEDEREMCTRTIYCTNIDKKVTQADVKLFFESVCGEVHRL RLLGDYHHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPVRPRALRPAMH " CDS complement(join(28245997..28246054,28246158..28246219, 28247769..28247837,28247932..28247982,28248072..28248131, 28248259..28248371,28248453..28248525,28248634..28248678, 28248769..28248879,28248968..28249507)) /locus_tag="TCM_015502" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015617t1" /codon_start=1 /product="CTC-interacting domain 11 isoform 3" /protein_id="EOY23692.1" /db_xref="Phytozome:POPTR_0015s00770.1" /db_xref="TAIR:AT1G32790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SG10" /translation="MAVAENAGAKIGSSGQNLENTVVSSDSNAVSDPDKSKTRTDSVT AAKTTKEANFQHEQPAAAVNSNGDSNTQMQNGFSEKNQHQVGAKTAGFNGFSNLENGG NGEIFKNDMRDLVEILSKLNPMAEEFVPPSLANHPHHHNFNDNHDQNQNQTNPFLENG FGYDTDNFVAGNVNGHTNRRKRNNFSQGKRRLNNRTSMAQREDAIRKTVYVSDIDLQV TEEHLAGLFLSCGPVVDCRICGDPNSVLRFAFVEFYSEEDARVALNLSGTMLGFYPVR VLPSKTAIAPVNPTFLPRSEDEREMCTRTIYCTNIDKKVTQADVKLFFESVCGEVVHR LRLLGDYHHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPVRPRALRPAM H" CDS complement(join(28247825..28247837,28247935..28247982, 28248037..28248131,28248319..28248371,28248453..28248525, 28248634..28248678,28248769..28248879,28248968..28249507)) /locus_tag="TCM_015502" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG015617t2" /codon_start=1 /product="CTC-interacting domain 11 isoform 5" /protein_id="EOY23694.1" /db_xref="Phytozome:POPTR_0015s00770.2" /db_xref="TAIR:AT3G49390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SG10" /translation="MAVAENAGAKIGSSGQNLENTVVSSDSNAVSDPDKSKTRTDSVT AAKTTKEANFQHEQPAAAVNSNGDSNTQMQNGFSEKNQHQVGAKTAGFNGFSNLENGG NGEIFKNDMRDLVEILSKLNPMAEEFVPPSLANHPHHHNFNDNHDQNQNQTNPFLENG FGYDTDNFVAGNVNGHTNRRKRNNFSQGKRRLNNRTSMAQREDAIRKTVYVSDIDLQV TEEHLAGLFLSCGPVVDCRICGDPNSVLRFAFVEFYSEEDARVALNLSGTMLGFYPSE DEREMCTRTIYCTNIDKKVVTLSTIFLKCQLLKLMSSSSLNQFVGRFIA" gene complement(28253814..28262515) /locus_tag="TCM_015503" /note="dbxref CacaoGD:Thecc1EG015503" mRNA complement(join(28253814..28254971,28255383..28256099, 28256696..28256742,28257424..28257489,28257565..28257657, 28258471..28258524,28258604..28258777,28258901..28258982, 28259543..28260006,28260200..28260311,28260688..28260767, 28260882..28260968,28261275..28261359,28261459..28261561, 28261736..28261820,28262136..28262515)) /locus_tag="TCM_015503" /product="Transducin/WD40 repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02880.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02880.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8179t4" CDS complement(join(28254593..28254971,28255383..28256099, 28256696..28256742,28257424..28257489,28257565..28257657, 28258471..28258524,28258604..28258777,28258901..28258982, 28259543..28260006,28260200..28260311,28260688..28260767, 28260882..28260968,28261275..28261359,28261459..28261561, 28261736..28261820,28262136..28262252)) /locus_tag="TCM_015503" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative" /protein_id="EOY23695.1" /db_xref="Phytozome:POPTR_0012s02880.1" /db_xref="TAIR:AT3G49400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I219" /translation="MAWRFQAATLVASPSYPNSIAWSDENLIAVASGHIVTILNPALP FGPRGLVTVPKSEPYPIGVVKKEDLLSGCLLPTTLSREPRPCVRSISWSNLGMAPNSG CLLAVCTTEGHVKLYCPPFRDFSAEWIEVLDMTDRLYDYLASISFKEPNIPPTEMSNE QVSDHPPDSVSGKECKRRRVNTSGIRNFGLETSCDQTPCYKNSKDVNAGSSPSSEAKG QGPCKVLNAKSGRLIGKSSHQTVPSFKSKGKSAKKMHEICSLPLITADQYASHGAMLS SLVVAWSPMLKLSSEMCLVPENDSSNWFSLLAVGAKSGKISFWRIHAPEYYSIEQSGP PTAVELIGILQVHNSWVTAISWALLASDSSNPQVLLATGSSDGSVRIWIGHGEELLKS LEVNNAPFYLLKEIININAVPVSVLSLMPSQSLHKILLAVGKGSGALEVWIGDISVKK FNRAGSYDAHDQVVTGLAWAFDGCFLYSCSQDNFVRSWSLRGSSLTEVAIPSSSPGLR SVSDLPDVFISCLGLVVSPSNLAVAMVRSFDVNQLDHMYEARLQKAAVEFFWIGGQQK DILSNTSLGFDIEGFPGFSEKELVYWESNILWSLKQYEYWDKPLVVWDIIAALLAFKQ SASHYVDHVLVKWLSLSLVDSHVEHSIEMILPHVCKSFSKAASRQLHLLNIICRRVLL SEMKADEINSNLLNLGGLEEADFTQDKQHNLWMELLASSERELRERLVGFSFSAYKSI ASNAASCSPEPGQWYPHGIPQMEQWVAHHNCHVHEQLKVLASEIRTCKRTECIELEAE EQCSYCSAPVPFDSPEFAFCKGLESTDGIGQKHKLARCAVSMQVCPTTPLWLCKCCNR WTSNLAPETLFMMSQYSIDFRLSPQSSPVKEVSKPLCPFCGILLQRFQPEFLLSALPV " gene 28262615..28268510 /locus_tag="TCM_015504" /note="dbxref CacaoGD:Thecc1EG015504" mRNA join(28262615..28262907,28263218..28263303, 28263644..28263763,28264025..28264090,28264172..28264246, 28264333..28264438,28264541..28264587,28264672..28264729, 28265154..28265203,28265300..28265356,28265897..28265976, 28266093..28266164,28266263..28266305,28266551..28266559, 28267392..28267563,28267667..28267761,28267901..28268510) /locus_tag="TCM_015504" /product="SER/ARG-rich protein 34A" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038636001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006418t5" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400005809" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00471t00001" CDS join(28263677..28263763,28264025..28264090, 28264172..28264246,28264333..28264438,28264541..28264587, 28264672..28264729,28265154..28265203,28265300..28265356, 28265897..28265976,28266093..28266164,28266263..28266305, 28266551..28266559,28267392..28267563,28267667..28267761, 28267901..28268158) /locus_tag="TCM_015504" /note="paralog of Thecc1EG006418t5" /codon_start=1 /product="SER/ARG-rich protein 34A" /protein_id="EOY23696.1" /db_xref="Phytozome:PGSC0003DMP400005809" /db_xref="TAIR:AT3G49430.3" /db_xref="UniProtKB/TrEMBL:UniRef50_C0PR09" /translation="MSGHFSRTIYVGNLPSDIKEWEVEDLFYKYGRILDIELKIPPRP PCYCFVEFENSRDAEDAIRGRDGYNFDGCRLRVELAHGGRGQSSSDRRGGYDGGKAKF GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEISRDSDGTFGIVDYTNYDDM KYAVRKLDDTEFRNPWARAYIRVKRYEGSPSRSQSRSRSRSRSVRRDRSKSRERSLSK SPVKSRSASPVKSSRARSRSRSRSGSPDKARSPSSFSTKTLDLTASGLSVSLPLSLSL YIWYRAPCLNPPNLQVSTPVAKQLQANPSASDLQLKILGTMATSELACSYAAMILHDD GNSITAEKIATVVKKANVAVESYWPSLFAKLLEKKSVDDLIMNVGSAGGGAPVAVAPS AGAGAAAAPAAEEKKEEPKEESDDDMGFSLFD" mobile_element 28269956..28270280 /note="source:CACAO_PIF_E144_scaffold_10 1255 1570" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28270686..28270883) /note="source:scaffold_2_CACTA_0245 1472 1638" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28271024..28271240 /note="source:CACAO_PIF_E144_scaffold_10 2173 2381" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28272129..28272526 /note="source:CACAO_M_S_E432729_F205_scaffold_136 1 401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28273116..28273159 /note="source:scaffold_1_CACTA_0030 646 689" /mobile_element_type="transposon:TIR/CACTA" gene 28273464..28274208 /locus_tag="TCM_015505" /note="dbxref CacaoGD:Thecc1EG015505" mRNA join(28273464..28273468,28273562..28273659, 28273802..28274208) /locus_tag="TCM_015505" /product="60S acidic ribosomal protein family, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038637001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015504t1" /inference="similar to AA sequence:TAIR:AT5G24510.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1294t2" CDS join(28273591..28273659,28273802..28274077) /locus_tag="TCM_015505" /note="paralog of Thecc1EG015504t1" /codon_start=1 /product="60S acidic ribosomal protein family, putative" /protein_id="EOY23697.1" /db_xref="TAIR:AT5G24510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLV1" /translation="MATSELACSYAALILHDDRIPITAEKIVTLVKTAKVPVESYWPS LFTKLLAKRNIDDIIMNVGSGGDGAPVAAAAASVGTGAGAAAASTPAVEEKKEEDKEE TDDDIGFGLFDD" mobile_element 28275158..28275556 /note="source:CACAO_on_E231_scaffold_8 16 415" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28275433..28275573 /note="source:scaffold_4_CACTA_0483 6700 6837" /mobile_element_type="transposon:TIR/CACTA" gene 28276462..28277109 /locus_tag="TCM_015506" /note="dbxref CacaoGD:Thecc1EG015506" mRNA 28276462..28277109 /locus_tag="TCM_015506" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s00710.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15700t00001" CDS 28276680..28276928 /locus_tag="TCM_015506" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23698.1" /translation="MMMSLFSSFEALWADSYGQKMKFSGSTEQAKPKKVSCLEGSKKE TDKNSSSPANIKKPQQLLRPRFAAELDGVHCFETIIPY" gene 28278464..28279058 /locus_tag="TCM_015507" /note="dbxref CacaoGD:Thecc1EG015507" mRNA join(28278464..28278637,28278750..28279058) /locus_tag="TCM_015507" /product="Ankyrin repeat and KH domain-containing protein R11A8.7, putative" /inference="alignment:exonerate-protein:2:frave:gene12459" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9459t1" CDS join(28278548..28278637,28278750..28278887) /locus_tag="TCM_015507" /codon_start=1 /product="Ankyrin repeat and KH domain-containing protein R11A8.7, putative" /protein_id="EOY23699.1" /translation="MAVATIYAAIPAVVAAAVGIYSFDRHSGAEEFGGGIRSSIGSML AKPRQKLKTTLPPKVAPQFDGLHCFETLVGC" gene complement(28279505..28282533) /locus_tag="TCM_015508" /note="dbxref CacaoGD:Thecc1EG015508" mRNA complement(join(28279505..28280350,28280571..28280652, 28281133..28281216,28281313..28281489,28281604..28281775, 28282024..28282533)) /locus_tag="TCM_015508" /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015607t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02830.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06345t00001" CDS complement(join(28279869..28280350,28280571..28280652, 28281133..28281216,28281313..28281489,28281604..28281775, 28282024..28282340)) /locus_tag="TCM_015508" /note="paralog of Thecc1EG015607t1" /codon_start=1 /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein" /protein_id="EOY23700.1" /db_xref="Phytozome:POPTR_0012s02830.1" /db_xref="TAIR:AT1G64720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I215" /translation="MCTEMMVYMGPLWIAFLVGIIVGWAWKPKWASQGTQKLSCAVSK SLELSLPPSPSKSPMSPLKSIGSAPCLNSLKTQSQASKYWVIKNGAQGKTPSVSLSEY DNCSTCCSSQLIEGRSSVVTEEDLKHLWQLVEMRDGGPSWIHMMDRSTPNMSYQAWRR DPKTGPPQYRSKTVFEDVTTKMVRDFFWDDEFRPKWDDMLAYSATIEECPTTGTMVVQ WIRKFPFFCSDREYIIGRRIWELDGSYYCVTKGVPWPSIPRQKKPRRVDLYYSSWYIR AVESERGHGQRNACEVLLFHHEDMGIPWEIVKLGVRQGMWGTVKKIEPGLRAYQKERA SVAPLSRSASMAQINTKINTEYLRSLETNEDLSKSEIAATSEKPMAKNISRFLFLGGV IVLACSLDHGLLSRAFIFGVGRRLANRGKRLCSSAGRANYIGSSF" mobile_element complement(28281958..28282012) /note="source:CACAO_M_E12463_F12_scaffold_3 4696 4750" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28282701..28287145 /locus_tag="TCM_015509" /note="dbxref CacaoGD:Thecc1EG015509" mRNA join(28282701..28282823,28283534..28284929, 28286546..28286625,28286717..28287145) /locus_tag="TCM_015509" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02820.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s00740.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:PASA:2:TSA:puevd3b014984t1a2; inference alignment:Newbler:10:TSA:cgbaB_g08990t00001" mRNA join(28282701..28282823,28283534..28284929, 28286552..28286625,28286717..28287123) /locus_tag="TCM_015509" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02820.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s00740.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08990t00001" mobile_element complement(28283285..28283426) /note="source:CACAO_Mariner_E69_scaffold_2 2113 2257" /mobile_element_type="transposon:TIR/Tc1-Mariner" CDS join(28284063..28284929,28286546..28286625, 28286717..28286837) /locus_tag="TCM_015509" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY23702.1" /db_xref="Phytozome:POPTR_0015s00740.1" /db_xref="TAIR:AT5G24500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDH9" /translation="MLCSISTGKSGSNWLDRLRSSKGFPTGDNLDLDHFLTNPNPSDS PITDASNSPNSNSESTHSNDKELQNRKAPPPEVVSSEPAGDKEWFGIMSNVLSELFNM GDQAQTSRFSRKKTSRKQTNPKICIIKTSNVNTSEEQKSSSDSVRKDENIPASTTSLN SKEEAKREWKEEGDDYNVEEEEQEEENGKGERELLGYSRSEVTVIDTSCEVWKVDKLI FRRKNIWKVKDKKGKSRIVGRKKRKAPPPPPPPSYDDNNGGVWNKKRKISSSELRSLK DTSGKESGSPTNHGQNAPGEKGELVCNETPDDLTQVLRKRLPRKSGKGSTSVILIKSI PTGKKNGAKLAKNRLKDTQRL" CDS join(28284063..28284929,28286552..28286625, 28286717..28286837) /locus_tag="TCM_015509" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23701.1" /db_xref="Phytozome:POPTR_0015s00740.2" /db_xref="TAIR:AT5G24500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDH9" /translation="MLCSISTGKSGSNWLDRLRSSKGFPTGDNLDLDHFLTNPNPSDS PITDASNSPNSNSESTHSNDKELQNRKAPPPEVVSSEPAGDKEWFGIMSNVLSELFNM GDQAQTSRFSRKKTSRKQTNPKICIIKTSNVNTSEEQKSSSDSVRKDENIPASTTSLN SKEEAKREWKEEGDDYNVEEEEQEEENGKGERELLGYSRSEVTVIDTSCEVWKVDKLI FRRKNIWKVKDKKGKSRIVGRKKRKAPPPPPPPSYDDNNGGVWNKKRKISSSELRSLK DTSGKESGSPTNHNAPGEKGELVCNETPDDLTQVLRKRLPRKSGKGSTSVILIKSIPT GKKNGAKLAKNRLKDTQRL" gene 28287530..28289381 /locus_tag="TCM_047015" /note="dbxref CacaoGD:Thecc1EG047015" mRNA join(28287530..28287940,28288049..28289381) /locus_tag="TCM_047015" /product="Plastid transcriptionally active 15" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s00750.1" /inference="similar to AA sequence:Phytozome:GSVIVT01038641001" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05972t00001" CDS join(28287664..28287940,28288049..28289319) /locus_tag="TCM_047015" /codon_start=1 /product="Plastid transcriptionally active 15" /protein_id="EOY23703.1" /db_xref="Phytozome:GSVIVT01038641001" /db_xref="TAIR:AT5G54180.1" /translation="MVAAITVLTDSFCLPSSVFLNSHALTYSPPKLQSPHPLYASPTA RPRECFSLINVNTTYRTELRPLTCPQPAKRFLLQCSYLDPPTAFKNETGMLFSLFREI GLNENETDLLLDKNPTLRSTSLDKIRARLLALQSVGINGFALYRLVTKCPSVLIAEEI DSVIGFVHDDLEGKVEPAQLERLFSTTGAGFVLGFDQKVNLLLHHGVPQEKIAHVLNN VNLIKAICSKSVEELERTITFLKPYHGIEIIVRRPAILNYDLDSQLIPKIQFLEELSG GDEDATGTVLRKLPAILSYSLEHMEGHVEFLRSYVGLSDPEIFKIILVFPNMVSASKE RKLRPRIEFLKQCELNSNDIFKFLTRAPLFLALSFEDNLAHKLGFLVKIGYEYRTKEL AVALGAVTRTSCENMQKVIGLFLSYGLSCEDIYAMSKKHPQILQYNPSSLEEKMVYLV EEMGREVRELLTFPAFLGYKLDDRIKHRYEVKKKTVGKRMSLNKLLSVSANRFSTKKK AKSLVND" gene 28291446..28296197 /locus_tag="TCM_047016" /note="dbxref CacaoGD:Thecc1EG047016" mRNA join(28291446..28291579,28291729..28291820, 28291928..28292025,28292544..28292699,28292777..28293450, 28293568..28293647,28293851..28294096,28294199..28294313, 28294401..28294590,28294683..28296197) /locus_tag="TCM_047016" /product="Subtilase family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G66210.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015603t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038642001" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8205t2" CDS join(28291463..28291579,28291729..28291820, 28291928..28292025,28292544..28292699,28292777..28293450, 28293568..28293647,28293851..28294096,28294199..28294313, 28294401..28294590,28294683..28295245) /locus_tag="TCM_047016" /note="paralog of Thecc1EG015603t1" /codon_start=1 /product="Subtilase family protein, putative" /protein_id="EOY23704.1" /db_xref="Phytozome:GSVIVT01038642001" /db_xref="TAIR:AT1G32960.1" /translation="MSLLLHVKNTIIMSFVLVPLLLILNVHYMLPALADSNSNVYIVY MGKRQHPDVERLTRTHHEMLSTVLVSEETSKESMVYSYKHGFSGFAAKMTEAQAQKLS KLPGVVHVTRNGFYKLQTTRSWDYLGLSTNSPSNLLNKSKMGNGVIIGLLDTGIWPES EVFSDEGLGPIPSRWKGVCESGELFDGAKACNRKLIGARYFIRGLQAEYGQPYNTSAN NDYLSPRDPSGHGTHTSSIAGGSFVANVSYYGLGFGTVRGGAPGARLAMYKVCWQLYG GVCSDADVLKGFDEAIHDGVDVLSVSLVADIPLYSDVDQRGSIPIGSFHAVAKGITVV CAAGNAGPRAETVQNTAPWILTVAASTVDRSFPTPIMLGNNQTIMGQAMFTGEDTVFA TLVYPEVSDLMVPRNCESLSSNDDWMAGKVVLCFVSEYNMSLLDDGIWSVKEAGGLGV IVARTPSDYLYSYATRFPCVQVTYETGTQILYYIRSTSNPQVRLSPSRTHVGKPLSTS VAYFSSRGPSSNAPAILKPDIAAPGVKILAASPPDRPTNGAFAFRSGTSMATPHVSGI VALLKSLYPDWSPAAIKSAIVTTALSADQSGGPIFAEGEPSKLADPFDFGGGIVNPNG AADPGLVYDMNTEDYGQYLCAMGYNDSAIFQLTQHPIVCPSKQPSVLDVNLPSITIPS LRKPTILTRTVTNVGPVNSKYKANVEFASGINIAVRPEILIFSSKTKTITFTVMISSA HNVNAGYYFGSLTWTDGGHVVRSPISVRTEVGESFF" gene complement(28295674..28298140) /locus_tag="TCM_015512" /note="dbxref CacaoGD:Thecc1EG015512" mRNA complement(join(28295674..28296086,28296172..28296280, 28296776..28297054,28297134..28297277,28297822..28298140)) /locus_tag="TCM_015512" /product="Plastid-specific 30S ribosomal protein 1" /inference="alignment:exonerate- protein:2:ricco:29866.m000619" /inference="similar to AA sequence:ricco:29866.m000619" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03497t00001" CDS complement(join(28295956..28296086,28296172..28296280, 28296776..28297054,28297134..28297277,28297822..28298121)) /locus_tag="TCM_015512" /note="dbxref ricco:29866.m000619" /codon_start=1 /product="Plastid-specific 30S ribosomal protein 1" /protein_id="EOY23705.1" /db_xref="TAIR:AT5G24490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P19954" /translation="MATALLASSQTSFHHPISVSVSSSSCHSSSASSVSLFTPTKPRI PSLPSYKSSFLNPIGNSFKDIETEPRKSRVCSLTVRMSWDGPLSSVKLIIQGKNLELT DTVKQHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR AEEDAETVYGSIDLVSSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVAVLVEDEVE AVPEQEDDVEAVPEQEDDGLIDEIVRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEE TGEINILYKRKAGGYGLIIPKGNGKAEKLEPVVVDSAKQHSFVE" mobile_element 28298507..28299031 /note="source:CACAO_MITE_S202_scaffold_8 1 545" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(28298882..28299053) /note="source:CACAO_on_E545_scaffold_5 14 198" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 28301460..28307036 /locus_tag="TCM_015513" /note="dbxref CacaoGD:Thecc1EG015513" mRNA join(28301460..28301974,28303014..28303175, 28303293..28303405,28303529..28303684,28304384..28304549, 28304644..28304953,28305107..28305893,28306109..28307036) /locus_tag="TCM_015513" /product="Pseudo-response regulator 5, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400001176" /inference="similar to AA sequence:Phytozome:POPTR_0015s00440.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8219t1" mRNA join(28301632..28301974,28303014..28303175, 28303293..28303423,28303529..28303684,28304384..28304549, 28304644..28304953,28305107..28305893,28306109..28306618) /locus_tag="TCM_015513" /product="Pseudo-response regulator 5, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400001176" /inference="similar to AA sequence:Phytozome:POPTR_0015s00440.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8219t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8219t1" CDS join(28301731..28301974,28303014..28303175, 28303293..28303423,28303529..28303684,28304384..28304549, 28304644..28304953,28305107..28305893,28306109..28306240) /locus_tag="TCM_015513" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pseudo-response regulator 5, putative isoform 2" /protein_id="EOY23707.1" /db_xref="Phytozome:POPTR_0015s00440.1" /db_xref="TAIR:AT5G24470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0PPG8" /translation="MGEVVVSSEEVEKVKSDSESEKENGEFQGNKRKKKPGSSASGEV VKWERFLPRMALRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEMLKGKPHNI DLILTEVDLPSISGFALLTLIMEHEICKSIPVIMMSSQDSISTVYKCMLRGAADYLVK PIRRNELRNLWQHVWRRQSLIVGGISPQDESVGQKKVEATSENNAASNHSSGCLANFQ RTKEQTEKGSDAQSSCTKPDMEAESAHMDNMQEFSRMIQGKSLPSESQKHEAHANFNQ KPLVHEMKTGVDDACQDAYITTMYKGVELESQRRDANISVEAGDAFIDSPREAIDFMG TFNRNCNSSSINSTSKFDSSPHLDLSLRRCNLNVFENHATQERPTLWHPNSSAFTRYT SRVSQPLHSTLTSVRDQKKESGTNSEKMLSNVISEYNSDTPSPTLTSQRSMIPLTTGA TGKWMQTEVPASCTPRRVFPVQVPVKGIRLNNLCNGHNSVISPIFCPQSSSSPVPSPS SANQQEPAFRVNLFRHSSFETNNSGQLYDQLGSNTNKSTNQPLHKLDQKLDSIEDRGH ISPTTDQSANSSFCNGSLSQLNGIAYGSTGASNGNVDQVAVIRAPPESKNDDSFLSPG GNSHRFIQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRQVQADPMH TEAERHYGNSSDG" CDS join(28301731..28301974,28303014..28303175, 28303293..28303405,28303529..28303684,28304384..28304549, 28304644..28304953,28305107..28305893,28306109..28306240) /locus_tag="TCM_015513" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pseudo-response regulator 5, putative isoform 1" /protein_id="EOY23706.1" /db_xref="Phytozome:POPTR_0015s00440.1" /db_xref="TAIR:AT5G24470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0PPG8" /translation="MGEVVVSSEEVEKVKSDSESEKENGEFQGNKRKKKPGSSASGEV VKWERFLPRMALRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEMLKGKPHNI DLILTEVDLPSISGFALLTLIMEHEICKSIPVIMMSSQDSISTVYKCMLRGAADYLVK PIRRNELRNLWQHLIVGGISPQDESVGQKKVEATSENNAASNHSSGCLANFQRTKEQT EKGSDAQSSCTKPDMEAESAHMDNMQEFSRMIQGKSLPSESQKHEAHANFNQKPLVHE MKTGVDDACQDAYITTMYKGVELESQRRDANISVEAGDAFIDSPREAIDFMGTFNRNC NSSSINSTSKFDSSPHLDLSLRRCNLNVFENHATQERPTLWHPNSSAFTRYTSRVSQP LHSTLTSVRDQKKESGTNSEKMLSNVISEYNSDTPSPTLTSQRSMIPLTTGATGKWMQ TEVPASCTPRRVFPVQVPVKGIRLNNLCNGHNSVISPIFCPQSSSSPVPSPSSANQQE PAFRVNLFRHSSFETNNSGQLYDQLGSNTNKSTNQPLHKLDQKLDSIEDRGHISPTTD QSANSSFCNGSLSQLNGIAYGSTGASNGNVDQVAVIRAPPESKNDDSFLSPGGNSHRF IQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRQVQADPMHTEAERH YGNSSDG" gene 28309740..28312295 /locus_tag="TCM_015515" /note="dbxref CacaoGD:Thecc1EG015515" mRNA join(28309740..28310264,28311085..28311156, 28311243..28312295) /locus_tag="TCM_015515" /product="Late embryogenesis abundant hydroxyproline-rich glycoprotein family" /inference="alignment:exonerate-protein:2:frave:gene12453" /inference="similar to AA sequence:frave:gene12453" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1534t5" CDS join(28309785..28310264,28311085..28311156, 28311243..28311377) /locus_tag="TCM_015515" /note="dbxref frave:gene12453" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycoprotein family" /protein_id="EOY23708.1" /db_xref="TAIR:AT5G53730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI03" /translation="MSQVLSKSPKHCAKQGLSIDKSYKKIFFAFSSFFSTVLAFIFLI WLILHPAKPQFSLREADIYQLNLSGPHLLNSSIQLTLLSKNPNKKVGIYYDKLQAYAA YKGQQITVDTSLPPFYQGHEESNLLTASLEGKGLPVAPSFGYEVGRDQTAGRIVLNLK TNRQKASLMNNYNAVKLFNPEQIRAKHPTLDKRREDASRHLWHKINKEKNEVEGERKC QPFICKMLLL" gene complement(28312908..28314520) /locus_tag="TCM_015516" /note="dbxref CacaoGD:Thecc1EG015516" mRNA complement(join(28312908..28312991,28313422..28314520)) /locus_tag="TCM_015516" /product="RING-H2 zinc finger protein RHA2a, putative" /inference="alignment:exonerate-protein:2:frave:gene12452" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400001127" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1204t2" CDS complement(join(28312983..28312991,28313422..28314234)) /locus_tag="TCM_015516" /codon_start=1 /product="RING-H2 zinc finger protein RHA2a, putative" /protein_id="EOY23709.1" /db_xref="Phytozome:PGSC0003DMP400001127" /db_xref="TAIR:AT5G24460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDF2" /translation="MSKPPQSINNAQNNTKSNFYLNKPTATLPDIFLTAISLLFLFSS PKANHTFLPKFLPFPSNPRRFLKIPTMFHSRVPFASPQALSDWLKPRLPSDSLATWGV KPGTKNVHNLWLELSEGETSLVDSFPPLRTVNVVTVRIIGKDNLILIESRQELSDGSV RDRFRPLSEKMKPHETPEEAVTRAVREELGSVVDSGVVRIVPGSYQKKLEERNSVSYP GLPARYILHSVDAWVEGLPEEDFCTEEKEEYEDTDGTRGLEKAVSVRKHYWKWIF" gene 28314181..28314825 /locus_tag="TCM_015517" /note="dbxref CacaoGD:Thecc1EG015517" mRNA 28314181..28314825 /locus_tag="TCM_015517" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" CDS 28314233..28314463 /locus_tag="TCM_015517" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23710.1" /translation="MLLRMMPCCGRGAMFMHKQEEEELQWFDWGSQVHYKEQNWCKRR GLVSLVKVLGNKRWEIVGNLRSDILFHVKPHG" gene complement(28314865..28315929) /locus_tag="TCM_015518" /note="dbxref CacaoGD:Thecc1EG015518" mRNA complement(join(28314865..28315328,28315465..28315929)) /locus_tag="TCM_015518" /product="RING-H2 finger protein ATL2L, putative" /inference="alignment:exonerate-protein:2:frave:gene12452" /inference="similar to AA sequence:ricco:30076.m004453" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8224t2" CDS complement(join(28315219..28315328,28315465..28315915)) /locus_tag="TCM_015518" /note="dbxref ricco:30076.m004453" /codon_start=1 /product="RING-H2 finger protein ATL2L, putative" /protein_id="EOY23711.1" /translation="MAVLSQFLLLGGAFFSFGCRHRDYQVESRPSPSLVPVPVFSMVQ SLKNQLPVMQYSCFVKRKSGACVVDDPTCCIVCMNFVDRSHEVRELGSCYHVFHRDCL DAWIDHGNITCPLCKSKLLPAQGNSSRFGSDPWRKERMIYLFGDDEMMAQKLGNIVML GMAHDRSLGRTCHSLLPTEQMDGSKV" mobile_element 28317213..28317274 /note="source:INTACT178_F162_scaffold_5-int 338 399" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(28325016..28328147) /locus_tag="TCM_015520" /note="dbxref CacaoGD:Thecc1EG015520" mRNA complement(join(28325016..28325666,28326863..28328147)) /locus_tag="TCM_015520" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s00640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017435t2" /inference="similar to AA sequence:ricco:29428.m000322" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:PASA:2:TSA:puevd3b014995t1a2; alternateUTRof:Thecc1EG015520t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc930t3_C2" mRNA complement(join(28325022..28325199,28325521..28325666, 28326863..28328147)) /locus_tag="TCM_015520" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s00640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017435t2" /inference="similar to AA sequence:ricco:29428.m000322" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc930t3_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc930t3_C2" mRNA complement(join(28325639..28326126,28326863..28328147)) /locus_tag="TCM_015520" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s00640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017435t2" /inference="similar to AA sequence:ricco:29428.m000322" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc920t1; alternateUTRof:Thecc1EG015520t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc930t3_C2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc684t10" CDS complement(28326864..28327895) /locus_tag="TCM_015520" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29428.m000322; paralog of Thecc1EG017435t2" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY23712.1" /db_xref="TAIR:AT5G24520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LPV9" /translation="MENSTQESHLRSDNSITYESPCPVYAMAFSSAPSRTSLNHQRIA LGSFIEDYANRVDIISFDPETLSFKTHPTLSFDHPYPPTKLMFQPNRKSPSSSSSDLL ASSGDYLRLWEVRESSIEPFSVLNNSKTSEFCAPLTSFDWNDVDPKRIGTSSIDTTCT IWDIEKGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESP QPDSPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMPVAELERHRASVNAIAWAP QSGRHICSAGDDTQALIWELPTVAGPNGIDPLSMYSAGSEINQLQWSAAQPDWIAIAF SNKMQLLKV" CDS complement(28326864..28327895) /locus_tag="TCM_015520" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29428.m000322; paralog of Thecc1EG017435t2" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY23713.1" /db_xref="TAIR:AT5G24520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LPV9" /translation="MENSTQESHLRSDNSITYESPCPVYAMAFSSAPSRTSLNHQRIA LGSFIEDYANRVDIISFDPETLSFKTHPTLSFDHPYPPTKLMFQPNRKSPSSSSSDLL ASSGDYLRLWEVRESSIEPFSVLNNSKTSEFCAPLTSFDWNDVDPKRIGTSSIDTTCT IWDIEKGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESP QPDSPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMPVAELERHRASVNAIAWAP QSGRHICSAGDDTQALIWELPTVAGPNGIDPLSMYSAGSEINQLQWSAAQPDWIAIAF SNKMQLLKV" CDS complement(28326864..28327895) /locus_tag="TCM_015520" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29428.m000322; paralog of Thecc1EG017435t2" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY23714.1" /db_xref="TAIR:AT5G24520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LPV9" /translation="MENSTQESHLRSDNSITYESPCPVYAMAFSSAPSRTSLNHQRIA LGSFIEDYANRVDIISFDPETLSFKTHPTLSFDHPYPPTKLMFQPNRKSPSSSSSDLL ASSGDYLRLWEVRESSIEPFSVLNNSKTSEFCAPLTSFDWNDVDPKRIGTSSIDTTCT IWDIEKGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESP QPDSPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMPVAELERHRASVNAIAWAP QSGRHICSAGDDTQALIWELPTVAGPNGIDPLSMYSAGSEINQLQWSAAQPDWIAIAF SNKMQLLKV" mobile_element 28331215..28332325 /note="source:INTACT135F_F90_scaffold_2-int 12864 14010" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(28332981..28333348) /note="source:scaffold_3_CACTA_0377 4795 5208" /mobile_element_type="transposon:TIR/CACTA" gene 28337257..28343849 /locus_tag="TCM_015521" /note="dbxref CacaoGD:Thecc1EG015521" mRNA join(28337257..28337941,28338082..28338329, 28342340..28342664,28342869..28343139,28343571..28343849) /locus_tag="TCM_015521" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g40600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015595t2" /inference="similar to AA sequence:ricco:29866.m000626" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08475t00001" CDS join(28337744..28337941,28338082..28338329, 28342340..28342664,28342869..28343111) /locus_tag="TCM_015521" /note="dbxref ricco:29866.m000626; paralog of Thecc1EG015595t2" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein" /protein_id="EOY23715.1" /db_xref="TAIR:AT5G24530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLV0" /translation="METKVLSTGIRYTNLPESYVRPESERPRLSEVLECENVPVIDLG CKDRSQITQQIALACTFYGFFQVINHGVSKEATEGMFQVAHDFFGLPVEEKLKLYSDD PSKTMRLSTSFNVNKEKVHNWRDYLRLHCYPLHKYVPEWPSNPSSFKEIVSHYCVEVR ELGYRLQELISESLGLDKDYIKNVLGEQGQHMAVNYYPPCPQPELTYGLPGHTDPNAL TILLQDLQVAGLQVLKDGKWVAVNPHPNAFVINIGDQLQALSNGKYKSVWHRAIVNAD KPRMSVASFLCPYDHALISPAKPLTEDGSGAVYRDFTYAEYYSKFWSRNLDQEHCLEL FKN" gene complement(28343982..28348322) /locus_tag="TCM_015522" /note="dbxref CacaoGD:Thecc1EG015522" mRNA complement(join(28343982..28345156,28345649..28345713, 28346089..28346399,28347796..28348322)) /locus_tag="TCM_015522" /product="Caffeic acid 3-O-methyltransferase 1" /inference="alignment:exonerate- protein:2:ricco:29672.m000224" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035137t1" /inference="similar to AA sequence:ricco:29672.m000224" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03028t00001" CDS complement(join(28344854..28345156,28345649..28345713, 28346089..28346399,28347796..28348214)) /locus_tag="TCM_015522" /note="dbxref ricco:29672.m000224; paralog of Thecc1EG035137t1" /codon_start=1 /product="Caffeic acid 3-O-methyltransferase 1" /protein_id="EOY23716.1" /db_xref="TAIR:AT5G54160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q00763" /translation="MGSTGETQMTPNQVSDEELNLFAMQLTSASVLPMVLTSAIELDL FEIMAKAGPGAFLSPNELASQLPTKNPDAPVMLDRILRLLASYSVLNCSLRTLPDGKV ERLYSLGPVCKFLTKNEDGVTLSSLSLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGM TAFEYHGTDPRFNKVFNRGMNDHSTTTMRKILETYDGFEGVKTLVDVGGGIGASLSMI ISKHPSIKGINFDLPHVIEDAPAYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHC SKFLKNCYQALPDNGKVIVAECNLPDYPDPSLATKLVVHIDCIMLAHNPGGKERTAKE FEALAKGAGFQGFQVKCCAFGTYIMEFLKTV" mobile_element complement(28353449..28353642) /note="source:CACAO_Mariner_E220_scaffold_9 9005 9205" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(28353460..28353678) /note="source:scaffold_7_CACTA_0779 12698 12883" /mobile_element_type="transposon:TIR/CACTA" gene 28355641..28356727 /locus_tag="TCM_015523" /note="dbxref CacaoGD:Thecc1EG015523" mRNA join(28355641..28355976,28356185..28356271, 28356367..28356727) /locus_tag="TCM_015523" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29652.m000336" /inference="similar to AA sequence:Phytozome:POPTR_0015s00560.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g16193t00001" CDS join(28355662..28355976,28356185..28356271, 28356367..28356498) /locus_tag="TCM_015523" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23717.1" /db_xref="Phytozome:POPTR_0015s00560.1" /db_xref="TAIR:AT5G54150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7MDT0" /translation="MARRRKPIRRKPMGEKEVIEISPSPAVKDKWLQNLKRKQEKEEE DGSPLRPIFCLKKNMDMKRIEEMEDCFILDFNPLDSVDIAMLSATNDGDDVDLSVVAE KGQLACRDYPHSRHLCLQFHFDTTPHERHCHQCYCYVCDSAAPCGNWMTHCHASEHVD DWKFQRKSRLKVRPSKL" gene 28357549..28359510 /locus_tag="TCM_015524" /note="dbxref CacaoGD:Thecc1EG015524" mRNA join(28357549..28357688,28357775..28357886, 28358465..28358563,28358674..28358792,28358873..28359510) /locus_tag="TCM_015524" /product="Nascent polypeptide-associated complex subunit alpha-like protein 2" /inference="alignment:exonerate- protein:2:ricco:29764.m000739" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044679t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038657001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05765t00001" CDS join(28357605..28357688,28357775..28357886, 28358465..28358563,28358674..28358792,28358873..28359223) /locus_tag="TCM_015524" /note="paralog of Thecc1EG044679t1" /codon_start=1 /product="Nascent polypeptide-associated complex subunit alpha-like protein 2" /protein_id="EOY23718.1" /db_xref="Phytozome:GSVIVT01038657001" /db_xref="TAIR:AT3G49470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94JX9" /translation="MSPGPVVEAAQPETEQDPSTEEPQKLPMSEEEAVVEDVKEDEKE DDEDDDEDEDDEDDDKEDGAPVAMLTILWISDLVVAMHANIPLFACVLFGYNAICANG GSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIF GEAKIEDLSSQLQTQAAQQFRMPDMGSVMAKSDTSTAAAGAPADEEEEEIDETGVEPR DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT" gene complement(28359894..28360985) /locus_tag="TCM_015525" /note="dbxref CacaoGD:Thecc1EG015525" mRNA complement(join(28359894..28360336,28360684..28360985)) /locus_tag="TCM_015525" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS complement(join(28360099..28360336,28360684..28360829)) /locus_tag="TCM_015525" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23719.1" /translation="MLNSETAMPQPKIPDFCLGRSTLETDSSISKHDESCTVNQVTVT MLDASIVRLVLGCLGECGLDAIPAKCMALTCLDIQGFWNVKLEGELEDRRLQLLAFKS LWIYEMITDSDEQADDEEYRSSDSE" gene complement(28361776..28363762) /locus_tag="TCM_015526" /note="dbxref CacaoGD:Thecc1EG015526" mRNA complement(join(28361776..28362386,28362495..28362660, 28362776..28362967,28363169..28363762)) /locus_tag="TCM_015526" /product="Peroxidase 5" /inference="alignment:exonerate-protein:2:frave:gene12445" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026820t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s00590.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14183t00001" CDS complement(join(28361974..28362386,28362495..28362660, 28362776..28362967,28363169..28363390)) /locus_tag="TCM_015526" /note="paralog of Thecc1EG026820t1" /codon_start=1 /product="Peroxidase 5" /protein_id="EOY23720.1" /db_xref="Phytozome:POPTR_0015s00590.1" /db_xref="TAIR:AT1G05260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A7QEU4" /translation="MIKMSPRKLTRVFTILAVVLFCQSVHSQLQIGFYRDTCSLVEFI VKEEVTKAFIKENGVVAGLMRMHFHDCFVRGCDGSVLLDSTPSSTAEKDSFANNPSLR GYEVIDNAKARLEAVCKGVVSCADIVAFAARDSIEITGGLGYDVPAGRRDGRTSLASE IIGNLPPPTFNVSQLTQMFAKKGFTQEEMVTLSGGHTIGRSHCTSFSNRLYNFSGTGM QDPSLDPRYAAMLKQQCPQGNKDTNLVVPMNPSSPSITDAGYYVDILANRGLFTSDHT LLTNPATANQVTQNARNPMQWRAKFGAAMVKMGQLEVLTGTAGEIRANCRVING" mobile_element complement(28363773..28363823) /note="source:CACAO_M_S_E18487_F233_scaffold_3 1314 1367" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(28363878..28372150) /locus_tag="TCM_015527" /note="dbxref CacaoGD:Thecc1EG015527" mRNA complement(join(28363878..28365508,28365639..28365816, 28365953..28366114,28366286..28367922,28368849..28369324, 28369549..28369750,28371564..28372150)) /locus_tag="TCM_015527" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene12445" /inference="similar to AA sequence:ricco:29764.m000745" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc940t5" mRNA complement(join(28364083..28364507,28364615..28365508, 28365639..28365816,28365953..28366114,28366286..28367922, 28368849..28369324,28369549..28369574)) /locus_tag="TCM_015527" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene12445" /inference="similar to AA sequence:ricco:29764.m000745" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc940t5; alternateUTRof:Thecc1EG015527t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc940t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8363t2" mRNA complement(join(28364183..28364507,28364615..28365508, 28365639..28365816,28365953..28366114,28366286..28367922, 28368849..28369324,28369519..28369599)) /locus_tag="TCM_015527" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene12445" /inference="similar to AA sequence:ricco:29764.m000745" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8363t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8363t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc940t5" mRNA complement(join(28364479..28364507,28364615..28365508, 28365639..28365816,28365953..28366114,28366346..28367922, 28368849..28369324,28369549..28369578)) /locus_tag="TCM_015527" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate-protein:2:frave:gene12445" /inference="similar to AA sequence:ricco:29764.m000745" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1142t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8363t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc940t5" mRNA complement(join(28364479..28364507,28364615..28365282, 28365469..28365508,28365639..28365816,28365953..28366114, 28366286..28367922,28368849..28369324,28369549..28369578)) /locus_tag="TCM_015527" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene12445" /inference="similar to AA sequence:Phytozome:POPTR_0015s00600.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1172t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8363t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc940t5" mRNA complement(join(28364479..28364507,28364615..28365816, 28365953..28366114,28366286..28367922,28368849..28369324, 28369549..28369578)) /locus_tag="TCM_015527" /product="Uncharacterized protein isoform 6" /inference="alignment:exonerate-protein:2:frave:gene12445" /inference="similar to AA sequence:Phytozome:POPTR_0015s00600.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1142t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8363t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc940t5" mRNA complement(join(28364479..28364507,28364615..28365508, 28365639..28365816,28365953..28367922,28368849..28369324, 28369549..28369578)) /locus_tag="TCM_015527" /product="Uncharacterized protein isoform 7" /inference="alignment:exonerate-protein:2:frave:gene12445" /inference="similar to AA sequence:Phytozome:POPTR_0015s00600.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1142t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8363t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc940t5" CDS complement(join(28364748..28365508,28365639..28365816, 28365953..28366114,28366346..28367922,28368849..28369324, 28369549..28369574)) /locus_tag="TCM_015527" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29764.m000745" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY23725.1" /db_xref="TAIR:AT3G49490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVD9" /translation="MMRPINSHLYTMMGFGSYVGNAHGGGSSNLSALAPPFTVDRSIP KPAATPLVDLGEPLNWLDSNPYTFNSPQPAQLPQLDLEPTPTPSYNQNSDLFEPKTYY PSYVSPPLHVPTFNEQSLPGLDHTAQWGGGLWDWEKGKPAQLGGSFYLKETSVAPSSI YMDHINLGAHPSKSLKTCEETSYNIYSPREDQAGPANIEKLDYNPVLGQNPSFMPVDY LKTSVIGSSSAISEANLQAPPLNLVNCKNNHVQISTPYEKPLRQHGTTLSDSIPSVKS SPGVVIRPPAVGTSSSASNSVSFKNVNTGINATDTNLAGNNRFIVEEPRFLFNFGSKN EFDPIQHSFLLDGNCYMSGESSTSTEKLSTRNMASDNFFGAKSGVNLSRISPDNFSLA FENNEAVIAVENSLESLDHYNPPVDSPCWKGAPASNNSPFGSSEPVAVQLAKKLEACD GSNGLVLKFISSNTANMVKHPSGKAGEILMSDENGNVEDGSMSSLKLPPVSIPSFKEH EPDEAGKAGSHKNKASSACEVKFSDNASEWKKDYVLFDKSVDEVEKASHTSQQCLAEG RLASKNLCRSETGVADLEMKINDVSGCGSSHVSCHAVKHLSCAPSSVEDVSTKHTKFL GKEPVSNSSISVLVDTMQNLSELLLYHCSNEACELREQDVKSLEKVINNLDTCMSKNI GQETLLSELHKGTSTGSPQVAAIDVLSQHTQVKRKHFGKKDEKCSEFVSVRSGTDIKV KNDKMTQAIKKVLIENFHEKEETHPQVLLYKNLWLEAEAALCSINYMARYNNMKIEIE KCKLDTEKDLSEDTPDEDKISRSKLSADLDTNKKLTAIAESAPTLDVSNQNFPIASSS NHADDVTARFHVLKHRLNNSYSVHTRDADELSSSKLSLDSDAVDKLATEVKDSSTSSL QTQDSPVPGTACHTDDVEASIMTRLHILKSRGNVDLDSNEMEQKPLPEVVDLGFAGKK KQIPIDEDTADDGVLGFNLESVSQNQVVDYAGEQSVVKDFHLCVKHDCTIQSPKSTRL GNQLSAGWYDSCSSDWEHVLKEELSGQNS" CDS complement(join(28364748..28365282,28365469..28365508, 28365639..28365816,28365953..28366114,28366286..28367922, 28368849..28369324,28369549..28369574)) /locus_tag="TCM_015527" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY23722.1" /db_xref="Phytozome:POPTR_0015s00600.1" /db_xref="TAIR:AT3G49490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVD9" /translation="MMRPINSHLYTMMGFGSYVGNAHGGGSSNLSALAPPFTVDRSIP KPAATPLVDLGEPLNWLDSNPYTFNSPQPAQLPQLDLEPTPTPSYNQNSDLFEPKTYY PSYVSPPLHVPTFNEQSLPGLDHTAQWGGGLWDWEKGKPAQLGGSFYLKETSVAPSSI YMDHINLGAHPSKSLKTCEETSYNIYSPREDQAGPANIEKLDYNPVLGQNPSFMPVDY LKTSVIGSSSAISEANLQAPPLNLVNCKNNHVQISTPYEKPLRQHGTTLSDSIPSVKS SPGVVIRPPAVGTSSSASNSVSFKNVNTGINATDTNLAGNNRFIVEEPRFLFNFGSKN EFDPIQHSFLLDGNCYMSGESSTSTEKLSTRNMASDNFFGAKSGVNLSRISPDNFSLA FENNEAVIAVENSLESLDHYNPPVDSPCWKGAPASNNSPFGSSEPVAVQLAKKLEACD GSNGLVLKFISSNTANMVKHPSGKAGEILMSDENGNVEDGSMSSLKLPPVSIPSFKEH EPDEAGKAGSHKNKASSACEVKFSDNASEWKKDYVLFDKSVDEVEKASHTSQQCLAEG RLASKNLCRSETGVADLEMKINDVSGCGSSHVSCHAVKHLSCAPSSVEDVSTKHTKFL GKEPVSNSSISVLVDTMQNLSELLLYHCSNEACELREQDVKSLEKVINNLDTCMSKNI GQETLLSELHKVWFPMSKKNGQESLLSELHKGTSTGSPQVAAIDVLSQHTQVKRKHFG KKDEKCSEFVSVRSGTDIKVKNDKMTQAIKKVLIENFHEKEETHPQVLLYKNLWLEAE AALCSINYMARYNNMKIEIEKCKLDTEKDLSEDTPDEDKISRDADELSSSKLSLDSDA VDKLATEVKDSSTSSLQTQDSPVPGTACHTDDVEASIMTRLHILKSRGNVDLDSNEME QKPLPEVVDLGFAGKKKQIPIDEDTADDGVLGFNLESVSQNQVVDYAGEQSVVKDFHL CVKHDCTIQSPKSTRLGNQLSAGWYDSCSSDWEHVLKEELSGQNS" CDS complement(join(28364748..28365508,28365639..28365816, 28365953..28366114,28366286..28367922,28368849..28369324, 28369549..28369574)) /locus_tag="TCM_015527" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29764.m000745" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23721.1" /db_xref="TAIR:AT3G49490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVD9" /translation="MMRPINSHLYTMMGFGSYVGNAHGGGSSNLSALAPPFTVDRSIP KPAATPLVDLGEPLNWLDSNPYTFNSPQPAQLPQLDLEPTPTPSYNQNSDLFEPKTYY PSYVSPPLHVPTFNEQSLPGLDHTAQWGGGLWDWEKGKPAQLGGSFYLKETSVAPSSI YMDHINLGAHPSKSLKTCEETSYNIYSPREDQAGPANIEKLDYNPVLGQNPSFMPVDY LKTSVIGSSSAISEANLQAPPLNLVNCKNNHVQISTPYEKPLRQHGTTLSDSIPSVKS SPGVVIRPPAVGTSSSASNSVSFKNVNTGINATDTNLAGNNRFIVEEPRFLFNFGSKN EFDPIQHSFLLDGNCYMSGESSTSTEKLSTRNMASDNFFGAKSGVNLSRISPDNFSLA FENNEAVIAVENSLESLDHYNPPVDSPCWKGAPASNNSPFGSSEPVAVQLAKKLEACD GSNGLVLKFISSNTANMVKHPSGKAGEILMSDENGNVEDGSMSSLKLPPVSIPSFKEH EPDEAGKAGSHKNKASSACEVKFSDNASEWKKDYVLFDKSVDEVEKASHTSQQCLAEG RLASKNLCRSETGVADLEMKINDVSGCGSSHVSCHAVKHLSCAPSSVEDVSTKHTKFL GKEPVSNSSISVLVDTMQNLSELLLYHCSNEACELREQDVKSLEKVINNLDTCMSKNI GQETLLSELHKVWFPMSKKNGQESLLSELHKGTSTGSPQVAAIDVLSQHTQVKRKHFG KKDEKCSEFVSVRSGTDIKVKNDKMTQAIKKVLIENFHEKEETHPQVLLYKNLWLEAE AALCSINYMARYNNMKIEIEKCKLDTEKDLSEDTPDEDKISRSKLSADLDTNKKLTAI AESAPTLDVSNQNFPIASSSNHADDVTARFHVLKHRLNNSYSVHTRDADELSSSKLSL DSDAVDKLATEVKDSSTSSLQTQDSPVPGTACHTDDVEASIMTRLHILKSRGNVDLDS NEMEQKPLPEVVDLGFAGKKKQIPIDEDTADDGVLGFNLESVSQNQVVDYAGEQSVVK DFHLCVKHDCTIQSPKSTRLGNQLSAGWYDSCSSDWEHVLKEELSGQNS" CDS complement(join(28364748..28365508,28365639..28365816, 28365953..28366114,28366286..28367922,28368849..28369324, 28369549..28369574)) /locus_tag="TCM_015527" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29764.m000745" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23724.1" /db_xref="TAIR:AT3G49490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVD9" /translation="MMRPINSHLYTMMGFGSYVGNAHGGGSSNLSALAPPFTVDRSIP KPAATPLVDLGEPLNWLDSNPYTFNSPQPAQLPQLDLEPTPTPSYNQNSDLFEPKTYY PSYVSPPLHVPTFNEQSLPGLDHTAQWGGGLWDWEKGKPAQLGGSFYLKETSVAPSSI YMDHINLGAHPSKSLKTCEETSYNIYSPREDQAGPANIEKLDYNPVLGQNPSFMPVDY LKTSVIGSSSAISEANLQAPPLNLVNCKNNHVQISTPYEKPLRQHGTTLSDSIPSVKS SPGVVIRPPAVGTSSSASNSVSFKNVNTGINATDTNLAGNNRFIVEEPRFLFNFGSKN EFDPIQHSFLLDGNCYMSGESSTSTEKLSTRNMASDNFFGAKSGVNLSRISPDNFSLA FENNEAVIAVENSLESLDHYNPPVDSPCWKGAPASNNSPFGSSEPVAVQLAKKLEACD GSNGLVLKFISSNTANMVKHPSGKAGEILMSDENGNVEDGSMSSLKLPPVSIPSFKEH EPDEAGKAGSHKNKASSACEVKFSDNASEWKKDYVLFDKSVDEVEKASHTSQQCLAEG RLASKNLCRSETGVADLEMKINDVSGCGSSHVSCHAVKHLSCAPSSVEDVSTKHTKFL GKEPVSNSSISVLVDTMQNLSELLLYHCSNEACELREQDVKSLEKVINNLDTCMSKNI GQETLLSELHKVWFPMSKKNGQESLLSELHKGTSTGSPQVAAIDVLSQHTQVKRKHFG KKDEKCSEFVSVRSGTDIKVKNDKMTQAIKKVLIENFHEKEETHPQVLLYKNLWLEAE AALCSINYMARYNNMKIEIEKCKLDTEKDLSEDTPDEDKISRSKLSADLDTNKKLTAI AESAPTLDVSNQNFPIASSSNHADDVTARFHVLKHRLNNSYSVHTRDADELSSSKLSL DSDAVDKLATEVKDSSTSSLQTQDSPVPGTACHTDDVEASIMTRLHILKSRGNVDLDS NEMEQKPLPEVVDLGFAGKKKQIPIDEDTADDGVLGFNLESVSQNQVVDYAGEQSVVK DFHLCVKHDCTIQSPKSTRLGNQLSAGWYDSCSSDWEHVLKEELSGQNS" CDS complement(join(28364748..28365508,28365639..28365816, 28365953..28366114,28366286..28367922,28368849..28369317)) /locus_tag="TCM_015527" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29764.m000745" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY23723.1" /db_xref="TAIR:AT3G49490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVD9" /translation="MMGFGSYVGNAHGGGSSNLSALAPPFTVDRSIPKPAATPLVDLG EPLNWLDSNPYTFNSPQPAQLPQLDLEPTPTPSYNQNSDLFEPKTYYPSYVSPPLHVP TFNEQSLPGLDHTAQWGGGLWDWEKGKPAQLGGSFYLKETSVAPSSIYMDHINLGAHP SKSLKTCEETSYNIYSPREDQAGPANIEKLDYNPVLGQNPSFMPVDYLKTSVIGSSSA ISEANLQAPPLNLVNCKNNHVQISTPYEKPLRQHGTTLSDSIPSVKSSPGVVIRPPAV GTSSSASNSVSFKNVNTGINATDTNLAGNNRFIVEEPRFLFNFGSKNEFDPIQHSFLL DGNCYMSGESSTSTEKLSTRNMASDNFFGAKSGVNLSRISPDNFSLAFENNEAVIAVE NSLESLDHYNPPVDSPCWKGAPASNNSPFGSSEPVAVQLAKKLEACDGSNGLVLKFIS SNTANMVKHPSGKAGEILMSDENGNVEDGSMSSLKLPPVSIPSFKEHEPDEAGKAGSH KNKASSACEVKFSDNASEWKKDYVLFDKSVDEVEKASHTSQQCLAEGRLASKNLCRSE TGVADLEMKINDVSGCGSSHVSCHAVKHLSCAPSSVEDVSTKHTKFLGKEPVSNSSIS VLVDTMQNLSELLLYHCSNEACELREQDVKSLEKVINNLDTCMSKNIGQETLLSELHK VWFPMSKKNGQESLLSELHKGTSTGSPQVAAIDVLSQHTQVKRKHFGKKDEKCSEFVS VRSGTDIKVKNDKMTQAIKKVLIENFHEKEETHPQVLLYKNLWLEAEAALCSINYMAR YNNMKIEIEKCKLDTEKDLSEDTPDEDKISRSKLSADLDTNKKLTAIAESAPTLDVSN QNFPIASSSNHADDVTARFHVLKHRLNNSYSVHTRDADELSSSKLSLDSDAVDKLATE VKDSSTSSLQTQDSPVPGTACHTDDVEASIMTRLHILKSRGNVDLDSNEMEQKPLPEV VDLGFAGKKKQIPIDEDTADDGVLGFNLESVSQNQVVDYAGEQSVVKDFHLCVKHDCT IQSPKSTRLGNQLSAGWYDSCSSDWEHVLKEELSGQNS" mRNA complement(join(<28365066..28365510,28366353..28367922, 28368849..28369324,28369519..28369766)) /locus_tag="TCM_015527" /product="Uncharacterized protein isoform 8" /inference="alignment:exonerate-protein:2:frave:gene12445" /note="transcript variant 8; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is weak, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1144t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8363t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc940t5" CDS complement(join(<28365066..28365510,28366353..28367922, 28368849..28369317)) /locus_tag="TCM_015527" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 8" /protein_id="EOY23728.1" /translation="MMGFGSYVGNAHGGGSSNLSALAPPFTVDRSIPKPAATPLVDLG EPLNWLDSNPYTFNSPQPAQLPQLDLEPTPTPSYNQNSDLFEPKTYYPSYVSPPLHVP TFNEQSLPGLDHTAQWGGGLWDWEKGKPAQLGGSFYLKETSVAPSSIYMDHINLGAHP SKSLKTCEETSYNIYSPREDQAGPANIEKLDYNPVLGQNPSFMPVDYLKTSVIGSSSA ISEANLQAPPLNLVNCKNNHVQISTPYEKPLRQHGTTLSDSIPSVKSSPGVVIRPPAV GTSSSASNSVSFKNVNTGINATDTNLAGNNRFIVEEPRFLFNFGSKNEFDPIQHSFLL DGNCYMSGESSTSTEKLSTRNMASDNFFGAKSGVNLSRISPDNFSLAFENNEAVIAVE NSLESLDHYNPPVDSPCWKGAPASNNSPFGSSEPVAVQLAKKLEACDGSNGLVLKFIS SNTANMVKHPSGKAGEILMSDENGNVEDGSMSSLKLPPVSIPSFKEHEPDEAGKAGSH KNKASSACEVKFSDNASEWKKDYVLFDKSVDEVEKASHTSQQCLAEGRLASKNLCRSE TGVADLEMKINDVSGCGSSHVSCHAVKHLSCAPSSVEDVSTKHTKFLGKEPVSNSSIS VLVDTMQNLSELLLYHCSNEACELREQDVKSLEKVINNLDTCMSKNIGQETLLSELDL SEDTPDEDKISRSKLSADLDTNKKLTAIAESAPTLDVSNQNFPIASSSNHADDVTARF HVLKHRLNNSYSVHTRDADELSSSKLSLDSDAVDKLATEVKDSSTSSLQTQDSPVPGT ACHTDDVEASIMTRLHILKSRGNVDLDSNE" CDS complement(join(28365634..28365816,28365953..28366114, 28366286..28367922,28368849..28369324,28369549..28369574)) /locus_tag="TCM_015527" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY23726.1" /db_xref="Phytozome:POPTR_0015s00600.1" /db_xref="TAIR:AT3G49490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVD9" /translation="MMRPINSHLYTMMGFGSYVGNAHGGGSSNLSALAPPFTVDRSIP KPAATPLVDLGEPLNWLDSNPYTFNSPQPAQLPQLDLEPTPTPSYNQNSDLFEPKTYY PSYVSPPLHVPTFNEQSLPGLDHTAQWGGGLWDWEKGKPAQLGGSFYLKETSVAPSSI YMDHINLGAHPSKSLKTCEETSYNIYSPREDQAGPANIEKLDYNPVLGQNPSFMPVDY LKTSVIGSSSAISEANLQAPPLNLVNCKNNHVQISTPYEKPLRQHGTTLSDSIPSVKS SPGVVIRPPAVGTSSSASNSVSFKNVNTGINATDTNLAGNNRFIVEEPRFLFNFGSKN EFDPIQHSFLLDGNCYMSGESSTSTEKLSTRNMASDNFFGAKSGVNLSRISPDNFSLA FENNEAVIAVENSLESLDHYNPPVDSPCWKGAPASNNSPFGSSEPVAVQLAKKLEACD GSNGLVLKFISSNTANMVKHPSGKAGEILMSDENGNVEDGSMSSLKLPPVSIPSFKEH EPDEAGKAGSHKNKASSACEVKFSDNASEWKKDYVLFDKSVDEVEKASHTSQQCLAEG RLASKNLCRSETGVADLEMKINDVSGCGSSHVSCHAVKHLSCAPSSVEDVSTKHTKFL GKEPVSNSSISVLVDTMQNLSELLLYHCSNEACELREQDVKSLEKVINNLDTCMSKNI GQETLLSELHKVWFPMSKKNGQESLLSELHKGTSTGSPQVAAIDVLSQHTQVKRKHFG KKDEKCSEFVSVRSGTDIKVKNDKMTQAIKKVLIENFHEKEETHPQVLLYKNLWLEAE AALCSINYMARYNNMKIEIEKCKLDTEKG" CDS complement(join(28366139..28367922,28368849..28369324, 28369549..28369574)) /locus_tag="TCM_015527" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 7" /protein_id="EOY23727.1" /db_xref="Phytozome:POPTR_0015s00600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVD9" /translation="MMRPINSHLYTMMGFGSYVGNAHGGGSSNLSALAPPFTVDRSIP KPAATPLVDLGEPLNWLDSNPYTFNSPQPAQLPQLDLEPTPTPSYNQNSDLFEPKTYY PSYVSPPLHVPTFNEQSLPGLDHTAQWGGGLWDWEKGKPAQLGGSFYLKETSVAPSSI YMDHINLGAHPSKSLKTCEETSYNIYSPREDQAGPANIEKLDYNPVLGQNPSFMPVDY LKTSVIGSSSAISEANLQAPPLNLVNCKNNHVQISTPYEKPLRQHGTTLSDSIPSVKS SPGVVIRPPAVGTSSSASNSVSFKNVNTGINATDTNLAGNNRFIVEEPRFLFNFGSKN EFDPIQHSFLLDGNCYMSGESSTSTEKLSTRNMASDNFFGAKSGVNLSRISPDNFSLA FENNEAVIAVENSLESLDHYNPPVDSPCWKGAPASNNSPFGSSEPVAVQLAKKLEACD GSNGLVLKFISSNTANMVKHPSGKAGEILMSDENGNVEDGSMSSLKLPPVSIPSFKEH EPDEAGKAGSHKNKASSACEVKFSDNASEWKKDYVLFDKSVDEVEKASHTSQQCLAEG RLASKNLCRSETGVADLEMKINDVSGCGSSHVSCHAVKHLSCAPSSVEDVSTKHTKFL GKEPVSNSSISVLVDTMQNLSELLLYHCSNEACELREQDVKSLEKVINNLDTCMSKNI GQETLLSELHKVWFPMSKKNGQESLLSELHKVWLPVFILFVLFNCCVIISRNFEMLNC VSLCYYVYSFVTLSWKFFSGL" gene complement(28373140..28374474) /locus_tag="TCM_015528" /note="dbxref CacaoGD:Thecc1EG015528" mRNA complement(join(28373140..28373624,28374296..28374474)) /locus_tag="TCM_015528" /product="Heavy metal transport/detoxification superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s00730.1" /inference="similar to AA sequence:ricco:29764.m000749" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8282t1" CDS complement(join(28373347..28373624,28374296..28374419)) /locus_tag="TCM_015528" /note="dbxref ricco:29764.m000749" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein" /protein_id="EOY23729.1" /db_xref="TAIR:AT4G27590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDG6" /translation="MANMQIVVASKNVEPQYVEMMVPLYSYGCERKVKKTLSHLKGIY SVTVDYNQQKVTVWGICNKFDVLSTMRSKRKEARFWKPEDNIEMEEAQPSSPPPSLRP KGSSKPSLALMKARSLSWKAWKKVFTRSYSF" gene complement(28377703..28380095) /locus_tag="TCM_015529" /note="dbxref CacaoGD:Thecc1EG015529" mRNA complement(join(28377703..28378337,28378961..28379051, 28379181..28379353,28379470..28379647,28379806..28380095)) /locus_tag="TCM_015529" /product="Heavy metal transport/detoxification domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s00740.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s00740.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9482t1" CDS complement(join(28377883..28378337,28378961..28379051, 28379181..28379353,28379470..28379647,28379806..28379826)) /locus_tag="TCM_015529" /codon_start=1 /product="Heavy metal transport/detoxification domain-containing protein" /protein_id="EOY23730.1" /db_xref="Phytozome:POPTR_0012s00740.1" /db_xref="TAIR:AT5G24580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLU5" /translation="MGEEAKQEQAAAEAQPKEKKEEKAGEKPADEKKEEPPPPPPPFV LFVDLHCVGCAKKIEKSIMKIRGVEGVAIDMAQNQVTIKGIVEPQAICDKIMKKTKRR AKVLSPLPAAEGEPLPEVVTSQVSGLTTVELNVDMHCQACAEQLKKKILKMRGVQSAA TEHSTGKVTVTGTMDANKLVDYVYRRTKKQARIVPQPEPEPQPEPEKKEEKKEGEEKP AEEAKPEVNAEKKEEEPPEEAKKEEAENKGGKEVEKKEGAEENNIIINEEESMKRMIY YYQPLYVIERMPPPPQLFSDENPNACCIS" gene 28380342..28381635 /locus_tag="TCM_015531" /note="dbxref CacaoGD:Thecc1EG015531" mRNA 28380342..28381635 /locus_tag="TCM_015531" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.89 coverage" CDS 28381347..28381562 /locus_tag="TCM_015531" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23731.1" /translation="MYTVLPNLPTRRIDLVYFLLFHPIQKPNHKRLLEGDSKAYPAPY IGLVSRVDREKNIEELGPKGWIHFSPM" gene complement(28382996..28387179) /locus_tag="TCM_015532" /note="dbxref CacaoGD:Thecc1EG015532" mRNA complement(join(28382996..28384110,28384709..28384837, 28385043..28385357,28386453..28386578,28386692..28387179)) /locus_tag="TCM_015532" /product="IAA-leucine-resistant-like 3" /inference="alignment:exonerate- protein:2:ricco:29764.m000755" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022797t1" /inference="similar to AA sequence:ricco:29764.m000755" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01876t00002" CDS complement(join(28383721..28384110,28384709..28384837, 28385043..28385357,28386453..28386578,28386692..28387039)) /locus_tag="TCM_015532" /note="dbxref ricco:29764.m000755; paralog of Thecc1EG022797t1" /codon_start=1 /product="IAA-leucine-resistant-like 3" /protein_id="EOY23732.1" /db_xref="TAIR:AT5G54140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XUA8" /translation="MAAITTWIAHVFLSVLFSLAYLSVIRGRLDQDYRDQLLSSAQKD KDWLVSIRRQIHENPELCFQEHNTSALIRQQLDQIGIPYSYPIAGTGIVAQIGSGSKP VVALRADMDALPLQELVEWEHKSKIDGKMHACGHDAHTTMLLGAAKLLNQRKDRLKGT ARLLFQPAEEGGAGASHMIREGALGDAEAIFGMHIDNGSPTGSITLVPGPVLAATCFF EAKIEGVGGHAAGPHSTVDPIVAASFAILALQQLTSREADPLHSQVLSVTLIRGGSAF NTIPPYVEFGGTLRSLTTDGLHKLQQRLKEVIKGQAAVHRCNASIDMKEEEFPPYPAV FNDDSLHQHVQKVGRLLLGPENVKVGKKVMAGEDFSFYQELIPGFMLSIGIRNEGVGS IHPPHSPYFFIDEDALPIGAALYTALAELYLNENEHSILHQIF" mobile_element 28387900..28396280 /note="source:scaffold_3_CACTA_0396 1 8381" /mobile_element_type="transposon:TIR/CACTA" gene complement(28394366..28399846) /locus_tag="TCM_015534" /note="dbxref CacaoGD:Thecc1EG015534" mRNA complement(join(28394366..28394471,28397481..28397724, 28398174..28398473,28399041..28399166,28399260..28399846)) /locus_tag="TCM_015534" /product="IAA-amino acid hydrolase ILR1-like 5, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015532t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s00750.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02490t00001" CDS complement(join(28397569..28397724,28398174..28398473, 28399041..28399166,28399260..28399433)) /locus_tag="TCM_015534" /note="paralog of Thecc1EG015532t1" /codon_start=1 /product="IAA-amino acid hydrolase ILR1-like 5, putative" /protein_id="EOY23733.1" /db_xref="Phytozome:POPTR_0012s00750.1" /db_xref="TAIR:AT5G54140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XUA8" /translation="MKTPNSAPKNSTPVLLSANNSINLVSLPVARTGIVAHIGSGSKP VVALQADMDALPIQELVEWEHKGKIDGKMHACGYDAYTTMLLGAAKLLNQRKNSLKGT VRLLFQPAEETSADASQMIRDGVEAIFGMHIDCTIPTRSIALVSGPLLVVVSFFEAKI GVGGRAAKPHYSIDPILAASFVILALQQLISREVDPLHSLVLFVTCIRGGFTFNVIPS YVEFGDTMRSLTIEGLHKLQQRFKEVYNNTQPF" mobile_element 28400059..28400108 /note="source:CACAO_Mutator_E1149_scaffold_5 4718 4767" /mobile_element_type="transposon:TIR/Mutator" gene complement(28400100..28403316) /locus_tag="TCM_015535" /note="dbxref CacaoGD:Thecc1EG015535" mRNA complement(join(28400100..28400965,28401222..28401572, 28401646..28401951,28402320..28403316)) /locus_tag="TCM_015535" /product="NAC domain class transcription factor, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038666001" /inference="similar to AA sequence:frave:gene12442" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:PASA:2:TSA:puevd3b015009t1a2; inference alignment:Newbler:10:TSA:cgbaL_g09231t00001" mobile_element complement(28400109..28400122) /note="source:CACAO_PIF_E144_scaffold_10 5985 6049" /mobile_element_type="transposon:TIR/PIF-Harbinger" mRNA complement(join(28400125..28400510,28400594..28400965, 28401222..28401572,28401646..28401951,28402320..28403316)) /locus_tag="TCM_015535" /product="NAC domain class transcription factor, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038666001" /inference="similar to AA sequence:frave:gene12442" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09231t00001" CDS complement(join(28400256..28400510,28400594..28400965, 28401222..28401572,28401646..28401951,28402320..28402766)) /locus_tag="TCM_015535" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene12442" /codon_start=1 /product="NAC domain class transcription factor, putative isoform 1" /protein_id="EOY23734.1" /db_xref="TAIR:AT3G49530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZJ91" /translation="MAALSLNSLPVGFRFRPTDEELIDFYLRSKINGNRTDEVGVIRE IDVCKWEPWDLPDLSAIATRDPEWFFFCPLDRKYPNGNRLNRATEAGYWKATGKDRKI KSGSSLIGMKKTLVFYTGRAPRGKRTNWVMHEYRTTLDELDGTKPGQNAFVICRLFKK DDETIEDINGDEVDPALLTPAEDMQSELVVPQDSPVVEGEAEKLPVSSETYPVGLPNE VIFNAVAPILECNSIDYKAYGVTGQVADIAPAEVDPIVEALSQFYDPMPDSLYCKLFS PLHSQIEAEQAPWMFNHVGNSFSGVVIEHGTNENDADISDFLNDILKNPDECCSDDSG SQKNSTIESETPRAMAIGKDGSGSESDAEVAQVLLGTETANRGGAPLEIKATAQDCTI LNPKQDVNFSGTGPFFNVLNSNGELSNTTCNVDNAITGIRIRSRTARSQPDTENSMTQ GNAPRRIRLQCQFQVGPLYCGNAMNDWSSEEKEDNSKPVFKEEVKVVEEDITVGGTMD EPQEISLSGSSKNSILRSKSIVSVCKEIQSRCLKKFSARSSHKRFAVIFRVAVMSILF IILVSSLNVL" CDS complement(join(28400579..28400965,28401222..28401572, 28401646..28401951,28402320..28402766)) /locus_tag="TCM_015535" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene12442" /codon_start=1 /product="NAC domain class transcription factor, putative isoform 2" /protein_id="EOY23735.1" /db_xref="TAIR:AT3G49530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDH0" /translation="MAALSLNSLPVGFRFRPTDEELIDFYLRSKINGNRTDEVGVIRE IDVCKWEPWDLPDLSAIATRDPEWFFFCPLDRKYPNGNRLNRATEAGYWKATGKDRKI KSGSSLIGMKKTLVFYTGRAPRGKRTNWVMHEYRTTLDELDGTKPGQNAFVICRLFKK DDETIEDINGDEVDPALLTPAEDMQSELVVPQDSPVVEGEAEKLPVSSETYPVGLPNE VIFNAVAPILECNSIDYKAYGVTGQVADIAPAEVDPIVEALSQFYDPMPDSLYCKLFS PLHSQIEAEQAPWMFNHVGNSFSGVVIEHGTNENDADISDFLNDILKNPDECCSDDSG SQKNSTIESETPRAMAIGKDGSGSESDAEVAQVLLGTETANRGGAPLEIKATAQDCTI LNPKQDVNFSGTGPFFNVLNSNGELSNTTCNVDNAITGIRIRSRTARSQPDTENSMTQ GNAPRRIRLQCQFQVGPLYCGNAMNDWSSEEKEDNSKPVFKEVRSL" gene complement(28404683..28409311) /locus_tag="TCM_015537" /note="dbxref CacaoGD:Thecc1EG015537" mRNA complement(join(28404683..28405376,28405758..28405865, 28405972..28406082,28406755..28406880,28407004..28407112, 28407214..28407290,28407378..28407598,28408362..28408467, 28408574..28408678,28408778..28409311)) /locus_tag="TCM_015537" /product="Calcium-binding endonuclease/exonuclease/phosphatase family" /inference="alignment:exonerate- protein:2:TAIR:AT5G54130.2.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005006t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s00770.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1393t1" CDS complement(join(28405158..28405376,28405758..28405865, 28405972..28406082,28406755..28406880,28407004..28407112, 28407214..28407290,28407378..28407598,28408362..28408467, 28408574..28408678,28408778..28408933)) /locus_tag="TCM_015537" /note="paralog of Thecc1EG005006t1" /codon_start=1 /product="Calcium-binding endonuclease/exonuclease/phosphatase family" /protein_id="EOY23736.1" /db_xref="Phytozome:POPTR_0012s00770.1" /db_xref="TAIR:AT5G54130.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GUH8" /translation="MRKDRRTKTKGRVSRIGSYAIASSMRDHPHQPCITCTTFNILAP IYKRLSHKDQNCRESDYRAYWLARNQRILDSLLYERSSIICLQEFWVGNEELVNMYEK RLGDAGYLNFKLGRTNNRGDGLLTAVHKDYFRVINYRELLFNDCGDRVAQLLHVELAT PASQYRNNDTCQEILIVNTHLLFPHDSSLCIVRLHQVYKILQHVESYQKEYKLNPLPI ILCGDWNGSKRGHVYKFLRSQGFESSYDTAHQYTDADAHKWVSHLNHRGNVCGVDFIW LLNPNRYRKLLKTSWSEAVFGMFKNQLRKASLTEDDAFAFLKADNDGDYVTYPGFCEA LRQLNITGHRHGLSVEETKDLWVQADIDGNGVVDYKEFQQRIWKPTWSEHRDSNESVD GKEQAIGFSVKNAVLFPPEVEKGRWPDNYSLSDHARLTVVFSPIRMPCSQLTS" gene 28412438..28413137 /locus_tag="TCM_015538" /note="dbxref CacaoGD:Thecc1EG015538" mRNA 28412438..28413137 /locus_tag="TCM_015538" /product="Ovate family protein 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s00660.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s00660.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15787t00001" CDS 28412543..28412902 /locus_tag="TCM_015538" /codon_start=1 /product="Ovate family protein 5" /protein_id="EOY23737.1" /db_xref="Phytozome:POPTR_0015s00660.1" /translation="MIYIIFGELAMHGFAGGMDGFEELNKMERKKRRLKRHDRISFSA TLPGDGSGVFAGSLCVVKLSKDPFSDIRESILDMIDDAGVRDWNTMEELVYCYIALNS PEVHEIIVNAFLSLCYS" gene complement(28413539..28417198) /locus_tag="TCM_015539" /note="dbxref CacaoGD:Thecc1EG015539" mRNA complement(join(28413539..28414001,28414155..28414306, 28414427..28414585,28414699..28414933,28415027..28415143, 28416343..28416405,28416553..28417198)) /locus_tag="TCM_015539" /product="Nodulin MtN21 /EamA-like transporter family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30154.m001117" /inference="similar to AA sequence:Phytozome:POPTR_0012s00780.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8327t1" CDS complement(join(28413770..28414001,28414155..28414306, 28414427..28414585,28414699..28414933,28415027..28415143, 28416343..28416405,28416553..28416755)) /locus_tag="TCM_015539" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein, putative" /protein_id="EOY23738.1" /db_xref="Phytozome:POPTR_0012s00780.1" /db_xref="TAIR:AT5G07050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I280" /translation="MAVMGTVRKWLGWSQMVASMLAVQVFATGQQLLSKVILSQGTFI FALMAYRHLVAALCVAPFAFFLERGNSKKLTWSTWFWLFINALTGITAAMGLFYYGLR DTTATYSTNFLNIIPIVTFVFSIVFRIEKLGLGTRAGKIKIVGAILCVGGALTTCLYK GKAFYLVHDHNFHRPAAMNVSKSHWTRGTFMLIGSCLCYATWYILQVKLLKVFPSKYR ATLITCIMASIQSAALGLCLDRRKAAWRLEWNLQLVTIVYSGALSTAATFCLLALSIA KRGPTYAPMFNPLALIFVAISESLVLGEKMRLGIVLGTVMIIVGLYSFLWGRRKETKC LPQPDAGAEELAKTGPEFGEMQLKTIVLQTNTSPVKSVYAMEEGALKDTVEL" gene complement(28417452..28419152) /locus_tag="TCM_015540" /note="dbxref CacaoGD:Thecc1EG015540" mRNA complement(join(28417452..28417843,28418693..28419152)) /locus_tag="TCM_015540" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage" CDS complement(join(28417476..28417843,28418693..28418900)) /locus_tag="TCM_015540" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23739.1" /translation="MAKSSWHSSGRLTRTKPGFDLRLVLASGLVENEAKIQVEMLEVT NSLPRGPSTSITLAWTFIFTHSGFHDAIYDPFEYLLYLFKERKWKVTDGLSSFLYVTR KYSSHFYNSRRPGTIKKGVGLPLLAGVASRPEFISKTRINPDGFGINKSKTLVKRKKK NHWKTTQSICGKLCQSKWTSIRKADGLPFAF" gene 28420380..28423377 /locus_tag="TCM_015541" /note="dbxref CacaoGD:Thecc1EG015541" mRNA 28420380..28423377 /locus_tag="TCM_015541" /product="Concanavalin A-like lectin protein kinase family protein" /inference="alignment:exonerate- protein:2:ricco:30154.m001123" /inference="similar to AA sequence:ricco:30154.m001123" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04772t00001" CDS 28420640..28422703 /locus_tag="TCM_015541" /note="dbxref ricco:30154.m001123" /codon_start=1 /product="Concanavalin A-like lectin protein kinase family protein" /protein_id="EOY23740.1" /db_xref="TAIR:AT5G55830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IDH3" /translation="MAIRISSSSVFPVACFWHWFFLWSWSLYLLALVQYPTLVDSSGT ASAPVINVIKHISFTNFSLDDPRVTSDVKLLGSAKLSMEKGAVQIPDESDAFDLRHQA GRAIYSSPVRLFDPHTSTPASFQSTFAFQFTNSSNASRDMLNHGGSGLTFIMVPDEFT VGRPGPWLGMLNDACQEDYKAVAIEFDTHQNPQFGDPNDNHVGLNLGSIVSTTTIDAS DFGVILNDASVHRAWITYDGPRRWMDIHLGSDGGDYPSKPIFSGSLDLSPHLNEYMFV GFSASTGNMTQIHNVLSWNFTATSQAFLRIPSEETCESEIILQKSDAAQRTQKRSNRE PPSSFLIFIAVAVLALAIMIGFFCSRRGKNDNSKLNALPEKTQRPRPPNKPRRFTFSE VSTATRSFSEAEILGSDARGVYYRGKLPNGCQVAIKRLSAQFLNSQQGLDRRRLLKEI GAMSRVRHPNLVPIRGWCHDNREMMIVYDFFTNGSLDKWLFGVGVLPWTRRFKAITDV AEALSFLHSKQLAHKNMKTSSVFLDVSFRAVLGDFGMVLSATESKKFEAAVSQTADVF EFGIFMLEVVSGRGKLDPEVNQEERDLVDFAWRMHMKDEKVKVVDGRMGSLVNLEQAI RVLDIGLLCTLNESKGRPTVEEVVEFLSMERQIPELPASRPVALFPYNSATGLCTGYS CGPFK" mobile_element 28423094..28423188 /note="source:CACAO_PIF_E119_scaffold_3 4237 4335" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28423149..28423197) /note="source:scaffold_2_CACTA_0281 682 730" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28423300..28423611) /note="source:CACAO_on_E69_scaffold_9 704 1029" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(28423617..28424146) /note="source:CACAO_on_E69_scaffold_9 185 492" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(28424819..28424874) /note="source:scaffold_2_CACTA_0239 8779 8835" /mobile_element_type="transposon:TIR/CACTA" gene 28426481..28430335 /locus_tag="TCM_015542" /note="dbxref CacaoGD:Thecc1EG015542" mRNA join(28426481..28426857,28426959..28427202, 28427280..28427429,28428131..28428188,28428281..28428373, 28428511..28428609,28428860..28428997,28429547..28429602, 28429709..28430335) /locus_tag="TCM_015542" /product="SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g40420.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018672t1" /inference="similar to AA sequence:Phytozome:Glyma06g14340.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b015015t1a4; inference alignment:Newbler:10:TSA:cgbaL_g02996t00002" mRNA join(28426481..28426857,28426959..28427202, 28427280..28427429,28428131..28428188,28428281..28428373, 28428511..28428609,28428860..28428951,28429543..28429602, 28429709..28430335) /locus_tag="TCM_015542" /product="SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g40420.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018672t1" /inference="similar to AA sequence:Phytozome:Glyma04g40420.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02996t00002" mRNA join(28426481..28426857,28426959..28427166, 28427280..28427429,28428131..28428188,28428281..28428373, 28428511..28428609,28428860..28428997,28429547..28429602, 28429709..28430335) /locus_tag="TCM_015542" /product="SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g40420.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018672t1" /inference="similar to AA sequence:Phytozome:Glyma06g14340.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b015015t1a2; inference alignment:Newbler:10:TSA:cgbaL_g02996t00002" mRNA join(28426481..28426857,28426959..28427166, 28427280..28427429,28428131..28428188,28428281..28428373, 28428511..28428609,28428860..28428951,28429543..28429602, 28429709..28430335) /locus_tag="TCM_015542" /product="SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g40420.1.3" /inference="similar to AA sequence:Phytozome:Glyma04g40420.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b015015t1a3; inference alignment:Newbler:10:TSA:cgbaL_g02996t00002" CDS join(28426676..28426857,28426959..28427202, 28427280..28427429,28428131..28428188,28428281..28428373, 28428511..28428609,28428860..28428951,28429543..28429602, 28429709..28429975) /locus_tag="TCM_015542" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG018672t1" /codon_start=1 /product="SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 1" /protein_id="EOY23741.1" /db_xref="Phytozome:Glyma04g40420.1" /db_xref="TAIR:AT4G27585.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LDI0" /translation="MNKMWRVNSLNNAVRTLRYFQETSFSTSVIRQHSFSSPRLSSAP FAIAVRHLRTGRDPSISYEITPPVNWGIRIVPEKKAYVIERFGKYVKTLPSGIHFLIP FVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLASYGVEHPIYAV IQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAAKDWGLQCLRYEIRDISPPR GVRAAMEMQAEAERKKRAQVLESEGERQANINIADGKKNAVILASEAARTDQVNRAQG EAEAILARAQATAKGIALVSQSLKESGGVEAASLRIAEQYVQAFSNIAKEGTTMLLPS SAANPANMIAQALTMYKSLVSNVSTDGSHVNISPELSRRIKDGPSGETEGETPNPRVV DTMATNHASHTGFSLQSSKEKE" CDS join(28426676..28426857,28426959..28427166, 28427280..28427429,28428131..28428188,28428281..28428373, 28428511..28428609,28428860..28428951,28429543..28429602, 28429709..28429975) /locus_tag="TCM_015542" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 4" /protein_id="EOY23744.1" /db_xref="Phytozome:Glyma04g40420.1" /db_xref="TAIR:AT4G27585.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LDI0" /translation="MNKMWRVNSLNNAVRTLRYFQETSFSTSVIRQHSFSSPRLSSAP FAIAVRHLRTGRDPSISYEITPPVNWGIRIVPEKKAYVIERFGKYVKTLPSGIHFLIP FVDRIAYVHSLKEEAIPIPDQSAITKDNIVDPKLASYGVEHPIYAVIQLAQTTMRSEL GKITLDKTFEERDTLNEKIVEAINVAAKDWGLQCLRYEIRDISPPRGVRAAMEMQAEA ERKKRAQVLESEGERQANINIADGKKNAVILASEAARTDQVNRAQGEAEAILARAQAT AKGIALVSQSLKESGGVEAASLRIAEQYVQAFSNIAKEGTTMLLPSSAANPANMIAQA LTMYKSLVSNVSTDGSHVNISPELSRRIKDGPSGETEGETPNPRVVDTMATNHASHTG FSLQSSKEKE" CDS join(28426676..28426857,28426959..28427202, 28427280..28427429,28428131..28428188,28428281..28428373, 28428511..28428609,28428860..28428990) /locus_tag="TCM_015542" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG018672t1" /codon_start=1 /product="SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 2" /protein_id="EOY23742.1" /db_xref="Phytozome:Glyma06g14340.1" /db_xref="TAIR:AT4G27585.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LDI0" /translation="MNKMWRVNSLNNAVRTLRYFQETSFSTSVIRQHSFSSPRLSSAP FAIAVRHLRTGRDPSISYEITPPVNWGIRIVPEKKAYVIERFGKYVKTLPSGIHFLIP FVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLASYGVEHPIYAV IQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAAKDWGLQCLRYEIRDISPPR GVRAAMEMQAEAERKKRAQVLESEGERQANINIADGKKNAVILASEAARTDQVNRAQG EAEAILARAQATAKGIALVSQSLKESGGVEVRFFHRCHQMRA" CDS join(28426676..28426857,28426959..28427166, 28427280..28427429,28428131..28428188,28428281..28428373, 28428511..28428609,28428860..28428990) /locus_tag="TCM_015542" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG018672t1" /codon_start=1 /product="SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 3" /protein_id="EOY23743.1" /db_xref="Phytozome:Glyma06g14340.1" /db_xref="TAIR:AT4G27585.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LDI0" /translation="MNKMWRVNSLNNAVRTLRYFQETSFSTSVIRQHSFSSPRLSSAP FAIAVRHLRTGRDPSISYEITPPVNWGIRIVPEKKAYVIERFGKYVKTLPSGIHFLIP FVDRIAYVHSLKEEAIPIPDQSAITKDNIVDPKLASYGVEHPIYAVIQLAQTTMRSEL GKITLDKTFEERDTLNEKIVEAINVAAKDWGLQCLRYEIRDISPPRGVRAAMEMQAEA ERKKRAQVLESEGERQANINIADGKKNAVILASEAARTDQVNRAQGEAEAILARAQAT AKGIALVSQSLKESGGVEVRFFHRCHQMRA" mobile_element 28428347..28428387 /note="source:CACAO_M_E22186_F143_scaffold_3 11954 11994" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(28430339..28431976) /locus_tag="TCM_015543" /note="dbxref CacaoGD:Thecc1EG015543" mRNA complement(28430339..28431976) /locus_tag="TCM_015543" /product="Serine-type endopeptidase inhibitor" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005000t1" /inference="similar to AA sequence:Phytozome:Glyma14g36800.1" /note="quality class is medium-utrpoor, express is strong, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.87 coverage" CDS complement(28431174..28431566) /locus_tag="TCM_015543" /note="paralog of Thecc1EG005000t1" /codon_start=1 /product="Serine-type endopeptidase inhibitor" /protein_id="EOY23745.1" /db_xref="Phytozome:Glyma14g36800.1" /db_xref="TAIR:AT4G01575.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JG23" /translation="MSFPIPFRKPALSLLLLLLVVPFSSSSTGGSQQQLSATRLLSEA DLCASTPQPSSCPINCFRADPVCGDDGVTYWCGCADAHCAGAKVVKIGFCEVGNSGGN GSFPGQALLLVHILWLIVLGFSVLFGLI" gene 28434721..28435455 /locus_tag="TCM_015544" /note="dbxref CacaoGD:Thecc1EG015544" mRNA join(28434721..28434900,28435010..28435455) /locus_tag="TCM_015544" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g12844t00001" CDS join(28434808..28434900,28435010..28435279) /locus_tag="TCM_015544" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23746.1" /translation="MGGCASRPKEFDTPVDAPASPEKAQLETAAQENTDGGEDQNKQP LVDLSEPEKEAQNSSSDSNAATAAELVSADTAKPTEDDVKAVANNAEDKVEATQADKS KAAPSKEEDKNDAPLVTL" gene 28435887..28444269 /locus_tag="TCM_015545" /note="dbxref CacaoGD:Thecc1EG015545" mRNA join(28435887..28436333,28436426..28436554, 28436667..28436834,28436932..28437015,28437138..28437188, 28437840..28437896,28437978..28438060,28438750..28438873, 28438964..28439023,28439459..28439701,28439983..28440066, 28440185..28440332,28440763..28440890,28441219..28441266, 28441393..28441523,28441746..28441828,28442032..28442135, 28442523..28442593,28443403..28443701,28443866..28444269) /locus_tag="TCM_015545" /product="DNA mismatch repair protein MutS, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038675001" /inference="similar to AA sequence:Phytozome:GSVIVT01038675001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8352t2" CDS join(28436124..28436333,28436426..28436554, 28436667..28436834,28436932..28437015,28437138..28437188, 28437840..28437896,28437978..28438060,28438750..28438873, 28438964..28439023,28439459..28439701,28439983..28440066, 28440185..28440332,28440763..28440890,28441219..28441266, 28441393..28441523,28441746..28441828,28442032..28442135, 28442523..28442593,28443403..28443701,28443866..28444023) /locus_tag="TCM_015545" /codon_start=1 /product="DNA mismatch repair protein MutS, putative" /protein_id="EOY23747.1" /db_xref="Phytozome:GSVIVT01038675001" /db_xref="TAIR:AT5G54090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2A9" /translation="MPLFAALGTICGYPMSIIRKRNVYFKVSSSIEGHNQSRVKYDSL RVLEWDKLCDCVASFARTSLGRQATKAQLWSLDQTFQESLRLLQETNAAILMHNHGSF NLDLTSVDLALVKSAIKQARRGLPIDANAAMALVSLLQFIEALQLNLKAAIKEDSDWY KQFMPLSEKITQLVVNRSIIKLIQQVIDEDGTVKDSASSALKKARHQVRMLERKLHHL VENLIRNDTKEASLLEASTIDGRWCIRSGTDQMTSFKGLLLSSGSGLGSIIEPLAAVP LNDELQQARALVDKAEADVLLMVTEKIQMDLDDIEKILRSAIQLDIIYARATYSHSFG GTYPNIYLPEDINGTLMAESYRSKDKTLQASNTNKEWILYLRKAYHPLLLQQHRQKLH MARKDVRNATAEIRRRKLQGENMAVKGEADIDLSSLEMQVRALEEAPPVPTDFFIAQK TRVLVITGPNTGGKTICLKTVGLAAIMAKSGLHVLSSESAKIPWFDSVFADIGDEQSL SQSLSTFSGRLKQISEIRSQSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKTGAL LTIATTHHGELKTLKYSNDTFENACMEFDEENLKPTYKILWGVPGRSNAINIAERLGV PSIVVDNARELYGPASAEIDEVIIDMETFKQSFQELIHESRHYLMLSRSLHEKLLLTR RKLKDLGTDQRYKMMQVLSEAAAVARSTLHKRVQQLRTSTMKQSQLSKASKHTLPSNY KHATSVETKQRSTNVGSSSIQVIKQPQSEKITELPKVGDMVHVSSLGKRAMVLRVDTY KEEIVVQAGNMKLKLKLIDVQT" mobile_element complement(28444594..28444711) /note="source:CACAO_Again_on_S_E95_scaffold_3 3325 3449" /mobile_element_type="transposon:TIR/hAT" gene complement(28446568..28447800) /locus_tag="TCM_015546" /note="dbxref CacaoGD:Thecc1EG015546" mRNA complement(join(28446568..28447262,28447429..28447800)) /locus_tag="TCM_015546" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene12423.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019911t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s00360.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10622t00001" CDS complement(join(28446693..28447262,28447429..28447596)) /locus_tag="TCM_015546" /note="paralog of Thecc1EG019911t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23748.1" /db_xref="Phytozome:POPTR_0015s00360.1" /db_xref="TAIR:AT5G24600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLU4" /translation="MTIEKKYLDWALVPIGILLMLAYHLWLLYRIVKHPTKTVIGVNA INRRFWVRAMMEDVAKNGVLAVQTLRNNIMASTLLASTAIMLSSLIAVLMTSSSGNRS SWFVFGDRSNLAFSIKFFSILVCFLVAFLLNVQSIRYYSHASILINVPVKKMSQHQRH HHLTVEYVANTVNRGSYFWSLGLRAFYFSFPLFLWIFGPLPMVFCCIALIFMLYFLDV TFQYGGAAGVVDDNSHKDEELGGSGRS" mobile_element 28451340..28454334 /note="source:CACAO_M_E22956_F245_scaffold_3 1 2995" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28461320..28463763 /locus_tag="TCM_015548" /note="dbxref CacaoGD:Thecc1EG015548" mRNA join(28461320..28461439,28461781..28462251, 28463174..28463302,28463461..28463608,28463712..28463763) /locus_tag="TCM_015548" /product="F-box protein SKIP31" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g40390.1" /inference="similar to AA sequence:Phytozome:Glyma04g40390.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc138t11" CDS join(28461859..28462251,28463174..28463302, 28463461..28463538) /locus_tag="TCM_015548" /codon_start=1 /product="F-box protein SKIP31" /protein_id="EOY23749.1" /db_xref="Phytozome:Glyma04g40390.1" /db_xref="TAIR:AT5G24610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLU3" /translation="MEVYGKTMAAAPANVIYLSTILGRDEPMPVHKCDWKCQNEHVCG NMYRCKLTGITHICDKNCNQRILYDNHSSLCRASGQVFPLTTAEEQAVRGVRRKFDAD NSPSSDSCGFKRRRDAQFHPSPFERSFSAVIMSLLMLDVKTMPVTADEIGSMLCFLPI SSLAFGGIAPMECKLWSVEETNGVFCLAAHEHVLLLLAF" gene 28463820..28464814 /locus_tag="TCM_015550" /note="dbxref CacaoGD:Thecc1EG015550" mRNA join(28463820..28464013,28464075..28464814) /locus_tag="TCM_015550" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.88 coverage" CDS join(28463858..28464013,28464075..28464146) /locus_tag="TCM_015550" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23750.1" /translation="MLALALSLAGEVVQDLVAELCSWEIFMGCIGLETSKLFLLSWHI GRASKAFLVLVGEPQNKDVISCAVLKRSKFC" gene complement(28464517..28471787) /locus_tag="TCM_015551" /note="dbxref CacaoGD:Thecc1EG015551" mRNA complement(join(28464517..28464689,28466769..28467298, 28467408..28467547,28467726..28467801,28467920..28467946, 28468029..28468075,28468396..28468513,28469060..28469113, 28469195..28469253,28469407..28469656,28469906..28469967, 28470122..28470320,28470674..28470731,28471735..28471787)) /locus_tag="TCM_015551" /product="Double-stranded DNA binding, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g40370.1" /inference="similar to AA sequence:Phytozome:GSVIVT01038680001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01374t00002" mobile_element 28465080..28465129 /note="source:CACAO_M_E73087_F12_scaffold_10 9030 9080" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(28466815..28467298,28467408..28467547, 28467726..28467801,28467920..28467946,28468029..28468075, 28468396..28468513,28469060..28469113,28469195..28469253, 28469407..28469656,28469906..28469967,28470122..28470320, 28470674..28470731,28471009..28471172)) /locus_tag="TCM_015551" /product="Double-stranded DNA binding, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g40370.1" /inference="similar to AA sequence:Phytozome:GSVIVT01038680001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8365t2; inference alignment:Newbler:10:TSA:cgbaP2_g01374t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1374t10" CDS complement(join(28467194..28467298,28467408..28467547, 28467726..28467801,28467920..28467946,28468029..28468075, 28468396..28468513,28469060..28469113,28469195..28469253, 28469407..28469656,28469906..28469967,28470122..28470320, 28470674..28470731,28471735..28471775)) /locus_tag="TCM_015551" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Double-stranded DNA binding, putative isoform 1" /protein_id="EOY23751.1" /db_xref="Phytozome:GSVIVT01038680001" /db_xref="TAIR:AT5G24630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2B2" /translation="MGFISRVRNMLESSQGRMSSSRENSPDWLRSFQAPTSTLTLSSD SNSSPNCSPLREYKTDDEENFLHSSSTWEKGKRNNNKVHETPSKKKKIDVLKSSEGHR DDAKAAKGEISNKHLGSHAANSSIWTLSSDSESSPGHSPKRKEKISLSQESGEANDPV LTGRGGESPRKKTSKGKSPKKGLKVGGQTPEMENNVNDDGKITENDDNIAAAEEASEK HIEPHVSTSRLPLVLSEKIQRSKALVECEGDSIDLSGDVGAVGRIVISDTASENHEMF LDLKGTIYKTTIVPSRTFCIVGFGQSEAKIEAIMNDFIQLKSQSNVCEAETMVEGTLD GFSFDSEDEIDKMPKTIPHQTDQNEGTDGQMNGKAKGKADKTSTASRKRGKTAGGKPQ PPKKAGKKTVVSKKPKTRK" CDS complement(join(28467194..28467298,28467408..28467547, 28467726..28467801,28467920..28467946,28468029..28468075, 28468396..28468513,28469060..28469113,28469195..28469253, 28469407..28469656,28469906..28469967,28470122..28470320, 28470674..28470721)) /locus_tag="TCM_015551" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Double-stranded DNA binding, putative isoform 2" /protein_id="EOY23752.1" /db_xref="Phytozome:GSVIVT01038680001" /db_xref="TAIR:AT5G24630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2B2" /translation="MSSSRENSPDWLRSFQAPTSTLTLSSDSNSSPNCSPLREYKTDD EENFLHSSSTWEKGKRNNNKVHETPSKKKKIDVLKSSEGHRDDAKAAKGEISNKHLGS HAANSSIWTLSSDSESSPGHSPKRKEKISLSQESGEANDPVLTGRGGESPRKKTSKGK SPKKGLKVGGQTPEMENNVNDDGKITENDDNIAAAEEASEKHIEPHVSTSRLPLVLSE KIQRSKALVECEGDSIDLSGDVGAVGRIVISDTASENHEMFLDLKGTIYKTTIVPSRT FCIVGFGQSEAKIEAIMNDFIQLKSQSNVCEAETMVEGTLDGFSFDSEDEIDKMPKTI PHQTDQNEGTDGQMNGKAKGKADKTSTASRKRGKTAGGKPQPPKKAGKKTVVSKKPKT RK" gene 28471843..28475437 /locus_tag="TCM_015552" /note="dbxref CacaoGD:Thecc1EG015552" mRNA join(28471843..28472632,28473061..28473176, 28474299..28474425,28474732..28474880,28474984..28475046, 28475132..28475437) /locus_tag="TCM_015552" /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038683001" /inference="similar to AA sequence:Phytozome:Glyma04g40360.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8459t1" CDS join(28472198..28472632,28473061..28473176, 28474299..28474425,28474732..28474880,28474984..28475046, 28475132..28475171) /locus_tag="TCM_015552" /codon_start=1 /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein" /protein_id="EOY23753.1" /db_xref="Phytozome:Glyma04g40360.1" /db_xref="TAIR:AT5G24650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCK3" /translation="MRTKPKPKPKIGWLYQTYYPSPATPSTHITISKASSFRQSIELY KNSDEMERGKEQGLMVPRLMPQQNPLEQLQAKFKEVENGFRTWLAKQSMPVEAAVVTG TSAAQGAAIGAFMGTLTNDISSSLPTPQSSLNPQAMASLQQAQALSGGPLVQARNFAV MTGVNAGISCVMRRLRGKEDVQSSMVAAFGSGAMFSLVSGIGGPNQAANAVSSGLFFA LVQGGLFQLGKKFSQPPAEDPYYSRTRSMLNSLGLQNYEKNFKKGLLTDSTLPLLTDS ALRDVKIPPGPRLLILDHIQRDPELREKLGSRG" gene complement(28477117..28482695) /locus_tag="TCM_015553" /note="dbxref CacaoGD:Thecc1EG015553" mRNA complement(join(28477117..28477731,28482139..28482695)) /locus_tag="TCM_015553" /product="Response to low sulfur 3, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m010929" /inference="similar to AA sequence:ricco:30190.m010929" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8426t1" CDS complement(join(28477305..28477731,28482139..28482275)) /locus_tag="TCM_015553" /note="dbxref ricco:30190.m010929" /codon_start=1 /product="Response to low sulfur 3, putative" /protein_id="EOY23754.1" /translation="MAPTIAAAGPNSIAKKEEEEELRKRNQELERELKESREREEQMR KDFVYKKRALHIGSSITTIFLRQSKKKQSKKMAPTKAVADPKSIAKKEEEEDLRKRNK ELERELKQSREREEGMRKQLTEAWERLKVVEEAEERLCSQLGELEAESVNEARAYNAR ILSLMDQLSKANLVVNNHPSPTPLSIL" gene 28485543..28489336 /locus_tag="TCM_015554" /note="dbxref CacaoGD:Thecc1EG015554" mRNA join(28485543..28485854,28486106..28487631, 28487740..28487921,28488736..28489336) /locus_tag="TCM_015554" /product="Autophagy-related protein 13 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30098.m001725" /inference="similar to AA sequence:ricco:30098.m001725" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8377t4" mRNA join(28485829..28485965,28486106..28487631, 28487740..28487921,28488736..28489252) /locus_tag="TCM_015554" /product="Autophagy-related protein 13 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30098.m001725" /inference="similar to AA sequence:ricco:30098.m001725" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1084t3; alternateUTRof:Thecc1EG015554t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8377t4" CDS join(28486252..28487631,28487740..28487921, 28488736..28489042) /locus_tag="TCM_015554" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30098.m001725" /codon_start=1 /product="Autophagy-related protein 13 isoform 1" /protein_id="EOY23755.1" /db_xref="TAIR:AT3G49590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2B5" /translation="MEMDRESGKLEQIVYQFRSKILHVILDSRVPSLHHRHQRQLQQQ ESLSLSRVRKTDKWFNLVLGDRPAVLENLNFSLRNLLDPMIIDVILVHNGSCSSSVDN LYTPSAAASGPSTETVIERWVVQYDCPRVIATPSGADTSVSYKKTYKKSIVLLRSLYA QMRLLPAYRIFRQLSSLSQTYNFDLIYKVSSFSHPFSREEEDVMKEYSFVPVEALPGH LCVSVTYRPTLSEFNLEPLVSLPPKIITDYVGSPTTDPMRSFPSSEKGVRATSFPLRG VRPPSSAPFQRPHSWSSGFHRGFPFTQNQSLGGSPPAYRTSPVPYDIASPPSDMYGNR IQNHRLSTLQQVTAYDEYQLSPPFSPSASPSPPTYLSSANPLLTHHRSETAPVTIPLP LTGRSSRYLSPNSSDPSRHSLPPLSPRSSKHDASSQESPSGIRSYRKIEALRAGESPS GLANHYSVLKVVKDSKDDSGRFSGLLSSSGSPRIGFSRSSSRLSFQDDTDDCEFSCPF DVDDVDASDSLASQNIEGKKASEFTAQSAGKKSQDAAVGILVHMLRTALPLRQDSSCY SAYSLKTECEGGFGTASEFYMPRKTADALEELKSYREMKDLLLSKSGARVLRKEEM" CDS join(28486252..28487631,28487740..28487921, 28488736..28489042) /locus_tag="TCM_015554" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30098.m001725" /codon_start=1 /product="Autophagy-related protein 13 isoform 1" /protein_id="EOY23756.1" /db_xref="TAIR:AT3G49590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2B5" /translation="MEMDRESGKLEQIVYQFRSKILHVILDSRVPSLHHRHQRQLQQQ ESLSLSRVRKTDKWFNLVLGDRPAVLENLNFSLRNLLDPMIIDVILVHNGSCSSSVDN LYTPSAAASGPSTETVIERWVVQYDCPRVIATPSGADTSVSYKKTYKKSIVLLRSLYA QMRLLPAYRIFRQLSSLSQTYNFDLIYKVSSFSHPFSREEEDVMKEYSFVPVEALPGH LCVSVTYRPTLSEFNLEPLVSLPPKIITDYVGSPTTDPMRSFPSSEKGVRATSFPLRG VRPPSSAPFQRPHSWSSGFHRGFPFTQNQSLGGSPPAYRTSPVPYDIASPPSDMYGNR IQNHRLSTLQQVTAYDEYQLSPPFSPSASPSPPTYLSSANPLLTHHRSETAPVTIPLP LTGRSSRYLSPNSSDPSRHSLPPLSPRSSKHDASSQESPSGIRSYRKIEALRAGESPS GLANHYSVLKVVKDSKDDSGRFSGLLSSSGSPRIGFSRSSSRLSFQDDTDDCEFSCPF DVDDVDASDSLASQNIEGKKASEFTAQSAGKKSQDAAVGILVHMLRTALPLRQDSSCY SAYSLKTECEGGFGTASEFYMPRKTADALEELKSYREMKDLLLSKSGARVLRKEEM" gene 28489387..28492825 /locus_tag="TCM_015555" /note="dbxref CacaoGD:Thecc1EG015555" mRNA join(28489387..28489772,28489942..28490019, 28490113..28490949,28491140..28491251,28491945..28492040, 28492122..28492234,28492505..28492825) /locus_tag="TCM_015555" /product="Zinc finger with UFM1-specific peptidase domain protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s00370.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s00370.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07168t00001" CDS join(28489961..28490019,28490113..28490949, 28491140..28491251,28491945..28492040,28492122..28492205) /locus_tag="TCM_015555" /codon_start=1 /product="Zinc finger with UFM1-specific peptidase domain protein, putative" /protein_id="EOY23757.1" /db_xref="Phytozome:POPTR_0012s00370.1" /db_xref="TAIR:AT5G24680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2B7" /translation="MESSACPFCHLTFPSLELQRHANSHFEDEDEEAKDLKLANQIAS SSGSVDVDSVSPLIASQTRSNFYHVKDGLISLLKNCLELETQHNSSVTILSGYVDHFQ CLPSVDVGWGCGWRNIQMLSSHLLAHRQEARQVLFGGSGFVPDIAFLQRWLEIAWERG FDPPGAQHFKCKIYGSNHKIGTTECAALFRSFGLRARVVDFGPKESQPFYLSVPGSTL GQTVMKRSIIQVSGPMDRYVHHQQGSMKPRHSFDSLGYGRSGNFTGKSGGPQILVDWV WNYFSDKGLTISGSNRVVVSDRAPLYFQHDGHSRTIVGIQVKHQQNGIHQFNLLIMDP SDGTIALERSLKKNVGWQKLIKRGVHTLKMPQYQLCYIDPGIASGVELQQLKTINSIF IEL" gene 28492676..28493743 /locus_tag="TCM_015556" /note="dbxref CacaoGD:Thecc1EG015556" mRNA 28492676..28493743 /locus_tag="TCM_015556" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1126t1" CDS 28492697..28492945 /locus_tag="TCM_015556" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23758.1" /translation="MSGMSGTHLEVGSSSLDNCIVISSGEVPATPVSYGAQSKSVFEL LIVPMLILLNLRECLSAVPLCCWHSMCTSNLLTSNQIA" gene 28495091..28502885 /locus_tag="TCM_015557" /note="dbxref CacaoGD:Thecc1EG015557" mRNA join(28495091..28495890,28497597..28498142, 28498430..28498873,28499841..28500050,28500590..28500820, 28501187..28501248,28501679..28502885) /locus_tag="TCM_015557" /product="Vacuolar iron transporter (VIT) family protein" /inference="alignment:exonerate- protein:2:ricco:30098.m001732" /inference="similar to AA sequence:ricco:30098.m001732" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8448t1" CDS join(28495524..28495890,28497597..28498142, 28498430..28498873,28499841..28500050,28500590..28500820, 28501187..28501248,28501679..28502143) /locus_tag="TCM_015557" /note="dbxref ricco:30098.m001732" /codon_start=1 /product="Vacuolar iron transporter (VIT) family protein" /protein_id="EOY23759.1" /db_xref="TAIR:AT4G27870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RPK0" /translation="MEQLEPQLAKKHLWPDQDEEDEEEEAGVGLLARHSRHPNNGVGT TPTSTATTISGEPQPAPATAHTNVTTSELPEQEPEGEEQEAADNSQRDEELGDENGED KVVKEEGDGVTNSFYFHKLQGTESVNGVSEMQSEISKGLSTEINHQQFKNVEDRNFFR LSPALVEQSHEETNTSFKHFDNATKVDANVDLIGEIEEDLMELDVERVLEKQNTHDLY CPNCNSCITRRVILHRRKPKISNIRHKPKHVKKLTPIPISVVDGRGGNSPKIYSNDSP TLAPGVQNNSTEQEAFSCLSCFSLFIPIGNGCFKIFQFFGRGKQNENTQNPQEINQSE NTQISQEMNPSKGTQSPQEISQKDIANSPKGISQNGKTESPQKLSHIEDTQNTRNPPM ISQSENTQSPQKINGNEITHSPQNINQNERKQSPQNIPKARTSWIFSVFAFHKGKATV DKAGHASSVQGAAVPTLSVSVTSGKHVDDAIIKPKVPGKSNIFSSTKSPLFGKVKAKS REKKLDAGMLNRNSGDNEIEDIEAGPLEPTCSSRTEVGNSSQTGNQNGCGDDDAGEAH EWEILKSIVYGGLIESITSLGVVSSAAGAGADTLNVLALGLANLIGGLIIISHSLREL KNDKPPGASTEVNVEDRYQVVLGRRQNFVLHVTVAILSFLIFGLVPPIVYGFSFRKSD DKDLKLAAVAGASLVCIILLALGKGHVRKPHRAYFRTVSYYVALGFMASGISYVAGEL IKKLLEKLGLFESTSAVSAPFLETIPLEVGRASY" misc_feature join(28496644..28497428,28497597..28497622) /locus_tag="TCM_015557" /note="Gene fragment of Thecc1EG015557t1; dbxref gnl|CacaoGD|Thecc1EG015557t1; quality class is mediumpartial-partof is thecc1eg015557t1, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5330t1; dbxref CacaoGD:Thecc1EG015558t1" gene complement(28502948..28506432) /locus_tag="TCM_015559" /note="dbxref CacaoGD:Thecc1EG015559" mRNA complement(join(28502948..28503628,28504543..28504604, 28504727..28505146,28506117..28506432)) /locus_tag="TCM_015559" /product="NOD26-like intrinsic protein 5,1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s45920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027412t1" /inference="similar to AA sequence:ricco:30068.m002640" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9511t1" CDS complement(join(28503433..28503628,28504543..28504604, 28504727..28505146,28506117..28506335)) /locus_tag="TCM_015559" /note="dbxref ricco:30068.m002640; paralog of Thecc1EG027412t1" /codon_start=1 /product="NOD26-like intrinsic protein 5,1" /protein_id="EOY23760.1" /db_xref="TAIR:AT4G10380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SAI4" /translation="MPDEETATPTASAPATPGTPGGPLFTSMRVDSLSYDRKSMPRCK CFPVTAPTWGQPHTCFTDFPAPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYSGAE TLIGNAACAGLAVMIIILSTGHISGAHLNPSLTIAFAACRHFPWAHVPAYVAAQVSAS ICASFALKGVFHPFMSGGVTVPSVGYGQAFALEFLITFNLLFVVTAVATDTRAVGELA GIAVGATVMLNILVAGSSSGGSMNPVRTLGPAVAAGNYKALWIYLIAPTLGALVGSGT YTLVKLHEDEAEAPRQVRSFRR" gene complement(28511627..28514784) /locus_tag="TCM_015560" /note="dbxref CacaoGD:Thecc1EG015560" mRNA complement(join(28511627..28511859,28512031..28512118, 28514292..28514356,28514464..28514784)) /locus_tag="TCM_015560" /product="WAS/WASL-interacting protein family member 1" /inference="alignment:exonerate-protein:2:frave:gene01820" /inference="similar to AA sequence:Phytozome:POPTR_0011s15010.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9516t2" CDS complement(join(28511750..28511859,28512031..28512118, 28514292..28514356,28514464..28514734)) /locus_tag="TCM_015560" /codon_start=1 /product="WAS/WASL-interacting protein family member 1" /protein_id="EOY23761.1" /db_xref="Phytozome:POPTR_0011s15010.1" /db_xref="TAIR:AT1G33265.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0M5" /translation="MMSFSLSPLVTPYPAIAAAKGASNSNEHPKFLSLNLQNGKSKDL VGICLRKAKSCSGTRRRFCCKSQLADFAPVTSAAYGVLLFSGGLFAYTKSGSKGSLFG GLTGAALMASAYFLMQASETKAIGEALGFGSAFLFSSVFGIRLAATRKLIPAGPLLGV SICALVVFTSAYLQNSL" gene complement(28515329..28519802) /locus_tag="TCM_015561" /note="dbxref CacaoGD:Thecc1EG015561" mRNA complement(join(28515329..28516100,28516214..28517033, 28519429..28519802)) /locus_tag="TCM_015561" /product="LRR receptor-like serine/threonine-protein kinase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15020.1" /inference="similar to AA sequence:ricco:30068.m002638" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06803t00001" CDS complement(join(28515406..28516100,28516214..28516886)) /locus_tag="TCM_015561" /note="dbxref ricco:30068.m002638" /codon_start=1 /product="LRR receptor-like serine/threonine-protein kinase, putative" /protein_id="EOY23762.1" /db_xref="TAIR:AT1G33260.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RZ02" /translation="MCVPMATALTTDKSKVRSAWIFDVSKFVCWYWRCWPIPSIFLLV PMLILCSPLTFCVASHPMPSTVFHTSSDPPTPSLKTTQPHAHPQIAIVITVSLVLLLA LLFAMGFLFRFLRLRKLRRGKPTSTVLPDQEKGKDSGVEGEEFVRKFRWEEIKDVTKN FSRVIGQGGFSNVYLANLSGSSQGAVKVQVGSDRLNQVFKQELDILLRLRHDNIVKLL GYCDDLEEGAMVFEYVPNGNLQEKLHEMEREVLPWKTRTAIAFQLAQAIEYLHEKCTL QIVHGDIKASNILLDEHFNCKLCDFGSAKMGFSSTVIPPSCSRTKQVMIGSPGYTDPH YLRTGFASKKNDVYSLGVIILELVTGMEAFCPERGQLLTSIVAPNLRDIAECGAEEKV AELVDPRLAGEFDLEEARAMLSIAALCLHQSPTVRPSASQIMQTIKDKITSIDFVFSP GKGCH" mobile_element complement(28516910..28516951) /note="source:CACAO_Mariner_E36_scaffold_2 1182 1221" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 28521577..28529965 /locus_tag="TCM_015562" /note="dbxref CacaoGD:Thecc1EG015562" mRNA join(28521577..28522885,28522974..28523525, 28523624..28523985,28527541..28528391) /locus_tag="TCM_015562" /product="Fringe-related protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002636" /inference="similar to AA sequence:ricco:30068.m002636" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc24t2; alternateUTRof:Thecc1EG015562t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc41t2" mRNA join(28521577..28522885,28522974..28523525, 28523624..28523985,28526706..28526720,28527028..28527633, 28527776..28527798) /locus_tag="TCM_015562" /product="Fringe-related protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002636" /inference="similar to AA sequence:ricco:30068.m002636" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc42t4; alternateUTRof:Thecc1EG015562t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc41t2" mRNA join(28521624..28522885,28522974..28523525, 28523624..28523693,28523889..28523972,28525303..28525388, 28526204..28526234,28527541..28527633,28527776..28528286, 28528368..28528600,28529581..28529965) /locus_tag="TCM_015562" /product="Beta-1,3-n-acetylglucosaminyltransferase radical fringe isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002636" /inference="similar to AA sequence:ricco:30068.m002636" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc41t2" mRNA join(28521628..28522885,28522974..28523525, 28523624..28523985,28527541..28527633,28527776..28528286, 28528368..28528834) /locus_tag="TCM_015562" /product="Fringe-related protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002636" /inference="similar to AA sequence:ricco:30068.m002636" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc41t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc41t2" mRNA join(28521628..28522885,28522974..28523525, 28523624..28523985,28527541..28527612,28527757..28528286, 28528368..28528834) /locus_tag="TCM_015562" /product="Fringe-related protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002636" /inference="similar to AA sequence:ricco:30068.m002636" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc41t2; alternateUTRof:Thecc1EG015562t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc41t2" mRNA join(28521736..28522885,28522974..28523525, 28523624..28523985,28527541..28527633,28527776..28528064, 28528244..28529089) /locus_tag="TCM_015562" /product="Fringe-related protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002636" /inference="similar to AA sequence:ricco:30068.m002636" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8383t2; alternateUTRof:Thecc1EG015562t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc41t2" CDS join(28521938..28522885,28522974..28523525, 28523624..28523693,28523889..28523972,28525303..28525388, 28526204..28526234,28527541..28527633,28527776..28527795) /locus_tag="TCM_015562" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002636" /codon_start=1 /product="Beta-1,3-n-acetylglucosaminyltransferase radical fringe isoform 1" /protein_id="EOY23763.1" /db_xref="TAIR:AT1G33250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C881" /translation="MMLPCHNNLAVTNERSPRVARSRCRRLRQSRTVTAVVAVAALLI STTAWLSLVFSGTTTRCWRRFKDWEGSPLSLSRSLPWSSSPISRSIPAPPRFQSPLAS PRNRSLSERANEKQELLLNDIVFGIAGSLHLWKQRKELLRLWWRPLEMRGHVWLEEQV PPEEADDSLPPLMVSEDISRFRYTNPTGHPSGLRISRILTESFRLRLPDVRWFVLGDD DTVFNVDNLVAVLSKYDPSEMMYIGTPSESHSANAYFSHSMAFGGGGIAISYPLAEAL SNFHDDCIERYPKLYGSDDRLHACITELGVPLTREHGFHQWDIRGNAYGLLSSHPIAP LVSIHHVEYVDPFYPGLTSLDSLKLFAKAMRMEPRSFLQRSICYDRVRRLTFSVSIGY VVQVFPNIVLPRELERSEQTYIAWNKLRHRHEFDHDTRDSYKSVCKKPVMFFLKDVMK DGNATSGSYGRAKSKDDLKRKVFCFPSSPPLQYVQKIQVLGYPLGKNWHLVPRRLCCK VNNTGDELLRLTVGQYIGVLCCTQLIELKIRPTSAQSFHSLPSGGSETGMSFNNAIVS FKYKAMNRQFLSAQALGPRKIVIILACWPLNLFWKEERGWGGGTGADACERGWLTVYY GKG" CDS join(28521938..28522885,28522974..28523525, 28523624..28523734) /locus_tag="TCM_015562" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002636" /codon_start=1 /product="Fringe-related protein isoform 2" /protein_id="EOY23764.1" /db_xref="TAIR:AT1G33250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C881" /translation="MMLPCHNNLAVTNERSPRVARSRCRRLRQSRTVTAVVAVAALLI STTAWLSLVFSGTTTRCWRRFKDWEGSPLSLSRSLPWSSSPISRSIPAPPRFQSPLAS PRNRSLSERANEKQELLLNDIVFGIAGSLHLWKQRKELLRLWWRPLEMRGHVWLEEQV PPEEADDSLPPLMVSEDISRFRYTNPTGHPSGLRISRILTESFRLRLPDVRWFVLGDD DTVFNVDNLVAVLSKYDPSEMMYIGTPSESHSANAYFSHSMAFGGGGIAISYPLAEAL SNFHDDCIERYPKLYGSDDRLHACITELGVPLTREHGFHQWDIRGNAYGLLSSHPIAP LVSIHHVEYVDPFYPGLTSLDSLKLFAKAMRMEPRSFLQRSICYDRVRRLTFSVSIGY VVQVFPNIVLPRELERSEQTYIAWNKLRHRHEFDHDTRDSYKSVCKKPVMFFLKDVMK DGNATSGSYGRAKSKDDLKRKVFCFPSSPPLQYVQKIQVLGYPLGKNWHLVPRRLCCK VNNTGDELLRLTVGQCEKGALSSFTDSL" CDS join(28521938..28522885,28522974..28523525, 28523624..28523734) /locus_tag="TCM_015562" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30068.m002636" /codon_start=1 /product="Fringe-related protein isoform 2" /protein_id="EOY23765.1" /db_xref="TAIR:AT1G33250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C881" /translation="MMLPCHNNLAVTNERSPRVARSRCRRLRQSRTVTAVVAVAALLI STTAWLSLVFSGTTTRCWRRFKDWEGSPLSLSRSLPWSSSPISRSIPAPPRFQSPLAS PRNRSLSERANEKQELLLNDIVFGIAGSLHLWKQRKELLRLWWRPLEMRGHVWLEEQV PPEEADDSLPPLMVSEDISRFRYTNPTGHPSGLRISRILTESFRLRLPDVRWFVLGDD DTVFNVDNLVAVLSKYDPSEMMYIGTPSESHSANAYFSHSMAFGGGGIAISYPLAEAL SNFHDDCIERYPKLYGSDDRLHACITELGVPLTREHGFHQWDIRGNAYGLLSSHPIAP LVSIHHVEYVDPFYPGLTSLDSLKLFAKAMRMEPRSFLQRSICYDRVRRLTFSVSIGY VVQVFPNIVLPRELERSEQTYIAWNKLRHRHEFDHDTRDSYKSVCKKPVMFFLKDVMK DGNATSGSYGRAKSKDDLKRKVFCFPSSPPLQYVQKIQVLGYPLGKNWHLVPRRLCCK VNNTGDELLRLTVGQCEKGALSSFTDSL" CDS join(28521938..28522885,28522974..28523525, 28523624..28523734) /locus_tag="TCM_015562" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30068.m002636" /codon_start=1 /product="Fringe-related protein isoform 2" /protein_id="EOY23766.1" /db_xref="TAIR:AT1G33250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C881" /translation="MMLPCHNNLAVTNERSPRVARSRCRRLRQSRTVTAVVAVAALLI STTAWLSLVFSGTTTRCWRRFKDWEGSPLSLSRSLPWSSSPISRSIPAPPRFQSPLAS PRNRSLSERANEKQELLLNDIVFGIAGSLHLWKQRKELLRLWWRPLEMRGHVWLEEQV PPEEADDSLPPLMVSEDISRFRYTNPTGHPSGLRISRILTESFRLRLPDVRWFVLGDD DTVFNVDNLVAVLSKYDPSEMMYIGTPSESHSANAYFSHSMAFGGGGIAISYPLAEAL SNFHDDCIERYPKLYGSDDRLHACITELGVPLTREHGFHQWDIRGNAYGLLSSHPIAP LVSIHHVEYVDPFYPGLTSLDSLKLFAKAMRMEPRSFLQRSICYDRVRRLTFSVSIGY VVQVFPNIVLPRELERSEQTYIAWNKLRHRHEFDHDTRDSYKSVCKKPVMFFLKDVMK DGNATSGSYGRAKSKDDLKRKVFCFPSSPPLQYVQKIQVLGYPLGKNWHLVPRRLCCK VNNTGDELLRLTVGQCEKGALSSFTDSL" CDS join(28521938..28522885,28522974..28523525, 28523624..28523734) /locus_tag="TCM_015562" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30068.m002636" /codon_start=1 /product="Fringe-related protein isoform 2" /protein_id="EOY23767.1" /db_xref="TAIR:AT1G33250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C881" /translation="MMLPCHNNLAVTNERSPRVARSRCRRLRQSRTVTAVVAVAALLI STTAWLSLVFSGTTTRCWRRFKDWEGSPLSLSRSLPWSSSPISRSIPAPPRFQSPLAS PRNRSLSERANEKQELLLNDIVFGIAGSLHLWKQRKELLRLWWRPLEMRGHVWLEEQV PPEEADDSLPPLMVSEDISRFRYTNPTGHPSGLRISRILTESFRLRLPDVRWFVLGDD DTVFNVDNLVAVLSKYDPSEMMYIGTPSESHSANAYFSHSMAFGGGGIAISYPLAEAL SNFHDDCIERYPKLYGSDDRLHACITELGVPLTREHGFHQWDIRGNAYGLLSSHPIAP LVSIHHVEYVDPFYPGLTSLDSLKLFAKAMRMEPRSFLQRSICYDRVRRLTFSVSIGY VVQVFPNIVLPRELERSEQTYIAWNKLRHRHEFDHDTRDSYKSVCKKPVMFFLKDVMK DGNATSGSYGRAKSKDDLKRKVFCFPSSPPLQYVQKIQVLGYPLGKNWHLVPRRLCCK VNNTGDELLRLTVGQCEKGALSSFTDSL" CDS join(28521938..28522885,28522974..28523525, 28523624..28523734) /locus_tag="TCM_015562" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30068.m002636" /codon_start=1 /product="Fringe-related protein isoform 2" /protein_id="EOY23768.1" /db_xref="TAIR:AT1G33250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C881" /translation="MMLPCHNNLAVTNERSPRVARSRCRRLRQSRTVTAVVAVAALLI STTAWLSLVFSGTTTRCWRRFKDWEGSPLSLSRSLPWSSSPISRSIPAPPRFQSPLAS PRNRSLSERANEKQELLLNDIVFGIAGSLHLWKQRKELLRLWWRPLEMRGHVWLEEQV PPEEADDSLPPLMVSEDISRFRYTNPTGHPSGLRISRILTESFRLRLPDVRWFVLGDD DTVFNVDNLVAVLSKYDPSEMMYIGTPSESHSANAYFSHSMAFGGGGIAISYPLAEAL SNFHDDCIERYPKLYGSDDRLHACITELGVPLTREHGFHQWDIRGNAYGLLSSHPIAP LVSIHHVEYVDPFYPGLTSLDSLKLFAKAMRMEPRSFLQRSICYDRVRRLTFSVSIGY VVQVFPNIVLPRELERSEQTYIAWNKLRHRHEFDHDTRDSYKSVCKKPVMFFLKDVMK DGNATSGSYGRAKSKDDLKRKVFCFPSSPPLQYVQKIQVLGYPLGKNWHLVPRRLCCK VNNTGDELLRLTVGQCEKGALSSFTDSL" gene 28532843..28537544 /locus_tag="TCM_015563" /note="dbxref CacaoGD:Thecc1EG015563" mRNA join(28532843..28533432,28534406..28536113, 28536253..28537544) /locus_tag="TCM_015563" /product="Duplicated homeodomain-like superfamily protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene01828" /inference="similar to AA sequence:ricco:30068.m002635" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8401t1; inference alignment:Newbler:10:TSA:cgbaB_g01597t00001" mRNA join(28532879..28533432,28534406..28536113, 28536249..28537473) /locus_tag="TCM_015563" /product="Duplicated homeodomain-like superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene01828" /inference="similar to AA sequence:ricco:30068.m002635" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01597t00001" CDS join(28533035..28533432,28534406..28536113, 28536249..28536521) /locus_tag="TCM_015563" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002635" /codon_start=1 /product="Duplicated homeodomain-like superfamily protein, putative isoform 1" /protein_id="EOY23769.1" /db_xref="TAIR:AT1G33240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYZ9" /translation="MQQGGGEGGGGHQSQYGEMGAPTTAVATTTGAVSSSHMVSEQSE QLVEAASPISSRPPATGNLDEFMRLASGGGDDGGDEGDRAGGGGGGAGVASGNRWPRQ ETLALLKIRSDMDAAFRDATVKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKR TKEGRAGRQDGKSYKFFSQLEALHTTSSATAAANLSTPVTPVTAASTASLDVAPVSVG VHMPISSVRIPPATIPMSSSMLAMPGSAPASVPVPPVGAAPASGHPITTTAAPFGISF SSNSSSSSQGFEDDDDDDDEEDEPGGEPSNMAGTSRKRKRQSSRGGGSTTRRMMEFFE GLMKQVMQKQESMQQRFLEAIEKREQDRMIREEAWKRQEMARLTRDHELMAHERAIAA SRDAAIISFLQKITGQTVQLPTTVTVSAAPPPPTQPAVPVVPPPASIPTAASPLHHPP SLPQQQRSSQQQQQSVQPHHQHQQQPQAVHQQQHQAQPQNTEVVRHHQQPISSDVVMA IPEQQVPPQEIGRSGNLEPASSRWPKAEVLALINLRSGLESRYQEAGPKGPLWEEISA GMSRMGYKRSAKRCKEKWENINKYFKKVKESNKKRPEDAKTCPYFHQLDALHRKKILG GGTSGGFSSFSDQNRPQEETSQQHLDTSEAPPITAAPQSTQPTDQSENKTGATADVLT RKEGLPGSFCGEGNGEAAKKPEDIVMELMEDQGMHHQGQSLLVDGYGKIDEPDSDNMV HEEDEDEDEDDEDDDELEEERKMAYKIEYQRQNASTPNGGGNGAPSFLAMVQ" CDS join(28533035..28533432,28534406..28536113, 28536253..28536264) /locus_tag="TCM_015563" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002635" /codon_start=1 /product="Duplicated homeodomain-like superfamily protein, putative isoform 2" /protein_id="EOY23770.1" /db_xref="TAIR:AT1G33240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYZ9" /translation="MQQGGGEGGGGHQSQYGEMGAPTTAVATTTGAVSSSHMVSEQSE QLVEAASPISSRPPATGNLDEFMRLASGGGDDGGDEGDRAGGGGGGAGVASGNRWPRQ ETLALLKIRSDMDAAFRDATVKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKR TKEGRAGRQDGKSYKFFSQLEALHTTSSATAAANLSTPVTPVTAASTASLDVAPVSVG VHMPISSVRIPPATIPMSSSMLAMPGSAPASVPVPPVGAAPASGHPITTTAAPFGISF SSNSSSSSQGFEDDDDDDDEEDEPGGEPSNMAGTSRKRKRQSSRGGGSTTRRMMEFFE GLMKQVMQKQESMQQRFLEAIEKREQDRMIREEAWKRQEMARLTRDHELMAHERAIAA SRDAAIISFLQKITGQTVQLPTTVTVSAAPPPPTQPAVPVVPPPASIPTAASPLHHPP SLPQQQRSSQQQQQSVQPHHQHQQQPQAVHQQQHQAQPQNTEVVRHHQQPISSDVVMA IPEQQVPPQEIGRSGNLEPASSRWPKAEVLALINLRSGLESRYQEAGPKGPLWEEISA GMSRMGYKRSAKRCKEKWENINKYFKKVKESNKKRPEDAKTCPYFHQLDALHRKKILG GGTSGGFSSFSDQNRPQEETSQQHLDTSEAPPITAAPQSTQPTDQSENKTGATADVLT RKEGLPGSFCGEGNGEAAKKKTL" gene complement(28540229..28545239) /locus_tag="TCM_015564" /note="dbxref CacaoGD:Thecc1EG015564" mRNA complement(join(28540229..28540609,28540729..28540797, 28541537..28541623,28541912..28542019,28542091..28542181, 28543673..28543752,28543856..28543960,28544278..28544372, 28544472..28544550,28544657..28545239)) /locus_tag="TCM_015564" /product="TMPIT-like protein" /inference="alignment:exonerate- protein:2:ricco:30068.m002634" /inference="similar to AA sequence:Phytozome:GSVIVT01019720001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07634t00001" CDS complement(join(28540460..28540609,28540729..28540797, 28541537..28541623,28541912..28542019,28542091..28542181, 28543673..28543752,28543856..28543960,28544278..28544372, 28544472..28544550,28544657..28544887)) /locus_tag="TCM_015564" /codon_start=1 /product="TMPIT-like protein" /protein_id="EOY23771.1" /db_xref="Phytozome:GSVIVT01019720001" /db_xref="TAIR:AT4G10430.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TVW8" /translation="MEAVDESAKKLEEEVGRVVEQARELQESGASLISRISNEEQSLR QKANSLESSIRRLRSLINSLLSQKLLDPKLADKLEEDLLRARCIITDGDAAAFLPAKA QGRFLRMFLGPINVRASRKDVQLKVKEEYNSYRDRTAFLFLLFPLTLLILRSWIWEGC LPAFPVQLYQAWLLFLYTGLALRENILRANGSDIRPWWIYHHYCAMVMALVSLTWEIK GQPNCAQKQRGVELFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKANRMDVVWGETAG VDGQLWVLCPILFLMQGFEAYVGLLLLNTAFVGVVSEWQVIFCGILLVLMAVGNFMNT VQTLMAKSRFKAKMKRTKSKQELDYVVRNS" gene complement(28546699..28551303) /locus_tag="TCM_015565" /note="dbxref CacaoGD:Thecc1EG015565" mRNA complement(join(28546699..28546736,28546942..28547509, 28547604..28548071,28548175..28548472,28548668..28548878, 28549109..28549824,28550706..28550762,28550911..28551303)) /locus_tag="TCM_015565" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30068.m002633" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015106t1" /inference="similar to AA sequence:ricco:30068.m002633" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1333t3" CDS complement(join(28547281..28547509,28547604..28548071, 28548175..28548472,28548668..28548878,28549109..28549795)) /locus_tag="TCM_015565" /note="dbxref ricco:30068.m002633; paralog of Thecc1EG015106t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /protein_id="EOY23772.1" /db_xref="TAIR:AT1G33170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C884" /translation="MAKEYSGSPKHHQLEAKRKRLTWILGVSGLCILFYVLGAWQNST TPTTGSDVYSRVGCDGNATTSGDGNSPVNPSSTNLDFASHHQVEVDSSKTVSQFPPCD MSFSEYTPCQDKVRGRKFDRDMLKYRERHCPTKEELLLCLIPAPPKYKTPFKWPQSRD YAWYDNIPHRELSIEKAIQNWIQVEGDRFRFPGGGTMFPRGADAYIDDIGQLIPLTDG TIRTAVDTGCGVASFGAYLLKRNVLTMSIAPRDTHEAQVQFALERGVPAMIGIMGSQR LPYPARAFDLAHCSRCLIPWQKYDGLYLTEVDRILRPGGYWVLSGPPIHWKKYWRGWE RTQEDLKQEQDAIEDVAKRLCWKKVIENNDLSVWQKPINHIECIKSKKVIKTPHICKS DNPDTAWYRDLEACITPLPEVSSSDDVAGGAVEKWPERAFAVPPRISSGSIPGITAEK FREDNELWNDRVEHYKRIISLLPTGRYRNIMDMNAYLGGFAAALLKYPVWVMNVVPAN SDHNTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGLFSIYQDRCDITYILLEMD RILRPEGTVIFRDSVELLVKIKSITDGMRWKSQIMDHESGPFNPEKILVAVKTYWTGE ATEKQS" mobile_element complement(28552275..28552375) /note="source:CACAO_M_E44848_F172_scaffold_6 1910 1982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28552318..28552426 /note="source:scaffold_6_CACTA_0703 3470 3571" /mobile_element_type="transposon:TIR/CACTA" gene complement(28552464..28570039) /locus_tag="TCM_015566" /note="dbxref CacaoGD:Thecc1EG015566" mRNA complement(join(28552464..28553391,28553488..28553679, 28554967..28555044,28555360..28555478,28555691..28555797, 28556963..28557036,28557158..28557409,28558354..28558427, 28559176..28559233,28559328..28559391,28559495..28559589, 28559715..28559810,28560582..28560815,28561251..28561433, 28562378..28562475,28563533..28563620,28563762..28563864, 28564796..28564883,28565026..28565179,28565406..28565457, 28565575..28565654,28566579..28566944,28567044..28567113, 28567216..28567283,28567351..28567624,28567711..28567868, 28567953..28568048,28568132..28568555,28569931..28570039)) /locus_tag="TCM_015566" /product="ARM repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene01831" /inference="similar to AA sequence:Phytozome:GSVIVT01019707001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc55t21" CDS complement(join(28553377..28553391,28553488..28553679, 28554967..28555044,28555360..28555478,28555691..28555797, 28556963..28557036,28557158..28557409,28558354..28558427, 28559176..28559233,28559328..28559391,28559495..28559589, 28559715..28559810,28560582..28560815,28561251..28561433, 28562378..28562475,28563533..28563620,28563762..28563864, 28564796..28564883,28565026..28565179,28565406..28565457, 28565575..28565654,28566579..28566944,28567044..28567113, 28567216..28567283,28567351..28567624,28567711..28567868, 28567953..28568048,28568132..28568320)) /locus_tag="TCM_015566" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 1" /protein_id="EOY23773.1" /db_xref="Phytozome:GSVIVT01019707001" /db_xref="TAIR:AT4G38120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYZ6" /translation="MATSSSSLAASAAGARSWRTAFLTLRDETLSNPPSIHQLVQSLL FSHSHCSFIYAASDLPAHEVTSDLLFLIQLVANASQFQQDWIPTFSNTCHLIHDVSRR VSLDMNSSLWTLLLDSFTKMMDFFLAKKPSNAALYKPVLECLETLRYLVSANQRKCSL SDDIQLVNFLLHIIARSHVDLISLYRPSGNQKSAIEMGKKSPRYGSLWEVQTTTFTLL GEVYSRTGSSFPVDTWQSTIQILRKMMDSLASKNLVVEDIVMSRFYVSLLHCLHLVLM DPKGSISEHVSGFVASLRMFFVYGLTGGPQLMCAAVGSKENEPGSLSLKLTSEEPKKT NNTPYRPPHLRKKEGFNMRQAKAQDAQSSSDHDSSMVDITSSDSDYSDNDGSLNDINS SRCSKVRVSAIVCVQDLCQADPKSFTAQWTMLLPTNDVLQPRKFEATLMASLLYDPYL KARMASASALAVMMDGPATVFLQVAEYKESTKCESFMALSSSLGQILMQLHTGILYLI QHETNSRLLVLVFKILMLLISCTPYSRMPVELLPKVIMSLQARIEAGFPFKSDQTGLQ VAAISCLTAALSVSPLIQVKEMILEEVSTGSVEAEKKSGVLFTLLQHSERVSNPTICF EALQALRALSHNYPDLMLACWGQISAIVHKFLREASAEIPTKTWKEQAGNTVLFVGEK IVTSAIKVLDECLRAISGFKGTEDLSDEKFLDTPFTSDCIRIKKISSAPSYAPQSVED TNPSGIEQWAETIENHMPLVLWHASAMVRTASVTCFAGITSSVFFTLPKGNQEFVVSS LISAAMHDEVPSVRSAACRAIGVVSCFQKISESAEILGKFIHAVESNTRDPVVSVRIP ASWALANICDCFRHFDSDTNSQLVELLTECALHLTKDGDKIKSNAVRALGNLARFVRY SSSSCVHNKPVVNTGFSSTCNNVIMLSARSDPKALDGDDPASLKDLHRLESMVQAFIS CVTTGNVKVQWNVCHALSNLFLNKTIQLQDMDWAPSVFGILLLLLRDSSNFKIRIQAA AALAVPASALDYGKSFPDIIQGLEHVVENLCSDQISVPSSFKYRVALEKQLTSTMLHV LSLASATDHQPLKDFLVKKAFFLEDWFKMLCSSLRKTGAQPEIENDSIGNQKKAMISK ALQALIEVYDSKNQHTISQKFKKLFLRN" mobile_element complement(28554473..28554525) /note="source:INTACT94_F142_scaffold_5-int 5379 5432" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(28554837..28555044,28555360..28555478, 28555691..28555797,28556963..28557036,28557158..28557409, 28558354..28558427,28559176..28559233,28559328..28559386, 28559495..28559589,28559715..28559810,28560582..28560815, 28561251..28561433,28562378..28562475,28563533..28563620, 28563762..28563864,28564796..28564883,28565026..28565179, 28565406..28565457,28565575..28565654,28566579..28566944, 28567044..28567113,28567216..28567283,28567351..28567624, 28567711..28567868,28567953..28568048,28568132..28568538)) /locus_tag="TCM_015566" /product="ARM repeat superfamily protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene01831" /inference="similar to AA sequence:Phytozome:GSVIVT01019707001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc55t12; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc55t21; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8436t3" CDS complement(join(28559356..28559386,28559495..28559589, 28559715..28559810,28560582..28560815,28561251..28561433, 28562378..28562475,28563533..28563620,28563762..28563864, 28564796..28564883,28565026..28565179,28565406..28565457, 28565575..28565654,28566579..28566944,28567044..28567113, 28567216..28567283,28567351..28567624,28567711..28567868, 28567953..28568048,28568132..28568320)) /locus_tag="TCM_015566" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 2" /protein_id="EOY23774.1" /db_xref="Phytozome:GSVIVT01019707001" /db_xref="TAIR:AT4G38120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYZ6" /translation="MATSSSSLAASAAGARSWRTAFLTLRDETLSNPPSIHQLVQSLL FSHSHCSFIYAASDLPAHEVTSDLLFLIQLVANASQFQQDWIPTFSNTCHLIHDVSRR VSLDMNSSLWTLLLDSFTKMMDFFLAKKPSNAALYKPVLECLETLRYLVSANQRKCSL SDDIQLVNFLLHIIARSHVDLISLYRPSGNQKSAIEMGKKSPRYGSLWEVQTTTFTLL GEVYSRTGSSFPVDTWQSTIQILRKMMDSLASKNLVVEDIVMSRFYVSLLHCLHLVLM DPKGSISEHVSGFVASLRMFFVYGLTGGPQLMCAAVGSKENEPGSLSLKLTSEEPKKT NNTPYRPPHLRKKEGFNMRQAKAQDAQSSSDHDSSMVDITSSDSDYSDNDGSLNDINS SRCSKVRVSAIVCVQDLCQADPKSFTAQWTMLLPTNDVLQPRKFEATLMASLLYDPYL KARMASASALAVMMDGPATVFLQVAEYKESTKCESFMALSSSLGQILMQLHTGILYLI QHETNSRLLVLVFKILMLLISCTPYSRMPVELLPKVIMSLQARIEAGFPFKSDQTGLQ VAAISCLTAALSVSPLIQVKEMILEEVSTGSVEAEKKSGVLFTLLQHSERVSNPTICF EALQALRALSHNYPDLMLACWGQISAIVHKFLREASAEIPTKTWKEQAGNTVLFVGEK IVTSAIKVLDECLRAISGFKGTEDLSDEKFLDTPFTSDCIRIKKISSAPSYAPQSVED TNPSGIEQWAETIENHMPLVLWHASAMVRTASVTCFAGITSSVFFTLPKGNQEFVVSS LISAAMHDEVPSVRSAACRAIGVVSCFQKISERDPWQVYPCC" mobile_element 28561823..28561870 /note="source:CACAO_Mutator_E39_scaffold_1 5915 5963" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(28568750..28570000) /note="source:scaffold_5_CACTA_0615 984 2263" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28568981..28569985 /note="source:scaffold_5_CACTA_0607 4851 5870" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28569996..28570693 /note="source:scaffold_5_CACTA_0615 1571 2257" /mobile_element_type="transposon:TIR/CACTA" gene 28573537..28576700 /locus_tag="TCM_015567" /note="dbxref CacaoGD:Thecc1EG015567" mRNA join(28573537..28574361,28576563..28576700) /locus_tag="TCM_015567" /product="RING-H2 finger protein ATL79, putative" /inference="alignment:exonerate- protein:2:ricco:30068.m002631" /inference="similar to AA sequence:ricco:30068.m002631" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1944t4" CDS 28573700..28574335 /locus_tag="TCM_015567" /note="dbxref ricco:30068.m002631" /codon_start=1 /product="RING-H2 finger protein ATL79, putative" /protein_id="EOY23775.1" /db_xref="TAIR:AT5G47610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGJ6" /translation="MRPPPAETAQHLIHMSPPLSSGEPQLSSTSTSTCNPHTCGWRPY SSSNDFEANAAMVLIILFCALICSLALNAAIRCFLRGGGGRPRQFRHNNIPQTQQELE QRKPVPEVAAASMVAAPTLVYTTGLKLAGAEAECAICLSEFVEGEGIQVLAKCKHGFH VQCIQQWLSSHFSCPTCRSSCLSPSPSSEETTHQCVDSSSQTVMPEREREP" gene complement(28575182..28578699) /locus_tag="TCM_015568" /note="dbxref CacaoGD:Thecc1EG015568" mRNA complement(join(28575182..28575929,28576334..28576947, 28577034..28577427,28577519..28577591,28578375..28578699)) /locus_tag="TCM_015568" /product="Actin 7 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s45780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001364t2" /inference="similar to AA sequence:frave:gene26612" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9600t2" mRNA complement(join(28575577..28575929,28576334..28576947, 28577034..28577427,28577519..28577591,28578511..28578654)) /locus_tag="TCM_015568" /product="Actin 7 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s45780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001364t2" /inference="similar to AA sequence:frave:gene26612" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8430t1; alternateUTRof:Thecc1EG015568t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9600t2" CDS complement(join(28575864..28575929,28576334..28576947, 28577034..28577427,28577519..28577578)) /locus_tag="TCM_015568" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene26612; paralog of Thecc1EG001364t2" /codon_start=1 /product="Actin 7 isoform 1" /protein_id="EOY23776.1" /db_xref="TAIR:AT5G09810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P53496" /translation="MADTEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDG VSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTERGYSFTTTAEREIVRDIKEKL AYVALDFEQELETAKSSSSIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGI HETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP PERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF" CDS complement(join(28575864..28575929,28576334..28576947, 28577034..28577427,28577519..28577578)) /locus_tag="TCM_015568" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene26612; paralog of Thecc1EG001364t2" /codon_start=1 /product="Actin 7 isoform 1" /protein_id="EOY23777.1" /db_xref="TAIR:AT5G09810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P53496" /translation="MADTEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDG VSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTERGYSFTTTAEREIVRDIKEKL AYVALDFEQELETAKSSSSIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGI HETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP PERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF" gene 28579995..28581708 /locus_tag="TCM_015569" /note="dbxref CacaoGD:Thecc1EG015569" mRNA join(28579995..28580275,28581319..28581708) /locus_tag="TCM_015569" /product="Tumor necrosis factor receptor superfamily member 21" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019710001" /inference="similar to AA sequence:ricco:30068.m002629" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9528t1" CDS join(28580057..28580275,28581319..28581546) /locus_tag="TCM_015569" /note="dbxref ricco:30068.m002629" /codon_start=1 /product="Tumor necrosis factor receptor superfamily member 21" /protein_id="EOY23778.1" /db_xref="TAIR:AT1G73940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9B5" /translation="MWLAGVVKNSIKGGHGSIGSLLVRYMSRSRAVNVRKINPKVPIP EARSIATSLYDIIKDHGPLTVSNTWIHAKEAGIGGLNSKTHMKIMLKWMRGRRMLKLF CNQVGSSKKFLHCTLPEEPQTNQLESPSELKLQTKKPSQKRKKKSK" gene 28583278..28586989 /locus_tag="TCM_015570" /note="dbxref CacaoGD:Thecc1EG015570" mRNA join(28583278..28583588,28584101..28584195, 28584536..28584649,28584731..28584961,28585734..28586019, 28586110..28586260,28586338..28586989) /locus_tag="TCM_015570" /product="Cinnamyl-alcohol dehydrogenase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019711001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000949t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019711001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b015046t1a2; alternateUTRof:Thecc1EG015570t1; inference alignment:Newbler:10:TSA:cgbaP1_g02818t00001" mRNA join(28583278..28583634,28584101..28584195, 28584536..28584649,28584731..28584961,28585734..28586019, 28586110..28586260,28586338..28586822) /locus_tag="TCM_015570" /product="Cinnamyl-alcohol dehydrogenase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019711001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000949t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019711001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02818t00001" mRNA join(28583383..28583588,28584101..28584195, 28584536..28584649,28584731..28584961,28585734..28586019, 28586110..28586263,28586338..28586989) /locus_tag="TCM_015570" /product="Cinnamyl-alcohol dehydrogenase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019711001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000949t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019711001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8421t1; inference alignment:Newbler:10:TSA:cgbaP1_g02818t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc572t3_C2" mRNA join(28583627..28584195,28584536..28584649, 28584731..28584961,28585734..28586019,28586110..28586260, 28586338..28586883) /locus_tag="TCM_015570" /product="Cinnamyl-alcohol dehydrogenase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019711001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000949t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019711001" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc572t7_C2; alternateUTRof:Thecc1EG015570t1; inference alignment:Newbler:10:TSA:cgbaP1_g02818t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc572t3_C2" mRNA join(28583627..28583634,28584101..28584195, 28584536..28584649,28584731..28584961,28585734..28586019, 28586138..28586260,28586338..28586883) /locus_tag="TCM_015570" /product="Cinnamyl alcohol dehydrogenase 1 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019711001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001323t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019711001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc572t6_C2; inference alignment:Newbler:10:TSA:cgbaP1_g02818t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc572t3_C2" mRNA join(28583655..28584195,28584536..28584649, 28584731..28584961,28585734..28586019,28586110..28586260, 28586338..28586884) /locus_tag="TCM_015570" /product="Cinnamyl-alcohol dehydrogenase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019711001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000949t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019711001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b015046t1a3; alternateUTRof:Thecc1EG015570t1; inference alignment:Newbler:10:TSA:cgbaP1_g02818t00001" mRNA join(28583683..28583934,28584101..28584195, 28584536..28584649,28584731..28584961,28585734..28586019, 28586110..28586260,28586338..28586884) /locus_tag="TCM_015570" /product="Cinnamyl-alcohol dehydrogenase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019711001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000949t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019711001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05002t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc572t3_C2; inference alignment:Newbler:10:TSA:cgbaP1_g02818t00001" CDS join(28583923..28583934,28584101..28584195, 28584536..28584649,28584731..28584961,28585734..28586019, 28586110..28586260,28586338..28586534) /locus_tag="TCM_015570" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG000949t1" /codon_start=1 /product="Cinnamyl-alcohol dehydrogenase isoform 3" /protein_id="EOY23781.1" /db_xref="Phytozome:GSVIVT01019711001" /db_xref="TAIR:AT1G72680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAI3" /translation="MDARLTMDSQTKTEDCLGWAARDPSGALSPYKFSRRPLGSDDVS LKITHCGVCYADVIWSRNKNGDSMYPLVPGHEIAGVVKEVGSNVCRFKVGDPVGVGTY VNSCRDCEYCNDGVEVHCVKGSVFTFNGIDEDGTVTKGGYSSYIVVHERYCFRIPSNY PLASAAPLLCAGITVYAPMMRHNMNHSGKSLGVIGLGGLGHMAVKFGKAFGLHVTVFS TSISKKEEALNLLGADKFVVSSDQEQMKGLSKSLDFIVDTASGNHPFDPYMSLLKISG VYVLVGFPSEVKFSPASLNMGMRTVSGSITGGTKVTQEMIDFCAAHNIYPQIEVIPIQ YANEALERLIKRDVKYRFVIDIENTLK" CDS join(28584107..28584195,28584536..28584649, 28584731..28584961,28585734..28586019,28586110..28586263, 28586338..28586534) /locus_tag="TCM_015570" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG000949t1" /codon_start=1 /product="Cinnamyl-alcohol dehydrogenase isoform 4" /protein_id="EOY23782.1" /db_xref="Phytozome:GSVIVT01019711001" /db_xref="TAIR:AT1G72680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAI3" /translation="MDSQTKTEDCLGWAARDPSGALSPYKFSRRPLGSDDVSLKITHC GVCYADVIWSRNKNGDSMYPLVPGHEIAGVVKEVGSNVCRFKVGDPVGVGTYVNSCRD CEYCNDGVEVHCVKGSVFTFNGIDEDGTVTKGGYSSYIVVHERYCFRIPSNYPLASAA PLLCAGITVYAPMMRHNMNHSGKSLGVIGLGGLGHMAVKFGKAFGLHVTVFSTSISKK EEALNLLGADKFVVSSDQEQMKGLSKSLDFIVDTASGNHPFDPYMSLLKISGVYVLVG FPSEVKFSPASLNMGSMRTVSGSITGGTKVTQEMIDFCAAHNIYPQIEVIPIQYANEA LERLIKRDVKYRFVIDIENTLK" CDS join(28584107..28584195,28584536..28584649, 28584731..28584961,28585734..28586019,28586110..28586260, 28586338..28586534) /locus_tag="TCM_015570" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG000949t1" /codon_start=1 /product="Cinnamyl-alcohol dehydrogenase isoform 1" /protein_id="EOY23779.1" /db_xref="Phytozome:GSVIVT01019711001" /db_xref="TAIR:AT1G72680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAI3" /translation="MDSQTKTEDCLGWAARDPSGALSPYKFSRRPLGSDDVSLKITHC GVCYADVIWSRNKNGDSMYPLVPGHEIAGVVKEVGSNVCRFKVGDPVGVGTYVNSCRD CEYCNDGVEVHCVKGSVFTFNGIDEDGTVTKGGYSSYIVVHERYCFRIPSNYPLASAA PLLCAGITVYAPMMRHNMNHSGKSLGVIGLGGLGHMAVKFGKAFGLHVTVFSTSISKK EEALNLLGADKFVVSSDQEQMKGLSKSLDFIVDTASGNHPFDPYMSLLKISGVYVLVG FPSEVKFSPASLNMGMRTVSGSITGGTKVTQEMIDFCAAHNIYPQIEVIPIQYANEAL ERLIKRDVKYRFVIDIENTLK" CDS join(28584107..28584195,28584536..28584649, 28584731..28584961,28585734..28586019,28586110..28586260, 28586338..28586534) /locus_tag="TCM_015570" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG000949t1" /codon_start=1 /product="Cinnamyl-alcohol dehydrogenase isoform 1" /protein_id="EOY23780.1" /db_xref="Phytozome:GSVIVT01019711001" /db_xref="TAIR:AT1G72680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAI3" /translation="MDSQTKTEDCLGWAARDPSGALSPYKFSRRPLGSDDVSLKITHC GVCYADVIWSRNKNGDSMYPLVPGHEIAGVVKEVGSNVCRFKVGDPVGVGTYVNSCRD CEYCNDGVEVHCVKGSVFTFNGIDEDGTVTKGGYSSYIVVHERYCFRIPSNYPLASAA PLLCAGITVYAPMMRHNMNHSGKSLGVIGLGGLGHMAVKFGKAFGLHVTVFSTSISKK EEALNLLGADKFVVSSDQEQMKGLSKSLDFIVDTASGNHPFDPYMSLLKISGVYVLVG FPSEVKFSPASLNMGMRTVSGSITGGTKVTQEMIDFCAAHNIYPQIEVIPIQYANEAL ERLIKRDVKYRFVIDIENTLK" CDS join(28584107..28584195,28584536..28584649, 28584731..28584961,28585734..28586019,28586110..28586260, 28586338..28586534) /locus_tag="TCM_015570" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG000949t1" /codon_start=1 /product="Cinnamyl-alcohol dehydrogenase isoform 1" /protein_id="EOY23784.1" /db_xref="Phytozome:GSVIVT01019711001" /db_xref="TAIR:AT1G72680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAI3" /translation="MDSQTKTEDCLGWAARDPSGALSPYKFSRRPLGSDDVSLKITHC GVCYADVIWSRNKNGDSMYPLVPGHEIAGVVKEVGSNVCRFKVGDPVGVGTYVNSCRD CEYCNDGVEVHCVKGSVFTFNGIDEDGTVTKGGYSSYIVVHERYCFRIPSNYPLASAA PLLCAGITVYAPMMRHNMNHSGKSLGVIGLGGLGHMAVKFGKAFGLHVTVFSTSISKK EEALNLLGADKFVVSSDQEQMKGLSKSLDFIVDTASGNHPFDPYMSLLKISGVYVLVG FPSEVKFSPASLNMGMRTVSGSITGGTKVTQEMIDFCAAHNIYPQIEVIPIQYANEAL ERLIKRDVKYRFVIDIENTLK" CDS join(28584107..28584195,28584536..28584649, 28584731..28584961,28585734..28586019,28586110..28586260, 28586338..28586534) /locus_tag="TCM_015570" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG000949t1" /codon_start=1 /product="Cinnamyl-alcohol dehydrogenase isoform 1" /protein_id="EOY23785.1" /db_xref="Phytozome:GSVIVT01019711001" /db_xref="TAIR:AT1G72680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAI3" /translation="MDSQTKTEDCLGWAARDPSGALSPYKFSRRPLGSDDVSLKITHC GVCYADVIWSRNKNGDSMYPLVPGHEIAGVVKEVGSNVCRFKVGDPVGVGTYVNSCRD CEYCNDGVEVHCVKGSVFTFNGIDEDGTVTKGGYSSYIVVHERYCFRIPSNYPLASAA PLLCAGITVYAPMMRHNMNHSGKSLGVIGLGGLGHMAVKFGKAFGLHVTVFSTSISKK EEALNLLGADKFVVSSDQEQMKGLSKSLDFIVDTASGNHPFDPYMSLLKISGVYVLVG FPSEVKFSPASLNMGMRTVSGSITGGTKVTQEMIDFCAAHNIYPQIEVIPIQYANEAL ERLIKRDVKYRFVIDIENTLK" CDS join(28584107..28584195,28584536..28584649, 28584731..28584961,28585734..28586019,28586138..28586188) /locus_tag="TCM_015570" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG001323t1" /codon_start=1 /product="Cinnamyl alcohol dehydrogenase 1 isoform 5" /protein_id="EOY23783.1" /db_xref="Phytozome:GSVIVT01019711001" /db_xref="TAIR:AT1G72680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAI3" /translation="MDSQTKTEDCLGWAARDPSGALSPYKFSRRPLGSDDVSLKITHC GVCYADVIWSRNKNGDSMYPLVPGHEIAGVVKEVGSNVCRFKVGDPVGVGTYVNSCRD CEYCNDGVEVHCVKGSVFTFNGIDEDGTVTKGGYSSYIVVHERYCFRIPSNYPLASAA PLLCAGITVYAPMMRHNMNHSGKSLGVIGLGGLGHMAVKFGKAFGLHVTVFSTSISKK EEALNLLGADKFVVSSDQEQMKLTLHLVIIRLIPTCHS" gene complement(28587282..28589586) /locus_tag="TCM_015571" /note="dbxref CacaoGD:Thecc1EG015571" mRNA complement(join(28587282..28587745,28587879..28588030, 28588231..28588389,28588492..28588750,28588865..28589044, 28589196..28589586)) /locus_tag="TCM_015571" /product="Nodulin MtN21 /EamA-like transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15150.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015573t3" /inference="similar to AA sequence:Phytozome:GSVIVT01019715001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2046t4" CDS complement(join(28587559..28587745,28587879..28588030, 28588231..28588389,28588492..28588750,28588865..28589044, 28589196..28589389)) /locus_tag="TCM_015571" /note="paralog of Thecc1EG015573t3" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein" /protein_id="EOY23786.1" /db_xref="Phytozome:GSVIVT01019715001" /db_xref="TAIR:AT5G07050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0N9" /translation="MFGKGITMKNFGLCVAMVLLQSSYGASVILVKVAFERGLNQFVF VAYRHIIAMFVLGPFAYVREREQRPSLSCSLFAKIFLLSSLGTTIYFNVFYFGLTYTS PTVASALNNVIPSLTFLMAVLLRMETVKIRSAGRQAKVLGTIISIGGSLVFTLWKGGC QLKGFVDGPLINIHSTKGSVGELRHGKENWLKGSCLILISTIAWSGWLILHGTVSKVY PAELSLNALICFIASLQSSLVALFFARNRLLWRLEWNVQLLTIIYCGVMATALANYIQ IRCISYMGPVFASTFTPLCAVIVAIFSAIAFAERLHLGSLVGACLIIVGLYIVLWGKR TDNLMTGNAEDKDDLGDGRTLEISENACTATTDKSIASELKC" gene 28590385..28591646 /locus_tag="TCM_015572" /note="dbxref CacaoGD:Thecc1EG015572" mRNA join(28590385..28590502,28590911..28591249, 28591334..28591468,28591553..28591646) /locus_tag="TCM_015572" /product="Cinnamyl-alcohol dehydrogenase, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015570t3" /inference="similar to AA sequence:Phytozome:Glyma15g06460.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS join(28591046..28591249,28591334..28591468, 28591553..28591585) /locus_tag="TCM_015572" /note="paralog of Thecc1EG015570t3" /codon_start=1 /product="Cinnamyl-alcohol dehydrogenase, putative" /protein_id="EOY23787.1" /db_xref="Phytozome:Glyma15g06460.1" /db_xref="TAIR:AT1G72680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAI3" /translation="MLRHNMNQPGKYIEVIGLGGLGHMAVKFGKAFGLHVAVFSTSIA KKEEALNLLGADKIVVSSDQEQMMGLEKSLVFRVGTATGDHPFNPYMSLLKSFKRSQV KSNSVLQVFMQACNWFIAIKL" gene complement(28591655..28594209) /locus_tag="TCM_015573" /note="dbxref CacaoGD:Thecc1EG015573" mRNA complement(join(28591655..28592142,28592252..28592269, 28592346..28592497,28592596..28592754,28592860..28593118, 28593234..28593413,28593632..28594209)) /locus_tag="TCM_015573" /product="Nodulin MtN21 /EamA-like transporter family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15150.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015571t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019715001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3619t1" mRNA complement(join(28591752..28592142,28592346..28592497, 28592596..28592754,28592860..28593118,28593234..28593413, 28593632..28593832)) /locus_tag="TCM_015573" /product="Nodulin MtN21 /EamA-like transporter family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15150.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015571t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019715001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2547t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3619t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4318t2" mRNA complement(join(28591752..28592269,28592346..28592497, 28592596..28592754,28592860..28593118,28593234..28593413, 28593632..28593832)) /locus_tag="TCM_015573" /product="Nodulin MtN21 /EamA-like transporter family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15150.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015571t1" /inference="similar to AA sequence:ricco:30068.m002626" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2547t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4318t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3619t1" CDS complement(join(28591956..28592142,28592346..28592497, 28592596..28592754,28592860..28593118,28593234..28593413, 28593632..28593804)) /locus_tag="TCM_015573" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015571t1" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein isoform 3" /protein_id="EOY23790.1" /db_xref="Phytozome:GSVIVT01019715001" /db_xref="TAIR:AT2G39510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0N9" /translation="MKNCGFIVAMVVVQFAYGGSNILIKIALERGLNQFVLIVYRHII AMLLLAPPAYVLERKERPSLSVSVFGKIFLLSSLGTTIHLNVYYAGLAYTSPTVATAL GNVIPSLTFVMAVLLRMEKVKIKSARGGAKVLGTVICIGGSLVFTFWRGGFQSKGFVD RPLINIHNTNASHGEFRHGNESWIKGSALFLVSYIAWSGWLILQATASKVYPAQLSLN VLICFIASLQSSVLALFFARNPLLWKLQWNVQLLTIIYSGVVLSALVYYLQTWCISNK GPVFAAMFTPLLLVFVALFSAIVFAERLHLGSLVGAFLIILGLYLVLWAKRRDSFVSG NTKDGDDFPDDKKLVISTINCTLASDKSVKVEAIN" CDS complement(join(28591956..28592142,28592252..28592269, 28592346..28592497,28592596..28592754,28592860..28593118, 28593234..28593413,28593632..28593804)) /locus_tag="TCM_015573" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015571t1" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein isoform 1" /protein_id="EOY23788.1" /db_xref="Phytozome:GSVIVT01019715001" /db_xref="TAIR:AT2G39510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0N9" /translation="MKNCGFIVAMVVVQFAYGGSNILIKIALERGLNQFVLIVYRHII AMLLLAPPAYVLERKERPSLSVSVFGKIFLLSSLGTTIHLNVYYAGLAYTSPTVATAL GNVIPSLTFVMAVLLRMEKVKIKSARGGAKVLGTVICIGGSLVFTFWRGGFQSKGFVD RPLINIHNTNASHGEFRHGNESWIKGSALFLVSYIAWSGWLILQATASKVYPAQLSLN VLICFIASLQSSVLALFFARNPLLWKLQWNVQLLTIIYSGVVLSALVYYLQTWCISNK GPVFAAMFTPLLLVFVALFSAIVFAERLHLGRQFTASSLVGAFLIILGLYLVLWAKRR DSFVSGNTKDGDDFPDDKKLVISTINCTLASDKSVKVEAIN" CDS complement(join(28592209..28592269,28592346..28592497, 28592596..28592754,28592860..28593118,28593234..28593413, 28593632..28593804)) /locus_tag="TCM_015573" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002626; paralog of Thecc1EG015571t1" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein isoform 2" /protein_id="EOY23789.1" /db_xref="TAIR:AT5G07050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0N9" /translation="MKNCGFIVAMVVVQFAYGGSNILIKIALERGLNQFVLIVYRHII AMLLLAPPAYVLERKERPSLSVSVFGKIFLLSSLGTTIHLNVYYAGLAYTSPTVATAL GNVIPSLTFVMAVLLRMEKVKIKSARGGAKVLGTVICIGGSLVFTFWRGGFQSKGFVD RPLINIHNTNASHGEFRHGNESWIKGSALFLVSYIAWSGWLILQATASKVYPAQLSLN VLICFIASLQSSVLALFFARNPLLWKLQWNVQLLTIIYSGVVLSALVYYLQTWCISNK GPVFAAMFTPLLLVFVALFSAIVFAERLHLGRQFTASSYFLTSVKKISPTK" mobile_element complement(28593905..28594045) /note="source:INTACT606_F271_scaffold_5-int 3617 3793" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(28594281..28594933) /locus_tag="TCM_015574" /note="dbxref CacaoGD:Thecc1EG015574" mRNA complement(28594281..28594933) /locus_tag="TCM_015574" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage" CDS complement(28594423..28594656) /locus_tag="TCM_015574" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23791.1" /translation="MLMSCAGQRKPRNVLFLCLRRIPALPGLKMLNYILLQGCLFLKQ NGFSTKEETINEKIVSELSENQLRTSAGIIFVS" mobile_element 28595597..28595968 /note="source:CACAO_Mariner_E38_scaffold_2 1314 1716" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(28596269..28598307) /locus_tag="TCM_015575" /note="dbxref CacaoGD:Thecc1EG015575" mRNA complement(join(28596269..28597113,28597192..28597360, 28597756..28598303)) /locus_tag="TCM_015575" /product="60S ribosomal protein L9-1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15080.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400043765" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10267t1" mRNA complement(join(28596479..28597113,28597192..28597314, 28597857..28598307)) /locus_tag="TCM_015575" /product="Ribosomal protein L6 family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15080.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400043765" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10267t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10267t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc924t2" CDS complement(join(28597027..28597113,28597192..28597314, 28597857..28598231)) /locus_tag="TCM_015575" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ribosomal protein L6 family isoform 2" /protein_id="EOY23793.1" /db_xref="Phytozome:PGSC0003DMP400043765" /db_xref="TAIR:AT1G33140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P49209" /translation="MKTILSSETMDIPDGVSIKVKAKLIEVEGPRGKLTRNFKHLNLD FHLIKDEETGKRKLRIEAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHF PINASITNGNKSIEIRNFLGEKKVRKVDMLEGVSIVRSEKVKDEIVLDGNDIELVSRS AALINQKCHVKNKDIRKFLDGIYVSEKGRIVEEE" CDS complement(join(28597027..28597113,28597192..28597360, 28597756..28598231)) /locus_tag="TCM_015575" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="60S ribosomal protein L9-1 isoform 1" /protein_id="EOY23792.1" /db_xref="Phytozome:PGSC0003DMP400043765" /db_xref="TAIR:AT1G33140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P49209" /translation="MKTILSSETMDIPDGVSIKVKAKLIEVEGPRGKLTRNFKHLNLD FHLIKDEETGKRKLRIEAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHF PINASITNGNKSIEIRNFLGEKKVLSRYMSAYIYIGPESFRYRCFFSCFSFRFKECIC FFILIWICLLVLHQVRKVDMLEGVSIVRSEKVKDEIVLDGNDIELVSRSAALINQKCH VKNKDIRKFLDGIYVSEKGRIVEEE" gene complement(28598403..28609466) /locus_tag="TCM_015576" /note="dbxref CacaoGD:Thecc1EG015576" mRNA complement(join(28598403..28600015,28600456..28600497, 28601031..28601208,28601336..28601452,28601629..28601767, 28601962..28602004,28602096..28602183,28602845..28603470, 28603569..28603796,28603949..28604500,28605018..28605323, 28605951..28606005,28606295..28606378,28606482..28606715, 28609336..28609466)) /locus_tag="TCM_015576" /product="Nucleoporin autopeptidase, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G10390.1" /inference="similar to AA sequence:TAIR:AT1G10390.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8610t4" CDS complement(join(28599324..28600015,28600456..28600497, 28601031..28601208,28601336..28601452,28601629..28601767, 28601962..28602004,28602096..28602183,28602845..28603470, 28603569..28603796,28603949..28604500,28605018..28605323, 28605951..28605969)) /locus_tag="TCM_015576" /codon_start=1 /product="Nucleoporin autopeptidase, putative" /protein_id="EOY23794.1" /db_xref="TAIR:AT1G10390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0P2" /translation="MFGSTNPFGQSSSSPFASQSVFGQTNNASTNPFAPKPSFGSPTP FGSQTGGSIFGGTSTGVFGAAQSSSPFSSTTAFGASSSPAFGSSIPAFGSSSTTAFGS SSSSFGGSSVFGQKPAFGFGSTPTQSSPFGSTAQQSQPAFGSGIFGSSTPFGSTQSAF GSSTPAFGATSTPAFGATSTPAFGATSTPAFGATSTPAFGSTGSPAFGSTGTAFGVSN APVFGSGGTFGASSIPAFGTSSTPAFGASSTPAFGASSIPSFSFGSSPAFAQSTSAFG SSPFGTTAFGAQSSPFGAQSSAPAFGSTSFGQSPFGGQRGGSRVAPYTPTTEADSGSG TQPAAKLESISAMPVYKDKSHEELRWEDYQLGDKGGPQPAAQPSGGIGFGVSTAPTSP FISSSTFGQTSANPFSGTSNNPFSIKPPSFNSTGFTTSTTASNPFQSTSSSLFGPTSS TTPSIFSSSSTPTFGTGSSLFSSSITPSFSTSPSIFGTGAAPTTTPAFATGLNFSSSQ TSPLFNSTPAIGQTGNAFGQVSSTFGQNSSNFGQTNIFNTPSTGFSGTLFSSSLSLAP SSNSAAFGPTTPSFASPFQPAPPAQTSGAFSFSNFGQTQSGGGSGIFGQSNIGQSPAT QSAAVVQPMTITNPYGILPAMPQMSIGRAGTAPSIQYGISSMPVVDKPAPIRISPLLT SRYLSQRRIRLPARKYRPNNDSPKVPFFSDDEETPSTPKADAVFIPRENPRALVIRPT ENWSSRASAEKASPLKDASTPVHENGKISDDGSNAEDKDKNPAENGIAKERIHPVRGN QKANGVHDDHSAQKEDSYMTLSGHRAGEAAIVYEHGADIEALMPKLRRSDYYTEPRIQ ELAAKERAEPGYCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMD DSKKPPVGQGLNKPAEVTLLNIKCFDKKTGRQYTEGPKVEKYKEMLKRKAEDQGAEFL SYDPIKGEWKFRVNHFSAYKLEDEEEHYSETCAVSDC" mobile_element complement(28607091..28607416) /note="source:CACAO_on_E446_scaffold_2 954 1299" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28607317..28607448 /note="source:scaffold_2_CACTA_0277 4762 4894" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28607820..28608360 /note="source:scaffold_4_CACTA_0511 12928 13479" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28608378..28608782) /note="source:CACAO_on_E69_scaffold_9 9 435" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(28608784..28608799) /note="source:scaffold_7_CACTA_0795 2921 2991" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28608800..28608903) /note="source:CACAO_Mariner_E220_scaffold_9 9005 9116" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(28608904..28608916) /note="source:scaffold_7_CACTA_0795 2851 2920" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28608950..28609058) /note="source:CACAO_M_E57346_F74_scaffold_9 5051 5145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28608965..28609960 /note="source:INTACT60_F127_scaffold_9-int 1 982" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28609569..28616773 /locus_tag="TCM_015579" /note="dbxref CacaoGD:Thecc1EG015579" mRNA join(28609569..28609583,28610977..28611106, 28611962..28612267,28615507..28616773) /locus_tag="TCM_015579" /product="AP2/ERF domain-containing transcription factor, putative" /inference="alignment:exonerate- protein:2:ricco:30068.m002623" /inference="similar to AA sequence:ricco:30068.m002623" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5061t1" mobile_element complement(28610671..28610864) /note="source:INTACT52F_F339_scaffold_1-int 220 402" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28610970..28611108 /note="source:INTACT60_F127_scaffold_9-int 1984 2349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28611109..28611687) /note="source:CACAO_on_S_E46_scaffold_2 17259 17831" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(28612163..28612264) /note="source:INTACT1330F_F382_scaffold_8-int 12735 12834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28613927..28613984 /note="source:CACAO_M_S_E6117_F51_scaffold_2 1131 1191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28614289..28614673) /note="source:scaffold_1_CACTA_0008 14057 14403" /mobile_element_type="transposon:TIR/CACTA" CDS 28615703..28616728 /locus_tag="TCM_015579" /note="dbxref ricco:30068.m002623" /codon_start=1 /product="AP2/ERF domain-containing transcription factor, putative" /protein_id="EOY23795.1" /db_xref="TAIR:AT5G19790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJI7" /translation="MGAPSSSNGVRGRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQ KVRLWLGTFDTAEEAARAYDDAARALRGANARTNFELPQSASSTCGNRVSLDNMQPFS FEEVCGTGSDADGFLGALKAKLLDGKGLRVLSPASCAGLQPSVASSSPHNNSNVSRKS GATTVAPQGIGNMNPVQGPVNPGFSKPDLVVNQDHEHDDQAAAGHIGVQWHQPGQSQT ASIASMMWSNEPSYEAAWGTQMNQVPPNGLFNITTCTTATSTWPLSGTTESTMDLSYS DQCTIEMQMNMNGKANMVSMPISQIDGTTEGVWPSEQQFVHSDNNGWSGANGSWDPYI YVSSVLG" mobile_element complement(28619178..28619243) /note="source:scaffold_2_CACTA_0248 11727 11793" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28619270..28619329) /note="source:scaffold_2_CACTA_0248 11727 11786" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28619434..28619499) /note="source:scaffold_2_CACTA_0248 11727 11793" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28619509..28619633) /note="source:scaffold_2_CACTA_0248 11655 11793" /mobile_element_type="transposon:TIR/CACTA" gene 28619575..28623234 /locus_tag="TCM_015580" /note="dbxref CacaoGD:Thecc1EG015580" mRNA join(28619575..28619638,28620184..28620750, 28621016..28621078,28621173..28621289,28621402..28621816, 28622601..28622752,28622848..28623234) /locus_tag="TCM_015580" /product="Nodulin MtN21 /EamA-like transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005002t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s15200.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8456t2" CDS join(28620560..28620750,28621016..28621078, 28621173..28621289,28621402..28621816,28622601..28622752, 28622848..28623025) /locus_tag="TCM_015580" /note="paralog of Thecc1EG005002t1" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein" /protein_id="EOY23796.1" /db_xref="Phytozome:POPTR_0011s15200.1" /db_xref="TAIR:AT3G30340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T7X5" /translation="MAELKSCAEWKPFIAMIAIDFLFAVVNILLKKVLDEGMNHLVLI TFRLTISTIFLAPIGYFWERNSRPKLTPRILCYLFCSAIVGASLTQYFFLLGIQYTSA TFACAFVNMVPVLTFIMALPFRIETVNLKSNGGRAKILGSVICVGGALLLTLYKGMPL FKHPRSQALAPTMANAIKLSSSRRAERWTIGCLALIVGTMLWSSWFIIQSHVGKRYPC QYSSTAIMSFFGAIQSALLSLSTSRDLSIWVLRGKVEIITVLYSGMIGSGLCYVGMAW CVKKRGPVFTAAFSPLVQIMAAMFDIPILHEQLNLGSLLGSIVVIIGLYILLWGKNKE VQNYASKIAQEAKEIREQETQLQVITVSCDLSCPEAK" gene complement(28623746..28624990) /locus_tag="TCM_015581" /note="dbxref CacaoGD:Thecc1EG015581" mRNA complement(28623746..28624990) /locus_tag="TCM_015581" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15210.1" /inference="similar to AA sequence:ricco:30068.m002621" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc244t1" CDS complement(28624361..28624834) /locus_tag="TCM_015581" /note="dbxref ricco:30068.m002621" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23797.1" /db_xref="TAIR:AT1G63310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0P4" /translation="MPLETSKPDRQSTGEGDKNRYLDKELKDMVSAITHRISGIHKPG SSQHEDDQEHGASIITLAGNNSGATMRSELDDKSSPQGISLGEPDALSTYVNSNFQAV NNSIMLGSSYNTNDPGVHLDVSDVMEREGQKPADIARRIRGKKKEKGSLKSENSD" mobile_element complement(28625675..28626151) /note="source:CACAO_M_E4753_F17_scaffold_2 7349 7815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28625724..28626218) /note="source:scaffold_9_CACTA_0932 3099 3581" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28626010..28626251 /note="source:CACAO_Helitron_E81_scaffold_3 1186 1425" /mobile_element_type="transposon:Helitron" mobile_element 28626229..28626324 /note="source:scaffold_5_CACTA_0614 3376 3470" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28626574..28626618) /note="source:scaffold_1_CACTA_0008 6442 6487" /mobile_element_type="transposon:TIR/CACTA" gene 28627708..28630521 /locus_tag="TCM_015582" /note="dbxref CacaoGD:Thecc1EG015582" mRNA join(28627708..28627842,28628167..28628605, 28629156..28629290,28629373..28629415,28629879..28629935, 28630036..28630150,28630253..28630492) /locus_tag="TCM_015582" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010290" /inference="similar to AA sequence:Phytozome:POPTR_0011s15220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10061t00001; inference alignment:Newbler:10:TSA:cgbaB_g10061t00001" mRNA join(28628048..28628605,28629156..28629290, 28629373..28629415,28629879..28629935,28630036..28630150, 28630253..28630521) /locus_tag="TCM_015582" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010290" /inference="similar to AA sequence:Phytozome:POPTR_0011s15220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09345t00001; alternateUTRof:Thecc1EG015582t1; inference alignment:Newbler:10:TSA:cgbaB_g10061t00001" CDS join(28628283..28628605,28629156..28629290, 28629373..28629415,28629879..28629935,28630036..28630150, 28630253..28630383) /locus_tag="TCM_015582" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY23798.1" /db_xref="Phytozome:POPTR_0011s15220.1" /db_xref="TAIR:AT2G45530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PC07" /translation="MQNEGSNGTSTTAGDHSGNLPEPNLEKQENIPVLPQEDSHPGSV GDSGCVANPTLLTIVVSNGESHVTQQPIAKLSKDVDSIEEELPCVASPKKGYFSRTTS CHEQCRVCQQEKEEVLIDLGCQCKGGLAKAHRSCIDTWFHTKGSNKCEICQAVAVNVS APESQPSASSWLWRVDPSFAPQERERGCFSPLWVAFSILIGGLLLDVLISVTLGVSAL PVNIIIGVIVVLGLGTALRLALEFCHEWSIRRAVQRVETNATLGYHPAL" CDS join(28628283..28628605,28629156..28629290, 28629373..28629415,28629879..28629935,28630036..28630150, 28630253..28630383) /locus_tag="TCM_015582" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY23799.1" /db_xref="Phytozome:POPTR_0011s15220.1" /db_xref="TAIR:AT2G45530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PC07" /translation="MQNEGSNGTSTTAGDHSGNLPEPNLEKQENIPVLPQEDSHPGSV GDSGCVANPTLLTIVVSNGESHVTQQPIAKLSKDVDSIEEELPCVASPKKGYFSRTTS CHEQCRVCQQEKEEVLIDLGCQCKGGLAKAHRSCIDTWFHTKGSNKCEICQAVAVNVS APESQPSASSWLWRVDPSFAPQERERGCFSPLWVAFSILIGGLLLDVLISVTLGVSAL PVNIIIGVIVVLGLGTALRLALEFCHEWSIRRAVQRVETNATLGYHPAL" gene 28631075..28636557 /locus_tag="TCM_015584" /note="dbxref CacaoGD:Thecc1EG015584" mRNA join(28631075..28631332,28632325..28632460, 28632754..28633031,28633222..28633500,28633613..28634008, 28634200..28634751,28634917..28636557) /locus_tag="TCM_015584" /product="NAC domain-containing protein 78, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019702001" /inference="similar to AA sequence:Phytozome:POPTR_0011s15230.4" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc408t4; inference alignment:Newbler:10:TSA:cgbaB_g04363t00001" CDS join(28631294..28631332,28632325..28632460, 28632754..28633031,28633222..28633500,28633613..28634008, 28634200..28634751,28634917..28635213) /locus_tag="TCM_015584" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NAC domain-containing protein 78, putative isoform 2" /protein_id="EOY23801.1" /db_xref="Phytozome:POPTR_0011s15230.4" /db_xref="TAIR:AT1G33060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJI4" /translation="MITSCLPSDVSSPLGFRFRPTDEELINHYLKLKINGRHSEVEVI PEIDVCKWEPWDLPGLSVIKSDDPEWFFFCPRDRKYPNGHRSNRATDKGYWKATGKDR TIKSKKSLIGMKKTLVFYKGRAPKGQRTNWIMHEYRATAKDLDGTGPGQGAFVLCRLF HKLEERNDTVKYEEVEQTGYSPTMTKSSPDDTSSDLLQDTVSSDTQAQKPDNVMQNGQ VTGDSSCNSHMTSDAEDHATEETAVEKYPLLEGNSNLYEPNFGEIDYKVFSPMNLHFF EDLPVCMDSPYASDFGHDQNGFYFQDGTGEQDVSFSMLDEVLNNHEGSCAASNSQKNL VAGTEMPLSGNGFISKTIPPETSYIEESGIYSETDTEMAQLQSESEVGAPRWFGGHVD NKYSVQMQTSFDTGDTQRALYDQAFRIGNNGSLGNCSVGQATSYTDSAMGNINNLQQL TSLKNNMNNGGNLGGGTGMNTRTFEPPQQPNSDNFATLGIGTGIKIRTRAPQQRANSD NFVNQGTAPRRIRLQMKTSNGPMKVSAGCVDDGKMRSTGLGEEEEVQSALTEITEAEA AGQIPSSDESEKENQLLKFDGSGDIAEESCTKLRQRVKQDGEPCSSQIGPSVHSKVAP AHHRSRSLSIVVFTVFLITILLALFIGIWRCLRF" mRNA join(28631887..28632460,28632754..28633031, 28633222..28633500,28633613..28634008,28634200..28634751, 28634917..28636038) /locus_tag="TCM_015584" /product="NAC domain-containing protein 78, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019702001" /inference="similar to AA sequence:Phytozome:POPTR_0011s15230.4" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04363t00001" mRNA join(28631887..28632460,28632754..28632873, 28633222..28633500,28633613..28634008,28634200..28634751, 28634917..28636038) /locus_tag="TCM_015584" /product="NAC domain-containing protein 78, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019702001" /inference="similar to AA sequence:Phytozome:POPTR_0011s15230.4" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b015059t1a2; inference alignment:Newbler:10:TSA:cgbaB_g04363t00001" CDS join(28632295..28632460,28632754..28633031, 28633222..28633500,28633613..28634008,28634200..28634751, 28634917..28635213) /locus_tag="TCM_015584" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NAC domain-containing protein 78, putative isoform 1" /protein_id="EOY23800.1" /db_xref="Phytozome:POPTR_0011s15230.4" /db_xref="TAIR:AT1G33060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJI4" /translation="MAVLTMETLPLGFRFRPTDEELINHYLKLKINGRHSEVEVIPEI DVCKWEPWDLPGLSVIKSDDPEWFFFCPRDRKYPNGHRSNRATDKGYWKATGKDRTIK SKKSLIGMKKTLVFYKGRAPKGQRTNWIMHEYRATAKDLDGTGPGQGAFVLCRLFHKL EERNDTVKYEEVEQTGYSPTMTKSSPDDTSSDLLQDTVSSDTQAQKPDNVMQNGQVTG DSSCNSHMTSDAEDHATEETAVEKYPLLEGNSNLYEPNFGEIDYKVFSPMNLHFFEDL PVCMDSPYASDFGHDQNGFYFQDGTGEQDVSFSMLDEVLNNHEGSCAASNSQKNLVAG TEMPLSGNGFISKTIPPETSYIEESGIYSETDTEMAQLQSESEVGAPRWFGGHVDNKY SVQMQTSFDTGDTQRALYDQAFRIGNNGSLGNCSVGQATSYTDSAMGNINNLQQLTSL KNNMNNGGNLGGGTGMNTRTFEPPQQPNSDNFATLGIGTGIKIRTRAPQQRANSDNFV NQGTAPRRIRLQMKTSNGPMKVSAGCVDDGKMRSTGLGEEEEVQSALTEITEAEAAGQ IPSSDESEKENQLLKFDGSGDIAEESCTKLRQRVKQDGEPCSSQIGPSVHSKVAPAHH RSRSLSIVVFTVFLITILLALFIGIWRCLRF" mRNA join(28632321..28632460,28633222..28633500, 28633613..28634008,28634200..28634751,28634917..28636277) /locus_tag="TCM_015584" /product="NAC domain-containing protein 78, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019702001" /inference="similar to AA sequence:Phytozome:POPTR_0011s15230.4" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc423t10_C2; inference alignment:Newbler:10:TSA:cgbaB_g04363t00001" CDS join(28632428..28632460,28633222..28633500, 28633613..28634008,28634200..28634751,28634917..28635213) /locus_tag="TCM_015584" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="NAC domain-containing protein 78, putative isoform 4" /protein_id="EOY23803.1" /db_xref="Phytozome:POPTR_0011s15230.4" /db_xref="TAIR:AT1G33060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TVV2" /translation="MSANGSPGICLGAFVLCRLFHKLEERNDTVKYEEVEQTGYSPTM TKSSPDDTSSDLLQDTVSSDTQAQKPDNVMQNGQVTGDSSCNSHMTSDAEDHATEETA VEKYPLLEGNSNLYEPNFGEIDYKVFSPMNLHFFEDLPVCMDSPYASDFGHDQNGFYF QDGTGEQDVSFSMLDEVLNNHEGSCAASNSQKNLVAGTEMPLSGNGFISKTIPPETSY IEESGIYSETDTEMAQLQSESEVGAPRWFGGHVDNKYSVQMQTSFDTGDTQRALYDQA FRIGNNGSLGNCSVGQATSYTDSAMGNINNLQQLTSLKNNMNNGGNLGGGTGMNTRTF EPPQQPNSDNFATLGIGTGIKIRTRAPQQRANSDNFVNQGTAPRRIRLQMKTSNGPMK VSAGCVDDGKMRSTGLGEEEEVQSALTEITEAEAAGQIPSSDESEKENQLLKFDGSGD IAEESCTKLRQRVKQDGEPCSSQIGPSVHSKVAPAHHRSRSLSIVVFTVFLITILLAL FIGIWRCLRF" CDS join(28633318..28633500,28633613..28634008, 28634200..28634751,28634917..28635213) /locus_tag="TCM_015584" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="NAC domain-containing protein 78, putative isoform 3" /protein_id="EOY23802.1" /db_xref="Phytozome:POPTR_0011s15230.4" /db_xref="TAIR:AT1G33060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYY3" /translation="MTKSSPDDTSSDLLQDTVSSDTQAQKPDNVMQNGQVTGDSSCNS HMTSDAEDHATEETAVEKYPLLEGNSNLYEPNFGEIDYKVFSPMNLHFFEDLPVCMDS PYASDFGHDQNGFYFQDGTGEQDVSFSMLDEVLNNHEGSCAASNSQKNLVAGTEMPLS GNGFISKTIPPETSYIEESGIYSETDTEMAQLQSESEVGAPRWFGGHVDNKYSVQMQT SFDTGDTQRALYDQAFRIGNNGSLGNCSVGQATSYTDSAMGNINNLQQLTSLKNNMNN GGNLGGGTGMNTRTFEPPQQPNSDNFATLGIGTGIKIRTRAPQQRANSDNFVNQGTAP RRIRLQMKTSNGPMKVSAGCVDDGKMRSTGLGEEEEVQSALTEITEAEAAGQIPSSDE SEKENQLLKFDGSGDIAEESCTKLRQRVKQDGEPCSSQIGPSVHSKVAPAHHRSRSLS IVVFTVFLITILLALFIGIWRCLRF" gene 28636091..28636814 /locus_tag="TCM_015585" /note="dbxref CacaoGD:Thecc1EG015585" mRNA 28636091..28636814 /locus_tag="TCM_015585" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage" CDS 28636151..28636366 /locus_tag="TCM_015585" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23804.1" /translation="MSLTASKGEHCRLIHAYWSCGGLHMEIRNDHPDFHVKLRRFEAP HVDPFVDSVASLDECHLYHRNGGLSLP" gene 28637695..28638168 /locus_tag="TCM_015586" /note="dbxref CacaoGD:Thecc1EG015586" mRNA 28637695..28638168 /locus_tag="TCM_015586" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s45680.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04800t00001" CDS 28637872..28638045 /locus_tag="TCM_015586" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23805.1" /translation="MILVAIVAELMEEYMVLLARVLEHLLHEAPFPRRIRFLILRSLP FVSSTPPLLRAPA" mobile_element complement(28638921..28639461) /note="source:CACAO_Again_on_S_E61_scaffold_2 1 542" /mobile_element_type="transposon:TIR/hAT" mobile_element 28639635..28639717 /note="source:CACAO_M_E34420_F305_scaffold_5 1455 1533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28639765..28640154) /note="source:INTACT687_F13_scaffold_3-int 1298 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28640155..28640582) /note="source:scaffold_1_CACTA_0008 931 1353" /mobile_element_type="transposon:TIR/CACTA" gene 28643547..28645645 /locus_tag="TCM_015587" /note="dbxref CacaoGD:Thecc1EG015587" mRNA join(28643547..28643883,28644838..28644913, 28645142..28645645) /locus_tag="TCM_015587" /product="Heavy metal transport/detoxification superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30068.m002617" /inference="similar to AA sequence:ricco:30068.m002617" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15105t00001" CDS join(28643743..28643883,28644838..28644913, 28645142..28645464) /locus_tag="TCM_015587" /note="dbxref ricco:30068.m002617" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein" /protein_id="EOY23806.1" /db_xref="TAIR:AT2G18196.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JMB8" /translation="MATLLARAFGSIISVIASCFFGYRDNKKGFSNINYYNMPKGRPL SLQTVDLKVRMCCTGCERVVKNAIYKLRGIDSVEVDLEMEKVTVIGYVDRNKVLKQVR RAGKRAEFWPYPDPPLYFTSTNEYFKDTTNEFKESYNYYRHGYNLGHRHGNIPVTHRG DDKVSNMFNDDNVNACCLM" mobile_element 28646696..28646831 /note="source:scaffold_7_CACTA_0795 2890 3029" /mobile_element_type="transposon:TIR/CACTA" gene 28647034..28652467 /locus_tag="TCM_015588" /note="dbxref CacaoGD:Thecc1EG015588" mRNA join(28647034..28647216,28647452..28647998, 28648553..28650270,28650754..28650894,28650984..28651973) /locus_tag="TCM_015588" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s45660.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s45660.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8503t3" mRNA join(28647142..28647216,28647452..28647998, 28648553..28650270,28650754..28650894,28650984..28651157, 28651376..28652217) /locus_tag="TCM_015588" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s45660.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s45660.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8503t2; alternateUTRof:Thecc1EG015588t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8503t3" mRNA join(28647142..28647216,28647452..28647998, 28648553..28650270,28650754..28650894,28650984..28651157, 28651449..28652217) /locus_tag="TCM_015588" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s45660.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s45660.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8503t3; alternateUTRof:Thecc1EG015588t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8503t3" mRNA join(28647142..28647216,28647452..28647998, 28648553..28650270,28650793..28650894,28650984..28651157, 28651376..28652217) /locus_tag="TCM_015588" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s45660.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s45660.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8503t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8503t3" mRNA join(28647188..28647216,28647452..28647998, 28648553..28650270,28650754..28650894,28650984..28651157, 28651330..28651476) /locus_tag="TCM_015588" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s45660.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s45660.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1051t1; alternateUTRof:Thecc1EG015588t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8503t3" mRNA join(28647192..28647216,28647452..28647998, 28648553..28650270,28650793..28650894,28650984..28651157, 28651449..28652467) /locus_tag="TCM_015588" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s45660.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s45660.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1052t2; alternateUTRof:Thecc1EG015588t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8503t3" CDS join(28647482..28647998,28648553..28650270, 28650754..28650894,28650984..28651154) /locus_tag="TCM_015588" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23807.1" /db_xref="Phytozome:POPTR_0001s45660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJ67" /translation="MMSESPKAINVFSTPTSSSRLSPLARPFTVNNPFNRHESFDPLL DSSSSPCNHDQPFPCLSLGNQGHRGCYAYHSDATSITAFPCVDGPDFEFDSRFAYYQL EEPPLHTHFTLSTHQSSQTNFIPSSSSFGNVGNKGGLQGTAVHQQGTEILRCNRQVAS AGSLSSNNPLEQGTTLEGSKLVSETSFVLRGKGSVVIGKDNQIRPEDKEKIHTESSIF PLANSEVNLLMKCVTKPFSISSDLPFPPRPQDTQSQLLYSAESIACSLFGSTIFPYES CFPHLGSCHAETLVSHAPECFSYSAQICKPSSAGSNPPIVNPVPLVNVASGGSDAVSS RDSYFDYVLPGMMDTSTVHNPVDKVACHDQVIIEKGEKGKIVEPFHDETNNPSIRAKS KLRIACPNVPQDLTLEQHGAKPGIPDDKSSTSHGDSDVDSPCWKGTQANKSPLSDSVP ANSEDSKGQSPFRVSMPLKSEHSKNEKVARSSLNPQAPVFIPGNSKPKVDHHQKEGHG DSSLSSQKSAALDVTSSSSEHRSTDSVNAVKCPSERIDDIGIQSSSDVHDSKKECGIP YKSFRSSAVNSSCSFQPYLREEYVTSASQLVRGTNVAGSMEGIADAAHNGLDSVEDIA HHGPSTSFSFLETETALNSHSTGVGVFSDFTERPQEPSKSTPPKIDVKLMINTMQYLS ELLLQNSSFDLGSLSEHEYDKLLTIMNNLYVLIRNKAGLMAVRLESSHPCTLYCRRQP ADRHEVKKVKDKAVLHDQEMYKTSAPMLSGRMLYSFYQSNDEGFEKGGDISQVIEKDP KVIPSIEKEMPSEALFYRDLWLEAKAALNLKKYQAHALQMQSEPDRYRSK" CDS join(28647482..28647998,28648553..28650270, 28650754..28650894,28650984..28651154) /locus_tag="TCM_015588" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23808.1" /db_xref="Phytozome:POPTR_0001s45660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJ67" /translation="MMSESPKAINVFSTPTSSSRLSPLARPFTVNNPFNRHESFDPLL DSSSSPCNHDQPFPCLSLGNQGHRGCYAYHSDATSITAFPCVDGPDFEFDSRFAYYQL EEPPLHTHFTLSTHQSSQTNFIPSSSSFGNVGNKGGLQGTAVHQQGTEILRCNRQVAS AGSLSSNNPLEQGTTLEGSKLVSETSFVLRGKGSVVIGKDNQIRPEDKEKIHTESSIF PLANSEVNLLMKCVTKPFSISSDLPFPPRPQDTQSQLLYSAESIACSLFGSTIFPYES CFPHLGSCHAETLVSHAPECFSYSAQICKPSSAGSNPPIVNPVPLVNVASGGSDAVSS RDSYFDYVLPGMMDTSTVHNPVDKVACHDQVIIEKGEKGKIVEPFHDETNNPSIRAKS KLRIACPNVPQDLTLEQHGAKPGIPDDKSSTSHGDSDVDSPCWKGTQANKSPLSDSVP ANSEDSKGQSPFRVSMPLKSEHSKNEKVARSSLNPQAPVFIPGNSKPKVDHHQKEGHG DSSLSSQKSAALDVTSSSSEHRSTDSVNAVKCPSERIDDIGIQSSSDVHDSKKECGIP YKSFRSSAVNSSCSFQPYLREEYVTSASQLVRGTNVAGSMEGIADAAHNGLDSVEDIA HHGPSTSFSFLETETALNSHSTGVGVFSDFTERPQEPSKSTPPKIDVKLMINTMQYLS ELLLQNSSFDLGSLSEHEYDKLLTIMNNLYVLIRNKAGLMAVRLESSHPCTLYCRRQP ADRHEVKKVKDKAVLHDQEMYKTSAPMLSGRMLYSFYQSNDEGFEKGGDISQVIEKDP KVIPSIEKEMPSEALFYRDLWLEAKAALNLKKYQAHALQMQSEPDRYRSK" CDS join(28647482..28647998,28648553..28650270, 28650754..28650894,28650984..28651154) /locus_tag="TCM_015588" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23809.1" /db_xref="Phytozome:POPTR_0001s45660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJ67" /translation="MMSESPKAINVFSTPTSSSRLSPLARPFTVNNPFNRHESFDPLL DSSSSPCNHDQPFPCLSLGNQGHRGCYAYHSDATSITAFPCVDGPDFEFDSRFAYYQL EEPPLHTHFTLSTHQSSQTNFIPSSSSFGNVGNKGGLQGTAVHQQGTEILRCNRQVAS AGSLSSNNPLEQGTTLEGSKLVSETSFVLRGKGSVVIGKDNQIRPEDKEKIHTESSIF PLANSEVNLLMKCVTKPFSISSDLPFPPRPQDTQSQLLYSAESIACSLFGSTIFPYES CFPHLGSCHAETLVSHAPECFSYSAQICKPSSAGSNPPIVNPVPLVNVASGGSDAVSS RDSYFDYVLPGMMDTSTVHNPVDKVACHDQVIIEKGEKGKIVEPFHDETNNPSIRAKS KLRIACPNVPQDLTLEQHGAKPGIPDDKSSTSHGDSDVDSPCWKGTQANKSPLSDSVP ANSEDSKGQSPFRVSMPLKSEHSKNEKVARSSLNPQAPVFIPGNSKPKVDHHQKEGHG DSSLSSQKSAALDVTSSSSEHRSTDSVNAVKCPSERIDDIGIQSSSDVHDSKKECGIP YKSFRSSAVNSSCSFQPYLREEYVTSASQLVRGTNVAGSMEGIADAAHNGLDSVEDIA HHGPSTSFSFLETETALNSHSTGVGVFSDFTERPQEPSKSTPPKIDVKLMINTMQYLS ELLLQNSSFDLGSLSEHEYDKLLTIMNNLYVLIRNKAGLMAVRLESSHPCTLYCRRQP ADRHEVKKVKDKAVLHDQEMYKTSAPMLSGRMLYSFYQSNDEGFEKGGDISQVIEKDP KVIPSIEKEMPSEALFYRDLWLEAKAALNLKKYQAHALQMQSEPDRYRSK" CDS join(28647482..28647998,28648553..28650270, 28650754..28650894,28650984..28651154) /locus_tag="TCM_015588" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23810.1" /db_xref="Phytozome:POPTR_0001s45660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJ67" /translation="MMSESPKAINVFSTPTSSSRLSPLARPFTVNNPFNRHESFDPLL DSSSSPCNHDQPFPCLSLGNQGHRGCYAYHSDATSITAFPCVDGPDFEFDSRFAYYQL EEPPLHTHFTLSTHQSSQTNFIPSSSSFGNVGNKGGLQGTAVHQQGTEILRCNRQVAS AGSLSSNNPLEQGTTLEGSKLVSETSFVLRGKGSVVIGKDNQIRPEDKEKIHTESSIF PLANSEVNLLMKCVTKPFSISSDLPFPPRPQDTQSQLLYSAESIACSLFGSTIFPYES CFPHLGSCHAETLVSHAPECFSYSAQICKPSSAGSNPPIVNPVPLVNVASGGSDAVSS RDSYFDYVLPGMMDTSTVHNPVDKVACHDQVIIEKGEKGKIVEPFHDETNNPSIRAKS KLRIACPNVPQDLTLEQHGAKPGIPDDKSSTSHGDSDVDSPCWKGTQANKSPLSDSVP ANSEDSKGQSPFRVSMPLKSEHSKNEKVARSSLNPQAPVFIPGNSKPKVDHHQKEGHG DSSLSSQKSAALDVTSSSSEHRSTDSVNAVKCPSERIDDIGIQSSSDVHDSKKECGIP YKSFRSSAVNSSCSFQPYLREEYVTSASQLVRGTNVAGSMEGIADAAHNGLDSVEDIA HHGPSTSFSFLETETALNSHSTGVGVFSDFTERPQEPSKSTPPKIDVKLMINTMQYLS ELLLQNSSFDLGSLSEHEYDKLLTIMNNLYVLIRNKAGLMAVRLESSHPCTLYCRRQP ADRHEVKKVKDKAVLHDQEMYKTSAPMLSGRMLYSFYQSNDEGFEKGGDISQVIEKDP KVIPSIEKEMPSEALFYRDLWLEAKAALNLKKYQAHALQMQSEPDRYRSK" CDS join(28647482..28647998,28648553..28650270, 28650793..28650894,28650984..28651154) /locus_tag="TCM_015588" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY23811.1" /db_xref="Phytozome:POPTR_0001s45660.1" /translation="MMSESPKAINVFSTPTSSSRLSPLARPFTVNNPFNRHESFDPLL DSSSSPCNHDQPFPCLSLGNQGHRGCYAYHSDATSITAFPCVDGPDFEFDSRFAYYQL EEPPLHTHFTLSTHQSSQTNFIPSSSSFGNVGNKGGLQGTAVHQQGTEILRCNRQVAS AGSLSSNNPLEQGTTLEGSKLVSETSFVLRGKGSVVIGKDNQIRPEDKEKIHTESSIF PLANSEVNLLMKCVTKPFSISSDLPFPPRPQDTQSQLLYSAESIACSLFGSTIFPYES CFPHLGSCHAETLVSHAPECFSYSAQICKPSSAGSNPPIVNPVPLVNVASGGSDAVSS RDSYFDYVLPGMMDTSTVHNPVDKVACHDQVIIEKGEKGKIVEPFHDETNNPSIRAKS KLRIACPNVPQDLTLEQHGAKPGIPDDKSSTSHGDSDVDSPCWKGTQANKSPLSDSVP ANSEDSKGQSPFRVSMPLKSEHSKNEKVARSSLNPQAPVFIPGNSKPKVDHHQKEGHG DSSLSSQKSAALDVTSSSSEHRSTDSVNAVKCPSERIDDIGIQSSSDVHDSKKECGIP YKSFRSSAVNSSCSFQPYLREEYVTSASQLVRGTNVAGSMEGIADAAHNGLDSVEDIA HHGPSTSFSFLETETALNSHSTGVGVFSDFTERPQEPSKSTPPKIDVKLMINTMQYLS ELLLQNSSFDLGSLSEHEYDKLLTIMNNLYVLIRNKAGLMAVRLESSHPCTLYCRRQP ADRHEEMYKTSAPMLSGRMLYSFYQSNDEGFEKGGDISQVIEKDPKVIPSIEKEMPSE ALFYRDLWLEAKAALNLKKYQAHALQMQSEPDRYRSK" CDS join(28647482..28647998,28648553..28650270, 28650793..28650894,28650984..28651154) /locus_tag="TCM_015588" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY23812.1" /db_xref="Phytozome:POPTR_0001s45660.1" /translation="MMSESPKAINVFSTPTSSSRLSPLARPFTVNNPFNRHESFDPLL DSSSSPCNHDQPFPCLSLGNQGHRGCYAYHSDATSITAFPCVDGPDFEFDSRFAYYQL EEPPLHTHFTLSTHQSSQTNFIPSSSSFGNVGNKGGLQGTAVHQQGTEILRCNRQVAS AGSLSSNNPLEQGTTLEGSKLVSETSFVLRGKGSVVIGKDNQIRPEDKEKIHTESSIF PLANSEVNLLMKCVTKPFSISSDLPFPPRPQDTQSQLLYSAESIACSLFGSTIFPYES CFPHLGSCHAETLVSHAPECFSYSAQICKPSSAGSNPPIVNPVPLVNVASGGSDAVSS RDSYFDYVLPGMMDTSTVHNPVDKVACHDQVIIEKGEKGKIVEPFHDETNNPSIRAKS KLRIACPNVPQDLTLEQHGAKPGIPDDKSSTSHGDSDVDSPCWKGTQANKSPLSDSVP ANSEDSKGQSPFRVSMPLKSEHSKNEKVARSSLNPQAPVFIPGNSKPKVDHHQKEGHG DSSLSSQKSAALDVTSSSSEHRSTDSVNAVKCPSERIDDIGIQSSSDVHDSKKECGIP YKSFRSSAVNSSCSFQPYLREEYVTSASQLVRGTNVAGSMEGIADAAHNGLDSVEDIA HHGPSTSFSFLETETALNSHSTGVGVFSDFTERPQEPSKSTPPKIDVKLMINTMQYLS ELLLQNSSFDLGSLSEHEYDKLLTIMNNLYVLIRNKAGLMAVRLESSHPCTLYCRRQP ADRHEEMYKTSAPMLSGRMLYSFYQSNDEGFEKGGDISQVIEKDPKVIPSIEKEMPSE ALFYRDLWLEAKAALNLKKYQAHALQMQSEPDRYRSK" gene 28653238..28654134 /locus_tag="TCM_015589" /note="dbxref CacaoGD:Thecc1EG015589" mRNA 28653238..28654134 /locus_tag="TCM_015589" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.68 coverage" CDS 28653823..28654119 /locus_tag="TCM_015589" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23813.1" /translation="MSCYCHLPLHFTIIAVVLWDRLPPFALSLLMLCHDKQYYLRMLV YEMEEEAALLSVASLVAPTIRHQLYFVIFFLLFLIFSSTFVAASTSFLLYTFYY" gene complement(28660780..28663169) /locus_tag="TCM_015590" /note="dbxref CacaoGD:Thecc1EG015590" mRNA complement(join(28660780..28662569,28662829..28663169)) /locus_tag="TCM_015590" /product="AP2/B3-like transcriptional factor family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400021619" /inference="similar to AA sequence:ricco:30068.m002615" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc17t5" CDS complement(join(28661251..28662569,28662829..28662916)) /locus_tag="TCM_015590" /note="dbxref ricco:30068.m002615" /codon_start=1 /product="AP2/B3-like transcriptional factor family protein, putative" /protein_id="EOY23814.1" /db_xref="TAIR:AT2G46870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYX9" /translation="MGVYCPSLVFVFGSFWSKEESTDFLIVLRDPRGKVTIGAKKFMD FGSSGREGFSEEEQMGKGKLPISYSSSSSPSSSSSQHKTQLVPPLSNCRWEKQPHPIY DSHHQMSPNWLGNRYEPEEDNEATATATASEADSKRVDSDSTLELKSSASANIEKEHM FDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNEKGLLLNFEDRNGKPWRFRYSYWN SSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGVGEFGKDRLFIDWRRRPDAPDPASFHP HQHHFSFHRSIPWSPLLMRPPPTGRDHFHLSQIHPLNRNSYYGGYPTGSNVMNPAGGT MEPVFYWRSAVAAAAPQMGMGMGLGMMEWQQQTGGVVEPIVFDSVPVVQGKAAAKRLR LFGVNMECPTSASSDECEMLSPTTIANATMASQPPQLSSSSQHPLQLRLYNGTPLPPT DFLNANKGKASMSLDLDM" mobile_element complement(28664944..28664995) /note="source:CACAO_Mutator_E1149_scaffold_5 4716 4767" /mobile_element_type="transposon:TIR/Mutator" mobile_element 28664951..28665015 /note="source:CACAO_PIF_E144_scaffold_10 5995 6059" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28664952..28665023 /note="source:scaffold_8_CACTA_0853 3738 3810" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28664977..28665054) /note="source:INTACT146F_F14_scaffold_2-int 13422 13498" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28669005..28670188 /locus_tag="TCM_015591" /note="dbxref CacaoGD:Thecc1EG015591" mRNA 28669005..28670188 /locus_tag="TCM_015591" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.98 coverage" CDS 28669529..28669858 /locus_tag="TCM_015591" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23815.1" /translation="MIILTLKAFSQILDMTRPQEMHYFLRAIQSLVFYFLYLSLNESH NLFRQNFYSAENWFLNHDAMLISTSRDRGVKRMPHQTVVYISNNLQQPAQALLVCIQQ AFIIGLS" gene 28670983..28672537 /locus_tag="TCM_015592" /note="dbxref CacaoGD:Thecc1EG015592" mRNA join(28670983..28671166,28672071..28672537) /locus_tag="TCM_015592" /product="Translocase of the inner mitochondrial membrane 13" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s45640.1" /inference="similar to AA sequence:ricco:30068.m002614" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06037t00001" CDS join(28671050..28671166,28672071..28672220) /locus_tag="TCM_015592" /note="dbxref ricco:30068.m002614" /codon_start=1 /product="Translocase of the inner mitochondrial membrane 13" /protein_id="EOY23816.1" /translation="MDSFSTGSSGTGSPQISTEEFMDQMKLQLAQAYAQEFLETVREK CFDKCITKPGSSLSGSESSCISRCVDRYIEATGIISKALFNAPR" gene complement(28672428..28674062) /locus_tag="TCM_015593" /note="dbxref CacaoGD:Thecc1EG015593" mRNA complement(28672428..28674062) /locus_tag="TCM_015593" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30068.m002613" /inference="similar to AA sequence:ricco:30068.m002613" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15323t00001" CDS complement(28672534..28673625) /locus_tag="TCM_015593" /note="dbxref ricco:30068.m002613" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY23817.1" /db_xref="TAIR:AT3G44326.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJ61" /translation="MELLQCHLKCLSRDLLTDIMVRLDGSTLASAACTCSDLQGIARE QSLWKQLCHSTWPSTALKEAQHLISSSAIDGFDRFYADSYPLILHDKVAKNIPAQTHI SPSNFASFVDVYYSDQCILSRVLDGIPSSGDFCEGDETSDLMRWLLNCPFKLVLLDVG HDEGTGDGNELHRANNQYGYHRILAPPFMSFVQTDHCKELREGLRLSWVLLDKMRGRA VNLSSWKPLLVKKIWATDGDYEIHFGCIVPVEESVLPHKLAKCLILARCNLAENGHLG WKEISMHFEDTRGAYVCGNKSLTIMNQALYCLRSNSRLIVEKGYQQFEELKQEMIRKK KLKETIADWLCLSFEVAIFITFGYYILPI" mobile_element 28674285..28674369 /note="source:scaffold_1_CACTA_0005 6268 6354" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28675374..28675457) /note="source:scaffold_5_CACTA_0614 3386 3470" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28675448..28675618) /note="source:CACAO_Helitron_E81_scaffold_3 1274 1425" /mobile_element_type="transposon:Helitron" mobile_element complement(28676316..28676589) /note="source:scaffold_9_CACTA_0936 458 681" /mobile_element_type="transposon:TIR/CACTA" gene 28676702..28679782 /locus_tag="TCM_015594" /note="dbxref CacaoGD:Thecc1EG015594" mRNA join(28676702..28677071,28677177..28678366, 28678617..28679120,28679208..28679782) /locus_tag="TCM_015594" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene33596.2" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8501t1" CDS join(28677374..28678366,28678617..28679120, 28679208..28679660) /locus_tag="TCM_015594" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23818.1" /translation="MPLEFYDQVVLTSIGNAIGRMEKIDRTKADIFRGKFARLCVEVD LRKPLVPKVFISGLWQKVEDEGIRMVFFQCGRFGHNIEVCTAKNLDQATKNKDKDLNR EEQDNNWNKKYENQKFGPWMIARKNYRKPLSSRVRIVEKETTTQKTSNIGSRFTVLEE DPSYVDNKVVVPESLEHNTSGNNVANKKQQMVGGKNKEELKKSLQSVVNRNLASSSTK GKGKVAGAVRVVYSDQLSKQNDGTGIGQTVEKRNLAIKNHTVGLEDKSEMNNQPPQDD LLNGNTICNQEASKDQAGVGVSGVAKEKETNSMEEGSSSKMDIVLANADSDKGAKAEG FSEGIWVIWELAAVEIDILAYSSQLVRMTVRSDNDEWLLTAVYGSPNAEERKWLWHSL KLSSEIHDLAWMIIGDFNQVLLLDEKTGKNGVNVAHCKQMIDCLCSCNLADLGASGAK YTWSRKCDGFNFTRERLDKAVANDRWSTMFPKAKVFNLPKTHSDHHPVLQFLQAHWDY DGVINSTKLGKLAEALNKWKFETFGDLVKKKKCLLARLKGIQIRLAQGPNDYLQHLEV ALVEEFNLILYQEEVMWQQKAKLDWLKYGDCNSKYYHAIVKRRQHKKQISTFKRDDNS WCLDKGELTKMVVEFYSNLYSDDGT" gene 28683594..28685977 /locus_tag="TCM_015595" /note="dbxref CacaoGD:Thecc1EG015595" mRNA join(28683594..28684201,28684294..28684541, 28684669..28684990,28685641..28685938) /locus_tag="TCM_015595" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene01857" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005023t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019695001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9570t1" mRNA join(28683943..28684201,28684294..28684541, 28684669..28684990,28685641..28685977) /locus_tag="TCM_015595" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene01857" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005023t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019695001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06484t00001; alternateUTRof:Thecc1EG015595t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9570t1" CDS join(28683983..28684201,28684294..28684541, 28684669..28684990,28685641..28685892) /locus_tag="TCM_015595" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005023t1" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein isoform 1" /protein_id="EOY23819.1" /db_xref="Phytozome:GSVIVT01019695001" /db_xref="TAIR:AT4G10490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSA8" /translation="MAATKLLLTDLASSVKQVPFNYIRPISDRPNLSDVQVSDVSLPL IDLQDLYGPNRSDILKQIALACEHDGFFQVKNHGISEALINNMLRLAREFFRLPKSER LKNYSDDPSKANRLSTSFNVKTEKVANWRDFLRLHCYPLKDHVHEWPSNPPSFREDAA EYCTRVRGLVLRLLEAISESLGLKRDHIDKTLSKHGQHMALNYYPPCPEPELTYGLPG HTDPNLITILLQDDVPGLQVLRNGKWVAVNPIPNTFIVNIGDQMQVISNDRYKSVLHR AVVNCNKERISIPTFYCPSNDALIGPATELIDDEHPAVYRSFAYGEFYEKFWKRGLAT ECCLDKFKTSIT" CDS join(28683983..28684201,28684294..28684541, 28684669..28684990,28685641..28685892) /locus_tag="TCM_015595" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005023t1" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein isoform 1" /protein_id="EOY23820.1" /db_xref="Phytozome:GSVIVT01019695001" /db_xref="TAIR:AT4G10490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSA8" /translation="MAATKLLLTDLASSVKQVPFNYIRPISDRPNLSDVQVSDVSLPL IDLQDLYGPNRSDILKQIALACEHDGFFQVKNHGISEALINNMLRLAREFFRLPKSER LKNYSDDPSKANRLSTSFNVKTEKVANWRDFLRLHCYPLKDHVHEWPSNPPSFREDAA EYCTRVRGLVLRLLEAISESLGLKRDHIDKTLSKHGQHMALNYYPPCPEPELTYGLPG HTDPNLITILLQDDVPGLQVLRNGKWVAVNPIPNTFIVNIGDQMQVISNDRYKSVLHR AVVNCNKERISIPTFYCPSNDALIGPATELIDDEHPAVYRSFAYGEFYEKFWKRGLAT ECCLDKFKTSIT" mRNA join(<28683992..28684201,28684294..28684541, 28684669..28685319) /locus_tag="TCM_015595" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene01857" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005023t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019695001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00871t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9570t1" CDS join(<28683992..28684201,28684294..28684541, 28684669..28685116) /locus_tag="TCM_015595" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005023t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 3" /protein_id="EOY23821.1" /db_xref="Phytozome:GSVIVT01019695001" /db_xref="TAIR:AT4G10490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSA8" /translation="TKLLLTDLASSVKQVPFNYIRPISDRPNLSDVQVSDVSLPLIDL QDLYGPNRSDILKQIALACEHDGFFQVKNHGISEALINNMLRLAREFFRLPKSERLKN YSDDPSKANRLSTSFNVKTEKVANWRDFLRLHCYPLKDHVHEWPSNPPSFREDAAEYC TRVRGLVLRLLEAISESLGLKRDHIDKTLSKHGQHMALNYYPPCPEPELTYGLPGHTD PNLITILLQDDVPGLQVLRNGKWVAVNPIPNTFIVNIGDQMQVNFTCVVCPKNFRPNL DRKLEEMDLPAQHVRHCQLASSTPD" gene 28686258..28688253 /locus_tag="TCM_015596" /note="dbxref CacaoGD:Thecc1EG015596" mRNA join(28686258..28686744,28686849..28687159, 28687535..28687599,28687723..28688253) /locus_tag="TCM_015596" /product="Caffeic acid 3-O-methyltransferase 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019691001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015522t1" /inference="similar to AA sequence:frave:gene01858" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8581t2" CDS join(28686320..28686744,28686849..28687159, 28687535..28687599,28687723..28688025) /locus_tag="TCM_015596" /note="dbxref frave:gene01858; paralog of Thecc1EG015522t1" /codon_start=1 /product="Caffeic acid 3-O-methyltransferase 1" /protein_id="EOY23822.1" /db_xref="TAIR:AT1G33030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q00763" /translation="MNSKESQARISTDEEDKRAQQYAMQLVSASVMPMVLKAAIQLGV FEIIQRSGPGALLSLSQIASQLPTQNNPDAPLILDRILRLLASYSILTFSLVADHQDG QVVRLYGLAPVAKYFIRSQGGGSLSSMLDLFQDRTSIDIWYHLKDAVVEGGCPFNREH GMSSIEYMGKDARFGEIFKGSMIDFNGMFVEEMLKTYKGFEGLNSLVDVGGGNGSILH RIVSKYPAIKAINFDLPQIIENSPSYPGIEHVAGDMFESVPKGDAIFMKWVIHCLDDK KCLELLKNCYEALPAKGRVIIVDLVIPESPDSSRVVKSVYQFELFMMNFTGTLKERTE KEFESLAKGAGFSRVQVACCACSFSVVELYKNT" gene complement(28687671..28691389) /locus_tag="TCM_015597" /note="dbxref CacaoGD:Thecc1EG015597" mRNA complement(join(28687671..28689812,28690889..28690941, 28691120..28691389)) /locus_tag="TCM_015597" /product="Zinc transporter of isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019690001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005030t3" /inference="similar to AA sequence:Phytozome:POPTR_0001s45520.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:PASA:2:TSA:puevd3b015072t1a2; alternateUTRof:Thecc1EG015597t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9550t2" mRNA complement(join(28688211..28689812,28690889..28690949, 28691120..28691256)) /locus_tag="TCM_015597" /product="Zinc transporter of isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019690001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005030t3" /inference="similar to AA sequence:Phytozome:POPTR_0001s45520.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9550t2" CDS complement(28688562..28689812) /locus_tag="TCM_015597" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005030t3" /codon_start=1 /product="Zinc transporter of isoform 1" /protein_id="EOY23823.1" /db_xref="Phytozome:POPTR_0001s45520.1" /db_xref="TAIR:AT3G58810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LXS1" /translation="MEVQNSEQCNIIEIRGDVPAAETSLGGSTICGGAACGFSDAQTS SKDTKERAASMRKLLMAVVLCIVFMSVEVAGGIKANSLAILTDAAHLLSDVAAFAISL FSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIARLIHDNGEVQGF LMFVVSAFGLVVNIAMALLLGHDHGHHHHHGHNHNHGHGGNDHNHHDHSHSHDNETHN HGLSITSHHHHHGSNSKHDEHHHTHEADHTVPLIKNYSDCEKILESGAPRKKERNINV QGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDLICTLVFSIIVLGTTIRMLRNILE VLMESTPREIDATRLEKGLCEMDEVVAIHELHIWAITVGKVLLACHVLIKHEANADMV LNKVIDYIRREYNISHVTIQIERQ" CDS complement(28688562..28689812) /locus_tag="TCM_015597" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005030t3" /codon_start=1 /product="Zinc transporter of isoform 1" /protein_id="EOY23824.1" /db_xref="Phytozome:POPTR_0001s45520.1" /db_xref="TAIR:AT3G58810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LXS1" /translation="MEVQNSEQCNIIEIRGDVPAAETSLGGSTICGGAACGFSDAQTS SKDTKERAASMRKLLMAVVLCIVFMSVEVAGGIKANSLAILTDAAHLLSDVAAFAISL FSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIARLIHDNGEVQGF LMFVVSAFGLVVNIAMALLLGHDHGHHHHHGHNHNHGHGGNDHNHHDHSHSHDNETHN HGLSITSHHHHHGSNSKHDEHHHTHEADHTVPLIKNYSDCEKILESGAPRKKERNINV QGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDLICTLVFSIIVLGTTIRMLRNILE VLMESTPREIDATRLEKGLCEMDEVVAIHELHIWAITVGKVLLACHVLIKHEANADMV LNKVIDYIRREYNISHVTIQIERQ" gene complement(28692280..28695886) /locus_tag="TCM_015598" /note="dbxref CacaoGD:Thecc1EG015598" mRNA complement(join(28692280..28692910,28695003..28695066, 28695147..28695319,28695414..28695886)) /locus_tag="TCM_015598" /product="Plastid ribosomal protein l11" /inference="alignment:exonerate-protein:2:frave:gene01860" /inference="similar to AA sequence:Phytozome:POPTR_0001s45510.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9546t1" CDS complement(join(28692702..28692910,28695003..28695066, 28695147..28695319,28695414..28695648)) /locus_tag="TCM_015598" /codon_start=1 /product="Plastid ribosomal protein l11" /protein_id="EOY23825.1" /db_xref="Phytozome:POPTR_0001s45510.1" /db_xref="TAIR:AT1G32990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MAP3" /translation="MASSLSTLHHLSSSLCPRNIDNAKLSSTLFHSPINLSSNPNISL QFLNKKQSPLLSSTPRFLTVIAMAPPKPGGKAKKVVGSIKLALEAGKATPAPPVGPAL GAKGVNIMAFCKDYNARTADKAGYIIPVEITVYDDRSFTFVLKTPPASVLLLKAAGVE KGSKDPKQEKVGKVTIDQVRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDVDPPIL EPKKKELV" mobile_element complement(28696340..28696770) /note="source:INTACT135F_F90_scaffold_2-int 13540 13993" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28698049..28698334 /note="source:CACAO_hAT_E71_scaffold_1 589 860" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(28698133..28698197) /note="source:scaffold_3_CACTA_0398 3299 3661" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28698198..28698532 /note="source:CACAO_on_SS_E42_scaffold_2 24177 24524" /mobile_element_type="transposon:TIR/Mutator" gene 28698628..28699515 /locus_tag="TCM_015599" /note="dbxref CacaoGD:Thecc1EG015599" mRNA 28698628..28699515 /locus_tag="TCM_015599" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g031740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015600t1" /inference="similar to AA sequence:ricco:30068.m002608" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2739t1" CDS 28698737..28699222 /locus_tag="TCM_015599" /note="dbxref ricco:30068.m002608; paralog of Thecc1EG015600t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23826.1" /translation="MGGLCFPCVIVTTTNMNSFLLTLLFDLLARFTFMLEEALVHLGL LNPTEEAHSADPYPTHYVLSMDNRSPSVLPAAPVQVKTTLIKSSALPVVKYGNSIRRS KVEEHGDEDDLICAVCLNYIEKSDEIKELSNCSHVFHRECLDTWINKDQVTCPLCRST L" mobile_element complement(28700960..28701864) /note="source:scaffold_4_CACTA_0511 12909 13840" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28702201..28702770 /note="source:CACAO_Helitron_E81_scaffold_3 2558 3108" /mobile_element_type="transposon:Helitron" gene 28703104..28704874 /locus_tag="TCM_015600" /note="dbxref CacaoGD:Thecc1EG015600" mRNA join(28703104..28703430,28704238..28704874) /locus_tag="TCM_015600" /product="Brassinosteroid-responsive RING-H2, putative" /inference="alignment:exonerate- protein:2:ricco:30068.m002608" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015599t1" /inference="similar to AA sequence:ricco:30068.m002608" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1781t2" CDS 28704277..28704768 /locus_tag="TCM_015600" /note="dbxref ricco:30068.m002608; paralog of Thecc1EG015599t1" /codon_start=1 /product="Brassinosteroid-responsive RING-H2, putative" /protein_id="EOY23827.1" /translation="MKMKKCIAPTIFLLNLVNYFKFLFKEAFTHLGLLKPQPELEEDY YSATYGNAYVLLMDGRSGSLVPVPIQVVTAMIKKNLPVLEYGTFIGRFGDDEQVENKT VCTVCLDSMEKSDEIRVLCKCCHVFHKECLDTWVNEGQVTCPLCRSTLYPDRIDWTGK LGS" gene complement(28708331..28713572) /locus_tag="TCM_015601" /note="dbxref CacaoGD:Thecc1EG015601" mRNA complement(join(28708331..28709167,28709267..28709459, 28709659..28709773,28709850..28710092,28710175..28710266, 28710349..28711019,28711106..28711261,28711352..28711449, 28711541..28711693,28712688..28713572)) /locus_tag="TCM_015601" /product="Subtilase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002606" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006796t1" /inference="similar to AA sequence:ricco:30068.m002606" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8545t2" mRNA complement(join(28708415..28709167,28709267..28709459, 28709659..28709773,28709850..28710092,28710175..28710266, 28710349..28711019,28711106..28711261,28711352..28711449, 28711541..28711632,28711726..28711978)) /locus_tag="TCM_015601" /product="Subtilase family protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene01860" /inference="alignment:exonerate- protein:2:ricco:30068.m002606" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006796t1" /inference="similar to AA sequence:ricco:30068.m002606" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8545t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8545t2" CDS complement(join(28708599..28709167,28709267..28709459, 28709659..28709773,28709850..28710092,28710175..28710266, 28710349..28711019,28711106..28711261,28711352..28711449, 28711541..28711693,28712688..28713007)) /locus_tag="TCM_015601" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002606; paralog of Thecc1EG006796t1" /codon_start=1 /product="Subtilase family protein, putative isoform 1" /protein_id="EOY23828.1" /db_xref="TAIR:AT4G10550.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0R2" /translation="MKSSKLKVSSTWTPPPYGTLKLNINGAAKGKPGPAGIGGVLRDH QDVIKGTFSHNIGIKDSNFAEFQAKPFTRALNFSLPLHGPPTLTWKLKAIPLTPFSGR ETIAKSNGFFFSPTSILVHLNAMSQVHIVYMGEKKHQDPATTKMSHHKMLSTLLGSKE AAKNSMLYSYKHGFSGFAARLTESQAEEIAAFPGVVHVIPNRIHRLHTTRSWEFMGLK YHSSKNLLTQSNMGEGTIIGVIDSGVWPESESFNDRGMGPIPSRWKGTCQEGQLFNSS NCNKKLIGARWFIKGILDQIQTPINISNGEEFLSARDNSGHGTHTASTAAGNFVQNAN YEGLAAGLARGGAPRAHLAVYKACWSFESGGCTDADILKAFDKAIQDGVDILSVSVGN SIPLYSYVDQRNSIAIGSFHATAKGITVACSAGNDGPTAMTIENTAPWIINVAATTVD RAFATAITLGNNLTLWGQSVDTGIHNHGFTGITFSDRIAANSSDDSAQDCQPGSLNAT LAAGKIILCFAQSSIQDISSAAISVLEAGGVGLIFAQYRSDGLGSCHHIPCIKVDYEV GTQILSYIRKARSPMAKLSIPKTVIGKWIYPRVADFSARGPSSISPAVLKPDIAAPGV DILAAYIPVGKEKSSGYKFMSGTSMSCPHVAGIAALIKSVHKNWSPAAIRSALVTTAS QTRTDGSNIAEEGSTRKAADPFDIGGGLVNPNKAVNPGLIYDAGIEDYVQFLCGTGYS SKAVTGLTQTQVNCTKSRLNVLNLNLPSITIPNLKRKVTVTRAVTNVGPVDSVYKAIM QAPQGIKLKVEPQILSFNKTTQILPFKVTFFSTRKVSGDYRFGSLSWTDGKHIVRSPI SVRAILFESYVDT" CDS complement(join(28708599..28709167,28709267..28709459, 28709659..28709773,28709850..28710092,28710175..28710266, 28710349..28711019,28711106..28711261,28711352..28711449, 28711541..28711632,28711726..28711827)) /locus_tag="TCM_015601" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002606; paralog of Thecc1EG006796t1" /codon_start=1 /product="Subtilase family protein, putative isoform 2" /protein_id="EOY23829.1" /db_xref="TAIR:AT4G10550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0R2" /translation="MMDTKLNLLIVVALVSIQSHLQFLPKCVEAAKSNVHIVYMGEKK HQDPATTKMSHHKMLSTLLGSKEAAKNSMLYSYKHGFSGFAARLTESQAEEIAAFPGV VHVIPNRIHRLHTTRSWEFMGLKYHSSKNLLTQSNMGEGTIIGVIDSGVWPESESFND RGMGPIPSRWKGTCQEGQLFNSSNCNKKLIGARWFIKGILDQIQTPINISNGEEFLSA RDNSGHGTHTASTAAGNFVQNANYEGLAAGLARGGAPRAHLAVYKACWSFESGGCTDA DILKAFDKAIQDGVDILSVSVGNSIPLYSYVDQRNSIAIGSFHATAKGITVACSAGND GPTAMTIENTAPWIINVAATTVDRAFATAITLGNNLTLWGQSVDTGIHNHGFTGITFS DRIAANSSDDSAQDCQPGSLNATLAAGKIILCFAQSSIQDISSAAISVLEAGGVGLIF AQYRSDGLGSCHHIPCIKVDYEVGTQILSYIRKARSPMAKLSIPKTVIGKWIYPRVAD FSARGPSSISPAVLKPDIAAPGVDILAAYIPVGKEKSSGYKFMSGTSMSCPHVAGIAA LIKSVHKNWSPAAIRSALVTTASQTRTDGSNIAEEGSTRKAADPFDIGGGLVNPNKAV NPGLIYDAGIEDYVQFLCGTGYSSKAVTGLTQTQVNCTKSRLNVLNLNLPSITIPNLK RKVTVTRAVTNVGPVDSVYKAIMQAPQGIKLKVEPQILSFNKTTQILPFKVTFFSTRK VSGDYRFGSLSWTDGKHIVRSPISVRAILFESYVDT" gene complement(28714480..28717151) /locus_tag="TCM_015602" /note="dbxref CacaoGD:Thecc1EG015602" mRNA complement(join(28714480..28715264,28715418..28715610, 28715748..28715862,28715963..28716199,28716459..28716541, 28716751..28717151)) /locus_tag="TCM_015602" /product="Subtilase family protein" /inference="alignment:exonerate-protein:2:frave:gene01862" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015603t1" /inference="similar to AA sequence:frave:gene01862" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1363t3" CDS complement(join(28714693..28715264,28715418..28715610, 28715748..28715862,28715963..28716199,28716459..28716541, 28716751..28717089)) /locus_tag="TCM_015602" /note="dbxref frave:gene01862; paralog of Thecc1EG015603t1" /codon_start=1 /product="Subtilase family protein" /protein_id="EOY23830.1" /db_xref="TAIR:AT1G32950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T0B5" /translation="MYKVCWNVPQGQCSSADILKAFDEAIHDGVDVLSLSLGTQIPLF AEVDERDGIAIGSFHAVANGIPVVCAASNFGPAAQTVHNTAPWIITVAATTLDRSFPT PIMLGNNVTILGQAWYAGKEIGLTGLVYPENPGLRPTLASLSFNHTSVDGKVVLCFTT VTGRSAVSSAVSAVRAAGGVGLIVAKNPGHVMGPCGDDFPCVVVDYELGTEILFYIRS ARSPTVKISPSKTLVGKPASIKVATFSSRGPSSITPGILKPDIAAPGVSLLAASSPLD PFMNGGFALHSGTSMAAPVISGIIALLKSKHPNWSPAAIRSAIVTTAWKNDPLGEPIF AEGSPRKLADPFDFGGGLVNPNRASKPGLVYDMDTDDYVHYLCAVGYNNSAISKLVGQ GIACPSAKPSVLDVNVPSITIPNLRNSATLTRRVTNVGPPNSTYKALVEPPFGITVTV TPNILVFHSTAQEISYQVRVSTSHQVNTGYYFGSLTWTDGVHNVAIPISARTQILQNY ADEN" gene complement(28716513..28725233) /locus_tag="TCM_015603" /note="dbxref CacaoGD:Thecc1EG015603" mRNA complement(join(28716513..28716541,28716751..28716953, 28717081..28717424,28717523..28717678,28717906..28718003, 28718623..28718714,28718797..28718934,28721353..28721810, 28721910..28722102,28722496..28722610,28722700..28722945, 28723043..28723128,28723258..28723931,28724020..28724175, 28724336..28724433,28724545..28724636,28724738..28725233)) /locus_tag="TCM_015603" /product="Subtilase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047016t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019686001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1706t2" CDS complement(join(28716906..28716953,28717081..28717424, 28717523..28717678,28717906..28718003,28718623..28718714, 28718797..28718934,28721353..28721810,28721910..28722102, 28722496..28722610,28722700..28722945,28723043..28723128, 28723258..28723931,28724020..28724175,28724336..28724433, 28724545..28724636,28724738..28724833)) /locus_tag="TCM_015603" /note="paralog of Thecc1EG047016t1" /codon_start=1 /product="Subtilase family protein, putative" /protein_id="EOY23831.1" /db_xref="Phytozome:GSVIVT01019686001" /db_xref="TAIR:AT4G10540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H766" /translation="MGNPMPFFVTVFILLVLNGHGLMTTKVEAKSNVHIVYLGERQLD DPKLVTDSHHDLLATVVGSKEVASDLMVYSYRHGFSGFAAKLTESQAQKLSELPGVVR VIPNSLHRLQTTRSWDFLGLSSHYPTNILQNSKMGDGVIIGVFDTGIWPESKAFSDEG LGPIPSRWKGVCKSGDHFNAATHCNRKIIGARWFIDGFLAEYGQPFNTSEDPEYFSPR DANGHGTHTSSTAGGSYVRNVSYRGLGPGTVRGGAPHARLAIYKVCWNVLGGQCASAD ILKAFDEAIHDGVDVLSLSIGYSLPLFSDVDERDGIATGSFHAVARGITVVCGAANDG PSAQTVQNTAPWIVTVAASTMDRAFPTPITLGNNKTFLGQAIFTGKENGFTGLTYPEG TGLDPTSAGACQDLLLNSTLVAGKVVLCFASVARRVAIRSAAATLQEAGGTGLIIAKN PSDALTECSNDFPCIEVDYEIGTRILYYIRSAKSPTVKLSPSKTLVGKPVSAKVAFFS SRGPSSIAPEILKPDITAPGVNILAAISQLNQLRDDGYAIRSGTSMATPHVSGIVALL KAIHPDWSPAAIKSALVTTAWTKDASGLPLFAEGSPQKLANPFDFGGGIVNPNGAADP GLVYDMGTSDYIQYLCAMGYNDSAISRLTGQSTVCPIKKPSILDVNVPSITISSLRNS ATLTRTVTNVGAPISVYRAVIEPPTGITVTVRPNVLVFNSTTKKISFSVTVSAAHQKY ATNTMGRLLIAISSYRTSLILLVNLFLILNGQNRFAAAVNAESRVHIVYMGERQQNDP KLITEFHHDLLATIVGSKEAAVDSMVYTYKHGFSGFAAKLTESQAQQISELPEVVHVI PNRFHSLQTTRTWDYLDISSYSPFNLLHDTDMGDGIIIGLLDTGVWPESVVFNDEGLE PIPARWKGLCESGQLFNGTTDCNRKLIGAKYFIDGFLAGNNQPFNTTDNPDYMSPRDS FGHGTHTSTIAGGSFVANASYKGLALGTSRGGAPRARIAMYKKLMSVMGLPLVHSML" gene complement(28726219..28727651) /locus_tag="TCM_015604" /note="dbxref CacaoGD:Thecc1EG015604" mRNA complement(join(28726219..28726839,28727235..28727651)) /locus_tag="TCM_015604" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" mobile_element complement(28726233..28726296) /note="source:CACAO_on_SS_E42_scaffold_2 23391 23456" /mobile_element_type="transposon:TIR/Mutator" CDS complement(join(28726516..28726839,28727235..28727609)) /locus_tag="TCM_015604" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23832.1" /translation="MSIREKGKEVKNQRPRFLTPLGHAHLKLAHYKDIFQALFMNLFY LKFIPVQDPESVAVSRSLFSCGYSTYVGFKVELATSFEPDSGAGLSSLGYHETIIIGP FATHFNRGSGCLTPPIVKLSVKRQLVILYAKADVTCHFIMWFKFNSLMHRTSVGNFLE CDPFKSKRLWIEAYPFINFIPSADMYMMLKENWCNNIVPLWTRSELNKLFVALERRGP FLPDVEGYPASIIF" mobile_element complement(28729083..28729144) /note="source:INTACT495_F229_scaffold_2-int 2829 2890" /mobile_element_type="retrotransposon:LTR/Copia" gene 28730137..28735418 /locus_tag="TCM_015605" /note="dbxref CacaoGD:Thecc1EG015605" mRNA join(28730137..28730619,28731725..28731824, 28731902..28731963,28732147..28732358,28732440..28732503, 28732599..28732671,28733216..28733336,28733433..28733520, 28733605..28733730,28733811..28733920,28734517..28735308) /locus_tag="TCM_015605" /product="Galactosyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002602" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036027t2" /inference="similar to AA sequence:ricco:30068.m002602" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8571t5; inference alignment:Newbler:10:TSA:cgbaB_g05393t00001" mRNA join(28730263..28730619,28731725..28731824, 28731917..28731963,28732147..28732358,28732440..28732503, 28732599..28732671,28733216..28733336,28733433..28733520, 28733605..28733730,28733811..28733920,28734517..28735116) /locus_tag="TCM_015605" /product="Galactosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002602" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036027t2" /inference="similar to AA sequence:ricco:30068.m002602" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05393t00001; inference alignment:Newbler:10:TSA:cgbaB_g05393t00001" mRNA join(28730427..28730619,28731725..28731824, 28731902..28731963,28732147..28732503,28732599..28732671, 28733216..28733336,28733433..28733520,28733605..28733730, 28733811..28733920,28734517..28735418) /locus_tag="TCM_015605" /product="Beta-1,3-galactosyltransferase 6 isoform 4" /inference="alignment:exonerate- protein:2:ricco:30068.m002602" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030859t1" /inference="similar to AA sequence:ricco:30068.m002602" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc272t6; inference alignment:Newbler:10:TSA:cgbaB_g05393t00001" mRNA join(28730427..28730619,28731725..28731824, 28731902..28731963,28732147..28732358,28732440..28732503, 28732599..28732671,28733216..28733336,28733433..28733520, 28733605..28733730,28733811..28733908,28734517..28735418) /locus_tag="TCM_015605" /product="Beta-1,3-galactosyltransferase 6 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30068.m002602" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030859t1" /inference="similar to AA sequence:ricco:30068.m002602" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc272t9; inference alignment:Newbler:10:TSA:cgbaB_g05393t00001" CDS join(28730516..28730619,28731725..28731824, 28731902..28731963,28732147..28732503,28732599..28732671, 28733216..28733336,28733433..28733520,28733605..28733730, 28733811..28733920,28734517..28734665) /locus_tag="TCM_015605" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30068.m002602; paralog of Thecc1EG030859t1" /codon_start=1 /product="Beta-1,3-galactosyltransferase 6 isoform 4" /protein_id="EOY23836.1" /db_xref="TAIR:AT1G32930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MAP8" /translation="MGLSRPQKPGNGVSTRWVSLFCITSFFLGVLVVNRFLAISDPAK MDEEASSVKKHQRNELHPIVNCDKDASFQAGDILFQVSQTHDVIMTLDKTISSLEMQL AAARAAKADSDEGSPMVTKSGIENVKERQKVFFVMGVITAFSSRKRRDSIRETWMPQG LIQYSLDILSSIFWNLVIYTLRLWFLGKELMRLEKEKGIIMRFVIGHSATPGGVLDRA IDAEEKQHKDFLRLNHIEGYHELSSKTQIYFSTAVSKWDADFYIKVDDDVHVNLGMVG STLARHRSKPRVYIGCMKSGPVLAQKGVKYHEPEYWKFGEEGNKYFRHATGQIYAISK DLATYISVNRHILHRYANEDVSLGSWFIGLDVEHIDDRSLCCGTPPDCEWKAQAGNPC AASFDWSCSGICKSVERMEEVHQRCGEGDEAIWHTSF" CDS join(28730516..28730619,28731725..28731824, 28731902..28731963,28732147..28732358,28732440..28732503, 28732599..28732671,28733216..28733336,28733433..28733520, 28733605..28733730,28733811..28733920,28734517..28734665) /locus_tag="TCM_015605" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002602; paralog of Thecc1EG036027t2" /codon_start=1 /product="Galactosyltransferase family protein isoform 2" /protein_id="EOY23834.1" /db_xref="TAIR:AT1G32930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MAP8" /translation="MGLSRPQKPGNGVSTRWVSLFCITSFFLGVLVVNRFLAISDPAK MDEEASSVKKHQRNELHPIVNCDKDASFQAGDILFQVSQTHDVIMTLDKTISSLEMQL AAARAAKADSDEGSPMVTKSGIENVKERQKVFFVMGVITAFSSRKRRDSIRETWMPQG KELMRLEKEKGIIMRFVIGHSATPGGVLDRAIDAEEKQHKDFLRLNHIEGYHELSSKT QIYFSTAVSKWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMKSGPVLAQKG VKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISVNRHILHRYANEDVSLGSWF IGLDVEHIDDRSLCCGTPPDCEWKAQAGNPCAASFDWSCSGICKSVERMEEVHQRCGE GDEAIWHTSF" CDS join(28730516..28730619,28731725..28731824, 28731902..28731963,28732147..28732358,28732440..28732503, 28732599..28732671,28733216..28733336,28733433..28733520, 28733605..28733730,28733811..28733908,28734517..28734665) /locus_tag="TCM_015605" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30068.m002602; paralog of Thecc1EG030859t1" /codon_start=1 /product="Beta-1,3-galactosyltransferase 6 isoform 3" /protein_id="EOY23835.1" /db_xref="TAIR:AT1G32930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MAP8" /translation="MGLSRPQKPGNGVSTRWVSLFCITSFFLGVLVVNRFLAISDPAK MDEEASSVKKHQRNELHPIVNCDKDASFQAGDILFQVSQTHDVIMTLDKTISSLEMQL AAARAAKADSDEGSPMVTKSGIENVKERQKVFFVMGVITAFSSRKRRDSIRETWMPQG KELMRLEKEKGIIMRFVIGHSATPGGVLDRAIDAEEKQHKDFLRLNHIEGYHELSSKT QIYFSTAVSKWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMKSGPVLAQKG VKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISVNRHILHRYANEDVSLGSWF IGLDVEHIDDRSLCCDCEWKAQAGNPCAASFDWSCSGICKSVERMEEVHQRCGEGDEA IWHTSF" CDS join(28730516..28730619,28731725..28731824, 28731917..28731963,28732147..28732358,28732440..28732503, 28732599..28732671,28733216..28733336,28733433..28733520, 28733605..28733730,28733811..28733920,28734517..28734665) /locus_tag="TCM_015605" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002602; paralog of Thecc1EG036027t2" /codon_start=1 /product="Galactosyltransferase family protein isoform 1" /protein_id="EOY23833.1" /db_xref="TAIR:AT1G32930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MAP8" /translation="MGLSRPQKPGNGVSTRWVSLFCITSFFLGVLVVNRFLAISDPAK MDEEASSVKKHQRNELHPIVNCDKAGDILFQVSQTHDVIMTLDKTISSLEMQLAAARA AKADSDEGSPMVTKSGIENVKERQKVFFVMGVITAFSSRKRRDSIRETWMPQGKELMR LEKEKGIIMRFVIGHSATPGGVLDRAIDAEEKQHKDFLRLNHIEGYHELSSKTQIYFS TAVSKWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMKSGPVLAQKGVKYHE PEYWKFGEEGNKYFRHATGQIYAISKDLATYISVNRHILHRYANEDVSLGSWFIGLDV EHIDDRSLCCGTPPDCEWKAQAGNPCAASFDWSCSGICKSVERMEEVHQRCGEGDEAI WHTSF" mobile_element complement(28735446..28735594) /note="source:CACAO_on_S_E390_scaffold_9 2209 2369" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(28735630..28735762) /note="source:scaffold_1_CACTA_0001 8389 8528" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28735661..28735927) /note="source:CACAO_MITE45_scaffold_3 440 718" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(28735904..28736321) /note="source:CACAO_MITE159_scaffold_10 18 435" /mobile_element_type="transposon:TIR/MITE" gene 28739266..28742400 /locus_tag="TCM_015607" /note="dbxref CacaoGD:Thecc1EG015607" mRNA join(28739266..28739889,28740144..28740306, 28740475..28740651,28740737..28740820,28741320..28741401, 28741677..28742400) /locus_tag="TCM_015607" /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30068.m002601" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015508t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s45410.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05917t00001" CDS join(28739537..28739889,28740144..28740306, 28740475..28740651,28740737..28740820,28741320..28741401, 28741677..28742119) /locus_tag="TCM_015607" /note="paralog of Thecc1EG015508t1" /codon_start=1 /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein" /protein_id="EOY23837.1" /db_xref="Phytozome:POPTR_0001s45410.1" /db_xref="TAIR:AT1G64720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0R9" /translation="MGVVSVFLEILRKPTIGDVLSELMMFIAPLWVAVIVGVLVGWAW KPKWASLGREMLMDCSGSKDSTPAASESSSSGFGSISSLNLIKFQLPSCIPWITDDGA QKDSFSLPPTIDSNCSSSQIGKEKTGFVTDEDLEHLCKLVEEKDGGPAWIQMMDRSTP TMGYQAWRRDPQTGPPQYRSRTVFDDATPEMVRDFFWDDEFRAKWDDMLVSSATMEEC PTTGTMVVHWVRKFPFFCSDREYVIGRRIWESGRFYYCVTKGVPYASVPRKNKPRRVD LYYSSWCIRAVESRKGDGQLTACEVLLFHHEDMGIPWEIAKLGVRQGMWGAVKKIDPG LRAYQKERASGAPLSHCAFMAQINAKVSADYLRSLESNSSDSSELETHNKSEKPLGRN IPKLLVIGGAIALACSLDRGLLTKAVIFGVARRFAKIGRRL" gene complement(28743310..28744043) /locus_tag="TCM_015608" /note="dbxref CacaoGD:Thecc1EG015608" mRNA complement(28743310..28744043) /locus_tag="TCM_015608" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30068.m002600" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01940t00001_C2" CDS complement(28743689..28743943) /locus_tag="TCM_015608" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23838.1" /translation="MNSIFSSFDAFCAEFLGQAIRPSFASTTNKDGNSFLGSRGVTNK VTENMKKKQEGNVEKKQQVKAPRFAPELDGLNCFETLVSY" gene 28744434..28745147 /locus_tag="TCM_015609" /note="dbxref CacaoGD:Thecc1EG015609" mRNA 28744434..28745147 /locus_tag="TCM_015609" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS 28744538..28744738 /locus_tag="TCM_015609" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23839.1" /translation="MGWVVDPFRDCLLLGRIQIALILQGNGKVNRTWHLATLFYHLQF QIAFKQSQLAQPYLFLLCNFLR" mobile_element 28745431..28745480 /note="source:INTACT415F_F22_scaffold_4-int 2194 2246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28745438..28745502) /note="source:scaffold_5_CACTA_0584 1920 1975" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28745627..28745804 /note="source:scaffold_5_CACTA_0580 4454 4626" /mobile_element_type="transposon:TIR/CACTA" gene 28749320..28750778 /locus_tag="TCM_015610" /note="dbxref CacaoGD:Thecc1EG015610" mRNA join(28749320..28749437,28749892..28749992, 28750323..28750778) /locus_tag="TCM_015610" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30068.m002599.2" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc585t13" CDS join(28749324..28749437,28749892..28749992, 28750323..28750497) /locus_tag="TCM_015610" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23840.1" /translation="MKGSGPLVATVLAASTVALTSSSSSGLDVSFSPTSSDQRYNSTV KKGTSRNCTASEKEKFAPRFDGLRFIETGNFKFYNNNLPSVVIVSSRNPTGDGIWAGH GRIAFCIAFLVMRCRLCVSFVCQLQET" gene 28751044..28752126 /locus_tag="TCM_015611" /note="dbxref CacaoGD:Thecc1EG015611" mRNA 28751044..28752126 /locus_tag="TCM_015611" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc606t7" CDS 28751139..28751342 /locus_tag="TCM_015611" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23841.1" /translation="MKHEGYADMTVGIYSFGAASLSGWHTLVHNFKLSVTFSFIQRHK TFGHTSFVANISHRLVDLWLDGK" mobile_element complement(28752172..28752244) /note="source:scaffold_3_CACTA_0377 2494 2568" /mobile_element_type="transposon:TIR/CACTA" gene 28753045..28758044 /locus_tag="TCM_015612" /note="dbxref CacaoGD:Thecc1EG015612" mRNA join(28753045..28753186,28753426..28753796, 28753942..28754022,28754144..28754242,28754368..28754457, 28755039..28755102,28755194..28755294,28755386..28755495, 28755602..28755845,28755925..28756101,28756198..28756389, 28756525..28756611,28756725..28756853,28756995..28757442, 28757700..28758044) /locus_tag="TCM_015612" /product="UDP-Glycosyltransferase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400021398" /inference="similar to AA sequence:Phytozome:GSVIVT01019680001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04651t00001" CDS join(28753455..28753796,28753942..28754022, 28754144..28754242,28754368..28754457,28755039..28755102, 28755194..28755294,28755386..28755495,28755602..28755845, 28755925..28756101,28756198..28756389,28756525..28756611, 28756725..28756853,28756995..28757111) /locus_tag="TCM_015612" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 1" /protein_id="EOY23842.1" /db_xref="Phytozome:GSVIVT01019680001" /db_xref="TAIR:AT1G32900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DEV5" /translation="MATVTASHFVSRSSHVNSQETKAKLAQIGMRNQAMTHNGLRSLN QVDRLQMRTHAKAVARQAVKEGHPTANDRPSGKIICGTGMNLVFVGAEVGPWSKTGGL GDVVGGLPPAMAARGHRVMTVSPRYDQYKDAWDTSVLVQLIVGDKIETVRFFHCYKRG VDRVFVDHPMFLEKVWGKTGSKIYGPRTGLDYKDNQLRFSLLCQAALEAPRVLNLNSN KYFSGPYGEDVVFIANDWHTALLPCYLKSMYQSRGIYMNAKVAFCIHNIVYQGRFAFA DFSLLNLPARFKSSFDFMDGYDKPVKGRKINWMKAGIIESDRVLTVSPYYAQELVSGA DKGAELDTIIRKACITGIVNGMDVQEWNPATDKYISVKYDATTVMDAKPLLKEALQAE VGLPCDRDVPVIGFIARLEEQKGSDILAKAIPKFIAENCQIVALGTGKKAMEKQLEQL ELQYPDKARGVAKFNVPLAHMIIAGADYILVPSRFEPCGLIQLHAMRYGTVPIVASTG GLVDTVKEGYTGFQMGAFSIECDAVDPSDVDKVARSIKRALATYGTQALKEMIQNCMA QDLSWKGPSKLWEKMLLSLEVAGSEPGIEGEEIAPLAKENVPTP" mRNA join(28753947..28754022,28754144..28754242, 28754368..28754457,28755039..28755102,28755194..28755294, 28755386..28755495,28755602..28755845,28755925..28756101, 28756198..28756389,28756525..28756611,28756725..28756853, 28756995..28757394) /locus_tag="TCM_015612" /product="UDP-Glycosyltransferase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400021398" /inference="similar to AA sequence:Phytozome:GSVIVT01019680001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc328t25; inference alignment:Newbler:10:TSA:cgbaB_g04651t00001" CDS join(28753960..28754022,28754144..28754242, 28754368..28754457,28755039..28755102,28755194..28755294, 28755386..28755495,28755602..28755845,28755925..28756101, 28756198..28756389,28756525..28756611,28756725..28756853, 28756995..28757111) /locus_tag="TCM_015612" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 2" /protein_id="EOY23843.1" /db_xref="Phytozome:GSVIVT01019680001" /db_xref="TAIR:AT1G32900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DEV5" /translation="MTVSPRYDQYKDAWDTSVLVQLIVGDKIETVRFFHCYKRGVDRV FVDHPMFLEKVWGKTGSKIYGPRTGLDYKDNQLRFSLLCQAALEAPRVLNLNSNKYFS GPYGEDVVFIANDWHTALLPCYLKSMYQSRGIYMNAKVAFCIHNIVYQGRFAFADFSL LNLPARFKSSFDFMDGYDKPVKGRKINWMKAGIIESDRVLTVSPYYAQELVSGADKGA ELDTIIRKACITGIVNGMDVQEWNPATDKYISVKYDATTVMDAKPLLKEALQAEVGLP CDRDVPVIGFIARLEEQKGSDILAKAIPKFIAENCQIVALGTGKKAMEKQLEQLELQY PDKARGVAKFNVPLAHMIIAGADYILVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD TVKEGYTGFQMGAFSIECDAVDPSDVDKVARSIKRALATYGTQALKEMIQNCMAQDLS WKGPSKLWEKMLLSLEVAGSEPGIEGEEIAPLAKENVPTP" gene 28757267..28760786 /locus_tag="TCM_015614" /note="dbxref CacaoGD:Thecc1EG015614" mRNA join(28757267..28757576,28757696..28758617, 28758716..28759819,28759855..28759864,28760004..28760112) /locus_tag="TCM_015614" /product="Glucan endo-1,3-beta-glucosidase 11 isoform 4" /inference="alignment:exonerate- protein:2:ricco:30068.m002597" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041403t2" /inference="similar to AA sequence:ricco:30068.m002597" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc132t23; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc132t29; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8685t2" mRNA join(28757671..28758617,28758716..28759822, 28760007..28760026,28760147..28760202,28760497..28760786) /locus_tag="TCM_015614" /product="Glucan endo-1,3-beta-glucosidase 11 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002597" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041403t2" /inference="similar to AA sequence:ricco:30068.m002597" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8685t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8685t2" mRNA join(28757671..28758617,28758716..28759821, 28760004..28760202,28760497..28760786) /locus_tag="TCM_015614" /product="Glucan endo-1,3-beta-glucosidase 11 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002597" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041403t2" /inference="similar to AA sequence:ricco:30068.m002597" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8685t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8685t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc132t29" mRNA join(28757671..28758617,28758716..28759821, 28760007..28760786) /locus_tag="TCM_015614" /product="Glucan endo-1,3-beta-glucosidase 11 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30068.m002597" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041403t2" /inference="similar to AA sequence:ricco:30068.m002597" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:PASA:2:TSA:puevd3b015088t1a3; alternateUTRof:Thecc1EG015614t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8685t2" mRNA join(28757671..28758617,28758716..28759821, 28760007..28760202,28760497..28760786) /locus_tag="TCM_015614" /product="Glucan endo-1,3-beta-glucosidase 11 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30068.m002597" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041403t2" /inference="similar to AA sequence:ricco:30068.m002597" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:PASA:2:TSA:puevd3b015088t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8685t2" mRNA join(28758099..28758617,28758716..28759821, 28760497..28760706) /locus_tag="TCM_015614" /product="Glucan endo-1,3-beta-glucosidase 11 isoform 6" /inference="alignment:exonerate- protein:2:ricco:30068.m002597" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041403t2" /inference="similar to AA sequence:ricco:30068.m002597" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01301t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc132t29; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8685t2" CDS join(28758566..28758617,28758716..28759821, 28760497..28760529) /locus_tag="TCM_015614" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30068.m002597; paralog of Thecc1EG041403t2" /codon_start=1 /product="Glucan endo-1,3-beta-glucosidase 11 isoform 6" /protein_id="EOY23849.1" /db_xref="TAIR:AT1G32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L868" /translation="MGFPRFFCYASIILSISAYLFPIMVNSIGINYGQIANNLPSPED VVPLVKSIGATKVKLYDADPGVLSAFANTGVEFIVGLGNEYLDRMQDPAKAEAWVKQN VQAHLPATKVTCIFVGNEVLTFNDTTLSDNLLPAMQSVHTALVNLGLDKQVTVTTAHS LAILETSYPPSAGAFREDLIDCLSETLSFHQKTGSPFLINAYPYFAYKGNPKQVSLDF VLFQPNQGVIDQATNLHYDNMLYAQIDAVYSALASLGYKKLAVHISETGWPSKGDEDE AGATPDNAKKYNGNLIKLMSKKTGTPMRPNSDLNIYVFALFNENMKPGPTSERNYGLF KPDGTPVYPLGISTNDVVGSNTTAGGSIGNAVTQPSSPTSSSTGYLSISSATGVRLLI ERVW" CDS join(28758566..28758617,28758716..28759822, 28760007..28760026,28760147..28760202,28760497..28760512) /locus_tag="TCM_015614" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002597; paralog of Thecc1EG041403t2" /codon_start=1 /product="Glucan endo-1,3-beta-glucosidase 11 isoform 1" /protein_id="EOY23844.1" /db_xref="TAIR:AT1G32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L868" /translation="MGFPRFFCYASIILSISAYLFPIMVNSIGINYGQIANNLPSPED VVPLVKSIGATKVKLYDADPGVLSAFANTGVEFIVGLGNEYLDRMQDPAKAEAWVKQN VQAHLPATKVTCIFVGNEVLTFNDTTLSDNLLPAMQSVHTALVNLGLDKQVTVTTAHS LAILETSYPPSAGAFREDLIDCLSETLSFHQKTGSPFLINAYPYFAYKGNPKQVSLDF VLFQPNQGVIDQATNLHYDNMLYAQIDAVYSALASLGYKKLAVHISETGWPSKGDEDE AGATPDNAKKYNGNLIKLMSKKTGTPMRPNSDLNIYVFALFNENMKPGPTSERNYGLF KPDGTPVYPLGISTNDVVGSNTTAGGSIGNAVTQPSSPTSSSTGYLSISSATGKISIH RGNGEGDIKRIRGSFVVRERVLGC" CDS join(28758566..28758617,28758716..28759821, 28760004..28760075) /locus_tag="TCM_015614" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002597; paralog of Thecc1EG041403t2" /codon_start=1 /product="Glucan endo-1,3-beta-glucosidase 11 isoform 2" /protein_id="EOY23845.1" /db_xref="TAIR:AT1G32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L868" /translation="MGFPRFFCYASIILSISAYLFPIMVNSIGINYGQIANNLPSPED VVPLVKSIGATKVKLYDADPGVLSAFANTGVEFIVGLGNEYLDRMQDPAKAEAWVKQN VQAHLPATKVTCIFVGNEVLTFNDTTLSDNLLPAMQSVHTALVNLGLDKQVTVTTAHS LAILETSYPPSAGAFREDLIDCLSETLSFHQKTGSPFLINAYPYFAYKGNPKQVSLDF VLFQPNQGVIDQATNLHYDNMLYAQIDAVYSALASLGYKKLAVHISETGWPSKGDEDE AGATPDNAKKYNGNLIKLMSKKTGTPMRPNSDLNIYVFALFNENMKPGPTSERNYGLF KPDGTPVYPLGISTNDVVGSNTTAGGSIGNAVTQPSSPTSSSTGYLSISSATQERYQF IGHVLLPASFLLIKTLV" CDS join(28758566..28758617,28758716..28759821, 28760007..28760075) /locus_tag="TCM_015614" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30068.m002597; paralog of Thecc1EG041403t2" /codon_start=1 /product="Glucan endo-1,3-beta-glucosidase 11 isoform 3" /protein_id="EOY23846.1" /db_xref="TAIR:AT1G32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L868" /translation="MGFPRFFCYASIILSISAYLFPIMVNSIGINYGQIANNLPSPED VVPLVKSIGATKVKLYDADPGVLSAFANTGVEFIVGLGNEYLDRMQDPAKAEAWVKQN VQAHLPATKVTCIFVGNEVLTFNDTTLSDNLLPAMQSVHTALVNLGLDKQVTVTTAHS LAILETSYPPSAGAFREDLIDCLSETLSFHQKTGSPFLINAYPYFAYKGNPKQVSLDF VLFQPNQGVIDQATNLHYDNMLYAQIDAVYSALASLGYKKLAVHISETGWPSKGDEDE AGATPDNAKKYNGNLIKLMSKKTGTPMRPNSDLNIYVFALFNENMKPGPTSERNYGLF KPDGTPVYPLGISTNDVVGSNTTAGGSIGNAVTQPSSPTSSSTGYLSISSATERYQFI GHVLLPASFLLIKTLV" CDS join(28758566..28758617,28758716..28759821, 28760007..28760075) /locus_tag="TCM_015614" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30068.m002597; paralog of Thecc1EG041403t2" /codon_start=1 /product="Glucan endo-1,3-beta-glucosidase 11 isoform 3" /protein_id="EOY23848.1" /db_xref="TAIR:AT1G32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L868" /translation="MGFPRFFCYASIILSISAYLFPIMVNSIGINYGQIANNLPSPED VVPLVKSIGATKVKLYDADPGVLSAFANTGVEFIVGLGNEYLDRMQDPAKAEAWVKQN VQAHLPATKVTCIFVGNEVLTFNDTTLSDNLLPAMQSVHTALVNLGLDKQVTVTTAHS LAILETSYPPSAGAFREDLIDCLSETLSFHQKTGSPFLINAYPYFAYKGNPKQVSLDF VLFQPNQGVIDQATNLHYDNMLYAQIDAVYSALASLGYKKLAVHISETGWPSKGDEDE AGATPDNAKKYNGNLIKLMSKKTGTPMRPNSDLNIYVFALFNENMKPGPTSERNYGLF KPDGTPVYPLGISTNDVVGSNTTAGGSIGNAVTQPSSPTSSSTGYLSISSATERYQFI GHVLLPASFLLIKTLV" CDS join(28758566..28758617,28758716..28759819, 28759855..28759862) /locus_tag="TCM_015614" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30068.m002597; paralog of Thecc1EG041403t2" /codon_start=1 /product="Glucan endo-1,3-beta-glucosidase 11 isoform 4" /protein_id="EOY23847.1" /db_xref="TAIR:AT1G32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L868" /translation="MGFPRFFCYASIILSISAYLFPIMVNSIGINYGQIANNLPSPED VVPLVKSIGATKVKLYDADPGVLSAFANTGVEFIVGLGNEYLDRMQDPAKAEAWVKQN VQAHLPATKVTCIFVGNEVLTFNDTTLSDNLLPAMQSVHTALVNLGLDKQVTVTTAHS LAILETSYPPSAGAFREDLIDCLSETLSFHQKTGSPFLINAYPYFAYKGNPKQVSLDF VLFQPNQGVIDQATNLHYDNMLYAQIDAVYSALASLGYKKLAVHISETGWPSKGDEDE AGATPDNAKKYNGNLIKLMSKKTGTPMRPNSDLNIYVFALFNENMKPGPTSERNYGLF KPDGTPVYPLGISTNDVVGSNTTAGGSIGNAVTQPSSPTSSSTGYLSISSANF" gene complement(28760099..28768019) /locus_tag="TCM_015615" /note="dbxref CacaoGD:Thecc1EG015615" mRNA complement(join(28760099..28760203,28760498..28761605, 28761754..28762024,28762131..28762667,28763258..28763406, 28763501..28763758,28764179..28764349,28764900..28765040, 28765164..28765559,28765641..28765736,28765866..28765925, 28766164..28766308,28766713..28766973,28767158..28767327, 28767428..28767618)) /locus_tag="TCM_015615" /product="Ubiquitin-specific protease 9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019677001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044589t2" /inference="similar to AA sequence:Phytozome:GSVIVT01019677001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc132t28; alternateUTRof:Thecc1EG015615t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc328t32; inference alignment:Newbler:10:TSA:cgbaP2_g18205t00001" mRNA complement(join(28760503..28761605,28761754..28762024, 28762131..28762667,28763258..28763406,28763501..28763758, 28764179..28764349,28764900..28765040,28765164..28765559, 28765641..28765736,28765866..28765925,28766164..28766308, 28766713..28766973,28767158..28767327,28767428..28767618)) /locus_tag="TCM_015615" /product="Ubiquitin-specific protease 9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019677001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044589t2" /inference="similar to AA sequence:Phytozome:GSVIVT01019677001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc328t28; alternateUTRof:Thecc1EG015615t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc328t32; inference alignment:Newbler:10:TSA:cgbaP2_g18205t00001" mRNA complement(join(28760769..28761605,28761754..28762024, 28762131..28762667,28763258..28763406,28763501..28763758, 28764179..28764349,28764900..28765040,28765164..28765559, 28765641..28765736,28765866..28765925,28766164..28766308, 28766713..28766973,28767158..28767327,28767428..28767868, 28767881..28768019)) /locus_tag="TCM_015615" /product="Ubiquitin-specific protease 9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019677001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044589t2" /inference="similar to AA sequence:Phytozome:GSVIVT01019677001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc328t32" mRNA complement(join(28761052..28761605,28761754..28762024, 28762131..28762667,28763258..28763406,28763501..28763758, 28764179..28764349,28764900..28765040,28765164..28765559, 28765641..28765736,28765866..28765925,28766164..28766308, 28766713..28766973,28767158..28767327,28767428..28767618)) /locus_tag="TCM_015615" /product="Ubiquitin-specific protease 9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019677001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044589t2" /inference="similar to AA sequence:Phytozome:GSVIVT01019677001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc328t32; alternateUTRof:Thecc1EG015615t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc328t32; inference alignment:Newbler:10:TSA:cgbaP2_g18205t00001" CDS complement(join(28761441..28761605,28761754..28762024, 28762131..28762667,28763258..28763406,28763501..28763758, 28764179..28764349,28764900..28765040,28765164..28765559, 28765641..28765736,28765866..28765925,28766164..28766308, 28766713..28766973,28767158..28767309)) /locus_tag="TCM_015615" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG044589t2" /codon_start=1 /product="Ubiquitin-specific protease 9 isoform 1" /protein_id="EOY23850.1" /db_xref="Phytozome:GSVIVT01019677001" /db_xref="TAIR:AT4G10570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSB5" /translation="MTIPDSGFMMENGASCLPCTPEEEKKIVNDLRNESERNLKEGNL YFVISSRWFRRWERYVGMDADENVIGNQSSDSRHLNGASSVVAERPGPIDNSDIVQNG SDCDCKENEIQLRRMLMEGQDYVLVPQGVWEKLHEWYKGGPALPRKMILQGVYHRKFD VEVYPLRLKLIDSRDESQSIIWISRKASVAVLFQKVCALRGIEQDKARIWDYFNKQKH GQLFVSNKSVEESNLQMDQDILLEQVDGHHSSRFGMDSTGNELALVSLEPSRSSLTIA GGPTMSNGHSSGYRSNLYPGSSLSSGLNDIDDGFDAYNSVRKGEKGGLAGLQNLGNTC FMNSALQCLVHTPPLVEYFLKDYSDEINTENPLGMHGELALAFGELLRKLWSSGRIAI APRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSDGRPD EEVAAECWRNHKARNDSVIVDVCQGQYKSTLVCPVCSKISITFDPFMYLSLPLPSTIT RAMTVTVFSGDGNGLPLPYTVSVLKNGFCKDLLLALGTACCLKSDENLLLAEVYENKI YRYLDTPLEPLISIKDDEHIVAFRIQKKGMGKTKLVIFHRWQEKSTSDYLKSGAEIFG TPLVTYLGEGQPSGADIETAVSKVLSPFKRMYSSAKAHIGKENGFLSDGLDEQCSSSD VQPVENGEREGTSSMDLSILLLLTDDRVMNFKAFKKDTLFESGQIIRVVLDWTEKEQE LYDASYLKDIPEVHKAGFTAKKTRQEAISLSSCLDAFLMEEPLGPDDMWYCPRCKEHR QAIKKLDLWMLPEIIVFHLKRFTYGRYLKNKIDTFVNFPIHNLDLSKYVMNKDGQTYV YELYAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVNESDIKTSAAYLLFYKR VRSEPKVEAGEASHSHSIS" CDS complement(join(28761441..28761605,28761754..28762024, 28762131..28762667,28763258..28763406,28763501..28763758, 28764179..28764349,28764900..28765040,28765164..28765559, 28765641..28765736,28765866..28765925,28766164..28766308, 28766713..28766973,28767158..28767309)) /locus_tag="TCM_015615" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG044589t2" /codon_start=1 /product="Ubiquitin-specific protease 9 isoform 1" /protein_id="EOY23851.1" /db_xref="Phytozome:GSVIVT01019677001" /db_xref="TAIR:AT4G10570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSB5" /translation="MTIPDSGFMMENGASCLPCTPEEEKKIVNDLRNESERNLKEGNL YFVISSRWFRRWERYVGMDADENVIGNQSSDSRHLNGASSVVAERPGPIDNSDIVQNG SDCDCKENEIQLRRMLMEGQDYVLVPQGVWEKLHEWYKGGPALPRKMILQGVYHRKFD VEVYPLRLKLIDSRDESQSIIWISRKASVAVLFQKVCALRGIEQDKARIWDYFNKQKH GQLFVSNKSVEESNLQMDQDILLEQVDGHHSSRFGMDSTGNELALVSLEPSRSSLTIA GGPTMSNGHSSGYRSNLYPGSSLSSGLNDIDDGFDAYNSVRKGEKGGLAGLQNLGNTC FMNSALQCLVHTPPLVEYFLKDYSDEINTENPLGMHGELALAFGELLRKLWSSGRIAI APRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSDGRPD EEVAAECWRNHKARNDSVIVDVCQGQYKSTLVCPVCSKISITFDPFMYLSLPLPSTIT RAMTVTVFSGDGNGLPLPYTVSVLKNGFCKDLLLALGTACCLKSDENLLLAEVYENKI YRYLDTPLEPLISIKDDEHIVAFRIQKKGMGKTKLVIFHRWQEKSTSDYLKSGAEIFG TPLVTYLGEGQPSGADIETAVSKVLSPFKRMYSSAKAHIGKENGFLSDGLDEQCSSSD VQPVENGEREGTSSMDLSILLLLTDDRVMNFKAFKKDTLFESGQIIRVVLDWTEKEQE LYDASYLKDIPEVHKAGFTAKKTRQEAISLSSCLDAFLMEEPLGPDDMWYCPRCKEHR QAIKKLDLWMLPEIIVFHLKRFTYGRYLKNKIDTFVNFPIHNLDLSKYVMNKDGQTYV YELYAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVNESDIKTSAAYLLFYKR VRSEPKVEAGEASHSHSIS" CDS complement(join(28761441..28761605,28761754..28762024, 28762131..28762667,28763258..28763406,28763501..28763758, 28764179..28764349,28764900..28765040,28765164..28765559, 28765641..28765736,28765866..28765925,28766164..28766308, 28766713..28766973,28767158..28767309)) /locus_tag="TCM_015615" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG044589t2" /codon_start=1 /product="Ubiquitin-specific protease 9 isoform 1" /protein_id="EOY23852.1" /db_xref="Phytozome:GSVIVT01019677001" /db_xref="TAIR:AT4G10570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSB5" /translation="MTIPDSGFMMENGASCLPCTPEEEKKIVNDLRNESERNLKEGNL YFVISSRWFRRWERYVGMDADENVIGNQSSDSRHLNGASSVVAERPGPIDNSDIVQNG SDCDCKENEIQLRRMLMEGQDYVLVPQGVWEKLHEWYKGGPALPRKMILQGVYHRKFD VEVYPLRLKLIDSRDESQSIIWISRKASVAVLFQKVCALRGIEQDKARIWDYFNKQKH GQLFVSNKSVEESNLQMDQDILLEQVDGHHSSRFGMDSTGNELALVSLEPSRSSLTIA GGPTMSNGHSSGYRSNLYPGSSLSSGLNDIDDGFDAYNSVRKGEKGGLAGLQNLGNTC FMNSALQCLVHTPPLVEYFLKDYSDEINTENPLGMHGELALAFGELLRKLWSSGRIAI APRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSDGRPD EEVAAECWRNHKARNDSVIVDVCQGQYKSTLVCPVCSKISITFDPFMYLSLPLPSTIT RAMTVTVFSGDGNGLPLPYTVSVLKNGFCKDLLLALGTACCLKSDENLLLAEVYENKI YRYLDTPLEPLISIKDDEHIVAFRIQKKGMGKTKLVIFHRWQEKSTSDYLKSGAEIFG TPLVTYLGEGQPSGADIETAVSKVLSPFKRMYSSAKAHIGKENGFLSDGLDEQCSSSD VQPVENGEREGTSSMDLSILLLLTDDRVMNFKAFKKDTLFESGQIIRVVLDWTEKEQE LYDASYLKDIPEVHKAGFTAKKTRQEAISLSSCLDAFLMEEPLGPDDMWYCPRCKEHR QAIKKLDLWMLPEIIVFHLKRFTYGRYLKNKIDTFVNFPIHNLDLSKYVMNKDGQTYV YELYAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVNESDIKTSAAYLLFYKR VRSEPKVEAGEASHSHSIS" CDS complement(join(28761441..28761605,28761754..28762024, 28762131..28762667,28763258..28763406,28763501..28763758, 28764179..28764349,28764900..28765040,28765164..28765559, 28765641..28765736,28765866..28765925,28766164..28766308, 28766713..28766973,28767158..28767309)) /locus_tag="TCM_015615" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG044589t2" /codon_start=1 /product="Ubiquitin-specific protease 9 isoform 1" /protein_id="EOY23853.1" /db_xref="Phytozome:GSVIVT01019677001" /db_xref="TAIR:AT4G10570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSB5" /translation="MTIPDSGFMMENGASCLPCTPEEEKKIVNDLRNESERNLKEGNL YFVISSRWFRRWERYVGMDADENVIGNQSSDSRHLNGASSVVAERPGPIDNSDIVQNG SDCDCKENEIQLRRMLMEGQDYVLVPQGVWEKLHEWYKGGPALPRKMILQGVYHRKFD VEVYPLRLKLIDSRDESQSIIWISRKASVAVLFQKVCALRGIEQDKARIWDYFNKQKH GQLFVSNKSVEESNLQMDQDILLEQVDGHHSSRFGMDSTGNELALVSLEPSRSSLTIA GGPTMSNGHSSGYRSNLYPGSSLSSGLNDIDDGFDAYNSVRKGEKGGLAGLQNLGNTC FMNSALQCLVHTPPLVEYFLKDYSDEINTENPLGMHGELALAFGELLRKLWSSGRIAI APRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSDGRPD EEVAAECWRNHKARNDSVIVDVCQGQYKSTLVCPVCSKISITFDPFMYLSLPLPSTIT RAMTVTVFSGDGNGLPLPYTVSVLKNGFCKDLLLALGTACCLKSDENLLLAEVYENKI YRYLDTPLEPLISIKDDEHIVAFRIQKKGMGKTKLVIFHRWQEKSTSDYLKSGAEIFG TPLVTYLGEGQPSGADIETAVSKVLSPFKRMYSSAKAHIGKENGFLSDGLDEQCSSSD VQPVENGEREGTSSMDLSILLLLTDDRVMNFKAFKKDTLFESGQIIRVVLDWTEKEQE LYDASYLKDIPEVHKAGFTAKKTRQEAISLSSCLDAFLMEEPLGPDDMWYCPRCKEHR QAIKKLDLWMLPEIIVFHLKRFTYGRYLKNKIDTFVNFPIHNLDLSKYVMNKDGQTYV YELYAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVNESDIKTSAAYLLFYKR VRSEPKVEAGEASHSHSIS" gene complement(28768067..28777415) /locus_tag="TCM_015616" /note="dbxref CacaoGD:Thecc1EG015616" mRNA complement(join(28768067..28768222,28768500..28769443, 28770189..28770311,28770449..28770519,28770637..28770952, 28771082..28771240,28771368..28772504,28773393..28773769, 28773996..28774864,28775019..28775325,28777146..28777415)) /locus_tag="TCM_015616" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15580.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s15580.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b015090t1a2; alternateUTRof:Thecc1EG015616t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8640t2" mRNA complement(join(28768067..28768222,28768500..28769443, 28770189..28770311,28770449..28770519,28770637..28770952, 28771082..28771240,28771368..28772504,28773393..28773769, 28773996..28775325,28777146..28777415)) /locus_tag="TCM_015616" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15580.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s15580.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8640t2" mRNA complement(join(28768624..28769443,28770189..28770311, 28770449..28770519,28770637..28771240,28771368..28772504, 28773393..28773769,28773996..28775283)) /locus_tag="TCM_015616" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15580.1" /inference="similar to AA sequence:ricco:30068.m002594" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc703t4; inference alignment:Newbler:10:TSA:cgbaB_g00943t00002; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8640t2" mRNA complement(join(28768624..28769443,28770189..28770311, 28770449..28770519,28770637..28770952,28771082..28771240, 28771368..28772504,28773393..28775283)) /locus_tag="TCM_015616" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15580.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019675001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc703t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8640t2; inference alignment:Newbler:10:TSA:cgbaB_g00943t00002" CDS complement(join(28769093..28769443,28770189..28770311, 28770449..28770519,28770637..28770952,28771082..28771240, 28771368..28772504,28773393..28773769,28773996..28774854)) /locus_tag="TCM_015616" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1" /protein_id="EOY23854.1" /db_xref="Phytozome:POPTR_0011s15580.1" /db_xref="TAIR:AT1G32810.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MAQ7" /translation="MKGRTHRADPHDDWGDGSWTVDCVCGVNFDDGEEMVKCDECGVW VHTRCSRYTKAEELFACDKCKSKSNRNDSEEKEVAQLLVELPTKTVRIESSYVGHVPP RRPFRLWTDIPMEERVHVQGVPGGEPGLFGGLSGVFTPELWKCTGYVPKKFNFQYREF PCWDEKKDDDNKNGMQNENENGNLVDNGAGVLFSLSKERVFGAPIYPMKDALKEGKKS EGEDLDGKRWQNGARKDRSVLQPVVIPSSKRKKDELGASKDRSAKKKSRSAAEKEAYE KKRAAQSHKTVFRPSSDAKQLEFYEDRGSKSFKMDVQSVKNKNLRDGVLQEPTSDGNV ALNHAIERPQNNLVAKERASEASTSSMSGHDCSIRFELKEEKVDHQIPAAMKSSPATE DVVALPLEHKDPGITPVIEEGDSMTIDKVDGGVEGSPSLQEHPVDDLASSALGAQGNK IVKDSNVCMPHVLIKPDIEVKKEMNYDDGSKVVLTAQSSPHDDTKDTGKSLHQTSETS QMNDVVGGSSQSSDGKEKVIVSEAVADCPSDKANEMSGDCSLLKRDLEGSEVPEPVQK SSSESKLVPGSAEELKLSGNVLTSEEQSIQHKTVVCVGKSSSTSSAAVNPMSSIPDNS KPTDTQNSNPNTKQRVISDNNASIKKDHAASDVPRDEDRHDLSRKTAKERPKSSFGSA SKVSHQSRISHASISRRTISESKDYVPSSFSKASSVQNTSVTSVSGEPAGSMQSHSAP HVQQNKTSASGFPQKGEKLNHSSTQPASKVTHPTSAHPFAPSNSPTLSDEELALLLHQ ELNSSPRVPRVPRVRHTGSFPQLASPTATSMLIKRTSSSGGKDHSVVSRRKNKDASKD ASRGSRELDDEAKRTDKALLSPDQRQDTGSAMDASVKRDDKNVLPAPTTTTNSGPSSS TEANDQTLSSIRSSPRNISDDDPGIVRGSAPRTLPGLINEIMSKGRRMAYEELCNAVL PHWPNLRKHNGERYAYSSHSQAVLDCLRNRQEWAQLVDRGPKTNSSRKRRKADAEESE DNEYSKGRTTKEVESKSLESQKEEFPKGKRKARKRRRLALQGRGIKDVQRRRKVDFSE DDAGPFSNSSEESMFSEDEIQGGGACPAGSEASASSDEIGTM" CDS complement(join(28769093..28769443,28770189..28770311, 28770449..28770519,28770637..28770952,28771082..28771240, 28771368..28772504,28773393..28773769,28773996..28774854)) /locus_tag="TCM_015616" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1" /protein_id="EOY23855.1" /db_xref="Phytozome:POPTR_0011s15580.1" /db_xref="TAIR:AT1G32810.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MAQ7" /translation="MKGRTHRADPHDDWGDGSWTVDCVCGVNFDDGEEMVKCDECGVW VHTRCSRYTKAEELFACDKCKSKSNRNDSEEKEVAQLLVELPTKTVRIESSYVGHVPP RRPFRLWTDIPMEERVHVQGVPGGEPGLFGGLSGVFTPELWKCTGYVPKKFNFQYREF PCWDEKKDDDNKNGMQNENENGNLVDNGAGVLFSLSKERVFGAPIYPMKDALKEGKKS EGEDLDGKRWQNGARKDRSVLQPVVIPSSKRKKDELGASKDRSAKKKSRSAAEKEAYE KKRAAQSHKTVFRPSSDAKQLEFYEDRGSKSFKMDVQSVKNKNLRDGVLQEPTSDGNV ALNHAIERPQNNLVAKERASEASTSSMSGHDCSIRFELKEEKVDHQIPAAMKSSPATE DVVALPLEHKDPGITPVIEEGDSMTIDKVDGGVEGSPSLQEHPVDDLASSALGAQGNK IVKDSNVCMPHVLIKPDIEVKKEMNYDDGSKVVLTAQSSPHDDTKDTGKSLHQTSETS QMNDVVGGSSQSSDGKEKVIVSEAVADCPSDKANEMSGDCSLLKRDLEGSEVPEPVQK SSSESKLVPGSAEELKLSGNVLTSEEQSIQHKTVVCVGKSSSTSSAAVNPMSSIPDNS KPTDTQNSNPNTKQRVISDNNASIKKDHAASDVPRDEDRHDLSRKTAKERPKSSFGSA SKVSHQSRISHASISRRTISESKDYVPSSFSKASSVQNTSVTSVSGEPAGSMQSHSAP HVQQNKTSASGFPQKGEKLNHSSTQPASKVTHPTSAHPFAPSNSPTLSDEELALLLHQ ELNSSPRVPRVPRVRHTGSFPQLASPTATSMLIKRTSSSGGKDHSVVSRRKNKDASKD ASRGSRELDDEAKRTDKALLSPDQRQDTGSAMDASVKRDDKNVLPAPTTTTNSGPSSS TEANDQTLSSIRSSPRNISDDDPGIVRGSAPRTLPGLINEIMSKGRRMAYEELCNAVL PHWPNLRKHNGERYAYSSHSQAVLDCLRNRQEWAQLVDRGPKTNSSRKRRKADAEESE DNEYSKGRTTKEVESKSLESQKEEFPKGKRKARKRRRLALQGRGIKDVQRRRKVDFSE DDAGPFSNSSEESMFSEDEIQGGGACPAGSEASASSDEIGTM" CDS complement(join(28769093..28769443,28770189..28770311, 28770449..28770519,28770637..28770952,28771082..28771240, 28771368..28772504,28773393..28773917)) /locus_tag="TCM_015616" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 4" /protein_id="EOY23857.1" /db_xref="Phytozome:GSVIVT01019675001" /db_xref="TAIR:AT1G32810.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MAQ7" /translation="MRTVVICQEHTFHIIEMNGNGESHLYQSWHMHVDSRFFCCFCVC FHSLLVFRPSSDAKQLEFYEDRGSKSFKMDVQSVKNKNLRDGVLQEPTSDGNVALNHA IERPQNNLVAKERASEASTSSMSGHDCSIRFELKEEKVDHQIPAAMKSSPATEDVVAL PLEHKDPGITPVIEEGDSMTIDKVDGGVEGSPSLQEHPVDDLASSALGAQGNKIVKDS NVCMPHVLIKPDIEVKKEMNYDDGSKVVLTAQSSPHDDTKDTGKSLHQTSETSQMNDV VGGSSQSSDGKEKVIVSEAVADCPSDKANEMSGDCSLLKRDLEGSEVPEPVQKSSSES KLVPGSAEELKLSGNVLTSEEQSIQHKTVVCVGKSSSTSSAAVNPMSSIPDNSKPTDT QNSNPNTKQRVISDNNASIKKDHAASDVPRDEDRHDLSRKTAKERPKSSFGSASKVSH QSRISHASISRRTISESKDYVPSSFSKASSVQNTSVTSVSGEPAGSMQSHSAPHVQQN KTSASGFPQKGEKLNHSSTQPASKVTHPTSAHPFAPSNSPTLSDEELALLLHQELNSS PRVPRVPRVRHTGSFPQLASPTATSMLIKRTSSSGGKDHSVVSRRKNKDASKDASRGS RELDDEAKRTDKALLSPDQRQDTGSAMDASVKRDDKNVLPAPTTTTNSGPSSSTEAND QTLSSIRSSPRNISDDDPGIVRGSAPRTLPGLINEIMSKGRRMAYEELCNAVLPHWPN LRKHNGERYAYSSHSQAVLDCLRNRQEWAQLVDRGPKTNSSRKRRKADAEESEDNEYS KGRTTKEVESKSLESQKEEFPKGKRKARKRRRLALQGRGIKDVQRRRKVDFSEDDAGP FSNSSEESMFSEDEIQGGGACPAGSEASASSDEIGTM" CDS complement(join(28771019..28771240,28771368..28772504, 28773393..28773769,28773996..28774854)) /locus_tag="TCM_015616" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30068.m002594" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 3" /protein_id="EOY23856.1" /db_xref="TAIR:AT1G32810.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MAQ7" /translation="MKGRTHRADPHDDWGDGSWTVDCVCGVNFDDGEEMVKCDECGVW VHTRCSRYTKAEELFACDKCKSKSNRNDSEEKEVAQLLVELPTKTVRIESSYVGHVPP RRPFRLWTDIPMEERVHVQGVPGGEPGLFGGLSGVFTPELWKCTGYVPKKFNFQYREF PCWDEKKDDDNKNGMQNENENGNLVDNGAGVLFSLSKERVFGAPIYPMKDALKEGKKS EGEDLDGKRWQNGARKDRSVLQPVVIPSSKRKKDELGASKDRSAKKKSRSAAEKEAYE KKRAAQSHKTVFRPSSDAKQLEFYEDRGSKSFKMDVQSVKNKNLRDGVLQEPTSDGNV ALNHAIERPQNNLVAKERASEASTSSMSGHDCSIRFELKEEKVDHQIPAAMKSSPATE DVVALPLEHKDPGITPVIEEGDSMTIDKVDGGVEGSPSLQEHPVDDLASSALGAQGNK IVKDSNVCMPHVLIKPDIEVKKEMNYDDGSKVVLTAQSSPHDDTKDTGKSLHQTSETS QMNDVVGGSSQSSDGKEKVIVSEAVADCPSDKANEMSGDCSLLKRDLEGSEVPEPVQK SSSESKLVPGSAEELKLSGNVLTSEEQSIQHKTVVCVGKSSSTSSAAVNPMSSIPDNS KPTDTQNSNPNTKQRVISDNNASIKKDHAASDVPRDEDRHDLSRKTAKERPKSSFGSA SKVSHQSRISHASISRRTISESKDYVPSSFSKASSVQNTSVTSVSGEPAGSMQSHSAP HVQQNKTSASGFPQKGEKLNHSSTQPASKVTHPTSAHPFAPSNSPTLSDEELALLLHQ ELNSSPRVPRVPRVRHTGSFPQLASPTATSMLIKRTSSSGGKDHSVVICALPYLTFCA NLHSCFKY" mobile_element complement(28775450..28775835) /note="source:scaffold_7_CACTA_0795 2851 3263" /mobile_element_type="transposon:TIR/CACTA" gene 28777214..28783425 /locus_tag="TCM_015617" /note="dbxref CacaoGD:Thecc1EG015617" mRNA join(28777214..28777686,28777992..28778421, 28778891..28778998,28779114..28779158,28779235..28779307, 28779411..28779523,28779642..28779701,28779803..28779850, 28779949..28780017,28782214..28782275,28782395..28783288) /locus_tag="TCM_015617" /product="CTC-interacting domain 11 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019674001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015502t4" /inference="similar to AA sequence:Phytozome:GSVIVT01019674001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9605t3" mRNA join(28777465..28777686,28777992..28778421, 28778891..28778998,28779114..28779161,28779235..28779307, 28779411..28779523,28779642..28779703,28779803..28779850, 28779949..28780017,28782214..28782275,28782395..28783050) /locus_tag="TCM_015617" /product="CTC-interacting domain 11 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019674001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015502t3" /inference="similar to AA sequence:Phytozome:GSVIVT01019674001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8858t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9605t3" mRNA join(28777635..28777686,28777992..28778421, 28778891..28778985,28779641..28779701,28779803..28779850, 28779949..28780017,28782214..28782275,28782395..28783425) /locus_tag="TCM_015617" /product="CTC-interacting domain 11 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019674001.2" /inference="similar to AA sequence:Phytozome:GSVIVT01019674001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc526t11; alternateUTRof:Thecc1EG015617t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9605t3" mRNA join(28777635..28777686,28778005..28778421, 28778891..28778985,28779641..28779701,28779803..28779850, 28779949..28780017,28782214..28782275,28782395..28783425) /locus_tag="TCM_015617" /product="CTC-interacting domain 11 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019674001.2" /inference="similar to AA sequence:Phytozome:GSVIVT01019674001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc526t3; alternateUTRof:Thecc1EG015617t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9605t3" mRNA join(28777665..28777778,28777992..28778421, 28778891..28778985,28779641..28779701,28779803..28779850, 28779949..28780017,28782214..28782275,28782395..28783425) /locus_tag="TCM_015617" /product="CTC-interacting domain 11 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019674001.2" /inference="similar to AA sequence:Phytozome:GSVIVT01019674001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc526t7_C1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9605t3" CDS join(28778008..28778421,28778891..28778998, 28779114..28779158,28779235..28779307,28779411..28779523, 28779642..28779701,28779803..28779850,28779949..28780017, 28782214..28782275,28782395..28782452) /locus_tag="TCM_015617" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015502t4" /codon_start=1 /product="CTC-interacting domain 11 isoform 1" /protein_id="EOY23858.1" /db_xref="Phytozome:GSVIVT01019674001" /db_xref="TAIR:AT1G32790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IEC7" /translation="MAVVENASNQDAAAAAVASNDQDQSKQNHVRSRIDPSLHQNDQG LYNKIGGPLHRSNGGDLQRSNGGGGGEVGDSFKRDMRELQELFSKLNPMAEEFVPHSL ANHGLNGGFYTDNSFLHDNNNITRNGHANGNGAGRRKKNFSQGKRRMNSRTSMAQREE IIRRTVYVSDIDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGARA ALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRNEDERQMCARTIYCTNIDKKVTQTD VKLFFETVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP SKTPVRPRAPRIPMH" CDS join(28778008..28778421,28778891..28778985, 28779641..28779701,28779803..28779850,28779949..28780017, 28782214..28782275,28782395..28782452) /locus_tag="TCM_015617" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="CTC-interacting domain 11 isoform 3" /protein_id="EOY23860.1" /db_xref="Phytozome:GSVIVT01019674001" /db_xref="TAIR:AT1G32790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IEC7" /translation="MAVVENASNQDAAAAAVASNDQDQSKQNHVRSRIDPSLHQNDQG LYNKIGGPLHRSNGGDLQRSNGGGGGEVGDSFKRDMRELQELFSKLNPMAEEFVPHSL ANHGLNGGFYTDNSFLHDNNNITRNGHANGNGAGRRKKNFSQGKRRMNSRTSMAQREE IIRRTVYVSENEDERQMCARTIYCTNIDKKVTQTDVKLFFETVCGEVYRLRLLGDYHH STRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRIPMH" CDS join(28778008..28778421,28778891..28778985, 28779641..28779701,28779803..28779850,28779949..28780017, 28782214..28782275,28782395..28782452) /locus_tag="TCM_015617" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="CTC-interacting domain 11 isoform 3" /protein_id="EOY23861.1" /db_xref="Phytozome:GSVIVT01019674001" /db_xref="TAIR:AT1G32790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IEC7" /translation="MAVVENASNQDAAAAAVASNDQDQSKQNHVRSRIDPSLHQNDQG LYNKIGGPLHRSNGGDLQRSNGGGGGEVGDSFKRDMRELQELFSKLNPMAEEFVPHSL ANHGLNGGFYTDNSFLHDNNNITRNGHANGNGAGRRKKNFSQGKRRMNSRTSMAQREE IIRRTVYVSENEDERQMCARTIYCTNIDKKVTQTDVKLFFETVCGEVYRLRLLGDYHH STRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRIPMH" CDS join(28778008..28778421,28778891..28778985, 28779641..28779701,28779803..28779850,28779949..28780017, 28782214..28782275,28782395..28782452) /locus_tag="TCM_015617" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="CTC-interacting domain 11 isoform 3" /protein_id="EOY23862.1" /db_xref="Phytozome:GSVIVT01019674001" /db_xref="TAIR:AT1G32790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IEC7" /translation="MAVVENASNQDAAAAAVASNDQDQSKQNHVRSRIDPSLHQNDQG LYNKIGGPLHRSNGGDLQRSNGGGGGEVGDSFKRDMRELQELFSKLNPMAEEFVPHSL ANHGLNGGFYTDNSFLHDNNNITRNGHANGNGAGRRKKNFSQGKRRMNSRTSMAQREE IIRRTVYVSENEDERQMCARTIYCTNIDKKVTQTDVKLFFETVCGEVYRLRLLGDYHH STRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRIPMH" CDS join(28778008..28778421,28778891..28778998, 28779114..28779161,28779235..28779307,28779411..28779523, 28779642..28779703,28779803..28779850,28779949..28779961) /locus_tag="TCM_015617" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015502t3" /codon_start=1 /product="CTC-interacting domain 11 isoform 2" /protein_id="EOY23859.1" /db_xref="Phytozome:GSVIVT01019674001" /db_xref="TAIR:AT1G32790.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IEC7" /translation="MAVVENASNQDAAAAAVASNDQDQSKQNHVRSRIDPSLHQNDQG LYNKIGGPLHRSNGGDLQRSNGGGGGEVGDSFKRDMRELQELFSKLNPMAEEFVPHSL ANHGLNGGFYTDNSFLHDNNNITRNGHANGNGAGRRKKNFSQGKRRMNSRTSMAQREE IIRRTVYVSDIDQQVTEEQLAGLFVSCGQVVVDCRICGDPNSVLRFAFIEFTDEEGAR AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRNEDERQMCARTIYCTNIDKKVLLK LMLNSFLKQSVGRYTA" gene complement(28783420..28786902) /locus_tag="TCM_015619" /note="dbxref CacaoGD:Thecc1EG015619" mRNA complement(join(28783420..28783878,28783971..28784132, 28784292..28784387,28784482..28784543,28784951..28785026, 28785467..28785549,28785644..28785972,28786110..28786159, 28786257..28786393,28786479..28786781)) /locus_tag="TCM_015619" /product="Alcohol dehydrogenase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019673001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001447t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019673001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07189t00001" mRNA complement(join(28783459..28783878,28783971..28784132, 28784292..28784387,28784482..28784543,28784951..28785026, 28785467..28785549,28785644..28785972,28786110..28786159, 28786257..28786384,28786479..28786902)) /locus_tag="TCM_015619" /product="Alcohol dehydrogenase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019673001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001447t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019673001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc728t2; inference alignment:Newbler:10:TSA:cgbaB_g07189t00001" CDS complement(join(28783768..28783878,28783971..28784132, 28784292..28784387,28784482..28784543,28784951..28785026, 28785467..28785549,28785644..28785972,28786110..28786159, 28786257..28786384,28786479..28786557)) /locus_tag="TCM_015619" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG001447t1" /codon_start=1 /product="Alcohol dehydrogenase, putative isoform 2" /protein_id="EOY23864.1" /db_xref="Phytozome:GSVIVT01019673001" /db_xref="TAIR:AT1G64710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYV6" /translation="MDVGYHKSFESSFESADTTGKVITCKAWGPGQPLVMEDVQVAPP QQMEVRVKILFTSICHTDLSAWKGENEAQRAYPRILGHEASGIVESVGEGVEDMKKGD HVIPIFQGQCGNCICCRNEKTNLCQRFGVNPLKSVMVNDGKTRFSTKDGNPIFHFLNT STFSEYTVLDSACVVKIDFEAPLETMSLLSCGVSTGVGAAWNVANLQPGSTVAIFGLG AVGLAVAEGARARGASKIIGVDINPNKFAKGKAVGITEFINPKDLGVPVHERIGAMTD GGVDYSFECAGNLEVLREAFLSTHTGWGLTVLLGIHPSPMLLPLHPMELFNGRQIIGS IFGGFKGKTQLPKFAKQCMCGTLNLDEFITHELPFEKINEAFQLLIDGKSLRCLLHL" CDS complement(join(28783768..28783878,28783971..28784132, 28784292..28784387,28784482..28784543,28784951..28785026, 28785467..28785549,28785644..28785972,28786110..28786159, 28786257..28786393,28786479..28786557)) /locus_tag="TCM_015619" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG001447t1" /codon_start=1 /product="Alcohol dehydrogenase, putative isoform 1" /protein_id="EOY23863.1" /db_xref="Phytozome:GSVIVT01019673001" /db_xref="TAIR:AT1G64710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYV6" /translation="MDVGYHKSFESSFESADTTGKVITCKAAVAWGPGQPLVMEDVQV APPQQMEVRVKILFTSICHTDLSAWKGENEAQRAYPRILGHEASGIVESVGEGVEDMK KGDHVIPIFQGQCGNCICCRNEKTNLCQRFGVNPLKSVMVNDGKTRFSTKDGNPIFHF LNTSTFSEYTVLDSACVVKIDFEAPLETMSLLSCGVSTGVGAAWNVANLQPGSTVAIF GLGAVGLAVAEGARARGASKIIGVDINPNKFAKGKAVGITEFINPKDLGVPVHERIGA MTDGGVDYSFECAGNLEVLREAFLSTHTGWGLTVLLGIHPSPMLLPLHPMELFNGRQI IGSIFGGFKGKTQLPKFAKQCMCGTLNLDEFITHELPFEKINEAFQLLIDGKSLRCLL HL" mRNA complement(join(28784108..28784132,28784292..28784543, 28784951..28785026,28785467..28785549,28785644..28785972, 28786110..28786159,28786257..28786393,28786479..28786902)) /locus_tag="TCM_015619" /product="GroES-like zinc-binding dehydrogenase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019673001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001447t1" /inference="similar to AA sequence:frave:gene01876" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc509t4; inference alignment:Newbler:10:TSA:cgbaB_g07189t00001" CDS complement(join(28784428..28784543,28784951..28785026, 28785467..28785549,28785644..28785972,28786110..28786159, 28786257..28786393,28786479..28786557)) /locus_tag="TCM_015619" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene01876; paralog of Thecc1EG001447t1" /codon_start=1 /product="GroES-like zinc-binding dehydrogenase family protein isoform 3" /protein_id="EOY23865.1" /db_xref="TAIR:AT1G64710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYV6" /translation="MDVGYHKSFESSFESADTTGKVITCKAAVAWGPGQPLVMEDVQV APPQQMEVRVKILFTSICHTDLSAWKGENEAQRAYPRILGHEASGIVESVGEGVEDMK KGDHVIPIFQGQCGNCICCRNEKTNLCQRFGVNPLKSVMVNDGKTRFSTKDGNPIFHF LNTSTFSEYTVLDSACVVKIDFEAPLETMSLLSCGVSTGVGAAWNVANLQPGSTVAIF GLGAVGLAVAEGARARGASKIIGVDINPNKFAKGKAVGITEFINPKDLGVPVHEVSEL QPKIELRTSCTQN" gene 28787064..28794628 /locus_tag="TCM_015620" /note="dbxref CacaoGD:Thecc1EG015620" mRNA join(28787064..28787168,28791327..28791679, 28793535..28794628) /locus_tag="TCM_015620" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15620.1" /inference="similar to AA sequence:frave:gene01880" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12881t00001" CDS join(28791387..28791679,28793535..28794270) /locus_tag="TCM_015620" /note="dbxref frave:gene01880" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23866.1" /db_xref="TAIR:AT1G64700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I2X8" /translation="MGNCLPSRDVSEGEVCSEEKAMIKPGKVSSPPETDSQSTTTDCK RHMGPAITSAYPQDSTNGGSKKIRLLVTKQELRELLSKRMSVEEMLAGVHREGRIEEA LKKNPTDDILSFPPELSLLLILLHISITRRRRKRRNTTLRMGNCLFGGLGEADGVIKV ITSSGGVMEFSAPITAGSITDEFPGHAIFRSHDLFWKPLFHHEELLPGKSYYLLPLNG KDTSGNSGQIVREGHVRSNSIPASLVAPYRMSCDYQGTLKRSHTDVFSRYNKPAGFWK VKLVISPEQLLEILSQEARTQELIESVRTVAKCGSGVSTSVGFSDQWSLSSSRNASSN KDGLLLDI" mobile_element 28795079..28795276 /note="source:INTACT383F_F354_scaffold_3-int 854 1074" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(28796861..28796912) /note="source:CACAO_PIF_E144_scaffold_10 5995 6046" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28804851..28805721 /note="source:CACAO_Again_on_S_E16_scaffold_1 18 846" /mobile_element_type="transposon:TIR/hAT" mobile_element 28805722..28806526 /note="source:CACAO_on_E6_scaffold_1 2416 3175" /mobile_element_type="transposon:TIR/hAT" mobile_element 28806472..28806534 /note="source:MITE_hAT_26 996 1055" /mobile_element_type="transposon:TIR/MITE" gene 28808471..28810638 /locus_tag="TCM_015621" /note="dbxref CacaoGD:Thecc1EG015621" mRNA join(28808471..28808804,28808916..28809187, 28809380..28810638) /locus_tag="TCM_015621" /product="NAC domain-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:30068.m002591" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005047t1" /inference="similar to AA sequence:ricco:30068.m002591" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6067t1" CDS join(28808621..28808804,28808916..28809187, 28809380..28810159) /locus_tag="TCM_015621" /note="dbxref ricco:30068.m002591; paralog of Thecc1EG005047t1" /codon_start=1 /product="NAC domain-containing protein, putative" /protein_id="EOY23867.1" /db_xref="TAIR:AT2G46770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYV5" /translation="MSEDMNLSINGQSQVPPGFRFHPTEEELLHYYLRKKVAYEKIDL DVIREVDLNKLEPWDIQEKCKIGSTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKAT GRDKIIYSGFRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTHDSNGSNSIGDS VPEDGWVVCRVFRKKNYQKTLESPKSSSATSLDSKTQMLCSGNDGVLDQILLYMGRTC KMENDSLSNMNIPNANNSNNNLRMLVANNTGIGDGLHERFMHLPRLESPTLPSLPMGS SPFDQERSFKSCYQSIDDMLTETEPSSINQGGGACDTGSVQNNNESKNGVNDWVTLER LVASQLNGHVETSKQLSCFSDPNAVFSLCHDDDIQLSHINLHRSNQNSEVYSNENDLW SLTKSSSPSSSDPLCHLSV" mobile_element 28812712..28812763 /note="source:INTACT82F_F344_scaffold_2-int 8843 8894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28812722..28812784) /note="source:CACAO_M_E11054_F12_scaffold_2 8755 8821" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(28814546..28816521) /locus_tag="TCM_015622" /note="dbxref CacaoGD:Thecc1EG015622" mRNA complement(join(28814546..28815582,28815680..28815784, 28815896..28816087,28816477..28816521)) /locus_tag="TCM_015622" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.52 coverage" CDS complement(join(28815509..28815582,28815680..28815784, 28815896..28816028)) /locus_tag="TCM_015622" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23868.1" /translation="MMEHQLLYGSTGTFPIIVLYFQPKVFLLTPSFAVMVSHHHLGTP CKISSFAVTTIICSFALKSSIRLPYTTPPILSGVVVGLPGGYRLQSEPTHLGPQLPEK V" gene complement(28817015..28818516) /locus_tag="TCM_015623" /note="dbxref CacaoGD:Thecc1EG015623" mRNA complement(28817015..28818516) /locus_tag="TCM_015623" /product="Glutaredoxin family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene01882" /inference="similar to AA sequence:ricco:30068.m002590" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9569t1" CDS complement(28817323..28818396) /locus_tag="TCM_015623" /note="dbxref ricco:30068.m002590" /codon_start=1 /product="Glutaredoxin family protein, putative" /protein_id="EOY23869.1" /db_xref="TAIR:AT4G10630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSB9" /translation="MGCVSSNLLNQEDEFTQLGSSALGHHIVSLTSTTYGLLTLDPPP QSTTTPPTPPPPFTLGSTFNESKSLWSEPRPVPIRPEVINSWELMSGLDADSFRFPTI PNKENSNPNFSKNESVSKPPFSRSSLLDKFQADSFAFPNTALPEKENANPNLNRNGTI SKPPLSRSSLLEKFYSGNDAVLKPSALDKFEQICPPNGENRVVIYTTTLRGIRKTFED CNAIRSAIESYGIVVCERDISMDRGFKEELRELMKGKERESTNQTTPPRVFIKGRYIG GAEEVMRIVDEGWFEDLLKGLPKKRAGEVCDGCGDVKFLPCFRCNGSCKVAVVVKEEG SRTVVVRCTECNENGLVHCPICS" gene 28819916..28823234 /locus_tag="TCM_015624" /note="dbxref CacaoGD:Thecc1EG015624" mRNA join(28819916..28820613,28820734..28821030, 28821126..28821374,28821474..28821611,28821717..28822483, 28822707..28823234) /locus_tag="TCM_015624" /product="Iq-domain 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002589" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005048t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s45220.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06192t00001" CDS join(28820488..28820613,28820734..28821030, 28821126..28821374,28821474..28821611,28821717..28822483, 28822707..28822710) /locus_tag="TCM_015624" /note="paralog of Thecc1EG005048t2" /codon_start=1 /product="Iq-domain 1" /protein_id="EOY23870.1" /db_xref="Phytozome:POPTR_0001s45220.1" /db_xref="TAIR:AT1G01110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0T4" /translation="MGKKTATSWLSIVKKALSSPAKDNEKKSSRRRDECGQEEEEKKR EKRRWLFRRPSNINHVQQCEAKTTTEATRSTTVPVNPALDIADQRHAIAVAAAAEAAV ATAQAAVEIVRLSSKPSNYTNVTEHYAAIVIQTAFRRYLARRALRALKGLVKLQALVR GHNVRRQAKLALKCMQSLVQVQDRVLDQQRARLSHEGYRNSMFAETNALWESRYLQDI RSRKSMSRDMSCTTDEWDDRPQTSEEIEAILQNKKQAALKREKALAYAFSNQVWRSGR NPSAGDEKELEERTKWLDRWMATKRWESNSRVSTDIRDSIKTVEIDTYKPQSYSSPTI RKSQYQNHKQFPTSHSVASPLDREHHNFSLNQFPATPSPCKTKPLQVRSASPRCLKEE KCYYSAANTPSLASTYCTHNGISRYGNAAATVPNYMATTESAKAKARSQSTPKQRPST PERERGGSLAKKRLSYPAPESHVGIGRSSFSQNLRSPSFKSAFEGHYGMEKESFFSSY HTESFGGEISPCSTTELS" gene complement(28823329..28829618) /locus_tag="TCM_015625" /note="dbxref CacaoGD:Thecc1EG015625" mRNA complement(join(28823329..28824445,28824670..28824979, 28825066..28825218,28825331..28826056)) /locus_tag="TCM_015625" /product="Growth-regulating factor 8, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11480.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11480.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1226t2; alternateUTRof:Thecc1EG015625t1; inference alignment:Newbler:10:TSA:cgbaB_g05584t00001" mRNA complement(join(28823404..28824445,28824670..28824979, 28825066..28825206,28825331..28825734,28825809..28825960)) /locus_tag="TCM_015625" /product="Growth-regulating factor 8, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11480.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11480.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8697t1; inference alignment:Newbler:10:TSA:cgbaB_g05584t00001" mRNA complement(join(28823493..28824445,28824670..28824979, 28825066..28825218,28825331..28825734,28825809..28825834)) /locus_tag="TCM_015625" /product="Growth-regulating factor 8, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11480.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11480.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05584t00001; alternateUTRof:Thecc1EG015625t1; inference alignment:Newbler:10:TSA:cgbaB_g05584t00001" mRNA complement(join(28823500..28824445,28824670..28824979, 28825066..28825218,28825331..28825734,28829199..28829618)) /locus_tag="TCM_015625" /product="Growth-regulating factor 8, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11480.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11480.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05584t00001" CDS complement(join(28823812..28824445,28824670..28824979, 28825066..28825206,28825331..28825709)) /locus_tag="TCM_015625" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Growth-regulating factor 8, putative isoform 3" /protein_id="EOY23873.1" /db_xref="Phytozome:POPTR_0001s11480.1" /db_xref="TAIR:AT4G24150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK64" /translation="MGTRNNAFMGTEKGFGRDHCDVGLALRMQQVEESCPNKSFMPMP HHSSHHQLSSSSSSCCGDGFDGGACGGGPIVCNTSNQVPCTGDIYDVVGAASASASAA AAGVFKSLHHHPFSADPSFPNNCSAPVNARAPFTAAQWQELERQTMIYKYMTASEPVP PDLPIPLTRNPSNVIKGSLELGFSGNSSDPEPWRCRRTDGKKWRCSRDVAPDQKYCER HSHKSRPRSRKPVELPNHSVNNNDHKPHTHNMASDKQPHQNPHFITDAHLLTSSFDQP RCLEWFIKGETTVPFAGNSNPEWQQFQTQGTKYGGNVSEYQQQYYKDHRLNLQAQHLN EQFSPDFASLGGASNLNQTHSQETRSFIDAWSTAEREVAELDGFGSKRPLCSNEKLPL SSLTLSMSGGSGNNQEEDDENSQMGAFDIMGLAVENVRALRPQMANPVSWMGSPPGGP FYPLCALVLQVVKAQVRVTAARAHEKTGEAQLILTYG" CDS complement(join(28823812..28824445,28824670..28824979, 28825066..28825218,28825331..28825709)) /locus_tag="TCM_015625" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Growth-regulating factor 8, putative isoform 1" /protein_id="EOY23871.1" /db_xref="Phytozome:POPTR_0001s11480.1" /db_xref="TAIR:AT4G24150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK64" /translation="MGTRNNAFMGTEKGFGRDHCDVGLALRMQQVEESCPNKSFMPMP HHSSHHQLSSSSSSCCGDGFDGGACGGGPIVCNTSNQVPCTGDIYDVVGAASASASAA AAGVFKSLHHHPFSADPSFPNNCSGEMAAPVNARAPFTAAQWQELERQTMIYKYMTAS EPVPPDLPIPLTRNPSNVIKGSLELGFSGNSSDPEPWRCRRTDGKKWRCSRDVAPDQK YCERHSHKSRPRSRKPVELPNHSVNNNDHKPHTHNMASDKQPHQNPHFITDAHLLTSS FDQPRCLEWFIKGETTVPFAGNSNPEWQQFQTQGTKYGGNVSEYQQQYYKDHRLNLQA QHLNEQFSPDFASLGGASNLNQTHSQETRSFIDAWSTAEREVAELDGFGSKRPLCSNE KLPLSSLTLSMSGGSGNNQEEDDENSQMGAFDIMGLAVENVRALRPQMANPVSWMGSP PGGPFYPLCALVLQVVKAQVRVTAARAHEKTGEAQLILTYG" CDS complement(join(28823812..28824445,28824670..28824979, 28825066..28825218,28825331..28825709)) /locus_tag="TCM_015625" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Growth-regulating factor 8, putative isoform 1" /protein_id="EOY23872.1" /db_xref="Phytozome:POPTR_0001s11480.1" /db_xref="TAIR:AT4G24150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK64" /translation="MGTRNNAFMGTEKGFGRDHCDVGLALRMQQVEESCPNKSFMPMP HHSSHHQLSSSSSSCCGDGFDGGACGGGPIVCNTSNQVPCTGDIYDVVGAASASASAA AAGVFKSLHHHPFSADPSFPNNCSGEMAAPVNARAPFTAAQWQELERQTMIYKYMTAS EPVPPDLPIPLTRNPSNVIKGSLELGFSGNSSDPEPWRCRRTDGKKWRCSRDVAPDQK YCERHSHKSRPRSRKPVELPNHSVNNNDHKPHTHNMASDKQPHQNPHFITDAHLLTSS FDQPRCLEWFIKGETTVPFAGNSNPEWQQFQTQGTKYGGNVSEYQQQYYKDHRLNLQA QHLNEQFSPDFASLGGASNLNQTHSQETRSFIDAWSTAEREVAELDGFGSKRPLCSNE KLPLSSLTLSMSGGSGNNQEEDDENSQMGAFDIMGLAVENVRALRPQMANPVSWMGSP PGGPFYPLCALVLQVVKAQVRVTAARAHEKTGEAQLILTYG" CDS complement(join(28823812..28824445,28824670..28824979, 28825066..28825218,28825331..28825709)) /locus_tag="TCM_015625" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Growth-regulating factor 8, putative isoform 1" /protein_id="EOY23874.1" /db_xref="Phytozome:POPTR_0001s11480.1" /db_xref="TAIR:AT4G24150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK64" /translation="MGTRNNAFMGTEKGFGRDHCDVGLALRMQQVEESCPNKSFMPMP HHSSHHQLSSSSSSCCGDGFDGGACGGGPIVCNTSNQVPCTGDIYDVVGAASASASAA AAGVFKSLHHHPFSADPSFPNNCSGEMAAPVNARAPFTAAQWQELERQTMIYKYMTAS EPVPPDLPIPLTRNPSNVIKGSLELGFSGNSSDPEPWRCRRTDGKKWRCSRDVAPDQK YCERHSHKSRPRSRKPVELPNHSVNNNDHKPHTHNMASDKQPHQNPHFITDAHLLTSS FDQPRCLEWFIKGETTVPFAGNSNPEWQQFQTQGTKYGGNVSEYQQQYYKDHRLNLQA QHLNEQFSPDFASLGGASNLNQTHSQETRSFIDAWSTAEREVAELDGFGSKRPLCSNE KLPLSSLTLSMSGGSGNNQEEDDENSQMGAFDIMGLAVENVRALRPQMANPVSWMGSP PGGPFYPLCALVLQVVKAQVRVTAARAHEKTGEAQLILTYG" gene complement(28829719..28831250) /locus_tag="TCM_015626" /note="dbxref CacaoGD:Thecc1EG015626" mRNA complement(28829719..28831250) /locus_tag="TCM_015626" /product="Branchless trichome" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11490.1" /inference="similar to AA sequence:ricco:30068.m002587" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8699t1" CDS complement(28830076..28831140) /locus_tag="TCM_015626" /note="dbxref ricco:30068.m002587" /codon_start=1 /product="Branchless trichome" /protein_id="EOY23875.1" /db_xref="TAIR:AT1G64690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK63" /translation="MKGEDMEEAMMMISSPDNPCNVTIPQEHITTTTCPSWKLYENPF YYSHHHHHHHHHHQQQQLCQSSKHLRQVNLPLSARKIAASFWDLTFFKPVMESELDIA RAQIIELKAEVEYERKARKKVESLNKRLAKELAEERRGREALERVCEELAREISMHKA EIDRMKKEVEEERKMLRMAEVLREERVQMKLAEAKILFEEKLLELEETKRAQPHTSIS RIEQKNKEFKTPALSANLSGKFARLVFSEKSCDYSNIGVDSRESTRFALSEKSSSCYD NISSAVSSSMAIQRKASPEPENPHIKRGIKGFVEFPRVVRAIGSKSRHWGTKLECQKA QLRILLKQKSPIGSNSLIMS" gene complement(28837173..28839168) /locus_tag="TCM_015628" /note="dbxref CacaoGD:Thecc1EG015628" mRNA complement(28837173..28839168) /locus_tag="TCM_015628" /product="Lung seven transmembrane receptor family protein" /inference="alignment:exonerate- protein:2:ricco:30068.m002586" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022030t1" /inference="similar to AA sequence:ricco:30068.m002586" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8703t1" CDS complement(28837563..28838873) /locus_tag="TCM_015628" /note="dbxref ricco:30068.m002586; paralog of Thecc1EG022030t1" /codon_start=1 /product="Lung seven transmembrane receptor family protein" /protein_id="EOY23876.1" /db_xref="TAIR:AT5G42090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHX6" /translation="MAISRCLLSFLLISLFASFGFAEIRVTEIRSDGRPIIPFDEFGF THTGRLELNVSQIALSNPNPDLDLSKVGFFLCTRDAWMHVLQQLEDGEVACALNSDLV KVVHDFKSLNRISSFDTVYQENDADQYTLVFANCLSQIKVSMNVRSAMYNLDGKKNRR DYLSAGKTILPRVYFLLSLVYFTLAGIWIYVLYKKRLTVFRIHFFMLAVVILKAFNLV CEAEDKSYIKRTGSAHGWDVLFYIFSFLKGITLFTLIVLIGTGWSFLKPYLQDKEKKV LMIVIPLQVVANIAQVVIDETGPFGQDWITWKQVFLLVDVVCCCAVLFPIVWSIKNLR EAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVYALETITSYKYLWTSVVAGEL ATLAFYVFTGYKFKPEAHNPYFVIDDEEEEAAAEQLKLEDEFEL" gene complement(28839813..28842745) /locus_tag="TCM_015629" /note="dbxref CacaoGD:Thecc1EG015629" mRNA complement(join(28839813..28840851,28841008..28841119, 28841200..28841361,28841434..28841526,28841620..28841820, 28842181..28842390,28842482..28842745)) /locus_tag="TCM_015629" /product="Endoglucanase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11430.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004697t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11430.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8625t3" CDS complement(join(28840355..28840851,28841008..28841119, 28841200..28841361,28841434..28841526,28841620..28841820, 28842181..28842390,28842482..28842697)) /locus_tag="TCM_015629" /note="paralog of Thecc1EG004697t1" /codon_start=1 /product="Endoglucanase 1" /protein_id="EOY23877.1" /db_xref="Phytozome:POPTR_0001s11430.1" /db_xref="TAIR:AT1G02800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P05522" /translation="MAPAIFSLTVQIVCLTLFSLSLLCTAFTPHDYSDALEKSILFFE GQRSGRLPTNQRLKWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTMLAWS VIEFGSSMQNQIANAKAAIRWGTDYLLKAATATPDTLYVQVGDPNMDHKCWERPEDMD TPRNVYKVSTQNPGSDVAAETAAALAAASIVFKESDPSYSAKLLQTAKKVFDFADRHR GSYSDSLNSVVCPFYCSYSGYQDELLWGASWIHRASQDNSYLTYIQSNGHTMGSDNDD YSFSWDDKRAGTKVLLSKDFLEKSTEEFQLYKSHADNYICSLIPGTSGFQAQYTPGGL LYKASESNLQYVTTTSFLLLTYAKYLSANGGVATCGTSTVTAESLIAHAKKQVDYTLG DNPAKMSYMVGFGARYPQHVHHRGSSVPSIHAHPDRITCNDGFQYLYSSSPNPNVLVG AIVGGPDSKDNFADDRNNYQQSEPATYINAPFVGALAFFSGKATAN" gene 28843515..28844843 /locus_tag="TCM_015632" /note="dbxref CacaoGD:Thecc1EG015632" mRNA join(28843515..28843766,28843901..28844081, 28844671..28844843) /locus_tag="TCM_015632" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS join(28843625..28843766,28843901..28844055) /locus_tag="TCM_015632" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23878.1" /translation="MYVTRAFYCQKDKLIRWSSPNSSRLHGKCDSQDCMNVNRDFVIL GLSLSRGRYPSQEAIREKPKANYGLFSNFQWLKAISFPAFFACTTLGFCDIGRS" mobile_element complement(28844303..28844365) /note="source:scaffold_1_CACTA_0008 13962 14022" /mobile_element_type="transposon:TIR/CACTA" gene complement(28845205..28847604) /locus_tag="TCM_015633" /note="dbxref CacaoGD:Thecc1EG015633" mRNA complement(join(28845205..28845538,28845648..28845743, 28845848..28845954,28846166..28846227,28846556..28846648, 28847007..28847604)) /locus_tag="TCM_015633" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene01892" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400010388" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc234t2" mRNA complement(join(28845340..28845538,28845648..28845954, 28846166..28846227,28846556..28846648,28847007..28847393)) /locus_tag="TCM_015633" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene01892" /inference="similar to AA sequence:ricco:30068.m002584" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc234t7; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc234t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc391t3" CDS complement(join(28845489..28845538,28845648..28845743, 28845848..28845954,28846166..28846227,28846556..28846648, 28847007..28847384)) /locus_tag="TCM_015633" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23879.1" /db_xref="Phytozome:PGSC0003DMP400010388" /db_xref="TAIR:AT1G64680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGU7" /translation="MVALGLQVAHFTAPQQFSNRRHGNFSNFIRCGIAEPSGEPAPLG QKTKYNDGLFEKAFITLFARKMEKFATAPKAGEEAKKGWFVYDYESFVEVSQRVMQGR SRLQQQQVVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFNWLVGPSEVVE VEVNGVKQKSGVHIKKCRYLENSGCAGMCVNMCKIPTQDFFTNEFGLPLTMTPNFEDM SCEMIYGQVPPAFEEDPASKQPCFADICSMANPSSSVCPKLQA" CDS complement(join(28845729..28845954,28846166..28846227, 28846556..28846648,28847007..28847384)) /locus_tag="TCM_015633" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002584" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY23880.1" /db_xref="TAIR:AT1G64680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGU7" /translation="MVALGLQVAHFTAPQQFSNRRHGNFSNFIRCGIAEPSGEPAPLG QKTKYNDGLFEKAFITLFARKMEKFATAPKAGEEAKKGWFVYDYESFVEVSQRVMQGR SRLQQQQVVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFNWLVGPSEVVE VEVNGVKQKSGVHIKKCRYLENSGCAGMCVNMCKIPTQDFFTNEFGLPLTMTPSMFLR CCSCFTVYAPKRWFFWVILIWFINETLHPQILKT" mobile_element complement(28848488..28848918) /note="source:CACAO_PIF_E144_scaffold_10 1199 1635" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(28848887..28853260) /locus_tag="TCM_015634" /note="dbxref CacaoGD:Thecc1EG015634" mRNA complement(join(28848887..28848951,28850339..28850745, 28850882..28851140,28851467..28851712,28851791..28851921, 28852684..28853260)) /locus_tag="TCM_015634" /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30068.m002583" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000525t1" /inference="similar to AA sequence:ricco:30068.m002583" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8620t2" CDS complement(join(28850504..28850745,28850882..28851140, 28851467..28851712,28851791..28851921,28852684..28852951)) /locus_tag="TCM_015634" /note="dbxref ricco:30068.m002583; paralog of Thecc1EG000525t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /protein_id="EOY23881.1" /db_xref="TAIR:AT5G41890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ25" /translation="MYLKEKMKTLKTILNPVFFVILILLSSHVVPSFSFTSFVFGDSL VDAGNNDYLFTLSKADSPPYGIDFKPSGGQPTGRFTNGRTIADIVDQALGAKSFPPPY LAPNTQTEAILRGINYASGASGILDETGFFFIGRIPLGEQVKYFGQNRNYMVNAMGEN RTREFLKKAIFSLTIGSNDILNYVQPSIPFLGHDKLFPTTIFLDSMISNLTIQLKRLH ELGARKLLVVGVGPLGCIPFVRAFNLLPSGKCSAQVNALIQGYNEKLKELLNRLNQEM GPEAIFVFANSYDIFMKIIVNYHQYGFENAHEPCCGGYFPPFICFKSRNTKASTSAVC NDRSKYVFWDAYHPTEAANLIIAKELLDGDESSSSPINIRKLYNYNS" mobile_element complement(28854427..28854683) /note="source:scaffold_10_CACTA_0130 6232 6484" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28855983..28856028 /note="source:scaffold_5_CACTA_0607 11762 11806" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28857095..28857230) /note="source:scaffold_2_CACTA_0245 1655 1796" /mobile_element_type="transposon:TIR/CACTA" gene 28857265..28865590 /locus_tag="TCM_015635" /note="dbxref CacaoGD:Thecc1EG015635" mRNA join(28857265..28857406,28862130..28862849, 28862972..28863300,28863400..28863599,28864980..28865590) /locus_tag="TCM_015635" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019660001" /inference="similar to AA sequence:ricco:30068.m002582" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01168t00001_C2" mobile_element 28861969..28862032 /note="source:CACAO_M_E43428_F369_scaffold_5 1268 1331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28861970..28862039) /note="source:CACAO_M_E44848_F172_scaffold_6 1890 1959" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(28862273..28862849,28862972..28863300, 28863400..28863599,28864980..28865307) /locus_tag="TCM_015635" /note="dbxref ricco:30068.m002582" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY23882.1" /db_xref="TAIR:AT4G24140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22977" /translation="MDVMCKIRSVLTLIGGVLNKAVSFIVFCILDLVDFILCFVYKVI DFCIEAEWKPCYCSSAKEAITGSGKILVSEQGESKIVCLTPSKLQLEDISDTLYSRPS LVTEVSKLTVNELKKLKLDGTIIQSCEKIKKGTVRSTFTINSTIVEMLQGKMVGQQLH PIPRWSDCDCKLCNSWTSSSKDTLFVKAQGPKDKAREDVLFIHGFISSSAFWTETLFP NFSSTAKSTYRLLAVDLLGFGRSPKPTDSLYTLREHVDMIEKSVLEAYKVKSFHIVAH SLGCILALAIAVKHPGSVKSLTLLAPPYYPVPKGEPPTQYVMRKVAPRRVWPVMAFCA SIGCWYEHITRTVCLVICKNHRLWEFLTKLITRNRIRTFLLEGFFCHTHNAAWHTLHN IICGTASKLDRYLDAVRDRVKCDVTIFHGKDDEVIPLECSYDVQRRIPRARVKAVENK DHITIVVGRQEAFARELEEIWKRSSSD" gene complement(28870029..28879351) /locus_tag="TCM_015636" /note="dbxref CacaoGD:Thecc1EG015636" mRNA complement(join(28870029..28870814,28878522..28878663, 28879256..28879351)) /locus_tag="TCM_015636" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015640t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11400.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage" CDS complement(join(28870345..28870814,28878522..28878663, 28879256..28879264)) /locus_tag="TCM_015636" /note="paralog of Thecc1EG015640t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23883.1" /db_xref="Phytozome:POPTR_0001s11400.1" /translation="MESVLQGFKEPGCPIFWTTRRGGSGTPGVGGQNPPSRVVGGGWD GEGMAGHGQSIFALRCSSLKASLLSDAVAYVKELKSKVDELEAKLRVKSQKTKLNVIN VIDNQSKTTTFKSTRPSPNHEPKTMEVDVKNVGSETMIRVQCPDVNYPAARSMDALRH LELHVHHASISNVKELGRQDAVVRVPTGLISEEVLKTAILQRCRLN" mobile_element 28871450..28871682 /note="source:scaffold_9_CACTA_0946 17767 17975" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28871698..28871857 /note="source:scaffold_9_CACTA_0942 5206 5357" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28871754..28871815) /note="source:scaffold_5_CACTA_0580 5288 5349" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28871816..28871862 /note="source:CACAO_PIF_E119_scaffold_3 4553 4670" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28871992..28872732) /note="source:scaffold_5_CACTA_0607 5900 6664" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28872729..28873391 /note="source:scaffold_5_CACTA_0615 1570 2242" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28873707..28873820) /note="source:scaffold_2_CACTA_0243 14631 14736" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28873977..28874125) /note="source:CACAO_on_E22_A_scaffold_2 4874 5022" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28874019..28874910) /note="source:scaffold_4_CACTA_0506 2691 3554" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28875084..28875736 /note="source:CACAO_on_E373_scaffold_1 3 627" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28875707..28875911 /note="source:CACAO_on_E449_scaffold_2 717 894" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28878426..28878715 /note="source:CACAO_on_E459_scaffold_2 138 428" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28878716..28878769 /note="source:INTACT52F_F339_scaffold_1-int 10097 10460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28878870..28879692 /note="source:CACAO_on_E459_scaffold_2 1732 2549" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28880733..28880912) /note="source:CACAO_PIF_E54_scaffold_3 8839 9039" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 28881077..28882419 /locus_tag="TCM_015638" /note="dbxref CacaoGD:Thecc1EG015638" mRNA join(28881077..28881620,28881701..28882419) /locus_tag="TCM_015638" /product="Bromodomain-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030851t1" /inference="similar to AA sequence:ricco:30064.m000486" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc950t2" CDS join(28881213..28881620,28881701..28882180) /locus_tag="TCM_015638" /note="dbxref ricco:30064.m000486; paralog of Thecc1EG030851t1" /codon_start=1 /product="Bromodomain-containing protein, putative" /protein_id="EOY23884.1" /db_xref="TAIR:AT5G55040.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SV90" /translation="MARFAATLGPVAWKVASHRIEQALPTGCKFGRGWVGEYEPLPTP VLMLENRAPKESALFIKLQRAADARKDDATYETPVPSTGVRKDDVTYNTAVPAKPHPL NVPASEGKSSSFRPVSGQHQKEGHLCLQLLGQSLQVELNLPPTANKNNADLITEKKNS NKSETAASKSREMVSRNMSLARVVSSKQIENNVAVDGGLPNGKISSNCFNNRAMNPSS DGIPTQMAKAAAYYSHGQEQGLNDPVQFMRILAEKAQKQQNSSNQFPQLIFHLLCHLF HLYEEMIRAVLPLLVHGCL" gene complement(28886149..28889668) /locus_tag="TCM_015640" /note="dbxref CacaoGD:Thecc1EG015640" mRNA complement(join(28886149..28886469,28887671..28889668)) /locus_tag="TCM_015640" /product="Basic helix-loop-helix DNA-binding family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005064t1" /inference="similar to AA sequence:ricco:30068.m002581" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage" mobile_element complement(28887393..28887489) /note="source:CACAO_M_E44848_F172_scaffold_6 1908 1977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28887432..28887497) /note="source:scaffold_9_CACTA_0927 15063 15130" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28887617..28887702 /note="source:CACAO_M_S_E52577_F51_scaffold_5 1820 1900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28887719..28887771) /note="source:CACAO_M_E85180_F12_scaffold_10 9674 9727" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(28888188..28889609) /locus_tag="TCM_015640" /note="dbxref ricco:30068.m002581; paralog of Thecc1EG005064t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding family protein, putative" /protein_id="EOY23885.1" /db_xref="TAIR:AT1G32640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK72" /translation="MSSSSSSSLITFGQDASPTLQQRLQFIVQSRPEWWVYSIFWQAS RDAHGHLVLSWGDGYFRGTRNFSGESCNKLISQPKLVSNLERKRSNKEMQALFSEEMD LDRMVDVDVTDYEWYYTVSITRSFAIGDGILGRAFGSGSYIWLSGDEEFQLYECERVR DARMRGFQTLVCLSTSFGVVELGSSEMIKEDWGMVQLAKSIFDSEINCLGSKQPSNES QFQISTKSVPFLDFGMVSGDQKEWILEEKQQGEAKKETTGLGRSSSDSGPDSDGNFAS ADKEFNVRSKRGRKPGSGKDSPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASL LSDAVAYIKELRSKVEELEAKLRVQSQKSKLNAINVFDNQITTSTFENTRPSPSYGPK TIEVDVKIVGSEAMIRVQCPDVNYPAARLMDALRDLELHVHHASISNVKELVLQDVVV RVPTGFISDEVLRTAILQRCRLN" gene 28890605..28891911 /locus_tag="TCM_015641" /note="dbxref CacaoGD:Thecc1EG015641" mRNA join(28890605..28890712,28890929..28891048, 28891127..28891911) /locus_tag="TCM_015641" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.24 coverage" CDS join(28890934..28891048,28891127..28891323) /locus_tag="TCM_015641" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23886.1" /translation="MIKGIHTKPKEKSKVVLRSLHLLAEAAISADQSTQPRPSNNLSA EAPFFIDPSPTALPSVTNPLTGSGDGSSTGQRTRASSIGLSMAIDSDQRLRLTTLTEI C" gene complement(28896851..28906129) /locus_tag="TCM_015642" /note="dbxref CacaoGD:Thecc1EG015642" mRNA complement(join(28896851..28899015,28905544..28906129)) /locus_tag="TCM_015642" /product="Glyoxal oxidase-related protein" /inference="alignment:exonerate- protein:2:ricco:30068.m002580" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034166t1" /inference="similar to AA sequence:ricco:30068.m002580" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage" CDS complement(28897094..28898803) /locus_tag="TCM_015642" /note="dbxref ricco:30068.m002580; paralog of Thecc1EG034166t1" /codon_start=1 /product="Glyoxal oxidase-related protein" /protein_id="EOY23887.1" /db_xref="TAIR:AT1G19900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9S1" /translation="MLSNSTIFAMSKAAMEPKILVFLLLVSYSSVLFNLALGAQTYQG KWKLLKRSIGISAMHMALLPNERIVTFDRTDFGPSNITLPQGKCMKDLQSSDCFAHSV EFDPATRAVRPLTILSDTWCSSGALSQDGTLVQSGGYRLGEKVVRYFKPCMDCDWEED QNGLLSPRWYASNQILPDGKIIVVGGRYQFTYEFIPKASSSDQRLYQLPFLKETRYSP LVSNNLYPFLHLSTDGNLFVFANDRGILLDYVNNKVIRTYPVMPGGFSHNYPSTGSSV LLPLKLLSTDNENNTSTPDAEVLICGGTPPDSNEKANIGIFVPASRYCGRLIITAASP EWEMEEMPINRVMGDMIMLPTGDVLIINGAAKGSAGWGVARKPVLNPVLYRPADNPSS DKNTRFEVLSPSMIPRLYHSTAQLLSDGRVLVGGSNPNMNYNFSALYPTELSLEAFYP PYLSSTKPRPSILAVRPGLKLGYKQKVSLEFTLEGNVNQGDVYVTMVAPSFTTHSIAM NQRLLVLALDEGVKKTPSGNYLVKGYAPETAALAPPGYYQLFLVHEGIPSKGTWVHIK QSS" gene complement(28903824..28905530) /locus_tag="TCM_015644" /note="dbxref CacaoGD:Thecc1EG015644" mRNA complement(join(28903824..28903874,28904638..28905530)) /locus_tag="TCM_015644" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1315t6" CDS complement(28904743..28904967) /locus_tag="TCM_015644" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23888.1" /translation="MFFYLFSTLKMLTSRCFFASFIFFPFFFLNLLTLSEKLYISSAC FLCKKWWVSYWTIWSSVISALFCFYACFYL" mobile_element complement(28908316..28908448) /note="source:CACAO_Mariner_E220_scaffold_9 8980 9114" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 28911629..28912800 /locus_tag="TCM_015645" /note="dbxref CacaoGD:Thecc1EG015645" mRNA join(28911629..28912273,28912357..28912800) /locus_tag="TCM_015645" /product="Homeobox 7, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11380.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14700.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01340t00001" CDS join(28911893..28912273,28912357..28912692) /locus_tag="TCM_015645" /codon_start=1 /product="Homeobox 7, putative" /protein_id="EOY23889.1" /db_xref="Phytozome:POPTR_0003s14700.1" /db_xref="TAIR:AT2G46680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK74" /translation="MLARKEQHQAAATVKVEVGLSGLDLHDHPITNIKPSSKNKRRFS DEQIRSLEFMFESGSRPESQKKQLLANELGLQPRQIAIWFQNRRARSKSKQIERDYNI LKESYDALASSYESLKRENQSLRIQLQKLKGQLEMEHGNKTHEPNRTGNSGDGNSENK SVICDANEKITFLFEGYDHMISSDNNSRDAESRDEDRVVLDMMEATDGSLTSSEKWCG FESNCFLDESSCSSNWWEYW" gene complement(28913429..28915953) /locus_tag="TCM_015646" /note="dbxref CacaoGD:Thecc1EG015646" mRNA complement(join(28913429..28913598,28913865..28913962, 28914780..28914869,28914964..28915066,28915171..28915251, 28915362..28915628,28915780..28915855)) /locus_tag="TCM_015646" /product="Mediator complex, subunit Med10 isoform 1" /inference="alignment:exonerate- protein:2:ricco:27798.m000594" /inference="similar to AA sequence:ricco:27798.m000594" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03006t00002; inference alignment:Newbler:10:TSA:cgbaL_g03006t00002" mRNA complement(join(<28913569..28913598,28914780..28914869, 28914964..28915066,28915171..28915251,28915362..28915628, 28915780..28915953)) /locus_tag="TCM_015646" /product="Mediator complex, subunit Med10 isoform 4" /inference="similar to AA sequence:ricco:27798.m000594" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc654t3_C2" CDS complement(join(<28913569..28913598,28914780..28914869, 28914964..28915066,28915171..28915251,28915362..28915588)) /locus_tag="TCM_015646" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:27798.m000594" /codon_start=1 /product="Mediator complex, subunit Med10 isoform 4" /protein_id="EOY23893.1" /db_xref="TAIR:AT1G26665.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQY6" /translation="MDSSQSSTLGTGGSGGNGIVSSQTNDTRTATPNDDPKQNLTQVI NSIQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMAKLSEKCNIQVPMEVL NLIDDGKNPDEFTRDVLNSCIAKNQVTKGKTDAFKSLRKHLLEELEQTFPDEVESYRE IRASSAAIEAELSPFIW" CDS complement(join(28913891..28913962,28914780..28914869, 28914964..28915066,28915171..28915251,28915362..28915588)) /locus_tag="TCM_015646" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27798.m000594" /codon_start=1 /product="Mediator complex, subunit Med10 isoform 1" /protein_id="EOY23890.1" /db_xref="TAIR:AT1G26665.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQY6" /translation="MDSSQSSTLGTGGSGGNGIVSSQTNDTRTATPNDDPKQNLTQVI NSIQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMAKLSEKCNIQVPMEVL NLIDDGKNPDEFTRDVLNSCIAKNQVTKGKTDAFKSLRKHLLEELEQTFPDEVESYRE IRASSAAECKRLAQSQSMLPNGDVKVKTEL" mRNA complement(join(<28913934..28913986,28914780..28914869, 28914964..28915066,28915171..28915251,28915362..28915628, 28915780..28915953)) /locus_tag="TCM_015646" /product="Mediator complex, subunit Med10 isoform 3" /inference="alignment:exonerate- protein:2:ricco:27798.m000594" /inference="similar to AA sequence:ricco:27798.m000594" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc654t1_C2; inference alignment:Newbler:10:TSA:cgbaL_g03006t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc654t8_C2" mRNA complement(join(28913934..28913962,28914466..28914526, 28914780..28914869,28914964..28915066,28915171..28915251, 28915362..28915628,28915780..28915953)) /locus_tag="TCM_015646" /product="Mediator complex, subunit Med10 isoform 2" /inference="similar to AA sequence:ricco:27798.m000594" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc654t8_C2" CDS complement(join(<28913936..28913986,28914780..28914869, 28914964..28915066,28915171..28915251,28915362..28915588)) /locus_tag="TCM_015646" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:27798.m000594" /codon_start=1 /product="Mediator complex, subunit Med10 isoform 3" /protein_id="EOY23892.1" /db_xref="TAIR:AT1G26665.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQY6" /translation="MDSSQSSTLGTGGSGGNGIVSSQTNDTRTATPNDDPKQNLTQVI NSIQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMAKLSEKCNIQVPMEVL NLIDDGKNPDEFTRDVLNSCIAKNQVTKGKTDAFKSLRKHLLEELEQTFPDEVESYRE IRASSAALKALGTMQECKRLAQSQ" CDS complement(join(28913955..28913962,28914466..28914526, 28914780..28914869,28914964..28915066,28915171..28915251, 28915362..28915588)) /locus_tag="TCM_015646" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27798.m000594" /codon_start=1 /product="Mediator complex, subunit Med10 isoform 2" /protein_id="EOY23891.1" /db_xref="TAIR:AT1G26665.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQY6" /translation="MDSSQSSTLGTGGSGGNGIVSSQTNDTRTATPNDDPKQNLTQVI NSIQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMAKLSEKCNIQVPMEVL NLIDDGKNPDEFTRDVLNSCIAKNQVTKGKTDAFKSLRKHLLEELEQTFPDEVESYRE IRASSAACVFGFCLQVILMERAQSLRLGM" gene 28917387..28925019 /locus_tag="TCM_015648" /note="dbxref CacaoGD:Thecc1EG015648" mRNA join(28917387..28917541,28922305..28923812, 28924059..28925019) /locus_tag="TCM_015648" /product="Cytochrome P450 78A3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005079t1" /inference="similar to AA sequence:ricco:30068.m002578" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05503t00001" mobile_element 28918584..28918684 /note="source:CACAO_M_E22931_F20_scaffold_3 6657 6756" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(28922841..28923812,28924059..28924679) /locus_tag="TCM_015648" /note="dbxref ricco:30068.m002578; paralog of Thecc1EG005079t1" /codon_start=1 /product="Cytochrome P450 78A3" /protein_id="EOY23894.1" /db_xref="TAIR:AT2G46660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48927" /translation="MAKHSDCFWVLFLASKCQTFSSLDSILLLPFLCMAWLAMALCFW KCPGGPAWGKYWLRKRAASTKPNNIIPGPRGFPVLGSMDLMVNLAHRKLFAAAKSFGA KRLMAFSLGDTRVIITCNPDVAKEILNSSVFADRPVKESAYSLMFNRAIGFAPYGVYW RTLRRIAATHLFCPKQISSTEAQRLDIASQMVSVIAYRGGEFSVRDVLKKASLNNMMC SVFGIKYQLGSSNSETEELSQLVEEGYDLLGKLNWSDHLPWLAGLDLQKIRLRCSELV PKVNKFVNRIIQEHKHQTGKRNHDFVDVLLSLNGPDRLSDHDMIAVLWEMIFRGTDTV AVLIEWILARMVLHPEIQSKVQAELDQVVGRSRPLMESDIRSMVFLPAVVKEVLRLHP PGPLLSWARLAITDTAIDGYHVPAGTTAMVNMWAITRDPDVWADPLKFMPERFVSKDR ADVEFSVLGSDLRLAPFGSGRRSCPGKTLGLATVSFWVASLLHEFEWVQSDDNPVDLT ETLRLSCEMANPLKVKVHPRRR" gene complement(28928847..28932226) /locus_tag="TCM_015649" /note="dbxref CacaoGD:Thecc1EG015649" mRNA complement(join(28928847..28930339,28931157..28931558, 28931683..28932226)) /locus_tag="TCM_015649" /product="Methionine gamma-lyase" /inference="alignment:exonerate-protein:2:frave:gene01897" /inference="similar to AA sequence:Phytozome:POPTR_0001s11350.1" /note="quality class is strong-expresste, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02611t00001" CDS complement(join(28929762..28930339,28931157..28931558, 28931683..28932067)) /locus_tag="TCM_015649" /codon_start=1 /product="Methionine gamma-lyase" /protein_id="EOY23895.1" /db_xref="Phytozome:POPTR_0001s11350.1" /db_xref="TAIR:AT1G64660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGU9" /translation="MAETQSRGFVFSGKKRAAGADDFDGDDLFMSKKSMLPTLAPAWE NDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRH FNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCSSGGHVVASRTLYGGTHAL LTHFLPRACGITTTFVDVCDHEAVRNAIVGGRTKVLYFESMSNPTLTVANIPELSRIA HEKGTTVVVDNTFAPMVLSPARLGADVVVHSISKFISGGADVIAGAVCGPASLVNSMM DLHQGALMLLGPTMNAKVAFELSERIPHLGLRMKEHCRRALAFATRMKKLGLKVIYPG LEDHPQHKLLKSMANKEYGFGGLLCVDMESEERANRLMHHLQNYTQFGLMAVSLGYYE TLMSCSGSSTSSELNAEEKALAGISPGLVRMSIGYIGTLEQRWSQLEKALSRMQESTL FNKN" mobile_element 28932879..28933315 /note="source:scaffold_5_CACTA_0607 6898 7322" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28933671..28934022) /note="source:CACAO_M_E44088_F76_scaffold_5 5036 5435" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28933797..28934486 /note="source:scaffold_4_CACTA_0493 2100 2821" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28934032..28934660) /note="source:INTACT459_F220_scaffold_4-int 7387 8042" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(28935754..28936298) /note="source:INTACT459_F220_scaffold_4-int 6895 7418" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(28936291..28937727) /note="source:CACAO_M_S_E119572_F76_scaffold_9 2153 3606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28937718..28939275) /note="source:CACAO_M_S_E119572_F76_scaffold_9 251 1784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28939282..28939495) /note="source:CACAO_PIF_E119_scaffold_3 2310 2549" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28939347..28939539 /note="source:CACAO_M_E4368_F316_scaffold_2 5210 5405" /mobile_element_type="retrotransposon:LTR/Copia" gene 28940427..28945805 /locus_tag="TCM_015650" /note="dbxref CacaoGD:Thecc1EG015650" mRNA join(28940427..28940889,28943694..28944036, 28944213..28944287,28944502..28944545,28944807..28945805) /locus_tag="TCM_015650" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010352t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.48 coverage" mobile_element 28942643..28943358 /note="source:CACAO_hAT_E44_scaffold_1 1 708" /mobile_element_type="transposon:TIR/hAT" CDS join(28943812..28944036,28944213..28944287, 28944502..28944545,28944807..28944918) /locus_tag="TCM_015650" /note="paralog of Thecc1EG010352t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23896.1" /translation="MATSPKGMVKFNVDGALRENPGQEGIGGILREEGGKVLIQFSLS VGIIDANTAEILAIKKALQMVATSRWANTDCAGVERKDEFLWVFAEDGDDSMIYHEGC FDVFVICSSGWGRLVDEAKMSLKFEKCKQVMACGIHVAVYLRLRDSRAL" mobile_element complement(28945272..28945378) /note="source:INTACT296_F13_scaffold_9-int 13164 13257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28945283..28945369 /note="source:CACAO_M_S_E14849_F156_scaffold_2 711 797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28945300..28945396) /note="source:scaffold_1_CACTA_0011 7433 7530" /mobile_element_type="transposon:TIR/CACTA" gene complement(28945783..28952946) /locus_tag="TCM_015651" /note="dbxref CacaoGD:Thecc1EG015651" mRNA complement(join(28945783..28946565,28946657..28946866, 28947006..28947017,28947335..28947429,28948066..28948197, 28948465..28948900,28949876..28949929,28950678..28950772, 28950871..28950968,28951068..28951210,28951882..28952013, 28952159..28952287,28952387..28952946)) /locus_tag="TCM_015651" /product="Esterase/lipase/thioesterase family protein" /inference="alignment:exonerate-protein:2:frave:gene01897" /inference="similar to AA sequence:ricco:30068.m002576" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8679t2" CDS complement(join(28946515..28946565,28946657..28946866, 28947006..28947017,28947335..28947429,28948066..28948197, 28948465..28948900,28949876..28949929,28950678..28950772, 28950871..28950968,28951068..28951210,28951882..28952013, 28952159..28952287,28952387..28952773)) /locus_tag="TCM_015651" /note="dbxref ricco:30068.m002576" /codon_start=1 /product="Esterase/lipase/thioesterase family protein" /protein_id="EOY23897.1" /translation="MAKLSLGSTFSIPLSRHTRATVTARHVTTTAPTKITMPDHHPSL EVIGGARDRFLQALHTALRLPYNPFPLIAWNCHVETIFAAFFRSVPDVRLRRECLRVK DGGSVALDWVSGDQRRLSPDASILILLPGLTGGSQDSYVRHMLNKAKSKGWRVVVFNS RGCGGSPVTTPQFYSASFLGDTCEVVEHIGARYPDANLYAVGWSLGANILVRYLGQES HTCPLSGAVSLCNPFNLVIADEDFHKGFNNVYDKALARSLCKIFKKHALLFEDMEGEF NIPLAANAKSVRDFDEGITRVSFGFKSVDEYYSSSSSCDSIKHVNRPLLCIQAANDPI APSRGIPWEDIRKKERTRTVEEWSKPHKGEMKYNVDGAAQGCPGEVGIGGIMRDDEGN IKIVFSKAIGVDDASAAEVRAIREAFLTFTASKWVATHSLIIESDSKNAVKWTNNPSE APWRLRKWILHIERLKKEVRKWDIKHIYRETNQLADSLAKGVGDVVCICIEDADGSPL EGIPQFVYAQPRGSFLLQPPGARGRLRGNISPESIKDLISQIVLPCHNPIQGWLKTLY MMGCKENPNCMLIVTPKGGHLGWVAGAEAPLGAPWTDSVVMDFLEHLERGASKTTGFS CDLEAVRHSSEGLHHMECSRFFIFIPWLYHGRS" gene complement(28953346..28954258) /locus_tag="TCM_015652" /note="dbxref CacaoGD:Thecc1EG015652" mRNA complement(28953346..28954258) /locus_tag="TCM_015652" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019650001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026789t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019650001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc98t1_C2" CDS complement(28953594..28954064) /locus_tag="TCM_015652" /note="paralog of Thecc1EG026789t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23898.1" /db_xref="Phytozome:GSVIVT01019650001" /db_xref="TAIR:AT4G24130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GY31" /translation="MASNKSREDDERAGAEIVYGAEECYRHSIELLEELGFPKGVLPL QDLEECGRVRETGFVWMKQKAPYEHFFAGTNTRVSYATEVTSYVEKFKMKKMTGVKSK QVFLWVPITEMSIEDPASNKIYFKTPMGIGKSFPITAFMTDEEKHKYLEEKAKK" gene 28957880..28962603 /locus_tag="TCM_015653" /note="dbxref CacaoGD:Thecc1EG015653" mRNA join(28957880..28958652,28959600..28959735, 28959872..28959921,28960461..28960514,28960668..28962603) /locus_tag="TCM_015653" /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015482t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s11320.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b015125t1a3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc101t3" mRNA join(28957880..28958327,28959600..28959735, 28959872..28959921,28960461..28960514,28960668..28962603) /locus_tag="TCM_015653" /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015482t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14630.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9635t1" CDS join(28958005..28958327,28959600..28959735, 28959872..28959921,28960461..28960514,28960668..28961931) /locus_tag="TCM_015653" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015482t1" /codon_start=1 /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 1" /protein_id="EOY23899.1" /db_xref="Phytozome:POPTR_0003s14630.1" /db_xref="TAIR:AT5G41940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67YN2" /translation="MLSAFFRVTYQKNKQKQKSNRDLGLGITVISLDLVFLMLFFSSD DAAFGKWILFAEASTGTGGGGGGGGGGGGGFWSSYSAVSLSGIAIAVTAMAGIALAAT VVYSRRGSLKSPWSRRRRKHALLPKQWKNLFTPDGKLIDGGVKFLKKIRSGGVDPSIR AEVWPFLLGVYDINSSKEERDSIQSQNRKEYESLRKQCRQILKRTEKSCKLKETSGNS CNEDSEDFSQVLDSPGLEDVVSGRRSHSTEGGSTVVDDSDGPVYDQSRQTLLSSDSFL EGDGDKSVVTCEDASTGETESSDSDSFEEHENTPLLASEITEGNNIDEDDNDTSSPSK IEGRSKSHTDEDFATWQRIIRLDAVRANDEWIIYSPSQAAVLEIKAQRLAESVGLKDY DHLEPCRIFHAARLVAILEAYALHDPEIGYCQGMSDLLSPIISMVEDDSEAFWCFVGF MKRARHNFRLDEVGIRRQLNIVSKIIKCKDIHLYRHLEKLQAEDCFFVYRMVVVLFRR ELNFEQTLCLWEVMWADQAAIRAGIAKSAWGRLRLRAPPTDDLLLYAIAACVLQRRKL IIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVNLHDKI" CDS join(28958459..28958652,28959600..28959735, 28959872..28959921,28960461..28960514,28960668..28961931) /locus_tag="TCM_015653" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015482t2" /codon_start=1 /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 2" /protein_id="EOY23900.1" /db_xref="Phytozome:POPTR_0001s11320.1" /db_xref="TAIR:AT5G41940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67YN2" /translation="MLTEQKPLMRALRRSHTSSSPSSSSSPSNTSSSSSSSSSSWIHL RSVLLVVASSSSSSSPLPTDRGSLKSPWSRRRRKHALLPKQWKNLFTPDGKLIDGGVK FLKKIRSGGVDPSIRAEVWPFLLGVYDINSSKEERDSIQSQNRKEYESLRKQCRQILK RTEKSCKLKETSGNSCNEDSEDFSQVLDSPGLEDVVSGRRSHSTEGGSTVVDDSDGPV YDQSRQTLLSSDSFLEGDGDKSVVTCEDASTGETESSDSDSFEEHENTPLLASEITEG NNIDEDDNDTSSPSKIEGRSKSHTDEDFATWQRIIRLDAVRANDEWIIYSPSQAAVLE IKAQRLAESVGLKDYDHLEPCRIFHAARLVAILEAYALHDPEIGYCQGMSDLLSPIIS MVEDDSEAFWCFVGFMKRARHNFRLDEVGIRRQLNIVSKIIKCKDIHLYRHLEKLQAE DCFFVYRMVVVLFRRELNFEQTLCLWEVMWADQAAIRAGIAKSAWGRLRLRAPPTDDL LLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVNLHDKI" gene 28962809..28969932 /locus_tag="TCM_015655" /note="dbxref CacaoGD:Thecc1EG015655" mRNA join(28962809..28963290,28964033..28964155, 28964271..28964340,28964525..28964638,28965163..28965246, 28965626..28965676,28965792..28965821,28965957..28966019, 28966161..28966226,28966396..28966524,28966785..28966820, 28967603..28967820) /locus_tag="TCM_015655" /product="Tetratricopeptide repeat-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30068.m002570" /inference="similar to AA sequence:ricco:30068.m002570" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b015126t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc203t12" mRNA join(28962811..28963290,28964033..28964155, 28964271..28964340,28964525..28964638,28965163..28965246, 28965626..28965676,28965792..28965821,28965957..28966019, 28966161..28966226,28966396..28966524,28966785..28966820, 28968440..28968559,28969047..28969235,28969429..28969932) /locus_tag="TCM_015655" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002570" /inference="similar to AA sequence:ricco:30068.m002570" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc203t12" mRNA join(<28962922..28963290,28964033..28964155, 28964271..28964340,28964525..28964638,28965163..28965246, 28965626..28965676,28965792..28965821,28965957..28966019, 28966161..28966226,28966396..28966524,28966785..28966820, 28969047..>28969192) /locus_tag="TCM_015655" /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002570" /inference="similar to AA sequence:ricco:30068.m002570" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc327t6; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc203t12" CDS join(<28962923..28963290,28964033..28964155, 28964271..28964340,28964525..28964638,28965163..28965246, 28965626..28965676,28965792..28965821,28965957..28966019, 28966161..28966226,28966396..28966524,28966785..28966820, 28969047..>28969190) /locus_tag="TCM_015655" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002570" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /protein_id="EOY23902.1" /db_xref="TAIR:AT5G41950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHY8" /translation="LHRNHSFIAMSAMTEESELQNGFQAQSEPELESKVESQPEQQSE PETKPEEELKPEPVVTDADLKPEEDKEGSIQSNEVDKPASTDQIARPELGNDEGNRTF TMRELLSELKSEEDDAGSPYSQESTQQQTYQNNAAMELINSVTGADEEGRSRQRILIY AARRYATALERNPEDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATR LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWEQATKNYEKAVQLNWNSPQALNNWG LALQELSAIVPARAKQKIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG GSTNLKEVSPNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMVIRVEQKQISRSLS GRTADVANIDKRAIRVDIPDIVSVSACADLTLPP" CDS join(28962950..28963290,28964033..28964155, 28964271..28964340,28964525..28964638,28965163..28965246, 28965626..28965676,28965792..28965821,28965957..28966019, 28966161..28966226,28966396..28966524,28966785..28966820, 28968440..28968559,28969047..28969235,28969429..28969539) /locus_tag="TCM_015655" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002570" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY23901.1" /db_xref="TAIR:AT5G41950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHY8" /translation="MSAMTEESELQNGFQAQSEPELESKVESQPEQQSEPETKPEEEL KPEPVVTDADLKPEEDKEGSIQSNEVDKPASTDQIARPELGNDEGNRTFTMRELLSEL KSEEDDAGSPYSQESTQQQTYQNNAAMELINSVTGADEEGRSRQRILIYAARRYATAL ERNPEDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATRLCPTLHDAF YNWAIAISDRAKMRGRTKEAEELWEQATKNYEKAVQLNWNSPQALNNWGLALQELSAI VPARAKQKIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGSTNLKEVS PNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPLPHLKDGYLTAPPAGNTIAPH SDWKRTEFFLNHEALQQVIRVEQKQISRSLSGRTADVANIDKRAIRVDIPDIVSVSAC ADLTLPPGAGLCIDTTRGPVFLVADSWESLDGWLDAIRLVYTIYARGKTDVLAGIITA " CDS join(28962950..28963290,28964033..28964155, 28964271..28964340,28964525..28964638,28965163..28965246, 28965626..28965676,28965792..28965821,28965957..28966019, 28966161..28966226,28966396..28966524,28966785..28966820, 28967603..28967644) /locus_tag="TCM_015655" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30068.m002570" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 3" /protein_id="EOY23903.1" /db_xref="TAIR:AT5G41950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHY8" /translation="MSAMTEESELQNGFQAQSEPELESKVESQPEQQSEPETKPEEEL KPEPVVTDADLKPEEDKEGSIQSNEVDKPASTDQIARPELGNDEGNRTFTMRELLSEL KSEEDDAGSPYSQESTQQQTYQNNAAMELINSVTGADEEGRSRQRILIYAARRYATAL ERNPEDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATRLCPTLHDAF YNWAIAISDRAKMRGRTKEAEELWEQATKNYEKAVQLNWNSPQALNNWGLALQELSAI VPARAKQKIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGSTNLKEVS PNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMRAAIGWGGLDLDG" gene complement(28970052..28974279) /locus_tag="TCM_015656" /note="dbxref CacaoGD:Thecc1EG015656" mRNA complement(join(28970052..28971290,28971872..28971901, 28972017..28972151,28972234..28972328,28972699..28972871, 28972977..28973355,28973452..28973722,28973906..28974279)) /locus_tag="TCM_015656" /product="YELLOW STRIPE like 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30068.m002569" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015480t3" /inference="similar to AA sequence:ricco:30068.m002569" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc302t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8860t1" mRNA complement(join(28970052..28971290,28971872..28971901, 28972017..28972151,28972234..28972328,28972699..28972871, 28972977..28973366,28973452..28974279)) /locus_tag="TCM_015656" /product="YELLOW STRIPE like 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30068.m002569" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015480t3" /inference="similar to AA sequence:ricco:30068.m002569" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc302t7; alternateUTRof:Thecc1EG015656t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8860t1" mRNA complement(join(28970072..28971345,28971478..28971592, 28971712..28971901,28972017..28972151,28972234..28972328, 28972699..28972871,28972977..28973357,28973452..28973722, 28973906..28974279)) /locus_tag="TCM_015656" /product="YELLOW STRIPE like 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002569" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015480t3" /inference="similar to AA sequence:ricco:30068.m002569" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8860t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8860t1" mRNA complement(join(28970072..28971345,28971478..28971592, 28971712..28971901,28972017..28972151,28972234..28972328, 28972699..28972871,28972977..28973366,28973452..28974279)) /locus_tag="TCM_015656" /product="YELLOW STRIPE like 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002569" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015480t3" /inference="similar to AA sequence:ricco:30068.m002569" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8860t2; alternateUTRof:Thecc1EG015656t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8860t1" CDS complement(join(28970417..28971290,28971872..28971901, 28972017..28972151,28972234..28972328,28972699..28972871, 28972977..28973334)) /locus_tag="TCM_015656" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30068.m002569; paralog of Thecc1EG015480t3" /codon_start=1 /product="YELLOW STRIPE like 1 isoform 3" /protein_id="EOY23906.1" /db_xref="TAIR:AT4G24120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2EF88" /translation="MSMEEVKEKKENQRDNLEERQQETEGSRIIQPWTKQITVRGFIV SILIGTIYSVIAMKLNLTTGMVPNLNVSAALLAFVFIRTWTKVVQKAGFMSKPFTRQE NTMIQTCAVACYSIAVGGGFASYLLGLNRKTYEMSGVDTVGNSANAVKEPGFGWMTGF LFVVCFVGLFVLIPLRKVMIVDLKLTYPSGLATAVLINGFHSQGDKAAKKQVHGFLKY FSASFLWGFFQWFFSGKEGCGFKQFPTFGLQAWKQTFFFDFSLTYVLRETIPMWIGIV GYVLLSIMSIIVIPIMFPQLKWYYVLVAYMLAPSLAFCNAYGAGLTDINMAYNYGKVA LFILAALTGKENGVVAGLAGCGLIKSVVSVACILMQDFKTAHYTLTSPRAMFLSQAIG TAIGCITAPLSFFVFYKAFDVGNPYGEFKAPYALIYRNMAILGVQGFSALPHHCLQLC YGFFALAVAVNLVRDFSPHKIGKWMPLPMVMAVPFLVGAYFAVDMCLGTLIVFVWQKL KAKEAELMVPAVASGLICGEGLWILPASILALAKINPPICMKFLPS" CDS complement(join(28970417..28971290,28971872..28971901, 28972017..28972151,28972234..28972328,28972699..28972871, 28972977..28973334)) /locus_tag="TCM_015656" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30068.m002569; paralog of Thecc1EG015480t3" /codon_start=1 /product="YELLOW STRIPE like 1 isoform 3" /protein_id="EOY23907.1" /db_xref="TAIR:AT4G24120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2EF88" /translation="MSMEEVKEKKENQRDNLEERQQETEGSRIIQPWTKQITVRGFIV SILIGTIYSVIAMKLNLTTGMVPNLNVSAALLAFVFIRTWTKVVQKAGFMSKPFTRQE NTMIQTCAVACYSIAVGGGFASYLLGLNRKTYEMSGVDTVGNSANAVKEPGFGWMTGF LFVVCFVGLFVLIPLRKVMIVDLKLTYPSGLATAVLINGFHSQGDKAAKKQVHGFLKY FSASFLWGFFQWFFSGKEGCGFKQFPTFGLQAWKQTFFFDFSLTYVLRETIPMWIGIV GYVLLSIMSIIVIPIMFPQLKWYYVLVAYMLAPSLAFCNAYGAGLTDINMAYNYGKVA LFILAALTGKENGVVAGLAGCGLIKSVVSVACILMQDFKTAHYTLTSPRAMFLSQAIG TAIGCITAPLSFFVFYKAFDVGNPYGEFKAPYALIYRNMAILGVQGFSALPHHCLQLC YGFFALAVAVNLVRDFSPHKIGKWMPLPMVMAVPFLVGAYFAVDMCLGTLIVFVWQKL KAKEAELMVPAVASGLICGEGLWILPASILALAKINPPICMKFLPS" CDS complement(join(28970417..28971345,28971478..28971592, 28971712..28971901,28972017..28972151,28972234..28972328, 28972699..28972871,28972977..28973334)) /locus_tag="TCM_015656" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002569; paralog of Thecc1EG015480t3" /codon_start=1 /product="YELLOW STRIPE like 1 isoform 1" /protein_id="EOY23904.1" /db_xref="TAIR:AT4G24120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2EF88" /translation="MSMEEVKEKKENQRDNLEERQQETEGSRIIQPWTKQITVRGFIV SILIGTIYSVIAMKLNLTTGMVPNLNVSAALLAFVFIRTWTKVVQKAGFMSKPFTRQE NTMIQTCAVACYSIAVGGGFASYLLGLNRKTYEMSGVDTVGNSANAVKEPGFGWMTGF LFVVCFVGLFVLIPLRKVMIVDLKLTYPSGLATAVLINGFHSQGDKAAKKQVHGFLKY FSASFLWGFFQWFFSGKEGCGFKQFPTFGLQAWKQTFFFDFSLTYVGAGMICSHLVNL SLLFGAVLSYGLMWPLINRLKGDWFPEDLQESSMKSLYGYKVFLSVALILGDGLYNFL KILCFTFINIHGRLKNKNQNTADEDDQKETVEGLKQNEVFLRETIPMWIGIVGYVLLS IMSIIVIPIMFPQLKWYYVLVAYMLAPSLAFCNAYGAGLTDINMAYNYGKVALFILAA LTGKENGVVAGLAGCGLIKSVVSVACILMQDFKTAHYTLTSPRAMFLSQAIGTAIGCI TAPLSFFVFYKAFDVGNPYGEFKAPYALIYRNMAILGVQGFSALPHHCLQLCYGFFAL AVAVNLVRDFSPHKIGKWMPLPMVMAVPFLVGAYFAVDMCLGTLIVFVWQKLKAKEAE LMVPAVASGLICGEGLWILPASILALAKINPPICMKFLPS" CDS complement(join(28970417..28971345,28971478..28971592, 28971712..28971901,28972017..28972151,28972234..28972328, 28972699..28972871,28972977..28973334)) /locus_tag="TCM_015656" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002569; paralog of Thecc1EG015480t3" /codon_start=1 /product="YELLOW STRIPE like 1 isoform 1" /protein_id="EOY23905.1" /db_xref="TAIR:AT4G24120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2EF88" /translation="MSMEEVKEKKENQRDNLEERQQETEGSRIIQPWTKQITVRGFIV SILIGTIYSVIAMKLNLTTGMVPNLNVSAALLAFVFIRTWTKVVQKAGFMSKPFTRQE NTMIQTCAVACYSIAVGGGFASYLLGLNRKTYEMSGVDTVGNSANAVKEPGFGWMTGF LFVVCFVGLFVLIPLRKVMIVDLKLTYPSGLATAVLINGFHSQGDKAAKKQVHGFLKY FSASFLWGFFQWFFSGKEGCGFKQFPTFGLQAWKQTFFFDFSLTYVGAGMICSHLVNL SLLFGAVLSYGLMWPLINRLKGDWFPEDLQESSMKSLYGYKVFLSVALILGDGLYNFL KILCFTFINIHGRLKNKNQNTADEDDQKETVEGLKQNEVFLRETIPMWIGIVGYVLLS IMSIIVIPIMFPQLKWYYVLVAYMLAPSLAFCNAYGAGLTDINMAYNYGKVALFILAA LTGKENGVVAGLAGCGLIKSVVSVACILMQDFKTAHYTLTSPRAMFLSQAIGTAIGCI TAPLSFFVFYKAFDVGNPYGEFKAPYALIYRNMAILGVQGFSALPHHCLQLCYGFFAL AVAVNLVRDFSPHKIGKWMPLPMVMAVPFLVGAYFAVDMCLGTLIVFVWQKLKAKEAE LMVPAVASGLICGEGLWILPASILALAKINPPICMKFLPS" mobile_element 28975007..28975093 /note="source:INTACT897F_F376_scaffold_6-int 45 128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28975295..28975528) /note="source:CACAO_on_SS_E42_scaffold_2 21896 22116" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(28975620..28977909) /note="source:CACAO_on_SS_E42_scaffold_2 19488 21860" /mobile_element_type="transposon:TIR/Mutator" gene 28981556..28982775 /locus_tag="TCM_015657" /note="dbxref CacaoGD:Thecc1EG015657" mRNA 28981556..28982775 /locus_tag="TCM_015657" /product="NADP-specific glutamate dehydrogenase, putative" /inference="alignment:exonerate-protein:2:frave:gene01903" /inference="similar to AA sequence:frave:gene01903" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12317t00001" CDS 28981830..28982612 /locus_tag="TCM_015657" /note="dbxref frave:gene01903" /codon_start=1 /product="NADP-specific glutamate dehydrogenase, putative" /protein_id="EOY23908.1" /db_xref="TAIR:AT4G24110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXX1" /translation="MCRSTDYNDFRSGHQNLLKIKAFFVRFSGLDSCTEPLSDSLTLL YPPRINEKTLEVSGSKVRPDLPAFVTLHRMVNVKTKIGEAIYGSRERVRAEDGVCFEV YSRKEKVLKGIFRKDDRQKWKLECKCAIERWDGETVGVDRAVADVCVAVEGDVPMGER VEMVVRKRGNNRRVGFDQLEEIPEEREGESESDGGCCCSCGESDGEGLEGRCDGDCGG GQEMDMEGVSWAVDVGLWVMCFGVGYLVSKASAKSLRRMRLL" mobile_element 28983562..28983624 /note="source:CACAO_M_E5899_F5_scaffold_2 20750 20809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28983684..28983778) /note="source:CACAO_on_S_E46_scaffold_2 571 653" /mobile_element_type="transposon:TIR/Mutator" mobile_element 28983752..28983880 /note="source:scaffold_3_CACTA_0396 894 984" /mobile_element_type="transposon:TIR/CACTA" gene 28984331..28992883 /locus_tag="TCM_015658" /note="dbxref CacaoGD:Thecc1EG015658" mRNA join(28984331..28984824,28985978..28986232, 28986321..28986445,28986583..28986627,28987091..28987172, 28987275..28987343,28987497..28987667,28987762..28987827, 28987973..28988041,28988174..28988245,28988335..28988675, 28989404..28989537,28989661..28989755,28989824..28989862, 28989954..28990013,28991138..28991239,28991349..28991400, 28991505..28991560,28991650..28991714,28991819..28991870, 28992129..28992883) /locus_tag="TCM_015658" /product="Serine/threonine-protein kinase fray2 isoform 1" /inference="alignment:exonerate- protein:2:frave:gene01904.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031938t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019643001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8720t6" mRNA join(28984423..28984824,28985978..28986232, 28986321..28986445,28986583..28986627,28987091..28987172, 28987275..28987343,28987497..28987667,28987762..28987827, 28987973..28988041,28988174..28988245,28988335..28988658, 28989404..28989537,28989661..28989755,28989824..28989862, 28989954..28990013,28991138..28991239,28991349..28991400, 28991505..28991560,28991650..28991714,28991819..28991845) /locus_tag="TCM_015658" /product="Kinase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:frave:gene01904.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031938t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019643001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc768t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8720t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc763t6" mRNA join(28984532..28984824,28985978..28986232, 28986321..28986445,28986583..28986627,28987091..28987172, 28987275..28987343,28987497..28987667,28987762..28987827, 28987973..28988041,28988174..28988245,28988335..28988675, 28989404..28989537,28989661..28989755,28989824..28989862, 28989951..28990013,28991138..28991239,28991349..28991400, 28991505..28991560,28991650..28991714,28991819..28991870, 28992129..28992747) /locus_tag="TCM_015658" /product="Serine/threonine-protein kinase fray2 isoform 2" /inference="alignment:exonerate- protein:2:frave:gene01904.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031938t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019643001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8720t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8720t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc763t6" CDS join(28984651..28984824,28985978..28986232, 28986321..28986445,28986583..28986627,28987091..28987172, 28987275..28987343,28987497..28987667,28987762..28987827, 28987973..28988041,28988174..28988245,28988335..28988675, 28989404..28989537,28989661..28989755,28989824..28989862, 28989951..28990013,28991138..28991239,28991349..28991400, 28991505..28991560,28991650..28991714,28991819..28991870, 28992129..28992197) /locus_tag="TCM_015658" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG031938t1" /codon_start=1 /product="Serine/threonine-protein kinase fray2 isoform 2" /protein_id="EOY23910.1" /db_xref="Phytozome:GSVIVT01019643001" /db_xref="TAIR:AT4G10730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JMF4" /translation="MRRMGGSQRSYSANPSDYRLLEEVGYGASATVYRAIYLPFNDVV AVKCLDLDRCSSNLDDIRREAQTMSLIDHPNVIRALCSFVVDRNLWVVMPFMSEGSCL HLMKIAYPDGFEEPAIGSILKETLKALDYLHRQGHIHRDVKAGNILLDNNGTVKLADF GVSACMFDAGDRQRSRNTFVGTPCWMAPEVLQPGSGYNSKADIWSFGITALELAHGHA PFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTAEKLLKH SFFKHAKPPELSVKKLFADLPPLWNRVKALQLKDAAQLALKKMPSAEQEAISQSEYQR GVSAWNFDIGDLKAQASLVRDDDDIHECKDDDASMKSSLGHKAAAYCESSLGKLNLNR EVSQAETGGPRNVDLSQSDCLNGKGKNLECDIVEAGCQETVGLRKNGSSIDVMASTSE RDVVLTRAKTVKPRQTQSGPLTPGAVLNHSSSERVRNSERFENEILPANEKVCQVRKA PSFSGPLMLPNRASANSLSAPIKSSGGFRDSLDDKSKANLVQIKGRFSVTSENLDLVK DIPLSTVSRRSSQQTSPLRKSASVGDWIFESKQVPTNHSSKDLTNGNMPTSIFMNHLQ NLFQQTSLQQDLIVNLLNIFQPAEFVDATQNGKLPPLPRCSESNGNVETAASERERLL LCKISELQSRMMNLTDELTAEKLKYEQLQQQLRSMSGAEENGIRLEGDA" CDS join(28984651..28984824,28985978..28986232, 28986321..28986445,28986583..28986627,28987091..28987172, 28987275..28987343,28987497..28987667,28987762..28987827, 28987973..28988041,28988174..28988245,28988335..28988675, 28989404..28989537,28989661..28989755,28989824..28989862, 28989954..28990013,28991138..28991239,28991349..28991400, 28991505..28991560,28991650..28991714,28991819..28991870, 28992129..28992197) /locus_tag="TCM_015658" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG031938t1" /codon_start=1 /product="Serine/threonine-protein kinase fray2 isoform 1" /protein_id="EOY23909.1" /db_xref="Phytozome:GSVIVT01019643001" /db_xref="TAIR:AT4G10730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JMF4" /translation="MRRMGGSQRSYSANPSDYRLLEEVGYGASATVYRAIYLPFNDVV AVKCLDLDRCSSNLDDIRREAQTMSLIDHPNVIRALCSFVVDRNLWVVMPFMSEGSCL HLMKIAYPDGFEEPAIGSILKETLKALDYLHRQGHIHRDVKAGNILLDNNGTVKLADF GVSACMFDAGDRQRSRNTFVGTPCWMAPEVLQPGSGYNSKADIWSFGITALELAHGHA PFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTAEKLLKH SFFKHAKPPELSVKKLFADLPPLWNRVKALQLKDAAQLALKKMPSAEQEAISQSEYQR GVSAWNFDIGDLKAQASLVRDDDDIHECKDDDASMKSSLGHKAAAYCESSLGKLNLNR EVSQAETGGPRNVDLSQSDCLNGKGKNLECDIVEAGCQETVGLRKNGSSIDVMASTSE RDVVLTRAKTVKPRQTQSGPLTPGAVLNHSSSERVRNSERFENEILPANEKVCQVRKA PSFSGPLMLPNRASANSLSAPIKSSGGFRDSLDDKSKANLVQIKGRFSVTSENLDLVK DIPLSTVSRRSSQTSPLRKSASVGDWIFESKQVPTNHSSKDLTNGNMPTSIFMNHLQN LFQQTSLQQDLIVNLLNIFQPAEFVDATQNGKLPPLPRCSESNGNVETAASERERLLL CKISELQSRMMNLTDELTAEKLKYEQLQQQLRSMSGAEENGIRLEGDA" CDS join(28984651..28984824,28985978..28986232, 28986321..28986445,28986583..28986627,28987091..28987172, 28987275..28987343,28987497..28987667,28987762..28987827, 28987973..28988041,28988174..28988245,28988335..28988658, 28989404..28989409) /locus_tag="TCM_015658" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG031938t1" /codon_start=1 /product="Kinase superfamily protein isoform 3" /protein_id="EOY23911.1" /db_xref="Phytozome:GSVIVT01019643001" /db_xref="TAIR:AT4G10730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JMF4" /translation="MRRMGGSQRSYSANPSDYRLLEEVGYGASATVYRAIYLPFNDVV AVKCLDLDRCSSNLDDIRREAQTMSLIDHPNVIRALCSFVVDRNLWVVMPFMSEGSCL HLMKIAYPDGFEEPAIGSILKETLKALDYLHRQGHIHRDVKAGNILLDNNGTVKLADF GVSACMFDAGDRQRSRNTFVGTPCWMAPEVLQPGSGYNSKADIWSFGITALELAHGHA PFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTAEKLLKH SFFKHAKPPELSVKKLFADLPPLWNRVKALQLKDAAQLALKKMPSAEQEAISQSEYQR GVSAWNFDIGDLKAQASLVRDDDDIHECKDDDASMKSSLGHKAAAYCESSLGKLNLNR EVSQAETGGPRNVDLSQSDCLNGKGKNLECDIVEAGCQETVGLRKNGSSIDVMASTSE RDVVLTRAKTVKPRQTQSGPLTPGAVLNHSSSERV" gene 28992937..28996238 /locus_tag="TCM_015659" /note="dbxref CacaoGD:Thecc1EG015659" mRNA join(28992937..28993199,28993281..28993487, 28993597..28993676,28994999..28995074,28995339..28995461, 28995551..28996123) /locus_tag="TCM_015659" /product="Zinc finger matrin-type protein 1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14610.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019642001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12758t00001" mRNA join(28992945..28993199,28993281..28993487, 28993597..28993676,28994996..28995074,28995339..28995461, 28995551..28996238) /locus_tag="TCM_015659" /product="Zinc finger matrin-type protein 1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14610.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019642001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8712t1; inference alignment:Newbler:10:TSA:cgbaL_g12758t00001" CDS join(28993077..28993199,28993281..28993487, 28993597..28993676,28994996..28995074,28995339..28995461, 28995551..28995697) /locus_tag="TCM_015659" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Zinc finger matrin-type protein 1, putative isoform 2" /protein_id="EOY23913.1" /db_xref="Phytozome:GSVIVT01019642001" /db_xref="TAIR:AT5G41960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GY28" /translation="MISRYLTQPFSCSSFCFKPPLTPSSISKLKPFNHLTKIHKKKEI KKEICRAEFSTDAPLAAAIGACMLSSLLLPVADSGEEDGSDSVIDAGDTRFAAMGIIS FIPYFNWLSWVFAWLDTGKRRYAVYSIVYLAPYLSRSNLSLSPEDSWLPISSIIFCII HVQLEASIKNGDLQGFQIFSEAAKHLSSRSREDDTHFKGHKKPEVTKREYRNLPDAEE QSRNEIRQWGIPGRPSENHEQSNGDWDDDGRSER" CDS join(28993077..28993199,28993281..28993487, 28993597..28993676,28994999..28995074,28995339..28995461, 28995551..28995697) /locus_tag="TCM_015659" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zinc finger matrin-type protein 1, putative isoform 1" /protein_id="EOY23912.1" /db_xref="Phytozome:GSVIVT01019642001" /db_xref="TAIR:AT5G41960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GY28" /translation="MISRYLTQPFSCSSFCFKPPLTPSSISKLKPFNHLTKIHKKKEI KKEICRAEFSTDAPLAAAIGACMLSSLLLPVADSGEEDGSDSVIDAGDTRFAAMGIIS FIPYFNWLSWVFAWLDTGKRRYAVYSIVYLAPYLRSNLSLSPEDSWLPISSIIFCIIH VQLEASIKNGDLQGFQIFSEAAKHLSSRSREDDTHFKGHKKPEVTKREYRNLPDAEEQ SRNEIRQWGIPGRPSENHEQSNGDWDDDGRSER" gene 28996396..28999040 /locus_tag="TCM_015660" /note="dbxref CacaoGD:Thecc1EG015660" mRNA join(28996396..28996838,28996945..28997245, 28997340..28997498,28998055..28998350,28998600..28999040) /locus_tag="TCM_015660" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400032257" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015477t1" /inference="similar to AA sequence:TAIR:AT4G27680.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc299t8_C1" CDS join(28996635..28996838,28996945..28997245, 28997340..28997498,28998055..28998350,28998600..28998710) /locus_tag="TCM_015660" /note="paralog of Thecc1EG015477t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY23914.1" /db_xref="TAIR:AT4G27680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T090" /translation="MGRDRRTETTFLQDLLLYAASASLSCLVLFAGLKHLDLNRESSK KSIENKKAISKRLGRAFIHTNPYEDVIAGDVVNPDDIKVEFQSVGGFDRIKEALYELA ILPLRRPELFAYGKLLGPPKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRVSNLMSK WFGDAQKLVTAVFSLAYKLQPAIIFIDEVESFLGQRRATDQEAMSIMKTEFMALWDGF TTDQNARVMVLGATNRPTELDEAILRRFSQVFEIGRPDCNDREKILKVILKNERVDDN IDFDHIARLCEGYTGSDLLELCKQAAYIPLRDFLSDEKAGKKRQVPRPLSQLDLEKTL ATSNKTSIGIDEHNGYSSCSSA" gene complement(28999042..29000861) /locus_tag="TCM_015661" /note="dbxref CacaoGD:Thecc1EG015661" mRNA complement(28999042..29000861) /locus_tag="TCM_015661" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29706.m001327" /inference="similar to AA sequence:frave:gene16650" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(28999166..29000434) /locus_tag="TCM_015661" /note="dbxref frave:gene16650" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23915.1" /translation="MDVAKREKSCKANAPSPSGYSASDNLDESLLLEIFCRLPCKSAH RFKCVSKRWFSIISDSYFIQRLLLAHPQPPPFTLLFKYESNDQQKMKVLITSKEAVFR SQGFSLSFLPCFKANEKDPVNIIASCNGLLLCSSAATKACPTVYYICNPLTKQWFALP PVYHCNQEAYSGLICEKEGGAKGGNGTFSINDQYKYRVVCIVRHSKTDLAVKIFSSET GIWKEIFRRYRDYYPMVYLHHQAIAYEGVLHWWSPLNRSFVTCDPYNKDGNLRFSFAL NYAAMDLAFEECPGVCKGRLRLCQQLLSLTEGFSIIRVWNLEEDHDGGKWCLKHEFFL HELESEVTQLVEYARCCSVPRFRLLSVDPYDENIIYMSCLGSIVSCNMEGKTLEIVSE YPAADGNSQQSRAYPFHLPWWPTPVPSYIN" gene complement(29000908..29003472) /locus_tag="TCM_015662" /note="dbxref CacaoGD:Thecc1EG015662" mRNA complement(join(29000908..29001398,29001570..29001768, 29001950..29002322,29003028..29003472)) /locus_tag="TCM_015662" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11300.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11300.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02938t00002" mRNA complement(join(29000917..29001398,29001690..29001768, 29001950..29002322,29003028..>29003398)) /locus_tag="TCM_015662" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11300.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11300.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1231t1_C1; inference alignment:Newbler:10:TSA:cgbaL_g02938t00002" CDS complement(join(29001392..29001398,29001570..29001768, 29001950..29002322,29003028..29003417)) /locus_tag="TCM_015662" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23916.1" /db_xref="Phytozome:POPTR_0001s11300.1" /db_xref="TAIR:AT4G24090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK84" /translation="MPSAVTSTLLLSSNLRSLSKPSFCIAPSTCPKSFHSLTSPLLKP LILKCSSNSEEKETSNDLKDALSGIVGKQVEELLNREENKGLLDGLEKASQRVEMAKR QLVEIEKQELEAQLLGNYINQLEARASEIAECQQEISQARAMVEEAELSLSLNADNVE DRDAFRSKDGEGIDNDKERLESIKAALISAVVGTLAGLPISLTQVSSRTQLLLPLSAT FISCALFGVTFRYAVRRDLDNFQLKTGTSAAFGFVKGLGTLVGGSPLELDPGSFLSYA FDGAVYVSQNLIIFLFAAVGLDLCFKMRILSPFPMKRSAPNTNTRV" CDS complement(join(29001392..29001398,29001690..29001768, 29001950..29002322,29003028..>29003396)) /locus_tag="TCM_015662" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY23917.1" /db_xref="Phytozome:POPTR_0001s11300.1" /db_xref="TAIR:AT4G24090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK84" /translation="TLLLSSNLRSLSKPSFCIAPSTCPKSFHSLTSPLLKPLILKCSS NSEEKETSNDLKDALSGIVGKQVEELLNREENKGLLDGLEKASQRVEMAKRQLVEIEK QELEAQLLGNYINQLEARASEIAECQQEISQARAMVEEAELSLSLNADNVEDRDAFRS KDGEGIDNDKERLESIKAALISAVVGTLAGLPISLTQVSSRTQLLLPLSATFISCALF GVTFRYAVRRDLDNFQLKTGTSAAFGFVKGLGTLVGGSPLELDPGSFLSYAFDGAVV" mobile_element complement(29004171..29004689) /note="source:scaffold_9_CACTA_0932 716 1571" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29004848..29005785) /note="source:CACAO_M_E49279_F74_scaffold_6 1016 1938" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29005745..29009057 /locus_tag="TCM_015663" /note="dbxref CacaoGD:Thecc1EG015663" mRNA join(29005745..29006209,29006543..29006689, 29006853..29006951,29007309..29007500,29007620..29007778, 29008023..29008094,29008273..29009057) /locus_tag="TCM_015663" /product="Metal-dependent protein hydrolase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019639001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015474t1" /inference="similar to AA sequence:ricco:30068.m002563" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03372t00001" CDS join(29005949..29006209,29006543..29006689, 29006853..29006951,29007309..29007500,29007620..29007778, 29008023..29008094,29008273..29008497) /locus_tag="TCM_015663" /note="dbxref ricco:30068.m002563; paralog of Thecc1EG015474t1" /codon_start=1 /product="Metal-dependent protein hydrolase" /protein_id="EOY23918.1" /db_xref="TAIR:AT5G41970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K000" /translation="MWAIIRGGFNQKLFNLHKTLSRPLMATSNLIRVSSPAYSTGSPN QAPPRRVGTHNGSFHCDEALGCFMIRLTDKFSNSEIVRTRDPKVLEGLDAVLDVGGVY DPSHDRYDHHQKGFEEVFGHGFNTKLSSAGLVYKHFGKEIIAKELQLGEDHPDVHRLF LAIYKSFMEAIDAIDNGINQFDTDKPPRYVNNTHLSSRVGRLNLDWTDPDQSPEKENE AFQQAMALSGSEFLDILRNFNRTFFNFQSVCFHAKSWLPARSIVMECIAERYDIDPSG EIMVLRRFCPWKLHLFELEEEMKVEPPIKYVLYEDERGKQWRVQAVGVSPDRFESRKP LPAQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNKTYEGALAMARTALKI" gene 29008932..29010645 /locus_tag="TCM_015664" /note="dbxref CacaoGD:Thecc1EG015664" mRNA 29008932..29010645 /locus_tag="TCM_015664" /product="Phosphoenolpyruvate carboxylase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14560.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015665t1" /inference="similar to AA sequence:ricco:27953.m000063" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04048t00001" CDS 29009255..29010295 /locus_tag="TCM_015664" /note="dbxref ricco:27953.m000063; paralog of Thecc1EG015665t1" /codon_start=1 /product="Phosphoenolpyruvate carboxylase family protein" /protein_id="EOY23919.1" /db_xref="TAIR:AT4G10750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82487" /translation="MATLTYTAAAAASPKLSLRNPLSFISSKSLSFPSSKPSISLLKP LNSTKFPTLSPLKCSPNPSPSPSTSSLKSRLRNGETLYGIFLLSFSPTLAEIAALSGY DFVVIDMEHGPGEIHESLQILRTLSPTNTPAIIRLPEFSAAWAKKALDLGPQGIMFPM IDSPKDAKKAVSYCRFPPDGIRGSAHTVVRASNYGINEGYLSNYMEDLLIMCQVETVD AVKKVEEIAAVDGVDCVQMGPLDLSASLGYLWDPGHKNVREMLRTAERGVLKSDPGDG GAFLAGFAMPHDPPVELGRRGYHMVSGAVDFALFRNAALADVKSFKNSVTVGSDDDGE EDKDGDEKYWSE" gene 29010839..29011943 /locus_tag="TCM_015665" /note="dbxref CacaoGD:Thecc1EG015665" mRNA join(29010839..29011485,29011566..29011943) /locus_tag="TCM_015665" /product="Phosphoenolpyruvate carboxylase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g24030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015664t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400010377" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1673t1" CDS join(29010939..29011485,29011566..29011831) /locus_tag="TCM_015665" /note="paralog of Thecc1EG015664t1" /codon_start=1 /product="Phosphoenolpyruvate carboxylase family protein, putative" /protein_id="EOY23920.1" /db_xref="Phytozome:PGSC0003DMP400010377" /db_xref="TAIR:AT4G10750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GY23" /translation="MPCQLYHHSKLAWNKTDTSLSDYPSNFSFFLEPNFPAMASLPPA TKTLKARLYDGDTLYGLFLLSFSPTLAEISGLAGYDFVVVDVEHGHGGISQALPCLQA LSATHTPTILRLPENSPSWAKKALDLGPDGLMFPMIDEPESAKNAVSYCRYPPAGIRG AAHPIVRASKYGLDDDYLEMCEHCVMVGPTDLSASMGYLRDPGNEKVKKMMNVAEATV LGGGAAYLAGFSMPHDPPNEMRKRGFRMVCGGVDLALFRNAALEDVKKFKTV" gene 29012497..29016993 /locus_tag="TCM_015666" /note="dbxref CacaoGD:Thecc1EG015666" mRNA join(29012497..29013252,29013697..29013841, 29013923..29014091,29014532..29014802,29015092..29015357, 29015492..29015707,29016009..29016117,29016289..29016993) /locus_tag="TCM_015666" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G64650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015472t1" /inference="similar to AA sequence:TAIR:AT1G64650.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2020t2" CDS join(29012883..29013252,29013697..29013841, 29013923..29014091,29014532..29014802,29015092..29015357, 29015492..29015707,29016009..29016117,29016289..29016350) /locus_tag="TCM_015666" /note="paralog of Thecc1EG015472t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY23921.1" /db_xref="TAIR:AT1G64650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGV0" /translation="MHTDIHLRPTKLHKEIVNSLVAANSLLTPPCFFVACTVIRYFHS SLSQSLLSVSPLFLFRSFFAGKEKRKTDTMEAFYLLVFGALASLVAALELSKTSKDRI NTSSAFNSFKNNYLVVYSLMMAGDWLQGPYVYYLYSQYGFGKGEIGHLFIAGFGSSMF FGTIVGSLADKKGRKRACVTYCITYILSCITKHSPQYKVLMLGRVLGGIATSLLFSAF ESWLVAEHNKRGFDQQWLSITFSKAIFLGNGLMAILSGLFGNVLVDNLQLGPVAPFDA ASCFLAIGMIIILTSWTENYGDSSESKDLLTQFRGAAAAITADEKITLLGAIQSLFEG SMYTFVFLWTPALSPNDEDIPHGFIFATFMLSSMLGSSIASRLLAQQNPRVESYMQIV FMVSSVSLLLPVISSFLIAPSGVKGGSISFSGCIQLLGFCTFEACVGIFWPSIMKMRS QYIPEEARSTIMNFFRVPLNIFVCIALYNVKALPMTVMFGMCSMFLFLASVLQRRLMV IAEMHKSRSQDWTAMQEMGSEADPLNS" gene 29018009..29018969 /locus_tag="TCM_015667" /note="dbxref CacaoGD:Thecc1EG015667" mRNA join(29018009..29018231,29018313..29018923) /locus_tag="TCM_015667" /product="Stellacyanin, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene01910" /inference="similar to AA sequence:ricco:30068.m002560" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8708t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8708t1" CDS join(29018039..29018231,29018313..29018707) /locus_tag="TCM_015667" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002560" /codon_start=1 /product="Stellacyanin, putative isoform 1" /protein_id="EOY23922.1" /db_xref="TAIR:AT1G64640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYS5" /translation="MANLGSPRYHFFSAFQVLLLFQAKVLCYQYKVGDLDAWGIPTSA NLQVYAKWSKYHTFKIGDSLLFLYPPSQDSVIQVTEQSYNSCNLKDPILYLNNGNSLF NITKPGEFFFTSGEPGHCEKKQKLYISVLSGNGSAYAPSYGPSALPDTASSPSYPTVF GTIPQPPSSSPTLGFPLFITAVIASATWAIIDGMM" mRNA join(<29018123..29018179,29018313..29018969) /locus_tag="TCM_015667" /product="Stellacyanin, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene01910" /inference="similar to AA sequence:Phytozome:GSVIVT01019636001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1448t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8708t1" CDS join(<29018125..29018179,29018313..29018707) /locus_tag="TCM_015667" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Stellacyanin, putative isoform 2" /protein_id="EOY23923.1" /db_xref="Phytozome:GSVIVT01019636001" /db_xref="TAIR:AT1G64640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYS5" /translation="VQGWRFRCLGYSHISKPAVFLYPPSQDSVIQVTEQSYNSCNLKD PILYLNNGNSLFNITKPGEFFFTSGEPGHCEKKQKLYISVLSGNGSAYAPSYGPSALP DTASSPSYPTVFGTIPQPPSSSPTLGFPLFITAVIASATWAIIDGMM" gene complement(29019138..29023452) /locus_tag="TCM_015668" /note="dbxref CacaoGD:Thecc1EG015668" mRNA complement(join(29019138..29019818,29020140..29020219, 29020521..29020737,29020837..29021165,29021270..29021353, 29021841..29021939,29022022..29023452)) /locus_tag="TCM_015668" /product="MRNAadenosine methylase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11230.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11230.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9622t1" mRNA complement(join(29019138..29020219,29020521..29020737, 29020837..29021165,29021270..29021353,29021841..29021939, 29022022..29023452)) /locus_tag="TCM_015668" /product="MRNAadenosine methylase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11230.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11230.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:PASA:2:TSA:puevd3b015140t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9622t1" CDS complement(join(29019557..29019818,29020140..29020219, 29020521..29020737,29020837..29021165,29021270..29021353, 29021841..29021939,29022022..29023068)) /locus_tag="TCM_015668" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="MRNAadenosine methylase isoform 1" /protein_id="EOY23924.1" /db_xref="Phytozome:POPTR_0001s11230.1" /db_xref="TAIR:AT4G10760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK89" /translation="METHTGGGTNNEGTIATIKSIRTQLESRIQTQHATHLDLLASLQ SLDANIVPSLDLSLRIVSAFNHRPFSPTPPLPTPKKISHPPQHPPTHPVTDPKQLALV KPDQGDKPADEKGNPLSVVRAIVAECLLQRVPFKAIDSSTVLRKLENDENVTAAEKAA MRELGGDSGSILAVEMALRSMAEDNGGLEVEEFVVGGKSRVMILNIDRTRLVRELPEE PQNHLKRERINTVNESESLKINNNSNDEWVAPRPMSEIWMGGGDPGMMYPPGVPMAGP RGRGMGMMGRPPMGPNSGLSPAQRQRTEEDDLKDLEALLNKKSFKEMQKSKTGEEILD IINRPTARETAVAAKFKSKGGSQVREYCSALTKEDCRRQSGTFLACKKVHFKRIIAPH TDISLGDCSFLDTCRHMKTCKYVHYELDQTQDDLGPEKPLKPPRADYCSEVELGEPQW INCDIRSFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLW VTGRAMELGRECLELWGYKRCEEIIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKG NPEINRNIDTDVIVAEVRETSRKPDEMYPMLERISPRTRKLELFARMHNTQAGWISLG NQLNGVRLVDEGLRARYKAAYPHLDVQPASPPRASAMEIDSTSARSPFATESRAQFAD PAAPDAGLAPEERAMSVDGDMTS" mRNA complement(join(<29019726..29019818,29020140..29020219, 29020521..29020737,29020837..29020895,29021270..29021353, 29021841..29021939,29022022..29023276)) /locus_tag="TCM_015668" /product="MRNAadenosine methylase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11230.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11230.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc119t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9622t1" CDS complement(join(<29019728..29019818,29020140..29020219, 29020521..29020737,29020837..29020895,29021270..29021353, 29021841..29021939,29022022..29023068)) /locus_tag="TCM_015668" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="MRNAadenosine methylase isoform 2" /protein_id="EOY23925.1" /db_xref="Phytozome:POPTR_0001s11230.1" /db_xref="TAIR:AT4G10760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK89" /translation="METHTGGGTNNEGTIATIKSIRTQLESRIQTQHATHLDLLASLQ SLDANIVPSLDLSLRIVSAFNHRPFSPTPPLPTPKKISHPPQHPPTHPVTDPKQLALV KPDQGDKPADEKGNPLSVVRAIVAECLLQRVPFKAIDSSTVLRKLENDENVTAAEKAA MRELGGDSGSILAVEMALRSMAEDNGGLEVEEFVVGGKSRVMILNIDRTRLVRELPEE PQNHLKRERINTVNESESLKINNNSNDEWVAPRPMSEIWMGGGDPGMMYPPGVPMAGP RGRGMGMMGRPPMGPNSGLSPAQRQRTEEDDLKDLEALLNKKSFKEMQKSKTGEEILD IINRPTARETAVAAKFKSKGGSQVREYCSALTKEDCRRQSGTFLACKKVHFKRIIAPH TDISLGDCSFLDTCRHMKTDGLIFLWVTGRAMELGRECLELWGYKRCEEIIWVKTNQL QRIIRTGRTGHWLNHSKEHCLVGIKGNPEINRNIDTDVIVAEVRETSRKPDEMYPMLE RISPRTRKLELFARMHNTQAGWISLGNQLNGVRLVDEGLRARYKAAYPHLD" CDS complement(join(29020049..29020219,29020521..29020737, 29020837..29021165,29021270..29021353,29021841..29021939, 29022022..29023068)) /locus_tag="TCM_015668" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="MRNAadenosine methylase isoform 3" /protein_id="EOY23926.1" /db_xref="Phytozome:POPTR_0001s11230.1" /db_xref="TAIR:AT4G10760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK89" /translation="METHTGGGTNNEGTIATIKSIRTQLESRIQTQHATHLDLLASLQ SLDANIVPSLDLSLRIVSAFNHRPFSPTPPLPTPKKISHPPQHPPTHPVTDPKQLALV KPDQGDKPADEKGNPLSVVRAIVAECLLQRVPFKAIDSSTVLRKLENDENVTAAEKAA MRELGGDSGSILAVEMALRSMAEDNGGLEVEEFVVGGKSRVMILNIDRTRLVRELPEE PQNHLKRERINTVNESESLKINNNSNDEWVAPRPMSEIWMGGGDPGMMYPPGVPMAGP RGRGMGMMGRPPMGPNSGLSPAQRQRTEEDDLKDLEALLNKKSFKEMQKSKTGEEILD IINRPTARETAVAAKFKSKGGSQVREYCSALTKEDCRRQSGTFLACKKVHFKRIIAPH TDISLGDCSFLDTCRHMKTCKYVHYELDQTQDDLGPEKPLKPPRADYCSEVELGEPQW INCDIRSFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLW VTGRAMELGRECLELWGYKRCEEIIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKG NPEINRNIDTDVIVAEVRETSRKPDEMYPMLERISPRTRKLELFARMHNTQAGYGVLT HFSCFENYSNTLLSSIIGCQQRLL" mobile_element complement(29023254..29023500) /note="source:scaffold_5_CACTA_0580 11356 11591" /mobile_element_type="transposon:TIR/CACTA" gene complement(29023914..29029708) /locus_tag="TCM_015669" /note="dbxref CacaoGD:Thecc1EG015669" mRNA complement(join(29023914..29024858,29024954..29025136, 29025271..29025526,29025617..29026186,29027058..29027155, 29027282..29027814,29027917..29028013,29028098..29028692, 29028947..29029431,29029650..29029708)) /locus_tag="TCM_015669" /product="Oligopeptide transporter 7 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g16480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000190t2" /inference="similar to AA sequence:ricco:30068.m002558" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1971t6" mRNA complement(join(29023919..29024858,29024954..29025136, 29025271..29025526,29025617..29026186,29026273..29027213)) /locus_tag="TCM_015669" /product="Oligopeptide transporter 7 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g16480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000190t2" /inference="similar to AA sequence:ricco:30068.m002558" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1517t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1971t6" CDS complement(join(29024247..29024858,29024954..29025136, 29025271..29025526,29025617..29026186,29027058..29027155, 29027282..29027814,29027917..29027953)) /locus_tag="TCM_015669" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002558; paralog of Thecc1EG000190t2" /codon_start=1 /product="Oligopeptide transporter 7 isoform 1" /protein_id="EOY23927.1" /db_xref="TAIR:AT4G10770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82485" /translation="MEESKDEIIAPLIPKDEKDRDVSNPSSSSSSRAMASKSEVKEVQ EEEENSPVRQVALTVPTTDDPSLPVLTFRMWVLGTISCVLLSFLNQFFWYRTEPLTIT AISAQIAVVPLGQLMAAKITDRVFFKGTRWEFSLNPGPFNVKEHVLITIFANSGAGSV YAIHVVTVVKVFYKKHITFFVSLIVIITTQVLGFGWAGIFRRYLVEPAAMWWPANLVQ VSLFRALHEKEERAKGGVTRTQFFLIALICSFAYYVFPGYLFQMLTSLSWICWIFPKS VLAQQLGSGLYGLGIGAIGLDWSTISSYLGSPLASPWFATANVAAGFILIMYVLTPIT YWLNVYNAKTFPIFSDALFTSTGQEYNITAIIDSNFHLDIAAYEKEGPLYLSTFFAMT YGVGFAALTATIVHVALFHGREIWEQSKASFQEKKMDVHTRLMRKYKQVPEWWFVCIL LVNIAATILACEYYNDQLQLPWWGVLLACGIAIVFTLPIGIITAITNQTPGLNIITEY IIGYIYPGYPVANMCFKVYGYISMTQAVTFLQDFKLGHYMKIPPRTMFMAQVVGTLIA CFVYLGTAWWLMETIPDICDTTASNSVWTCPSDTVFYDASVIWGLVAPRRIFGDLGTY EAINWFFLAGAIAPLLVWLATKAFPHQEWIKLINMPVLIGATGMMPPATAVNYTTWII VGFLSGFVVYRYRPDLWQRYNYVLSGSLDAGLAFMGVLIYLCLGLENISLDWWGNDLD GCPLASCPTAKGIEVEGCPVYT" CDS complement(join(29024247..29024858,29024954..29025136, 29025271..29025526,29025617..29026071)) /locus_tag="TCM_015669" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002558; paralog of Thecc1EG000190t2" /codon_start=1 /product="Oligopeptide transporter 7 isoform 2" /protein_id="EOY23928.1" /db_xref="TAIR:AT4G10770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82485" /translation="MLTSLSWICWIFPKSVLAQQLGSGLYGLGIGAIGLDWSTISSYL GSPLASPWFATANVAAGFILIMYVLTPITYWLNVYNAKTFPIFSDALFTSTGQEYNIT AIIDSNFHLDIAAYEKEGPLYLSTFFAMTYGVGFAALTATIVHVALFHGREIWEQSKA SFQEKKMDVHTRLMRKYKQVPEWWFVCILLVNIAATILACEYYNDQLQLPWWGVLLAC GIAIVFTLPIGIITAITNQTPGLNIITEYIIGYIYPGYPVANMCFKVYGYISMTQAVT FLQDFKLGHYMKIPPRTMFMAQVVGTLIACFVYLGTAWWLMETIPDICDTTASNSVWT CPSDTVFYDASVIWGLVAPRRIFGDLGTYEAINWFFLAGAIAPLLVWLATKAFPHQEW IKLINMPVLIGATGMMPPATAVNYTTWIIVGFLSGFVVYRYRPDLWQRYNYVLSGSLD AGLAFMGVLIYLCLGLENISLDWWGNDLDGCPLASCPTAKGIEVEGCPVYT" gene 29029947..29032076 /locus_tag="TCM_015670" /note="dbxref CacaoGD:Thecc1EG015670" mRNA join(29029947..29030313,29030775..29030836, 29030964..29031088,29031448..29032076) /locus_tag="TCM_015670" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11220.1" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2630t3_C2" CDS 29031548..29031892 /locus_tag="TCM_015670" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23929.1" /translation="MSTAVIAERCWVGNMSGLMRKLRSTRKGNSFLRSQKLSKKTGST HVNFLDDSPDLASVWMPSRVFFFPIENIHVLFFPVHSSCVPCVDIVLDVIHFVNKIVN NSPYVACISACN" gene 29032873..29033712 /locus_tag="TCM_015671" /note="dbxref CacaoGD:Thecc1EG015671" mRNA 29032873..29033712 /locus_tag="TCM_015671" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS 29033191..29033565 /locus_tag="TCM_015671" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23930.1" /translation="MRRLGPAGCPWSHWGGCGDGIGILKSPGQRLGRNTTIWIKKNLI IESKLKLKTSVLGLLVRLRLKWEQQIIVCVIILSILIACFFGFITTWNQISCPAFANQ AESMCSTLWKLMGARFHKKQIQ" gene complement(29034021..29037900) /locus_tag="TCM_015672" /note="dbxref CacaoGD:Thecc1EG015672" mRNA complement(join(29034021..29034969,29035062..29035464, 29035554..29035711,29035799..29036019,29036112..29036339, 29036439..29036476,29037112..29037900)) /locus_tag="TCM_015672" /product="No lysine kinase 10 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005104t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14520.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8761t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8761t2" mRNA complement(join(29034105..29034969,29035062..29035464, 29035554..29035710,29036112..29036339,29036439..29036476, 29037112..29037900)) /locus_tag="TCM_015672" /product="No lysine kinase 10 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005104t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14520.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc233t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8761t2" CDS complement(join(29034215..29034969,29035062..29035464, 29035554..29035710,29036112..29036339,29036439..29036476, 29037112..29037171)) /locus_tag="TCM_015672" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005104t1" /codon_start=1 /product="No lysine kinase 10 isoform 2" /protein_id="EOY23932.1" /db_xref="Phytozome:POPTR_0003s14520.1" /translation="MEAADDCDLAEKDPSGRYVRYDEILGKGAFKTVYKGFDEADGIE VAWNQVNIEDVLQTPEQLERLYSEVHLLKSLKHENIMKFYNSWVDDKNKTINMITELF TSGSLRHTPEFMAPELYDEEYNELVDIYSFGLCMLEMITCEYPYNECKNPAQIYKKVT SGVKPASLGKVNNPQVKQFIEKCLLPASMRLPAVELLKDPFLLAETPKEVACGPLQLP NLMPKLVNLIQSEPLPMDIDPNSKKLQVNSSTKSIKETSRISTLELQCFTENNEFMLK GEKNDDNTISLTLRIADQCGRARNIHFSFYLDSDTAISIAAEMVEQLDLSNEDVTDIA ELIDSMIMKFVPCWKPSFGSISCLQDGSCCPSKATVKTVGKQEAFTDFAVVKCQDTQE SVSSDMSAECDGMVASDGSNNKPMGSSGYSYGECHKGSSTYDFGLLDIGVYNHPRHKE TGNEENLGESVLINDSTKNSETSLMDSCSFASQDMSLSSICSLSLADKDQVDELKLEL DAIDTQYHQCFQELMRMREEAMENAKKRWITKKRVSVV" CDS complement(join(29034215..29034969,29035062..29035464, 29035554..29035711,29035799..29036019,29036112..29036339, 29036439..29036476,29037112..29037171)) /locus_tag="TCM_015672" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005104t1" /codon_start=1 /product="No lysine kinase 10 isoform 1" /protein_id="EOY23931.1" /db_xref="Phytozome:POPTR_0003s14520.1" /translation="MEAADDCDLAEKDPSGRYVRYDEILGKGAFKTVYKGFDEADGIE VAWNQVNIEDVLQTPEQLERLYSEVHLLKSLKHENIMKFYNSWVDDKNKTINMITELF TSGSLRQYRKKHKNVDMKAIKNWARQILRGLHYLHSHNPPIIHRDLKCDNIFVNGNNG EVKIGDLGLATVMQKPTARSVIGTPEFMAPELYDEEYNELVDIYSFGLCMLEMITCEY PYNECKNPAQIYKKVTSGVKPASLGKVNNPQVKQFIEKCLLPASMRLPAVELLKDPFL LAETPKEVACGPLQLPNLMPKLVNLIQSEPLPMDIDPNSKKLQVNSSTKSIKETSRIS TLELQCFTENNEFMLKGEKNDDNTISLTLRIADQCGRARNIHFSFYLDSDTAISIAAE MVEQLDLSNEDVTDIAELIDSMIMKFVPCWKPSFGSISCLQDGSCCPSKATVKTVGKQ EAFTDFAVVKCQDTQESVSSDMSAECDGMVASDGSNNKPMGSSGYSYGECHKGSSTYD FGLLDIGVYNHPRHKETGNEENLGESVLINDSTKNSETSLMDSCSFASQDMSLSSICS LSLADKDQVDELKLELDAIDTQYHQCFQELMRMREEAMENAKKRWITKKRVSVV" mobile_element 29039235..29039385 /note="source:scaffold_5_CACTA_0599 17506 17655" /mobile_element_type="transposon:TIR/CACTA" gene 29040075..29043724 /locus_tag="TCM_015673" /note="dbxref CacaoGD:Thecc1EG015673" mRNA join(29040075..29040160,29041028..29041186, 29041269..29041359,29042578..29042629,29042712..29042851, 29043069..29043129,29043228..29043375,29043454..29043724) /locus_tag="TCM_015673" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(29040100..29040160,29041028..29041186, 29041269..29041359,29042578..29042629,29042712..29042851, 29043069..29043129,29043228..29043375,29043454..29043698) /locus_tag="TCM_015673" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23933.1" /translation="MFECRIGDLKNPAFKMVIHICLVVTAVGITFVHKAKTLARGRIT PSVATAPYERAYSRREIPTGFMVDETFPLGLTVDEKFLPGLWWMRHSHRVDGRQGIPT TEAYVPVTVQGWDVTFCKMASHGRAFLFTHVQNVVDGPEEDRQLIIGLYTVTDVYCSD CGELLGWSQCLIFSVFLSYTLVLKIDFKPPFDYPSTGTASPFGEFSVSRNCKTSMACP WDSVLTSDPAVIFAKDIVSDQESHASVVSEILVEETSTKNARSTEAADSNINGISKDF GGCISEQDLQDTYCDECNSRRNDSSAEECIPVNEFVKSSGFS" mobile_element complement(29040150..29040191) /note="source:scaffold_8_CACTA_0862 1643 1683" /mobile_element_type="transposon:TIR/CACTA" gene complement(29044565..29046522) /locus_tag="TCM_015674" /note="dbxref CacaoGD:Thecc1EG015674" mRNA complement(join(29044565..29044735,29044848..29045063, 29045539..29045694,29045782..29045848,29045979..29046522)) /locus_tag="TCM_015674" /product="K-box region and MADS-box transcription factor family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g00400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007713t2" /inference="similar to AA sequence:Phytozome:GSVIVT01012110001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b015145t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8735t4" mRNA complement(join(29044782..29045063,29045167..29045208, 29045316..29045357,29045539..29045694,29045782..29045848, 29045973..29046522)) /locus_tag="TCM_015674" /product="MADS-box protein FBP24, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g00400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007713t2" /inference="similar to AA sequence:Phytozome:GSVIVT01012110001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8735t4" CDS complement(join(29044848..29045063,29045539..29045694, 29045782..29045848,29045979..29046166)) /locus_tag="TCM_015674" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG007713t2" /codon_start=1 /product="K-box region and MADS-box transcription factor family protein isoform 2" /protein_id="EOY23935.1" /db_xref="Phytozome:GSVIVT01012110001" /db_xref="TAIR:AT5G23260.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HU63" /translation="MGRSKIEMKLIEDTTNRQVTFSKFRAGLLKKAHEVSVLCDAEIG LIIFSSTGELFDYCTQPLSMEQIIERYQLAKGTQTPQQSGLQNMSEKLRRESHCLELS LNHLNGSELNSLKIEDLEELEQQLEYSINKVRARKIEEKQASSRQQQVPIEANMLEEK QQQVLNQFPFLGEEQPISVLQLVSLPPSRPYLGQPMQSNLQEANTHHQ" CDS complement(join(29044848..29045063,29045167..29045208, 29045316..29045357,29045539..29045694,29045782..29045848, 29045973..29046166)) /locus_tag="TCM_015674" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG007713t2" /codon_start=1 /product="MADS-box protein FBP24, putative isoform 1" /protein_id="EOY23934.1" /db_xref="Phytozome:GSVIVT01012110001" /db_xref="TAIR:AT5G23260.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ATE5" /translation="MGRSKIEMKLIEDTTNRQVTFSKFRAGLLKKAHEVSVLCDAEIG LIIFSSTGELFDYCTQPLRFHMEQIIERYQLAKGTQTPQQSGLQNMSEKLRRESHCLE LSLNHLNGSELNSLKIEDLEELEQQLEYSINKVRARKEQLLKLQMDNLERNVEKMEVE NNQLCHWIEEKQASSRQQQVPIEANMLEEKQQQVLNQFPFLGEEQPISVLQLVSLPPS RPYLGQPMQSNLQEANTHHQ" gene complement(29048018..29052051) /locus_tag="TCM_015675" /note="dbxref CacaoGD:Thecc1EG015675" mRNA complement(join(29048018..29048671,29048912..29049115, 29049338..29049508,29050790..29052051)) /locus_tag="TCM_015675" /product="UBX domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14510.1" /inference="similar to AA sequence:ricco:30068.m002555" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9628t2" CDS complement(join(29048444..29048671,29048912..29049115, 29049338..29049508,29050790..29051566)) /locus_tag="TCM_015675" /note="dbxref ricco:30068.m002555" /codon_start=1 /product="UBX domain-containing protein" /protein_id="EOY23936.1" /db_xref="TAIR:AT4G10790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82483" /translation="MVDVADKLAYFQAITGLEDPDLCTEILQAHGWDLELAISSFTSA NQNSASTANSDSEPRESLNRTESASGSGLVAAPSPGLAWKLITLPISVISGSIGLISG AVGLGLWAAGGVLSYSLGMIGLGSGRGGESSARLVSVSAAASEAMDFVAAFEREYGTR RPNFVGEGFMDALQRSRNAFKLLFVYLHSPEHPDSPVFCEQTLCSEAVGSFVNENFVA WGGSIRASEGFKMSNSFKASRFPFCAVVMPATNQRIALLQQVEGPKSPEEMLMMLQRV LEESAPVLVAARLDAEERRNNMRLREEQDAAYQAALEADQARERQRREEQERLEREAA EAELKRKEEEEARERAAREAAEKEAARARMQQEKALSIGDEPEKGPNVTQVLVRFPTG ERKERRFHCTVTIQSLYDYVDSLGCLEVEDYSLVSNFPRVAYGPEKRSLSLKEAGLHP QASLFVELN" gene complement(29052142..29054171) /locus_tag="TCM_015676" /note="dbxref CacaoGD:Thecc1EG015676" mRNA complement(join(29052142..29053185,29053307..29053348, 29053469..29053628,29053739..29053811,29053918..29054171)) /locus_tag="TCM_015676" /product="HIT-type Zinc finger family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019628001" /inference="similar to AA sequence:frave:gene20410" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07324t00001" CDS complement(join(29052308..29053185,29053307..29053348, 29053469..29053628,29053739..29053811,29053918..29053997)) /locus_tag="TCM_015676" /note="dbxref frave:gene20410" /codon_start=1 /product="HIT-type Zinc finger family protein" /protein_id="EOY23937.1" /db_xref="TAIR:AT5G63830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q337A7" /translation="MAETIHTSENLSNPSPLNPPSRVICHVCQKQFSQYTCPRCNSRY CSLHCYKSHSLRCTESFMRENVVEELRQLQPDDEIKRKMLEILKRFHSEEETHTLDED DDDSTLSDETIQKILSGREVSFDDLSLEEKKRFQKAVASGELSKMIEPWDPWWLNPAA GTICLSRDGTRLVQPIANLEASVPPEDDLESNESSGIPVGPETPLPSLRKLISTEPSP LLAVHLVDIVYSYCFTLRVYNGEWQSDAIGSAMVVLSISCVLGQAGQPETVREAVSYC LEQTCSPAYRHIGGLQFGLALVDDVATLLSLGGPALICMLFDLQRMIQAGEKELKSEK PRMLRKAEIKSKLKLAERKVHFIMCWVHEQPGEAWSSLGAMVKAEKSSFMDYGGSKSF SKRENKAENKGKVLIEEM" mobile_element 29054257..29054367 /note="source:CACAO_M_E24018_F98_scaffold_4 2006 2112" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29054556..29058962) /locus_tag="TCM_015677" /note="dbxref CacaoGD:Thecc1EG015677" mRNA complement(join(29054556..29055177,29055286..29055429, 29055525..29055670,29055741..29056013,29056118..29056258, 29056356..29056817,29058763..29058962)) /locus_tag="TCM_015677" /product="Aluminum activated malate transporter family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005107t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14490.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage" CDS complement(join(29054704..29055177,29055286..29055429, 29055525..29055670,29055741..29056013,29056118..29056258, 29056356..29056695)) /locus_tag="TCM_015677" /note="paralog of Thecc1EG005107t1" /codon_start=1 /product="Aluminum activated malate transporter family protein, putative" /protein_id="EOY23938.1" /db_xref="Phytozome:POPTR_0003s14490.1" /db_xref="TAIR:AT4G00910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK95" /translation="MIHGKEVFEGVEWRIRVADGSSEVLVQETGLARKAWLRIKGLIS GLAFKVWMFLKRAWDMGVNDPKKLIHCIKVGLALAIVSLFYFMRPLYDGVGGNAMWAV MTVVVVFEQTVGATLYKCLNRVCGTCLAGFLAVGLHWVANRSGESFEPFVVGASVFLL ASVATFSRLIPSAKSLFDYGAMIFILTFSFVAVSGYRVDKLFDKAHQRISTIIIGTSL CIIVIMIVCPIWSGQELHSLIVRNMDKLADSLDEPILPIMVSGCVTQYFNHRGVCTNS NEEADKKLQGYKCVLSSKASEESMANFARWEPSHGRFNFRHPWKQYLKIGASMRSCAY RIEALSSCINSEKQAAEFIKKHLSISCLKVSSSSSSTIRELAETVKTMKKSSTIDLLV GEMNTAVQELQNDLKSLSYLLNPSTIPENKKMKTSMEATATVPLMEIIPVVTLASILI EIAVRIEALVGAVKELAKLADFATHDDKSKQTKTKDKFVPDEKQSEGTMKAFQRV" gene complement(29059167..29064721) /locus_tag="TCM_015678" /note="dbxref CacaoGD:Thecc1EG015678" mRNA complement(join(29059167..29059546,29059651..29059948, 29060032..29060157,29060294..29060431,29060539..29060643, 29060877..29062448,29063050..29063109,29063208..29063249, 29063478..29063577,29063770..29063859,29064300..29064719)) /locus_tag="TCM_015678" /product="Serine/threonine-protein kinase WNK-related, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019626001" /inference="similar to AA sequence:Phytozome:GSVIVT01019626001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc499t2; alternateUTRof:Thecc1EG015678t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc733t5" mRNA complement(join(29059167..29059546,29060032..29060157, 29060294..29060431,29060539..29060640,29060877..29062448, 29063050..29063109,29063208..29063249,29063478..29063577, 29063770..29063859,29064300..29064632)) /locus_tag="TCM_015678" /product="Serine/threonine-protein kinase WNK-related, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019626001" /inference="similar to AA sequence:Phytozome:GSVIVT01019626001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8790t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc733t5" mRNA complement(join(29059183..29059948,29060032..29060157, 29060294..29060431,29060539..29060643,29060877..29062448, 29063050..29063109,29063208..29063249,29063478..29063577, 29063770..29063859,29064300..29064721)) /locus_tag="TCM_015678" /product="Serine/threonine-protein kinase WNK-related, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019626001" /inference="similar to AA sequence:Phytozome:GSVIVT01019626001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc733t5" CDS complement(join(29059484..29059546,29060032..29060157, 29060294..29060431,29060539..29060640,29060877..29062448, 29063050..29063109,29063208..29063249,29063478..29063577, 29063770..29063859,29064300..29064409)) /locus_tag="TCM_015678" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Serine/threonine-protein kinase WNK-related, putative isoform 3" /protein_id="EOY23941.1" /db_xref="Phytozome:GSVIVT01019626001" /db_xref="TAIR:AT1G64625.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BHT6" /translation="MGEAEMGSVLKQTLKNLCCSNGWSYGVFWRFDQRNSMLLTMEDA YYEEQMGPLVDSMLLKFHILGQGIIGQAAFTGKHQWIFPDSHGKAWDSTGNQNIFQDE SEFQNQFSSGIKTIAIISVETRGVVQFGSTQKILEGLEFLDETKKLFYAMESCHGLIP LENETCNLDGFFASLAASGNFYNENLITEQGGCSKEPKGRPCSLTNLSKSSSSMREIQ DQRINSVQQNLSHLRTQLQTISAEAQIISSGKTGNCLAADTPCASTWSSEGSILTSFE TSLPSERGIWDSPNALPRKANGHLLCGKTEQHFQGASTFTSFYSTGELVDAELPIVDS FGKTAENLHSLGCTGGLLDSVVNLQRIPEEFNPVDFATGLSNSFTLDDLSQWFAPSPH HNINGAGATMTSDLSCSKEVTSVSSTLVGGDTIIDIAVRQTANSITDTFISNIEKSTI VHDDGYDLFDDVGLNFGFGKTGECLEDIIMPLLHGDNAAVSSGMSESISELDVHSMNG KRKGLFSELGLEELLDGVSHSSYATKSSVEDQFSTTKRRKSESSSSNFHQGQFVGLSC SGGSMNLVQHSHNWDKSNNTIFNKEVHQKSQVGVWIDDSYSVNSGHAVVATSKKPTRK RAKPGESTRPRPKDRQLIQDRIKELRGIIPHSGKLSIDLLLERTIKHLLFLQGVTKYA DKIKQTDEPKLIGQENGLLPKHNKMSGGATWAYEVGAQTIPIVVKDLNPPGQMLIETL CEDRGLFLEIADVIRGFGLNILKGVMELQEDKIWARFMVEFLEREARPWDMEPASLRS KA" mRNA complement(join(29059523..29059546,29059651..29060157, 29060294..29060431,29060539..29060643,29060877..29062448, 29063050..29063109,29063208..29063249,29063478..29063577, 29063770..29063859,29064300..29064719)) /locus_tag="TCM_015678" /product="Serine/threonine-protein kinase WNK-related, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019626001" /inference="similar to AA sequence:Phytozome:GSVIVT01019626001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc733t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc733t5" CDS complement(join(29059760..29059948,29060032..29060157, 29060294..29060431,29060539..29060643,29060877..29062448, 29063050..29063109,29063208..29063249,29063478..29063577, 29063770..29063859,29064300..29064409)) /locus_tag="TCM_015678" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Serine/threonine-protein kinase WNK-related, putative isoform 1" /protein_id="EOY23939.1" /db_xref="Phytozome:GSVIVT01019626001" /db_xref="TAIR:AT1G64625.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BHT6" /translation="MGEAEMGSVLKQTLKNLCCSNGWSYGVFWRFDQRNSMLLTMEDA YYEEQMGPLVDSMLLKFHILGQGIIGQAAFTGKHQWIFPDSHGKAWDSTGNQNIFQDE SEFQNQFSSGIKTIAIISVETRGVVQFGSTQKILEGLEFLDETKKLFYAMESCHGLIP LENETCNLDGFFASLAASGNFYNENLITEQGGCSKEPKGRPCSLTNLSKSSSSMREIQ DQRINSVQQNLSHLRTQLQTISAEAQIISSGKTGNCLAADTPCASTWSSEGSILTSFE TSLPSERGIWDSPNALPRKANGHLLCGKTEQHFQGASTFTSFYSTGELVDAELPIVDS FGKTAENLHSLGCTGGLLDSVVNLQRIPEEFNPVDFATGLSNSFTLDDLSQWFAPSPH HNINGAGATMTSDLSCSKEVTSVSSTLVGGDTIIDIAVRQTANSITDTFISNIEKSTI VHDDGYDLFDDVGLNFGFGKTGECLEDIIMPLLHGDNAAVSSGMSESISELDVHSMNG KRKGLFSELGLEELLDGVSHSSYATKSSVEDQFSTTKRRKSESSSSNFHQGQFVGLSC SGGSMNLVQHSHNWDKSNNTIFNKEVHQKSQVGVWIDDSYSVNSGHAVVATSKKPTRK RAKPGESTRPRPKDRQLIQDRIKELRGIIPHSGKQLSIDLLLERTIKHLLFLQGVTKY ADKIKQTDEPKLIGQENGLLPKHNKMSGGATWAYEVGAQTIPIVVKDLNPPGQMLIET LCEDRGLFLEIADVIRGFGLNILKGVMELQEDKIWARFMVEATEQVERTDIIWSLLLL LQQTGTSGIDSANQESRAMDGGISLSNNFQQPLLLPPVSMAETLQ" CDS complement(join(29059760..29059948,29060032..29060157, 29060294..29060431,29060539..29060643,29060877..29062448, 29063050..29063109,29063208..29063249,29063478..29063577, 29063770..29063859,29064300..29064409)) /locus_tag="TCM_015678" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Serine/threonine-protein kinase WNK-related, putative isoform 1" /protein_id="EOY23940.1" /db_xref="Phytozome:GSVIVT01019626001" /db_xref="TAIR:AT1G64625.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BHT6" /translation="MGEAEMGSVLKQTLKNLCCSNGWSYGVFWRFDQRNSMLLTMEDA YYEEQMGPLVDSMLLKFHILGQGIIGQAAFTGKHQWIFPDSHGKAWDSTGNQNIFQDE SEFQNQFSSGIKTIAIISVETRGVVQFGSTQKILEGLEFLDETKKLFYAMESCHGLIP LENETCNLDGFFASLAASGNFYNENLITEQGGCSKEPKGRPCSLTNLSKSSSSMREIQ DQRINSVQQNLSHLRTQLQTISAEAQIISSGKTGNCLAADTPCASTWSSEGSILTSFE TSLPSERGIWDSPNALPRKANGHLLCGKTEQHFQGASTFTSFYSTGELVDAELPIVDS FGKTAENLHSLGCTGGLLDSVVNLQRIPEEFNPVDFATGLSNSFTLDDLSQWFAPSPH HNINGAGATMTSDLSCSKEVTSVSSTLVGGDTIIDIAVRQTANSITDTFISNIEKSTI VHDDGYDLFDDVGLNFGFGKTGECLEDIIMPLLHGDNAAVSSGMSESISELDVHSMNG KRKGLFSELGLEELLDGVSHSSYATKSSVEDQFSTTKRRKSESSSSNFHQGQFVGLSC SGGSMNLVQHSHNWDKSNNTIFNKEVHQKSQVGVWIDDSYSVNSGHAVVATSKKPTRK RAKPGESTRPRPKDRQLIQDRIKELRGIIPHSGKQLSIDLLLERTIKHLLFLQGVTKY ADKIKQTDEPKLIGQENGLLPKHNKMSGGATWAYEVGAQTIPIVVKDLNPPGQMLIET LCEDRGLFLEIADVIRGFGLNILKGVMELQEDKIWARFMVEATEQVERTDIIWSLLLL LQQTGTSGIDSANQESRAMDGGISLSNNFQQPLLLPPVSMAETLQ" CDS complement(join(29059969..29060157,29060294..29060431, 29060539..29060643,29060877..29062448,29063050..29063109, 29063208..29063249,29063478..29063577,29063770..29063859, 29064300..29064409)) /locus_tag="TCM_015678" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Serine/threonine-protein kinase WNK-related, putative isoform 4" /protein_id="EOY23942.1" /db_xref="Phytozome:GSVIVT01019626001" /db_xref="TAIR:AT1G64625.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BHT6" /translation="MGEAEMGSVLKQTLKNLCCSNGWSYGVFWRFDQRNSMLLTMEDA YYEEQMGPLVDSMLLKFHILGQGIIGQAAFTGKHQWIFPDSHGKAWDSTGNQNIFQDE SEFQNQFSSGIKTIAIISVETRGVVQFGSTQKILEGLEFLDETKKLFYAMESCHGLIP LENETCNLDGFFASLAASGNFYNENLITEQGGCSKEPKGRPCSLTNLSKSSSSMREIQ DQRINSVQQNLSHLRTQLQTISAEAQIISSGKTGNCLAADTPCASTWSSEGSILTSFE TSLPSERGIWDSPNALPRKANGHLLCGKTEQHFQGASTFTSFYSTGELVDAELPIVDS FGKTAENLHSLGCTGGLLDSVVNLQRIPEEFNPVDFATGLSNSFTLDDLSQWFAPSPH HNINGAGATMTSDLSCSKEVTSVSSTLVGGDTIIDIAVRQTANSITDTFISNIEKSTI VHDDGYDLFDDVGLNFGFGKTGECLEDIIMPLLHGDNAAVSSGMSESISELDVHSMNG KRKGLFSELGLEELLDGVSHSSYATKSSVEDQFSTTKRRKSESSSSNFHQGQFVGLSC SGGSMNLVQHSHNWDKSNNTIFNKEVHQKSQVGVWIDDSYSVNSGHAVVATSKKPTRK RAKPGESTRPRPKDRQLIQDRIKELRGIIPHSGKQLSIDLLLERTIKHLLFLQGVTKY ADKIKQTDEPKLIGQENGLLPKHNKMSGGATWAYEVGAQTIPIVVKDLNPPGQMLIET LCEDRGLFLEIADVIRGFGLNILKGVMELQEDKIWARFMVEVNTEVKNSSNVTNFYMI SRK" mobile_element 29065743..29065791 /note="source:CACAO_M_E49593_F244_scaffold_7 629 682" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29075040..29076122) /locus_tag="TCM_015680" /note="dbxref CacaoGD:Thecc1EG015680" mRNA complement(join(29075040..29075507,29075766..29075919, 29076017..29076122)) /locus_tag="TCM_015680" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9619t1" CDS complement(join(29075243..29075507,29075766..29075919, 29076017..29076101)) /locus_tag="TCM_015680" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23943.1" /translation="MATSKHLVAALLVGFLLLSHAVARLHVHETGPCKFDSNGDCLTQ EKERNAEGCHFAGTCSTAAECRQPCAALGRNPDAVKYLNVSNGTVFGLYAQFLNAMGL GLETRTRISFGRKPLVDWAKPKEGGKKEIGKGLRDSSDTITYDIISIGTDTVIIPPVN IVGDVAK" gene 29077748..29081381 /locus_tag="TCM_015681" /note="dbxref CacaoGD:Thecc1EG015681" mRNA join(29077748..29078008,29079164..29079964, 29080059..29081381) /locus_tag="TCM_015681" /product="BTB/POZ domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022951t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11160.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc431t8" CDS join(29079203..29079964,29080059..29080496) /locus_tag="TCM_015681" /note="paralog of Thecc1EG022951t1" /codon_start=1 /product="BTB/POZ domain-containing protein" /protein_id="EOY23944.1" /db_xref="Phytozome:POPTR_0001s11160.2" /db_xref="TAIR:AT3G05675.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8LR46" /translation="MDLTAVAKPCNLGDKSTSDVILRLRNDEGRPEWFYSHSSILIKK SRFFADQLSNPVSGPCIEIQCSDSTYDHHVNLLRLLYLPTDLLLDSLDSVKSAIGILQ LAVAFQCEDITNCCIRYLEAIPWEDKEEEQILKAVSKLGPIAMPILARIQPVDVSATK NVFVSAVRFATSIGGSCPPFGDELKTSAQEQVEFMLGGDEDTPLVTADDEVKAVVKMG LSQICSLFERELSSLLVISDVTADTVENRILQSLSDLKTELDNVMWGLKVKLIEVTGK VLEAVGYGNVILPAPYRVQLLKTWLPYIRKIKPLLDANGNKETDFPYKMDEDLCQSIE GAIVSLVLALPSNDQADILSDWMETEQVRYPDLSEAFEVWCYRTKSAKRRLMEGLDRV GNPTISL" gene 29081676..29084810 /locus_tag="TCM_015682" /note="dbxref CacaoGD:Thecc1EG015682" mRNA join(29081676..29081867,29083492..29083640, 29084493..29084810) /locus_tag="TCM_015682" /product="ORMDL family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005108t1" /inference="similar to AA sequence:frave:gene25095" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13291t00001" CDS join(29081691..29081867,29083492..29083640, 29084493..29084631) /locus_tag="TCM_015682" /note="dbxref frave:gene25095; paralog of Thecc1EG005108t1" /codon_start=1 /product="ORMDL family protein" /protein_id="EOY23945.1" /db_xref="TAIR:AT5G42000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHY3" /translation="MYVRAVPPTDLNRNTEWFTYPGVWTTYILILFFSWLIVLSLFGS SPGTAWTIVHLSHFFVTYHFFHWKKGTPFGDDQGIYNGLTWWEQIDNGKQLTRNRKFL TVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINADH" gene complement(29086165..29088993) /locus_tag="TCM_015683" /note="dbxref CacaoGD:Thecc1EG015683" mRNA complement(join(29086165..29086227,29086326..29086362, 29086520..29086673,29087280..29088110,29088639..29088993)) /locus_tag="TCM_015683" /product="F-box family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002546" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005109t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s14450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc546t2" mRNA complement(join(29086336..29086362,29086520..29086673, 29087296..29088110,29088639..29088942)) /locus_tag="TCM_015683" /product="F-box family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002546" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005109t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s14450.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc546t2; alternateUTRof:Thecc1EG015683t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc546t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc552t10" mRNA complement(join(29086395..29086422,29086520..29086673, 29087296..29088110,29088639..29088942)) /locus_tag="TCM_015683" /product="F-box family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002546" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005109t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s14450.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc530t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc546t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc552t10" CDS complement(join(29086673,29087296..29088110, 29088639..29088662)) /locus_tag="TCM_015683" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005109t2" /codon_start=1 /product="F-box family protein isoform 2" /protein_id="EOY23947.1" /db_xref="Phytozome:POPTR_0003s14450.1" /db_xref="TAIR:AT4G24060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXU9" /translation="MDTAKWPQEIVVKPIEEIVTNTCPKPAALERKARPQKEQALNCP RCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSASSSSS SSSSSSKKLPDLVTPPSLSQSSTQNPKIQDGQDLNLAFPASQGYRSMSELVQVPNSVE NNKSQIPSSSSPTSQLSALELLTGISSRGLNSFLPMSVPDPNTVYTSGFPMQEFKPTL NFSLDGLGSGYGSLQGVQETTGRLLFPFEDLKQVSSTTEIEQNKEQGDSAGYWTGMLG GGS" CDS complement(join(29086673,29087296..29088110, 29088639..29088662)) /locus_tag="TCM_015683" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005109t2" /codon_start=1 /product="F-box family protein isoform 2" /protein_id="EOY23948.1" /db_xref="Phytozome:POPTR_0003s14450.1" /db_xref="TAIR:AT4G24060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXU9" /translation="MDTAKWPQEIVVKPIEEIVTNTCPKPAALERKARPQKEQALNCP RCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSASSSSS SSSSSSKKLPDLVTPPSLSQSSTQNPKIQDGQDLNLAFPASQGYRSMSELVQVPNSVE NNKSQIPSSSSPTSQLSALELLTGISSRGLNSFLPMSVPDPNTVYTSGFPMQEFKPTL NFSLDGLGSGYGSLQGVQETTGRLLFPFEDLKQVSSTTEIEQNKEQGDSAGYWTGMLG GGS" CDS complement(join(29087292..29088110,29088639..29088662)) /locus_tag="TCM_015683" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005109t2" /codon_start=1 /product="F-box family protein isoform 1" /protein_id="EOY23946.1" /db_xref="Phytozome:POPTR_0003s14450.1" /db_xref="TAIR:AT4G24060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXU9" /translation="MDTAKWPQEIVVKPIEEIVTNTCPKPAALERKARPQKEQALNCP RCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSASSSSS SSSSSSKKLPDLVTPPSLSQSSTQNPKIQDGQDLNLAFPASQGYRSMSELVQVPNSVE NNKSQIPSSSSPTSQLSALELLTGISSRGLNSFLPMSVPDPNTVYTSGFPMQEFKPTL NFSLDGLGSGYGSLQGVQETTGRLLFPFEDLKQVSSTTEIEQNKEQGDSAGYWTGMLG GGSW" mobile_element complement(29096016..29096954) /note="source:CACAO_PIF_E144_scaffold_10 1203 2372" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 29097817..29103417 /locus_tag="TCM_015684" /note="dbxref CacaoGD:Thecc1EG015684" mRNA join(29097817..29098350,29098628..29099843, 29100366..29100401,29100531..29100582,29101399..29101478, 29101577..29101670,29101843..29103266) /locus_tag="TCM_015684" /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005111t3" /inference="similar to AA sequence:Phytozome:POPTR_0001s11110.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1071t1; inference alignment:Newbler:10:TSA:cgbaL_g12117t00001" mRNA join(29098197..29098350,29098628..29099846, 29100004..29100094,29100244..29100401,29100531..29100585, 29101399..29101478,29101577..29101670,29101843..29102952) /locus_tag="TCM_015684" /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005111t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s11110.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8788t1; inference alignment:Newbler:10:TSA:cgbaL_g12117t00001" mRNA join(29098263..29098350,29098628..29099846, 29100004..29100094,29100244..29100401,29100531..29100582, 29101399..29101478,29101577..29101670,29101843..29103417) /locus_tag="TCM_015684" /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005111t3" /inference="similar to AA sequence:Phytozome:POPTR_0001s11110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12117t00001" CDS join(29098656..29099846,29100004..29100094, 29100244..29100401,29100531..29100585,29101399..29101478, 29101577..29101670,29101843..29102429) /locus_tag="TCM_015684" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005111t2" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 2" /protein_id="EOY23950.1" /db_xref="Phytozome:POPTR_0001s11110.1" /db_xref="TAIR:AT5G42010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXU8" /translation="MGSYFEEEEDQFFDTREEISSVSDSSSVCSEECGSGPGFGLVNG FWDSFDQYKFWSMFPESVDKRRHRFRKWMGLSLDWNSITKEDPGGSYSDEIELGIDRI SQDSGAVLRTSGLEDGVSSNRSFVSFRSNDAQEPAENCSKGDCFAHQAKNLDGHVELL AVDQVQNGTNSCLQGRGSSKSVSSEDFGRTPMSSPFVELHLHREVEGRPSIDVRRKVK KSWLRKLGAMAHIVERHVEVASKHGNHDSASGEKMKRVRVHPCSKSSKELSSLYCGQE FTAHEGSILTMKFSLDGQYLATAGEDGIVRVWKVVEDESLDKLDIQDLDSSCLYFRMN HLSRLTPLNVDKENIDKIKRLRRSSDSTCVIFPPKVFRILEKPVHEFQGHSGEVLALS WSKKGSLLSSSVDKTVRLWQVGYDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKV RIWEVLRCRVVDYTDIRDIVTAVCYRPDGQGGIVGSMTGNCRFYEIIGSNRLQLDAPI CLQGKKKLPGKRITGFEFSPSDPSKVIITSADSLVRVLSGRDVACKLKASGFRIATSQ ISATFSQDGKQIISASEDSNVYIWNYTNQEKNSSKAKTILSRESFLSHNASVAIPWCG IETIPGTLRSPELGGDVQRNGLANVQKHHNPKVELEQIMPHSSPDCFSLTRVLLESLT RGSATWPEETLPNASPATIASDMCKFELKVLKSAYQSMLSSHKWGLVIVTASWDGRIR TYLNYGLPIRL" CDS join(29098656..29099846,29100004..29100094, 29100244..29100401,29100531..29100582,29101399..29101478, 29101577..29101670,29101843..29102429) /locus_tag="TCM_015684" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005111t3" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 1" /protein_id="EOY23949.1" /db_xref="Phytozome:POPTR_0001s11110.1" /db_xref="TAIR:AT5G42010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXU8" /translation="MGSYFEEEEDQFFDTREEISSVSDSSSVCSEECGSGPGFGLVNG FWDSFDQYKFWSMFPESVDKRRHRFRKWMGLSLDWNSITKEDPGGSYSDEIELGIDRI SQDSGAVLRTSGLEDGVSSNRSFVSFRSNDAQEPAENCSKGDCFAHQAKNLDGHVELL AVDQVQNGTNSCLQGRGSSKSVSSEDFGRTPMSSPFVELHLHREVEGRPSIDVRRKVK KSWLRKLGAMAHIVERHVEVASKHGNHDSASGEKMKRVRVHPCSKSSKELSSLYCGQE FTAHEGSILTMKFSLDGQYLATAGEDGIVRVWKVVEDESLDKLDIQDLDSSCLYFRMN HLSRLTPLNVDKENIDKIKRLRRSSDSTCVIFPPKVFRILEKPVHEFQGHSGEVLALS WSKKGSLLSSSVDKTVRLWQVGYDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKV RIWEVLRCRVVDYTDIRDIVTAVCYRPDGQGGIVGSMTGNCRFYEIIGNRLQLDAPIC LQGKKKLPGKRITGFEFSPSDPSKVIITSADSLVRVLSGRDVACKLKASGFRIATSQI SATFSQDGKQIISASEDSNVYIWNYTNQEKNSSKAKTILSRESFLSHNASVAIPWCGI ETIPGTLRSPELGGDVQRNGLANVQKHHNPKVELEQIMPHSSPDCFSLTRVLLESLTR GSATWPEETLPNASPATIASDMCKFELKVLKSAYQSMLSSHKWGLVIVTASWDGRIRT YLNYGLPIRL" CDS join(29098656..29099843,29100366..29100401, 29100531..29100582,29101399..29101478,29101577..29101670, 29101843..29102429) /locus_tag="TCM_015684" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005111t3" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 3" /protein_id="EOY23951.1" /db_xref="Phytozome:POPTR_0001s11110.1" /db_xref="TAIR:AT5G42010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXU8" /translation="MGSYFEEEEDQFFDTREEISSVSDSSSVCSEECGSGPGFGLVNG FWDSFDQYKFWSMFPESVDKRRHRFRKWMGLSLDWNSITKEDPGGSYSDEIELGIDRI SQDSGAVLRTSGLEDGVSSNRSFVSFRSNDAQEPAENCSKGDCFAHQAKNLDGHVELL AVDQVQNGTNSCLQGRGSSKSVSSEDFGRTPMSSPFVELHLHREVEGRPSIDVRRKVK KSWLRKLGAMAHIVERHVEVASKHGNHDSASGEKMKRVRVHPCSKSSKELSSLYCGQE FTAHEGSILTMKFSLDGQYLATAGEDGIVRVWKVVEDESLDKLDIQDLDSSCLYFRMN HLSRLTPLNVDKENIDKIKRLRRSSDSTCVIFPPKVFRILEKPVHEFQGHSGEVLALS WSKKIVTAVCYRPDGQGGIVGSMTGNCRFYEIIGNRLQLDAPICLQGKKKLPGKRITG FEFSPSDPSKVIITSADSLVRVLSGRDVACKLKASGFRIATSQISATFSQDGKQIISA SEDSNVYIWNYTNQEKNSSKAKTILSRESFLSHNASVAIPWCGIETIPGTLRSPELGG DVQRNGLANVQKHHNPKVELEQIMPHSSPDCFSLTRVLLESLTRGSATWPEETLPNAS PATIASDMCKFELKVLKSAYQSMLSSHKWGLVIVTASWDGRIRTYLNYGLPIRL" mobile_element complement(29104653..29104733) /note="source:CACAO_Again_on_E170_scaffold_7 2589 2675" /mobile_element_type="transposon:TIR/hAT" mobile_element 29104827..29105835 /note="source:CACAO_hAT_E1920_scaffold_4 1 1029" /mobile_element_type="transposon:TIR/hAT" mobile_element 29105835..29106306 /note="source:scaffold_4_CACTA_0483 22 487" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29106695..29107307 /note="source:scaffold_10_CACTA_0130 7078 7692" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29110665..29111096 /note="source:CACAO_PIF_E119_scaffold_3 4231 4666" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(29111551..29111599) /note="source:CACAO_M_S_E101631_F270_scaffold_9 11883 11931" /mobile_element_type="retrotransposon:LTR/Copia" gene 29112078..29113416 /locus_tag="TCM_015685" /note="dbxref CacaoGD:Thecc1EG015685" mRNA join(29112078..29112498,29112661..29113416) /locus_tag="TCM_015685" /product="R2r3-myb transcription factor, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005112t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11100.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8772t2" CDS join(29112366..29112498,29112661..29113367) /locus_tag="TCM_015685" /note="paralog of Thecc1EG005112t1" /codon_start=1 /product="R2r3-myb transcription factor, putative" /protein_id="EOY23952.1" /db_xref="Phytozome:POPTR_0001s11100.1" /db_xref="TAIR:AT5G49330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYQ9" /translation="MGRAPCCTKVGLKRGPWTATEDTLLTNYIKSHGEGHWRSLPIKA GLLRCGKSCRLRWMNYIRPDIKRGNITPDEDDLIIRLHSLLGNRWSLIAKRLPGRTDN EIKNYWNSHLSKRVKKSETNSSNSKEASRSSRKANKTSEKKQKSKEKQEGANPTATTT VHQPKASRVSPFSLLTGSSGFDSKISGPSSCGEGSRSGANSDTDVFDFPPYWPDGNAG AATNSGKAMVYDENQQEFPYGFDTGVGDGNMLDDIFQEYQKLLVVDHDPGERNSFADS LLI" gene complement(29114978..29174297) /locus_tag="TCM_015686" /note="dbxref CacaoGD:Thecc1EG015686" mRNA complement(join(29114978..29115748,29115895..29115986, 29116216..29116295,29116626..29116721,29116839..29116919, 29117038..29117118,29117396..29117479,29117663..29117760, 29118168..29118262,29118364..29118437,29118604..29118869, 29118972..29119210,29120121..29120603)) /locus_tag="TCM_015686" /product="Methyltransferases,copper ion binding isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019613001" /inference="similar to AA sequence:ricco:30068.m002543" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8786t3" mRNA complement(join(29115317..29115748,29115895..29115986, 29116708..29116721,29116839..29116920,29117042..29117118, 29117396..29117479,29117663..29117760,29118168..29118262, 29118364..29118437,29118604..29118869,29118972..29119153)) /locus_tag="TCM_015686" /product="Methyltransferases,copper ion binding isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019613001" /inference="similar to AA sequence:ricco:30068.m002543" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00174t00001_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8786t3" CDS complement(join(29115348..29115748,29115895..29115986, 29116708..29116721,29116839..29116920,29117042..29117118, 29117396..29117479,29117663..29117760,29118168..29118262, 29118364..29118437,29118604..29118869,29118972..29119104)) /locus_tag="TCM_015686" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30068.m002543" /codon_start=1 /product="Methyltransferases,copper ion binding isoform 3" /protein_id="EOY23955.1" /db_xref="TAIR:AT1G64600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GW63" /translation="MASLISETTQKIFTPESLRAAAKQSERCLDVPVRLRRAIKKYLR EQEDPYMRRKVLRLSESFSEIKDVNLHLTAETSKELVEDPLKSVEQSKRWKIKSAYGD IGLTYRDDETVAYVASRMPAVYSACYRVLGEVRRRLPGFSPTKVLDFGAGTGSAFWAI REVWPKTVEKINIVEPSQSMQRAGRSLIQGLKNLPLIHSYASLQTLTKDISKSEREHD LVIASYVLGEVPSLKDRITIVRQLWNLTRDVLVLVEPGTPHGSNIISQMRSHILWMEK KCRKAKANKEGSKDLIDLRSGAFIIAPCPHDGRESWPLDGIKFETLKEQRAKRNPEDL EIDYEDLVNIKETADVIPYEEVHSSAYDSDVMETDLVSDNDEDHQVEEQDNDEEDQEE ETALADLGGGWGRIIFPPVRRGRQVHMNICRPTNGDASEGSFDHEVITQSKNPTLHHQ ARRSFWGDLWPLGRNVTGSVS" CDS complement(join(29115348..29115748,29115895..29115986, 29116216..29116295,29116626..29116721,29116839..29116919, 29117038..29117118,29117396..29117479,29117663..29117760, 29118168..29118262,29118364..29118437,29118604..29118869, 29118972..29119104)) /locus_tag="TCM_015686" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002543" /codon_start=1 /product="Methyltransferases,copper ion binding isoform 1" /protein_id="EOY23953.1" /db_xref="TAIR:AT1G64600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GW63" /translation="MASLISETTQKIFTPESLRAAAKQSERCLDVPVRLRRAIKKYLR EQEDPYMRRKVLRLSESFSEIKDVNLHLTAETSKELVEDPLKSVEQSKRWKIKSAYGD IGLTYRDDETVAYVASRMPAVYSACYRVLGEVRRRLPGFSPTKVLDFGAGTGSAFWAI REVWPKTVEKINIVEPSQSMQRAGRSLIQGLKNLPLIHSYASLQTLTKDISKSEREHD LVIASYVLGEVPSLKDRITIVRQLWNLTRDVLVLVEPGTPHGSNIISQMRSHILWMEK RKCRKAKANKEGSKDLIDLRSGAFIIAPCPHDGCCPLEKSGKYCHFVQRLQRTSSQRA YKRSKGDPLRGFEDEKFCFVAFRRGQRPRRESWPLDGIKFETLKEQRAKRNPEDLEID YEDLVNIKETADVIPYEEVHSSAYDSDVMETDLVSDNDEDHQVEEQDNDEEDQEEETA LADLGGGWGRIIFPPVRRGRQVHMNICRPTNGDASEGSFDHEVITQSKNPTLHHQARR SFWGDLWPLGRNVTGSVS" mRNA complement(join(<29115516..29115748,29115895..29115986, 29116216..29116295,29116626..29116721,29116839..29116919, 29117038..29117118,29117396..29117479,29117663..29117760, 29118168..29118262,29118364..29118437,29118604..29118869, 29118972..29119007,29171288..29171342,29171443..29171547, 29171659..29171743,29172865..29173068,29173166..29173277, 29173385..29173508,29173616..29173686,29173789..29173867, 29173957..29174036,29174117..29174297)) /locus_tag="TCM_015686" /product="Methyltransferases,copper ion binding isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019613001" /inference="similar to AA sequence:ricco:30068.m002543" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00341t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8786t3" CDS complement(join(<29115516..29115748,29115895..29115986, 29116216..29116295,29116626..29116721,29116839..29116919, 29117038..29117118,29117396..29117479,29117663..29117760, 29118168..29118262,29118364..29118437,29118604..29118869, 29118972..29119007,29171288..29171324)) /locus_tag="TCM_015686" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002543" /codon_start=1 /product="Methyltransferases,copper ion binding isoform 2" /protein_id="EOY23954.1" /db_xref="TAIR:AT1G64600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GW63" /translation="MQIVIFSTAINEVRLRRAIKKYLREQEDPYMRRKVLRLSESFSE IKDVNLHLTAETSKELVEDPLKSVEQSKRWKIKSAYGDIGLTYRDDETVAYVASRMPA VYSACYRVLGEVRRRLPGFSPTKVLDFGAGTGSAFWAIREVWPKTVEKINIVEPSQSM QRAGRSLIQGLKNLPLIHSYASLQTLTKDISKSEREHDLVIASYVLGEVPSLKDRITI VRQLWNLTRDVLVLVEPGTPHGSNIISQMRSHILWMEKRKCRKAKANKEGSKDLIDLR SGAFIIAPCPHDGCCPLEKSGKYCHFVQRLQRTSSQRAYKRSKGDPLRGFEDEKFCFV AFRRGQRPRRESWPLDGIKFETLKEQRAKRNPEDLEIDYEDLVNIKETADVIPYEEVH SSAYDSDVMETDLVSDNDEDHQVEEQDNDEEDQEEETALADLGGGWGRIIFPPVRRGR Q" gene 29117046..29174388 /locus_tag="TCM_015697" /note="dbxref CacaoGD:Thecc1EG015697" mRNA join(29117046..29117116,29117394..29117479, 29117663..29117759,29118167..29118261,29118363..29118435, 29118602..29118869,29118972..29119014,29171295..29171344, 29171445..29171550,29171662..29171743,29172865..29173069, 29173167..29173279,29173387..29173509,29173617..29173686, 29173789..29173867,29173957..29174038,29174119..29174297) /locus_tag="TCM_015697" /product="Myo-inositol oxygenase 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s13450.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037734t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s13450.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00341t00002; inference alignment:Newbler:10:TSA:cgbaP2_g00341t00002; inference alignment:Newbler:10:TSA:cgbaP1_g05224t00001" CDS join(29118989..29119014,29171295..29171344, 29171445..29171550,29171662..29171743,29172865..29173069, 29173167..29173279,29173387..29173509,29173617..29173686, 29173789..29173867,29173957..29174038,29174119..29174145) /locus_tag="TCM_015697" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037734t1" /codon_start=1 /product="Myo-inositol oxygenase 4 isoform 2" /protein_id="EOY23957.1" /db_xref="Phytozome:POPTR_0017s13450.1" /db_xref="TAIR:AT4G26260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1S0" /translation="MARRRRTGTIAVLKMTICIESPELTAATLGDEKKMQTDADKLAS KEEFAVPENNAFGKSFRDYEADGERKDIVEQHYKLSHINQTYDFVKRMREEYKKLDKA EMGIWECCELHNEVVDDSDPDLDEPQIQHLLQSAEAIRKDYPEEDWLHLTALIHDLGK ILVLPKFGGLPQWAVVGDTFPVGCAFDDSNVHHKYFKENPDFNNPNYNTKNGVYSEGC GLDNVLMSWGHDDYMYMVAKENGTTLPSAGSFIIRYHSFYPLHKHGAYTQLMNEEDKE NMKWLKIFNKYDLYSKSKVLVDVEEVKPYYESLIAKYFPAKLNW" mobile_element 29120915..29122047 /note="source:INTACT639F_F363_scaffold_5-int 7444 8582" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(29122384..29123871) /locus_tag="TCM_015687" /note="dbxref CacaoGD:Thecc1EG015687" mRNA complement(join(29122384..29122855,29122944..29123116, 29123241..29123871)) /locus_tag="TCM_015687" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400030604" /inference="similar to AA sequence:ricco:30054.m000806" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02174t00001_C1" CDS complement(join(29122732..29122855,29122944..29123116, 29123241..29123819)) /locus_tag="TCM_015687" /note="dbxref ricco:30054.m000806" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY23961.1" /db_xref="TAIR:AT4G17940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU40" /translation="MKAALLRAGSVPVPSPALCSSPKVSLSRQSSIGGIYSCERAGCS PCSPIISLHFPMNKRKPKETHTHMRRALSDTDIIRSESRIPGGSRCFRAGIPEEEYLS DGEVGREFRTLVTGKGSDRASFESIWPEFGISMEEIGFSGDGFGNGGKSGGDHGDDSF GDESKIGDYYREMLKLNPSDSLLLRNYGRFLHEVEKDMERAEEYYGRAILASPGDGEV LSLYGKFIWERHRDETRAKSYFDRAVAASPDDCMVLGSYAHFMWESEEDEEQEQEEKE MGAQVGVSPAMVAAF" mobile_element 29126021..29126128 /note="source:CACAO_LINE_E1735_scaffold_6 2 113" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(29126323..29126372) /note="source:CACAO_LINE_E_64_scaffold_2 727 776" /mobile_element_type="retrotransposon:LINE/L1" gene 29127398..29131377 /locus_tag="TCM_015688" /note="dbxref CacaoGD:Thecc1EG015688" mRNA join(29127398..29128876,29130458..29131377) /locus_tag="TCM_015688" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12780.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s12780.1" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8776t1" CDS join(29127523..29128876,29130458..29130474) /locus_tag="TCM_015688" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23962.1" /db_xref="Phytozome:POPTR_0003s12780.1" /translation="MFNLSRMNPTSNRNSCTSEIGLLRGQGFNHILCLKFILPLSTTL FYFSLRKKRHYFIIMATWSALPKSILIVVMKKLINLSDKIRFSSVCSSWRSVALQERF HLLRCAPPGFIIPGSPNNSCKARCFLPFTKIKLCNAGDTLVHNNLPLLSLPDKSQCCG SYQGWLVMVNPNLDMAMVDLVSGVRFRLPGVTTLPPVPQALALSKTHVFYSMSSVNKA FISSSPTCSVPSKCFFFVTYTRHHALAYCKLGDTTWSPLKSTDSVGKPFNGFTDAIYH KGQLYALHETEKIFTCELTAPSPEMTEFLASPHRFINKQCSKEVCYLVESGGELLLVY RRKDNTRTRIGYRTRMFEVYRLDFSLKKWIPVVSLGEYALFLGRSQSFSLSELKVGGI KRNHIYFMDDCIHADHYYKKDTGYDMGEFNLESSTIDFYPTSFRLPYQPGFWVTPALQ SSSQEP" mobile_element complement(29129225..29129313) /note="source:scaffold_4_CACTA_0482 6072 6164" /mobile_element_type="transposon:TIR/CACTA" gene 29133308..29136856 /locus_tag="TCM_015689" /note="dbxref CacaoGD:Thecc1EG015689" mRNA join(29133308..29133697,29133791..29134014, 29134769..29134960,29135811..29136145,29136471..29136856) /locus_tag="TCM_015689" /product="NAD(P)-binding Rossmann-fold superfamily protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G23910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025517t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09250.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9701t1" CDS join(29133571..29133697,29133791..29134014, 29134769..29134960,29135811..29136145,29136471..29136567) /locus_tag="TCM_015689" /note="paralog of Thecc1EG025517t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein, putative" /protein_id="EOY23963.1" /db_xref="Phytozome:POPTR_0003s09250.1" /db_xref="TAIR:AT2G23910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EB77" /translation="MAPASFHHEKVCVMDASGRLGSTLVERLLQRGYTVHAAVQGHGD LKFNGVAAGENKKLKVFRADPFDYQSIIDALKGCSGLFYAFEPPEDHLAYDVSNCVHS YVDLLHQISLEVPCSEFMAEVEVRAAHNVIEACAQTDTIDKVVFTSSATAVVWRDTPQ SVASDLDERHWSDENFCRKFKLWEALSKTLTEKTAWALAMDRGINMVSVNGGLLTGPH LSITNPYLKGAAEMYEAGTFVTVDLNFLVDAHICVFEDVSSYGRYLCFNHVINRHEDA VQLARLLTPSVPSPAQSYEEANMIIQQKLSNKKLNKLLVDFESEALET" mobile_element complement(29137261..29137387) /note="source:scaffold_4_CACTA_0483 1013 1155" /mobile_element_type="transposon:TIR/CACTA" gene 29137458..29140894 /locus_tag="TCM_015690" /note="dbxref CacaoGD:Thecc1EG015690" mRNA join(29137458..29137576,29137840..29137916, 29138629..29139369,29140258..29140894) /locus_tag="TCM_015690" /product="Nucleic acid binding protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02330.1" /inference="similar to AA sequence:ricco:30054.m000804" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9702t1" CDS join(29137563..29137576,29137840..29137916, 29138629..29139369,29140258..29140538) /locus_tag="TCM_015690" /note="dbxref ricco:30054.m000804" /codon_start=1 /product="Nucleic acid binding protein, putative" /protein_id="EOY23964.1" /db_xref="TAIR:AT1G32360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SNT2" /translation="MYHISFFPRKLQKENHFEEKERTKHTEKRKDPSVWATEEDYRVW NNQETSTDTPSNSSYDQRQPQSRSNSEQPPNKKSRNSQELNSRSKAIGKMFFKTKLCC KFRAGTCPYVTNCNFAHSIEELRRPPPNWQEIVAAHEEEKGILSEPREEFQIPSLGSS SFSGETQRSYKGRHCKKFYTEEGCPYGDNCTFLHDEQSKNRESVAISLGPGGYGGGGG GAAAAGGGGGGGGGGGGAAAAGNGSNSKPSNWKTRICNKWELTGYCPFGNKCHFAHGV AELHRYGGGLVEAEAKDSSATPSDPKQGGVPSKTPADTVAVSAPSVPLSDVYHLGVPS QRTSLVIQRPGQRAHQKWKGPDKISRIYGDWIDDIE" gene 29141563..29142908 /locus_tag="TCM_015691" /note="dbxref CacaoGD:Thecc1EG015691" mRNA 29141563..29142908 /locus_tag="TCM_015691" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30054.m000818" /inference="similar to AA sequence:ricco:30054.m000818" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc9812t1" CDS 29141757..29142635 /locus_tag="TCM_015691" /note="dbxref ricco:30054.m000818" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY23965.1" /db_xref="TAIR:AT4G17920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU36" /translation="MSTYSPYAQSPSSNYNPPVPIIIAIIFVLLFFFGFFAIYFFRCF VHNLVVLWNRRRNPSGALVGTAGANMSNGLDPELIQAFPTFSYSSVKEFRREKYGLEC TICLGEFSDEDMLRLLTICCHVFHKECVDLWLESHKTCPVCRGELDVPRKSLEKSPIL VQTNSMHEIGANQSSVQDAVCIDIKEDNNEEVDGGEAEAQASSNTGEQHHKERDQMER FSRSHSTGHSIVRTTEEEDRYTPKLLDHVKTKIVRGHKSAGSCIAFGDFSSPLDYKNR SFGEASETGRADMDKV" gene complement(29142969..29147212) /locus_tag="TCM_015692" /note="dbxref CacaoGD:Thecc1EG015692" mRNA complement(join(29142969..29143264,29143349..29143451, 29143539..29143616,29143691..29143760,29144357..29144452, 29144774..29144910,29145002..29145180,29145266..29145458, 29145694..29145726,29145809..29145919,29146049..29146166, 29146690..29147212)) /locus_tag="TCM_015692" /product="ATPase family associated with various cellular activities (AAA)" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400003205.2" /inference="similar to AA sequence:Phytozome:POPTR_0003s09220.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5487t1" CDS complement(join(29143107..29143264,29143349..29143451, 29143539..29143616,29143691..29143760,29144357..29144452, 29144774..29144910,29145002..29145180,29145266..29145458, 29145694..29145726,29145809..29145919,29146049..29146166, 29146690..29146727)) /locus_tag="TCM_015692" /codon_start=1 /product="ATPase family associated with various cellular activities (AAA)" /protein_id="EOY23966.1" /db_xref="Phytozome:POPTR_0003s09220.1" /db_xref="TAIR:AT5G27740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZ90" /translation="MLVPKSFPDDLRCCQGRDSQKQRKFTWAKKYQPKALKDFICHRE IAEKVETLVTVGDAKHVIIDGFPGIGKRTMALALLRENFGLDILETREQVQALDLESV LKRGLTSSIQITVQASAKHIEVDLSESDIRGYATEVALLIIKETHNALTKQPPLQHNL ENAKAIVFHQAEKLSKNAQPQIRRFLENSKGQYKVIFCCSDICKLQILTPLCRVIHLP PPPNKEIVGVLNFIAKQEDIELPHTLAQTIAENSNHCLRQAIRSLEATWLADYPFNEG QSIMTGWEDELAIMAKSIIEEQSLNMLFLVRKKFIRLMEHHICREFVLGTLVAELKKH VLDSQTQLDLESLYQEISKPNEDFSAELSYKDEVVGNRIRKLSRFSFATIEVDPHGTK HYLFPLTEFVAKFMSYYKIKRVQSVSSLTGANATHQKQCSQKGPS" gene 29147438..29153176 /locus_tag="TCM_015693" /note="dbxref CacaoGD:Thecc1EG015693" mRNA join(29147438..29147701,29147806..29147869, 29147941..29147986,29148129..29148262,29148351..29148424, 29148561..29148633,29148750..29148839,29149126..29149202, 29149406..29149496,29149853..29149979,29150070..29150174, 29150629..29150758,29150870..29150921,29151010..29151054, 29151525..29152053,29152163..29153176) /locus_tag="TCM_015693" /product="GPI-anchored wall transfer protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013143001" /inference="similar to AA sequence:Phytozome:GSVIVT01013143001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:PASA:2:TSA:puevd3b015165t1a4; alternateUTRof:Thecc1EG015693t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8824t3" mRNA join(29147438..29147701,29147806..29147869, 29147941..29147986,29148129..29148262,29148351..29148424, 29148561..29148633,29148750..29148839,29149126..29149202, 29149406..29149496,29149853..29149979,29150070..29150174, 29150629..29150758,29150870..29150921,29151010..29151054, 29151591..29151713,29151955..29152053,29152163..29153176) /locus_tag="TCM_015693" /product="GPI-anchored wall transfer protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013143001" /inference="similar to AA sequence:Phytozome:GSVIVT01013143001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00563t00001" mRNA join(29147438..29147701,29147806..29147869, 29147941..29147986,29148129..29148262,29148351..29148424, 29148561..29148633,29148750..29148839,29149126..29149202, 29149406..29149496,29149853..29149979,29150070..29150174, 29150629..29150758,29150870..29150921,29151010..29151054, 29151955..29152053,29152163..29153176) /locus_tag="TCM_015693" /product="GPI-anchored wall transfer protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013143001" /inference="similar to AA sequence:Phytozome:GSVIVT01013143001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:PASA:2:TSA:puevd3b015165t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00563t00001" mRNA join(29147438..29147701,29147806..29147869, 29147941..29147986,29148129..29148262,29148351..29148424, 29148561..29148633,29149126..29149202,29149406..29149496, 29149853..29149979,29150070..29150174,29150629..29150758, 29150870..29150921,29151010..29151054,29151955..29152053, 29152163..29153176) /locus_tag="TCM_015693" /product="GPI-anchored wall transfer protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013143001" /inference="similar to AA sequence:Phytozome:GSVIVT01013143001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:PASA:2:TSA:puevd3b015165t1a3; inference alignment:Newbler:10:TSA:cgbaB_g00563t00001" mRNA join(29147516..29147701,29147806..29147869, 29147941..29147986,29148129..29148262,29148351..29148424, 29148561..29148633,29148750..29148839,29149126..29149202, 29149406..29149496,29149853..29149979,29150070..29150174, 29150629..29150758,29150870..29150921,29151010..29151054, 29151525..29151713,29151955..29152053,29152163..29152589) /locus_tag="TCM_015693" /product="GPI-anchored wall transfer protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013143001" /inference="similar to AA sequence:Phytozome:GSVIVT01013143001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8824t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8824t3; inference alignment:Newbler:10:TSA:cgbaB_g00563t00001" mRNA join(29147564..29147701,29147806..29147869, 29147941..29147986,29148351..29148424,29148561..29148633, 29148750..29148839,29149126..29149202,29149406..29149496, 29149853..29149979,29150070..29150174,29150629..29150758, 29150870..29150921,29151010..29151054,29151955..29152053, 29152163..>29152284) /locus_tag="TCM_015693" /product="GPI-anchored wall transfer protein, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013143001" /inference="similar to AA sequence:Phytozome:GSVIVT01013143001" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00563t00003; inference alignment:Newbler:10:TSA:cgbaB_g00563t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8824t3" CDS join(29147652..29147701,29147806..29147869, 29147941..29147986,29148129..29148262,29148351..29148424, 29148561..29148633,29148750..29148839,29149126..29149202, 29149406..29149496,29149853..29149979,29150070..29150174, 29150629..29150758,29150870..29150921,29151010..29151054, 29151591..29151713,29151955..29152053,29152163..29152315) /locus_tag="TCM_015693" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="GPI-anchored wall transfer protein isoform 1" /protein_id="EOY23967.1" /db_xref="Phytozome:GSVIVT01013143001" /db_xref="TAIR:AT4G17910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZ89" /translation="MDSLPRSFNANKHLKEQFVSNLTGSSMLEISALLTTVPILVLLR QSICFQALTDGDTKETSLKKNDTAIVAFKNLKAYLATLVMDFVFIVLPTLLLFTVLAE WIYVWMILLSLLLIFVIAGKRSPHSPYLEGPKSFRMSISSYRVAMMFVTCLCILAVDF RIFPREFAKTETYGTSLMDLGVGSFVLVNSIVSRQARNVSSSMDWWKAALKSTSPLLL LGFARLVSTMSVDYQVHVGEYGVHWNFFFTLAGVSILTSTVNVPSKYSGILGSVILVG YQSWLSSGLNVYLLSNKRGMDIISRNKEGIFSIFGYWGMYLIGVQVGYYLFFGNHSSV MLRSNNGTRIRVWLLSILFWILTVLLDRHVERISRRMCNLPYVTWVLAQNLQESQNQV STMTWIEIFQSKLSTFVLHRSLKRRTSLFRNLLPKLLAILMLSDYVPGSKMSALEKAF DRNLLASFLLANVLTGLVNLFVDTLFASSVSALLILISYALTLSVVMGIVDFYGVRLK FW" CDS join(29147652..29147701,29147806..29147869, 29147941..29147986,29148129..29148262,29148351..29148424, 29148561..29148633,29148750..29148839,29149126..29149202, 29149406..29149496,29149853..29149979,29150070..29150174, 29150629..29150758,29150870..29150921,29151010..29151054, 29151955..29152053,29152163..29152315) /locus_tag="TCM_015693" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="GPI-anchored wall transfer protein isoform 4" /protein_id="EOY23970.1" /db_xref="Phytozome:GSVIVT01013143001" /db_xref="TAIR:AT4G17910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZ89" /translation="MDSLPRSFNANKHLKEQFVSNLTGSSMLEISALLTTVPILVLLR QSICFQALTDGDTKETSLKKNDTAIVAFKNLKAYLATLVMDFVFIVLPTLLLFTVLAE WIYVWMILLSLLLIFVIAGKRSPHSPYLEGPKSFRMSISSYRVAMMFVTCLCILAVDF RIFPREFAKTETYGTSLMDLGVGSFVLVNSIVSRQARNVSSSMDWWKAALKSTSPLLL LGFARLVSTMSVDYQVHVGEYGVHWNFFFTLAGVSILTSTVNVPSKYSGILGSVILVG YQSWLSSGLNVYLLSNKRGMDIISRNKEGIFSIFGYWGMYLIGVQVGYYLFFGNHSSV MLRSNNGTRIRVWLLSILFWILTVLLDRHVERISRRMCNLPYVTWVLAQNLQLLAILM LSDYVPGSKMSALEKAFDRNLLASFLLANVLTGLVNLFVDTLFASSVSALLILISYAL TLSVVMGIVDFYGVRLKFW" CDS join(29147652..29147701,29147806..29147869, 29147941..29147986,29148129..29148262,29148351..29148424, 29148561..29148633,29149126..29149202,29149406..29149496, 29149853..29149979,29150070..29150174,29150629..29150758, 29150870..29150921,29151010..29151054,29151955..29152053, 29152163..29152315) /locus_tag="TCM_015693" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="GPI-anchored wall transfer protein isoform 5" /protein_id="EOY23971.1" /db_xref="Phytozome:GSVIVT01013143001" /db_xref="TAIR:AT4G17910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZ89" /translation="MDSLPRSFNANKHLKEQFVSNLTGSSMLEISALLTTVPILVLLR QSICFQALTDGDTKETSLKKNDTAIVAFKNLKAYLATLVMDFVFIVLPTLLLFTVLAE WIYVWMILLSLLLIFVIAGKRSPHSPYLEGPKSFRMSISSYRVAMMDLGVGSFVLVNS IVSRQARNVSSSMDWWKAALKSTSPLLLLGFARLVSTMSVDYQVHVGEYGVHWNFFFT LAGVSILTSTVNVPSKYSGILGSVILVGYQSWLSSGLNVYLLSNKRGMDIISRNKEGI FSIFGYWGMYLIGVQVGYYLFFGNHSSVMLRSNNGTRIRVWLLSILFWILTVLLDRHV ERISRRMCNLPYVTWVLAQNLQLLAILMLSDYVPGSKMSALEKAFDRNLLASFLLANV LTGLVNLFVDTLFASSVSALLILISYALTLSVVMGIVDFYGVRLKFW" CDS join(29147652..29147701,29147806..29147869, 29147941..29147986,29148129..29148262,29148351..29148424, 29148561..29148633,29148750..29148839,29149126..29149202, 29149406..29149496,29149853..29149979,29150070..29150174, 29150629..29150758,29150870..29150921,29151010..29151054, 29151525..29151533) /locus_tag="TCM_015693" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="GPI-anchored wall transfer protein isoform 2" /protein_id="EOY23968.1" /db_xref="Phytozome:GSVIVT01013143001" /db_xref="TAIR:AT4G17910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZ89" /translation="MDSLPRSFNANKHLKEQFVSNLTGSSMLEISALLTTVPILVLLR QSICFQALTDGDTKETSLKKNDTAIVAFKNLKAYLATLVMDFVFIVLPTLLLFTVLAE WIYVWMILLSLLLIFVIAGKRSPHSPYLEGPKSFRMSISSYRVAMMFVTCLCILAVDF RIFPREFAKTETYGTSLMDLGVGSFVLVNSIVSRQARNVSSSMDWWKAALKSTSPLLL LGFARLVSTMSVDYQVHVGEYGVHWNFFFTLAGVSILTSTVNVPSKYSGILGSVILVG YQSWLSSGLNVYLLSNKRGMDIISRNKEGIFSIFGYWGMYLIGVQVGYYLFFGNHSSV MLRSNNGTRIRVWLLSILFWILTVLLDRHVERISRRMCNLPYVTWVLAQNLQKW" CDS join(29147652..29147701,29147806..29147869, 29147941..29147986,29148129..29148262,29148351..29148424, 29148561..29148633,29148750..29148839,29149126..29149202, 29149406..29149496,29149853..29149979,29150070..29150174, 29150629..29150758,29150870..29150921,29151010..29151054, 29151525..29151533) /locus_tag="TCM_015693" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="GPI-anchored wall transfer protein isoform 2" /protein_id="EOY23969.1" /db_xref="Phytozome:GSVIVT01013143001" /db_xref="TAIR:AT4G17910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZ89" /translation="MDSLPRSFNANKHLKEQFVSNLTGSSMLEISALLTTVPILVLLR QSICFQALTDGDTKETSLKKNDTAIVAFKNLKAYLATLVMDFVFIVLPTLLLFTVLAE WIYVWMILLSLLLIFVIAGKRSPHSPYLEGPKSFRMSISSYRVAMMFVTCLCILAVDF RIFPREFAKTETYGTSLMDLGVGSFVLVNSIVSRQARNVSSSMDWWKAALKSTSPLLL LGFARLVSTMSVDYQVHVGEYGVHWNFFFTLAGVSILTSTVNVPSKYSGILGSVILVG YQSWLSSGLNVYLLSNKRGMDIISRNKEGIFSIFGYWGMYLIGVQVGYYLFFGNHSSV MLRSNNGTRIRVWLLSILFWILTVLLDRHVERISRRMCNLPYVTWVLAQNLQKW" CDS join(29148378..29148424,29148561..29148633, 29148750..29148839,29149126..29149202,29149406..29149496, 29149853..29149979,29150070..29150174,29150629..29150758, 29150870..29150921,29151010..29151054,29151955..29152053, 29152163..>29152282) /locus_tag="TCM_015693" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="GPI-anchored wall transfer protein, putative isoform 6" /protein_id="EOY23972.1" /db_xref="Phytozome:GSVIVT01013143001" /db_xref="TAIR:AT4G17910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S6K9" /translation="MILLSLLLIFVIAGKRSPHSPYLEGPKSFRMSISSYRVAMMFVT CLCILAVDFRIFPREFAKTETYGTSLMDLGVGSFVLVNSIVSRQARNVSSSMDWWKAA LKSTSPLLLLGFARLVSTMSVDYQVHVGEYGVHWNFFFTLAGVSILTSTVNVPSKYSG ILGSVILVGYQSWLSSGLNVYLLSNKRGMDIISRNKEGIFSIFGYWGMYLIGVQVGYY LFFGNHSSVMLRSNNGTRIRVWLLSILFWILTVLLDRHVERISRRMCNLPYVTWVLAQ NLQLLAILMLSDYVPGSKMSALEKAFDRNLLASFLLANVLTGLVNLFVDTLFASSVSA LLILISYALTLSVVMGIV" gene 29154256..29157185 /locus_tag="TCM_015694" /note="dbxref CacaoGD:Thecc1EG015694" mRNA join(29154256..29155019,29155633..29156052, 29156615..29157185) /locus_tag="TCM_015694" /product="Basic helix-loop-helix DNA-binding superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034439t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09200.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9706t1" CDS join(29154624..29155019,29155633..29156052, 29156615..29156713) /locus_tag="TCM_015694" /note="paralog of Thecc1EG034439t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein" /protein_id="EOY23973.1" /db_xref="Phytozome:POPTR_0003s09200.1" /db_xref="TAIR:AT5G46690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SNU7" /translation="MALETLSSNELLNFIIYDTISATPYSSHDSLVTDFSLENGFSIS QEQASSLNCFPLVTPQCRSTGVEAADRRPNLAVQGRKKRRRKPRVCKNKEEAETQRMT HIAVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQTLEAQK LQVLQQVRPASEGTTNSKLLPPPPPPPFAQFFMFPQYTWSQIPSKFTSKTKASIADIE VTLIETHANLRILSRKGPRHLSKLVAGFQSLCLSILHLSVTTMYPLVLYSISAKVEEG CQLSSVDDIAGAVHHMLRIIEEDETALC" mobile_element complement(29159078..29159141) /note="source:scaffold_4_CACTA_0483 1105 1170" /mobile_element_type="transposon:TIR/CACTA" gene complement(29159673..29162302) /locus_tag="TCM_015695" /note="dbxref CacaoGD:Thecc1EG015695" mRNA complement(join(29159673..29161486,29162193..29162302)) /locus_tag="TCM_015695" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025688t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02360.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15266t00001" CDS complement(29160103..29161215) /locus_tag="TCM_015695" /note="paralog of Thecc1EG025688t1" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY23974.1" /db_xref="Phytozome:POPTR_0001s02360.1" /db_xref="TAIR:AT3G03550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZ88" /translation="MGSIGNPRTWVPYMNTKDCSQGFCSLYCPQWCYIIFPPPPPIEF PDDDSGPNFSPLVIAIIGILASAFLLVSYYTIISKYCGNVDPSRRRENHDPGEVLEDN HSPSVHEPWQTSTTGLDEALIKSITVCKYKKGDGLIEGTDCSVCLSEFQEDESLRLLP KCSHAFHVHCIDTWLRSHSNCPLCRANIIFISASPLPLPPALTESPPGNESLQDRQPV TNEYAAAAQDSGRRSMQEVDRFQSDLSRLPKTPSRAFSDLGNAQGRDSVIEIREESYQ QMRRSVSMDHPCQSQLSVADILHMNQEEDSRVEECHFSSGIAGSSKQSAEGSKLSNKM RVLHCVMNPVAMKRSFSSGRFFLTRQGRVRDPAIPL" mobile_element 29164503..29164554 /note="source:CACAO_M_E24389_F60_scaffold_4 2801 2859" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29165696..29168429) /locus_tag="TCM_015696" /note="dbxref CacaoGD:Thecc1EG015696" mRNA complement(join(29165696..29166094,29167023..29167310, 29167826..29167924,29168045..29168429)) /locus_tag="TCM_015696" /product="RNA-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30054.m000821" /inference="similar to AA sequence:Phytozome:POPTR_0001s02370.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8817t1; inference alignment:Newbler:10:TSA:cgbaL_g11931t00001; inference alignment:Newbler:10:TSA:cgbaP1_g12824t00001" mRNA complement(join(29165852..29166094,29166284..29166487, 29167023..29167310,29167826..29167924,29168045..29168427)) /locus_tag="TCM_015696" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30054.m000821" /inference="similar to AA sequence:Phytozome:GSVIVT01013146001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11931t00001; inference alignment:Newbler:10:TSA:cgbaL_g11931t00001" CDS complement(join(29166089..29166094,29167023..29167310, 29167826..29167924,29168045..29168398)) /locus_tag="TCM_015696" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 2" /protein_id="EOY23976.1" /db_xref="Phytozome:POPTR_0001s02370.1" /db_xref="TAIR:AT2G35410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU33" /translation="MAAVEAVAGLSFSRCPSSSSKSLLCPKPTRLSCLISGISKSASI LSHSFFISSLTNSRKKPGFLLCSTVQEVNVEAETEKTQKSNVKRKLFVLNLPWSYTVA DIKDLFGQCGNVTDVEIIKQKDGRSRNFAFVTMASGEEAQAAVDKLDSHEVSARIIRV EFARRFKKPSPSPQPIVPPRETHHKLYVSNLAWKVRSSHLREFFSAFNPVAARVIFGT PSGQSAGYGFVSFATKEEADAAISTLNGKI" CDS complement(join(29166383..29166487,29167023..29167310, 29167826..29167924,29168045..29168398)) /locus_tag="TCM_015696" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY23975.1" /db_xref="Phytozome:GSVIVT01013146001" /db_xref="TAIR:AT2G35410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU33" /translation="MAAVEAVAGLSFSRCPSSSSKSLLCPKPTRLSCLISGISKSASI LSHSFFISSLTNSRKKPGFLLCSTVQEVNVEAETEKTQKSNVKRKLFVLNLPWSYTVA DIKDLFGQCGNVTDVEIIKQKDGRSRNFAFVTMASGEEAQAAVDKLDSHEVSARIIRV EFARRFKKPSPSPQPIVPPRETHHKLYVSNLAWKVRSSHLREFFSAFNPVAARVIFGT PSGQSAGYGFVSFATKEEADAAISTLNGKELMDRPLRLKFSERNVDESGGEKKEEKER EGQTD" mRNA join(29170808..29171344,29171445..29171550, 29171662..29171743,29172865..29173069,29173167..29173279, 29173387..29173509,29173617..29173686,29173789..29173867, 29173957..29174038,29174119..29174388) /locus_tag="TCM_015697" /product="Myo-inositol oxygenase 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s13450.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037734t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s13450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05224t00001" mRNA join(29171033..29171344,29172662..29173069, 29173167..29173279,29173387..29173509,29173617..29173686, 29173789..29173867,29173957..29174038,29174119..29174307) /locus_tag="TCM_015697" /product="Myo-inositol oxygenase 5 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s13450.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037734t1" /inference="similar to AA sequence:Phytozome:Glyma05g36100.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3005t7; inference alignment:Newbler:10:TSA:cgbaP1_g05224t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00341t00002" CDS join(29171311..29171344,29171445..29171550, 29171662..29171743,29172865..29173069,29173167..29173279, 29173387..29173509,29173617..29173686,29173789..29173867, 29173957..29174038,29174119..29174145) /locus_tag="TCM_015697" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037734t1" /codon_start=1 /product="Myo-inositol oxygenase 4 isoform 1" /protein_id="EOY23956.1" /db_xref="Phytozome:POPTR_0017s13450.1" /db_xref="TAIR:AT4G26260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1S0" /translation="MTICIESPELTAATLGDEKKMQTDADKLASKEEFAVPENNAFGK SFRDYEADGERKDIVEQHYKLSHINQTYDFVKRMREEYKKLDKAEMGIWECCELHNEV VDDSDPDLDEPQIQHLLQSAEAIRKDYPEEDWLHLTALIHDLGKILVLPKFGGLPQWA VVGDTFPVGCAFDDSNVHHKYFKENPDFNNPNYNTKNGVYSEGCGLDNVLMSWGHDDY MYMVAKENGTTLPSAGSFIIRYHSFYPLHKHGAYTQLMNEEDKENMKWLKIFNKYDLY SKSKVLVDVEEVKPYYESLIAKYFPAKLNW" mRNA join(29171319..29171344,29171445..29171550, 29171662..29171743,29172865..29173069,29173167..29173279, 29173387..29173509,29173617..29173686,29173789..29173867, 29173957..29174038,29174129..29174307) /locus_tag="TCM_015697" /product="Myo-inositol oxygenase 4 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s13450.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037734t1" /inference="similar to AA sequence:Phytozome:Glyma05g36100.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3005t2; inference alignment:Newbler:10:TSA:cgbaP1_g05224t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00341t00002" mRNA join(29171319..29171344,29171445..29171550, 29171662..29171743,29172865..29173069,29173167..29173279, 29173387..29173509,29173617..29173686,29173789..29173867, 29173975..29174038,29174119..29174307) /locus_tag="TCM_015697" /product="Myo-inositol oxygenase 4 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s13450.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037734t1" /inference="similar to AA sequence:Phytozome:Glyma05g36100.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3005t3; inference alignment:Newbler:10:TSA:cgbaP1_g05224t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00341t00002" CDS join(29171471..29171550,29171662..29171743, 29172865..29173069,29173167..29173279,29173387..29173509, 29173617..29173686,29173789..29173867,29173975..29174038, 29174119..29174145) /locus_tag="TCM_015697" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG037734t1" /codon_start=1 /product="Myo-inositol oxygenase 4 isoform 4" /protein_id="EOY23959.1" /db_xref="Phytozome:Glyma05g36100.2" /db_xref="TAIR:AT4G26260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1S0" /translation="MQTDADKLASKEEFAVPENNAFGKSFRDYEADGERKDIVEQHYK LSHINQTYDFVKRMREEYKKLDKAEMGIWECCELHNEVVDDSDPDLDEPQIQHLLQSA EAIRKDYPEEDWLHLTALIHDLGKILVLPKFGGLPQWAVVGDTFPVGCAFDDSNVHHK YFKENPDFNNPNYNTKNGVYSEGCGLDNVLMSWGHDDYMYMVAKENGTTLPSAGSFII RYHSFYPLHKHGAYTQLMNEEDKENMKWLKIFNKSKVLVDVEEVKPYYESLIAKYFPA KLNW" CDS join(29171471..29171550,29171662..29171743, 29172865..29173069,29173167..29173279,29173387..29173509, 29173617..29173686,29173789..29173867,29173957..29174038, 29174129..29174137) /locus_tag="TCM_015697" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037734t1" /codon_start=1 /product="Myo-inositol oxygenase 4 isoform 3" /protein_id="EOY23958.1" /db_xref="Phytozome:Glyma05g36100.1" /db_xref="TAIR:AT4G26260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1S0" /translation="MQTDADKLASKEEFAVPENNAFGKSFRDYEADGERKDIVEQHYK LSHINQTYDFVKRMREEYKKLDKAEMGIWECCELHNEVVDDSDPDLDEPQIQHLLQSA EAIRKDYPEEDWLHLTALIHDLGKILVLPKFGGLPQWAVVGDTFPVGCAFDDSNVHHK YFKENPDFNNPNYNTKNGVYSEGCGLDNVLMSWGHDDYMYMVAKENGTTLPSAGSFII RYHSFYPLHKHGAYTQLMNEEDKENMKWLKIFNKYDLYSKSKVLVDVEEVKPYYESLI AKQS" mobile_element complement(29171706..29171819) /note="source:CACAO_M_E58230_F143_scaffold_9 1676 1783" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29171767..29171829) /note="source:CACAO_Again_on_E207_scaffold_9 1018 1080" /mobile_element_type="transposon:TIR/hAT" CDS join(29172874..29173069,29173167..29173279, 29173387..29173509,29173617..29173686,29173789..29173867, 29173957..29174038,29174119..29174145) /locus_tag="TCM_015697" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG037734t1" /codon_start=1 /product="Myo-inositol oxygenase 5 isoform 5" /protein_id="EOY23960.1" /db_xref="Phytozome:Glyma05g36100.1" /db_xref="TAIR:AT5G56640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1S0" /translation="MREEYKKLDKAEMGIWECCELHNEVVDDSDPDLDEPQIQHLLQS AEAIRKDYPEEDWLHLTALIHDLGKILVLPKFGGLPQWAVVGDTFPVGCAFDDSNVHH KYFKENPDFNNPNYNTKNGVYSEGCGLDNVLMSWGHDDYMYMVAKENGTTLPSAGSFI IRYHSFYPLHKHGAYTQLMNEEDKENMKWLKIFNKYDLYSKSKVLVDVEEVKPYYESL IAKYFPAKLNW" gene 29175014..29176670 /locus_tag="TCM_015698" /note="dbxref CacaoGD:Thecc1EG015698" mRNA join(29175014..29175578,29176134..29176670) /locus_tag="TCM_015698" /product="Tetraspanin family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015699t1" /inference="similar to AA sequence:frave:gene02193" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10224t00001" CDS join(29175081..29175578,29176134..29176445) /locus_tag="TCM_015698" /note="dbxref frave:gene02193; paralog of Thecc1EG015699t1" /codon_start=1 /product="Tetraspanin family protein" /protein_id="EOY23977.1" /db_xref="TAIR:AT5G46700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZ87" /translation="MALSNNVIGAINFVAMLLSIPIIGAGIWLANQPDNSCVKILQWP VIVLGVLILVVAIAGFIGGFWRIPWLLIAYLVGMLILIILLACLVVFIYMVTIRGSGH LAPSRAYLEYHLEDFSGWLQRRVRSSYKWERIKVCLSSTEMCAQLNQSYTMAIDFFNA HLTPIESGCCKPPTECGYTFVNPTNWISPINNIADPDCIQWNNDQTQLCYNCNSCKAG LLANLKEEWRKADIILLITLIALICVYLIGCCAFRNAKTEDIFRRYKQGYT" gene 29177277..29178896 /locus_tag="TCM_015699" /note="dbxref CacaoGD:Thecc1EG015699" mRNA join(29177277..29178089,29178286..29178896) /locus_tag="TCM_015699" /product="Tetraspanin family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g017780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015698t1" /inference="similar to AA sequence:frave:gene02193" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8808t1" CDS join(29177451..29178089,29178286..29178606) /locus_tag="TCM_015699" /note="dbxref frave:gene02193; paralog of Thecc1EG015698t1" /codon_start=1 /product="Tetraspanin family protein, putative" /protein_id="EOY23978.1" /db_xref="TAIR:AT5G46700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZ87" /translation="MIVNIFFIIFARIFLQSKLFHFLFIIRSHSQATKPSPERSSQNP VTKMAASNTIVGTINFITLLLSIPIIGAGIWLANEPDNSCVKILQWPLIILGISISVV ALLGFVGGCWRITWLLIVYLVAMFILIVLFACLVVLIYLVTNKGSGHPAPGRTYLEHD LDDFSGWLRRKVASPYKWNRIRACLNSTDMCSELNQRYRIAQDFFNARLTSIQYGCCM PPAECGYTYINPTYWLTPNNTAASMDCLQWSNDQMQLCFHCDSCKAGLLANLTKEWRS VDIILLITLVVLICVYLIGFCCALRKSKPGDGDTSPRRNKENT" gene 29181242..29182574 /locus_tag="TCM_015700" /note="dbxref CacaoGD:Thecc1EG015700" mRNA join(29181242..29181520,29181656..29182574) /locus_tag="TCM_015700" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" CDS join(29181428..29181520,29181656..29181805) /locus_tag="TCM_015700" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23979.1" /translation="MDKHPKFTKQVGVPKLIKVFLTSELTNILTKPLVGQIMPPEPYP IMPRVTQQKLKANPYPNNETRWTVVQNHMQFQRSLL" gene complement(29187996..29190628) /locus_tag="TCM_015701" /note="dbxref CacaoGD:Thecc1EG015701" mRNA complement(join(29187996..29188738,29189165..29189380, 29190145..29190342,29190502..29190628)) /locus_tag="TCM_015701" /product="PLATZ transcription factor family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g02180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025548t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013149001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9640t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9640t2" mRNA complement(join(29188486..29188738,29189165..29189380, 29190145..29190504)) /locus_tag="TCM_015701" /product="PLATZ transcription factor family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g02180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025548t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400031173" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1773t15; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1773t6; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9640t2" CDS complement(join(29188487..29188738,29189165..29189380, 29190145..29190342,29190502..29190504)) /locus_tag="TCM_015701" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025548t1" /codon_start=1 /product="PLATZ transcription factor family protein isoform 1" /protein_id="EOY23980.1" /db_xref="Phytozome:GSVIVT01013149001" /db_xref="TAIR:AT4G17900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LPJ4" /translation="MGAGGPDEEDNRWPPWLKPLLREQFFVQCKLHVDSHKSECNMYC LDCMNGALCSFCLSYHKDHRYIQIRRSSYHDVIRVSEIQKYLDISGVQTYVINSAKVV FLNERPQPRPGKGVTNTCEVCDRSLVDSFRFCSLGCKIVGTSKNFQKKKRHLAMASDS EDSYSSSSHGKLKNSNKENNISNKVQSFSPSTPPPTSVNYRTAKRRKGIPHRAPMGGL IIEY" CDS complement(join(29188487..29188738,29189165..29189380, 29190145..29190222)) /locus_tag="TCM_015701" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025548t1" /codon_start=1 /product="PLATZ transcription factor family protein isoform 2" /protein_id="EOY23981.1" /db_xref="Phytozome:PGSC0003DMP400031173" /db_xref="TAIR:AT4G17900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LPJ4" /translation="MYCLDCMNGALCSFCLSYHKDHRYIQIRRSSYHDVIRVSEIQKY LDISGVQTYVINSAKVVFLNERPQPRPGKGVTNTCEVCDRSLVDSFRFCSLGCKIVGT SKNFQKKKRHLAMASDSEDSYSSSSHGKLKNSNKENNISNKVQSFSPSTPPPTSVNYR TAKRRKGIPHRAPMGGLIIEY" mobile_element complement(29194606..29194674) /note="source:CACAO_M_E44503_F22_scaffold_6 6086 6147" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29198820..29199898) /locus_tag="TCM_015702" /note="dbxref CacaoGD:Thecc1EG015702" mRNA complement(29198820..29199898) /locus_tag="TCM_015702" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" mobile_element 29199028..29199141 /note="source:CACAO_PIF_E144_scaffold_10 3538 3658" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS complement(29199414..29199851) /locus_tag="TCM_015702" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23982.1" /translation="MAWKQRPTCRFCKAIDAHDPGIRCQCEENFQSSDLYVFLTFTLI VVSYSAFVLTGIHVDENYGARNRPHFVLHLDSCSVIDFRVMENQLVANWTAAFVLINK KNDIEISIEPFDLLVFYKRTSLVSCASMAEPLVLKTKYQAVSP" mobile_element complement(29201020..29201046) /note="source:CACAO_M_E1149_F297_scaffold_1 1090 1130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29201047..29201139) /note="source:scaffold_3_CACTA_0382 1865 1965" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29201120..29201168 /note="source:INTACT39F_F22_scaffold_1-int 5731 5779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29201140..29201161) /note="source:CACAO_M_E1149_F297_scaffold_1 1054 1089" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29205127..29206428 /locus_tag="TCM_015703" /note="dbxref CacaoGD:Thecc1EG015703" mRNA 29205127..29206428 /locus_tag="TCM_015703" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400030629" /inference="similar to AA sequence:Phytozome:POPTR_0003s09150.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08453t00001" CDS 29205397..29206056 /locus_tag="TCM_015703" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23983.1" /db_xref="Phytozome:POPTR_0003s09150.1" /db_xref="TAIR:AT1G32690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2M1" /translation="MAFYVDEEEVWKCPKHPSRRRRSGICPVCLRDKLASLCPECAHA RPCACSATTSSSSSSSSLSRFSAAAAGDMPGVGSVGRVSNLIEGEPAFRRSRSLAIPF LRSKPESLSEKNDLAGIKSKTPSFWSMFRASNKSKRHESEDHQREGEKERIVAEEERR RMMRKSRSVAVTSHSGIGDLKSSPSTKGKGWYFPSPMKVFRQTRVSKLVFQERSPLYR G" gene 29207009..29210540 /locus_tag="TCM_015704" /note="dbxref CacaoGD:Thecc1EG015704" mRNA join(29207009..29207482,29209712..29210540) /locus_tag="TCM_015704" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.37 coverage" mobile_element complement(29207546..29207586) /note="source:CACAO_on_E565_scaffold_5 1330 1370" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS 29209735..29210124 /locus_tag="TCM_015704" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23984.1" /translation="MEKHKEGWKVGRVKRILILGFLTRGDLRSWILFNPKGQKTGKGC STVSYIQIAMVAAIAFDKLPNRAGQMLKRLWRQAASRPPSQVELVLRILTREARLTHS LYSQDHLPQFSNVDNIIKKTSSTCYDC" gene 29213577..29214260 /locus_tag="TCM_015705" /note="dbxref CacaoGD:Thecc1EG015705" mRNA 29213577..29214260 /locus_tag="TCM_015705" /product="AIG2-like (avirulence induced gene) family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene10490" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025549t1" /inference="similar to AA sequence:ricco:30054.m000827" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9637t1" CDS 29213670..29214182 /locus_tag="TCM_015705" /note="dbxref ricco:30054.m000827; paralog of Thecc1EG025549t1" /codon_start=1 /product="AIG2-like (avirulence induced gene) family protein, putative" /protein_id="EOY23985.1" /db_xref="TAIR:AT5G46720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2M2" /translation="MAEAKQALIFTYGTLKHGHGNHYLIEDLIRQKDSVFLGAHVTHQ PHPLVIGPYGIPYLINLPGHGHRVKGELYSVSTRGLARLDELEGTSIGHYERLPIQVY EEEKGGVSVAAEAYFAHRDFGERLWERRGKVGLNEFGEKEGKGYVSRDIRPQESSIIH DITSFVTINE" gene 29218196..29220290 /locus_tag="TCM_015706" /note="dbxref CacaoGD:Thecc1EG015706" mRNA join(29218196..29219541,29219951..29220290) /locus_tag="TCM_015706" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is medium, express is medium, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03777t00001" mRNA join(29218205..29219212,29219294..29219760) /locus_tag="TCM_015706" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9244t1; inference alignment:Newbler:10:TSA:cgbaL_g03777t00001" CDS 29218226..29219509 /locus_tag="TCM_015706" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY23986.1" /translation="MAIKTLFGVVLFLLLGVGICSATRALLTFDEVASHLPGVGHGGG TVSVHGASLIGGGGGGSGGGSGSAYADVGGAIGYGGGSGGGSGEGSGAGYGGVGGHGG GGGNGGGGGSAGGAPGYGSGGGEGGGAGSGAGYGGASGHGGGGGNGGGGGSAGGASGY GSGGGEGGGAGSGAGFGGAGGHGGGGGNGGGGGSAGGAFGYGSGGGEGGGAGNGAGYG GGGGGNGGGGGSVGGASGYGSGGGAGSGVGNGGAGGHGGGGGNGGGGGNAGGASGYGS GGGEGGGAGSGAGYGGAGGHGGGGGGGGGNGGGGGSAGGASGYGSGGGEGAGSGYGAG GVGSGGGGGGGGGGGGSGGGGEGYGAGGAHGGGYGSGEGVGGGSGGGASGHGGGGGSG GGGGGGYGAGGAHGGGYGNGSGGGKGGGYGDGYYP" CDS join(29218226..29219212,29219294..29219509) /locus_tag="TCM_015706" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY23987.1" /translation="MAIKTLFGVVLFLLLGVGICSATRALLTFDEVASHLPGVGHGGG TVSVHGASLIGGGGGGSGGGSGSAYADVGGAIGYGGGSGGGSGEGSGAGYGGVGGHGG GGGNGGGGGSAGGAPGYGSGGGEGGGAGSGAGYGGASGHGGGGGNGGGGGSAGGASGY GSGGGEGGGAGSGAGFGGAGGHGGGGGNGGGGGSAGGAFGYGSGGGEGGGAGNGAGYG GGGGGNGGGGGSVGGASGYGSGGGAGSGVGNGGAGGHGGGGGNGGGGGNAGGASGYGS GGGEGGGAGSGAGYGGAGGHGGGGGGGGGNGGGGGSAGGASGYGSGGGEGAGSGYGAG GAHGGGYGSGEGVGGGSGGGASGHGGGGGSGGGGGGGYGAGGAHGGGYGNGSGGGKGG GYGDGYYP" gene 29222662..29224797 /locus_tag="TCM_015708" /note="dbxref CacaoGD:Thecc1EG015708" mRNA 29222662..29224797 /locus_tag="TCM_015708" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc7267t6" CDS 29222827..29224179 /locus_tag="TCM_015708" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23988.1" /translation="MVCLAGVPVLLHCGVSTYSFTCASATFYANRTLFLPINTHLLSH SEPRSLWDSKIIPMGTHKVLGAVFFLLLGVGICSAARALLTFDEIVGHIPRGGYGASH GGGSGYGAGGAEGYGGRGGSGGGSGGGYGAVGEHGGGGGYGSGTGSGEGGGGGYGGIG GHGGGGGGGSGGGAGYAGEGEHGIGYRSGGGEGGGSGYGGAGGFGGAGGHGGGGGGGN GGGSAYGARGEHGAGYGSGSGSGSGYGEGSGAGYGAAGGHGGGGGIGGGTGYGIGGEH GAGYGTGGGEGGGSGYGAGGEHGAGYGGGHGGGSGGGYGGGEEHGAIGGGGYGPGGEH AGGYGGGHGSGAGRGAGYGAGGAHGGGYGGGGGAGGGFAGGGGGGGTGYGAGGAHGGG YGSGGGSGGGYGSGAGYGGGGGSGGGGGYAGGGEHGGGYGGGGGSGGGAGGGHGGYAP " gene complement(29225698..29226957) /locus_tag="TCM_015709" /note="dbxref CacaoGD:Thecc1EG015709" mRNA complement(join(29225698..29226140,29226236..29226333, 29226437..29226573,29226655..29226957)) /locus_tag="TCM_015709" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29692.m000545" /inference="similar to AA sequence:frave:gene10497" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3613t1" CDS complement(join(29225900..29226140,29226236..29226333, 29226437..29226573,29226655..29226910)) /locus_tag="TCM_015709" /note="dbxref frave:gene10497" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23989.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU28" /translation="MVLFVRSRGKRNYPSLPTFMGKKKGSKLANELSSPGSANVPKHA VIVMDGLKEFTTELLEWVLENIIASGHIVTLLGFMPWLNIPLFSKTWQDVWMLEFEHL SLIKEKNEWKNDAKYLKLQAVLDLCRKHGVVPQKEIVMGYPLPLLVVERIISLRATWV VFDSNRELRKNREFFAEKIPCNMVMMSEEGDMDMIKGRPMIDSGEHTPSDQSPGSLAP TPLVIYSEPLKRILEEKELDIDDDD" gene complement(29227196..29231481) /locus_tag="TCM_015710" /note="dbxref CacaoGD:Thecc1EG015710" mRNA complement(join(29227196..29227976,29228061..29228637, 29229004..29229126,29229337..29229675,29229825..29229997, 29230315..29230425,29230505..29230625,29230712..29231481)) /locus_tag="TCM_015710" /product="Ubiquitin-specific protease 20, putative" /inference="alignment:exonerate- protein:2:ricco:30054.m000829" /inference="similar to AA sequence:Phytozome:POPTR_0001s02420.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2486t5" CDS complement(join(29227708..29227976,29228061..29228637, 29229004..29229126,29229337..29229675,29229825..29229997, 29230315..29230425,29230505..29230625,29230712..29231281)) /locus_tag="TCM_015710" /codon_start=1 /product="Ubiquitin-specific protease 20, putative" /protein_id="EOY23990.1" /db_xref="Phytozome:POPTR_0001s02420.1" /db_xref="TAIR:AT5G46740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU27" /translation="METRPFCSKTLRSDAPSPSESFLSQENLDGLSPVLPSMADSLSG SSPVSQMALDSLDIQTLIEDVIDEGTVANPRLSESLSTNDVFSLTSPPPSPSSTDSEP SQPLALVPYDPQKPVNYQEKEEDPCRWDFSNCSSSDKGRNMASDQFYSRRENEFRDPG YGYSAWAPWSSRPLSPPKEASRNGREPTGVGAGLENLGNTCFINAVLQCFTHTVPFVL GLRSLNHEKPCARSVESFCLLCALHDHIELSLNSSGGIVSPSKIFDNLNYISSFLYRY EQEDAHEFLQCLLDRLGSCCSDSKPKNNCLSSSDDCLVKKVFGGRLVSQLCCCNCGYI SYSYEPLNDLSLEIENVDTLPSALESFTKVEKIEDQGAKFRCENCKEEVAVEKQLMLD QAPSVATFHLKRFKTESGYVEKIDKHVFFPLELDLQPYTIVNQSSNEELKYQLYAVVK HSGFTPTSGHYVSYIRSSPNTWHKLNDSRVTRVEEEVVLSQEAYILFYARQGIPWFST AIEVQKPCADPGISDSSPKSVLDNMEMECPSDPHVKSRADCGANESKDIPARTSTQFS GETHHEVEADNLHVAVEGISGSPPNESEFHVSKSIDFIDDNPMTSASMPPGPSSCSDG FDKNISNVSHHGENNCNQGVDEVPNNNSLPLMPSRSLRLDKCQRDSSECVPRSHLKDE NRGIHRRAVNRTAVDQGRTEAMRYAKRMPTARGAKFMALLAPQTVGKMKKKAGSSSCK RVSPRCRNNHSLMHPVPVSR" gene 29231849..29234493 /locus_tag="TCM_015711" /note="dbxref CacaoGD:Thecc1EG015711" mRNA join(29231849..29232477,29232979..29233128, 29233270..29233584,29233765..29234493) /locus_tag="TCM_015711" /product="DNA-directed RNA polymerase I subunit rpa49, putative" /inference="alignment:exonerate- protein:2:ricco:29706.m001322" /inference="similar to AA sequence:Phytozome:POPTR_0001s20580.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06227t00001" CDS join(29231983..29232477,29232979..29233128, 29233270..29233584,29233765..29234178) /locus_tag="TCM_015711" /codon_start=1 /product="DNA-directed RNA polymerase I subunit rpa49, putative" /protein_id="EOY23991.1" /db_xref="Phytozome:POPTR_0001s20580.1" /db_xref="TAIR:AT3G13940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1A8" /translation="MEEQEPPSTKSRSKKSKKRNREGKLQQPIEPMSQNLGAKKENFQ VKIQLFQDQPNKIPPLVAYFPSGYNPCKTDPQTRQGEEEEEEEEEGPDNKSNQPRVKV YRNMAQRKTNRLQVVVSPSGSNVDFVGSNYSGEAAAAQVCRYSLGVLDRETRTLKIIP IASNKIFRLEPRVRSSETANKDVSSSVKSELTTEDKEDKMGELTALYGTKKDRKKRKD LNNLKKEVDPESQKSLDEKIEQVAFNKEALGNTSALVARNIPPHDSSATTPVEAYPLD KIILKGDWEFLGDIYGLLEVGAEVASNAYPTFVCNRINKLEGIQDETEKRKLSCVFSF ITHLVKFNDQFSMDRVASAKGHKIPSIIRQRFFTMFTDPGLRKPSRDQINLLISYVLV LTLHADGFRTDPSDIAKDLRMSSIGLRPHFENLGCKLVRENNSIFTTLPVPLKFPSET LKRQRKR" gene complement(29234500..29239077) /locus_tag="TCM_015712" /note="dbxref CacaoGD:Thecc1EG015712" mRNA complement(join(29234500..29235258,29235426..29235524, 29235937..29236062,29236602..29236862,29237000..29237432, 29238419..29238537,29238657..29239077)) /locus_tag="TCM_015712" /product="ADP-ribosylation factor GTPase-activating protein AGD8" /inference="alignment:exonerate- protein:2:TAIR:AT5G46750.1" /inference="similar to AA sequence:ricco:30054.m000830" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00295t00001_C1" CDS complement(join(29235151..29235258,29235426..29235524, 29235937..29236062,29236602..29236862,29237000..29237432, 29238419..29238537,29238657..29238728)) /locus_tag="TCM_015712" /note="dbxref ricco:30054.m000830" /codon_start=1 /product="ADP-ribosylation factor GTPase-activating protein AGD8" /protein_id="EOY23992.1" /db_xref="TAIR:AT4G17890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H100" /translation="MASSDSLSDKNAVFRKLKAKSENKMCFDCNAKNPTWASVTYGIF LCIDCSAVHRSLGVHISFVRSTNLDSWSLEQLRMMVFGGNNRAQVFFKQHGWTDGGKI EAKYTSRAADLYRQILSKEVAKSMAEEAGLPSSPVASQSSQTSNGLLDSKTDEAPKEN SLGRQETPEVSATPKASHSVVTSTVKKPLGAKKTGKTGGLGARKLTTKPSENLYDQKP EEPVVPVASSTNNTAPVGSSFPSRFEYVENVQSTELNSGGPQVLSHVAPPKSSNFFAD FGMDSGFQKKSSSNSSKVQIQETDEARRKFSNAKSISSAQFFGDPARSADADAQVSLQ KFSGSTAISSADLFGHGADNSLDLAASDLINRLSFQAQQDISNLKNIAGETGKKLSSL ASTLITDLQDRIL" mobile_element complement(29239826..29240382) /note="source:INTACT135F_F90_scaffold_2-int 13374 13996" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(29240383..29241078) /note="source:scaffold_2_CACTA_0244 13495 14697" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29241263..29242148) /note="source:scaffold_9_CACTA_0932 2788 3612" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29241494..29242150) /note="source:INTACT135F_F90_scaffold_2-int 12864 13514" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(29242181..29242354) /note="source:CACAO_on_SSS_E94_scaffold_6 1 188" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(29242354..29242550) /note="source:CACAO_on_E373_scaffold_1 473 660" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 29242390..29243025 /note="source:scaffold_4_CACTA_0483 2 657" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29245308..29246177) /note="source:CACAO_on_E49_scaffold_7 2 856" /mobile_element_type="transposon:TIR/hAT" mobile_element 29247619..29247678 /note="source:scaffold_10_CACTA_0130 1151 1210" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29247679..29247695) /note="source:CACAO_M_S_E6245_F266_scaffold_2 1026 1114" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29248259..29249555 /locus_tag="TCM_015713" /note="dbxref CacaoGD:Thecc1EG015713" mRNA join(29248259..29248577,29249046..29249555) /locus_tag="TCM_015713" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(29248447..29248577,29249046..29249127) /locus_tag="TCM_015713" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23993.1" /translation="MKLNPAPEIKQIFSYCGAPTPWKISSNGDNQLRRPTPAIQRRFK RMGVPPRWKKMGEALSNSTKMTDTAA" gene 29256636..29261094 /locus_tag="TCM_015714" /note="dbxref CacaoGD:Thecc1EG015714" mRNA join(29256636..29259234,29260825..29261094) /locus_tag="TCM_015714" /product="Basic helix-loop-helix DNA-binding family protein" /inference="alignment:exonerate-protein:2:frave:gene10501" /inference="similar to AA sequence:ricco:29827.m002528" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04436t00001" CDS 29256659..29258668 /locus_tag="TCM_015714" /note="dbxref ricco:29827.m002528" /codon_start=1 /product="Basic helix-loop-helix DNA-binding family protein" /protein_id="EOY23994.1" /db_xref="TAIR:AT1G32640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU24" /translation="MTDYRLATAINLWTDDNASVMEAFMSSDLSALWPPPQSSGSTSA PAAAAGPDPSKSSLAQSQPSVSLLNQETLQQRLQALIEGARENWTYAIFWQSSYDYSG TAVLGWGDGYYKGEEDKGKGKLKASSSTAAEQEHRKKVLRELNSLISGSTSPTDDAVD EEVTDTEWFFLVSMTQSFVNGGGLPGQAFFNSSPVWVAGSDRLATSICERARQGQVFG LQTMVCIPSANGVVELGSTELITQSSDLMNKVRVLFNFNNGIEAGSWSMSNNTADQGE NDPSSLWINDPNNGIELKESNNNSNNNNTSHQNQQIQKSIQFCDNPSSSSLTENPSSI HVGNHQQQQNHQQGHSFCLNFSDYGFDGSSSVRNGNSSSHLLKPESGEILNFGESKRS GNGNLFSGNSQIGVEENKKKRSPTSRGSNEEGMLSFTSGVILPSSGVVKSSGGAGDSD HSDLEASVVKEADSSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYA LRAVVPNVSKMDKASLLGDAISYINELRTKLQNADSEKEELQKELEAMKKELSSKDSR SAPPAPDQDLKMSNHLGNKLVELEIDVKIIGWDAMIRIQCNKKNHPAARLMAALKELD LDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRIALTSKFGDAR" gene complement(29259066..29259990) /locus_tag="TCM_015715" /note="dbxref CacaoGD:Thecc1EG015715" mRNA complement(29259066..29259990) /locus_tag="TCM_015715" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.90 coverage" CDS complement(29259220..29259438) /locus_tag="TCM_015715" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23995.1" /translation="MKNKNVKRLDIRRALFTKNGSKHVNAQGNARNITSKNGKSMWRK EQRTPKNEVNLSNKSSECPLVYTNLKKH" mobile_element 29260076..29260177 /note="source:scaffold_4_CACTA_0511 5705 5799" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29260097..29260183) /note="source:scaffold_1_CACTA_0016 6349 6434" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29260184..29260342) /note="source:MITE_CACTA_5 1 156" /mobile_element_type="transposon:TIR/MITE" gene complement(29262697..29264161) /locus_tag="TCM_015716" /note="dbxref CacaoGD:Thecc1EG015716" mRNA complement(29262697..29264161) /locus_tag="TCM_015716" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29827.m002529" /inference="similar to AA sequence:ricco:29827.m002529" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage" CDS complement(29263577..29263933) /locus_tag="TCM_015716" /note="dbxref ricco:29827.m002529" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23996.1" /translation="MSLNCLTCQVLQRTDSNKDRDYGKEKDSRKFCCIRVDRSWSGNL SPAAYEQIRNEPMPVPTRKGHRRLNTIDTTFGAVAFEADGEPRLVRSCGMRRDWSFED LRGTRDEKMRKEMRVR" gene complement(29265192..29267531) /locus_tag="TCM_015717" /note="dbxref CacaoGD:Thecc1EG015717" mRNA complement(join(29265192..29265933,29267528..29267531)) /locus_tag="TCM_015717" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02470.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02470.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc663t2" CDS complement(29265239..29265748) /locus_tag="TCM_015717" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY23997.1" /db_xref="Phytozome:POPTR_0001s02470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU22" /translation="MEDGLNMNPSGTQASLVTNTNTKSYNDIMTRRLKNRERQRRYRA RKRLEADMQKSHVLNQPTIPPVGLQLNGIRNNGTARVHCKRDWKKDARRAHICKGQED ALHTSVQSTLILTAESQTPCLPSGIRAEGSLERECHSENSHNVANCETRKLKLGRRDW KADARNKKS" gene 29270857..29273425 /locus_tag="TCM_015718" /note="dbxref CacaoGD:Thecc1EG015718" mRNA join(29270857..29271045,29271561..29273318) /locus_tag="TCM_015718" /product="VQ motif-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30076.m004566" /inference="similar to AA sequence:ricco:30076.m004566" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc285t2; alternateUTRof:Thecc1EG015718t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc285t3" mRNA join(29270870..29271045,29271312..29271429, 29271748..29273425) /locus_tag="TCM_015718" /product="VQ motif-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30076.m004566" /inference="similar to AA sequence:ricco:30076.m004566" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc285t3" mRNA join(29270881..29271045,29271312..29273305) /locus_tag="TCM_015718" /product="VQ motif-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30076.m004566" /inference="similar to AA sequence:ricco:30076.m004566" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8897t1; alternateUTRof:Thecc1EG015718t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc285t3" CDS 29271769..29272779 /locus_tag="TCM_015718" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30076.m004566" /codon_start=1 /product="VQ motif-containing protein isoform 1" /protein_id="EOY23998.1" /db_xref="TAIR:AT2G35230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2M9" /translation="MDNSKNRHNDHLGVNKIGKNIKKSPLHQPNFANNAARQQPQPQV YNISKNDFRNIVQQLTGSPSQDPLPRPPQNPPKPQSMRLQRIRPPPLTPINRPHIPPP VPVPVPAPAHVPALVPPPAPYNNSLVRPGHYGPPSPAMLHPMMPGDVIWGNTAESPIS AYMRYLQTSLIDPSPVGNQVQPQLYPPVPGQPQALPPSSGLLPNPPMPVLPSPRGVNG PVPPMPNIPSPRMKGPVPSMPNLPSPRMNGPPLLPSPTSQFLLPSPTGYMNLLSPRSP YPLLSPGVQFPPMTPNFAFSPMGQSGILGPGPQPPPSPGLVFPLSPSGFFPFPSPRWR DQ" CDS 29271769..29272779 /locus_tag="TCM_015718" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30076.m004566" /codon_start=1 /product="VQ motif-containing protein isoform 1" /protein_id="EOY23999.1" /db_xref="TAIR:AT2G35230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2M9" /translation="MDNSKNRHNDHLGVNKIGKNIKKSPLHQPNFANNAARQQPQPQV YNISKNDFRNIVQQLTGSPSQDPLPRPPQNPPKPQSMRLQRIRPPPLTPINRPHIPPP VPVPVPAPAHVPALVPPPAPYNNSLVRPGHYGPPSPAMLHPMMPGDVIWGNTAESPIS AYMRYLQTSLIDPSPVGNQVQPQLYPPVPGQPQALPPSSGLLPNPPMPVLPSPRGVNG PVPPMPNIPSPRMKGPVPSMPNLPSPRMNGPPLLPSPTSQFLLPSPTGYMNLLSPRSP YPLLSPGVQFPPMTPNFAFSPMGQSGILGPGPQPPPSPGLVFPLSPSGFFPFPSPRWR DQ" CDS 29271769..29272779 /locus_tag="TCM_015718" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30076.m004566" /codon_start=1 /product="VQ motif-containing protein isoform 1" /protein_id="EOY24000.1" /db_xref="TAIR:AT2G35230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2M9" /translation="MDNSKNRHNDHLGVNKIGKNIKKSPLHQPNFANNAARQQPQPQV YNISKNDFRNIVQQLTGSPSQDPLPRPPQNPPKPQSMRLQRIRPPPLTPINRPHIPPP VPVPVPAPAHVPALVPPPAPYNNSLVRPGHYGPPSPAMLHPMMPGDVIWGNTAESPIS AYMRYLQTSLIDPSPVGNQVQPQLYPPVPGQPQALPPSSGLLPNPPMPVLPSPRGVNG PVPPMPNIPSPRMKGPVPSMPNLPSPRMNGPPLLPSPTSQFLLPSPTGYMNLLSPRSP YPLLSPGVQFPPMTPNFAFSPMGQSGILGPGPQPPPSPGLVFPLSPSGFFPFPSPRWR DQ" mobile_element 29280295..29280323 /note="source:CACAO_M_E12463_F12_scaffold_3 4549 4582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29280324..29280370 /note="source:CACAO_on_SS_E42_scaffold_2 8457 8502" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(29280328..29280379) /note="source:CACAO_M_E14113_F106_scaffold_3 13789 13840" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29280380..29280390 /note="source:CACAO_Mariner_E25_scaffold_1 3196 3256" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(29280611..29281624) /locus_tag="TCM_015719" /note="dbxref CacaoGD:Thecc1EG015719" mRNA complement(29280611..29281624) /locus_tag="TCM_015719" /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29827.m002533" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037275t1" /inference="similar to AA sequence:ricco:29827.m002533" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9646t1" CDS complement(29280933..29281586) /locus_tag="TCM_015719" /note="dbxref ricco:29827.m002533; paralog of Thecc1EG037275t1" /codon_start=1 /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein" /protein_id="EOY24001.1" /db_xref="TAIR:AT4G17870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZS8" /translation="MADPKPEPSSSMPNPRPDSEPTTHHLTIPTGLTHDEFCDLIPSI TQFHTYSVGPGKCSSLLAQPIKAPHDVVWSVVRRFDKPQTYKHFIKSCAVKEGFRMVV GCTRDVNVISGLPAATSTERLDILDDDQQVTGFSIIGGEHRLRNYRSVTTVHGFQRDG RIWTTVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLATVTEGLARDGDGHKSQVM" gene complement(29283902..29286461) /locus_tag="TCM_015720" /note="dbxref CacaoGD:Thecc1EG015720" mRNA complement(join(29283902..29284148,29284978..29285160, 29285886..29286026,29286141..29286461)) /locus_tag="TCM_015720" /product="Microspore-specific promoter 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09040.1" /inference="similar to AA sequence:ricco:29827.m002534" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17633t00001" CDS complement(join(29283996..29284148,29284978..29285160, 29285886..29286026,29286141..29286209)) /locus_tag="TCM_015720" /note="dbxref ricco:29827.m002534" /codon_start=1 /product="Microspore-specific promoter 2, putative" /protein_id="EOY24002.1" /translation="MENGRRSYSSMPLASRLDHLDFIMKYLEGKRSLQKGMEKECMPL DLAMREAYFKGSLLDRVTSLEHRLFQLCLELESSSTSSTSTSTSGYASSSLGSRGQPI SRSLPTFINSNQAHKQAPHQVLFTRSEIQEESEAMLQKKKDSNPLKQQVGNKRGSKKE KVSKSGKKVSPKWSHWKILGC" gene complement(29286519..29290213) /locus_tag="TCM_015721" /note="dbxref CacaoGD:Thecc1EG015721" mRNA complement(join(29286519..29287329,29287578..29287969, 29289813..29289885,29289982..29290080)) /locus_tag="TCM_015721" /product="Mitochondrial substrate carrier family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29827.m002535" /inference="similar to AA sequence:ricco:29827.m002535" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03621t00001" mRNA complement(join(29286603..29287329,29287578..29287969, 29289813..29289885,29289982..29290213)) /locus_tag="TCM_015721" /product="Mitochondrial substrate carrier family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29827.m002535" /inference="similar to AA sequence:ricco:29827.m002535" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00165t00001; alternateUTRof:Thecc1EG015721t1; inference alignment:Newbler:10:TSA:cgbaP1_g03621t00001" CDS complement(join(29286828..29287329,29287578..29287969)) /locus_tag="TCM_015721" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29827.m002535" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 1" /protein_id="EOY24003.1" /db_xref="TAIR:AT5G46800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU19" /translation="MGDIAKDLTSGTVGGAAQLIVGHPFDTIKVKLQSQPAPLPGQPP KYAGAMDAVKQTLAAEGPRGLYKGMGAPLATVAAFNAVLFTARGQMEALLRSEPGAPL TVSQQVVCGAGAGVAVSFLACPTELIKCRLQAQSALADSSSAGVAVKYGGPMDVARHV LRSEGGIRGLFKGLVPTLAREVPGNAAMFGVYEALKQYMAGGPDTSKLGRGSLIVAGG LAGASFWFSVYPTDVVKSVIQVDDYKNPKYTGSINAIRRILASEGAKGLYKGFGPAMA RSVPANAACFLAYEVTRASLG" CDS complement(join(29286828..29287329,29287578..29287969)) /locus_tag="TCM_015721" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29827.m002535" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 1" /protein_id="EOY24004.1" /db_xref="TAIR:AT5G46800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU19" /translation="MGDIAKDLTSGTVGGAAQLIVGHPFDTIKVKLQSQPAPLPGQPP KYAGAMDAVKQTLAAEGPRGLYKGMGAPLATVAAFNAVLFTARGQMEALLRSEPGAPL TVSQQVVCGAGAGVAVSFLACPTELIKCRLQAQSALADSSSAGVAVKYGGPMDVARHV LRSEGGIRGLFKGLVPTLAREVPGNAAMFGVYEALKQYMAGGPDTSKLGRGSLIVAGG LAGASFWFSVYPTDVVKSVIQVDDYKNPKYTGSINAIRRILASEGAKGLYKGFGPAMA RSVPANAACFLAYEVTRASLG" gene 29292162..29293033 /locus_tag="TCM_015722" /note="dbxref CacaoGD:Thecc1EG015722" mRNA 29292162..29293033 /locus_tag="TCM_015722" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8886t1" CDS 29292238..29292663 /locus_tag="TCM_015722" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24005.1" /translation="MFLHALIFYSVFGYPRLILDLILPRVVTLMYCIFLLFVLLVVVA SGIISWRTNREIDQLEIGKRIPQIHTFNGEPYFKLRPKFPVIRRKKLQSPAIPTLMED VLSRCSGCEGTCDLCMECGGLPMSWHDEEDLHFLQDKME" mobile_element 29295324..29295671 /note="source:scaffold_1_CACTA_0008 11261 11651" /mobile_element_type="transposon:TIR/CACTA" gene complement(29296650..29304000) /locus_tag="TCM_015723" /note="dbxref CacaoGD:Thecc1EG015723" mRNA complement(join(29296650..29297675,29298110..29298453, 29298553..29298677,29298764..29298994,29299115..29299790, 29299897..29300312,29300472..29300557,29300990..29301244, 29301348..29302172,29302794..29302871,29303855..29303989)) /locus_tag="TCM_015723" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013164001" /inference="similar to AA sequence:Phytozome:GSVIVT01013164001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:PASA:2:TSA:puevd3b015195t1a3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc522t8" mRNA complement(join(29296650..29297407,29297528..29297687, 29298110..29298453,29298553..29298677,29298764..29298994, 29299115..29299790,29299897..29300312,29300472..29300557, 29300990..29301244,29301348..29302172,29302794..29302871, 29303855..29303989)) /locus_tag="TCM_015723" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013164001" /inference="similar to AA sequence:Phytozome:GSVIVT01013164001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:PASA:2:TSA:puevd3b015195t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc522t8" mRNA complement(join(29296650..29297687,29298110..29298453, 29298553..29298677,29298764..29298994,29299115..29299790, 29299897..29300312,29300472..29300557,29300990..29301244, 29301348..29302172,29302794..29302871,29303855..29303989)) /locus_tag="TCM_015723" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013164001" /inference="similar to AA sequence:Phytozome:GSVIVT01013164001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc522t8" CDS complement(join(29297043..29297675,29298110..29298453, 29298553..29298677,29298764..29298994,29299115..29299790, 29299897..29300312,29300472..29300557,29300990..29301244, 29301348..29302172,29302794..29302796)) /locus_tag="TCM_015723" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY24010.1" /db_xref="Phytozome:GSVIVT01013164001" /translation="MGSSNAEKGFSGGHSSSSKLGLKEESGTCNTCAPSCSPCLHSEQ VTSMATKTNGFSGEACKKKDSNCCSFNDADLSSPRVNSACNDRHHTSSETSQPLSACL SRESFSENAESEETLRDCNTSEGIKMIRKPNLCQNSADNCGSLKSSIFHDKVVSNQLE KQKELECHGDNIAFICGSDYVKTRGGGHNSDADKKNLSYRSASVDSFSETEKAVNAQP ASSCLVGSPCDEVDNNHPRRSNRSTNVSSQEILCCSNKSDLSEISSLRDSCAGASSAK GERSECSEEQVQSSFVRADALRIGSQIGDEHNSAESIQPETGINGGEQTAEVKSTTVV KDVNMEESTIVSRPYACSDGSDSLELEVKVCDICGDIGREELLAICSKCNDGAEHIYC MRVKMDNVPKSDWMCEECMLGKETEKQKQDKIEEGVGIFKKSNTLEPETKVEESEAYK VSSSRLFSFKRPAGGLQVVRKRPFETVLKSPSTSSSSSKTSMHQSGGNSSSTTLKTVC IPTESSIKSPKLSSQSQVLRGSLLKSKSFSAMSSKEDVQLLKEGGSRMQGFAKDTAAS DSKRGVLMMSKSMSLKNMRSYGVNNSNADSRLCPNFSHGEDLKRSRHAKGQHSTNTEK KLRLANSDSFLLVADKRIASPSNNSLRQSSSSSCHDLIAVKAHEISDNSLKISGHSAQ GGSASEEKKRVVNVRRHAAYSVEVVPATCTNQSNANVLPDEQPCLRDLSMFASSLHMP SWISAVPQLDYIWQGKFEIQRSGGLPFTCDGIQAHLSTCGSHKVVEVVQKLPQKLLLE EVPRLSMWPTQFMKSHATEDNIALYFFAKDLNSYERSYENLLDRMIKNEVSLKGNFGG VDLLIFTSNLLPEKSRRWNNLLFLWGVFGGKGVHCLGKIPGMSASENLLPPGKSSESI SASLVSYNTQQTLNSITLLDSQAVTSGRMVEVCETKASWEQKPPDLQTSCSQPMGRVD GEMENEQFSRADSSQRQERDSKRRPEIDLNNSLQESEEYAEDCTEADGRNDCKRLKSC FSGMDIGNNNIKDINERCSIAINGKVPSIPAEFKCDGAYDMSIFSPELDSLGDKNRWK SLQQQVVSNDSGNRLDSSVSSLELKLGVERSPSDQGIMPPFFMLMGSKGLHEGNSDRE TSGDTNPSLALSLALPYPKKGGVLKLDSEMQVPKCPEVNTTLSLFGVSSDS" CDS complement(join(29297043..29297407,29297528..29297687, 29298110..29298453,29298553..29298677,29298764..29298994, 29299115..29299790,29299897..29300312,29300472..29300557, 29300990..29301244,29301348..29302172,29302794..29302796)) /locus_tag="TCM_015723" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY24008.1" /db_xref="Phytozome:GSVIVT01013164001" /translation="MGSSNAEKGFSGGHSSSSKLGLKEESGTCNTCAPSCSPCLHSEQ VTSMATKTNGFSGEACKKKDSNCCSFNDADLSSPRVNSACNDRHHTSSETSQPLSACL SRESFSENAESEETLRDCNTSEGIKMIRKPNLCQNSADNCGSLKSSIFHDKVVSNQLE KQKELECHGDNIAFICGSDYVKTRGGGHNSDADKKNLSYRSASVDSFSETEKAVNAQP ASSCLVGSPCDEVDNNHPRRSNRSTNVSSQEILCCSNKSDLSEISSLRDSCAGASSAK GERSECSEEQVQSSFVRADALRIGSQIGDEHNSAESIQPETGINGGEQTAEVKSTTVV KDVNMEESTIVSRPYACSDGSDSLELEVKVCDICGDIGREELLAICSKCNDGAEHIYC MRVKMDNVPKSDWMCEECMLGKETEKQKQDKIEEGVGIFKKSNTLEPETKVEESEAYK VSSSRLFSFKRPAGGLQVVRKRPFETVLKSPSTSSSSSKTSMHQSGGNSSSTTLKTVC IPTESSIKSPKLSSQSQVLRGSLLKSKSFSAMSSKEDVQLLKEGGSRMQGFAKDTAAS DSKRGVLMMSKSMSLKNMRSYGVNNSNADSRLCPNFSHGEDLKRSRHAKGQHSTNTEK KLRLANSDSFLLVADKRIASPSNNSLRQSSSSSCHDLIAVKAHEISDNSLKISGHSAQ GGSASEEKKRVVNVRRHAAYSVEVVPATCTNQSNANVLPDEQPCLRDLSMFASSLHMP SWISAVPQLDYIWQGKFEIQRSGGLPFTCDGIQAHLSTCGSHKVVEVVQKLPQKLLLE EVPRLSMWPTQFMKSHATEDNIALYFFAKDLNSYERSYENLLDRMIKNEVSLKGNFGG VDLLIFTSNLLPEKSRRWNNLLFLWGVFGGKGVHCLGKIPGMSASENLLPPGKSSESI SASLVSYNTQQTLNSITLLDSQAVTSGRMVEVCETKASWEQKPPDLQTSCSQPMGRVD GEMENEQFSRADSSQCFLQRQERDSKRRPEIDLNNSLQESEEYAEDCTEADGRNDCKR LKSCFSGMDIELDSLGDKNRWKSLQQQVVSNDSGNRLDSSVSSLELKLGVERSPSDQG IMPPFFMLMGSKGLHEGNSDRETSGDTNPSLALSLALPYPKKGGVLKLDSEMQVPKCP EVNTTLSLFGVSSDS" CDS complement(join(29297043..29297687,29298110..29298453, 29298553..29298677,29298764..29298994,29299115..29299790, 29299897..29300312,29300472..29300557,29300990..29301244, 29301348..29302172,29302794..29302796)) /locus_tag="TCM_015723" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24006.1" /db_xref="Phytozome:GSVIVT01013164001" /translation="MGSSNAEKGFSGGHSSSSKLGLKEESGTCNTCAPSCSPCLHSEQ VTSMATKTNGFSGEACKKKDSNCCSFNDADLSSPRVNSACNDRHHTSSETSQPLSACL SRESFSENAESEETLRDCNTSEGIKMIRKPNLCQNSADNCGSLKSSIFHDKVVSNQLE KQKELECHGDNIAFICGSDYVKTRGGGHNSDADKKNLSYRSASVDSFSETEKAVNAQP ASSCLVGSPCDEVDNNHPRRSNRSTNVSSQEILCCSNKSDLSEISSLRDSCAGASSAK GERSECSEEQVQSSFVRADALRIGSQIGDEHNSAESIQPETGINGGEQTAEVKSTTVV KDVNMEESTIVSRPYACSDGSDSLELEVKVCDICGDIGREELLAICSKCNDGAEHIYC MRVKMDNVPKSDWMCEECMLGKETEKQKQDKIEEGVGIFKKSNTLEPETKVEESEAYK VSSSRLFSFKRPAGGLQVVRKRPFETVLKSPSTSSSSSKTSMHQSGGNSSSTTLKTVC IPTESSIKSPKLSSQSQVLRGSLLKSKSFSAMSSKEDVQLLKEGGSRMQGFAKDTAAS DSKRGVLMMSKSMSLKNMRSYGVNNSNADSRLCPNFSHGEDLKRSRHAKGQHSTNTEK KLRLANSDSFLLVADKRIASPSNNSLRQSSSSSCHDLIAVKAHEISDNSLKISGHSAQ GGSASEEKKRVVNVRRHAAYSVEVVPATCTNQSNANVLPDEQPCLRDLSMFASSLHMP SWISAVPQLDYIWQGKFEIQRSGGLPFTCDGIQAHLSTCGSHKVVEVVQKLPQKLLLE EVPRLSMWPTQFMKSHATEDNIALYFFAKDLNSYERSYENLLDRMIKNEVSLKGNFGG VDLLIFTSNLLPEKSRRWNNLLFLWGVFGGKGVHCLGKIPGMSASENLLPPGKSSESI SASLVSYNTQQTLNSITLLDSQAVTSGRMVEVCETKASWEQKPPDLQTSCSQPMGRVD GEMENEQFSRADSSQCFLQRQERDSKRRPEIDLNNSLQESEEYAEDCTEADGRNDCKR LKSCFSGMDIGNNNIKDINERCSIAINGKVPSIPAEFKCDGAYDMSIFSPELDSLGDK NRWKSLQQQVVSNDSGNRLDSSVSSLELKLGVERSPSDQGIMPPFFMLMGSKGLHEGN SDRETSGDTNPSLALSLALPYPKKGGVLKLDSEMQVPKCPEVNTTLSLFGVSSDS" mRNA complement(join(<29297384..29297407,29297528..29297675, 29298110..29298453,29298553..29298677,29298764..29298994, 29299115..29299790,29299897..29300312,29300472..29300557, 29300990..29301244,29301348..29302172,29302794..29302871, 29303855..29304000)) /locus_tag="TCM_015723" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013164001" /inference="similar to AA sequence:Phytozome:GSVIVT01013164001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc522t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc522t8" mRNA complement(join(<29297384..29297407,29297528..29297687, 29298110..29298453,29298553..29298677,29298764..29298994, 29299115..29299790,29299897..29300312,29300472..29300557, 29300990..29301244,29301348..29302172,29302794..29302871, 29303825..29304000)) /locus_tag="TCM_015723" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013164001" /inference="similar to AA sequence:Phytozome:GSVIVT01013164001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc522t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc522t8" CDS complement(join(<29297385..29297407,29297528..29297675, 29298110..29298453,29298553..29298677,29298764..29298994, 29299115..29299790,29299897..29300312,29300472..29300557, 29300990..29301244,29301348..29302172,29302794..29302796)) /locus_tag="TCM_015723" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY24009.1" /db_xref="Phytozome:GSVIVT01013164001" /translation="MGSSNAEKGFSGGHSSSSKLGLKEESGTCNTCAPSCSPCLHSEQ VTSMATKTNGFSGEACKKKDSNCCSFNDADLSSPRVNSACNDRHHTSSETSQPLSACL SRESFSENAESEETLRDCNTSEGIKMIRKPNLCQNSADNCGSLKSSIFHDKVVSNQLE KQKELECHGDNIAFICGSDYVKTRGGGHNSDADKKNLSYRSASVDSFSETEKAVNAQP ASSCLVGSPCDEVDNNHPRRSNRSTNVSSQEILCCSNKSDLSEISSLRDSCAGASSAK GERSECSEEQVQSSFVRADALRIGSQIGDEHNSAESIQPETGINGGEQTAEVKSTTVV KDVNMEESTIVSRPYACSDGSDSLELEVKVCDICGDIGREELLAICSKCNDGAEHIYC MRVKMDNVPKSDWMCEECMLGKETEKQKQDKIEEGVGIFKKSNTLEPETKVEESEAYK VSSSRLFSFKRPAGGLQVVRKRPFETVLKSPSTSSSSSKTSMHQSGGNSSSTTLKTVC IPTESSIKSPKLSSQSQVLRGSLLKSKSFSAMSSKEDVQLLKEGGSRMQGFAKDTAAS DSKRGVLMMSKSMSLKNMRSYGVNNSNADSRLCPNFSHGEDLKRSRHAKGQHSTNTEK KLRLANSDSFLLVADKRIASPSNNSLRQSSSSSCHDLIAVKAHEISDNSLKISGHSAQ GGSASEEKKRVVNVRRHAAYSVEVVPATCTNQSNANVLPDEQPCLRDLSMFASSLHMP SWISAVPQLDYIWQGKFEIQRSGGLPFTCDGIQAHLSTCGSHKVVEVVQKLPQKLLLE EVPRLSMWPTQFMKSHATEDNIALYFFAKDLNSYERSYENLLDRMIKNEVSLKGNFGG VDLLIFTSNLLPEKSRRWNNLLFLWGVFGGKGVHCLGKIPGMSASENLLPPGKSSESI SASLVSYNTQQTLNSITLLDSQAVTSGRMVEVCETKASWEQKPPDLQTSCSQPMGRVD GEMENEQFSRADSSQRQERDSKRRPEIDLNNSLQESEEYAEDCTEADGRNDCKRLKSC FSGMDIELDSLGDK" CDS complement(join(<29297385..29297407,29297528..29297687, 29298110..29298453,29298553..29298677,29298764..29298994, 29299115..29299790,29299897..29300312,29300472..29300557, 29300990..29301244,29301348..29302172,29302794..29302796)) /locus_tag="TCM_015723" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24007.1" /db_xref="Phytozome:GSVIVT01013164001" /translation="MGSSNAEKGFSGGHSSSSKLGLKEESGTCNTCAPSCSPCLHSEQ VTSMATKTNGFSGEACKKKDSNCCSFNDADLSSPRVNSACNDRHHTSSETSQPLSACL SRESFSENAESEETLRDCNTSEGIKMIRKPNLCQNSADNCGSLKSSIFHDKVVSNQLE KQKELECHGDNIAFICGSDYVKTRGGGHNSDADKKNLSYRSASVDSFSETEKAVNAQP ASSCLVGSPCDEVDNNHPRRSNRSTNVSSQEILCCSNKSDLSEISSLRDSCAGASSAK GERSECSEEQVQSSFVRADALRIGSQIGDEHNSAESIQPETGINGGEQTAEVKSTTVV KDVNMEESTIVSRPYACSDGSDSLELEVKVCDICGDIGREELLAICSKCNDGAEHIYC MRVKMDNVPKSDWMCEECMLGKETEKQKQDKIEEGVGIFKKSNTLEPETKVEESEAYK VSSSRLFSFKRPAGGLQVVRKRPFETVLKSPSTSSSSSKTSMHQSGGNSSSTTLKTVC IPTESSIKSPKLSSQSQVLRGSLLKSKSFSAMSSKEDVQLLKEGGSRMQGFAKDTAAS DSKRGVLMMSKSMSLKNMRSYGVNNSNADSRLCPNFSHGEDLKRSRHAKGQHSTNTEK KLRLANSDSFLLVADKRIASPSNNSLRQSSSSSCHDLIAVKAHEISDNSLKISGHSAQ GGSASEEKKRVVNVRRHAAYSVEVVPATCTNQSNANVLPDEQPCLRDLSMFASSLHMP SWISAVPQLDYIWQGKFEIQRSGGLPFTCDGIQAHLSTCGSHKVVEVVQKLPQKLLLE EVPRLSMWPTQFMKSHATEDNIALYFFAKDLNSYERSYENLLDRMIKNEVSLKGNFGG VDLLIFTSNLLPEKSRRWNNLLFLWGVFGGKGVHCLGKIPGMSASENLLPPGKSSESI SASLVSYNTQQTLNSITLLDSQAVTSGRMVEVCETKASWEQKPPDLQTSCSQPMGRVD GEMENEQFSRADSSQCFLQRQERDSKRRPEIDLNNSLQESEEYAEDCTEADGRNDCKR LKSCFSGMDIELDSLGDK" mRNA complement(join(<29297649..29297675,29298110..29298453, 29298553..29298677,29298764..29298994,29299115..29299790, 29299897..29300312,29300472..29300557,29300990..29301244, 29301348..29302172,29302794..29302871,29303825..29304000)) /locus_tag="TCM_015723" /product="Uncharacterized protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013164001" /inference="similar to AA sequence:Phytozome:GSVIVT01013164001" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc503t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc522t8" mRNA complement(join(<29297649..29297675,29298110..29298453, 29298553..29298677,29298764..29298994,29299115..29299790, 29299897..29300312,29300472..29300557,29300990..29301244, 29301348..29302172,29302794..29302842,29303492..29304000)) /locus_tag="TCM_015723" /product="Uncharacterized protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013164001" /inference="similar to AA sequence:Phytozome:GSVIVT01013164001" /note="transcript variant 7; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc503t8; alternateUTRof:Thecc1EG015723t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc522t8" CDS complement(join(<29297649..29297675,29298110..29298453, 29298553..29298677,29298764..29298994,29299115..29299790, 29299897..29300312,29300472..29300557,29300990..29301244, 29301348..29302172,29302794..29302796)) /locus_tag="TCM_015723" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY24011.1" /db_xref="Phytozome:GSVIVT01013164001" /translation="MGSSNAEKGFSGGHSSSSKLGLKEESGTCNTCAPSCSPCLHSEQ VTSMATKTNGFSGEACKKKDSNCCSFNDADLSSPRVNSACNDRHHTSSETSQPLSACL SRESFSENAESEETLRDCNTSEGIKMIRKPNLCQNSADNCGSLKSSIFHDKVVSNQLE KQKELECHGDNIAFICGSDYVKTRGGGHNSDADKKNLSYRSASVDSFSETEKAVNAQP ASSCLVGSPCDEVDNNHPRRSNRSTNVSSQEILCCSNKSDLSEISSLRDSCAGASSAK GERSECSEEQVQSSFVRADALRIGSQIGDEHNSAESIQPETGINGGEQTAEVKSTTVV KDVNMEESTIVSRPYACSDGSDSLELEVKVCDICGDIGREELLAICSKCNDGAEHIYC MRVKMDNVPKSDWMCEECMLGKETEKQKQDKIEEGVGIFKKSNTLEPETKVEESEAYK VSSSRLFSFKRPAGGLQVVRKRPFETVLKSPSTSSSSSKTSMHQSGGNSSSTTLKTVC IPTESSIKSPKLSSQSQVLRGSLLKSKSFSAMSSKEDVQLLKEGGSRMQGFAKDTAAS DSKRGVLMMSKSMSLKNMRSYGVNNSNADSRLCPNFSHGEDLKRSRHAKGQHSTNTEK KLRLANSDSFLLVADKRIASPSNNSLRQSSSSSCHDLIAVKAHEISDNSLKISGHSAQ GGSASEEKKRVVNVRRHAAYSVEVVPATCTNQSNANVLPDEQPCLRDLSMFASSLHMP SWISAVPQLDYIWQGKFEIQRSGGLPFTCDGIQAHLSTCGSHKVVEVVQKLPQKLLLE EVPRLSMWPTQFMKSHATEDNIALYFFAKDLNSYERSYENLLDRMIKNEVSLKGNFGG VDLLIFTSNLLPEKSRRWNNLLFLWGVFGGKGVHCLGKIPGMSASENLLPPGKSSESI SASLVSYNTQQTLNSITLLDSQAVTSGRMVEVCETKASWEQKPPDLQTSCSQPMGRVD GEMENEQFSRADSSQRQERDSKRR" CDS complement(join(<29297649..29297675,29298110..29298453, 29298553..29298677,29298764..29298994,29299115..29299790, 29299897..29300312,29300472..29300557,29300990..29301244, 29301348..29302172,29302794..29302796)) /locus_tag="TCM_015723" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY24012.1" /db_xref="Phytozome:GSVIVT01013164001" /translation="MGSSNAEKGFSGGHSSSSKLGLKEESGTCNTCAPSCSPCLHSEQ VTSMATKTNGFSGEACKKKDSNCCSFNDADLSSPRVNSACNDRHHTSSETSQPLSACL SRESFSENAESEETLRDCNTSEGIKMIRKPNLCQNSADNCGSLKSSIFHDKVVSNQLE KQKELECHGDNIAFICGSDYVKTRGGGHNSDADKKNLSYRSASVDSFSETEKAVNAQP ASSCLVGSPCDEVDNNHPRRSNRSTNVSSQEILCCSNKSDLSEISSLRDSCAGASSAK GERSECSEEQVQSSFVRADALRIGSQIGDEHNSAESIQPETGINGGEQTAEVKSTTVV KDVNMEESTIVSRPYACSDGSDSLELEVKVCDICGDIGREELLAICSKCNDGAEHIYC MRVKMDNVPKSDWMCEECMLGKETEKQKQDKIEEGVGIFKKSNTLEPETKVEESEAYK VSSSRLFSFKRPAGGLQVVRKRPFETVLKSPSTSSSSSKTSMHQSGGNSSSTTLKTVC IPTESSIKSPKLSSQSQVLRGSLLKSKSFSAMSSKEDVQLLKEGGSRMQGFAKDTAAS DSKRGVLMMSKSMSLKNMRSYGVNNSNADSRLCPNFSHGEDLKRSRHAKGQHSTNTEK KLRLANSDSFLLVADKRIASPSNNSLRQSSSSSCHDLIAVKAHEISDNSLKISGHSAQ GGSASEEKKRVVNVRRHAAYSVEVVPATCTNQSNANVLPDEQPCLRDLSMFASSLHMP SWISAVPQLDYIWQGKFEIQRSGGLPFTCDGIQAHLSTCGSHKVVEVVQKLPQKLLLE EVPRLSMWPTQFMKSHATEDNIALYFFAKDLNSYERSYENLLDRMIKNEVSLKGNFGG VDLLIFTSNLLPEKSRRWNNLLFLWGVFGGKGVHCLGKIPGMSASENLLPPGKSSESI SASLVSYNTQQTLNSITLLDSQAVTSGRMVEVCETKASWEQKPPDLQTSCSQPMGRVD GEMENEQFSRADSSQRQERDSKRR" mobile_element 29306470..29306571 /note="source:CACAO_on_E172_scaffold_5 341 458" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(29308819..29308879) /note="source:scaffold_3_CACTA_0377 6830 6890" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29309235..29310297) /note="source:scaffold_5_CACTA_0614 1494 2616" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29310712..29310837) /note="source:CACAO_PIF_E465_scaffold_115 178 302" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 29311506..29315785 /locus_tag="TCM_015725" /note="dbxref CacaoGD:Thecc1EG015725" mRNA join(29311506..29312041,29312702..29312853, 29313135..29313230,29313334..29313396,29313691..29313759, 29313858..29313960,29314050..29314121,29314538..29314626, 29314750..29315785) /locus_tag="TCM_015725" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02570.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400002140" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08965t00001" CDS join(29311741..29312041,29312702..29312853, 29313135..29313230,29313334..29313396,29313691..29313759, 29313858..29313960,29314050..29314121,29314538..29314626, 29314750..29314902) /locus_tag="TCM_015725" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24013.1" /db_xref="Phytozome:PGSC0003DMP400002140" /db_xref="TAIR:AT2G35260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2D255" /translation="MEVPILSLTSKTTSYLGSSCVSSSSWNVKLLCEFGVRKRRMSIR CAKASVERSGEAAIKDRERFAGSAMEVTTLDRSFGEAADFPVWDKIGAVVRLSYGIGI YGAMALAGRFICSITGIDSMGGFHPSLDAVLEGLGYAVPPIMALLFILDDEVVKVSPH ARAIRDVEDEELRSFFYGMSPWQFILMVAASSVGEELFYRAAVQGALADIFLRGTELV SDARGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVAASPKDPTYVVAPVQRSRPA REDLKKLFIAWYERRQMKKIYSPLLEGILALYLGFEWIQTDNILAPIITHGIYSAVVL GHGLWKIHDHRRRLHQRIQQLKSEGKSSNKL" gene complement(29315190..29330398) /locus_tag="TCM_015726" /note="dbxref CacaoGD:Thecc1EG015726" mRNA complement(join(29315190..29315251,29318124..29318557, 29318893..29318926,29319011..29319164,29319336..29319458, 29319620..29319637,29319719..29319776,29319852..29319990, 29320647..29320755,29320911..29321155,29322040..29322543, 29330143..29330398)) /locus_tag="TCM_015726" /product="Peptidase M20/M25/M40 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08980.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02560.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06890t00001" mobile_element complement(29315983..29316229) /note="source:scaffold_8_CACTA_0867 7974 8228" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29317633..29317721 /note="source:scaffold_10_CACTA_0130 9487 9574" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(29318095..29318557,29318893..29319164, 29319336..29319458,29319620..29319637,29319719..29319776, 29319852..29319990,29320647..29320755,29320911..29321155, 29322040..>29322264)) /locus_tag="TCM_015726" /product="Peptidase M20/M25/M40 family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08980.1" /inference="similar to AA sequence:Phytozome:Glyma11g04650.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc188t4; inference alignment:Newbler:10:TSA:cgbaB_g06890t00001" mRNA complement(join(29318126..29318557,29318891..29318926, 29319011..29319164,29319336..29319458,29319620..29319637, 29319716..29319776,29319852..29319990,29320647..29320755, 29320911..29321155,29322040..29322439)) /locus_tag="TCM_015726" /product="Peptidase M20/M25/M40 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08980.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08980.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9013t1; inference alignment:Newbler:10:TSA:cgbaB_g06890t00001" CDS complement(join(29318454..29318557,29318893..29318926, 29319011..29319164,29319336..29319458,29319620..29319637, 29319719..29319776,29319852..29319990,29320647..29320755, 29320911..29321155,29322040..29322492)) /locus_tag="TCM_015726" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Peptidase M20/M25/M40 family protein isoform 1" /protein_id="EOY24014.1" /db_xref="Phytozome:POPTR_0001s02560.1" /db_xref="TAIR:AT4G17830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JPZ7" /translation="MSACFPCTFFSNAKYKLYAVSEVENRLLKRKLSTFIRVYGQMAT SNVKQTLGNLNKDSFVSLLTKVIGESKFLQNNPPELIPEEDRVVKHVLDCLVPYSTTT GGGPLVVNHVTCFPGRGNLIVEYPGTEPGKILSFVGMHMDVVTANPNDWDFDPFSLSI DGDKLRGRGTTDCLGHVALVTELMRKLGERKPKLKSTVVAVFIANEENSAITGVGVDA LVKDGLLDKLKGGPLFWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLAHKAINPLEL GMEALKEIQLRFYKDFPPHPNEQVYGFATPSTMKPTQWSYPGGGINQIPGECTLSGDV RLTPFYNVKDVMEKLQEYVDDINENIDELDTQGPVSKYILHDENLRGSLTLTFDEAMS GVACDLDSRGFHVLCKATEEAVGYVKPYSITGTLPLIRELQDEGFDVQTAGYGLMATY HAKNEYCLLSDMCQGYDVFTSIISQLEN" CDS complement(join(29318552..29318557,29318891..29318926, 29319011..29319164,29319336..29319458,29319620..29319637, 29319716..29319776,29319852..29319990,29320647..29320755, 29320911..29321155,29322040..29322369)) /locus_tag="TCM_015726" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Peptidase M20/M25/M40 family protein isoform 2" /protein_id="EOY24015.1" /db_xref="Phytozome:POPTR_0003s08980.1" /db_xref="TAIR:AT4G17830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JPZ7" /translation="MATSNVKQTLGNLNKDSFVSLLTKVIGESKFLQNNPPELIPEED RVVKHVLDCLVPYSTTTGGGPLVVNHVTCFPGRGNLIVEYPGTEPGKILSFVGMHMDV VTANPNDWDFDPFSLSIDGDKLRGRGTTDCLGHVALVTELMRKLGERKPKLKSTVVAV FIANEENSAITGVGVDALVKDGLLDKLKGGPLFWIDTADKQPCIGTGGMIPWKLHVTG KLFHSGLAHKAINPLELGMEALKEIQLRFYKDFPPHPNEQVYGFATPSTMKPTQWSYP GGGINQIPGECTLSGDVRLLTPFYNVKDVMEKLQEYVDDINENIDELDTQGPVSKYIL HDENLRGSLTLTFDEAMSGVACDLDSRGFHVLCKATEEAVGYVKPYSITGTLPLIREL QDEGFDVQTAGYGV" CDS complement(join(29318957..29319164,29319336..29319458, 29319620..29319637,29319719..29319776,29319852..29319990, 29320647..29320755,29320911..29321155, 29322040..>29322264)) /locus_tag="TCM_015726" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Peptidase M20/M25/M40 family protein isoform 3" /protein_id="EOY24016.1" /db_xref="Phytozome:Glyma11g04650.1" /db_xref="TAIR:AT4G17830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JPZ7" /translation="PPELIPEEDRVVKHVLDCLVPYSTTTGGGPLVVNHVTCFPGRGN LIVEYPGTEPGKILSFVGMHMDVVTANPNDWDFDPFSLSIDGDKLRGRGTTDCLGHVA LVTELMRKLGERKPKLKSTVVAVFIANEENSAITGVGVDALVKDGLLDKLKGGPLFWI DTADKQPCIGTGGMIPWKLHVTGKLFHSGLAHKAINPLELGMEALKEIQLRFYKDFPP HPNEQVYGFATPSTMKPTQWSYPGGGINQIPGECTLSGDVRLTPFYNVKDVMEKLQEY VDDINENIDELDTQGPVSKYILHDENLRGSLTLTFDEAMSGVACDLDSRGFHVLCKAT EEAVGYVKPYSITGTLPLIRELQVRYISFSSSCSSDLLSI" mobile_element 29328954..29329033 /note="source:INTACT289_F14_scaffold_4-int 1323 1403" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29330447..29337684) /locus_tag="TCM_015727" /note="dbxref CacaoGD:Thecc1EG015727" mRNA complement(join(29330447..29331243,29337423..29337684)) /locus_tag="TCM_015727" /product="Palmate-like pentafoliata 1 transcription factor" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09000.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09000.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc8098t1" CDS complement(29330487..29331239) /locus_tag="TCM_015727" /codon_start=1 /product="Palmate-like pentafoliata 1 transcription factor" /protein_id="EOY24017.1" /db_xref="Phytozome:POPTR_0003s09000.1" /db_xref="TAIR:AT4G17810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E2IBP7" /translation="MAAELGLLSLNQLQKLAQSQQNQIQLQPNPSLAAASWMWNPKAQ PQEDDDSWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR LHQTQPSGAINPTSSSSTTSSSTVLIPTQEFGTNGGLCLLYQLPNPNGVFTSPPMNAC SNDSPSTLLSISPYPSNNLMEAPSLNFPVTPQGLNNSSSLCYSSKAEPSTQTSADNCI NNIGNSSSNNCKETSIEELDLELRLGHRPTTS" mobile_element complement(29331794..29331868) /note="source:scaffold_10_CACTA_0128 5326 5399" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29333312..29333361 /note="source:scaffold_3_CACTA_0377 2393 2440" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29333328..29333394 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3238 3306" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29333329..29333373) /note="source:CACAO_M_S_E14932_F233_scaffold_2 1402 1451" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29336072..29340707 /locus_tag="TCM_015728" /note="dbxref CacaoGD:Thecc1EG015728" mRNA join(29336072..29336377,29340275..29340707) /locus_tag="TCM_015728" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14565t00001" mobile_element complement(29337173..29337226) /note="source:CACAO_M_E44848_F172_scaffold_6 1930 1982" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 29340414..29340647 /locus_tag="TCM_015728" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24018.1" /translation="MSLVFGVHNKFEGVGTGHPPTVPAILRDGESMRSEEKSASHGSS LSTHSWHHVAQLAFAYAFRSSKGGLLFGLFWLH" mobile_element complement(29344578..29344590) /note="source:INTACT93F_F345_scaffold_2-int 16869 16914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29344591..29344662) /note="source:scaffold_5_CACTA_0580 7228 7298" /mobile_element_type="transposon:TIR/CACTA" gene complement(29346832..29348581) /locus_tag="TCM_015729" /note="dbxref CacaoGD:Thecc1EG015729" mRNA complement(join(29346832..29347585,29348376..29348581)) /locus_tag="TCM_015729" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage" CDS complement(join(29347356..29347585,29348376..29348520)) /locus_tag="TCM_015729" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24019.1" /translation="MRDFVITMRSNRACNSISRGGQWSVVSGQRPRKLPSNRKRGEAK ESELGCFGKKEKGIARTLSFRILEKCTLSSPFLFSRPPNSRSPEQSRAELQFLISLHI KLLLHPKICSLRGWASACSMTF" mobile_element 29351048..29351102 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4113 4165" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29355126..29356600 /locus_tag="TCM_015730" /note="dbxref CacaoGD:Thecc1EG015730" mRNA 29355126..29356600 /locus_tag="TCM_015730" /product="AT-hook DNA-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016102t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02520.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8913t1" CDS 29355615..29356493 /locus_tag="TCM_015730" /note="paralog of Thecc1EG016102t1" /codon_start=1 /product="AT-hook DNA-binding family protein" /protein_id="EOY24020.1" /db_xref="Phytozome:POPTR_0001s02520.1" /db_xref="TAIR:AT4G17800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2N4" /translation="MAGLDLGTASRYVHQLHRPDLHLQHQPEPEDHEASHNRVGGGGG GSQYGSADHQQDDGSHHALDLVNAGNSGPGDLVARRPRGRPPGSKNKPKPPVIITRES ANTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTL HGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELMAAGPVIVIAASF TNVAYERLPLDEDEQLQMQSGGGGSGGGGGNNMFADGGAGAGGLPFFNLPLNMPPNVQ LPVEGWPGNSGGRPPF" mobile_element complement(29357258..29357305) /note="source:scaffold_8_CACTA_0860 10425 10470" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29359168..29359273 /note="source:CACAO_M_S_E18487_F233_scaffold_3 1189 1265" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29359184..29359277 /note="source:scaffold_3_CACTA_0382 1849 1942" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29359393..29359514) /note="source:CACAO_M_S_E18487_F233_scaffold_3 1200 1318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29359421..29359538 /note="source:CACAO_M_E72142_F322_scaffold_10 685 817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29359440..29359466) /note="source:CACAO_Mariner_E25_scaffold_1 3164 3252" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 29359467..29359551 /note="source:scaffold_10_CACTA_0130 1143 1225" /mobile_element_type="transposon:TIR/CACTA" gene complement(29361817..29363851) /locus_tag="TCM_015731" /note="dbxref CacaoGD:Thecc1EG015731" mRNA complement(join(29361817..29362199,29362629..29362716, 29362955..29363851)) /locus_tag="TCM_015731" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29827.m002541" /inference="similar to AA sequence:ricco:29827.m002541" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8923t1" CDS complement(29362969..29363343) /locus_tag="TCM_015731" /note="dbxref ricco:29827.m002541" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24021.1" /db_xref="TAIR:AT2G35290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU18" /translation="MDCLVLPVSLLRRRCTTSGLRYRPLRQDGYGDLDRQVTVVVGKE KREFLVDPFVLEESPFRALIDTMKKEYGSQVDARREKRRVIFVDVDAILFEHMLWLMN NDCSSLFQLNLEEIIDFYAQDN" gene complement(29365373..29370672) /locus_tag="TCM_015732" /note="dbxref CacaoGD:Thecc1EG015732" mRNA complement(join(29365373..29366040,29366332..29366493, 29367946..29368092,29368763..29368818,29368904..29369489, 29370185..29370387)) /locus_tag="TCM_015732" /product="AT hook motif DNA-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29827.m002544" /inference="similar to AA sequence:ricco:29827.m002544" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc261t1; inference alignment:Newbler:10:TSA:cgbaP2_g06138t00001" mRNA complement(join(29365383..29366040,29366332..29366493, 29367946..29368077,29368763..29368818,29368904..29369460, 29370180..29370672)) /locus_tag="TCM_015732" /product="AT hook motif DNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29827.m002544" /inference="similar to AA sequence:ricco:29827.m002544" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06138t00001" CDS complement(join(29365768..29366040,29366332..29366493, 29367946..29368077,29368763..29368818,29368904..29369441)) /locus_tag="TCM_015732" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29827.m002544" /codon_start=1 /product="AT hook motif DNA-binding family protein isoform 1" /protein_id="EOY24022.1" /db_xref="TAIR:AT4G17950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2N8" /translation="MESREVQGPAAGGLQVQQPQQMVMGPTSSSYPSNSGMISPNPTP AIPPSSTPRFPFNSLSSPPPPPHHQHHQHHQHQQQPKPLDSLNSVGFDGSPQLRYNTE PAMKKKRGRPRKYAPDGNIALLQLAPTTPIASNSANHGGGDSVGLGSSSGGGAASEPP AKRNRGRPPGSGKRQMDALGGVGGVGFTPHVITVKAGEDIAAKIMAFSQQGPRTVCIL SANGAICNVTLRQPAMSGGTVTYEGRFEIISLSGSFLLSENNGSRSRSGGLSVSLAGS DGRVLGGGVAGMLQAASPVQVIVGSFIADGKKQSTDILKTGPSLLTPNMLNFGAPAST SSPPSQGGSSESSDENGGSALNRGSGFYSNSAPSIHNNNMQMYPLWTGHTPQ" CDS complement(join(29365768..29366040,29366332..29366493, 29367946..29368092,29368763..29368818,29368904..29369441)) /locus_tag="TCM_015732" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29827.m002544" /codon_start=1 /product="AT hook motif DNA-binding family protein isoform 2" /protein_id="EOY24023.1" /db_xref="TAIR:AT4G17950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2N8" /translation="MESREVQGPAAGGLQVQQPQQMVMGPTSSSYPSNSGMISPNPTP AIPPSSTPRFPFNSLSSPPPPPHHQHHQHHQHQQQPKPLDSLNSVGFDGSPQLRYNTE PAMKKKRGRPRKYAPDGNIALLQLAPTTPIASNSANHGGGDSVGLGSSSGGGAASEPP AKRNRGRPPGSGKRQMDALGGVGGVGFTPHVITVKAGESFGLQDIAAKIMAFSQQGPR TVCILSANGAICNVTLRQPAMSGGTVTYEGRFEIISLSGSFLLSENNGSRSRSGGLSV SLAGSDGRVLGGGVAGMLQAASPVQVIVGSFIADGKKQSTDILKTGPSLLTPNMLNFG APASTSSPPSQGGSSESSDENGGSALNRGSGFYSNSAPSIHNNNMQMYPLWTGHTPQ" gene complement(29371267..29376343) /locus_tag="TCM_015733" /note="dbxref CacaoGD:Thecc1EG015733" mRNA complement(join(29371267..29372090,29372170..29372214, 29372723..29372837,29373114..29373256,29373335..29373425, 29373802..29373918,29374148..29374286,29374361..29374409, 29374493..29374582,29374741..29374835,29375253..29375343, 29375528..29375657,29375871..29376171)) /locus_tag="TCM_015733" /product="Clathrin adaptor complexes medium subunit family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013199001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010472t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013199001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b015205t1a2; inference alignment:Newbler:10:TSA:cgbaL_g11227t00001" mRNA complement(join(29371267..29371659,29371896..29372090, 29372170..29372214,29372723..29372837,29373114..29373256, 29373335..29373425,29373802..29373918,29374148..29374286, 29374361..29374409,29374493..29374582,29374741..29374835, 29375253..29375343,29375480..29375657,29375871..29376171)) /locus_tag="TCM_015733" /product="Clathrin adaptor complexes medium subunit family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013199001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010472t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013199001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11227t00001" mRNA complement(join(29371267..29372214,29372723..29372837, 29373114..29373256,29373335..29373425,29373802..29373918, 29374148..29374286,29374361..29374409,29374493..29374582, 29374741..29374835,29375253..29375343, 29375480..>29375551)) /locus_tag="TCM_015733" /product="Clathrin adaptor complexes medium subunit family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013199001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010472t1" /inference="similar to AA sequence:frave:gene10699" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc279t5; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc279t10; inference alignment:Newbler:10:TSA:cgbaL_g11227t00001" mRNA complement(join(29371632..29371659,29371896..29372092, 29373121..29373256,29373335..29373425,29373802..29373918, 29374148..29374286,29374361..29374409,29374493..29374582, 29374741..29374835,29375253..29375343,29375480..29375657, 29375871..29376343)) /locus_tag="TCM_015733" /product="Clathrin adaptor complexes medium subunit family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013199001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010472t1" /inference="similar to AA sequence:frave:gene10699" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc461t1; inference alignment:Newbler:10:TSA:cgbaL_g11227t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc279t10" CDS complement(join(29372010..29372090,29372170..29372214, 29372723..29372837,29373114..29373256,29373335..29373425, 29373802..29373918,29374148..29374286,29374361..29374409, 29374493..29374582,29374741..29374835,29375253..29375343, 29375528..29375657,29375871..29375953)) /locus_tag="TCM_015733" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010472t1" /codon_start=1 /product="Clathrin adaptor complexes medium subunit family protein isoform 2" /protein_id="EOY24025.1" /db_xref="Phytozome:GSVIVT01013199001" /db_xref="TAIR:AT5G46630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KHJ7" /translation="MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKE LGTCPVRQIGGCSFFYMRISNVYIVIVAVALFKSYFGGAFDEDAIRNNFVLIYELLDE IMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYK KNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQ LKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPF RVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYN AAIDCLVWKIRKFPGQTEPTLSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRV RFLKVWEKSGYNTVEWVRYITKAGSYEVRC" CDS complement(join(29372010..29372092,29373121..29373256, 29373335..29373425,29373802..29373918,29374148..29374286, 29374361..29374409,29374493..29374582,29374741..29374835, 29375253..29375343,29375480..29375657,29375871..29375953)) /locus_tag="TCM_015733" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene10699; paralog of Thecc1EG010472t1" /codon_start=1 /product="Clathrin adaptor complexes medium subunit family protein isoform 5" /protein_id="EOY24028.1" /db_xref="TAIR:AT5G46630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KHJ7" /translation="MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKE LGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDE DAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATL QVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPD LKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGE FELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVIKIPVPKQ TAKTSFQVTSGRAKYNAAIDCLEVWEKSGYNTVEWVRYITKAGSYEVRC" CDS complement(join(29372010..29372090,29372170..29372214, 29372723..29372837,29373114..29373256,29373335..29373425, 29373802..29373918,29374148..29374286,29374361..29374409, 29374493..29374582,29374741..29374835,29375253..29375343, 29375480..29375657,29375871..29375953)) /locus_tag="TCM_015733" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010472t1" /codon_start=1 /product="Clathrin adaptor complexes medium subunit family protein isoform 1" /protein_id="EOY24024.1" /db_xref="Phytozome:GSVIVT01013199001" /db_xref="TAIR:AT5G46630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KHJ7" /translation="MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKE LGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDE DAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATL QVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPD LKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGE FELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVIKIPVPKQ TAKTSFQVTSGRAKYNAAIDCLVWKIRKFPGQTEPTLSAEVELISTMAEKKSWTRPPI QMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEVRC" CDS complement(join(29372122..29372214,29372723..29372837, 29373114..29373256,29373335..29373425,29373802..29373918, 29374148..29374286,29374361..29374409,29374493..29374582, 29374741..29374835,29375253..29375343, 29375480..>29375551)) /locus_tag="TCM_015733" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene10699; paralog of Thecc1EG010472t1" /codon_start=1 /product="Clathrin adaptor complexes medium subunit family protein isoform 3" /protein_id="EOY24026.1" /db_xref="TAIR:AT5G46630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KHJ7" /translation="SNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRN NFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGA VGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGL NDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMK YRITEGVNLPFRVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVIKIPVPKQTAKTS FQVTSGRAKYNAAIDCLVWKIRKFPGQTEPTLSAEVELISTMAEKKSWTRPPIQMEFQ VPMFTASGLRVRFLKVRILMYSECICDSFR" mRNA complement(join(29372179..29372214,29372723..29373256, 29373335..29373425,29373802..29373918,29374148..29374286, 29374361..29374409,29374493..29374582,29374741..29374835, 29375253..29375343,29375480..29375657,29375871..29376343)) /locus_tag="TCM_015733" /product="Clathrin adaptor complexes medium subunit family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013199001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010472t1" /inference="similar to AA sequence:frave:gene10699" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc461t8; inference alignment:Newbler:10:TSA:cgbaL_g11227t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc279t10" CDS complement(join(29373110..29373256,29373335..29373425, 29373802..29373918,29374148..29374286,29374361..29374409, 29374493..29374582,29374741..29374835,29375253..29375343, 29375480..29375657,29375871..29375953)) /locus_tag="TCM_015733" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene10699; paralog of Thecc1EG010472t1" /codon_start=1 /product="Clathrin adaptor complexes medium subunit family protein isoform 4" /protein_id="EOY24027.1" /db_xref="TAIR:AT5G46630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KHJ7" /translation="MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKE LGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDE DAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATL QVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPD LKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGE FELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVIKIPVPKQ TAKTSFQVTSGRAKYNAAIDCLVWK" mobile_element 29377421..29378350 /note="source:CACAO_Again_on_S_E212_scaffold_6 1 905" /mobile_element_type="transposon:TIR/hAT" gene 29378539..29385041 /locus_tag="TCM_015734" /note="dbxref CacaoGD:Thecc1EG015734" mRNA join(29378539..29378605,29381608..29381942, 29384311..29385041) /locus_tag="TCM_015734" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013197001" /inference="similar to AA sequence:Phytozome:POPTR_0001s02620.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09936t00001" mobile_element 29378584..29378648 /note="source:CACAO_on_E69_scaffold_9 182 246" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(29378762..29378882) /note="source:scaffold_4_CACTA_0483 973 1095" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29379235..29379675) /note="source:scaffold_9_CACTA_0946 17798 18248" /mobile_element_type="transposon:TIR/CACTA" gene 29380495..29381317 /locus_tag="TCM_015735" /note="dbxref CacaoGD:Thecc1EG015735" mRNA 29380495..29381317 /locus_tag="TCM_015735" /product="Ribonuclease H protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015967t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 29380676..29381122 /locus_tag="TCM_015735" /note="paralog of Thecc1EG015967t1" /codon_start=1 /product="Ribonuclease H protein" /protein_id="EOY24030.1" /translation="MDRKLSMIKGLVAASYHAVQILCTHSRLNGYKREMLVGWQNPPQ GWVAINTDGALRCNTNKAAAGGVLRDYNGYWLGGSAAKLGKCSSYRAELWGVLHSLRI AKDKGFHRIWLQVDNKIVVQAITFSALYPCANSDLLNAIHGLLQLD" CDS join(29381694..29381942,29384311..29384553) /locus_tag="TCM_015734" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24029.1" /db_xref="Phytozome:POPTR_0001s02620.1" /db_xref="TAIR:AT4G17960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU09" /translation="MRFFRRIAGLLGFVRDDGHEVKEENDHHNSNNNNNNQPPSNRPV FQETGLPRRGFSVPVQVAVDRPQPGPLLLPCTSGDGGVQGLKWYAKRLRIDEDGDVAD EFLDEVLPETSSAASAENEQKPFPKFKVKYTTRPAKVKTQVLSHDGKIQQCVEYQGSL QWV" gene complement(29384957..29385691) /locus_tag="TCM_015736" /note="dbxref CacaoGD:Thecc1EG015736" mRNA complement(join(29384957..29385427,29385534..29385691)) /locus_tag="TCM_015736" /product="Late embryogenesis abundant protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G32560.1" /inference="similar to AA sequence:ricco:29827.m002548" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03172t00002" CDS complement(join(29385128..29385427,29385534..29385620)) /locus_tag="TCM_015736" /note="dbxref ricco:29827.m002548" /codon_start=1 /product="Late embryogenesis abundant protein, putative" /protein_id="EOY24031.1" /translation="MQSVKEKISNMAGSAKEHMNIGKAKVEEDQMEKAAARTAEEKRL ATESKKAKEARAKMELQQDKVRHAKERLRSKQPQYLHGYGYDHAPPVSGTHGHQTVGS AAPVGGTNVPTYPLVGHPQPHGHKMG" gene 29386476..29390140 /locus_tag="TCM_015737" /note="dbxref CacaoGD:Thecc1EG015737" mRNA join(29386476..29386855,29387057..29387120, 29387325..29387413,29388722..29388790,29389493..29389537, 29389759..29390140) /locus_tag="TCM_015737" /product="2Fe-2S ferredoxin-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08900.1" /inference="similar to AA sequence:Phytozome:GSVIVT01013191001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01323t00001" CDS join(29386601..29386855,29387057..29387120, 29387325..29387413,29388722..29388790,29389493..29389537, 29389759..29389803) /locus_tag="TCM_015737" /codon_start=1 /product="2Fe-2S ferredoxin-like superfamily protein" /protein_id="EOY24032.1" /db_xref="Phytozome:GSVIVT01013191001" /db_xref="TAIR:AT1G32550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IE99" /translation="MDLVVPCNSCTPLYRQPPLHRRLSSPKRCSFPFNSFKCRLRTTS ELQTPVSITSPDGNLSPSIPTHKVTVHDRKQGVVHEFLVPEDQYILHTAESQNITLPF ACRHGCCTSCAVRVKSGQIRQPEALGISTELKAKGYALLCVGFPSSDLEVETQDEDEV YWLQFGRYFARGPIDRDDYALELAMGDE" mobile_element 29388326..29388664 /note="source:scaffold_3_CACTA_0397 1 339" /mobile_element_type="transposon:TIR/CACTA" misc_feature join(29388761..29388790,29388905..29389490) /locus_tag="TCM_015737" /note="Gene fragment of Thecc1EG015737t1; dbxref gnl|CacaoGD|Thecc1EG015737t1; quality class is mediumpartial-partof is thecc1eg015737t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1077t6_C2; dbxref CacaoGD:Thecc1EG015738t1" gene complement(29388850..29390427) /locus_tag="TCM_015739" /note="dbxref CacaoGD:Thecc1EG015739" mRNA complement(join(29388850..29389413,29390057..29390427)) /locus_tag="TCM_015739" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.60 coverage" CDS complement(join(29389385..29389413,29390057..29390288)) /locus_tag="TCM_015739" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24033.1" /translation="MGLLPKRKWRVYLPCVPSESREWSLFNSTTSACIWTFWHYLTPC LSRKVSSPLLFTDAEACSEDAGQVTIRPRIISMDGDAFKCHN" gene complement(29393322..29396201) /locus_tag="TCM_015740" /note="dbxref CacaoGD:Thecc1EG015740" mRNA complement(join(29393322..29393671,29394441..29394550, 29394704..29394817,29394995..29395108,29395695..29395843, 29395968..29396116)) /locus_tag="TCM_015740" /product="Lsd one like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g40720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026947t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013190001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b015211t1a2; alternateUTRof:Thecc1EG015740t1; inference alignment:Newbler:10:TSA:cgbaL_g07486t00001" mRNA complement(join(29393517..29393671,29394441..29394550, 29394704..29394817,29394995..29395108,29395695..29395843, 29396183..29396201)) /locus_tag="TCM_015740" /product="Lsd one like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g40720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026947t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013190001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07486t00001" CDS complement(join(29393633..29393671,29394441..29394550, 29394704..29394817,29394995..29395108,29395695..29395755)) /locus_tag="TCM_015740" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026947t1" /codon_start=1 /product="Lsd one like 1 isoform 1" /protein_id="EOY24034.1" /db_xref="Phytozome:GSVIVT01013190001" /db_xref="TAIR:AT1G32540.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZB1" /translation="MPVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSV CCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAH VNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASATEQKFNS" CDS complement(join(29393633..29393671,29394441..29394550, 29394704..29394817,29394995..29395108,29395695..29395755)) /locus_tag="TCM_015740" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026947t1" /codon_start=1 /product="Lsd one like 1 isoform 1" /protein_id="EOY24035.1" /db_xref="Phytozome:GSVIVT01013190001" /db_xref="TAIR:AT1G32540.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZB1" /translation="MPVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSV CCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAH VNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASATEQKFNS" gene 29396656..29401995 /locus_tag="TCM_015741" /note="dbxref CacaoGD:Thecc1EG015741" mRNA join(29396656..29396918,29401302..29401995) /locus_tag="TCM_015741" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS join(29396735..29396918,29401302..29401591) /locus_tag="TCM_015741" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24036.1" /translation="MGEMEGSPASHITQQKAIRTVCQISLILAKPGTLLLVVLFPLHY DGRALETDCDCDRTVGFGANRNFCERQQGVTYTTNNFNEVVQFLSSKNHRGTFDLLVT TGQERSRSRGGFVINNQTPFLGLSKWVLASKSKLFRIKDKSQFTALISATDLPDG" mobile_element 29398205..29398540 /note="source:CACAO_on_E683_scaffold_9 1195 1578" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 29398542..29399446 /note="source:CACAO_M_S_E32548_F268_scaffold_3 1 905" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29399447..29400314) /note="source:INTACT639F_F363_scaffold_5-int 7463 8359" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(29402174..29409241) /locus_tag="TCM_015742" /note="dbxref CacaoGD:Thecc1EG015742" mRNA complement(join(29402174..29402847,29403422..29403616, 29404662..29404755,29405496..29405663,29405776..29405966, 29406244..29406432,29409008..29409241)) /locus_tag="TCM_015742" /product="Eyes absent" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013189001" /inference="similar to AA sequence:Phytozome:POPTR_0001s02660.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09025t00001" CDS complement(join(29402588..29402847,29403422..29403616, 29404662..29404755,29405496..29405663,29405776..29405966, 29406244..29406432,29409008..29409038)) /locus_tag="TCM_015742" /codon_start=1 /product="Eyes absent" /protein_id="EOY24037.1" /db_xref="Phytozome:POPTR_0001s02660.1" /db_xref="TAIR:AT2G35320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82162" /translation="MFLWTTSRGVAKSGPLAQPILSSWARNDAIINLFFPFSVLFWEN LFEPGIFFHSSSQHTLSASSLPLNSLTQADMNQITNVYVWDMDETLILLKSLLNGTYA EAFSGVKDSQKGVEIGKMWEKHILQISDDFFFYEQIENCNKPFLEALSKYDDGQDLSD YDFKQDGFGPPHDDLNKKKLAYRHRVIANKYKQGLHNIFDQEMMDLWDALYNMTDEYT DRWLSSAREILEQCISGNEDATFCLPASGGIVNSNETGSRHINVLVTSGSLIPSLVKC LLFRLDSLISYENVYSSWDVGKLQCFEWIKERFNNPNFRFCAIGDGWEECEAAQAMKW PFIKIDLRPSSSHRFPGLTLKTVGFYFSVVYGNPDSENDEE" gene complement(29406537..29412278) /locus_tag="TCM_015743" /note="dbxref CacaoGD:Thecc1EG015743" mRNA complement(join(29406537..29406575,29409191..29409614, 29409743..29409883,29409978..29410894,29411554..29412191)) /locus_tag="TCM_015743" /product="Plant intracellular ras group-related LRR 4 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29827.m002551" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000029t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02670.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1596t1" mRNA complement(join(29409383..29409614,29409743..29410894, 29411554..29412278)) /locus_tag="TCM_015743" /product="Plant intracellular ras group-related LRR 4 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29827.m002551" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000029t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02670.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1596t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1596t1" CDS complement(join(29409746..29409883,29409978..29410894, 29411554..29412085)) /locus_tag="TCM_015743" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG000029t1" /codon_start=1 /product="Plant intracellular ras group-related LRR 4 isoform 1" /protein_id="EOY24038.1" /db_xref="Phytozome:POPTR_0001s02670.1" /db_xref="TAIR:AT4G35470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2P4" /translation="MAVMSKQDPSPAFVETVQEIMRLYRSLPPRPSIEEVEAAKSVLQ TVENEEKLKLEEISKAQAAEDVPEELFSVLQQVRKTMVLFQSHEQKKEALFLVEADKM FETFDGLIQRASLLVSGGTQDEKVSTFGEQARKFERESLISDDRLEKRKEDGGELNKD DAKGMVRSSSTKASFFSGEDSSEKLNLMKTAALIENTARSGAIVLDLRGKLMDQTEWL PLSIGKLKDVSEMDLSENRIMALPPSIGGLQALTKLDLHSNQLINLPDSVGELVNLIE LDLHANRLKSLPASFGNLTNLMNLDLSSNGYTHLPETIGNLTSLKRLNVETNDLEELP YTIGNCSLLLELILDFNQIRALPEAIGKLECLEILTAHYNRLKGLPTTMGNLSNLKEL DVSFNEIESIPENLCFAVSIKKLNVGKNFADLRALPRSIGNLEMLEELDISDDQIRVL PDSFGLLSKLRVFRADETPLEVPPREVIKLGAQAVVQFMADLVAKRGTKSPPAKKKKG FWFRVCSIFWHFRTANARTI" CDS complement(join(29409927..29410894,29411554..29412085)) /locus_tag="TCM_015743" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG000029t1" /codon_start=1 /product="Plant intracellular ras group-related LRR 4 isoform 2" /protein_id="EOY24039.1" /db_xref="Phytozome:POPTR_0001s02670.1" /db_xref="TAIR:AT4G35470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2P4" /translation="MAVMSKQDPSPAFVETVQEIMRLYRSLPPRPSIEEVEAAKSVLQ TVENEEKLKLEEISKAQAAEDVPEELFSVLQQVRKTMVLFQSHEQKKEALFLVEADKM FETFDGLIQRASLLVSGGTQDEKVSTFGEQARKFERESLISDDRLEKRKEDGGELNKD DAKGMVRSSSTKASFFSGEDSSEKLNLMKTAALIENTARSGAIVLDLRGKLMDQTEWL PLSIGKLKDVSEMDLSENRIMALPPSIGGLQALTKLDLHSNQLINLPDSVGELVNLIE LDLHANRLKSLPASFGNLTNLMNLDLSSNGYTHLPETIGNLTSLKRLNVETNDLEELP YTIGNCSLLLELILDFNQIRALPEAIGKLECLEILTAHYNRLKGLPTTMGNLSNLKEL DVSFNEIESIPENLCFAVSIKKLNVGKNFADLRALPRSIGNLEMLEELDISDDQIRVL PDSFGLLSKLRVFRADETPLEVPPREVIKLGAQVLLVRLQNLLVGILPV" mobile_element complement(29413463..29413528) /note="source:CACAO_PIF_E465_scaffold_115 233 291" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 29413676..29417745 /locus_tag="TCM_015744" /note="dbxref CacaoGD:Thecc1EG015744" mRNA join(29413676..29413921,29414019..29415741, 29416637..29417745) /locus_tag="TCM_015744" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29827.m002552" /inference="similar to AA sequence:ricco:29827.m002552" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8990t1" mRNA join(29413735..29413921,29414019..29415741, 29416608..29416664) /locus_tag="TCM_015744" /product="RING/U-box superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29827.m002552" /inference="similar to AA sequence:ricco:29827.m002552" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc812t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8990t1" CDS join(29414098..29415741,29416637..29417155) /locus_tag="TCM_015744" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29827.m002552" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY24040.1" /db_xref="TAIR:AT2G35330.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2P5" /translation="MGCTVREKHIRSTRRSRSVKPEFDPCCLLDKASISKSILESGLK PLSYPLGLNDSTQSPNPNPNNNSNTNFDDHGWGYCTEEQLEEILLKNLEFLYNEAISK LVALGYDEDVALKAILRNGHCYGGMDVLTNILHNSLAYLNGSCGSSNGSNSEESEPGF PDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASTMEIPTLPSPTSG CSPVSNNVESVGNNGVGVMSPALCRFHGGWGFGNRGAEFAVNGFFSYCTDMTLQRDIE CPKRFNLSPSMKSLLKKNVAMFAASFRANSKQMQTQNQACVGTLSSGDAPPAVAGGEV PTEKSEESQNLKSQDGVNSVLSKFRDLNIDDNYEHVGEDQKGEMIISLLHQIKDLEKQ VKERKEWAHQKAMQAARKLSSDLTELKMLRMEREETQRLKKGKHTIDDSTMKRLSDME NALRKASGQVDRANAAVRRLENENAEIRAEMEASKLSASESVKTCLEVAKREKKCLKK LLAWEKQKTKLQEEIAIEKEKINELQRCLARVEQDQKETESKWRQELKAKELALAQVE EERRSKEAAEVNNKRKLEALRLKIEIDFQRHKDDHQRLEQELSRLKVSAQSTELNHQS NNLLTGKSEGAKPQGETIARLLHELDKLEDSSEKEVNCDRECIICSKDEVSIVFLPCA HQVLCANCNDSYGKKGKATCPCCRMPIEQRIRVFGAAS" CDS join(29414098..29415741,29416608..29416658) /locus_tag="TCM_015744" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29827.m002552" /codon_start=1 /product="RING/U-box superfamily protein isoform 2" /protein_id="EOY24041.1" /db_xref="TAIR:AT2G35330.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2P5" /translation="MGCTVREKHIRSTRRSRSVKPEFDPCCLLDKASISKSILESGLK PLSYPLGLNDSTQSPNPNPNNNSNTNFDDHGWGYCTEEQLEEILLKNLEFLYNEAISK LVALGYDEDVALKAILRNGHCYGGMDVLTNILHNSLAYLNGSCGSSNGSNSEESEPGF PDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASTMEIPTLPSPTSG CSPVSNNVESVGNNGVGVMSPALCRFHGGWGFGNRGAEFAVNGFFSYCTDMTLQRDIE CPKRFNLSPSMKSLLKKNVAMFAASFRANSKQMQTQNQACVGTLSSGDAPPAVAGGEV PTEKSEESQNLKSQDGVNSVLSKFRDLNIDDNYEHVGEDQKGEMIISLLHQIKDLEKQ VKERKEWAHQKAMQAARKLSSDLTELKMLRMEREETQRLKKGKHTIDDSTMKRLSDME NALRKASGQVDRANAAVRRLENENAEIRAEMEASKLSASESVKTCLEVAKREKKCLKK LLAWEKQKTKLQEEIAIEKEKINELQRCLARVEQDQKETEQLCCAIFFYSQSGGRS" gene 29419036..29422101 /locus_tag="TCM_015747" /note="dbxref CacaoGD:Thecc1EG015747" mRNA join(29419036..29419854,29419951..29420091, 29420193..29420465,29420553..29420674,29420770..29420913, 29421264..29422101) /locus_tag="TCM_015747" /product="Aluminum-activated malate transporter 12" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013184001" /inference="similar to AA sequence:ricco:29827.m002553" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6083t2" CDS join(29419542..29419854,29419951..29420091, 29420193..29420465,29420553..29420674,29420770..29420913, 29421264..29421890) /locus_tag="TCM_015747" /note="dbxref ricco:29827.m002553" /codon_start=1 /product="Aluminum-activated malate transporter 12" /protein_id="EOY24042.1" /db_xref="TAIR:AT4G17970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49696" /translation="MATKVHVGMETEMNGNGVPEKVFNNWKKRIHDFSGKMKRFPGWL CRTIWKVGRDDPRRMIHAFKVGLSLTLVSLLYLMEPLFKGIGQNAIWAVMTVVVVLEF TAGATLCKGLNRGLGTVLAGSLAFFIEFIATKSGKVFRAVFIGAAVFLIGTAATYMRF FPYIKKNYDYGVVIFLLTFNLITVSSYRVENVLKLAHDRFYTIAIGCAICLFMSLLVF PIWSGEDLHNSTVAKLEGLAKSIEACVNEYFDDSDTKEKQERSSEDPIYKGYKAVLDS KSTDETLALYASWEPRHSRHCYRFPWQQYVKLGAVLRQFGYTVVALHGCLQTEIQTPR SVRALFKDPSIRLAGEVSKALMELANSIRNRRHCSPEILSDHLHEALQDLNTAIKSQP RLFLGSNSNQATNMLALAAAHAARQKPERDLGVSLSSVKTDSSALMEWKTKRVSEQTK ENERKVLRPQLSKIAITSLEFSEALPFAAFASLLVEIVARLDNVIEEVEELGRIACYK EFNPDNEIIVTCEKPPVDVTKSQLPSHAASD" gene 29422276..29423624 /locus_tag="TCM_015748" /note="dbxref CacaoGD:Thecc1EG015748" mRNA join(29422276..29422849,29423009..29423624) /locus_tag="TCM_015748" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013184001" /inference="similar to AA sequence:Phytozome:GSVIVT01013184001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc6196t1_C1" CDS join(29422675..29422849,29423009..29423529) /locus_tag="TCM_015748" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24043.1" /db_xref="Phytozome:GSVIVT01013184001" /db_xref="TAIR:AT1G32520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2P6" /translation="MACCISNTVFQQGWRRSPYSLFGWHIGKKKNAELKPQPKYHDVD LPFSPSLVDKTFLRGRELKCCYKAIIDGFRATNFHDCCDFKGPCVIIGYTDKSFKFGA FNPEGYRSTDDYYDTFDAFLFYWTGNEGNDPIVLPKIGGSGAALFDYARGGPQFGADG LLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKRKDGKESIFGDESRATLEE VQVFCSPQIASLY" gene complement(29426003..29428451) /locus_tag="TCM_015749" /note="dbxref CacaoGD:Thecc1EG015749" mRNA complement(join(29426003..29426400,29426501..29426821, 29426906..29427180,29427626..29428134,29428296..29428451)) /locus_tag="TCM_015749" /product="NAC domain protein, IPR003441" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013182001" /inference="similar to AA sequence:frave:gene10722" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1210t2" CDS complement(join(29426137..29426400,29426501..29426821, 29426906..29427180,29427626..29427782)) /locus_tag="TCM_015749" /note="dbxref frave:gene10722" /codon_start=1 /product="NAC domain protein, IPR003441" /protein_id="EOY24044.1" /db_xref="TAIR:AT4G17980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU01" /translation="MGGASLPPGFRFHPTDEELIGYYLKRKTEGQELELEVIPVIDLY KFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQS AVTGYRKTLVFYLGRAPLGDRTGWVMHEYRLSDEPSQGSTNQGAFALCRVVKRNEQKA TDAHGEPKATRIGSNSTNVELTSTRICNESLSIGDISCQTSYPNNESRCSSPTTSPYP YEVTQMQPFEPVSVDTDPASVWVSPDLILDSSKDYPQICETASQYFPQYEFPSSGTPW QQYDQTEFSPSSSYSNFGEIEHVDDLSRMNCMSPYSGHANYMDFYGNEGYDQSGSFSY LNPF" gene 29429663..29437377 /locus_tag="TCM_015750" /note="dbxref CacaoGD:Thecc1EG015750" mRNA join(29429663..29429693,29431493..29431795, 29433774..29434693,29435657..29435916,29436270..29437377) /locus_tag="TCM_015750" /product="Non-intrinsic ABC protein 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02730.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400035616" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06749t00001" CDS join(29431576..29431795,29433774..29434693, 29435657..29435916,29436270..29436588) /locus_tag="TCM_015750" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Non-intrinsic ABC protein 6 isoform 1" /protein_id="EOY24045.1" /db_xref="Phytozome:PGSC0003DMP400035616" /db_xref="TAIR:AT1G32500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQK7" /translation="MTTAEKSRKKHYKENTARERMISFCGELERWEPRPYPCRCFVLC FRPLCPLANSEFASPSPLRKSTAQPWCCLLRRAAGLSRSSMAALAFTHQNFLQFTPKL TPSKPKLKPKRTKTKLSIQTIPTSPQASFTDQFVLQLADSLEDSLPSSSSLPLQKLRD NSSETLVSTQWPSRKDESFRFTDTSFIKNSDIKPISRPPESLAFLDVSSDAQFKSFDF VDGFLVDSSFDSSNFPDGVYVGSLLKLSSEGILKRVCEFLGDFEWGDLFWSVNGLGAP DVTVVYVPEGCRVENPIYLKYISVEGGDGGSKKMPVSNPRVFVLVEKGGEVGIVEEFV GKEGSECYWTNSVLEVVVGEGGKVRHSYVQRQSLSAAHIKWTSVRQESTSTYELVEVS TGGKLSRHNVHVQQVGSDTVTELTTFHLSVGDQTQDLHSRIILDHPRGYSQQLHKCIV AHSSGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGA AISDLEDSQLFYFQARGIDLETARKALVFSFGAEVIDRLPYAFVQKQAKDHVKELLES TGKGSS" mRNA join(29433797..29434693,29435657..29435916, 29436283..29437157) /locus_tag="TCM_015750" /product="Non-intrinsic ABC protein 6, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02730.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400035616" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1037t2; inference alignment:Newbler:10:TSA:cgbaB_g06749t00001" CDS join(29433806..29434693,29435657..29435916, 29436283..29436301) /locus_tag="TCM_015750" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Non-intrinsic ABC protein 6, putative isoform 2" /protein_id="EOY24046.1" /db_xref="Phytozome:PGSC0003DMP400035616" /db_xref="TAIR:AT1G32500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQK7" /translation="MAALAFTHQNFLQFTPKLTPSKPKLKPKRTKTKLSIQTIPTSPQ ASFTDQFVLQLADSLEDSLPSSSSLPLQKLRDNSSETLVSTQWPSRKDESFRFTDTSF IKNSDIKPISRPPESLAFLDVSSDAQFKSFDFVDGFLVDSSFDSSNFPDGVYVGSLLK LSSEGILKRVCEFLGDFEWGDLFWSVNGLGAPDVTVVYVPEGCRVENPIYLKYISVEG GDGGSKKMPVSNPRVFVLVEKGGEVGIVEEFVGKEGSECYWTNSVLEVVVGEGGKVRH SYVQRQSLSAAHIKWTSVRQESTSTYELVEVSTGGKLSRHNVHVQQVGSDTVTELTTF HLSVGDQTQDLHSRIILDHPRGYSQQLHKCIVAHSSGQAVFDGNVKVNRQMQGN" gene 29436896..29439918 /locus_tag="TCM_015751" /note="dbxref CacaoGD:Thecc1EG015751" mRNA 29436896..29439918 /locus_tag="TCM_015751" /product="Pentatricopeptide (PPR) repeat-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08800.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08800.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc901t10" CDS 29437490..29439625 /locus_tag="TCM_015751" /codon_start=1 /product="Pentatricopeptide (PPR) repeat-containing protein" /protein_id="EOY24047.1" /db_xref="Phytozome:POPTR_0003s08800.1" /db_xref="TAIR:AT5G46580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LS25" /translation="MAAALSTALDVHFPIAQSDTKRPVFFTKTKTQNPRRKFTISCNS SKSSSKPPKNPPVSPKKTPSLSEQLQPLSTTTLPKKDQACLLSKPKSTWVNPTKPKRS VLSLQRQTRSPYAYNPKVRELKLFAKKLNDCENSEDAFLSVLEEIPQQPTRENVLLIL NSLKPWQKAHLFFNWIKTKNLFPMETIFYNVTMKSLRFGRQFELIEELANEMVSNEIP LDNITYSTIITCAKRCYLFDKAVEWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVL NLYERGVASGWKPDPIAFSVLAKMFGEAGDYDGIRYVLQEMKSFGVQPNLVVYNTLLE AMGKAGKPGLARNLFEELLESGLTPNEKTLTALAKIYGKARWAKDALELWEEMKSKKW PMDFILYNTLLNMCADVGLVEEAEKLFADMKQSEHCGPDSWSYTAMLNIYGSGGNVGK AMELFEEMSKVGVELNVMGSTCLIQCLGKARRMDELVRVFSVSVEQGIKPDDRLCGCL LSVVSLCEKREDMDKVLACLQQANPRLVAFVKLIEEEKSSLDTVKEEFKGIISDTTDD ARRPFCNCLIDICRSKNLHERAHDLLYLGTVYGLYPGLHNKTVNEWSLDVRSLSVGAA QTALEEWMGTLAKIVKREEALPELFSAQTGTGTHRFSQGLSNAFASHLKKLAVPFRQS EEKAGCFVATREDLVLWLQSRIPSPAVTA" gene complement(29439602..29446930) /locus_tag="TCM_015752" /note="dbxref CacaoGD:Thecc1EG015752" mRNA complement(join(29439602..29439758,29439834..29440644, 29440875..29440993,29444537..29446494)) /locus_tag="TCM_015752" /product="Poltergeist like 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035657" /inference="similar to AA sequence:frave:gene10726" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1131t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9059t2" mRNA complement(join(29440030..29440644,29440875..29441139, 29441540..29441653,29444538..29446930)) /locus_tag="TCM_015752" /product="Poltergeist like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035657" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004976t1" /inference="similar to AA sequence:frave:gene10726" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9059t2" mRNA complement(join(29440302..29440644,29440875..29440992, 29441091..29441139,29441540..29441653,29444538..29446494)) /locus_tag="TCM_015752" /product="Poltergeist like 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035657" /inference="similar to AA sequence:frave:gene10726" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1147t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9059t2" CDS complement(join(29440520..29440644,29440875..29441139, 29441540..29441653,29444538..29446394)) /locus_tag="TCM_015752" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene10726; paralog of Thecc1EG004976t1" /codon_start=1 /product="Poltergeist like 1 isoform 1" /protein_id="EOY24048.1" /db_xref="TAIR:AT2G35350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTA4" /translation="MGSGVSTLCPCFNPVTSRSNRQPDNQPDLIFASSEPLDETLGHS FCYVRSSNRFLSPTPSDRFVSPSHSLRFSPPHDPKTRTGPETLFKAISGASVSANTST PRTVLQLDNIYDDATENTLGYGVKSSIVSGNGFESTSSFSALPLQPVPRGVAHVPMER GGFFMSGPLERGAVSGPLEANPGPEGRVHFSAPLGGIYVKKKRKKGITGILRNFSEKK RPWVVPVLNFVGRRENSEEAEAAAVVEGKTEGDVQWALGKAGEDRVHVVVSEEQGWLF VGIYDGFNGPDAPEFLMGNLYRAVFHELHGLFWELDEETENEAENKTNAPDLIIATDS SNKTDTETENQQKSVEEVKSAGEGLIGENESSGVVQERTRRVTFESEGTEIRRRRLWE FLAEDDPEDGLDLSGSDRFAFSVDDAISVSKEGTAVSRRWLLLSKLKQGLSKHRDGSG SLLFPWRFGLEEKEKVEEVGNRVEERVQETGRRRKEGPVDHELVLRALSRALEVTELA YLDMTDKVLGTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYELEEVGSSMEG RKREENGSSMEGIVEETLAIGEKAIKPVSEAPPQPMRLTALQLSTDHSTSIEEEVIRI KNEHPDDSHCIVNDRVKGRLKVTRAFGAGFLKKPKLNDALLEMFRNEYIGTAPYISCS PSICHHRLCPRDQFLILSSDGLYQYLSNQEVVSLVESFMEKFPDGDPAQHLIEELLFR AAKKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL" CDS complement(join(29440958..29440992,29441091..29441139, 29441540..29441653,29444538..29446394)) /locus_tag="TCM_015752" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene10726" /codon_start=1 /product="Poltergeist like 1 isoform 2" /protein_id="EOY24049.1" /db_xref="TAIR:AT2G35350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTA4" /translation="MGSGVSTLCPCFNPVTSRSNRQPDNQPDLIFASSEPLDETLGHS FCYVRSSNRFLSPTPSDRFVSPSHSLRFSPPHDPKTRTGPETLFKAISGASVSANTST PRTVLQLDNIYDDATENTLGYGVKSSIVSGNGFESTSSFSALPLQPVPRGVAHVPMER GGFFMSGPLERGAVSGPLEANPGPEGRVHFSAPLGGIYVKKKRKKGITGILRNFSEKK RPWVVPVLNFVGRRENSEEAEAAAVVEGKTEGDVQWALGKAGEDRVHVVVSEEQGWLF VGIYDGFNGPDAPEFLMGNLYRAVFHELHGLFWELDEETENEAENKTNAPDLIIATDS SNKTDTETENQQKSVEEVKSAGEGLIGENESSGVVQERTRRVTFESEGTEIRRRRLWE FLAEDDPEDGLDLSGSDRFAFSVDDAISVSKEGTAVSRRWLLLSKLKQGLSKHRDGSG SLLFPWRFGLEEKEKVEEVGNRVEERVQETGRRRKEGPVDHELVLRALSRALEVTELA YLDMTDKVLGTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYELEEVGSSMEG RKREENGSSMEGIVEETLAIGEKAIKPVSEAPPQPMRLTALQLSTDHSTSIEEEVIRI KNEHPDDSHCIVNDRVKGRLKVTRAFGAGFLKKPKLNDALLEMFRNEYIVSEQSGSGF SC" CDS complement(join(29440986..29440993,29444537..29446394)) /locus_tag="TCM_015752" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene10726" /codon_start=1 /product="Poltergeist like 1 isoform 3" /protein_id="EOY24050.1" /db_xref="TAIR:AT2G35350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTA4" /translation="MGSGVSTLCPCFNPVTSRSNRQPDNQPDLIFASSEPLDETLGHS FCYVRSSNRFLSPTPSDRFVSPSHSLRFSPPHDPKTRTGPETLFKAISGASVSANTST PRTVLQLDNIYDDATENTLGYGVKSSIVSGNGFESTSSFSALPLQPVPRGVAHVPMER GGFFMSGPLERGAVSGPLEANPGPEGRVHFSAPLGGIYVKKKRKKGITGILRNFSEKK RPWVVPVLNFVGRRENSEEAEAAAVVEGKTEGDVQWALGKAGEDRVHVVVSEEQGWLF VGIYDGFNGPDAPEFLMGNLYRAVFHELHGLFWELDEETENEAENKTNAPDLIIATDS SNKTDTETENQQKSVEEVKSAGEGLIGENESSGVVQERTRRVTFESEGTEIRRRRLWE FLAEDDPEDGLDLSGSDRFAFSVDDAISVSKEGTAVSRRWLLLSKLKQGLSKHRDGSG SLLFPWRFGLEEKEKVEEVGNRVEERVQETGRRRKEGPVDHELVLRALSRALEVTELA YLDMTDKVLGTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYELEEVGSSMEG RKREENGSSMEGIVEETLAIGEKAIKPVSEAPPQPMRLTALQLSTDHSTSIEEGI" gene 29446783..29447845 /locus_tag="TCM_015753" /note="dbxref CacaoGD:Thecc1EG015753" mRNA 29446783..29447845 /locus_tag="TCM_015753" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.77 coverage" CDS 29446835..29447116 /locus_tag="TCM_015753" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24051.1" /translation="MPDGKIGGPHRLPGGKVRSTGGLFHFLVFSFGGLPVSGAGAGAG VKIKMTRESLRGNGFKESGRVKCGKPRWDVGVKGLSFRGCFCPFRCLVK" mobile_element 29448903..29448965 /note="source:scaffold_1_CACTA_0031 28 93" /mobile_element_type="transposon:TIR/CACTA" gene complement(29455277..29456508) /locus_tag="TCM_015754" /note="dbxref CacaoGD:Thecc1EG015754" mRNA complement(29455277..29456508) /locus_tag="TCM_015754" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(29455708..29455947) /locus_tag="TCM_015754" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24052.1" /translation="MGQRAVAVHSIFFLHFLPTSGRGLNLYRVSNLPEPNSIKTLGLL KIVLMIVKMVGFDESYGNNRTRSNYKIKSAAVHGL" gene complement(29457059..29460344) /locus_tag="TCM_015755" /note="dbxref CacaoGD:Thecc1EG015755" mRNA complement(join(29457059..29457290,29457762..29457826, 29458484..29458593,29458679..29458757,29458859..29458929, 29459210..29459342,29460038..29460344)) /locus_tag="TCM_015755" /product="Ubiquitin family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013176001" /inference="similar to AA sequence:Phytozome:Glyma17g16450.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05797t00001" CDS complement(join(29457197..29457290,29457762..29457826, 29458484..29458593,29458679..29458757,29458859..29458929, 29459210..29459342,29460038..29460157)) /locus_tag="TCM_015755" /codon_start=1 /product="Ubiquitin family protein" /protein_id="EOY24053.1" /db_xref="Phytozome:Glyma17g16450.1" /db_xref="TAIR:AT2G35360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2Q0" /translation="MRMEEIVEETDGKHEKMAEITLKTVGPARPTRLHVPSSIRVLDL RKLIAGKNRLPVENLKLILRGKVLHDREDGDDIYIQLNDGDSLIVAVKPKPPVGHDID DDDEDLKFQLPQSTSRWQKKLYSFLHNRLRLPDILLIAIFSLSLKAWAFIILWFILAP VAHKWDLGPLFILGTGFCIIFLNLGRRQPGDVSAYSIFNEDFRELPGTLNADAIDRDI RTGQF" mobile_element 29460402..29460779 /note="source:CACAO_M_S_E5860_F197_scaffold_2 11247 11661" /mobile_element_type="retrotransposon:LTR/Copia" gene 29461180..29462989 /locus_tag="TCM_015756" /note="dbxref CacaoGD:Thecc1EG015756" mRNA join(29461180..29461294,29461384..29461472, 29462223..29462393,29462581..29462989) /locus_tag="TCM_015756" /product="Single hybrid motif superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013175001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006057t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013175001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8988t1" CDS join(29461186..29461294,29461384..29461472, 29462223..29462393,29462581..29462709) /locus_tag="TCM_015756" /note="paralog of Thecc1EG006057t1" /codon_start=1 /product="Single hybrid motif superfamily protein" /protein_id="EOY24054.1" /db_xref="Phytozome:GSVIVT01013175001" /db_xref="TAIR:AT1G32470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P16048" /translation="MALRMWASSTANALKISCASKAHLSPAFSLSRCFSTVLDGLKYA NSHEWVKHEGSVATIGITDHAQDHLGEVVFVDLPEPGGSVSQGKGFGAVESVKATSDV NSPISGEVVEVNSKLTEAPGLINSSPYEDGWIIKVKPSSPSELESLMGPKEYTKFCEE EDASH" mobile_element complement(29463419..29463613) /note="source:INTACT639F_F363_scaffold_5-int 8353 8571" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(29463626..29465009) /locus_tag="TCM_015757" /note="dbxref CacaoGD:Thecc1EG015757" mRNA complement(join(29463626..29464055,29464184..29464619, 29464759..29465009)) /locus_tag="TCM_015757" /product="Ent-kaurenoic acid oxidase, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015760t1" /inference="similar to AA sequence:Phytozome:Glyma01g40820.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(join(29463918..29464055,29464184..29464619, 29464759..29464898)) /locus_tag="TCM_015757" /note="paralog of Thecc1EG015760t1" /codon_start=1 /product="Ent-kaurenoic acid oxidase, putative" /protein_id="EOY24055.1" /db_xref="Phytozome:Glyma01g40820.1" /db_xref="TAIR:AT1G05160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8PJR6" /translation="MGLDFRPVNIAVVVGLGTYVFLLVFLGKLMSGTMSAGWERGTFS SSSPSIIVCIPETCKKILTDERFAPGYPISVRKLTGSKSFHSVSNSEHRRLRKLTTAP INGHEALAMYIGYIENIVITDLEEWTSMNRPIEFLKEMERVTFKVLTHIFMGSGAESI RESTEKYHNDFHHGLLSAAYNIPAFPFHKALKARNMFVKIFHDVLDERRSKSDHPYET RGMIDLLMKIEDENGEKVQ" mobile_element 29465136..29465320 /note="source:CACAO_Again_on_E217_scaffold_10 27 216" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(29465311..29465400) /note="source:scaffold_6_CACTA_0714 13422 13509" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29465405..29465912) /note="source:CACAO_hAT_E2547_scaffold_5 2 527" /mobile_element_type="transposon:TIR/hAT" gene complement(29465920..29473518) /locus_tag="TCM_015758" /note="dbxref CacaoGD:Thecc1EG015758" mRNA complement(join(29465920..29466562,29466842..29466963, 29467148..29467254,29467344..29467422,29467635..29467724, 29467968..29468228,29468328..29468808,29469013..29469141, 29469515..29469595,29472654..29472775,29473029..29473518)) /locus_tag="TCM_015758" /product="Cytochrome P450 88D6, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035613" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015760t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g8996t1" CDS complement(join(29466469..29466562,29466842..29466963, 29467148..29467254,29467344..29467422,29467635..29467724, 29467968..29468228,29468328..29468808,29469013..29469141, 29469515..29469595,29472654..29472775,29473029..29473256)) /locus_tag="TCM_015758" /note="paralog of Thecc1EG015760t1" /codon_start=1 /product="Cytochrome P450 88D6, putative" /protein_id="EOY24056.1" /db_xref="TAIR:AT2G32440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B5BSX1" /translation="MPSLILGGKPLCFISSSGHKRFRRLTSGHINGHDTLSKYIETIE EVVFTTLEEWTRTDQPIEFYRGMNLFSKIEEPDLKPIAWSFQPFEEGSMNCPGADLAK LEISIFLYYFPLNYNVQYLVNGELLVLTRKVLPKWLELNDEKLGKKQNPLPPGDMGWP FIGNMWSFLRAFKSQDPDSFINNLIKRHGRTSIYKTHLFGSPSVIVCSPELCRKVLTD DEHFLFGYPSSATQLGGKKSLYGISNSEHRRLRRLTTDPINGHEALALYIGHIEDIVI TSLEDLGGMNRPIKFFNEMKRIGFKVIAQIFLGSTQESVLSSMVKYYTELFPGVLSIP INLPGFAFHKALKARKKLVKTIQAELYVRRAQKTMVPNRKKGMMDLLMEVKNENGEKL EDEHIIDLLLLILFAGHETTAHTAMWAIIHLHDHPEMLQKAKEEQEAIIKRRSSSQKG LTLTEIKQMEYLPKVIDESLRRSNFAFSIFRKVEADVNINGYTIPNGWKVLVWHRAIH MDPNIYSNPKEFLPSRWENHRFKARSFIPFGAGSRTCPGADLGKLEISIFLHYFLLNY KLEEVNPRGPINYLPLPRPADNCLARIIKLP" mobile_element 29467122..29467217 /note="source:CACAO_Mariner_E265_scaffold_10 3832 3927" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 29470366..29471267 /note="source:CACAO_M_E49279_F74_scaffold_6 1076 1959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29474934..29475033) /note="source:scaffold_6_CACTA_0709 2596 2704" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29475861..29475957 /note="source:CACAO_on_SS_E42_scaffold_2 23363 23457" /mobile_element_type="transposon:TIR/Mutator" mobile_element 29475887..29475973 /note="source:CACAO_Again_on_E187_scaffold_8 6 91" /mobile_element_type="transposon:TIR/hAT" mobile_element 29475970..29476225 /note="source:CACAO_hAT_E71_scaffold_1 573 864" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(29476054..29476097) /note="source:scaffold_3_CACTA_0398 3358 3666" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29476098..29476424 /note="source:CACAO_on_SS_E42_scaffold_2 24191 24534" /mobile_element_type="transposon:TIR/Mutator" gene 29478127..29481561 /locus_tag="TCM_015759" /note="dbxref CacaoGD:Thecc1EG015759" mRNA join(29478127..29478470,29479794..29480058, 29480318..29480523,29480623..29481124,29481337..29481561) /locus_tag="TCM_015759" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(29479930..29480058,29480318..29480523, 29480623..29481115) /locus_tag="TCM_015759" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24057.1" /translation="MWQVKLKRQLSNWEIAQWEQLQELLCEFQLNKELKDALIWKQER HGKSGWDGVEIGMLFGSLLGMLKEFLKLGMDVSWEIWIKELGKRVFFLWYGLFGKTKM KRSSEEKSGIHQCKGNSLTKDKKGNLLGKASEWTAKIQNQRGDERMPRLNWNWRYLRD SNGEVKILFSKHIDTTDSNEAEILAVREAFLIFMASQWKDNHRLLIESDSANVVKWIN NANTAPWRKRKWVLQIGSMKKELTGWEIRHVLREANQRAGDLAKEGVLLQTGILRVF" gene complement(29480654..29484701) /locus_tag="TCM_015760" /note="dbxref CacaoGD:Thecc1EG015760" mRNA complement(join(29480654..29481557,29482041..29482125, 29482211..29482332,29482437..29482556,29482657..29482710, 29482812..29482901,29483029..29483292,29483713..29484193, 29484401..29484701)) /locus_tag="TCM_015760" /product="Ent-kaurenoic acid hydroxylase 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g40820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015758t1" /inference="similar to AA sequence:Phytozome:Glyma01g40820.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc11659t1" CDS complement(join(29481456..29481557,29482041..29482125, 29482211..29482332,29482437..29482556,29482657..29482710, 29482812..29482901,29483029..29483292,29483713..29484193, 29484401..29484633)) /locus_tag="TCM_015760" /note="paralog of Thecc1EG015758t1" /codon_start=1 /product="Ent-kaurenoic acid hydroxylase 2" /protein_id="EOY24058.1" /db_xref="Phytozome:Glyma01g40820.1" /db_xref="TAIR:AT2G32440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C5Y2" /translation="MDLGFLALVLAVLLGTYVFLFGFLKKVNEWRYVSSLGEKKHSLP PGDMGWPMFGNMGSFLRAFRSKNPDTFIYDLVKRYGRTGIYKTYLFGSPSIIVSIPET CRKVLADDERFGLGYPVSTKQLTGKKSFHSIPNSEHKRLRRLTTAPINGHEALAMYIG YIEDIVINSLDEWASMKEPIELLKEMRKVAFKVITHIFVGSSAESILGTVEKHYTDLN YGLKSAAINIPGFAFYKALKARNTLVKILQGVLDERRSKSQVNDPNEKRGMVDLLMDI EDEHGQKLQDEDIIDLLLMFLLAGHESSAHAAMWAIIYLHDHPEILQKAKEEQDQILK KRPSTQKGLTLKDIREMNYLQKVIDETLRRTSLSFANFRQGFSPGYLIPKGWKVLVWN RGVHMDPEVYSNPKEFIPARWENHTPKAGSFLPFGAGSRICPGADLAKLEISIFLHYF LLNYKLEQIKPGGPMVYLPLPRPVDNCLAKVTKQRIIHFQTKEKEHSPLLYIEEAVTK TIGSHIPV" mobile_element 29481509..29481578 /note="source:CACAO_Mutator_E714_scaffold_3 808 865" /mobile_element_type="transposon:TIR/Mutator" mobile_element 29482431..29482497 /note="source:CACAO_Mariner_E265_scaffold_10 3852 3918" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 29484905..29484989 /note="source:CACAO_PIF_E38_scaffold_2 1289 1378" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 29484917..29485008 /note="source:CACAO_M_E59539_F98_scaffold_9 2036 2114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29486433..29486517 /note="source:CACAO_M_E49205_F4_scaffold_6 9380 9463" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(29489371..29490182) /note="source:CACAO_MITE135_scaffold_9 2 831" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(29490011..29490206) /note="source:CACAO_on_E446_scaffold_2 930 1149" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 29490307..29490472 /note="source:CACAO_Mutator_E592_scaffold_3 20479 20622" /mobile_element_type="transposon:TIR/Mutator" mobile_element 29490351..29490520 /note="source:scaffold_4_CACTA_0503 6805 6970" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29490798..29490923) /note="source:scaffold_4_CACTA_0503 6935 7069" /mobile_element_type="transposon:TIR/CACTA" gene complement(29491948..29494778) /locus_tag="TCM_015761" /note="dbxref CacaoGD:Thecc1EG015761" mRNA complement(join(29491948..29493674,29494329..29494778)) /locus_tag="TCM_015761" /product="Anthranilate N-benzoyltransferase protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g05450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010738t1" /inference="similar to AA sequence:Phytozome:Glyma15g05450.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6113t1" CDS complement(29492186..29493520) /locus_tag="TCM_015761" /note="paralog of Thecc1EG010738t1" /codon_start=1 /product="Anthranilate N-benzoyltransferase protein, putative" /protein_id="EOY24059.1" /db_xref="Phytozome:Glyma15g05450.1" /db_xref="TAIR:AT3G26040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAL9" /translation="MIEIKSEIVSRQTIKPSTPTPSDLKTFKLSLLDQLSPAVHGNMT FFYPSSNTMDSIGDDFSEKSQLLQESISKTLSLFYPLGGRLQDAATIDCNDEGAFFAE AKVNIQLSEFLNQPEFNLMDHFLPTTDTKTMELSNGAMFIVQLTSFTCGGVAISLSLT HKLADVSALLTLLQSWTAVCRGLSDPVTPDLIGEKFLAPRDELSAMSASLNIAAEKFV LRRFVFSASKIAELKAKVDQEFQNEMQSHPSRVEVVLALLWKCAVACKKQKTGSFGPT ALFQAVNLRKRMSPPLPETAIGNFIWPFMVLAHEEKDLKLPELVIQMRKSFIEFNNTK ANMFRGEAAPLAIMGALKERGEFFRNNREMTVYKCSSWCKFPLYDTDFGWGKPLWHVS INKLVSNTIALADTRSRDGIEALLTLDEEEMALFEQNEELLKYATPNPSIYA" gene complement(29496021..29498317) /locus_tag="TCM_015762" /note="dbxref CacaoGD:Thecc1EG015762" mRNA complement(join(29496021..29496598,29497896..29497963, 29498285..29498305)) /locus_tag="TCM_015762" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02790.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03645t00001" mRNA complement(join(29496083..29496598,29498285..29498317)) /locus_tag="TCM_015762" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02790.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9019t3; alternateUTRof:Thecc1EG015762t1; inference alignment:Newbler:10:TSA:cgbaL_g03645t00001" CDS complement(29496339..29496581) /locus_tag="TCM_015762" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24060.1" /translation="MDSKVSSDKVSQELARELLIAISYSVPDTDDHASKNVDSANGVA VANADGAEKYRSELISISYAQSPDAQVPPVVGNHVD" CDS complement(29496339..29496581) /locus_tag="TCM_015762" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24061.1" /translation="MDSKVSSDKVSQELARELLIAISYSVPDTDDHASKNVDSANGVA VANADGAEKYRSELISISYAQSPDAQVPPVVGNHVD" mobile_element complement(29498580..29498929) /note="source:scaffold_1_CACTA_0008 14053 14406" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29500858..29501624 /note="source:CACAO_Again_on_E210_scaffold_9 495 1317" /mobile_element_type="transposon:TIR/hAT" mobile_element 29502721..29503019 /note="source:MITE_CACTA_9 1 299" /mobile_element_type="transposon:TIR/MITE" mobile_element 29503331..29503431 /note="source:scaffold_8_CACTA_0858 14201 14283" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29503355..29503659) /note="source:scaffold_4_CACTA_0505 10774 11076" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29503593..29504064 /note="source:scaffold_9_CACTA_0946 17777 18267" /mobile_element_type="transposon:TIR/CACTA" gene 29508623..29513946 /locus_tag="TCM_015765" /note="dbxref CacaoGD:Thecc1EG015765" mRNA join(29508623..29509224,29509603..29509717, 29511815..29512032,29512178..29512740,29512835..29513946) /locus_tag="TCM_015765" /product="Nitrate transporter 1.5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042339t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02810.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04458t00001" CDS join(29509198..29509224,29509603..29509717, 29511815..29512032,29512178..29512740,29512835..29513705) /locus_tag="TCM_015765" /note="paralog of Thecc1EG042339t1" /codon_start=1 /product="Nitrate transporter 1.5" /protein_id="EOY24062.1" /db_xref="Phytozome:POPTR_0001s02810.1" /db_xref="TAIR:AT1G32450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQL2" /translation="MACLEVCKEGKVKEDQGACTQDGTIDWHGRPAIRAKSGQWTAGI IILLNQGLATLAFFGVGVNLVLFLTRVLGQNNADAANNVSKWTGTVYIFSLVGAFLSD SYWGRYKTCAIFQVIFVIGLVSLSLSSYLFLVRPRGCGNQETPCGSHSGLEITLFYLS IYLVALGNGGYQPNIATFGADQFDEEDPEEGHSKVAFFSYFYLALNLGSLFSNTILGY FEDEGMWALGFWVSAGSALAALGLFLAGTTRYRHFKPSGNPLPRFCQVIVAATKKCSI DLPPDADDLYDVDGNDSSMNGNRKILHTNEFKFLDRAAYISTRDVDDQKKGIYSPWRL CPVTQVEEVKCILRLLPIWLCTIIYSVVFTQMASLFVEQGAAMTTTISNFRIPPASMS SFDILSVALFIFLYRRVLDPLVGRIRKKDSRGLTELQRMGIGLVIAILAMVSAGIVEC YRLKYASRDCTHCEGSSSLSIFWQVPQYAFIGASEVFMYVGQLEFFNAQTPDGLKSFG SALCMTSISLGNYVSSLLVTMVMKISTEDHMPGWIPGNLNKGHLDRFYFLLAGLTTID LVVYIACATWYKCIKLEGKTAENDKQGSFKV" gene complement(29514104..29519981) /locus_tag="TCM_015766" /note="dbxref CacaoGD:Thecc1EG015766" mRNA complement(join(29514104..29514405,29514540..29514624, 29514782..29514953,29515350..29515458,29515756..29515904, 29516124..29516226,29516851..29517026,29517513..29517575, 29517696..29517784,29517880..29517990,29518111..29518245, 29518698..29518863,29519155..29519433,29519519..29519981)) /locus_tag="TCM_015766" /product="Pyruvate kinase isozyme G, chloroplastic" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015300t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08700.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05042t00001" CDS complement(join(29514840..29514953,29515350..29515458, 29515756..29515904,29516124..29516226,29516851..29517026, 29517513..29517575,29517696..29517784,29517880..29517990, 29518111..29518245,29518698..29518863,29519155..29519433, 29519519..29519740)) /locus_tag="TCM_015766" /note="paralog of Thecc1EG015300t1" /codon_start=1 /product="Pyruvate kinase isozyme G, chloroplastic" /protein_id="EOY24063.1" /db_xref="Phytozome:POPTR_0003s08700.1" /db_xref="TAIR:AT1G32440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q40546" /translation="MATITSLTDAASIAAADISSFRNVTDNSLFESGIHRTKRRLFFR KGDAAFSIRSMKITPARTGTLTCSNGRLNADKLNPTVELLKVGALGQVKMNSSSRRKT KIVCTIGPSTSSREMIWKLAEAGMNVARLNMSHGDHSSHQKTIDLVKEYNAQFEDKVI AIMLDTKGPEVRSGDVPQPIQLKEGQEFNFTIKRGVSSENTVSVNYDDFVNDVEVGDI LLVDGGMMSLAVKAKTKDLVKCVVVDGGELKSRRHLNVRGKSATLPSITDKDWEDIKF GVDNQVDFYAVSFVKDARVVHELKDYLKGCNADIHVIVKIESADSIPNLHSIISASDG AMVARGDLGAELPIEEVPLLQEDIIRRCRSMHKPVIVATNMLESMINHPTPTRAEVSD IAIAVREGADAIMLSGETAHGKYPIKAVKVMHTVALRTESSLPVSIMPPVRFNAYKSH MGEMFAFHSTTMANTLNTPIIVFTRTGSMAILLSHYRPSSSIFAFTNEERIKQRLALY QGVMPIYMQFSDDAEETFSRALKLLMDKNLVKEGEHVTLVQSGAQPIWRRESTHHIQV RKVQA" gene complement(29520367..29522228) /locus_tag="TCM_015767" /note="dbxref CacaoGD:Thecc1EG015767" mRNA complement(join(29520367..29520484,29520609..29520794, 29521720..29521821,29522070..29522228)) /locus_tag="TCM_015767" /product="NAD(P)-linked oxidoreductase superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015486t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s00930.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1945t1" CDS complement(join(29520413..29520484,29520609..29520794, 29521720..29521821,29522070..29522168)) /locus_tag="TCM_015767" /note="paralog of Thecc1EG015486t1" /codon_start=1 /product="NAD(P)-linked oxidoreductase superfamily protein, putative" /protein_id="EOY24064.1" /db_xref="Phytozome:POPTR_0015s00930.1" /db_xref="TAIR:AT5G53580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NKP1" /translation="MQIKQIGIGQLHWSTANHAPPQELAPWGDLVGNGLVKAIGVSNY GSKQLVKIYDYLKARGVPLCSAQVQFSLLSMGEEQMEIKDICDSLGIRLISYSHLGLG MLMGKCTPPRFPSGPRYCEDIHLPSIQDVEHVTYTALCEEYPSVAVPNNT" gene complement(29522701..29523195) /locus_tag="TCM_015769" /note="dbxref CacaoGD:Thecc1EG015769" mRNA complement(join(29522701..29522978,29523192..29523195)) /locus_tag="TCM_015769" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc409t16_C1" CDS complement(29522760..29522954) /locus_tag="TCM_015769" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24065.1" /translation="MGPLCLQWGLGLGHGATSFSGVSSNQRIMNFNKFSILPWRMISI FLILRILMGLENSMDRVKNF" mobile_element 29523040..29523257 /note="source:scaffold_1_CACTA_0016 11240 11460" /mobile_element_type="transposon:TIR/CACTA" gene 29524587..29526676 /locus_tag="TCM_015770" /note="dbxref CacaoGD:Thecc1EG015770" mRNA 29524587..29526676 /locus_tag="TCM_015770" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02830.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02830.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09076t00001" CDS 29525065..29526258 /locus_tag="TCM_015770" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24066.1" /db_xref="Phytozome:POPTR_0001s02830.1" /db_xref="TAIR:AT3G57990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTZ1" /translation="MKLSLKLQDDQNPLLKAKIPISIFSQPFISSLTTTTPTTSSNKS SQDTSFSLSTNFPSGPSLKLSYAPSTSPTTTIPFSISLKSGLGLLGSPKDSPLVFTAQ FSLSSAKPGTVIPTFSLHFKPQFGNFALHKATSSNPSLEPDSGSHSIPGTQFQSGSSS NSEFGNGFALDGSSVWQEVKLEPRSGVDDGLETSKLGYGKGLYSNDGFGTERSLVRED GKKAGIFGGIAVRARTLFPVTKRAVVNLRWAVNLPSDVGSKMPYLTVNKIGIERVEEV KEVTEVKSKSIESNVDDLELLKGMYSWMKRDLETLENENREMKQCLHDMRLGVSAKNV RRESEGIGRRVSTPSVENSNEFERWRGKKIVADDNGGREVKKSVNKMNDVESELQKAI KAASS" gene 29527446..29531103 /locus_tag="TCM_015771" /note="dbxref CacaoGD:Thecc1EG015771" mRNA join(29527446..29528024,29528545..29528700, 29529609..29529674,29529772..29529836,29530259..29530349, 29530512..29531103) /locus_tag="TCM_015771" /product="Tobamovirus multiplication 2B protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013242001" /inference="similar to AA sequence:Phytozome:POPTR_0001s02840.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc844t9_C1" mRNA join(29528451..29528700,29529606..29529674, 29529772..29529836,29530259..29530349,29530512..29531047) /locus_tag="TCM_015771" /product="Tobamovirus multiplication 2B protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013242001" /inference="similar to AA sequence:Phytozome:POPTR_0001s02840.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9017t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc844t9_C1" CDS join(29528551..29528700,29529606..29529674, 29529772..29529836,29530259..29530349,29530512..29530559) /locus_tag="TCM_015771" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tobamovirus multiplication 2B protein isoform 2" /protein_id="EOY24068.1" /db_xref="Phytozome:POPTR_0001s02840.1" /db_xref="TAIR:AT1G32370.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L9F1" /translation="MATAGGGGGNVKGTSSREGTAKSIVTEQISQAVQSTSNLLHLMQ QSSPSQQTQLMKLPKNLLAKAPTIKNTGQMLEQMPRVISVLDAQIDSGLQSVPHLKTV IQLLENMESCHLSSLSQAHFSQGESQQANQHPKAGSPP" CDS join(29528551..29528700,29529609..29529674, 29529772..29529836,29530259..29530349,29530512..29530559) /locus_tag="TCM_015771" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tobamovirus multiplication 2B protein isoform 1" /protein_id="EOY24067.1" /db_xref="Phytozome:POPTR_0001s02840.1" /db_xref="TAIR:AT1G32370.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L9F1" /translation="MATAGGGGGNVKGTSSREGTAKSIVTEQISQAVQSTSNLLHLMQ QSSPSQTQLMKLPKNLLAKAPTIKNTGQMLEQMPRVISVLDAQIDSGLQSVPHLKTVI QLLENMESCHLSSLSQAHFSQGESQQANQHPKAGSPP" gene 29532802..29537004 /locus_tag="TCM_015773" /note="dbxref CacaoGD:Thecc1EG015773" mRNA join(29532802..29533126,29533580..29533753, 29534262..29534510,29534835..29534978,29535099..29535266, 29535597..29535666,29535956..29536037,29536147..29537004) /locus_tag="TCM_015773" /product="Phosphoribosyltransferase family protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G32380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042341t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02860.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04971t00001" CDS join(29532980..29533126,29533580..29533753, 29534262..29534510,29534835..29534978,29535099..29535266, 29535597..29535666,29535956..29536037,29536147..29536327) /locus_tag="TCM_015773" /note="paralog of Thecc1EG042341t1" /codon_start=1 /product="Phosphoribosyltransferase family protein" /protein_id="EOY24069.1" /db_xref="Phytozome:POPTR_0001s02860.1" /db_xref="TAIR:AT2G35390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42581" /translation="MVSLSIPSPVKSSSFLSSSSSSLFARCSLSYKGFAFNEPRSRIC AANSFKCDLPQPLNYGNGKPTIPILNERTLPKFLESARMETTVNRNGAKLKLFSGTAN PALSQEIAWYMGLELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMEL LIMVDACRRASAKTITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACD LHSGQSMGYFDIPVDHVYCQPVILDYLASKRICSDDLVVVSPDVGGVARARAFAKKLS DAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGARE VYACCTHAVFSPPAIERLSGGLFQEVIITNTLPVAEKNYFPQLTVLSVANLLGETIWR VHDDCSVSSIFQ" gene complement(29539946..29541865) /locus_tag="TCM_015774" /note="dbxref CacaoGD:Thecc1EG015774" mRNA complement(join(29539946..29540458,29540546..29540870, 29540953..29541200,29541286..29541561,29541661..29541865)) /locus_tag="TCM_015774" /product="S-norcoclaurine synthase 1, putative" /inference="alignment:exonerate- protein:2:ricco:30054.m000793" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032155t1" /inference="similar to AA sequence:ricco:30054.m000793" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03830t00001" CDS complement(join(29540219..29540458,29540546..29540870, 29540953..29541200,29541286..29541561,29541661..29541723)) /locus_tag="TCM_015774" /note="dbxref ricco:30054.m000793; paralog of Thecc1EG032155t1" /codon_start=1 /product="S-norcoclaurine synthase 1, putative" /protein_id="EOY24070.1" /db_xref="TAIR:AT1G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2A1A0" /translation="MTFGVEVVRQGRQSLKALWKKETGLSSNENLRMESEGLIRDGFG GSLPVENVQALASKNLKDIPSRYIRPEVEFDVIALDESLEIPVIDRSKLGHADELEKL HWACKDWGFFQLINHGVGDEVIEKMKIDIQEFFELPLEEKMACAQLPNNIEGYGQAFV VSEDQKLDWGDMLFLLPQPVPIRNMRFWPTIPSSFRETLEKYSMELQKVATHLMRLMA KNLGTDLETLASFFEDGTQGIRMNYYPTCAQANKVIGLSPHSDATALTLLIQGNEVDG LQIKKNGKWVPVKPIPGTFVINIGDVIEIMSNGEYKSIEHRAVVNPVTERLSIAAFHS PNRSTKIGPLTDLVKAKEAKYRTISHEEFVKLSVSSKLDGKGLLEQMKL" mobile_element complement(29541884..29542658) /note="source:scaffold_9_CACTA_0932 2822 3559" /mobile_element_type="transposon:TIR/CACTA" gene complement(29543107..29545374) /locus_tag="TCM_015775" /note="dbxref CacaoGD:Thecc1EG015775" mRNA complement(join(29543107..29543677,29543869..29544034, 29544425..29544616,29544753..29545374)) /locus_tag="TCM_015775" /product="Peroxidase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034114t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02870.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1113t3_C1" CDS complement(join(29543265..29543677,29543869..29544034, 29544425..29544616,29544753..29544968)) /locus_tag="TCM_015775" /note="paralog of Thecc1EG034114t1" /codon_start=1 /product="Peroxidase superfamily protein" /protein_id="EOY24071.1" /db_xref="Phytozome:POPTR_0001s02870.1" /db_xref="TAIR:AT2G35380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SLH7" /translation="MEIMRAFLISLVLVLNAVRVLSDDQLLVLDYYKETCPLAEEIVS RNVEIAVLKDPRMAASLLRLHFHDCFVMGCDASVLLDNYGDIVSEKQAVPNQNSLRGF KVIDEIKYILEEACPLTVSCADILAMVARDAVALRGGPRWKVWLGRKDSLKASFDGAN QFIPAPNSSLETLIANFNEQGLDIEDLVALSGSHTLGKARCLSFRQRIYDINIEEKYD KYKRYRAFRRALRSICPSSGRDNAIAPLDFSTPAKFDNHYFINILGGKGLLGSDNVLV TEDHEGEIIKLVWAYASNQELFFSSFANSVVKMGNINVLTGNEGEIRRLQVC" gene complement(29545461..29552381) /locus_tag="TCM_015776" /note="dbxref CacaoGD:Thecc1EG015776" mRNA complement(join(29545461..29546070,29546248..29546464, 29546618..29546766,29547344..29547452,29547920..29548104, 29548394..29549216,29549899..29550003,29550093..29550180, 29550607..29550699,29550783..29550888,29550989..29551677)) /locus_tag="TCM_015776" /product="Type I inositol polyphosphate 5-phosphatase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035803t2" /inference="similar to AA sequence:ricco:30054.m000788" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9050t3; alternateUTRof:Thecc1EG015776t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc706t2" mRNA complement(join(29545952..29546070,29546248..29546464, 29546618..29546766,29547344..29547452,29547920..29548104, 29548394..29549216,29549899..29550003,29550093..29550180, 29550607..29550699,29550783..29550888,29550989..29551344, 29552016..29552381)) /locus_tag="TCM_015776" /product="Type I inositol polyphosphate 5-phosphatase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035803t2" /inference="similar to AA sequence:ricco:30054.m000788" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc706t2" mRNA complement(join(29545972..29545996,29546248..29546464, 29546618..29546766,29547344..29547452,29547920..29548104, 29548394..29549216,29549899..29550121)) /locus_tag="TCM_015776" /product="Type I inositol polyphosphate 5-phosphatase, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035803t2" /inference="similar to AA sequence:frave:gene10759" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc711t15; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc706t2" CDS complement(join(29546251..29546464,29546618..29546766, 29547344..29547452,29547920..29548104,29548394..29549216, 29549899..29550003,29550093..29550180,29550607..29550699, 29550783..29550888,29550989..29551018)) /locus_tag="TCM_015776" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30054.m000788; paralog of Thecc1EG035803t2" /codon_start=1 /product="Type I inositol polyphosphate 5-phosphatase, putative isoform 1" /protein_id="EOY24072.1" /db_xref="TAIR:AT4G18010.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SNR8" /translation="MKTRRGKRSEAFWPSIVMKKWLNIKPKVYDFSEDEVDTETESED DACSLKDSRLHGGEDHTHRTPGNQSDCRSQISDAPSKGYQLRHRRGKSETLRAQYINT KDVRVTIGTWNVAGRLPCEDLEIDDWLCTNEQADIYIIGFQEVVPLNAGNVLGAEDSR PIPKWEAIIRRTLNKSFEPESKHKCYSAPPSPVLRTSSVADVLVDEIDALPLEMMCDN YLETANAYDFEGQDLNKVADIGQNLQLKRIYGVDFDTRLDWPERSLDATPQVVSSNSK LRRVLSSSARIGFNLTENSIFCSPHDVVLKGSRLKRSHHSSGNLESMWVKAQQKLEVV DSFSEMSDEFSEEEDDTFSEAPMERHDNNRTRSRPTYVRIVSKQMVGIYISVWVRKRL RRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCFVCSHLTSGQKDGAEQRRNT DVYEIIRRTRFSSVLDSDQPQTIPSHDQMFWFGDLNYRLNMSGAEVRKLVALKRWDEL IDNDQLHKELCSGHVFDGWKEGLIDFPPTYKYEMNSDRYVGEIPKEGEKKRSPAWCDR ILWSGKGIKQLCYQRAEIRLSDHRPVSSMFSVEVEVLDHRKLQRALNVSTAAVHPDIF FDENGELEL" CDS complement(join(29546251..29546464,29546618..29546766, 29547344..29547452,29547920..29548104,29548394..29549216, 29549899..29550003,29550093..29550180,29550607..29550699, 29550783..29550888,29550989..29551018)) /locus_tag="TCM_015776" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30054.m000788; paralog of Thecc1EG035803t2" /codon_start=1 /product="Type I inositol polyphosphate 5-phosphatase, putative isoform 1" /protein_id="EOY24073.1" /db_xref="TAIR:AT4G18010.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SNR8" /translation="MKTRRGKRSEAFWPSIVMKKWLNIKPKVYDFSEDEVDTETESED DACSLKDSRLHGGEDHTHRTPGNQSDCRSQISDAPSKGYQLRHRRGKSETLRAQYINT KDVRVTIGTWNVAGRLPCEDLEIDDWLCTNEQADIYIIGFQEVVPLNAGNVLGAEDSR PIPKWEAIIRRTLNKSFEPESKHKCYSAPPSPVLRTSSVADVLVDEIDALPLEMMCDN YLETANAYDFEGQDLNKVADIGQNLQLKRIYGVDFDTRLDWPERSLDATPQVVSSNSK LRRVLSSSARIGFNLTENSIFCSPHDVVLKGSRLKRSHHSSGNLESMWVKAQQKLEVV DSFSEMSDEFSEEEDDTFSEAPMERHDNNRTRSRPTYVRIVSKQMVGIYISVWVRKRL RRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCFVCSHLTSGQKDGAEQRRNT DVYEIIRRTRFSSVLDSDQPQTIPSHDQMFWFGDLNYRLNMSGAEVRKLVALKRWDEL IDNDQLHKELCSGHVFDGWKEGLIDFPPTYKYEMNSDRYVGEIPKEGEKKRSPAWCDR ILWSGKGIKQLCYQRAEIRLSDHRPVSSMFSVEVEVLDHRKLQRALNVSTAAVHPDIF FDENGELEL" CDS complement(join(29546251..29546464,29546618..29546766, 29547344..29547452,29547920..29548104,29548394..29548999)) /locus_tag="TCM_015776" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene10759; paralog of Thecc1EG035803t2" /codon_start=1 /product="Type I inositol polyphosphate 5-phosphatase, putative isoform 3" /protein_id="EOY24074.1" /db_xref="TAIR:AT4G18010.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SNR8" /translation="MMCDNYLETANAYDFEGQDLNKVADIGQNLQLKRIYGVDFDTRL DWPERSLDATPQVVSSNSKLRRVLSSSARIGFNLTENSIFCSPHDVVLKGSRLKRSHH SSGNLESMWVKAQQKLEVVDSFSEMSDEFSEEEDDTFSEAPMERHDNNRTRSRPTYVR IVSKQMVGIYISVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCF VCSHLTSGQKDGAEQRRNTDVYEIIRRTRFSSVLDSDQPQTIPSHDQMFWFGDLNYRL NMSGAEVRKLVALKRWDELIDNDQLHKELCSGHVFDGWKEGLIDFPPTYKYEMNSDRY VGEIPKEGEKKRSPAWCDRILWSGKGIKQLCYQRAEIRLSDHRPVSSMFSVEVEVLDH RKLQRALNVSTAAVHPDIFFDENGELEL" mobile_element complement(29551405..29551502) /note="source:scaffold_3_CACTA_0396 889 989" /mobile_element_type="transposon:TIR/CACTA" gene 29551989..29552919 /locus_tag="TCM_015777" /note="dbxref CacaoGD:Thecc1EG015777" mRNA join(29551989..29552618,29552737..29552919) /locus_tag="TCM_015777" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9052t2" CDS 29552341..29552520 /locus_tag="TCM_015777" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24075.1" /translation="MNCNQRDHMIGITALYVKVKSSGLSTEEPHLLSLTLLFFFFQLF VRFFLFFFFFYFHGF" mobile_element complement(29554295..29554411) /note="source:scaffold_3_CACTA_0396 889 983" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29556134..29557400) /note="source:scaffold_5_CACTA_0614 1445 2649" /mobile_element_type="transposon:TIR/CACTA" gene complement(29559631..29563945) /locus_tag="TCM_015779" /note="dbxref CacaoGD:Thecc1EG015779" mRNA complement(join(29559631..29559800,29560427..29560636, 29561551..29561655,29561747..29561827,29562002..29562101, 29562881..29563197,29563787..29563945)) /locus_tag="TCM_015779" /product="Tobamovirus multiplication 2A isoform 1" /inference="alignment:exonerate- protein:2:ricco:30054.m000787" /inference="similar to AA sequence:Phytozome:Glyma01g40890.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc178t9" mRNA complement(join(29559674..29559800,29560427..29560636, 29561551..29561655,29561747..29561827,29562002..29562101, 29562881..29563147,29563787..29563812)) /locus_tag="TCM_015779" /product="Tobamovirus multiplication 2A isoform 1" /inference="alignment:exonerate- protein:2:ricco:30054.m000787" /inference="similar to AA sequence:Phytozome:Glyma01g40890.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc178t3; alternateUTRof:Thecc1EG015779t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc178t9" mRNA complement(join(29559674..29559800,29560427..29560636, 29561551..29561655,29561747..29561827,29562002..29562101, 29562881..29563295,29563787..29563812)) /locus_tag="TCM_015779" /product="Tobamovirus multiplication 2A isoform 1" /inference="alignment:exonerate- protein:2:ricco:30054.m000787" /inference="similar to AA sequence:Phytozome:Glyma01g40890.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc178t6; alternateUTRof:Thecc1EG015779t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc178t9" CDS complement(join(29559693..29559800,29560427..29560636, 29561551..29561655,29561747..29561827,29562002..29562101, 29562881..29563119)) /locus_tag="TCM_015779" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tobamovirus multiplication 2A isoform 1" /protein_id="EOY24076.1" /db_xref="Phytozome:Glyma01g40890.1" /db_xref="TAIR:AT1G32400.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C5W7" /translation="MACRGCLGCLLKLLNLLMTLVGLAMVGYGIYLFVEYEKASDTAM LLSPAGSDQDLIQLGRPMLMAVSLSSSIFDNLPKAWFIYLFIGVGVVLVIISCFGCIG AATRNLCCLTCYSVLVILLILVELGCAAFIFFDKSWKDELPTDKTGDFDMIYKFLKEH WSIVKWAALGVVILEALIFLLALMVRAANRPVDYDSDDEFMAPRPQIRQPLINRPPVP ATGVPVAGSLEQRSSRNDAWSTRMREKYGLDTSEFTYNPSESNRYQQVTPQPAEERSR CTIM" CDS complement(join(29559693..29559800,29560427..29560636, 29561551..29561655,29561747..29561827,29562002..29562101, 29562881..29563119)) /locus_tag="TCM_015779" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tobamovirus multiplication 2A isoform 1" /protein_id="EOY24077.1" /db_xref="Phytozome:Glyma01g40890.1" /db_xref="TAIR:AT1G32400.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C5W7" /translation="MACRGCLGCLLKLLNLLMTLVGLAMVGYGIYLFVEYEKASDTAM LLSPAGSDQDLIQLGRPMLMAVSLSSSIFDNLPKAWFIYLFIGVGVVLVIISCFGCIG AATRNLCCLTCYSVLVILLILVELGCAAFIFFDKSWKDELPTDKTGDFDMIYKFLKEH WSIVKWAALGVVILEALIFLLALMVRAANRPVDYDSDDEFMAPRPQIRQPLINRPPVP ATGVPVAGSLEQRSSRNDAWSTRMREKYGLDTSEFTYNPSESNRYQQVTPQPAEERSR CTIM" CDS complement(join(29559693..29559800,29560427..29560636, 29561551..29561655,29561747..29561827,29562002..29562101, 29562881..29563119)) /locus_tag="TCM_015779" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Tobamovirus multiplication 2A isoform 1" /protein_id="EOY24078.1" /db_xref="Phytozome:Glyma01g40890.1" /db_xref="TAIR:AT1G32400.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C5W7" /translation="MACRGCLGCLLKLLNLLMTLVGLAMVGYGIYLFVEYEKASDTAM LLSPAGSDQDLIQLGRPMLMAVSLSSSIFDNLPKAWFIYLFIGVGVVLVIISCFGCIG AATRNLCCLTCYSVLVILLILVELGCAAFIFFDKSWKDELPTDKTGDFDMIYKFLKEH WSIVKWAALGVVILEALIFLLALMVRAANRPVDYDSDDEFMAPRPQIRQPLINRPPVP ATGVPVAGSLEQRSSRNDAWSTRMREKYGLDTSEFTYNPSESNRYQQVTPQPAEERSR CTIM" mobile_element complement(29566717..29566799) /note="source:CACAO_M_E69780_F2_scaffold_9 1562 1647" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29567792..29574656) /locus_tag="TCM_015780" /note="dbxref CacaoGD:Thecc1EG015780" mRNA complement(join(29567792..29568587,29568902..29568979, 29569144..29569212,29569346..29569609,29569916..29570056, 29570784..29571338,29571437..29571514,29571818..29571864, 29572038..29572104,29572472..29572551,29573380..29573581, 29574347..29574505)) /locus_tag="TCM_015780" /product="CheY-like two-component responsive regulator family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013234001" /inference="similar to AA sequence:Phytozome:GSVIVT01013234001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9061t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9061t2" mRNA complement(join(29567991..29568587,29568902..29568979, 29569144..29569212,29569346..29569609,29569916..29570056, 29570784..29571338,29571437..29571514,29571818..29571864, 29572038..29572104,29572472..29572551,29573380..29573581, 29574347..29574656)) /locus_tag="TCM_015780" /product="CheY-like two-component responsive regulator family protein isoform 1" /inference="similar to AA sequence:Phytozome:GSVIVT01013234001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc838t6; alternateUTRof:Thecc1EG015780t1" CDS complement(join(29568426..29568587,29568902..29568979, 29569144..29569212,29569346..29569609,29569916..29570056, 29570784..29571338,29571437..29571514,29571818..29571864, 29572038..29572104,29572472..29572551,29573380..29573509)) /locus_tag="TCM_015780" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="CheY-like two-component responsive regulator family protein isoform 1" /protein_id="EOY24079.1" /db_xref="Phytozome:GSVIVT01013234001" /db_xref="TAIR:AT4G18020.6" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2R7" /translation="MVCTANDLSAWKDFPKGLRVLLLDEDSNSAAEIRSKLEAMDYIV YTFCNENEALSAVSSRPESFHVAIVEVNTNNNNGSFKFLETAKDLPTIMTSNIHCIST MMKCIALGAVEFLRKPLSEDKLRNIWQHVVHKAFNAGGKDLSESLKPAKESVVSMLHL QMENGIPMNEDSDKTEDASLVYEIDRQPSPGSDKYPAPSTPQLKQGERLLDDGDCPEH TNCSTEKESGEQDGESKSVETTSGNAIAEVTAPVGQPQGSRETEVKEVADLVDGNKGE STVHSHPKNRVNRKDSQAGAEKPSTVSGLHSSCLNKANRKKLKVDWTPELHKQFVQAV DQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRRWPQRDQTQR SCYPHKPIMAFPPYHSNHVVPVGPLYPMWGAPPHPANIQMWGSPGYPPWQPAESWHWK PYPGFQADAWGCPVMPPPPGYCSAFTQNASGFHCSSTMDNRSGMPQNSVEHQPAEEVI DNVVKEAINKPWLPLPLGLKPPSTEGVLAELSRQGISAVPPHVNGSNS" CDS complement(join(29568426..29568587,29568902..29568979, 29569144..29569212,29569346..29569609,29569916..29570056, 29570784..29571338,29571437..29571514,29571818..29571864, 29572038..29572104,29572472..29572551,29573380..29573509)) /locus_tag="TCM_015780" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="CheY-like two-component responsive regulator family protein isoform 1" /protein_id="EOY24081.1" /db_xref="Phytozome:GSVIVT01013234001" /db_xref="TAIR:AT4G18020.6" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2R7" /translation="MVCTANDLSAWKDFPKGLRVLLLDEDSNSAAEIRSKLEAMDYIV YTFCNENEALSAVSSRPESFHVAIVEVNTNNNNGSFKFLETAKDLPTIMTSNIHCIST MMKCIALGAVEFLRKPLSEDKLRNIWQHVVHKAFNAGGKDLSESLKPAKESVVSMLHL QMENGIPMNEDSDKTEDASLVYEIDRQPSPGSDKYPAPSTPQLKQGERLLDDGDCPEH TNCSTEKESGEQDGESKSVETTSGNAIAEVTAPVGQPQGSRETEVKEVADLVDGNKGE STVHSHPKNRVNRKDSQAGAEKPSTVSGLHSSCLNKANRKKLKVDWTPELHKQFVQAV DQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRRWPQRDQTQR SCYPHKPIMAFPPYHSNHVVPVGPLYPMWGAPPHPANIQMWGSPGYPPWQPAESWHWK PYPGFQADAWGCPVMPPPPGYCSAFTQNASGFHCSSTMDNRSGMPQNSVEHQPAEEVI DNVVKEAINKPWLPLPLGLKPPSTEGVLAELSRQGISAVPPHVNGSNS" mRNA complement(join(29568539..29568979,29569144..29569212, 29569346..29569609,29569916..29570056,29570784..29571338, 29571437..29571514,29571818..29571864,29572038..29572104, 29572472..29572551,29573380..29573581,29574347..29574656)) /locus_tag="TCM_015780" /product="CheY-like two-component responsive regulator family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013234001" /inference="similar to AA sequence:Phytozome:GSVIVT01013234001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc913t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9061t2" CDS complement(join(29568878..29568979,29569144..29569212, 29569346..29569609,29569916..29570056,29570784..29571338, 29571437..29571514,29571818..29571864,29572038..29572104, 29572472..29572551,29573380..29573509)) /locus_tag="TCM_015780" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="CheY-like two-component responsive regulator family protein isoform 2" /protein_id="EOY24080.1" /db_xref="Phytozome:GSVIVT01013234001" /db_xref="TAIR:AT4G18020.6" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2R7" /translation="MVCTANDLSAWKDFPKGLRVLLLDEDSNSAAEIRSKLEAMDYIV YTFCNENEALSAVSSRPESFHVAIVEVNTNNNNGSFKFLETAKDLPTIMTSNIHCIST MMKCIALGAVEFLRKPLSEDKLRNIWQHVVHKAFNAGGKDLSESLKPAKESVVSMLHL QMENGIPMNEDSDKTEDASLVYEIDRQPSPGSDKYPAPSTPQLKQGERLLDDGDCPEH TNCSTEKESGEQDGESKSVETTSGNAIAEVTAPVGQPQGSRETEVKEVADLVDGNKGE STVHSHPKNRVNRKDSQAGAEKPSTVSGLHSSCLNKANRKKLKVDWTPELHKQFVQAV DQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRRWPQRDQTQR SCYPHKPIMAFPPYHSNHVVPVGPLYPMWGAPPHPANIQMWGSPGYPPWQPAESWHWK PYPGFQADAWGCPVMPPPPGYCSAFTQNASGFHCSSTMDNRSGMPQNSVEHQPVIHPI IA" mobile_element complement(29576546..29576626) /note="source:CACAO_Mutator_E39_scaffold_1 5868 5945" /mobile_element_type="transposon:TIR/Mutator" mobile_element 29576547..29576597 /note="source:CACAO_M_E34420_F305_scaffold_5 1467 1516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29576598..29576614 /note="source:scaffold_3_CACTA_0384 769 838" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29576615..29576638) /note="source:INTACT676_F297_scaffold_3-int 1188 1278" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29580077..29589360) /locus_tag="TCM_015782" /note="dbxref CacaoGD:Thecc1EG015782" mRNA complement(join(29580077..29580445,29583987..29584252, 29584733..29584810,29585429..29585815,29586077..29586359, 29586554..29586764,29587450..29588122,29588872..29589360)) /locus_tag="TCM_015782" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013952t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08590.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05609t00001" CDS complement(join(29584015..29584252,29584733..29584810, 29585429..29585815,29586077..29586359,29586554..29586764, 29587450..29588091)) /locus_tag="TCM_015782" /note="paralog of Thecc1EG013952t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /protein_id="EOY24082.1" /db_xref="Phytozome:POPTR_0003s08590.1" /db_xref="TAIR:AT4G18030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2E983" /translation="MASKHNTSGNRTRSPLSIFAVIGLCCFFYILGAWQRSGFGKGDS IALEVTKQTDCNIFTNLNFETHHNDVEIVEHSKPKAVVFKPCDLKYTDYTPCQEQDHA MKFPRDNMIYRERHCPAEEEKLHCLIPAPKGYMTPFEWPKSRDYVHYANVPHKSLTVE KAVQNWVQFKGNVFKFPGGGTMFPQGADAYIDELASVIPIADGSVRTALDTGCGVASW GAYMMKRNVLAMSFAPRDNHEAQVQFALERGVPAVIGVLGSIKLPYPSRAFDMAQCSR CLIPWTANDGMYLMEVDRVLRPGGYWVLSGPPINWKTYYKTWKRSKEDLKAEQRKIEE LAERLCWEKKYEKGDIAIFQKKVNDKSCLRKSANICESRDADDVWYKKMETCVNPFPK VSSSSEVAGGELKKYPARLFAVPPRIAKGLVDGVSAESYQEDNKLWKKHVNAYKRINK LIGTARYRNMMDMNAGLGGFAASLESPKSWVMNVVPTVAKNTLGVIYERGLIGIYHDW CEGFSTYPRTYDFIHANGVFSLYQNKCNFEDILLEMDRILRPEGAVIFRDDVDVLNKV RKIAGGMRWNTKMMDHEDGPLVPEKILVAVKQYWVGSSGNSTSNDQ" mobile_element 29584751..29584814 /note="source:CACAO_Mariner_E25_scaffold_1 4404 4467" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(29589927..29593562) /locus_tag="TCM_015783" /note="dbxref CacaoGD:Thecc1EG015783" mRNA complement(join(29589927..29590405,29590530..29590643, 29590866..29590923,29591124..29591261,29591799..29591879, 29591965..29592079,29592155..29592300,29592414..29592485, 29592600..29592727,29593151..29593562)) /locus_tag="TCM_015783" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02940.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02940.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9073t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9073t4" mRNA complement(join(29589927..29590405,29590836..29590923, 29591124..29591261,29591799..29591879,29591965..29592079, 29592155..29592300,29592414..29592485,29592600..29592727, 29593151..29593562)) /locus_tag="TCM_015783" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02940.1" /inference="similar to AA sequence:ricco:29628.m000749" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9073t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9073t4" mRNA complement(join(29589927..29590405,29590530..29590643, 29590836..29590923,29591124..29591261,29591799..29591879, 29591965..29592079,29592155..29592300,29592414..29592485, 29592600..29592727,29593151..29593562)) /locus_tag="TCM_015783" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02940.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02940.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9073t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9073t4" CDS complement(join(29590383..29590405,29590530..29590643, 29590866..29590923,29591124..29591261,29591799..29591879, 29591965..29592079,29592155..29592300,29592414..29592485, 29592600..29592727,29593151..29593412)) /locus_tag="TCM_015783" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24084.1" /db_xref="Phytozome:POPTR_0001s02940.1" /db_xref="TAIR:AT5G46560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTY2" /translation="MSSSTPKKRPKPKHNSPSKSSTSKSSLNSILEPPQSLFPSKGEF FRLIAVLAIASSVALSCNFFATFFTSTSKPFCDSNLDSIDSLSDSCEPCPSNGECYEG KLECIHGYRRHGKLCVEDKDINETAKKFSKWLEVRLCEAYAQSLCYGTVTVWAREHDI WNDLDGHELMQNFGPDNATYLYAKRRVMETIVKLLETRINSHGIQEVKCPDSLAEYYK PFTCRIRQLISNHALIIVPVCAGLVGFAMLFWNVHQKRCLSARVEELYHQVCDMLEEK ALRSKSVNGGGESWVVASWLRDHLLFPRERKDPHLWKKVEELVQEDSRVDRYPKLVKV EGSLSSSRMRKKGEEVTLKSVGGINTNLNQSDHKVKAEPKALMF" CDS complement(join(29590383..29590405,29590836..29590923, 29591124..29591261,29591799..29591879,29591965..29592079, 29592155..29592300,29592414..29592485,29592600..29592727, 29593151..29593412)) /locus_tag="TCM_015783" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29628.m000749" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY24085.1" /db_xref="TAIR:AT5G46560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTY2" /translation="MSSSTPKKRPKPKHNSPSKSSTSKSSLNSILEPPQSLFPSKGEF FRLIAVLAIASSVALSCNFFATFFTSTSKPFCDSNLDSIDSLSDSCEPCPSNGECYEG KLECIHGYRRHGKLCVEDKDINETAKKFSKWLEVRLCEAYAQSLCYGTVTVWAREHDI WNDLDGHELMQNFGPDNATYLYAKRRVMETIVKLLETRINSHGIQEVKCPDSLAEYYK PFTCRIRQLISNHALIIVPVCAGLVGFAMLFWNVHQKRCLSARVEELYHQVCDMLEEK ALRSKSVNGGGESWVVASWLRDHLLFPRERKDPHLWKKVEELVQEDSRVDRYPKLVKG ESKVVWEWQEPKALMF" CDS complement(join(29590383..29590405,29590530..29590643, 29590836..29590923,29591124..29591261,29591799..29591879, 29591965..29592079,29592155..29592300,29592414..29592485, 29592600..29592727,29593151..29593412)) /locus_tag="TCM_015783" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24083.1" /db_xref="Phytozome:POPTR_0001s02940.1" /db_xref="TAIR:AT5G46560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTY2" /translation="MSSSTPKKRPKPKHNSPSKSSTSKSSLNSILEPPQSLFPSKGEF FRLIAVLAIASSVALSCNFFATFFTSTSKPFCDSNLDSIDSLSDSCEPCPSNGECYEG KLECIHGYRRHGKLCVEDKDINETAKKFSKWLEVRLCEAYAQSLCYGTVTVWAREHDI WNDLDGHELMQNFGPDNATYLYAKRRVMETIVKLLETRINSHGIQEVKCPDSLAEYYK PFTCRIRQLISNHALIIVPVCAGLVGFAMLFWNVHQKRCLSARVEELYHQVCDMLEEK ALRSKSVNGGGESWVVASWLRDHLLFPRERKDPHLWKKVEELVQEDSRVDRYPKLVKG ESKVVWEWQVEGSLSSSRMRKKGEEVTLKSVGGINTNLNQSDHKVKAEPKALMF" gene 29593890..29596481 /locus_tag="TCM_015785" /note="dbxref CacaoGD:Thecc1EG015785" mRNA join(29593890..29593949,29594360..29594488, 29595092..29595257,29595351..29595390,29595976..29596060, 29596175..29596394) /locus_tag="TCM_015785" /product="Vacuolar protein sorting 55 (VPS55) family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29628.m000750" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022695t1" /inference="similar to AA sequence:ricco:29628.m000750" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00268t00004" mRNA join(29594316..29594488,29595041..29595257, 29595351..29595390,29595976..29596060,29596175..29596481) /locus_tag="TCM_015785" /product="Vacuolar protein sorting 55 (VPS55) family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29628.m000750" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022695t1" /inference="similar to AA sequence:ricco:29628.m000750" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00864t00001; alternateUTRof:Thecc1EG015785t1; inference alignment:Newbler:10:TSA:cgbaP2_g00268t00004" CDS join(29595156..29595257,29595351..29595390, 29595976..29596060,29596175..29596367) /locus_tag="TCM_015785" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29628.m000750; paralog of Thecc1EG022695t1" /codon_start=1 /product="Vacuolar protein sorting 55 (VPS55) family protein isoform 1" /protein_id="EOY24086.1" /db_xref="TAIR:AT1G32410.5" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AST6" /translation="MMADLPGYLRNCLHTGKLALLAILVSGGIVLQILACALYNNWWP MLTVIMYVLLPMPVLFFASSDRSSLLSESDNGWVNATKFLTGASAVGSIAIPAILKHA GVIGWGALAMELSSYFIFVLAIMCYIRMDDNDDYSFL" CDS join(29595156..29595257,29595351..29595390, 29595976..29596060,29596175..29596367) /locus_tag="TCM_015785" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29628.m000750; paralog of Thecc1EG022695t1" /codon_start=1 /product="Vacuolar protein sorting 55 (VPS55) family protein isoform 1" /protein_id="EOY24087.1" /db_xref="TAIR:AT1G32410.5" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AST6" /translation="MMADLPGYLRNCLHTGKLALLAILVSGGIVLQILACALYNNWWP MLTVIMYVLLPMPVLFFASSDRSSLLSESDNGWVNATKFLTGASAVGSIAIPAILKHA GVIGWGALAMELSSYFIFVLAIMCYIRMDDNDDYSFL" gene 29597898..29598591 /locus_tag="TCM_015786" /note="dbxref CacaoGD:Thecc1EG015786" mRNA 29597898..29598591 /locus_tag="TCM_015786" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02960.1" /inference="similar to AA sequence:frave:gene10520" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc443t3" CDS 29598012..29598524 /locus_tag="TCM_015786" /note="dbxref frave:gene10520" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24088.1" /translation="MYFSLPKITIISEQRVYVKRSISLQSIFFTDLQSNFRCQKTMRN WGASDPLAGRISQRQGSSSSDTGQNPANVTLSAVAATDPNSNTVTLSGRGTTTAPCIP GTGFGVPLGFGMVWVSVFGLPLNQERRPMVGCASFPVIVEFFFLEEESWGFWKMEIGL LFGEWDWATM" mobile_element complement(29599183..29599397) /note="source:scaffold_2_CACTA_0245 1053 1320" /mobile_element_type="transposon:TIR/CACTA" gene complement(29600411..29601835) /locus_tag="TCM_015787" /note="dbxref CacaoGD:Thecc1EG015787" mRNA complement(29600411..29601835) /locus_tag="TCM_015787" /product="Duplicated homeodomain-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011241001" /inference="similar to AA sequence:ricco:29628.m000758" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc993t1" CDS complement(29600432..29601424) /locus_tag="TCM_015787" /note="dbxref ricco:29628.m000758" /codon_start=1 /product="Duplicated homeodomain-like superfamily protein, putative" /protein_id="EOY24089.1" /db_xref="TAIR:AT5G45420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASQ2" /translation="MEFLDEDTRPRFLFQSRPQASSSFHENTPQKPSKTLLFISLSIS SLLLSLSLISLHTEPFKSLLFWLSLSLFLGPFAPASLTGGDVRVGHGPIIPDPIDQEP QPEPESKKKFSQKRSKPDKIDELGGNRGSSVENAIGFSNLEVKSKNSNGFSSLGAKKE DLGSGFDGEEMEWSEADVEILKKQMVKNPVGKPGRWESIAEAFKGKHRMESVIKKAKE LGEKKAGDSDSYAQFLKNRKPLDTRIHGGNDGVTSESQESSGGGDNNAGAAGWSSGED IALLNALKAFPKDAPMRWEKIAAAVPGKSKAACMKRVAELKRDYRSSKASDEGN" gene complement(29603566..29604758) /locus_tag="TCM_015788" /note="dbxref CacaoGD:Thecc1EG015788" mRNA complement(join(29603566..29603841,29603975..29604758)) /locus_tag="TCM_015788" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006001001" /inference="similar to AA sequence:Phytozome:POPTR_0001s23920.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc584t4" CDS complement(join(29603832..29603841,29603975..29604564)) /locus_tag="TCM_015788" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /protein_id="EOY24090.1" /db_xref="Phytozome:POPTR_0001s23920.1" /db_xref="TAIR:AT2G18370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AX88" /translation="MQECNNRFDGFLILALFRGGLHKLTWRGFFGLFQIKIQSITPNL GVRNKKITVLSFFWVKIFSLFSYKKRARTSTDYLKEMASRIRTPALAAVCLLLLLAAA PASDAAISCSDVIKDLRPCVNYLVNGTGKPPSACCAGASALASAASSSSDKKAACECI KSAAKNMKPNAQLAQALPANCGINLPVTIAPNVDCSKVG" mobile_element 29605391..29605499 /note="source:scaffold_8_CACTA_0858 14643 14748" /mobile_element_type="transposon:TIR/CACTA" gene 29606005..29609150 /locus_tag="TCM_015789" /note="dbxref CacaoGD:Thecc1EG015789" mRNA 29606005..29609150 /locus_tag="TCM_015789" /product="Pentatricopeptide (PPR) repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08560.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08560.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9084t2" CDS 29606111..29608315 /locus_tag="TCM_015789" /codon_start=1 /product="Pentatricopeptide (PPR) repeat-containing protein, putative" /protein_id="EOY24091.1" /db_xref="Phytozome:POPTR_0003s08560.1" /db_xref="TAIR:AT1G32415.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P0C7R0" /translation="MRSRSLLPLLPYYPLYVRSFSQTIFSNTHYSKLTFNDSQLFYFL SNHRFQEVRNLLDKMPQRSNHARVVHLTSLLSKFSRDGFINEAKALFDIMPERNIVSY NAMLSGFVQCGRISEARRFFGEMPERNVVSWTSMLCGLLESGRVCEGKKFFYDMPEKN VVSWNSLIGGLIRNGDLEEARLVFDAMPVRNIISWNTMIAGYAENCRMKEARILFEEM EDRNVVTWTSMIAGYCRAGEVNEGYCLFCRMPERNIVSWTAMIGGFTWNGFYGEALLL FLEMKGNYEIRPNSETFVSLAYSCAGMGFPFLGKQLHAQVIVDGWEYDDYDGRLSRGL IHMYSVFGIMNFAFYIFKKNLNNSAVQSCNSMINGYIHIGQLEEAQYVFDISPIRDKI SWTSMIDGYLSIGQVSKACYLFNNMPERDAVAWTAMISGYVQNELFVESISLFLGMRA QGVFPLNATYSILFGAAGATANLDQGRQFHCMLIKTQYEFDLILENSLISMYAKCGVI DDAYNIFSTMVSRDLVSWNSMIMGFSHHGLANEALKIFEAILESGIHPNSVTFLGILS ACCHVGLISKALELFNSMRHIYGIQPGLEHYVSVINLLGRAGRIREAEEFVLRLPSEP DRAIWGALLGVCGFSETGVEIAKHAAQKLLELDPLNAPAHVVLCNIYAARGLYLAEQK LRKEMGLRGVRKVPGCSWIQLNGRVYMFKSGDKLHPQADEVLSLLFGISDKS" gene 29609805..29614457 /locus_tag="TCM_015790" /note="dbxref CacaoGD:Thecc1EG015790" mRNA join(29609805..29611174,29611280..29612201, 29612293..29612399,29614292..29614457) /locus_tag="TCM_015790" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08540.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08540.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc111t8" CDS join(29610122..29611174,29611280..29611996) /locus_tag="TCM_015790" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY24092.1" /db_xref="Phytozome:POPTR_0003s08540.1" /db_xref="TAIR:AT3G29230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2S4" /translation="MTGRFNLSKPASTGLSSLTIDKFLKAQKNLSKPQPKLWPNDHQL QIPSSQDNQQQRPVILRRTRPILRAFESCTCFNQFNQNHTQLLKSDLLQHPPVVTWVL KKLCNSLKSVSHAVLVFDCIKEPDTLICNIVLKGFLDFDDPFGALSFYYEKMVGKLVE YNEYTLPLLLKIYAEIRSLKEGEKVHAQVLKLGLESNLCVKNSLICMYSFCGQIGIAH EVFDDGFVLDLVTWNSMIDGYVKNEQVGVARELFNEMPKRDHFSWNSIFAGYVGVGEM EVARELFEKMPFRALVSWNCMIDGYARIENISEARKLFDQMPVRDVVSWNIMLALYVR CKKYASQTLMLFDRMIEIKCHSLLSTTLLTMYAKCGATDLARDVFDKMPDKNVVSWTS MITGYGMHGHVEKALEMFIDMERRGQMPDTATFLSCLSACKNAGKVFEGWWCLDIMCR VYKIEPEVEHFGCMFHLLSWVGLVKHSKGLKGKMPVQAGASLWGALLSACRTYSKLEL GEIIAKRLIELEPMDVALYVLLSYIYSVKEKWGEVEITRNFIKDRELSETSALPHQRT MIYSMLMELGVQLKLSCGGSFGV" gene complement(29612860..29616909) /locus_tag="TCM_015791" /note="dbxref CacaoGD:Thecc1EG015791" mRNA complement(join(29612860..29613303,29613454..29613586, 29613750..29613931,29614077..29614183,29614271..29614482, 29616698..29616909)) /locus_tag="TCM_015791" /product="Expansin-like B1" /inference="alignment:exonerate- protein:2:ricco:29628.m000766" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015863t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08530.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9109t2" CDS complement(join(29613100..29613303,29613454..29613586, 29613750..29613931,29614077..29614183,29614271..29614463)) /locus_tag="TCM_015791" /note="paralog of Thecc1EG015863t1" /codon_start=1 /product="Expansin-like B1" /protein_id="EOY24093.1" /db_xref="Phytozome:POPTR_0003s08530.1" /db_xref="TAIR:AT4G17030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q850K7" /translation="MPLSSLISLSLLIESSMALSLQYLLILFAALLLTQSLAEAATCS NYFTHSRAAYYPNSDEHGTDVGACGFGSFGATINGGDVSTASELYRNGVGCGACYQVR CTNSNYCSDDGVTVVITDQGSGPNTDFILSRRAFGRMAQTTDAAASLLAQGVVDIEYR RVSCSYPNKNITIKIDENSNYPHYLAFVLWYQQGDKDITAVQLCETKNFVCKLLDRSY GAVWTTTSPPTGPLSLRMLLSGEDGDESWFVPINNIPENWKGGETYDTGVQINI" gene 29614502..29616900 /locus_tag="TCM_015792" /note="dbxref CacaoGD:Thecc1EG015792" mRNA join(29614502..29614525,29616011..29616900) /locus_tag="TCM_015792" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2440t1" CDS 29616040..29616303 /locus_tag="TCM_015792" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24094.1" /translation="MMYCCPQNHLLCFTFTFLFFLYFPLTIGCCKLIARKQNFLASWK EKYPVGFSDRYFHLTGRNVTCFVQRRDQRWLRLIQKKLIPTRY" mobile_element complement(29617330..29617498) /note="source:scaffold_9_CACTA_0942 16895 17071" /mobile_element_type="transposon:TIR/CACTA" gene 29618515..29620984 /locus_tag="TCM_015793" /note="dbxref CacaoGD:Thecc1EG015793" mRNA join(29618515..29619050,29619844..29619958, 29620131..29620282,29620374..29620635,29620739..29620984) /locus_tag="TCM_015793" /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03020.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03020.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12685t00001" CDS join(29619022..29619050,29619844..29619958, 29620131..29620282,29620374..29620635,29620739..29620930) /locus_tag="TCM_015793" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein" /protein_id="EOY24095.1" /db_xref="Phytozome:POPTR_0001s03020.1" /db_xref="TAIR:AT2G38740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTX7" /translation="MTTGENSVQSKKSIPDLAPLEAVLFDVDGTLCDSDPLHHYAFRE MLQEIGFNNGVPIDEEFFVENIAGKHNHDIAMRLFPDDIPRGAKFLEDKEAMFRRLAS ENLPPIKGLYKLTKWIEERGLKRAAVTNAPKQNAEMIISKLGLKDFFDVVILGSDCER AKPYPDPYLKALEVLKVSKDHTFVCEDSVSGIKAGVAAGMPVVGLATRNPENLLMEAD PTFLVKDYEDPKLWAALEELDKKGGSLKTAA" gene complement(29620737..29625850) /locus_tag="TCM_015794" /note="dbxref CacaoGD:Thecc1EG015794" mRNA complement(join(29620737..29621537,29621741..29622109, 29622201..29622251,29622507..29622732,29622856..29622926, 29623019..29623138,29623218..29623412,29623600..29623664, 29623780..29623870,29624133..29624194,29624278..29624328, 29624462..29624563,29624844..29624951,29625322..29625385, 29625469..29625704)) /locus_tag="TCM_015794" /product="DYNAMIN-like 1E isoform 1" /inference="alignment:exonerate- protein:2:ricco:29709.m001211" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046942t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013218001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc9t1; alternateUTRof:Thecc1EG015794t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6t15" mRNA complement(join(29621028..29621537,29621741..29622109, 29622201..29622251,29622507..29622732,29622856..29622926, 29623019..29623138,29623218..29623412,29623600..29623664, 29623780..29623870,29624133..29624194,29624278..29624328, 29624462..29624563,29624844..29624951,29625322..29625385, 29625469..29625850)) /locus_tag="TCM_015794" /product="DYNAMIN-like 1E isoform 1" /inference="alignment:exonerate- protein:2:ricco:29709.m001211" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046942t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013218001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6t15" CDS complement(join(29621409..29621537,29621741..29622109, 29622201..29622251,29622507..29622732,29622856..29622926, 29623019..29623138,29623218..29623412,29623600..29623664, 29623780..29623870,29624133..29624194,29624278..29624328, 29624462..29624563,29624844..29624951,29625322..29625385, 29625469..29625606)) /locus_tag="TCM_015794" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046942t1" /codon_start=1 /product="DYNAMIN-like 1E isoform 1" /protein_id="EOY24096.1" /db_xref="Phytozome:GSVIVT01013218001" /db_xref="TAIR:AT3G60190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNX5" /translation="MATMESLIVTVNRIQRACTVLGDHGGDSALPTLWEALPSVVVVG GQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEQGVQEYGEFLHLPKKKFTD FAMVRKEIQDETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPES IVNDIESMVRSYVEKPNCIILAITPANQDIATSDAMKLSREVDPTGERTFGVLTKLDL MDKGTNAVDVLEGRAYPLQHPWVGIVNRSQADINKNVDMIAARRREREFFATSPDYGH LASKMGSEYLAKLLSKHLESVIRARLPGITSLINKSIDELEAELSHLGRPVAVDAGAQ LYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDHQLPAALRKLPFDRHLSLQNIRKV VSEADGYQPHLIAPEQGYRRLIDGALNYFRGPAEASVDAVHFLLKELVRRSIAETQEL KRFPTLQAEIAGAANEALERFREDSKKTTLRLVDMESSYLTVDFFRKLPQEVEKSGNP TSLSADRYAEGHFRRIGSNVSSYVGMVSDTLRNTIPKAVVYCQVREAKQSLLDHFYTQ VGKKEGKQLAQLLDEDPALMERRQQCAKRLELYKSARDEIDSVSWAR" CDS complement(join(29621409..29621537,29621741..29622109, 29622201..29622251,29622507..29622732,29622856..29622926, 29623019..29623138,29623218..29623412,29623600..29623664, 29623780..29623870,29624133..29624194,29624278..29624328, 29624462..29624563,29624844..29624951,29625322..29625385, 29625469..29625606)) /locus_tag="TCM_015794" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046942t1" /codon_start=1 /product="DYNAMIN-like 1E isoform 1" /protein_id="EOY24097.1" /db_xref="Phytozome:GSVIVT01013218001" /db_xref="TAIR:AT3G60190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNX5" /translation="MATMESLIVTVNRIQRACTVLGDHGGDSALPTLWEALPSVVVVG GQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEQGVQEYGEFLHLPKKKFTD FAMVRKEIQDETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPES IVNDIESMVRSYVEKPNCIILAITPANQDIATSDAMKLSREVDPTGERTFGVLTKLDL MDKGTNAVDVLEGRAYPLQHPWVGIVNRSQADINKNVDMIAARRREREFFATSPDYGH LASKMGSEYLAKLLSKHLESVIRARLPGITSLINKSIDELEAELSHLGRPVAVDAGAQ LYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDHQLPAALRKLPFDRHLSLQNIRKV VSEADGYQPHLIAPEQGYRRLIDGALNYFRGPAEASVDAVHFLLKELVRRSIAETQEL KRFPTLQAEIAGAANEALERFREDSKKTTLRLVDMESSYLTVDFFRKLPQEVEKSGNP TSLSADRYAEGHFRRIGSNVSSYVGMVSDTLRNTIPKAVVYCQVREAKQSLLDHFYTQ VGKKEGKQLAQLLDEDPALMERRQQCAKRLELYKSARDEIDSVSWAR" mRNA complement(join(29622226..29622273,29622507..29622732, 29622856..29622926,29623019..29623138,29623218..29623412, 29623600..29623664,29623780..29623870,29624133..29624194, 29624278..29624328,29624462..29624563,29624844..29624951, 29625322..29625385,29625469..29625704)) /locus_tag="TCM_015794" /product="DYNAMIN-like 1E isoform 3" /inference="alignment:exonerate- protein:2:ricco:29709.m001211" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046942t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013218001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc9t4; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6t15" CDS complement(join(29622271..29622273,29622507..29622732, 29622856..29622926,29623019..29623138,29623218..29623412, 29623600..29623664,29623780..29623870,29624133..29624194, 29624278..29624328,29624462..29624563,29624844..29624951, 29625322..29625385,29625469..29625606)) /locus_tag="TCM_015794" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG046942t1" /codon_start=1 /product="DYNAMIN-like 1E isoform 3" /protein_id="EOY24098.1" /db_xref="Phytozome:GSVIVT01013218001" /db_xref="TAIR:AT3G60190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNX5" /translation="MATMESLIVTVNRIQRACTVLGDHGGDSALPTLWEALPSVVVVG GQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEQGVQEYGEFLHLPKKKFTD FAMVRKEIQDETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPES IVNDIESMVRSYVEKPNCIILAITPANQDIATSDAMKLSREVDPTGERTFGVLTKLDL MDKGTNAVDVLEGRAYPLQHPWVGIVNRSQADINKNVDMIAARRREREFFATSPDYGH LASKMGSEYLAKLLSKHLESVIRARLPGITSLINKSIDELEAELSHLGRPVAVDAGAQ LYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDHQLPAALRKLPFDRHLSLQNIRKV VSEADGYQPHLIAPEQGYRRLIDGALNYFRGPAEASVDA" gene complement(29626474..29628772) /locus_tag="TCM_015795" /note="dbxref CacaoGD:Thecc1EG015795" mRNA complement(join(29626474..29627919,29628688..29628772)) /locus_tag="TCM_015795" /product="Drug/metabolite transporter superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005801t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03050.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6087t1" CDS complement(29626754..29627782) /locus_tag="TCM_015795" /note="paralog of Thecc1EG005801t1" /codon_start=1 /product="Drug/metabolite transporter superfamily protein" /protein_id="EOY24099.1" /db_xref="Phytozome:POPTR_0001s03050.1" /db_xref="TAIR:AT4G18220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTX4" /translation="MIYIFFLLAGQSTATLLGRLYYDKGGNSKWMATFVQSAGFPILL PLLFFFSPPTKSITSSNPIASSITRQPKTSTLVFLYVALGLLLTGDNMMYSYGLLYLP VSTYSLLCATQLAFNAVFSFFLNSQKFTPLILNSLILLTISAALLAVNADSENTSTVS KGKYAIGFLCTVGASATYSLYLSLVQLSFQKVIKRETFSTVLDMQIYPSFVATCGCIV GLFASGEWKSLSKEMKEYQEGQVPYLMTLIWTAVTWQISSIGLLGLVFEVSSLFSNVI STVALPVVPILAVIFFHDKMDGVKVVAMLLAIWGFLSYIYQHYLDDSETKVKKANSNE VSVALTEV" gene 29633385..29636161 /locus_tag="TCM_015796" /note="dbxref CacaoGD:Thecc1EG015796" mRNA 29633385..29636105 /locus_tag="TCM_015796" /product="Intron maturase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024930t1" /inference="similar to AA sequence:ricco:29628.m000772" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09117t00001" mRNA join(29633396..29633492,29633612..29635939) /locus_tag="TCM_015796" /product="Intron maturase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024930t1" /inference="similar to AA sequence:ricco:29628.m000772" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9117t1; alternateUTRof:Thecc1EG015796t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9117t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1003t2" mRNA join(29633402..29633492,29633592..29635939) /locus_tag="TCM_015796" /product="Intron maturase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024930t1" /inference="similar to AA sequence:ricco:29628.m000772" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9117t2; alternateUTRof:Thecc1EG015796t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9117t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1003t2" mRNA join(29633465..29635809,29636132..29636161) /locus_tag="TCM_015796" /product="Intron maturase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024930t1" /inference="similar to AA sequence:ricco:29628.m000772" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1219t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1003t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9117t1" CDS join(29633612..29635809,29636132..29636135) /locus_tag="TCM_015796" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29628.m000772; paralog of Thecc1EG024930t1" /codon_start=1 /product="Intron maturase isoform 4" /protein_id="EOY24103.1" /db_xref="TAIR:AT5G46920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJY9" /translation="MHRGVTIFTHQVLKNPNIVPFKSTCFYSQSNSFTRRANGFALFR LFSFTPLHRRVPDPDDPANLMKEDGVSVCSQMWIENFREPDRIITNLASYLRRFELWV LAYQKVCADEIGSYMPRSSITRSALDDLLALRNAVLDNRFKWGARLEFFIKSPKDKTD YESLSKRKIKAILTTTQPAPFQDKLVQEVLFMILEPIYEARFSQKSFAFRPGRNAHTV LRVIRRSFAGYLWYIKGDLSAILDGLKVGLVISALMRDVRDKKVIDLIKSALVTPVIT SPLDGGEKKKKKKRKYQKKRVLAEDEPKPDPYWLETFFGFAPEEAEKLPSWGHCGILS PLLANICLDELDRWMEGKIKEFYRPSKSDVIWNSPEGEAEQGNTSWPEFVPTSGPDKT RKMDYIRHGGHILIGIRGPRADAATLRKQLIEFCDLKYMIKLDNESLPIEHITKGIMF LDHVLCRRVVYPTLRYTATGGKIISEKGVGTLLSVTASLKQCIKQFRKLNFLKGDREP DPQPCFRMFHATQAHTNAQMNKFLSTMVEWYRYADNRKKAVNFCSYIIRGSLAKLYAA KYKLRSRAKVYKIGARNLSRPLKERKGQSPEYQNLLRMGLVESIDGLQYTRMSLIPET DYTPFPSNWRPDHEKALVEYIRLDDPKTLKEQRSCIGEQGLVSPQDYISMLVWNYKRN AIVMDQLYLVKTAGSHTEGDDQLLLSSNHENYDPKSNEEEETEEGFHASQI" CDS 29633612..29635813 /locus_tag="TCM_015796" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29628.m000772; paralog of Thecc1EG024930t1" /codon_start=1 /product="Intron maturase isoform 1" /protein_id="EOY24100.1" /db_xref="TAIR:AT5G46920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJY9" /translation="MHRGVTIFTHQVLKNPNIVPFKSTCFYSQSNSFTRRANGFALFR LFSFTPLHRRVPDPDDPANLMKEDGVSVCSQMWIENFREPDRIITNLASYLRRFELWV LAYQKVCADEIGSYMPRSSITRSALDDLLALRNAVLDNRFKWGARLEFFIKSPKDKTD YESLSKRKIKAILTTTQPAPFQDKLVQEVLFMILEPIYEARFSQKSFAFRPGRNAHTV LRVIRRSFAGYLWYIKGDLSAILDGLKVGLVISALMRDVRDKKVIDLIKSALVTPVIT SPLDGGEKKKKKKRKYQKKRVLAEDEPKPDPYWLETFFGFAPEEAEKLPSWGHCGILS PLLANICLDELDRWMEGKIKEFYRPSKSDVIWNSPEGEAEQGNTSWPEFVPTSGPDKT RKMDYIRHGGHILIGIRGPRADAATLRKQLIEFCDLKYMIKLDNESLPIEHITKGIMF LDHVLCRRVVYPTLRYTATGGKIISEKGVGTLLSVTASLKQCIKQFRKLNFLKGDREP DPQPCFRMFHATQAHTNAQMNKFLSTMVEWYRYADNRKKAVNFCSYIIRGSLAKLYAA KYKLRSRAKVYKIGARNLSRPLKERKGQSPEYQNLLRMGLVESIDGLQYTRMSLIPET DYTPFPSNWRPDHEKALVEYIRLDDPKTLKEQRSCIGEQGLVSPQDYISMLVWNYKRN AIVMDQLYLVKTAGSHTEGDDQLLLSSNHENYDPKSNEEEETEEGFHASQM" CDS 29633612..29635813 /locus_tag="TCM_015796" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29628.m000772; paralog of Thecc1EG024930t1" /codon_start=1 /product="Intron maturase isoform 1" /protein_id="EOY24101.1" /db_xref="TAIR:AT5G46920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJY9" /translation="MHRGVTIFTHQVLKNPNIVPFKSTCFYSQSNSFTRRANGFALFR LFSFTPLHRRVPDPDDPANLMKEDGVSVCSQMWIENFREPDRIITNLASYLRRFELWV LAYQKVCADEIGSYMPRSSITRSALDDLLALRNAVLDNRFKWGARLEFFIKSPKDKTD YESLSKRKIKAILTTTQPAPFQDKLVQEVLFMILEPIYEARFSQKSFAFRPGRNAHTV LRVIRRSFAGYLWYIKGDLSAILDGLKVGLVISALMRDVRDKKVIDLIKSALVTPVIT SPLDGGEKKKKKKRKYQKKRVLAEDEPKPDPYWLETFFGFAPEEAEKLPSWGHCGILS PLLANICLDELDRWMEGKIKEFYRPSKSDVIWNSPEGEAEQGNTSWPEFVPTSGPDKT RKMDYIRHGGHILIGIRGPRADAATLRKQLIEFCDLKYMIKLDNESLPIEHITKGIMF LDHVLCRRVVYPTLRYTATGGKIISEKGVGTLLSVTASLKQCIKQFRKLNFLKGDREP DPQPCFRMFHATQAHTNAQMNKFLSTMVEWYRYADNRKKAVNFCSYIIRGSLAKLYAA KYKLRSRAKVYKIGARNLSRPLKERKGQSPEYQNLLRMGLVESIDGLQYTRMSLIPET DYTPFPSNWRPDHEKALVEYIRLDDPKTLKEQRSCIGEQGLVSPQDYISMLVWNYKRN AIVMDQLYLVKTAGSHTEGDDQLLLSSNHENYDPKSNEEEETEEGFHASQM" CDS 29633612..29635813 /locus_tag="TCM_015796" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29628.m000772; paralog of Thecc1EG024930t1" /codon_start=1 /product="Intron maturase isoform 1" /protein_id="EOY24102.1" /db_xref="TAIR:AT5G46920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJY9" /translation="MHRGVTIFTHQVLKNPNIVPFKSTCFYSQSNSFTRRANGFALFR LFSFTPLHRRVPDPDDPANLMKEDGVSVCSQMWIENFREPDRIITNLASYLRRFELWV LAYQKVCADEIGSYMPRSSITRSALDDLLALRNAVLDNRFKWGARLEFFIKSPKDKTD YESLSKRKIKAILTTTQPAPFQDKLVQEVLFMILEPIYEARFSQKSFAFRPGRNAHTV LRVIRRSFAGYLWYIKGDLSAILDGLKVGLVISALMRDVRDKKVIDLIKSALVTPVIT SPLDGGEKKKKKKRKYQKKRVLAEDEPKPDPYWLETFFGFAPEEAEKLPSWGHCGILS PLLANICLDELDRWMEGKIKEFYRPSKSDVIWNSPEGEAEQGNTSWPEFVPTSGPDKT RKMDYIRHGGHILIGIRGPRADAATLRKQLIEFCDLKYMIKLDNESLPIEHITKGIMF LDHVLCRRVVYPTLRYTATGGKIISEKGVGTLLSVTASLKQCIKQFRKLNFLKGDREP DPQPCFRMFHATQAHTNAQMNKFLSTMVEWYRYADNRKKAVNFCSYIIRGSLAKLYAA KYKLRSRAKVYKIGARNLSRPLKERKGQSPEYQNLLRMGLVESIDGLQYTRMSLIPET DYTPFPSNWRPDHEKALVEYIRLDDPKTLKEQRSCIGEQGLVSPQDYISMLVWNYKRN AIVMDQLYLVKTAGSHTEGDDQLLLSSNHENYDPKSNEEEETEEGFHASQM" gene complement(29636246..29638713) /locus_tag="TCM_015797" /note="dbxref CacaoGD:Thecc1EG015797" mRNA complement(join(29636246..29636993,29638590..29638713)) /locus_tag="TCM_015797" /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29628.m000775" /inference="similar to AA sequence:Phytozome:POPTR_0003s08480.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9119t3" CDS complement(29636361..29636954) /locus_tag="TCM_015797" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /protein_id="EOY24104.1" /db_xref="Phytozome:POPTR_0003s08480.1" /db_xref="TAIR:AT5G38610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2T0" /translation="MQHVSFSSFCFFFFFFLFFFIFLLTPNDEVSATSTLSVDIINKT CKTCSDRSSVVNYTFCSASLQEIPVSHVTNLQGLAIVAMELALQNATNTLSIIKELVN NETLGPSSLACLSDCSLLYSDGVVTLVDTVGAFLTGQYGNADAWVSAVMQGTATCEEG FQDMELVSPLTKENYSLFQLCDVLLCIMNLLDSDVKS" gene complement(29638760..29642793) /locus_tag="TCM_015798" /note="dbxref CacaoGD:Thecc1EG015798" mRNA complement(join(29638760..29639629,29642422..29642470, 29642607..29642793)) /locus_tag="TCM_015798" /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29628.m000775" /inference="similar to AA sequence:Phytozome:POPTR_0003s08470.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14429t00001" CDS complement(join(29638991..29639629,29642422..29642470, 29642607..29642680)) /locus_tag="TCM_015798" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /protein_id="EOY24105.1" /db_xref="Phytozome:POPTR_0003s08470.1" /db_xref="TAIR:AT5G46940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2T1" /translation="MDLAGDFLVCYFVRRWWGGGLRARSIRLFKLLCLAFFYFSNFPL ISNESLSINKIPCNFFLYKSHFKLSFSSKMENSFPSVCTFIAFFFLLLVSASSDVIQD SCDKAAKGDRNINFDFCVASLEGNPKSKTATSTESLVPISIEMAISNATSISSIISKL LKNKNLDNPTRSCLEDCSELYSDAQPNLEIGGQAVESKDYGTAKTVISAALDAPVTCE DGFKEREGLVSPLTKENDEFFQLTVVPLAFINLLN" mobile_element 29640592..29640646 /note="source:CACAO_Mariner_E180_scaffold_6 4042 4096" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 29641494..29641580 /note="source:CACAO_M_E34351_F2_scaffold_4 3313 3398" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29641619..29642413 /note="source:CACAO_M_S_E144670_F2_scaffold_10 1 794" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29644609..29657703 /locus_tag="TCM_015799" /note="dbxref CacaoGD:Thecc1EG015799" mRNA join(29644609..29645153,29646619..29646870, 29646941..29647111,29647227..29647277,29647407..29647499, 29647611..29647706,29647845..29647895,29647982..29648100, 29648388..29648496,29648574..29648696,29648770..29648841, 29649566..29649637,29649723..29649789,29650033..29650175, 29650256..29650327,29650449..29650577,29651323..29651478, 29651700..29651813,29651882..29651980,29652074..29652151, 29652469..29652603,29652735..29652809,29652961..29653078, 29653280..29653647,29653748..29653810,29653914..29653985, 29654398..29654529,29654609..29654728,29655029..29657703) /locus_tag="TCM_015799" /product="Regulator of nonsense transcripts 1" /inference="alignment:exonerate-protein:2:frave:gene10631" /inference="similar to AA sequence:Phytozome:GSVIVT01013247001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9520t5" CDS join(29644638..29645153,29646619..29646870, 29646941..29647111,29647227..29647277,29647407..29647499, 29647611..29647706,29647845..29647895,29647982..29648100, 29648388..29648496,29648574..29648696,29648770..29648841, 29649566..29649637,29649723..29649789,29650033..29650175, 29650256..29650327,29650449..29650577,29651323..29651478, 29651700..29651813,29651882..29651980,29652074..29652151, 29652469..29652603,29652735..29652809,29652961..29653078, 29653280..29653647,29653748..29653810,29653914..29653985, 29654398..29654529,29654609..29654728,29655029..29655163) /locus_tag="TCM_015799" /codon_start=1 /product="Regulator of nonsense transcripts 1" /protein_id="EOY24106.1" /db_xref="Phytozome:GSVIVT01013247001" /db_xref="TAIR:AT5G47010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9VYS3" /translation="MDSQFETASQPDPATDAYTFLEFNTQGESDFEYTDFRDTIRSWP TPSDTTAADRSGSDHQSDTAASSSPSSASKGAGRGATSNNNSNSNSISNSGAVVDALA TGISGLNFEETVGDEDGGYEYGKGDFAEHACRYCGVSNPACVVRCNVPSCRKWFCNSR GNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVV LLCREPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINK VEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKE SQSKDNVTVRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQAVGH VIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSG YIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTG KTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSP VEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSAD VICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPV IMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTI NERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV VPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVR SNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEG PLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDNIGSAASSSPNADRRSSRARGT YMPPGPPNGTHKPGVHPTGFPMPRVPLPPFPGSPSQPYAIPTRGAVHGPVGAVPQVPQ PGSRGFGAGRGNAGAPIGSHLPHQQGTQQNVGTIGSTFNFPLENPNSQPSVGGPLSQP GFVNNMPVQGPSQTFRDGFSMGGMSQDFLGDDFKSQGSHVPYNVADFSTQASQSAYAV DYVTQGAQGGFPGNFLNQNSQAGYSRFGTGNDFMSQDYMNHGSQGLFTQVGFNDPSQD DASQSHFGVANPNQLQSQGLMNSLYSQPFAHYNTQPLNLQAPQQQQPQQGQGSQNQKL HYNG" gene complement(29655386..29656660) /locus_tag="TCM_015801" /note="dbxref CacaoGD:Thecc1EG015801" mRNA complement(29655386..29656660) /locus_tag="TCM_015801" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03120.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03120.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9518t2" CDS complement(29655938..29656627) /locus_tag="TCM_015801" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative" /protein_id="EOY24107.1" /db_xref="Phytozome:POPTR_0001s03120.1" /translation="MGVREIQVAAHNLNHSLIVHELDDVCDSVTGRPLTGSWLWDSAL VLSHWMPTHLNFHGKAVIELGAGAGLPGLTAALLGATRVLLTDVQPLLAGLLKNVEAN GFEGRVDVRELVWGSDESISGLTESSTFDVVLMSDVFYDPEEMVGLSRTLKRICEEGT EIWAASELRPWTGECLNELRDQGFQVVEIVTSQLGVQEGVEDCNEFAIFQIVPPLAEN CNVSTTPVREF" gene complement(29656757..29667640) /locus_tag="TCM_015802" /note="dbxref CacaoGD:Thecc1EG015802" mRNA complement(join(29656757..29657676,29657906..29658001, 29658089..29658157,29658752..29658814,29659167..29659244, 29659641..29659734,29659815..29659948,29660025..29660102, 29660536..29660601,29660705..29660812,29661193..29661270, 29661524..29661583,29661677..29661781,29662388..29662429, 29662535..29662717,29663411..29663474,29664191..29664332, 29664446..29664606,29664930..29665054,29665869..29665939, 29666148..29666298,29666539..29666595,29666774..29666868, 29667031..29667106,29667343..29667640)) /locus_tag="TCM_015802" /product="Membrane trafficking VPS53 family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene24274" /inference="similar to AA sequence:Phytozome:GSVIVT01016094001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc592t3" mRNA complement(join(29656939..29657676,29657906..29658001, 29658089..29658157,29658752..29658814,29659167..29659244, 29659641..29659670,29660539..29660601,29660705..29660812, 29661193..29661270,29661524..29661583,29661677..29661781, 29662388..29662429,29662535..29662717,29663411..29663474, 29664191..29664332,29664446..29664606,29664930..29665054, 29665869..29665939,29666148..29666298,29666539..29666595, 29666774..29666868,29667031..29667106,29667410..29667543)) /locus_tag="TCM_015802" /product="Membrane trafficking VPS53 family protein isoform 7" /inference="alignment:exonerate-protein:2:frave:gene24274" /inference="similar to AA sequence:Phytozome:GSVIVT01016094001" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc571t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc592t3" mRNA complement(join(29656939..29657676,29657906..29658001, 29658089..29658160,29659819..29659948,29660025..29660102, 29660536..29660601,29660705..29660812,29661193..29661270, 29661524..29661583,29661677..29661781,29662388..29662429, 29662535..29662717,29663411..29663474,29664191..29664332, 29664446..29664606,29664930..29665054,29665869..29665939, 29666148..29666298,29666539..29666595,29666774..29666868, 29667031..29667106,29667410..29667543)) /locus_tag="TCM_015802" /product="Membrane trafficking VPS53 family protein isoform 9" /inference="alignment:exonerate-protein:2:frave:gene24274" /inference="similar to AA sequence:Phytozome:Glyma09g02140.1" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc586t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc592t3" mRNA complement(join(29656943..29657676,29657906..29658001, 29658089..29658157,29658752..29658814,29659167..29659244, 29659641..29659734,29659815..29659948,29660025..29660102, 29660536..29660601,29660705..29660812,29661193..29661270, 29661524..29661583,29661677..29661781,29662388..29662717, 29663411..29663474,29664191..29664332,29664446..29664606, 29664930..29665054,29665869..29665939,29666148..29666298, 29666539..29666595,29666774..29666868,29667031..29667106, 29667410..29667543)) /locus_tag="TCM_015802" /product="Membrane trafficking VPS53 family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene24274" /inference="similar to AA sequence:Phytozome:GSVIVT01016094001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc592t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc592t3" mRNA complement(join(29656956..29657676,29657906..29658001, 29658089..29658157,29658752..29658814,29659167..29659244, 29659641..29659670,29660539..29660601,29660705..29660812, 29661193..29661270,29661524..29661583,29661677..29661781, 29662388..29662429,29662535..29662717,29663411..29663474, 29664191..29664332,29664446..29664606,29664930..29665054, 29665869..29666298,29666539..29666595,29666774..29666868, 29667031..29667106,29667410..29667543)) /locus_tag="TCM_015802" /product="Membrane trafficking VPS53 family protein isoform 8" /inference="alignment:exonerate-protein:2:frave:gene24274" /inference="similar to AA sequence:ricco:29670.m000151" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc571t5_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc592t3" mRNA complement(join(29657311..29657676,29657906..29658001, 29658089..29658157,29658752..29658814,29659167..29659244, 29659641..29659734,29659815..29659948,29660025..29660102, 29660536..29660601,29660705..29660812,29661193..29661270, 29661524..29661583,29661677..29661781,29662388..29662429, 29662535..29662717,29663411..29663474,29664191..29664332, 29664446..29664606,29664930..29665054,29665869..29665939, 29666148..29666298,29666539..29666595,29666774..29666868, 29667031..29667106,29667348..29667415)) /locus_tag="TCM_015802" /product="Membrane trafficking VPS53 family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene24274" /inference="similar to AA sequence:Phytozome:GSVIVT01016094001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04307t00001; alternateUTRof:Thecc1EG015802t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc592t3" CDS complement(join(29657371..29657676,29657906..29658001, 29658089..29658157,29658752..29658814,29659167..29659244, 29659641..29659670,29660539..29660601,29660705..29660812, 29661193..29661270,29661524..29661583,29661677..29661781, 29662388..29662429,29662535..29662717,29663411..29663474, 29664191..29664332,29664446..29664606,29664930..29665054, 29665869..29665939,29666148..29666298,29666539..29666595, 29666774..29666868,29667031..29667079)) /locus_tag="TCM_015802" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Membrane trafficking VPS53 family protein isoform 7" /protein_id="EOY24114.1" /db_xref="Phytozome:GSVIVT01016094001" /db_xref="TAIR:AT1G50500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQF4" /translation="MDKMSTLEYINQMFPTEASLSGVEPLMQKIQSEIRRVDAGILAA VRQQSNSGTKAKEDLAAATHAVEELTYKIREIKTKAEQSEMMVQEICRDIKKLDFAKK HITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKIT ELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQHLSDACLVVNALEPSVREELV NNFCSRELTSYEQIFEGAELAKLDKTERRYAWIKRRMRTNEEIWKIFPTSWLVPYRLC IQFCKKTRKQLEGILDNLKEKPDVATLLLALQRTLEFEDELAEKFGGGTQSREIGNDI EEIGRQNNSRSALDIRKKYEKKLAAHQGSENEEKVGNKDLSAPGAGFNFHGIISSCFE PHLIVYIELEEKTLMENLEKLVQEETWDVEEGSQNNVLSSSMQLFLIIKRSLKRCSAL TKSQTLYNLFRVFQRVLKAYATKLFARLPKGGTGIVAAATGMDGQIKTSDRDERVICY IVNSAEYCHKPIYFQFFLDKLASSLGPRFYMNIFKCKQISETGAQQMLLDTQAVKTIL LEIPSLGQQTSGAAGYSKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQ RILELKGLKKSDQQTILDDFNKGAPAISQPSSVAPVSQATPPAPPTTTVAAILNPASV GFIASREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFNA" CDS complement(join(29657371..29657676,29657906..29658001, 29658089..29658157,29658752..29658814,29659167..29659244, 29659641..29659734,29659815..29659948,29660025..29660102, 29660536..29660601,29660705..29660812,29661193..29661270, 29661524..29661583,29661677..29661781,29662388..29662429, 29662535..29662717,29663411..29663474,29664191..29664332, 29664446..29664606,29664930..29665054,29665869..29665939, 29666148..29666298,29666539..29666595,29666774..29666868, 29667031..29667079)) /locus_tag="TCM_015802" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Membrane trafficking VPS53 family protein isoform 1" /protein_id="EOY24108.1" /db_xref="Phytozome:GSVIVT01016094001" /db_xref="TAIR:AT1G50500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQF4" /translation="MDKMSTLEYINQMFPTEASLSGVEPLMQKIQSEIRRVDAGILAA VRQQSNSGTKAKEDLAAATHAVEELTYKIREIKTKAEQSEMMVQEICRDIKKLDFAKK HITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKIT ELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQHLSDACLVVNALEPSVREELV NNFCSRELTSYEQIFEGAELAKLDKTERRYAWIKRRMRTNEEIWKIFPTSWLVPYRLC IQFCKKTRKQLEGILDNLKEKPDVATLLLALQRTLEFEDELAEKFGGGTQSREIGNDI EEIGRQNNSRSALDIRKKYEKKLAAHQGSENEEKVGNKDLSAPGAGFNFHGIISSCFE PHLIVYIELEEKTLMENLEKLVQEETWDVEEGSQNNVLSSSMQLFLIIKRSLKRCSAL TKSQTLYNLFRVFQRVLKAYATKLFARLPKGGTGIVAAATGMDGQIKTSDRDERVICY IVNSAEYCHKTSGELAESVSKIIDSQFADRVDMSEVQDEFSAVITRSLVTLVHGLETK FDAEMAAMTRVPWGTLESVGDQSGYVNGINMILTSSIPVLGRLLSPIYFQFFLDKLAS SLGPRFYMNIFKCKQISETGAQQMLLDTQAVKTILLEIPSLGQQTSGAAGYSKFVSRE MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKSDQQTILDDFNKG APAISQPSSVAPVSQATPPAPPTTTVAAILNPASVGFIASREDVLTRAAALGRGAATT GFKRFLALTEAAKDRKDGPFRKLFNA" CDS complement(join(29657371..29657676,29657906..29658001, 29658089..29658157,29658752..29658814,29659167..29659244, 29659641..29659734,29659815..29659948,29660025..29660102, 29660536..29660601,29660705..29660812,29661193..29661270, 29661524..29661583,29661677..29661781,29662388..29662429, 29662535..29662717,29663411..29663474,29664191..29664332, 29664446..29664606,29664930..29665054,29665869..29665939, 29666148..29666298,29666539..29666595,29666774..29666868, 29667031..29667079)) /locus_tag="TCM_015802" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Membrane trafficking VPS53 family protein isoform 1" /protein_id="EOY24110.1" /db_xref="Phytozome:GSVIVT01016094001" /db_xref="TAIR:AT1G50500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQF4" /translation="MDKMSTLEYINQMFPTEASLSGVEPLMQKIQSEIRRVDAGILAA VRQQSNSGTKAKEDLAAATHAVEELTYKIREIKTKAEQSEMMVQEICRDIKKLDFAKK HITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKIT ELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQHLSDACLVVNALEPSVREELV NNFCSRELTSYEQIFEGAELAKLDKTERRYAWIKRRMRTNEEIWKIFPTSWLVPYRLC IQFCKKTRKQLEGILDNLKEKPDVATLLLALQRTLEFEDELAEKFGGGTQSREIGNDI EEIGRQNNSRSALDIRKKYEKKLAAHQGSENEEKVGNKDLSAPGAGFNFHGIISSCFE PHLIVYIELEEKTLMENLEKLVQEETWDVEEGSQNNVLSSSMQLFLIIKRSLKRCSAL TKSQTLYNLFRVFQRVLKAYATKLFARLPKGGTGIVAAATGMDGQIKTSDRDERVICY IVNSAEYCHKTSGELAESVSKIIDSQFADRVDMSEVQDEFSAVITRSLVTLVHGLETK FDAEMAAMTRVPWGTLESVGDQSGYVNGINMILTSSIPVLGRLLSPIYFQFFLDKLAS SLGPRFYMNIFKCKQISETGAQQMLLDTQAVKTILLEIPSLGQQTSGAAGYSKFVSRE MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKSDQQTILDDFNKG APAISQPSSVAPVSQATPPAPPTTTVAAILNPASVGFIASREDVLTRAAALGRGAATT GFKRFLALTEAAKDRKDGPFRKLFNA" CDS complement(join(29657371..29657676,29657906..29658001, 29658089..29658157,29658752..29658814,29659167..29659244, 29659641..29659670,29660539..29660601,29660705..29660812, 29661193..29661270,29661524..29661583,29661677..29661781, 29662388..29662429,29662535..29662717,29663411..29663474, 29664191..29664332,29664446..29664606,29664930..29665054, 29665869..29665946)) /locus_tag="TCM_015802" /note="encoded by transcript variant 8; alternatively spliced; dbxref ricco:29670.m000151" /codon_start=1 /product="Membrane trafficking VPS53 family protein isoform 8" /protein_id="EOY24115.1" /db_xref="TAIR:AT1G50500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQF4" /translation="MEVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKI TELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQHLSDACLVVNALEPSVREEL VNNFCSRELTSYEQIFEGAELAKLDKTERRYAWIKRRMRTNEEIWKIFPTSWLVPYRL CIQFCKKTRKQLEGILDNLKEKPDVATLLLALQRTLEFEDELAEKFGGGTQSREIGND IEEIGRQNNSRSALDIRKKYEKKLAAHQGSENEEKVGNKDLSAPGAGFNFHGIISSCF EPHLIVYIELEEKTLMENLEKLVQEETWDVEEGSQNNVLSSSMQLFLIIKRSLKRCSA LTKSQTLYNLFRVFQRVLKAYATKLFARLPKGGTGIVAAATGMDGQIKTSDRDERVIC YIVNSAEYCHKPIYFQFFLDKLASSLGPRFYMNIFKCKQISETGAQQMLLDTQAVKTI LLEIPSLGQQTSGAAGYSKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEF QRILELKGLKKSDQQTILDDFNKGAPAISQPSSVAPVSQATPPAPPTTTVAAILNPAS VGFIASREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFNA" CDS complement(join(29657371..29657676,29657906..29658001, 29658089..29658157,29658752..29658814,29659167..29659244, 29659641..29659734,29659815..29659948,29660025..29660102, 29660536..29660601,29660705..29660812,29661193..29661270, 29661524..29661583,29661677..29661703)) /locus_tag="TCM_015802" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Membrane trafficking VPS53 family protein isoform 2" /protein_id="EOY24109.1" /db_xref="Phytozome:GSVIVT01016094001" /db_xref="TAIR:AT1G50500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQF4" /translation="MENLEKLVQEETWDVEEGSQNNVLSSSMQLFLIIKRSLKRCSAL TKSQTLYNLFRVFQRVLKAYATKLFARLPKGGTGIVAAATGMDGQIKTSDRDERVICY IVNSAEYCHKTSGELAESVSKIIDSQFADRVDMSEVQDEFSAVITRSLVTLVHGLETK FDAEMAAMTRVPWGTLESVGDQSGYVNGINMILTSSIPVLGRLLSPIYFQFFLDKLAS SLGPRFYMNIFKCKQISETGAQQMLLDTQAVKTILLEIPSLGQQTSGAAGYSKFVSRE MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKSDQQTILDDFNKG APAISQPSSVAPVSQATPPAPPTTTVAAILNPASVGFIASREDVLTRAAALGRGAATT GFKRFLALTEAAKDRKDGPFRKLFNA" CDS complement(join(29658102..29658160,29659819..29659948, 29660025..29660102,29660536..29660601,29660705..29660812, 29661193..29661270,29661524..29661583,29661677..29661781, 29662388..29662429,29662535..29662717,29663411..29663474, 29664191..29664332,29664446..29664606,29664930..29665054, 29665869..29665939,29666148..29666298,29666539..29666595, 29666774..29666868,29667031..29667079)) /locus_tag="TCM_015802" /note="encoded by transcript variant 9; alternatively spliced" /codon_start=1 /product="Membrane trafficking VPS53 family protein isoform 9" /protein_id="EOY24116.1" /db_xref="Phytozome:Glyma09g02140.1" /db_xref="TAIR:AT1G50500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQF4" /translation="MDKMSTLEYINQMFPTEASLSGVEPLMQKIQSEIRRVDAGILAA VRQQSNSGTKAKEDLAAATHAVEELTYKIREIKTKAEQSEMMVQEICRDIKKLDFAKK HITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKIT ELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQHLSDACLVVNALEPSVREELV NNFCSRELTSYEQIFEGAELAKLDKTERRYAWIKRRMRTNEEIWKIFPTSWLVPYRLC IQFCKKTRKQLEGILDNLKEKPDVATLLLALQRTLEFEDELAEKFGGGTQSREIGNDI EEIGRQNNSRSALDIRKKYEKKLAAHQGSENEEKVGNKDLSAPGAGFNFHGIISSCFE PHLIVYIELEEKTLMENLEKLVQEETWDVEEGSQNNVLSSSMQLFLIIKRSLKRCSAL TKSQTLYNLFRVFQRVLKAYATKLFARLPKGGTGIVAAATGMDGQIKTSDRDERVICY IVNSAEYCHKTSGELAESVSKIIDSQFADRVDMSEVQDEFSAVITRSLVTLVHGLETK FDAEMAAMTRVPWGTLESVGDQSDIWCCWIFQICKSRDEQS" mRNA complement(join(29658132..29658814,29659167..29659244, 29659641..29659734,29659815..29659948,29660025..29660102, 29660536..29660601,29660705..29660812,29661193..29661270, 29661524..29661583,29661677..29661781,29662388..29662429, 29662535..29662717,29663411..29663474,29664191..29664332, 29664446..29664606,29664930..29665054,29665869..29665939, 29666148..29666298,29666539..29666595,29666774..29666868, 29667031..29667106,29667410..29667543)) /locus_tag="TCM_015802" /product="Membrane trafficking VPS53 family protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene24274" /inference="similar to AA sequence:Phytozome:Glyma15g13040.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc586t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc592t3" mRNA complement(join(29658132..29658157,29658752..29659244, 29659641..29659734,29659815..29659948,29660025..29660102, 29660536..29660601,29660705..29660812,29661193..29661270, 29661524..29661583,29661677..29661781,29662388..29662429, 29662535..29662717,29663411..29663474,29664191..29664332, 29664446..29664606,29664930..29665054,29665869..29665939, 29666148..29666298,29666539..29666595,29666774..29666868, 29667031..29667106,29667410..29667543)) /locus_tag="TCM_015802" /product="Membrane trafficking VPS53 family protein isoform 5" /inference="alignment:exonerate-protein:2:frave:gene24274" /inference="similar to AA sequence:Phytozome:Glyma15g13040.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc586t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc592t3" mRNA complement(join(<29658132..29658157,29658752..29658814, 29659167..29659244,29659641..29659734,29659815..29659948, 29660025..29660102,29660536..29660601,29660705..29660812, 29661193..29661270,29661524..29661583,29661677..29661781, 29662388..29662429,29662535..29662717,29663411..29663474, 29664191..29664332,29664446..29664606,29664930..29665054, 29665869..29666298,29666539..29666595,29666774..29666868, 29667031..29667106,29667410..29667543)) /locus_tag="TCM_015802" /product="Membrane trafficking VPS53 family protein isoform 6" /inference="alignment:exonerate-protein:2:frave:gene24274" /inference="similar to AA sequence:Phytozome:Glyma15g13040.1" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc586t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc592t3" CDS complement(join(<29658134..29658157,29658752..29658814, 29659167..29659244,29659641..29659734,29659815..29659948, 29660025..29660102,29660536..29660601,29660705..29660812, 29661193..29661270,29661524..29661583,29661677..29661781, 29662388..29662429,29662535..29662717,29663411..29663474, 29664191..29664332,29664446..29664606,29664930..29665054, 29665869..29665946)) /locus_tag="TCM_015802" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Membrane trafficking VPS53 family protein isoform 6" /protein_id="EOY24113.1" /db_xref="Phytozome:Glyma15g13040.1" /db_xref="TAIR:AT1G50500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQF4" /translation="MEVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKI TELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQHLSDACLVVNALEPSVREEL VNNFCSRELTSYEQIFEGAELAKLDKTERRYAWIKRRMRTNEEIWKIFPTSWLVPYRL CIQFCKKTRKQLEGILDNLKEKPDVATLLLALQRTLEFEDELAEKFGGGTQSREIGND IEEIGRQNNSRSALDIRKKYEKKLAAHQGSENEEKVGNKDLSAPGAGFNFHGIISSCF EPHLIVYIELEEKTLMENLEKLVQEETWDVEEGSQNNVLSSSMQLFLIIKRSLKRCSA LTKSQTLYNLFRVFQRVLKAYATKLFARLPKGGTGIVAAATGMDGQIKTSDRDERVIC YIVNSAEYCHKTSGELAESVSKIIDSQFADRVDMSEVQDEFSAVITRSLVTLVHGLET KFDAEMAAMTRVPWGTLESVGDQSGYVNGINMILTSSIPVLGRLLSPIYFQFFLDKLA SSLGPRFYMNIFKCKQISETGAQQMLLDTQAVKTILLEIPSLGQQTSGAAGYS" CDS complement(join(29658743..29658814,29659167..29659244, 29659641..29659734,29659815..29659948,29660025..29660102, 29660536..29660601,29660705..29660812,29661193..29661270, 29661524..29661583,29661677..29661781,29662388..29662429, 29662535..29662717,29663411..29663474,29664191..29664332, 29664446..29664606,29664930..29665054,29665869..29665939, 29666148..29666298,29666539..29666595,29666774..29666868, 29667031..29667079)) /locus_tag="TCM_015802" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Membrane trafficking VPS53 family protein isoform 4" /protein_id="EOY24111.1" /db_xref="Phytozome:Glyma15g13040.1" /db_xref="TAIR:AT1G50500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQF4" /translation="MDKMSTLEYINQMFPTEASLSGVEPLMQKIQSEIRRVDAGILAA VRQQSNSGTKAKEDLAAATHAVEELTYKIREIKTKAEQSEMMVQEICRDIKKLDFAKK HITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKIT ELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQHLSDACLVVNALEPSVREELV NNFCSRELTSYEQIFEGAELAKLDKTERRYAWIKRRMRTNEEIWKIFPTSWLVPYRLC IQFCKKTRKQLEGILDNLKEKPDVATLLLALQRTLEFEDELAEKFGGGTQSREIGNDI EEIGRQNNSRSALDIRKKYEKKLAAHQGSENEEKVGNKDLSAPGAGFNFHGIISSCFE PHLIVYIELEEKTLMENLEKLVQEETWDVEEGSQNNVLSSSMQLFLIIKRSLKRCSAL TKSQTLYNLFRVFQRVLKAYATKLFARLPKGGTGIVAAATGMDGQIKTSDRDERVICY IVNSAEYCHKTSGELAESVSKIIDSQFADRVDMSEVQDEFSAVITRSLVTLVHGLETK FDAEMAAMTRVPWGTLESVGDQSGYVNGINMILTSSIPVLGRLLSPIYFQFFLDKLAS SLGPRFYMNIFKCKQISETGAQQMLLDTQAVKTILLEIPSLGQQVS" CDS complement(join(29659077..29659244,29659641..29659734, 29659815..29659948,29660025..29660102,29660536..29660601, 29660705..29660812,29661193..29661270,29661524..29661583, 29661677..29661781,29662388..29662429,29662535..29662717, 29663411..29663474,29664191..29664332,29664446..29664606, 29664930..29665054,29665869..29665939,29666148..29666298, 29666539..29666595,29666774..29666868,29667031..29667079)) /locus_tag="TCM_015802" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Membrane trafficking VPS53 family protein isoform 5" /protein_id="EOY24112.1" /db_xref="Phytozome:Glyma15g13040.1" /db_xref="TAIR:AT1G50500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQF4" /translation="MDKMSTLEYINQMFPTEASLSGVEPLMQKIQSEIRRVDAGILAA VRQQSNSGTKAKEDLAAATHAVEELTYKIREIKTKAEQSEMMVQEICRDIKKLDFAKK HITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKIT ELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQHLSDACLVVNALEPSVREELV NNFCSRELTSYEQIFEGAELAKLDKTERRYAWIKRRMRTNEEIWKIFPTSWLVPYRLC IQFCKKTRKQLEGILDNLKEKPDVATLLLALQRTLEFEDELAEKFGGGTQSREIGNDI EEIGRQNNSRSALDIRKKYEKKLAAHQGSENEEKVGNKDLSAPGAGFNFHGIISSCFE PHLIVYIELEEKTLMENLEKLVQEETWDVEEGSQNNVLSSSMQLFLIIKRSLKRCSAL TKSQTLYNLFRVFQRVLKAYATKLFARLPKGGTGIVAAATGMDGQIKTSDRDERVICY IVNSAEYCHKTSGELAESVSKIIDSQFADRVDMSEVQDEFSAVITRSLVTLVHGLETK FDAEMAAMTRVPWGTLESVGDQSGYVNGINMILTSSIPVLGRLLSPIYFQFFLDKLAS SLGPRFYMNIFKCKQISETGAQQVLIILLFLCYPFFYCFILVVKHNVCCHCI" mobile_element 29670149..29670457 /note="source:scaffold_7_CACTA_0789 1861 2167" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29670437..29670564) /note="source:CACAO_PIF_E465_scaffold_115 6427 6554" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 29672285..29686419 /locus_tag="TCM_015803" /note="dbxref CacaoGD:Thecc1EG015803" mRNA join(29672285..29672628,29673424..29674465, 29675416..29675531,29675639..29675847,29676048..29676167, 29676826..29676954,29677069..29677194,29678021..29678076, 29678181..29678280,29678839..29678956,29679133..29679342, 29679553..29679877,29680379..29680472,29681198..29681306, 29681456..29681715,29681835..29681959,29682609..29682843, 29683202..29683390,29683478..29683764,29684000..29684207, 29684297..29684536,29684983..29685068,29685637..29686419) /locus_tag="TCM_015803" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G47020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037740t2" /inference="similar to AA sequence:Phytozome:GSVIVT01013249001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc949t6" mRNA join(29672313..29672628,29673424..29674465, 29675416..29675531,29675639..29675847,29676048..29676167, 29676826..29676954,29677069..29677194,29678021..29678076, 29678181..29678280,29678839..29678956,29679133..29679342, 29679553..29679877,29680379..29680472,29681198..29681306, 29681456..29681715,29681835..29681959,29682609..29682843, 29683202..29683390,29683478..29683764,29684000..29684208, 29685195..29686269) /locus_tag="TCM_015803" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G47020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037740t2" /inference="similar to AA sequence:Phytozome:GSVIVT01013249001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc949t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc949t6" CDS join(29673564..29674465,29675416..29675531, 29675639..29675847,29676048..29676167,29676826..29676954, 29677069..29677194,29678021..29678076,29678181..29678280, 29678839..29678956,29679133..29679342,29679553..29679877, 29680379..29680472,29681198..29681306,29681456..29681715, 29681835..29681959,29682609..29682843,29683202..29683390, 29683478..29683764,29684000..29684207,29684297..29684536, 29684983..29685068,29685637..29685796) /locus_tag="TCM_015803" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037740t2" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24117.1" /db_xref="Phytozome:GSVIVT01013249001" /db_xref="TAIR:AT5G47020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2T3" /translation="MVEWEAKICVQYYLHATLSNGQLQWMVMHPLLMHGYLCWCILFG HLYTSVLCLSLKQSENLVQKPRLLLSDVSVSGTSLHVEKSILLPKNGSLSCEDLGGVG SFNTTCLLNSNLYLSSDLYIYGTGNLEILPHVSIKCPTEGCMVTFNMSGNVNVGQHVA IVAGSVVIYASNLTVGPNSAINTTSLAGSPPPQTSGTPVGIDGAGGGHGGRGASCLKN NKTSFWGGDVYAWSTLSEPWSYGSQGGSTSIEHRFGGKGGGRVKLILKDMLYLNGSVT AEGGDGGLRGGGGSGGSIYIRAVKLKGYGTISAAGGMGWGGGGGGRISLDCYSIQEDV KVSVHGGFSFGCPGNSGAAGTYFNADLLSLRVGNDNVTTETETPLLDFPTSPLWSNVF VENNAKVLVPLLWTRVQVRGQISLYRGGAIVFGLSAYPVSEFELVAEELLMSDSIIKV FGAFRVSVKILLMWNSKIQIDGGGNTVVTASVLEARNLVVLRENSVISSNTNLGVYGQ GLLMLTGHGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDDSRSVVTNSLCESQTCPM DLITPPDDCHVNYTLSFSLQICRVEDLLVNGIVKGSIIHIHRARTVTIDADGLITASE LGCSKGIGKGNYFNGAGSGAGHGGRGGAGYFNGRVSNGGHEYGNADLPCELGSGTEGP NKSFGDVFGGGMIVMGSTQWPLLRLSIYGSLRADGQSFGKATINGNRSLIGGLGGGSG GTVLLFLQELMLAENSSLSTVGGDGGPLGGGGGGGGRVHFHWSNIGIGDEYVPVATID GFINSSGGAGDNGGLFGDEGTVTGKKCPKGLYGTFCRECPIGTYKDVDGSDEDLCTPC PLELLPNRANFIYVRGGVCQPFCPYKCISDKYRMPNCYTPLEELMYTFGGPWPFALLL SGVLVLLAVLLSTLRIKLVESSSYGANIEHQSSHHTPYLLSLSEVRGTRAEETQSHVY RMYFMGPNTFREPWHLPYSPSDAIIEIVYEDAFNRFIDEINSVAAYDWWEGSVHSILS VLAYPCAWSWKQWRRRKKVHRLQEYVKSEYDHSCLRSCRSRALYKGMKVGATPDLMVA YIDFFLGGDEKRVDMVSIIQKRFPMCIIFGGNGSYMSPYNLHSDTLLTNLLGQHIPPT VWNRLVAGVNAQLRTVRHGSIRSALVPVMDWIASHGNPQLEFHGVKIELGWFQATASG YYQLGILVVAGDYTFHNLHQPDMLDRSNDGYPRKDAASAGQSLKQLQQNWPYPTHALS RKKITGGINGGLINDATLRSLEFKRDFLFPFSLLLHNTRPVGRQDSLQLLITSMLLAD LSVTLLTLLQFYWISLGVFLAVLLILPLSLLSPFPAGLNALFSKEPRRASLARIYSLW NATSLSNIAVACICGIIHYGVSSFQPPDKENTWNSRREDDKWWLLPTILLLFKSIQAR FVDWHIANLEIQDFSLFCPDPDAFWAHEPTS" CDS join(29673564..29674465,29675416..29675531, 29675639..29675847,29676048..29676167,29676826..29676954, 29677069..29677194,29678021..29678076,29678181..29678280, 29678839..29678956,29679133..29679342,29679553..29679877, 29680379..29680472,29681198..29681306,29681456..29681715, 29681835..29681959,29682609..29682843,29683202..29683390, 29683478..29683764,29684000..29684208,29685195..29685211) /locus_tag="TCM_015803" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037740t2" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24118.1" /db_xref="Phytozome:GSVIVT01013249001" /db_xref="TAIR:AT5G47020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2T3" /translation="MVEWEAKICVQYYLHATLSNGQLQWMVMHPLLMHGYLCWCILFG HLYTSVLCLSLKQSENLVQKPRLLLSDVSVSGTSLHVEKSILLPKNGSLSCEDLGGVG SFNTTCLLNSNLYLSSDLYIYGTGNLEILPHVSIKCPTEGCMVTFNMSGNVNVGQHVA IVAGSVVIYASNLTVGPNSAINTTSLAGSPPPQTSGTPVGIDGAGGGHGGRGASCLKN NKTSFWGGDVYAWSTLSEPWSYGSQGGSTSIEHRFGGKGGGRVKLILKDMLYLNGSVT AEGGDGGLRGGGGSGGSIYIRAVKLKGYGTISAAGGMGWGGGGGGRISLDCYSIQEDV KVSVHGGFSFGCPGNSGAAGTYFNADLLSLRVGNDNVTTETETPLLDFPTSPLWSNVF VENNAKVLVPLLWTRVQVRGQISLYRGGAIVFGLSAYPVSEFELVAEELLMSDSIIKV FGAFRVSVKILLMWNSKIQIDGGGNTVVTASVLEARNLVVLRENSVISSNTNLGVYGQ GLLMLTGHGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDDSRSVVTNSLCESQTCPM DLITPPDDCHVNYTLSFSLQICRVEDLLVNGIVKGSIIHIHRARTVTIDADGLITASE LGCSKGIGKGNYFNGAGSGAGHGGRGGAGYFNGRVSNGGHEYGNADLPCELGSGTEGP NKSFGDVFGGGMIVMGSTQWPLLRLSIYGSLRADGQSFGKATINGNRSLIGGLGGGSG GTVLLFLQELMLAENSSLSTVGGDGGPLGGGGGGGGRVHFHWSNIGIGDEYVPVATID GFINSSGGAGDNGGLFGDEGTVTGKKCPKGLYGTFCRECPIGTYKDVDGSDEDLCTPC PLELLPNRANFIYVRGGVCQPFCPYKCISDKYRMPNCYTPLEELMYTFGGPWPFALLL SGVLVLLAVLLSTLRIKLVESSSYGANIEHQSSHHTPYLLSLSEVRGTRAEETQSHVY RMYFMGPNTFREPWHLPYSPSDAIIEIVYEDAFNRFIDEINSVAAYDWWEGSVHSILS VLAYPCAWSWKQWRRRKKVHRLQEYVKSEYDHSCLRSCRSRALYKGMKVGATPDLMVA YIDFFLGGDEKRVDMVSIIQKRFPMCIIFGGNGSYMSPYNLHSDTLLTNLLGQHIPPT VWNRLVAGVNAQLRTVRHGSIRSALVPVMDWIASHGNPQLEFHGVKIELGWFQATASG YYQLGILVVAGDYTFHNLHQPDMLDRSNDGYPRKDAASAGQSLKQLQQNWPYPTHALS RKKITGGINGGLINDATLRSLEFKRDFLFPFSLLLHNTRPVGRQELMQC" mobile_element 29686578..29686624 /note="source:scaffold_9_CACTA_0934 6326 6372" /mobile_element_type="transposon:TIR/CACTA" gene 29686826..29688882 /locus_tag="TCM_015804" /note="dbxref CacaoGD:Thecc1EG015804" mRNA join(29686826..29687218,29688366..29688882) /locus_tag="TCM_015804" /product="ATPase, F1 complex, delta/epsilon subunit" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g033950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005791t1" /inference="similar to AA sequence:ricco:29628.m000785" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9729t1" CDS join(29686952..29687218,29688366..29688710) /locus_tag="TCM_015804" /note="dbxref ricco:29628.m000785; paralog of Thecc1EG005791t1" /codon_start=1 /product="ATPase, F1 complex, delta/epsilon subunit" /protein_id="EOY24119.1" /db_xref="TAIR:AT5G47030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q96252" /translation="MFRQASRLLARTTTATTWRRSRAFSTDLPATPTEDSTFIESWKK VIPNMDPPKTPSSFMTPRPATPSSIPSKITVNFVLPYASELSTKEVDMVIVPATTGQM GVLPGHVPTIAELKPGILSVHEGNDVTKYFLSSGFAFIHANSVADIIAVEAVPLDCVD PALVQKGLAEFTQRLGTATSDLEKAEAQIGVDVHSALNSALTG" gene complement(29688796..29698100) /locus_tag="TCM_015805" /note="dbxref CacaoGD:Thecc1EG015805" mRNA complement(join(29688796..29688833,29688906..29689155, 29689687..29690028,29690468..29690569,29690772..29691017, 29691428..29691622,29691982..29692284,29692788..29693001, 29693284..29693414,29694113..29694319,29694415..29694616, 29694888..29695015,29695316..29695399,29695485..29695664, 29695810..29695901,29696259..29696428,29696604..29696712, 29696818..29696930,29697441..29698100)) /locus_tag="TCM_015805" /product="Lon protease 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03160.1" /inference="similar to AA sequence:Phytozome:GSVIVT01013264001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9289t2" mobile_element complement(29689574..29689637) /note="source:CACAO_M_S_E14444_F98_scaffold_2 2023 2084" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(29689945..29690028,29690468..29690569, 29690772..29691017,29691428..29691622,29691982..29692284, 29692788..29693001,29693284..29693414,29694113..29694319, 29694415..29694616,29694888..29695015,29695316..29695399, 29695485..29695664,29695810..29695901,29696259..29696428, 29696604..29696712,29696818..29696930,29697441..29697547)) /locus_tag="TCM_015805" /codon_start=1 /product="Lon protease 2" /protein_id="EOY24120.1" /db_xref="Phytozome:GSVIVT01013264001" /db_xref="TAIR:AT5G47040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64948" /translation="MAQSVELPGRLAILPFRNKVLLPGAFIRIRCTSHSSVKLVEQEL WQREEKGLIGILPVRDAADMTSMDSVLSQGVGSESGERSSKVKASTSDAHKVDGKNHP EVIHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFNVEELSTRGPYCTAKISS LEMTKAEMEQVEQDPDFVMLSRQFKATAMELISVLEQKQKTGGRIKVLLETLPLHKLA DIFVASFEMSFEEQLSMLDSVDPKIRLSKANELVDRHLQSIRVAEKITQKVEGQLSKS QKEFLLRQQMRAIKEELGDNDDDEDDLAALERKMQSAGLPSNIWKHAQRELRRLKKMQ PQQPGYNSSRVYLELLADLPWEKASEEQELDLKAAKDRLDSDHYGLVKVKQRIIEYLA VRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVRDEADIRGHRRT YIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKSFNDH YLNVPFDLSKVIFVATANRVQPIPPPLLDRMEVIELPGYTAEEKLRIAIQHLIPRVLD QHGLSSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVRVAEQEQAVSVSK DVHKLTSPLLDNRLAEGAEMEMEVIPMVVNNHEISNAYRIASPLVVDEAMLEKILGPP RFDDREAADRVATPGVSVGLVWTTFGGEVQFVEATAMIGNGELHLTGQLGDVIKESAQ IALTWVRARAADLKFAAAEETNLLRGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFS KKSVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAV LSSLEILLAKRMEDVLEFAFDGGSPWRQNSKL" mobile_element complement(29708128..29708183) /note="source:CACAO_M_S_E51240_F74_scaffold_4 2246 2302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29712432..29712513 /note="source:scaffold_5_CACTA_0596 1768 1849" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29716674..29716880) /note="source:scaffold_4_CACTA_0482 6081 6293" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29721695..29721748) /note="source:CACAO_M_E85544_F144_scaffold_11 1232 1285" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29721703..29721756 /note="source:CACAO_M_E45504_F98_scaffold_6 2021 2074" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29723941..29725717 /locus_tag="TCM_015806" /note="dbxref CacaoGD:Thecc1EG015806" mRNA join(29723941..29724201,29724301..29724730, 29724824..29725717) /locus_tag="TCM_015806" /product="SBP family protein" /inference="alignment:exonerate-protein:2:frave:gene10640" /inference="similar to AA sequence:frave:gene10640" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06525t00001" CDS join(29724155..29724201,29724301..29724730, 29724824..29725363) /locus_tag="TCM_015806" /note="dbxref frave:gene10640" /codon_start=1 /product="SBP family protein" /protein_id="EOY24121.1" /db_xref="TAIR:AT1G32740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTE1" /translation="MAVQAQYPSNVLLLNRSGQEGHEFSLQQQAGVFLDQSHMIFNNG SNHSNINNQNNNPRKRGREVAGAITAPINSFSMQTQPPQLIDLSQLHQPNVVSTGLRL SFGDQQHNLQQNQNQSFQHQQQNLVSNSSAFLSIISEDLATQIKRQREELDQFLQVQG EELRRMLAEKRNRHYRALLGAAEESVARRLREKEAEVEKATRRNSELEARATQLSVEA QVWQAKARAQEATAASLQAQLQQAIMSGGAAAAQDIRRGEEGLKCGGGVEGQAEDAES AYVDPERVAASGPVCKACRTRVASVVLLPCRHLCLCTECDRVAQACPLCLTVRNSSVE VFLS" mobile_element 29728559..29728571 /note="source:INTACT319_F3_scaffold_1-int 5723 5776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29728572..29728614 /note="source:CACAO_PIF_E119_scaffold_3 2587 2629" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 29730235..29732437 /locus_tag="TCM_015807" /note="dbxref CacaoGD:Thecc1EG015807" mRNA join(29730235..29730984,29731956..29732437) /locus_tag="TCM_015807" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage" CDS join(29730819..29730984,29731956..29732221) /locus_tag="TCM_015807" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24122.1" /translation="MIDCQCMANFMVALLPIPSFLVGSPLLRASQENRALKGGIRFIA CSSQDHNSFPSGIGRRNYFLLPSAIKSCKLKFNNQHQRLKVGLGWLRCQSSSPGILKA QGGRGASPVVKRLGGGDPPKYTQNNFISSKKLVFSLSHFSP" mobile_element complement(29735365..29736096) /note="source:CACAO_MITE_S250_scaffold_10 132 890" /mobile_element_type="transposon:TIR/MITE" gene 29742716..29743914 /locus_tag="TCM_015808" /note="dbxref CacaoGD:Thecc1EG015808" mRNA join(29742716..29743236,29743688..29743914) /locus_tag="TCM_015808" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03400.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03400.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12779t00001" CDS join(29742929..29743236,29743688..29743874) /locus_tag="TCM_015808" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24123.1" /db_xref="Phytozome:POPTR_0003s03400.1" /db_xref="TAIR:AT5G47060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2T8" /translation="MDASGPSRRPCFIEEDDGLASLADMEAGYSGSHYHSPKQNGFFS RPLCYSRRSSLRNLSSSVSSPRSARFYDARFEDHQPHFLDACFLCKKPLGGNRDIFMY RGDTPFCSEDCRQEQIDVDEAKEKNWNLSSSMKALRKKDQRKSTSPTEAQDYPFRAGT VAAA" gene complement(29744677..29745541) /locus_tag="TCM_015809" /note="dbxref CacaoGD:Thecc1EG015809" mRNA complement(29744677..29745541) /locus_tag="TCM_015809" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS complement(29745092..29745436) /locus_tag="TCM_015809" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24124.1" /translation="MQTIFPNRPGPGSNKMFNWESWPSKVNIVVSHSNPWPLLVHIPI QTESLDCKSFPILSHTGFPSGFELWSSRCKPKPIVLLRPEDLAGYDRHLKLAQTGNKF SQYFHRIQMLCS" gene 29747563..29780957 /locus_tag="TCM_015810" /note="dbxref CacaoGD:Thecc1EG015810" mRNA join(29747563..29747756,29748685..29748752, 29749354..29749488,29749595..29749645,29750224..29750318, 29750407..29750524,29751122..29751223,29751328..29751516, 29751600..29751760,29752096..29752266,29752997..29753089, 29753187..29753511,29753613..29753717,29753797..29753892, 29754319..29754386,29755040..29755160,29755242..29755448, 29755547..29755750,29755855..29755964,29756614..29756710, 29756846..29756944,29757449..29757604,29757687..29757761, 29757843..29758328,29758429..29758776,29758954..29759085, 29759317..29759430,29759512..29759696,29759843..29759951, 29760518..29760661,29760778..29761062,29761271..29761909, 29762001..29762192,29763216..29763319,29763707..29763996, 29764130..29764214,29764299..29764637,29764812..29765174, 29765252..29765741,29766116..29766279,29767154..29767316, 29767461..29767730,29768435..29768629,29768756..29768798, 29769653..29769777,29769917..29770429,29771158..29771934, 29772061..29772134,29772241..29772589,29772676..29772774, 29772853..29773008,29773316..29773497,29773600..29774091, 29774540..29774717,29774804..29774940,29775962..29776088, 29776208..29776429,29776501..29776860,29777963..29778121, 29778211..29778492,29778559..29778771,29778859..29778911, 29780016..29780124,29780333..29780957) /locus_tag="TCM_015810" /product="Pleckstrin (PH) domain-containing protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene10646" /inference="similar to AA sequence:ricco:29822.m003519" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b015280t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc290t22" CDS join(29747660..29747756,29748685..29748752, 29749354..29749488,29749595..29749645,29750224..29750318, 29750407..29750524,29751122..29751223,29751328..29751516, 29751600..29751760,29752096..29752266,29752997..29753089, 29753187..29753511,29753613..29753717,29753797..29753892, 29754319..29754386,29755040..29755160,29755242..29755448, 29755547..29755750,29755855..29755964,29756614..29756710, 29756846..29756944,29757449..29757604,29757687..29757761, 29757843..29758328,29758429..29758776,29758954..29759085, 29759317..29759430,29759512..29759696,29759843..29759951, 29760518..29760661,29760778..29761062,29761271..29761909, 29762001..29762192,29763216..29763319,29763707..29763996, 29764130..29764214,29764299..29764637,29764812..29765174, 29765252..29765741,29766116..29766279,29767154..29767316, 29767461..29767730,29768435..29768629,29768756..29768798, 29769653..29769777,29769917..29770429,29771158..29771934, 29772061..29772134,29772241..29772589,29772676..29772774, 29772853..29773008,29773316..29773497,29773600..29774091, 29774540..29774717,29774804..29774940,29775962..29776088, 29776208..29776429,29776501..29776860,29777963..29778121, 29778211..29778492,29778559..29778771,29778859..29778911, 29780016..29780124,29780333..29780677) /locus_tag="TCM_015810" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29822.m003519" /codon_start=1 /product="Pleckstrin (PH) domain-containing protein isoform 2" /protein_id="EOY24126.1" /db_xref="TAIR:AT4G17140.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JNE2" /translation="MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKP EALNALKLPVKVPWSRLGQDPVLVYLDRIFLLAEPATSVEGRTEDAIQEAKKSRVREM EMKLLERTHQLKSEMNKSWLGSLISTIIGNLKLSISNIHIRYEDLESNPGHPFAAGLT LEKLSAVTVDDSGKETFVTGGALDCIQKCVELDRLALYLDSDILPWHIDKPWEDLLPS EWVQVFRFGTKYGRPADCPIKEHTYILQPVTGNAKYLKLRQNESSDSGEPLQKAAVNL DDVTLCLSKDGYRDVLKLADNFTAFNQRLKYAHYRPTVSLKSDPRSWWKYAYKAVSDQ MKKASGKLSWEQVLRYTRLRKKYISLYASLLKSDVNRPVVDDNKEIEELDRGLDIELI LQWRMLAHKFVEQSIESENHLKKQKAKQSWWSFGWASQSLKDESESFSFSEEDWERLN KIIGYKEGDEEQSLMINEKPDILQTSLEVHMKHNASKLLDGAHACLAELSCEGLDCSI KLYPETKVFDLRLGSYQLSSPSGLLAESATSSDSLVGIFCYKPFDAKVDWSMVAKASP CYVTYLKDSLDEVIKFFESNTAVSQTIALETAAAVQMTIDGVKRSAQQQVNRALKDHA RFLLDLDIAAPKITIPTEFRPDSKHSTKLLLDLGNLVIRSQDDYARASSEELDLYLQF DLVLSDVSAFLVDGDYHWSKTSLQKSAASAIIDGICLLPVIDKCRVILKLQQIRLENP SYPSTRLAVQLPSLGFHFSPARYHRLMQVFKIFQDEDNDRPDLLRPWNQADFEGWLSV LSRKGVGHREAVWQRRYLCLVGPFLYVLESPGSKSYKQYISLRGKQAYPVPAELVGDV ESVLAVCGAARSNSKVVEDVNALILLCDSDDSRKAWQTRLQGAIYLASGSAPIISLSE ASSDSETEPNDKHDTTDLAKIESIFITGVLDELKISFCYNHRHERSFIKVLLAEEYPL FEFRAIGGQVELSIKGNDMFIGTVLKSLEIEDMICCNTVSRPCYLARSFIRSADAQSL LDDAEKQNLESKSPSEGDDKFYEAPESLVDPAECTTPTPRKAYEFGSLQKFLSSEKTS LTTLSFSRVSGLLPEDNLLLRREDIGLSDTLDSFVKAQIVIYDQNSPLYNNIDMQVTV TLATLSFFCRRPTILAIMEFANAVTIEDESCESFSDNSSAVGVKHDISSEDPADNQQS TSVEEPVVKGLLGKGKSRIIFNLKLNMAHAQILLMNENETKLATLSQENLLTDIKVFP SSFSINAALGNLRISDDSLPSSHMYFWICDMRDPGGTSFVELEFTSFSIDDEDYEGYE YSLVGQLSEVRIVYLNRLVQEVISYFMGLVPKDSKDVVKFKDQVTNSEKWFTTSEIEG SPALRLDLSLRKPIILMPRRTDSLDYLKLDIVHITVQSTFQWFSGSKSDLNAVHFEIM TILVEDINLNVGTESDLSESIIKDVKGVSIVIRRSLRDLMHQVPSIEAAIKIEELKAE LSNKEYQIVTECAVSNISETPHIVPPLSSDFLTSSVDVVEPVIPQNVVGEPSTPNDET WTVMKVSFVVNLVELCLYVGEWDSPLATVQASGAWLLYKSNTLGEGFLSSSLKGFTVI DDRLGTEEEFRLAIGMPKNPLVSVSDTNSQLISKGNVTIEDGFKPFPTMLILDAKFSQ FSTSVSVCVQRPQLLVALDFLLALVEFFVPTVGSMLSNEEDKKSLHMVDAITLDKSTY TQPSAQFSLSPVKPLIADDEKFDHFIYDGNGGILYLKDREGVDLSAPSNEAMIYVGNG KKLQFKNVLIKNGQFLDSCISLGTNSGYSASKDDLVYIEGGNEGVQVDASRENAKDMA PQNAVVDRSAEFIIEFQAIGPELTFYNASKNVVESPVLSNKLLHGQLDAYGRLVLKGD TVEMTVNALGLTMESNGIRILEPFDMSIKYSNASGKTNIHLAVSDIFMNFSFSILRLF LAVEEDILAFLRTASKEMTVVCSQFDRVGKIINSNNDQIYAFWRARAPVGFAVLGDYL TPLDKPPTKGVLAVNTNYVPVKRPVSFNRIWPPLDSGGISDVGEVKSNSLSNGMLGDG ESSCSVWFPEAPEGYVALGCVVSPGKLRPSPSSTFCILASFVSPCSLRDCITITDTNL YPSSLAFWRVDNSLGTFLPAEPTTFSLLARAYELRHVMIGSSEVYPKASISSHIQASP SGHTHNQWSESSTVVNSGRRFEAVASFRLVWWNRGSSSRKQLSIWRPVVPQGMVYFGD IAVQGYEPPNTCIVLHDGGDEELFKSPLSFQLVGQIKKQRGIESISFWLPQAPPGYVA LGCIAYKGPPKLQDFSALRCIRSDMVTGDQFLEESVWDTLDAKFGTEPFSIWAVANEL GTFVVRGGSRKPPRRFALKLADPYLQSGSDDTVVDAEIGTFSAALFDDYGGLMVPLFN ISLSGISFSLHGRPDYSNSTVSFSLAARSYNDKYESWEPIVEPVDGFLRYQYDPNAPG AASQLRFTSTRDLNLNMSVSNVNMIIQAYASWNNLSDVHQYYKRPEAFFSSYATRSIV DVHHKRSYYIIPQNKLGQDIFIQASETGGFSDIIRMPSGNMKPIKVPVSKNMLDSHLK GKICRKVRTMVAVIIADAMFPRVEGLTSPQYTVAVRLSPDNSLPSESLLHHQSARTCG CISSHFSSDIELVDWNEIFFFKVDSPISYTVELIVTDMGKGDAIGFFSAPLNQIAMYV PDDSHKYDYNNSLMWMDLSLAASMNTTQADGSDKKSSGKLRCAIILSPKPNVDERNEL FIGGRKSGFIQISPSMEGPWTTVRLNYAAPTACWRLGNDVVASEVSVKDGNRYVNIRS FVSVHNNTDFILDLCLVRKASSEMMEPPTDVSMPEGLQVDGRTQTDELFETEMYDPNI GWVGSNVQLNQDQTDGGGFQQATSGVELPSGWEWIDDWHLDTSSTNTAAGWVYAPDFE SLKWPESDDSLIFSNSVRQRKWIRNRKQISFDPKKEIFVGQLKPGDRVPLPLSALTQS GLFVFQLRPSNLDGSDKYSWSYVVGKPGRLEVSGKPNGISEIYVSALTESEELLCCTQ LSEASSNASSHRLWFCLSIQATKISKDIRSDPIMDWSLVIKSPLSITNYLPLTAEYSI LEMRASGHFIACSRGIFLPGRTVNIYNADTCNPLFFSLLPQKGWLPICEAVLISHPRE IPSKTISLRSSISGRIVHLIVEQNYEKEQTMMAKTIRVYAPYWFSVSRCPPLTYRLVN IGGKKQKRKIGFPLHSKMKNEGIIDEITDEEMYSGHTIASALNFNFLGLSVSLSESSN EHFGPVKDLSPLGDMDGSVDLYAYNADGKCMRLFISAKPCPYQSVPTKVITVRPYMTF TNRLGRDIYIKLSSEDEPKVLRASDSRISFVHNENGGTDKLQVRLEDTEWSFPVQIVK EDTITLVLRRHDATRTFLKVEIRGYEEGSRFIVVFRLGSTKGPVRIENRTTIKTICIR QSGFGEDAWISLGPLSTTNFSWEDPYGQKFIDAKIDGDFNNRVLKVDLARAGQFSSGE ELGMQLHVFETGNIKVVRFTDDQTWKVSSCEDAGPLTSAERPQINVTPVEIIIELGVV GVSVVDHMPKELFYLYLDRVFISYSTGYDGGTTSRFKLIMGHLQIDNQLPLTLMPVLL APEQMSDIHHPVCKMTITMQNANTDGIQVYPYVYIRVTDKCWRLNIHEPIIWALVDFY NNLQLDHIPQSSSVTEVDPEIRVDLIDVSEVRLKVSLETAPAQRPHGVLGVWSPILSA IGNAFKIQVHLRRVMRKDRFMRRSSIASAVGNRIWRDLIHNPLHLLFSVDVLGMTSST LASLSKGFAELSTDGQFLQLRSKQVTSRRITGVGDGIIQGTEALAQGVAFGVSGVVTK PVESARQNGLLGLAHGIGRAFVGFIVQPVSGALDFFSLTVDGIGASCSKCLEVLNSKS TFQRIRNPRAIHADGVLREYSEREATGQMVLYLAEASRHFGCTEIFREPSKFAWSDYY EEHFIVPYQKIVLVTNKRVMLLQCSSLDKMDKKPCKIMWDVPWEELMALELAKAGYQL PSYLLLHLKNFRRSETFVRVIKCSVEEVEGIEPQAVKICSVVRKMWKAHPSDMNNIVP KVPSSQRYVHFAWSETDRKPLHASKKSIIKSGEPSSSSASDETKFVKHSINFLKIWSS ERELKGRCALCRKQVADDGGVCSIWRPICPDGYVSVGDIARIGSHPPNVAAVYRNIDN LFTFPVGYDLVWRNCPDDYTNLVSIWYPRAPEGYTAPGCVAVAGFAEPEADLVRCVAE TLAEETTFEEQKVWSAPESYPWGCHIYQVQSDALHFVALRESKEESEWSATRVRDDLP LLQSSEAQ" mRNA join(29747729..29747756,29748685..29748788, 29749354..29749488,29749595..29749645,29750224..29750318, 29750407..29750524,29751122..29751223,29751328..29751516, 29751600..29751760,29752096..29752266,29752997..29753089, 29753187..29753511,29753613..29753717,29753797..29753892, 29754319..29754386,29755040..29755160,29755242..29755448, 29755547..29755750,29755855..29755964,29756614..29756710, 29756846..29756944,29757449..29757604,29757687..29757761, 29757843..29758328,29758429..29758776,29758954..29759085, 29759317..29759430,29759512..29759696,29759843..29759951, 29760518..29760661,29760778..29761062,29761271..29761909, 29762001..29762192,29763216..29763319,29763707..29763996, 29764130..29764214,29764299..29764637,29764812..29765174, 29765252..29765741,29766116..29766279,29767154..29767316, 29767461..29767730,29768435..29768629,29768756..29768798, 29769653..29769777,29769917..29770429,29771158..29771934, 29772061..29772134,29772241..29772589,29772676..29772774, 29772853..29773008,29773316..29773497,29773600..29774091, 29774540..29774717,29774804..29774940,29775962..29776088, 29776208..29776429,29776501..29776860,29777963..29778121, 29778211..29778492,29778559..29778771,29778859..29779090) /locus_tag="TCM_015810" /product="Pleckstrin (PH) domain-containing protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene10646" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013270001" /inference="similar to AA sequence:ricco:29822.m003519" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc460t11; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc460t11; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc290t22" CDS join(29748705..29748788,29749354..29749488, 29749595..29749645,29750224..29750318,29750407..29750524, 29751122..29751223,29751328..29751516,29751600..29751760, 29752096..29752266,29752997..29753089,29753187..29753511, 29753613..29753717,29753797..29753892,29754319..29754386, 29755040..29755160,29755242..29755448,29755547..29755750, 29755855..29755964,29756614..29756710,29756846..29756944, 29757449..29757604,29757687..29757761,29757843..29758328, 29758429..29758776,29758954..29759085,29759317..29759430, 29759512..29759696,29759843..29759951,29760518..29760661, 29760778..29761062,29761271..29761909,29762001..29762192, 29763216..29763319,29763707..29763996,29764130..29764214, 29764299..29764637,29764812..29765174,29765252..29765741, 29766116..29766279,29767154..29767316,29767461..29767730, 29768435..29768629,29768756..29768798,29769653..29769777, 29769917..29770429,29771158..29771934,29772061..29772134, 29772241..29772589,29772676..29772774,29772853..29773008, 29773316..29773497,29773600..29774091,29774540..29774717, 29774804..29774940,29775962..29776088,29776208..29776429, 29776501..29776860,29777963..29778121,29778211..29778492, 29778559..29778771,29778859..29778915) /locus_tag="TCM_015810" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29822.m003519" /codon_start=1 /product="Pleckstrin (PH) domain-containing protein isoform 3" /protein_id="EOY24127.1" /db_xref="TAIR:AT4G17140.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JNE2" /translation="MQLKPEALNALKLPVKVKAGFLGSVKLKVPWSRLGQDPVLVYLD RIFLLAEPATSVEGRTEDAIQEAKKSRVREMEMKLLERTHQLKSEMNKSWLGSLISTI IGNLKLSISNIHIRYEDLESNPGHPFAAGLTLEKLSAVTVDDSGKETFVTGGALDCIQ KCVELDRLALYLDSDILPWHIDKPWEDLLPSEWVQVFRFGTKYGRPADCPIKEHTYIL QPVTGNAKYLKLRQNESSDSGEPLQKAAVNLDDVTLCLSKDGYRDVLKLADNFTAFNQ RLKYAHYRPTVSLKSDPRSWWKYAYKAVSDQMKKASGKLSWEQVLRYTRLRKKYISLY ASLLKSDVNRPVVDDNKEIEELDRGLDIELILQWRMLAHKFVEQSIESENHLKKQKAK QSWWSFGWASQSLKDESESFSFSEEDWERLNKIIGYKEGDEEQSLMINEKPDILQTSL EVHMKHNASKLLDGAHACLAELSCEGLDCSIKLYPETKVFDLRLGSYQLSSPSGLLAE SATSSDSLVGIFCYKPFDAKVDWSMVAKASPCYVTYLKDSLDEVIKFFESNTAVSQTI ALETAAAVQMTIDGVKRSAQQQVNRALKDHARFLLDLDIAAPKITIPTEFRPDSKHST KLLLDLGNLVIRSQDDYARASSEELDLYLQFDLVLSDVSAFLVDGDYHWSKTSLQKSA ASAIIDGICLLPVIDKCRVILKLQQIRLENPSYPSTRLAVQLPSLGFHFSPARYHRLM QVFKIFQDEDNDRPDLLRPWNQADFEGWLSVLSRKGVGHREAVWQRRYLCLVGPFLYV LESPGSKSYKQYISLRGKQAYPVPAELVGDVESVLAVCGAARSNSKVVEDVNALILLC DSDDSRKAWQTRLQGAIYLASGSAPIISLSEASSDSETEPNDKHDTTDLAKIESIFIT GVLDELKISFCYNHRHERSFIKVLLAEEYPLFEFRAIGGQVELSIKGNDMFIGTVLKS LEIEDMICCNTVSRPCYLARSFIRSADAQSLLDDAEKQNLESKSPSEGDDKFYEAPES LVDPAECTTPTPRKAYEFGSLQKFLSSEKTSLTTLSFSRVSGLLPEDNLLLRREDIGL SDTLDSFVKAQIVIYDQNSPLYNNIDMQVTVTLATLSFFCRRPTILAIMEFANAVTIE DESCESFSDNSSAVGVKHDISSEDPADNQQSTSVEEPVVKGLLGKGKSRIIFNLKLNM AHAQILLMNENETKLATLSQENLLTDIKVFPSSFSINAALGNLRISDDSLPSSHMYFW ICDMRDPGGTSFVELEFTSFSIDDEDYEGYEYSLVGQLSEVRIVYLNRLVQEVISYFM GLVPKDSKDVVKFKDQVTNSEKWFTTSEIEGSPALRLDLSLRKPIILMPRRTDSLDYL KLDIVHITVQSTFQWFSGSKSDLNAVHFEIMTILVEDINLNVGTESDLSESIIKDVKG VSIVIRRSLRDLMHQVPSIEAAIKIEELKAELSNKEYQIVTECAVSNISETPHIVPPL SSDFLTSSVDVVEPVIPQNVVGEPSTPNDETWTVMKVSFVVNLVELCLYVGEWDSPLA TVQASGAWLLYKSNTLGEGFLSSSLKGFTVIDDRLGTEEEFRLAIGMPKNPLVSVSDT NSQLISKGNVTIEDGFKPFPTMLILDAKFSQFSTSVSVCVQRPQLLVALDFLLALVEF FVPTVGSMLSNEEDKKSLHMVDAITLDKSTYTQPSAQFSLSPVKPLIADDEKFDHFIY DGNGGILYLKDREGVDLSAPSNEAMIYVGNGKKLQFKNVLIKNGQFLDSCISLGTNSG YSASKDDLVYIEGGNEGVQVDASRENAKDMAPQNAVVDRSAEFIIEFQAIGPELTFYN ASKNVVESPVLSNKLLHGQLDAYGRLVLKGDTVEMTVNALGLTMESNGIRILEPFDMS IKYSNASGKTNIHLAVSDIFMNFSFSILRLFLAVEEDILAFLRTASKEMTVVCSQFDR VGKIINSNNDQIYAFWRARAPVGFAVLGDYLTPLDKPPTKGVLAVNTNYVPVKRPVSF NRIWPPLDSGGISDVGEVKSNSLSNGMLGDGESSCSVWFPEAPEGYVALGCVVSPGKL RPSPSSTFCILASFVSPCSLRDCITITDTNLYPSSLAFWRVDNSLGTFLPAEPTTFSL LARAYELRHVMIGSSEVYPKASISSHIQASPSGHTHNQWSESSTVVNSGRRFEAVASF RLVWWNRGSSSRKQLSIWRPVVPQGMVYFGDIAVQGYEPPNTCIVLHDGGDEELFKSP LSFQLVGQIKKQRGIESISFWLPQAPPGYVALGCIAYKGPPKLQDFSALRCIRSDMVT GDQFLEESVWDTLDAKFGTEPFSIWAVANELGTFVVRGGSRKPPRRFALKLADPYLQS GSDDTVVDAEIGTFSAALFDDYGGLMVPLFNISLSGISFSLHGRPDYSNSTVSFSLAA RSYNDKYESWEPIVEPVDGFLRYQYDPNAPGAASQLRFTSTRDLNLNMSVSNVNMIIQ AYASWNNLSDVHQYYKRPEAFFSSYATRSIVDVHHKRSYYIIPQNKLGQDIFIQASET GGFSDIIRMPSGNMKPIKVPVSKNMLDSHLKGKICRKVRTMVAVIIADAMFPRVEGLT SPQYTVAVRLSPDNSLPSESLLHHQSARTCGCISSHFSSDIELVDWNEIFFFKVDSPI SYTVELIVTDMGKGDAIGFFSAPLNQIAMYVPDDSHKYDYNNSLMWMDLSLAASMNTT QADGSDKKSSGKLRCAIILSPKPNVDERNELFIGGRKSGFIQISPSMEGPWTTVRLNY AAPTACWRLGNDVVASEVSVKDGNRYVNIRSFVSVHNNTDFILDLCLVRKASSEMMEP PTDVSMPEGLQVDGRTQTDELFETEMYDPNIGWVGSNVQLNQDQTDGGGFQQATSGVE LPSGWEWIDDWHLDTSSTNTAAGWVYAPDFESLKWPESDDSLIFSNSVRQRKWIRNRK QISFDPKKEIFVGQLKPGDRVPLPLSALTQSGLFVFQLRPSNLDGSDKYSWSYVVGKP GRLEVSGKPNGISEIYVSALTESEELLCCTQLSEASSNASSHRLWFCLSIQATKISKD IRSDPIMDWSLVIKSPLSITNYLPLTAEYSILEMRASGHFIACSRGIFLPGRTVNIYN ADTCNPLFFSLLPQKGWLPICEAVLISHPREIPSKTISLRSSISGRIVHLIVEQNYEK EQTMMAKTIRVYAPYWFSVSRCPPLTYRLVNIGGKKQKRKIGFPLHSKMKNEGIIDEI TDEEMYSGHTIASALNFNFLGLSVSLSESSNEHFGPVKDLSPLGDMDGSVDLYAYNAD GKCMRLFISAKPCPYQSVPTKVITVRPYMTFTNRLGRDIYIKLSSEDEPKVLRASDSR ISFVHNENGGTDKLQVRLEDTEWSFPVQIVKEDTITLVLRRHDATRTFLKVEIRGYEE GSRFIVVFRLGSTKGPVRIENRTTIKTICIRQSGFGEDAWISLGPLSTTNFSWEDPYG QKFIDAKIDGDFNNRVLKVDLARAGQFSSGEELGMQLHVFETGNIKVVRFTDDQTWKV SSCEDAGPLTSAERPQINVTPVEIIIELGVVGVSVVDHMPKELFYLYLDRVFISYSTG YDGGTTSRFKLIMGHLQIDNQLPLTLMPVLLAPEQMSDIHHPVCKMTITMQNANTDGI QVYPYVYIRVTDKCWRLNIHEPIIWALVDFYNNLQLDHIPQSSSVTEVDPEIRVDLID VSEVRLKVSLETAPAQRPHGVLGVWSPILSAIGNAFKIQVHLRRVMRKDRFMRRSSIA SAVGNRIWRDLIHNPLHLLFSVDVLGMTSSTLASLSKGFAELSTDGQFLQLRSKQVTS RRITGVGDGIIQGTEALAQGVAFGVSGVVTKPVESARQNGLLGLAHGIGRAFVGFIVQ PVSGALDFFSLTVDGIGASCSKCLEVLNSKSTFQRIRNPRAIHADGVLREYSEREATG QMVLYLAEASRHFGCTEIFREPSKFAWSDYYEEHFIVPYQKIVLVTNKRVMLLQCSSL DKMDKKPCKIMWDVPWEELMALELAKAGYQLPSYLLLHLKNFRRSETFVRVIKCSVEE VEGIEPQAVKICSVVRKMWKAHPSDMNNIVPKVPSSQRYVHFAWSETDRKPLHASKKS IIKSGEPSSSSASDETKFVKHSINFLKIWSSERELKGRCALCRKQVADDGGVCSIWRP ICPDG" mRNA join(29748729..29748788,29749354..29749488, 29749595..29749645,29750224..29750318,29750407..29750524, 29751122..29751223,29751328..29751516,29751600..29751760, 29752096..29752266,29752997..29753089,29753187..29753511, 29753613..29753717,29753797..29753892,29754319..29754386, 29755040..29755160,29755242..29755448,29755547..29755750, 29755855..29755964,29756614..29756710,29756846..29756944, 29757449..29757604,29757687..29757761,29757843..29758328, 29758429..29758776,29758954..29759085,29759317..29759430, 29759512..29759696,29759843..29759951,29760518..29760661, 29760778..29761062,29761271..29761909,29762001..29762192, 29763216..29763319,29763707..29763996,29764130..29764214, 29764299..29764637,29764812..29765174,29765252..29765741, 29766116..29766279,29767154..29767316,29767461..29767730, 29768435..29768629,29768756..29768798,29769653..29769777, 29769917..29770429,29771158..29771934,29772061..29772134, 29772241..29772589,29772676..29772774,29772853..29773008, 29773316..29773497,29773600..29774091,29774540..29774717, 29774804..29774940,29775962..29776088,29776208..29776429, 29776501..29776860,29777963..29778121,29778211..29778492, 29778559..29778771,29778859..29778911,29780016..29780124, 29780333..29780957) /locus_tag="TCM_015810" /product="Pleckstrin (PH) domain-containing protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene10646" /inference="similar to AA sequence:ricco:29822.m003519" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc290t22; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc290t22" mRNA join(29748729..29748788,29749354..29749488, 29749595..29749645,29750224..29750318,29750407..29750524, 29751122..29751223,29751328..29751516,29751600..29751760, 29752096..29752266,29752997..29753089,29753187..29753511, 29753613..29753717,29753797..29753892,29754319..29754386, 29755040..29755160,29755242..29755448,29755547..29755750, 29755855..29755964,29756614..29756710,29756846..29756944, 29757449..29757604,29757687..29757761,29757843..29758328, 29758429..29758776,29758954..29759085,29759317..29759430, 29759512..29759696,29759843..29759951,29760518..29760661, 29760778..29761062,29761271..29761909,29762001..29762192, 29763216..29763319,29763707..29763996,29764130..29764214, 29764299..29764637,29764812..29765174,29765252..29765741, 29766116..29766279,29767154..29767316,29767461..29767730, 29768435..29768629,29768756..29768798,29769653..29769777, 29769917..29770429,29771158..29771934,29772061..29772134, 29772241..29772589,29772676..29772774,29772853..29773008, 29773316..29773497,29773600..29774091,29774540..29774717, 29774804..29774940,29775962..29776088,29776208..29776429, 29776501..29776860,29777963..29778121,29778211..29778492, 29778574..29778771,29778859..29778911,29780016..29780124, 29780333..29780957) /locus_tag="TCM_015810" /product="Pleckstrin (PH) domain-containing protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene10646" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013270001" /inference="similar to AA sequence:ricco:29822.m003519" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc290t13; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc290t22; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc460t11" CDS join(29749598..29749645,29750224..29750318, 29750407..29750524,29751122..29751223,29751328..29751516, 29751600..29751760,29752096..29752266,29752997..29753089, 29753187..29753511,29753613..29753717,29753797..29753892, 29754319..29754386,29755040..29755160,29755242..29755448, 29755547..29755750,29755855..29755964,29756614..29756710, 29756846..29756944,29757449..29757604,29757687..29757761, 29757843..29758328,29758429..29758776,29758954..29759085, 29759317..29759430,29759512..29759696,29759843..29759951, 29760518..29760661,29760778..29761062,29761271..29761909, 29762001..29762192,29763216..29763319,29763707..29763996, 29764130..29764214,29764299..29764637,29764812..29765174, 29765252..29765741,29766116..29766279,29767154..29767316, 29767461..29767730,29768435..29768629,29768756..29768798, 29769653..29769777,29769917..29770429,29771158..29771934, 29772061..29772134,29772241..29772589,29772676..29772774, 29772853..29773008,29773316..29773497,29773600..29774091, 29774540..29774717,29774804..29774940,29775962..29776088, 29776208..29776429,29776501..29776860,29777963..29778121, 29778211..29778492,29778559..29778771,29778859..29778911, 29780016..29780124,29780333..29780677) /locus_tag="TCM_015810" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29822.m003519" /codon_start=1 /product="Pleckstrin (PH) domain-containing protein isoform 1" /protein_id="EOY24125.1" /db_xref="TAIR:AT4G17140.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JNE2" /translation="MEMKLLERTHQLKSEMNKSWLGSLISTIIGNLKLSISNIHIRYE DLESNPGHPFAAGLTLEKLSAVTVDDSGKETFVTGGALDCIQKCVELDRLALYLDSDI LPWHIDKPWEDLLPSEWVQVFRFGTKYGRPADCPIKEHTYILQPVTGNAKYLKLRQNE SSDSGEPLQKAAVNLDDVTLCLSKDGYRDVLKLADNFTAFNQRLKYAHYRPTVSLKSD PRSWWKYAYKAVSDQMKKASGKLSWEQVLRYTRLRKKYISLYASLLKSDVNRPVVDDN KEIEELDRGLDIELILQWRMLAHKFVEQSIESENHLKKQKAKQSWWSFGWASQSLKDE SESFSFSEEDWERLNKIIGYKEGDEEQSLMINEKPDILQTSLEVHMKHNASKLLDGAH ACLAELSCEGLDCSIKLYPETKVFDLRLGSYQLSSPSGLLAESATSSDSLVGIFCYKP FDAKVDWSMVAKASPCYVTYLKDSLDEVIKFFESNTAVSQTIALETAAAVQMTIDGVK RSAQQQVNRALKDHARFLLDLDIAAPKITIPTEFRPDSKHSTKLLLDLGNLVIRSQDD YARASSEELDLYLQFDLVLSDVSAFLVDGDYHWSKTSLQKSAASAIIDGICLLPVIDK CRVILKLQQIRLENPSYPSTRLAVQLPSLGFHFSPARYHRLMQVFKIFQDEDNDRPDL LRPWNQADFEGWLSVLSRKGVGHREAVWQRRYLCLVGPFLYVLESPGSKSYKQYISLR GKQAYPVPAELVGDVESVLAVCGAARSNSKVVEDVNALILLCDSDDSRKAWQTRLQGA IYLASGSAPIISLSEASSDSETEPNDKHDTTDLAKIESIFITGVLDELKISFCYNHRH ERSFIKVLLAEEYPLFEFRAIGGQVELSIKGNDMFIGTVLKSLEIEDMICCNTVSRPC YLARSFIRSADAQSLLDDAEKQNLESKSPSEGDDKFYEAPESLVDPAECTTPTPRKAY EFGSLQKFLSSEKTSLTTLSFSRVSGLLPEDNLLLRREDIGLSDTLDSFVKAQIVIYD QNSPLYNNIDMQVTVTLATLSFFCRRPTILAIMEFANAVTIEDESCESFSDNSSAVGV KHDISSEDPADNQQSTSVEEPVVKGLLGKGKSRIIFNLKLNMAHAQILLMNENETKLA TLSQENLLTDIKVFPSSFSINAALGNLRISDDSLPSSHMYFWICDMRDPGGTSFVELE FTSFSIDDEDYEGYEYSLVGQLSEVRIVYLNRLVQEVISYFMGLVPKDSKDVVKFKDQ VTNSEKWFTTSEIEGSPALRLDLSLRKPIILMPRRTDSLDYLKLDIVHITVQSTFQWF SGSKSDLNAVHFEIMTILVEDINLNVGTESDLSESIIKDVKGVSIVIRRSLRDLMHQV PSIEAAIKIEELKAELSNKEYQIVTECAVSNISETPHIVPPLSSDFLTSSVDVVEPVI PQNVVGEPSTPNDETWTVMKVSFVVNLVELCLYVGEWDSPLATVQASGAWLLYKSNTL GEGFLSSSLKGFTVIDDRLGTEEEFRLAIGMPKNPLVSVSDTNSQLISKGNVTIEDGF KPFPTMLILDAKFSQFSTSVSVCVQRPQLLVALDFLLALVEFFVPTVGSMLSNEEDKK SLHMVDAITLDKSTYTQPSAQFSLSPVKPLIADDEKFDHFIYDGNGGILYLKDREGVD LSAPSNEAMIYVGNGKKLQFKNVLIKNGQFLDSCISLGTNSGYSASKDDLVYIEGGNE GVQVDASRENAKDMAPQNAVVDRSAEFIIEFQAIGPELTFYNASKNVVESPVLSNKLL HGQLDAYGRLVLKGDTVEMTVNALGLTMESNGIRILEPFDMSIKYSNASGKTNIHLAV SDIFMNFSFSILRLFLAVEEDILAFLRTASKEMTVVCSQFDRVGKIINSNNDQIYAFW RARAPVGFAVLGDYLTPLDKPPTKGVLAVNTNYVPVKRPVSFNRIWPPLDSGGISDVG EVKSNSLSNGMLGDGESSCSVWFPEAPEGYVALGCVVSPGKLRPSPSSTFCILASFVS PCSLRDCITITDTNLYPSSLAFWRVDNSLGTFLPAEPTTFSLLARAYELRHVMIGSSE VYPKASISSHIQASPSGHTHNQWSESSTVVNSGRRFEAVASFRLVWWNRGSSSRKQLS IWRPVVPQGMVYFGDIAVQGYEPPNTCIVLHDGGDEELFKSPLSFQLVGQIKKQRGIE SISFWLPQAPPGYVALGCIAYKGPPKLQDFSALRCIRSDMVTGDQFLEESVWDTLDAK FGTEPFSIWAVANELGTFVVRGGSRKPPRRFALKLADPYLQSGSDDTVVDAEIGTFSA ALFDDYGGLMVPLFNISLSGISFSLHGRPDYSNSTVSFSLAARSYNDKYESWEPIVEP VDGFLRYQYDPNAPGAASQLRFTSTRDLNLNMSVSNVNMIIQAYASWNNLSDVHQYYK RPEAFFSSYATRSIVDVHHKRSYYIIPQNKLGQDIFIQASETGGFSDIIRMPSGNMKP IKVPVSKNMLDSHLKGKICRKVRTMVAVIIADAMFPRVEGLTSPQYTVAVRLSPDNSL PSESLLHHQSARTCGCISSHFSSDIELVDWNEIFFFKVDSPISYTVELIVTDMGKGDA IGFFSAPLNQIAMYVPDDSHKYDYNNSLMWMDLSLAASMNTTQADGSDKKSSGKLRCA IILSPKPNVDERNELFIGGRKSGFIQISPSMEGPWTTVRLNYAAPTACWRLGNDVVAS EVSVKDGNRYVNIRSFVSVHNNTDFILDLCLVRKASSEMMEPPTDVSMPEGLQVDGRT QTDELFETEMYDPNIGWVGSNVQLNQDQTDGGGFQQATSGVELPSGWEWIDDWHLDTS STNTAAGWVYAPDFESLKWPESDDSLIFSNSVRQRKWIRNRKQISFDPKKEIFVGQLK PGDRVPLPLSALTQSGLFVFQLRPSNLDGSDKYSWSYVVGKPGRLEVSGKPNGISEIY VSALTESEELLCCTQLSEASSNASSHRLWFCLSIQATKISKDIRSDPIMDWSLVIKSP LSITNYLPLTAEYSILEMRASGHFIACSRGIFLPGRTVNIYNADTCNPLFFSLLPQKG WLPICEAVLISHPREIPSKTISLRSSISGRIVHLIVEQNYEKEQTMMAKTIRVYAPYW FSVSRCPPLTYRLVNIGGKKQKRKIGFPLHSKMKNEGIIDEITDEEMYSGHTIASALN FNFLGLSVSLSESSNEHFGPVKDLSPLGDMDGSVDLYAYNADGKCMRLFISAKPCPYQ SVPTKVITVRPYMTFTNRLGRDIYIKLSSEDEPKVLRASDSRISFVHNENGGTDKLQV RLEDTEWSFPVQIVKEDTITLVLRRHDATRTFLKVEIRGYEEGSRFIVVFRLGSTKGP VRIENRTTIKTICIRQSGFGEDAWISLGPLSTTNFSWEDPYGQKFIDAKIDGDFNNRV LKVDLARAGQFSSGEELGMQLHVFETGNIKVVRFTDDQTWKVSSCEDAGPLTSAERPQ INVTPVEIIIELGVVGVSVVDHMPKELFYLYLDRVFISYSTGYDGGTTSRFKLIMGHL QIDNQLPLTLMPVLLAPEQMSDIHHPVCKMTITMQNANTDGIQVYPYVYIRVTDKCWR LNIHEPIIWALVDFYNNLQLDHIPQSSSVTEVDPEIRVDLIDVSEVRLKVSLETAPAQ RPHGVLGVWSPILSAIGNAFKIQVHLRRVMRKDRFMRRSSIASAVGNRIWRDLIHNPL HLLFSVDVLGMTSSTLASLSKGFAELSTDGQFLQLRSKQVTSRRITGVGDGIIQGTEA LAQGVAFGVSGVVTKPVESARQNGLLGLAHGIGRAFVGFIVQPVSGALDFFSLTVDGI GASCSKCLEVLNSKSTFQRIRNPRAIHADGVLREYSEREATGQMVLYLAEASRHFGCT EIFREPSKFAWSDYYEEHFIVPYQKIVLVTNKRVMLLQCSSLDKMDKKPCKIMWDVPW EELMALELAKAGYQLPSYLLLHLKNFRRSETFVRVIKCSVEEVEGIEPQAVKICSVVR KMWKAHPSDMNNIVPKVPSSQRYVHFAWSETDRKPLHASKKSIIKSGEPSSSSASDET KFVKHSINFLKIWSSERELKGRCALCRKQVADDGGVCSIWRPICPDGYVSVGDIARIG SHPPNVAAVYRNIDNLFTFPVGYDLVWRNCPDDYTNLVSIWYPRAPEGYTAPGCVAVA GFAEPEADLVRCVAETLAEETTFEEQKVWSAPESYPWGCHIYQVQSDALHFVALRESK EESEWSATRVRDDLPLLQSSEAQ" CDS join(29749598..29749645,29750224..29750318, 29750407..29750524,29751122..29751223,29751328..29751516, 29751600..29751760,29752096..29752266,29752997..29753089, 29753187..29753511,29753613..29753717,29753797..29753892, 29754319..29754386,29755040..29755160,29755242..29755448, 29755547..29755750,29755855..29755964,29756614..29756710, 29756846..29756944,29757449..29757604,29757687..29757761, 29757843..29758328,29758429..29758776,29758954..29759085, 29759317..29759430,29759512..29759696,29759843..29759951, 29760518..29760661,29760778..29761062,29761271..29761909, 29762001..29762192,29763216..29763319,29763707..29763996, 29764130..29764214,29764299..29764637,29764812..29765174, 29765252..29765741,29766116..29766279,29767154..29767316, 29767461..29767730,29768435..29768629,29768756..29768798, 29769653..29769777,29769917..29770429,29771158..29771934, 29772061..29772134,29772241..29772589,29772676..29772774, 29772853..29773008,29773316..29773497,29773600..29774091, 29774540..29774717,29774804..29774940,29775962..29776088, 29776208..29776429,29776501..29776860,29777963..29778121, 29778211..29778492,29778574..29778771,29778859..29778911, 29780016..29780124,29780333..29780677) /locus_tag="TCM_015810" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29822.m003519" /codon_start=1 /product="Pleckstrin (PH) domain-containing protein isoform 4" /protein_id="EOY24128.1" /db_xref="TAIR:AT4G17140.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JNE2" /translation="MEMKLLERTHQLKSEMNKSWLGSLISTIIGNLKLSISNIHIRYE DLESNPGHPFAAGLTLEKLSAVTVDDSGKETFVTGGALDCIQKCVELDRLALYLDSDI LPWHIDKPWEDLLPSEWVQVFRFGTKYGRPADCPIKEHTYILQPVTGNAKYLKLRQNE SSDSGEPLQKAAVNLDDVTLCLSKDGYRDVLKLADNFTAFNQRLKYAHYRPTVSLKSD PRSWWKYAYKAVSDQMKKASGKLSWEQVLRYTRLRKKYISLYASLLKSDVNRPVVDDN KEIEELDRGLDIELILQWRMLAHKFVEQSIESENHLKKQKAKQSWWSFGWASQSLKDE SESFSFSEEDWERLNKIIGYKEGDEEQSLMINEKPDILQTSLEVHMKHNASKLLDGAH ACLAELSCEGLDCSIKLYPETKVFDLRLGSYQLSSPSGLLAESATSSDSLVGIFCYKP FDAKVDWSMVAKASPCYVTYLKDSLDEVIKFFESNTAVSQTIALETAAAVQMTIDGVK RSAQQQVNRALKDHARFLLDLDIAAPKITIPTEFRPDSKHSTKLLLDLGNLVIRSQDD YARASSEELDLYLQFDLVLSDVSAFLVDGDYHWSKTSLQKSAASAIIDGICLLPVIDK CRVILKLQQIRLENPSYPSTRLAVQLPSLGFHFSPARYHRLMQVFKIFQDEDNDRPDL LRPWNQADFEGWLSVLSRKGVGHREAVWQRRYLCLVGPFLYVLESPGSKSYKQYISLR GKQAYPVPAELVGDVESVLAVCGAARSNSKVVEDVNALILLCDSDDSRKAWQTRLQGA IYLASGSAPIISLSEASSDSETEPNDKHDTTDLAKIESIFITGVLDELKISFCYNHRH ERSFIKVLLAEEYPLFEFRAIGGQVELSIKGNDMFIGTVLKSLEIEDMICCNTVSRPC YLARSFIRSADAQSLLDDAEKQNLESKSPSEGDDKFYEAPESLVDPAECTTPTPRKAY EFGSLQKFLSSEKTSLTTLSFSRVSGLLPEDNLLLRREDIGLSDTLDSFVKAQIVIYD QNSPLYNNIDMQVTVTLATLSFFCRRPTILAIMEFANAVTIEDESCESFSDNSSAVGV KHDISSEDPADNQQSTSVEEPVVKGLLGKGKSRIIFNLKLNMAHAQILLMNENETKLA TLSQENLLTDIKVFPSSFSINAALGNLRISDDSLPSSHMYFWICDMRDPGGTSFVELE FTSFSIDDEDYEGYEYSLVGQLSEVRIVYLNRLVQEVISYFMGLVPKDSKDVVKFKDQ VTNSEKWFTTSEIEGSPALRLDLSLRKPIILMPRRTDSLDYLKLDIVHITVQSTFQWF SGSKSDLNAVHFEIMTILVEDINLNVGTESDLSESIIKDVKGVSIVIRRSLRDLMHQV PSIEAAIKIEELKAELSNKEYQIVTECAVSNISETPHIVPPLSSDFLTSSVDVVEPVI PQNVVGEPSTPNDETWTVMKVSFVVNLVELCLYVGEWDSPLATVQASGAWLLYKSNTL GEGFLSSSLKGFTVIDDRLGTEEEFRLAIGMPKNPLVSVSDTNSQLISKGNVTIEDGF KPFPTMLILDAKFSQFSTSVSVCVQRPQLLVALDFLLALVEFFVPTVGSMLSNEEDKK SLHMVDAITLDKSTYTQPSAQFSLSPVKPLIADDEKFDHFIYDGNGGILYLKDREGVD LSAPSNEAMIYVGNGKKLQFKNVLIKNGQFLDSCISLGTNSGYSASKDDLVYIEGGNE GVQVDASRENAKDMAPQNAVVDRSAEFIIEFQAIGPELTFYNASKNVVESPVLSNKLL HGQLDAYGRLVLKGDTVEMTVNALGLTMESNGIRILEPFDMSIKYSNASGKTNIHLAV SDIFMNFSFSILRLFLAVEEDILAFLRTASKEMTVVCSQFDRVGKIINSNNDQIYAFW RARAPVGFAVLGDYLTPLDKPPTKGVLAVNTNYVPVKRPVSFNRIWPPLDSGGISDVG EVKSNSLSNGMLGDGESSCSVWFPEAPEGYVALGCVVSPGKLRPSPSSTFCILASFVS PCSLRDCITITDTNLYPSSLAFWRVDNSLGTFLPAEPTTFSLLARAYELRHVMIGSSE VYPKASISSHIQASPSGHTHNQWSESSTVVNSGRRFEAVASFRLVWWNRGSSSRKQLS IWRPVVPQGMVYFGDIAVQGYEPPNTCIVLHDGGDEELFKSPLSFQLVGQIKKQRGIE SISFWLPQAPPGYVALGCIAYKGPPKLQDFSALRCIRSDMVTGDQFLEESVWDTLDAK FGTEPFSIWAVANELGTFVVRGGSRKPPRRFALKLADPYLQSGSDDTVVDAEIGTFSA ALFDDYGGLMVPLFNISLSGISFSLHGRPDYSNSTVSFSLAARSYNDKYESWEPIVEP VDGFLRYQYDPNAPGAASQLRFTSTRDLNLNMSVSNVNMIIQAYASWNNLSDVHQYYK RPEAFFSSYATRSIVDVHHKRSYYIIPQNKLGQDIFIQASETGGFSDIIRMPSGNMKP IKVPVSKNMLDSHLKGKICRKVRTMVAVIIADAMFPRVEGLTSPQYTVAVRLSPDNSL PSESLLHHQSARTCGCISSHFSSDIELVDWNEIFFFKVDSPISYTVELIVTDMGKGDA IGFFSAPLNQIAMYVPDDSHKYDYNNSLMWMDLSLAASMNTTQADGSDKKSSGKLRCA IILSPKPNVDERNELFIGGRKSGFIQISPSMEGPWTTVRLNYAAPTACWRLGNDVVAS EVSVKDGNRYVNIRSFVSVHNNTDFILDLCLVRKASSEMMEPPTDVSMPEGLQVDGRT QTDELFETEMYDPNIGWVGSNVQLNQDQTDGGGFQQATSGVELPSGWEWIDDWHLDTS STNTAAGWVYAPDFESLKWPESDDSLIFSNSVRQRKWIRNRKQISFDPKKEIFVGQLK PGDRVPLPLSALTQSGLFVFQLRPSNLDGSDKYSWSYVVGKPGRLEVSGKPNGISEIY VSALTESEELLCCTQLSEASSNASSHRLWFCLSIQATKISKDIRSDPIMDWSLVIKSP LSITNYLPLTAEYSILEMRASGHFIACSRGIFLPGRTVNIYNADTCNPLFFSLLPQKG WLPICEAVLISHPREIPSKTISLRSSISGRIVHLIVEQNYEKEQTMMAKTIRVYAPYW FSVSRCPPLTYRLVNIGGKKQKRKIGFPLHSKMKNEGIIDEITDEEMYSGHTIASALN FNFLGLSVSLSESSNEHFGPVKDLSPLGDMDGSVDLYAYNADGKCMRLFISAKPCPYQ SVPTKVITVRPYMTFTNRLGRDIYIKLSSEDEPKVLRASDSRISFVHNENGGTDKLQV RLEDTEWSFPVQIVKEDTITLVLRRHDATRTFLKVEIRGYEEGSRFIVVFRLGSTKGP VRIENRTTIKTICIRQSGFGEDAWISLGPLSTTNFSWEDPYGQKFIDAKIDGDFNNRV LKVDLARAGQFSSGEELGMQLHVFETGNIKVVRFTDDQTWKVSSCEDAGPLTSAERPQ INVTPVEIIIELGVVGVSVVDHMPKELFYLYLDRVFISYSTGYDGGTTSRFKLIMGHL QIDNQLPLTLMPVLLAPEQMSDIHHPVCKMTITMQNANTDGIQVYPYVYIRVTDKCWR LNIHEPIIWALVDFYNNLQLDHIPQSSSVTEVDPEIRVDLIDVSEVRLKVSLETAPAQ RPHGVLGVWSPILSAIGNAFKIQVHLRRVMRKDRFMRRSSIASAVGNRIWRDLIHNPL HLLFSVDVLGMTSSTLASLSKGFAELSTDGQFLQLRSKQVTSRRITGVGDGIIQGTEA LAQGVAFGVSGVVTKPVESARQNGLLGLAHGIGRAFVGFIVQPVSGALDFFSLTVDGI GASCSKCLEVLNSKSTFQRIRNPRAIHADGVLREYSEREATGQMVLYLAEASRHFGCT EIFREPSKFAWSDYYEEHFIVPYQKIVLVTNKRVMLLQCSSLDKMDKKPCKIMWDVPW EELMALELAKAGYQLPSYLLLHLKNFRRSETFVRVIKCSVEEVEGIEPQAVKICSVVR KMWKAHPSDMNNIVPKRYVHFAWSETDRKPLHASKKSIIKSGEPSSSSASDETKFVKH SINFLKIWSSERELKGRCALCRKQVADDGGVCSIWRPICPDGYVSVGDIARIGSHPPN VAAVYRNIDNLFTFPVGYDLVWRNCPDDYTNLVSIWYPRAPEGYTAPGCVAVAGFAEP EADLVRCVAETLAEETTFEEQKVWSAPESYPWGCHIYQVQSDALHFVALRESKEESEW SATRVRDDLPLLQSSEAQ" mobile_element complement(29756988..29757107) /note="source:scaffold_9_CACTA_0932 9101 9228" /mobile_element_type="transposon:TIR/CACTA" gene 29781152..29784712 /locus_tag="TCM_015811" /note="dbxref CacaoGD:Thecc1EG015811" mRNA join(29781152..29781735,29781815..29781883, 29782001..29782069,29782388..29782462,29782550..29782618, 29782784..29783392,29783745..29783816,29784159..29784712) /locus_tag="TCM_015811" /product="Placental protein 11 precursor" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013271001" /inference="similar to AA sequence:Phytozome:GSVIVT01013271001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9248t3" CDS join(29781613..29781735,29781815..29781883, 29782001..29782069,29782388..29782462,29782550..29782618, 29782784..29783392,29783745..29783816,29784159..29784392) /locus_tag="TCM_015811" /codon_start=1 /product="Placental protein 11 precursor" /protein_id="EOY24129.1" /db_xref="Phytozome:GSVIVT01013271001" /db_xref="TAIR:AT4G17100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JNE1" /translation="MEGLIRGLIDVAIGGGGGGGGGGRDEENETRDERSRSSWAQVVS GEQDNDDCPQGHNPTQWRRQEESQREDERWEVSGSRPSRKPHKVEYGGYEKDEAGERH GYDQNEWNRKEQEKENNDGWETVGRKPQRQPHKVQMDQWQGYKRPPSEQVYSDEFETG TSIEPSEEELADLSQACNRLWQLDLNRLEPGKDYQIDCGEGKKVYQKADMAEGSLFYW LSEDIFRRPTFSRFCSLLDNYNPNAGCKEVVTSEEKQEQSAFMEEISRTAPIKYLHKY LSLKGIVSENYQDFKRMITKLWFDLYGRGGASGSSSAFEHVFVGEIKQHGEQEVTGFH NWLQFYLEEAKGRVDYQGYILPRRRGETPDSETQLLTIQFEWNGILKSVSSTLVGVSP EFEIALYTLCFFMGGEDNYVQLGPYSVNIKCYRFGDKMGSVFPIAEC" gene 29787664..29795160 /locus_tag="TCM_015812" /note="dbxref CacaoGD:Thecc1EG015812" mRNA join(29787664..29787993,29788927..29789600, 29789724..29789934,29790922..29791032,29791196..29792283) /locus_tag="TCM_015812" /product="Chloroplast beta-amylase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29822.m003517" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021054t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03330.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1487t6" mRNA join(29788962..29789600,29789724..29789934, 29790922..29791032,29791196..29791997,29795130..29795160) /locus_tag="TCM_015812" /product="Chloroplast beta-amylase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29822.m003517" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021054t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03330.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1487t2; alternateUTRof:Thecc1EG015812t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1487t6" mRNA join(29788962..29789600,29789724..29789934, 29790922..29791032,29791196..29791997,29793062..29793091) /locus_tag="TCM_015812" /product="Chloroplast beta-amylase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29822.m003517" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021054t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03330.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1487t1; alternateUTRof:Thecc1EG015812t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1487t6" mRNA join(29788962..29789600,29789724..29789934, 29790922..29791032,29791196..29791523,29791644..29792295) /locus_tag="TCM_015812" /product="Chloroplast beta-amylase isoform 3" /inference="alignment:exonerate- protein:2:ricco:29822.m003517" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021054t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03330.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1487t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1487t6" mRNA join(29788962..29789600,29789724..29789934, 29790922..29791032,29791196..29791523,29791623..>29791652) /locus_tag="TCM_015812" /product="Chloroplast beta-amylase isoform 4" /inference="alignment:exonerate- protein:2:ricco:29822.m003517" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021054t1" /inference="similar to AA sequence:ricco:29822.m003517" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1487t4; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1487t6" CDS join(29788981..29789600,29789724..29789934, 29790922..29791032,29791196..29791981) /locus_tag="TCM_015812" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021054t1" /codon_start=1 /product="Chloroplast beta-amylase isoform 1" /protein_id="EOY24130.1" /db_xref="Phytozome:POPTR_0003s03330.1" /db_xref="TAIR:AT4G17090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23553" /translation="MNANHFTSSHILRSLPSSFPKPANRNMTLTLRSSTSFFNLKETK SLTKTPDDFLGTICFAQTKPSCRLRAKNSMSMQDAQLSSHGKVSIGEGRNSENREKLH GLTISHNENDSRVPVFVMLPLDTITLGGNLNKQRAMNASLMALKSAGVEGVMVDAWWG LVEKDGPLKYNWEGYAELVQMVEKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEI SKNPDLVYTERSGRRNPEYISLGCDSIPVLRGRTPIQAYTDYMRSFRERFRDYLGRVI VEIQVGMGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLEAAAEAIGKKDWGK GGPHDSGHYKQFPEETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAAKGIFHG TGAILSGKIAGIHWHYRTRSHAAELTAGYYNTRHRDGYLPIAQMLSKHGVVFNFTCME MRDGEQPDQANCSPEGLVRQVKMATRTAGGELAGENALERYDAGAYSQVLATSRSDSG NGLSAFTYLRMNKRLFEGGNWRHLVEFVKNMSEGGRKISECDSRGTNLYIGFIREKNV EKMKEAAPV" CDS join(29788981..29789600,29789724..29789934, 29790922..29791032,29791196..29791981) /locus_tag="TCM_015812" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021054t1" /codon_start=1 /product="Chloroplast beta-amylase isoform 1" /protein_id="EOY24131.1" /db_xref="Phytozome:POPTR_0003s03330.1" /db_xref="TAIR:AT4G17090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23553" /translation="MNANHFTSSHILRSLPSSFPKPANRNMTLTLRSSTSFFNLKETK SLTKTPDDFLGTICFAQTKPSCRLRAKNSMSMQDAQLSSHGKVSIGEGRNSENREKLH GLTISHNENDSRVPVFVMLPLDTITLGGNLNKQRAMNASLMALKSAGVEGVMVDAWWG LVEKDGPLKYNWEGYAELVQMVEKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEI SKNPDLVYTERSGRRNPEYISLGCDSIPVLRGRTPIQAYTDYMRSFRERFRDYLGRVI VEIQVGMGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLEAAAEAIGKKDWGK GGPHDSGHYKQFPEETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAAKGIFHG TGAILSGKIAGIHWHYRTRSHAAELTAGYYNTRHRDGYLPIAQMLSKHGVVFNFTCME MRDGEQPDQANCSPEGLVRQVKMATRTAGGELAGENALERYDAGAYSQVLATSRSDSG NGLSAFTYLRMNKRLFEGGNWRHLVEFVKNMSEGGRKISECDSRGTNLYIGFIREKNV EKMKEAAPV" CDS join(29788981..29789600,29789724..29789934, 29790922..29791032,29791196..29791981) /locus_tag="TCM_015812" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG021054t1" /codon_start=1 /product="Chloroplast beta-amylase isoform 1" /protein_id="EOY24134.1" /db_xref="Phytozome:POPTR_0003s03330.1" /db_xref="TAIR:AT4G17090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23553" /translation="MNANHFTSSHILRSLPSSFPKPANRNMTLTLRSSTSFFNLKETK SLTKTPDDFLGTICFAQTKPSCRLRAKNSMSMQDAQLSSHGKVSIGEGRNSENREKLH GLTISHNENDSRVPVFVMLPLDTITLGGNLNKQRAMNASLMALKSAGVEGVMVDAWWG LVEKDGPLKYNWEGYAELVQMVEKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEI SKNPDLVYTERSGRRNPEYISLGCDSIPVLRGRTPIQAYTDYMRSFRERFRDYLGRVI VEIQVGMGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLEAAAEAIGKKDWGK GGPHDSGHYKQFPEETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAAKGIFHG TGAILSGKIAGIHWHYRTRSHAAELTAGYYNTRHRDGYLPIAQMLSKHGVVFNFTCME MRDGEQPDQANCSPEGLVRQVKMATRTAGGELAGENALERYDAGAYSQVLATSRSDSG NGLSAFTYLRMNKRLFEGGNWRHLVEFVKNMSEGGRKISECDSRGTNLYIGFIREKNV EKMKEAAPV" CDS join(29788981..29789600,29789724..29789934, 29790922..29791032,29791196..29791523,29791644..29791981) /locus_tag="TCM_015812" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021054t1" /codon_start=1 /product="Chloroplast beta-amylase isoform 3" /protein_id="EOY24132.1" /db_xref="Phytozome:POPTR_0003s03330.1" /db_xref="TAIR:AT4G17090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23553" /translation="MNANHFTSSHILRSLPSSFPKPANRNMTLTLRSSTSFFNLKETK SLTKTPDDFLGTICFAQTKPSCRLRAKNSMSMQDAQLSSHGKVSIGEGRNSENREKLH GLTISHNENDSRVPVFVMLPLDTITLGGNLNKQRAMNASLMALKSAGVEGVMVDAWWG LVEKDGPLKYNWEGYAELVQMVEKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEI SKNPDLVYTERSGRRNPEYISLGCDSIPVLRGRTPIQAYTDYMRSFRERFRDYLGRVI VEIQVGMGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLEAAAEAIGKKDWGK GGPHDSGHYKQFPEETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAAKGIFHG TGAILSGKIAGIHWHYRTRSHAAELTAGYYNTEGLVRQVKMATRTAGGELAGENALER YDAGAYSQVLATSRSDSGNGLSAFTYLRMNKRLFEGGNWRHLVEFVKNMSEGGRKISE CDSRGTNLYIGFIREKNVEKMKEAAPV" CDS join(29788981..29789600,29789724..29789934, 29790922..29791032,29791196..29791523,29791623..>29791651) /locus_tag="TCM_015812" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29822.m003517; paralog of Thecc1EG021054t1" /codon_start=1 /product="Chloroplast beta-amylase isoform 4" /protein_id="EOY24133.1" /db_xref="TAIR:AT4G17090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23553" /translation="MNANHFTSSHILRSLPSSFPKPANRNMTLTLRSSTSFFNLKETK SLTKTPDDFLGTICFAQTKPSCRLRAKNSMSMQDAQLSSHGKVSIGEGRNSENREKLH GLTISHNENDSRVPVFVMLPLDTITLGGNLNKQRAMNASLMALKSAGVEGVMVDAWWG LVEKDGPLKYNWEGYAELVQMVEKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEI SKNPDLVYTERSGRRNPEYISLGCDSIPVLRGRTPIQAYTDYMRSFRERFRDYLGRVI VEIQVGMGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLEAAAEAIGKKDWGK GGPHDSGHYKQFPEETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAAKGIFHG TGAILSGKIAGIHWHYRTRSHAAELTAGYYNTDQANCSPEG" mobile_element complement(29792308..29792354) /note="source:CACAO_M_S_E98417_F15_scaffold_8 1196 1240" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29792826..29795529) /locus_tag="TCM_015813" /note="dbxref CacaoGD:Thecc1EG015813" mRNA complement(join(29792826..29793163,29795131..29795248, 29795355..29795529)) /locus_tag="TCM_015813" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g16063t00001" CDS complement(join(29795196..29795248,29795355..29795508)) /locus_tag="TCM_015813" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24135.1" /translation="MYCLKVKMFKPLIKTQNHSVSVIGKSTKKWEKRSLSFKRLPPPL PSPPFLTGMDSCLAESLLVKNWAT" gene complement(29796017..29800255) /locus_tag="TCM_015814" /note="dbxref CacaoGD:Thecc1EG015814" mRNA complement(join(29796017..29796411,29796503..29796931, 29797380..29797502,29799513..29800255)) /locus_tag="TCM_015814" /product="Receptor protein kinase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08340.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005787t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s03310.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b015284t1a4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9177t3" mRNA complement(join(29796017..29796411,29796503..29796931, 29797380..29797502,29797970..29798227,29799513..29800255)) /locus_tag="TCM_015814" /product="Receptor protein kinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08340.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005787t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s03310.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9177t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9177t3" CDS complement(join(29796406..29796411,29796503..29796931, 29797380..29797502,29799513..29799860)) /locus_tag="TCM_015814" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005787t2" /codon_start=1 /product="Receptor protein kinase isoform 2" /protein_id="EOY24137.1" /db_xref="Phytozome:POPTR_0003s03310.1" /db_xref="TAIR:AT5G47070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTC0" /translation="MKCFSIFKDKSKSKKRKSSSTPELRNQSKSDNSALTRTSRSLPS PRSIPELYKENEHNLRVFSFQELRDATNGFNRMLKIGEGGFGSVYKGTIKPLDGRGEP IVVAIKKLNAHSLQVIYRDFKSSNVLLDENFKPKLSDFGLAREGPTGDRTHVSTAVVG TYGYAAPEYVETGHLTIQSDIWTFGVVLYEVLTGRRTVERNRPTLEQKLLDWVKQFPP DSKRFSMIIDPRLRNNYSPSAARKVGKLADSCLNKNAKERPTMSQVVESLKQAIQDSD EGSSSVSKSPLTSSSRNGGRRSEKV" CDS complement(join(29796406..29796411,29796503..29796931, 29797380..29797502,29797970..29798227,29799513..29799860)) /locus_tag="TCM_015814" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005787t2" /codon_start=1 /product="Receptor protein kinase isoform 1" /protein_id="EOY24136.1" /db_xref="Phytozome:POPTR_0003s03310.1" /db_xref="TAIR:AT5G47070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTC0" /translation="MKCFSIFKDKSKSKKRKSSSTPELRNQSKSDNSALTRTSRSLPS PRSIPELYKENEHNLRVFSFQELRDATNGFNRMLKIGEGGFGSVYKGTIKPLDGRGEP IVVAIKKLNAHSLQGHKEWLAEVQFLGVVNHPNLVKLIGYCSVDGERGIQRLLVYEFM PNRSLEHHLFSTTSTLPWKTRLEIMLGAAEGLTYLHEGLEVKVIYRDFKSSNVLLDEN FKPKLSDFGLAREGPTGDRTHVSTAVVGTYGYAAPEYVETGHLTIQSDIWTFGVVLYE VLTGRRTVERNRPTLEQKLLDWVKQFPPDSKRFSMIIDPRLRNNYSPSAARKVGKLAD SCLNKNAKERPTMSQVVESLKQAIQDSDEGSSSVSKSPLTSSSRNGGRRSEKV" mobile_element complement(29801103..29801337) /note="source:scaffold_4_CACTA_0482 6077 6321" /mobile_element_type="transposon:TIR/CACTA" gene complement(29804761..29809567) /locus_tag="TCM_015815" /note="dbxref CacaoGD:Thecc1EG015815" mRNA complement(join(29804761..29805100,29805479..29806140, 29806329..29806403,29806497..29806589,29806740..29806796, 29807071..29807150,29807722..29807813,29808198..29808235, 29808355..29808448,29808717..29808809,29809058..29809567)) /locus_tag="TCM_015815" /product="Plant snare 11" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021488t1" /inference="similar to AA sequence:ricco:29822.m003513" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11475t00001" CDS complement(join(29806042..29806140,29806329..29806403, 29806497..29806589,29806740..29806796,29807071..29807150, 29807722..29807813,29808198..29808235,29808355..29808448, 29808717..29808809,29809058..29809134)) /locus_tag="TCM_015815" /note="dbxref ricco:29822.m003513; paralog of Thecc1EG021488t1" /codon_start=1 /product="Plant snare 11" /protein_id="EOY24138.1" /db_xref="TAIR:AT2G35190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LRP1" /translation="MDPLAAVSEELAEIDGQIADIFRALSNGFQKLEKVKDVNRQSRQ LEELTDKMRECKRLIKEFDREVKEMESRIDPNTNRMLNEKKQSMIKELNSYVALKKQH QSNLENNKRVDLFDGPNEGFGEENVLLASSMTNQQLMDRGNQMMDETDQAIDRAKKVV QDTVDVGTETAAALKAQTEQMGRIVNELDSIHFSIKKASKLVKEIGRQVATDKCIMAL LFLIVAGVIAIIIVKLVNPNNKDIRDIPGLAPPAMNRRLLWTPNRRL" gene 29810132..29812255 /locus_tag="TCM_015816" /note="dbxref CacaoGD:Thecc1EG015816" mRNA join(29810132..29810208,29810792..29810831, 29811108..29811196,29811325..29811407,29811500..29812255) /locus_tag="TCM_015816" /product="Zinc-binding ribosomal protein family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03280.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005784t1" /inference="similar to AA sequence:frave:gene10658" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g11200t00001" CDS join(29810206..29810208,29810792..29810831, 29811108..29811196,29811325..29811407,29811500..29811563) /locus_tag="TCM_015816" /note="dbxref frave:gene10658; paralog of Thecc1EG005784t1" /codon_start=1 /product="Zinc-binding ribosomal protein family protein" /protein_id="EOY24139.1" /db_xref="TAIR:AT3G10950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXU5" /translation="MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES" gene complement(29811998..29815612) /locus_tag="TCM_015818" /note="dbxref CacaoGD:Thecc1EG015818" mRNA complement(join(29811998..29812741,29812988..29813246, 29814154..29815612)) /locus_tag="TCM_015818" /product="Histone H3 K4-specific methyltransferase SET7/9 family protein" /inference="alignment:exonerate-protein:2:frave:gene10659" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005783t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08310.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12329t2" CDS complement(join(29812565..29812741,29812988..29813246, 29814154..29815346)) /locus_tag="TCM_015818" /note="paralog of Thecc1EG005783t1" /codon_start=1 /product="Histone H3 K4-specific methyltransferase SET7/9 family protein" /protein_id="EOY24140.1" /db_xref="Phytozome:POPTR_0003s08310.1" /db_xref="TAIR:AT4G17080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7W4" /translation="MHQKKSGKQQEIGKVSSSCISSDFNQTIYPHLFHSQFNQNYLES TPQKGPDFSIPNKPHLTIQIPPTSPNPSPPPTATTHHQKNPNFHHHEPSFSSNLSPTH ALLSTPHKRPIMTQTSLSHSPTLSSFKNHHNDRKRVEKLASNSSLFQSFSCSAYFAIP FDTQQLGRKLVHHLNRGRLLCFHLRFLVLLSLPSLYFLVSNPRRFFVLNLLALIAFSL TLVVSLNLALPRLPSIRLLLARSLPAKFSQLGSSSKSSKAVVWSIGSKPKSEKKANSG TWVQAYSNGDVYEGEFHKGKCSGSGVYYYYMKGRFEGDWIDGKYDGYGVETWAKGSRF RGQYRQGLRHGIGVYRFYTGDIYAGEWSNGQCHGCGVHTCEDGSKYVGEFKWGVKHGL GHYYFRNGDIYSGEYFADKMHGFGVYQFGNGHRYEGAWHEGRRQGFGTYTFRNGETQS GHWQNGVLDVHSAQNTHLGSPYAVTQSRVLNAVQEARRAAEKAYDIAKIDERVNRAVS AANKAANAARVVAVKAVQKRMHHSNGDDPPTAIV" gene complement(29819134..29820011) /locus_tag="TCM_015819" /note="dbxref CacaoGD:Thecc1EG015819" mRNA complement(29819134..29820011) /locus_tag="TCM_015819" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.62 coverage" CDS complement(29819534..29819740) /locus_tag="TCM_015819" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24141.1" /translation="MLCKGQTKAHMSFVSTYGWIWSPTLPKPMSRNELGFVVICDDSL MQPMIATHCLRARTKRVEPLYKGM" gene complement(29820495..29824135) /locus_tag="TCM_015820" /note="dbxref CacaoGD:Thecc1EG015820" mRNA complement(join(29820495..29821043,29821731..29821896, 29822017..29822111,29822482..29822700,29823412..29824135)) /locus_tag="TCM_015820" /product="Casein kinase II beta chain 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g41230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005782t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400003102" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:PASA:2:TSA:puevd3b015289t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g03574t00001" mRNA complement(join(29820503..29821043,29821734..29821896, 29822017..29822126,29822482..29822700,29823412..29823700)) /locus_tag="TCM_015820" /product="Casein kinase II beta chain 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g41230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005782t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400003102" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc734t38; inference alignment:Newbler:10:TSA:cgbaP1_g03574t00001" mRNA complement(join(29820568..29821043,29821731..29821896, 29822017..29822126,29822482..29822700,29823412..29823689)) /locus_tag="TCM_015820" /product="Casein kinase II beta chain 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g41230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005782t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400003102" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03574t00001; inference alignment:Newbler:10:TSA:cgbaP1_g03574t00001" CDS complement(join(29820913..29821043,29821731..29821896, 29822017..29822111,29822482..29822700,29823412..29823643)) /locus_tag="TCM_015820" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005782t1" /codon_start=1 /product="Casein kinase II beta chain 1 isoform 3" /protein_id="EOY24144.1" /db_xref="Phytozome:PGSC0003DMP400003102" /db_xref="TAIR:AT5G47080.4" /db_xref="UniProtKB/TrEMBL:UniRef50_P40228" /translation="MYRGERAAGGSKGEVGSVDRKRINEALDKQLERSSPSTSRAING KDKSAHSLLMGKHPPDHHRDSRSVSLPKAKASDDESETDSEESDVSGSDGDDTSWISW FCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHEEQNELVESA AEMLYGLIHSRYILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTV KIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPLKASQSYVPRVFGFK IHKP" CDS complement(join(29820913..29821043,29821734..29821896, 29822017..29822126,29822482..29822700,29823412..29823643)) /locus_tag="TCM_015820" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005782t1" /codon_start=1 /product="Casein kinase II beta chain 1 isoform 2" /protein_id="EOY24143.1" /db_xref="Phytozome:PGSC0003DMP400003102" /db_xref="TAIR:AT5G47080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P40228" /translation="MYRGERAAGGSKGEVGSVDRKRINEALDKQLERSSPSTSRAING KDKSAHSLLMGKHPPDHHRDSRSVSLPKAKASDDESETDSEESDVSGSDGDDTSWISW FCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNE LVESAAEMLYGLIHSRYILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIP RSSTVKIYCPRCEDIYYPRSKYQDIDGAYFGTTFPHLFLMTYGHLKPLKASQSYVPRV FGFKIHKP" CDS complement(join(29820913..29821043,29821731..29821896, 29822017..29822126,29822482..29822700,29823412..29823643)) /locus_tag="TCM_015820" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005782t1" /codon_start=1 /product="Casein kinase II beta chain 1 isoform 1" /protein_id="EOY24142.1" /db_xref="Phytozome:PGSC0003DMP400003102" /db_xref="TAIR:AT5G47080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P40228" /translation="MYRGERAAGGSKGEVGSVDRKRINEALDKQLERSSPSTSRAING KDKSAHSLLMGKHPPDHHRDSRSVSLPKAKASDDESETDSEESDVSGSDGDDTSWISW FCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNE LVESAAEMLYGLIHSRYILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIP RSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPLKASQSYVPR VFGFKIHKP" gene complement(29825767..29828169) /locus_tag="TCM_015821" /note="dbxref CacaoGD:Thecc1EG015821" mRNA complement(join(29825767..29826651,29827097..29827647, 29827743..29827991)) /locus_tag="TCM_015821" /product="Coiled-coil domain-containing protein 97 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene10662" /inference="similar to AA sequence:Phytozome:POPTR_0003s03230.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09309t00001" mRNA complement(join(29825989..29826651,29827097..29827647, 29827743..29828169)) /locus_tag="TCM_015821" /product="Coiled-coil domain-containing protein 97 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene10662" /inference="similar to AA sequence:Phytozome:POPTR_0003s03230.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1372t1_C2; alternateUTRof:Thecc1EG015821t1; inference alignment:Newbler:10:TSA:cgbaB_g09309t00001; inference alignment:Newbler:10:TSA:cgbaP2_g17633t00001" CDS complement(join(29826397..29826651,29827097..29827647, 29827743..29827908)) /locus_tag="TCM_015821" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Coiled-coil domain-containing protein 97 isoform 1" /protein_id="EOY24145.1" /db_xref="Phytozome:POPTR_0003s03230.1" /db_xref="TAIR:AT5G47090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTB9" /translation="MERKVRIEAIESITERLSCLENLYFPRALQSSASDPSHRKSILH DLLSRDVPVFLERYGSELTSDELLEFDALNDDYEVNWHLKHLRSKMSPSSEELKSRSV TVKNRRRAYLNKLICDGQYFSEDAMREREPYLHHEYLGKFQDLSGRSMAKPGERWSET LMRRCEEARLVAKIREEQQRLGVAQKDWVGNETNQQEEEEEEEEEEEEEEEEEEEEEE EEEEEDENEMKKENGGEHGNEMLLDHPGNDRGATSATMGEDEEAPSAEEMQDRMDQFT YIMQQKFLSGEDREHLDYTKIDDDETLDDHWLREANHDAEEKYFAED" CDS complement(join(29826397..29826651,29827097..29827647, 29827743..29827908)) /locus_tag="TCM_015821" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Coiled-coil domain-containing protein 97 isoform 1" /protein_id="EOY24146.1" /db_xref="Phytozome:POPTR_0003s03230.1" /db_xref="TAIR:AT5G47090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTB9" /translation="MERKVRIEAIESITERLSCLENLYFPRALQSSASDPSHRKSILH DLLSRDVPVFLERYGSELTSDELLEFDALNDDYEVNWHLKHLRSKMSPSSEELKSRSV TVKNRRRAYLNKLICDGQYFSEDAMREREPYLHHEYLGKFQDLSGRSMAKPGERWSET LMRRCEEARLVAKIREEQQRLGVAQKDWVGNETNQQEEEEEEEEEEEEEEEEEEEEEE EEEEEDENEMKKENGGEHGNEMLLDHPGNDRGATSATMGEDEEAPSAEEMQDRMDQFT YIMQQKFLSGEDREHLDYTKIDDDETLDDHWLREANHDAEEKYFAED" gene complement(29828090..29848879) /locus_tag="TCM_015822" /note="dbxref CacaoGD:Thecc1EG015822" mRNA complement(join(29828090..29828621,29828833..29828896, 29829233..29829317,29829572..29829618,29829849..29829902, 29830018..29830234,29830718..29830842,29831330..29831353, 29831445..29831524,29831627..29831705,29831810..29831875, 29832296..29832528,29832955..29833367,29848675..29848879)) /locus_tag="TCM_015822" /product="Glycine-rich protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30024.m001724" /inference="similar to AA sequence:ricco:30024.m001724" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9747t3" CDS complement(join(29828518..29828621,29828833..29828896, 29829233..29829317,29829572..29829618,29829849..29829902, 29830018..29830234,29830718..29830842,29831330..29831353, 29831445..29831524,29831627..29831705,29831810..29831875, 29832296..29832528,29832955..29833333)) /locus_tag="TCM_015822" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30024.m001724" /codon_start=1 /product="Glycine-rich protein isoform 1" /protein_id="EOY24147.1" /db_xref="TAIR:AT4G17620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY73" /translation="MDFSEQDVDVFAEDYNNNDSNNHDDSHESSSSHSSSSSSSASSS SSASSSPNGSGGGESSSASGSASSGEEETGEEVGNVNANNYDCNNNSEEGIYGDEEED ERDLFGSDNEDYCKTPATSPFSIPVLPVIRNPNNPGRGGFGRGRWQNDRGAGILGRPG YPPRQGYGYGSKFANGRHDERFVSELKLSKSEETLSRKCIAFQEPCELACYSRVEGGD VYFDDRSLRLFKRLITEDIGADLNQGFNTFIEKKDLGSEGFGDLLACIRDKNIPLQNI HFVTFRNNLNKIMATAYIRNEPWEMGVHKRNGVVYLDVHKLPERPRSELDRQRCYWGY CFESLATEDPRRADGEEIHHIDANAEYCSVIKTKLGAHRILMGAEMDCCDSTDEGRRF YVELKTSRELDYHTEERYEREKLLKFWIQSFLAGVPYIVIGFRDDAGRLVRTERLRTK DITHRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYVLQFAPPFSRLELLQAQFCP DAITNHVEQL" mRNA complement(join(29828634..29828896,29829233..29829317, 29829572..29829618,29829849..29829902,29830018..29830234, 29830718..29830842,29831810..29831875,29832296..29832528, 29832955..29833596)) /locus_tag="TCM_015822" /product="Glycine-rich protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30024.m001724" /inference="similar to AA sequence:ricco:30024.m001724" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc695t14; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9747t3" CDS complement(join(29828792..29828896,29829233..29829317, 29829572..29829618,29829849..29829902,29830018..29830234, 29830718..29830842,29831810..29831875,29832296..29832528, 29832955..29833333)) /locus_tag="TCM_015822" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30024.m001724" /codon_start=1 /product="Glycine-rich protein isoform 2" /protein_id="EOY24148.1" /db_xref="TAIR:AT4G17620.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY73" /translation="MDFSEQDVDVFAEDYNNNDSNNHDDSHESSSSHSSSSSSSASSS SSASSSPNGSGGGESSSASGSASSGEEETGEEVGNVNANNYDCNNNSEEGIYGDEEED ERDLFGSDNEDYCKTPATSPFSIPVLPVIRNPNNPGRGGFGRGRWQNDRGAGILGRPG YPPRQGYGYGSKFANGRHDERFVSELKLSKSEETLSRKCIAFQEPCELACYSRVEGGD VYFDDRSLIMATAYIRNEPWEMGVHKRNGVVYLDVHKLPERPRSELDRQRCYWGYCFE SLATEDPRRADGEEIHHIDANAEYCSVIKTKLGAHRILMGAEMDCCDSTDEGRRFYVE LKTSRELDYHTEERYEREKLLKFWIQSFLAGVPYIVIGFRDDAGRLVRTERLRTKDIT HRVKMKNYWQGGVCLAFADEVLCWLYGTVKESKILTLISPSTSA" mobile_element 29831079..29831129 /note="source:scaffold_5_CACTA_0596 1729 1780" /mobile_element_type="transposon:TIR/CACTA" gene 29833656..29847435 /locus_tag="TCM_015823" /note="dbxref CacaoGD:Thecc1EG015823" mRNA join(29833656..29833833,29834476..29834639, 29836328..29836352,29837158..29837327,29839155..29839512, 29847374..29847435) /locus_tag="TCM_015823" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" CDS join(29833823..29833833,29834476..29834639, 29836328..29836352,29837158..29837327,29839155..29839279) /locus_tag="TCM_015823" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24149.1" /translation="MAQDCHILELNYWGRNLIGVFFIAGDHDDEITGNRSKSACKPVE KACKESKYLGVPRIYCTWSRDFRIINLFENNYERNDDTYPSSGAMSSSCDVGSGKFPS SFGQRIGKPRHMIKTQPPLLRFSSSPPLLALPLALLVSPPSLPLGEEEAEDDDEAEDD DEDQ" mobile_element complement(29834292..29834355) /note="source:CACAO_Mariner_E220_scaffold_9 11435 11505" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(29836728..29836896) /note="source:scaffold_7_CACTA_0795 2901 3031" /mobile_element_type="transposon:TIR/CACTA" gene complement(29838876..29841130) /locus_tag="TCM_015824" /note="dbxref CacaoGD:Thecc1EG015824" mRNA complement(join(29838876..29839408,29840558..29841130)) /locus_tag="TCM_015824" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.47 coverage" CDS complement(29840675..29841025) /locus_tag="TCM_015824" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24150.1" /translation="MVLHVDLRYVLPPFMNLLFFLLQTNPDKPWSPMAIAELVLDSPY LVLNLILSLFALFLLLFFFYVSFQLPVTVTFGPLLLRAQDFSIALLLSVVAAFLLQPS LFWLFFLLVIITYL" mobile_element 29841539..29841617 /note="source:scaffold_6_CACTA_0714 13422 13509" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29841548..29841618) /note="source:scaffold_10_CACTA_0137 6928 7009" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29842660..29843136 /note="source:CACAO_on_E48_scaffold_6 2425 2747" /mobile_element_type="transposon:TIR/hAT" mobile_element 29843123..29843412 /note="source:CACAO_on_E69_scaffold_9 704 1029" /mobile_element_type="transposon:TIR/hAT" mobile_element 29844270..29845023 /note="source:CACAO_Again_on_S_E126_scaffold_3 1 754" /mobile_element_type="transposon:TIR/hAT" gene complement(29847327..29852200) /locus_tag="TCM_015825" /note="dbxref CacaoGD:Thecc1EG015825" mRNA complement(join(29847327..29848079,29848778..29848857, 29848988..29849039,29849155..29849220,29849641..29849812, 29850541..29850801,29852072..29852200)) /locus_tag="TCM_015825" /product="Glycine-rich-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015833t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03220.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9314t4" CDS complement(join(29847567..29848079,29848778..29848857, 29848988..29849039,29849155..29849220,29849641..29849812, 29850541..29850767)) /locus_tag="TCM_015825" /note="paralog of Thecc1EG015833t1" /codon_start=1 /product="Glycine-rich-like protein" /protein_id="EOY24151.1" /db_xref="Phytozome:POPTR_0003s03220.1" /db_xref="TAIR:AT4G17620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTF1" /translation="MDFSEQDVDVFGEDYNNTNSNTHDDSHESSSSHSSSSSSSASSS SASSSPNGSDGGETSSANEAQAAEEKKKLEKKERGFGHGSWQNDRGSPRQGYGYGSKF ANGRHDERFVSELKLSKSEGTLSRKCIAFQEPCELACHSRVEGGDVYFDDRSLRLFKR LITEDIGADLNQDLCSEGLGDLLACIRDKNIPLQNIHFVNLISFLSLTFQNKPAFLLA AFLTGQPISIFKLAFLLVAIFLTLLFLFFSVELHLTPHPISLRARGFSIALFISIVAV GFLPPPLFWVVFFFIMITAPSHDKLDDLFLCFLRCFALSLHSFPTFMINIMLNNENPD PSSPQVVDLEVGTVAIEGERQPLRSQQSSEPDCVE" mobile_element complement(29852575..29853252) /note="source:CACAO_Helitron_E81_scaffold_3 2561 3233" /mobile_element_type="transposon:Helitron" mobile_element 29853311..29853925 /note="source:scaffold_9_CACTA_0932 2792 3402" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29853473..29854568) /note="source:scaffold_2_CACTA_0244 12390 13472" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29853926..29854236 /note="source:INTACT135F_F90_scaffold_2-int 12870 13787" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29855237..29855367 /note="source:CACAO_PIF_E119_scaffold_3 4537 4669" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(29858196..29862113) /note="source:CACAO_M_E33977_F20_scaffold_4 789 4694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29862101..29862205) /note="source:INTACT23_F11_scaffold_9-int 807 912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29862196..29863038 /note="source:INTACT45_F20_scaffold_6-int 7204 8072" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29864628..29865069) /locus_tag="TCM_015828" /note="dbxref CacaoGD:Thecc1EG015828" mRNA complement(29864628..29865069) /locus_tag="TCM_015828" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage" CDS complement(29864679..29864945) /locus_tag="TCM_015828" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24152.1" /translation="MWMSSEKTITTTTAITTMIPMKPLPLIHRRHRPPLHHISSSAPS SSGSDDDETSNASGSESSGGEVANVNTNSYDYDNNNSEKGIYGL" mobile_element complement(29866491..29866761) /note="source:CACAO_on_E33_A_scaffold_3 863 1179" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 29867337..29867493 /note="source:INTACT446_F218_scaffold_9-int 7172 7350" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(29869082..29876361) /locus_tag="TCM_015830" /note="dbxref CacaoGD:Thecc1EG015830" mRNA complement(join(29869082..29869333,29870281..29870616, 29871182..29871355,29872054..29872340,29876237..29876361)) /locus_tag="TCM_015830" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS complement(join(29870363..29870616,29871182..29871355, 29872054..29872297)) /locus_tag="TCM_015830" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24153.1" /translation="MVFHVDLRYVVPPFVNAFLLLLQTNQDKPWNPIPIVVPVLDSPY LILKLTFLLFALFLLMSFFYVSCELPITFRPLELRTHGDRGLAGWQREREREKGGLVN NESFRGVGDDKPSVICPSPPRNDDRQASIDSPSPHRDEQDVDVFGEDYNNNKSNNHDD SHESSSFHSSSSSSSASSSSNGSDGGDTISASGSASSGGEEVGNVNTNNYDYNNNSEK VIAGF" mobile_element 29878366..29879361 /note="source:scaffold_1_CACTA_0028 11315 12317" /mobile_element_type="transposon:TIR/CACTA" gene complement(29880807..29890091) /locus_tag="TCM_015833" /note="dbxref CacaoGD:Thecc1EG015833" mRNA complement(join(29880807..29881127,29883623..29884378, 29886832..29886950,29887090..29887296,29887393..29887530, 29888415..29888527,29889163..29890091)) /locus_tag="TCM_015833" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" mobile_element 29882112..29883163 /note="source:INTACT135F_F90_scaffold_2-int 12869 13998" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(29883741..29884378,29886832..29886950, 29887090..29887296,29887393..29887530,29888415..29888527, 29889163..29889711)) /locus_tag="TCM_015833" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24154.1" /translation="MQLLIDLRYTCPPLLNLFSFLPLTSQNKPAFLLAAFLTDQPISI FMLAFLLVATFLTLLFLFFSAELHLTPHPISLRARGFSIALFISLVAAGFLPPSLFWL VYLFILITAPWHDKLFDLFIRFFRCFALTLQSLPTFMINVTQNHENLDPSSPQVVDLE VGTVAIEGERQPLRSQQSSEPDCMTRTEMSLSLLEGSCRSKGSAVALCGPRTFARDTY TYCAPNYSLAVKTPVKVRKLTNWTPPLLGQMKFNVDSAARRCAGESWIGDSENAVKWT NEPDLAAWRTWRWILEIESLKTRLKGWIIVHTMREGNEKADRLDNEGIGRTQNLMLWF SSWVFSESVPHAWVAFDLGYGLSGTLCFSFCSVGACTDARAFPLLKSSEFVDKNTIHQ KKKKARKRRTTMHLLIDLRYTLSPLLNLISFPSLISQNKPAFLLAAFLTDQLISIFML AFLLVAIFLTLLFLLFSVELPLTPHPISLRARGFSIALFISLVASGFLPPSLFWVVFL FIMITAPWHDKLFDLFIRFFRCSALTLQSLPTFMINITQNHENPDPSPPQVVDLEVGT VEIEGERQALRSQQSSEPDCV" mobile_element 29884954..29886580 /note="source:scaffold_10_CACTA_0130 7525 9287" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29891851..29891959) /note="source:scaffold_7_CACTA_0795 2929 3030" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29892461..29893966) /note="source:scaffold_5_CACTA_0607 5147 6670" /mobile_element_type="transposon:TIR/CACTA" gene 29893886..29895010 /locus_tag="TCM_015834" /note="dbxref CacaoGD:Thecc1EG015834" mRNA join(29893886..29894261,29894361..29894454, 29894546..29894603,29894670..29895010) /locus_tag="TCM_015834" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.90 coverage" CDS join(29894215..29894261,29894361..29894454, 29894546..29894603,29894670..29894752) /locus_tag="TCM_015834" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24155.1" /translation="MFMKSDSPYVDVYFNRPERFHLGYVSSSRSPSPDSERGLAAFIE NQTVLLVTLMTEPVHQVMAVIECSGVARIHVFSRLRQEGLGRLCNRSVG" gene complement(29895672..29899471) /locus_tag="TCM_015835" /note="dbxref CacaoGD:Thecc1EG015835" mRNA complement(join(29895672..29896123,29896213..29896325, 29896743..29896823,29897024..29897076,29897161..29897269, 29897888..29897947,29898205..29898287,29898645..29898810, 29899357..29899386)) /locus_tag="TCM_015835" /product="Calcineurin B-like protein 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004840001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015411t1" /inference="similar to AA sequence:Phytozome:GSVIVT01004842001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09652t00001" mRNA complement(join(29895701..29896123,29896213..29896325, 29896743..29896823,29897024..29897076,29897161..29897269, 29897888..29897947,29898205..29898287,29898645..29898810, 29899357..29899471)) /locus_tag="TCM_015835" /product="Calcineurin B-like protein 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004840001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015411t1" /inference="similar to AA sequence:Phytozome:GSVIVT01004842001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09652t00001; alternateUTRof:Thecc1EG015835t1; inference alignment:Newbler:10:TSA:cgbaB_g09652t00001" CDS complement(join(29896060..29896123,29896213..29896325, 29896743..29896823,29897024..29897076,29897161..29897269, 29897888..29897947,29898205..29898287,29898645..29898723)) /locus_tag="TCM_015835" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015411t1" /codon_start=1 /product="Calcineurin B-like protein 1 isoform 1" /protein_id="EOY24156.1" /db_xref="Phytozome:GSVIVT01004842001" /db_xref="TAIR:AT4G17615.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q19PJ2" /translation="MGCFQSKVTRQYPGHEDPITLASQTAFSVSEVEALFELYKSISS SVIDDGLISKEEFQLALFKNRKKENIFANRIFDLFDAKKKGVIDFGDFVRALNVFHPN VSQEDKITFAFKLYDMDGTGFIERNEVKQMLIALLCESEMKLADETIEAILDKTFLDA DINQDGKIDISEWKNFVSRNPSLLKIMTLPYLRDITTTFPSFVFNSEVDEVAT" CDS complement(join(29896060..29896123,29896213..29896325, 29896743..29896823,29897024..29897076,29897161..29897269, 29897888..29897947,29898205..29898287,29898645..29898723)) /locus_tag="TCM_015835" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015411t1" /codon_start=1 /product="Calcineurin B-like protein 1 isoform 1" /protein_id="EOY24157.1" /db_xref="Phytozome:GSVIVT01004842001" /db_xref="TAIR:AT4G17615.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q19PJ2" /translation="MGCFQSKVTRQYPGHEDPITLASQTAFSVSEVEALFELYKSISS SVIDDGLISKEEFQLALFKNRKKENIFANRIFDLFDAKKKGVIDFGDFVRALNVFHPN VSQEDKITFAFKLYDMDGTGFIERNEVKQMLIALLCESEMKLADETIEAILDKTFLDA DINQDGKIDISEWKNFVSRNPSLLKIMTLPYLRDITTTFPSFVFNSEVDEVAT" mobile_element complement(29904030..29904088) /note="source:CACAO_Mariner_E220_scaffold_9 11013 11071" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 29906714..29912146 /locus_tag="TCM_015836" /note="dbxref CacaoGD:Thecc1EG015836" mRNA join(29906714..29907335,29909358..29909432, 29909870..29910004,29910112..29910165,29910241..29910333, 29910444..29910536,29910900..29911004,29911119..29911217, 29911520..29911979) /locus_tag="TCM_015836" /product="Serine/threonine-protein kinase SAPK3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29822.m003504" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001052t1" /inference="similar to AA sequence:ricco:29822.m003504" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc885t4" mRNA join(<29906964..29906987,29907224..29907335, 29909358..29909432,29909903..29910004,29910112..29910165, 29910241..29910333,29910444..29910536,29910900..29911004, 29911119..29911217,29911520..29912146) /locus_tag="TCM_015836" /product="Serine/threonine-protein kinase SAPK3 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29822.m003504" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001052t1" /inference="similar to AA sequence:ricco:29822.m003504" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc885t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc885t4" CDS join(<29906965..29906987,29907224..29907335, 29909358..29909432,29909903..29910004,29910112..29910165, 29910241..29910333,29910444..29910536,29910900..29911004, 29911119..29911217,29911520..29911798) /locus_tag="TCM_015836" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29822.m003504; paralog of Thecc1EG001052t1" /codon_start=1 /product="Serine/threonine-protein kinase SAPK3 isoform 2" /protein_id="EOY24159.1" /db_xref="TAIR:AT4G33950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P0C5D6" /translation="CRRRGLLRYEPLKELGTGNFGVARLVKDKRTTELVAVKYIERGK KIDENVQREIINHRSLRHPNIIRFKEVLLTPTHLAIVMEYAAGGELFERICSAGRFSE DEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPTPRLKICDFGYSKSAVLHSQ PKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTI GRIMSVQYSIPDYVRVSADCRYLLSHIFVADPAKRITIPEIKQHPWFLKNLPKELVEI EKTNYAESERGQPSQRVEEIMRIIQEAKTPAEGAKVGEQAAAGSSDPDDAEADLESEI DVSGDFDAPM" CDS join(29907213..29907335,29909358..29909432, 29909870..29910004,29910112..29910165,29910241..29910333, 29910444..29910536,29910900..29911004,29911119..29911217, 29911520..29911798) /locus_tag="TCM_015836" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29822.m003504; paralog of Thecc1EG001052t1" /codon_start=1 /product="Serine/threonine-protein kinase SAPK3 isoform 1" /protein_id="EOY24158.1" /db_xref="TAIR:AT4G33950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P0C5D6" /translation="MGERYEPLKELGTGNFGVARLVKDKRTTELVAVKYIERGKKIDE NVQREIINHRSLRHPNIIRFKEIKSKVQHISLQVLLTPTHLAIVMEYAAGGELFERIC SAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPTPRLKICDFGYSK SAVLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDP RNFRKTIGRIMSVQYSIPDYVRVSADCRYLLSHIFVADPAKRITIPEIKQHPWFLKNL PKELVEIEKTNYAESERGQPSQRVEEIMRIIQEAKTPAEGAKVGEQAAAGSSDPDDAE ADLESEIDVSGDFDAPM" gene 29915468..29916258 /locus_tag="TCM_015837" /note="dbxref CacaoGD:Thecc1EG015837" mRNA join(29915468..29915851,29916015..29916258) /locus_tag="TCM_015837" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014804t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08230.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16495t00001" CDS join(29915533..29915851,29916015..29916031) /locus_tag="TCM_015837" /note="paralog of Thecc1EG014804t1" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /protein_id="EOY24160.1" /db_xref="Phytozome:POPTR_0003s08230.1" /translation="MEARPLAFMVLVVVAGVAATWEVKMAGAELSDAQCKEERNLGIN ACKPVVYGKLPSPECCQRVRVTHLECVCPVISPQLAALIDINRAVRLIEGCGRRVPRH YKCGSITTP" gene 29919253..29922785 /locus_tag="TCM_015838" /note="dbxref CacaoGD:Thecc1EG015838" mRNA join(29919253..29919896,29920531..29920629, 29921343..29921480,29922123..29922532) /locus_tag="TCM_015838" /product="Peptidyl-prolyl cis-trans isomerases isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005774t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc333t6_C1; inference alignment:Newbler:10:TSA:cgbaB_g08072t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc528t4" mRNA join(29919281..29919896,29920531..29920629, 29920858..29920902,29921343..29921480,29922123..29922785) /locus_tag="TCM_015838" /product="Peptidyl-prolyl cis-trans isomerases isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005774t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08072t00001" CDS join(29919510..29919896,29920531..29920629, 29920858..29920902,29921343..29921480,29922123..29922485) /locus_tag="TCM_015838" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005774t1" /codon_start=1 /product="Peptidyl-prolyl cis-trans isomerases isoform 1" /protein_id="EOY24161.1" /db_xref="Phytozome:POPTR_0003s08220.1" /db_xref="TAIR:AT4G17070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HD70" /translation="MGRRPNDPENSRFASLVLLLVALFSCVFVYAVVSILLNPNVNSQ NSSFQYLEAMASGDLGERKGECCRGIENLELWGPAVKWGSEFKFNSSVECCQACKTMC SGNDGPCLCDTWVFCGNKEACGSRFGECWLKKQKDTLAPDRQEAGETVSWTSGLIFGK GEGIVEMETKYGTLHIKLFPDCAPYSVAYILELLTLRHCAGCQIDRAESRGKYWDSEG NHIKDAPFGPPFALIQGTLEAQGTPFKKIPTEARPTIRRGSVAWIGSGPEFFISLANH EEWKNSYTVFGSVLPEDMEIAEKITQLPTKSDVWSNINVSVLQKPVPLVMRRMKRSLG DLNTNVKSD" CDS join(29919510..29919896,29920531..29920629, 29921343..29921480,29922123..29922485) /locus_tag="TCM_015838" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005774t1" /codon_start=1 /product="Peptidyl-prolyl cis-trans isomerases isoform 2" /protein_id="EOY24162.1" /db_xref="Phytozome:POPTR_0003s08220.1" /db_xref="TAIR:AT4G17070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HD70" /translation="MGRRPNDPENSRFASLVLLLVALFSCVFVYAVVSILLNPNVNSQ NSSFQYLEAMASGDLGERKGECCRGIENLELWGPAVKWGSEFKFNSSVECCQACKTMC SGNDGPCLCDTWVFCGNKEACGSRFGECWLKKQKDTLAPDRQEAGETVSWTSGLIFGK GELFPDCAPYSVAYILELLTLRHCAGCQIDRAESRGKYWDSEGNHIKDAPFGPPFALI QGTLEAQGTPFKKIPTEARPTIRRGSVAWIGSGPEFFISLANHEEWKNSYTVFGSVLP EDMEIAEKITQLPTKSDVWSNINVSVLQKPVPLVMRRMKRSLGDLNTNVKSD" mobile_element complement(29920504..29920581) /note="source:CACAO_PIF_E115_scaffold_9 14235 14295" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(29920553..29920634) /note="source:CACAO_on_E506_scaffold_4 4683 4746" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 29922901..29929037 /locus_tag="TCM_015839" /note="dbxref CacaoGD:Thecc1EG015839" mRNA join(29922901..29924001,29924131..29924354, 29924480..29924568,29924742..29924903,29925025..29925813, 29926043..29926153,29926240..29926500,29926593..29926816, 29926898..29927504,29928993..29929037) /locus_tag="TCM_015839" /product="Restriction endonuclease, type II-like superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G41150.1" /inference="similar to AA sequence:Phytozome:GSVIVT01002051001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1221t3" CDS join(29923142..29924001,29924131..29924354, 29924480..29924568,29924742..29924903,29925025..29925813, 29926043..29926153,29926240..29926500,29926593..29926816, 29926898..29927108) /locus_tag="TCM_015839" /codon_start=1 /product="Restriction endonuclease, type II-like superfamily protein" /protein_id="EOY24163.1" /db_xref="Phytozome:GSVIVT01002051001" /db_xref="TAIR:AT5G41150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HD70" /translation="MVLKFHEQIVSDLLQDPNGGLVILSSGLSLPKLLSSFLSFHSQS NGSLLLLHSPQFSSSLKSLLLSLSPNLPLSEITADLPSSNRLSLYSSNRVLLLSPRIL IVDLLTQKAQTSLISGVIFLNTHSLSESSTESFIVRIIKTFNKNASVYAFSDKPHSMV SGFAKTERIMKSLFIKKLHLWPRFQVNVSEELERDPPEVVDIRVPMSKYMVGIQKAIV EVMDACLKEMRKTNKVDVEDLTFENGLFKSFDEIVRRQLDPIWHTLGKKTKQLVSDLK TLRKLLDYLVRYDAVSYLKYLDTLRVSESFRSVWIFAESSYKIFDYARKRVYCFSRSD GTKINKPSKNVSGKKRKLKEDGSINEGAIAGTSSTGTSNGVVLEEVLEEPPKWKVLRE VLEEIEEERQKQASSEELLLDVGEDNNGIVLVVCKDERSCMQLEDCITNSPQKVMRDE WEKYLLSKVELRSVQTSHKKKPKKPKTPKGYGILDGIVPVTSAQNAEPSSACKQEHEA LLAAASELRRNQTKMENDAADDPEPQVGSRGHGKGRGRGRIKKGPANTRCSRNKDGSH STEAATDDRPEISVSENEGHGNEINPTIGNGLFRKHIDRIDDTKTDNSKQLPPVHFHA LERDQPILDVLKPSVIIVYHPDTTFVREIEVYKAENPGKRLKVYFLFYEASTEVQKFE ASIRRENGAFESLIRQKSMMMIPVDQDGFCLGSNSSSDLQGSSSQNSITRKAGGRKEA EKEKQVVVDMREFMSSLPNVLHQKGMRIIPVTLEVGDYVLSPLICVERKSIQDLFMSF TSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLH FPRLRILWSRSLHATAEIFASLKANQDEPDEAKAMRVGVPSEEGFIENDVRAENYNTS AVEFLRRLPGVTDSNYRAIMDGCKSLAELALLPMEKLAELMGGRKAAQTLRDFLDAKC PTLL" gene complement(29929380..>29932634) /locus_tag="TCM_015840" /note="dbxref CacaoGD:Thecc1EG015840" mRNA complement(join(29929380..29930097,29930209..29930338)) /locus_tag="TCM_015840" /product="3-deoxy-d-arabino-heptulosonate 7-phosphate synthase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29772.m000321.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015842t1" /inference="similar to AA sequence:ricco:27940.m000333" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc124t7" mRNA complement(join(29929402..29930097,29932612..>29932634)) /locus_tag="TCM_015840" /product="3-deoxy-d-arabino-heptulosonate 7-phosphate synthase isoform 2" /inference="alignment:exonerate- protein:2:ricco:29772.m000321.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015842t1" /inference="similar to AA sequence:ricco:27940.m000333" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is weak, protein is partial5; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc124t5; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc124t7" CDS complement(join(29929828..29930097,29932612..>29932632)) /locus_tag="TCM_015840" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27940.m000333; paralog of Thecc1EG015842t1" /codon_start=1 /product="3-deoxy-d-arabino-heptulosonate 7-phosphate synthase isoform 2" /protein_id="EOY24165.1" /db_xref="TAIR:AT4G33510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2XHI6" /translation="LIASNPRAELRAFFDVHDQEGSYPGEVHLEMTGQNVTECVGGSM TVAFDDLSSRYHTHCDPRLNASQSLELAFAISERLRRRLESANKFRGAYRCN" CDS complement(join(29929828..29930097,29930209..29930271)) /locus_tag="TCM_015840" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27940.m000333; paralog of Thecc1EG015842t1" /codon_start=1 /product="3-deoxy-d-arabino-heptulosonate 7-phosphate synthase isoform 1" /protein_id="EOY24164.1" /db_xref="TAIR:AT4G33510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2XHI6" /translation="MHGNTFTALCGRKTRGFDAIRAELRAFFDVHDQEGSYPGEVHLE MTGQNVTECVGGSMTVAFDDLSSRYHTHCDPRLNASQSLELAFAISERLRRRLESANK FRGAYRCN" gene complement(29930062..29933342) /locus_tag="TCM_015841" /note="dbxref CacaoGD:Thecc1EG015841" mRNA complement(join(29930062..29930097,29930209..29930233, 29932749..29933342)) /locus_tag="TCM_015841" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc126t10" gene 29930376..29951504 /locus_tag="TCM_015842" /note="dbxref CacaoGD:Thecc1EG015842" mRNA join(29930376..29931016,29931106..29931248, 29931583..29931859,29932388..29932633,29932743..29933150, 29951481..29951504) /locus_tag="TCM_015842" /product="3-deoxy-d-arabino-heptulosonate 7-phosphate synthase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007435t1" /inference="similar to AA sequence:ricco:27940.m000333" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc124t10_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9392t2" mRNA join(29930376..29931016,29931106..29931248, 29931583..29931859,29932388..29932633,29932783..29933150, 29951481..29951504) /locus_tag="TCM_015842" /product="3-deoxy-d-arabino-heptulosonate 7-phosphate synthase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007435t2" /inference="similar to AA sequence:ricco:27940.m000333" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc124t1_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9392t2" mRNA join(29930471..29931016,29931106..29931383, 29931583..29931859,29932388..29932633,29932743..29933921) /locus_tag="TCM_015842" /product="3-deoxy-d-arabino-heptulosonate 7-phosphate synthase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007435t1" /inference="similar to AA sequence:ricco:27940.m000333" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9392t2" CDS join(29930531..29931016,29931106..29931383, 29931583..29931859,29932388..29932633,29932743..29933015) /locus_tag="TCM_015842" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27940.m000333; paralog of Thecc1EG007435t1" /codon_start=1 /product="3-deoxy-d-arabino-heptulosonate 7-phosphate synthase isoform 1" /protein_id="EOY24167.1" /db_xref="TAIR:AT4G33510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P29976" /translation="MALALSASVNLTAPRRSLLGTTTRFPLSPPIPTLHITETPNPIT IPSVSASSPPPSTDYNQWSLDSWKSKRALQLPEYPDVDELELVLQTIGSFPPIVFAGE ARKLEEKLANAAVGKAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGIVLTFGAQIPV IAVGRMAGQFAKPRSEPFEIKDGVQLPSYRGDNINGDAFDEKSRVPDPQRLIRAYLQS VGTLNLLRAFATGGYAAMQRVSEWNLDFVKHSEQGDRYMELAQRVDEALGFMAAAGLT VDDPVMNTFDFWTSHECLHLPYEQALTREDSTTGLYYDCSAHLLWVGERTRQLDGAHV EFLRGISNPLGIKVSDKMDPKELVKLCEILNPRNKPGRLIIITRMGAENMRIKLPHLI RAVRQAGLIVTWVSDPMHGNTIKAPCGLKTRGFDAIRAELRAFFDVHDQEGSYPGGVH LEMTGQNVTECIGGSKTVTFDDLNSRYHTHCDPRLNASQSLELAFAISERLRRKRLKS ANEFRSAYRFN" CDS join(29930531..29931016,29931106..29931248, 29931583..29931859,29932388..29932633,29932743..29933015) /locus_tag="TCM_015842" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27940.m000333; paralog of Thecc1EG007435t1" /codon_start=1 /product="3-deoxy-d-arabino-heptulosonate 7-phosphate synthase isoform 2" /protein_id="EOY24168.1" /db_xref="TAIR:AT4G33510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P29976" /translation="MALALSASVNLTAPRRSLLGTTTRFPLSPPIPTLHITETPNPIT IPSVSASSPPPSTDYNQWSLDSWKSKRALQLPEYPDVDELELVLQTIGSFPPIVFAGE ARKLEEKLANAAVGKAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGIVLTFGAQIPV IAVGRMAGQFAKPRSEPFEIKDGVQLPSYRGDNINGDAFDEKSRVPDPQRYMELAQRV DEALGFMAAAGLTVDDPVMNTFDFWTSHECLHLPYEQALTREDSTTGLYYDCSAHLLW VGERTRQLDGAHVEFLRGISNPLGIKVSDKMDPKELVKLCEILNPRNKPGRLIIITRM GAENMRIKLPHLIRAVRQAGLIVTWVSDPMHGNTIKAPCGLKTRGFDAIRAELRAFFD VHDQEGSYPGGVHLEMTGQNVTECIGGSKTVTFDDLNSRYHTHCDPRLNASQSLELAF AISERLRRKRLKSANEFRSAYRFN" CDS join(29930531..29931016,29931106..29931248, 29931583..29931859,29932388..29932633,29932783..29932815) /locus_tag="TCM_015842" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:27940.m000333; paralog of Thecc1EG007435t2" /codon_start=1 /product="3-deoxy-d-arabino-heptulosonate 7-phosphate synthase isoform 3" /protein_id="EOY24169.1" /db_xref="TAIR:AT4G33510.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P29976" /translation="MALALSASVNLTAPRRSLLGTTTRFPLSPPIPTLHITETPNPIT IPSVSASSPPPSTDYNQWSLDSWKSKRALQLPEYPDVDELELVLQTIGSFPPIVFAGE ARKLEEKLANAAVGKAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGIVLTFGAQIPV IAVGRMAGQFAKPRSEPFEIKDGVQLPSYRGDNINGDAFDEKSRVPDPQRYMELAQRV DEALGFMAAAGLTVDDPVMNTFDFWTSHECLHLPYEQALTREDSTTGLYYDCSAHLLW VGERTRQLDGAHVEFLRGISNPLGIKVSDKMDPKELVKLCEILNPRNKPGRLIIITRM GAENMRIKLPHLIRAVRQAGLIVTWVSDPMHGNTIKAPCGLKTRGFDAIRGAILEEFI WR" CDS complement(29933078..29933272) /locus_tag="TCM_015841" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24166.1" /translation="MQCKMRNKPTNFIHKITHTHTPSQIDYLFRNEGGGKFTAPLRKE SYLLLQKISPLQTQDNGKTN" gene complement(29934468..29937927) /locus_tag="TCM_015843" /note="dbxref CacaoGD:Thecc1EG015843" mRNA complement(join(29934468..29935560,29935692..29936224, 29936411..29937127,29937492..29937660,29937676..29937927)) /locus_tag="TCM_015843" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g006840.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031095t1" /inference="similar to AA sequence:Phytozome:GSVIVT01014613001" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1859t1" CDS complement(join(29934916..29935560,29935692..29936224, 29936411..29937127,29937492..29937507)) /locus_tag="TCM_015843" /note="paralog of Thecc1EG031095t1" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY24170.1" /db_xref="Phytozome:GSVIVT01014613001" /db_xref="TAIR:AT4G03500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BD39" /translation="MRQLPDCPCTLFEEQISSLIRFFTELSAKLFPLVGSLVFEHHYT HNISPFESKSLMDQRLLKAARSGDLNVIKQLADAEGNILGGTTPQGNTALHMVARFGH ENLVQELMKRQPNLVLKSNLKGETPVHVAARGGHWRIVLLFRDSASGSNDVYIARIRD NYGNTPLHCAVRNDHYLVVWKLADKDRESLELVNDAGESPLSIAIDLKLAVTAEAIIG LNRSTLDYRGPNGQTPLHCAVIRRDLHIMRKMHIRKPKLIKMQDEKQRTPLHYAAALG EYEIVKLLLEWDTSAAYQGDDNEQIPLHLAAENGQLNLLKILLDPCPDTIELLDNEQQ NILHFAAKNGNIDAVSFILKLPEMEDLVNAADMNGNTPLHLAAKNFHSSIVYILTRNA KVDIRAINKSHETPLAIVQSTDDRGMELQKHLTLKALKSSYAKRAINPKDVVDNAQFS YVEVDKVERGGKKSREMAQIISVMATLIATFTFTAAFTIPGGFINDGPDEGMATLIRK SAFKAFVITDTIAMTSSMTAAVMVFWSSSRRNSESFMDTLPFAIGLTWIALVAMALAF VTGLFVVLSKNLWLGIVVCVIGCAAPAILYIFAPLFLLVFDRLSSTRARRRNIVEDNP FLFVFRLAKMIS" gene 29938567..29942994 /locus_tag="TCM_015844" /note="dbxref CacaoGD:Thecc1EG015844" mRNA join(29938567..29940332,29942647..29942994) /locus_tag="TCM_015844" /product="Alcohol dehydrogenase transcription factor Myb/SANT family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08210.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08210.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1560t3" CDS join(29939052..29940332,29942647..29942790) /locus_tag="TCM_015844" /codon_start=1 /product="Alcohol dehydrogenase transcription factor Myb/SANT family protein, putative" /protein_id="EOY24171.1" /db_xref="Phytozome:POPTR_0003s08210.1" /db_xref="TAIR:AT2G44730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BBD2" /translation="MSTPTSPPQSSSATATRRVPPPCWSKEETLALIEAYKEKWFALR RGNLKAPDWDAVSTAVTSAADPGTTKSSVQCRHKIEKLRKRYRAEKQRSLKNPGKFSS SWDLFPLLDSMSFASTLVAGSDDQDHTVDSKVSVFDGFGLKLKNREWIDGNSGSNIGF DHDLRGGYGSNFDFDHKFEGRYGVKLQGNRDFVAKGIKFKSNGRLGDGYGSMVDFDHN FVEGVDNVGEFPLKTLGDRNLVNPEFKPKNFGSPNLNYDYYNDLEEYGIDEGMGFLGK VSSAWDSVPQGFHPKKCGRVDRTTEVDCRGLNGFASSSRPGLGRKNGGVRVKKGVDPV EEMVSSIKLLAEGFVRMEKMKMEMVKEIEKMRMEMEMKHNEMILESQQKIVDAFAKAL LEKKKRKKKPSALSPNVNGNAVEEWQSDDMIKKKKDDGNSKLGYFLSSNFNLRVVSKT PSVTVTQLWQPYIYFYANFLMIKD" gene complement(29944154..29947864) /locus_tag="TCM_015845" /note="dbxref CacaoGD:Thecc1EG015845" mRNA complement(join(29944154..29944922,29945827..29946055, 29946175..29946505,29946919..29947141,29947268..29947864)) /locus_tag="TCM_015845" /product="Cationic amino acid transporter, putative" /inference="alignment:exonerate-protein:2:frave:gene10780" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044268t1" /inference="similar to AA sequence:frave:gene10780" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9306t2" CDS complement(join(29944369..29944922,29945827..29946055, 29946175..29946505,29946919..29947141,29947268..29947742)) /locus_tag="TCM_015845" /note="dbxref frave:gene10780; paralog of Thecc1EG044268t1" /codon_start=1 /product="Cationic amino acid transporter, putative" /protein_id="EOY24172.1" /db_xref="TAIR:AT5G04770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZ12" /translation="MSFSLLNAYLNPHLRLLIESHKTLISFTNMATIQPTHNKVFFFN YLQSLSQTPRRLRKRMLATWTPDQELNHVRLRSGADMKRKLRWYELVALGVGGMLGAG VFVTTGHVARNNSGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGE FVGYFAGANILLEYVLSNAAVARSFTEYLAAALGVSDPDSWRVGVPGLLEGWNKLDFT AVALVLLLTLCLCHSTKESSILNLIMTIFHVVFFGFIIIVGFCNGSVDNLVKPGGLAP NGVRGILDGAAIVYFSYIGYDSVSTLAEEIQNPPVSLPVGIVGSVLIVSALYCLMALA LCVMVPYNQIDDKASYSIAFQKIGWKWAGNVVGAGASLGIVASLLVAMLGQARYLCVI GRARLVPSWLSKVHPSTGTPLNATLFLGLCTASIALFTDLKIVLEMINIGTLLVFYLV ANALIYRKYVIRSKNPPFRTLSFLFLLTASAIAFSISWKLKQQRWGLPLFGGIMITIT AFFQYMVPCLRQPSEWSVPFMPWPAAISIFLNVFLMTTLKMLAFQRFAIWACLITVFY VLYGVHSTYEAEEMEMTDMVVNDVPNPSFQLAKLDVI" gene complement(29950909..29960074) /locus_tag="TCM_015846" /note="dbxref CacaoGD:Thecc1EG015846" mRNA complement(join(29950909..29951192,29956326..29956391, 29956990..29957119,29957709..29958239,29958336..29959013, 29959768..29960074)) /locus_tag="TCM_015846" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is noncode_complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9369t1" mobile_element complement(29952988..29953040) /note="source:CACAO_M_E69306_F123_scaffold_9 4913 4970" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(29955088..29955573) /note="source:scaffold_10_CACTA_0130 8990 9593" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29955574..29955892 /note="source:CACAO_on_E706_scaffold_9 733 1072" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(29955893..29956380) /note="source:scaffold_10_CACTA_0130 8380 8989" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29956387..29956724) /note="source:scaffold_10_CACTA_0130 6255 6594" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(29958783..29959013,29959768..29959839)) /locus_tag="TCM_015846" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24173.1" /translation="MEGFDLESTLHRMNMFRQEQRKSMANTLAAQQFHGEYRRSGSRT STWLLTDNHGSESIVAPHIKSTITSTTSTTGPFPSPLLSPISRNSLVGCFKSGFTK" gene complement(29959900..29964934) /locus_tag="TCM_015847" /note="dbxref CacaoGD:Thecc1EG015847" mRNA complement(join(29959900..29960551,29961885..29961924, 29962531..29962587,29962875..29962956,29963259..29963344, 29963729..29963795,29963931..29963970,29964051..29964127, 29964210..29964297,29964399..29964530,29964621..29964906)) /locus_tag="TCM_015847" /product="Ureidoglycine aminohydrolase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08190.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08190.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc117t7; inference alignment:Newbler:10:TSA:cgbaP1_g05439t00001" mRNA complement(join(29960121..29960659,29960776..29960829, 29961438..29961508,29961886..29961924,29962531..29962587, 29962875..29962956,29963259..29963344,29963729..29963795, 29963931..29963970,29964051..29964127,29964210..29964297, 29964399..29964530,29964621..29964934)) /locus_tag="TCM_015847" /product="Ureidoglycine aminohydrolase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08190.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08190.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05439t00001" CDS complement(join(29960547..29960551,29961885..29961924, 29962531..29962587,29962875..29962956,29963259..29963344, 29963729..29963795,29963931..29963970,29964051..29964127, 29964210..29964297,29964399..29964530,29964621..29964684)) /locus_tag="TCM_015847" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ureidoglycine aminohydrolase isoform 3" /protein_id="EOY24176.1" /db_xref="Phytozome:POPTR_0003s08190.1" /db_xref="TAIR:AT4G17050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXV5" /translation="MQNPSLPQLHPFLLFPSFILISLFVIVLGDGGFCSAPSILDQTD ASSKPLYWKFTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVFSPLPDWTNTLGAY LITPAMGSYFVMYLAKMQENSRSGLPPHDVERFIFVIQGTITLTNTSGLSNKLMVDSY AYLPPNFEHSLKCDESATLAVFERRYAFLDNHMTGHIVGSTDKRPLLETPGEVFELRK LLPASIPYDFNIHIMDFQPGEFLNVKD" CDS complement(join(29960590..29960659,29960776..29960829, 29961438..29961508,29961886..29961924,29962531..29962587, 29962875..29962956,29963259..29963344,29963729..29963795, 29963931..29963970,29964051..29964127,29964210..29964297, 29964399..29964530,29964621..29964684)) /locus_tag="TCM_015847" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ureidoglycine aminohydrolase isoform 1" /protein_id="EOY24174.1" /db_xref="Phytozome:POPTR_0003s08190.1" /db_xref="TAIR:AT4G17050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXV5" /translation="MQNPSLPQLHPFLLFPSFILISLFVIVLGDGGFCSAPSILDQTD ASSKPLYWKFTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVFSPLPDWTNTLGAY LITPAMGSYFVMYLAKMQENSRSGLPPHDVERFIFVIQGTITLTNTSGLSNKLMVDSY AYLPPNFEHSLKCDESATLAVFERRYAFLDNHMTGHIVGSTDKRPLLETPGEVFELRK LLPASIPYDFNIHIMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDA IWMAPFVPQWYAALGKTRSRYLLYKDVNRNPL" mRNA complement(join(29960635..29960659,29960776..29960829, 29961438..29961508,29961886..29961924,29962531..29962587, 29962880..29962956,29963259..29963344,29963729..29963795, 29963931..29963970,29964051..29964127,29964210..29964297, 29964399..29964530,29964621..29964906)) /locus_tag="TCM_015847" /product="Ureidoglycine aminohydrolase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08190.1" /inference="similar to AA sequence:ricco:27940.m000340" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc117t2; inference alignment:Newbler:10:TSA:cgbaP1_g05439t00001" CDS complement(join(29962580..29962587,29962880..29962956, 29963259..29963344,29963729..29963795,29963931..29963970, 29964051..29964127,29964210..29964297,29964399..29964530, 29964621..29964684)) /locus_tag="TCM_015847" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27940.m000340" /codon_start=1 /product="Ureidoglycine aminohydrolase isoform 2" /protein_id="EOY24175.1" /db_xref="TAIR:AT4G17050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXV5" /translation="MQNPSLPQLHPFLLFPSFILISLFVIVLGDGGFCSAPSILDQTD ASSKPLYWKFTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVFSPLPDWTNTLGAY LITPAMGSYFVMYLAKMQENSRSGLPPHDVERFIFVIQGTITLTNTSGLSNKLMVDSY AYLPPNFEHSLKCDESATLAVFERRYAFLDNHMTGHIVGSTDKRPLLETPGV" mobile_element 29965074..29965181 /note="source:CACAO_on_E22_A_scaffold_2 147 254" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 29965287..29965441 /note="source:CACAO_on_E22_A_scaffold_2 4875 5030" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 29967031..29992135 /locus_tag="TCM_015848" /note="dbxref CacaoGD:Thecc1EG015848" mRNA join(29967031..29967340,29967495..29967585, 29967811..29967905,29968008..29968528,29968645..29968855, 29968977..29969288,29970176..29970329,29970439..29970576, 29971206..29971287,29972157..29972443,29972560..29972673, 29973484..29973728,29974311..29974559,29974656..29974811, 29975151..29975288,29975405..29975647,29976515..29976642, 29976850..29976973,29977996..29978157,29978319..29978466, 29978568..29978668,29979083..29979244,29979654..29979701, 29980038..29980145,29981037..29981111,29981439..29981489, 29981932..29982075,29982168..29982298,29982897..29982984, 29983475..29983534,29983600..29983852,29984466..29984617, 29984727..29984797,29986073..29986229,29986537..29986647, 29987805..29987848,29987974..29988124,29988322..29988618, 29988707..29988759,29989154..29989223,29989338..29989654, 29989978..29990118,29990270..29990535,29990711..29992135) /locus_tag="TCM_015848" /product="TRNA/rRNA methyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15110.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1564t2" CDS join(29967158..29967340,29967495..29967585, 29967811..29967905,29968008..29968528,29968645..29968855, 29968977..29969288,29970176..29970329,29970439..29970576, 29971206..29971287,29972157..29972443,29972560..29972673, 29973484..29973728,29974311..29974559,29974656..29974811, 29975151..29975288,29975405..29975647,29976515..29976642, 29976850..29976973,29977996..29978157,29978319..29978466, 29978568..29978668,29979083..29979244,29979654..29979701, 29980038..29980145,29981037..29981111,29981439..29981489, 29981932..29982075,29982168..29982298,29982897..29982984, 29983475..29983534,29983600..29983852,29984466..29984617, 29984727..29984797,29986073..29986229,29986537..29986647, 29987805..29987848,29987974..29988124,29988322..29988618, 29988707..29988759,29989154..29989223,29989338..29989654, 29989978) /locus_tag="TCM_015848" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="TRNA/rRNA methyltransferase family protein isoform 1" /protein_id="EOY24177.1" /db_xref="Phytozome:POPTR_0001s15110.1" /db_xref="TAIR:AT4G17610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JP86" /translation="MSATEPNPMAAAALITSLSNSFRQVPLSAIPPMLDCVLASTPLP PMSIFSSLLDDLHNLIERANRDGKLDSDHRTNIASMVGALCHLLTEAKTNHEGLQSFL RKGFIPLMKMGHEFDRELLNQIADSFFDVVQKTNAWAVLEATLVPFFLRSVGVSASII QNEELDGTGWYRSSVFLVSNDLIENLDMDKDYMLALSGSFPLPLSCHVLSIILDAALR TFQAAPVTDSVLENGCCYAPKFIANLLWNLCNVTERLLLQCSENRSCTVGFLLPVIFK AFVSHSSFKVSVHGQTHILSRNRFFMRMWRCCGRLFSLGSLERRDAYSILSLYLSYFS CTETSENSDISDGAEEFDVSSEKELWNEIKAGLVDEEGLVRKQSLRILKTVLCMSSGS QCHSGISEKKSQGKHSVPHGVTKRELWAYNEAKSLGVGKVCSLVDSGLNSQQQWEAFF LLFEMLEEYGTHLVEAAWNHQITLLLQFSASDDNFVSAISRGVHQNQSETWGEVFSWL SILWKRGFCHDNPQVRCMIMQSFLGIEWTKYGSRVKSVPEIFILGPLMEALNDPVHHN DFGVKGVYSSKTIEGAGQFLHHYSSYLDSRERIVFLSSLVSLAKRKSFSRAGLMGLAE CIAASALGACKYIDNEVKFSKDGFVDKVQQENSLQNFLHDDGTELLDVFRYVLESSKQ HFNPNYRFRVCEKVVDAAALLVPASDVPFETLLHFISTLPREFTDYGGSLRVRVQDWL LQNHCTPHCGGTWMQLLDSLYGFPKRFITHNYLVENFNDEDLDAWDLEVRRWARVLFL VIKEEHQLVPLLMFIQNHGTNICKQKNNSEWIPVKFLTLILGLIQEIQVMQSRVAKLG VRIQIKSEMGLLETEERPNNVEVSIVYKMFTDPLLFILEELVSFANLSCSIFLSSSEI DDKVLPSSVRGKLGGPSQRRLSNSLTTAVLQAIMSVKAVACISAWCAQMRFGILLNSA FTFVWKFFCNTIASLTCNSESEAEVCLAAYEALAPALKALVSTFSPQTLDLFRENCKS LVPAVEGEPWLGSVVLSFLQNINDLLTVRFMARTRRAVLLNWKWVCLESLLLIPYYAF ESKLHVEDGRFFFSDAAVRHIVTDILESLENAGEGSVLPMLRSIRLALELFTPGRLSA VVSHCSGIDFQMIWHLVRSSWILHVSCNKRRVAPIAALLSSVLHPSLFSDGDMHETDN EPGPLKWFVEKLLEEGTKSPRTIRLAALHLTGLWLSNPRTIKYYIKELKLLTLYGSVA FDEDFEAELTENHDARTEVTLLAKNPDPELTELFINTELYARVSVAVLFYKLADLTNM VGSSSGNKDYQAALESGKLFLLELLDSVVNDKDLAKELYKKYSAIHRRKIRAWQMICV LSQFVDDDIVGEVAHCLHIALYRNNLPSVRQYLETFAINIYLKFPSLVAEQLVPTLRD YDMRPQALSSYVFVAANVIIHASKETQFRHLDELLPPILPLLTSHHHSLRGFTQVLVH QVLCKLFPPVDPRSSEFIPLEKRCFEDLKLYLAKNSDCMRLRASMEGYLDAYNPKNSA TPAGIFVSRVEEIEFECVPTSLMEQVLNFLNDVREDLRCSMAKDIVTIKNESLNISED PESIEKLSTACKERLFTELSKDAHLDFQKKITFSNHEKQDMNSSSLLGKEEVYKQLLE MEKEDGLLDQLLKSRSMAMERIRGNRQHIILVASLLDRIPNLAGLARTSEVFKASGLA VADAKIVHDKQFQLISVTAEKWVPIIEVPVNSVKQFLEKKKREGYSILGLEQTANSVP LDQYIYPKKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHEEPTLSLTAKQ KHHRSDKNTVAYKGKISSSHTIFLESHLQKGSYTKLYSYTHLLNGFAVHVTLEKVLSI LQNATGVRFIHEDVKVEKLTTHSPDFLRIPAGVWRRLGGAETSGEGVVIGFIDTGMNP YHPSFMRHSALGFLNSTNYKGKCTSGEQFPSTACNGKMDMEGSLCPYIDKFRGNWIAV YKALHTFGGYMSDVGAAVDRAVEDGVDRLSLSLGPSSVPPGLSALLNMLELEPLFATK AGVLVVQAAGNGGPSSSSIISFCPWITSVPASITDRKYKNTILLGNGQSFSGVGLARI LFSKFQIMI" mRNA join(29967883..29967905,29968008..29968528, 29968645..29968855,29968977..29969288,29970176..29970329, 29970439..29970576,29971206..29971287,29972157..29972443, 29972560..29972673,29973484..29973728,29974311..29974559, 29974656..29974811,29975151..29975288,29975405..29975647, 29976515..29976642,29976850..29976973,29977996..29978157, 29978319..29978466,29978568..29978668,29979083..29979244, 29979654..29979701,29980038..29980145,29981037..29981111, 29981439..29981489,29981932..29982075,29982168..29982298, 29982897..29982984,29983475..29983534,29983600..29983852, 29984466..29984617,29984727..29984797,29986073..29986229, 29986720..29987317) /locus_tag="TCM_015848" /product="TRNA/rRNA methyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15110.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15110.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1463t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1564t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9379t2" CDS join(29968200..29968528,29968645..29968855, 29968977..29969288,29970176..29970329,29970439..29970576, 29971206..29971287,29972157..29972443,29972560..29972673, 29973484..29973728,29974311..29974559,29974656..29974811, 29975151..29975288,29975405..29975647,29976515..29976642, 29976850..29976973,29977996..29978157,29978319..29978466, 29978568..29978668,29979083..29979244,29979654..29979701, 29980038..29980145,29981037..29981111,29981439..29981489, 29981932..29982075,29982168..29982298,29982897..29982984, 29983475..29983534,29983600..29983852,29984466..29984617, 29984727..29984797,29986073..29986229,29986720..29986737) /locus_tag="TCM_015848" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="TRNA/rRNA methyltransferase family protein isoform 2" /protein_id="EOY24178.1" /db_xref="Phytozome:POPTR_0001s15110.1" /db_xref="TAIR:AT4G17610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JP86" /translation="MDKDYMLALSGSFPLPLSCHVLSIILDAALRTFQAAPVTDSVLE NGCCYAPKFIANLLWNLCNVTERLLLQCSENRSCTVGFLLPVIFKAFVSHSSFKVSVH GQTHILSRNRFFMRMWRCCGRLFSLGSLERRDAYSILSLYLSYFSCTETSENSDISDG AEEFDVSSEKELWNEIKAGLVDEEGLVRKQSLRILKTVLCMSSGSQCHSGISEKKSQG KHSVPHGVTKRELWAYNEAKSLGVGKVCSLVDSGLNSQQQWEAFFLLFEMLEEYGTHL VEAAWNHQITLLLQFSASDDNFVSAISRGVHQNQSETWGEVFSWLSILWKRGFCHDNP QVRCMIMQSFLGIEWTKYGSRVKSVPEIFILGPLMEALNDPVHHNDFGVKGVYSSKTI EGAGQFLHHYSSYLDSRERIVFLSSLVSLAKRKSFSRAGLMGLAECIAASALGACKYI DNEVKFSKDGFVDKVQQENSLQNFLHDDGTELLDVFRYVLESSKQHFNPNYRFRVCEK VVDAAALLVPASDVPFETLLHFISTLPREFTDYGGSLRVRVQDWLLQNHCTPHCGGTW MQLLDSLYGFPKRFITHNYLVENFNDEDLDAWDLEVRRWARVLFLVIKEEHQLVPLLM FIQNHGTNICKQKNNSEWIPVKFLTLILGLIQEIQVMQSRVAKLGVRIQIKSEMGLLE TEERPNNVEVSIVYKMFTDPLLFILEELVSFANLSCSIFLSSSEIDDKVLPSSVRGKL GGPSQRRLSNSLTTAVLQAIMSVKAVACISAWCAQMRFGILLNSAFTFVWKFFCNTIA SLTCNSESEAEVCLAAYEALAPALKALVSTFSPQTLDLFRENCKSLVPAVEGEPWLGS VVLSFLQNINDLLTVRFMARTRRAVLLNWKWVCLESLLLIPYYAFESKLHVEDGRFFF SDAAVRHIVTDILESLENAGEGSVLPMLRSIRLALELFTPGRLSAVVSHCSGIDFQMI WHLVRSSWILHVSCNKRRVAPIAALLSSVLHPSLFSDGDMHETDNEPGPLKWFVEKLL EEGTKSPRTIRLAALHLTGLWLSNPRTIKYYIKELKLLTLYGSVAFDEDFEAELTENH DARTEVTLLAKNPDPELTELFINTELYARVSVAVLFYKLADLTNMVGSSSGNKDYQAA LESGKLFLLELLDSVVNDKDLAKELYKKYSAIHRRKIRAWQMICVLSQFVDDDIVGEV AHCLHIALYRNNLPSVRQYLETFAINIYLKFPSLVAEQLVPTLRDYDMRPQALSSYVF VAANVIIHASKETQFRHLDELLPPILPLLTSHHHSLRGFTQVLVHQVLCKLFPPVDPR SSEFIPLEKRCFEDLKLYLAKNSDCMRLRASMEGYLDAYNPKNSATPAGIFVSRVEEI EFECVPTSLMEQVLNFLNDVREDLRCSMAKDIVTIKNESLNISEDPESIEKLSTACKE RLFTELSKDAHLDFQKKITFSNHEKQDMNSSSLLGKEEVYKQLLEMEKEDGLLDQLLK SRSMAMERIRGNRQHIILVASLLDRIPNLAGLARTSEVFKASGLAVADAKIVHDKQFQ LISVTAEKWVPIIEVPVNSVKQFLEKKKREGYSILGLEQTANSVPLDQYIYPKKTDIR WS" mobile_element 29991557..29991605 /note="source:CACAO_Mariner_E38_scaffold_2 1204 1252" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(29992636..29994185) /locus_tag="TCM_015850" /note="dbxref CacaoGD:Thecc1EG015850" mRNA complement(join(29992636..29992907,29993022..29993213, 29993537..29993815,29993912..29994185)) /locus_tag="TCM_015850" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003690001" /inference="similar to AA sequence:Phytozome:GSVIVT01003690001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc5964t6" CDS complement(join(29992848..29992907,29993022..29993213, 29993537..29993815,29993912..29993977)) /locus_tag="TCM_015850" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24179.1" /db_xref="Phytozome:GSVIVT01003690001" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UDW1" /translation="MLSSDDFSNSNSIPVDTMATKMATRCKDMAVLVTVYAEKPRRSV SSNHQHHRQHHYLHHTIKQELIKHGGAGKGYNRRAELLHYSQRLRESARSAASTALQS KPVSSNDQQASNKIVSVQRKPKCSRTPACFDNWGILIPRFLRSLTTLQAKKTGKKKQH CGSTARNSSMMRAAMKSLQMQKTWRFFSKPISMLHKHR" gene 29994701..29997825 /locus_tag="TCM_015851" /note="dbxref CacaoGD:Thecc1EG015851" mRNA join(29994701..29995277,29996539..29996763, 29997181..29997825) /locus_tag="TCM_015851" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1868t1" CDS join(29996705..29996763,29997181..29997322) /locus_tag="TCM_015851" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24180.1" /translation="MILLEFIEMFLHLTWELIHRENVADVKAKFIIEAGNHPTDPEAD EVLWQLCLPLNFQEVIFYLEHN" gene complement(29997991..30000345) /locus_tag="TCM_015852" /note="dbxref CacaoGD:Thecc1EG015852" mRNA complement(join(29997991..29998463,29998581..29998718, 29999948..30000345)) /locus_tag="TCM_015852" /product="Light harvesting-like protein 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08180.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08180.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9756t2" CDS complement(join(29998219..29998463,29998581..29998718, 29999948..30000320)) /locus_tag="TCM_015852" /codon_start=1 /product="Light harvesting-like protein 3" /protein_id="EOY24181.1" /db_xref="Phytozome:POPTR_0003s08180.1" /db_xref="TAIR:AT5G47110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9P991" /translation="MSISMASFSPPTTSLSVKPHFTHKSTFFLPLRRPIRFLSTPKSL PDNGAGVSASVAAVDDAKPKQKDPVLEEAVAESAGTNGAATSPGIDVLSKFEDPRWIG GTWDLKLFQTNGSTDWDAVIDAEVKRRKWLQDNPETTSNDDPVVFDTSTIPWWAWMKR FHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKN EDLDNIKKLIEETTFYDKQWQATWQDDTSSENN" gene 29998718..29999953 /locus_tag="TCM_015853" /note="dbxref CacaoGD:Thecc1EG015853" mRNA 29998718..29999953 /locus_tag="TCM_015853" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3770t3" CDS 29998858..29999148 /locus_tag="TCM_015853" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24182.1" /translation="MQTKILVLSKKTGLHLFFPSIHKANMNLVNNRILHWKRVLLISI LQNKRIQRWDIPKESCGNYTFFKSLTLNPHLKENIHKNNSMEGKEHLGLDCI" gene 30002331..30003475 /locus_tag="TCM_015854" /note="dbxref CacaoGD:Thecc1EG015854" mRNA join(30002331..30003219,30003452..30003475) /locus_tag="TCM_015854" /product="Ankyrin repeat family protein" /inference="alignment:exonerate- protein:2:TAIR:AT4G11000.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015855t1" /inference="similar to AA sequence:Phytozome:Glyma12g27040.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1792t2" CDS 30002646..30003218 /locus_tag="TCM_015854" /note="paralog of Thecc1EG015855t1" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY24183.1" /db_xref="Phytozome:Glyma12g27040.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6TFU7" /translation="MDKRLKKAAEEGDIDMLYALLAQDPYLLDRIDQIPIVETPLHVA ACFGRTHFALEIATLKPSLALKLNHIGLSPMHLALRNGYIHTARGLITIDPALIRVKG RERITPLHYVAETEQVDLLAEFLSVCPGSIEDLTVRCETAVHVAVKNHKSRAVKVLVG WLQRVNKEEILNWKDEDGNSLAYCNIYKST" gene 30006475..30008449 /locus_tag="TCM_015855" /note="dbxref CacaoGD:Thecc1EG015855" mRNA join(30006475..30007314,30007538..30008449) /locus_tag="TCM_015855" /product="Ankyrin repeat family protein" /inference="alignment:exonerate- protein:2:TAIR:AT4G11000.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015858t1" /inference="similar to AA sequence:Phytozome:Glyma04g06200.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9361t1" CDS join(30006739..30007314,30007538..30008323) /locus_tag="TCM_015855" /note="paralog of Thecc1EG015858t1" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY24184.1" /db_xref="Phytozome:Glyma04g06200.1" /db_xref="TAIR:AT5G15500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NAP0" /translation="MDKRLKKAAEDGDVDTLYALLAQDPYLLDRIDQIPIVETPLHVA ASFGRTHFALEIATLKPSLALKLNHIGLSPMHLALGNGYIHTARGLITVDPELIRVKG RERITPLHYVAETEHVDLLAEFLWVCPGSVEDLTVRCETAVHVAVKNHKSRAVKVLVG WLQRVNKEEILNWKDEDGNTVLHIATSTNQPKVMKSIIRHVNVNAKNLQELTAMDICL LEELQQNEVGDILRHAKAKRASSLANFTITLADYLSQELSLLEKRDKHLGLKGQNQRK SRSNIGNVILVVAILIATATYQSGPSPPGGYWQDDYDPPANNTNNLSATYLGKEGRPH RAGDMIMDPVHIFFFFTLNSIAFYASVSTILIIIMGLPYSITLYVSACFFLLAYSTSL ANNYPYTPQESLTNKVAGIIYVHVTYLFTGMIILVTLVAFLRHKRLKWRLDFLRRNLG DAL" gene 30009131..30012094 /locus_tag="TCM_015856" /note="dbxref CacaoGD:Thecc1EG015856" mRNA join(30009131..30009412,30009650..30009755, 30009920..30010345,30010616..30010711,30010870..30012094) /locus_tag="TCM_015856" /product="Ankyrin repeat family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g36110.1" /inference="similar to AA sequence:TAIR:AT4G11000.1" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(30009159..30009412,30009650..30009755, 30009920..30010345,30010616..30010711,30010870..30011124) /locus_tag="TCM_015856" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY24185.1" /db_xref="TAIR:AT4G11000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81616" /translation="MDDRLIEASQQGDIDVLYELIRVDAHVLRRIDEIMFVDTPLHIA ASSGHASFVMEMMTLMPSFAQKLNKSGLSPMHLAMLNGNLEVCHEDALKWKVKIPNRK DDQGKTVLDIAASHNQLEFIKLLSEINAQNSKGRRLSASSTIQHRVKLFLRTIVKKMQ YCGRNRDLSKASSPASRKTLTNYLRSKTSFDEKFAVFITRHKLKISDNARSALLVVVG LLVAATFPAIFSLPGSVRQGDNENPSTVAVTSSTASGRPPLAGTVELEWFGLSEYSWE VIKEECARDLGLFWRTIKRSPPCCNLFNWSSPPRWLSWGDFDDPTSRLVILLRCMNII SPDDGVVRMVDSLLLTSMYMAVVFVRAMHEGGKRNLRRLCYSTD" gene 30012695..30014923 /locus_tag="TCM_015857" /note="dbxref CacaoGD:Thecc1EG015857" mRNA join(30012695..30013360,30013544..30014923) /locus_tag="TCM_015857" /product="Ankyrin repeat protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015859t1" /inference="similar to AA sequence:Phytozome:Glyma04g06200.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS join(30012740..30013360,30013544..30014317) /locus_tag="TCM_015857" /note="paralog of Thecc1EG015859t1" /codon_start=1 /product="Ankyrin repeat protein, putative" /protein_id="EOY24186.1" /db_xref="Phytozome:Glyma04g06200.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B1Q4U3" /translation="MGDRLTAASKAGNVTALYELIEEDADVLRRVEEIMFVHTPLHIA ASDGQTCFAMEMINLMPSFSRKLNKSGFSPMHLALLNGHSKLVLLFLRADCDLVRVKG RGGMTSLHYACTKHGNDDVLANFLVACPKSIEDLTAQGETALHIAVKSNNFGALEVLV GWLRRVCHEEAFKWEINIPNWKDEHGHTILDIAVSNNMQLEASSLLYVLKLLAEINAK TSDSLTVSDILRRRQSNLGRNRVLRIQCGITDPEQNASTLASYLRSKLSIDERLAVYI TRHKMKISDDVRNILLVVAGFIIASTLQIVLNDPGGFQRDVGDSGNNNSEGTPVPSLS RLSDRAAMTVFLLSSLYNNTAFCIVNGVIGLLLPDGLFGMILLRLLPVSILCYVLWIK RSLPNGLVIYNLLVFLLAYVFAFLAFVTYSRGQNKLRQLQSNTNNFAGSYRRRKTEAA EGQANSATSADPDP" gene 30016665..30018508 /locus_tag="TCM_015858" /note="dbxref CacaoGD:Thecc1EG015858" mRNA join(30016665..30016986,30017066..30017304, 30017393..30018508) /locus_tag="TCM_015858" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g36110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015855t1" /inference="similar to AA sequence:TAIR:AT4G11000.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(30016743..30016986,30017066..30017304, 30017393..30018211) /locus_tag="TCM_015858" /note="paralog of Thecc1EG015855t1" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY24187.1" /db_xref="TAIR:AT4G11000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81616" /translation="MDEQLLIAAENGDVDALYTRLAEDPYLLDRIDRIPIVDTPFNVA ARAGKPHFAMEVANLRPSLAWKLNHVGLSPLHQVHIYAQTDDADLLAEFLSACPSSVE DTTIHCETAVHIAVKNCSIRAFKVLLGWLRRIDKEDILNWTDEDGNTALHIATSTNLT EVVKLLIKNVKNFNGLTAMDIFHLQGTLQNIEIGKILRRAKAKKASDLPSNVTLGDYL SRELTLIEKRDKYFGINSQKSPSDVRSVVLVVAILIATATYQAGLSPPGGYRQDDYNP SANNGSNNSNTSLGQGQRQHRAGQIIMGPRNLFYFFTLNSCAFYFCVWTILVVIIGLP YSITLSTSTSLLLCAYYSALDSTFPTQQSSTAFIVARALYVSLIYISAALVYSIPLAA YRKYEKLKRRVGYNKRKQDTCRSWNMKKRKLHVFVVLLELI" gene 30020245..30022434 /locus_tag="TCM_015859" /note="dbxref CacaoGD:Thecc1EG015859" mRNA join(30020245..30020825,30021423..30022434) /locus_tag="TCM_015859" /product="Ankyrin repeat protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g36110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046873t1" /inference="similar to AA sequence:Phytozome:Glyma04g06200.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS join(30020250..30020825,30021423..30022247) /locus_tag="TCM_015859" /note="paralog of Thecc1EG046873t1" /codon_start=1 /product="Ankyrin repeat protein, putative" /protein_id="EOY24188.1" /db_xref="Phytozome:Glyma04g06200.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B1Q4U3" /translation="MDNVLIEASEEEKINTLYQLFKNDAGFLKRIDETMFEDTPLHLA ASDGETCFAVEVMNLMPSFARKLNKDGLSPMHLALLKGHSELVLLLLRADRDLVRVKG RGGMTPLHYATQNGSIDLLADFLAACPKSIEDLTVQGETVLHIAVKNNMLEALEVLVG WLKRVCHEDAFSWRTDILNWRDKQGDTVLDIAAIQLLYEINARNSKGKTALGTLQHQT KMDTRVVRQMLRKTRVSKPSSPKNTKTLANYLRSKTTFDERVAVYITRQRMKIAEDLR NALLVVAGVIVAATFHAVFSPPGSFRQENGNPTIMIDGTYSPVTDASASGESPSNDAG KSVMDNGEFIIFSTFNTFVLCTVIGILGLLLSDGLFGVNMMLMLIYLLVCYAVSIFVI SPKMNIAVTDLVLLSLFIVFLYTVLLIYSRGKRKLQQLNYNANKCPKEALADEVQESG ARTASDESSAQNITSA" gene complement(30023066..30024500) /locus_tag="TCM_015860" /note="dbxref CacaoGD:Thecc1EG015860" mRNA complement(join(30023066..30023389,30023549..30023657, 30023857..30024077,30024159..30024298,30024385..30024500)) /locus_tag="TCM_015860" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015858t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(30023226..30023389,30023549..30023657, 30023857..30024077,30024159..30024298,30024385..30024431)) /locus_tag="TCM_015860" /note="paralog of Thecc1EG015858t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24189.1" /translation="MHEISPPALPILIIRRMDEQLQIAAENGDVDALYTRLAQDPYLP DRIDRIPIVDIPLPFCHGMHSDSERINHYRQSTYPSQSKGDDYTFTLLAQIDDADLLA ELLSACPSSVEDITIHCETAVHIAVKNCSIRDFEVVKLLIKNDSVNVKNFNGLTAMDI FHLQGTMQNVEIVLVVAILIATATYQARLSLLAGTGKMTTIHQQTMEPTTATRALGKG EDITVQGR" gene 30024733..30036617 /locus_tag="TCM_015861" /note="dbxref CacaoGD:Thecc1EG015861" mRNA join(30024733..30025286,30025544..30025747, 30026076..30026131,30026516..30026642,30026756..30026833, 30027084..30027197,30027279..30027391,30028705..30028875) /locus_tag="TCM_015861" /product="CLP protease R subunit 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08150.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9795t3" mRNA join(30024950..30025286,30025544..30025747, 30026076..30026131,30026516..30026642,30026756..30026833, 30027084..30027197,30027279..30027391,30036476..30036617) /locus_tag="TCM_015861" /product="CLP protease R subunit 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08150.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08150.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9489t3; alternateUTRof:Thecc1EG015861t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9795t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1018t9" CDS join(30025017..30025286,30025544..30025747, 30026076..30026131,30026516..30026642,30026756..30026833, 30027084..30027197,30027279..30027350) /locus_tag="TCM_015861" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="CLP protease R subunit 4 isoform 1" /protein_id="EOY24190.1" /db_xref="Phytozome:POPTR_0003s08150.1" /db_xref="TAIR:AT4G17040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LB10" /translation="MEVATAAASSLALHAHMLSPPTSARTVNPYRTLNSPPSTSLRAS LSTNFLSPFPATGSVAGDFSGLKLRPESLNPASLSRSKPKRGVVTMVIPFSRGSAWEQ PPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGG EKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLAAGATGNRSALPSSTIMMR QPIARFQGQATDVDLARKEVKNVKTELVKLYAKHIGKSTEQIEADIRRPKYFSPSEAV EYGIIDKVLYNERGAEDRGVVSDLKKAQLI" CDS join(30025017..30025286,30025544..30025747, 30026076..30026131,30026516..30026642,30026756..30026833, 30027084..30027197,30027279..30027350) /locus_tag="TCM_015861" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="CLP protease R subunit 4 isoform 1" /protein_id="EOY24191.1" /db_xref="Phytozome:POPTR_0003s08150.1" /db_xref="TAIR:AT4G17040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LB10" /translation="MEVATAAASSLALHAHMLSPPTSARTVNPYRTLNSPPSTSLRAS LSTNFLSPFPATGSVAGDFSGLKLRPESLNPASLSRSKPKRGVVTMVIPFSRGSAWEQ PPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGG EKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLAAGATGNRSALPSSTIMMR QPIARFQGQATDVDLARKEVKNVKTELVKLYAKHIGKSTEQIEADIRRPKYFSPSEAV EYGIIDKVLYNERGAEDRGVVSDLKKAQLI" gene 30030469..30032203 /locus_tag="TCM_015863" /note="dbxref CacaoGD:Thecc1EG015863" mRNA join(30030469..30030843,30030993..30031099, 30031421..30031732,30031826..30032203) /locus_tag="TCM_015863" /product="Expansin-like B1, BETA 3.1,EXLB1" /inference="alignment:exonerate- protein:2:ricco:27940.m000328" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015865t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08140.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9495t1" CDS join(30030708..30030843,30030993..30031099, 30031421..30031732,30031826..30032023) /locus_tag="TCM_015863" /note="paralog of Thecc1EG015865t1" /codon_start=1 /product="Expansin-like B1, BETA 3.1,EXLB1" /protein_id="EOY24192.1" /db_xref="Phytozome:POPTR_0003s08140.1" /db_xref="TAIR:AT4G17030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23547" /translation="MGFSLKFRYCLVSVMVLLPALCYSQDYFVRSRATYYGSPDCLGT PSGACGFGEYGRTVNDANVAGVSRLYKNGTGCGACYQVRCTNPQLCDDNGVNIVVTDY GEGDHTDFILSPRAYTRMARSNTAAQLFAYGVVDVEYQRIPCGYGGKKLQFKVHEHSR YPSYLAIVILYPAGRNEIQAIEIYREDCKQWIGMRRAYGAVYDMANPPQGSISLRFQV SGSAGLTWVQAPNAIPSNWEAGVAYESDIQLE" gene complement(30032869..30035296) /locus_tag="TCM_015864" /note="dbxref CacaoGD:Thecc1EG015864" mRNA complement(join(30032869..30033296,30033982..30034089, 30034417..30034598,30034746..30034825,30034988..30035296)) /locus_tag="TCM_015864" /product="COP9 signalosome, subunit CSN8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g19620.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030772t1" /inference="similar to AA sequence:Phytozome:Glyma08g19620.4" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00810t00001" mRNA complement(join(30033057..30033296,30033591..30033662, 30033982..30034089,30034417..30034598,30034746..30034825, 30034988..30035141)) /locus_tag="TCM_015864" /product="Cop9 signalosome complex subunit 8 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g19620.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030772t1" /inference="similar to AA sequence:Phytozome:Glyma08g19620.4" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00621t00001_C2; inference alignment:Newbler:10:TSA:cgbaL_g00810t00001" CDS complement(join(30033157..30033296,30033982..30034089, 30034417..30034598,30034746..30034825,30034988..30035071)) /locus_tag="TCM_015864" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030772t1" /codon_start=1 /product="COP9 signalosome, subunit CSN8 isoform 1" /protein_id="EOY24193.1" /db_xref="Phytozome:Glyma08g19620.4" /db_xref="TAIR:AT4G14110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43255" /translation="MDFSVLNGALASKSFNRIADICDNLMLQVAAEGVAFQDEWPFAI HLLGHIYVDDINSARFLWKSIPAAIKESQPELVAAWKIGQKLWTRDYAGVYDAIRGFD WSQETQVLVASFSELYTKRMFGLLLSAYSTISIQDAAQFLGMSEDDATNYALRQGWTV DPVSQMLTVKKQAIVREQKLDPGKLQCLTEYVFHLEH" CDS complement(join(30033157..30033296,30033591..30033662, 30033982..30034089,30034417..30034598,30034746..30034825, 30034988..30035071)) /locus_tag="TCM_015864" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030772t1" /codon_start=1 /product="Cop9 signalosome complex subunit 8 isoform 2" /protein_id="EOY24194.1" /db_xref="Phytozome:Glyma08g19620.4" /db_xref="TAIR:AT4G14110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43255" /translation="MDFSVLNGALASKSFNRIADICDNLMLQVAAEGVAFQDEWPFAI HLLGHIYVDDINSARFLWKSIPAAIKESQPELVAAWKIGQKLWTRDYAGVYDAIRGFD WSQETQVLVASFSELYTKRMFGLLLSAYSTISIQDAAQFLGMSEDDATNYIRTFVLPV HAKCINLETLNKFGKDALRQGWTVDPVSQMLTVKKQAIVREQKLDPGKLQCLTEYVFH LEH" gene 30038253..30039999 /locus_tag="TCM_015865" /note="dbxref CacaoGD:Thecc1EG015865" mRNA join(30038253..30038632,30038831..30038937, 30039225..30039536,30039633..30039999) /locus_tag="TCM_015865" /product="Expansin-like B1, BETA 3.1,EXLB1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015863t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08140.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc143t5" CDS join(30038491..30038632,30038831..30038937, 30039225..30039536,30039633..30039830) /locus_tag="TCM_015865" /note="paralog of Thecc1EG015863t1" /codon_start=1 /product="Expansin-like B1, BETA 3.1,EXLB1" /protein_id="EOY24195.1" /db_xref="Phytozome:POPTR_0003s08140.1" /db_xref="TAIR:AT4G17030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23547" /translation="MGFSVRFRCCLVSVMVLLPALCLCYSQDYFVRSRATYYGSPDCL GTPSGACGFGEYGRTVNDANVAGVSRLYKNGAGCGACYQVRCTNPQLCDGNGVNVVVT DYGEGDHTDFILSPRAYTRMARSNTAAQLFAYGVVDVEFQRIPCRYGGHKLQFKVQEQ SRYPSYLAIVILYQTGKNDIQAVDIWREDCKQWIGMRRAYGAVFDMASPPQGAVSLRL QVSGSAGLTWVQAPNVIPSDWKAGVAYESDIQLE" gene complement(30041933..30047100) /locus_tag="TCM_015866" /note="dbxref CacaoGD:Thecc1EG015866" mRNA complement(join(30041933..30042267,30043037..30045914, 30046598..30047100)) /locus_tag="TCM_015866" /product="SU(VAR)3-9, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400046186" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage" CDS complement(30043092..30045878) /locus_tag="TCM_015866" /codon_start=1 /product="SU(VAR)3-9, putative" /protein_id="EOY24196.1" /db_xref="TAIR:AT2G22740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BGK9" /translation="MGVSDNMLHKETLKVASCSHSEGRLGRVSTENGHFAPAPKYKQR KVSVVRNFPPGCGRLAAPIDRPSEQAVKSHPGESSLEKTSARNYRPRRGVTVVRNFPP FCGRNAPPLSEEERMKWLTSLKDKGFNLEKFVNEEKPSEKTICTDVKQVIEDVQDVNA LEGKIEGSAPTLSAEEIRSKPEELASEKMRKLCAYEASSRNDMDEDKEDMREKSIKSP CETYPNEFDSKSKQVSETSDGYVRGLEENPIHDIVIYAEDKSFETKLSDSPAFEDQLL EEDCGSQEVLLDGSIVQGLMASSTCPLPQGKVTCKRDLGGVSFKRKRKNNFILLPRAN HALVANKNEAESPEETCIKKNSSPTRPYKGLGQVVIRDKEESFQQDGLYTDDNFALRS YSYDVSLPPSCPSSVCHDNDAITTRNKVRETLRLFQAICRKLLQEEESKLNGEGKTFK RVDIQAAKILKEKGKYINTGKQIIGPVPGVEVGDEFHYFVELNIVGLHRQSQGGIDYV KQGDRIIATSVIASGGYDNDLDNSDILTYMGQGGNVMQKGKQPEDQKLERGNLALANS IFVKNPVRVIRGETRSSDLLEGRGKTYVYDGLYLVEECKQESGPHGKLVYKFKLVRIP GQPELAWKVVKKSNKSKVWEGLCAHDISQGKEVIPICAINTIDSEKPPPFVYVPHMIY PDWCHPIPPKGCDCIDGCSESGKCSCAMKNGGEIPYNHNGAIVEAKRLVYECGPTCKC PASCYNRVSQRGIKFQLEIFKTESRGWGVRSLNSIPSGSFICEYAGELLEDREAEERT GNDEYLFDIGNNYSESSLWDGLSTLMPDVHSSVCQVVQDSGFTIDAAQHGNVGRFINH SCSPNLYAQNVLYDHDDRRIPHIMLFAAENIPPLQELTYHYNYMIDQVRDENGNIKKK FCYCGSSECTGRLY" mobile_element 30048179..30048486 /note="source:CACAO_Again_on_E60_scaffold_2 2 343" /mobile_element_type="transposon:TIR/hAT" mobile_element 30048491..30048834 /note="source:CACAO_Again_on_E60_scaffold_2 3305 3648" /mobile_element_type="transposon:TIR/hAT" mobile_element 30049210..30049251 /note="source:INTACT674_F296_scaffold_6-int 4652 4693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30049221..30049261 /note="source:INTACT646_F284_scaffold_3-int 2040 2077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30049262..30052174) /note="source:CACAO_M_S_E88027_F247_scaffold_7 1 2904" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30055321..30057309 /locus_tag="TCM_015868" /note="dbxref CacaoGD:Thecc1EG015868" mRNA join(30055321..30056839,30057029..30057309) /locus_tag="TCM_015868" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:27940.m000324" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9390t1" CDS 30055373..30056671 /locus_tag="TCM_015868" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24197.1" /translation="MEPDDPFGWITELCQVSSSEESRLRRCSYFGQSDSDDSDSEQQN PLDILVAAVGITIVTPPESQQDEPENDTNTLPEDQEIFHTPPESRATSISTSVGNCND VRMIGDDLDHDGETVVVDADSAASRRAVDLGSDTDLGFSEVEVDSTQRIEANSKPDGA FGRKSEEIRVSRRGFSPNGQLSTESPSKKLKSLDFESPSVRLGTSKGGNTDEILKSLE KWNFKTVSLSPRASSELERENQQNYEANEVGEGSVRERRLDMPTDVTESEERIMDSKK NDSEGNDGETRLDFSTEDIDFHPEKGNAESENENGEGNSGRNNKSVEDIDQFRFTGGN GSNSREMKGKTDKKRALPSWANGRMGADERVEDNEREPVQADTDSETLSEDVEDSESL SEDFEEMTLLNVLMELAKACEEDRSLECLSLLEVAERKGI" gene complement(30057332..30058024) /locus_tag="TCM_015869" /note="dbxref CacaoGD:Thecc1EG015869" mRNA complement(30057332..30058024) /locus_tag="TCM_015869" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage" CDS complement(30057583..30057945) /locus_tag="TCM_015869" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24198.1" /translation="MILTSPLVPDNGHRLSKSCHIANKPSLLRSKSETRTVSIRQHRM STSCLFGYKDTKGLNLKPYSISFPILGKQAQLFFVYGFKNKLNNAPKSDQTCDQTTIP FFVEGGKGIRLKVWFGNF" gene complement(30058494..30063940) /locus_tag="TCM_015870" /note="dbxref CacaoGD:Thecc1EG015870" mRNA complement(join(30058494..30059308,30059642..30059756, 30059863..30060049,30060305..30060408,30060661..30060733, 30061084..30061513,30062080..30062442,30063628..30063779)) /locus_tag="TCM_015870" /product="GATA transcription factor, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15170.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9418t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9418t2" CDS complement(join(30059004..30059308,30059642..30059756, 30059863..30060049,30060305..30060408,30060661..30060733, 30061084..30061513,30062080..30062442,30063628..30063667)) /locus_tag="TCM_015870" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="GATA transcription factor, putative isoform 1" /protein_id="EOY24199.1" /db_xref="Phytozome:POPTR_0003s08080.1" /db_xref="TAIR:AT4G17570.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SYZ6" /translation="MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLAN YTPLHARVEPDDYEDHRASRVKSISINKNKEIKLLKRKPNHDTAVVAPDYNQGFRKFV DEDTSNRSSSGSAISNSESCAQFGSGDASDLTGPAQSNVWDSMVPSKKRTCVNRPKPS PVEKLTKDLYTILHEQSSYFSGSSEEDLLLESETPMVSVEIGHGSVLIRHPSSIAREE ESEASSLSVENKQYSMNEAYSHSSSFPTHNDSEGIKFSGHGFEKAKNPAGQGMQHEQL KRDKVQHEKSLILESHKSPLCNIDLNDILNFEEFVKHITNEDQQLLLKYLPPLDIVKL PDSLKSMFDSPQFKENLCYFQQLLEEGVFNISVPGVKAEDCKTLKRLALFNLTKSHWV ERHNVLKKYRSGTGGSAIARGPNAITSNNMIIMKRSRDSQSQNFPEARTLKSPKRVIM KTTYENKELIDNDGSCFSPRSLFALPPDGSSLMLDSLHFVDESSDHDLLLDVPSNGSF PQAELLHPTLSFGQQASTSSSSAHPHLVHP" mRNA complement(join(30059282..30059308,30059642..30060049, 30060305..30060408,30060661..30060733,30061084..30061513, 30062080..30062442,30063628..30063940)) /locus_tag="TCM_015870" /product="GATA transcription factor, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15170.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08080.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc639t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9418t2" CDS complement(join(30059857..30060049,30060305..30060408, 30060661..30060733,30061084..30061513,30062080..30062442, 30063628..30063667)) /locus_tag="TCM_015870" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="GATA transcription factor, putative isoform 2" /protein_id="EOY24200.1" /db_xref="Phytozome:POPTR_0003s08080.1" /db_xref="TAIR:AT4G17570.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SYZ6" /translation="MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLAN YTPLHARVEPDDYEDHRASRVKSISINKNKEIKLLKRKPNHDTAVVAPDYNQGFRKFV DEDTSNRSSSGSAISNSESCAQFGSGDASDLTGPAQSNVWDSMVPSKKRTCVNRPKPS PVEKLTKDLYTILHEQSSYFSGSSEEDLLLESETPMVSVEIGHGSVLIRHPSSIAREE ESEASSLSVENKQYSMNEAYSHSSSFPTHNDSEGIKFSGHGFEKAKNPAGQGMQHEQL KRDKVQHEKSLILESHKSPLCNIDLNDILNFEEFVKHITNEDQQLLLKYLPPLDIVKL PDSLKSMFDSPQFKENLCYFQQLLEEGVFNISVPGVKAEDCKTLKRLALFNLTKSHWV ERHNVLKV" mobile_element complement(30063671..30063926) /note="source:scaffold_4_CACTA_0503 9329 9559" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30068501..30070338) /note="source:scaffold_5_CACTA_0615 178 1970" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30070701..30070841 /note="source:MITE_PIF_Tourist_9 279 424" /mobile_element_type="transposon:TIR/MITE" mobile_element 30070844..30071330 /note="source:scaffold_1_CACTA_0016 1949 2477" /mobile_element_type="transposon:TIR/CACTA" gene 30071515..30073803 /locus_tag="TCM_015871" /note="dbxref CacaoGD:Thecc1EG015871" mRNA join(30071515..30071846,30072830..30073803) /locus_tag="TCM_015871" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.42 coverage" CDS join(30071664..30071846,30072830..30072877) /locus_tag="TCM_015871" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24201.1" /translation="MAPHQLPADRKSHHPFDSGFVVASWFMVHGIPTPTLEAITNAHQ KLSLQNSFFPFKCNGRQIGPKNPPQGHARSSK" gene complement(30075169..30076748) /locus_tag="TCM_015872" /note="dbxref CacaoGD:Thecc1EG015872" mRNA complement(join(30075169..30075461,30075930..30076117, 30076221..30076322,30076552..30076748)) /locus_tag="TCM_015872" /product="G10 family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g28440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041484t2" /inference="similar to AA sequence:Phytozome:Glyma08g11450.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9759t1" CDS complement(join(30075306..30075461,30075930..30076117, 30076221..30076314)) /locus_tag="TCM_015872" /note="paralog of Thecc1EG041484t2" /codon_start=1 /product="G10 family protein" /protein_id="EOY24202.1" /db_xref="Phytozome:Glyma08g11450.2" /db_xref="TAIR:AT4G21110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P41223" /translation="MPKVKTNRVKYPEGWELIEPTLRELQAKMREAENDPHDGKRKCE TLWPIFKIAHQKSRYIFDLYHRRKEISKELYEFCLDQAYADRNLIAKWKKPGYERLCC LRCMQPRDHNFATTCVCRVPKHLREEKVIECVHCGCKGCASGD" mobile_element 30076958..30077174 /note="source:scaffold_2_CACTA_0281 392 604" /mobile_element_type="transposon:TIR/CACTA" gene complement(30077506..30079660) /locus_tag="TCM_015873" /note="dbxref CacaoGD:Thecc1EG015873" mRNA complement(join(30077506..30077925,30078621..30078731, 30079194..30079340,30079537..30079660)) /locus_tag="TCM_015873" /product="Golgin subfamily A member 6-like protein 4, putative" /inference="alignment:exonerate- protein:2:ricco:28193.m000310" /inference="similar to AA sequence:ricco:28193.m000310" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07995t00001" CDS complement(join(30077641..30077925,30078621..30078731, 30079194..30079310)) /locus_tag="TCM_015873" /note="dbxref ricco:28193.m000310" /codon_start=1 /product="Golgin subfamily A member 6-like protein 4, putative" /protein_id="EOY24203.1" /db_xref="TAIR:AT4G17010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4X2" /translation="MDKLREFGRKALFYVRVLSGYEERRIRNYRLQLERRLLQAQERK AAIRKIPEQAILAEVRRMVDEMQTLNRKLEETEAAIEEYFKPIDKEAEMLMKMQLEGE EKTMKEMVAAMQQQALLEKAEAEKIANTQQQALLEKAEAEKIANTHQPDTNKSNQDAT SSSSQHAQMR" gene complement(30081349..30083370) /locus_tag="TCM_015874" /note="dbxref CacaoGD:Thecc1EG015874" mRNA complement(join(30081349..30081609,30081722..30081877, 30081971..30082157,30082521..30082612,30082709..30082852, 30083174..30083370)) /locus_tag="TCM_015874" /product="BAX inhibitor 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08070.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400045560" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05329t00001" CDS complement(join(30081556..30081609,30081722..30081877, 30081971..30082157,30082521..30082612,30082709..30082852, 30083174..30083284)) /locus_tag="TCM_015874" /codon_start=1 /product="BAX inhibitor 1" /protein_id="EOY24204.1" /db_xref="Phytozome:PGSC0003DMP400045560" /db_xref="TAIR:AT5G47120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD45" /translation="MDAFSSFFDPRSRSNWSYDTLKNFRQISPVVQTHLKRVYLTLCC ALIASAVGAYLHLLWNIGGYLTTFAGFGTIIWLLSSPPYQEQKRVSLLMTSAVFEGAS IGPLIDLAIQIDPSVLIAAFVGTALAFACFSGAAMLARRREYLYLGGLLSSGVSILLW LHFAASIFGGSTAFFMIEIYFGLLVFVGYMVVDTQDIIEKAHLGDLDYVKHALTLFTD FVAVFVRILIIMLKNSAEKSEKKKKRRSD" gene complement(30083949..30090046) /locus_tag="TCM_015875" /note="dbxref CacaoGD:Thecc1EG015875" mRNA complement(join(30083949..30084915,30085004..30085091, 30085174..30085283,30085604..30085665,30085755..30086273, 30086663..30086690,30086810..30086899,30086975..30087058, 30087132..30087225,30087342..30087405,30087524..30087586, 30087691..30087757,30087920..30088792,30089006..30089082, 30089175..30090046)) /locus_tag="TCM_015875" /product="Kinase superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400045563" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9441t3" mRNA complement(join(30084230..30084915,30085004..30085283, 30085604..30085665,30085755..30086273,30086663..30086690, 30086810..30086899,30086975..30087058,30087132..30087225, 30087342..30087405,30087524..30087586,30087691..30087757, 30087920..30088792,30089000..30089082,30089175..30089633)) /locus_tag="TCM_015875" /product="Kinase superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400045563" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1083t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9441t3" CDS complement(join(30084628..30084915,30085004..30085091, 30085174..30085283,30085604..30085665,30085755..30086273, 30086663..30086690,30086810..30086899,30086975..30087058, 30087132..30087225,30087342..30087405,30087524..30087586, 30087691..30087757,30087920..30088792,30089006..30089082, 30089175..30089532)) /locus_tag="TCM_015875" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Kinase superfamily protein, putative isoform 1" /protein_id="EOY24205.1" /db_xref="TAIR:AT4G16970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B2A2" /translation="MKSDLEQLTESLILPASESQKAWHIFSLLVFIGKPTPLWELASQ CTLFPASPALISSLCSISNSPITLSNKYFVAISSTGLSFFASYLGRNFTVAEAFTSTP IRFGGFQKLWLGKRKRDAVDYAEDKEERELALSLKRIRGYCTKVHDHLSDDINRIVEL SIPLFLVNNIVVNPYFLAETSARQLSCKVEGIENVEGEVSVEDFMQRNVSIELAASEP EPESTVPTAKPDHELEVKAVKIPPVYSTECDKQSNISVVVGGKFNVDCTTTNFRIADN EVIPEDSKKEEKLDLVSQSQGALDLSPSFNIDLNEVPPERDLESLDKDNCYHKMPSLA GEHLIVPAGASVIHSVAKISVSKEQLAEPSVKAKTNQRYMVAPVMQTPGRSLGHTKVV HTYKRKPHGERDHLSVRAAQKSNQNHRDIYVKERRGNSTSISSQDQSKPKVLPDFESY IVEEEEGSGGYGTVYRARRKNDGTLVAIKCPHANAHKHYVYNELKMLERFGGRNFVIR YEGCFKSANSDCFVLEYVEHDRPEVLKKEIDVYQLQWYAYCLFKALTNLHKQGVVHRD VKPGNFLFSRKTNKGYLIDFNLAMDLHQKYRSMDKSKLGYDVSFNRNIVPTKAIHPAN SSKILSTKLLEGINIEATKDSRLTLEPKNMKKTAGQRKARNDLSSWNKINSQGADGSG ITSAKDLSARTPSAERLREPLPCQGRKELISLLHEAMQSPNHGVSHVPAPMRKRVAAS PGKMDRQVLHLTPMPLNSNSFAIAGAGLAKNKGDGKHKRDGPCAGTKGFRAPEVLFRS QHQSPKIDIWSAGVTLLYLMIGKSPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNREPS FPEDLYGKQSLASVNLREWCQMNTKRRDFLQEIPSSLYDLVDKCLTVNPRLRITAEDA LKHEFFASIHETLRKHRAIRQGLSLESGTNKSIKVSLEKA" CDS complement(join(30085170..30085283,30085604..30085665, 30085755..30086273,30086663..30086690,30086810..30086899, 30086975..30087058,30087132..30087225,30087342..30087405, 30087524..30087586,30087691..30087757,30087920..30088792, 30089000..30089082,30089175..30089532)) /locus_tag="TCM_015875" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Kinase superfamily protein, putative isoform 2" /protein_id="EOY24206.1" /db_xref="TAIR:AT4G16970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B2A2" /translation="MKSDLEQLTESLILPASESQKAWHIFSLLVFIGKPTPLWELASQ CTLFPASPALISSLCSISNSPITLSNKYFVAISSTGLSFFASYLGRNFTVAEAFTSTP IRFGGFQKLWLGKRKRDAVDYAEDKEERELALSLKRIRGYCTKVYVHDHLSDDINRIV ELSIPLFLVNNIVVNPYFLAETSARQLSCKVEGIENVEGEVSVEDFMQRNVSIELAAS EPEPESTVPTAKPDHELEVKAVKIPPVYSTECDKQSNISVVVGGKFNVDCTTTNFRIA DNEVIPEDSKKEEKLDLVSQSQGALDLSPSFNIDLNEVPPERDLESLDKDNCYHKMPS LAGEHLIVPAGASVIHSVAKISVSKEQLAEPSVKAKTNQRYMVAPVMQTPGRSLGHTK VVHTYKRKPHGERDHLSVRAAQKSNQNHRDIYVKERRGNSTSISSQDQSKPKVLPDFE SYIVEEEEGSGGYGTVYRARRKNDGTLVAIKCPHANAHKHYVYNELKMLERFGGRNFV IRYEGCFKSANSDCFVLEYVEHDRPEVLKKEIDVYQLQWYAYCLFKALTNLHKQGVVH RDVKPGNFLFSRKTNKGYLIDFNLAMDLHQKYRSMDKSKLGYDVSFNRNIVPTKAIHP ANSSKILSTKLLEGINIEATKDSRLTLEPKNMKKTAGQRKARNDLSSWNKINSQGADG SGITSAKDLSARTPSAERLREPLPCQGRKELISLLHEAMQSPNHGVSHVPAPMRKRVA ASPGKMDRQVLHLTPMPLNSNSFAIAGAGLAKNKGDGKHKRDGPCAGTKGFRAPEVLF RSQHQSPKIDIWSAGVTLLYLMIGKSPFFGDPEQ" gene 30090274..30091941 /locus_tag="TCM_015876" /note="dbxref CacaoGD:Thecc1EG015876" mRNA 30090274..30091941 /locus_tag="TCM_015876" /product="Non-LTR retroelement reverse transcriptase" /inference="alignment:exonerate- protein:2:TAIR:AT5G42905.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027217t1" /inference="similar to AA sequence:frave:gene26026" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9422t1" CDS 30090661..30091836 /locus_tag="TCM_015876" /note="dbxref frave:gene26026; paralog of Thecc1EG027217t1" /codon_start=1 /product="Non-LTR retroelement reverse transcriptase" /protein_id="EOY24207.1" /db_xref="TAIR:AT5G42905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG26" /translation="MGFMSNLRAWVRDYIMPNGDWDKERLTFILPIEVVNQILYIIPP TLSASLDMPYWALSPSRYFTISSTYEHLWSLADSTREDNNKMWRLVWDWRGPHRVCLF LFFCLHKRILTNAEGVRHKMSSDASCPHYYGAKETCLHVLRDCPASKTLWRNILPQSG INQFFQTPLIDWLSSNLNLKNLYVFDVPWNIVFGIACWYTWKWRNLFIFEGRELSVEG RLSIIKSMAVNSHNTWSTPSIISGGMRHQEEILVGWSPPPKDWIAVNSDGVFKSAART AAAGGVLRDAHGTWIVGYACKLETSSGLRVELWGFYKGLQLAWERGFRKVKLQSDNKA MVQAISFSSVHPCSNLDLIRAIKGMLGRHWEVNISHIYREANTTADFMSNLGFDLNS" gene complement(30092007..30095665) /locus_tag="TCM_015877" /note="dbxref CacaoGD:Thecc1EG015877" mRNA complement(join(30092007..30092392,30092951..30093019, 30093869..30094003,30094109..30094224,30094452..30094533, 30094652..30094722,30095324..30095417,30095652..30095665)) /locus_tag="TCM_015877" /product="Plant VAMP (vesicle-associated membrane protein) family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400045565" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005577t1" /inference="similar to AA sequence:ricco:28193.m000307" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00815t00001" CDS complement(join(30092255..30092392,30092951..30093019, 30093869..30094003,30094109..30094224,30094452..30094533, 30094652..30094722,30095324..30095384)) /locus_tag="TCM_015877" /note="dbxref ricco:28193.m000307; paralog of Thecc1EG005577t1" /codon_start=1 /product="Plant VAMP (vesicle-associated membrane protein) family protein" /protein_id="EOY24208.1" /db_xref="TAIR:AT5G47180.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVU1" /translation="MTAGDGNQLISVHPNDLKFIFELEKQSFCDLKVVNNTEHHVAFK VKTTSPKKYFVRPNTGVVQPWDSCVIRVTLQAQQEYPPDMQCKDKFLLQSTIVPPHSD VDDLPADTFNKESGKEIEECKLKVFYMSPSSAQGNSEDEGLKSSSQQSPDSNSAVQHL KDEKDAAVRQTLQLQQELDFLKRRRQRRNDSGFSITFAAFVALIGVMVGFLLNLSLSS PPPME" mobile_element 30096860..30097013 /note="source:CACAO_PIF_E119_scaffold_3 4514 4668" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30098272..30098348 /note="source:CACAO_Mutator_E592_scaffold_3 1317 1398" /mobile_element_type="transposon:TIR/Mutator" gene complement(30098543..30101130) /locus_tag="TCM_015878" /note="dbxref CacaoGD:Thecc1EG015878" mRNA complement(join(30098543..30098823,30099963..30100096, 30100186..30100272,30100572..30100946,30101030..30101130)) /locus_tag="TCM_015878" /product="Ribosomal protein L19 family protein" /inference="alignment:exonerate-protein:2:frave:gene10797" /inference="similar to AA sequence:TAIR:AT4G17560.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05977t00001" CDS complement(join(30098715..30098823,30099963..30100096, 30100186..30100272,30100572..30100946,30101030..30101053)) /locus_tag="TCM_015878" /codon_start=1 /product="Ribosomal protein L19 family protein" /protein_id="EOY24209.1" /db_xref="TAIR:AT4G17560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXX5" /translation="MASQVLPQALHMIPINQVQSFNPVKNFGFSAFLSRGPSPLTTSK VSVSGFHLKIPVGSSSSCFARREFVVRAESNPEGVGEVEAEASENDVEEAETKAEAEE EVEAGEDGEDKVEEKPKERRKPLVKLGDIMGILNKRAIEESEKQRPVPDLRTGDIVEI KLEVPENRRRLSVYKGIVMSKQNAGIHTTIRIRRIIAGIGVEIVFPVYSPNIKEIKVV KHRKVRRARLYYLREKLPRLSTFK" gene 30101752..30106597 /locus_tag="TCM_015879" /note="dbxref CacaoGD:Thecc1EG015879" mRNA join(30101752..30101887,30102063..30103095, 30104105..30104650,30104795..30104852,30105126..30105186, 30105838..30105892,30106050..30106597) /locus_tag="TCM_015879" /product="Major facilitator superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G17550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014926t1" /inference="similar to AA sequence:frave:gene10796" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04793t00001" CDS join(30102063..30103095,30104105..30104650, 30104795..30104852,30105126..30105186,30105838..30105892, 30106050..30106102) /locus_tag="TCM_015879" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene10796; paralog of Thecc1EG014926t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 1" /protein_id="EOY24210.1" /db_xref="TAIR:AT4G17550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23596" /translation="MSRNSDTTRKTPPGILLIRSIRGKDWSLKSYRYMVLLITFIAYA SYHASRKPSSIVKSVLYPDPIKVSEGKPWPVGNVFIKEEFVSSDRNRVKHKGWYPFNG TDGTSKLGEIDVAFLACYSFGMYVAGHLGDTLDLRLFLTTGMIGSGIFVALFGMGYFW NIHIFGFYLVMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGS LLAAAVLDYGWGWSFIVPGALIASAGVLVYLFLPAYPEDIGFAGANASTPKLGSVPHN EVAQIQKGNAVDIEKSSSLKQGSGSRKGVGLSEACLIPGVIPFALCLLFSKLVAYTFL YWLPFYLSQTEIGGEYVSVKSAGNLSTLFDVGGIVGGILAGYMSDKLNARATTAASFM SAAIPSMLLYRTYGNVSRTINILLMMIVGLFVNGPYALITTAVSADLGTHSSLRGDSR ALATVTAIIDGTGSVGAALGPLLTGFLSTKGWDAVFVMLMVGALIAALLLSRLVIAEI TEKTQKPIPLSHGRQAFEVIVTEAVGIKIYFVTSKTTSYRIPTSFKQSKVITRYGVKE VSAKPTLALLLDCRFEFNGGPLRTEGYNCLDRDVD" mRNA join(30102239..30103095,30104105..30104650, 30105126..30105170,30105396..30105418) /locus_tag="TCM_015879" /product="Major facilitator superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT4G17550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014926t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15240.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1302t1; inference alignment:Newbler:10:TSA:cgbaB_g04793t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1078t4" CDS join(30102432..30103095,30104105..30104650, 30105126..30105163) /locus_tag="TCM_015879" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014926t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 2" /protein_id="EOY24211.1" /db_xref="Phytozome:POPTR_0001s15240.1" /db_xref="TAIR:AT4G17550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23596" /translation="MYVAGHLGDTLDLRLFLTTGMIGSGIFVALFGMGYFWNIHIFGF YLVMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAAAVL DYGWGWSFIVPGALIASAGVLVYLFLPAYPEDIGFAGANASTPKLGSVPHNEVAQIQK GNAVDIEKSSSLKQGSGSRKGVGLSEACLIPGVIPFALCLLFSKLVAYTFLYWLPFYL SQTEIGGEYVSVKSAGNLSTLFDVGGIVGGILAGYMSDKLNARATTAASFMSAAIPSM LLYRTYGNVSRTINILLMMIVGLFVNGPYALITTAVSADLGTHSSLRGDSRALATVTA IIDGTGSVGAALGPLLTGFLSTKGWDAVFVMLMVGALIAALLLSRLVIAEITEKTQKP IPLSHGRQAFEATGSQPLLSNQR" gene 30106750..30107524 /locus_tag="TCM_015880" /note="dbxref CacaoGD:Thecc1EG015880" mRNA join(30106750..30106870,30106978..30107524) /locus_tag="TCM_015880" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4772t1_C2" CDS join(30106779..30106870,30106978..30107221) /locus_tag="TCM_015880" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24212.1" /translation="MLSLRLTRRHLPSFQLFVLFKKFLISHHVHMFDLRYSQPEMSQQ IGGPLHGSTSGFGSRINLGLARWKKWNQGPGHRGGPPGISCANILIIHVMGSWLVWFG TRGRRKSCQ" gene 30108342..30109588 /locus_tag="TCM_015881" /note="dbxref CacaoGD:Thecc1EG015881" mRNA 30108342..30109588 /locus_tag="TCM_015881" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc747t7" CDS 30108591..30109319 /locus_tag="TCM_015881" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24213.1" /translation="MILQNFQSPCLYISSSVPLLLPIPHTTHLRPQLPAILTFSTFLC LLLRDAHTYVYVSMARSRAMLALTLVLALISCSVAQSPSAAPTMPPSSSTAPPTGGTP PTASTPPPTSMTPPPTASTPPPTSTTPPPAMTPTSAPPPATSSPPSMTPTSPMAPSPS STPMAPSPSSTPMAPSPSISSPPAPSIASPPGPAGADNPAASGPSPSTASPPSVTASP SFAASTREYSMSLLALLGGVALFV" gene complement(30111958..30115916) /locus_tag="TCM_015882" /note="dbxref CacaoGD:Thecc1EG015882" mRNA complement(join(30111958..30112371,30112637..30112675, 30113044..30113382,30113468..30113517,30114120..30114195, 30114301..30114389,30115650..30115916)) /locus_tag="TCM_015882" /product="Dynamin-like 120 kDa protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:28193.m000303" /inference="similar to AA sequence:ricco:28193.m000303" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09031t00001; inference alignment:Newbler:10:TSA:cgbaB_g09031t00001" mRNA complement(join(30112087..30112371,30112637..30112675, 30113044..30113382,30113468..30113517,30114120..30114195, 30114306..30114389,30115650..30115762)) /locus_tag="TCM_015882" /product="Dynamin-like 120 kDa protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:28193.m000303" /inference="similar to AA sequence:Phytozome:POPTR_0003s08020.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc806t2; inference alignment:Newbler:10:TSA:cgbaL_g03368t00001; inference alignment:Newbler:10:TSA:cgbaB_g09031t00001" mRNA complement(join(30112087..30112371,30112637..30112675, 30113044..30113382,30113468..30113517,30114120..30114195, 30114301..30114433,30115650..30115762)) /locus_tag="TCM_015882" /product="Dynamin-like 120 kDa protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:28193.m000303" /inference="similar to AA sequence:Phytozome:POPTR_0003s08020.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc806t3; inference alignment:Newbler:10:TSA:cgbaL_g03368t00001; inference alignment:Newbler:10:TSA:cgbaB_g09031t00001" CDS complement(join(30112192..30112371,30112637..30112675, 30113044..30113382,30113468..30113517,30114120..30114195, 30114301..30114389,30115650..30115821)) /locus_tag="TCM_015882" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28193.m000303" /codon_start=1 /product="Dynamin-like 120 kDa protein, putative isoform 1" /protein_id="EOY24214.1" /db_xref="TAIR:AT4G17540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GYP3" /translation="MESSISNSNDKIEVTNQRKGFEGIRMENPFTLKVGQVFTGFGIG CGIGIGVGRPINLGAIPMLGQVMSATRGATDAFSGVSRHVNGALRKLGAKNIEAGIGC GVGLGHGFGVGLAVKPGVVRQIQCCVIEAMTKLMMKFGMAPKLPFSEGSFPVSFQSSL TTRNEPYIQSPLGNMKQMVTKLPDPTSQGLPGPANVGRDSAYEKLSSKYPTETSYGSR TEKVLSSFLQNPVLKEDKTSLNELVGRLRSENNLLQLVLKHQRIIEELMEENQKLHQI LIEDLKIPPSKLQASYSSKIKSPCSECFHCRRKLRKNR" CDS complement(join(30112192..30112371,30112637..30112675, 30113044..30113382,30113468..30113517,30114120..30114195, 30114301..30114378)) /locus_tag="TCM_015882" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Dynamin-like 120 kDa protein, putative isoform 2" /protein_id="EOY24215.1" /db_xref="Phytozome:POPTR_0003s08020.1" /db_xref="TAIR:AT4G17540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GYP3" /translation="MLGQVMSATRGATDAFSGVSRHVNGALRKLGAKNIEAGIGCGVG LGHGFGVGLAVKPGVVRQIQCCVIEAMTKLMMKFGMAPKLPFSEGSFPVSFQSSLTTR NEPYIQSPLGNMKQMVTKLPDPTSQGLPGPANVGRDSAYEKLSSKYPTETSYGSRTEK VLSSFLQNPVLKEDKTSLNELVGRLRSENNLLQLVLKHQRIIEELMEENQKLHQILIE DLKIPPSKLQASYSSKIKSPCSECFHCRRKLRKNR" CDS complement(join(30112192..30112371,30112637..30112675, 30113044..30113382,30113468..30113517,30114120..30114195, 30114306..30114338)) /locus_tag="TCM_015882" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Dynamin-like 120 kDa protein, putative isoform 3" /protein_id="EOY24216.1" /db_xref="Phytozome:POPTR_0003s08020.1" /db_xref="TAIR:AT4G17540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GYP3" /translation="MRFLVLADMSMLRKLGAKNIEAGIGCGVGLGHGFGVGLAVKPGV VRQIQCCVIEAMTKLMMKFGMAPKLPFSEGSFPVSFQSSLTTRNEPYIQSPLGNMKQM VTKLPDPTSQGLPGPANVGRDSAYEKLSSKYPTETSYGSRTEKVLSSFLQNPVLKEDK TSLNELVGRLRSENNLLQLVLKHQRIIEELMEENQKLHQILIEDLKIPPSKLQASYSS KIKSPCSECFHCRRKLRKNR" gene complement(30116573..30118310) /locus_tag="TCM_015883" /note="dbxref CacaoGD:Thecc1EG015883" mRNA complement(join(30116573..30117710,30117817..30118310)) /locus_tag="TCM_015883" /product="HXXXD-type acyl-transferase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:28193.m000302" /inference="similar to AA sequence:ricco:28193.m000302" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04226t00001" CDS complement(join(30117078..30117710,30117817..30118281)) /locus_tag="TCM_015883" /note="dbxref ricco:28193.m000302" /codon_start=1 /product="HXXXD-type acyl-transferase family protein, putative" /protein_id="EOY24217.1" /db_xref="TAIR:AT5G02890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GYP2" /translation="MAKQTDSFVSKLSIEGIMTVTPIRITDPRQTRQVLAGEVVDPGV FQRCLNVVQYYRKENEEDSGWLVAGWIKETLGRALLEQPMICGRLRKGEQNDGDLEIV SNDCGIRLIEARIQMNLSQFLDLKRREEAEAQLVFWKDIDEESPQFSPLFYVQVTNFQ CGGYSIGISCSILLADLMLGTEFLKTWADIHNNIVNKNNERKLPLFYLPGLKNTTTSS PNIISSSSSKNSGKTMSFKINAESGSLESDWCRKAALACLEEAEHNLGSEMGAEFSLF VNESFEAIKVESCSKHGTPKPQLNLNKDFTYAKWDDFGANEVTFRQGNKPAHVSYWFT SILGGVVVVIPSLQEDANRVNIFVTIPNEKF" mobile_element complement(30120424..30121790) /note="source:CACAO_PIF_E144_scaffold_10 1203 2391" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(30122121..30122390) /note="source:scaffold_2_CACTA_0244 14283 14533" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30122245..30122487 /note="source:CACAO_Helitron_E81_scaffold_3 1215 1451" /mobile_element_type="transposon:Helitron" mobile_element 30122435..30122527 /note="source:scaffold_5_CACTA_0614 3376 3466" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30124523..30124618 /note="source:CACAO_Again_on_E170_scaffold_7 6058 6156" /mobile_element_type="transposon:TIR/hAT" gene 30124698..30127206 /locus_tag="TCM_015884" /note="dbxref CacaoGD:Thecc1EG015884" mRNA join(30124698..30125128,30125392..30125538, 30125671..30125736,30125867..30126029,30126159..30126387, 30126485..30127206) /locus_tag="TCM_015884" /product="FAD/NAD(P)-binding oxidoreductase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28193.m000300" /inference="similar to AA sequence:Phytozome:GSVIVT01007345001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9446t2" mRNA join(30124780..30125128,30125392..30125538, 30125671..30125736,30125867..30126029,30126487..30127194) /locus_tag="TCM_015884" /product="FAD/NAD(P)-binding oxidoreductase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:28193.m000300" /inference="similar to AA sequence:Phytozome:GSVIVT01007345001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc395t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9446t2" CDS join(30124896..30125128,30125392..30125538, 30125671..30125736,30125867..30126029,30126159..30126387, 30126485..30126996) /locus_tag="TCM_015884" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="FAD/NAD(P)-binding oxidoreductase family protein isoform 1" /protein_id="EOY24218.1" /db_xref="Phytozome:GSVIVT01007345001" /db_xref="TAIR:AT2G35660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSN8" /translation="MAIATRSPLRLNSPMSRPSLYNSQRRVFFQSHAWFRAQPRTKPI CASAIKAEAGAQKEDIVIVGAGIAGLATAVSLRRLGIGSLVLEQAESLRTGGSSLTLF KNGWRVLDAIGVADSLRSQFLEIQGMVVKSEDGRELRSFKFKDEDQTQEVRAVERRIL LETLANQLPPEAVQFSSKLAKIETSENGETLLELTNGTRLLAKIVVGCDGIRSTIAKW MGFSEPKYAGHCALRGLGYYPKGQPFAPRVSYMYGRGLRAGYVPVSPTKVYWFICYNS PSAGPKITDPILLKKLAKELIKNWPPELLKLIDLTPDEAISKAPLVDRWLWPGISPPA SAGKVVLVGDAWHPMTPNLGQGACCALEDAVILTRKLADGIKSGPESIEGALRAYGEE RWPRIFPITIRANLVGSLLQWDDPLVCSVRDNVVIPKLVRLGSMLEHTNFECEPLET" CDS join(30124896..30125128,30125392..30125538, 30125671..30125736,30125867..30126029,30126487..30126996) /locus_tag="TCM_015884" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="FAD/NAD(P)-binding oxidoreductase family protein isoform 2" /protein_id="EOY24219.1" /db_xref="Phytozome:GSVIVT01007345001" /db_xref="TAIR:AT2G35660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSN8" /translation="MAIATRSPLRLNSPMSRPSLYNSQRRVFFQSHAWFRAQPRTKPI CASAIKAEAGAQKEDIVIVGAGIAGLATAVSLRRLGIGSLVLEQAESLRTGGSSLTLF KNGWRVLDAIGVADSLRSQFLEIQGMVVKSEDGRELRSFKFKDEDQTQEVRAVERRIL LETLANQLPPEAVQFSSKLAKIETSENGETLLELTNGTRLLAKPKITDPILLKKLAKE LIKNWPPELLKLIDLTPDEAISKAPLVDRWLWPGISPPASAGKVVLVGDAWHPMTPNL GQGACCALEDAVILTRKLADGIKSGPESIEGALRAYGEERWPRIFPITIRANLVGSLL QWDDPLVCSVRDNVVIPKLVRLGSMLEHTNFECEPLET" gene complement(30127222..30129116) /locus_tag="TCM_015885" /note="dbxref CacaoGD:Thecc1EG015885" mRNA complement(join(30127222..30127939,30128494..30129116)) /locus_tag="TCM_015885" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007344001" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08990t00001" CDS complement(30128595..30128918) /locus_tag="TCM_015885" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24220.1" /translation="MVLFCHFAAPPKLAKNRALSWGVSPSVGTRNEDRRSHFYWNLSL SLSLKQKRNGPKDASIIERFPSRRRVLHQLNTIRITEFEATELRDGFPDPATTAHIQS PLVRR" gene 30131266..30133554 /locus_tag="TCM_015886" /note="dbxref CacaoGD:Thecc1EG015886" mRNA join(30131266..30131399,30131966..30132038, 30132154..30132201,30132293..30132340,30132652..30132723, 30132815..30132970,30133069..30133172,30133326..30133554) /locus_tag="TCM_015886" /product="Ras 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005722t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07970.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9773t1" CDS join(30131386..30131399,30131966..30132038, 30132154..30132201,30132293..30132340,30132652..30132723, 30132815..30132970,30133069..30133172,30133326..30133422) /locus_tag="TCM_015886" /note="paralog of Thecc1EG005722t1" /codon_start=1 /product="Ras 5" /protein_id="EOY24221.1" /db_xref="Phytozome:POPTR_0003s07970.1" /db_xref="TAIR:AT1G02130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PBJ4" /translation="MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVD FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW LNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEE AFMAMAASIKNRMASQPAMNNARPPTVQIRGQPVNQKSGCCSS" gene complement(30133931..30136744) /locus_tag="TCM_015887" /note="dbxref CacaoGD:Thecc1EG015887" mRNA complement(30133931..30136744) /locus_tag="TCM_015887" /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012708t3" /inference="similar to AA sequence:Phytozome:Glyma04g35630.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(30134143..30136200) /locus_tag="TCM_015887" /note="paralog of Thecc1EG012708t3" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="EOY24222.1" /db_xref="Phytozome:Glyma04g35630.1" /db_xref="TAIR:AT4G16835.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M4P3" /translation="MFHYLKNTRKQPTLPFLKIFPPTKHPLSPFSTFTILNPNVNPNH EAVPANFPSHSPHEPHLVPTSNITRKPPTAPSLDKSPTLDQQDHNYIISSNKVITSYI RSGDLDSALRVFNTMTVKTTVTWNSILAGYSKKPGKITQAQKLFDKIPEKDTVSYNIM LACYVHNSDMETAWSFFNSMPFKDSASWNTMISGFAQKGLMGKARELFSATPEKNSVT WSAMISGYVECGELELAVEFFELVDVKSVVAWTAMISGYMKFGKIEKAERLFKEMPVK NLVTWNAMISGYVENCRAEDGLKLFRMMLRYGIRPNNSSLSSVLLGCSELSALQFGKQ VHQLVCKSLLRDDTTADTSLISMYCKCGALDDAWKLFLEIKKKDVVSWNAMISGYAQH GAGEKALHLFEEMRDEGVRPDWITFVAVLLACNHAGLVDMGIRYFDSMLKDYGVEARP DHYTCMVDLLGRAGKLVEAVNLIKRMPFKPHCAIYGTLLGACRIHKNLEMAEFAAENL LNLDPKNAAGYVQLANIYAAMNKWDHVARVRQSMKDNKVVKTPGYSWIEIKSVVHEFR SGDRVHPDLASIHEKLRELEKKLKFAGYVPDLEFALHDVGEEQKAQLLLRHSEKLAIA FGLIKVPSGGPIRVFKNLRVCGDCHRAIKYISAIETREIIVRDTVRFHHFKDGSCSCG DYW" gene complement(30136894..30140460) /locus_tag="TCM_015888" /note="dbxref CacaoGD:Thecc1EG015888" mRNA complement(join(30136894..30137423,30137662..30137715, 30137804..30137959,30138515..30138647,30138809..30138874, 30139001..30139307,30140173..30140460)) /locus_tag="TCM_015888" /product="Hyaluronan / mRNA binding family" /inference="alignment:exonerate- protein:2:ricco:28193.m000296" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005721t3" /inference="similar to AA sequence:ricco:28193.m000296" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9817t2" CDS complement(join(30137247..30137423,30137662..30137715, 30137804..30137959,30138515..30138647,30138809..30138874, 30139001..30139307,30140173..30140356)) /locus_tag="TCM_015888" /note="dbxref ricco:28193.m000296; paralog of Thecc1EG005721t3" /codon_start=1 /product="Hyaluronan / mRNA binding family" /protein_id="EOY24223.1" /db_xref="TAIR:AT4G17520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LB56" /translation="MATMNPFDLLGDDIEDPSLLIAAAQQQKLEKPKKAPASAPAQAQ PAKPAKLPTKPTPPAQAVREAKSEPGRGGGRGGGRGGGRGGGRGGSGFNRDSNVGDNS NGFSGGYRPSEEGEGKLSERRGYGGPRGSFRGGRRGGFSNEESGEGERPRRQYDRRSG TGRGNEFKRDGAGRGNWGTSTDEIAPETEVNVPENEKNVGAEKQSGEEDVVDASKENA ANEPEEKEPENKEMTLEEYEKILDEKRKALLALKTEERKVDVKEFESMQQLSNKKSND DIFIKLGSEKDKRKDADKEERVKKSVSINEFLKPAEGERYYGPGRGRGRGRGPRGGYG GIAGSNVPAPAIEDRGQFPTLGGK" mobile_element complement(30137797..30137845) /note="source:CACAO_M_S_E85177_F5_scaffold_7 5141 5190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30138694..30138752 /note="source:CACAO_M_E47_F305_scaffold_1 1278 1328" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(30144220..30146356) /locus_tag="TCM_015889" /note="dbxref CacaoGD:Thecc1EG015889" mRNA complement(30144220..30146356) /locus_tag="TCM_015889" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:28192.m000243" /inference="similar to AA sequence:ricco:28192.m000243" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9771t1" CDS complement(30144512..30146095) /locus_tag="TCM_015889" /note="dbxref ricco:28192.m000243" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY24224.1" /db_xref="TAIR:AT4G16820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GYN6" /translation="MQIGISSTLPAQNLHVYQARRANFKCQKSPLNPLTKPHPCSQKP CSSASSTELARQHLSNLDKLLQKTNQADPEQVIKAPTNGSIETKGKGLLEGLNLSRLW PEMKAAEEMSPRHLNRLQRLLSKTMEYSPRNNLGSRWREYHGCNDWSGLLDPLDENLR REVVRYGEFVQAAYHGFHSNPAMSTDEAPLPRHVALPDRSYKVTKSLYATSSVGLPKW VDDMAPNLGWMTQRSSWIGFVAVCDDKREIQRMGRRDIVIALRGTATCLEWAENFRAQ LVQIPESRDPTQKVECGFLSLHKTSGAHVPSLAESVVEEVRRLIEMYQGETLSITITG HSLGAALSLLVADELSSCAPQVPPIAVFSFGGPRVGNKGFVDRLNDKNVKVLRIVNNQ DVITRVPGVFIGEGSQQQQRNESFSRVFNMLDNNNPWAYSHVGTELRVDTKMSPYLKP NADVACCHDLEAYLHLVDGFLSSNCPFRANAKRSLARLVHDQRSNVKQLYTHKALSLN LERDGLSFPVPSCLPSPSG" mobile_element 30146992..30147107 /note="source:scaffold_9_CACTA_0942 5247 5360" /mobile_element_type="transposon:TIR/CACTA" gene 30154001..30161351 /locus_tag="TCM_015891" /note="dbxref CacaoGD:Thecc1EG015891" mRNA join(30154001..30154113,30155017..30155188, 30155514..30155569,30156347..30156411,30156530..30156582, 30156971..30157024,30157107..30157166,30157539..30157585, 30157675..30157808,30158011..30158269,30158518..30158566, 30159100..30159183,30160104..30160183,30160373..30160462, 30160903..30161250) /locus_tag="TCM_015891" /product="Polycomb protein embryonic flower, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g41460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014839t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07930.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05466t00001; inference alignment:Newbler:10:TSA:cgbaP2_g05466t00001" CDS join(30155063..30155188,30155514..30155569, 30156347..30156411,30156530..30156582,30156971..30157024, 30157107..30157166,30157539..30157585,30157675..30157808, 30158011..30158269,30158518..30158566,30159100..30159183, 30160104..30160183,30160373..30160462,30160903..30161026) /locus_tag="TCM_015891" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014839t1" /codon_start=1 /product="Polycomb protein embryonic flower, putative isoform 1" /protein_id="EOY24225.1" /db_xref="Phytozome:POPTR_0003s07930.1" /db_xref="TAIR:AT4G16845.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T283" /translation="MCCQNSCMHLSAEESDSAAENLLVYCKPVELYNILHRRALHNPS FLRRCLKYKIQARHRRRLRAGIVIFNYKDYGNMLQKTEVTEDFSCPFCLMRCARFKGL RYHLCSSHDLFNFDFWVTEEYQVVNVSVKIDIMVSETVASGVDPRVETFCFCSKPRRR WATNPLQSEKNVNVQFLELDSPKMASESRQNGFLEKDDGERVSKSIPVERDMQNGWHG VENYGSDYTSATECVAPVATSCNGPGVSIAMAQSPVEPDCIKSLSANDTAVPPVKQEI MAERSEPRNRMLLVKRQFFHSHRVQPMAIDQVMSDRDSEDEVDDDIADLEDRRMLDDF VDVSKDEKQLMHLWNSFVRKQRVLADGHVPWACEAFSKLHGQELVQSPALFWCWRLFM IKLWNHGLLDAGAMNNCSMILQRCQNEGLDAMKS" mRNA join(30156197..30156411,30156530..30156582, 30156971..30157024,30157107..30157166,30157539..30157585, 30157675..30157808,30158011..30158269,30158518..30158566, 30159100..30159183,30160104..30160183,30160373..30160462, 30160903..30161351) /locus_tag="TCM_015891" /product="Polycomb protein embryonic flower, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g41460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014839t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07930.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1182t9; inference alignment:Newbler:10:TSA:cgbaP2_g05466t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc952t14_C2" CDS join(30156303..30156411,30156530..30156582, 30156971..30157024,30157107..30157166,30157539..30157585, 30157675..30157808,30158011..30158269,30158518..30158566, 30159100..30159183,30160104..30160183,30160373..30160462, 30160903..30161026) /locus_tag="TCM_015891" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014839t1" /codon_start=1 /product="Polycomb protein embryonic flower, putative isoform 2" /protein_id="EOY24226.1" /db_xref="Phytozome:POPTR_0003s07930.1" /db_xref="TAIR:AT5G51230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T283" /translation="MTYYSVNVRRICLCRLRAGIVIFNYKDYGNMLQKTEVTEDFSCP FCLMRCARFKGLRYHLCSSHDLFNFDFWVTEEYQVVNVSVKIDIMVSETVASGVDPRV ETFCFCSKPRRRWATNPLQSEKNVNVQFLELDSPKMASESRQNGFLEKDDGERVSKSI PVERDMQNGWHGVENYGSDYTSATECVAPVATSCNGPGVSIAMAQSPVEPDCIKSLSA NDTAVPPVKQEIMAERSEPRNRMLLVKRQFFHSHRVQPMAIDQVMSDRDSEDEVDDDI ADLEDRRMLDDFVDVSKDEKQLMHLWNSFVRKQRVLADGHVPWACEAFSKLHGQELVQ SPALFWCWRLFMIKLWNHGLLDAGAMNNCSMILQRCQNEGLDAMKS" gene complement(30161450..30165996) /locus_tag="TCM_015893" /note="dbxref CacaoGD:Thecc1EG015893" mRNA complement(join(30161450..30162638,30162783..30162882, 30162986..30163072,30163167..30163405,30163500..30163576, 30163706..30163808,30163883..30164744,30165858..30165996)) /locus_tag="TCM_015893" /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004792001" /inference="similar to AA sequence:Phytozome:GSVIVT01017972001" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2936t1" CDS complement(join(30162390..30162638,30162783..30162882, 30162986..30163072,30163167..30163405,30163500..30163576, 30163706..30163808,30163883..30164689)) /locus_tag="TCM_015893" /codon_start=1 /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein, putative" /protein_id="EOY24227.1" /db_xref="Phytozome:GSVIVT01017972001" /db_xref="TAIR:AT4G14920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUT4" /translation="MDLERSMNYNLRKRRVLNKKIANLGSTSGSDNESNDSTHSDPDY GKPMPARNNGRPSGATQRGGGIRIGDTALASSSKNAATAQKRRPGRPPKAKANGAEDR PGNIEERSTRRKRKDISQSPVECIYKRTVLAWLISLGIVGQHEKVWYVDEDSGRILAE GKIRAEGVVCDCCSRVITVGDFEIHAGRDTKKPYQHILLASSRISLLECQIEAWLDRM EEGNRAYNNVQPAPEATDKSDDACMVCADGGNLVCCERCPSTCHSSCIFLGNNISGDE WLCPYCVCKYCAGGDGTLKKCTHCEKQYHCKCGGEKLDLNSPTSLFCGDSCKQIYEGL QSMLGVRNDLVGGLSWTLLQRTEPIFTAHAGVDYNRVVVNSKIAVAWMVMNECFVSSI DRHSGANVVQSIVYNIGSNLTRLNFSGFYTAVLEKNDEIICAASVRVHGKRLAEMPFI GTRTEFRRRGMARTLENCVESALCDLKVEKLVIPSLQQLAGMWMEKYLFSHIEEDRLK MELSQYNTVTFPSSVVRLQKTLSTLPDLNGGPSPSETNEGSLNAI" mobile_element complement(30167569..30168525) /note="source:CACAO_MITE75_scaffold_4 2 968" /mobile_element_type="transposon:TIR/MITE" gene 30169308..30176118 /locus_tag="TCM_015894" /note="dbxref CacaoGD:Thecc1EG015894" mRNA join(30169308..30169412,30169641..30169671, 30169772..30169986,30170159..30170195,30170358..30170636, 30170834..30171117,30171403..30172092,30172166..30172255, 30172765..30172852,30172942..30173111,30173326..30173400, 30173823..30173913,30174041..30174092,30174208..30174311, 30174396..30174472,30174869..30175084,30175789..30176118) /locus_tag="TCM_015894" /product="ATP-dependent caseinolytic protease/crotonase family protein" /inference="alignment:exonerate-protein:2:frave:gene02567" /inference="similar to AA sequence:Phytozome:GSVIVT01004793001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9471t4" CDS join(30169320..30169412,30169641..30169671, 30169772..30169986,30170159..30170195,30170358..30170636, 30170834..30171117,30171403..30172092,30172166..30172255, 30172765..30172852,30172942..30173111,30173326..30173400, 30173823..30173913,30174041..30174092,30174208..30174311, 30174396..30174472,30174869..30175045) /locus_tag="TCM_015894" /codon_start=1 /product="ATP-dependent caseinolytic protease/crotonase family protein" /protein_id="EOY24228.1" /db_xref="Phytozome:GSVIVT01004793001" /db_xref="TAIR:AT4G16800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JML5" /translation="MKEKKPLLIRLCFFSRKGEGKRVLMEDFKSEISGSSCSIPSEPP DIRNWYSSYKYESFVLDTCENFGGTFSEERESDKDELVIGEINREKEENFDGSGEIRK ADEHGSLNSNEVQDTLHSPSILSEPPDIRNWYSSYVYESPLLDTSDGFRSYVSRESEC EKDELAIGESIKDEAANLGQETKSSCKPDASEKICSTKLVKCSSSLVDRKNESHSLFS GPPDLGFWFADYVYESPVLDTSDEFRDTLSEEREPNEDEFAVEERKREKQEKVNTTTK TRHRNEVGVVKKMCANEFRKCNSSLRNDEQENMSISKDLHCAGGKENLTWKGDLCFEK ILDPILEVKQVRGSTINSNKGVENSGFNGGDFLSKLEKADSQSTDISRSAGKTDRKSS KKLINTRDSIERSPETKVDLASHDQSQDFDQVSGGYWRKPTHGSNDKENEGKDIAKNG FVTTSKNKFTRRNGENSLGGRREVVLQCSRNKSSNITGGQRGAVVKRKVLAETTNVQR CEAMEITGKWRCPQKSKPHRGPPLKQLRLEQWIRRPELPYVQKLQITLYGHIPNQTKG IPISNYKLQFQTLRTLILEPSLSESVKLRRLPGSDSGIVEVNLERPGARNAIGNDMLR GLRHAFEAIDGDSSAHVVLISSSVPNVFCAGADLKERKKMTASEVHSYVNYLRSTFSL IEELQIPTIAVIEGAALGGGLEMALSCDLRICGENAMLGLPETGLAIIPGAGGTQRLP RLVGQSIAKELIFTARRIGGRDAMSMGLVNYCVPAGEAHPKGLEIAREINQKGPIAIR MAKRAINEGLERDMTSALDLEEECYEQLLNTKDRLEGLAAFAEKRKPRYNGE" gene 30175055..30177935 /locus_tag="TCM_015895" /note="dbxref CacaoGD:Thecc1EG015895" mRNA join(30175055..30175084,30175789..30176199, 30176537..30177800) /locus_tag="TCM_015895" /product="DNA-binding protein RAV1, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:28192.m000250" /inference="similar to AA sequence:ricco:28192.m000250" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc473t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc473t10" mRNA join(30176355..30176492,30176665..30177935) /locus_tag="TCM_015895" /product="DNA-binding protein RAV1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:28192.m000250" /inference="similar to AA sequence:ricco:28192.m000250" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc473t10" CDS 30176621..30177562 /locus_tag="TCM_015895" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28192.m000250" /codon_start=1 /product="DNA-binding protein RAV1, putative isoform 2" /protein_id="EOY24230.1" /db_xref="TAIR:AT1G50680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T287" /translation="MVGSSNSNKIIPCRRNSQYRMRSSCSSGRMSSSRFRGVLALNNS KWGARISLKYRAYWLGTYQVEEEAAIAYDRAALKLHRSDSPLNFPWKIYTAQEKLFQS SYSNEEIMSMIKDKTYTSNLTSFLARESLVRRSMSGCLINAKGISHQLLFHKKLTQTD VAQIKGFHIPKEYALQYLPPLGNSSDGGQMRNDSVDLTFYDKFYRPWTFRYSYWCTTK TFLFTKGWRHFVAMNNLNIADTIMVYGCAFVEEGQSRNFYMIDIHRNDAANYIVGRDA EQGIGTQPNIVDNGAHVDGISGVERKNGVKLFGIQIA" CDS 30176681..30177562 /locus_tag="TCM_015895" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28192.m000250" /codon_start=1 /product="DNA-binding protein RAV1, putative isoform 1" /protein_id="EOY24229.1" /db_xref="TAIR:AT1G50680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T287" /translation="MRSSCSSGRMSSSRFRGVLALNNSKWGARISLKYRAYWLGTYQV EEEAAIAYDRAALKLHRSDSPLNFPWKIYTAQEKLFQSSYSNEEIMSMIKDKTYTSNL TSFLARESLVRRSMSGCLINAKGISHQLLFHKKLTQTDVAQIKGFHIPKEYALQYLPP LGNSSDGGQMRNDSVDLTFYDKFYRPWTFRYSYWCTTKTFLFTKGWRHFVAMNNLNIA DTIMVYGCAFVEEGQSRNFYMIDIHRNDAANYIVGRDAEQGIGTQPNIVDNGAHVDGI SGVERKNGVKLFGIQIA" mobile_element 30177804..30177943 /note="source:scaffold_1_CACTA_0008 14043 14187" /mobile_element_type="transposon:TIR/CACTA" gene 30178258..30181565 /locus_tag="TCM_015896" /note="dbxref CacaoGD:Thecc1EG015896" mRNA join(30178258..30178438,30178698..30178829, 30178961..30178999,30179506..30179611,30179839..30179897, 30180002..30180076,30180296..30180344,30180507..30180583, 30181128..30181230,30181380..30181565) /locus_tag="TCM_015896" /product="Ubiquitin C-terminal hydrolase 3" /inference="alignment:exonerate- protein:2:ricco:28192.m000251" /inference="similar to AA sequence:Phytozome:Glyma05g05190.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00209t00004" CDS join(30178364..30178438,30178698..30178829, 30178961..30178999,30179506..30179611,30179839..30179897, 30180002..30180076,30180296..30180344,30180507..30180583, 30181128..30181226) /locus_tag="TCM_015896" /codon_start=1 /product="Ubiquitin C-terminal hydrolase 3" /protein_id="EOY24231.1" /db_xref="Phytozome:Glyma05g05190.1" /db_xref="TAIR:AT4G17510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6H7H9" /translation="MATPDESPSAKRWLPLEANPDVMNQFLWGLGLPEDEAECCDVYG LEDELLAMVPQPVLAVLFLFPITSQTEEERLEQENEKRDASNKVYFMKQTVGNACGTI GLLHSVGNITSEIKLQEGSFLDRFFKSTASMDALERAAFIEKDREMEVAHSVAATAGE TEASDNVDTHFICFTCVDGELYELDGRKSGPISHGASSPSSLLQDAAKVIRGMIQKNP ESLNFNVIALSKKVGGGF" gene complement(30181729..30182895) /locus_tag="TCM_015897" /note="dbxref CacaoGD:Thecc1EG015897" mRNA complement(join(30181729..30182052,30182149..30182334, 30182497..30182637,30182748..30182895)) /locus_tag="TCM_015897" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.74 coverage" CDS complement(join(30181980..30182052,30182149..30182334, 30182497..30182637,30182748..30182824)) /locus_tag="TCM_015897" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24232.1" /translation="MDEEETPVSEGYLSKYGRKLIQVIGRRKGGRSAHKELEEAMYQL KEEHGWDSFGIVYNWASWLKKGKWNFELNDLPIIHCDVKPRNRLLDEYFTVRISQSGI RTMISGTRGYVAPEWFKNVPITAKVDVYSFGVRVDVEARDDEATTADKDRRCKWVP" mobile_element 30185404..30186076 /note="source:CACAO_on_E373_scaffold_1 7 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(30186039..30186081) /note="source:CACAO_Mariner_E220_scaffold_9 14453 14495" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(30186219..30187603) /locus_tag="TCM_015898" /note="dbxref CacaoGD:Thecc1EG015898" mRNA complement(30186219..30187603) /locus_tag="TCM_015898" /product="AP2/ERF domain-containing transcription factor, putative" /inference="alignment:exonerate- protein:2:ricco:28192.m000255" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014845t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07910.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9584t1" CDS complement(30186680..30187495) /locus_tag="TCM_015898" /note="paralog of Thecc1EG014845t1" /codon_start=1 /product="AP2/ERF domain-containing transcription factor, putative" /protein_id="EOY24233.1" /db_xref="Phytozome:POPTR_0003s07910.1" /db_xref="TAIR:AT4G17500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NBC4" /translation="MEMYQSTIDSDLAMLESIRRHLLGESSDLRLTASTDCTTAPPMF CRSSSFSRLYPCLTETWGDLPLKEDDSEDMLVFGFLRDALTEGWAPSDNSSTNFPPIK PEPQEILTETPVKKVATTEAATAVPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGA RVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRASPEPSS SSSSGSENGSPKRRRKVAASAPVVAQAGLDMGSGAEVKYQVESCTHGEQLLVS" mobile_element complement(30189289..30189703) /note="source:CACAO_PIF_E8_scaffold_1 2263 2673" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 30192646..30193070 /locus_tag="TCM_015899" /note="dbxref CacaoGD:Thecc1EG015899" mRNA 30192646..30193070 /locus_tag="TCM_015899" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015900t3" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 30192712..30192990 /locus_tag="TCM_015899" /note="paralog of Thecc1EG015900t3" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24234.1" /translation="MSVGRKLVNYVDHAYLFESSKGDLFSIKKEIDIEDYHCFAHFSK SFKVFKLVLDDQSGELVEEKEVKDIDEDVVFVGDNQTLTVSALDFLEG" gene complement(30194037..30202100) /locus_tag="TCM_015900" /note="dbxref CacaoGD:Thecc1EG015900" mRNA complement(join(30194037..30194309,30197107..30197579, 30199889..30200945,30201138..30201187,30201285..30201442, 30201599..30202100)) /locus_tag="TCM_015900" /product="Cyclin F-box isoform 1" /inference="alignment:exonerate- protein:2:frave:gene04568.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015901t1" /inference="similar to AA sequence:frave:gene04568" /note="transcript variant 3; alternatively spliced; quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:PASA:2:TSA:puevd3b015366t1a3; alternateUTRof:Thecc1EG015900t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9530t2" mRNA complement(join(30194037..30194309,30195790..30195902, 30197107..30197579,30199889..30200945,30201138..30201187, 30201285..30201442,30201599..30202100)) /locus_tag="TCM_015900" /product="Cyclin F-box isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015901t1" /inference="similar to AA sequence:frave:gene04568" /note="transcript variant 2; alternatively spliced; quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b015366t1a2; alternateUTRof:Thecc1EG015900t1" mRNA complement(join(30194039..30194309,30194886..30195033, 30195790..30195902,30197107..30197579,30199889..30200945, 30201138..30201187,30201285..30201442,30201599..30202100)) /locus_tag="TCM_015900" /product="Cyclin F-box isoform 1" /inference="alignment:exonerate- protein:2:frave:gene04568.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015901t1" /inference="similar to AA sequence:frave:gene04568" /note="transcript variant 1; alternatively spliced; quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9530t2" CDS complement(join(30197257..30197579,30199889..30200945, 30201138..30201187,30201285..30201442,30201599..30201603)) /locus_tag="TCM_015900" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene04568; paralog of Thecc1EG015901t1" /codon_start=1 /product="Cyclin F-box isoform 1" /protein_id="EOY24235.1" /translation="MISRHKKERKRKKNWSSQSFRLKTTSVEQKRWGKQDLVSNQIFN GHKTLEFYFNIVLGQLKSIPNLNRKSLKSMENAEVDWEKLPTLCLFLVLDKLGVPSNL VRFGVVCKYWYSVFNNFLNSKRRSSPNLIPMLLIPTRMSNRVRQLCSLQAKTKIYNIE LPKSHIKRSCGSTYGWLAAVDKNMVITLLNPFKDGVTIDLPEIEVPNPGYPYEYNEYD VHKVILSADPLSYPDSYVVVVIYSMRSKLAFYKSEQKSWIYLDKDLEAFTDVIFYKNL VYAIGTRSLIISFDVNHSLDNNLKPKVKILMSMRQGLEDYVDHAYLVESSRGNLFSIK KEIDVEEYHCCAHFTKSFKVFKLILDDQSGELLEEKEVKNIDGDVVFVGDNQTLTVSA LDFPEAQPNSIYFTDDYFIYTTYKPFGPRDNAAKPNNLLPPVWPSSISATIPISQSQF FLQGPNNPNPTKFSSPTKPKYFFFQNPDNFFPQDPNIQLQQVLNRTDSSHRQPQNQID TTASDQVPKGVRERTDQAVKQA" CDS complement(join(30197257..30197579,30199889..30200945, 30201138..30201187,30201285..30201442,30201599..30201603)) /locus_tag="TCM_015900" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene04568; paralog of Thecc1EG015901t1" /codon_start=1 /product="Cyclin F-box isoform 1" /protein_id="EOY24236.1" /translation="MISRHKKERKRKKNWSSQSFRLKTTSVEQKRWGKQDLVSNQIFN GHKTLEFYFNIVLGQLKSIPNLNRKSLKSMENAEVDWEKLPTLCLFLVLDKLGVPSNL VRFGVVCKYWYSVFNNFLNSKRRSSPNLIPMLLIPTRMSNRVRQLCSLQAKTKIYNIE LPKSHIKRSCGSTYGWLAAVDKNMVITLLNPFKDGVTIDLPEIEVPNPGYPYEYNEYD VHKVILSADPLSYPDSYVVVVIYSMRSKLAFYKSEQKSWIYLDKDLEAFTDVIFYKNL VYAIGTRSLIISFDVNHSLDNNLKPKVKILMSMRQGLEDYVDHAYLVESSRGNLFSIK KEIDVEEYHCCAHFTKSFKVFKLILDDQSGELLEEKEVKNIDGDVVFVGDNQTLTVSA LDFPEAQPNSIYFTDDYFIYTTYKPFGPRDNAAKPNNLLPPVWPSSISATIPISQSQF FLQGPNNPNPTKFSSPTKPKYFFFQNPDNFFPQDPNIQLQQVLNRTDSSHRQPQNQID TTASDQVPKGVRERTDQAVKQA" CDS complement(join(30197257..30197579,30199889..30200945, 30201138..30201187,30201285..30201442,30201599..30201603)) /locus_tag="TCM_015900" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene04568; paralog of Thecc1EG015901t1" /codon_start=1 /product="Cyclin F-box isoform 1" /protein_id="EOY24237.1" /translation="MISRHKKERKRKKNWSSQSFRLKTTSVEQKRWGKQDLVSNQIFN GHKTLEFYFNIVLGQLKSIPNLNRKSLKSMENAEVDWEKLPTLCLFLVLDKLGVPSNL VRFGVVCKYWYSVFNNFLNSKRRSSPNLIPMLLIPTRMSNRVRQLCSLQAKTKIYNIE LPKSHIKRSCGSTYGWLAAVDKNMVITLLNPFKDGVTIDLPEIEVPNPGYPYEYNEYD VHKVILSADPLSYPDSYVVVVIYSMRSKLAFYKSEQKSWIYLDKDLEAFTDVIFYKNL VYAIGTRSLIISFDVNHSLDNNLKPKVKILMSMRQGLEDYVDHAYLVESSRGNLFSIK KEIDVEEYHCCAHFTKSFKVFKLILDDQSGELLEEKEVKNIDGDVVFVGDNQTLTVSA LDFPEAQPNSIYFTDDYFIYTTYKPFGPRDNAAKPNNLLPPVWPSSISATIPISQSQF FLQGPNNPNPTKFSSPTKPKYFFFQNPDNFFPQDPNIQLQQVLNRTDSSHRQPQNQID TTASDQVPKGVRERTDQAVKQA" mobile_element 30197920..30199028 /note="source:CACAO_on_E745_scaffold_10 1 1115" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30199058..30199502 /note="source:CACAO_on_E745_scaffold_10 696 1132" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(30209025..30211840) /locus_tag="TCM_015901" /note="dbxref CacaoGD:Thecc1EG015901" mRNA complement(join(30209025..30210347,30211524..30211840)) /locus_tag="TCM_015901" /product="Cyclin F-box" /inference="alignment:exonerate- protein:2:frave:gene04568.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026990t1" /inference="similar to AA sequence:frave:gene04568" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(30209171..30210340) /locus_tag="TCM_015901" /note="dbxref frave:gene04568; paralog of Thecc1EG026990t1" /codon_start=1 /product="Cyclin F-box" /protein_id="EOY24238.1" /translation="MENVEANWENLPTLCFFLVLNKLDAYSNQVRFGAVCKHWHSAFN NFVDLKRQSSPNLVPMLLIATRMSNRIRQLCSLQVKTKFCNIELPKSHVMRFCGSSYG WLAAVNNNMVITLVNPFKYGITIDLPEIELLSDRTSAGYQFDVHKVILSADPLSHPDN YVVVVIYSNRARLAFYKPTQKSWIYLDKNLTAFTDVIFYKNLAYAIGTRSLVISFAIN DSLDDSLKSPKVKIVRSAYQRIEDYVNRAYLVESSKGDLFSIKKKIEFEDSRDYSYFT KSFKVFKLVLDDQSGKLLEEKEVKNIDGDVVFVGDNQTCVVSALDFPEGQPNSIYFTD DYFIFTGYWPLGPRDNGVFNMKDGKVEKYYRRKAQQTDLPPPHIWVQPSVEFKFR" mobile_element complement(30211640..30212069) /note="source:CACAO_M_E4753_F17_scaffold_2 7373 7823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30212556..30212573 /note="source:CACAO_M_E58230_F143_scaffold_9 1684 1744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30212574..30212644 /note="source:scaffold_6_CACTA_0706 1430 1486" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30212584..30212659) /note="source:CACAO_M_E14113_F106_scaffold_3 13796 13871" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30212660..30212680) /note="source:scaffold_1_CACTA_0011 7426 7515" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30214088..30215450 /note="source:INTACT555_F251_scaffold_2-int 10405 11789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30215069..30215394) /note="source:INTACT622F_F362_scaffold_4-int 10274 11363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30215395..30216154 /note="source:scaffold_1_CACTA_0011 12712 13486" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30217918..30217978) /note="source:CACAO_M_E4221_F305_scaffold_2 1773 1833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30218269..30218682 /note="source:scaffold_9_CACTA_0932 2829 3239" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30218917..30219536 /note="source:INTACT135F_F90_scaffold_2-int 13306 13944" /mobile_element_type="retrotransposon:LTR/Copia" gene 30219405..30222610 /locus_tag="TCM_015902" /note="dbxref CacaoGD:Thecc1EG015902" mRNA join(30219405..30219925,30220813..30222610) /locus_tag="TCM_015902" /product="Ethylene response factor 5, putative" /inference="alignment:exonerate-protein:2:frave:gene10845" /inference="similar to AA sequence:Phytozome:POPTR_0001s15400.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09722t00001" CDS 30221321..30222319 /locus_tag="TCM_015902" /codon_start=1 /product="Ethylene response factor 5, putative" /protein_id="EOY24239.1" /db_xref="Phytozome:POPTR_0001s15400.1" /db_xref="TAIR:AT5G47230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6RZW7" /translation="METSSEVSCALQYIKQYLLDEFSPVGLGSTFSCKYQWITEAKPE VSTSQSESLYSQTSSSDSSLTVSNFNCLDDDDFFRFSPHFPGFKPNGSDVFKFESKPQ IVDLTTPKSLSSNASAFEFEEKPQIVALSATNPQASLNSSSQNRKPSLKISLPNKVEW IQFGKPDLAQVEPKNSNSEDRKHYRGVRQRPWGKFAAEIRDPTRRGSRIWLGTFDTAI EAAKAYDQAAFRLRGSKAILNFPLEAGRLNARDVDGERKRCRDDGEGAERQVKAVKRE NDDVTKARDNGDVPLTPSNWASLLDWDTDVKGIFNVPPLSPLSPYPSLGFPQVMVI" mobile_element complement(30223070..30223202) /note="source:CACAO_on_E373_scaffold_1 597 726" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30223186..30223246 /note="source:scaffold_2_CACTA_0243 6521 6581" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30223210..30223536 /note="source:CACAO_on_E373_scaffold_1 415 826" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30223545..30224081 /note="source:scaffold_4_CACTA_0482 16920 17459" /mobile_element_type="transposon:TIR/CACTA" gene 30229625..30233517 /locus_tag="TCM_015904" /note="dbxref CacaoGD:Thecc1EG015904" mRNA join(30229625..30230097,30230184..30230686, 30231690..30231777,30232168..30232234,30232350..30232545, 30232740..30233517) /locus_tag="TCM_015904" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9541t2" CDS join(30230617..30230686,30231690..30231777, 30232168..30232234,30232350..30232545,30232740..30232744) /locus_tag="TCM_015904" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24240.1" /translation="MSSSEKLMLTKGIDLLLSNGGAQVLNMYACNIVSPQSILSKYNI WPTQSLHSKIFWISAMLCILSGHVLHEDYSKQLLRPSKMIGFTCKEIRTKMIGFNCKE IRIGFNCKEIRIGFNCKELRTKMIGFNCKEIRTDPQFPN" mobile_element complement(30234266..30234550) /note="source:scaffold_9_CACTA_0943 4148 4438" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30234564..30234943 /note="source:scaffold_7_CACTA_0785 5878 6259" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30234615..30234980) /note="source:scaffold_9_CACTA_0943 1611 1989" /mobile_element_type="transposon:TIR/CACTA" gene 30235735..30243830 /locus_tag="TCM_015905" /note="dbxref CacaoGD:Thecc1EG015905" mRNA join(30235735..30235863,30236390..30236491, 30236785..30236904,30237008..30237106,30237209..30237346, 30237481..30237615,30237886..30238065,30238209..30238415, 30238510..30238629,30239032..30239151,30239798..30239920, 30240029..30240133,30240220..30240364,30240509..30240673, 30240753..30240991,30241080..30241112,30241675..30241756, 30241890..30242050,30242266..30242478,30242723..30242905, 30243028..30243206,30243379..30243830) /locus_tag="TCM_015905" /product="H(+)-ATPase 11 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07840.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013793t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s04570.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9516t2" mRNA join(30235735..30235863,30236390..30236491, 30236785..30236904,30237008..30237106,30237209..30237346, 30237481..30237615,30237886..30238065,30238510..30238629, 30239032..30239151,30239798..30239920,30240029..30240133, 30240220..30240364,30240509..30240673,30240753..30240991, 30241080..30241112,30241675..30241756,30241890..30242050, 30242266..30242478,30242723..30242905,30243028..30243206, 30243379..30243830) /locus_tag="TCM_015905" /product="H(\\+)-transporting atpase plant/fungi plasma membrane type, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07840.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018330t2" /inference="similar to AA sequence:Phytozome:POPTR_0015s07710.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b015371t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9516t2" CDS join(30236432..30236491,30236785..30236904, 30237008..30237106,30237209..30237346,30237481..30237615, 30237886..30238065,30238209..30238415,30238510..30238629, 30239032..30239151,30239798..30239920,30240029..30240133, 30240220..30240364,30240509..30240673,30240753..30240991, 30241080..30241112,30241675..30241756,30241890..30242050, 30242266..30242478,30242723..30242905,30243028..30243206, 30243379..30243472) /locus_tag="TCM_015905" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG013793t1" /codon_start=1 /product="H(+)-ATPase 11 isoform 1" /protein_id="EOY24241.1" /db_xref="Phytozome:POPTR_0014s04570.1" /db_xref="TAIR:AT5G62670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LY32" /translation="MDMDKTAAAFEAISKEIVDLENIPVEEVFEKLKCTEGGLSSDEV QKRLDLFGYNKLEEKKENKILKFLGFMWNPLSWVMEAAALMAISLAHGGGKDIDYHDF VGILALLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWSEEDASVLVPGDII SIKLGDIIPADARLLQGDPLKIDQSALTGESLPVTKHPGHGIYSGSTCKQGEIEAVVI ATGVHTFFGKAAHLVETTTHVGHFQQVLTAIGNFCICSIAIGMVIELIVIYGIHHRAY RTGIDNLLVILIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCS DKTGTLTLNKLTVDKNLIEVFVNNVDKDMVVLMAARASRLENQDAIDAAIVAMLGDPK EARAGITEVHFLPFNPTDKRTALTYIDEAGKLHRVSKGAPEQILNLARNKSDIEKKVH SIIDKFAERGLRSLAVARQEVPAGNKDSAGGPWEFVGLLPLFDPPRHDSAETIRRALD LGVSVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGDNKNEALGALPIDELIENADG FAGVFPEHKFEIVKRLQAKKHIVGMTGDGVNDAPALKKADIGIAVADSTDAARSASDI VLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLTVIWKFNFPPFMV LIIAILNDGTIMTISKDRVKPSPVPDSWKLKEIFATGIVLGSYLGLMTIIFFWAAYET DFFPDKFRVRSFYKNNFNLTDKGVRDHLNAQLASAVYLQVSTISQALIFVTRSQGWSF MERPGLLLVTAFIIAQLVATAISAHASWGFAGIKAIGWGWSGVIWLYNIVTYALLDPI KFAVRYALSGRAWDLVLNKRTAFNTQKDFGKEAREAAWAADQRTRHGLQSSDPKIFSE KHTFRDISLMAEEARRRAEIARLRELHTLKGRVESFAKLRGLDIDVNPHYTV" CDS join(30236432..30236491,30236785..30236904, 30237008..30237106,30237209..30237346,30237481..30237615, 30237886..30238065,30238510..30238629,30239032..30239151, 30239798..30239920,30240029..30240133,30240220..30240364, 30240509..30240673,30240753..30240991,30241080..30241112, 30241675..30241756,30241890..30242050,30242266..30242478, 30242723..30242905,30243028..30243206,30243379..30243472) /locus_tag="TCM_015905" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG018330t2" /codon_start=1 /product="H(\\+)-transporting atpase plant/fungi plasma membrane type, putative isoform 2" /protein_id="EOY24242.1" /db_xref="Phytozome:POPTR_0015s07710.1" /db_xref="TAIR:AT5G62670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RD09" /translation="MDMDKTAAAFEAISKEIVDLENIPVEEVFEKLKCTEGGLSSDEV QKRLDLFGYNKLEEKKENKILKFLGFMWNPLSWVMEAAALMAISLAHGGGKDIDYHDF VGILALLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWSEEDASVLVPGDII SIKLGDIIPADARLLQGDPLKIDQSALTGESLPVTKHPGHGIYSGSTCKQGEIEAVVI ATGVHTFFGKAAHLVETTTHVGHFQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKL TVDKNLIEVFVNNVDKDMVVLMAARASRLENQDAIDAAIVAMLGDPKEARAGITEVHF LPFNPTDKRTALTYIDEAGKLHRVSKGAPEQILNLARNKSDIEKKVHSIIDKFAERGL RSLAVARQEVPAGNKDSAGGPWEFVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGD QLAIAKETGRRLGMGTNMYPSSSLLGDNKNEALGALPIDELIENADGFAGVFPEHKFE IVKRLQAKKHIVGMTGDGVNDAPALKKADIGIAVADSTDAARSASDIVLTEPGLSVII SAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLTVIWKFNFPPFMVLIIAILNDGTI MTISKDRVKPSPVPDSWKLKEIFATGIVLGSYLGLMTIIFFWAAYETDFFPDKFRVRS FYKNNFNLTDKGVRDHLNAQLASAVYLQVSTISQALIFVTRSQGWSFMERPGLLLVTA FIIAQLVATAISAHASWGFAGIKAIGWGWSGVIWLYNIVTYALLDPIKFAVRYALSGR AWDLVLNKRTAFNTQKDFGKEAREAAWAADQRTRHGLQSSDPKIFSEKHTFRDISLMA EEARRRAEIARLRELHTLKGRVESFAKLRGLDIDVNPHYTV" gene 30247165..30251989 /locus_tag="TCM_015906" /note="dbxref CacaoGD:Thecc1EG015906" mRNA join(30247165..30247468,30248035..30248309, 30248694..30248759,30248994..30249131,30250187..30250264, 30250389..30250439,30250584..30250618,30250749..30250857, 30251088..30251989) /locus_tag="TCM_015906" /product="Nudix hydrolase" /inference="alignment:exonerate-protein:2:frave:gene10847" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037744t1" /inference="similar to AA sequence:frave:gene10847" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00383t00001" CDS join(30247330..30247468,30248035..30248309, 30248694..30248759,30248994..30249131,30250187..30250264, 30250389..30250439,30250584..30250618,30250749..30250857, 30251088..30251294) /locus_tag="TCM_015906" /note="dbxref frave:gene10847; paralog of Thecc1EG037744t1" /codon_start=1 /product="Nudix hydrolase" /protein_id="EOY24243.1" /db_xref="TAIR:AT5G47240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUS8" /translation="MECSFFSSKCMPMSEIAYMERTYSSQFLSFRPLVDFKSTPQFCF SRGISPKASYSSTPNNTYLPKKALSSVEQEKLGAGNLLYQINGSNSSLFTRNMRILDA FDDEYGGVIVDTERLPPNPNVFASMLRFSLSHWKAKEKKGIWLKLPAEKSDLVPVAVK EGFEYHHAERGYVMLTYWLPEGPSMLPANASHQVGVGGFVINDKNEVLVVQEKYCAPA FVELWKIPTGFIAESEEIFTGAVREVKEETGIDTEFVEVVAFRHVHNVAFEKSDLFFI CMLKPLSTQIMVDDHEIHAAKWMPLVQFVEQPLIREDCMFKKVIDICIDRLGKRYCGL SVHQLASRFDDKISSLYYNVVDSQEINCIGN" gene 30255497..30258451 /locus_tag="TCM_015907" /note="dbxref CacaoGD:Thecc1EG015907" mRNA join(30255497..30255626,30256085..30256294, 30256777..30257064,30257397..30257477,30257858..30258035, 30258096..30258106,30258421..30258451) /locus_tag="TCM_015907" /product="PPPDE thiol peptidase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15420.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038012t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07810.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9793t3" CDS join(30256141..30256294,30256777..30257064, 30257397..30257477,30257858..30258003) /locus_tag="TCM_015907" /note="paralog of Thecc1EG038012t1" /codon_start=1 /product="PPPDE thiol peptidase family protein, putative" /protein_id="EOY24244.1" /db_xref="Phytozome:POPTR_0003s07810.1" /db_xref="TAIR:AT5G47310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVS8" /translation="MRLFPSNSSVTKGQSNGGSNRALLYLNVYDLTPINDYLYWFGLG IFHSGIEVHDLEYGFGAHEYPTSGVFEVEPRSCPGFVFRRSVLLGSTNMSRSEFRAFM EQLSQKYHGDTYHLIAKNCNHFTDEVCLQLTGKPIPGWVNRLARLGSFCNCLLPESIQ VTAVRHLPDHPTYSDDEILDSAATSLTAESEEEDSDHHLLTTPNSDVAFLKEKPVRLA KELL" gene 30259311..30261378 /locus_tag="TCM_015909" /note="dbxref CacaoGD:Thecc1EG015909" mRNA join(30259311..30260158,30260594..30260877) /locus_tag="TCM_015909" /product="RING/U-box superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07800.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07800.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2101t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9534t2" mRNA join(30259311..30260158,30260378..30260617) /locus_tag="TCM_015909" /product="RING/U-box superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07800.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07800.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2101t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9534t2" mRNA join(30259378..30260158,30260865..30261079) /locus_tag="TCM_015909" /product="RING/U-box superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07800.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07800.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9534t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9534t2" mRNA join(30259428..30260158,30260594..30260678, 30260885..30261378) /locus_tag="TCM_015909" /product="RING/U-box superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07800.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07800.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9534t2" CDS join(30259534..30260158,30260594..30260678, 30260885..30261017) /locus_tag="TCM_015909" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 1" /protein_id="EOY24245.1" /db_xref="Phytozome:POPTR_0003s07800.1" /translation="MDTSVFFILLFSLVLSSTAAFESSCPPAKFGHGAFDIRFPFRLK THQPQNCGDRGFDLFCRNNSTMIHFPSYGDLVVKSISYDTRKLNLLDPKNCVHEVFLN LNLSLTPFDYYHVLKNYTYFNCSASLGPSVTQVPCLSGPQHHVYTVESPVPVPDSCRT IKTVAIPFAYSSYLSDSSFGLGLTWDLPERQDSGSQSKTGWFHLAPKEDRSAADTWPN CGDLCWLFHFPSLFFWHSWHGSFSCCNADRHEDPLYPDTGFTCRQGKSICKEVTSIKS AKND" CDS join(30259534..30260158,30260865..30260881) /locus_tag="TCM_015909" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 4" /protein_id="EOY24248.1" /db_xref="Phytozome:POPTR_0003s07800.1" /translation="MDTSVFFILLFSLVLSSTAAFESSCPPAKFGHGAFDIRFPFRLK THQPQNCGDRGFDLFCRNNSTMIHFPSYGDLVVKSISYDTRKLNLLDPKNCVHEVFLN LNLSLTPFDYYHVLKNYTYFNCSASLGPSVTQVPCLSGPQHHVYTVESPVPVPDSCRT IKTVAIPFAYSSYLSDSSFGLGLTWDLPERQDSGSQSKTGWFHLAPKEVHIMV" CDS join(30259534..30260158,30260594..30260682) /locus_tag="TCM_015909" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 2" /protein_id="EOY24246.1" /db_xref="Phytozome:POPTR_0003s07800.1" /translation="MDTSVFFILLFSLVLSSTAAFESSCPPAKFGHGAFDIRFPFRLK THQPQNCGDRGFDLFCRNNSTMIHFPSYGDLVVKSISYDTRKLNLLDPKNCVHEVFLN LNLSLTPFDYYHVLKNYTYFNCSASLGPSVTQVPCLSGPQHHVYTVESPVPVPDSCRT IKTVAIPFAYSSYLSDSSFGLGLTWDLPERQDSGSQSKTGWFHLAPKEDRSAADTWPN CGDLCWLFHFPSLFFWHSW" CDS join(30259534..30260158,30260378..30260460) /locus_tag="TCM_015909" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 3" /protein_id="EOY24247.1" /db_xref="Phytozome:POPTR_0003s07800.1" /translation="MDTSVFFILLFSLVLSSTAAFESSCPPAKFGHGAFDIRFPFRLK THQPQNCGDRGFDLFCRNNSTMIHFPSYGDLVVKSISYDTRKLNLLDPKNCVHEVFLN LNLSLTPFDYYHVLKNYTYFNCSASLGPSVTQVPCLSGPQHHVYTVESPVPVPDSCRT IKTVAIPFAYSSYLSDSSFGLGLTWDLPERQDSGSQSKTGWFHLAPKEDKQICAPANM NLINFMFPPLIHHFIVS" gene 30262998..30268316 /locus_tag="TCM_015910" /note="dbxref CacaoGD:Thecc1EG015910" mRNA join(30262998..30263514,30263671..30265214, 30265417..30265723,30265823..30266055,30267392..30268316) /locus_tag="TCM_015910" /product="Cysteine/Histidine-rich C1 domain family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s17820.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015913t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s17820.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage" CDS join(30263367..30263514,30263671..30265214, 30265417..30265723,30265823..30266055,30267392..30267424) /locus_tag="TCM_015910" /note="paralog of Thecc1EG015913t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein" /protein_id="EOY24249.1" /db_xref="Phytozome:POPTR_0004s17820.1" /db_xref="TAIR:AT4G01350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H171" /translation="MFLYTFYQVMRSIQGLEKKKTKPNNSNLISYCKFIMNLRCRFAP YPIGDELWRLEFILCLLLCLVLLLLCLGICGQKDSAWSHPVRERKDLDSLLLQKRSKR EMDIFKKHLHKHPLWFIEKGNQKLFCTLCGERLSGSAYGCSMCKIFIHDHCSELPPSI ENFLHPCPLVLNILSHEYLPCDCTFCMQPIGASRYHCEECYFDMHVQCALKPTMKSEG EELIQHFTHWHPLKLIQNKEEDQVCCFICQKLCSGSATAYGCEKCKFFLHDSCMTSIP RKINHFFHPCPLILCMSGIFYTCGGCEDRGSFLTFSCRRCRFELDVKCALLPTVKSGG ATQIQHPSHQHPLALSGNIKGRGVRCKECEKICSGGRNTFGCRRCKVFFHKSCAVELS KELDHPFHPHPLTPSSYPHNDSCAACGLIVSSLTFYRCNECKFSLHKDCAKLKPSYNY GPHPHLLTLIDKTDGIYCDICYEKANNFCLRCVVCRFSIHLYCHPSVPKTIEHKCHMH PLTLTESPFEFELNPLEDEDDEFYCDACEKKRDKENPVYYCVSCKFIVETGCVTSALL PFLTNGSIDKDTSRGEAGLAELDKKIAELKEKAEPLKLELEKLRSSLQEVEEQLEPIT WQLNKLENDRFLYSYELGRNKKRAPETPRVVVLRDKWPPETPRIPSEAALRGVPPEEW PPETLHVALLGEWPPKTPRVAAPHKVRHGGRPSETPFVRRLGVERVLYPSPDPHLDPD YYIRKKSNMLSFDS" mobile_element 30266250..30267047 /note="source:INTACT639F_F363_scaffold_5-int 7698 8581" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 30271470..30273171 /note="source:CACAO_M_E22959_F60_scaffold_3 1 1702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30273920..30274084) /note="source:CACAO_M_E48538_F49_scaffold_6 12163 12311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30274236..30274889) /note="source:CACAO_M_E52779_F9_scaffold_8 757 1437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30274890..30275227 /note="source:INTACT36_F116_scaffold_6-int 2662 2991" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30275492..30276074) /note="source:INTACT89_F140_scaffold_9-int 1226 1807" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30275973..30276094 /note="source:CACAO_Helitron_S_E29_scaffold_3 5266 6495" /mobile_element_type="transposon:Helitron" mobile_element complement(30276095..30277198) /note="source:CACAO_M_S_E5474_F222_scaffold_1 1 1107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30277199..30277946) /note="source:CACAO_M_E43661_F9_scaffold_5 8 760" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30278516..30279502 /note="source:CACAO_M_S_E101224_F9_scaffold_9 1852 2792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30283783..30290748 /note="source:scaffold_5_CACTA_0613 4296 10867" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30290750..30291025 /note="source:CACAO_M_E36498_F9_scaffold_5 4009 4284" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30291509..30295567 /locus_tag="TCM_015913" /note="dbxref CacaoGD:Thecc1EG015913" mRNA join(30291509..30292028,30292368..30293792, 30294007..30294491,30295349..30295567) /locus_tag="TCM_015913" /product="Cysteine/Histidine-rich C1 domain family protein" /inference="alignment:exonerate- protein:2:ricco:29765.m000751" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015910t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s17820.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9565t1" CDS join(30292386..30293792,30294007..30294336) /locus_tag="TCM_015913" /note="paralog of Thecc1EG015910t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein" /protein_id="EOY24250.1" /db_xref="Phytozome:POPTR_0004s17820.1" /db_xref="TAIR:AT5G45730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H171" /translation="MDIIKHFLHRHPLSFIDKGNEELFCSRCLKHLSGSTYGCSRCKF FIHDHCAELPPKIEHFLHPCPLVLKVLPLPVVYNCNLCIEPGAGSSYRCEECKFDMHV ECALKPTFKSEGEELIQHFTHWHPLQLVLEKNKEEDQVCCLICQKLCSGSATAYGCKQ CEFFLHNSCMTSIPRKINHFFHPCPLILLTSPFIYTCGGCDERGSFLTFSCGRCCFQL DVKCALLPTVKSEDAKQIQHFSHQHPLALRESINGSEVRCRACEEICSGPTYTFGCSR CSFFFHRSCAVELPQQIHHPFHSQHPLTLSSFPLKNFQYYCAACGLDVRSLLAYRCDK CEFTLHKNCAKLTPSFKYGPHPHLLTLIDKTDGIYCDICRKKANNFCLRCVACRFSIH LYCHLSVPKTINHKCHIHPLTLTESPFEFELNSPKDAYNMDDEFYCDVCEEKRDKYNQ VYYCVTCKFIAETRCVISVLLSFLTNSDEQSTMSSRIISTDEENSEIDSVLAKLDEEI AKLREKAKPFKLEIESLKRLIQKLQARLQELEAKLEPITWGLDKLEEDRFLYMYELKH KMKGKHSIEASP" gene 30295278..30301446 /locus_tag="TCM_015914" /note="dbxref CacaoGD:Thecc1EG015914" mRNA join(30295278..30295835,30295914..30295998, 30296076..30296127,30296234..30296254,30296363..30296416, 30297047..30297097,30297511..30297573,30298255..30298320, 30298458..30298496,30298744..30298866,30299007..30299099, 30300013..30300692) /locus_tag="TCM_015914" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g41570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005697t3" /inference="similar to AA sequence:Phytozome:POPTR_0001s15440.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc726t4" CDS join(30295571..30295835,30295914..30295998, 30296076..30296127,30296234..30296254,30296363..30296416, 30297047..30297097,30297511..30297573,30298255..30298320, 30298458..30298496,30298744..30298866,30299007..30299099, 30300013..30300366) /locus_tag="TCM_015914" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005697t3" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY24251.1" /db_xref="Phytozome:POPTR_0001s15440.1" /db_xref="TAIR:AT3G60340.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HD59" /translation="MPPCIWPHFHQSQASRHRPSSNFQQTTPFKSFWKLNLSQAEIFK KEKIKSSRKTKIFMAFPSKSIAFISFLILTITEASHSIPFIVLHGIGDQCSNRGVKQF TELLTNFSGSKGYCLEIGDGTWDSWFMPLEEQTAVVCEKVKHLKELSKGYNIVGLSQG NLIGRGVVEFCEGGPPVKNFISLGGPHAGTASVPLCGSGFLCLIADKLIKSEIYTDYI QAHLAPSGYLKLPNDIVHYLEKCRFLPKLNNELPGERNSTYKERFTRLQNLVLIMFEQ DNVLIPRETSWFGYYPNGGFKPVIRPQETKLYTEDWIGLKTLDDAGRVHYISVSGGHL GISRKDMKKHVVPYLKDQASMVGSIQSSYAKVQGSHHQIRQSRKRKQEVPWLQDKASS ELILNGSSYYQWPSSVQSFFRELLGLAKD" mRNA join(30295605..30295835,30295914..30295998, 30296076..30296127,30296234..30296254,30296363..30296416, 30297047..30297097,30297511..30297573,30298255..30298320, 30298458..30298496,30298744..30298866,30299007..30299099, 30300013..30301008,30301419..30301446) /locus_tag="TCM_015914" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g41570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005697t3" /inference="similar to AA sequence:Phytozome:POPTR_0001s15440.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc726t10; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc726t4" CDS join(30295742..30295835,30295914..30295998, 30296076..30296127,30296234..30296254,30296363..30296416, 30297047..30297097,30297511..30297573,30298255..30298320, 30298458..30298496,30298744..30298866,30299007..30299099, 30300013..30300366) /locus_tag="TCM_015914" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005697t3" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY24252.1" /db_xref="Phytozome:POPTR_0001s15440.1" /db_xref="TAIR:AT3G60340.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HD59" /translation="MAFPSKSIAFISFLILTITEASHSIPFIVLHGIGDQCSNRGVKQ FTELLTNFSGSKGYCLEIGDGTWDSWFMPLEEQTAVVCEKVKHLKELSKGYNIVGLSQ GNLIGRGVVEFCEGGPPVKNFISLGGPHAGTASVPLCGSGFLCLIADKLIKSEIYTDY IQAHLAPSGYLKLPNDIVHYLEKCRFLPKLNNELPGERNSTYKERFTRLQNLVLIMFE QDNVLIPRETSWFGYYPNGGFKPVIRPQETKLYTEDWIGLKTLDDAGRVHYISVSGGH LGISRKDMKKHVVPYLKDQASMVGSIQSSYAKVQGSHHQIRQSRKRKQEVPWLQDKAS SELILNGSSYYQWPSSVQSFFRELLGLAKD" gene 30300829..30303669 /locus_tag="TCM_015915" /note="dbxref CacaoGD:Thecc1EG015915" mRNA join(30300829..30301008,30301419..30302779, 30302899..30303669) /locus_tag="TCM_015915" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s17820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015913t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s17820.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2035t3" CDS join(30300874..30301008,30301419..30302779, 30302899..30302902) /locus_tag="TCM_015915" /note="paralog of Thecc1EG015913t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY24253.1" /db_xref="Phytozome:POPTR_0004s17820.1" /db_xref="TAIR:AT4G02180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H171" /translation="MVVQYLAATLKQQLDASSFSFLSKVALLVIRQSPSLGFDALCKK KDGNALAAICDGCEKPISGPCYGCCTYCEFYLHYECARLPRQIEHFFHPRPLVLKLYY YTCNACFMPSSGFSYSCVTCHFNMHVDYVSRPTIKSESEGLIQHFTHWHPLTLVDPKN KQEEDQKVCCAICEKLCSDSAYGCQQCSFFLHNSCMTTVPRKINHFFHRCPLILLTYP SYACGGCEKSLSGLTYSCGKCRFKLDVKCGLLPTIESKGADMIQHCTHPHPLALLDQN KDIGSEVRGRCRACGEDCLYPSFRCNGSCDFFLHASCAELPQEIHHPFHLWHPLNLTF FWPQQQHNRSCFARSQRHDAFLLAYCCFWCDFTLHKDCAQFTPPFNYGNYLHALTLCD KRPSPFDCNVCGKKAKKFFLRCAVCGFNIHLYCLPSVPKTIRHKCHIDSLTLTKSPLE FELNSPEVANNSDDKFYCDVCDEREIEGIQFIIVQNANLVLRLAVSSLS" gene complement(30303776..30306738) /locus_tag="TCM_015916" /note="dbxref CacaoGD:Thecc1EG015916" mRNA complement(join(30303776..30304469,30304604..30304678, 30304773..30304855,30305018..30305111,30305338..30305460, 30306175..30306404,30306538..30306599)) /locus_tag="TCM_015916" /product="Tyrosine phosphatase mitochondrial 1-like protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g05010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005692t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07780.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc106t3; inference alignment:Newbler:10:TSA:cgbaB_g01841t00002" mRNA complement(join(30303776..30304469,30304604..30304693, 30304773..30304855,30305018..30305111,30305338..30305460, 30306175..30306404,30306538..30306599)) /locus_tag="TCM_015916" /product="Tyrosine phosphatase mitochondrial 1-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g05010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005692t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc106t11; alternateUTRof:Thecc1EG015916t1; inference alignment:Newbler:10:TSA:cgbaB_g01841t00002" mRNA complement(join(30303838..30304469,30304604..30304693, 30304773..30304855,30305018..30305111,30305338..30305460, 30306175..30306404,30306558..30306682)) /locus_tag="TCM_015916" /product="Tyrosine phosphatase mitochondrial 1-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g05010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005692t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07780.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01841t00002" mRNA complement(join(30303878..30304469,30304604..30304693, 30304773..30304855,30305018..30305111,30305338..30305460, 30306175..30306738)) /locus_tag="TCM_015916" /product="Tyrosine phosphatase mitochondrial 1-like protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g05010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005692t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07780.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00731t00002; inference alignment:Newbler:10:TSA:cgbaB_g01841t00002" CDS complement(join(30304110..30304469,30304604..30304693, 30304773..30304855,30305018..30305111,30305338..30305460, 30306175..30306417)) /locus_tag="TCM_015916" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG005692t1" /codon_start=1 /product="Tyrosine phosphatase mitochondrial 1-like protein isoform 4" /protein_id="EOY24257.1" /db_xref="Phytozome:POPTR_0003s07780.1" /db_xref="TAIR:AT2G35680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZQP1" /translation="MHIEELKGGEMMEKAGEVEEANKSCCGNSGVLGIERNVVEWDAK RVLIGAGARALFYPTLLYNVVRNKIQAEFRWWDRVDEFILLGAVPFPTDVPRLKEIGV RGVITLNEPYETLVPTSLYRNHGIDHLVIPTRDYCFAPSLTSICQAIDFIHRNASCGQ TTYVHCKAGRGRSTTIVLCYLVHYKQMTPVAAYDYVRSIRPRVLLASSQWQAVQEFYY LQVKKVGLHSHVADLILRTSDTAPSQDLVAFDDGSVVVVTKADLDGYEQSLESGAVWA DLSVVYRVRVAGQAALARISCLWLRCQAHQKISAQELGRESSCLRGISVDIHVY" CDS complement(join(30304110..30304469,30304604..30304678, 30304773..30304855,30305018..30305111,30305338..30305460, 30306175..30306387)) /locus_tag="TCM_015916" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005692t1" /codon_start=1 /product="Tyrosine phosphatase mitochondrial 1-like protein isoform 3" /protein_id="EOY24256.1" /db_xref="Phytozome:POPTR_0003s07780.1" /db_xref="TAIR:AT2G35680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZQP1" /translation="MMEKAGEVEEANKSCCGNSGVLGIERNVVEWDAKRVLIGAGARA LFYPTLLYNVVRNKIQAEFRWWDRVDEFILLGAVPFPTDVPRLKEIGVRGVITLNEPY ETLVPTSLYRNHGIDHLVIPTRDYCFAPSLTSICQAIDFIHRNASCGQTTYVHCKAGR GRSTTIVLCYLMTPVAAYDYVRSIRPRVLLASSQWQAVQEFYYLQVKKVGLHSHVADL ILRTSDTAPSQDLVAFDDGSVVVVTKADLDGYEQSLESGAVWADLSVVYRVRVAGQAA LARISCLWLRCQAHQKISAQELGRESSCLRGISVDIHVY" CDS complement(join(30304110..30304469,30304604..30304693, 30304773..30304855,30305018..30305111,30305338..30305460, 30306175..30306387)) /locus_tag="TCM_015916" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005692t1" /codon_start=1 /product="Tyrosine phosphatase mitochondrial 1-like protein isoform 1" /protein_id="EOY24254.1" /db_xref="Phytozome:POPTR_0003s07780.1" /db_xref="TAIR:AT2G35680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZQP1" /translation="MMEKAGEVEEANKSCCGNSGVLGIERNVVEWDAKRVLIGAGARA LFYPTLLYNVVRNKIQAEFRWWDRVDEFILLGAVPFPTDVPRLKEIGVRGVITLNEPY ETLVPTSLYRNHGIDHLVIPTRDYCFAPSLTSICQAIDFIHRNASCGQTTYVHCKAGR GRSTTIVLCYLVHYKQMTPVAAYDYVRSIRPRVLLASSQWQAVQEFYYLQVKKVGLHS HVADLILRTSDTAPSQDLVAFDDGSVVVVTKADLDGYEQSLESGAVWADLSVVYRVRV AGQAALARISCLWLRCQAHQKISAQELGRESSCLRGISVDIHVY" CDS complement(join(30304110..30304469,30304604..30304693, 30304773..30304855,30305018..30305111,30305338..30305460, 30306175..30306387)) /locus_tag="TCM_015916" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005692t1" /codon_start=1 /product="Tyrosine phosphatase mitochondrial 1-like protein isoform 1" /protein_id="EOY24255.1" /db_xref="Phytozome:POPTR_0003s07780.1" /db_xref="TAIR:AT2G35680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZQP1" /translation="MMEKAGEVEEANKSCCGNSGVLGIERNVVEWDAKRVLIGAGARA LFYPTLLYNVVRNKIQAEFRWWDRVDEFILLGAVPFPTDVPRLKEIGVRGVITLNEPY ETLVPTSLYRNHGIDHLVIPTRDYCFAPSLTSICQAIDFIHRNASCGQTTYVHCKAGR GRSTTIVLCYLVHYKQMTPVAAYDYVRSIRPRVLLASSQWQAVQEFYYLQVKKVGLHS HVADLILRTSDTAPSQDLVAFDDGSVVVVTKADLDGYEQSLESGAVWADLSVVYRVRV AGQAALARISCLWLRCQAHQKISAQELGRESSCLRGISVDIHVY" gene complement(30307843..30311070) /locus_tag="TCM_015917" /note="dbxref CacaoGD:Thecc1EG015917" mRNA complement(join(30307843..30308265,30309132..30309209, 30309438..30311070)) /locus_tag="TCM_015917" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g26050.1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400061401" /inference="similar to AA sequence:ricco:27401.m000283" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc453t1; alternateUTRof:Thecc1EG015917t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9586t3" mRNA complement(join(30307843..30308265,30308684..30308976, 30309132..30309209,30309438..30310951)) /locus_tag="TCM_015917" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g26050.1" /inference="similar to AA sequence:ricco:27401.m000283" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9586t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9586t3" mRNA complement(join(30307882..30308265,30308684..30309023, 30309132..30309209,30309438..30311070)) /locus_tag="TCM_015917" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g26050.1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400061401" /inference="similar to AA sequence:ricco:27401.m000283" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc689t6; alternateUTRof:Thecc1EG015917t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9586t3" mRNA complement(join(30308570..30308955,30309132..30309209, 30309438..30311070)) /locus_tag="TCM_015917" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g26050.1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400061401" /inference="similar to AA sequence:ricco:27401.m000283" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc689t1; alternateUTRof:Thecc1EG015917t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9586t3" CDS complement(join(30309182..30309209,30309438..30310861)) /locus_tag="TCM_015917" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27401.m000283" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY24258.1" /db_xref="TAIR:AT5G47360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUS3" /translation="MPILSLSRFISISISSKPNKIFTFLFSTASSADKFFTHLQKKQS NIEKTLALVNSKLDSNCVCEVLERCCFDKSQMGLRFFIWAGLQSNYRHSSYMYSKACE FLKIKQNPFLVLDVIEAYKVEKCLVNVKMFKVVLNLCREARITDEALLVLRKMPEFNL RPDTTTYNVVIRLICEKGDMDMADKLMKDMGLIDLYPDMITYLAMIKGFCNAGRLEDA CGLFQVMREHGCFPNAVAYSALLEGICRYGSVEKALELLGEMEKEGDGCSPNVITYTS VIQSFCEKGQTTKALRVLDRMGTCGCAPNRVTVSTLIKRLCAEGHVEEAYKLIDKVVP GGGVSDGDCYSSLVVSLIRIKRLDEAEKLFRKMLATGAKPDSIACSIMIREICQEGRV LDGFYLYEEIERMRYLSSIDADIYSILLVGLCRQSHSVEAAKLARSMLEKRIRLKAPY VDKIIEHLKNCGDKQLVTELGRIGRILFRMILV" CDS complement(join(30309182..30309209,30309438..30310861)) /locus_tag="TCM_015917" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27401.m000283" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY24259.1" /db_xref="TAIR:AT5G47360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUS3" /translation="MPILSLSRFISISISSKPNKIFTFLFSTASSADKFFTHLQKKQS NIEKTLALVNSKLDSNCVCEVLERCCFDKSQMGLRFFIWAGLQSNYRHSSYMYSKACE FLKIKQNPFLVLDVIEAYKVEKCLVNVKMFKVVLNLCREARITDEALLVLRKMPEFNL RPDTTTYNVVIRLICEKGDMDMADKLMKDMGLIDLYPDMITYLAMIKGFCNAGRLEDA CGLFQVMREHGCFPNAVAYSALLEGICRYGSVEKALELLGEMEKEGDGCSPNVITYTS VIQSFCEKGQTTKALRVLDRMGTCGCAPNRVTVSTLIKRLCAEGHVEEAYKLIDKVVP GGGVSDGDCYSSLVVSLIRIKRLDEAEKLFRKMLATGAKPDSIACSIMIREICQEGRV LDGFYLYEEIERMRYLSSIDADIYSILLVGLCRQSHSVEAAKLARSMLEKRIRLKAPY VDKIIEHLKNCGDKQLVTELGRIGRILFRMILV" CDS complement(join(30309182..30309209,30309438..30310861)) /locus_tag="TCM_015917" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:27401.m000283" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY24260.1" /db_xref="TAIR:AT5G47360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUS3" /translation="MPILSLSRFISISISSKPNKIFTFLFSTASSADKFFTHLQKKQS NIEKTLALVNSKLDSNCVCEVLERCCFDKSQMGLRFFIWAGLQSNYRHSSYMYSKACE FLKIKQNPFLVLDVIEAYKVEKCLVNVKMFKVVLNLCREARITDEALLVLRKMPEFNL RPDTTTYNVVIRLICEKGDMDMADKLMKDMGLIDLYPDMITYLAMIKGFCNAGRLEDA CGLFQVMREHGCFPNAVAYSALLEGICRYGSVEKALELLGEMEKEGDGCSPNVITYTS VIQSFCEKGQTTKALRVLDRMGTCGCAPNRVTVSTLIKRLCAEGHVEEAYKLIDKVVP GGGVSDGDCYSSLVVSLIRIKRLDEAEKLFRKMLATGAKPDSIACSIMIREICQEGRV LDGFYLYEEIERMRYLSSIDADIYSILLVGLCRQSHSVEAAKLARSMLEKRIRLKAPY VDKIIEHLKNCGDKQLVTELGRIGRILFRMILV" CDS complement(join(30309182..30309209,30309438..30310861)) /locus_tag="TCM_015917" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:27401.m000283" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY24261.1" /db_xref="TAIR:AT5G47360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUS3" /translation="MPILSLSRFISISISSKPNKIFTFLFSTASSADKFFTHLQKKQS NIEKTLALVNSKLDSNCVCEVLERCCFDKSQMGLRFFIWAGLQSNYRHSSYMYSKACE FLKIKQNPFLVLDVIEAYKVEKCLVNVKMFKVVLNLCREARITDEALLVLRKMPEFNL RPDTTTYNVVIRLICEKGDMDMADKLMKDMGLIDLYPDMITYLAMIKGFCNAGRLEDA CGLFQVMREHGCFPNAVAYSALLEGICRYGSVEKALELLGEMEKEGDGCSPNVITYTS VIQSFCEKGQTTKALRVLDRMGTCGCAPNRVTVSTLIKRLCAEGHVEEAYKLIDKVVP GGGVSDGDCYSSLVVSLIRIKRLDEAEKLFRKMLATGAKPDSIACSIMIREICQEGRV LDGFYLYEEIERMRYLSSIDADIYSILLVGLCRQSHSVEAAKLARSMLEKRIRLKAPY VDKIIEHLKNCGDKQLVTELGRIGRILFRMILV" gene 30313948..30316711 /locus_tag="TCM_015918" /note="dbxref CacaoGD:Thecc1EG015918" mRNA 30313948..30316711 /locus_tag="TCM_015918" /product="Hydroxyproline-rich glycoprotein family protein, putative" /inference="alignment:exonerate- protein:2:ricco:27401.m000282" /inference="similar to AA sequence:Phytozome:POPTR_0003s07770.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9576t1" CDS 30313982..30315823 /locus_tag="TCM_015918" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein, putative" /protein_id="EOY24262.1" /db_xref="Phytozome:POPTR_0003s07770.1" /db_xref="TAIR:AT4G16790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GYL9" /translation="MLTSPTIPPLFHSLSLPFLILHFSLTPKSSFHLLLHLHILWHKQ SLPRKQEKTPLSSSFFFFLFLDLSSSMADTDSYTKRQQLVKAQNQENPSKYYKHFLNK ALVVIIFLVIIPVFPSQAPEFINQTLLNRSWELLHLLFVGIAVSYGLFSRRNDEIEKE NNNNQSKFDNVQSFVSRFLQVSSVFDDEAENLPGSDESKVQTWSNQYYRNEPPVVVAK EHAVLDEQRSSSSRISEKPLLLPVRSLKSRVLDANNLETSRENSSNSSSLSRSDSSFS SKRFSNKGTNGALGGLDQDALEKKLNENNVVLPSPIPWRSRSGRMEVKDDIESEFNRL ESRSFRSQTNRLSRSSSLSSSPKLSPSPPLSSPKKLSPSPPLSMEAQAKSAEDVVRKK SIYRSPPPPPPPPPPPIIHKSSSLKPSSTLIDDEVSFDKDLPWNYASEDSDGDTLMGT QRDYVDGLSKGKSLKMIRPSDSLRGTRKDGEIENGINGKTVRFDQTSFRTEKLNRESV SFMPKPTFMEFPQEQKHEFVEKLVMETTDDESESENEEVGDTSFLSSFERSPNIEEAS PSSGIDGGSDVDKKADEFIAKVREQIRLQRIDSIKRSSGQMKRNSPR" gene complement(30320294..30322615) /locus_tag="TCM_015919" /note="dbxref CacaoGD:Thecc1EG015919" mRNA complement(join(30320294..30321085,30321203..30321282, 30321532..30321842,30322254..30322615)) /locus_tag="TCM_015919" /product="Homeobox-leucine zipper protein 4 / HD-ZIP protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005689t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15490.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04422t00001" CDS complement(join(30320752..30321085,30321203..30321282, 30321532..30321842,30322254..30322431)) /locus_tag="TCM_015919" /note="paralog of Thecc1EG005689t1" /codon_start=1 /product="Homeobox-leucine zipper protein 4 / HD-ZIP protein" /protein_id="EOY24263.1" /db_xref="Phytozome:POPTR_0001s15490.1" /db_xref="TAIR:AT4G16780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q05466" /translation="MMVGKEDLGLSLSLSFPQNHHSLQLNLRPSLVPSSANSCSSPSG LTLQKPSWNDASTPSDPISESCRAETRSFLRGIDVNRLPSAVDCEEEAGVSSPNSTIS SVSGKRSEREGNGDEHEIERACSRGISDEEDGDTSRKKLRLSKDQSAILEESFKEHNT LNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQ KEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPPNAASTVDPRSHQLGQTHHRP IPINPWAPAAPIPHGPLDALRPRS" mobile_element 30330180..30330284 /note="source:scaffold_4_CACTA_0483 1038 1149" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30337002..30337354 /note="source:scaffold_4_CACTA_0482 16796 17150" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30337309..30337507) /note="source:scaffold_2_CACTA_0243 6524 6760" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30339226..30339282 /note="source:scaffold_2_CACTA_0239 10689 10745" /mobile_element_type="transposon:TIR/CACTA" gene complement(30339565..30344038) /locus_tag="TCM_015920" /note="dbxref CacaoGD:Thecc1EG015920" mRNA complement(join(30339565..30340059,30342311..30342439, 30342715..30342794,30342912..30342956,30343067..30343138, 30343233..30343866)) /locus_tag="TCM_015920" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g15370.1" /inference="similar to AA sequence:Phytozome:GSVIVT01005818001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1302t6; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1302t6" mRNA complement(join(30342209..30342439,30342715..30342956, 30343067..30343138,30343233..30344038)) /locus_tag="TCM_015920" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g15370.1" /inference="similar to AA sequence:Phytozome:GSVIVT01005818001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9604t1; alternateUTRof:Thecc1EG015920t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1302t6; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9797t1" mRNA complement(join(30342310..30342794,30342912..30342956, 30343067..30343138,30343233..30344038)) /locus_tag="TCM_015920" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g15370.1" /inference="similar to AA sequence:Phytozome:GSVIVT01005818001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc894t10; alternateUTRof:Thecc1EG015920t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1302t6; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9797t1" mRNA complement(join(30342310..30342956,30343067..30343138, 30343233..30344038)) /locus_tag="TCM_015920" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g15370.1" /inference="similar to AA sequence:Phytozome:GSVIVT01005818001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc894t9; alternateUTRof:Thecc1EG015920t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1302t6; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9797t1" mRNA complement(join(30342310..30342794,30342912..30343138, 30343233..30344038)) /locus_tag="TCM_015920" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g15370.1" /inference="similar to AA sequence:Phytozome:GSVIVT01005818001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc894t6; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1302t6; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9797t1" CDS complement(join(30342951..30342956,30343067..30343138, 30343233..30343826)) /locus_tag="TCM_015920" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24264.1" /db_xref="Phytozome:GSVIVT01005818001" /db_xref="TAIR:AT4G17440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TG77" /translation="MATAPVKSQPLHNFNFPFLKWGTHGGGGSSTSSADHRRSPESDS DHDRLRPTRVGSRSTRIQRLSFLPPPKPIKQSHGEDEEQQQEEQPLKPHKNEAEEEEE EETVQRPWNLRPRKVVVETTAVVTTAMEKVSETAAPKSMRLRGLAENGGIVEKKEKRK FWIALSREEIEEDIFVMTGSRPARRPKKRPKNIQKQLDAVFPGLWLVGTTADAYRVAD APVKK" CDS complement(join(30342951..30342956,30343067..30343138, 30343233..30343826)) /locus_tag="TCM_015920" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24265.1" /db_xref="Phytozome:GSVIVT01005818001" /db_xref="TAIR:AT4G17440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TG77" /translation="MATAPVKSQPLHNFNFPFLKWGTHGGGGSSTSSADHRRSPESDS DHDRLRPTRVGSRSTRIQRLSFLPPPKPIKQSHGEDEEQQQEEQPLKPHKNEAEEEEE EETVQRPWNLRPRKVVVETTAVVTTAMEKVSETAAPKSMRLRGLAENGGIVEKKEKRK FWIALSREEIEEDIFVMTGSRPARRPKKRPKNIQKQLDAVFPGLWLVGTTADAYRVAD APVKK" CDS complement(join(30342951..30342956,30343067..30343138, 30343233..30343826)) /locus_tag="TCM_015920" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24266.1" /db_xref="Phytozome:GSVIVT01005818001" /db_xref="TAIR:AT4G17440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TG77" /translation="MATAPVKSQPLHNFNFPFLKWGTHGGGGSSTSSADHRRSPESDS DHDRLRPTRVGSRSTRIQRLSFLPPPKPIKQSHGEDEEQQQEEQPLKPHKNEAEEEEE EETVQRPWNLRPRKVVVETTAVVTTAMEKVSETAAPKSMRLRGLAENGGIVEKKEKRK FWIALSREEIEEDIFVMTGSRPARRPKKRPKNIQKQLDAVFPGLWLVGTTADAYRVAD APVKK" CDS complement(join(30342951..30342956,30343067..30343138, 30343233..30343826)) /locus_tag="TCM_015920" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24268.1" /db_xref="Phytozome:GSVIVT01005818001" /db_xref="TAIR:AT4G17440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TG77" /translation="MATAPVKSQPLHNFNFPFLKWGTHGGGGSSTSSADHRRSPESDS DHDRLRPTRVGSRSTRIQRLSFLPPPKPIKQSHGEDEEQQQEEQPLKPHKNEAEEEEE EETVQRPWNLRPRKVVVETTAVVTTAMEKVSETAAPKSMRLRGLAENGGIVEKKEKRK FWIALSREEIEEDIFVMTGSRPARRPKKRPKNIQKQLDAVFPGLWLVGTTADAYRVAD APVKK" CDS complement(join(30343049..30343138,30343233..30343826)) /locus_tag="TCM_015920" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY24267.1" /db_xref="Phytozome:GSVIVT01005818001" /db_xref="TAIR:AT4G17440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TG77" /translation="MATAPVKSQPLHNFNFPFLKWGTHGGGGSSTSSADHRRSPESDS DHDRLRPTRVGSRSTRIQRLSFLPPPKPIKQSHGEDEEQQQEEQPLKPHKNEAEEEEE EETVQRPWNLRPRKVVVETTAVVTTAMEKVSETAAPKSMRLRGLAENGGIVEKKEKRK FWIALSREEIEEDIFVMTGSRPARRPKKRPKNIQKQLDAVFPGLWLVGTTADAYRVAD APVKVCRLI" mobile_element complement(30346726..30347098) /note="source:CACAO_Mariner_E176_scaffold_6 3841 4212" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 30348165..30354886 /locus_tag="TCM_015921" /note="dbxref CacaoGD:Thecc1EG015921" mRNA join(30348165..30348524,30348860..30349253, 30349393..30349527,30349626..30349801,30350184..30350588, 30350690..30350848,30351799..30352296,30352666..30352803, 30353063..30353793,30353953..30354886) /locus_tag="TCM_015921" /product="HOS1" /inference="alignment:exonerate- protein:2:ricco:27401.m000276" /inference="similar to AA sequence:ricco:27401.m000276" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9600t2" CDS join(30348408..30348524,30348860..30349253, 30349393..30349527,30349626..30349801,30350184..30350588, 30350690..30350848,30351799..30352296,30352666..30352803, 30353063..30353793,30353953..30354112) /locus_tag="TCM_015921" /note="dbxref ricco:27401.m000276" /codon_start=1 /product="HOS1" /protein_id="EOY24269.1" /db_xref="TAIR:AT2G39810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D6BP27" /translation="MEKTEINGPIFPSSSTSNVRAVRSPAPPLQPNFSSRAVQEALER LASIDLTELFNEAKVEYCRATRDLRSCGRYVQYVLYSCGHASLCAECSQRCDLCPICR IPLMKSGNTRIRLRLYDECIDAGLILRRGDERFQDKEDRDNQLTADVQRLYSFLDVAL ENNLVSLVCHYVTDICMDETAVSSDAVTALLLDEKVVKDWVKRTFKNIAIELQGIYYL EVEEMKSRLGSLLKFSVHLAGLSCVLEVLESSFKGRLLAQLHDLHHLQESILKTKQHL DIAIWCIRHQFLEHVRSRHTNFTSWRNLVRERKSAAIKRAWPDVVDHSADPTGQAGSL FIEDALANLEIEQAYDQEIGEESDFPFLQKNGALPFFRSKIEGMTGCYPFENLRAAVD ILFLRGSSDLVVAKQAILLYYLFDRHWSMPEEEWRHIVDDFAASFGISRHSLLESFTF CLLDDHSDEALLECHQLLPEIYGPATHPKIARVLLERQNPEAAQMVLRWSGRDGGSQL VLLSEAVTIVRVKVECGLLTEAFTYQRMLSTKVREKKFNYGPSGEAFDDLKGQCRSWM DWIEVLVTEFCCLCIRTNLVDRMIELPWNSDEEKYIHKCLLDCAADDPSTTIGSLLVV FYLQRYRYVEAYQVNLKLWSLEQDFIANDSVNEEVLSRMESQRQKRKELVDKGIELLP EVLQQQVKTGTLSDIVVASGQEDEMPARSSLPELQEPKSACLLVPSTSDSIFLRTDHM ATPLRPPVFEIPKIFGGYVNNSHIQAGNQGSSSILRGRLFADAERVSNVEVAKNIKFD DISSPGLCRASLTYATPLKGISQSPSRELPNRHLQEKQSDKIISEGEQNGFVNQIRNT SPPYSRRVTANPVSTPSNSYGLFKGSANNLRSNISSKRGQSDRDDGHWKVPPTEDLMD VSWSHGERSSEDRNANVGLRWRSDETSDEEEQSPERTVEVGATPMRGYRTRRFARR" gene 30355068..30358577 /locus_tag="TCM_015922" /note="dbxref CacaoGD:Thecc1EG015922" mRNA join(30355068..30355394,30355649..30355841, 30356148..30356213,30356353..30356404,30356612..30356733, 30356975..30357075,30357154..30357212,30357325..30357381, 30357496..30357541,30357879..30357958,30358231..30358441) /locus_tag="TCM_015922" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G16770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015924t1" /inference="similar to AA sequence:frave:gene08865" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04209t00001" mobile_element complement(30355097..30355230) /note="source:MITE_Unknown_5_3 1320 1454" /mobile_element_type="transposon:TIR/MITE" mRNA join(30355230..30355394,30355649..30355841, 30356148..30356213,30356353..30356404,30356612..30356733, 30356975..30357075,30357151..30357212,30357325..30357381, 30357496..30357541,30357879..30357958,30358231..30358568) /locus_tag="TCM_015922" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT4G16770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015924t1" /inference="similar to AA sequence:frave:gene08865" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9788t1; inference alignment:Newbler:10:TSA:cgbaP1_g04209t00001" CDS join(30355317..30355394,30355649..30355841, 30356148..30356213,30356353..30356404,30356612..30356733, 30356975..30357075,30357151..30357212,30357325..30357381, 30357496..30357541,30357879..30357958,30358231..30358294) /locus_tag="TCM_015922" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene08865; paralog of Thecc1EG015924t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 3" /protein_id="EOY24272.1" /db_xref="TAIR:AT4G16770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0Z2M1" /translation="MSEALQLPIVDLSSPDCISTANAIRQACMDHGFFYLVNHEVEEE LLKEVFEQSSKFFSLPVEEKMKLAKKNHRGYTAPYAEKLDTSLNTKGDSKESFYIGPL ADNLNQWPLEEDLPSWRSTMETYHKKVLCAGTRLISLIALALKLDEDFFEKVGALNEP LAFSRMLHYPGDLDSSSEEIYGASAHSDYGMITLLVTDGVPGLQQVCREKSKKPQVWE DVPSMNGAFIVNIGDMMERWTNCLFRSTLHRVLPPGQERYSVAFFINPNKDCIVECLE SCCSESCPPRFLPIRCLDYLEERLRLTYGS" CDS join(30355317..30355394,30355649..30355841, 30356148..30356213,30356353..30356404,30356612..30356733, 30356975..30357075,30357154..30357212,30357325..30357381, 30357496..30357541,30357879..30357958,30358231..30358294) /locus_tag="TCM_015922" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene08865; paralog of Thecc1EG015924t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /protein_id="EOY24270.1" /db_xref="TAIR:AT4G16770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0Z2M1" /translation="MSEALQLPIVDLSSPDCISTANAIRQACMDHGFFYLVNHEVEEE LLKEVFEQSSKFFSLPVEEKMKLAKKNHRGYTAPYAEKLDTSLNTKGDSKESFYIGPL ADNLNQWPLEEDLPSWRSTMETYHKKVLCAGTRLISLIALALKLDEDFFEKVGALNEP LAFSRMLHYPGDLDSSSEEIYGASAHSDYGMITLLVTDGVPGLQVCREKSKKPQVWED VPSMNGAFIVNIGDMMERWTNCLFRSTLHRVLPPGQERYSVAFFINPNKDCIVECLES CCSESCPPRFLPIRCLDYLEERLRLTYGS" mRNA join(30355385..30355555,30355649..30355841, 30356148..30356213,30356353..30356404,30356612..30356733, 30356975..30357075,30357154..30357212,30357325..30357381, 30357496..30357541,30357879..30357958,30358231..30358577) /locus_tag="TCM_015922" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT4G16770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015924t1" /inference="similar to AA sequence:frave:gene08865" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01661t00001; inference alignment:Newbler:10:TSA:cgbaP1_g04209t00001" CDS join(30355550..30355555,30355649..30355841, 30356148..30356213,30356353..30356404,30356612..30356733, 30356975..30357075,30357154..30357212,30357325..30357381, 30357496..30357541,30357879..30357958,30358231..30358294) /locus_tag="TCM_015922" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene08865; paralog of Thecc1EG015924t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2" /protein_id="EOY24271.1" /db_xref="TAIR:AT4G16765.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A1A6I8" /translation="MKACMDHGFFYLVNHEVEEELLKEVFEQSSKFFSLPVEEKMKLA KKNHRGYTAPYAEKLDTSLNTKGDSKESFYIGPLADNLNQWPLEEDLPSWRSTMETYH KKVLCAGTRLISLIALALKLDEDFFEKVGALNEPLAFSRMLHYPGDLDSSSEEIYGAS AHSDYGMITLLVTDGVPGLQVCREKSKKPQVWEDVPSMNGAFIVNIGDMMERWTNCLF RSTLHRVLPPGQERYSVAFFINPNKDCIVECLESCCSESCPPRFLPIRCLDYLEERLR LTYGS" mobile_element complement(30358693..30359544) /note="source:CACAO_on_E49_scaffold_7 4 859" /mobile_element_type="transposon:TIR/hAT" gene 30359539..30362576 /locus_tag="TCM_015923" /note="dbxref CacaoGD:Thecc1EG015923" mRNA join(30359539..30359964,30361872..30362576) /locus_tag="TCM_015923" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.58 coverage" CDS join(30359926..30359964,30361872..30362144) /locus_tag="TCM_015923" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24273.1" /translation="MSIVKSLFILKEKILFLGGVFKPQGTEPATAILAFLLVISFLTL PTFSLLPNAILLNAPPPWSRRRRRFSGTTSSTVNTSSIQQHSSTNANDESQKAFDLTF R" gene 30362628..30371486 /locus_tag="TCM_015924" /note="dbxref CacaoGD:Thecc1EG015924" mRNA join(30362628..30362800,30362896..30363078, 30363418..30363483,30364961..30365010,30365162..30365221, 30366258..30366393,30366958..30367150,30367484..30367552, 30367775..30367826,30368222..30368343,30368823..30368923, 30369001..30369059,30369475..30369531,30369649..30369694, 30370010..30370089,30370595..30371486) /locus_tag="TCM_015924" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015922t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07740.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02425t00001" CDS join(30362756..30362800,30362896..30363078, 30363418..30363483,30364961..30365010,30365162..30365221, 30366258..30366393,30366958..30367150,30367484..30367552, 30367775..30367826,30368222..30368343,30368823..30368923, 30369001..30369059,30369475..30369531,30369649..30369694, 30370010..30370089,30370595..30370679) /locus_tag="TCM_015924" /note="paralog of Thecc1EG015922t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein" /protein_id="EOY24274.1" /db_xref="Phytozome:POPTR_0003s07740.1" /db_xref="TAIR:AT4G16770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0Z2M1" /translation="MLQRMNGYTNVHPMQLPSRTAIPLNAPPLLSCRCFSRTTASAFN TSSIQQHSRTNASDEPQKASDLTFQQAIQSLQVGAKTMNPLTYLSSLSRTMECCKNAS ESSFFTILDHRCLMEQRVKFWDSSCCSKSCPPSLRQPIRSKTLLAHSINQRKMSQALQ LPIIDLSSDDRLSTANLIRQACVDHGFFYIVNHGLEEELLKKVLEQSKMFFSLPVEEK MKLAVKNHRGYTGMYQEKLDPSLSAKGDSKESFYIGPQTENHLNQWPSEEDLPSWRST MEAYHKKVLSAGTKVISLIALALNLDEDFFEKLGALNDPLAFIRLLHYPEDMDSTEEE TYGASAHSDYGMITLLLTDGVPGLQVCREKSKQPQLWEDVPSISGALIVNIGDMMERW TNCLFRSTLHRVVPAGEERYSVAFFLDADKDCIVECLESCCSESCPPRFPPIRSSDYL QERFRVTATASIEDYLL" mobile_element 30363907..30364156 /note="source:INTACT170F_F2_scaffold_3-int 1368 1616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30364246..30364499) /note="source:CACAO_M_S_E51917_F2_scaffold_4 2476 2730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30364590..30364776) /note="source:CACAO_M_S_E51917_F2_scaffold_4 2541 2729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30364604..30364806 /note="source:CACAO_M_E34351_F2_scaffold_4 1416 1619" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30375315..30378299 /locus_tag="TCM_015926" /note="dbxref CacaoGD:Thecc1EG015926" mRNA join(30375315..30375596,30375716..30375960, 30376758..30376966,30377491..30378299) /locus_tag="TCM_015926" /product="Myb-like transcription factor family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005816001" /inference="similar to AA sequence:Phytozome:POPTR_0001s15510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9780t2" CDS join(30375463..30375596,30375716..30375960, 30376758..30376966,30377491..30377997) /locus_tag="TCM_015926" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Myb-like transcription factor family protein isoform 1" /protein_id="EOY24275.1" /db_xref="Phytozome:POPTR_0001s15510.1" /db_xref="TAIR:AT5G47390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUR9" /translation="MDIVCPSFSLSVYLQRQPEREEPNKEKEEVCSFSSFKSRALTYM RHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSQYSGSNSGAHNGNGSGSPGEG PDHAEGYASEDFVPGSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGISRNYVIS RTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADESVDTAMVSQDLFSANHLQAETQ SNDQLPVPPPLDEEDESMDSNNSNDGEAVPPKSESSQPCYPVVYPAYFPPFIPFSFPY WMGGNTEPTKKDTHEVVKPTAVHSKSPINVDELVGMSKLSLGESIGDNGPSSLSLKLL DGSSRQSAFHANPASGSSSMNSSGSPIHAV" mRNA join(30375688..30375956,30376756..30376966, 30377491..30378193) /locus_tag="TCM_015926" /product="Myb-like transcription factor family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005816001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028884t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15510.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04012t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9780t2" CDS join(30375907..30375956,30376756..30376966, 30377491..30377997) /locus_tag="TCM_015926" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG028884t1" /codon_start=1 /product="Myb-like transcription factor family protein isoform 2" /protein_id="EOY24276.1" /db_xref="Phytozome:POPTR_0001s15510.1" /db_xref="TAIR:AT5G47390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUR9" /translation="MLPRILSPGRLRVVKEKGVPWTEEEHRMFLLGLQKLGKGDWRGI SRNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADESVDTAMVSQDLFSAN HLQAETQSNDQLPVPPPLDEEDESMDSNNSNDGEAVPPKSESSQPCYPVVYPAYFPPF IPFSFPYWMGGNTEPTKKDTHEVVKPTAVHSKSPINVDELVGMSKLSLGESIGDNGPS SLSLKLLDGSSRQSAFHANPASGSSSMNSSGSPIHAV" gene 30378365..30381821 /locus_tag="TCM_015927" /note="dbxref CacaoGD:Thecc1EG015927" mRNA join(30378365..30379373,30379881..30381198, 30381256..30381777) /locus_tag="TCM_015927" /product="O-fucosyltransferase family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07710.1" /inference="similar to AA sequence:ricco:29869.m001137" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9782t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc994t3_C1; inference alignment:Newbler:10:TSA:cgbaB_g13124t00001" mRNA join(30378608..30379373,30379489..30379579, 30379783..30381821) /locus_tag="TCM_015927" /product="O-fucosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07710.1" /inference="similar to AA sequence:ricco:29869.m001137" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc994t3_C1" CDS join(30378907..30379373,30379489..30379579, 30379783..30380958) /locus_tag="TCM_015927" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29869.m001137" /codon_start=1 /product="O-fucosyltransferase family protein isoform 1" /protein_id="EOY24277.1" /db_xref="TAIR:AT4G17430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1JPM5" /translation="MFNLNRTIATPKLWNKKKSLQQQQPRRSPFFFLSLSLLSLLVFF FLTYISIPKSLFSTSSKTVNAALSPQYPHCTTQIPGEKFLWYAPHSGFSNQLSEFKNA ILMAGILNRTLIVPPILDHHAVVLGSCPKFRVQSAKEIRLSVWDHINELIRSERLLCF NRLCSTLWRQHVVKFDWRSQRYITRDIQESSITNQLQYWLTPFGVPSFCFVYIFTSLC RYVSMADIIDISSLLSSSLVRAIDFRVFVSLWCGLNMDLVCSNELNAQQSMVGSLRQC GSLLSGIDGNIDRCLFAVDEDCRTTVWTYQNDEVDGVLDSFQPDEQLKNKKKISYVRR RRNVYKTLGPGSEAESATVLAFGSLFTAPYKGSDLYIDIQKAPGDLKIKSLIKKIEFL PFVPEIISSGKQFAMQSIKAPFLCAQLRLLDGQFKNHWKATFLGLKQKLDSLRQAGSR PIHIFVMTDLPQGNWTGSYLGDLARDSANFKLYFLREDLFVMKTAKKLALAGHGLRFE SVPASLDAVAKLEKHCSPDIVPDVLLYIEETVCSCASLGFVGTAGSTIAETIEVMRKY GSCSIPTPTTS" CDS join(30378907..30379373,30379881..30380958) /locus_tag="TCM_015927" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29869.m001137" /codon_start=1 /product="O-fucosyltransferase family protein, putative isoform 2" /protein_id="EOY24278.1" /db_xref="TAIR:AT4G17430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1JPM5" /translation="MFNLNRTIATPKLWNKKKSLQQQQPRRSPFFFLSLSLLSLLVFF FLTYISIPKSLFSTSSKTVNAALSPQYPHCTTQIPGEKFLWYAPHSGFSNQLSEFKNA ILMAGILNRTLIVPPILDHHAVVLGSCPKFRVQSAKEIRLSVWDHINELIRSERYVSM ADIIDISSLLSSSLVRAIDFRVFVSLWCGLNMDLVCSNELNAQQSMVGSLRQCGSLLS GIDGNIDRCLFAVDEDCRTTVWTYQNDEVDGVLDSFQPDEQLKNKKKISYVRRRRNVY KTLGPGSEAESATVLAFGSLFTAPYKGSDLYIDIQKAPGDLKIKSLIKKIEFLPFVPE IISSGKQFAMQSIKAPFLCAQLRLLDGQFKNHWKATFLGLKQKLDSLRQAGSRPIHIF VMTDLPQGNWTGSYLGDLARDSANFKLYFLREDLFVMKTAKKLALAGHGLRFESVPAS LDAVAKLEKHCSPDIVPDVLLYIEETVCSCASLGFVGTAGSTIAETIEVMRKYGSCSI PTPTTS" mobile_element complement(30381946..30382888) /note="source:scaffold_1_CACTA_0016 1415 2388" /mobile_element_type="transposon:TIR/CACTA" gene 30384938..30391896 /locus_tag="TCM_015928" /note="dbxref CacaoGD:Thecc1EG015928" mRNA join(30384938..30385314,30386466..30386574, 30386661..30386722,30386970..30387179,30387447..30387534, 30387606..30387768,30388129..30388327,30388815..30389012, 30389233..30389364,30389631..30389751,30390072..30390182, 30390487..30390556,30390827..30391010,30391100..30391896) /locus_tag="TCM_015928" /product="Acyl-CoA oxidase 1" /inference="alignment:exonerate-protein:2:frave:gene08871" /inference="similar to AA sequence:frave:gene08871" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9805t3" CDS join(30385177..30385314,30386466..30386574, 30386661..30386722,30386970..30387179,30387447..30387534, 30387606..30387768,30388129..30388327,30388815..30389012, 30389233..30389364,30389631..30389751,30390072..30390182, 30390487..30390556,30390827..30391010,30391100..30391309) /locus_tag="TCM_015928" /note="dbxref frave:gene08871" /codon_start=1 /product="Acyl-CoA oxidase 1" /protein_id="EOY24279.1" /db_xref="TAIR:AT4G16760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65202" /translation="MEALDYHAGERSKAEFDVEEMKIVWAGSRHAYEISDRIARLVAS DPVFRKDNRTMLSRKDLFKDTLKKAAHAWKRIIELRLSEEEASRMRFFVDQPAFTDLH WGMFIPAIKGQGTEEQQQKWLPVAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTD EFVIHSPTLTSSKWWPGGLGKASTHAVVYARLITDGQDHGVHGFIVQLRSLDDHLPLP GITVGDIGMKFGSGAYNSMDNGVLRFDHVRIPRDQMLMRVSQVTREGKYMHSDVPRQL VYGTMVYVRQQIVLDASCALSRAVCIATRYSAVRRQFGSQNGGPETQVINYKTQQSRL FPLLASAYAFRFVGEWLNWLYTDVTQRLQANDFSTLSEAHACTAGLKSLTTTATADAI EECRKLCGGHGYLSSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVAQLGSEKK PVGTTAYMGRAEYLMQCHCDVQRAEDWLKPSVIVEAFEARAARMSVACAKSLSKFSNP EEGFAELSADLVEAAVAHCQLIVVSKFIEKLQRDIPGKGVKRQMEILCNVYALSILHK HLGDFVSTGCITPKQGALANEQLRLLYTQVRPNAIALVDAFNYTDHYLSSVLGRYDGN VYAKLYEEAWKDPLNDTVVPDGYHEYIRPILKQQLRTARL" gene 30392242..30404189 /locus_tag="TCM_015929" /note="dbxref CacaoGD:Thecc1EG015929" mRNA join(30392242..30393007,30393092..30393419, 30403817..30404189) /locus_tag="TCM_015929" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15540.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15540.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9808t1" CDS join(30392346..30393007,30393092..30393335) /locus_tag="TCM_015929" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24280.1" /db_xref="Phytozome:POPTR_0001s15540.1" /translation="MPGIGTLVDLLLFYTLERVLFNRMVGSVGKNSQQVKRAMALWLM LEEIGYHDLIRMIHSYDDKTIEALFNESLRCLEFIQPNAAPPTESHDTRVFLGLFDEP MNFRFFYYNREFMYKRYVHIMEIVCDKIFGENAAIEVDESGLKPVARPLGEGSTTSQA STESNQLLLNQDSEAPKLSNLNPGANEFNPVQTPEDTRTMFLTFSKGYPLSREEIIYF FTSKWGEVVQDVFIELTHPGQDPQFGRIVFTTSLVIPWVLNGQAKAKFFVNRKHLWVR VYVPRYRGRRKFIKWYNNSRKYYSF" mobile_element 30394039..30394103 /note="source:scaffold_1_CACTA_0006 8466 8540" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30394104..30394126 /note="source:CACAO_M_E42343_F106_scaffold_5 6735 6825" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30397625..30397728) /note="source:scaffold_9_CACTA_0946 4888 4989" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30397732..30397798 /note="source:CACAO_on_E86_scaffold_1 2 69" /mobile_element_type="transposon:TIR/hAT" mobile_element 30397740..30397806 /note="source:scaffold_5_CACTA_0607 9594 9661" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30397921..30398059) /note="source:scaffold_1_CACTA_0004 2 141" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30400541..30400620 /note="source:scaffold_4_CACTA_0483 978 1137" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30400621..30400713 /note="source:CACAO_Helitron_SS_E51_scaffold_6 362 451" /mobile_element_type="transposon:Helitron" mobile_element 30400714..30400726 /note="source:scaffold_4_CACTA_0483 1138 1167" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30402732..30403677 /note="source:scaffold_4_CACTA_0511 12915 13832" /mobile_element_type="transposon:TIR/CACTA" gene 30404383..30405529 /locus_tag="TCM_015930" /note="dbxref CacaoGD:Thecc1EG015930" mRNA 30404383..30405529 /locus_tag="TCM_015930" /product="Integrase-type DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g15310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044478t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15550.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2944t2_C2" CDS 30404433..30405146 /locus_tag="TCM_015930" /note="paralog of Thecc1EG044478t1" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein, putative" /protein_id="EOY24281.1" /db_xref="Phytozome:POPTR_0001s15550.1" /db_xref="TAIR:AT2G35700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PL80" /translation="MEVPLFAEFETQSSASSSSSPLASESSTRFKSKKVEKVKNANES KRKVKNDEVEGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVA ALTIKGKSAYLNFPEIAHELPRPVSASPKDIQAAAAKAATLNYPKSHEVEAELSQVDQ MFPRSPASTVTSHDTQDSSSSPLINNDDAFIDLPDLLLDMNHQIDEFWGSLSWQLPAT DDPVENGFGYEEPCLWEYC" mobile_element 30411632..30411725 /note="source:scaffold_4_CACTA_0511 5704 5799" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30411646..30411728) /note="source:INTACT433_F212_scaffold_1-int 3054 3136" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 30412643..30412846 /note="source:scaffold_2_CACTA_0248 14649 14835" /mobile_element_type="transposon:TIR/CACTA" gene 30412871..30423650 /locus_tag="TCM_015931" /note="dbxref CacaoGD:Thecc1EG015931" mRNA join(30412871..30412967,30416331..30417953, 30418788..30418934,30419231..30419347,30419453..30420339, 30423299..30423650) /locus_tag="TCM_015931" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15560.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15560.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9821t1" mobile_element complement(30413448..30414440) /note="source:scaffold_4_CACTA_0482 4798 5900" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30414360..30414680) /note="source:CACAO_on_E545_scaffold_5 2 375" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30414580..30414709 /note="source:scaffold_1_CACTA_0001 8394 8519" /mobile_element_type="transposon:TIR/CACTA" mRNA join(30416285..30417944,30418788..30418934, 30419231..30419347,30419453..30420376) /locus_tag="TCM_015931" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15560.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15560.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1155t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9821t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc908t2" CDS join(30416436..30417953,30418788..30418934, 30419231..30419347,30419453..30420061) /locus_tag="TCM_015931" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24282.1" /db_xref="Phytozome:POPTR_0001s15560.1" /db_xref="TAIR:AT5G47400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JX48" /translation="MLPHSYTFDSLSQTQDLTSAILASNTPTTISATCASIDSFLHSH SPDQSRHFFSITFPTLICKLFGFDDATSPSPPPPPRKLQHPQSNGWIELASQSNHPDF SANIFSLLSPNGTLMNSISAVDRHSLVKYVFPIERLPVWVRFMLSNEKACRVLSDLCR LFKGKVKEDSIKGSLCQIQLNVIEYYMFWFAYYPVCKGNSENLDSNSVKRSKKFRLEN WTHSIRGFSGLNKREMEQKFEGNLYIQLLYAYLHAFVPIFDLGAHQPYRSSILNYSLK CDGSVIFRAEFLVNVFVHYWLVDNDFSPLPVNVCKSFGVSFPFRSVLGETPPTSGLGE AVKLFVKYLNLSSVISTDGFGKIEHSESPSWRVSGGFDSGKSRDVVSLCSVGSWNSWI QRPLYRFILRTFLFCPVGSSIKNASQVFSVWVTYMEPWTVSLDDFAELDAIVNGSSKD VRKQELQSEASGYLPLWQGYVLSNYLYYSSLVMHFIGFAHKFLHTDPEVIVDMVLKVI SLLTSSKELVDLIKNVDTVFHSKQAVSSKSTLNSTYRVVPSIQEQLQDWEDGLCESDA DGSFLHENWNKDLRLFSDGEDGGQQLLQLFIMRAEAELQGISGDNLSHGLKLIDSLKA KVGYLFGGSMVKPIPISPELRQPQHLRDEIFKPRRVGNQTLANITYKGDWMKRPISDD EVAWLAKLLIWLSSWLNESLGLNCPENTDVGSKWSYVDVPGDAASASGPGEAMKTLVC LMGSWLLMMGAMTVRLMRKHGLRVNLRVLASKKVVMVLLLSVVFSVFKKAFGLFHR" CDS join(30416436..30417944,30418788..30418934, 30419231..30419347,30419453..30420061) /locus_tag="TCM_015931" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24283.1" /db_xref="Phytozome:POPTR_0001s15560.1" /db_xref="TAIR:AT5G47400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JX48" /translation="MLPHSYTFDSLSQTQDLTSAILASNTPTTISATCASIDSFLHSH SPDQSRHFFSITFPTLICKLFGFDDATSPSPPPPPRKLQHPQSNGWIELASQSNHPDF SANIFSLLSPNGTLMNSISAVDRHSLVKYVFPIERLPVWVRFMLSNEKACRVLSDLCR LFKGKVKEDSIKGSLCQIQLNVIEYYMFWFAYYPVCKGNSENLDSNSVKRSKKFRLEN WTHSIRGFSGLNKREMEQKFEGNLYIQLLYAYLHAFVPIFDLGAHQPYRSSILNYSLK CDGSVIFRAEFLVNVFVHYWLVDNDFSPLPVNVCKSFGVSFPFRSVLGETPPTSGLGE AVKLFVKYLNLSSVISTDGFGKIEHSESPSWRVSGGFDSGKSRDVVSLCSVGSWNSWI QRPLYRFILRTFLFCPVGSSIKNASQVFSVWVTYMEPWTVSLDDFAELDAIVNGSSKD VRKQELQSEASGYLPLWQGYVLSNYLYYSSLVMHFIGFAHKFLHTDPEVIVDMVISLL TSSKELVDLIKNVDTVFHSKQAVSSKSTLNSTYRVVPSIQEQLQDWEDGLCESDADGS FLHENWNKDLRLFSDGEDGGQQLLQLFIMRAEAELQGISGDNLSHGLKLIDSLKAKVG YLFGGSMVKPIPISPELRQPQHLRDEIFKPRRVGNQTLANITYKGDWMKRPISDDEVA WLAKLLIWLSSWLNESLGLNCPENTDVGSKWSYVDVPGDAASASGPGEAMKTLVCLMG SWLLMMGAMTVRLMRKHGLRVNLRVLASKKVVMVLLLSVVFSVFKKAFGLFHR" mobile_element 30420384..30420594 /note="source:MITE_CACTA_20 9 267" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(30422249..30423295) /note="source:MITE_hAT_19 1 1087" /mobile_element_type="transposon:TIR/MITE" gene 30423881..30425447 /locus_tag="TCM_015933" /note="dbxref CacaoGD:Thecc1EG015933" mRNA join(30423881..30424166,30424235..30424433, 30424534..30424663,30424826..30425447) /locus_tag="TCM_015933" /product="Myb domain protein 5" /inference="alignment:exonerate-protein:2:frave:gene08880" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029126t1" /inference="similar to AA sequence:Phytozome:GSVIVT01006275001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9808t1" CDS join(30424026..30424166,30424235..30424433, 30424534..30424663,30424826..30425126) /locus_tag="TCM_015933" /note="paralog of Thecc1EG029126t1" /codon_start=1 /product="Myb domain protein 5" /protein_id="EOY24284.1" /db_xref="Phytozome:GSVIVT01006275001" /db_xref="TAIR:AT5G14750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H852" /translation="MGWTLTDHSILSHQAKLSHVLYSTSLLVFPVKVTLTXXXXXXXX XXXYLLLSLSLSLSLSLCPFSQWQMAPKKDGVSKRVMNKGAWTAEEDRKLAEYIKIHG AKRWKTIAIKAGLSRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHKLLGNRWSL IAGRLPGRTDNEIKNYWNSHLSKKINQEKTEQTSTSEQTVPQQTWETVQMVEEVAKGS DENLELSFDANEFFDFSTQGCFGLDWVNKFLELDDQTP" gene complement(30426574..30430544) /locus_tag="TCM_015934" /note="dbxref CacaoGD:Thecc1EG015934" mRNA complement(join(30426574..30426589,30427016..30427936, 30428099..30428447,30428558..30428694,30428811..30429212)) /locus_tag="TCM_015934" /product="Exostosin family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037815t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07660.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9610t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9610t1" mRNA complement(join(30426762..30427936,30428099..30428447, 30428558..30428694,30428751..30429380,30430398..30430544)) /locus_tag="TCM_015934" /product="Exostosin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037815t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07660.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9610t1" CDS complement(join(30427250..30427936,30428099..30428447, 30428558..30428694,30428751..30429242)) /locus_tag="TCM_015934" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037815t1" /codon_start=1 /product="Exostosin family protein isoform 1" /protein_id="EOY24285.1" /db_xref="Phytozome:POPTR_0003s07660.1" /db_xref="TAIR:AT4G16745.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7MCC1" /translation="MRKLLKHVAVALIRELIRHCRWRKIDWRKLFFAGAVMSIAGVVL PTLLFTYRRNIWFLPSLVNDSSHQSLNGSVHLSNNLRETRSERFQLLSTAPSVSFNSS TEAKGRHRVSRRRRKRRRRSKIDDGPQVITPPPRRTVSPRLQVEILESFIPLLLFLFH FTCERYLRSLSPDESLLYAKKEIEHAPAVDNDDDSYLYAPVFRNVSIFERSCELMEMI LKVYIYPDGEKPIFHEPHLLGIYASEGWFMKLLEADREFVTQDPEKAHLFYLPYSSRQ LELALYVPNSHNLRPLSIFIRDYVNMIAAKYPFWNRTHGSDHFLVACHDWGPYTTSAH KELRNNTIKAVCNADLSENFIAGKDVSLPETAIRNPGRPLRYIGRGNRVSQRPILAFF AGNMHGRVRPKLLKYWHNKEEDMKIYGPLPIRVSRNMTYIQHMKSSKYCICPMGYEVN SPRIVEAIYYECVPVIIADNFVLPFNEVLDWNAFSVVVAEKDIPKLKEILLAIPLRRY LKMQINVKMVQKHFLWNPRPMRYDLFHMILHSIWFNRLNQIQISQD" CDS complement(join(30427250..30427936,30428099..30428447, 30428558..30428694,30428811..30429134)) /locus_tag="TCM_015934" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037815t1" /codon_start=1 /product="Exostosin family protein isoform 2" /protein_id="EOY24286.1" /db_xref="Phytozome:POPTR_0003s07660.1" /db_xref="TAIR:AT4G16745.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7MCC1" /translation="MSIAGVVLPTLLFTYRRNIWFLPSLVNDSSHQSLNGSVHLSNNL RETRSERFQLLSTAPSVSFNSSTEAKGRHRVSRRRRKRRRRSKIDDGPQVITPPPRRT VSPRLQRYLRSLSPDESLLYAKKEIEHAPAVDNDDDSYLYAPVFRNVSIFERSCELME MILKVYIYPDGEKPIFHEPHLLGIYASEGWFMKLLEADREFVTQDPEKAHLFYLPYSS RQLELALYVPNSHNLRPLSIFIRDYVNMIAAKYPFWNRTHGSDHFLVACHDWGPYTTS AHKELRNNTIKAVCNADLSENFIAGKDVSLPETAIRNPGRPLRYIGRGNRVSQRPILA FFAGNMHGRVRPKLLKYWHNKEEDMKIYGPLPIRVSRNMTYIQHMKSSKYCICPMGYE VNSPRIVEAIYYECVPVIIADNFVLPFNEVLDWNAFSVVVAEKDIPKLKEILLAIPLR RYLKMQINVKMVQKHFLWNPRPMRYDLFHMILHSIWFNRLNQIQISQD" mobile_element 30430678..30430823 /note="source:scaffold_1_CACTA_0005 6524 6681" /mobile_element_type="transposon:TIR/CACTA" gene 30432589..30436504 /locus_tag="TCM_015935" /note="dbxref CacaoGD:Thecc1EG015935" mRNA join(30432589..30432809,30433238..30433297, 30433409..30433448,30433956..30434134,30434284..30434322, 30434509..30434595,30434768..30434828,30435187..30435311, 30435636..30435727,30435885..30436504) /locus_tag="TCM_015935" /product="Tryptophan RNA-binding attenuator protein-like" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006273001" /inference="similar to AA sequence:Phytozome:Glyma05g04890.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15222t00001" CDS join(30432762..30432809,30433238..30433297, 30433409..30433448,30433956..30434134,30434284..30434322, 30434509..30434595,30434768..30434828,30435187..30435311, 30435636..30435727,30435885..30435999) /locus_tag="TCM_015935" /codon_start=1 /product="Tryptophan RNA-binding attenuator protein-like" /protein_id="EOY24287.1" /db_xref="Phytozome:Glyma05g04890.2" /db_xref="TAIR:AT5G47420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94GQ4" /translation="MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQIVQIMLKPQEK VIAKPGSMCFMSGSIEMENTYVPENEVGMWQWLFGKSITSISLRNPGPNDGFVGIAAP SLARILPIDLAMFGGELLCQPDAFLCSINDVKVNNTVDQRPRNVVTGVEGFLRQKLSG QGLAFIVAGGSVVQKNLEVGEVLAVDVSCIVALTASIDVQIKFNGPMRRAVFGGDNLV TAVLTGPGIVFIQSLPFHRFSQRIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSL ILTDV" gene 30437403..30445118 /locus_tag="TCM_015936" /note="dbxref CacaoGD:Thecc1EG015936" mRNA join(30437403..30438265,30438899..30438995, 30439198..30439279,30439432..30439598,30439706..30439782, 30440281..30440337,30440427..30440583,30440675..30440823, 30440903..30441067,30441162..30441461,30441874..30441915, 30442025..30442274,30442482..30442594,30442847..30442922) /locus_tag="TCM_015936" /product="DWNN domain isoform 2" /inference="alignment:exonerate- protein:2:ricco:30101.m000384" /inference="similar to AA sequence:Phytozome:POPTR_0003s07640.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc623t4; inference alignment:Newbler:10:TSA:cgbaB_g04264t00001" mRNA join(30437582..30438265,30438899..30438995, 30439198..30439279,30439432..30439598,30439706..30439782, 30440281..30440337,30440427..30440583,30440675..30440823, 30440903..30441067,30441162..30441461,30441874..30441915, 30442025..30442274,30442482..30442601,30442847..30442922, 30444192..30445028) /locus_tag="TCM_015936" /product="DWNN domain isoform 1" /inference="alignment:exonerate- protein:2:ricco:30101.m000384" /inference="similar to AA sequence:Phytozome:POPTR_0003s07640.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04264t00001" CDS join(30438100..30438265,30438899..30438995, 30439198..30439279,30439432..30439598,30439706..30439782, 30440281..30440337,30440427..30440583,30440675..30440823, 30440903..30441067,30441162..30441461,30441874..30441915, 30442025..30442274,30442482..30442601,30442847..30442922, 30444192..30444845) /locus_tag="TCM_015936" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DWNN domain isoform 1" /protein_id="EOY24288.1" /db_xref="Phytozome:POPTR_0003s07640.1" /db_xref="TAIR:AT5G47430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SYZ6" /translation="MAVYYKFKSARDFDSIAMDGPFISVGTLKEKIFESKHLGRGTDF DLVVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVAAQEPKVENQIENAQPEK SNFLDADSSVPKYPEDSEWDEFGNDLYSIPETLPVQSSNPLPDAPPTNKADEDSKIKA LIDTPALDWQRQGADGFGPGRGFGRGMGGRMGGRGFGLERKTPPQGYVCHRCKVPGHF IQHCPTNGDPNYDIKRVKPPTGIPKSMLMATPDGSYALPSGAVAVLKPNEAAFEKEIE GLPSTRSVGDLPPELHCPLCKEVMKDAVLTSKCCFKSFCDKCIRDHIISKSMCVCGAT NILADDLLPNKTLRDTINRILESGNSSADNAGSAFQVQDMESARCPQPKIPSPTTSAA SKGEQKPVSAKEESPSVKDKANEVKVAIPPQQVVEKVKIAKPADASEATLESMSVKEP ASQGSAPLAEEEVQQKVVSGEAGKKKKKKKVRLPANDLQWKTPQDLAAENYMMSMGPS AYNPYWAGMQPGMDGFMGPYAGAMPYMGGYGLSPLDVPFGGVMPPDPFGAQSYMFPPI PPQRDLAEFGMGMNVAPPIMSREEFEARQADLRRKRENERRGEREFSRDREFSREVSS SGDVSSLKSKSKPIPQMSGGDHRHEHLRHRSERTSPERSLRDHDAPPRPLKRKADQHH DRECDHDYDYDDRDRDRERQHHHRSESSKLAPETATKATSMATTAAMDKKQKGSVFSR ISFPEGEVSKKRKLSSDAPISSGHHKPSSNGYYDDYKTSSAATKAVSATSGGVRKSTS SNAVDYESSDDDRHFKRKPSRYESSPPPSAEWEEEPRHSRGSRERERSGYSKHR" CDS join(30438100..30438265,30438899..30438995, 30439198..30439279,30439432..30439598,30439706..30439782, 30440281..30440337,30440427..30440583,30440675..30440823, 30440903..30441067,30441162..30441461,30441874..30441915, 30442025..30442274,30442482..30442594,30442847..30442884) /locus_tag="TCM_015936" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DWNN domain isoform 2" /protein_id="EOY24289.1" /db_xref="Phytozome:POPTR_0003s07640.1" /db_xref="TAIR:AT5G47430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SYZ6" /translation="MAVYYKFKSARDFDSIAMDGPFISVGTLKEKIFESKHLGRGTDF DLVVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVAAQEPKVENQIENAQPEK SNFLDADSSVPKYPEDSEWDEFGNDLYSIPETLPVQSSNPLPDAPPTNKADEDSKIKA LIDTPALDWQRQGADGFGPGRGFGRGMGGRMGGRGFGLERKTPPQGYVCHRCKVPGHF IQHCPTNGDPNYDIKRVKPPTGIPKSMLMATPDGSYALPSGAVAVLKPNEAAFEKEIE GLPSTRSVGDLPPELHCPLCKEVMKDAVLTSKCCFKSFCDKCIRDHIISKSMCVCGAT NILADDLLPNKTLRDTINRILESGNSSADNAGSAFQVQDMESARCPQPKIPSPTTSAA SKGEQKPVSAKEESPSVKDKANEVKVAIPPQQVVEKVKIAKPADASEATLESMSVKEP ASQGSAPLAEEEVQQKVVSGEAGKKKKKKKVRLPANDLQWKTPQDLAAENYMMSMGPS AYNPYWAGMQPGMDGFMGPYAGAMPYMGGYGLSPLDVPFGGVMPPDPFGAQSYMFPPI PPQRDLAEFGMGMNVAPPIMSREEFEARQADLRRKRENERRGSSLEIGNSVEK" mRNA join(30440273..30440337,30440427..30440583, 30440675..30440823,30440903..30441067,30441162..30441461, 30441874..30441915,30442025..30442274,30442482..30442601, 30442847..30442922,30444192..30445118) /locus_tag="TCM_015936" /product="DWNN domain isoform 3" /inference="alignment:exonerate- protein:2:ricco:30101.m000384" /inference="similar to AA sequence:Phytozome:POPTR_0003s07640.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc624t14; inference alignment:Newbler:10:TSA:cgbaB_g04264t00001" CDS join(30440513..30440583,30440675..30440823, 30440903..30441067,30441162..30441461,30441874..30441915, 30442025..30442274,30442482..30442601,30442847..30442922, 30444192..30444845) /locus_tag="TCM_015936" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DWNN domain isoform 3" /protein_id="EOY24290.1" /db_xref="Phytozome:POPTR_0003s07640.1" /db_xref="TAIR:AT4G17410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SYZ6" /translation="MLMATPDGSYALPSGAVAVLKPNEAAFEKEIEGLPSTRSVGDLP PELHCPLCKEVMKDAVLTSKCCFKSFCDKCIRDHIISKSMCVCGATNILADDLLPNKT LRDTINRILESGNSSADNAGSAFQVQDMESARCPQPKIPSPTTSAASKGEQKPVSAKE ESPSVKDKANEVKVAIPPQQVVEKVKIAKPADASEATLESMSVKEPASQGSAPLAEEE VQQKVVSGEAGKKKKKKKVRLPANDLQWKTPQDLAAENYMMSMGPSAYNPYWAGMQPG MDGFMGPYAGAMPYMGGYGLSPLDVPFGGVMPPDPFGAQSYMFPPIPPQRDLAEFGMG MNVAPPIMSREEFEARQADLRRKRENERRGEREFSRDREFSREVSSSGDVSSLKSKSK PIPQMSGGDHRHEHLRHRSERTSPERSLRDHDAPPRPLKRKADQHHDRECDHDYDYDD RDRDRERQHHHRSESSKLAPETATKATSMATTAAMDKKQKGSVFSRISFPEGEVSKKR KLSSDAPISSGHHKPSSNGYYDDYKTSSAATKAVSATSGGVRKSTSSNAVDYESSDDD RHFKRKPSRYESSPPPSAEWEEEPRHSRGSRERERSGYSKHR" gene 30445849..30447742 /locus_tag="TCM_015937" /note="dbxref CacaoGD:Thecc1EG015937" mRNA join(30445849..30446178,30446364..30446802, 30447720..30447742) /locus_tag="TCM_015937" /product="Pentatricopeptide repeat-containing-like protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s27870.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04440.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2815t1" CDS join(30446079..30446178,30446364..30446782) /locus_tag="TCM_015937" /codon_start=1 /product="Pentatricopeptide repeat-containing-like protein" /protein_id="EOY24291.1" /db_xref="Phytozome:POPTR_0006s04440.1" /db_xref="TAIR:AT5G03990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGG4" /translation="MSYYQRRYRRESYGHGGPRMSRPNFPQRVLDDTGSSWQPLPAWE RRFCVVVGAMPWKRFVQAKNNLYRTDKVYEWNDSAGKKAFDEAKQRFWAEFHGFPCKK HLPSADLYIDANIDWNPEIDPELVSGIRSSSDNEGKEVTFNKRRAANEVVKEIDYFSI PLDQIKATGWDE" gene 30448081..30450012 /locus_tag="TCM_015938" /note="dbxref CacaoGD:Thecc1EG015938" mRNA join(30448081..30448778,30449175..30449372, 30449478..30450012) /locus_tag="TCM_015938" /product="Ribosomal protein L23/L15e family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014898t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15590.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9982t1" mRNA join(30448091..30448145,30448612..30448778, 30449175..30449372,30449478..30449940) /locus_tag="TCM_015938" /product="Ribosomal protein L23/L15e family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014898t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15590.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00719t00001_C1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9982t1" mRNA join(30448103..30448145,30448516..30448778, 30449175..30449372,30449478..30450011) /locus_tag="TCM_015938" /product="Ribosomal protein L23/L15e family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014898t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15590.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11366t00001; alternateUTRof:Thecc1EG015938t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9982t1" CDS join(30448142..30448145,30448612..30448778, 30449175..30449372,30449478..30449723) /locus_tag="TCM_015938" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG014898t1" /codon_start=1 /product="Ribosomal protein L23/L15e family protein isoform 3" /protein_id="EOY24294.1" /db_xref="Phytozome:POPTR_0001s15590.1" /db_xref="TAIR:AT4G16720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O17445" /translation="MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTR PDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVA EERAGRKLGGLRVVNSYWINEDSTYKYFEVILVDVAHNAIRNDPRINWICNPVHKHRE LRGLTSAGKKNRGLHGKGHLYHKNRPSRRATWKRNNTLSLRRYR" CDS join(30448602..30448778,30449175..30449372, 30449478..30449723) /locus_tag="TCM_015938" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014898t1" /codon_start=1 /product="Ribosomal protein L23/L15e family protein isoform 1" /protein_id="EOY24292.1" /db_xref="Phytozome:POPTR_0001s15590.1" /db_xref="TAIR:AT4G16720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O17445" /translation="MNVGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHP TRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRS VAEERAGRKLGGLRVVNSYWINEDSTYKYFEVILVDVAHNAIRNDPRINWICNPVHKH RELRGLTSAGKKNRGLHGKGHLYHKNRPSRRATWKRNNTLSLRRYR" CDS join(30448602..30448778,30449175..30449372, 30449478..30449723) /locus_tag="TCM_015938" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014898t1" /codon_start=1 /product="Ribosomal protein L23/L15e family protein isoform 1" /protein_id="EOY24293.1" /db_xref="Phytozome:POPTR_0001s15590.1" /db_xref="TAIR:AT4G16720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O17445" /translation="MNVGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHP TRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRS VAEERAGRKLGGLRVVNSYWINEDSTYKYFEVILVDVAHNAIRNDPRINWICNPVHKH RELRGLTSAGKKNRGLHGKGHLYHKNRPSRRATWKRNNTLSLRRYR" gene complement(30450076..30459907) /locus_tag="TCM_047017" /note="dbxref CacaoGD:Thecc1EG047017" mRNA complement(join(30450076..30450436,30450807..30450929, 30451006..30451120,30451255..30451353,30451430..30451482, 30452098..30452254,30452713..30452771,30452939..30453006, 30453092..30453235,30453904..30453967,30454744..30454794, 30454897..30455036,30455145..30455284,30455724..30455809, 30455896..30456041,30456167..30456239,30456965..30457040, 30457280..30457387,30457539..30457585,30457808..30457853, 30458662..30458774,30458871..30458906,30459004..30459207, 30459804..30459907)) /locus_tag="TCM_047017" /product="MUTS-like protein 4" /inference="alignment:exonerate- protein:2:TAIR:AT4G17380.1" /inference="similar to AA sequence:TAIR:AT4G17380.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1247t3" CDS complement(join(30450272..30450436,30450807..30450929, 30451006..30451120,30451255..30451353,30451430..30451482, 30452098..30452254,30452713..30452771,30452939..30453006, 30453092..30453235,30453904..30453967,30454744..30454794, 30454897..30455036,30455145..30455284,30455724..30455809, 30455896..30456041,30456167..30456239,30456965..30457040, 30457280..30457387,30457539..30457585,30457808..30457853, 30458662..30458774,30458871..30458906,30459004..30459207, 30459804..30459869)) /locus_tag="TCM_047017" /codon_start=1 /product="MUTS-like protein 4" /protein_id="EOY24295.1" /db_xref="TAIR:AT4G17380.1" /translation="MEDDGGERSSFVIGLIENRAKEVGVAAFDLRSASLHLSQYIETS SSYQNTKTLLHFYDPMMIIVPPNKLAPEGMVGVSELVDRFYASVKKIVMARGCFDDTK GAMLIKNLAAREPSALGLDSYYKQYYLCLASASATIKWIEAEKGVIVTNHSLSVTFNG SFDHMNIDATSVQNLEIIEPFHSALWGTNNKKRSLFHMLKTTKTVGGTRLLRANLLQP LKDIETINTRLDCLDELMSNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTNEVLV VENTRKSQMLISSIILLKTALDALPLLSKVLKDAKSFLLANVYKSICENEKYADIRKR IGVVIDEDVLHARVPFVARTQQCFAVKAGIDGLLDIARRSFCDTSEAIHNLANKYREE FKMPNLKLPFNSRQGFYFSIPQKDIQGQLPSKFIQVVKHGNNVHCSTLELASLNVRNK SAAGECYIRTEVCLEALVDTIREDISVLTLLAEVLCLLDMIVNSFSHTISTKPVDRYI RPEFTDDGPLAIDAGRHPILESIHCDFVPNNIFISEASNMVIAMGPNMSGKSTYLQQV CLIVILAQIGCYVPARFATIRVVDRIFTRMGTMDNLESNSSTFMTEMKETAFVMQNVS QRSLIVMDELGRATSSSDGLAIAWSCCEHLLSLTAYTIFATHMENLSELATIYPNVKI LHFDVDIRNSRLDFKFQLKDGPRHVAHYGLLLAEVAGLPSSVIETARSITSRITDKEV KRMDVNCLHYNQIQLVYHVSQRLICLKYSNHDEDSIRQALQSLKESYIDGRL" gene complement(30460200..30462763) /locus_tag="TCM_047018" /note="dbxref CacaoGD:Thecc1EG047018" mRNA complement(join(30460200..30460491,30460637..30460734, 30460932..30461066,30461155..30461319,30461393..30461557, 30462230..30462400,30462515..30462763)) /locus_tag="TCM_047018" /product="Oxidoreductase family protein" /inference="alignment:exonerate- protein:2:ricco:30101.m000379" /inference="similar to AA sequence:ricco:30101.m000379" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08943t00001" CDS complement(join(30460278..30460491,30460637..30460734, 30460932..30461066,30461155..30461319,30461393..30461557, 30462230..30462400,30462515..30462697)) /locus_tag="TCM_047018" /note="dbxref ricco:30101.m000379" /codon_start=1 /product="Oxidoreductase family protein" /protein_id="EOY24296.1" /db_xref="TAIR:AT4G17370.1" /translation="MAITETVKYGIIGVGMMGREHLINLHHLRIQGVAVVCIADPHVP SQQLALELAQSFDWPLKVFSGHQELLDSGLCDVVVVSSPNMTHYQILMDILNHPKAHH VLVEKPLCTTVADCRKVVNAARKRLDVLVQVGLEYRYMPPVAKLIEIVKGGTLGQVKM VAIREHRFPFLVKVNNWNRFNANTGGTLVEKCCHFFDLMRLFAGANPVRVMASGAVDV NHKDEIYDGKVPDIIDNAYVIVEFDNGARGMLDLCMFAEGSKNEQEISVVGHSGKGEA FVPENIVLYGSRVGGRDGFQTLKAEDERIKYEGLHHGSSYLEHLNFLSAIREKGAKTP AVDLQDGLISVAMGVAAQVSIEKGRFVTIEEVLGARNCEPST" gene 30464291..30468864 /locus_tag="TCM_015941" /note="dbxref CacaoGD:Thecc1EG015941" mRNA join(30464291..30464633,30464893..30464981, 30465357..30465410,30465543..30465608,30465701..30465761, 30465929..30466038,30466125..30466384,30466577..30466630, 30466716..30466822,30466914..30466981,30467767..30467844, 30467992..30468114,30468331..30468864) /locus_tag="TCM_015941" /product="Phosphatidylserine decarboxylase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07600.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07600.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05852t00001" CDS join(30464474..30464633,30464893..30464981, 30465357..30465410,30465543..30465608,30465701..30465761, 30465929..30466038,30466125..30466384,30466577..30466630, 30466716..30466822,30466914..30466981,30467767..30467844, 30467992..30468114,30468331..30468489) /locus_tag="TCM_015941" /codon_start=1 /product="Phosphatidylserine decarboxylase 1" /protein_id="EOY24297.1" /db_xref="Phytozome:POPTR_0003s07600.1" /db_xref="TAIR:AT4G16700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SXD8" /translation="MKFRLSQHVPMFPPYSHAGHVHIHRRFFSWYAKQFPTTSQARAS VSGGNSDSQGNAFLLPGATVATLLMLGALHARRLYDDKKVEDAREKGVEFEFQPDVKA AFLRMLPLRSISRVWGFLTNVEIPVWLRPHVYRAWARAFHSNLEEAALPLDEYASLRD FFVRTLREGCRPIDPDPYSLVSPVDGTILRFGELKGAGAMIEQVKGFSYSVSSLLGAS SLLPIIAEGHTQDDSSTIEQESSQREKSKKSWWRISLASPKVRETVSACCVYSSNSLD CWTIQDILFPMKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFAGHLFPLNERATRTI RNLYVENERVVLEGLWQQGYMAVAAIGATNIGSIELFIEPELRTNRPRKKLLHSGPPE ECVYKPEGVGVMLKKGEEVAAFNMGSTVVLVFQAPTLKSPKNSNASEFRFSIRRGDRI RVGEAMGRWHDS" gene complement(30469051..30470297) /locus_tag="TCM_015942" /note="dbxref CacaoGD:Thecc1EG015942" mRNA complement(join(30469051..30469561,30469840..30469988, 30470109..30470297)) /locus_tag="TCM_015942" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT4G16695.1" /inference="similar to AA sequence:Phytozome:Glyma17g15210.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9634t2" CDS complement(join(30469543..30469561,30469840..30469988, 30470109..30470114)) /locus_tag="TCM_015942" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24298.1" /db_xref="Phytozome:Glyma17g15210.1" /translation="MPFRRMIEVEPPSPLRYIIGAAIMMLGVVLPVGYMMFRNKRVPS SSSYSKQTNKVLI" gene 30470444..30474088 /locus_tag="TCM_015943" /note="dbxref CacaoGD:Thecc1EG015943" mRNA join(30470444..30471026,30471216..30471328, 30471875..30472025,30472100..30472173,30472292..30472451, 30472725..30472823,30472913..30473012,30473684..30474088) /locus_tag="TCM_015943" /product="Phosphoribosylamine-glycine ligase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004722001" /inference="similar to AA sequence:Phytozome:GSVIVT01004722001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b015407t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g10242t00001" mRNA join(30470444..30471026,30471216..30471328, 30471875..30472025,30472100..30472173,30472292..30472451, 30472725..30472823,30472926..30473012,30473684..30474010) /locus_tag="TCM_015943" /product="Formyltetrahydrofolate deformylase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004722001" /inference="similar to AA sequence:Phytozome:GSVIVT01004722001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10242t00001" mRNA join(30470751..30471026,30471216..30471328, 30471875..30472025,30472100..30472173,30472292..30472451, 30472725..30472823,30472923..30473012,30473684..30474088) /locus_tag="TCM_015943" /product="Formyltetrahydrofolate deformylase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004722001" /inference="similar to AA sequence:Phytozome:GSVIVT01004722001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9640t1; inference alignment:Newbler:10:TSA:cgbaP2_g10242t00001" CDS join(30470886..30471026,30471216..30471328, 30471875..30472025,30472100..30472173,30472292..30472451, 30472725..30472823,30472923..30473012,30473684..30473830) /locus_tag="TCM_015943" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Formyltetrahydrofolate deformylase isoform 3" /protein_id="EOY24301.1" /db_xref="Phytozome:GSVIVT01004722001" /db_xref="TAIR:AT4G17360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUQ5" /translation="MSLTRRVSSSLPQFVGFAKRSFKSYKLPGDPSSSPSLTYGIHIF HCPDEVGIVAKLSECIASRGGNILGADVFVPENKNVFYSRSEFVFDPVKWPREQMDED FMKLSRMYSATRSVVRVPDLDPKFKISVLASKQDHCLVDLLHGWQDRRLPVDITCVIS NHHRDPNTHVMSFLERNNIPYHYLQTTKENKREGEILELVLNTDFLVLARYMQVLSGH FLRTYGKDVINIHHGLLPSFKGGNPCKQQAFDAGVKLIGATSHFVTEELDSGPIIEQM VERVSHRDNLQSFVQKSENLERQCLSKAIRSYCELRVLPYEENRTVVF" CDS join(30470886..30471026,30471216..30471328, 30471875..30472025,30472100..30472173,30472292..30472451, 30472725..30472823,30472926..30473012,30473684..30473830) /locus_tag="TCM_015943" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Formyltetrahydrofolate deformylase isoform 1" /protein_id="EOY24299.1" /db_xref="Phytozome:GSVIVT01004722001" /db_xref="TAIR:AT4G17360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUQ5" /translation="MSLTRRVSSSLPQFVGFAKRSFKSYKLPGDPSSSPSLTYGIHIF HCPDEVGIVAKLSECIASRGGNILGADVFVPENKNVFYSRSEFVFDPVKWPREQMDED FMKLSRMYSATRSVVRVPDLDPKFKISVLASKQDHCLVDLLHGWQDRRLPVDITCVIS NHHRDPNTHVMSFLERNNIPYHYLQTTKENKREGEILELVLNTDFLVLARYMQVLSGH FLRTYGKDVINIHHGLLPSFKGGNPCKQAFDAGVKLIGATSHFVTEELDSGPIIEQMV ERVSHRDNLQSFVQKSENLERQCLSKAIRSYCELRVLPYEENRTVVF" CDS join(30470886..30471026,30471216..30471328, 30471875..30472025,30472100..30472173,30472292..30472451, 30472725..30472823,30472913..30472933) /locus_tag="TCM_015943" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Phosphoribosylamine-glycine ligase, putative isoform 2" /protein_id="EOY24300.1" /db_xref="Phytozome:GSVIVT01004722001" /db_xref="TAIR:AT4G17360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SXD7" /translation="MSLTRRVSSSLPQFVGFAKRSFKSYKLPGDPSSSPSLTYGIHIF HCPDEVGIVAKLSECIASRGGNILGADVFVPENKNVFYSRSEFVFDPVKWPREQMDED FMKLSRMYSATRSVVRVPDLDPKFKISVLASKQDHCLVDLLHGWQDRRLPVDITCVIS NHHRDPNTHVMSFLERNNIPYHYLQTTKENKREGEILELVLNTDFLVLARYMQVLSGH FLRTYGKDVINIHHGLLPSFKGGNPCKQIMLAGF" gene complement(30477086..30479670) /locus_tag="TCM_015944" /note="dbxref CacaoGD:Thecc1EG015944" mRNA complement(join(30477086..30477498,30477710..30477767, 30477860..30477909,30478039..30478215,30478370..30478751, 30479174..30479670)) /locus_tag="TCM_015944" /product="1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-1" /inference="alignment:exonerate- protein:2:ricco:30101.m000376" /inference="similar to AA sequence:ricco:30101.m000376" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12704t00001" CDS complement(join(30477260..30477498,30477710..30477767, 30477860..30477909,30478039..30478215,30478370..30478751, 30479174..30479425)) /locus_tag="TCM_015944" /note="dbxref ricco:30101.m000376" /codon_start=1 /product="1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-1" /protein_id="EOY24302.1" /db_xref="TAIR:AT4G17350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGL4" /translation="MESGFYSASLFGLENLEEDGELKAASSLPSIPQPQTPKEPMEFL SRSWSLSASEISKALAQKQKQFEFDSNPSSFPDTFVAPHIAGKVINSINARRTGSIGK WFHHHRDSGTNTVKKKDKMRAENARLHSAVSVAGLAAGLAAVAAAGNSNGTGSQMSMA LASATELLASHCIELAELAGADHHRVASVVKSAVDIHSAGDLMTLTAAAATALRGEAA LKARLPKEAKKNAAISPYERSMAEAHWSAAFHTQIKEQNPPCEGELLQHTRKGVLRWK GVSVYISKKSQVMIKLKSKHVGGAFSKKNKCIVYGVCDETSAWPYRKERETSEELYFG LKTGQGLLEFKCKSKIHKQRWVDGIQNLLRQVSYAEAAELSLESLSIGDSI" gene complement(30482554..30486309) /locus_tag="TCM_015945" /note="dbxref CacaoGD:Thecc1EG015945" mRNA complement(join(30482554..30483203,30483287..30483328, 30483403..30483504,30483588..30483686,30483860..30483920, 30484020..30484141,30484248..30484333,30484548..30484632, 30484986..30485069,30485306..30485385,30485617..30485680, 30485797..30485865,30485964..30486044,30486180..30486309)) /locus_tag="TCM_015945" /product="ATP-dependent caseinolytic protease/crotonase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005627t1" /inference="similar to AA sequence:ricco:30101.m000373" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2077t1" mRNA complement(join(30482554..30483203,30483287..30483504, 30483588..30483686,30483860..30483920,30484020..30484141, 30484248..30484333,30484548..30484632,30484986..30485069, 30485306..30485385,30485617..30485680,30485797..30485865, 30485964..30486044,30486180..30486309)) /locus_tag="TCM_015945" /product="ATP-dependent caseinolytic protease/crotonase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005627t1" /inference="similar to AA sequence:ricco:30101.m000373" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b015409t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2077t1" CDS complement(join(30483090..30483203,30483287..30483328, 30483403..30483504,30483588..30483686,30483860..30483920, 30484020..30484141,30484248..30484333,30484548..30484632, 30484986..30485069,30485306..30485385,30485617..30485680, 30485797..30485865,30485964..30486044,30486180..30486287)) /locus_tag="TCM_015945" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30101.m000373; paralog of Thecc1EG005627t1" /codon_start=1 /product="ATP-dependent caseinolytic protease/crotonase family protein isoform 1" /protein_id="EOY24303.1" /db_xref="TAIR:AT3G60510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXN4" /translation="MQSFKILSPFFNKHRRFASFTRSLCSLNSSSHYDNLILIEEKGS SRTVILNRPHVLNALTTPMGIFLHKLYKSWERDPTVDLVVIKGNGRAFCSGGDVVQLY QLINEGRVEECKECFRTFYSFMYLLGTYLKPHVAILDGITMGGGAGISVHGSYRVATD KTVFGVPEVLIGFHPDAGASYYLSRLPGYLGEYLALTGDTLTGEEMFACGLATHYSLS TKLPVIETQLSTSARKDFSVVETFLARYSHPRSPNSSSVLHRMEMLNKCFGHGTVEEI IAALEVEAARSKDKWFISTMKKLRAAPPLSLKVSLRSIREGRFQTLEQCLAREYQMTL QAITRQISNDFSEGVRARLVDKCFAPKWDPSCMEKVSEDMVDAYFSALSAYEPELEFV CELPRS" CDS complement(join(30483385..30483504,30483588..30483686, 30483860..30483920,30484020..30484141,30484248..30484333, 30484548..30484632,30484986..30485069,30485306..30485385, 30485617..30485680,30485797..30485865,30485964..30486044, 30486180..30486287)) /locus_tag="TCM_015945" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30101.m000373; paralog of Thecc1EG005627t1" /codon_start=1 /product="ATP-dependent caseinolytic protease/crotonase family protein isoform 2" /protein_id="EOY24304.1" /db_xref="TAIR:AT4G31810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXN4" /translation="MQSFKILSPFFNKHRRFASFTRSLCSLNSSSHYDNLILIEEKGS SRTVILNRPHVLNALTTPMGIFLHKLYKSWERDPTVDLVVIKGNGRAFCSGGDVVQLY QLINEGRVEECKECFRTFYSFMYLLGTYLKPHVAILDGITMGGGAGISVHGSYRVATD KTVFGVPEVLIGFHPDAGASYYLSRLPGYLGEYLALTGDTLTGEEMFACGLATHYSLS TKLPVIETQLSTSARKDFSVVETFLARYSHPRSPNSSSVLHRMEMLNKCFGHGTVEEI IAALEVEAARSKDKWFISTMKKLRAAPPLSLKVSLRSIREGRFQTLEQCLAREYQMTL QAITRQISNDFSEVRNKT" mobile_element complement(30486544..30487149) /note="source:CACAO_M_S_E52697_F28_scaffold_5 7637 8214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30487447..30488215 /note="source:CACAO_PIF_E144_scaffold_10 1203 1944" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(30488217..30489294) /note="source:INTACT639F_F363_scaffold_5-int 7463 8573" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 30489289..30489350 /note="source:CACAO_PIF_E144_scaffold_10 1720 1781" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30489335..30489611 /note="source:CACAO_PIF_E144_scaffold_10 1628 1909" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30489610..30489827 /note="source:CACAO_PIF_E144_scaffold_10 2185 2391" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(30493131..30494767) /locus_tag="TCM_015946" /note="dbxref CacaoGD:Thecc1EG015946" mRNA complement(join(30493131..30493732,30493897..30494147, 30494542..30494767)) /locus_tag="TCM_015946" /product="Tonoplast intrinsic protein 2,3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028837t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400021050" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3725t1" CDS complement(join(30493358..30493732,30493897..30494147, 30494542..30494668)) /locus_tag="TCM_015946" /note="paralog of Thecc1EG028837t1" /codon_start=1 /product="Tonoplast intrinsic protein 2,3" /protein_id="EOY24305.1" /db_xref="Phytozome:PGSC0003DMP400021050" /db_xref="TAIR:AT5G47450.1" /translation="MVKLAFGSFGDSLSVGSFKAYLAEFIATLLFVFAGVGSAIAYGK LTSDAALDPPGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTFGLAVGGNITILTGI FYWIAQCLGSIVACLLLLFVTNGLSIPTHGVASGMNALEGVVMEIVITFTLVYTVYAT AADPKKGSLGIIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFSDNWIYW VGPLIGGGLAGLIYGDIFIGSYSPAPDSEDYA" mobile_element complement(30495237..30495296) /note="source:CACAO_M_E85113_F12_scaffold_10 11798 11858" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30497630..30504779 /locus_tag="TCM_015947" /note="dbxref CacaoGD:Thecc1EG015947" mRNA join(30497630..30498346,30499318..30499393, 30499622..30499732,30500208..30500324,30500573..30500920, 30501452..30501774,30502123..30502222,30502344..30502403, 30503012..30503098,30503295..30503460,30504162..30504779) /locus_tag="TCM_015947" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g41680.1" /inference="similar to AA sequence:ricco:30101.m000371" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b015411t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2029t8_C2" mRNA join(30497630..30498346,30499318..30499393, 30499622..30499732,30500208..30500324,30500573..30500920, 30501452..30501774,30502123..30502222,30502344..30502403, 30503012..30503098,30503295..30503435,30504162..30504683) /locus_tag="TCM_015947" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g41680.1" /inference="similar to AA sequence:ricco:30101.m000371" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2029t8_C2" mobile_element 30497643..30497711 /note="source:scaffold_5_CACTA_0596 1744 1812" /mobile_element_type="transposon:TIR/CACTA" mRNA join(30497953..30498346,30499318..30499393, 30499622..30499732,30500208..30500324,30500573..30500920, 30501452..30501774,30502123..30502222,30502344..30502882) /locus_tag="TCM_015947" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g41680.1" /inference="similar to AA sequence:ricco:30101.m000371" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc653t6; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2029t8_C2" CDS join(30498216..30498346,30499318..30499393, 30499622..30499732,30500208..30500324,30500573..30500920, 30501452..30501774,30502123..30502222,30502344..30502403, 30503012..30503098,30503295..30503435,30504162..30504491) /locus_tag="TCM_015947" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30101.m000371" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24306.1" /db_xref="TAIR:AT5G47380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I1M0" /translation="MTGKMDGFGLDQEAAAAAGGAKKVTEDTSWSHPHVQSQHRRSKS ASDKNLDASRGGVLHSIKKEHNELHASPLSTRTYRTRSPFHDRSAYSNKNTSLNQRAS LEKDIELLQLRLQQEKSMRITLERAMGRASSTLSPGHRHFAAQTKELIAEIELLEEEV ANREQHVLSLYRSIFDHCVSRPPSEQSSGKASPAHTKHTSRKHPSIISSAFCSSKKFP LRPLQALVSTNDSGKRTSRSVDALQFCGKDDTLFDKTCSHPVKAHEKVQSMEKTSVLR SLKDHLYQCPSKLSEEMVRCMAAVYCWLRSATSMNSEKNRSPLLSRSSTNVVLPRRGV GEDQDFSCTSNVEISWISTDKSQFSRASYAISNYRALVEQLEKVTVSQMEYNSQIAFW INVYNALVMHAYLAYGIPHSSLRRLALFHKAAYNIGGHIISANAIEQSIFCFRTPRVG RWLETILSAALRKKSGEERQFISSKFGLPHSQPLACFALCTGAFSDPVLKVYTASNVK EELEVAKREFLQANVVVKKSKKVFLPRVLERFAKEASISSDDLLNWVTENVDKKLHNS IQKCMDGKSKKKPSQVIDWLPYSSRFRYILSKDLTEKPWWV" CDS join(30498216..30498346,30499318..30499393, 30499622..30499732,30500208..30500324,30500573..30500920, 30501452..30501774,30502123..30502222,30502344..30502403, 30503012..30503098,30503295..30503456) /locus_tag="TCM_015947" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30101.m000371" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24307.1" /db_xref="TAIR:AT5G47380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I1M0" /translation="MTGKMDGFGLDQEAAAAAGGAKKVTEDTSWSHPHVQSQHRRSKS ASDKNLDASRGGVLHSIKKEHNELHASPLSTRTYRTRSPFHDRSAYSNKNTSLNQRAS LEKDIELLQLRLQQEKSMRITLERAMGRASSTLSPGHRHFAAQTKELIAEIELLEEEV ANREQHVLSLYRSIFDHCVSRPPSEQSSGKASPAHTKHTSRKHPSIISSAFCSSKKFP LRPLQALVSTNDSGKRTSRSVDALQFCGKDDTLFDKTCSHPVKAHEKVQSMEKTSVLR SLKDHLYQCPSKLSEEMVRCMAAVYCWLRSATSMNSEKNRSPLLSRSSTNVVLPRRGV GEDQDFSCTSNVEISWISTDKSQFSRASYAISNYRALVEQLEKVTVSQMEYNSQIAFW INVYNALVMHAYLAYGIPHSSLRRLALFHKAAYNIGGHIISANAIEQSIFCFRTPRVG RWLETILSAALRKKSGEERQFISSKFGLPHSQPLACFALCTGAFSDPVVTSTSL" CDS join(30498216..30498346,30499318..30499393, 30499622..30499732,30500208..30500324,30500573..30500920, 30501452..30501774,30502123..30502222,30502344..30502424) /locus_tag="TCM_015947" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30101.m000371" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY24308.1" /db_xref="TAIR:AT5G47380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I1M0" /translation="MTGKMDGFGLDQEAAAAAGGAKKVTEDTSWSHPHVQSQHRRSKS ASDKNLDASRGGVLHSIKKEHNELHASPLSTRTYRTRSPFHDRSAYSNKNTSLNQRAS LEKDIELLQLRLQQEKSMRITLERAMGRASSTLSPGHRHFAAQTKELIAEIELLEEEV ANREQHVLSLYRSIFDHCVSRPPSEQSSGKASPAHTKHTSRKHPSIISSAFCSSKKFP LRPLQALVSTNDSGKRTSRSVDALQFCGKDDTLFDKTCSHPVKAHEKVQSMEKTSVLR SLKDHLYQCPSKLSEEMVRCMAAVYCWLRSATSMNSEKNRSPLLSRSSTNVVLPRRGV GEDQDFSCTSNVEISWISTDKSQFSRASYAISNYRALVEQLEKVTVSQMEYNSQIAFW INVYNALVMHAYLAYGIPHSSLRRLALFHKVVLLLI" mobile_element 30505473..30506011 /note="source:CACAO_on_E446_scaffold_2 955 1535" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(30506118..30507612) /note="source:CACAO_on_E59_A_scaffold_8 1589 3064" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30507187..30508812 /note="source:CACAO_PIF_E38_scaffold_2 1487 3151" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(30509915..30510321) /note="source:scaffold_5_CACTA_0614 1 447" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30511017..30512107 /note="source:CACAO_on_E745_scaffold_10 8 1130" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 30513638..30527868 /locus_tag="TCM_015949" /note="dbxref CacaoGD:Thecc1EG015949" mRNA join(30513638..30514084,30515555..30517221, 30517333..30517698,30518078..30518224,30518591..30518982, 30519195..30519516,30519601..30519673,30519885..30519937, 30520014..30520121,30520200..30521986,30522313..30522421, 30522822..30523002,30523542..30523609,30523728..30523843, 30523932..30524813,30525555..30525648,30525762..30527868) /locus_tag="TCM_015949" /product="G2484-1 protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30101.m000370" /inference="similar to AA sequence:ricco:30101.m000370" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b015413t1a6; alternateUTRof:Thecc1EG015949t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9924t2" mRNA join(30513638..30513796,30513989..30514084, 30515555..30517221,30517333..30517698,30518078..30518224, 30518591..30518982,30519195..30519516,30519601..30519673, 30519885..30519937,30520014..30520121,30520200..30521986, 30522313..30522421,30522822..30523002,30523542..30523609, 30523728..30523843,30523932..30524813,30525555..30525648, 30525762..30527868) /locus_tag="TCM_015949" /product="G2484-1 protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30101.m000370" /inference="similar to AA sequence:ricco:30101.m000370" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b015413t1a5; alternateUTRof:Thecc1EG015949t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9924t2" mRNA join(30513638..30513796,30513989..30514057, 30515555..30517221,30517333..30517698,30518078..30518224, 30518591..30518982,30519195..30519673,30519885..30519937, 30520014..30520121,30520200..30521986,30522313..30522421, 30522822..30523002,30523542..30523609,30523728..30523843, 30523932..30524813,30525555..30525648,30525762..30527868) /locus_tag="TCM_015949" /product="G2484-1 protein, putative isoform 5" /inference="similar to AA sequence:ricco:30101.m000370" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b015413t1a3" mRNA join(30513638..30513796,30513989..30514057, 30515555..30517221,30517333..30517698,30518078..30518224, 30518591..30518982,30519195..30519673,30519885..30519937, 30520014..30520121,30520239..30521986,30522313..30522421, 30522822..30523002,30523542..30523609,30523728..30523843, 30523932..30524813,30525555..30525648,30525762..30527868) /locus_tag="TCM_015949" /product="G2484-1 protein, putative isoform 6" /inference="alignment:exonerate- protein:2:ricco:30101.m000370" /inference="similar to AA sequence:ricco:30101.m000370" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b015413t1a4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9924t2" mRNA join(30513638..30513796,30513989..30514057, 30515555..30517221,30517333..30517698,30518078..30518224, 30518591..30518982,30519195..30519516,30519601..30519673, 30519885..30519937,30520014..30520121,30520200..30521986, 30522313..30522421,30522822..30523002,30523542..30523609, 30523728..30523843,30523932..30524813,30525555..30525648, 30525762..30527868) /locus_tag="TCM_015949" /product="G2484-1 protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30101.m000370" /inference="similar to AA sequence:ricco:30101.m000370" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9924t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9924t2" mRNA join(30513638..30513796,30513989..30514057, 30515555..30517221,30517333..30517698,30518078..30518224, 30518591..30518982,30519195..30519516,30519601..30519673, 30519885..30519937,30520014..30520121,30520239..30521986, 30522313..30522421,30522822..30523002,30523542..30523609, 30523728..30523843,30523932..30524813,30525555..30525648, 30525762..30527868) /locus_tag="TCM_015949" /product="G2484-1 protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:30101.m000370" /inference="similar to AA sequence:ricco:30101.m000370" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b015413t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9924t2" CDS join(30515565..30517221,30517333..30517698, 30518078..30518224,30518591..30518982,30519195..30519673, 30519885..30519937,30520014..30520121,30520200..30521986, 30522313..30522421,30522822..30523002,30523542..30523609, 30523728..30523843,30523932..30524813,30525555..30525648, 30525762..30525778) /locus_tag="TCM_015949" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30101.m000370" /codon_start=1 /product="G2484-1 protein, putative isoform 5" /protein_id="EOY24313.1" /db_xref="TAIR:AT4G17330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CBI0" /translation="MDYDDNDFQSQNLHLAGEGNNKFPPVLRPYALPRFDFDDNLHGH LRFDSLVETEVFLGIESSEDNQWIEDFSRGSTGIVFSSSAAEPCSISRRNNVWSEAAS SESVEMLLKSVGQDETIPGQIISKDSDACDELGCIIKQMEPSLKHGDSGLSKEGDGLR PALQAGEIPGKFSGLKGNVGGDHPLVEDVSQMHEGEPTVDGAFKDPNTISRNTDLPVT ERDKSKDCEQIVVNENQVDALVDQSVDNRGQEDKFASDSQVDTLIPSLQNTCTSSALI DSQDTTHLKNDIIDETVDSLERVDSKQEVHIDGGNLDMQSKDGVHVIRNSTASVGEPC DRIVKGNSDHHMVEACSEGLGVEVPLQTGKSEDIVLSGGKLHDISPMPFVGDMTLKEH ESQVSNTDSKTCTSLESKMDSMMQLTCDAIEKKDLLETDCHPDTKILSSKSEKSSSSV EDGKGSKGEGEHLHNTLGVETMRVCEEYIVTEHNDDYKCDESASAAAKQNTKLPSDYD NADCGDGGSPLVEKGVDSSSFSTCSTENELVSNIQSDVAASSKSVDSVLLPSGKGLLT GTVFNQKEVQVSSSEASFSIMKTNSGLTTEKGALCETGEQFSCKKVDQSLAMDASNAE GQSGDLTLHRVTLEGGKDMQPSSVVSDSVVRETDGAEAQVISKWGSSEAAGAVSIQQN DKTPTNPVPSTSKEPSHDPDQNRSEDSDPKLVSEEKMHHVDGDPAKTHSSSFTSVISS ESQTKFHMIESGSSSVDLDNPSCGSPIVIRTSEQSQSKIEGVKRSADQSASASGVING EASKEQSISQDTKGNDASPGDRSFTFKVPPLADMSEKEAGKNWQPFSTMQHDKLSSVV EGTPSTSGSSKVAAKTAQDASHANPQASEREKVRVGSRGTSERKTRRTGGKNTGKDAA KKGIAAKETTPARQSERSDRSSNASLSSAGIGQLIQSNEMQHYGHIEGGNMKPFGLFS SSVSSLPDLNTSASSSAVFHQPFTDLQQVQLRAQIFVYGALIQGTAPDEAYMISAFGG PDGGRSIWENAWRACIERVHGQKSHLVSPETPLQSRIGAKPSDQAIKLNAVQGKVTSS PASRSTSKGTPTTIVNPMIPLSSPLWSIPTPSGDPLQPSGIPRGAVMDYQQALSPLHP PPMRNFVGPNASWMSQSPFRGPWVPQTSAFDGNARFPVLPITETANLTPVREASVPSS GMKPVSPVPMVQSGSPANVFAGTPLLDSKKTTVTAGQHSADPKPRKRKKSTASEDPGQ IMLHSQKESLLATAATGHASTPAAVSTPATIVSKSSTDKFITSVSADHLKKGDQDLDQ RATISEETLSKLKESQKQAEDAAAFAAAAVSHNQEIWNKLNRHQNSGLAPDVETKLTS AAVAIAAAAAVAKAAAAAANVASNAALQAKLMADEALVSSGYRNSIPTDAISSSDSVK KLGNATPASILRGEDATISSNSVIVAAREAARRRVEAASAASKRAENMDAIVKAAELA AEAVSQAGKIVAMGEPFSLTELVKAGPEAYWKVPQVSPEPDGAREHRGKSGSVEAPGS SAWHLKEVPLDQREKQSANHGMSPTLREIARESLEDRSRLTGGILGSPSAASGKDKKG QKGRKASDIAKTKGVTSESEIGFGSPSMTTPTEHEKPGEVSKDNYLREGSHVEVLRDG GGLKIAWFLADILNLKDGKAYVCYNELRSEEDGDRLKEWVELEGEGDRAPRIRTARPI TAMPFEGTRKRRRAAMGDYNWSVGDRVDTWMQDSWWEGVVTEKGKKDETSFTIHFPAR GETSVVKAWLLRPSLMWKNGSWVEWSSSGDNNVSSHEGDTPQEKRLRVGSPTVEAKGK DKLSKGVDIKESGKPDDTRLLDFSASERIFNIGKSTRDESKPDSLRMIRTGLQKEGSR VIFGVPKPGKKRKFMEVSKHYVADQSSKTHETSDSAKITKYLMPQRSGPRGTKNKIEL KEKRMAVSKPKVLKSGKPPSVSSRTIPQKDNLSNTMVSEPDDAVASDVSKFKDSVSHA ENISGKHNVMEFRSFSSSDGAAEGPVLFSSVALSSDAPSKKTSTSNAKFERINKGKLA AAAGKLGKIEEEKVFNDNSTKTISEVVEPRRSNRRIQPTSRLLEGLQSSLIISKIPSV SHDKSHKSQSRSTRGNNHG" CDS join(30515565..30517221,30517333..30517698, 30518078..30518224,30518591..30518982,30519195..30519673, 30519885..30519937,30520014..30520121,30520239..30521986, 30522313..30522421,30522822..30523002,30523542..30523609, 30523728..30523843,30523932..30524813,30525555..30525648, 30525762..30525778) /locus_tag="TCM_015949" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30101.m000370" /codon_start=1 /product="G2484-1 protein, putative isoform 6" /protein_id="EOY24314.1" /db_xref="TAIR:AT4G17330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CBI0" /translation="MDYDDNDFQSQNLHLAGEGNNKFPPVLRPYALPRFDFDDNLHGH LRFDSLVETEVFLGIESSEDNQWIEDFSRGSTGIVFSSSAAEPCSISRRNNVWSEAAS SESVEMLLKSVGQDETIPGQIISKDSDACDELGCIIKQMEPSLKHGDSGLSKEGDGLR PALQAGEIPGKFSGLKGNVGGDHPLVEDVSQMHEGEPTVDGAFKDPNTISRNTDLPVT ERDKSKDCEQIVVNENQVDALVDQSVDNRGQEDKFASDSQVDTLIPSLQNTCTSSALI DSQDTTHLKNDIIDETVDSLERVDSKQEVHIDGGNLDMQSKDGVHVIRNSTASVGEPC DRIVKGNSDHHMVEACSEGLGVEVPLQTGKSEDIVLSGGKLHDISPMPFVGDMTLKEH ESQVSNTDSKTCTSLESKMDSMMQLTCDAIEKKDLLETDCHPDTKILSSKSEKSSSSV EDGKGSKGEGEHLHNTLGVETMRVCEEYIVTEHNDDYKCDESASAAAKQNTKLPSDYD NADCGDGGSPLVEKGVDSSSFSTCSTENELVSNIQSDVAASSKSVDSVLLPSGKGLLT GTVFNQKEVQVSSSEASFSIMKTNSGLTTEKGALCETGEQFSCKKVDQSLAMDASNAE GQSGDLTLHRVTLEGGKDMQPSSVVSDSVVRETDGAEAQVISKWGSSEAAGAVSIQQN DKTPTNPVPSTSKEPSHDPDQNRSEDSDPKLVSEEKMHHVDGDPAKTHSSSFTSVISS ESQTKFHMIESGSSSVDLDNPSCGSPIVIRTSEQSQSKIEGVKRSADQSASASGVING EASKEQSISQDTKGNDASPGDRSFTFKVPPLADMSEKEAGKNWQPFSTMQHDKLSSVV EGTPSTSGSSKVAAKTAQDASHANPQASEREKVRVGSRGTSERKTRRTGGKNTGKDAA KKGIAAKETTPARQSERSDRSSNASLSSAGIGQLIQSNEMQHYGHIEGGNMKPFGLFS SSVSSLPDLNTSASSSAVFHQPFTDLQQVQLRAQIFVYGALIQGTAPDEAYMISAFGG PDGGRSIWENAWRACIERVHGQKSHLVSPETPLQSRIVQGKVTSSPASRSTSKGTPTT IVNPMIPLSSPLWSIPTPSGDPLQPSGIPRGAVMDYQQALSPLHPPPMRNFVGPNASW MSQSPFRGPWVPQTSAFDGNARFPVLPITETANLTPVREASVPSSGMKPVSPVPMVQS GSPANVFAGTPLLDSKKTTVTAGQHSADPKPRKRKKSTASEDPGQIMLHSQKESLLAT AATGHASTPAAVSTPATIVSKSSTDKFITSVSADHLKKGDQDLDQRATISEETLSKLK ESQKQAEDAAAFAAAAVSHNQEIWNKLNRHQNSGLAPDVETKLTSAAVAIAAAAAVAK AAAAAANVASNAALQAKLMADEALVSSGYRNSIPTDAISSSDSVKKLGNATPASILRG EDATISSNSVIVAAREAARRRVEAASAASKRAENMDAIVKAAELAAEAVSQAGKIVAM GEPFSLTELVKAGPEAYWKVPQVSPEPDGAREHRGKSGSVEAPGSSAWHLKEVPLDQR EKQSANHGMSPTLREIARESLEDRSRLTGGILGSPSAASGKDKKGQKGRKASDIAKTK GVTSESEIGFGSPSMTTPTEHEKPGEVSKDNYLREGSHVEVLRDGGGLKIAWFLADIL NLKDGKAYVCYNELRSEEDGDRLKEWVELEGEGDRAPRIRTARPITAMPFEGTRKRRR AAMGDYNWSVGDRVDTWMQDSWWEGVVTEKGKKDETSFTIHFPARGETSVVKAWLLRP SLMWKNGSWVEWSSSGDNNVSSHEGDTPQEKRLRVGSPTVEAKGKDKLSKGVDIKESG KPDDTRLLDFSASERIFNIGKSTRDESKPDSLRMIRTGLQKEGSRVIFGVPKPGKKRK FMEVSKHYVADQSSKTHETSDSAKITKYLMPQRSGPRGTKNKIELKEKRMAVSKPKVL KSGKPPSVSSRTIPQKDNLSNTMVSEPDDAVASDVSKFKDSVSHAENISGKHNVMEFR SFSSSDGAAEGPVLFSSVALSSDAPSKKTSTSNAKFERINKGKLAAAAGKLGKIEEEK VFNDNSTKTISEVVEPRRSNRRIQPTSRLLEGLQSSLIISKIPSVSHDKSHKSQSRST RGNNHG" CDS join(30515565..30517221,30517333..30517698, 30518078..30518224,30518591..30518982,30519195..30519516, 30519601..30519673,30519885..30519937,30520014..30520121, 30520200..30521986,30522313..30522421,30522822..30523002, 30523542..30523609,30523728..30523843,30523932..30524813, 30525555..30525648,30525762..30525778) /locus_tag="TCM_015949" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30101.m000370" /codon_start=1 /product="G2484-1 protein, putative isoform 1" /protein_id="EOY24309.1" /db_xref="TAIR:AT4G17330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CBI0" /translation="MDYDDNDFQSQNLHLAGEGNNKFPPVLRPYALPRFDFDDNLHGH LRFDSLVETEVFLGIESSEDNQWIEDFSRGSTGIVFSSSAAEPCSISRRNNVWSEAAS SESVEMLLKSVGQDETIPGQIISKDSDACDELGCIIKQMEPSLKHGDSGLSKEGDGLR PALQAGEIPGKFSGLKGNVGGDHPLVEDVSQMHEGEPTVDGAFKDPNTISRNTDLPVT ERDKSKDCEQIVVNENQVDALVDQSVDNRGQEDKFASDSQVDTLIPSLQNTCTSSALI DSQDTTHLKNDIIDETVDSLERVDSKQEVHIDGGNLDMQSKDGVHVIRNSTASVGEPC DRIVKGNSDHHMVEACSEGLGVEVPLQTGKSEDIVLSGGKLHDISPMPFVGDMTLKEH ESQVSNTDSKTCTSLESKMDSMMQLTCDAIEKKDLLETDCHPDTKILSSKSEKSSSSV EDGKGSKGEGEHLHNTLGVETMRVCEEYIVTEHNDDYKCDESASAAAKQNTKLPSDYD NADCGDGGSPLVEKGVDSSSFSTCSTENELVSNIQSDVAASSKSVDSVLLPSGKGLLT GTVFNQKEVQVSSSEASFSIMKTNSGLTTEKGALCETGEQFSCKKVDQSLAMDASNAE GQSGDLTLHRVTLEGGKDMQPSSVVSDSVVRETDGAEAQVISKWGSSEAAGAVSIQQN DKTPTNPVPSTSKEPSHDPDQNRSEDSDPKLVSEEKMHHVDGDPAKTHSSSFTSVISS ESQTKFHMIESGSSSVDLDNPSCGSPIVIRTSEQSQSKIEGVKRSADQSASASGVING EASKEQSISQDTKGNDASPGDRSFTFKVPPLADMSEKEAGKNWQPFSTMQHDKLSSVV EGTPSTSGSSKVAAKTAQDASHANPQASEREKVRVGSRGTSERKTRRTGGKNTGKDAA KKGIAAKETTPARQSERSDRSSNASLSSAGIGQLIQSNEMQHYGHIEVFHQPFTDLQQ VQLRAQIFVYGALIQGTAPDEAYMISAFGGPDGGRSIWENAWRACIERVHGQKSHLVS PETPLQSRIGAKPSDQAIKLNAVQGKVTSSPASRSTSKGTPTTIVNPMIPLSSPLWSI PTPSGDPLQPSGIPRGAVMDYQQALSPLHPPPMRNFVGPNASWMSQSPFRGPWVPQTS AFDGNARFPVLPITETANLTPVREASVPSSGMKPVSPVPMVQSGSPANVFAGTPLLDS KKTTVTAGQHSADPKPRKRKKSTASEDPGQIMLHSQKESLLATAATGHASTPAAVSTP ATIVSKSSTDKFITSVSADHLKKGDQDLDQRATISEETLSKLKESQKQAEDAAAFAAA AVSHNQEIWNKLNRHQNSGLAPDVETKLTSAAVAIAAAAAVAKAAAAAANVASNAALQ AKLMADEALVSSGYRNSIPTDAISSSDSVKKLGNATPASILRGEDATISSNSVIVAAR EAARRRVEAASAASKRAENMDAIVKAAELAAEAVSQAGKIVAMGEPFSLTELVKAGPE AYWKVPQVSPEPDGAREHRGKSGSVEAPGSSAWHLKEVPLDQREKQSANHGMSPTLRE IARESLEDRSRLTGGILGSPSAASGKDKKGQKGRKASDIAKTKGVTSESEIGFGSPSM TTPTEHEKPGEVSKDNYLREGSHVEVLRDGGGLKIAWFLADILNLKDGKAYVCYNELR SEEDGDRLKEWVELEGEGDRAPRIRTARPITAMPFEGTRKRRRAAMGDYNWSVGDRVD TWMQDSWWEGVVTEKGKKDETSFTIHFPARGETSVVKAWLLRPSLMWKNGSWVEWSSS GDNNVSSHEGDTPQEKRLRVGSPTVEAKGKDKLSKGVDIKESGKPDDTRLLDFSASER IFNIGKSTRDESKPDSLRMIRTGLQKEGSRVIFGVPKPGKKRKFMEVSKHYVADQSSK THETSDSAKITKYLMPQRSGPRGTKNKIELKEKRMAVSKPKVLKSGKPPSVSSRTIPQ KDNLSNTMVSEPDDAVASDVSKFKDSVSHAENISGKHNVMEFRSFSSSDGAAEGPVLF SSVALSSDAPSKKTSTSNAKFERINKGKLAAAAGKLGKIEEEKVFNDNSTKTISEVVE PRRSNRRIQPTSRLLEGLQSSLIISKIPSVSHDKSHKSQSRSTRGNNHG" CDS join(30515565..30517221,30517333..30517698, 30518078..30518224,30518591..30518982,30519195..30519516, 30519601..30519673,30519885..30519937,30520014..30520121, 30520200..30521986,30522313..30522421,30522822..30523002, 30523542..30523609,30523728..30523843,30523932..30524813, 30525555..30525648,30525762..30525778) /locus_tag="TCM_015949" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30101.m000370" /codon_start=1 /product="G2484-1 protein, putative isoform 1" /protein_id="EOY24310.1" /db_xref="TAIR:AT4G17330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CBI0" /translation="MDYDDNDFQSQNLHLAGEGNNKFPPVLRPYALPRFDFDDNLHGH LRFDSLVETEVFLGIESSEDNQWIEDFSRGSTGIVFSSSAAEPCSISRRNNVWSEAAS SESVEMLLKSVGQDETIPGQIISKDSDACDELGCIIKQMEPSLKHGDSGLSKEGDGLR PALQAGEIPGKFSGLKGNVGGDHPLVEDVSQMHEGEPTVDGAFKDPNTISRNTDLPVT ERDKSKDCEQIVVNENQVDALVDQSVDNRGQEDKFASDSQVDTLIPSLQNTCTSSALI DSQDTTHLKNDIIDETVDSLERVDSKQEVHIDGGNLDMQSKDGVHVIRNSTASVGEPC DRIVKGNSDHHMVEACSEGLGVEVPLQTGKSEDIVLSGGKLHDISPMPFVGDMTLKEH ESQVSNTDSKTCTSLESKMDSMMQLTCDAIEKKDLLETDCHPDTKILSSKSEKSSSSV EDGKGSKGEGEHLHNTLGVETMRVCEEYIVTEHNDDYKCDESASAAAKQNTKLPSDYD NADCGDGGSPLVEKGVDSSSFSTCSTENELVSNIQSDVAASSKSVDSVLLPSGKGLLT GTVFNQKEVQVSSSEASFSIMKTNSGLTTEKGALCETGEQFSCKKVDQSLAMDASNAE GQSGDLTLHRVTLEGGKDMQPSSVVSDSVVRETDGAEAQVISKWGSSEAAGAVSIQQN DKTPTNPVPSTSKEPSHDPDQNRSEDSDPKLVSEEKMHHVDGDPAKTHSSSFTSVISS ESQTKFHMIESGSSSVDLDNPSCGSPIVIRTSEQSQSKIEGVKRSADQSASASGVING EASKEQSISQDTKGNDASPGDRSFTFKVPPLADMSEKEAGKNWQPFSTMQHDKLSSVV EGTPSTSGSSKVAAKTAQDASHANPQASEREKVRVGSRGTSERKTRRTGGKNTGKDAA KKGIAAKETTPARQSERSDRSSNASLSSAGIGQLIQSNEMQHYGHIEVFHQPFTDLQQ VQLRAQIFVYGALIQGTAPDEAYMISAFGGPDGGRSIWENAWRACIERVHGQKSHLVS PETPLQSRIGAKPSDQAIKLNAVQGKVTSSPASRSTSKGTPTTIVNPMIPLSSPLWSI PTPSGDPLQPSGIPRGAVMDYQQALSPLHPPPMRNFVGPNASWMSQSPFRGPWVPQTS AFDGNARFPVLPITETANLTPVREASVPSSGMKPVSPVPMVQSGSPANVFAGTPLLDS KKTTVTAGQHSADPKPRKRKKSTASEDPGQIMLHSQKESLLATAATGHASTPAAVSTP ATIVSKSSTDKFITSVSADHLKKGDQDLDQRATISEETLSKLKESQKQAEDAAAFAAA AVSHNQEIWNKLNRHQNSGLAPDVETKLTSAAVAIAAAAAVAKAAAAAANVASNAALQ AKLMADEALVSSGYRNSIPTDAISSSDSVKKLGNATPASILRGEDATISSNSVIVAAR EAARRRVEAASAASKRAENMDAIVKAAELAAEAVSQAGKIVAMGEPFSLTELVKAGPE AYWKVPQVSPEPDGAREHRGKSGSVEAPGSSAWHLKEVPLDQREKQSANHGMSPTLRE IARESLEDRSRLTGGILGSPSAASGKDKKGQKGRKASDIAKTKGVTSESEIGFGSPSM TTPTEHEKPGEVSKDNYLREGSHVEVLRDGGGLKIAWFLADILNLKDGKAYVCYNELR SEEDGDRLKEWVELEGEGDRAPRIRTARPITAMPFEGTRKRRRAAMGDYNWSVGDRVD TWMQDSWWEGVVTEKGKKDETSFTIHFPARGETSVVKAWLLRPSLMWKNGSWVEWSSS GDNNVSSHEGDTPQEKRLRVGSPTVEAKGKDKLSKGVDIKESGKPDDTRLLDFSASER IFNIGKSTRDESKPDSLRMIRTGLQKEGSRVIFGVPKPGKKRKFMEVSKHYVADQSSK THETSDSAKITKYLMPQRSGPRGTKNKIELKEKRMAVSKPKVLKSGKPPSVSSRTIPQ KDNLSNTMVSEPDDAVASDVSKFKDSVSHAENISGKHNVMEFRSFSSSDGAAEGPVLF SSVALSSDAPSKKTSTSNAKFERINKGKLAAAAGKLGKIEEEKVFNDNSTKTISEVVE PRRSNRRIQPTSRLLEGLQSSLIISKIPSVSHDKSHKSQSRSTRGNNHG" CDS join(30515565..30517221,30517333..30517698, 30518078..30518224,30518591..30518982,30519195..30519516, 30519601..30519673,30519885..30519937,30520014..30520121, 30520200..30521986,30522313..30522421,30522822..30523002, 30523542..30523609,30523728..30523843,30523932..30524813, 30525555..30525648,30525762..30525778) /locus_tag="TCM_015949" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30101.m000370" /codon_start=1 /product="G2484-1 protein, putative isoform 1" /protein_id="EOY24311.1" /db_xref="TAIR:AT4G17330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CBI0" /translation="MDYDDNDFQSQNLHLAGEGNNKFPPVLRPYALPRFDFDDNLHGH LRFDSLVETEVFLGIESSEDNQWIEDFSRGSTGIVFSSSAAEPCSISRRNNVWSEAAS SESVEMLLKSVGQDETIPGQIISKDSDACDELGCIIKQMEPSLKHGDSGLSKEGDGLR PALQAGEIPGKFSGLKGNVGGDHPLVEDVSQMHEGEPTVDGAFKDPNTISRNTDLPVT ERDKSKDCEQIVVNENQVDALVDQSVDNRGQEDKFASDSQVDTLIPSLQNTCTSSALI DSQDTTHLKNDIIDETVDSLERVDSKQEVHIDGGNLDMQSKDGVHVIRNSTASVGEPC DRIVKGNSDHHMVEACSEGLGVEVPLQTGKSEDIVLSGGKLHDISPMPFVGDMTLKEH ESQVSNTDSKTCTSLESKMDSMMQLTCDAIEKKDLLETDCHPDTKILSSKSEKSSSSV EDGKGSKGEGEHLHNTLGVETMRVCEEYIVTEHNDDYKCDESASAAAKQNTKLPSDYD NADCGDGGSPLVEKGVDSSSFSTCSTENELVSNIQSDVAASSKSVDSVLLPSGKGLLT GTVFNQKEVQVSSSEASFSIMKTNSGLTTEKGALCETGEQFSCKKVDQSLAMDASNAE GQSGDLTLHRVTLEGGKDMQPSSVVSDSVVRETDGAEAQVISKWGSSEAAGAVSIQQN DKTPTNPVPSTSKEPSHDPDQNRSEDSDPKLVSEEKMHHVDGDPAKTHSSSFTSVISS ESQTKFHMIESGSSSVDLDNPSCGSPIVIRTSEQSQSKIEGVKRSADQSASASGVING EASKEQSISQDTKGNDASPGDRSFTFKVPPLADMSEKEAGKNWQPFSTMQHDKLSSVV EGTPSTSGSSKVAAKTAQDASHANPQASEREKVRVGSRGTSERKTRRTGGKNTGKDAA KKGIAAKETTPARQSERSDRSSNASLSSAGIGQLIQSNEMQHYGHIEVFHQPFTDLQQ VQLRAQIFVYGALIQGTAPDEAYMISAFGGPDGGRSIWENAWRACIERVHGQKSHLVS PETPLQSRIGAKPSDQAIKLNAVQGKVTSSPASRSTSKGTPTTIVNPMIPLSSPLWSI PTPSGDPLQPSGIPRGAVMDYQQALSPLHPPPMRNFVGPNASWMSQSPFRGPWVPQTS AFDGNARFPVLPITETANLTPVREASVPSSGMKPVSPVPMVQSGSPANVFAGTPLLDS KKTTVTAGQHSADPKPRKRKKSTASEDPGQIMLHSQKESLLATAATGHASTPAAVSTP ATIVSKSSTDKFITSVSADHLKKGDQDLDQRATISEETLSKLKESQKQAEDAAAFAAA AVSHNQEIWNKLNRHQNSGLAPDVETKLTSAAVAIAAAAAVAKAAAAAANVASNAALQ AKLMADEALVSSGYRNSIPTDAISSSDSVKKLGNATPASILRGEDATISSNSVIVAAR EAARRRVEAASAASKRAENMDAIVKAAELAAEAVSQAGKIVAMGEPFSLTELVKAGPE AYWKVPQVSPEPDGAREHRGKSGSVEAPGSSAWHLKEVPLDQREKQSANHGMSPTLRE IARESLEDRSRLTGGILGSPSAASGKDKKGQKGRKASDIAKTKGVTSESEIGFGSPSM TTPTEHEKPGEVSKDNYLREGSHVEVLRDGGGLKIAWFLADILNLKDGKAYVCYNELR SEEDGDRLKEWVELEGEGDRAPRIRTARPITAMPFEGTRKRRRAAMGDYNWSVGDRVD TWMQDSWWEGVVTEKGKKDETSFTIHFPARGETSVVKAWLLRPSLMWKNGSWVEWSSS GDNNVSSHEGDTPQEKRLRVGSPTVEAKGKDKLSKGVDIKESGKPDDTRLLDFSASER IFNIGKSTRDESKPDSLRMIRTGLQKEGSRVIFGVPKPGKKRKFMEVSKHYVADQSSK THETSDSAKITKYLMPQRSGPRGTKNKIELKEKRMAVSKPKVLKSGKPPSVSSRTIPQ KDNLSNTMVSEPDDAVASDVSKFKDSVSHAENISGKHNVMEFRSFSSSDGAAEGPVLF SSVALSSDAPSKKTSTSNAKFERINKGKLAAAAGKLGKIEEEKVFNDNSTKTISEVVE PRRSNRRIQPTSRLLEGLQSSLIISKIPSVSHDKSHKSQSRSTRGNNHG" CDS join(30515565..30517221,30517333..30517698, 30518078..30518224,30518591..30518982,30519195..30519516, 30519601..30519673,30519885..30519937,30520014..30520121, 30520239..30521986,30522313..30522421,30522822..30523002, 30523542..30523609,30523728..30523843,30523932..30524813, 30525555..30525648,30525762..30525778) /locus_tag="TCM_015949" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30101.m000370" /codon_start=1 /product="G2484-1 protein, putative isoform 4" /protein_id="EOY24312.1" /db_xref="TAIR:AT4G17330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CBI0" /translation="MDYDDNDFQSQNLHLAGEGNNKFPPVLRPYALPRFDFDDNLHGH LRFDSLVETEVFLGIESSEDNQWIEDFSRGSTGIVFSSSAAEPCSISRRNNVWSEAAS SESVEMLLKSVGQDETIPGQIISKDSDACDELGCIIKQMEPSLKHGDSGLSKEGDGLR PALQAGEIPGKFSGLKGNVGGDHPLVEDVSQMHEGEPTVDGAFKDPNTISRNTDLPVT ERDKSKDCEQIVVNENQVDALVDQSVDNRGQEDKFASDSQVDTLIPSLQNTCTSSALI DSQDTTHLKNDIIDETVDSLERVDSKQEVHIDGGNLDMQSKDGVHVIRNSTASVGEPC DRIVKGNSDHHMVEACSEGLGVEVPLQTGKSEDIVLSGGKLHDISPMPFVGDMTLKEH ESQVSNTDSKTCTSLESKMDSMMQLTCDAIEKKDLLETDCHPDTKILSSKSEKSSSSV EDGKGSKGEGEHLHNTLGVETMRVCEEYIVTEHNDDYKCDESASAAAKQNTKLPSDYD NADCGDGGSPLVEKGVDSSSFSTCSTENELVSNIQSDVAASSKSVDSVLLPSGKGLLT GTVFNQKEVQVSSSEASFSIMKTNSGLTTEKGALCETGEQFSCKKVDQSLAMDASNAE GQSGDLTLHRVTLEGGKDMQPSSVVSDSVVRETDGAEAQVISKWGSSEAAGAVSIQQN DKTPTNPVPSTSKEPSHDPDQNRSEDSDPKLVSEEKMHHVDGDPAKTHSSSFTSVISS ESQTKFHMIESGSSSVDLDNPSCGSPIVIRTSEQSQSKIEGVKRSADQSASASGVING EASKEQSISQDTKGNDASPGDRSFTFKVPPLADMSEKEAGKNWQPFSTMQHDKLSSVV EGTPSTSGSSKVAAKTAQDASHANPQASEREKVRVGSRGTSERKTRRTGGKNTGKDAA KKGIAAKETTPARQSERSDRSSNASLSSAGIGQLIQSNEMQHYGHIEVFHQPFTDLQQ VQLRAQIFVYGALIQGTAPDEAYMISAFGGPDGGRSIWENAWRACIERVHGQKSHLVS PETPLQSRIVQGKVTSSPASRSTSKGTPTTIVNPMIPLSSPLWSIPTPSGDPLQPSGI PRGAVMDYQQALSPLHPPPMRNFVGPNASWMSQSPFRGPWVPQTSAFDGNARFPVLPI TETANLTPVREASVPSSGMKPVSPVPMVQSGSPANVFAGTPLLDSKKTTVTAGQHSAD PKPRKRKKSTASEDPGQIMLHSQKESLLATAATGHASTPAAVSTPATIVSKSSTDKFI TSVSADHLKKGDQDLDQRATISEETLSKLKESQKQAEDAAAFAAAAVSHNQEIWNKLN RHQNSGLAPDVETKLTSAAVAIAAAAAVAKAAAAAANVASNAALQAKLMADEALVSSG YRNSIPTDAISSSDSVKKLGNATPASILRGEDATISSNSVIVAAREAARRRVEAASAA SKRAENMDAIVKAAELAAEAVSQAGKIVAMGEPFSLTELVKAGPEAYWKVPQVSPEPD GAREHRGKSGSVEAPGSSAWHLKEVPLDQREKQSANHGMSPTLREIARESLEDRSRLT GGILGSPSAASGKDKKGQKGRKASDIAKTKGVTSESEIGFGSPSMTTPTEHEKPGEVS KDNYLREGSHVEVLRDGGGLKIAWFLADILNLKDGKAYVCYNELRSEEDGDRLKEWVE LEGEGDRAPRIRTARPITAMPFEGTRKRRRAAMGDYNWSVGDRVDTWMQDSWWEGVVT EKGKKDETSFTIHFPARGETSVVKAWLLRPSLMWKNGSWVEWSSSGDNNVSSHEGDTP QEKRLRVGSPTVEAKGKDKLSKGVDIKESGKPDDTRLLDFSASERIFNIGKSTRDESK PDSLRMIRTGLQKEGSRVIFGVPKPGKKRKFMEVSKHYVADQSSKTHETSDSAKITKY LMPQRSGPRGTKNKIELKEKRMAVSKPKVLKSGKPPSVSSRTIPQKDNLSNTMVSEPD DAVASDVSKFKDSVSHAENISGKHNVMEFRSFSSSDGAAEGPVLFSSVALSSDAPSKK TSTSNAKFERINKGKLAAAAGKLGKIEEEKVFNDNSTKTISEVVEPRRSNRRIQPTSR LLEGLQSSLIISKIPSVSHDKSHKSQSRSTRGNNHG" gene complement(30526269..30531902) /locus_tag="TCM_015951" /note="dbxref CacaoGD:Thecc1EG015951" mRNA complement(join(30526269..30527056,30527540..30527868, 30528014..30528116,30528654..30528835,30529371..30529560, 30529684..30529772,30530053..30530129,30531030..30531108, 30531201..30531902)) /locus_tag="TCM_015951" /product="O-fucosyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT4G16650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034367t1" /inference="similar to AA sequence:Phytozome:GSVIVT01004715001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc93t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc93t2" mRNA complement(join(30526269..30527056,30527540..30527868, 30528014..30528116,30528654..30528835,30529371..30529560, 30529684..30529772,30530053..30530129,30531018..30531108, 30531201..30531902)) /locus_tag="TCM_015951" /product="O-fucosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G16650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034367t1" /inference="similar to AA sequence:Phytozome:GSVIVT01004715001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc93t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc93t2" CDS complement(join(30526729..30527056,30527540..30527868, 30528014..30528116,30528654..30528835,30529371..30529560, 30529684..30529772,30530053..30530129,30531030..30531108, 30531201..30531467)) /locus_tag="TCM_015951" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034367t1" /codon_start=1 /product="O-fucosyltransferase family protein isoform 2" /protein_id="EOY24316.1" /db_xref="Phytozome:GSVIVT01004715001" /db_xref="TAIR:AT4G16650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23508" /translation="MGVAKSWRFSVISANLALLQHPNGSLSNKHVCWRWRSSAAQQRK PISWSLVCGLMLFCLGMISLFTGHVASDLEWYSQRLVKRSLYFKLDGSNKGPIDIWKS QYAKYFYGCSKKSHAVRGRSSNGYLLIAASGGLNQQRTGISDAVVVARILNATLVVPE LDHNSYWKDGSDFVNIFDVNWFISYLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSP PEYYIDQVLPILSRRRVLQLTKFDYRLANNIDEELQKLRCRANFHALRFTKPIQELGQ KLVMRMRDMAKSFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSAD GERRRGKCPLTPHEVGLMLRALGFSNDTHLYVASGEIYGGEETLRPLRELFPNFYTKE MLANEELKPFLPFSSRLAAIDFIVSDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRP NAKRLSALFMERDQMDWDTFARKVKAAQRGFMGEPDEMRPGRGEFHEYPYSCICEKPL NDVVDSRSGDPQSEQVRGYQGLRKEEPVSLGYKDEDAAG" CDS complement(join(30526729..30527056,30527540..30527868, 30528014..30528116,30528654..30528835,30529371..30529560, 30529684..30529772,30530053..30530129,30531018..30531108, 30531201..30531467)) /locus_tag="TCM_015951" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG034367t1" /codon_start=1 /product="O-fucosyltransferase family protein isoform 1" /protein_id="EOY24315.1" /db_xref="Phytozome:GSVIVT01004715001" /db_xref="TAIR:AT4G16650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23508" /translation="MGVAKSWRFSVISANLALLQHPNGSLSNKHVCWRWRSSAAQQRK PISWSLVCGLMLFCLGMISLFTGHVASDLEWYSQRLVKRSLYFKLDGSNKGPIDIWKS QYAKYFYGCSKKSRNFPHAVRGRSSNGYLLIAASGGLNQQRTGISDAVVVARILNATL VVPELDHNSYWKDGSDFVNIFDVNWFISYLAKDVTIVKRVPDKVMRSMEKPPYTMRVP RKSPPEYYIDQVLPILSRRRVLQLTKFDYRLANNIDEELQKLRCRANFHALRFTKPIQ ELGQKLVMRMRDMAKSFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPD LSADGERRRGKCPLTPHEVGLMLRALGFSNDTHLYVASGEIYGGEETLRPLRELFPNF YTKEMLANEELKPFLPFSSRLAAIDFIVSDESDVFVTNNNGNMAKILAGRRRYMGHKR TIRPNAKRLSALFMERDQMDWDTFARKVKAAQRGFMGEPDEMRPGRGEFHEYPYSCIC EKPLNDVVDSRSGDPQSEQVRGYQGLRKEEPVSLGYKDEDAAG" mobile_element complement(30534766..30535973) /note="source:scaffold_10_CACTA_0130 8381 9615" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30535991..30536321) /note="source:scaffold_10_CACTA_0130 6252 6574" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30537491..30537756) /note="source:CACAO_Mariner_E220_scaffold_9 14978 15241" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(30538272..30538821) /note="source:CACAO_M_E49279_F74_scaffold_6 1007 1557" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30539099..30539179) /note="source:scaffold_1_CACTA_0008 1438 1530" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30539117..30539824) /note="source:INTACT687_F13_scaffold_3-int 1315 2021" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30539675..30539842) /note="source:CACAO_Mariner_E176_scaffold_6 3735 3892" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 30542227..30543834 /locus_tag="TCM_015953" /note="dbxref CacaoGD:Thecc1EG015953" mRNA 30542227..30543834 /locus_tag="TCM_015953" /product="Matrixin family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005619t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15760.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1975t1" CDS 30542260..30543339 /locus_tag="TCM_015953" /note="paralog of Thecc1EG005619t1" /codon_start=1 /product="Matrixin family protein" /protein_id="EOY24317.1" /db_xref="Phytozome:POPTR_0001s15760.1" /db_xref="TAIR:AT4G16640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUP8" /translation="MFPLFGYYSFLFFFLFLCFFPLPGFPARITPEQITVITTDTHNA TWHNFTRFKDAEKGSHISGMSELKKYFQRFGYLSIPDNQNGNFTDVFDTQFESAVMLY QQKLGLPVTGKLDSGTISAIMSPRCGVSDTAPRIHSTKHFAYFYGRPRWERGSPMTLT YAFSPSNMIDYISLSEIRTVFKRAFSRWASVIPVNFAEIEDYESANIKIGFFRGDHGD GEPFDGVLGVLAHAFSPENGRFHLDEAETWAVDFEKVRSKTAVDLESVATHEIGHVLG LAHSSVTEAVMYPSLRPRSRKADLKLDDVEGVQALYGSNPNFKFSSLLESENSSNKGN VLNCISSKWTFSLAVISFFLLLMIA" mobile_element 30544029..30544081 /note="source:scaffold_1_CACTA_0030 437 491" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30544160..30545291) /note="source:CACAO_PIF_E144_scaffold_10 1198 2381" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30546095..30546608 /note="source:CACAO_M_S_E122136_F76_scaffold_10 35 593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30547145..30547801) /note="source:INTACT459_F220_scaffold_4-int 6899 7542" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30547805..30550320) /note="source:CACAO_M_S_E119572_F76_scaffold_9 1079 3599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30550340..30550397) /note="source:INTACT459_F220_scaffold_4-int 1 58" /mobile_element_type="retrotransposon:LTR/Copia" gene 30550492..30553722 /locus_tag="TCM_015954" /note="dbxref CacaoGD:Thecc1EG015954" mRNA join(30550492..30550882,30551029..30551204, 30552983..30553241,30553346..30553722) /locus_tag="TCM_015954" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006992001" /inference="similar to AA sequence:Phytozome:GSVIVT01006992001" /note="transcript variant 1; alternatively spliced; quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc564t9" mRNA join(30550572..30550882,30551029..30551147, 30552291..30552361,30552983..30553197) /locus_tag="TCM_015954" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006992001" /inference="similar to AA sequence:Phytozome:GSVIVT01006992001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9685t2; alternateUTRof:Thecc1EG015954t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc564t9; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9837t1" mRNA join(30550572..30550882,30551029..30551147, 30552983..30553194) /locus_tag="TCM_015954" /product="Uncharacterized protein isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006992001" /inference="similar to AA sequence:Phytozome:GSVIVT01006992001" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9685t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc564t9; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9837t1" mRNA join(30550580..30550882,30551029..30551147, 30552291..30552361,30553346..30553592) /locus_tag="TCM_015954" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006992001" /inference="similar to AA sequence:Phytozome:GSVIVT01006992001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00441t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc564t9; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9837t1" mRNA join(<30550637..30550882,30551029..30551204, 30552291..30552361,30553346..30553578) /locus_tag="TCM_015954" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006992001" /inference="similar to AA sequence:Phytozome:GSVIVT01006992001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00097t00001; inference alignment:Newbler:10:TSA:cgbaB_g00097t00003; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc564t9" mRNA join(<30550637..30550882,30551029..30551204, 30552291..30552361,30552983..30553197) /locus_tag="TCM_015954" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006992001" /inference="similar to AA sequence:Phytozome:GSVIVT01006992001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00097t00002; alternateUTRof:Thecc1EG015954t2; inference alignment:Newbler:10:TSA:cgbaB_g00097t00003; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc564t9" CDS join(<30550638..30550882,30551029..30551179) /locus_tag="TCM_015954" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24319.1" /db_xref="Phytozome:GSVIVT01006992001" /db_xref="TAIR:AT4G17310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949V8" /translation="HFPSLQFLLTSFSILYLRQEIFFLMASTCNRFISRSSSSIKSAF RSNGPRSLLSRSAASPSSARSPLPSQSIPPLRRFSLSRCPSELGCAQSLLPLHSAVAA SRMTSCLSTTSRSCRALSQGTLCCTYPGL" CDS join(<30550638..30550882,30551029..30551179) /locus_tag="TCM_015954" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24320.1" /db_xref="Phytozome:GSVIVT01006992001" /db_xref="TAIR:AT4G17310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949V8" /translation="HFPSLQFLLTSFSILYLRQEIFFLMASTCNRFISRSSSSIKSAF RSNGPRSLLSRSAASPSSARSPLPSQSIPPLRRFSLSRCPSELGCAQSLLPLHSAVAA SRMTSCLSTTSRSCRALSQGTLCCTYPGL" mRNA join(30550676..30550882,30551029..30551204, 30553346..30553643) /locus_tag="TCM_015954" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006992001" /inference="similar to AA sequence:Phytozome:GSVIVT01006992001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00284t00002; alternateUTRof:Thecc1EG015954t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc564t9; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9837t1" mRNA join(30550678..30550882,30551029..30551147, 30553346..30553643) /locus_tag="TCM_015954" /product="Uncharacterized protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006992001" /inference="similar to AA sequence:Phytozome:GSVIVT01006992001" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00284t00003; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9837t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc564t9" CDS join(30550710..30550882,30551029..30551147, 30553346..30553371) /locus_tag="TCM_015954" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 7" /protein_id="EOY24324.1" /db_xref="Phytozome:GSVIVT01006992001" /db_xref="TAIR:AT4G17310.2" /translation="MASTCNRFISRSSSSIKSAFRSNGPRSLLSRSAASPSSARSPLP SQSIPPLRRFSLSRCPSELGCAQSLLPLHSAVAASRMTSCLSTTSRSCRALSQEFGLA VPR" CDS join(30550710..30550882,30551029..30551147, 30552983..30553002) /locus_tag="TCM_015954" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 8" /protein_id="EOY24325.1" /db_xref="Phytozome:GSVIVT01006992001" /translation="MASTCNRFISRSSSSIKSAFRSNGPRSLLSRSAASPSSARSPLP SQSIPPLRRFSLSRCPSELGCAQSLLPLHSAVAASRMTSCLSTTSRSCRALSQDRIDG T" CDS join(30550710..30550882,30551029..30551147, 30552291..30552298) /locus_tag="TCM_015954" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY24321.1" /db_xref="Phytozome:GSVIVT01006992001" /translation="MASTCNRFISRSSSSIKSAFRSNGPRSLLSRSAASPSSARSPLP SQSIPPLRRFSLSRCPSELGCAQSLLPLHSAVAASRMTSCLSTTSRSCRALSQGT" CDS join(30550710..30550882,30551029..30551147, 30552291..30552298) /locus_tag="TCM_015954" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY24323.1" /db_xref="Phytozome:GSVIVT01006992001" /translation="MASTCNRFISRSSSSIKSAFRSNGPRSLLSRSAASPSSARSPLP SQSIPPLRRFSLSRCPSELGCAQSLLPLHSAVAASRMTSCLSTTSRSCRALSQGT" CDS join(30550710..30550882,30551029..30551179) /locus_tag="TCM_015954" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24318.1" /db_xref="Phytozome:GSVIVT01006992001" /db_xref="TAIR:AT4G17310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949V8" /translation="MASTCNRFISRSSSSIKSAFRSNGPRSLLSRSAASPSSARSPLP SQSIPPLRRFSLSRCPSELGCAQSLLPLHSAVAASRMTSCLSTTSRSCRALSQGTLCC TYPGL" CDS join(30550710..30550882,30551029..30551179) /locus_tag="TCM_015954" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24322.1" /db_xref="Phytozome:GSVIVT01006992001" /db_xref="TAIR:AT4G17310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949V8" /translation="MASTCNRFISRSSSSIKSAFRSNGPRSLLSRSAASPSSARSPLP SQSIPPLRRFSLSRCPSELGCAQSLLPLHSAVAASRMTSCLSTTSRSCRALSQGTLCC TYPGL" gene 30554087..30556094 /locus_tag="TCM_015956" /note="dbxref CacaoGD:Thecc1EG015956" mRNA join(30554087..30554716,30554829..30554949, 30555026..30555213,30555322..30555395,30555486..30555635, 30555752..30556094) /locus_tag="TCM_015956" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene31429" /inference="similar to AA sequence:frave:gene31429" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9659t1" CDS join(30554305..30554716,30554829..30554949, 30555026..30555213,30555322..30555395,30555486..30555635, 30555752..30555889) /locus_tag="TCM_015956" /note="dbxref frave:gene31429" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24326.1" /translation="MEDPNSSVPNNNPNDMYPDGIFNFLDFENLVEDLTTQDISVLST FSIHDPSSEEIANDTIDPLDDPVIRDFYNERNAGTSQAGFFGLSGVMNNPTEKNMGTE SLNFENSMPLSVWPIEPVPFGCSCCQVLREIVHTNGINVTKLEIHGRLGIICHAILTD RSGSTNAVAPDHQYQMFDFCKKSIQYVKQFLSQYCFHRSQTGYVIVQDPLSGFYEALC VGFLWDENFNNGDFMQPSSSHAGGFRMDQAGNSNNQGKHPKPSLSIQRERTRNLTLKD IEKYFHLPIEEAARRLDLSVTVLKKICRKYGVLRWPHRKIQSMEKQIVFWTGKLNSND PEERDRAAKIILKLQRGIAKIREGAR" gene complement(30555978..30560128) /locus_tag="TCM_015957" /note="dbxref CacaoGD:Thecc1EG015957" mRNA complement(join(30555978..30558491,30560001..30560128)) /locus_tag="TCM_015957" /product="Pentatricopeptide repeat superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004712001" /inference="similar to AA sequence:Phytozome:GSVIVT01004712001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage" CDS complement(30556557..30558371) /locus_tag="TCM_015957" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative" /protein_id="EOY24327.1" /db_xref="Phytozome:GSVIVT01004712001" /db_xref="TAIR:AT5G47460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T8P8" /translation="MQRSLLRRVQNYQPKQWHSYNLQSNHLIGTNLPSQNNNASNNVP KQNFETWLTLISTLAEGGADMDLTLHKAAKLLRSGIKPYDYSLVHLVRVSTDLDYDSY CQQLHCYILKSGFVSNVFVSNALMRFYRRIDLPCQAGKLFVEIPQPSVISWNTLISGY VQFGQFRKALGLFLKLQRSDICSNEYSFTVALAACGQLGFLHLGKSIHSNILKFGLEC GIIVRNCLIDTYGKCGAVDDAVLVFHSMIDKDVISWNSVLAACARNGKLEEAFSFWRQ MPLRDTISYNELISGIAQFGNINDAIDILFNMPNPNSSSWTSIMTGYVNRNRAREALQ FFSKMHSNEVELDEFSFSIILSGIAGLSALTWGMLIHCCTIKCGLDTSVVVGSALIDM YSKCGRVKNTESMFQSLPKKNLVTWNAMISGYAHNGDSTKVIQLFELLKRERDLKPDA ITFLNVLAACSHSGTPLQEVYQYFESMINDYGIKPTVEHCCSMIRLMGQGGEIWRAER MIYDLEFGSCDVVWRALLGACGVCKDLKVAKIAAAKVIELDGSNDYAYVMMSNIFAHF HKWAEMSVMRKLMRDKRVIKEAGCSWIEMENVELNSST" gene 30558937..30559961 /locus_tag="TCM_015958" /note="dbxref CacaoGD:Thecc1EG015958" mRNA 30558937..30559961 /locus_tag="TCM_015958" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage" CDS 30559350..30559637 /locus_tag="TCM_015958" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24328.1" /translation="MNGINLSLEEYNQRSYVFLGRQGHMVASLRDRLGLLRVIDMERL LISRQSHPTGGCVTPYMWQPTFKFQTSNILPHFYQCSIHVYFTCSSVLCIP" gene 30560017..30563613 /locus_tag="TCM_015959" /note="dbxref CacaoGD:Thecc1EG015959" mRNA join(30560017..30560570,30560678..30560743, 30561340..30561456,30561564..30561795,30561887..30562048, 30562525..30562676,30562759..30562850,30563150..30563613) /locus_tag="TCM_015959" /product="Mtn21-like protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15780.1" /inference="similar to AA sequence:frave:gene08921" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1228t2" CDS join(30560371..30560570,30560678..30560743, 30561340..30561456,30561564..30561795,30561887..30562048, 30562525..30562676,30562759..30562850,30563150..30563157) /locus_tag="TCM_015959" /note="dbxref frave:gene08921" /codon_start=1 /product="Mtn21-like protein" /protein_id="EOY24329.1" /db_xref="TAIR:AT5G47470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUP6" /translation="MVVYIKRDILEDVAIIGGLVGVQFVYAGNSLLLGYLMSLGLSPF TIIIFFTLSTFIILTPFAVYFERSKWPKQLTLKFITQLVLISFGGVTLFQCLFLKGIN LTSPAMATAMPNLAPGLIFIIAWTCRLEKVALSCLYGKVKIVGTLMCVVGALTMSLMQ SAVSSKDARIIAPPTDDVVFDKNKIIGCMYLMAAVLVLSSNVVLQATTLGDFPAPMSL CAITSLIGVIITAMVQLVEDHQLKLGWPLVSVKDLIAFSLLGGTVGGACVSFNGWAMR KRGPVLVSMFSPIGTVISVILSFVTLGETISLGSLPGMFLMFTGLYFVLWAKGKEVFS DGNGLEKA" gene 30568653..30570621 /locus_tag="TCM_015960" /note="dbxref CacaoGD:Thecc1EG015960" mRNA 30568653..30570621 /locus_tag="TCM_015960" /product="C2H2-like zinc finger protein, putative" /inference="alignment:exonerate-protein:2:frave:gene08922" /inference="similar to AA sequence:Phytozome:POPTR_0001s15790.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10660t00001" CDS 30569109..30570086 /locus_tag="TCM_015960" /codon_start=1 /product="C2H2-like zinc finger protein, putative" /protein_id="EOY24330.1" /db_xref="Phytozome:POPTR_0001s15790.1" /db_xref="TAIR:AT3G60580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUP5" /translation="MEKHKCKLCARTFSNGRALGGHMKGHLATHPLPPKTTQHQLGDR AESASSSSSSSGEEQELQEEKSREVVEEKSLVYGLRENPRKSFRFADPEFSFAVDSGS VVQDRESETESRNPTRRRSKRNRQVGTNITTDEIKKPKLLRKPSLVESPTEPEPVSSV SDTSPEEDVAMCLMLLSRDVWKTKNAEQKSVELLEESEEIDLNNKSELSKKIRGKYRC GNCKKVFRSYDTLDEHKRVCCETKNAGKVAAAAAVVVANNKIFQCPFCYRVFGSGQAL GGHKRSHLLAAASSSNAAAANSTKFDNKLIDLNLPAPSEDDEFSVVSDA" mobile_element 30574351..30575117 /note="source:INTACT135F_F90_scaffold_2-int 13223 14001" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 30575118..30575129 /note="source:scaffold_10_CACTA_0140 7281 7322" /mobile_element_type="transposon:TIR/CACTA" gene 30577534..30585718 /locus_tag="TCM_015961" /note="dbxref CacaoGD:Thecc1EG015961" mRNA join(30577534..30577985,30578121..30580053, 30580259..30580579,30580872..30580991,30581073..30581195, 30581332..30581487,30581934..30582059,30582177..30582311, 30582724..30582851,30582932..30583040,30583117..30583440, 30583546..30583695,30583808..30584106,30584488..30585718) /locus_tag="TCM_015961" /product="RGPR-related, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022127.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005600t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15800.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9710t3" CDS join(30578350..30580053,30580259..30580579, 30580872..30580991,30581073..30581195,30581332..30581487, 30581934..30582059,30582177..30582311,30582724..30582851, 30582932..30583040,30583117..30583440,30583546..30583695, 30583808..30584106,30584488..30584983) /locus_tag="TCM_015961" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005600t1" /codon_start=1 /product="RGPR-related, putative isoform 1" /protein_id="EOY24331.1" /db_xref="Phytozome:POPTR_0001s15800.1" /db_xref="TAIR:AT5G47490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUP4" /translation="MASNPPFQVEDQTDEDFFDKLVNDDDDDENMVPTVPKFTEGNES DDARAFANLAIGEDSGGEADNYDEKEKDPVDAGPAPANAQAGEDGCDSLGLDNRVIDS NNHREVRAGSEVGFDPNISKNNGSMNSGVKEVGWNSFYADSDENGVNGVGSYSEFFND LGENPTGDFPGEVDENAKPGALDQNSVSSYGQYHDGGQVYGASTVDNGNEQDLNSSQY WENMYPGWKYDANTGQWYQVDGYEGNLQGGYESSGGDGSGTTDVKAGVSYLQQAVQSV AGTMATAESGATESVTNSNQVSQVNNGYPEHMVFDPQYPGWYYDTVAQEWRTLESYDA SVQSSLQSTVQGYDQQNQNGFASAGGHSQSNCSSVYGKYGLGDNYGSQGLGSSGEHGN WGDSYGNYNSQGLNMWQPGTAAKTEAVSSFAGNQQLDTSFGSNMSVNSRANHLKSSYN SLQEVQLLNKASQVHTEVNGVVGFRSFVPSENFNHQFNQANLKQSEQMHFSNDIYGSQ NSVNVSQQPLQSSHQFSYASNTERSSAGRPPHALVTFGFGGKLIVMKDSSPLLNSSFS SQDSVGASITVLNLLEVVNGNSNGSGAALAASDYFRTLCQQSFPGPLVGGNAGSKELN KWIDDRIANCESPDMDYKKGEVLRLLLSLLKIACQHYGKLRSPFGADTVLKETDTPES AVAKLFASAKRNDTPYGALSHCLQQLPSEGQIRATASEVQHLLVSGRKKEALQCAQEG QLWGPALVLASQLGDQFYVDTVKLMALHQLVAGSPLRTLCLLIAGQPAEVFSTGTSVD GIDMSQQHAQLGANCMLDDWEENLAVITANRTKDDELVIIHLGDCLWKERSEITAAHI CYLVAEANFESYSDSARLCLIGADHWKFPRTYASPEAIQRTEFYEYSKVLGNSQFILL PFQPYKLIYAHMLAEVGRVSDSLKYCQAVLKSLKTGRAPEVETWKQLVLSLEDRIRIH QQGGYAANLAPAKLVGKLLNFFDSTAHRVVGGLPPPAPSASNGNSQVNDQFHQQSGPR VSSSQSTMAMSSLMSSASMEPISDWAGRAVDGRMTMHNRSVSEPDFGRTPRQVDSSKE AVASTAQGKASGSGGASRFARFGFGSQLLQKTVGLVLRPRTDKQAKLGEKNKFYYDEK LKRWVEEGAEPPAEEAALPPPPTTAAFQNGTSDYNLKSALKSEGSPPNGSPKFRNPTP IEHASGIPPIPASSNQFSARGRMGVRARYVDTFNQGGGGQANLFQSPSVPSVKPAVAA NAKFFIPTPASTNEQTMEAISESAQEENTTSNNPTKSNANESFQSPTPLSSMTMQRFP SMDNLAQKGIMRNANGFPPHSRRTASWSGGNLADAFSPPGKAEIRPLGEALGMPPSSF MPSPTNGSFGDELHEVEL" mRNA join(30578471..30580053,30580259..30580579, 30580872..30580991,30581073..30581195,30581332..30581487, 30581934..30582059,30582177..30582311,30582724..30582851, 30582932..30583040,30583117..30583440,30583546..30583695, 30583808..30584109,30584488..30585525) /locus_tag="TCM_015961" /product="RGPR-related, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022127.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005600t1" /inference="similar to AA sequence:ricco:29916.m000517" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9710t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9710t3" mRNA join(30578471..30580053,30580259..30580579, 30580872..30580991,30581073..30581195,30581332..30581485, 30581932..30582059,30582177..30582311,30582724..30582851, 30582932..30583040,30583117..30583440,30583546..30583696, 30583808..30584106,30584486..30585525) /locus_tag="TCM_015961" /product="RGPR-related, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022127.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005600t1" /inference="similar to AA sequence:ricco:29916.m000517" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9710t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9710t3" CDS join(30578728..30580053,30580259..30580579, 30580872..30580991,30581073..30581195,30581332..30581487, 30581934..30582059,30582177..30582311,30582724..30582851, 30582932..30583040,30583117..30583440,30583546..30583695, 30583808..30584109,30584488) /locus_tag="TCM_015961" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29916.m000517; paralog of Thecc1EG005600t1" /codon_start=1 /product="RGPR-related, putative isoform 3" /protein_id="EOY24333.1" /db_xref="TAIR:AT5G47490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUP4" /translation="MNSGVKEVGWNSFYADSDENGVNGVGSYSEFFNDLGENPTGDFP GEVDENAKPGALDQNSVSSYGQYHDGGQVYGASTVDNGNEQDLNSSQYWENMYPGWKY DANTGQWYQVDGYEGNLQGGYESSGGDGSGTTDVKAGVSYLQQAVQSVAGTMATAESG ATESVTNSNQVSQVNNGYPEHMVFDPQYPGWYYDTVAQEWRTLESYDASVQSSLQSTV QGYDQQNQNGFASAGGHSQSNCSSVYGKYGLGDNYGSQGLGSSGEHGNWGDSYGNYNS QGLNMWQPGTAAKTEAVSSFAGNQQLDTSFGSNMSVNSRANHLKSSYNSLQEVQLLNK ASQVHTEVNGVVGFRSFVPSENFNHQFNQANLKQSEQMHFSNDIYGSQNSVNVSQQPL QSSHQFSYASNTERSSAGRPPHALVTFGFGGKLIVMKDSSPLLNSSFSSQDSVGASIT VLNLLEVVNGNSNGSGAALAASDYFRTLCQQSFPGPLVGGNAGSKELNKWIDDRIANC ESPDMDYKKGEVLRLLLSLLKIACQHYGKLRSPFGADTVLKETDTPESAVAKLFASAK RNDTPYGALSHCLQQLPSEGQIRATASEVQHLLVSGRKKEALQCAQEGQLWGPALVLA SQLGDQFYVDTVKLMALHQLVAGSPLRTLCLLIAGQPAEVFSTGTSVDGIDMSQQHAQ LGANCMLDDWEENLAVITANRTKDDELVIIHLGDCLWKERSEITAAHICYLVAEANFE SYSDSARLCLIGADHWKFPRTYASPEAIQRTEFYEYSKVLGNSQFILLPFQPYKLIYA HMLAEVGRVSDSLKYCQAVLKSLKTGRAPEVETWKQLVLSLEDRIRIHQQGGYAANLA PAKLVGKLLNFFDSTAHRVVGGLPPPAPSASNGNSQVNDQFHQQSGPRVSSSQSTMAM SSLMSSASMEPISDWAGRAVDGRMTMHNRSVSEPDFGRTPRQVDSSKEAVASTAQGKA SGSGGASRFARFGFGSQLLQKTVGLVLRPRTDKQAKLGEKNKFYYDEKLKRWVEEGAE PPAEEAALPPPPTTAAFQNGTSDYNLKSALKSEGSPPNGSPKFRNPTPIEHASGIPPI PASSNQFSARGRMGVRAR" CDS join(30578728..30580053,30580259..30580579, 30580872..30580991,30581073..30581195,30581332..30581485, 30581932..30582059,30582177..30582311,30582724..30582851, 30582932..30583040,30583117..30583440,30583546..30583696, 30583808..30583812) /locus_tag="TCM_015961" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29916.m000517; paralog of Thecc1EG005600t1" /codon_start=1 /product="RGPR-related, putative isoform 2" /protein_id="EOY24332.1" /db_xref="TAIR:AT5G47490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUP4" /translation="MNSGVKEVGWNSFYADSDENGVNGVGSYSEFFNDLGENPTGDFP GEVDENAKPGALDQNSVSSYGQYHDGGQVYGASTVDNGNEQDLNSSQYWENMYPGWKY DANTGQWYQVDGYEGNLQGGYESSGGDGSGTTDVKAGVSYLQQAVQSVAGTMATAESG ATESVTNSNQVSQVNNGYPEHMVFDPQYPGWYYDTVAQEWRTLESYDASVQSSLQSTV QGYDQQNQNGFASAGGHSQSNCSSVYGKYGLGDNYGSQGLGSSGEHGNWGDSYGNYNS QGLNMWQPGTAAKTEAVSSFAGNQQLDTSFGSNMSVNSRANHLKSSYNSLQEVQLLNK ASQVHTEVNGVVGFRSFVPSENFNHQFNQANLKQSEQMHFSNDIYGSQNSVNVSQQPL QSSHQFSYASNTERSSAGRPPHALVTFGFGGKLIVMKDSSPLLNSSFSSQDSVGASIT VLNLLEVVNGNSNGSGAALAASDYFRTLCQQSFPGPLVGGNAGSKELNKWIDDRIANC ESPDMDYKKGEVLRLLLSLLKIACQHYGKLRSPFGADTVLKETDTPESAVAKLFASAK RNDTPYGALSHCLQQLPSEGQIRATASEVQHLLVSGRKKEALQCAQEGQLWGPALVLA SQLGDQFYVDTVKLMALHQLVAGSPLRTLCLLIAGQPAEVFSTGTSVDGIDMSQQHAQ LGANCMLDDWEENLAVITANRTKDDELVIIHLGDCLWKERSEITAAHICYLVAEANFE SYSDSARLCLIGADHWKFPRTYASPEAIQRTEFYEYSKVLGNSQFILLPFQPYKLIYA HMLAEVGRVSDSLKYCQAVLKSLKTGRAPEVETWKQLVLSLEDRIRIHQQGGYAANLA PAKLVGKLLNFFDSTAHRVVGGLPPPAPSASNGNSQVNDQFHQQSGPRVSSSQSTMAM SSLMSSASMEPISDWAGRAVDGRMTMHNRSVSEPDFGRTPRQVDSSKEAVASTAQGKA SGSGGASRFARFGFGSQLLQKTVGLVLRPRTDKQG" mobile_element 30585520..30586187 /note="source:scaffold_2_CACTA_0244 13495 14702" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30586188..30586740 /note="source:INTACT135F_F90_scaffold_2-int 13385 14001" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(30586674..30592379) /locus_tag="TCM_015963" /note="dbxref CacaoGD:Thecc1EG015963" mRNA complement(join(30586674..30587527,30587694..30587820, 30588063..30588137,30588233..30588328,30588552..30588638, 30588830..30588913,30589058..30589132,30589262..30589330, 30589419..30589496,30589904..30589984,30590237..30590374, 30590597..30590701,30591153..30591263,30591555..30591623, 30591694..30592379)) /locus_tag="TCM_015963" /product="Class II aminoacyl-tRNA and biotin synthetases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G17300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037720t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s01840.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04824t00001" mRNA complement(join(30587230..30587527,30587694..30587820, 30588063..30588137,30588222..30588328,30588552..30588638, 30588830..30588913,30589058..30589132,30589262..30589330, 30589419..30589496,30589904..30589984,30590237..30590374, 30590597..30590701,30591153..30591263,30591555..30591623, 30591694..30591918)) /locus_tag="TCM_015963" /product="Class II aminoacyl-tRNA and biotin synthetases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT4G17300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037720t2" /inference="similar to AA sequence:Phytozome:POPTR_0017s05750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc917t6; inference alignment:Newbler:10:TSA:cgbaP2_g04824t00001" CDS complement(join(30587412..30587527,30587694..30587820, 30588063..30588137,30588233..30588328,30588552..30588638, 30588830..30588913,30589058..30589132,30589262..30589330, 30589419..30589496,30589904..30589984,30590237..30590374, 30590597..30590701,30591153..30591263,30591555..30591623, 30591694..30592095)) /locus_tag="TCM_015963" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037720t1" /codon_start=1 /product="Class II aminoacyl-tRNA and biotin synthetases superfamily protein isoform 1" /protein_id="EOY24334.1" /db_xref="Phytozome:POPTR_0007s01840.1" /db_xref="TAIR:AT4G17300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48593" /translation="MAAAAAALAPATPLRYKPYSTLRFLSFYSKNLTTPRLSPPLPRR PFQFHSTVPPKRCFCSVVSAALQSGERTKTEFQEKKVCEMGNTVGEFRKKLKIADIKG GPDGGLDRVGQTLVVMGWVRTLRVQSSVTFLEVNDGSCLSNMQCVMNSDAEGYDQVES GLIATGASIWVQGTLVASQGAKQKVELKVDKVVVVGQSDPSYPIQKKRVSREFLRTKA HLRPRTNTFGAVARVRNALAYATHKFFQENGFVWISSPIITASDCEGAGEQFCVTTLI PSSREATDSPVRAIPNTKDGLIDWSQDFFGKPAFLTVSGQLNAETYATALSDVYTFGP TFRAENSNTTRHLAEFWMIEPELAFADLNDDTACATAYLQYVVRHVLDNCKEDMEFFN TWIEKGIIDRLNDVAEKDFVQLPYTDAIELLLKAKKKFEFPLKWGCDLQSEHERYITE EAFNGCPVIIRDYPKEIKAFYMRQNDDGRTVAAMDMLVPRVGELIGGSQREERLEYLE NRLDELKLSKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIENIRDTIPFPRTPG SAEF" CDS complement(join(30588089..30588137,30588222..30588328, 30588552..30588638,30588830..30588913,30589058..30589132, 30589262..30589330,30589419..30589496,30589904..30589984, 30590237..30590374,30590597..30590701,30591153..30591263, 30591555..30591623,30591694..30591846)) /locus_tag="TCM_015963" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037720t2" /codon_start=1 /product="Class II aminoacyl-tRNA and biotin synthetases superfamily protein isoform 2" /protein_id="EOY24335.1" /db_xref="Phytozome:POPTR_0017s05750.1" /db_xref="TAIR:AT4G17300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48593" /translation="MGNTVGEFRKKLKIADIKGGPDGGLDRVGQTLVVMGWVRTLRVQ SSVTFLEVNDGSCLSNMQCVMNSDAEGYDQVESGLIATGASIWVQGTLVASQGAKQKV ELKVDKVVVVGQSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK FFQENGFVWISSPIITASDCEGAGEQFCVTTLIPSSREATDSPVRAIPNTKDGLIDWS QDFFGKPAFLTVSGQLNAETYATALSDVYTFGPTFRAENSNTTRHLAEFWMIEPELAF ADLNDDTACATAYLQYVVRHVLDNCKEDMEFFNTWIEKGIIDRLNDVAEKDFVQLPYT DAIELLLKAKKKFEFPLKWGCDLQSEHERYITEEAFNGCPVIIRDYPKACNWRSRHSI CGKMMMGGL" gene 30592518..30594548 /locus_tag="TCM_015964" /note="dbxref CacaoGD:Thecc1EG015964" mRNA join(30592518..30593278,30593573..30594548) /locus_tag="TCM_015964" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29843.m000293.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001728t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc6335t1" CDS join(30592993..30593278,30593573..30593865) /locus_tag="TCM_015964" /note="paralog of Thecc1EG001728t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24336.1" /translation="MCSLQKTPKPTMLDDRSRKKVRFRNSSGDGFTQDDSVVVYNNPS FKATVLGSDSEEMLSGGDDDLVEGAKDESEFEMECDSAESDEEDFEYGSIEEMQDLIA VAAWVRFPGIPLHMYHKSILKRITSLIGRMLKIDHNTGAEKRGKFARVTVELDLSEPL TPKFFLNGKEQKIVYEGLPQVCFTCGVFGHTK" gene 30594794..30595161 /locus_tag="TCM_015965" /note="dbxref CacaoGD:Thecc1EG015965" mRNA 30594794..30595161 /locus_tag="TCM_015965" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc7643t1" CDS 30594875..30595141 /locus_tag="TCM_015965" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24337.1" /translation="MGVIRRLLKPLLLLFISLMNLKVLVWNCQGAGDRGFPHFANDLQ RIHNISIMILLEPRISGTNADKVIRSIKFDRSHKVEAIDFSGGF" gene 30595209..30595719 /locus_tag="TCM_015966" /note="dbxref CacaoGD:Thecc1EG015966" mRNA 30595209..30595719 /locus_tag="TCM_015966" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4624t1" CDS 30595251..30595445 /locus_tag="TCM_015966" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24338.1" /translation="MDIHITRLEERYGQNYLLLQSMSLVRGFYLGTLMPFYMLMIRLV VHHKVVSLVYIFNGLLMHMA" gene 30596057..30599049 /locus_tag="TCM_015967" /note="dbxref CacaoGD:Thecc1EG015967" mRNA join(30596057..30596305,30597055..30599049) /locus_tag="TCM_015967" /product="RNA-directed DNA polymerase (Reverse transcriptase), Polynucleotidyl transferase, Ribonuclease H fold-like protein" /inference="alignment:exonerate-protein:2:frave:gene17676" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17527t00001" CDS join(30596272..30596305,30597055..30598871) /locus_tag="TCM_015967" /codon_start=1 /product="RNA-directed DNA polymerase (Reverse transcriptase), Polynucleotidyl transferase, Ribonuclease H fold-like protein" /protein_id="EOY24339.1" /db_xref="TAIR:AT5G42905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HVE2" /translation="MGYTPCFSKISGEKVNVHKSSFYYSANVSKECIENLRNISGLSY STNLGNYLGVPLFHGRKRITSFKFLEDKVRSKLSGWKAFSLSFAGILTLVKSVLSTIP YYVMQIVSIPLDSCKRMERYCQNFLWGGDADHKRIHLIRCNQICRPKEERSLGVKRLH VMNNAFLMKLLWQLVTRPKSLWVSIIRGKYNFNMDRRSSSIYCHGASHTWNALSKLWN VFNNNLRWVLGDGLSIRFWKDIWLEDTPLLEQGHTLNIVTSENCCVREFLLDTGEWNH EKLATCLHSDLVNKILMFLPPLLSFKPDTPYWASSASGVCTVASTYEVLREDYPNYIG QQSRKWAIAWKWDGPQRIRTFLMQCLHGKLLTNLECRRRNMSSSATCALCSVSDESVL HLLRDCPHSKEVWLKLGSRMGYGNFFDLLLSDWLLTNLKNYNVCVDGIPWVILFGFTC WYIWKWRNVKVFEGKLIPMDRKLSMIKGLVAASYHAVQIPCTHSRLNGYKREMLVGWQ NPPQGWVAVNTDGALRRNTNMAAAGGVFRDCNEYWLGGFAAKLGKCYSYRAELWGVLH SLRIVKEKGFSKIWLQVDNKIVVKAIISSALHPCANSDLLNAIHGLLQLD" gene 30600991..30602983 /locus_tag="TCM_015968" /note="dbxref CacaoGD:Thecc1EG015968" mRNA join(30600991..30601948,30602167..30602983) /locus_tag="TCM_015968" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene08933" /inference="similar to AA sequence:ricco:29916.m000519" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1685t3" CDS join(30601926..30601948,30602167..30602662) /locus_tag="TCM_015968" /note="dbxref ricco:29916.m000519" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BLB9" /translation="MARGIKRTVVTVEETPRIDCSDSQRHRMKRKMRGGQGGKCTKTL EASRPKIGPRKRKAVIPLICDLCNVKCDTEEAFDGHLSGKKHTAKLKRFGPVGIEVLY PPNPIGQSMLLPQGNQETVHSPQGSHRAAGAYMPPQIRQAAPAASGLSLQYQQNHDQI APKNAVILAPEA" gene 30604094..30607307 /locus_tag="TCM_015969" /note="dbxref CacaoGD:Thecc1EG015969" mRNA join(30604094..30604149,30604252..30604300, 30604574..30604859,30606074..30606390,30606968..30607307) /locus_tag="TCM_015969" /product="Peroxin 19-2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001328001" /inference="similar to AA sequence:Phytozome:Glyma17g15080.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01903t00001" CDS join(30604110..30604149,30604252..30604300, 30604574..30604859,30606074..30606390,30606968..30607013) /locus_tag="TCM_015969" /codon_start=1 /product="Peroxin 19-2" /protein_id="EOY24341.1" /db_xref="Phytozome:Glyma17g15080.1" /db_xref="TAIR:AT5G17550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRQ3" /translation="MADHSDDLDQLLDSALDDFQNLNLTPPSQRGGGGDGEEKKPESG SLPSGVQGLGMGLPDLKSKKKGKQKVLRESHVTEALDKLREQTRETVKGLESMSKPGG DDLGKDAMMEDWVKQFEELAGSQDMESIVETMMQQLLSKEILHEPMKEIGERYPQWLE EHEASLSKEEYERYSHQHELIKELNGVYENEPNNFTRIVDLMQKMQECGQPPNDIVQE LAPEFDLSNLGQLSPEMLESQQNCCIM" gene complement(30607470..30610393) /locus_tag="TCM_015970" /note="dbxref CacaoGD:Thecc1EG015970" mRNA complement(join(30607470..30607832,30608370..30608608, 30609091..30609297,30609616..30609805,30610003..30610393)) /locus_tag="TCM_015970" /product="Pectin lyase-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29916.m000522" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037769t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07460.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08977t00001" CDS complement(join(30607676..30607832,30608370..30608608, 30609091..30609297,30609616..30609805,30610003..30610298)) /locus_tag="TCM_015970" /note="paralog of Thecc1EG037769t1" /codon_start=1 /product="Pectin lyase-like superfamily protein" /protein_id="EOY24342.1" /db_xref="Phytozome:POPTR_0003s07460.1" /db_xref="TAIR:AT5G47500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPF3" /translation="MESFSSFLFFYFCFFFVSASFFCHAPPLSLATSSVVNATASTTN STGHHHKWIGPIGHQRITVDVNGSGHFRSVQDAVDAVSENNRKNVLIQISPGYYIEKV VVPATKPYITFQGSGRDVTFIEWHDRACDRGANGQQLRTYQTASVTVYANYFSARNIS FKNTAPAPMPGMQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGS IDFIFGNGRSMYKDCELHSIATRFGSIAAHDRSSPDERTGFAFVRCKVTGTGPLYVGR AMGQYSRIVYAYTYFDDLVAHGGWDDWDHVSNKNKTVFFGVYKCWGPGAAAVRGVSWA RELDFDAAHPFLVKSFVNGRHWIAQWDA" gene complement(30610972..30617667) /locus_tag="TCM_015971" /note="dbxref CacaoGD:Thecc1EG015971" mRNA complement(join(30610972..30611315,30612928..30613480, 30613574..30613721,30613826..30614027,30614144..30614402, 30617201..30617667)) /locus_tag="TCM_015971" /product="Nucleotide-diphospho-sugar transferases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g04630.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400008436" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9856t1" CDS complement(join(30612940..30613480,30613574..30613721, 30613826..30614027,30614144..30614402,30617201..30617481)) /locus_tag="TCM_015971" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein" /protein_id="EOY24343.1" /db_xref="Phytozome:PGSC0003DMP400008436" /db_xref="TAIR:AT4G16600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZP6" /translation="MGWSGERRKEVVTILRVLLVLLAVVQTTAFHGVKLKKQEHRNAY ATMMYMGTPRDYEFYVAIRVLIRSLVRLQVDADLVVIASLDVPLRWVRALEQEDGAKV MRVENINNPYKNQKYFDERFKLTLNKLYAWKLVDYERVVMLDADNLFLQKTDELFQCG QFCAVFINPCIFHTGLFVLQPSLEVFKDMIHQLETGKENPDGADQGFIGVYFPDLLNQ PMFHPPLNGTKLDGQYRLPLGYQMDASYYYLRLCWRVPCGPNSVITFPGALWLKPWYW WSWPVLPLGIQWHENRRQTLGYAAEMPIIIIQSVVFIGIIVMTRLARPSISKLCYRPS DKGTTLIRTGLKVIAIWSILAAYIVPFAIVPRTIHPLVGWTLYFLGSIALSSIAINSF MLPVIPVFAPLLGIFGSLLVMACPWYPNGVIRALAVFGYAFCYAPIAWGSVVRVVSRL QVSLEREQFFPRLGESSPPPGSNKLY" mobile_element complement(30617492..30617543) /note="source:CACAO_M_S_E51536_F22_scaffold_4 1788 1842" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(30621997..30623707) /locus_tag="TCM_015972" /note="dbxref CacaoGD:Thecc1EG015972" mRNA complement(join(30621997..30622209,30623335..30623707)) /locus_tag="TCM_015972" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15830.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15830.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1905t3" mRNA complement(join(30622253..30622391,30623335..>30623685)) /locus_tag="TCM_015972" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15830.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15830.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1957t2_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1905t3" CDS complement(30623352..30623693) /locus_tag="TCM_015972" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24344.1" /db_xref="Phytozome:POPTR_0001s15830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GYB1" /translation="MGLHLLALAKLYLLSPSRSFTPLPAGFICPFVLKLSFSLRIVRR VYIDVIDASRLFLFQLSQIAFEADQPAPENGDRWERALRLVCQRITHVRRSPMGQSDE DSFRTLTMLSL" CDS complement(30623352..>30623684) /locus_tag="TCM_015972" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24345.1" /db_xref="Phytozome:POPTR_0001s15830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GYB1" /translation="HLLALAKLYLLSPSRSFTPLPAGFICPFVLKLSFSLRIVRRVYI DVIDASRLFLFQLSQIAFEADQPAPENGDRWERALRLVCQRITHVRRSPMGQSDEDSF RTLTMLSL" gene complement(30624235..30625191) /locus_tag="TCM_015973" /note="dbxref CacaoGD:Thecc1EG015973" mRNA complement(30624235..30625191) /locus_tag="TCM_015973" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" CDS complement(30624863..30625183) /locus_tag="TCM_015973" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24346.1" /translation="MVCSLPMPMCIINVDLYEQLIALRNKAIWIIYINAQEDKFFYVV FFPKDKMAIGDAIFGIHQLELWTKVGHENLIPNYSKYHKRTLLQLFFLTTSWLMAGMA IHGE" gene 30625114..30632821 /locus_tag="TCM_015974" /note="dbxref CacaoGD:Thecc1EG015974" mRNA join(30625114..30625167,30626560..30627175, 30627281..30627567,30627747..30627944,30628028..30628142, 30628273..30628359,30629063..30629151,30629983..30630067, 30630355..30630408,30631073..30631153,30631263..30631340, 30631720..30631959,30632307..30632414,30632514..30632821) /locus_tag="TCM_015974" /product="DNAJ heat shock N-terminal domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001321001" /inference="similar to AA sequence:Phytozome:GSVIVT01001321001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05558t00001" mobile_element complement(30625991..30626197) /note="source:CACAO_PIF_E144_scaffold_10 2175 2401" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(30627029..30627175,30627281..30627567, 30627747..30627944,30628028..30628142,30628273..30628359, 30629063..30629151,30629983..30630067,30630355..30630408, 30631073..30631153,30631263..30631340,30631720..30631959, 30632307..30632414,30632514..30632570) /locus_tag="TCM_015974" /codon_start=1 /product="DNAJ heat shock N-terminal domain-containing protein" /protein_id="EOY24347.1" /db_xref="Phytozome:GSVIVT01001321001" /db_xref="TAIR:AT2G35720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUN9" /translation="MKEDGASGPPSKELYALLHLSPDASDEEIRRAYRQWAQVYHPDK YQAPHMKEIATENFQRICEAYEILTDESKRQIYDIYGMEGLTSGLELGPKLNKVEEIK EELEKLKRRKEQEKISTHFRPSGTILANLSLPQFLDGDGIIGGMAMASEVQSQLSKRN ALAIGGNLEVKQNSGGGVASAVFRHQISSVSSIEFMGSAGLRGLVGVQMTRHTSLHST ATISIAKSLQDGSINLSNTWTRQLSDTASGNIELLLGPEPSIGVGWVKKDQNMSASGE VKFGTNSFGASAHYTRRFSSKSHGRIAGRIGSTAFEVEVGGGRKVSDFSTVRMLYTIG IRGIFWKFELHRGGQKLIIPILLSRHLNPVLATGAFVVPTSIYFILKKFVFKPYYLKR EKQKALENMEKTATQVREAREAAAKAQQLLENVARRKRNKQQETDGLVITKAVYGNRK ALKKGDELRETNDELASQVLDVTLPLNFLVTDPGQLKLHDGVKKSGIMGFCDPCPGEP KQLHVEYTYHGQRYEVVVDDYEELQIPQVAHRI" gene complement(30632828..30637842) /locus_tag="TCM_015975" /note="dbxref CacaoGD:Thecc1EG015975" mRNA complement(join(30632828..30633451,30633610..30633706, 30633814..30633888,30633969..30634118,30634286..30634379, 30634503..30634576,30634979..30635215,30635397..30635668, 30635933..30636012,30636096..30636214,30636301..30636465, 30636571..30636696,30636855..30637062,30637297..30637842)) /locus_tag="TCM_015975" /product="Arginine methyltransferase 7, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07410.1" /inference="similar to AA sequence:Phytozome:GSVIVT01001320001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9751t3" mRNA complement(join(30633005..30633451,30633610..30633706, 30633969..30634118,30634286..30634379,30634503..30634576, 30634979..30635215,30635397..30635668,30635933..30636012, 30636096..30636214,30636301..30636465,30636571..30636696, 30636855..30637062,30637297..30637729)) /locus_tag="TCM_015975" /product="Arginine methyltransferase 7, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07410.1" /inference="similar to AA sequence:Phytozome:GSVIVT01001320001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc265t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9751t3" mRNA complement(join(30633005..30633475,30633610..30633706, 30633814..30633888,30633969..30634118,30634286..30634379, 30634503..30634576,30634979..30635215,30635397..30635668, 30635933..30636012,30636096..30636214,30636301..30636465, 30636571..30636696,30636855..30637062,30637297..30637729)) /locus_tag="TCM_015975" /product="Arginine methyltransferase 7, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07410.1" /inference="similar to AA sequence:Phytozome:GSVIVT01001320001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc265t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9751t3" mRNA complement(join(30633005..30633451,30633610..30633888, 30633969..30634118,30634286..30634379,30634503..30634576, 30634979..30635215,30635397..30635668,30635933..30636012, 30636096..30636214,30636301..30636465,30636571..30636696, 30636855..30637062,30637297..30637729)) /locus_tag="TCM_015975" /product="Arginine N-methyltransferase 1.6 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07410.1" /inference="similar to AA sequence:Phytozome:GSVIVT01001320001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc265t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9751t3" CDS complement(join(30633294..30633451,30633610..30633706, 30633969..30634118,30634286..30634379,30634503..30634576, 30634979..30635215,30635397..30635668,30635933..30636012, 30636096..30636214,30636301..30636465,30636571..30636696, 30636855..30637062,30637297..30637640)) /locus_tag="TCM_015975" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Arginine methyltransferase 7, putative isoform 4" /protein_id="EOY24351.1" /db_xref="Phytozome:GSVIVT01001320001" /db_xref="TAIR:AT4G16570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944R7" /translation="MNALIYKTLIPSISLRLSTRLTLILNSFLHFKAPLPRAMSSYSP QQVFQLKLDPLTGNSEWVVIQDSDELPECSKEPLLASTSYLDMLNDSHRNKAFRLAID KTVTKPCHVLDIGAGTGLLSMMAARAMGLNGRVTACESYLPMAKLMRKVLHRNGIGKN INLINKRSDELEVGVDNPSRADVLVSEILDSELLGEGLIPTLQHAHDKLLVENPLTVP YRAVTYGQLVESPYLWKLHDLFGSEAKASDGIHLVPTGLETVIHFKLQQHPMHCDAIR KEIKLLSEPFKIFEFDFWKRPDSHGKTKVQIKMTDTGCIHAVVSWWILQLDREGTVFY STAPSWISSAAKIGSGNWCDHWKQCVWFLQGKGMPVSEGEEVLLEATHEETSVSYNLS VLGSQTDIREHDQRIGDFQLLVSPERIATYGDSEWRLSVLAAVRKALQGRVNPLCVVA DDSIFLTLLAANLSKTSHVISLFPGLRDKGAKYVETVAKANAFSMDRVEVPEKWKACL TMLDTHGKKVDLLIGEPYYYANEGMLPWQNLRFWRDRTLLDPVLSEDALIMPCKGILK ACAMSLPDLWNSRCCLGEVEGFDHSVVNTTLGACGELPAPKESPCLPFCVWQCGEIKV QFTEHGICHGFVLWMDWVMDAENSIVVSTRPDHRYWKQGVKLLTKPVAVGIHGSKTTN EFGSTIIEAFFDPSSSELIIKHTFS" CDS complement(join(30633294..30633451,30633610..30633706, 30633814..30633888,30633969..30634118,30634286..30634379, 30634503..30634576,30634979..30635215,30635397..30635668, 30635933..30636012,30636096..30636214,30636301..30636465, 30636571..30636696,30636855..30637062,30637297..30637640)) /locus_tag="TCM_015975" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Arginine methyltransferase 7, putative isoform 1" /protein_id="EOY24348.1" /db_xref="Phytozome:GSVIVT01001320001" /db_xref="TAIR:AT4G16570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944R7" /translation="MNALIYKTLIPSISLRLSTRLTLILNSFLHFKAPLPRAMSSYSP QQVFQLKLDPLTGNSEWVVIQDSDELPECSKEPLLASTSYLDMLNDSHRNKAFRLAID KTVTKPCHVLDIGAGTGLLSMMAARAMGLNGRVTACESYLPMAKLMRKVLHRNGIGKN INLINKRSDELEVGVDNPSRADVLVSEILDSELLGEGLIPTLQHAHDKLLVENPLTVP YRAVTYGQLVESPYLWKLHDLFGSEAKASDGIHLVPTGLETVIHFKLQQHPMHCDAIR KEIKLLSEPFKIFEFDFWKRPDSHGKTKVQIKMTDTGCIHAVVSWWILQLDREGTVFY STAPSWISSAAKIGSGNWCDHWKQCVWFLQGKGMPVSEGEEVLLEATHEETSVSYNLS VLGSQTDIREHDQRIGDFQLLVSPERIATYGDSEWRLSVLAAVRKALQGRVNPLCVVA DDSIFLTLLAANLSKTSHVISLFPGLRDKGAKYVETVAKANAFSMDRVEVPEKWKACL TMLDTHGKKVDLLIGEPYYYANEGMLPWQNLRFWRDRTLLDPVLSEDALIMPCKGILK ACAMSLPDLWNSRCCLGEVEGFDHSVVNTTLGACGELPAPKESPCLPFCVWQCGEIKE LSEIFTILEFDFLKLMTSCYGKAQVQFTEHGICHGFVLWMDWVMDAENSIVVSTRPDH RYWKQGVKLLTKPVAVGIHGSKTTNEFGSTIIEAFFDPSSSELIIKHTFS" CDS complement(join(30633294..30633475,30633610..30633706, 30633814..30633888,30633969..30634118,30634286..30634379, 30634503..30634576,30634979..30635215,30635397..30635668, 30635933..30636012,30636096..30636214,30636301..30636465, 30636571..30636696,30636855..30637062,30637297..30637640)) /locus_tag="TCM_015975" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Arginine methyltransferase 7, putative isoform 2" /protein_id="EOY24349.1" /db_xref="Phytozome:GSVIVT01001320001" /db_xref="TAIR:AT4G16570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944R7" /translation="MNALIYKTLIPSISLRLSTRLTLILNSFLHFKAPLPRAMSSYSP QQVFQLKLDPLTGNSEWVVIQDSDELPECSKEPLLASTSYLDMLNDSHRNKAFRLAID KTVTKPCHVLDIGAGTGLLSMMAARAMGLNGRVTACESYLPMAKLMRKVLHRNGIGKN INLINKRSDELEVGVDNPSRADVLVSEILDSELLGEGLIPTLQHAHDKLLVENPLTVP YRAVTYGQLVESPYLWKLHDLFGSEAKASDGIHLVPTGLETVIHFKLQQHPMHCDAIR KEIKLLSEPFKIFEFDFWKRPDSHGKTKVQIKMTDTGCIHAVVSWWILQLDREGTVFY STAPSWISSAAKIGSGNWCDHWKQCVWFLQGKGMPVSEGEEVLLEATHEETSVSYNLS VLGSQTDIREHDQRIGDFQLLVSPERIATYGDSEWRLSVLAAVRKALQGRVNPLCVVA DDSIFLTLLAANLSKTSHVISLFPGLRDKGAKYVETVAKANAFSMDRVEVPEKWKACL TMLDTHGKKVDLLIGEPYYYANEGMLPWQNLRFWRDRTLLDPVLSEDALIMPCKGILK ACAMSLPDLWNSRCCLGEVEGFDHSVVNTTLGACGELPAPKESPCLPFCVWQCGEIKE LSEIFTILEFDFLKLMTSCYGKAQVQFTEHGICHGFVLWMDWVMDAENSIVVSTRPGV LLHVGSDHRYWKQGVKLLTKPVAVGIHGSKTTNEFGSTIIEAFFDPSSSELIIKHTFS " CDS complement(join(30633649..30633888,30633969..30634118, 30634286..30634379,30634503..30634576,30634979..30635215, 30635397..30635668,30635933..30636012,30636096..30636214, 30636301..30636465,30636571..30636696,30636855..30637062, 30637297..30637640)) /locus_tag="TCM_015975" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Arginine N-methyltransferase 1.6 isoform 3" /protein_id="EOY24350.1" /db_xref="Phytozome:GSVIVT01001320001" /db_xref="TAIR:AT4G16570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944R7" /translation="MNALIYKTLIPSISLRLSTRLTLILNSFLHFKAPLPRAMSSYSP QQVFQLKLDPLTGNSEWVVIQDSDELPECSKEPLLASTSYLDMLNDSHRNKAFRLAID KTVTKPCHVLDIGAGTGLLSMMAARAMGLNGRVTACESYLPMAKLMRKVLHRNGIGKN INLINKRSDELEVGVDNPSRADVLVSEILDSELLGEGLIPTLQHAHDKLLVENPLTVP YRAVTYGQLVESPYLWKLHDLFGSEAKASDGIHLVPTGLETVIHFKLQQHPMHCDAIR KEIKLLSEPFKIFEFDFWKRPDSHGKTKVQIKMTDTGCIHAVVSWWILQLDREGTVFY STAPSWISSAAKIGSGNWCDHWKQCVWFLQGKGMPVSEGEEVLLEATHEETSVSYNLS VLGSQTDIREHDQRIGDFQLLVSPERIATYGDSEWRLSVLAAVRKALQGRVNPLCVVA DDSIFLTLLAANLSKTSHVISLFPGLRDKGAKYVETVAKANAFSMDRVEVPEKWKACL TMLDTHGKKVDLLIGEPYYYANEGMLPWQNLRFWRDRTLLDPVLSEDALIMPCKGILK ACAMSLPDLWNSRCCLGEVEGFDHSVVNTTLGACGELPAPKESPCLPFCVWQCGEIKE LSEIFTILEFDFLKLMTSCYGKAQVHLPPLPKMKKEAYTSSETINDVIISLQLILCLS YRFNSLNMVFVMDLFYGWIG" gene 30637894..30640324 /locus_tag="TCM_015976" /note="dbxref CacaoGD:Thecc1EG015976" mRNA join(30637894..30638049,30638186..30638232, 30638364..30638440,30638530..30638596,30639465..30639542, 30639674..30639776,30640121..30640324) /locus_tag="TCM_015976" /product="Histidine triad nucleotide-binding 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07400.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07400.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03309t00002" mRNA join(30637894..30638049,30638186..30638232, 30638364..30638440,30638530..30638596,30639465..30639828) /locus_tag="TCM_015976" /product="Histidine triad nucleotide-binding 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07400.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07400.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b015440t1a3; inference alignment:Newbler:10:TSA:cgbaB_g03309t00002" CDS join(30637966..30638049,30638186..30638232, 30638364..30638440,30638530..30638596,30639465..30639542, 30639674..30639776) /locus_tag="TCM_015976" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Histidine triad nucleotide-binding 4 isoform 1" /protein_id="EOY24352.1" /db_xref="Phytozome:POPTR_0003s07400.1" /db_xref="TAIR:AT4G16566.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84VV6" /translation="MAGATSPSQPCIFCQIARGSTSTPLLHADDKVVAFQDIKPSAFR HYLVIPVEHIPTVRDLQRRNEDYALVSHMLNVGQTLLRRDAPQSNQYRFGFHQPPLNS VHHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKPLSPIPS" CDS join(30637966..30638049,30638186..30638232, 30638364..30638440,30638530..30638596,30639465..30639546) /locus_tag="TCM_015976" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Histidine triad nucleotide-binding 4 isoform 2" /protein_id="EOY24353.1" /db_xref="Phytozome:POPTR_0003s07400.1" /db_xref="TAIR:AT4G16566.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84VV6" /translation="MAGATSPSQPCIFCQIARGSTSTPLLHADDKVVAFQDIKPSAFR HYLVIPVEHIPTVRDLQRRNEDYALVSHMLNVGQTLLRRDAPQSNQYRFGFHQPPLNS VHHLHLHCLALPFIPR" gene complement(30640621..30642309) /locus_tag="TCM_015977" /note="dbxref CacaoGD:Thecc1EG015977" mRNA complement(join(30640621..30641275,30641558..30641685, 30641826..30642309)) /locus_tag="TCM_015977" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.22 coverage" CDS complement(join(30641199..30641275,30641558..30641685, 30641826..30641932)) /locus_tag="TCM_015977" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24354.1" /translation="MISSSQPCLPSKSWLPCFEEEKVGAVNVLLHSFFRSLTLVEKPI GGFEFVKRDRLMNVLPNGWYTYLNDSMRFGHILSDLRALPSQDSHFDRLMYGNTRITS D" gene 30645141..30647468 /locus_tag="TCM_015978" /note="dbxref CacaoGD:Thecc1EG015978" mRNA 30645141..30647468 /locus_tag="TCM_015978" /product="Eukaryotic aspartyl protease family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001318001" /inference="similar to AA sequence:ricco:29916.m000529" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04964t00001" CDS 30645239..30646681 /locus_tag="TCM_015978" /note="dbxref ricco:29916.m000529" /codon_start=1 /product="Eukaryotic aspartyl protease family protein" /protein_id="EOY24355.1" /db_xref="TAIR:AT4G16563.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XU71" /translation="MATSLCLLYLLLFSTCWLTISMSEMVLLPLTHSLSKTQFTTPHH LLKTTSARSAARFHQRNHRHKQVSLPLSPGSDYTLSFTLGSPSSPTISLYLDTGSDLV WLPCSPFECILCESKPPLSPPLNLSSSATAVPCKSSACSAAHSSLPSSDLCAIARCPL DSIETSDCNSFPCPPFYYAYGDGSLIARLFKDSLTLPNSLSIQNFTFGCAHTALGEPV GVAGFGFGRLSLPAQLSSVSPQLGNRFSYCLVSHSFDSDKVGRPSPLILGRHEEQEKQ FGNENVEFVYTDMLSNPKHPYFYSVGFEGISVGKRNIPAPENLKRVDRRGSGGMVVDS GTTFTMLPASLYDSVVTEFDHRVGRVYERASEVEETTGMSPCYYYDKVAKVPVISLHF VGNGSSVVLPRRNYFYEFLDGGDGVRKKRNVGCLMLMNGGDEKELIGGPGATLGNYQQ QGFEVVYDLEKRKVGFARRKCSSLWDNLKN" gene 30649934..30654902 /locus_tag="TCM_015979" /note="dbxref CacaoGD:Thecc1EG015979" mRNA join(30649934..30650906,30651005..30651104, 30651427..30651693,30651876..30651953,30652390..30652491, 30652622..30652671,30652790..30652898,30653021..30653098, 30653871..30653981,30654053..30654094,30654187..30654243, 30654337..30654378,30654600..30654749) /locus_tag="TCM_015979" /product="Sec14p-like phosphatidylinositol transfer family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000307t1" /inference="similar to AA sequence:frave:gene08953" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9744t2" CDS join(30650521..30650906,30651005..30651104, 30651427..30651693,30651876..30651953,30652390..30652491, 30652622..30652671,30652790..30652898,30653021..30653098, 30653871..30653981,30654053..30654094,30654187..30654231) /locus_tag="TCM_015979" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene08953; paralog of Thecc1EG000307t1" /codon_start=1 /product="Sec14p-like phosphatidylinositol transfer family protein isoform 1" /protein_id="EOY24356.1" /db_xref="TAIR:AT5G47510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGK6" /translation="MHKSNEKYREIVIDKGGGESEDSPSRETSQFQKGMDKHIHPPIE NHFLLPPQREKPSSSTTSSGLKSMLSYPLKVRDSLKRIGKSKSMELILEGTHDPKDEQ IVQSFRELLFLEGQLPAKHNDYHTLLRFLRMRDFDLSKAKEMFLKYLQWRKDYGVDAI QREFKFVELTEVKKCYPHGFHGVDRSGRPVYIERIGLVDLNALLQVTNIDRFVKYHVS EQEKTLNLRFPASSIAAKRHIASTTSILDVKGVGMSNFSKPARYLFMEIQKIDSNYYP ETLNRLFIINAGSGFRMLWKVIKAFMDARTLAKINVLGYNYLSNLIEVIDPSNLPTFL GGNCTCADYGGCLLSDKGPWNNPEITEMLQAVCATEEANYEGNGDLASEDALLHDVDD GENNENLRNGERAKSDRLAPQKIMALEAALADTNKKIDALEVALEDTKMVLKGLGQHI KDLRV" mRNA join(30650774..30650906,30651005..30651104, 30651427..30651693,30651876..30651953,30652390..30652491, 30652622..30652671,30652790..30652898,30653021..30653098, 30653871..30653981,30654053..30654094,30654187..30654243, 30654337..30654359,30654600..30654902) /locus_tag="TCM_015979" /product="Sec14p-like phosphatidylinositol transfer family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001318001" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000307t1" /inference="similar to AA sequence:frave:gene08953" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9744t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9744t2" CDS join(30650782..30650906,30651005..30651104, 30651427..30651693,30651876..30651953,30652390..30652491, 30652622..30652671,30652790..30652898,30653021..30653098, 30653871..30653981,30654053..30654094,30654187..30654231) /locus_tag="TCM_015979" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene08953; paralog of Thecc1EG000307t1" /codon_start=1 /product="Sec14p-like phosphatidylinositol transfer family protein isoform 2" /protein_id="EOY24357.1" /db_xref="TAIR:AT5G47510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGK6" /translation="MELILEGTHDPKDEQIVQSFRELLFLEGQLPAKHNDYHTLLRFL RMRDFDLSKAKEMFLKYLQWRKDYGVDAIQREFKFVELTEVKKCYPHGFHGVDRSGRP VYIERIGLVDLNALLQVTNIDRFVKYHVSEQEKTLNLRFPASSIAAKRHIASTTSILD VKGVGMSNFSKPARYLFMEIQKIDSNYYPETLNRLFIINAGSGFRMLWKVIKAFMDAR TLAKINVLGYNYLSNLIEVIDPSNLPTFLGGNCTCADYGGCLLSDKGPWNNPEITEML QAVCATEEANYEGNGDLASEDALLHDVDDGENNENLRNGERAKSDRLAPQKIMALEAA LADTNKKIDALEVALEDTKMVLKGLGQHIKDLRV" gene 30655567..30660262 /locus_tag="TCM_015980" /note="dbxref CacaoGD:Thecc1EG015980" mRNA join(30655567..30655963,30656039..30656538, 30656639..30656709,30656974..30657055,30657144..30657259, 30657349..30657513,30657611..30657661,30658806..30658883, 30659465..30659667,30659794..30659868,30659980..30660069, 30660239..30660262) /locus_tag="TCM_015980" /product="Plant VAP" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005577t1" /inference="similar to AA sequence:Phytozome:Glyma11g03480.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9828t3" CDS join(30656487..30656538,30656639..30656709, 30656974..30657055,30657144..30657259,30657349..30657513, 30657611..30657661,30658806..30658883,30659465..30659575) /locus_tag="TCM_015980" /note="paralog of Thecc1EG005577t1" /codon_start=1 /product="Plant VAP" /protein_id="EOY24358.1" /db_xref="Phytozome:Glyma11g03480.1" /db_xref="TAIR:AT2G45140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHC8" /translation="MSTGDLLSIEPLELKFPFELRKQISCSLLLSNKTDNYVAFKVKT TNPKKYCVRPNTGIVLPRSTCDVIVTMQAQKEAPPDMQCKDKFLLQSVNVNDGATVKD ITAEMFNKEAGHVVEECKLRVVYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNAAEF ANAARAFSERLESQDKSSEARALISKLTEEKNNAIQQNNKLRQELELLRRQGSKRSGG VSFMFVIFIGLLGIIMGYLMKKS" gene 30660317..30661800 /locus_tag="TCM_015982" /note="dbxref CacaoGD:Thecc1EG015982" mRNA join(30660317..30660573,30661188..30661800) /locus_tag="TCM_015982" /product="Small heat shock protein, putative" /inference="alignment:exonerate- protein:2:ricco:29916.m000533" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014924t1" /inference="similar to AA sequence:ricco:29916.m000533" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01142t00001" CDS join(30660342..30660573,30661188..30661600) /locus_tag="TCM_015982" /note="dbxref ricco:29916.m000533; paralog of Thecc1EG014924t1" /codon_start=1 /product="Small heat shock protein, putative" /protein_id="EOY24359.1" /db_xref="TAIR:AT4G25200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E7BXE0" /translation="MASSIALRKVPVSALFSKLVNFSPVRTVSAATPSVSRSFNTNTQ VTNFNDEDRSVYVEHRSDRSVSRRRDYSPGFFSDVFDPFSPTRSLSQVLNLMDQFIDH PFLSSPSVSSRKGWDVREDNNALYLRIEMPGLSKENVNISVDQNTLIIREEGGKQSED DQESGRRYSSWLDLPPSTYKVDEIKAEMKHGVLKVVVPKVKGEERQDVYQVTVE" mobile_element complement(30660955..30661019) /note="source:MITE_Unknow_2_17 469 534" /mobile_element_type="transposon:TIR/MITE" gene 30661867..30663381 /locus_tag="TCM_015983" /note="dbxref CacaoGD:Thecc1EG015983" mRNA join(30661867..30662486,30662613..30663381) /locus_tag="TCM_015983" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1791t1" CDS join(30662357..30662486,30662613..30662764) /locus_tag="TCM_015983" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24360.1" /translation="MAASFVVRSFSSNIPVSDPDEELCSINTCGGSMNCTVEFNIGHG ASDQTVEHPWQLEGPKGTYQAKKVEEGLFVRVDMAGISKSEVQLNLEGR" gene 30663658..30665710 /locus_tag="TCM_015984" /note="dbxref CacaoGD:Thecc1EG015984" mRNA join(30663658..30663825,30663956..30664324, 30664421..30664435,30664593..30664610,30664733..30664744, 30665034..30665710) /locus_tag="TCM_015984" /product="Heat shock protein HSP20/alpha crystallin family, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G47590.1" /inference="similar to AA sequence:ricco:29916.m000538" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9759t2" mRNA join(30663658..30663825,30663956..30664324, 30664421..30664435,30664593..30664610,30665034..30665395) /locus_tag="TCM_015984" /product="Heat shock protein HSP20/alpha crystallin family, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G47590.1" /inference="similar to AA sequence:ricco:29916.m000538" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9759t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9759t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4716t3_C1" CDS join(30663780..30663825,30663956..30664324, 30664421..30664435,30664593..30664610,30664733..30664744, 30665034..30665356) /locus_tag="TCM_015984" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29916.m000538" /codon_start=1 /product="Heat shock protein HSP20/alpha crystallin family, putative isoform 1" /protein_id="EOY24361.1" /db_xref="TAIR:AT5G47590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SSG6" /translation="MAAPEVILCYTPHTEEGYYAKNNQFQNSGPKGFIEFKVLENQDL YVRVDLPGVASNGVSCFTDPQKKVVFFSGEAPKDSEHEQGSRTYFGITGLICNCCEIS RVNATMKDGVLRMVLSKVKKTQGDAACSAERSSVPSTILQEAASRSAAGPQGGTGPVI ELNPFVVRGHRGAFEGKASKKGGLFARVDMPGVSPEDANAFFKDGEIRFIGTGYKVSE HDESGRTYLGSIVPVLPTKRIMPSKLDYTMKDGVLRIIIPPI" CDS join(30663780..30663825,30663956..30664324, 30664421..30664435,30664593..30664610,30665034..30665356) /locus_tag="TCM_015984" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29916.m000538" /codon_start=1 /product="Heat shock protein HSP20/alpha crystallin family, putative isoform 2" /protein_id="EOY24362.1" /db_xref="TAIR:AT5G47590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SSG6" /translation="MAAPEVILCYTPHTEEGYYAKNNQFQNSGPKGFIEFKVLENQDL YVRVDLPGVASNGVSCFTDPQKKVVFFSGEAPKDSEHEQGSRTYFGITGLICNCCEIS RVNATMKDGVLRMVLSKVKKTQGDAACSAERSSVPSTILQEAASRSAGGTGPVIELNP FVVRGHRGAFEGKASKKGGLFARVDMPGVSPEDANAFFKDGEIRFIGTGYKVSEHDES GRTYLGSIVPVLPTKRIMPSKLDYTMKDGVLRIIIPPI" gene complement(30665721..30667669) /locus_tag="TCM_015985" /note="dbxref CacaoGD:Thecc1EG015985" mRNA complement(join(30665721..30666613,30666838..30666934, 30667361..30667669)) /locus_tag="TCM_015985" /product="Heavy metal transport/detoxification superfamily protein, putative" /inference="similar to AA sequence:Phytozome:POPTR_0003s10990.1" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(join(30666426..30666613,30666838..30666934, 30667361..30667417)) /locus_tag="TCM_015985" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein, putative" /protein_id="EOY24363.1" /db_xref="Phytozome:POPTR_0003s10990.1" /translation="MVASNKHSLLHYEDLTLPSFQVIVMTANMGCAQCRKKVSQVISK MTGRNFDGLREYTVDVSNKQVIVKADFGFRWNVKDHLSKSEKRKDWRSLQLFKSCFGP ICYSSKQVVAD" gene complement(30668759..30673959) /locus_tag="TCM_015986" /note="dbxref CacaoGD:Thecc1EG015986" mRNA complement(join(30668759..30669772,30670134..30670193, 30670697..30670831,30670912..30670971,30671088..30671200, 30671309..30671384,30671503..30671607,30671858..30671919, 30672036..30672096,30672289..30672431,30672529..30672594, 30672698..30672810,30673017..30673070,30673268..30673307, 30673398..30673449,30673557..30673743,30673840..30673959)) /locus_tag="TCM_015986" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g04570.1" /inference="similar to AA sequence:Phytozome:GSVIVT01001312001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc192t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc192t10" mRNA complement(join(30668759..30669861,30670134..30670831, 30670912..30670971,30671088..30671200,30671309..30671384, 30671503..30671607,30671858..30671919,30672036..30672096, 30672289..30672431,30672529..30672594,30672698..30672810, 30673017..30673070,30673268..30673307,30673398..30673449, 30673557..30673743,30673840..30673959)) /locus_tag="TCM_015986" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g04570.1" /inference="similar to AA sequence:Phytozome:GSVIVT01001312001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc192t9; alternateUTRof:Thecc1EG015986t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc192t10" mRNA complement(join(30668759..30669772,30670134..30670831, 30670912..30670971,30671088..30671200,30671309..30671384, 30671503..30671607,30671858..30671919,30672036..30672096, 30672289..30672431,30672529..30672594,30672698..30672810, 30673017..30673070,30673268..30673307,30673398..30673449, 30673557..30673959)) /locus_tag="TCM_015986" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g04570.1" /inference="similar to AA sequence:Phytozome:GSVIVT01001312001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc192t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc192t10" gene complement(30668904..30670269) /locus_tag="TCM_015987" /note="dbxref CacaoGD:Thecc1EG015987" mRNA complement(join(30668904..30669849,30670134..30670269)) /locus_tag="TCM_015987" /product="Family of Uncharacterized protein function isoform 1" /inference="alignment:exonerate- protein:2:ricco:29916.m000540" /inference="similar to AA sequence:ricco:29916.m000540" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02595t00001; alternateUTRof:Thecc1EG015987t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9861t1" mRNA complement(join(30668949..30669773,30670135..30670256)) /locus_tag="TCM_015987" /product="Family of Uncharacterized protein function isoform 1" /inference="alignment:exonerate- protein:2:ricco:29916.m000540" /inference="similar to AA sequence:ricco:29916.m000540" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9861t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9861t1" CDS complement(30669060..30669749) /locus_tag="TCM_015987" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29916.m000540" /codon_start=1 /product="Family of Uncharacterized protein function isoform 1" /protein_id="EOY24369.1" /db_xref="TAIR:AT4G16530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3S2" /translation="MGGHGGLNILPQKRWNVYNFENREKVRKDEEAAAKEEQLKREQA RKRDAEFRLEQLRAARGLAPLIKAGGAEPASEPVEVVESESKSGHINLFEGIKIFDPI KGLEKEGAAEKDGFKRKKLKKEEVAPKPVAPEDEKYRLGYGVAGKGVKLPWYLERRNV DVKEESENDRSERAQKDEGRKTGKKTIEELREERLKRERREKERERALFIEKSKTDRS RTLKDRRFSRR" CDS complement(30669060..30669749) /locus_tag="TCM_015987" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29916.m000540" /codon_start=1 /product="Family of Uncharacterized protein function isoform 1" /protein_id="EOY24370.1" /db_xref="TAIR:AT4G16530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3S2" /translation="MGGHGGLNILPQKRWNVYNFENREKVRKDEEAAAKEEQLKREQA RKRDAEFRLEQLRAARGLAPLIKAGGAEPASEPVEVVESESKSGHINLFEGIKIFDPI KGLEKEGAAEKDGFKRKKLKKEEVAPKPVAPEDEKYRLGYGVAGKGVKLPWYLERRNV DVKEESENDRSERAQKDEGRKTGKKTIEELREERLKRERREKERERALFIEKSKTDRS RTLKDRRFSRR" mRNA complement(join(30669749..30669849,30670134..30670831, 30670912..30670971,30671088..30671200,30671309..30671384, 30671503..30671607,30671858..30671919,30672036..30672096, 30672289..30672431,30672529..30672594,30672698..30672810, 30673017..30673070,30673268..30673307,30673398..30673449, 30673557..30673743,30673840..30673959)) /locus_tag="TCM_015986" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g04570.1" /inference="similar to AA sequence:Phytozome:GSVIVT01001312001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc192t3; alternateUTRof:Thecc1EG015986t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc192t10" mRNA complement(join(30669749..30670831,30670912..30670971, 30671088..30671200,30671309..30671384,30671503..30671607, 30671858..30671919,30672036..30672096,30672289..30672431, 30672529..30672594,30672698..30672810,30673017..30673070, 30673268..30673307,30673398..30673449,30673557..30673743, 30673840..30673959)) /locus_tag="TCM_015986" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g04570.1" /inference="similar to AA sequence:Phytozome:GSVIVT01001312001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc192t7; alternateUTRof:Thecc1EG015986t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc192t10" CDS complement(join(30670726..30670831,30670912..30670971, 30671088..30671200,30671309..30671384,30671503..30671607, 30671858..30671919,30672036..30672096,30672289..30672431, 30672529..30672594,30672698..30672810,30673017..30673070, 30673268..30673307,30673398..30673449,30673557..30673743, 30673840..30673927)) /locus_tag="TCM_015986" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY24364.1" /db_xref="Phytozome:GSVIVT01001312001" /translation="MGTRSNFYKNPSLSYKKDLSLSSALQNLKAYNIATGDAPPSVEL EAYPPVDDKIACKKRSRERKPFSMPDRRREIEENDGPMSHQDYILKRRREVSSSHGYE ELSVDILQASSSSVNLVDYGSDGNASSECKESQDPPDSGHVNEVDQVKSRSEQRFSLP GEPICVVCGRYGEYICDKTDDDICSMECKSDLLQSLQITEKSLSNQNSLLSSSEPTSI SLLPELAEDTWDYNNHRWSKKSSSLCTYKCWKCQRPGHLAEDCLVTTTEQVTMRQSKL TSISRDLLELYRRCHQIGKNLSSASCNACRSSIALATCLDCSTVLCDNAGHLNEHIQT HPSHQQYYSHKLKRLVKCCKSTCKVTNFRDLLVCHYCFDKAFDKFYDMYTATWKGAGL SIIWGSICCDDHFTWHRMNCLNADVEDRAYIMSRDTERETHVQLSDFIF" CDS complement(join(30670726..30670831,30670912..30670971, 30671088..30671200,30671309..30671384,30671503..30671607, 30671858..30671919,30672036..30672096,30672289..30672431, 30672529..30672594,30672698..30672810,30673017..30673070, 30673268..30673307,30673398..30673449,30673557..30673743, 30673840..30673927)) /locus_tag="TCM_015986" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY24365.1" /db_xref="Phytozome:GSVIVT01001312001" /translation="MGTRSNFYKNPSLSYKKDLSLSSALQNLKAYNIATGDAPPSVEL EAYPPVDDKIACKKRSRERKPFSMPDRRREIEENDGPMSHQDYILKRRREVSSSHGYE ELSVDILQASSSSVNLVDYGSDGNASSECKESQDPPDSGHVNEVDQVKSRSEQRFSLP GEPICVVCGRYGEYICDKTDDDICSMECKSDLLQSLQITEKSLSNQNSLLSSSEPTSI SLLPELAEDTWDYNNHRWSKKSSSLCTYKCWKCQRPGHLAEDCLVTTTEQVTMRQSKL TSISRDLLELYRRCHQIGKNLSSASCNACRSSIALATCLDCSTVLCDNAGHLNEHIQT HPSHQQYYSHKLKRLVKCCKSTCKVTNFRDLLVCHYCFDKAFDKFYDMYTATWKGAGL SIIWGSICCDDHFTWHRMNCLNADVEDRAYIMSRDTERETHVQLSDFIF" CDS complement(join(30670726..30670831,30670912..30670971, 30671088..30671200,30671309..30671384,30671503..30671607, 30671858..30671919,30672036..30672096,30672289..30672431, 30672529..30672594,30672698..30672810,30673017..30673070, 30673268..30673307,30673398..30673449,30673557..30673743, 30673840..30673927)) /locus_tag="TCM_015986" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY24366.1" /db_xref="Phytozome:GSVIVT01001312001" /translation="MGTRSNFYKNPSLSYKKDLSLSSALQNLKAYNIATGDAPPSVEL EAYPPVDDKIACKKRSRERKPFSMPDRRREIEENDGPMSHQDYILKRRREVSSSHGYE ELSVDILQASSSSVNLVDYGSDGNASSECKESQDPPDSGHVNEVDQVKSRSEQRFSLP GEPICVVCGRYGEYICDKTDDDICSMECKSDLLQSLQITEKSLSNQNSLLSSSEPTSI SLLPELAEDTWDYNNHRWSKKSSSLCTYKCWKCQRPGHLAEDCLVTTTEQVTMRQSKL TSISRDLLELYRRCHQIGKNLSSASCNACRSSIALATCLDCSTVLCDNAGHLNEHIQT HPSHQQYYSHKLKRLVKCCKSTCKVTNFRDLLVCHYCFDKAFDKFYDMYTATWKGAGL SIIWGSICCDDHFTWHRMNCLNADVEDRAYIMSRDTERETHVQLSDFIF" CDS complement(join(30670726..30670831,30670912..30670971, 30671088..30671200,30671309..30671384,30671503..30671607, 30671858..30671919,30672036..30672096,30672289..30672431, 30672529..30672594,30672698..30672810,30673017..30673070, 30673268..30673307,30673398..30673449,30673557..30673743, 30673840..30673927)) /locus_tag="TCM_015986" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY24368.1" /db_xref="Phytozome:GSVIVT01001312001" /translation="MGTRSNFYKNPSLSYKKDLSLSSALQNLKAYNIATGDAPPSVEL EAYPPVDDKIACKKRSRERKPFSMPDRRREIEENDGPMSHQDYILKRRREVSSSHGYE ELSVDILQASSSSVNLVDYGSDGNASSECKESQDPPDSGHVNEVDQVKSRSEQRFSLP GEPICVVCGRYGEYICDKTDDDICSMECKSDLLQSLQITEKSLSNQNSLLSSSEPTSI SLLPELAEDTWDYNNHRWSKKSSSLCTYKCWKCQRPGHLAEDCLVTTTEQVTMRQSKL TSISRDLLELYRRCHQIGKNLSSASCNACRSSIALATCLDCSTVLCDNAGHLNEHIQT HPSHQQYYSHKLKRLVKCCKSTCKVTNFRDLLVCHYCFDKAFDKFYDMYTATWKGAGL SIIWGSICCDDHFTWHRMNCLNADVEDRAYIMSRDTERETHVQLSDFIF" CDS complement(join(30670726..30670831,30670912..30670971, 30671088..30671200,30671309..30671384,30671503..30671607, 30671858..30671919,30672036..30672096,30672289..30672431, 30672529..30672594,30672698..30672810,30673017..30673070, 30673268..30673307,30673398..30673449,30673557..30673927)) /locus_tag="TCM_015986" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 4" /protein_id="EOY24367.1" /db_xref="Phytozome:GSVIVT01001312001" /translation="MGTRSNFYKNPSLSYKKDLSLSSALQNLKGKIFSSSLFCSLVFF RTKKVKEIHEFSFLQFAAYNIATGDAPPSVELEAYPPVDDKIACKKRSRERKPFSMPD RRREIEENDGPMSHQDYILKRRREVSSSHGYEELSVDILQASSSSVNLVDYGSDGNAS SECKESQDPPDSGHVNEVDQVKSRSEQRFSLPGEPICVVCGRYGEYICDKTDDDICSM ECKSDLLQSLQITEKSLSNQNSLLSSSEPTSISLLPELAEDTWDYNNHRWSKKSSSLC TYKCWKCQRPGHLAEDCLVTTTEQVTMRQSKLTSISRDLLELYRRCHQIGKNLSSASC NACRSSIALATCLDCSTVLCDNAGHLNEHIQTHPSHQQYYSHKLKRLVKCCKSTCKVT NFRDLLVCHYCFDKAFDKFYDMYTATWKGAGLSIIWGSICCDDHFTWHRMNCLNADVE DRAYIMSRDTERETHVQLSDFIF" mobile_element 30674403..30675204 /note="source:CACAO_MITE66_scaffold_4 2 816" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(30675110..30675215) /note="source:CACAO_Mariner_E11_scaffold_1 992 1094" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(30675205..30675343) /note="source:scaffold_7_CACTA_0795 2862 3005" /mobile_element_type="transposon:TIR/CACTA" gene 30676448..30679592 /locus_tag="TCM_015988" /note="dbxref CacaoGD:Thecc1EG015988" mRNA 30676448..30679592 /locus_tag="TCM_015988" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00520.1" /inference="similar to AA sequence:ricco:29916.m000542" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4316t1" CDS 30677035..30679305 /locus_tag="TCM_015988" /note="dbxref ricco:29916.m000542" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24371.1" /db_xref="TAIR:AT5G47580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVG2" /translation="MGKLGCSIDGVLNEAKFSEPLPWIGIYIAAASLACAIAMAADAI HGFRHWKLWFPCKCFTINATSLTIITVAIKLSVDLNTAMPRGEDQLAKLSSTALICTV MGNSMPSLGTMENKEIFTNIIALGILVITVLVNICIQLGTGVIYVFVMEHAIIMFLML VLLVVLSFSALTVPTIKHYLELKYKKKYEMALKECSKSNETDKTIVEKLKEDLMRYWM MAHTCSPQFVVGRSVTCTASGALCLLSAATLAEAMLRFYLMPGSFRFCKGESDYKWSI KLILLTQAVAVGVGTIAPAMRWFLAINFRCPTRGGKWACRKSYKLEEYWIKRLVEMKE CPLNIPISNPHSRRIVHDAKIKFLNLCIGIQAGIVFMSKTIRLISICSMSVILLCYDH CRDWLMKFTPTNSITNDSGSESLFCSKLDLSRFVLHLEDEDSLVGVMMKDNRDATDYW RQRAKTRQPKHLIELLQQSRPSEGFKGLTEFDSFKVPSLNAEEAPNCWSLSVVTLTSI AVALPNINRSSIKLLMAGVNEGLVYVRHIEDDLDMQGNLVRIRKAADVVWLGVELYHR WRDVDLRKPSLQGKSPMEILKVLSDSAKNIFMEFKKSKVKCLMDSPSKWPIKVLAANS MYRISQSILLNYESRNYQMGERLFEAITVMISDILAACLTNLERFISIKCSTSSIEER EESVRHAVYVLGKTENILKLLHQKALPGLNPDQMAFMDEWRSLHKLNSSLPDTPFSQE SDSASRAGSEVYLAID" gene 30679612..30679980 /locus_tag="TCM_015989" /note="dbxref CacaoGD:Thecc1EG015989" mRNA 30679612..30679980 /locus_tag="TCM_015989" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene07696" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3170t1" CDS 30679733..30679912 /locus_tag="TCM_015989" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24372.1" /translation="MRPGKQKQAMWINHHRLSPWAFCTFLHSAWLSAFRYLQEFSYLG RCSFEPSRPPALCRS" gene 30684334..30685784 /locus_tag="TCM_015990" /note="dbxref CacaoGD:Thecc1EG015990" mRNA 30684334..30685784 /locus_tag="TCM_015990" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.30 coverage" CDS 30684802..30685140 /locus_tag="TCM_015990" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24373.1" /translation="MQNQIITLFVFFCFSHQHIHILMLPPSTIRTRGMILSRISDEKD LRNLKSFSSYCAPYMNAAVTITSSQNFCFFFFSSLKENQDFLMGLSCGLPRYLWDLLL ANYDYNLSYW" mobile_element 30685784..30686162 /note="source:MITE_PIF_Tourist_1 1 425" /mobile_element_type="transposon:TIR/MITE" gene complement(30688582..30699892) /locus_tag="TCM_015991" /note="dbxref CacaoGD:Thecc1EG015991" mRNA complement(join(30688582..30691532,30691893..30692470, 30697255..30697436,30699432..30699892)) /locus_tag="TCM_015991" /product="GRAS family transcription factor" /inference="alignment:exonerate-protein:2:frave:gene31749" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005571t1" /inference="similar to AA sequence:ricco:29916.m000544" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage" CDS complement(30688965..30691352) /locus_tag="TCM_015991" /note="dbxref ricco:29916.m000544; paralog of Thecc1EG005571t1" /codon_start=1 /product="GRAS family transcription factor" /protein_id="EOY24374.1" /db_xref="TAIR:AT4G00150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVG4" /translation="MHFQLQAKGAVELAGFASICQQDKWIKQQEANSFSFANSFYYNN EQEPTSVLHMRRSQSPPTSASTLSSSFNGGAAGAGGGGNSTDNTTTTAATIAPPETSL PNNNKEEWATELQPIPSELDLVPGPGGGQRCNLGLEDWETMLSESAVSPSQDHSFLGW ITGDVNDPSFGLKQLLQSGSTGPNPGLDFEGNAGLGVVDQGPGFDPIGSLNSSGPGNV ISSAAPNLGGFPGSGFLPNTSNNGNGKIGSVMPSSSSVGVVNNHKVLGASVGLNTNIQ NPVFTSPANNIGLPVSLPMLYQQQQQGQYVESQEEKPQILNAQVLMVQQQHPQNPNFF LPLPQEHHLLQPLPKRLNPGNLELSSQIPKLQFSDAGHELFMRKQQQQHMGFPHGVQF VPQQKPLMVAKQKVLGPGEEMAQQQQQHQYQLHQQQQTTLFDLLYQAAELVGTGNFLH AQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLIMNNPVSPPPLRSPTPFDVIFKMG AYKVFSEVSPLIQFVNFTCNQALLEALDDADRIHIVDFDIGFGAQWASFMQELPMRSR GAPSLRITAFASPSTHHPIELGLMRENLMQFANEIGVNFELEVLNFDCLDQTPYSLPM FRSNENEAVAVNFPVWSSSNQPSALPNLLRFVKQLSPKIMVSLDRGGDRNDLPFPQHI IHAFQSYINLFESLDAVNVTSDAVNKIEKFLFVPRIESTVLGRLHAPEKMPLWRTLFS SAGFSPVTFSNFTETQAECVVKRAQVRGFRVEKRQASLVLCWLQGDLISVSAWRC" mobile_element complement(30693441..30694595) /note="source:CACAO_PIF_E144_scaffold_10 1203 2391" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 30702999..30704923 /locus_tag="TCM_015992" /note="dbxref CacaoGD:Thecc1EG015992" mRNA join(30702999..30703035,30703443..30703484, 30703660..30703715,30703890..30703942,30704421..30704539, 30704632..30704923) /locus_tag="TCM_015992" /product="Ubiquitin-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400008510" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005569t4" /inference="similar to AA sequence:frave:gene31756" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9859t1" CDS join(30703448..30703484,30703660..30703715, 30703890..30703942,30704421..30704539,30704632..30704735) /locus_tag="TCM_015992" /note="dbxref frave:gene31756; paralog of Thecc1EG005569t4" /codon_start=1 /product="Ubiquitin-like superfamily protein" /protein_id="EOY24375.1" /db_xref="TAIR:AT4G16520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S927" /translation="MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVERAERSDIPN IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE DGFLYVTYSGENTFGHLMSQ" gene complement(30705813..30708559) /locus_tag="TCM_015993" /note="dbxref CacaoGD:Thecc1EG015993" mRNA complement(join(30705813..30706393,30708036..30708559)) /locus_tag="TCM_015993" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(30705954..30706301) /locus_tag="TCM_015993" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24376.1" /translation="MEGGRSQVVSGQSCMAKPPLASPLEGTGRVDFPPPTPVMDHACH VAFTPCAIHIAYAATSVAGPFHPVGSLLSERLCPWSLWSNFRLIASTEHLGSLHGARN MVLNNPQRCGHIL" mobile_element 30707030..30707110 /note="source:scaffold_4_CACTA_0511 5719 5799" /mobile_element_type="transposon:TIR/CACTA" gene complement(30710782..30715009) /locus_tag="TCM_015994" /note="dbxref CacaoGD:Thecc1EG015994" mRNA complement(join(30710782..30711008,30711108..30711478, 30712582..30712670,30713101..30713185,30713275..30713352, 30714596..30714958)) /locus_tag="TCM_015994" /product="YbaK/aminoacyl-tRNA synthetase-associated domain isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001305001" /inference="similar to AA sequence:Phytozome:POPTR_0003s11040.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00237t00001; inference alignment:Newbler:10:TSA:cgbaB_g00237t00001" mRNA complement(join(30710971..30711478,30712578..30712670, 30713101..30713185,30713275..30713352,30714596..30715009)) /locus_tag="TCM_015994" /product="YbaK/aminoacyl-tRNA synthetase-associated domain isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001305001" /inference="similar to AA sequence:Phytozome:Glyma05g04530.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9801t1; inference alignment:Newbler:10:TSA:cgbaB_g00237t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1042t3" CDS complement(join(30711335..30711478,30712582..30712670, 30713101..30713185,30713275..30713352,30714596..30714892)) /locus_tag="TCM_015994" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="YbaK/aminoacyl-tRNA synthetase-associated domain isoform 1" /protein_id="EOY24377.1" /db_xref="Phytozome:POPTR_0003s11040.1" /db_xref="TAIR:AT4G16510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6H6L7" /translation="MEAALAALAELERVQTQILERISKLELSHLPQNAEPLPSSSPLT NDDVEARLSNILRSNGVNDFFFKRVSSDYYDWSLESRRDVLGAASVHHLCKSIVLVNT QAPSNVIDCSDRNNSKYYVVVVQYTARFNAETVKNFLYALNSGKISKKKFNLRLTPEE TSIKLTGYEHNAVTCIGMQTDIPVILDEAIVKLSPDFFWLGGGEVDLKLGIRTSEFIS FVKPFIVNCSGT" CDS complement(join(30711465..30711478,30712578..30712670, 30713101..30713185,30713275..30713352,30714596..30714892)) /locus_tag="TCM_015994" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="YbaK/aminoacyl-tRNA synthetase-associated domain isoform 2" /protein_id="EOY24378.1" /db_xref="Phytozome:Glyma05g04530.1" /db_xref="TAIR:AT4G16510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6H6L7" /translation="MEAALAALAELERVQTQILERISKLELSHLPQNAEPLPSSSPLT NDDVEARLSNILRSNGVNDFFFKRVSSDYYDWSLESRRDVLGAASVHHLCKSIVLVNT QAPSNVIDCSDRNNSKYYVVVVQYTARFNAETVKNFLYALNSGKISKKKFNLRLTPEE TSIKLTGYEHNAVTCIGMQTDIPVSNFG" gene 30718438..30720542 /locus_tag="TCM_015995" /note="dbxref CacaoGD:Thecc1EG015995" mRNA join(30718438..30719102,30719548..30720542) /locus_tag="TCM_015995" /product="Lactate/malate dehydrogenase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001303001" /inference="similar to AA sequence:Phytozome:GSVIVT01001303001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03645t00001" CDS join(30718494..30719102,30719548..30719991) /locus_tag="TCM_015995" /codon_start=1 /product="Lactate/malate dehydrogenase family protein" /protein_id="EOY24379.1" /db_xref="Phytozome:GSVIVT01001303001" /db_xref="TAIR:AT4G17260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P22989" /translation="MQKSASASSLGPGGLDLTQAFFKPIQNTAPPSPTKRHTKISVIG VGNVGMAIAQTILTQDLADELSLVDAKADKLRGEMLDLQHAAAFLPRTKINASVDYSV TAGSDLCIVTAGARQNPGESRLNLLRRNVALFSSIIPPLAKYAPDSILLIVSNPVDLL TYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALW SSISVGGVPVLSFLKNQQIAYEKETLENIHKAVIGSAYEVISLKGYTSWAIGYSVASL ARSLLRDQRKIHPVSVLAKGFYGINAGDVFLSLPAQLGRGGVLGVTNIHLTDEEVQRL RKSAKTILEYQSQLGL" gene complement(30720293..30721775) /locus_tag="TCM_015996" /note="dbxref CacaoGD:Thecc1EG015996" mRNA complement(join(30720293..30720860,30721293..30721775)) /locus_tag="TCM_015996" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(join(30720538..30720860,30721293..30721623)) /locus_tag="TCM_015996" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24380.1" /translation="MESYMGIGRPPDEIDQGNYGQEITRYNEPLKLENSEKQPMKPNH HLRKPRLTFKCLVIGCYSWLILYKLYIDKLENKLITDDVIKISSTVSVGFLSFMWELS QTYVIAGIGFTNNCSSSHPQPALFVNGQRSTQMPKGYLTLNLWANVLGDFLKLGVGKP HSPCCSLIKGLVDVELDACLCTVVKANILGLVNVEAPIQLGLPIDFCGMNHRDYNCQ" gene 30722835..30723465 /locus_tag="TCM_015997" /note="dbxref CacaoGD:Thecc1EG015997" mRNA 30722835..30723465 /locus_tag="TCM_015997" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015996t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 30722923..30723264 /locus_tag="TCM_015997" /note="paralog of Thecc1EG015996t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24381.1" /translation="MASKALPTIAFLLSLNLLLLSMANANINQPKCEKNGLTLNVCAN VLENFLSVRVGNPRSPCCSLIKGLVDLEADVCLCTLLDANILGLIDLRAAVQLNLLLD FCGMDRRAYHC" mobile_element complement(30724780..30725076) /note="source:MITE_CACTA_25 2 315" /mobile_element_type="transposon:TIR/MITE" mobile_element 30725175..30725509 /note="source:CACAO_on_E459_scaffold_2 119 428" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30725225..30726310 /note="source:INTACT1330F_F382_scaffold_8-int 13 1091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30726411..30726918 /note="source:INTACT1330F_F382_scaffold_8-int 1766 2274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30727375..30727710 /note="source:INTACT687_F13_scaffold_3-int 1297 1646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30727890..30728982) /note="source:INTACT639F_F363_scaffold_5-int 7461 8583" /mobile_element_type="retrotransposon:LTR/Copia" gene 30728972..30731349 /locus_tag="TCM_015998" /note="dbxref CacaoGD:Thecc1EG015998" mRNA join(30728972..30729203,30729371..30729422, 30730204..30731349) /locus_tag="TCM_015998" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 30731052..30731324 /locus_tag="TCM_015998" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24382.1" /translation="MSGLASPVGFWGSRFLFCLQLCVVLVCGLEFYSLGLFVVLLPVF LSAGLSLSNCTGSSPPKLEFYVTKVFDHQRPRLWFGILALLLIFNS" mobile_element 30732271..30732579 /note="source:scaffold_7_CACTA_0789 1861 2165" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30733824..30734163 /note="source:scaffold_10_CACTA_0130 6245 6574" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30734180..30735239 /note="source:scaffold_10_CACTA_0130 8380 9469" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30735238..30735673) /note="source:scaffold_2_CACTA_0248 49 500" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30735806..30736775) /note="source:INTACT89_F140_scaffold_9-int 924 1882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30735936..30736776 /note="source:INTACT36_F116_scaffold_6-int 3296 4150" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 30735944..30737569 /note="source:CACAO_M_E70014_F74_scaffold_10 7804 9370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30737559..30737704 /note="source:scaffold_10_CACTA_0130 7720 7865" /mobile_element_type="transposon:TIR/CACTA" gene 30737671..30739956 /locus_tag="TCM_015999" /note="dbxref CacaoGD:Thecc1EG015999" mRNA join(30737671..30737731,30737913..30738121, 30738589..30738835,30739430..30739956) /locus_tag="TCM_015999" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400048750.2" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS join(30737674..30737731,30737913..30738121, 30738589..30738835,30739430..30739665) /locus_tag="TCM_015999" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24383.1" /translation="MDEAHLKKELLTKRPRLMRRQVAGGGGGGAPIDGGAAIGERKGG GGPTLVTIVKKRRLRERRKRNGAEAFEAISRRRIPKFAGVLVVYMALVTKALFLSLNL LFFALVSCQHYVSKKNPFAEDGDFNSHNSRDPIPIRQESGKHSAEDGERNSHESSDSN NSSNLRESMEDGVYLNVLNCLVDAKLGKPPKEPCCSLIEGLVDLEAALCLLHCHQSQC LGHCRPGRSGFFELDSQLLWKGGSFDFQCPA" gene 30740284..30742728 /locus_tag="TCM_016000" /note="dbxref CacaoGD:Thecc1EG016000" mRNA join(30740284..30740515,30740625..30740711, 30740858..30740953,30742346..30742402,30742486..30742728) /locus_tag="TCM_016000" /product="NADH dehydrogenase 1 beta subcomplex subunit 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00430.1" /inference="similar to AA sequence:Phytozome:Glyma05g04510.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9969t1" CDS join(30740378..30740515,30740625..30740711, 30740858..30740953,30742346..30742402) /locus_tag="TCM_016000" /codon_start=1 /product="NADH dehydrogenase 1 beta subcomplex subunit 8" /protein_id="EOY24384.1" /db_xref="Phytozome:Glyma05g04510.2" /db_xref="TAIR:AT5G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3R4" /translation="MAGRLSNVASRIMGGNGIVSRSVASSLRLRSGMGLPVGKHIVPD KPLPVNDELIWDNGTSFPEPCIDRIADTVGKYEALAWMCGGLSFFASLGLLAWWNDKA SKIPFTPKVYPYDNLRVELGGEP" gene 30745941..30746548 /locus_tag="TCM_016001" /note="dbxref CacaoGD:Thecc1EG016001" mRNA 30745941..30746548 /locus_tag="TCM_016001" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g04460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005564t1" /inference="similar to AA sequence:ricco:28603.m000167" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g16238t00001" CDS 30746023..30746427 /locus_tag="TCM_016001" /note="dbxref ricco:28603.m000167; paralog of Thecc1EG005564t1" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /protein_id="EOY24385.1" /db_xref="TAIR:AT2G45180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P14009" /translation="MASKTIASTALLLSLNILFFTLVSSTYVPCPPTPKSPEPPHKTP PSPKPASCPKDTLKLGVCADLLNLMHAVVGNPAKTPCCSLLAGLADAEATVCLCTTIK ASVLGANLNIPVSLSLLLNYCGKNIPAGYQCA" mobile_element complement(30746847..30746998) /note="source:INTACT1817F_F27_scaffold_11-int 6910 7061" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30750501..30751206) /note="source:CACAO_hAT_E2538_scaffold_5 2 718" /mobile_element_type="transposon:TIR/hAT" gene 30754893..30755996 /locus_tag="TCM_016002" /note="dbxref CacaoGD:Thecc1EG016002" mRNA 30754893..30755996 /locus_tag="TCM_016002" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11060.1" /inference="similar to AA sequence:Phytozome:GSVIVT01001298001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02527t00001" CDS 30754928..30755647 /locus_tag="TCM_016002" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /protein_id="EOY24386.1" /db_xref="Phytozome:GSVIVT01001298001" /translation="MGSQFTALIFIFLIFMLISLPPIYACVPCTQPHPPPYHSPTRPT HPKVPRPIPPSTKHPPHRGGSPKVEPPSKKPPMPPVIVPPIIITPPITNPPVISPPIT NPPVTIPPPSSPYPPYSGGPPSGGGGGGGGGGGGGGGGGGGSSPAPPTTQPTCPVNAL KLGLCVDVLGGLVHIGLGNPVENACCPVLGGLLELEAAVCLCTAIRLKLLNLTIFIPL ALQALITCGKNPPPGFVCPPL" mobile_element complement(30758484..30758865) /note="source:MITE_PIF_Tourist_7 19 404" /mobile_element_type="transposon:TIR/MITE" gene complement(30758762..30759876) /locus_tag="TCM_016003" /note="dbxref CacaoGD:Thecc1EG016003" mRNA complement(30758762..30759876) /locus_tag="TCM_016003" /product="14 kDa proline-rich protein DC2.15, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s15850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005564t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15850.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc68t5" mobile_element 30758774..30758890 /note="source:CACAO_MITE_S202_scaffold_8 480 597" /mobile_element_type="transposon:TIR/MITE" CDS complement(30759380..30759802) /locus_tag="TCM_016003" /note="paralog of Thecc1EG005564t1" /codon_start=1 /product="14 kDa proline-rich protein DC2.15, putative" /protein_id="EOY24387.1" /db_xref="Phytozome:POPTR_0001s15850.1" /db_xref="TAIR:AT4G12480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P14009" /translation="MASKRSASLALFFALNILFFSLVSACGSCPSPKPKPKPTPCSSP STPCPTPSGGGKCPRDALKLGICADLLGGLLNVTVGKPPVQPCCSLIQGLADLEAAVC LCTAIKANILGINLNIPVSLSLLLNVCSKNVPSGFQCS" gene 30764823..30765463 /locus_tag="TCM_016004" /note="dbxref CacaoGD:Thecc1EG016004" mRNA 30764823..30765463 /locus_tag="TCM_016004" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016003t1" /inference="similar to AA sequence:Phytozome:Glyma17g14840.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9875t1" CDS 30764875..30765273 /locus_tag="TCM_016004" /note="paralog of Thecc1EG016003t1" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /protein_id="EOY24388.1" /db_xref="Phytozome:Glyma17g14840.1" /db_xref="TAIR:AT1G12100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6SVW9" /translation="MDSKRCSSTILLLAINLLFFTLVSGCNTCVQPRPNPNPRPTPSP PTKSCPRDALKLGVCAKLLNGTIGGVVGNPPDTPCCSVLSGLVDLEAAVCLCTAIKAN VLGININIPISLSLLINTCGKQLPSDFICA" mobile_element complement(30770856..30770954) /note="source:INTACT433_F212_scaffold_1-int 3044 3138" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30773799..30773880) /note="source:CACAO_M_E57639_F345_scaffold_9 1398 1460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30773810..30773894 /note="source:CACAO_Again_on_E207_scaffold_9 1034 1118" /mobile_element_type="transposon:TIR/hAT" gene 30776067..30780469 /locus_tag="TCM_016005" /note="dbxref CacaoGD:Thecc1EG016005" mRNA join(30776067..30776445,30776562..30776604, 30776846..30777411,30779111..30780214) /locus_tag="TCM_016005" /product="Nitrate transporter 1.1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037019t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11080.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9873t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9873t4" mRNA join(30776071..30776445,30776565..30776604, 30776846..30777411,30779111..30780469) /locus_tag="TCM_016005" /product="Nitrate transporter 1.1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037019t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9873t4" CDS join(30776156..30776445,30776562..30776604, 30776846..30777411,30779111..30779966) /locus_tag="TCM_016005" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037019t1" /codon_start=1 /product="Nitrate transporter 1.1 isoform 2" /protein_id="EOY24390.1" /db_xref="Phytozome:POPTR_0003s11080.1" /db_xref="TAIR:AT1G12110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HPA0" /translation="MSFPVTQGKTLPDAWDYKGSPAERSKSGGWTSAAMILGVEACER LTTLGIAVNLVTYLTGTMHLGNATSATTVTNFLGTSFMLCLLGGFIADTFLGSRYLTI GIFATVQATGVTILTISTVIPSLRPPKCSMDNPTTCTQASGIQLIILYLALYLTALGT GGLKSSVSGFGSDQFDDSDPEERYQMTNFFNWFFFFINIGSLGSVTILVYIQDNLGRE WGYGICACAIVIGLVVFLSGTRRYRFKKLVGSPLTQIAAVFVAAWKKRHLELPSDPSL LFNIDDAAEGLKKKQKLPHSKQFRFLDRAAIQDSSAPEANKWNLATLTDVEEVKLVIR MLPIWATTIIFWTVYAQMTTFSVSQATTMDRHIGIFQIPPASLTVFFVASILVTVPIY DRLIAPIARKVLKNPQGLTPLQRIGVGLVLSIIAMIAAAMTEIKRLRVARSHGLTNDR AVEIPLSVFWLVPQFLFVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFF VSSLLVTIVHKVTGNKKPWLPDNLNQGRLYDFYWLLAILSSLNLAIYLVFAKWYVYKD KRLADEGIELEEAEPTFH" CDS join(30776156..30776445,30776565..30776604, 30776846..30777411,30779111..30779966) /locus_tag="TCM_016005" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037019t1" /codon_start=1 /product="Nitrate transporter 1.1 isoform 1" /protein_id="EOY24389.1" /db_xref="Phytozome:POPTR_0003s11080.1" /db_xref="TAIR:AT1G12110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HPA0" /translation="MSFPVTQGKTLPDAWDYKGSPAERSKSGGWTSAAMILGVEACER LTTLGIAVNLVTYLTGTMHLGNATSATTVTNFLGTSFMLCLLGGFIADTFLGRYLTIG IFATVQATGVTILTISTVIPSLRPPKCSMDNPTTCTQASGIQLIILYLALYLTALGTG GLKSSVSGFGSDQFDDSDPEERYQMTNFFNWFFFFINIGSLGSVTILVYIQDNLGREW GYGICACAIVIGLVVFLSGTRRYRFKKLVGSPLTQIAAVFVAAWKKRHLELPSDPSLL FNIDDAAEGLKKKQKLPHSKQFRFLDRAAIQDSSAPEANKWNLATLTDVEEVKLVIRM LPIWATTIIFWTVYAQMTTFSVSQATTMDRHIGIFQIPPASLTVFFVASILVTVPIYD RLIAPIARKVLKNPQGLTPLQRIGVGLVLSIIAMIAAAMTEIKRLRVARSHGLTNDRA VEIPLSVFWLVPQFLFVGAGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFV SSLLVTIVHKVTGNKKPWLPDNLNQGRLYDFYWLLAILSSLNLAIYLVFAKWYVYKDK RLADEGIELEEAEPTFH" mobile_element complement(30780929..30780972) /note="source:CACAO_M_E51939_F73_scaffold_7 2507 2550" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(30782597..30792820) /locus_tag="TCM_016006" /note="dbxref CacaoGD:Thecc1EG016006" mRNA complement(join(30782597..30782961,30783173..30783699, 30783981..30784172,30784431..30784544,30784657..30784887, 30785075..30785215,30785322..30785489,30786159..30786314, 30787043..30787488,30787894..30787990,30789797..30790156, 30791400..30791441,30791942..30792453,30792576..30792820)) /locus_tag="TCM_016006" /product="OSBP(oxysterol binding protein)-related protein 2A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035033t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s00390.4" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc619t13_C2" mRNA complement(join(30783273..30783699,30783981..30784172, 30784431..30784544,30784657..30784887,30785075..30785215, 30785322..30785489,30786159..30786314,30787043..30787488, 30787894..30787990,30789797..30790156,30791942..30792453, 30792576..30792644)) /locus_tag="TCM_016006" /product="OSBP(oxysterol binding protein)-related protein 2A isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035033t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s00390.4" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9883t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc619t13_C2" mRNA complement(join(30783273..30783699,30783981..30784172, 30784431..30784580,30784657..30784887,30785075..30785215, 30785322..30785489,30786159..30786314,30787043..30787488, 30787894..30787990,30789797..30790156,30791942..30792453, 30792576..30792644)) /locus_tag="TCM_016006" /product="OSBP(oxysterol binding protein)-related protein 2A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035033t3" /inference="similar to AA sequence:Phytozome:POPTR_0001s00390.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9883t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc619t13_C2" mRNA complement(join(30783276..30783699,30783981..30784172, 30784431..30784544,30784657..30784887,30785075..30785215, 30785322..30785489,30786159..30786314,30787043..30787488, 30787894..30787990,30789797..30790156,30790974..30791003, 30791944..30791971)) /locus_tag="TCM_016006" /product="OSBP(oxysterol binding protein)-related protein 2A isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035033t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s00390.4" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc619t14_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc619t13_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc637t9" mRNA complement(join(30783276..30783699,30783981..30784172, 30784431..30784550,30784657..30784887,30785075..30785215, 30785322..30785489,30786159..30786314,30787043..30787488, 30787894..30787990,30789797..30790156,30790974..30791003, 30791944..30791971)) /locus_tag="TCM_016006" /product="OSBP(oxysterol binding protein)-related protein 2A isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035033t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s00390.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc619t5_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc619t13_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc637t9" mRNA complement(join(30783276..30783699,30783981..30784172, 30784431..30784544,30784657..30784887,30785075..30785215, 30785322..30785489,30786159..30786314,30787043..30787488, 30787894..30787990,30789797..30790156,30790974..30791429)) /locus_tag="TCM_016006" /product="OSBP(oxysterol binding protein)-related protein 2A isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035033t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s00390.4" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc619t11_C2; alternateUTRof:Thecc1EG016006t5; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc619t13_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc637t9" CDS complement(join(30783993..30784172,30784431..30784544, 30784657..30784887,30785075..30785215,30785322..30785489, 30786159..30786314,30787043..30787488,30787894..30787990, 30789797..30790156,30791942..30792355)) /locus_tag="TCM_016006" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG035033t2" /codon_start=1 /product="OSBP(oxysterol binding protein)-related protein 2A isoform 4" /protein_id="EOY24394.1" /db_xref="Phytozome:POPTR_0001s00390.4" /db_xref="TAIR:AT4G22540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV10" /translation="MRVKEMHPLCCISLESPGIGDQSPEVSLTRARSMPAGSLSGSET GNASRLTTRGSEGTVAGILYKWTNYGKGWRSRWFLLRNGVLSYSKIRRPETLNLLSPT DDVRLIGDISTNRLSRMDSCSGRRKHQKTVGIIHLKISSFRESKSDDRRFYIFTATKT LHLRTDSKRDRIAWIQALVSTRSLFLLRPLNDNLSLVPHDLSISTDKLKKRLLEEGIS DNLVKDCEQIMLTEFSEIQGQLKVLCEERSNLLDTLRQLEAANIEAETSGIHDGDFQL TKHEYSGIGRGKYSECSTTESSDDIEKQELEEVSDEDETSFYDTKEYFTEPPVSCGSV RGAADHAENQKEAEKQFDNVEKMHADKEDCDSRYPQIERRKKLPDPIEKEKGVSLWSM IKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYKYGKEGNSLQRILNVA AFAVSGYASSEGRHCKPFNPLLGETYEADYPDKGVRFFSEKVSHHPTLIACHCEGKGW KFWGDSNLRTKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTSIYNLILGKVYCDHHG LMQICGNREYSCKLKFKEQSILDRNPRQVHGFVEDLSGKKVATLIGKWDDSMYYVSGD GSARPKDCNPSSNASLLWKRNKPPPNLTRYNLTSFAITLNELTPGLQEKLPPTDSRLR PDQRHLENGEYERANAEKQRLERRQRMSRKLQENGWNPRWFEREGENGSFRYVGGYWE AREQGKWDGCPNIFGEFNEELVDSTERP" CDS complement(join(30783993..30784172,30784431..30784544, 30784657..30784887,30785075..30785215,30785322..30785489, 30786159..30786314,30787043..30787488,30787894..30787990, 30789797..30790156,30791400..30791441,30791942..30792355)) /locus_tag="TCM_016006" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG035033t2" /codon_start=1 /product="OSBP(oxysterol binding protein)-related protein 2A isoform 1" /protein_id="EOY24391.1" /db_xref="Phytozome:POPTR_0001s00390.4" /db_xref="TAIR:AT4G22540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV10" /translation="MRVKEMHPLCCISLESPGIGDQSPEVSLTRARSMPAGSLSGSET GNASRLTTRGSEGTVAGILYKWTNYGKGWRSRWFLLRNGVLSYSKIRRPETLNLLSPT DDVRLIGDISTNRLSRMDSCSGRRKHQKTVGIIHLKSGSHQQVGLEGCNRISSFRESK SDDRRFYIFTATKTLHLRTDSKRDRIAWIQALVSTRSLFLLRPLNDNLSLVPHDLSIS TDKLKKRLLEEGISDNLVKDCEQIMLTEFSEIQGQLKVLCEERSNLLDTLRQLEAANI EAETSGIHDGDFQLTKHEYSGIGRGKYSECSTTESSDDIEKQELEEVSDEDETSFYDT KEYFTEPPVSCGSVRGAADHAENQKEAEKQFDNVEKMHADKEDCDSRYPQIERRKKLP DPIEKEKGVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYKY GKEGNSLQRILNVAAFAVSGYASSEGRHCKPFNPLLGETYEADYPDKGVRFFSEKVSH HPTLIACHCEGKGWKFWGDSNLRTKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTSI YNLILGKVYCDHHGLMQICGNREYSCKLKFKEQSILDRNPRQVHGFVEDLSGKKVATL IGKWDDSMYYVSGDGSARPKDCNPSSNASLLWKRNKPPPNLTRYNLTSFAITLNELTP GLQEKLPPTDSRLRPDQRHLENGEYERANAEKQRLERRQRMSRKLQENGWNPRWFERE GENGSFRYVGGYWEAREQGKWDGCPNIFGEFNEELVDSTERP" CDS complement(join(30783993..30784172,30784431..30784544, 30784657..30784887,30785075..30785215,30785322..30785489, 30786159..30786314,30787043..30787488,30787894..30787990, 30789797..30789886)) /locus_tag="TCM_016006" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG035033t2" /codon_start=1 /product="OSBP(oxysterol binding protein)-related protein 2A isoform 5" /protein_id="EOY24395.1" /db_xref="Phytozome:POPTR_0001s00390.4" /db_xref="TAIR:AT4G22540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV10" /translation="MLTEFSEIQGQLKVLCEERSNLLDTLRQLEAANIEAETSGIHDG DFQLTKHEYSGIGRGKYSECSTTESSDDIEKQELEEVSDEDETSFYDTKEYFTEPPVS CGSVRGAADHAENQKEAEKQFDNVEKMHADKEDCDSRYPQIERRKKLPDPIEKEKGVS LWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYKYGKEGNSLQRI LNVAAFAVSGYASSEGRHCKPFNPLLGETYEADYPDKGVRFFSEKVSHHPTLIACHCE GKGWKFWGDSNLRTKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTSIYNLILGKVYC DHHGLMQICGNREYSCKLKFKEQSILDRNPRQVHGFVEDLSGKKVATLIGKWDDSMYY VSGDGSARPKDCNPSSNASLLWKRNKPPPNLTRYNLTSFAITLNELTPGLQEKLPPTD SRLRPDQRHLENGEYERANAEKQRLERRQRMSRKLQENGWNPRWFEREGENGSFRYVG GYWEAREQGKWDGCPNIFGEFNEELVDSTERP" CDS complement(join(30783993..30784172,30784431..30784544, 30784657..30784887,30785075..30785215,30785322..30785489, 30786159..30786314,30787043..30787488,30787894..30787990, 30789797..30789886)) /locus_tag="TCM_016006" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG035033t2" /codon_start=1 /product="OSBP(oxysterol binding protein)-related protein 2A isoform 5" /protein_id="EOY24396.1" /db_xref="Phytozome:POPTR_0001s00390.4" /db_xref="TAIR:AT4G22540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV10" /translation="MLTEFSEIQGQLKVLCEERSNLLDTLRQLEAANIEAETSGIHDG DFQLTKHEYSGIGRGKYSECSTTESSDDIEKQELEEVSDEDETSFYDTKEYFTEPPVS CGSVRGAADHAENQKEAEKQFDNVEKMHADKEDCDSRYPQIERRKKLPDPIEKEKGVS LWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYKYGKEGNSLQRI LNVAAFAVSGYASSEGRHCKPFNPLLGETYEADYPDKGVRFFSEKVSHHPTLIACHCE GKGWKFWGDSNLRTKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTSIYNLILGKVYC DHHGLMQICGNREYSCKLKFKEQSILDRNPRQVHGFVEDLSGKKVATLIGKWDDSMYY VSGDGSARPKDCNPSSNASLLWKRNKPPPNLTRYNLTSFAITLNELTPGLQEKLPPTD SRLRPDQRHLENGEYERANAEKQRLERRQRMSRKLQENGWNPRWFEREGENGSFRYVG GYWEAREQGKWDGCPNIFGEFNEELVDSTERP" CDS complement(join(30783993..30784172,30784431..30784550, 30784657..30784887,30785075..30785215,30785322..30785489, 30786159..30786314,30787043..30787488,30787894..30787990, 30789797..30789886)) /locus_tag="TCM_016006" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG035033t2" /codon_start=1 /product="OSBP(oxysterol binding protein)-related protein 2A isoform 3" /protein_id="EOY24393.1" /db_xref="Phytozome:POPTR_0001s00390.1" /db_xref="TAIR:AT4G22540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV10" /translation="MLTEFSEIQGQLKVLCEERSNLLDTLRQLEAANIEAETSGIHDG DFQLTKHEYSGIGRGKYSECSTTESSDDIEKQELEEVSDEDETSFYDTKEYFTEPPVS CGSVRGAADHAENQKEAEKQFDNVEKMHADKEDCDSRYPQIERRKKLPDPIEKEKGVS LWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYKYGKEGNSLQRI LNVAAFAVSGYASSEGRHCKPFNPLLGETYEADYPDKGVRFFSEKVSHHPTLIACHCE GKGWKFWGDSNLRTKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTSIYNLILGKVYC DHHGLMQICGNREYSCKLKFKEQSILDRNPRQVHGFVEDLSGKKVATLIGKWDDSMYY VSGDGSARPKDCNPSSNASLLWKRNKPPPNLTRYNLTSFAITLNELTPGLQIKEKLPP TDSRLRPDQRHLENGEYERANAEKQRLERRQRMSRKLQENGWNPRWFEREGENGSFRY VGGYWEAREQGKWDGCPNIFGEFNEELVDSTERP" CDS complement(join(30784557..30784580,30784657..30784887, 30785075..30785215,30785322..30785489,30786159..30786314, 30787043..30787488,30787894..30787990,30789797..30790156, 30791942..30792355)) /locus_tag="TCM_016006" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG035033t3" /codon_start=1 /product="OSBP(oxysterol binding protein)-related protein 2A isoform 2" /protein_id="EOY24392.1" /db_xref="Phytozome:POPTR_0001s00390.2" /db_xref="TAIR:AT4G22540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV10" /translation="MRVKEMHPLCCISLESPGIGDQSPEVSLTRARSMPAGSLSGSET GNASRLTTRGSEGTVAGILYKWTNYGKGWRSRWFLLRNGVLSYSKIRRPETLNLLSPT DDVRLIGDISTNRLSRMDSCSGRRKHQKTVGIIHLKISSFRESKSDDRRFYIFTATKT LHLRTDSKRDRIAWIQALVSTRSLFLLRPLNDNLSLVPHDLSISTDKLKKRLLEEGIS DNLVKDCEQIMLTEFSEIQGQLKVLCEERSNLLDTLRQLEAANIEAETSGIHDGDFQL TKHEYSGIGRGKYSECSTTESSDDIEKQELEEVSDEDETSFYDTKEYFTEPPVSCGSV RGAADHAENQKEAEKQFDNVEKMHADKEDCDSRYPQIERRKKLPDPIEKEKGVSLWSM IKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYKYGKEGNSLQRILNVA AFAVSGYASSEGRHCKPFNPLLGETYEADYPDKGVRFFSEKVSHHPTLIACHCEGKGW KFWGDSNLRTKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTSIYNLILGKVYCDHHG LMQICGNREYSCKLKFKEQSILDRNPRQVHGFVEDLSGKKVATLIGKWDDSMYYVSGD GSARPKDCNPSSNASLLWKRNKPPPNLTRYNLTSFAITLNELTPGLQLCLIPGI" mobile_element 30795000..30795232 /note="source:CACAO_Mariner_E220_scaffold_9 8973 9240" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 30795037..30795579 /note="source:scaffold_9_CACTA_0946 17764 18212" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30797168..30797282 /note="source:CACAO_M_E34420_F305_scaffold_5 1452 1513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30797227..30797294) /note="source:scaffold_6_CACTA_0712 1383 1452" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30798132..30798354 /note="source:scaffold_5_CACTA_0580 11360 11609" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30800902..30801004 /note="source:INTACT289_F14_scaffold_4-int 1365 1435" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(30803284..30806160) /locus_tag="TCM_016007" /note="dbxref CacaoGD:Thecc1EG016007" mRNA complement(join(30803284..30803558,30804168..30804321, 30804508..30804763,30804890..30804942,30805112..30805245, 30806088..30806160)) /locus_tag="TCM_016007" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage" CDS complement(join(30804320..30804321,30804508..30804763, 30804890..30804942,30805112..30805245,30806088..30806122)) /locus_tag="TCM_016007" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24397.1" /translation="MSGRPLPLVFPRLELVAGLQMCCGPEVEGCCWLIVWLFFVLKLS LLELVELRDICIWELGLVHSTPRLLELIPFISLKDNHMVHTCLRQTSDPVKCTQNEAS GLGHLMFHLLNLEMAQNLRGSENVKTSQGLMIVTQHWTRSELRRLMLSSSSYPSLAA" gene complement(30805197..30811116) /locus_tag="TCM_016008" /note="dbxref CacaoGD:Thecc1EG016008" mRNA complement(join(30805197..30805245,30808895..>30809486)) /locus_tag="TCM_016008" /product="Phosphatidic acid phosphatase (PAP2) family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT4G22550.1" /inference="similar to AA sequence:TAIR:AT4G22550.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1114t3; alternateUTRof:Thecc1EG016008t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1114t6_C1" mRNA complement(join(30805197..30805342,30808895..>30809486)) /locus_tag="TCM_016008" /product="Phosphatidic acid phosphatase (PAP2) family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT4G22550.1" /inference="similar to AA sequence:TAIR:AT4G22550.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1114t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1114t6_C1" mRNA complement(join(30805405..30805473,30808895..30809577, 30810820..30811116)) /locus_tag="TCM_016008" /product="Phosphatidic acid phosphatase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G22550.1" /inference="similar to AA sequence:TAIR:AT4G22550.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1114t6_C1" CDS complement(join(30808910..30809577,30810820..30810832)) /locus_tag="TCM_016008" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Phosphatidic acid phosphatase family protein, putative isoform 1" /protein_id="EOY24398.1" /db_xref="TAIR:AT4G22550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUW4" /translation="MHYQVDPKDPNYQTPYPPSPPPPPPPSMGSPKTTTQPFLGPLIT LDTTVSHFLHTLFKPILPTFLLLLLEYSADFRFSFPVSLSLFLASPSLSSRSTPFILG LLLDLAVIGLIKLIFRRTRPPYNPNMSPVVHADNFSFPSGHASRVLFSATLFHLILQN DDGFVSDFIKQWTKLEADFVLLGVWVWAIMTATSRVLLGRHFLFDVLAGVIIGVLEGI VAFLVFWF" CDS complement(30808910..>30809485) /locus_tag="TCM_016008" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Phosphatidic acid phosphatase (PAP2) family protein, putative isoform 2" /protein_id="EOY24399.1" /db_xref="TAIR:AT4G22550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUW4" /translation="QPFLGPLITLDTTVSHFLHTLFKPILPTFLLLLLEYSADFRFSF PVSLSLFLASPSLSSRSTPFILGLLLDLAVIGLIKLIFRRTRPPYNPNMSPVVHADNF SFPSGHASRVLFSATLFHLILQNDDGFVSDFIKQWTKLEADFVLLGVWVWAIMTATSR VLLGRHFLFDVLAGVIIGVLEGIVAFLVFWF" CDS complement(30808910..>30809485) /locus_tag="TCM_016008" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Phosphatidic acid phosphatase (PAP2) family protein, putative isoform 2" /protein_id="EOY24400.1" /db_xref="TAIR:AT4G22550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUW4" /translation="QPFLGPLITLDTTVSHFLHTLFKPILPTFLLLLLEYSADFRFSF PVSLSLFLASPSLSSRSTPFILGLLLDLAVIGLIKLIFRRTRPPYNPNMSPVVHADNF SFPSGHASRVLFSATLFHLILQNDDGFVSDFIKQWTKLEADFVLLGVWVWAIMTATSR VLLGRHFLFDVLAGVIIGVLEGIVAFLVFWF" mobile_element 30811779..30811840 /note="source:scaffold_4_CACTA_0503 7312 7373" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30811840..30811918 /note="source:scaffold_4_CACTA_0503 7617 7695" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30811963..30812359) /note="source:scaffold_4_CACTA_0503 6784 7241" /mobile_element_type="transposon:TIR/CACTA" gene complement(30812557..30815366) /locus_tag="TCM_016009" /note="dbxref CacaoGD:Thecc1EG016009" mRNA complement(join(30812557..30813999,30815258..30815366)) /locus_tag="TCM_016009" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025737t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(30813520..30813972) /locus_tag="TCM_016009" /note="paralog of Thecc1EG025737t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24401.1" /translation="MEVGVRGRLLMQSLLREYGITCIPMDDLAFDAVHHNYIHLAKVQ CLDFNFYTFSRLVSYAVKRGEQFFFAFMLVLSVMKLHSSPHALVATTIDCLNRGPDRK TWLNYEDPEYLFLTDAEKAIEREREVISDDFFNPDAGCLVYRSFCCHF" mobile_element complement(30815386..30815485) /note="source:scaffold_5_CACTA_0615 1822 1916" /mobile_element_type="transposon:TIR/CACTA" gene 30821249..30822475 /locus_tag="TCM_016010" /note="dbxref CacaoGD:Thecc1EG016010" mRNA 30821249..30822475 /locus_tag="TCM_016010" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:28455.m000360" /inference="similar to AA sequence:Phytozome:POPTR_0003s11110.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11978t00001" CDS 30821418..30822272 /locus_tag="TCM_016010" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24402.1" /db_xref="Phytozome:POPTR_0003s11110.1" /db_xref="TAIR:AT1G62520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NMZ9" /translation="MASRWVKSLQCKSRAFDDVYHPNPKHLIPSSSCRRSSQSIKDVI ETTKNKPKKSNPKLLPKSSSKSEPDLNNPPPRPRRSSSLPARPVRNPDPVLPSLTELP EGHPSRNVVEIIFHTSWSPKAFTGRIEMIFKVQNGPRTVTRFEEYRETVKTRSGSGGP ASADEENARCIADGNEVMRFHCLGPTSGNCGMNDTWLFSGGKGAAICTYSGSGGAHES AGGGTGRRAMLVCRVIAGRVSKRVGFGYESLLDGRVGYDSVSGENGELLVFDPRAVLP CFLIIYKL" gene complement(30824530..30829574) /locus_tag="TCM_016011" /note="dbxref CacaoGD:Thecc1EG016011" mRNA complement(join(30824530..30824866,30825692..30825750, 30826355..30826504,30826991..30827083,30829010..30829120, 30829484..30829574)) /locus_tag="TCM_016011" /product="Adenine phosphoribosyl transferase 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g14790.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034718t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s00360.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08432t00001" CDS complement(join(30824813..30824866,30825692..30825750, 30826355..30826504,30826991..30827083,30829010..30829120, 30829484..30829565)) /locus_tag="TCM_016011" /note="paralog of Thecc1EG034718t2" /codon_start=1 /product="Adenine phosphoribosyl transferase 4" /protein_id="EOY24403.1" /db_xref="Phytozome:POPTR_0001s00360.1" /db_xref="TAIR:AT4G12440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P31166" /translation="MSAYRDKDPRIHGIQSKIRVVPDFPKPGIMFQDITTLLLDPKAF KDTVDLFVERYKGKNISVVAGIEARGFIFGPPIALEIGAKFVPLRKPKKLPGKVISEE YVLEYGRDCLQMHVGAVEPGERALVVDDLIATGGTLCAAMNLLERVGAEVVECACVIE LPDLKGRERLNGKPLYVLVESH" gene complement(30839940..30843967) /locus_tag="TCM_016012" /note="dbxref CacaoGD:Thecc1EG016012" mRNA complement(join(30839940..30840407,30840914..30841039, 30841228..30842005,30843834..30843967)) /locus_tag="TCM_016012" /product="WRKY DNA-binding protein 21, putative" /inference="alignment:exonerate- protein:2:ricco:28455.m000362" /inference="similar to AA sequence:Phytozome:POPTR_0003s11120.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10830t00001" CDS complement(join(30840257..30840407,30840914..30841039, 30841228..30841877)) /locus_tag="TCM_016012" /codon_start=1 /product="WRKY DNA-binding protein 21, putative" /protein_id="EOY24404.1" /db_xref="Phytozome:POPTR_0003s11120.1" /db_xref="TAIR:AT2G30590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVH4" /translation="MTEASGVCVSMTPRWDSKVHEVAQSSFRRANHLFSCISDQSQKR SIQEVSLMAQDAVNGFRKLLTLLDGSRGSDCKRIRKGPLPKSHKVKPIEFMDSPNFAP QSSGYKSSQPHIPRQSVSPQTNQSNTGLIPRNVVVLPNSIMGLHQSSILPSISMFRLD ARSNMDKKTIPQSSSEILVSQDESCLFPSKRKVGTESEEASTKCAASTGGCHCSKGRK LRIKKTVRVPAVSNKLSDIPPDDYSWRKYGQKPIKGSPYPRSYYKCSSMRGCPARKHV ERCLEDPTMLVVTYEGDHKHSRITFQPSNVMV" mobile_element 30843172..30843295 /note="source:scaffold_4_CACTA_0490 3062 3180" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30843196..30843299) /note="source:scaffold_6_CACTA_0712 1394 1480" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30843223..30843324 /note="source:CACAO_M_E5326_F22_scaffold_2 3413 3518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30843231..30843309) /note="source:CACAO_M_E43428_F369_scaffold_5 1244 1322" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(30844353..30849666) /locus_tag="TCM_016013" /note="dbxref CacaoGD:Thecc1EG016013" mRNA complement(join(30844353..30846208,30846332..30846836, 30847011..30847157,30847506..30847718,30849276..30849666)) /locus_tag="TCM_016013" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11130.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00340.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06697t00001" CDS complement(join(30844857..30846208,30846332..30846836, 30847011..30847157,30847506..30847616)) /locus_tag="TCM_016013" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24405.1" /db_xref="Phytozome:POPTR_0001s00340.1" /db_xref="TAIR:AT1G12120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HP96" /translation="MLMLGDFDLNSMQGYTDSLKDIFKQTMLNQEIVFRKQVHELHRL YIVQKTLMKDLAPLEHEKYNSWKAKAQSLPQETRLPSNSVPMVGSTVSLSQELLEGWK GKYHKFPQRSFDLQLLPDQYISRNDNNLPHKGKDGEHLKETVDLNSLHGGDFSVPLEL RLSLSLGVANRTKEDKNRSWYDKKTNTFPEIVIDLEESTEKPSESGGKHDSQVTITSD PITSRSMKKDPSHKIAESSSFDGDGKCVQDWNYSGQGLKRHENLPYENIFIRKRKFIS YGVGHVDLNEVQLDDLSCHSDDAIVTHPSTTSSSADFSGLVSRSEDPLCPTTFWRKEI KEFPNDAFEMLQQDDGVNLALMNSNNKDRRTEFQVRNSELNGRNECEKSLISPAYVSR PQINLSEDFGSLSENTKLGKDELMLELQNCPGHGPKPAYLVARQVGCEKTEAGDTLLL CSDQIQFTIEDEHPDKSPASGKSSCISDNDSRTVRTVQSGIEPHNSNLPASDQFSGTH GGSHTAEILSGEQDQRSSDSNEIKHDCYNKIEESAEVDDLIQIAAESLIHISLENSSC YQESSTQTGSNELDNEDKEQPQCSSDSFELMTLKLTESSADDFSVSSKPFEVSDSERK DFGIKLRRGRRLKDFQRDILPGLASLSRHEIREDINILEGVLRSREYRKMRAKMANGE SWCTPVRSRRSRLNYVGRKTFR" gene 30852191..30855730 /locus_tag="TCM_016015" /note="dbxref CacaoGD:Thecc1EG016015" mRNA join(30852191..30852533,30852672..30853247, 30853866..30853936,30854184..30854336,30854435..30854517, 30854660..30854795,30854886..30855059,30855230..30855730) /locus_tag="TCM_016015" /product="Flavin-binding monooxygenase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016016t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s00330.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9907t4" gene 30852352..30859758 /locus_tag="TCM_016016" /note="dbxref CacaoGD:Thecc1EG016016" mRNA join(30852352..30852533,30852672..30852963, 30856761..30857053,30857665..30857735,30858052..30858204, 30858297..30858379,30858516..30858651,30858725..30858898, 30859061..30859489) /locus_tag="TCM_016016" /product="Flavin-binding monooxygenase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00330.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016015t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00330.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01194t00001; inference alignment:Newbler:10:TSA:cgbaL_g11313t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9907t4" CDS join(30852473..30852533,30852672..30852963, 30856761..30857053,30857665..30857735,30858052..30858204, 30858297..30858379,30858516..30858651,30858725..30858898, 30859061..30859255) /locus_tag="TCM_016016" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016015t1" /codon_start=1 /product="Flavin-binding monooxygenase family protein isoform 2" /protein_id="EOY24408.1" /db_xref="Phytozome:POPTR_0001s00330.1" /db_xref="TAIR:AT1G62620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FWW9" /translation="MLKIQLSGCKFDSLRTQQQPVKSRHVAVVGAGAAGLVAARELHR EGHSVVVFERGNEVGGTWVYTSRVEPDPLGIDPTRPIVHSSLYSSLRTNLPREVMGFM DFPFVTLAGENRDPRMFPGHREVLMYLKDFAREFEVKEMVRFETEVVKVWILENGKWK VRSKKTIFFNNENNDHYNADIDNINKSEVELDDEIYDAVVVCNGHHTEPRIAEIPGIN LWPGKQMHSHNYRVPESFTDQVVILIGSSSSAVDICRDVAGVAKEVHVASRSVAHETY TKQPGYDNLWIHSMIDAAHEDGTVVFQNGKVVLADVIMHCTGYKYQFPFLDTNGIVTV DDNRLGPLYKHVFPPALAPWLSFIGIPWKIAPFPLFEFQSKWIAGVLSGRITLPSQKE MMEDIKAFYSTLEASGVPKRYTHKMGESQFEYNNWLAAQCGCQGIEKWRKQIYLAASA NKHLRPDTYRDEWEDHDLVLEAHEDFVKYTSKSDS" CDS join(30852473..30852533,30852672..30853247, 30853866..30853936,30854184..30854336,30854435..30854517, 30854660..30854795,30854886..30855059,30855230..30855418) /locus_tag="TCM_016015" /note="paralog of Thecc1EG016016t2" /codon_start=1 /product="Flavin-binding monooxygenase family protein" /protein_id="EOY24406.1" /db_xref="Phytozome:POPTR_0001s00330.1" /db_xref="TAIR:AT1G62620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FWW9" /translation="MLKIQLSGCKFDSLRTQQQPVKSRHVAVVGAGAAGLVAARELHR EGHSVVVFERGNEVGGTWVYTSRVEPDPLGIDPTRPIVHSSLYSSLRTNLPREVMGFM DFPFVTLAGENRDPRMFPGHREVLMYLKDFAREFGVEEMVRFETEVVEVGILEDEKWK VRSKKTSFFNNENNDHIDIINSKSEVEFVDEIYDAVVVCNGHYTQPRIAEIPGINLWP GKQMHSHNYRVPEPFRDQVVIVIGSSSSAVDICRDIAGVAKEVHVASRSVADETYTKQ PGYDHLWLHSMIDSAHEDGTVVFQNGKVVLADVIIHCTGFKYHFPFLDTNGIVTVDDN RLGPLYKHVFPAALAPWLSFIGIPWKIFPFPFFELQSKWVAGVLSGRITLPSQKEMME DIKAFYSALEAAGIPKRYTHNMSESGFEYCDWLAAQCGCQVIENWRKQMFHAAFANWL VRPDTHRDEWEDHDLVLEAHEYFVKYASKS" mRNA join(30856325..30857053,30857665..30857735, 30858052..30858204,30858297..30858379,30858516..30858651, 30858725..30858898,30859061..30859758) /locus_tag="TCM_016016" /product="Flavin-binding monooxygenase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016015t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00330.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11313t00001" CDS join(30856435..30857053,30857665..30857735, 30858052..30858204,30858297..30858379,30858516..30858651, 30858725..30858898,30859061..30859255) /locus_tag="TCM_016016" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016015t1" /codon_start=1 /product="Flavin-binding monooxygenase family protein isoform 1" /protein_id="EOY24407.1" /db_xref="Phytozome:POPTR_0001s00330.1" /db_xref="TAIR:AT1G62620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FWW9" /translation="MNLAMPPAFPSVKSRHVAVVGAGAAGLVAARELRREGHSVVVFE RGNEVGGTWVYTPRVEPDPLGIDPTRPIVHTSLYSSLRTNLPREVMGFTDFPFITLAG ENRDPRRFPGHREVLMYLKDFAREFEVKEMVRFETEVVKVWILENGKWKVRSKKTIFF NNENNDHYNADIDNINKSEVELDDEIYDAVVVCNGHHTEPRIAEIPGINLWPGKQMHS HNYRVPESFTDQVVILIGSSSSAVDICRDVAGVAKEVHVASRSVAHETYTKQPGYDNL WIHSMIDAAHEDGTVVFQNGKVVLADVIMHCTGYKYQFPFLDTNGIVTVDDNRLGPLY KHVFPPALAPWLSFIGIPWKIAPFPLFEFQSKWIAGVLSGRITLPSQKEMMEDIKAFY STLEASGVPKRYTHKMGESQFEYNNWLAAQCGCQGIEKWRKQIYLAASANKHLRPDTY RDEWEDHDLVLEAHEDFVKYTSKSDS" mobile_element complement(30859567..30859643) /note="source:scaffold_1_CACTA_0032 2769 2845" /mobile_element_type="transposon:TIR/CACTA" gene 30859621..30862035 /locus_tag="TCM_016017" /note="dbxref CacaoGD:Thecc1EG016017" mRNA join(30859621..30859989,30860535..30860697, 30860919..30862035) /locus_tag="TCM_016017" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.18 coverage" CDS join(30859857..30859989,30860535..30860697, 30860919..30861060) /locus_tag="TCM_016017" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24409.1" /translation="MNQSLQKNHEFFELPFMARCGESSKPREFPSHNQGIEEMVIVDR ALSKEKEFITLKKDKKRRQLGRSSPGDVDITNLHSTVYCLMEKKKLLHQPGIEPGEKA IDAGVKELYIDGGKISRKQKKEWQFAQTAKKLKIVSRIVMFNA" mobile_element complement(30860673..30860751) /note="source:scaffold_1_CACTA_0032 2765 2844" /mobile_element_type="transposon:TIR/CACTA" gene complement(30862938..30864570) /locus_tag="TCM_016018" /note="dbxref CacaoGD:Thecc1EG016018" mRNA complement(join(30862938..30863586,30863719..30863859, 30863944..30864018,30864127..30864303,30864438..30864570)) /locus_tag="TCM_016018" /product="PLATZ transcription factor family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s14570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005554t1" /inference="similar to AA sequence:Phytozome:GSVIVT01001279001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1354t1_C2" CDS complement(join(30863170..30863586,30863719..30863859, 30863944..30864018,30864127..30864303,30864438..30864440)) /locus_tag="TCM_016018" /note="paralog of Thecc1EG005554t1" /codon_start=1 /product="PLATZ transcription factor family protein, putative" /protein_id="EOY24410.1" /db_xref="Phytozome:GSVIVT01001279001" /db_xref="TAIR:AT3G60670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D5AAE5" /translation="MVGASSIPHWLGILLGEKFFDPCVVHESAKKNEKNIFCLNCCVT ICPHCLPVHRPHRRLQIRRYVYQDVIRLSDAQKLINCSLVQPYTTNSAKVVFLNERPM SRPFRGSGNFCINCDRSLQDPFLFCSLSCKVNHFETTKHGGKKLDQNSELLPSSYKTR SDVSVTEIEEDPQMTPDSVLDSPVSPRTWSGGSTNTTATSNGGSAINCKSSLIACTAT TEFVKKKMKMKMKKSSCVLMPRVSCRSRCSQAAAAADSINRRKGVPRRSPLN" mobile_element complement(30866462..30866998) /note="source:CACAO_Again_on_E219_scaffold_10 5 536" /mobile_element_type="transposon:TIR/hAT" mobile_element 30867710..30868106 /note="source:CACAO_on_E454_scaffold_2 2 401" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 30869209..30875423 /locus_tag="TCM_016019" /note="dbxref CacaoGD:Thecc1EG016019" mRNA join(30869209..30869524,30870872..30871020, 30871463..30871599,30872532..30872637,30872728..30872846, 30873864..30873928,30874012..30874234,30874803..30875423) /locus_tag="TCM_016019" /product="3-ketoacyl-acyl carrier protein synthase III, III isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001278001" /inference="similar to AA sequence:Phytozome:GSVIVT01001278001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc709t9" CDS join(30869340..30869524,30870872..30871020, 30871463..30871599,30872532..30872637,30872728..30872846, 30873864..30873928,30874012..30874234,30874803..30875024) /locus_tag="TCM_016019" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="3-ketoacyl-acyl carrier protein synthase III, III isoform 1" /protein_id="EOY24411.1" /db_xref="Phytozome:GSVIVT01001278001" /db_xref="TAIR:AT1G62640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P49243" /translation="MANTSGFFTPSVPSLRRKIQPPIGISRSGFCFSEGSCRRVVCSS GIEGAEKHVSPSESRVPKLVSKGCKLVGCGSAVPTLSVSNDDLARIVDTSDEWISVRT GIRNRRVISGKDSLRNLAVEAARKALEMADVDPNDLDLILMCTSTPEDLFGGAPQVQR DLGCTKTPLAYDITAACSGFVLGLVSAACHIRGGGFRNVLVIGADGLSRFVDWSDRGT CILFGDAAGALLVQACDAEEDGLLSFDLHSDGEGGRHLSASIKDNETDDLLSSNGSLL DFPPKRSSYSCIQMNGKEVFRFAVRCVPQSIESALEKAGLTASSIDWLLLHQANQRII DAVATRLEVPQEQVISNLANYGNTSAASIPLALDEAVRSGKVKPGHTIATAGFGAGLT WGSAIIRWG" mRNA join(30871513..30871599,30872532..30872637, 30872728..30872846,30873864..30873928,30874012..30874234, 30874803..30875115,30875257..30875409) /locus_tag="TCM_016019" /product="3-ketoacyl-acyl carrier protein synthase III, III isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001278001" /inference="similar to AA sequence:Phytozome:Glyma18g44350.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03046t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc709t9" CDS join(30871516..30871599,30872532..30872637, 30872728..30872846,30873864..30873928,30874012..30874234, 30874803..30875024) /locus_tag="TCM_016019" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="3-ketoacyl-acyl carrier protein synthase III, III isoform 2" /protein_id="EOY24412.1" /db_xref="Phytozome:Glyma18g44350.1" /db_xref="TAIR:AT1G62640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P49243" /translation="MADVDPNDLDLILMCTSTPEDLFGGAPQVQRDLGCTKTPLAYDI TAACSGFVLGLVSAACHIRGGGFRNVLVIGADGLSRFVDWSDRGTCILFGDAAGALLV QACDAEEDGLLSFDLHSDGEGGRHLSASIKDNETDDLLSSNGSLLDFPPKRSSYSCIQ MNGKEVFRFAVRCVPQSIESALEKAGLTASSIDWLLLHQANQRIIDAVATRLEVPQEQ VISNLANYGNTSAASIPLALDEAVRSGKVKPGHTIATAGFGAGLTWGSAIIRWG" gene complement(30875230..30877501) /locus_tag="TCM_016020" /note="dbxref CacaoGD:Thecc1EG016020" mRNA complement(join(30875230..30875332,30875575..30877501)) /locus_tag="TCM_016020" /product="Exostosin family protein" /inference="alignment:exonerate- protein:2:ricco:28455.m000369" /inference="similar to AA sequence:ricco:28455.m000369" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc713t5" CDS complement(30875614..30877005) /locus_tag="TCM_016020" /note="dbxref ricco:28455.m000369" /codon_start=1 /product="Exostosin family protein" /protein_id="EOY24413.1" /db_xref="TAIR:AT4G22580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HP94" /translation="MACKTQITTIFFSIKFHLFLLSIINSASSHQILNTESTSNRTTT EDCNNRWIYIRNLPSRFNLDLLTNCSEYPLFDDFCPYLANHGLGQKTHAKSRSWYRTD PLLLELVFHRRILEYPCLTDDPNVANAIFLPYYAAIDSLRYLYGPDVNSSFQHGMELF DFLQSDEPGIWKRHMGHDHFLVMARPAWDFSQPLNNDPPIWGTSFLELPEFYNVTALV PEGRAWPWQEHSVPYPTSFHPQNLAFFEAWIQRVKRSKRTTLMLFAGGGGIGATPNIR RSIRNECENSSINNNSSRFNVLENNVMYSKICDIVDCSNGICEHDPIRYMKPMLQSTF CLQPPGDTPTRRSTFDAILAGCIPVFFEELSAKMQYVWHLPEEKYAEFSVFIPKEEVV FKGLRILDVLMGIPRSEVRRMRESVQDLIPRVMYRRHGSSLGLRTKKDAFDIAIDGTL QRMRERLANILAR" gene complement(30877810..30882961) /locus_tag="TCM_016021" /note="dbxref CacaoGD:Thecc1EG016021" mRNA complement(30877810..30879313) /locus_tag="TCM_016021" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:28455.m000371" /inference="similar to AA sequence:ricco:28455.m000371" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9891t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9891t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2269t2" mRNA complement(join(30877819..30879423,30881096..30881300, 30882008..30882033,30882777..30882961)) /locus_tag="TCM_016021" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28455.m000371" /inference="similar to AA sequence:ricco:28455.m000371" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9891t2" CDS complement(join(30878418..30879423,30881096..30881300, 30882008..30882033,30882777..30882853)) /locus_tag="TCM_016021" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28455.m000371" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24414.1" /db_xref="TAIR:AT4G22600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AYG1" /translation="MYDRTKTIGHGLSLGGWSSKLVIVLCNSHVLIFSAVKRLFFSST PPLNLSQKTTYKIMEGLIHTSMHEFQTIHNGKKEDGDIEILRLRRQSYGLARGYMHRQ ITQKAKTHQGTNSDTCLFPSKTLCSDPFSPFCNKAKKPLTALKFLHHPPYTSSSATMP RPFSFFSRKKTTTVPFKDLYEDWFNTLTNTLLPLLRQSLSSPSPTLLPFRRDLLLQHF LSHYDFLDLAASNDVSQMLFPSWRNSLEIPFLFLGDLHPYLFTNLLRSFIDAANNEKD AEKNGFNYPAEGSLLETFEYSLDKPWPVLMAWTNPSENLMLRIEQIECGLRLMVPPLV SRVKKVQAAFVGRVAEKWAAYEGKKMALEEAVKVEMEEMLGVFVDANRLRRSVLIEIV NATDVYQGALFLEGLAQFLIGFKDRALLGEFERCKIPINGVHWGL" CDS complement(30878418..30879257) /locus_tag="TCM_016021" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28455.m000371" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24415.1" /db_xref="TAIR:AT4G22600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AYG1" /translation="MPRPFSFFSRKKTTTVPFKDLYEDWFNTLTNTLLPLLRQSLSSP SPTLLPFRRDLLLQHFLSHYDFLDLAASNDVSQMLFPSWRNSLEIPFLFLGDLHPYLF TNLLRSFIDAANNEKDAEKNGFNYPAEGSLLETFEYSLDKPWPVLMAWTNPSENLMLR IEQIECGLRLMVPPLVSRVKKVQAAFVGRVAEKWAAYEGKKMALEEAVKVEMEEMLGV FVDANRLRRSVLIEIVNATDVYQGALFLEGLAQFLIGFKDRALLGEFERCKIPINGVH WGL" gene 30890058..30895222 /locus_tag="TCM_016022" /note="dbxref CacaoGD:Thecc1EG016022" mRNA join(30890058..30890259,30892409..30892472, 30892577..30893322,30893434..30893505,30893611..30893736, 30893870..30893926,30894011..30894112,30894205..30894282, 30894468..30894537,30894627..30894697,30894783..30894875, 30894949..30895222) /locus_tag="TCM_016022" /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:frave:gene32245.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014935t4" /inference="similar to AA sequence:ricco:28200.m000196" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b015485t1a2; inference alignment:Newbler:10:TSA:cgbaB_g02355t00001" mRNA join(30890072..30890259,30892409..30892472, 30892577..30893073,30893182..30893322,30893434..30893505, 30893611..30893736,30893870..30893926,30894011..30894112, 30894205..30894282,30894468..30894537,30894627..30894697, 30894783..30894875,30894949..30895046) /locus_tag="TCM_016022" /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:frave:gene32245.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014935t4" /inference="similar to AA sequence:ricco:28200.m000196" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02355t00001" mRNA join(30890079..30890259,30892409..30892472, 30892577..30893073,30893182..30893322,30893434..30893505, 30893611..30893736,30893870..30893926,30894205..30894282, 30894468..30894537,30894627..30894697,30894783..30894875, 30894949..30895191) /locus_tag="TCM_016022" /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:frave:gene32245.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014935t4" /inference="similar to AA sequence:ricco:28200.m000196" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3530t2_C2; inference alignment:Newbler:10:TSA:cgbaB_g02355t00001" CDS join(30892780..30893073,30893182..30893322, 30893434..30893505,30893611..30893736,30893870..30893926, 30894011..30894112,30894205..30894282,30894468..30894537, 30894627..30894697,30894783..30894875,30894949..30895002) /locus_tag="TCM_016022" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28200.m000196; paralog of Thecc1EG014935t4" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein isoform 1" /protein_id="EOY24416.1" /db_xref="TAIR:AT4G22590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64896" /translation="MELKSNHSSPVLTDPTPINKSRLGIHSSLLSYPQSGGSLSSGKY MTIPRKKPGKLDDVRSNGWLDAMKSSSPPRKKLIKDFNIEVAADDIDIAYCSWMIKYP SALKSFEQISKNAKSKKIAVFLDYDGVLSPIVDDPDRAFMSDAMRSAVRNVAKHFPTA IISGRSRDKVYELVGLTELYYAGSHGMDIMGPVSHTESDDHPNCIRSTDQQGKEVNLF QPAREFIPMIDEVFKTLVENTKDIKGAKVENHKFCASVHYRNVEEKNWPTIAQCVHDI LKDYPRLRLTHGRKVLEIRPVIDWNKGKAVEFLLEALGLSGRDDVLPIYIGDDRTDED AFKVLREGSRGYGILVSSVPKESKAFYSVRDPSEVKKFLKALVRCKKFEEA" CDS join(30892780..30893073,30893182..30893322, 30893434..30893505,30893611..30893736,30893870..30893926, 30894205..30894282,30894468..30894537,30894627..30894697, 30894783..30894875,30894949..30895002) /locus_tag="TCM_016022" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28200.m000196; paralog of Thecc1EG014935t4" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 3" /protein_id="EOY24418.1" /db_xref="TAIR:AT4G22590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64896" /translation="MELKSNHSSPVLTDPTPINKSRLGIHSSLLSYPQSGGSLSSGKY MTIPRKKPGKLDDVRSNGWLDAMKSSSPPRKKLIKDFNIEVAADDIDIAYCSWMIKYP SALKSFEQISKNAKSKKIAVFLDYDGVLSPIVDDPDRAFMSDAMRSAVRNVAKHFPTA IISGRSRDKVYELVGLTELYYAGSHGMDIMGPVSHTESDDHPNCIRSTDQQGKEVNLF QPAREFIPMIDENWPTIAQCVHDILKDYPRLRLTHGRKVLEIRPVIDWNKGKAVEFLL EALGLSGRDDVLPIYIGDDRTDEDAFKVLREGSRGYGILVSSVPKESKAFYSVRDPSE VKKFLKALVRCKKFEEA" CDS join(30893176..30893322,30893434..30893505, 30893611..30893736,30893870..30893926,30894011..30894112, 30894205..30894282,30894468..30894537,30894627..30894697, 30894783..30894875,30894949..30895002) /locus_tag="TCM_016022" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28200.m000196; paralog of Thecc1EG014935t4" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein isoform 2" /protein_id="EOY24417.1" /db_xref="TAIR:AT4G22590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64896" /translation="MQIKYPSALKSFEQISKNAKSKKIAVFLDYDGVLSPIVDDPDRA FMSDAMRSAVRNVAKHFPTAIISGRSRDKVYELVGLTELYYAGSHGMDIMGPVSHTES DDHPNCIRSTDQQGKEVNLFQPAREFIPMIDEVFKTLVENTKDIKGAKVENHKFCASV HYRNVEEKNWPTIAQCVHDILKDYPRLRLTHGRKVLEIRPVIDWNKGKAVEFLLEALG LSGRDDVLPIYIGDDRTDEDAFKVLREGSRGYGILVSSVPKESKAFYSVRDPSEVKKF LKALVRCKKFEEA" gene 30895958..30900751 /locus_tag="TCM_016023" /note="dbxref CacaoGD:Thecc1EG016023" mRNA join(30895958..30896388,30896487..30896565, 30896651..30896726,30896822..30896905,30897056..30897160, 30897691..30897771,30897870..30897934,30898091..30898160, 30898251..30898328,30898900..30898997,30899102..30899237, 30900171..30900751) /locus_tag="TCM_016023" /product="Transaldolase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00260.1" /inference="similar to AA sequence:Phytozome:GSVIVT01004774001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02570t00001_C2" mRNA join(30895987..30896388,30896487..30896565, 30896651..30896694,30896822..30896905,30897056..30897160, 30897691..30897771,30897870..30897934,30898091..30898160, 30898251..30898328,30898900..30898997,30899102..30899237, 30900171..>30900281) /locus_tag="TCM_016023" /product="Transaldolase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s00260.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00260.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc435t2; inference alignment:Newbler:10:TSA:cgbaP1_g02570t00001_C2" CDS join(30896205..30896388,30896487..30896565, 30896651..30896726,30896822..30896905,30897056..30897160, 30897691..30897771,30897870..30897934,30898091..30898160, 30898251..30898328,30898900..30898997,30899102..30899237, 30900171..30900317) /locus_tag="TCM_016023" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transaldolase isoform 1" /protein_id="EOY24419.1" /db_xref="Phytozome:GSVIVT01004774001" /db_xref="TAIR:AT1G12230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D6N3G8" /translation="MSLSLQSPPTTFLSSSSSSLAKSRLRFANVSSSSALLFKFNRSF PVIRASSSSSFSSSLDTGLSTELDAVSTFSEIVPDTVIFDDFERFPPTAATVSSSLLL GILSLPDTIFRNAVDMALADSGCSGLDNPELRLSCFCNKALVNVGGDLAKLVPGRVST EVDARLAYDTHGIIRRVHDLLKLYNEIDVPPERLLFKIPSTWQGIEASRLLESEGIQT HLTFVYSFAQAAAAAQAGTSVIQIFVGRVRDWARNHSGDPEIEAAIQRGEDPGLVLVT KAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESVTVPDEKYSY VRRLSPQSAATYNFTAEELTNWDQLSLASSMGPASVELLAAGLDGYVNQGKRVEELLV KIWPPPNV" CDS join(30896553..30896565,30896651..30896694, 30896822..30896905,30897056..30897160,30897691..30897771, 30897870..30897934,30898091..30898160,30898251..30898328, 30898900..30898997,30899102..30899237,30900171..>30900281) /locus_tag="TCM_016023" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transaldolase isoform 2" /protein_id="EOY24420.1" /db_xref="Phytozome:POPTR_0001s00260.1" /db_xref="TAIR:AT1G12230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D6N3G8" /translation="MILKGFHQLPQLLALHCCWNAVDMALADSGCSGLDNPELRLSCF CNKALVNVGGDLAKLVPGRVSTEVDARLAYDTHGIIRRVHDLLKLYNEIDVPPERLLF KIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGTSVIQIFVGRVRDWARNH SGDPEIEAAIQRGEDPGLVLVTKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYII APLKVLQSLKESVTVPDEKYSYVRRLSPQSAATYNFTAEELTNWDQLSLASSMGPASV ELLAAGLDGYVNQGKRVEE" gene 30901668..30908042 /locus_tag="TCM_016024" /note="dbxref CacaoGD:Thecc1EG016024" mRNA join(30901668..30902201,30903468..30904134, 30904583..30904591,30905621..30906477,30906572..30906733, 30906827..30907062,30907145..30907232,30907349..30908042) /locus_tag="TCM_016024" /product="Glycosyl hydrolases family 32 protein" /inference="alignment:exonerate- protein:2:ricco:28200.m000194" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014931t1" /inference="similar to AA sequence:ricco:28200.m000194" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00529t00001" CDS join(30902124..30902201,30903468..30904134, 30904583..30904591,30905621..30906477,30906572..30906733, 30906827..30907062,30907145..30907232,30907349..30907552) /locus_tag="TCM_016024" /note="dbxref ricco:28200.m000194; paralog of Thecc1EG014931t1" /codon_start=1 /product="Glycosyl hydrolases family 32 protein" /protein_id="EOY24421.1" /db_xref="TAIR:AT1G12240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8L2T0" /translation="MPHLFVLAIAFLFPFFFLVVKLLKKQLIHGGYTLPSGKIKSNQI YFGKFSLSFFFAFSWSQPRTVNHPPCLPSEALPIYSNENLRALKHRTPLFLPSYSAVR FYFFFIRFIQLYQTMADTDPFLPKSSSDGSYPTGSQATRRSPIKEQLTIFFGLLAVGL FAALLIGKNGSYNAHVQENKHGSLATSTTKKPETLGPVSRGPAAGVSEKSNRLSAKVD GNLLVYPWNNSMLSWQRTAFHFQPEKNWMNDPNGPLFYKGWYHFFYQYNPNAAVWGDI VWGHAVSRDMIHWLHLPLAMVADQWYDVNGVWTGSATILPDGKVVMLYTGSTAEAVQV QNLAYPANPNDPLLINWVKYPGNPVLVPPPGIDKMDFRDPTTAWLTSEGKWRITIGSK INKTGIALIYDTTDFINYERLDGALHAVSGTGMWECVDFFPVSKTEENGLETSVNGPG VKHVVKASLDDDRHDYYAIGTYHEKNGTWIPDQPEIDVGIGIRYDYGIFYAAKTFYDQ NKNRRVLWGWIGESDSEAADVQKGWASLQSIPRTILFDNKTGTHLLQWPVEETESLRL KSNEFNQVTLQAGTVVPLDVGSATQLDIMAEFVIDKEALEKATGSNETFSCGTSGGAA ERGALGPFGLLALADESLSEKTPVYFYIAKGSDGNLKTFFCNDQSRSSAASDVNKLIY GSFVPVLEGENLSLRMLVDHSIIESFAQGGRTVITSRVYPTKAIYGAAKVFLFNNATE ASVTASLKIWQMNSAFIRPYPNDGKF" mobile_element complement(30902562..30902768) /note="source:INTACT402_F76_scaffold_5-int 68 280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30911617..30912163 /note="source:CACAO_M_E34406_F19_scaffold_5 2716 3262" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30913274..30917903 /locus_tag="TCM_016026" /note="dbxref CacaoGD:Thecc1EG016026" mRNA join(30913274..30913891,30914175..30914284, 30914379..30914649,30914760..30914898,30915438..30915804, 30916214..30916579,30916676..30916754,30916913..30917112, 30917213..30917903) /locus_tag="TCM_016026" /product="Cupredoxin superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001270001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014937t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01687t00001_C2" mRNA join(30913612..30913891,30914175..30914284, 30914379..30914649,30914760..30914898,30915438..30915804, 30916214..30916579,30916676..30916756,30916913..30917112, 30917213..30917633) /locus_tag="TCM_016026" /product="Cupredoxin superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001270001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014937t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10071t1; inference alignment:Newbler:10:TSA:cgbaP2_g01687t00001_C2" CDS join(30913751..30913891,30914175..30914284, 30914379..30914649,30914760..30914898,30915438..30915804, 30916214..30916579,30916676..30916754,30916913..30917112, 30917213..30917315) /locus_tag="TCM_016026" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014937t1" /codon_start=1 /product="Cupredoxin superfamily protein isoform 1" /protein_id="EOY24422.1" /db_xref="Phytozome:POPTR_0003s11220.1" /db_xref="TAIR:AT4G12420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHN6" /translation="MALGKFLGLFLIHIALLLGLCFAGDPFVFYDFEVSYITASPLGV PQQVIAINNKFPGPTINATTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLPGTN CPIPPKWNWTYQFQVKDQIGSFFYFPSLHFQRAAGGFGGFMINNRDIIPIPFDTPDGD ITIMIGDWYTRNHTALRKALDAGKDLGMPDGVLINGKGPYRYNDTLVPDGIDYETINV HPGRTYRLRVHNVGISTSLNFRIQSHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLL TTDQNASTDYYIVASARMVNESLWKRVTGVAILRYSNSKGKAAGPLPDPPQDEYDKTF SMNQARSIRWNVSASGARPNPQGSFRYGSINVTEIYVLQNKPPVTIDGKRRTTLSGIS FVNPATPIRLADQFKVKGVYKLDFPKAPLTGSPKMETSVINGTYRGFMEVILQNNDTK VQSYHMSGYAFFVVGMDYGEWSENSRGTYNKWDGIARTTTQVYPGAWTAILISLDNVG VWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPMPDNVLYCGALSKLQKPQDISWAT SITGGRSKLFFTVLMITSALLFLSR" CDS join(30913751..30913891,30914175..30914284, 30914379..30914649,30914760..30914898,30915438..30915804, 30916214..30916579,30916676..30916756,30916913..30916943) /locus_tag="TCM_016026" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014937t1" /codon_start=1 /product="Cupredoxin superfamily protein isoform 2" /protein_id="EOY24423.1" /db_xref="Phytozome:POPTR_0003s11220.1" /db_xref="TAIR:AT4G12420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHN6" /translation="MALGKFLGLFLIHIALLLGLCFAGDPFVFYDFEVSYITASPLGV PQQVIAINNKFPGPTINATTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLPGTN CPIPPKWNWTYQFQVKDQIGSFFYFPSLHFQRAAGGFGGFMINNRDIIPIPFDTPDGD ITIMIGDWYTRNHTALRKALDAGKDLGMPDGVLINGKGPYRYNDTLVPDGIDYETINV HPGRTYRLRVHNVGISTSLNFRIQSHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLL TTDQNASTDYYIVASARMVNESLWKRVTGVAILRYSNSKGKAAGPLPDPPQDEYDKTF SMNQARSIRWNVSASGARPNPQGSFRYGSINVTEIYVLQNKPPVTIDGKRRTTLSGIS FVNPATPIRLADQFKVKGVYKLDFPKAPLTGSPKMETSVINGTYRGFMEVILQNNDTK VQSYHMSGYAFFVVGMDYGEWSENSRGTYNKWDGIARTTTQVFILVRGRQS" mobile_element 30921751..30922831 /note="source:CACAO_on_E168_scaffold_10 62 1136" /mobile_element_type="transposon:TIR/hAT" gene complement(30922299..30924024) /locus_tag="TCM_016029" /note="dbxref CacaoGD:Thecc1EG016029" mRNA complement(join(30922299..30922978,30923218..30923337, 30923803..30924024)) /locus_tag="TCM_016029" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.70 coverage" CDS complement(join(30922926..30922978,30923218..30923337, 30923803..30923887)) /locus_tag="TCM_016029" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24424.1" /translation="MCVKMAIQHHTAMYIVVLLSVYAGQLRRGQVRPGQPLYNLVQLS GLRRQAPMVECGVSFPTKFWCIPFGPHRIHHYSIKADSNHN" gene complement(30925912..30928656) /locus_tag="TCM_016030" /note="dbxref CacaoGD:Thecc1EG016030" mRNA complement(join(30925912..30926055,30926186..30926260, 30926450..30926525,30926745..30926793,30927702..30927819, 30928004..30928159,30928381..30928656)) /locus_tag="TCM_016030" /product="Plant-specific transcription factor YABBY family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001269001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005549t1" /inference="similar to AA sequence:Phytozome:GSVIVT01001269001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00873t00001_C2" CDS complement(join(30925987..30926055,30926186..30926260, 30926450..30926525,30926745..30926793,30927702..30927819, 30928004..30928159,30928381..30928473)) /locus_tag="TCM_016030" /note="paralog of Thecc1EG005549t1" /codon_start=1 /product="Plant-specific transcription factor YABBY family protein" /protein_id="EOY24425.1" /db_xref="Phytozome:GSVIVT01001269001" /db_xref="TAIR:AT2G45190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZJG4" /translation="MSSSSTLSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVT VRCGHCTNLLPVNMRGLLLPSANQLHLAHSFFSPSHNLLEEISNPSQNFLLNQTNTND FALPTRGVADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSA AAKNWAHFPHIHFGLMPDQTPKKTNVRQQEGEDVLIKDGFFASANVGVSPY" mobile_element complement(30933816..30933882) /note="source:CACAO_M_S_E122136_F76_scaffold_10 13645 13709" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30934559..30941970 /locus_tag="TCM_016032" /note="dbxref CacaoGD:Thecc1EG016032" mRNA join(30934559..30935065,30935135..30935354, 30935441..30935470,30935683..30935789,30938655..30938689, 30938888..30939016,30941179..30941970) /locus_tag="TCM_016032" /product="Pentapeptide repeat-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28200.m000190" /inference="similar to AA sequence:Phytozome:POPTR_0003s11240.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02625t00002" mRNA join(30934893..30935065,30935156..30935354, 30935441..30935470,30935683..30935789,30938655..30938689, 30938888..30939016,30941179..30941969) /locus_tag="TCM_016032" /product="Pentapeptide repeat-containing protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:28200.m000190" /inference="similar to AA sequence:Phytozome:POPTR_0003s11240.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9937t2; inference alignment:Newbler:10:TSA:cgbaB_g02625t00002; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc455t3" CDS join(30934915..30935065,30935135..30935354, 30935441..30935470,30935683..30935789,30938655..30938689, 30938888..30939016,30941179..30941370) /locus_tag="TCM_016032" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentapeptide repeat-containing protein isoform 1" /protein_id="EOY24426.1" /db_xref="Phytozome:POPTR_0003s11240.1" /db_xref="TAIR:AT1G12250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1Q1" /translation="MALASVSSLSINSLSISSPSKAPCYHLQSFLKRFGVFCQINNPE IKAQIREFSSEKEDCSNNKYAVTDAKFKSWRALVSTALAAAMVAFGSDMSALAELNKY EAETRGEFGIGSAAQFGSADLRKAVHMNENFRRANFTAADMRESDFSGSTFNGAYLEK AVAYKANFTGADLSDTLMDRMVLNDANLTNAVLVRSVLTRSDLGGALIEGADFSDAVI DLPQKQALCKYANGKNPITGVSTRASLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGF CDKDTGLCEAK" CDS join(30934915..30935065,30935156..30935354, 30935441..30935470,30935683..30935789,30938655..30938689, 30938888..30939016,30941179..30941370) /locus_tag="TCM_016032" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentapeptide repeat-containing protein isoform 2" /protein_id="EOY24427.1" /db_xref="Phytozome:POPTR_0003s11240.1" /db_xref="TAIR:AT1G12250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1Q1" /translation="MALASVSSLSINSLSISSPSKAPCYHLQSFLKRFGVFCQINNPE IKAQIRDCSNNKYAVTDAKFKSWRALVSTALAAAMVAFGSDMSALAELNKYEAETRGE FGIGSAAQFGSADLRKAVHMNENFRRANFTAADMRESDFSGSTFNGAYLEKAVAYKAN FTGADLSDTLMDRMVLNDANLTNAVLVRSVLTRSDLGGALIEGADFSDAVIDLPQKQA LCKYANGKNPITGVSTRASLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDKDTGL CEAK" gene complement(30935797..30937552) /locus_tag="TCM_016033" /note="dbxref CacaoGD:Thecc1EG016033" mRNA complement(join(30935797..30937285,30937408..30937552)) /locus_tag="TCM_016033" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06543t00001" CDS complement(30935992..30937158) /locus_tag="TCM_016033" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24428.1" /translation="MRMIPVFRDYPKGCSPRGRFATQFSQHLVQSESPSSSSLYDSES EDLVASLFDDALESVSSAEVEGKDGSQALDTTSPIDQLETSDHEATEFPEEVVSESMP TDYAPRKKVLAIRGYPRGCGPKGKSQTPLSEDLESEGPDSSLWSGSELEVSLSKKGLD SITSAERETPKALDEIEHIDLKETSESLEEAKLVFSSSWYDLESEDSMVSIYNYSLES VALSEEEQGIDMPKVVDSMGLIDQSETSEPEDPFLPPKTIDLVTMDSPKGCRRRCPQV RDENILEATTFETNGLNHELSDAEDPSLIVLSDSEGSCSTNTCRSNLQESENLSGQCS NQFQEKGPSRTEHRVPKLIVTGWMAARNCPWRERKRASRSNTTRDANSSKRKKH" mobile_element complement(30937707..30938181) /note="source:CACAO_Mariner_E220_scaffold_9 8463 8964" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 30943899..30943988 /note="source:INTACT296_F13_scaffold_9-int 13139 13225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30943943..30943994 /note="source:scaffold_10_CACTA_0130 1144 1195" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30943995..30944010) /note="source:CACAO_Again_on_E207_scaffold_9 1005 1072" /mobile_element_type="transposon:TIR/hAT" gene complement(30945188..30962854) /locus_tag="TCM_016035" /note="dbxref CacaoGD:Thecc1EG016035" mRNA complement(join(30945188..30945592,30947220..30947843, 30948456..30948727,30948869..30949053,30951389..30951914)) /locus_tag="TCM_016035" /product="NAC domain protein, IPR003441 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g14700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014939t1" /inference="similar to AA sequence:ricco:28200.m000189" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2012t2_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9930t1" CDS complement(join(30945572..30945592,30947220..30947843, 30948456..30948727,30948869..30949028)) /locus_tag="TCM_016035" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28200.m000189; paralog of Thecc1EG014939t1" /codon_start=1 /product="NAC domain protein, IPR003441 isoform 2" /protein_id="EOY24430.1" /db_xref="TAIR:AT1G12260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4M8" /translation="MNTFTHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDL YKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYS RHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPQEEGWVVCRVFKKRMTT VRKVGEYDSPCWYDDQVSFMQDLDSPRRIPQPYASYHHHYPCKQELELQYNLPHDPFL QLPQLESPKVPQSAASVSCNSVVPYGYDRNNGSTLQSSTLTQEEHMQPGHQQNLNSLY NNSEQAVDQVTDWRVLDKFVASQLSHEEASKENNYPNAATSLQVAEQMNLLASESKRP EIAHQEYASTSTSSCQIDLVKKMN" mRNA complement(join(30946989..30947843,30948456..30948727, 30948869..30949053,30951389..30951531,30962357..30962854)) /locus_tag="TCM_016035" /product="NAC domain protein, IPR003441 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g14700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014939t1" /inference="similar to AA sequence:ricco:28200.m000189" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9930t1" CDS complement(join(30947208..30947843,30948456..30948727, 30948869..30949028)) /locus_tag="TCM_016035" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28200.m000189; paralog of Thecc1EG014939t1" /codon_start=1 /product="NAC domain protein, IPR003441 isoform 1" /protein_id="EOY24429.1" /db_xref="TAIR:AT1G12260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4M8" /translation="MNTFTHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDL YKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYS RHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPQEEGWVVCRVFKKRMTT VRKVGEYDSPCWYDDQVSFMQDLDSPRRIPQPYASYHHHYPCKQELELQYNLPHDPFL QLPQLESPKVPQSAASVSCNSVVPYGYDRNNGSTLQSSTLTQEEHMQPGHQQNLNSLY NNSEQAVDQVTDWRVLDKFVASQLSHEEASKENNYPNAATSLQVAEQMNLLASESKRP EIAHQEYASTSTSSCQIDLWK" mobile_element 30960518..30960844 /note="source:scaffold_10_CACTA_0130 6253 6572" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30960841..30961314 /note="source:scaffold_10_CACTA_0130 8380 8986" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30961315..30961654) /note="source:CACAO_on_E565_scaffold_5 757 1128" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30961655..30962134 /note="source:scaffold_10_CACTA_0130 8987 9604" /mobile_element_type="transposon:TIR/CACTA" gene 30966418..30967253 /locus_tag="TCM_016036" /note="dbxref CacaoGD:Thecc1EG016036" mRNA 30966418..30967253 /locus_tag="TCM_016036" /product="SAUR family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene32255" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005545t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11260.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00001c00005" CDS 30966680..30967171 /locus_tag="TCM_016036" /note="paralog of Thecc1EG005545t1" /codon_start=1 /product="SAUR family protein, putative" /protein_id="EOY24431.1" /db_xref="Phytozome:POPTR_0003s11260.1" /db_xref="TAIR:AT4G12410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVQ9" /translation="MKKIRGFKLGRKLVKVFKWIIRPRRRIYRNSFLSPPTRRYNPLS RICSFARFLRRGTKGLCNSNADPGFIQLGEEGVKRVGVPKGHLAVYVGDSEGDTTRVV VPVIYFNHPLFAELLKEAERVYGYNHSGGITLPCGISEFEKVKMRIADWEHCRRKPHR RYL" mobile_element 30969329..30969411 /note="source:scaffold_4_CACTA_0511 7090 7179" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30969811..30969920 /note="source:MITE_Tourist_3 181 309" /mobile_element_type="transposon:TIR/MITE" gene complement(30970834..30976823) /locus_tag="TCM_016037" /note="dbxref CacaoGD:Thecc1EG016037" mRNA complement(join(30970834..30971598,30971686..30971889, 30972307..30972510,30972623..30972671,30972967..30973166, 30973256..30973341,30973686..30973842,30975196..30975360, 30975692..30976044,30976257..30976823)) /locus_tag="TCM_016037" /product="Beta vacuolar processing enzyme" /inference="alignment:exonerate- protein:2:ricco:30190.m010992" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037257t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11280.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02690t00001" CDS complement(join(30971416..30971598,30971686..30971889, 30972307..30972510,30972623..30972671,30972967..30973166, 30973256..30973341,30973686..30973842,30975196..30975360, 30975692..30976044,30976257..30976287)) /locus_tag="TCM_016037" /note="paralog of Thecc1EG037257t1" /codon_start=1 /product="Beta vacuolar processing enzyme" /protein_id="EOY24432.1" /db_xref="Phytozome:POPTR_0003s11280.1" /db_xref="TAIR:AT1G62710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HHS3" /translation="METATLSLTRNSLPDSILHPCFPFKHQFPLPFVSFSSYLFTAFL NWIHYLLVISMAKQDSVFIKYLSLLLVLLLLFEAGRAARLNQWESGIRLSTDIDEPQD VDDQQLGTRWAVLVAGSSGYANYRHQADVCHAYQLLRKGGLKEENIVVFMYDDIAMHK LNPRPEVIINHPKGDDVYAGVPKDYTGVHVTAANLYAVLLGNNSALSGGSGKVVDSKP NDRIFLFYSDHGGPGVLGMPNLPFLYAMDFLDVLKKKHAAGSYKEMVIYVEACESGSV FEGIMPKDLNIYVTTASNAQESSWGTYCPGMEPSPPPEYTTCLGDLYSVAWMEDSETH NLKRETVKQQYETVRERTSNFNSYTLGGSHVMEYGNASIKAEKLCSYQGFDPSSENFP PNELTHMEAVNQRDADILFLWHMYKNSEDGSKKTEILRQITETIRHRIHLDGSIDLIG TLLYGPAKGSGILNSVREPGLPLVDDWQCLKSMVRLFETHCGLLTQYGMKHMRAFANL CNSGVSQSLMEQACVAACSGHDTRQWHPSNQGYSA" gene complement(30976950..30979302) /locus_tag="TCM_016038" /note="dbxref CacaoGD:Thecc1EG016038" mRNA complement(join(30976950..30978425,30979211..30979302)) /locus_tag="TCM_016038" /product="Terpenoid synthases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010993" /inference="similar to AA sequence:Phytozome:POPTR_0001s07730.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10167t00001" CDS complement(30977499..30978404) /locus_tag="TCM_016038" /codon_start=1 /product="Terpenoid synthases superfamily protein" /protein_id="EOY24433.1" /db_xref="Phytozome:POPTR_0001s07730.1" /db_xref="TAIR:AT1G62730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GX86" /translation="MNGVSSSLRAAFSYCVQQVRCYDYHHYLCLLELPPNMRKAAFAL RAFNVETARAMDVASDPKIGLMRLVWWQEAIDKIYANKLIEHPTAQALSSVISESKIS KAWLKRLVEARINDASREATDLPESIEDLEKYAENTASTLLYMTLQAGGIRSTAVDHA ASHVGKASGLLLLLKSLPYHASRNRHFSYIPAKVAAKHGLLVKEGGRSEIHLDSREGL CDAVFEIASAANAHLLKARELADAVPSEARKALLPAVPAQVLLDSLSRVQFDVFDSRL ARGILGKPPLSFQLKLKWYSWRGKY" gene complement(30979391..30983411) /locus_tag="TCM_016039" /note="dbxref CacaoGD:Thecc1EG016039" mRNA complement(join(30979391..30980126,30980232..30980291, 30980382..30980448,30980539..30980762,30980857..30980997, 30981127..30981459,30982274..30983411)) /locus_tag="TCM_016039" /product="Stress-inducible protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07750.1" /inference="similar to AA sequence:ricco:30190.m010995" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01581t00002" mRNA complement(join(30979512..30980126,30980232..30980294, 30980382..30980448,30980539..30980762,30980857..30980942, 30981171..30981459,30982274..30983343)) /locus_tag="TCM_016039" /product="Stress-inducible protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07750.1" /inference="similar to AA sequence:ricco:30190.m010995" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10261t1; inference alignment:Newbler:10:TSA:cgbaB_g01581t00002" mRNA complement(join(30979557..30979915,30980011..30980126, 30980232..30980291,30980382..30980448,30980539..30980762, 30980857..30980942,30981171..30981459,30982274..30983354)) /locus_tag="TCM_016039" /product="Stress-inducible protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07750.1" /inference="similar to AA sequence:ricco:30190.m010995" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01581t00002; inference alignment:Newbler:10:TSA:cgbaB_g01581t00002" CDS complement(join(30980013..30980126,30980232..30980291, 30980382..30980448,30980539..30980762,30980857..30980942, 30981171..30981459,30982274..30983182)) /locus_tag="TCM_016039" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m010995" /codon_start=1 /product="Stress-inducible protein, putative isoform 2" /protein_id="EOY24435.1" /db_xref="TAIR:AT4G12400.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNB6" /translation="MADEAKAKGNAAFSSGDFNTAIKHFTEAINLAPTNHVLYSNRSA ACASLHQYDAALSDAKKTVDLKPDWSKGYSRLGAAHLGLHQYQDAVSAYKKGLEIDPS NEALKSGLADAQSAATASASRARAAPPPSPFGDAFQGPEMWAKLTADPTTRVYLQQPD FVKAMQEIQRNPSKLNEHLKDQRVMQALGALLNVKFKAHGAGDDMEIPEADSPRPPPP SQPAKEEVKKPEPEPEPEPMEITEEEKEKKEKKEKALKEKETGNAAYKKKDFETAIQH YTKAMELDDEDISYLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRSDFKMVARALTR KGTALVKMAKCSKDYESAIETFQKALTEHRNPETLKKLNDAEKAKKDLEQQEYFDPKI ADEEREKGNECFKQQKYPEAVKHYTESLRRNPKDPKAYSNRAACYTKLGALPEGLKDA EKCIELDPTFSKGYTRKGAVQFFMKEYEKALDTYQEGLKHDPNNQELLDGARKCVQQI NKASRGDLSPEELKERQAKAMQDPEIQNILSDPVMRQVLIDFQENPKAAQEHMKNPMV MNKIQKLVTAGIVQIR" CDS complement(join(30980013..30980126,30980232..30980294, 30980382..30980448,30980539..30980762,30980857..30980942, 30981171..30981459,30982274..30983182)) /locus_tag="TCM_016039" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m010995" /codon_start=1 /product="Stress-inducible protein, putative isoform 3" /protein_id="EOY24436.1" /db_xref="TAIR:AT4G12400.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNB6" /translation="MADEAKAKGNAAFSSGDFNTAIKHFTEAINLAPTNHVLYSNRSA ACASLHQYDAALSDAKKTVDLKPDWSKGYSRLGAAHLGLHQYQDAVSAYKKGLEIDPS NEALKSGLADAQSAATASASRARAAPPPSPFGDAFQGPEMWAKLTADPTTRVYLQQPD FVKAMQEIQRNPSKLNEHLKDQRVMQALGALLNVKFKAHGAGDDMEIPEADSPRPPPP SQPAKEEVKKPEPEPEPEPMEITEEEKEKKEKKEKALKEKETGNAAYKKKDFETAIQH YTKAMELDDEDISYLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRSDFKMVARALTR KGTALVKMAKCSKDYESAIETFQKALTEHRNPETLKKLNDAEKAKKDLEQQEYFDPKI ADEEREKGNECFKQQKYPEAVKHYTESLRRNPKDPKAYSNRAACYTKLGALPEGLKDA EKCIELDPTFSKGYTRKGAVQFFMKEYEKALDTYQEGLKHDPNNQELLDGARKCVQQI NKASRGDLSPEELKERQQAKAMQDPEIQNILSDPVMRQVLIDFQENPKAAQEHMKNPM VMNKIQKLVTAGIVQIR" CDS complement(join(30980013..30980126,30980232..30980291, 30980382..30980448,30980539..30980762,30980857..30980997, 30981127..30981459,30982274..30983182)) /locus_tag="TCM_016039" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m010995" /codon_start=1 /product="Stress-inducible protein, putative isoform 1" /protein_id="EOY24434.1" /db_xref="TAIR:AT4G12400.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNB6" /translation="MADEAKAKGNAAFSSGDFNTAIKHFTEAINLAPTNHVLYSNRSA ACASLHQYDAALSDAKKTVDLKPDWSKGYSRLGAAHLGLHQYQDAVSAYKKGLEIDPS NEALKSGLADAQSAATASASRARAAPPPSPFGDAFQGPEMWAKLTADPTTRVYLQQPD FVKAMQEIQRNPSKLNEHLKDQRVMQALGALLNVKFKAHGAGDDMEIPEADSPRPPPP SQPAKEEVKKPEPEPEPEPMEITEEEKEKKEKKEKALKEKETGNAAYKKKDFETAIQH YTKAMELDDEDISYLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRSDFKMVARALTR KGTALVKMAKCSKDYESAIETFQKALTEHRNPETLKKLNDAEKAKKDLEQQEYFDPKI ADEEREKGILYSFLFSFCRHCHKNSSPLSCSLADWTNIYAGNECFKQQKYPEAVKHYT ESLRRNPKDPKAYSNRAACYTKLGALPEGLKDAEKCIELDPTFSKGYTRKGAVQFFMK EYEKALDTYQEGLKHDPNNQELLDGARKCVQQINKASRGDLSPEELKERQAKAMQDPE IQNILSDPVMRQVLIDFQENPKAAQEHMKNPMVMNKIQKLVTAGIVQIR" gene complement(30983459..30992693) /locus_tag="TCM_016040" /note="dbxref CacaoGD:Thecc1EG016040" mRNA complement(join(30983459..30984021,30984424..30984936, 30985258..30986672,30987363..30988166,30992239..30992693)) /locus_tag="TCM_016040" /product="Translation elongation factor EFG/EF2 protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010996" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005628t2" /inference="similar to AA sequence:ricco:30190.m010996" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07152t00001" CDS complement(join(30983854..30984021,30984424..30984936, 30985258..30986672,30987363..30987618)) /locus_tag="TCM_016040" /note="dbxref ricco:30190.m010996; paralog of Thecc1EG005628t2" /codon_start=1 /product="Translation elongation factor EFG/EF2 protein" /protein_id="EOY24437.1" /db_xref="TAIR:AT1G62750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XQQ7" /translation="MAAETALRITGSSSTVCNLNGSQRRPTPLSSPTRFLGLPPRASS SSVSSSLSHFLGSVRIGSRLPISRHQQGKRRNFSVFAMAAEETKRAVPLKDYRNIGIM AHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWKN HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC FVNKMDRLGANFFRTRDMIVTNLGAKPLVIQLPVGAEDNFQGVVDLVKMQAVLWSGEE LGAKFVYDDIPANLQELAEEYRSQMIETLVELDDQAMENYLEGVEPDEETIKKLIRKG TIGSSFVPVLCGSAFKNKGVQPLLDAVMDYLPSPLDLPAMKGTDPENPEVTIERKASD DVPFSGLAFKIMTDPFVGSLTFVRVYAGKLSAGSYALNANKGKKERIGRLLEMHANSR EDVKVAMAGDIVALAGLKDTITGETLCDPDHPIVLERMDFPDPVIKVAIEPKTKADVD KMATGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQ VNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEY IPGVMKGLEECMNNGVLAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFREGIRK AGPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMF QYVSTLRGMTKGRASYTMQLAKFDVVPQHIQNELASKGQEVAA" gene complement(30992711..30993774) /locus_tag="TCM_016041" /note="dbxref CacaoGD:Thecc1EG016041" mRNA complement(30992711..30993774) /locus_tag="TCM_016041" /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400019108" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016042t1" /inference="similar to AA sequence:ricco:30147.m014204" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9971t1" CDS complement(30993092..30993700) /locus_tag="TCM_016041" /note="dbxref ricco:30147.m014204; paralog of Thecc1EG016042t1" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /protein_id="EOY24438.1" /db_xref="TAIR:AT5G62360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CBR6" /translation="MASLYASIAVLAALFQLTIHLNSCLAARTNLSKEANTQFIKTSC SSTVYPDVCFTTLSSYASEIQASPKLLASTALSVTLNATRSASTTMIKRSKSQGMKPR EAEALSDCMEELRDSVYELQRSVGEMDQPGGKNFGLQMNDIETWVSAALTDEHTCMDG FSGKAMNGNVKNSVRSQIVKVAHMTSNALALVNSYAAAVQNP" gene complement(30996346..30997273) /locus_tag="TCM_016042" /note="dbxref CacaoGD:Thecc1EG016042" mRNA complement(30996346..30997273) /locus_tag="TCM_016042" /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014203" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016041t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018608001" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9973t1" CDS complement(30996634..30997236) /locus_tag="TCM_016042" /note="paralog of Thecc1EG016041t1" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /protein_id="EOY24439.1" /db_xref="Phytozome:GSVIVT01018608001" /db_xref="TAIR:AT5G62360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CBR6" /translation="MASSYFSIAAILILILFTTHLNFCIAARKILSSETDTEFIKTSC GATSYPDLCFTTFSSYASEIQASPKILASKSLSLTLNTTLSASKFLTELSKSQDLEPQ EAAALQDCVEEISDSVDELKRSIGEIDEIEGKSFAFRMSDIETWVSAALTDEDTCTDG FSENATDGDVKATVRSQIEKVAHMTSIALAFVNRYAGTKN" mobile_element 30997676..30998414 /note="source:CACAO_Mariner_E38_scaffold_2 1314 2091" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(31000147..31000232) /note="source:CACAO_M_E34409_F73_scaffold_5 2269 2333" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31001204..31001882) /locus_tag="TCM_016043" /note="dbxref CacaoGD:Thecc1EG016043" mRNA complement(31001204..31001882) /locus_tag="TCM_016043" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS complement(31001391..31001831) /locus_tag="TCM_016043" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24440.1" /translation="MVVFGVYRLISFFFFGYELMRSFSYIKSSIKTHSIEKEREMASL HFSIAALFLILIQFHVSTLLNSCKAARKILSTETNTEFIRTSCGATTYPDLCCTTFSS AMHPKSKPAPRSRSRLTPHVLLQQRSYRTLQKPAAKAQIDCSHA" gene complement(31003499..31004394) /locus_tag="TCM_016044" /note="dbxref CacaoGD:Thecc1EG016044" mRNA complement(31003499..31004394) /locus_tag="TCM_016044" /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016042t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400021265" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(31003772..31004377) /locus_tag="TCM_016044" /note="paralog of Thecc1EG016042t1" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /protein_id="EOY24441.1" /db_xref="Phytozome:PGSC0003DMP400021265" /db_xref="TAIR:AT1G62760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CBR6" /translation="MAAGSYFSVAALAILIQLTINLNLCLAAAPIHPSGRNTRFIRTS CRATLYPNLCFTTFSRYTTRIRGSPRLLASTALSMAFNTTRSTTKAFINLSKHRGLER SEAAALRDCVEQLGDSVDELKDSISAMSPPRRGDDFRSRMSDLQTWVSAALTNDDTCM GGFPRKAMKRDFKTVRRQVVKVAHLTSIALAFVNRYAAATH" gene complement(31006670..31010942) /locus_tag="TCM_016045" /note="dbxref CacaoGD:Thecc1EG016045" mRNA complement(join(31006670..31007053,31007290..31007411, 31007532..31007638,31007752..31007830,31007937..31008026, 31008133..31008396,31008482..31008959,31010209..31010942)) /locus_tag="TCM_016045" /product="Cytochrome P450, family 88, subfamily A, polypeptide 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29709.m001228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042332t2" /inference="similar to AA sequence:ricco:29709.m001228" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02391t00001" mRNA complement(join(31006787..31007046,31007286..31007411, 31007532..31007621,31007752..31007830,31007937..31008026, 31008133..31008396,31008482..31008959,31010209..31010664)) /locus_tag="TCM_016045" /product="Cytochrome P450, family 88, subfamily A, polypeptide 3 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29709.m001228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042332t2" /inference="similar to AA sequence:ricco:29709.m001228" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc535t4; inference alignment:Newbler:10:TSA:cgbaP1_g02391t00001" mRNA complement(join(31006787..31007053,31007290..31007411, 31007532..31007687,31007917..31008026,31008133..31008396, 31008482..31008959,31010209..31010664)) /locus_tag="TCM_016045" /product="Cytochrome P450, family 88, subfamily A, polypeptide 3 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29709.m001228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042332t2" /inference="similar to AA sequence:ricco:29709.m001228" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc551t1; inference alignment:Newbler:10:TSA:cgbaP1_g02391t00001" CDS complement(join(31006927..31007053,31007290..31007411, 31007532..31007638,31007752..31007830,31007937..31008026, 31008133..31008396,31008482..31008959,31010209..31010441)) /locus_tag="TCM_016045" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29709.m001228; paralog of Thecc1EG042332t2" /codon_start=1 /product="Cytochrome P450, family 88, subfamily A, polypeptide 3 isoform 1" /protein_id="EOY24442.1" /db_xref="TAIR:AT1G05160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23051" /translation="MEIGSMWMVLLAILAGLASVKWVLERVNWWLYESQLGDKQFSLP PGDLGWPFIGNMWSFLRAFKSDDPDSFIRSFVSRFGHIGIYKAFMFGNPSVIVTMPET CKRVLNDDDAFKPGWPTATVELIGKKSFIGISYEEHKRLRRLTAAPVNGHEALSLYIQ YIEENVISALDKWSNMGEIEFLTELRKLTFRIIMYIFLSSESEEEMEALEREYTTLNY GVRAMAINIPGFAYYKALKARKNLVAVFQSIVNKRRKQKKINNSTKKKDMLDALIDVK DEKGETLDDEEIIDIMLMYLNAGHESSGHTIMWATIFLQRHPEFLEKAKAEQERIIKK RPPTQKGLSLKDIREMDYLSKVIDETLRLVTFSLMVFREAITDVNISGYTIPKGWKVL TWFRSVHLDPEIYTNPKEFNPSRWDDYAAKAGTFLPFGAGSRLCPGNDLAKLEIAIFL HHFLLNYQLERLNPESKIRYLPHSRPADNCMARIKKHPVSLPKEEKWNI" mobile_element 31007526..31007591 /note="source:CACAO_Mariner_E265_scaffold_10 3852 3917" /mobile_element_type="transposon:TIR/Tc1-Mariner" CDS complement(join(31007575..31007621,31007752..31007830, 31007937..31008026,31008133..31008396,31008482..31008959, 31010209..31010441)) /locus_tag="TCM_016045" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29709.m001228; paralog of Thecc1EG042332t2" /codon_start=1 /product="Cytochrome P450, family 88, subfamily A, polypeptide 3 isoform 2" /protein_id="EOY24443.1" /db_xref="TAIR:AT1G05160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23051" /translation="MEIGSMWMVLLAILAGLASVKWVLERVNWWLYESQLGDKQFSLP PGDLGWPFIGNMWSFLRAFKSDDPDSFIRSFVSRFGHIGIYKAFMFGNPSVIVTMPET CKRVLNDDDAFKPGWPTATVELIGKKSFIGISYEEHKRLRRLTAAPVNGHEALSLYIQ YIEENVISALDKWSNMGEIEFLTELRKLTFRIIMYIFLSSESEEEMEALEREYTTLNY GVRAMAINIPGFAYYKALKARKNLVAVFQSIVNKRRKQKKINNSTKKKDMLDALIDVK DEKGETLDDEEIIDIMLMYLNAGHESSGHTIMWATIFLQRHPEFLEKAKAEQERIIKK RPPTQKGLSLKDIREMDYLSKVIDETLRLVTFSLMVFREAITDVNISGMESSNLVQKR SLGS" mRNA complement(join(31007594..31007621,31007752..31008026, 31008133..31008396,31008482..31008959,31010209..31010664)) /locus_tag="TCM_016045" /product="Cytochrome P450, family 88, subfamily A, polypeptide 3 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29709.m001228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042332t2" /inference="similar to AA sequence:ricco:29709.m001228" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc551t4; alternateUTRof:Thecc1EG016045t3; inference alignment:Newbler:10:TSA:cgbaP1_g02391t00001" CDS complement(join(31007687,31007917..31008026, 31008133..31008396,31008482..31008959,31010209..31010441)) /locus_tag="TCM_016045" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29709.m001228; paralog of Thecc1EG042332t2" /codon_start=1 /product="Cytochrome P450, family 88, subfamily A, polypeptide 3 isoform 3" /protein_id="EOY24444.1" /db_xref="TAIR:AT1G05160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23051" /translation="MEIGSMWMVLLAILAGLASVKWVLERVNWWLYESQLGDKQFSLP PGDLGWPFIGNMWSFLRAFKSDDPDSFIRSFVSRFGHIGIYKAFMFGNPSVIVTMPET CKRVLNDDDAFKPGWPTATVELIGKKSFIGISYEEHKRLRRLTAAPVNGHEALSLYIQ YIEENVISALDKWSNMGEIEFLTELRKLTFRIIMYIFLSSESEEEMEALEREYTTLNY GVRAMAINIPGFAYYKALKARKNLVAVFQSIVNKRRKQKKINNSTKKKDMLDALIDVK DEKGETLDDEEIIDIMLMYLNAGHESSGHTIMWATIFLQRHPEFLEKAKAEQERIIKK RPPTQKGLSLKDIREMDYLSKVPLCYI" mobile_element 31007914..31012837 /note="source:scaffold_3_CACTA_0398 1 4924" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(31007916..31008026,31008133..31008396, 31008482..31008959,31010209..31010441)) /locus_tag="TCM_016045" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29709.m001228; paralog of Thecc1EG042332t2" /codon_start=1 /product="Cytochrome P450, family 88, subfamily A, polypeptide 3 isoform 3" /protein_id="EOY24445.1" /db_xref="TAIR:AT1G05160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23051" /translation="MEIGSMWMVLLAILAGLASVKWVLERVNWWLYESQLGDKQFSLP PGDLGWPFIGNMWSFLRAFKSDDPDSFIRSFVSRFGHIGIYKAFMFGNPSVIVTMPET CKRVLNDDDAFKPGWPTATVELIGKKSFIGISYEEHKRLRRLTAAPVNGHEALSLYIQ YIEENVISALDKWSNMGEIEFLTELRKLTFRIIMYIFLSSESEEEMEALEREYTTLNY GVRAMAINIPGFAYYKALKARKNLVAVFQSIVNKRRKQKKINNSTKKKDMLDALIDVK DEKGETLDDEEIIDIMLMYLNAGHESSGHTIMWATIFLQRHPEFLEKAKAEQERIIKK RPPTQKGLSLKDIREMDYLSKVPLCYI" gene 31013255..31016130 /locus_tag="TCM_016046" /note="dbxref CacaoGD:Thecc1EG016046" mRNA join(31013255..31013383,31013519..31013607, 31013734..31013828,31013930..31014001,31014298..31014381, 31014544..31014582,31014674..31014756,31014954..31015016, 31015719..31016120) /locus_tag="TCM_016046" /product="Transcription regulatory protein SNF5 (BSH), putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g17760.1" /inference="similar to AA sequence:Phytozome:Glyma13g17760.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10033t3; inference alignment:Newbler:10:TSA:cgbaB_g00467t00001" mRNA join(31013302..31013383,31013519..31013607, 31013734..31013828,31013930..31014001,31014106..31014153, 31014298..31014381,31014544..31014582,31014674..31014756, 31014954..31015016,31015719..31016116) /locus_tag="TCM_016046" /product="Transcription regulatory protein SNF5 (BSH), putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g17760.1" /inference="similar to AA sequence:Phytozome:Glyma13g17760.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00467t00001" CDS join(31013334..31013383,31013519..31013607, 31013734..31013828,31013930..31014001,31014106..31014153, 31014298..31014381,31014544..31014582,31014674..31014756, 31014954..31015016,31015719..31015818) /locus_tag="TCM_016046" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transcription regulatory protein SNF5 (BSH), putative isoform 1" /protein_id="EOY24446.1" /db_xref="Phytozome:Glyma13g17760.1" /db_xref="TAIR:AT3G17590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93045" /translation="MKAPASAPWKAPLKFRMPTAENLVPIRLDIEVDGQRYKDAFTWN PSDPDSEVVMFARRTVKDLKLAPGFIPQIVQSIQSQLADFRSYEGQDMYAGDKIVPIK LDLRVNHTVIRDQFLWDLNNFESDPEEFSRTLCKDLGIEDPEVGPAIAYAIREQLYEI AIQNVTSARENRISKKGRRGAEHFPPSKAGGAALDLIKLFSFRSSVVRKRKEWGYYKP TLDLLSNEDVDALETKEERSGR" CDS join(31013334..31013383,31013519..31013607, 31013734..31013828,31013930..31014001,31014298..31014381, 31014544..31014582,31014674..31014756,31014954..31015016, 31015719..31015818) /locus_tag="TCM_016046" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Transcription regulatory protein SNF5 (BSH), putative isoform 4" /protein_id="EOY24449.1" /db_xref="Phytozome:Glyma13g17760.1" /db_xref="TAIR:AT3G17590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93045" /translation="MKAPASAPWKAPLKFRMPTAENLVPIRLDIEVDGQRYKDAFTWN PSDPDSEVVMFARRTVKDLKLAPGFIPQIVQSIQSQLADFRSYEGQDMYAGDKIVPIK DLNNFESDPEEFSRTLCKDLGIEDPEVGPAIAYAIREQLYEIAIQNVTSARENRISKK GRRGAEHFPPSKAGGAALDLIKLFSFRSSVVRKRKEWGYYKPTLDLLSNEDVDALETK EERSGR" mRNA join(<31013340..31013383,31013527..31013607, 31013734..31013828,31013930..31014001,31014106..31014153, 31014298..31014381,31014544..31014582,31014674..31014756, 31014954..31015016,31015719..31016130) /locus_tag="TCM_016046" /product="Transcription regulatory protein SNF5 (BSH), putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g17760.1" /inference="similar to AA sequence:Phytozome:Glyma13g17760.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04158t00001; inference alignment:Newbler:10:TSA:cgbaB_g00467t00001" CDS join(<31013341..31013383,31013527..31013607, 31013734..31013828,31013930..31014001,31014106..31014153, 31014298..31014381,31014544..31014582,31014674..31014756, 31014954..31015016,31015719..31015818) /locus_tag="TCM_016046" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transcription regulatory protein SNF5 (BSH), putative isoform 2" /protein_id="EOY24447.1" /db_xref="Phytozome:Glyma13g17760.1" /db_xref="TAIR:AT3G17590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93045" /translation="RRHQPLGKPLSSSGSENLVPIRLDIEVDGQRYKDAFTWNPSDPD SEVVMFARRTVKDLKLAPGFIPQIVQSIQSQLADFRSYEGQDMYAGDKIVPIKLDLRV NHTVIRDQFLWDLNNFESDPEEFSRTLCKDLGIEDPEVGPAIAYAIREQLYEIAIQNV TSARENRISKKGRRGAEHFPPSKAGGAALDLIKLFSFRSSVVRKRKEWGYYKPTLDLL SNEDVDALETKEERSGR" mRNA join(<31013369..31013383,31013527..31013607, 31013734..31013828,31013930..31014001,31014106..31014153, 31014298..31014381,31014544..31014582,31014674..31014756, 31014954..31015006,31015719..31016110) /locus_tag="TCM_016046" /product="Transcription regulatory protein SNF5 (BSH), putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g17760.1" /inference="similar to AA sequence:Phytozome:GSVIVT01017710001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00255t00004; inference alignment:Newbler:10:TSA:cgbaB_g00467t00001" CDS join(<31013371..31013383,31013527..31013607, 31013734..31013828,31013930..31014001,31014106..31014153, 31014298..31014381,31014544..31014582,31014674..31014756, 31014954..31015006,31015719..31015822) /locus_tag="TCM_016046" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transcription regulatory protein SNF5 (BSH), putative isoform 3" /protein_id="EOY24448.1" /db_xref="Phytozome:GSVIVT01017710001" /db_xref="TAIR:AT3G17590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93045" /translation="SSSGSENLVPIRLDIEVDGQRYKDAFTWNPSDPDSEVVMFARRT VKDLKLAPGFIPQIVQSIQSQLADFRSYEGQDMYAGDKIVPIKLDLRVNHTVIRDQFL WDLNNFESDPEEFSRTLCKDLGIEDPEVGPAIAYAIREQLYEIAIQNVTSARENRISK KGRRGAEHFPPSKAGGAALDLIKLFSFRSRKERNGVIINLLSIFYQMRTWMPLKPKKR GAVGK" mRNA join(<31013519..31013607,31013740..31013828, 31013930..31014001,31014106..31014153,31014298..31014381, 31014544..31014582,31014674..31014756,31014954..31015016, 31015719..>31015742) /locus_tag="TCM_016046" /product="Transcription regulatory protein SNF5 (BSH), putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g17760.1" /inference="similar to AA sequence:Phytozome:GSVIVT01017710001" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1436t3; inference alignment:Newbler:10:TSA:cgbaB_g00467t00001" CDS join(<31013520..31013607,31013740..31013828, 31013930..31014001,31014106..31014153,31014298..31014381, 31014544..31014582,31014674..31014756,31014954..31015016, 31015719..>31015740) /locus_tag="TCM_016046" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Transcription regulatory protein SNF5 (BSH), putative isoform 5" /protein_id="EOY24450.1" /db_xref="Phytozome:GSVIVT01017710001" /db_xref="TAIR:AT3G17590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93045" /translation="PTAENLVPIRLDIEVDGQRYKDAFTWNPSDSEVVMFARRTVKDL KLAPGFIPQIVQSIQSQLADFRSYEGQDMYAGDKIVPIKLDLRVNHTVIRDQFLWDLN NFESDPEEFSRTLCKDLGIEDPEVGPAIAYAIREQLYEIAIQNVTSARENRISKKGRR GAEHFPPSKAGGAALDLIKLFSFRSSVVRKRKEWGY" mobile_element complement(31016541..31017019) /note="source:MITE_Unknow_3_4 2 481" /mobile_element_type="transposon:TIR/MITE" gene complement(31017013..31017912) /locus_tag="TCM_016047" /note="dbxref CacaoGD:Thecc1EG016047" mRNA complement(31017013..31017912) /locus_tag="TCM_016047" /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016048t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018606001" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage" mobile_element 31017107..31017190 /note="source:scaffold_5_CACTA_0584 1911 1973" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31017138..31017210) /note="source:CACAO_M_S_E32752_F12_scaffold_4 4105 4185" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(31017258..31017875) /locus_tag="TCM_016047" /note="paralog of Thecc1EG016048t1" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /protein_id="EOY24451.1" /db_xref="Phytozome:GSVIVT01018606001" /db_xref="TAIR:AT5G62360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CBR6" /translation="MARTFSIHALIILLIALQFSSYFNTCSASRKSHSNEYLTNQEYI KNSCRGTTYPKLCLKSLARHASKIKADPKLLAHAALNTTFFAAKATSKLLAHTSKVHG LRPNEAAAMVDCIADVSDSVQKLQKSIKEMDRAEGSDLQVQMNDIQMWVNTALDEEET CMNALANKAIRSKVKRGVRRRVVKVALLTSNALNLVKSFALAQKN" gene complement(31019173..31020297) /locus_tag="TCM_016048" /note="dbxref CacaoGD:Thecc1EG016048" mRNA complement(31019173..31020297) /locus_tag="TCM_016048" /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014946t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018606001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9967t1" CDS complement(31019677..31020291) /locus_tag="TCM_016048" /note="paralog of Thecc1EG014946t1" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /protein_id="EOY24452.1" /db_xref="Phytozome:GSVIVT01018606001" /db_xref="TAIR:AT5G62360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3P0" /translation="MEGSSSRHGLAILLIILQFTTYTALSSADTPFHSQRNIEYIKSS CSTTTYPRLCYRSLSIYASKINTSPRLLVHTALNVTLKASKSTSRLMIKISRIHGLRP RVAAAMADCIEVMGDSVDELQQSIGELGHIRSSNFSLTMSDIQTWVSAALTDEDTCMD GFAGKAMNGYAKTMVRKRIVKIAHLTSNALALINNYASTESNLP" gene complement(31024266..31025192) /locus_tag="TCM_016049" /note="dbxref CacaoGD:Thecc1EG016049" mRNA complement(31024266..31025192) /locus_tag="TCM_016049" /product="Plant invertase/pectin methylesterase inhibitor superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014952t1" /inference="similar to AA sequence:ricco:30190.m011000" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9969t1" CDS complement(31024538..31025158) /locus_tag="TCM_016049" /note="dbxref ricco:30190.m011000; paralog of Thecc1EG014952t1" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily protein" /protein_id="EOY24453.1" /db_xref="TAIR:AT1G62770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVR4" /translation="MARLAFSILVLFFALYMTGIAASASTRNSSPAAYIVASCKATRY PALCVQCLSGYASEIRQDEQHLARTALSVSLSKAQSAAAFVAKMTQVRGIKPRERQAV KDCIENMGDGVDRLSKSVKELSHVGRAVGQDFMWHMSNVQTWVSAALTDENTCLDGFA GRVMDGNIKTAIRRRVVNVAQVTSNALALVNRFAARHRAAAPTEER" gene complement(31026142..31029270) /locus_tag="TCM_016050" /note="dbxref CacaoGD:Thecc1EG016050" mRNA complement(join(31026142..31026437,31027792..31027881, 31027966..31028051,31028137..31028197,31028287..31028359, 31028605..31028702,31028808..31028954,31029061..31029270)) /locus_tag="TCM_016050" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G62780.1" /inference="similar to AA sequence:ricco:30190.m011001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03783t00001" CDS complement(join(31026375..31026437,31027792..31027881, 31027966..31028051,31028137..31028197,31028287..31028359, 31028605..31028702,31028808..31028954,31029061..31029165)) /locus_tag="TCM_016050" /note="dbxref ricco:30190.m011001" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24454.1" /db_xref="TAIR:AT1G62780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2D603" /translation="MATLSIGIATFAATGFRATTVKRTDFRLKISCVQWDPDGIFGPP QTGHLARLEFKRRLERDAGARDAFEQHLREEKERRLALRQSREIPDTPAELIEYFLDT EAQEIEFEIARLRQRLDEEFFSHLKFEIGQIRFAVSKTEDMEDKLIELEALQKALQEG IEAYDKMQADLITAKKSLTKILTSKDIKATLLEMVEGNELNRSLLTLLDENIANAHRG NQKQAAAFMEKVRAAVLKYLTV" gene 31032322..31035067 /locus_tag="TCM_016051" /note="dbxref CacaoGD:Thecc1EG016051" mRNA join(31032322..31032685,31032955..31032987, 31034794..31035067) /locus_tag="TCM_016051" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G62790.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07810.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15422t00001" CDS join(31032385..31032685,31032955..31032987, 31034794..31034888) /locus_tag="TCM_016051" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative" /protein_id="EOY24455.1" /db_xref="Phytozome:POPTR_0001s07810.1" /db_xref="TAIR:AT1G62790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NLF7" /translation="MAKLLIMTVLVILGTVATVTDAQAACASKLTPCFPFLNNATAQP TADCCNPIKDTVANDLECLCNLYNDPNLLSSLNITVAAALRISRECGVTTDLSACNAT SPTSAPSPPGQSGGDNGGADRIALTGITTLLLSLVSIALY" mobile_element complement(31033888..31033955) /note="source:CACAO_PIF_E144_scaffold_10 3591 3658" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 31034161..>31034510 /locus_tag="TCM_016052" /note="dbxref CacaoGD:Thecc1EG016052" mRNA 31034161..>31034510 /locus_tag="TCM_016052" /product="Translationally-controlled tumor protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g29240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021217t1" /inference="similar to AA sequence:Phytozome:Glyma15g15910.1" /note="quality class is strongpartial, express is strong, homology is paralog strong, intron is none, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc791t6_C2" CDS 31034302..>31034508 /locus_tag="TCM_016052" /note="paralog of Thecc1EG021217t1" /codon_start=1 /product="Translationally-controlled tumor protein" /protein_id="EOY24456.1" /db_xref="Phytozome:Glyma15g15910.1" /translation="MTPKLEGEKGETFKKHIEGATKFLLSKLKDLQFFVGESMHDDGC LMFAYSKDGAVDPTFLYFAYALKEV" gene 31035687..31040091 /locus_tag="TCM_016053" /note="dbxref CacaoGD:Thecc1EG016053" mRNA join(31035687..31036074,31036170..31036227, 31036317..31036469,31036563..31036650,31036725..31036805, 31036917..31036981,31037229..31037369,31037859..31037975, 31038059..31038250,31038484..31038541,31039588..31039704, 31039785..31040084) /locus_tag="TCM_016053" /product="HSP70-interacting protein 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012912t3" /inference="similar to AA sequence:Phytozome:POPTR_0003s11350.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10002t1" mRNA join(31035821..31036074,31036170..31036227, 31036317..31036469,31036563..31036650,31036725..31036805, 31036917..31036981,31037229..31037369,31037859..31037975, 31038059..31038250,31038484..31038541,31039588..31040091) /locus_tag="TCM_016053" /product="HSP70-interacting protein 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012912t3" /inference="similar to AA sequence:Phytozome:POPTR_0003s11350.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10213t2; alternateUTRof:Thecc1EG016053t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10002t1" CDS join(31035965..31036074,31036170..31036227, 31036317..31036469,31036563..31036650,31036725..31036805, 31036917..31036981,31037229..31037369,31037859..31037975, 31038059..31038250,31038484..31038541,31039588..31039685) /locus_tag="TCM_016053" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012912t3" /codon_start=1 /product="HSP70-interacting protein 1 isoform 1" /protein_id="EOY24457.1" /db_xref="Phytozome:POPTR_0003s11350.1" /db_xref="TAIR:AT4G22670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVR6" /translation="MDAAKLNELNKFIDQCKSNPSILSDPSLSFFRDYLESLGAKLPS SAYSHGASDSKSKSFVVEGSDDEMADEGEKLNVEEEEEEDEIVESDIELEGDTVEPDN DPPQKMGDPSVEVTDENRDAAQSAKAKAMDAISEGKLEEAIDSLTEAILLNPTSAIMY ATRASVYIKMKKPNAAIRDANAALEINPDSAKGYKSRGIARAMLGQWEDSAKDLHVAS KLDYDEEINNVLKQVEPNAQRIEEHRRKYDRLHKEREDRKVERERQHRRAEAQAAYEK AKKQEQSSSSRRPGGMPGGFPGGMPGGFPGGMPGGMPGEMPGSMPGGMPGNVDFSKIL NDPELMSAFSDPEVMAALQDVMKNPANLAKHQANPKVAPVIAKMMGKFAGPK" CDS join(31035965..31036074,31036170..31036227, 31036317..31036469,31036563..31036650,31036725..31036805, 31036917..31036981,31037229..31037369,31037859..31037975, 31038059..31038250,31038484..31038541,31039588..31039685) /locus_tag="TCM_016053" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012912t3" /codon_start=1 /product="HSP70-interacting protein 1 isoform 1" /protein_id="EOY24458.1" /db_xref="Phytozome:POPTR_0003s11350.1" /db_xref="TAIR:AT4G22670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVR6" /translation="MDAAKLNELNKFIDQCKSNPSILSDPSLSFFRDYLESLGAKLPS SAYSHGASDSKSKSFVVEGSDDEMADEGEKLNVEEEEEEDEIVESDIELEGDTVEPDN DPPQKMGDPSVEVTDENRDAAQSAKAKAMDAISEGKLEEAIDSLTEAILLNPTSAIMY ATRASVYIKMKKPNAAIRDANAALEINPDSAKGYKSRGIARAMLGQWEDSAKDLHVAS KLDYDEEINNVLKQVEPNAQRIEEHRRKYDRLHKEREDRKVERERQHRRAEAQAAYEK AKKQEQSSSSRRPGGMPGGFPGGMPGGFPGGMPGGMPGEMPGSMPGGMPGNVDFSKIL NDPELMSAFSDPEVMAALQDVMKNPANLAKHQANPKVAPVIAKMMGKFAGPK" mobile_element complement(31047123..31047288) /note="source:INTACT146F_F14_scaffold_2-int 13430 13528" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 31047199..31049326 /locus_tag="TCM_016054" /note="dbxref CacaoGD:Thecc1EG016054" mRNA join(31047199..31047654,31048360..31048894, 31049007..31049326) /locus_tag="TCM_016054" /product="Myb domain protein 42" /inference="alignment:exonerate- protein:2:ricco:30190.m011004" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014956t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07830.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06144t00001" CDS join(31047392..31047654,31048360..31048894, 31049007..31049066) /locus_tag="TCM_016054" /note="paralog of Thecc1EG014956t1" /codon_start=1 /product="Myb domain protein 42" /protein_id="EOY24459.1" /db_xref="Phytozome:POPTR_0001s07830.1" /db_xref="TAIR:AT4G12350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q50EX6" /translation="MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLA GLRRCGKSCRLRWTNYLRPDLKRGLLSEAEEQLVIDLHARLGNRWSKIAARLPGRTDN EIKNHWNTHIKKKLLKMGIDPVTHESLNKEAKAEESSSHADHSADNQNTTENDGIVNS SEDNSSTPTENCSSTTDDSNLLDSICNDESLLTSLLWMDEPPLVDASWNSVPAGETAC KGTSLPPWEDDCAWLPDCQDFGIHDFGFDCLNDIELNTMNALEMGDKTVLSVDAIFLY LGILLEGRR" gene 31051269..31052299 /locus_tag="TCM_016055" /note="dbxref CacaoGD:Thecc1EG016055" mRNA 31051269..31052299 /locus_tag="TCM_016055" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" CDS 31051549..31051773 /locus_tag="TCM_016055" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24460.1" /translation="MQTLLLPWEEGSAQCRACSEDGCISNKATNARMLSNQESRHMFQ SKTVLRKIVEDAMMTFSLDLPSLKIRDGNA" gene 31053191..31054955 /locus_tag="TCM_016056" /note="dbxref CacaoGD:Thecc1EG016056" mRNA join(31053191..31053374,31054148..31054955) /locus_tag="TCM_016056" /product="Copper ion binding, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400052244" /inference="similar to AA sequence:Phytozome:POPTR_0003s11370.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02514t00002" CDS 31054179..31054721 /locus_tag="TCM_016056" /codon_start=1 /product="Copper ion binding, putative" /protein_id="EOY24461.1" /db_xref="Phytozome:POPTR_0003s11370.1" /db_xref="TAIR:AT4G12340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6TIS3" /translation="MGDFSIQISTNLINRLTEDDEKLKKRTKKTKTRVPREPRRPQAK IDQKQISEDSEKQQGTTGTGWPVPPPLFLPVNQPPYPASAELDAIRSVVKESESVVEK LRKQEENMVQEVTQKAKDLHEKEFKLPDPKPMPCLVENNAWMACYKQNASDLTKCAPL AQNFADCARRVRQLAKSAEK" gene 31055062..31059442 /locus_tag="TCM_016057" /note="dbxref CacaoGD:Thecc1EG016057" mRNA join(31055062..31055548,31056650..31058321, 31058798..31059442) /locus_tag="TCM_016057" /product="HAT transposon superfamily" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007419001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015328t3" /inference="similar to AA sequence:Phytozome:GSVIVT01007419001" /note="quality class is strong-expresste, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g9986t1" CDS join(31056653..31058321,31058798..31059153) /locus_tag="TCM_016057" /note="paralog of Thecc1EG015328t3" /codon_start=1 /product="HAT transposon superfamily" /protein_id="EOY24462.1" /db_xref="Phytozome:GSVIVT01007419001" /db_xref="TAIR:AT1G79740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3N3" /translation="MVRGRDACWEHCVLVDATRQKVRCNYCHREFSGGVYRMKFHLAQ IKNKDIVPCAEVPDDVRDHIQTILNSPKKQKTPKKPKVDKAVANDQQNSSSASGGLHL NHGSSGQHGSTCPSLLFPRPSPSEQPAVDDGQKQKQEDADKKIAVFFFHNSIPFSAAK SMYYQEMVDAIAKCGVGYKAPSYENLRSTLLEKVKGDIHDCYKKYRDEWKETGCTILC DSWSDGRTKSFVIFSVTCPKGTLFLKSVDVSGHEDDASYLFELLESVVLEVGLENVIQ VITDTAASYVYAGRLLMAKYSSLFWSPCASYCINKMLEDISKQEWVGIVLEEAKSIVQ YIYSHAWIVNMMRKFTGGRELMRPRITRFVANYLTLRSIIIQEDNLKHMFSHSEWLSS IYSRRSDAQAIKSLLYLERFWKSAHEAVSVSEPLVKILRIVDGDMPAMGYIYEGIERA KVAIKAYYKGLEEKYMPIWDIIDRRWNMQLHSPLHAAAAFLNPSIFYNPNFKIDLRMR NGFQEAMLKLATTDKDKIEITKEHPMYINAQGALGTDFAIMGRTLNAPGDWWASYGYE IPTLQRVAIRILSQPCSSHWCRWNWSTFESIHTKKRNKVELEKFNDLVFVHCNLCLQA ICHSRDGKCKPVIFDEIDVSSVWSSELEPSAPLLDDSWLDTLPLECRGSP" mobile_element complement(31057770..31057837) /note="source:CACAO_M_E14113_F106_scaffold_3 14764 14825" /mobile_element_type="retrotransposon:LTR/Copia" gene 31061716..31065944 /locus_tag="TCM_046742" /note="dbxref CacaoGD:Thecc1EG046742" mRNA join(31061716..31062699,31065303..31065944) /locus_tag="TCM_046742" /product="Cytochrome P450, family 706, subfamily A, polypeptide 4, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07850.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046743t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07850.1" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01221t00001_G2" CDS join(31061716..31062699,31065303..31065923) /locus_tag="TCM_046742" /note="paralog of Thecc1EG046743t1" /codon_start=1 /product="Cytochrome P450, family 706, subfamily A, polypeptide 4, putative" /protein_id="EOY24463.1" /db_xref="Phytozome:POPTR_0001s07850.1" /db_xref="TAIR:AT4G12300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STI1" /translation="MTLISTSLRFDYSYSKIWSWLSKNTNGIDDFSRLFFTIVGIFAV FWYTWMYIRSKNKGKPPSPPGPRGLPLVGSLPFLQPDLHSYFAELARTYGPVVKLQLG SKLGILVTSPSAAREVLKDQDIVFANRDVPVAGMLLTGGRDIVWNPYGPEWRMLRKVC VLKMLSNATLDKVYSLRRREVRETVGYMHSTAGSPVNVGEQMFLTILNVVTSMLWGGT VEGDARASLGAEFRHVISEVTEILGLPNISDFFPVLAPLDLQGLIKRIGKPVERLNGI VDKIIDQRLKAEREIGSTAGNFKDFLQFLLQLKDEEDSKTPMTMNHIKALLLDMVVGG SETSSNSIEFTLAEVINKPEVMRKAQQELEEVVGKDKIVEETHIHKLPYLLAIMKESL RLHPALPLLVPHSPSEDCSVGGYCIPKGCRVFVNAWAIHRDPSVWENPLEFNPDRFLN SKWDFSGSDFNYFPFGSGRRICAGMAMAERMVLYSIATLLHSFDWKVPEGMKLDLTEK FGIVLKLKNPLVAVPTPRLSNTALYE" mobile_element complement(31062845..31064684) /note="source:CACAO_hAT_E410_scaffold_1 621 2494" /mobile_element_type="transposon:TIR/hAT" mobile_element 31066184..31066767 /note="source:scaffold_2_CACTA_0245 1039 1438" /mobile_element_type="transposon:TIR/CACTA" gene 31069864..31072499 /locus_tag="TCM_046743" /note="dbxref CacaoGD:Thecc1EG046743" mRNA join(31069864..31070863,31071731..31072499) /locus_tag="TCM_046743" /product="Cytochrome P450, family 706, subfamily A, polypeptide 6, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07850.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046742t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07850.1" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10029t4" CDS join(31069880..31070863,31071731..31072351) /locus_tag="TCM_046743" /note="paralog of Thecc1EG046742t1" /codon_start=1 /product="Cytochrome P450, family 706, subfamily A, polypeptide 6, putative" /protein_id="EOY24464.1" /db_xref="Phytozome:POPTR_0001s07850.1" /db_xref="TAIR:AT4G12320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STI1" /translation="MTLISSSLRFDYAYSKIWSWLSKNTDGIDDFSRLFFTLVGVFAI FSYTWMYIKSKNKGKPPSPPGPRGLPLVGNLPFLQPDLHFYFAELARTYGPVVKLQLG CKIGILVTSPSTAREVLRDQDIVFANRDVPAAALLVTGGRDIVWNPYGPEWRMLRKIC VLKMLSNATLDKVYSLRRREVRETVGYIHSKTGSPVNVGEQMFLTILNVVTSMLWGGT VGGDARASLGAEFRHIISEVTEILGLPNISDFFPVLAPLDLQRLIKRLGKSVEKLNGI VDKIIDQRLKVERESGSTTGEFKDFLQFLLQLKDEEDSKTPITMDHIKVLLLDMVVGG SDTSSNSIEFTLAEVVNKPEVMRKAQQELDEVVGKENIVEETHVHKLPYLLAIMKESL RLHPVLPLLVPHSPSEDCTVGGYAIPKGCRVFVNAWAIHRDPSVWENPLEFNPDRFLN SKWDFSGSDFNYFPFGSGRRICAGIAMAERMVLYSIATLLHSFDWKVPEGKKLDTIEK FGIVLKLKNPLVAIPTPRLSNPALYE" gene 31073102..31077631 /locus_tag="TCM_016059" /note="dbxref CacaoGD:Thecc1EG016059" mRNA join(31073102..31073306,31076004..31076189, 31076629..31077631) /locus_tag="TCM_016059" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" mobile_element 31073662..31073771 /note="source:scaffold_3_CACTA_0377 2466 2572" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31073985..31074156) /note="source:scaffold_1_CACTA_0005 273 429" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31074303..31074703) /note="source:scaffold_5_CACTA_0614 5 436" /mobile_element_type="transposon:TIR/CACTA" CDS join(31076039..31076189,31076629..31076957) /locus_tag="TCM_016059" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24465.1" /translation="MNLLTNDVVSDFLDENGRWKPDKLNDLPQGLRDQLSLVHLLSNK WSPSPNGYQWPFGANFTIIAIIRGFIKFEVGLYSALSRQLCFIAWQPPLESFVEMNVD AAVISNLRELSMGDLCQDNGGYWIFGFMGRLGMGTILKAELHVVYKGLTLVWDHGCQ" gene 31078139..31080437 /locus_tag="TCM_016061" /note="dbxref CacaoGD:Thecc1EG016061" mRNA join(31078139..31078644,31079072..31079188, 31079305..31080437) /locus_tag="TCM_016061" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010612001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016062t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07860.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17660t00001" CDS join(31078216..31078644,31079072..31079188, 31079305..31079934) /locus_tag="TCM_016061" /note="paralog of Thecc1EG016062t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY24466.1" /db_xref="Phytozome:POPTR_0001s07860.1" /translation="MSHTAYTLYSWLWDGSNQKVGLLGAVFSFFITTLVISLWQHWTL RKSRKPIPPLPPGPRGLPLVGYLLFLGTNLHMVFSELAGIYCPIFKLWLGNKLFVVIS SPLIAKKVVRVQDKTFSERDPPISAQIIACGCMILHLTLTAEKDDTTSEQKDFLQFLL ELKDNEGSASPITMNQLKGMLMDLLVGGTDTTSTMMEWTMAELIQHPEIMKKVKKELA DVVGLNSTVEEGHLPNLLYLHAVIKETFRLHPPLPLLVPRCPSVSSTVGGYTIPKGSR VFLNIWSFHRDPNIWDNPLEFQPERFLNDPNKFDYNGNEIRYMPFGSGRRRCLGLPLG EKMLYFMLASLLHSFEWKLPQGTEHDMSSKFGIVMKKKKPLLLIPTSSLPNLELYKK" gene 31080492..31094615 /locus_tag="TCM_016062" /note="dbxref CacaoGD:Thecc1EG016062" mRNA join(31080492..31080619,31084919..31085891, 31086008..31086633,31091694..31091792,31091904..31092879, 31092991..31094615) /locus_tag="TCM_016062" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010612001.2" /inference="similar to AA sequence:frave:gene32280" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10003t1" mobile_element 31081924..31081973 /note="source:CACAO_M_S_E100619_F266_scaffold_9 175 225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31083732..31084549) /note="source:scaffold_7_CACTA_0794 1 847" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31084402..31084578 /note="source:scaffold_5_CACTA_0596 1875 2030" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31084750..31084824 /note="source:CACAO_M_S_E4534_F4_scaffold_1 3469 3547" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(31084920..31085891,31086008..31086633, 31091694..31091792,31091904..31092879,31092991..31093620) /locus_tag="TCM_016062" /note="dbxref frave:gene32280" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY24467.1" /db_xref="TAIR:AT4G12320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NEX1" /translation="MSHATYTLYSWLWDGNNQKVGLLGAVFSFLIATLVISLWQLWTL RKSRKPIAPLPPGPRGLPLVGYLPFLGTDLHMVFTELAGIYGPIFKLWLGNKLFVVIS SPLLAKEVVRVQDKTFSERDPPIAAQVITYGCNDIAFDSYSSPSWKMKRRVLASEMLS NASLNACYDLRREQVMNTIGDVYKNVGKPIDIGELSFLTANNAVMGMLWGGKLRGEKR AIIEGRFKGISTELMVLMGKPNLSDFFPVLARFDIQGIERRMKKISHLLDQVLESVIE LRMNMATKKDKNDGNSEQKDFLQFLLELKENEDSASSITMNQLKGMLLNILGGGTDTT STMMEWTMAQLIQHPEVMAKVKKELADVVGLSSTVEEDHLPNLLYLHAVIKETFRLHP PLPLLVPRCPGVSSTVGGYSIPKGSRVFLNIWSIHRDPNIWDNPSEFQPERFLNDPNK FDYNGNDFRYMPFGSGRRRCPGLPLGEKMLYFMLASLLHSFEWKLPQGTEHDLSSIFG IVMKKKKPLLLIPTPSLPNLELYINLNLHRKLRCFALPFNLTFHFRYTLQTKCVVSLR MSHTTYTLYSWLWDGSNQKDRQLGAVFSFLIATLVISLWQLWTVRKSRKPLAPLPPGP RGLPLVGYLPFLGTDLHIVFTELAGIYGPIFKLWLGNKLCVVISSPLLAKEVVRVQDK TFSERDPPIAAQVITYGCNDIVFDSYSSPSWKRKRTVLASEMLTNASIKACYGLRREQ VMKTIGDVYKNVGKPIDIGELSFLTAINAIMGMLWGGKLRGEKTATIEGRFKEISTEL MVLLGKPNLSDFLPVLARFDIQGIERGMKKISHLFDQVLESVIELRMNYMATEKEKDD AKSEPKDFLQFLLELKDNEDRASSITMNQLKGMLMDIVVGGTDTTSTMTEWTMTELIQ HPEIMAKVKKELADAVGLNSTVEEDHLPNLGYLHAVIKETFRLHPPLPLLVARCPSVS SNVGGYTIPKGSTVFLNIWSIHRDPHIWDNPSEFQPERFLNNPDKFDYYGNDFRYMPF GSGRRRCPGLPLGEKMLYLMLASLLHSFEWKLPKGTEHDLSSKFGIVMKKKNPLLLIP TPSLPNLEPYIK" gene 31094191..31094665 /locus_tag="TCM_016063" /note="dbxref CacaoGD:Thecc1EG016063" mRNA 31094191..31094665 /locus_tag="TCM_016063" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS 31094202..31094600 /locus_tag="TCM_016063" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24468.1" /translation="MILLSFLLLLVCIQKRRHQGRLEYRTFIKFSISALQCTMPIKRV TISLNSSKCPVPMYEGKMIAKSCHIWMIPKLQNFQTLSDSLHAATIDPTSDICPVNCV VSFRAPLSTYCFHSVSFICSLMINQSNNSK" gene 31094662..31103147 /locus_tag="TCM_016064" /note="dbxref CacaoGD:Thecc1EG016064" mRNA join(31094662..31094854,31101072..31102155, 31102224..31103147) /locus_tag="TCM_016064" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07860.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016062t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07860.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc445t8" mobile_element complement(31096841..31097125) /note="source:CACAO_on_SS_E42_scaffold_2 24167 24457" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(31097392..31098113) /note="source:scaffold_5_CACTA_0607 5903 6670" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31097544..31098574 /note="source:scaffold_5_CACTA_0607 4866 5902" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31099133..31099936 /note="source:scaffold_5_CACTA_0607 5898 6664" /mobile_element_type="transposon:TIR/CACTA" CDS join(31101187..31102155,31102224..31102853) /locus_tag="TCM_016064" /note="paralog of Thecc1EG016062t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY24469.1" /db_xref="Phytozome:POPTR_0001s07860.1" /db_xref="TAIR:AT4G12320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NEX1" /translation="MLHTAYSSCSWLWNASNQKDGLFRAAFSFLIAILAISLWHLRKS RKSIAPLPPGPRGLPLVGYLPFLGTDNLHLVFTELAGVYGPIYRLWLGNKLCVVISSP SLAKEVVRDNDITFSERDPPIAAQICTFGCNDIVFDSYSTPDWRMKRKVLVREMLSNS SIKACHGLRREQVMKTITNVYKNAGKPIDFGELSFLTSINAVMSMLWGGKQGGDQKGN SIWTDFRELITQLMVILGKPNVSDIFPVLAWFDIQGIEREMKKISQSFDQLFDSMIEA RMSVATKMEKDDGKTEQKDFLQLLLELKEKDDGSSSITMNQLKALLMDVVVGGTDTTS TMMEWTMAELMQHPEIMEKVKKEIADVVGPNSTVEEVHMPNLRYLDAVVKETFRLHPP LPLLVPRCPGQSSTVGGYTIPKGTKVFLNIWSIHRDPHVWDNASEFQPERFLNDPDKF DYLGNDSRYMPFGSGRRMCAGVSLGEKMLYSTLASLLHAFEWKLPQGAEQDLSGRFGI IMKKMKPLVVIPTPRLSNLEHYLK" mobile_element complement(31103439..31103549) /note="source:CACAO_Mariner_E6_scaffold_1 4840 4930" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(31104419..31108117) /locus_tag="TCM_016065" /note="dbxref CacaoGD:Thecc1EG016065" mRNA complement(join(31104419..31105149,31105258..31105805, 31106039..31106152,31106414..31108117)) /locus_tag="TCM_016065" /product="Copper amine oxidase family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011011" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016066t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07870.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1433t3" CDS complement(join(31104939..31105149,31105258..31105805, 31106039..31106152,31106414..31107745)) /locus_tag="TCM_016065" /note="paralog of Thecc1EG016066t1" /codon_start=1 /product="Copper amine oxidase family protein" /protein_id="EOY24470.1" /db_xref="Phytozome:POPTR_0001s07870.1" /db_xref="TAIR:AT4G12290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7M0Z4" /translation="MESKPFFRFLFFFFAIAFLLLFTWTHLPYPPPPDVTTLLDCASN SPWCTSKNRFQSKQPSITKIPRATATTKRLHESAVPRHPLDPLTIQEFNKVRTILSSH PLFKSSKNYALHSVVLEEPDKDLVLRWTKGQPLFPRIASVIARANGESHVLTVNLETN EVNVLNTAPPTGYPMMTMEDMTSATWAPLSNPKFNRTIIEQGVNLDDVACLPISLGWF GENEENRRLIKVQCYSMKDTANFYMRPIEGLTVLLDLDTKEVVEISDTGRAIPVPKAT NTDYRYSEQKMQQELNLINPISIEQPKGPSFVIEDEHLVKWANWEFHLKADPRAGVVV SGAKVWDPDSGVMRDVMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDP LNDCPRNAYYMDGVFAAGDGVPYVRSNMICVFESYTGDIGWRHSESPITGMEIKEVRP KVTLVVRMAASVANYDYILDWEFQTDGLIRIKVGLSGILMVKGTTYENMKQVEGQEHL FGTLLSENVIGVIHDHYITFYLDMDIDGSDNSFVKVNIKKQDTSPGESPRKSYLKAVR NVAKTEKDAQVQLKLYDPSEFHVINPTKKTRVGNPVGYKVVPGGTAASLLDHEDPPQR RGAFTNNQIWVTPYNKSEQWAGGLFVYQSQGEDTLAVWSDRDRSIENKDIVLWYTLGF HHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILRIPPNVEKDLPVCKPAGSA" gene complement(31108983..31112357) /locus_tag="TCM_016066" /note="dbxref CacaoGD:Thecc1EG016066" mRNA complement(join(31108983..31109454,31109537..31109634, 31109768..31110019,31110148..31110216,31110332..31110445, 31110905..31111262,31111396..31112357)) /locus_tag="TCM_016066" /product="Copper amine oxidase family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G62810.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016065t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07880.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2962t3_C1" CDS complement(join(31109244..31109454,31109537..31109634, 31109768..31110019,31110148..31110216,31110332..31110445, 31110905..31111262,31111396..31112306)) /locus_tag="TCM_016066" /note="paralog of Thecc1EG016065t1" /codon_start=1 /product="Copper amine oxidase family protein, putative" /protein_id="EOY24471.1" /db_xref="Phytozome:POPTR_0001s07880.1" /db_xref="TAIR:AT1G62810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1H9" /translation="MDINIYALGKLNCQYSKPISSLSSSLLGREIMEKTPWLHLCLIS CLILFFLVRSWYPPRKPELPDCSLHAPWCTSKNRIFSNSKAGSALHTQVQESTDHSAE SPRHPLDPLTIQEINRVRTILSSYEPFSSTFPTINTLLLDEPDKLQVIGWRKGDPLPP RKAAVLALLNGQSHVLSVDLDSSRVTSHAINPTSGYPMLSMNDILGASKVPFSSAEFN KSMTARAISLSNLVCLTPSAGWFGPKEDGKRVIRVQCYSGEGTSNFYMRPIEGLTVTV DLDKMEVVKIYDAGRRIPVPKSTDTDYRSDQRAGLVISRAMVRDSETGELRNVMYKGF SSELFVPYMDLDESWYFKSYMDAGEFGLGTTALSLVPLNDCPRYSYYMDGVFAASDGM QFVQPSMICLFESYAGDISWRHSETQVFGFQIREARPKVTLVARMAASVGNYDYIFDW EFQTDGLIRIKVGLSGMLMVKEVLIRMYIRCLIKEESLPGESPRKSYLKVERKTAKTE KDAQIKLKLYDPSEFHMINPSRRSRLGNPTGYKLVPGGTAASLLDGDDPPQLRSAFTN NQIWVTPFNKSEQWAGGLLVYQSRGEDTLAVWSERNRPIESKDIVLWYTMGFHHIPCQ EDFPVMPTVTSGFELKPVNFFESNPILRAAPAFEKDLIVCRPGAFS" gene 31115365..31117163 /locus_tag="TCM_016067" /note="dbxref CacaoGD:Thecc1EG016067" mRNA 31115365..31117163 /locus_tag="TCM_016067" /product="UDP-D-glucuronate 4-epimerase 3" /inference="alignment:exonerate- protein:2:TAIR:AT4G12250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005530t1" /inference="similar to AA sequence:TAIR:AT4G00110.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01515t00001_C2" CDS 31115525..31116820 /locus_tag="TCM_016067" /note="paralog of Thecc1EG005530t1" /codon_start=1 /product="UDP-D-glucuronate 4-epimerase 3" /protein_id="EOY24472.1" /db_xref="TAIR:AT4G00110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIS3" /translation="MSHLDNIPSTPGKYKPDKSFRFHSSTASSLSKLTLYSTLFLSLL LILLLLLSTPSSTTSPRRHLSTGTHHSPVSLPHKLIHKSARPRSTAGHTVLVTGASGF VGTHVSLALKRRGDGVLGLDNFNQYYDPALKRARQKFLEKAGIFIVEGDINDKDLLQQ LFDAVLFTHVMHLAAQAGVRYAMQNPGSYIHSNIAGFVNLLEVSKSASPQPAIIWASS SSVYGLNSKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGP WGRPDMAYFFFTRDIMKGKTITLYESPDKGSVARDFTYIDDVVKGCLGALDTAKKSTG SGGKKRGPAQFRIFNLGNTSPVPVSRLVSILEKILKVKAKKKVVPLPRNGDVEFTHAN ISLAVRELGYKPTTDLEAGLKKFVRWYLGFYLGSKKSSW" gene complement(31118417..31120717) /locus_tag="TCM_016068" /note="dbxref CacaoGD:Thecc1EG016068" mRNA complement(31118417..31120717) /locus_tag="TCM_016068" /product="Zinc finger family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011015" /inference="similar to AA sequence:Phytozome:POPTR_0003s11420.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14189t00001; inference alignment:Newbler:10:TSA:cgbaL_g14698t00001" CDS complement(31119089..31120237) /locus_tag="TCM_016068" /codon_start=1 /product="Zinc finger family protein" /protein_id="EOY24473.1" /db_xref="Phytozome:POPTR_0003s11420.1" /db_xref="TAIR:AT4G12240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STI7" /translation="MLHKFPNIFNSIQSTRTKALNPWNSLYKYCHFKKKVGFDSLNST STSTSTLASKTAQNRVAIFWDLDNKPPNSFPPFEAAVKLKTAASSFGVVRSMVAYANH HAFSYVPKVVREQRKERKLLNQLENKGVIKSVEPYFCRVCGRRFYTNEKLINHFKQIH EREHQKRLNQIEYARGSRRVKLVAKYSMKMEKYRNAARDVLTPKVGYGLADELKRAGF WIGTVSNKPQAADVALRDHIVDVMDKRKAECLVLVSDDSDFVGVLKEAKLRCLKTVVV GDISDGALKRLADAGFSWTEILMGKAKKEAVSVVGKWKDRDILKRLEWKYNPEVERKL YSYGDESEDQDFDSTDDGNDADCMHKEDAGAWWDLDSDSDITSSQRRH" mobile_element 31120777..31120914 /note="source:scaffold_5_CACTA_0610 5182 5331" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31120780..31120956) /note="source:scaffold_1_CACTA_0008 14183 14367" /mobile_element_type="transposon:TIR/CACTA" gene complement(31121084..31122677) /locus_tag="TCM_016069" /note="dbxref CacaoGD:Thecc1EG016069" mRNA complement(join(31121084..31121542,31121663..31122033, 31122623..31122677)) /locus_tag="TCM_016069" /product="Ribonuclease H-like protein" /inference="alignment:exonerate- protein:2:ricco:29736.m002093" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002053t1" /inference="similar to AA sequence:TAIR:AT5G42905.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(31121293..31121542,31121663..31121937)) /locus_tag="TCM_016069" /note="paralog of Thecc1EG002053t1" /codon_start=1 /product="Ribonuclease H-like protein" /protein_id="EOY24474.1" /db_xref="TAIR:AT5G42905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P0C2F6" /translation="MQKCLLTNKECVMRHLSSNSCNMQCRQEDETIPHTLRDYPLASA LSLRLVPQKYQALFFSASLTDWLSHNLSHCKLTVREIQWVTIFGTSCWNGIEALKSRK EEILVDWTASPHGWFTLNSDGAFRRSLGKAVTSGVLRDSCGNWFGGFSATFGTCTAYR AELWGTYKGLNLAW" mobile_element complement(31122759..31122911) /note="source:scaffold_7_CACTA_0795 2856 3011" /mobile_element_type="transposon:TIR/CACTA" gene 31123212..31128469 /locus_tag="TCM_016070" /note="dbxref CacaoGD:Thecc1EG016070" mRNA join(31123212..31123458,31124277..31124402, 31124923..31125021,31125330..31125472,31125966..31126074, 31126688..31126795,31127236..31127376,31127479..31128469) /locus_tag="TCM_016070" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011020" /inference="similar to AA sequence:Phytozome:POPTR_0001s07900.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03054t00001" CDS join(31123387..31123458,31124277..31124402, 31124923..31125021,31125330..31125472,31125966..31126074, 31126688..31126795,31127236..31127376,31127479..31127904) /locus_tag="TCM_016070" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY24475.1" /db_xref="Phytozome:POPTR_0001s07900.1" /db_xref="TAIR:AT4G12230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3M7" /translation="MKGVFSAPGDYIHFKSQVPLHKIPIGTKQWRYYDFGPKVVPPII CLPGTTGTADVYYKQIMSLSMKGYRVISVDIPRVWNHQEWIQSFEKFLDAIDVHHIHL YGTSLGGFLAQLFAQHRPRRVKSLILSNAFLETRSFAAAMPWAPIVGWTPSFLLKRYI LTGIRDGPHEPFIADSVDFVVSQVETLSREDLASRLTLTVDSASVGPLLLSDSFITIM DTNDFSAIPQQLKDQLSERYPGARRAYLKTGGDFPFLSRPDEVNLHLQLHLRRVGVEA QPDLVRSIPKDGTGGSPSKENDEKKDSDDPPKDNGGNPESTSEERQLPPAPESSESHG LDDQLLSNAKICSLGHEGAISLSHSALLKNQHTVASKILLQSTWEFFIFSLLPFYVES LYITSSYGWKFRQLV" mRNA join(31124126..31124402,31124923..31125021, 31125330..31125472,31125966..31126074,31126688..31126795, 31127236..31127376,31127479..31128231) /locus_tag="TCM_016070" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011020" /inference="similar to AA sequence:Phytozome:POPTR_0001s07900.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc454t68; inference alignment:Newbler:10:TSA:cgbaB_g03054t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc913t10" CDS join(31124193..31124402,31124923..31125021, 31125330..31125472,31125966..31126074,31126688..31126795, 31127236..31127376,31127479..31127904) /locus_tag="TCM_016070" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY24476.1" /db_xref="Phytozome:POPTR_0001s07900.1" /db_xref="TAIR:AT4G12230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3M7" /translation="METQRGTLLLLFINCYGSHFRSCLFLPQIGTKQWRYYDFGPKVV PPIICLPGTTGTADVYYKQIMSLSMKGYRVISVDIPRVWNHQEWIQSFEKFLDAIDVH HIHLYGTSLGGFLAQLFAQHRPRRVKSLILSNAFLETRSFAAAMPWAPIVGWTPSFLL KRYILTGIRDGPHEPFIADSVDFVVSQVETLSREDLASRLTLTVDSASVGPLLLSDSF ITIMDTNDFSAIPQQLKDQLSERYPGARRAYLKTGGDFPFLSRPDEVNLHLQLHLRRV GVEAQPDLVRSIPKDGTGGSPSKENDEKKDSDDPPKDNGGNPESTSEERQLPPAPESS ESHGLDDQLLSNAKICSLGHEGAISLSHSALLKNQHTVASKILLQSTWEFFIFSLLPF YVESLYITSSYGWKFRQLV" mobile_element 31128334..31128742 /note="source:CACAO_MITE_S202_scaffold_8 1 415" /mobile_element_type="transposon:TIR/MITE" gene 31128714..31130661 /locus_tag="TCM_016071" /note="dbxref CacaoGD:Thecc1EG016071" mRNA join(31128714..31128842,31128928..31129103, 31129206..31129290,31130254..31130661) /locus_tag="TCM_016071" /product="Ribosomal protein S13A, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g26630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014977t1" /inference="similar to AA sequence:frave:gene13430" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g16350t00001" CDS join(31128740..31128842,31128928..31129103, 31129206..31129290,31130254..31130465) /locus_tag="TCM_016071" /note="dbxref frave:gene13430; paralog of Thecc1EG014977t1" /codon_start=1 /product="Ribosomal protein S13A, putative" /protein_id="EOY24477.1" /db_xref="TAIR:AT4G00100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q69UI1" /translation="MTPSQIGVTLRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDL YHLIKKAVAIRKHLESNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPRVNHGKHSG CLEKVLELWTGGLSCPDFTKKGGLRILFAVTYTKQLATTECYHHWTKLNIKSNGGPVR LQLESKGADFIYFCTSKEPKTRSAGQDNSSK" gene complement(31131711..31132224) /locus_tag="TCM_016073" /note="dbxref CacaoGD:Thecc1EG016073" mRNA complement(31131711..31132224) /locus_tag="TCM_016073" /product="Calcium-binding EF-hand family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g03280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041153t1" /inference="similar to AA sequence:Phytozome:Glyma11g03280.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06634t00001" CDS complement(31131772..31132215) /locus_tag="TCM_016073" /note="paralog of Thecc1EG041153t1" /codon_start=1 /product="Calcium-binding EF-hand family protein" /protein_id="EOY24478.1" /db_xref="Phytozome:Glyma11g03280.1" /db_xref="TAIR:AT1G12310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZ50" /translation="MGKDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNP TQAQLKAIVAEEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKESTGFVSVA DLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIRYEEFIARMVAK" mobile_element 31133535..31133628 /note="source:scaffold_9_CACTA_0946 17758 17841" /mobile_element_type="transposon:TIR/CACTA" gene 31136359..31140373 /locus_tag="TCM_016074" /note="dbxref CacaoGD:Thecc1EG016074" mRNA join(31136359..31137061,31137945..31138205, 31138320..31139195,31139285..31140373) /locus_tag="TCM_016074" /product="Leucine-rich repeat protein kinase family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011021" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005524t1" /inference="similar to AA sequence:ricco:30190.m011021" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10075t2" CDS join(31136629..31137061,31137945..31138205, 31138320..31139195,31139285..31139766) /locus_tag="TCM_016074" /note="dbxref ricco:30190.m011021; paralog of Thecc1EG005524t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY24479.1" /db_xref="TAIR:AT4G22730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49654" /translation="MGISQFLFFLILLLFTFYLPLSVHGNTEVRALMELKASLDPTNM VLESWKSDGDPCGGSFVGVACNEHRKVANISLQGKGLSGKVSPAVAGLKCLSGLYLHY NSLSGEIPKELSNLRELTDLYLNVNNLSGSIPPEIGNMADLQVLQLCCNQLTGNIPTE IGSLKKLSVLALQYNRLDGKIPASIGNLGMLRRLDLSYNRLSGAIPTTLADIPQLEIL EIRNNTLYGSVPSGLKRLNGGFQGENNPGLCGTGFSTLRDCTPFDGLNINQLEPFRSH LNGTATGVTSQTSNIQGDCNHTDCSNPSRFPKIPVIAGIITVSFVFVVGGFLAFVHYR RQKQKIGNTSDPSDGRLSTDQAKEFHRNGSVSPLVTLEYSYGWDPLGDGWKGIGFSEE HLNKFRFNLEEVESATQCFSEMNLLGRSNFSSVYKGILRDGSLVAIRSINVTSCKSEE AEFVKGLYLLTSLRHENIVRLRGFCCSRGRGECFLMYDFASKGNLSKYLDIEGGGEQI LDWSTRISIINGIAKGMEYLHRSEANKQPIVHRNISVEKVFIDQQFNPLIADSGLHKI LADDVVYSTLKVSAAMGYLAPEYITTGRFTEKTDIFAFGVIILQILSGKLQLTSSMRL GAESSKFEDFIDTNLRGEFSESMAAKLGKIALSCTHEHPDDRPSMETIIKELNDCNVS S" gene complement(31140581..31143378) /locus_tag="TCM_016075" /note="dbxref CacaoGD:Thecc1EG016075" mRNA complement(join(31140581..31141250,31141327..31141485, 31141681..31141779,31141951..31142204,31142855..31143378)) /locus_tag="TCM_016075" /product="Glycine cleavage T-protein family" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07940.1" /inference="similar to AA sequence:ricco:30190.m011026" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00982t00002" CDS complement(join(31141006..31141250,31141327..31141485, 31141681..31141779,31141951..31142204,31142855..31143279)) /locus_tag="TCM_016075" /note="dbxref ricco:30190.m011026" /codon_start=1 /product="Glycine cleavage T-protein family" /protein_id="EOY24480.1" /db_xref="TAIR:AT4G12130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L733" /translation="MRRFVPSLLIRHRSLHHLQNAGPLCSHLKSRSVIRFSGPETIKF LQGLLTNDVRRFGEPPREDNSPVPTTNVASVVVPPMYAALLTPQGRFLYDLFLYRPPR AEEKLDRTGSGPGRASGGSVEILADVDGSILDELLATFKKYRLRSKVEIENVAEDFSC WQRYGQNLFGKTPTVEEPEAASVGWGIGVDGSGTTASHGNDVGWQWFKDPRLGCLGFR GIFPSGTTPPLVESDKETDEENYLLWRLEKGVAEGSTEIPKGEAIPLEYNFTGLNAIS FDKGCYVGQELIARTHHRGVIRKRLLPLKFLDENGKEVEGKVAPGSEMINTASGKKAG TVITALGFCGMGVLRLDEAFKGFGSLTLQGQEDVKVEAIRPDWWPTEWFQEHQQHSAV A" mobile_element 31145369..31146051 /note="source:CACAO_MITE57_scaffold_3 1 683" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(31147538..31147645) /note="source:scaffold_3_CACTA_0396 881 987" /mobile_element_type="transposon:TIR/CACTA" gene 31151353..31152466 /locus_tag="TCM_016076" /note="dbxref CacaoGD:Thecc1EG016076" mRNA join(31151353..31151605,31151707..31152466) /locus_tag="TCM_016076" /product="Ankyrin repeat and KH domain-containing protein 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005522t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11470.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14194t00001" CDS join(31151546..31151605,31151707..31152297) /locus_tag="TCM_016076" /note="paralog of Thecc1EG005522t1" /codon_start=1 /product="Ankyrin repeat and KH domain-containing protein 1" /protein_id="EOY24481.1" /db_xref="Phytozome:POPTR_0003s11470.1" /db_xref="TAIR:AT2G45360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RDC1" /translation="MKLVWSPETASKAYIDTVKSCELYHESGVAELVSAMAAGWNARF IVETWSQGGATITSIGLAVASSHTNGRHVCIVPDERSRLEYVQALEEAGMSPEVIVGE PEEVMNGLNGIDFMVVDSQRKDFSRVLRLAKLSNRGAVLVCKNANSRSASSFRWRSVI DDGSRRLVRSVFLPVGKGLDIAHVATSGGNSGSGKGESRWIKHVDRQSGEVHVIRK" gene complement(31152795..31155803) /locus_tag="TCM_016077" /note="dbxref CacaoGD:Thecc1EG016077" mRNA complement(join(31152795..31153171,31153328..31153398, 31153620..31153653,31153741..31153805,31154755..31154837, 31154936..31154995,31155318..31155803)) /locus_tag="TCM_016077" /product="Class I peptide chain release factor" /inference="alignment:exonerate- protein:2:ricco:30190.m011028" /inference="similar to AA sequence:Phytozome:POPTR_0003s11480.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09932t00001" CDS complement(join(31153081..31153171,31153328..31153398, 31153620..31153653,31153741..31153805,31154755..31154837, 31154936..31154995,31155318..31155612)) /locus_tag="TCM_016077" /codon_start=1 /product="Class I peptide chain release factor" /protein_id="EOY24482.1" /db_xref="Phytozome:POPTR_0003s11480.1" /db_xref="TAIR:AT1G62850.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVS7" /translation="MAVIRTSANMILKEILYHSPLSSISLSSSARAVLPGFCGTIRVT PSRGISFSRIRCAASDASAERKVSARLSQVQQLLQEAEERASSAGNEPTPQITLDHVT VSFARSGGPGGQNVNKVNTKVDMRFNVKNAYWLSDRIRERIMQLEKNRINKDGEIVIS STKTRTQKGNIDDALAKLQTIIDAAAYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKAL SDKKAFRRSRDSWD" gene complement(31156201..31158723) /locus_tag="TCM_016078" /note="dbxref CacaoGD:Thecc1EG016078" mRNA complement(join(31156201..31156696,31157009..31157101, 31157218..31157293,31157392..31157472,31157555..31158153, 31158627..31158723)) /locus_tag="TCM_016078" /product="Glycine-rich protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011030" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046703t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07980.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10502t00001; inference alignment:Newbler:10:TSA:cgbaL_g10502t00001" mRNA complement(join(31156485..31156696,31157009..31157101, 31157218..31157293,31157392..31157472,31157555..31158153, 31158524..31158607)) /locus_tag="TCM_016078" /product="Glycine-rich protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011030" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046703t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07980.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc734t13; alternateUTRof:Thecc1EG016078t1; inference alignment:Newbler:10:TSA:cgbaL_g10502t00001" CDS complement(join(31156491..31156696,31157009..31157101, 31157218..31157293,31157392..31157472,31157555..31158133)) /locus_tag="TCM_016078" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046703t1" /codon_start=1 /product="Glycine-rich protein, putative isoform 1" /protein_id="EOY24483.1" /db_xref="Phytozome:POPTR_0001s07980.2" /db_xref="TAIR:AT4G22740.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3M1" /translation="MQGGRGGRDPFFDFGDPFGGFGGFGGFGGPRSLLSNFFGGRDPF DDPFFARPFGGMFESSFFGPGQSPFPDMHPNGFIEHQPPEPKRSRGPIIQELNSDDEK EEADKEKKENPRKHGRSNDEPYVEVPDDEAGQSERRNRHLQYMNGYNSLYDRQQQQPQ TRSFAFQSSTVTYGGANGAYHTSSKTRRTGSDGVTFEESKEADTTTGQATHRVSRGLH NKGHSVTRKLKSDGRVDTMQTLHNLNEDELSGFEEAWNGNARKHLPGLSGNFIGHDSI GAGRGGQNGQAGRGGWALPSNECSQQSGRVMLGARDGAGPSSSQQSMRMRGSTVLKDK SSYSQGKRRG" CDS complement(join(31156491..31156696,31157009..31157101, 31157218..31157293,31157392..31157472,31157555..31158133)) /locus_tag="TCM_016078" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046703t1" /codon_start=1 /product="Glycine-rich protein, putative isoform 1" /protein_id="EOY24484.1" /db_xref="Phytozome:POPTR_0001s07980.2" /db_xref="TAIR:AT4G22740.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3M1" /translation="MQGGRGGRDPFFDFGDPFGGFGGFGGFGGPRSLLSNFFGGRDPF DDPFFARPFGGMFESSFFGPGQSPFPDMHPNGFIEHQPPEPKRSRGPIIQELNSDDEK EEADKEKKENPRKHGRSNDEPYVEVPDDEAGQSERRNRHLQYMNGYNSLYDRQQQQPQ TRSFAFQSSTVTYGGANGAYHTSSKTRRTGSDGVTFEESKEADTTTGQATHRVSRGLH NKGHSVTRKLKSDGRVDTMQTLHNLNEDELSGFEEAWNGNARKHLPGLSGNFIGHDSI GAGRGGQNGQAGRGGWALPSNECSQQSGRVMLGARDGAGPSSSQQSMRMRGSTVLKDK SSYSQGKRRG" gene complement(31159122..31162897) /locus_tag="TCM_016079" /note="dbxref CacaoGD:Thecc1EG016079" mRNA complement(join(31159122..31159663,31160057..31160122, 31160209..31160294,31160373..31160496,31161658..31161749, 31161837..31162083,31162635..31162897)) /locus_tag="TCM_016079" /product="DHHC-type zinc finger family protein" /inference="alignment:exonerate- protein:2:TAIR:AT3G60800.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005520t1" /inference="similar to AA sequence:ricco:30174.m008881" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09200t00001" CDS complement(join(31159535..31159663,31160057..31160122, 31160209..31160294,31160373..31160496,31161658..31161749, 31161837..31162083,31162635..31162829)) /locus_tag="TCM_016079" /note="dbxref ricco:30174.m008881; paralog of Thecc1EG005520t1" /codon_start=1 /product="DHHC-type zinc finger family protein" /protein_id="EOY24485.1" /db_xref="TAIR:AT3G60800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYP5" /translation="MNMAWNVFKFCTALRALGSIMIVFVLGIVGVTYYAVVVAHYGPS LFLGGFDALSAVAVIFLFHFLLVMVIWSYFAVVLTDPGGVPPNWKPPRDEEKGEVDPL VSFSYGSPELGSNQSAVPGDSPNQDIRFCRKCNQFKPPRTHHCSVCKRCILKMDHHCV WVVNCVGALNYKYFLLFLFYTFLGATLSSLSLLRVFIEFFNDGEIAETPGTLAATFIT FVLNIAFALSILGFLIMHITLVGANTTTIEAYEKKTTPKWRYDLGWKKNFEQVFGTEK KFWFIPAYSEEDLRCMPSLQGLEYPTRPDWEPPQQH" mobile_element 31163743..31164832 /note="source:MITE_hAT_12 2 1084" /mobile_element_type="transposon:TIR/MITE" mobile_element 31166210..31166356 /note="source:scaffold_1_CACTA_0016 1384 1538" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31166239..31166385 /note="source:CACAO_on_S_E390_scaffold_9 2172 2354" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(31168154..31168197) /note="source:scaffold_2_CACTA_0252 4724 4768" /mobile_element_type="transposon:TIR/CACTA" gene 31168807..31171729 /locus_tag="TCM_016081" /note="dbxref CacaoGD:Thecc1EG016081" mRNA join(31168807..31169292,31169467..31171729) /locus_tag="TCM_016081" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene32297" /inference="similar to AA sequence:Phytozome:POPTR_0003s11530.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06046t00001" CDS join(31169203..31169292,31169467..31170819) /locus_tag="TCM_016081" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24486.1" /db_xref="Phytozome:POPTR_0003s11530.1" /db_xref="TAIR:AT1G12330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVT1" /translation="MAPSSSSSCSPSSSKSPPPPLPHQSPFFTPIQECEREEQEDATP CVSTDKGMTPKHLATPLHNKNIGKANARKRQESGGNGGEDGSVSCNKCRPHSREKISV VPLDNNGVNKHSFSMASPNGIFKSIFHSLTRKSPKSTDMSTAREEQWKIAVAELSNKL IQSTRKRDEALLEASRLKYSMAELEKKLNKLEVYCHNLKSGLDECNSNSPYRIGKGHN IHQVKDRDGVIGANEQVIQQFLVSVSEARSSIRLLSRSLTMQLRHMGSKVCERISVLL QPYDMKISYSKNPKTLLLYLEALLNKAFFEDFESIGFHKNAVNQILNPIDRCEANYGS FNDLQGLTWEEVLNKGTRHFSEEFSKFCDRKMSEIVAMLGWNRAWPEPLLQAFFSASK SVWLLHLLANSVHPGLPIFRVDKGVRFDSVYMEDMGGERARKLIPSVARLMITPGFYV YGNVVKCKVICRYYNNTDNSLIDKGLTPSP" mobile_element 31172192..31172228 /note="source:CACAO_M_E70304_F52_scaffold_10 8170 8206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31173993..31174037) /note="source:CACAO_Mariner_E25_scaffold_1 3191 3235" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 31174408..31187298 /locus_tag="TCM_016082" /note="dbxref CacaoGD:Thecc1EG016082" mRNA join(31174408..31174613,31175591..31175649, 31175775..31175856,31176035..31176113,31176614..31176664, 31176768..31176864,31177070..31177102,31177323..31177448, 31177521..31177709,31177802..31177885,31177973..31178071, 31178332..31178408,31178784..31178880,31179484..31179609, 31179689..31179784,31179949..31180068,31180185..31180262, 31181329..31181519,31181705..31181795,31181892..31181981, 31182068..31182126,31185349..31186212) /locus_tag="TCM_016082" /product="Sec1/munc18-like (SM) proteins superfamily isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G12360.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036410t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11540.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10233t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10233t5" CDS join(31174541..31174613,31175591..31175649, 31175775..31175856,31176035..31176113,31176614..31176664, 31176768..31176864,31177070..31177102,31177323..31177448, 31177521..31177709,31177802..31177885,31177973..31178071, 31178332..31178408,31178784..31178880,31179484..31179609, 31179689..31179784,31179949..31180068,31180185..31180262, 31181329..31181519,31181705..31181795,31181892..31181981, 31182068..31182121) /locus_tag="TCM_016082" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG036410t1" /codon_start=1 /product="Sec1/munc18-like (SM) proteins superfamily isoform 1" /protein_id="EOY24487.1" /db_xref="Phytozome:POPTR_0003s11540.1" /db_xref="TAIR:AT1G12360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C5P7" /translation="MSYSDSDSSSGAGDYKNFRQISRERLLYEMLRSAKTRDSKSTWK VLIMDKVTVKIMSYSCKMADITSEGVSLVEDIYRRRQPLPSMDAIYFIQPTKENVVMF LSDMSGRTPLYKKAFVYFSSPISRELVAYVKKDSSVLPRIGALSEMNLEYFAIDGQGF ITDNGKALEDLFGDEENTRKGDACLNVMATRVATVFASLREFPLVRYRAAKSLDPMTM TTFRDLIPTKLAAGIWNCLMKYKSIPNFPQKETCELLILDRSIDQIAPVIHEWTYDAM CHDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPIWVELRHAHIADASERLHDKMT NFVSKNKAAQLQHGSRDGGELSTRELQKMVQALPQYSEQIDKLSLHVEIAGKINRMIR DQGLRELGQLQQDLVFGDAGMKDVIKFLTTNEEASRENKLRLLMILAAIYPEKFEGEK GLNLMKLAKLPPDDMNAVNNMRLLAPSSDAKKSSAGAFSLKFDIHKKKRAARKDRSGE QETWQLSRFYPIIEELVEKLSKGELSKDDYPCMNDPSPTFHGTSQAASIHEAPVAHSM RSRRTPTWARPRGSDDGYSSDSVLKHASSDFKKMGKRIFVFIVGGATRSELRVCHKLT GKLNREVVLGSTSLDDPPQFITKLKLLTAHELSLDDLQI" mRNA join(31176835..31176864,31177070..31177102, 31177323..31177448,31177521..31177709,31177802..31177885, 31177973..31178071,31178332..31178408,31178784..31178880, 31179484..31179609,31179689..31179784,31179949..31180068, 31180185..31180262,31181329..31181519,31181705..31181795, 31181892..31181981,31182068..31182125,31185348..31186107, 31186372..31186439,31186528..31186608,31187015..31187072, 31187263..31187298) /locus_tag="TCM_016082" /product="Sec1/munc18-like (SM) proteins superfamily isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G12360.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036410t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11540.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc491t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10233t5" CDS join(31177070..31177102,31177323..31177448, 31177521..31177709,31177802..31177885,31177973..31178071, 31178332..31178408,31178784..31178880,31179484..31179609, 31179689..31179784,31179949..31180068,31180185..31180262, 31181329..31181519,31181705..31181795,31181892..31181981, 31182068..31182121) /locus_tag="TCM_016082" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG036410t1" /codon_start=1 /product="Sec1/munc18-like (SM) proteins superfamily isoform 2" /protein_id="EOY24488.1" /db_xref="Phytozome:POPTR_0003s11540.1" /db_xref="TAIR:AT1G12360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C5P7" /translation="MNLEYFAIDGQGFITDNGKALEDLFGDEENTRKGDACLNVMATR VATVFASLREFPLVRYRAAKSLDPMTMTTFRDLIPTKLAAGIWNCLMKYKSIPNFPQK ETCELLILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHEVPSKTGGPPEKKEVLL EEHDPIWVELRHAHIADASERLHDKMTNFVSKNKAAQLQHGSRDGGELSTRELQKMVQ ALPQYSEQIDKLSLHVEIAGKINRMIRDQGLRELGQLQQDLVFGDAGMKDVIKFLTTN EEASRENKLRLLMILAAIYPEKFEGEKGLNLMKLAKLPPDDMNAVNNMRLLAPSSDAK KSSAGAFSLKFDIHKKKRAARKDRSGEQETWQLSRFYPIIEELVEKLSKGELSKDDYP CMNDPSPTFHGTSQAASIHEAPVAHSMRSRRTPTWARPRGSDDGYSSDSVLKHASSDF KKMGKRIFVFIVGGATRSELRVCHKLTGKLNREVVLGSTSLDDPPQFITKLKLLTAHE LSLDDLQI" gene complement(31185351..31189567) /locus_tag="TCM_016083" /note="dbxref CacaoGD:Thecc1EG016083" mRNA complement(join(31185351..31186102,31186366..31186437, 31186526..31186607,31187014..31187072,31187263..31187299, 31187375..31187532,31187636..31187876,31187957..31188297, 31188683..31189133)) /locus_tag="TCM_016083" /product="Photolyase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011036" /inference="similar to AA sequence:Phytozome:POPTR_0001s08030.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10235t4; alternateUTRof:Thecc1EG016083t1; inference alignment:Newbler:10:TSA:cgbaL_g02321t00002" mRNA complement(join(31185809..31186102,31186366..31186437, 31186526..31186607,31187014..31187072,31187263..31187299, 31187375..31187532,31187636..31187876,31187957..31188297, 31188683..31189567)) /locus_tag="TCM_016083" /product="Photolyase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011036" /inference="similar to AA sequence:Phytozome:POPTR_0001s08030.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02321t00002" CDS complement(join(31185929..31186102,31186366..31186437, 31186526..31186607,31187014..31187072,31187263..31187299, 31187375..31187532,31187636..31187876,31187957..31188297, 31188683..31189006)) /locus_tag="TCM_016083" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Photolyase 1 isoform 1" /protein_id="EOY24489.1" /db_xref="Phytozome:POPTR_0001s08030.2" /db_xref="TAIR:AT1G12370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SB00" /translation="MASLSSPSTEPKSLPPGRIRVLKEGSQPLKKGPVVYWMFRDQRL KDNWALIHAVDQANKANVPVSVAFNLFDQFLGAKARHLGFMLKGLSQLQRSIQDILQI PFFFFQGEAEETIPKFLEECGASLLVTDFSPLRQIRKCKDEICEKVSDSVTIHEVDAH NIVPVWVASHKLEYSAKTIRGKINKLLPEYLTDFPILQPPNKKWDAMNQLIDWDSVIA DVLRKGAEVPEIEWCEPGEIAAMEVLMGTKDGFLTKRLKNYSTDRNIPLKPRALSCLS PYLHFGQISAQRCALEAHRFRKLHAQAVDTFLEELIIRRELADNFCYYQPHYDSLEGA WEWARKTLMDHASDKREHVYTMEQLEKAQTADPLWNASQLEMVHFGKMHGFMRMYWAK KILEWTKGPKEAIEICIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWRERPVFGKIR YMNYAGCKRKFDVDGYIAYIKRLVGETNKRKAQSQLSQTTKQLRC" CDS complement(join(31185929..31186102,31186366..31186437, 31186526..31186607,31187014..31187072,31187263..31187299, 31187375..31187532,31187636..31187876,31187957..31188297, 31188683..31189006)) /locus_tag="TCM_016083" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Photolyase 1 isoform 1" /protein_id="EOY24490.1" /db_xref="Phytozome:POPTR_0001s08030.2" /db_xref="TAIR:AT1G12370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SB00" /translation="MASLSSPSTEPKSLPPGRIRVLKEGSQPLKKGPVVYWMFRDQRL KDNWALIHAVDQANKANVPVSVAFNLFDQFLGAKARHLGFMLKGLSQLQRSIQDILQI PFFFFQGEAEETIPKFLEECGASLLVTDFSPLRQIRKCKDEICEKVSDSVTIHEVDAH NIVPVWVASHKLEYSAKTIRGKINKLLPEYLTDFPILQPPNKKWDAMNQLIDWDSVIA DVLRKGAEVPEIEWCEPGEIAAMEVLMGTKDGFLTKRLKNYSTDRNIPLKPRALSCLS PYLHFGQISAQRCALEAHRFRKLHAQAVDTFLEELIIRRELADNFCYYQPHYDSLEGA WEWARKTLMDHASDKREHVYTMEQLEKAQTADPLWNASQLEMVHFGKMHGFMRMYWAK KILEWTKGPKEAIEICIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWRERPVFGKIR YMNYAGCKRKFDVDGYIAYIKRLVGETNKRKAQSQLSQTTKQLRC" mRNA complement(join(31186080..31186437,31186526..31186607, 31187014..31187072,31187263..31187299,31187375..31187532, 31187636..31187876,31187957..31188297,31188683..31189155)) /locus_tag="TCM_016083" /product="Photolyase 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30190.m011036" /inference="similar to AA sequence:Phytozome:POPTR_0001s08030.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc559t17; inference alignment:Newbler:10:TSA:cgbaL_g02321t00002" CDS complement(join(31186327..31186437,31186526..31186607, 31187014..31187072,31187263..31187299,31187375..31187532, 31187636..31187876,31187957..31188297,31188683..31189006)) /locus_tag="TCM_016083" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Photolyase 1 isoform 3" /protein_id="EOY24491.1" /db_xref="Phytozome:POPTR_0001s08030.2" /db_xref="TAIR:AT1G12370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SB00" /translation="MASLSSPSTEPKSLPPGRIRVLKEGSQPLKKGPVVYWMFRDQRL KDNWALIHAVDQANKANVPVSVAFNLFDQFLGAKARHLGFMLKGLSQLQRSIQDILQI PFFFFQGEAEETIPKFLEECGASLLVTDFSPLRQIRKCKDEICEKVSDSVTIHEVDAH NIVPVWVASHKLEYSAKTIRGKINKLLPEYLTDFPILQPPNKKWDAMNQLIDWDSVIA DVLRKGAEVPEIEWCEPGEIAAMEVLMGTKDGFLTKRLKNYSTDRNIPLKPRALSCLS PYLHFGQISAQRCALEAHRFRKLHAQAVDTFLEELIIRRELADNFCYYQPHYDSLEGA WEWARKTLMDHASDKREHVYTMEQLEKAQTADPLWNASQLEMVHFGKMHGFMRMYWAK KILEWTKGPKEAIEICIYLNDKYEIDGRDPNGYVGCMWSICGVHDQVCLYGLSYVSYR " mRNA complement(join(31186721..31187072,31187263..31187299, 31187375..31187463,31187636..31187876,31187957..31188297, 31188683..31189567)) /locus_tag="TCM_016083" /product="Photolyase 1 isoform 4" /inference="alignment:exonerate- protein:2:ricco:30190.m011036" /inference="similar to AA sequence:Phytozome:POPTR_0001s08030.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:PASA:2:TSA:puevd3b015541t1a2; inference alignment:Newbler:10:TSA:cgbaL_g02321t00002" CDS complement(join(31186995..31187072,31187263..31187299, 31187375..31187463,31187636..31187876,31187957..31188297, 31188683..31189006)) /locus_tag="TCM_016083" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Photolyase 1 isoform 4" /protein_id="EOY24492.1" /db_xref="Phytozome:POPTR_0001s08030.1" /db_xref="TAIR:AT1G12370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SB00" /translation="MASLSSPSTEPKSLPPGRIRVLKEGSQPLKKGPVVYWMFRDQRL KDNWALIHAVDQANKANVPVSVAFNLFDQFLGAKARHLGFMLKGLSQLQRSIQDILQI PFFFFQGEAEETIPKFLEECGASLLVTDFSPLRQIRKCKDEICEKVSDSVTIHEVDAH NIVPVWVASHKLEYSAKTIRGKINKLLPEYLTDFPILQPPNKKWDAMNQLIDWDSVIA DVLRKGAEVPEIEWCEPGEIAAMEVLMGTKDGFLTKRLKNYSTDRNIPLKPRALSCLS PYLHFGQISAQRCALEAHRFRKLHAQPHYDSLEGAWEWARKTLMDHASDKREHVYTME QLEKAQTADPLWNASQLEMVHFGKMHGFMRQVTSQ" mobile_element complement(31195039..31195066) /note="source:CACAO_Again_on_S_E63_scaffold_2 366 416" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31195067..31195097) /note="source:CACAO_M_S_E144962_F231_scaffold_10 1445 1475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31198842..31198956) /note="source:CACAO_M_E43482_F345_scaffold_5 1167 1226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31198869..31198922 /note="source:CACAO_M_E43428_F369_scaffold_5 1279 1332" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31199210..31204195) /locus_tag="TCM_016085" /note="dbxref CacaoGD:Thecc1EG016085" mRNA complement(join(31199210..31199720,31201757..31204195)) /locus_tag="TCM_016085" /product="F5O11.10 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004906001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014982t2" /inference="similar to AA sequence:ricco:30190.m011038" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc813t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1064t5; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc402t3" mRNA complement(join(31199210..31199720,31199793..31200159, 31201780..31204182)) /locus_tag="TCM_016085" /product="F5O11.10 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004906001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014982t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s08040.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1064t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1064t5" mRNA complement(join(31199210..31200159,31201734..31204182)) /locus_tag="TCM_016085" /product="F5O11.10 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004906001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014982t2" /inference="similar to AA sequence:ricco:30190.m011038" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1064t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc402t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1064t5" CDS complement(join(31199595..31199720,31201757..31204084)) /locus_tag="TCM_016085" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011038; paralog of Thecc1EG014982t2" /codon_start=1 /product="F5O11.10 isoform 2" /protein_id="EOY24494.1" /db_xref="TAIR:AT1G12380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNA8" /translation="MAATTNTTTTPVDAVSADELTAKAVHKRYEGLVMVRTKAIKGKG AWYWAHLEPMLVHNTDTGLPKAVKLRCSLCDAVFSASNPSRTASEHLKRGTCPNFNSL AKPISSVSPSPTTVATATATQSNRKRSSSSVTVTATGGVLVGSGSGSGSGLGCSYQVT PLAIVDPSRFCGELAYSPSPGAVVTASGGSLVPQHQQHLVLSGGKEDLGALAMLEDSV KKLKSPKTSPGPTLSKSQIECAVDFLADWIYECCGSVSFSSLEHPKFRAFLNQVGLPP VSRRELAGSRLDVKYEEVKSESEARIRDAMFFQVASDGWKAKSFASGEESLVNLMVNL PNGTSLYRRAVFLSGAVPSKYAEEVLWETVTGICGNAVQQCAGIVADKFKAKALRNLE NQHHWMVNLSCQFQGLNSLIKDFSKELPLFKTVTENALKLANFINNTSQIRISFQKYQ LQECGSADLLRVPLRDHESLNFGPVYTMIEDILNSARALQLLLLDETYKMVSMEDPVA RDVAEMIRDMGFWNDLEAVHSLVKLIKEMAQEIETERPLVGKCLPLWDDLRTKVKDWC SKFHIAEGQVEKVIERRFKKNYHPAWAAAYILDPLYLIRDTSGKYLPPFKCLTLEQEK DVDKLITRLVSREEAHIALMELMKWRTEGLDPVYAQAVQMKERDPVTGKMKIANPQSS RLIWETHLTEFKSLGKVAVRLIFLHATSCGFKCSWSLLRWVGAHGHSRVGMDRAQKLI FVAAHSKLERRDFSSDEEKDAELFALANGEDDVLNESHWLMPPMIARKVLRGPKAKED CRHEAAHKMLESDPTTISN" CDS complement(join(31200116..31200159,31201780..31204084)) /locus_tag="TCM_016085" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014982t2" /codon_start=1 /product="F5O11.10 isoform 1" /protein_id="EOY24493.1" /db_xref="Phytozome:POPTR_0001s08040.1" /db_xref="TAIR:AT1G12380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNA8" /translation="MAATTNTTTTPVDAVSADELTAKAVHKRYEGLVMVRTKAIKGKG AWYWAHLEPMLVHNTDTGLPKAVKLRCSLCDAVFSASNPSRTASEHLKRGTCPNFNSL AKPISSVSPSPTTVATATATQSNRKRSSSSVTVTATGGVLVGSGSGSGSGLGCSYQVT PLAIVDPSRFCGELAYSPSPGAVVTASGGSLVPQHQQHLVLSGGKEDLGALAMLEDSV KKLKSPKTSPGPTLSKSQIECAVDFLADWIYECCGSVSFSSLEHPKFRAFLNQVGLPP VSRRELAGSRLDVKYEEVKSESEARIRDAMFFQVASDGWKAKSFASGEESLVNLMVNL PNGTSLYRRAVFLSGAVPSKYAEEVLWETVTGICGNAVQQCAGIVADKFKAKALRNLE NQHHWMVNLSCQFQGLNSLIKDFSKELPLFKTVTENALKLANFINNTSQIRISFQKYQ LQECGSADLLRVPLRDHESLNFGPVYTMIEDILNSARALQLLLLDETYKMVSMEDPVA RDVAEMIRDMGFWNDLEAVHSLVKLIKEMAQEIETERPLVGKCLPLWDDLRTKVKDWC SKFHIAEGQVEKVIERRFKKNYHPAWAAAYILDPLYLIRDTSGKYLPPFKCLTLEQEK DVDKLITRLVSREEAHIALMELMKWRTEGLDPVYAQAVQMKERDPVTGKMKIANPQSS RLIWETHLTEFKSLGKVAVRLIFLHATSCGFKCSWSLLRWVGAHGHSRVGMDRAQKLI FVAAHSKLERRDFSSDEEKDAELFALANEACDKDIVGLERPP" CDS complement(join(31200150..31200159,31201734..31204084)) /locus_tag="TCM_016085" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m011038; paralog of Thecc1EG014982t2" /codon_start=1 /product="F5O11.10 isoform 3" /protein_id="EOY24495.1" /db_xref="TAIR:AT1G12380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNA8" /translation="MAATTNTTTTPVDAVSADELTAKAVHKRYEGLVMVRTKAIKGKG AWYWAHLEPMLVHNTDTGLPKAVKLRCSLCDAVFSASNPSRTASEHLKRGTCPNFNSL AKPISSVSPSPTTVATATATQSNRKRSSSSVTVTATGGVLVGSGSGSGSGLGCSYQVT PLAIVDPSRFCGELAYSPSPGAVVTASGGSLVPQHQQHLVLSGGKEDLGALAMLEDSV KKLKSPKTSPGPTLSKSQIECAVDFLADWIYECCGSVSFSSLEHPKFRAFLNQVGLPP VSRRELAGSRLDVKYEEVKSESEARIRDAMFFQVASDGWKAKSFASGEESLVNLMVNL PNGTSLYRRAVFLSGAVPSKYAEEVLWETVTGICGNAVQQCAGIVADKFKAKALRNLE NQHHWMVNLSCQFQGLNSLIKDFSKELPLFKTVTENALKLANFINNTSQIRISFQKYQ LQECGSADLLRVPLRDHESLNFGPVYTMIEDILNSARALQLLLLDETYKMVSMEDPVA RDVAEMIRDMGFWNDLEAVHSLVKLIKEMAQEIETERPLVGKCLPLWDDLRTKVKDWC SKFHIAEGQVEKVIERRFKKNYHPAWAAAYILDPLYLIRDTSGKYLPPFKCLTLEQEK DVDKLITRLVSREEAHIALMELMKWRTEGLDPVYAQAVQMKERDPVTGKMKIANPQSS RLIWETHLTEFKSLGKVAVRLIFLHATSCGFKCSWSLLRWVGAHGHSRVGMDRAQKLI FVAAHSKLERRDFSSDEEKDAELFALANGEDDVLNEVLVETSSVSM" gene complement(31210309..31215411) /locus_tag="TCM_016086" /note="dbxref CacaoGD:Thecc1EG016086" mRNA complement(join(31210309..31210971,31211428..31211460, 31211564..31211711,31213481..31213803,31214582..31215284)) /locus_tag="TCM_016086" /product="Sterol-4alpha-methyl oxidase 1-1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005511t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08050.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12499t00001" mRNA complement(join(31210339..31210971,31211349..31211460, 31211564..31211711,31213481..31213803,31214582..31215411)) /locus_tag="TCM_016086" /product="Sterol-4alpha-methyl oxidase 1-1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005511t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11570.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc117t2; inference alignment:Newbler:10:TSA:cgbaL_g12499t00001" mRNA complement(join(31210748..31210971,31211428..31211711, 31213481..31213803,31214582..31215411)) /locus_tag="TCM_016086" /product="Sterol-4alpha-methyl oxidase 1-1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005511t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11570.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc72t10_C1; inference alignment:Newbler:10:TSA:cgbaL_g12499t00001" CDS complement(join(31210891..31210971,31211428..31211460, 31211564..31211711,31213481..31213803,31214582..31214911)) /locus_tag="TCM_016086" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005511t1" /codon_start=1 /product="Sterol-4alpha-methyl oxidase 1-1 isoform 1" /protein_id="EOY24496.1" /db_xref="Phytozome:POPTR_0001s08050.1" /db_xref="TAIR:AT4G12110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVT4" /translation="MLPFETIEEATIFLGRNLTVAETLWFNYSAKKSDYCLYCHNILF LFLIFSVVPVPLVFVEMMRSLGFDKYKIQPKVSLSLSDMFRCYKDVMRMFVLVVGPLQ LVSYPSIKMIGIRTGLPLPSAWEILAQLGVYFMIEDYTNYWIHRFLHGKWGYEKIHRV HHEFTAPIGFAAPYAHWAEVLILGIPSFLGPAIVPGHIITFWLWIALRQIEAIETHSG YDFPWTPTRYIPFYGGADYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRYHKKVL RKLKEESRTNGAQNGGSYYVPTQDLKSE" mRNA complement(join(31210948..31211460,31211564..31211711, 31213481..31213803,31214582..31215411)) /locus_tag="TCM_016086" /product="Sterol-4alpha-methyl oxidase 1-1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005511t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11570.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc72t8; inference alignment:Newbler:10:TSA:cgbaL_g12499t00001" CDS complement(join(31210955..31210971,31211349..31211460, 31211564..31211711,31213481..31213803,31214582..31214911)) /locus_tag="TCM_016086" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005511t1" /codon_start=1 /product="Sterol-4alpha-methyl oxidase 1-1 isoform 2" /protein_id="EOY24497.1" /db_xref="Phytozome:POPTR_0003s11570.1" /db_xref="TAIR:AT4G12110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVT4" /translation="MLPFETIEEATIFLGRNLTVAETLWFNYSAKKSDYCLYCHNILF LFLIFSVVPVPLVFVEMMRSLGFDKYKIQPKVSLSLSDMFRCYKDVMRMFVLVVGPLQ LVSYPSIKMIGIRTGLPLPSAWEILAQLGVYFMIEDYTNYWIHRFLHGKWGYEKIHRV HHEFTAPIGFAAPYAHWAEVLILGIPSFLGPAIVPGHIITFWLWIALRQIEAIETHSG YDFPWTPTRYIPFYGGADYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRYHKKVL RKVSCCTSFVVYPLLLDKASFLDKFGLAIERGI" CDS complement(join(31211341..31211460,31211564..31211711, 31213481..31213803,31214582..31214911)) /locus_tag="TCM_016086" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005511t1" /codon_start=1 /product="Sterol-4alpha-methyl oxidase 1-1 isoform 3" /protein_id="EOY24498.1" /db_xref="Phytozome:POPTR_0003s11570.1" /db_xref="TAIR:AT4G12110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVT4" /translation="MLPFETIEEATIFLGRNLTVAETLWFNYSAKKSDYCLYCHNILF LFLIFSVVPVPLVFVEMMRSLGFDKYKIQPKVSLSLSDMFRCYKDVMRMFVLVVGPLQ LVSYPSIKMIGIRTGLPLPSAWEILAQLGVYFMIEDYTNYWIHRFLHGKWGYEKIHRV HHEFTAPIGFAAPYAHWAEVLILGIPSFLGPAIVPGHIITFWLWIALRQIEAIETHSG YDFPWTPTRYIPFYGGADYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRYHKKVL RKVSCCTSFVVYPLLLDKASFLDKFGLASG" CDS complement(join(31211525..31211711,31213481..31213803, 31214582..31214911)) /locus_tag="TCM_016086" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG005511t1" /codon_start=1 /product="Sterol-4alpha-methyl oxidase 1-1 isoform 4" /protein_id="EOY24499.1" /db_xref="Phytozome:POPTR_0003s11570.1" /db_xref="TAIR:AT4G12110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVT4" /translation="MLPFETIEEATIFLGRNLTVAETLWFNYSAKKSDYCLYCHNILF LFLIFSVVPVPLVFVEMMRSLGFDKYKIQPKVSLSLSDMFRCYKDVMRMFVLVVGPLQ LVSYPSIKMIGIRTGLPLPSAWEILAQLGVYFMIEDYTNYWIHRFLHGKWGYEKIHRV HHEFTAPIGFAAPYAHWAEVLILGIPSFLGPAIVPGHIITFWLWIALRQIEAIETHSG YDFPWTPTRYIPFYGGADYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKVMKQCIILL FFF" mRNA complement(join(31213215..31213803,31214582..31215411)) /locus_tag="TCM_016086" /product="Sterol-4alpha-methyl oxidase 1-1 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005511t1" /inference="similar to AA sequence:Phytozome:GSVIVT01006068001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc117t5; inference alignment:Newbler:10:TSA:cgbaL_g12499t00001" CDS complement(join(31213393..31213803,31214582..31214911)) /locus_tag="TCM_016086" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG005511t1" /codon_start=1 /product="Sterol-4alpha-methyl oxidase 1-1 isoform 5" /protein_id="EOY24500.1" /db_xref="Phytozome:GSVIVT01006068001" /db_xref="TAIR:AT4G12110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVT4" /translation="MLPFETIEEATIFLGRNLTVAETLWFNYSAKKSDYCLYCHNILF LFLIFSVVPVPLVFVEMMRSLGFDKYKIQPKVSLSLSDMFRCYKDVMRMFVLVVGPLQ LVSYPSIKMIGIRTGLPLPSAWEILAQLGVYFMIEDYTNYWIHRFLHGKWGYEKIHRV HHEFTAPIGFAAPYAHWAEVLILGIPSFLGPAIVPGHIITFWLWIALRQIEAIETHSG YACYSYTFLYYFIFPICSLPFPLVLVTN" mobile_element 31216135..31216286 /note="source:scaffold_1_CACTA_0008 14037 14193" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31218167..31218311) /note="source:scaffold_1_CACTA_0016 1415 1591" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31220536..31220644 /note="source:CACAO_M_E34420_F305_scaffold_5 1465 1561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31221138..31221269) /note="source:CACAO_M_S_E50888_F253_scaffold_4 4940 5071" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 31221269..31221496 /note="source:CACAO_M_E44210_F112_scaffold_5 10000 10226" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31221276..31221560) /note="source:scaffold_5_CACTA_0614 6119 6409" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31221551..31221713 /note="source:CACAO_M_E69938_F9_scaffold_9 3989 4148" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 31224423..31226866 /locus_tag="TCM_016087" /note="dbxref CacaoGD:Thecc1EG016087" mRNA join(31224423..31224460,31224740..31225449, 31225612..31226337,31226602..31226866) /locus_tag="TCM_016087" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028289t1" /inference="similar to AA sequence:Phytozome:Glyma08g41350.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS join(31224790..31225449,31225612..31226337, 31226602..31226679) /locus_tag="TCM_016087" /note="paralog of Thecc1EG028289t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24501.1" /db_xref="Phytozome:Glyma08g41350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6WAY8" /translation="MASSSAGPLNIYKNDYEIELQMRQIQQEKGDCLTQGHISILPER VHLDLQQNDFTEMVGIWEQWRLAHRDNFQNKYGHIAWLLYVPVDDQMLRAIVQFWDPS YRCFVFNKVDMTPTIEEYSSLLRIDHMQPDKIYWRAQKTVHRRKLAKLLGMTTVEVDQ HLKKKGDTECLPWSFLNGYIKKHMEDEQGLLAFAMAIYGLVVFPKVLGHVEVSVIDFF DQLYLSASCPIRELCESEWPDYKRKEEWVARLRRLMSIEVTWRAPWMPRMQVMYKCGD KSWVPLMGPWGAISYAPIMVRRQFGSEQFVPMTHQLDQLEFTYGEPETLKKIEEIAQD WKKTCRVDQGRVTDEVTTGYHTWHDQRVKNVIHPPKNPSKHPVNPEPQDVLLESELTR KRLEKEMMNMKRRHEDELEEVKKETARKVRVALKEQDEWQSKFEEVSVANSSLLARIQ ELQSANNALQHEDELSERLINHLKMVRDQYDKVGFSF" mobile_element complement(31233634..31234910) /note="source:CACAO_M_E58877_F5_scaffold_9 9063 10312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31236437..31236495 /note="source:CACAO_M_E69938_F9_scaffold_9 3761 3827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31236496..31236663 /note="source:CACAO_M_E69938_F9_scaffold_9 3971 4160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31237128..31237458) /note="source:CACAO_M_E12044_F76_scaffold_2 5393 5747" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31238883..31239659 /note="source:CACAO_M_E58957_F253_scaffold_9 681 1456" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31239660..31240270) /note="source:CACAO_M_S_E50888_F253_scaffold_4 3727 4357" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31240277..31242112) /note="source:CACAO_M_S_E50888_F253_scaffold_4 3 1811" /mobile_element_type="retrotransposon:LTR/Copia" gene 31243478..31245695 /locus_tag="TCM_016091" /note="dbxref CacaoGD:Thecc1EG016091" mRNA join(31243478..31243980,31244569..31244782, 31244941..31245446) /locus_tag="TCM_016091" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11590.1" /inference="similar to AA sequence:frave:gene32305" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02033t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9949t1" mRNA join(31243478..31243980,31244569..31244782, 31245049..31245446) /locus_tag="TCM_016091" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11590.1" /inference="similar to AA sequence:frave:gene32305" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02033t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9949t1" mRNA join(31243564..31243980,31244581..31244782, 31244941..31245695) /locus_tag="TCM_016091" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11590.1" /inference="similar to AA sequence:frave:gene32305" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9949t1" CDS join(31243648..31243980,31244569..31244782, 31244941..31245188) /locus_tag="TCM_016091" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene32305" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24503.1" /db_xref="TAIR:AT4G22758.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVT6" /translation="MSEKSLRRRLPRGRRPRLPYPSPSPRLRTPPPHRRSAKRSSKHG RILKRCASEPCLWSSVAEDQQRSNLLGSEVEGALFRPQTCTDVFGSSPCILGFGSPRS SSSPKQGFEFGMQGYNKDAKVVINVSVEGSPGPVRTMVKLGSSVEETIKVVVDKYAEE GRTPKLYHSSGLELHQSYFSLQSLDKSLIIGDAGSRSFYLRKSSSDNSSNVASNSFVS EIGLEGANSPPAVPPPTYLLTAFIARKLSKIVRRTRRLWKVLVCLR" CDS join(31243648..31243980,31244569..31244782, 31245049..31245188) /locus_tag="TCM_016091" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene32305" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY24504.1" /db_xref="TAIR:AT4G22758.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVT6" /translation="MSEKSLRRRLPRGRRPRLPYPSPSPRLRTPPPHRRSAKRSSKHG RILKRCASEPCLWSSVAEDQQRSNLLGSEVEGALFRPQTCTDVFGSSPCILGFGSPRS SSSPKQGFEFGMQGYNKDAKVVINVSVEGSPGPVRTMVKLGSSVEETIKVVVDKYAEE GRTPKLYHSSGLELHQSYFSLQKIGLEGANSPPAVPPPTYLLTAFIARKLSKIVRRTR RLWKVLVCLR" CDS join(31243648..31243980,31244581..31244782, 31244941..31245188) /locus_tag="TCM_016091" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene32305" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24502.1" /db_xref="TAIR:AT4G22758.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVT6" /translation="MSEKSLRRRLPRGRRPRLPYPSPSPRLRTPPPHRRSAKRSSKHG RILKRCASEPCLWSSVAEDQQRSNLLGSEVEGALFRPQTCTDVFGSSPCILGFGSPRS SSSPKQGFEGYNKDAKVVINVSVEGSPGPVRTMVKLGSSVEETIKVVVDKYAEEGRTP KLYHSSGLELHQSYFSLQSLDKSLIIGDAGSRSFYLRKSSSDNSSNVASNSFVSEIGL EGANSPPAVPPPTYLLTAFIARKLSKIVRRTRRLWKVLVCLR" gene 31246771..31249242 /locus_tag="TCM_016092" /note="dbxref CacaoGD:Thecc1EG016092" mRNA join(31246771..31246920,31247647..31248449, 31248844..31249242) /locus_tag="TCM_016092" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400007036" /inference="similar to AA sequence:Phytozome:GSVIVT01019942001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3664t1_C1" CDS join(31247702..31248449,31248844..31249001) /locus_tag="TCM_016092" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24505.1" /db_xref="Phytozome:GSVIVT01019942001" /db_xref="TAIR:AT2G27830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TWE5" /translation="MPGVRLMRSIDYQCKSYSNIQLIELMHLLINNYSVTIHLCTVSL QCSSQGLVIDLKSHGHRIFQTGRVQNSLNSRDSPRTEQFPGTFALPLLYATKSKTFQN NHISQSHILSFAITMVPRSSGNRRLCSIRVLSASERSIQTSVPEHHSCLVNWRGGLNA VPSTTRLTTSPSARFPVDDGSQRRLSKLLLKVNIDRSLGPVHVVMPAENTVNDLIKAA VEIYVKEKRRPLLEETNPKFFQLHYSQFSLESLEPEEKLINLGSRNFFLYLKPSSSVT SCGSEEAKIACQSMSPLTKFMEFLL" gene 31249595..31252320 /locus_tag="TCM_016093" /note="dbxref CacaoGD:Thecc1EG016093" mRNA join(31249595..31250016,31250575..31250756, 31251742..31251864,31251919..31252136) /locus_tag="TCM_016093" /product="Cornichon family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019941001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005506t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08080.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1773t3_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10128t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1773t4_C2" mRNA join(31249673..31250016,31250575..31250756, 31251742..31251864,31251962..31252320) /locus_tag="TCM_016093" /product="Cornichon family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019941001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005506t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10128t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10128t1" CDS join(31249945..31250016,31250575..31250756, 31251742..31251864,31251962..31252043) /locus_tag="TCM_016093" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005506t1" /codon_start=1 /product="Cornichon family protein isoform 1" /protein_id="EOY24506.1" /db_xref="Phytozome:POPTR_0001s08080.1" /db_xref="TAIR:AT1G12390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWT5" /translation="MGDLFIWLISFFILIALLVLLVYQLMCLADLEFDYINPYDSSSR INKVVLPEYVLQGFLCLFYLLTGHWAMSLLCAPYLYYNVRLYTRKEHLVDVTEIFNLL HWEKKQRLFKLAYLVVLLFFAIFWDDLVRVRRCRRVMGDNGLLNLKYLLL" CDS join(31249945..31250016,31250575..31250756, 31251742..31251864,31251919..31251934) /locus_tag="TCM_016093" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005506t1" /codon_start=1 /product="Cornichon family protein isoform 2" /protein_id="EOY24507.1" /db_xref="Phytozome:POPTR_0001s08080.1" /db_xref="TAIR:AT1G12390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWT5" /translation="MGDLFIWLISFFILIALLVLLVYQLMCLADLEFDYINPYDSSSR INKVVLPEYVLQGFLCLFYLLTGHWAMSLLCAPYLYYNVRLYTRKEHLVDVTEIFNLL HWEKKQRLFKLAYLVVLLFFAIFCFSNC" gene 31252699..31256468 /locus_tag="TCM_047019" /note="dbxref CacaoGD:Thecc1EG047019" mRNA join(31252699..31252748,31255516..31255593, 31256077..31256447) /locus_tag="TCM_047019" /product="Nucleotide excision repair, TFIIH, subunit TTDA isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019940001" /inference="similar to AA sequence:Phytozome:GSVIVT01019940001" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17596t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc638t4" gene 31252719..31256309 /locus_tag="TCM_047020" /note="dbxref CacaoGD:Thecc1EG047020" mRNA join(31252719..31252748,31252982..31255020, 31255516..31255593,31256077..31256309) /locus_tag="TCM_047020" /product="Tetratricopeptide repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11580.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11580.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc889t3" CDS 31253214..31254944 /locus_tag="TCM_047020" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY24510.1" /db_xref="Phytozome:POPTR_0003s11580.1" /db_xref="TAIR:AT4G22760.1" /translation="MLVPRLKSFLNNQLTIKQAKQIHAQILISSLNHLQPLLVHQFLL STNNYSSSVFLYVRQILYHLQKPDAFSWGCAVRFLSQHGQFAEAFSLYVKMQKLGLYP TTHAISSALRACARTECKTGGISIHAQVHRYGVCNCVFVQTALVDLYTKLGDMDTAKK VFDEMPEKNVVSWNSILSGYLKAGNLGEAHRVFDDIPKKDVISWNAILSAYAKMGNMD QTLSFFQQMPEKNLASWNTMISGFVERGEIESARSFFDMMHRRNNVSWITMIAGYSKH GEVKSARELFDKMGEKDHLAFNAMISCYAQNSQPTEALKLFDEMLKAGVCIQPDGITL ASVISACSQLRELRFGSWIESYISKLGIQMDDHMATALIDLYAKCGSIDKAYHLFHGL RKKDVVAYSAMISGCAINGKAVDAIMLFQKMVDAQIQPNLATFTGLLTAYNHAGLVEE GYRCFSSMKDNGLVPSTDHYAIMVDLLGRAGRLEDAYELIKSMPMKPHTGVWGGLLLA CSLHNNVEFGEIAAQHCFELEPGTAGYYSLLANIYASVGRWRDARRLRKNMERKKLAK IPGCSWTEST" mRNA join(31254868..31255020,31255516..31255593, 31256077..31256468) /locus_tag="TCM_047019" /product="Nucleotide excision repair, TFIIH, subunit TTDA isoform 1" /inference="similar to AA sequence:Phytozome:GSVIVT01019940001" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10118t2; alternateUTRof:Thecc1EG047019t1" CDS join(31255559..31255593,31256077..31256254) /locus_tag="TCM_047019" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nucleotide excision repair, TFIIH, subunit TTDA isoform 1" /protein_id="EOY24508.1" /db_xref="Phytozome:GSVIVT01019940001" /db_xref="TAIR:AT1G12400.1" /translation="MVNATKGLFISCDIPMAQFIVNLNASMPASQKFIIHVLDNTHFF VQPHAAEMIRSAISEFRDQNSYDKPT" CDS join(31255559..31255593,31256077..31256254) /locus_tag="TCM_047019" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nucleotide excision repair, TFIIH, subunit TTDA isoform 1" /protein_id="EOY24509.1" /db_xref="Phytozome:GSVIVT01019940001" /db_xref="TAIR:AT1G12400.1" /translation="MVNATKGLFISCDIPMAQFIVNLNASMPASQKFIIHVLDNTHFF VQPHAAEMIRSAISEFRDQNSYDKPT" gene 31256596..31259900 /locus_tag="TCM_016095" /note="dbxref CacaoGD:Thecc1EG016095" mRNA join(31256596..31257011,31257104..31257147, 31257259..31257331,31257874..31257994,31258294..31258431, 31258545..31258661,31259014..31259082,31259172..31259267, 31259557..31259900) /locus_tag="TCM_016095" /product="CLP protease proteolytic subunit 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011044" /inference="similar to AA sequence:ricco:30190.m011044" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05033t00001" CDS join(31256968..31257011,31257104..31257147, 31257259..31257331,31257874..31257994,31258294..31258431, 31258545..31258661,31259014..31259082,31259172..31259267, 31259557..31259694) /locus_tag="TCM_016095" /note="dbxref ricco:30190.m011044" /codon_start=1 /product="CLP protease proteolytic subunit 2" /protein_id="EOY24511.1" /db_xref="TAIR:AT1G12410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XJ36" /translation="MAISLNTNLHQPSLSCGTKLYSGLRLQSPCLFATGRPNLSADFY SRVNKSLQCGTRNCKPTRSRVGMMPIGTPRVPYRVPGEGTWQWVDIWNALYRERVIFI GQHIDEEFSNQILATMLYLDSIDDNKRLYFYINGPGGDLTPSLAIYDTMQSLKSPVGT HCVGYAYNLAGFLLAAGEKGNRFAMPLSRIALQSPAGAARGQADDIRNEANELLRIRD YLFSELAKNTGQPVEKINKDLSRMKRFNAQEALEYGLIDRVVRPPRIKADAPRKDAGT GLG" gene complement(31260037..31261011) /locus_tag="TCM_016096" /note="dbxref CacaoGD:Thecc1EG016096" mRNA complement(31260037..31261011) /locus_tag="TCM_016096" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011045" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2272t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5142t1" CDS complement(31260104..31260580) /locus_tag="TCM_016096" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24512.1" /translation="MKLVHSPIPARIILCVVALLVLKSLSTSISERCNPEFSYNPLSL FILFNAITVAVIVGSHKPSIDEIDGFFPYSCSLYGGPFINSTEKYSDVDDFEDDTASS DGYHADEDDDDGYHEDEAEDDSCNDEGEYDDLQKRIEAFIAKVNNGWREERLRESL" mobile_element complement(31261144..31261592) /note="source:scaffold_2_CACTA_0244 14246 14708" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31261593..31261718) /note="source:INTACT135F_F90_scaffold_2-int 13386 14007" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31262014..31262415) /note="source:scaffold_2_CACTA_0244 13470 13864" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31265810..31266953 /note="source:CACAO_on_E683_scaffold_9 1203 2305" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(31267212..31272255) /locus_tag="TCM_016097" /note="dbxref CacaoGD:Thecc1EG016097" mRNA complement(join(31267212..31268063,31268242..31268403, 31269357..31269488,31269702..31269769,31271529..31272255)) /locus_tag="TCM_016097" /product="AT-hook motif nuclear-localized protein 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011046" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005503t1" /inference="similar to AA sequence:Phytozome:Glyma05g04040.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b015554t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9971t2" mRNA complement(join(31267212..31268063,31268242..31268403, 31269357..31269488,31269702..31269769,31270541..31270574, 31271142..31271243,31271310..31271374,31271529..31272255)) /locus_tag="TCM_016097" /product="AT-hook motif nuclear-localized protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011046" /inference="similar to AA sequence:ricco:30190.m011046" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9971t2" mRNA complement(join(31267391..31268063,31268242..31268403, 31269357..31269488,31269702..31269772,31271529..31272246)) /locus_tag="TCM_016097" /product="AT-hook motif nuclear-localized protein 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30190.m011046" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005503t1" /inference="similar to AA sequence:Phytozome:Glyma05g04040.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10255t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9971t2" CDS complement(join(31267836..31268063,31268242..31268403, 31269357..31269488,31269702..31269769,31271529..31271934)) /locus_tag="TCM_016097" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005503t1" /codon_start=1 /product="AT-hook motif nuclear-localized protein 1 isoform 2" /protein_id="EOY24514.1" /db_xref="Phytozome:Glyma05g04040.1" /db_xref="TAIR:AT4G12080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYJ2" /translation="MESREAVSTTTTTTATGGVTVVGSDAPSDYHIAPRSENSTQNPN PTPGSAPPPQPPPQTAAQPVPPPVSVSGLPVKKKRGRPRKYGPDGSVTMALSPKPIST AAPPPLIDFSAGKRGKVKSPTSVSKAKYELENLGEWVACSVGANFTPHIITVNAGEDV TMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSD SGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPKKQK HEPISAATPMAAIPVSSADPKSNLSTSSFRGDSWSSLPSDSRNKPTDINVSLPAG" CDS complement(join(31267836..31268063,31268242..31268403, 31269357..31269488,31269702..31269772,31271529..31271934)) /locus_tag="TCM_016097" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005503t1" /codon_start=1 /product="AT-hook motif nuclear-localized protein 1 isoform 3" /protein_id="EOY24515.1" /db_xref="Phytozome:Glyma05g04040.1" /db_xref="TAIR:AT4G12080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYJ2" /translation="MESREAVSTTTTTTATGGVTVVGSDAPSDYHIAPRSENSTQNPN PTPGSAPPPQPPPQTAAQPVPPPVSVSGLPVKKKRGRPRKYGPDGSVTMALSPKPIST AAPPPLIDFSAGKRGKVKSPTSVSKAKYELENLVGEWVACSVGANFTPHIITVNAGED VTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPS DSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPKKQ KHEPISAATPMAAIPVSSADPKSNLSTSSFRGDSWSSLPSDSRNKPTDINVSLPAG" CDS complement(join(31267836..31268063,31268242..31268403, 31269357..31269488,31269702..31269769,31270541..31270574, 31271142..31271243,31271310..31271374,31271529..31271934)) /locus_tag="TCM_016097" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011046" /codon_start=1 /product="AT-hook motif nuclear-localized protein 1 isoform 1" /protein_id="EOY24513.1" /db_xref="TAIR:AT4G12080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYJ2" /translation="MESREAVSTTTTTTATGGVTVVGSDAPSDYHIAPRSENSTQNPN PTPGSAPPPQPPPQTAAQPVPPPVSVSGLPVKKKRGRPRKYGPDGSVTMALSPKPIST AAPPPLIDFSAGKRGKVKSPTSVSKAKYELENLGREEVLSFRCVIVLGRSGTFKLWEF LWVGNMGMMESSCYECPLPLGILYGKKNLWKAMTAEASMLGVSEWVACSVGANFTPHI ITVNAGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILS LSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQ HEQKPKKQKHEPISAATPMAAIPVSSADPKSNLSTSSFRGDSWSSLPSDSRNKPTDIN VSLPAG" mobile_element 31275073..31275230 /note="source:INTACT446_F218_scaffold_9-int 7170 7318" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 31275291..31275450 /note="source:INTACT446_F218_scaffold_9-int 7192 7318" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(31284784..31288301) /locus_tag="TCM_016098" /note="dbxref CacaoGD:Thecc1EG016098" mRNA complement(join(31284784..31285710,31285815..31285919, 31286009..31286575,31286677..31286744,31286865..31286979, 31287135..31287180,31287799..31288301)) /locus_tag="TCM_016098" /product="ACT domain repeat 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008595t2" /inference="similar to AA sequence:ricco:30190.m011048" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05656t00001" CDS complement(join(31285348..31285710,31285815..31285919, 31286009..31286575,31286677..31286744,31286865..31286979, 31287135..31287180,31287799..31287860)) /locus_tag="TCM_016098" /note="dbxref ricco:30190.m011048; paralog of Thecc1EG008595t2" /codon_start=1 /product="ACT domain repeat 8" /protein_id="EOY24516.1" /db_xref="TAIR:AT1G12420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49659" /translation="MEWHACLDEYEKLVRRMSTPRVVIDNTVCPTATLVKVDSARRHG ILLDAVQVLTDLNLSIKKAYISSDGQWFMDVFHVTDLNGNKLTDESVISYIEQSLETT QPDRGQGFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK DCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKTSVSMAVTHTERRLHQMMFADRD YERKPILQHRADSPVVTVQNWVERGYSVVNVQSKDRTNLLFDVVCTLTDMQYVVFHAT INTAGDNAYLEFYIRHTDGTPISSEPERHRVIQCLQAAVERRASEGIRLELCTDDRQG LLADVTRTFRENGLNVTRAEISTTRDMAKNVFYVTDAIGNLADPKIIEAVRQKIGLGK LKIKELPLIYHQKAEREEQAVGVGGTVLLSLGSLVRRNLYNLGLIKSYS" mobile_element 31286858..31286982 /note="source:scaffold_2_CACTA_0256 1820 1944" /mobile_element_type="transposon:TIR/CACTA" gene 31294946..31298138 /locus_tag="TCM_016099" /note="dbxref CacaoGD:Thecc1EG016099" mRNA join(31294946..31295424,31295522..31295560, 31295649..31295758,31297195..31297374,31297767..31298138) /locus_tag="TCM_016099" /product="Double Clp-N motif protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g42210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014991t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018510001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08632t00001" CDS join(31295201..31295424,31295522..31295560, 31295649..31295758,31297195..31297374,31297767..31297915) /locus_tag="TCM_016099" /note="paralog of Thecc1EG014991t1" /codon_start=1 /product="Double Clp-N motif protein" /protein_id="EOY24517.1" /db_xref="Phytozome:GSVIVT01018510001" /db_xref="TAIR:AT4G12060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B483" /translation="MAATHCLSKPATVTPVITQSENKSKPSSSSSFLKPHGLQSPWLG IKLSLRSSKPRPHLPNHRPITATVSFSLPTAKPDRVASTEKVPKWSRRAIKSFVMAEL EARKLKYPTTGTEAFLMGILIEGTSLAAKFLRANGITLFKVREETVKVLGKADMYYFS PEHPPLTEAAQRALDWAVDQKLKSGDDGEVTTTHLLLGIWSEVESPGHKIMTALGFID VKAKELASLSSEPES" gene complement(31298289..31302651) /locus_tag="TCM_016100" /note="dbxref CacaoGD:Thecc1EG016100" mRNA complement(join(31298289..31299938,31302151..31302651)) /locus_tag="TCM_016100" /product="Multidrug and toxin extrusion protein 1" /inference="alignment:exonerate-protein:2:frave:gene32314" /inference="similar to AA sequence:Phytozome:POPTR_0003s11660.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS complement(31298422..31299936) /locus_tag="TCM_016100" /codon_start=1 /product="Multidrug and toxin extrusion protein 1" /protein_id="EOY24518.1" /db_xref="Phytozome:POPTR_0003s11660.1" /db_xref="TAIR:AT4G22790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49660" /translation="MMSATSRLEENPTEKTSQSPSVSNPTQRWPANLMQIMLSELKTQ RRIAVPLVAMNLTWFSKIAVTTAFLGRLGELQLAGGTLGFTFANVTGFSVLNGLCGAM EPVCGQAFGAKNFRLLHRTLLMAIALLVFATLPISFLWLNVDKILVHFGQKEDISAVA KTYLFYLLPDLVVTSLLCPLKAYLSSQSITIPIMFSSALALAFHIPINIFLAKAKGLE GVSMAIWISDLIAAILLVLYVLVAENRKGGKWKEGGWWDQGVQDWLRLLKLSGPCCLT TCLEWWCYEILVLLTGRLPNAKQAVGVMAIVLNFDYLLYSVMLSLATCASTRVSNELG ANQPVSACQSAYVSLAVSTLSGCIGAMVMVGARGVWGSLFSHDKGILRGVKNMMLLMA LVEVVNFPLAVCGGIVRGTARPWLAMYANLGGFYLLALPMAVVLAFKTALGLNGLLLG FLVGMVTCLALLLVMVVRIKWHEEAGKAQILASNVAVVEDGNLKTVDTVNPTEV" gene 31303665..31304402 /locus_tag="TCM_016101" /note="dbxref CacaoGD:Thecc1EG016101" mRNA 31303665..31304402 /locus_tag="TCM_016101" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022623" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005493t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s06640.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10132t1" CDS 31303716..31304102 /locus_tag="TCM_016101" /note="paralog of Thecc1EG005493t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24519.1" /db_xref="Phytozome:POPTR_0014s06640.1" /translation="MSCLIFLSKQARKFLLKLKVLSIEKGYKKRDPKVLLAGFDCSSS SFASMEVSSQLKQVFKLIDTNGDEKISSLELSEVLSSLGRKRSAAKKEADAMVRELDR NGDGYIDFKEFMDAVGVNTVQFSDKR" gene 31311967..31313287 /locus_tag="TCM_016102" /note="dbxref CacaoGD:Thecc1EG016102" mRNA 31311967..31313287 /locus_tag="TCM_016102" /product="AT-hook DNA-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005492t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11680.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2091t1" CDS 31312060..31312968 /locus_tag="TCM_016102" /note="paralog of Thecc1EG005492t1" /codon_start=1 /product="AT-hook DNA-binding family protein" /protein_id="EOY24520.1" /db_xref="Phytozome:POPTR_0003s11680.1" /db_xref="TAIR:AT4G22810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUL1" /translation="MDPVTSHGLSLPPPFNIRDFNLHHQQQQQQEHQFHHQNSEDEQS GSSSGLRKRDRDDSNNINNSSSANNNEGNELSFPGSGEGEITRRPRGRPAGSKNKPKP PIIITRDSANALRTHVMEIGDGCDIVESVATFARRRQRGVCIMSGTGTVTNVTLRQPA SAGAIVTLHGRFEILSLAGSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGTLICSGP VVIMAASFSNAAYERLPLEEEEQLPMQGGAIGSPGAIGGQQQQQQQQQVLAESNAPLF HGLPPNLLNSIQLPTEAFWATGRPPF" gene complement(31314940..31323941) /locus_tag="TCM_016103" /note="dbxref CacaoGD:Thecc1EG016103" mRNA complement(join(31314940..31316087,31316179..31316307, 31316476..31316619,31317000..31317125,31317221..31317346, 31317675..31317767,31317867..31318002,31318391..31318522, 31318625..31318759,31318951..31319049,31319646..31319849, 31320075..31320163,31320394..31320543,31320692..31320848, 31320954..31321175,31321368..31321553,31321887..31322009, 31322464..31322564,31323522..31323941)) /locus_tag="TCM_016103" /product="Armadillo repeat kinesin 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g42240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005491t3" /inference="similar to AA sequence:Phytozome:POPTR_0003s11690.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10189t2" CDS complement(join(31315927..31316087,31316179..31316307, 31316476..31316619,31317000..31317125,31317221..31317346, 31317675..31317767,31317867..31318002,31318391..31318522, 31318625..31318759,31318951..31319049,31319646..31319849, 31320075..31320163,31320394..31320543,31320692..31320848, 31320954..31321175,31321368..31321553,31321887..31322009, 31322464..31322564,31323522..31323732)) /locus_tag="TCM_016103" /note="paralog of Thecc1EG005491t3" /codon_start=1 /product="Armadillo repeat kinesin 3" /protein_id="EOY24521.1" /db_xref="Phytozome:POPTR_0003s11690.1" /db_xref="TAIR:AT1G12430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ06" /translation="MASGGGNYRNGTHRSSLKGTTTTSIDRPLSVNSNPSKPALKTKS LSSVGASSGLRKSSPGSLGAAKDDAGVPGRVRVAVRLRPRNAEESAADADFADCVELQ PELKRLKLRKNNWDTDTYAFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQ TGTGKTYTLGRLGEEDTADRGIMVRAMEDILADVSPESDSVSVSYLQLYMESLQDLLD PTNDNISIVEDPKSGDVSLPGATVVEIRDQQSFLELLHLGEAHRYAANTKLNTESSRS HAILMVHVKRSVKGREPAHSSENGNSTNMAKSLRPPLVRKGKLIVVDLAGSERIDKSG SEGHTLEEAKSINLSLSALGKCINALAENSAHIPVRDSKLTRLLRDSFGGTARTSLVI TIGPSPRHRGETASTIMFGQRAMKVENMLKLKEEFDYKSLARRLDIQLDKLIMEHERK QKAFEDEIERITTDAQVRITEAERNFADAMEKERLKYQKDYMESIKKLEEKWMMNQQK QGGERKEQMVSTAEEVAEVKKLLSKETSLRKAAEEEVNNLKSQLAQLKISEASANSEI LKLQKMLEDEAYQKEKLEGEISMLQSQLLQLSFEADETRRRLDRGGPGKVPGGLDSLI AQVRPQLKDSGNGEKASIAKLFEQVGLQKILSLLEAEDADVRIHAVKVVANLAAEETN QQKIVEAGGLTSLLRLLGSSEDETVHRVAAGAIANLAMNETNQELIMSQGGISLLSMT AANAEDPQTLRMVAGAVANLCGNDKLQNKLRGEGGIKALLGMVKCGHPDVLAQVARGI ANFAKCESRASTQGSKTGRSLLIEDGALPWIVQNANNDASPIRRHIELALCHLAQHEV NAKDMISGGALWELVRILQECSREDIRTLAHRTLTSSPTFLAELRRLRIDF" mobile_element 31319473..31319520 /note="source:CACAO_Mariner_E36_scaffold_2 1165 1211" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(31319503..31319549) /note="source:scaffold_5_CACTA_0580 13312 13358" /mobile_element_type="transposon:TIR/CACTA" gene 31324576..31327247 /locus_tag="TCM_016104" /note="dbxref CacaoGD:Thecc1EG016104" mRNA join(31324576..31325647,31327039..31327247) /locus_tag="TCM_016104" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" CDS 31324975..31325250 /locus_tag="TCM_016104" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24522.1" /translation="MYCEYVIFPESQNTNKSNMQPEWLHLSSVIHCNDYRWPSWVELK AKGNKEIWHLEKRRANPNKGESFERKGWFGNYEKKEMQTQREGKASA" mobile_element complement(31328691..31329215) /note="source:scaffold_8_CACTA_0863 3380 3927" /mobile_element_type="transposon:TIR/CACTA" gene complement(31330107..31331678) /locus_tag="TCM_016105" /note="dbxref CacaoGD:Thecc1EG016105" mRNA complement(join(31330107..31330999,31331650..31331678)) /locus_tag="TCM_016105" /product="A20/AN1-like zinc finger family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040596t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s08210.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc602t13" CDS complement(31330441..31330962) /locus_tag="TCM_016105" /note="paralog of Thecc1EG040596t2" /codon_start=1 /product="A20/AN1-like zinc finger family protein, putative" /protein_id="EOY24523.1" /db_xref="Phytozome:POPTR_0001s08210.1" /db_xref="TAIR:AT4G12040.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NNI8" /translation="MGSEQNEGTSFPPSEPKLCANGCGFFGTAANMNLCSKCYRDLRA GEEQAAKAKAAMEKSLSVKTKQEDVVVETILDVKPVEELPHVGSSSTAVEQPAVVAAG NEQAEPKVSNRCFICRKKVRLTGFKCRCGSTFCGEHRYPEKHECLFDFKGAGRDAIAK ANPVVKADKVERF" mobile_element 31334758..31334817 /note="source:CACAO_M_S_E2082_F233_scaffold_1 1263 1320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31334783..31334829) /note="source:CACAO_M_E12463_F12_scaffold_3 4549 4595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31334886..31335249 /note="source:INTACT6861F_F55_scaffold_78-int 415 761" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 31335350..31335397 /note="source:INTACT518_F239_scaffold_2-int 8058 8106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31335398..31335415) /note="source:scaffold_5_CACTA_0608 951 1011" /mobile_element_type="transposon:TIR/CACTA" gene 31337700..31338511 /locus_tag="TCM_016107" /note="dbxref CacaoGD:Thecc1EG016107" mRNA join(31337700..31338035,31338138..31338511) /locus_tag="TCM_016107" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11710.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019925001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14869t00001" CDS join(31337716..31338035,31338138..31338354) /locus_tag="TCM_016107" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24524.1" /db_xref="Phytozome:GSVIVT01019925001" /translation="MTAEEESLALFSLSLISIATSPPHDASVIKQHKPTLFIGAYIPS FLSISPHHFQYNLTFPSSLSSPSIERNHRRMCNNMDWSPTISASSKRRHRSKQSKVQI YRLSRKRCEENVEKDMERLNLKLYLENQSIIEENEKLRKKANLLHQENLALMSDFQKK FPHLDRFSTTLLLLLRNH" gene complement(31339779..31342980) /locus_tag="TCM_046744" /note="dbxref CacaoGD:Thecc1EG046744" mRNA complement(join(31339779..31340322,31341182..31341250, 31342098..31342176,31342589..31342980)) /locus_tag="TCM_046744" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene32318" /inference="similar to AA sequence:Phytozome:POPTR_0001s08230.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00520t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc926t7; inference alignment:Newbler:10:TSA:cgbaB_g00185t00001" mRNA complement(join(31339779..31340322,31341182..31341250, 31341382..31341472,31342098..31342176,31342589..31342980)) /locus_tag="TCM_046744" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene32318" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400007029" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00520t00002; inference alignment:Newbler:10:TSA:cgbaB_g00185t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc926t7" CDS complement(join(31340215..31340322,31341182..31341250, 31342098..31342176,31342589..31342902)) /locus_tag="TCM_046744" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24525.1" /db_xref="Phytozome:POPTR_0001s08230.1" /db_xref="TAIR:AT4G22830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWI3" /translation="MATTTLLCYPKPIFEQNHSTPTLHKPKIPQKTRHLTRKVSSRRL IWNQETVVGLVGSGLVLALVDPALASELRPLLLGSSLQLSEPANALSLPTWAIHVSSV VEWITAMALVWQYGEKSGFESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQ AALTVIGNATMCFAAFRICNLSDKRSQKL" CDS complement(join(31341192..31341250,31341382..31341472, 31342098..31342176,31342589..31342902)) /locus_tag="TCM_046744" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24526.1" /db_xref="Phytozome:PGSC0003DMP400007029" /db_xref="TAIR:AT4G22830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWI3" /translation="MATTTLLCYPKPIFEQNHSTPTLHKPKIPQKTRHLTRKVSSRRL IWNQETVVGLVGSGLVLALVDPALASELRPLLLGSSLQLSEPANALSLPTWAIHVSSV VEWITAMALVWQYGEKSGFESWKGLSWGMIKMVEDLRCPLLLLRNPSTRSVYPLWRMA SCTSTRWSILCMHMAFLLQF" gene complement(31343827..31347109) /locus_tag="TCM_046747" /note="dbxref CacaoGD:Thecc1EG046747" mRNA complement(join(31343827..31344356,31344849..31345253, 31345332..31345584,31345687..31345880,31346666..31346766, 31346901..31347081)) /locus_tag="TCM_046747" /product="Sodium Bile acid symporter family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11720.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11720.2" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10172t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc521t12; inference alignment:Newbler:10:TSA:cgbaB_g06479t00001" mRNA complement(join(31343938..31344356,31344849..31344931, 31345000..31345253,31345332..31345584,31345687..31345880, 31346204..31346334,31346666..31346766,31346901..31347109)) /locus_tag="TCM_046747" /product="Sodium Bile acid symporter family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11720.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11720.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06479t00001; inference alignment:Newbler:10:TSA:cgbaB_g06479t00001" CDS complement(join(31344294..31344356,31344849..31344931, 31345000..31345253,31345332..31345584,31345687..31345880, 31346204..31346334,31346666..31346766,31346901..31347054)) /locus_tag="TCM_046747" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Sodium Bile acid symporter family isoform 1" /protein_id="EOY24527.1" /db_xref="Phytozome:POPTR_0003s11720.1" /db_xref="TAIR:AT4G22840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49665" /translation="MSSTIGQLSIQRPRFNHVYLQNISFHLPKQVRFPVLPLNSHVPV PVSSISPFGSSRLLVCKCASEKFSGSFERDPGQEYGLDSNQTVKQKKASIVEILKQSN SILPHVVLASTVLALVYPPSFTWFTSRYYAPALGFLMFAVGVNSSEKDFIEAFKRPYA IFAGYVGQFVVKPLLGYIFGMIAVTVFCLPTPLGAGIMLVSCVSGAQLSNYATFLTDP PLAPLSIVMTSLSTATAVFVTPMLSLLLIGKRLPVDVMGMVSSILQIVIAPIAAGLLL NRLFPRLCEAIRPFLPPLSVLDTAFCVGAPLAININSVLSPFGLTVSLLIVAFHLSAF IAGFFLSGFVFHKAPDVKALQRTLSFETGMQSSLLALALANRFFQDPLVGVPPAISTV IMSLMGFSLVMLWAKKKE" CDS complement(join(31344965..31345253,31345332..31345584, 31345687..31345880,31346666..31346766,31346901..31346933)) /locus_tag="TCM_046747" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Sodium Bile acid symporter family isoform 2" /protein_id="EOY24528.1" /db_xref="Phytozome:POPTR_0003s11720.2" /db_xref="TAIR:AT4G22840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49665" /translation="MFLSLSVPFLRLGALDFWCVNVHQRSFQVLLKGIRVRNMDLTQI RYYAPALGFLMFAVGVNSSEKDFIEAFKRPYAIFAGYVGQFVVKPLLGYIFGMIAVTV FCLPTPLGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPMLSL LLIGKRLPVDVMGMVSSILQIVIAPIAAGLLLNRLFPRLCEAIRPFLPPLSVLDTAFC VGAPLAININSVLSPFGLTVSLLIVAFHLSAFIAGFFLSGFVFHKAPDVKALQRTLSF ETGENSFSFPCCC" mobile_element complement(31348050..31348412) /note="source:CACAO_on_E454_scaffold_2 1 401" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 31348265..31348435 /note="source:CACAO_Mariner_E220_scaffold_9 10621 10794" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(31348412..31348618) /note="source:INTACT710_F62_scaffold_3-int 125 330" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 31348718..31350959 /locus_tag="TCM_016109" /note="dbxref CacaoGD:Thecc1EG016109" mRNA join(31348718..31348873,31349374..31349439, 31349597..31349640,31349723..31350115,31350689..31350959) /locus_tag="TCM_016109" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.71 coverage" CDS join(31348818..31348873,31349374..31349439, 31349597..31349640,31349723..31350108) /locus_tag="TCM_016109" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24529.1" /translation="MAVASKLSVQEAQAVGCARPNKVPESIVWPDEGLLEGVFSSHRS DLRRDVVEHRTGCVGHKAHIACARPGRTFLAMRFSAQCPDNGCQVSRAVGMRGMCCTC VWPRMSRPANAQEYHTLPMRHNGACTSPMLEGSAHGLRDIGLSMSVWRASLVSPRTHR AAWRAMHPSQPTPSVPWRAKHPS" gene 31352376..31356464 /locus_tag="TCM_016110" /note="dbxref CacaoGD:Thecc1EG016110" mRNA join(31352376..31352711,31352832..31353167, 31354391..31354627,31354760..31354977,31355365..31356464) /locus_tag="TCM_016110" /product="SNARE associated Golgi family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011059" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005486t1" /inference="similar to AA sequence:ricco:30190.m011059" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1029t5" CDS join(31352871..31353167,31354391..31354627, 31354760..31354977,31355365..31355545) /locus_tag="TCM_016110" /note="dbxref ricco:30190.m011059; paralog of Thecc1EG005486t1" /codon_start=1 /product="SNARE associated Golgi family protein" /protein_id="EOY24530.1" /db_xref="TAIR:AT1G12450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E4MX83" /translation="MTFYDDDKPDKGGEVVPELKLRIGGDDDDGVNSKMVNLRQRLLE ECEAEERNMLLSEPPLPSRWRRSIWYWMKLGILIAFLGLLAAVFLKWVGPFFMDKELM PIINWEMATFSTPMLAVLVFASVALFPTVLLPSTPSMWVAGMTFGYGFGFLLIISAAA VGVSLPYFIGSLFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFKAVTLIRISPFPYII YNYCAVATNVKYGPYILGSLVGMVPEIFVAIYTGILIQTLADASHDRHALSAPQILLN VGGFLVTVVTTIVFTVYAKRQLKIWQKEEELLLQ" gene 31356512..31364326 /locus_tag="TCM_016111" /note="dbxref CacaoGD:Thecc1EG016111" mRNA join(31356512..31356766,31360693..31361982, 31362072..31364051) /locus_tag="TCM_016111" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011060" /inference="similar to AA sequence:Phytozome:POPTR_0001s08260.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc326t3" mobile_element 31357226..31358267 /note="source:scaffold_1_CACTA_0016 1403 2463" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31358794..31358853 /note="source:scaffold_3_CACTA_0393 983 1043" /mobile_element_type="transposon:TIR/CACTA" mRNA join(31359439..31359625,31360339..31360499, 31360693..31361982,31362072..31364313) /locus_tag="TCM_016111" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011060" /inference="similar to AA sequence:Phytozome:POPTR_0001s08260.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc504t1; alternateUTRof:Thecc1EG016111t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc326t3" gene complement(31359439..31360470) /locus_tag="TCM_016112" /note="dbxref CacaoGD:Thecc1EG016112" mRNA complement(join(31359439..31359622,31360336..31360470)) /locus_tag="TCM_016112" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc504t6_C2" CDS complement(join(31359457..31359622,31360336..31360397)) /locus_tag="TCM_016112" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24535.1" /translation="MKMETSENKYGEGAFAGKENSWTVGIFSCLHVPPLKASATLLRS CHVSPWASAKSLLFSLIFNSLTLMGFYSLIN" gene complement(31359538..31363959) /locus_tag="TCM_016113" /note="dbxref CacaoGD:Thecc1EG016113" mRNA complement(join(31359538..31359622,31360336..31363959)) /locus_tag="TCM_016113" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is noncode_complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10209t1" mRNA join(31360474..31360499,31360693..31360777, 31360876..31361982,31362072..31364326) /locus_tag="TCM_016111" /product="Leucine-rich repeat protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011060" /inference="similar to AA sequence:Phytozome:POPTR_0001s08260.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc326t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc326t3" CDS complement(31360477..31360806) /locus_tag="TCM_016113" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24536.1" /translation="MLETQKIESTRLALLNQIQRRSAPLLPIAKLVVCTRKNLEYQRQ NITIMAEQQHFSLSFSHKHSTSSQILHTFAHKKQQSYPLLTHSLLNEPKTRKSEPKIS PFSSFWV" CDS join(31360767..31360777,31360876..31361982, 31362072..31363551) /locus_tag="TCM_016111" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 2" /protein_id="EOY24532.1" /db_xref="Phytozome:POPTR_0001s08260.1" /db_xref="TAIR:AT1G12460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LGE4" /translation="MPNGILTISLAATEKEILLQFKGNITVDPYKSLASWVSSGNPCV DFSGVFCNPEGFVDKIVLWNTSLSGQLPAALSGLSSLRVLTLFGNRFSGNIPQEYSLL QTLWKINVSSNALSGSIPDFIGDLPNIRFLDFSNNGYTGEIPFALFRNCYKTKYVSFS HNSLSGSIPESIVNCSKLEGFDFSFNNLTGELPSRICEISVLRYVSVGSNALSGTVLE EMSKCQSLLYLDLSRNLFTGLAPLGVLEFKNTSYFNVSHNGFFGEIPEIGTCSQSMEF IDASWNSLEGEIPTSISNCKSLKVLDLGFNRLNGTIPVNIGDLGRILAISLANNSLSG TIPTGFGSIELLQVLDLHNLDLSGGIPDEISNCRFLRELDVSGNTLEGQIPDTLYNMS NLEILDLHHNQLNGSIPSSLGNLSKIQFLDLSQNLLSGSIPPSLGNLNMLTHFNLSYN NLSGIIPNVQTIQSFGASAFSNNPGLCGSPLTSCSGSGTPSTSGKTKVLSVSAIVAIV AAAVILTGVCVVTIMNIRARSSKKEEVTVVVESTPPGSSDSNLIIGKLVLFSKSLPSK YEDWEAGTKALLDKECLIGGGSIGTVYRTSFEGGISIAVKKLETLGRIRNQDEFEQEI GRLGNLHHPNLVAFQGYYWSSTMQLILSEFIPSGNLYDNLHGLNYPGTSTGVGNTELN WSRRFHIALGTARALSYLHHDCRPPILHLNIKSTNILLDEKYEAKLSDYGLGKLLPIL DNYGLTKFHNAVGYVAPELAQSLRLSEKCDVYSFGVILLELVTGRKPVESPTLNEVVI LCEYVRGLLERGSASDCFDRRLHGFAENELIQVMKLGLICTSEIPSRRPSMAEVVQVL ESIRTGMES" CDS join(31360805..31361982,31362072..31363551) /locus_tag="TCM_016111" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY24531.1" /db_xref="Phytozome:POPTR_0001s08260.1" /db_xref="TAIR:AT1G12460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LGE4" /translation="MRRIHQFIVSHALLFLILASFGIRILTISLAATEKEILLQFKGN ITVDPYKSLASWVSSGNPCVDFSGVFCNPEGFVDKIVLWNTSLSGQLPAALSGLSSLR VLTLFGNRFSGNIPQEYSLLQTLWKINVSSNALSGSIPDFIGDLPNIRFLDFSNNGYT GEIPFALFRNCYKTKYVSFSHNSLSGSIPESIVNCSKLEGFDFSFNNLTGELPSRICE ISVLRYVSVGSNALSGTVLEEMSKCQSLLYLDLSRNLFTGLAPLGVLEFKNTSYFNVS HNGFFGEIPEIGTCSQSMEFIDASWNSLEGEIPTSISNCKSLKVLDLGFNRLNGTIPV NIGDLGRILAISLANNSLSGTIPTGFGSIELLQVLDLHNLDLSGGIPDEISNCRFLRE LDVSGNTLEGQIPDTLYNMSNLEILDLHHNQLNGSIPSSLGNLSKIQFLDLSQNLLSG SIPPSLGNLNMLTHFNLSYNNLSGIIPNVQTIQSFGASAFSNNPGLCGSPLTSCSGSG TPSTSGKTKVLSVSAIVAIVAAAVILTGVCVVTIMNIRARSSKKEEVTVVVESTPPGS SDSNLIIGKLVLFSKSLPSKYEDWEAGTKALLDKECLIGGGSIGTVYRTSFEGGISIA VKKLETLGRIRNQDEFEQEIGRLGNLHHPNLVAFQGYYWSSTMQLILSEFIPSGNLYD NLHGLNYPGTSTGVGNTELNWSRRFHIALGTARALSYLHHDCRPPILHLNIKSTNILL DEKYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQSLRLSEKCDVYSFGVIL LELVTGRKPVESPTLNEVVILCEYVRGLLERGSASDCFDRRLHGFAENELIQVMKLGL ICTSEIPSRRPSMAEVVQVLESIRTGMES" CDS join(31360805..31361982,31362072..31363551) /locus_tag="TCM_016111" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY24533.1" /db_xref="Phytozome:POPTR_0001s08260.1" /db_xref="TAIR:AT1G12460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LGE4" /translation="MRRIHQFIVSHALLFLILASFGIRILTISLAATEKEILLQFKGN ITVDPYKSLASWVSSGNPCVDFSGVFCNPEGFVDKIVLWNTSLSGQLPAALSGLSSLR VLTLFGNRFSGNIPQEYSLLQTLWKINVSSNALSGSIPDFIGDLPNIRFLDFSNNGYT GEIPFALFRNCYKTKYVSFSHNSLSGSIPESIVNCSKLEGFDFSFNNLTGELPSRICE ISVLRYVSVGSNALSGTVLEEMSKCQSLLYLDLSRNLFTGLAPLGVLEFKNTSYFNVS HNGFFGEIPEIGTCSQSMEFIDASWNSLEGEIPTSISNCKSLKVLDLGFNRLNGTIPV NIGDLGRILAISLANNSLSGTIPTGFGSIELLQVLDLHNLDLSGGIPDEISNCRFLRE LDVSGNTLEGQIPDTLYNMSNLEILDLHHNQLNGSIPSSLGNLSKIQFLDLSQNLLSG SIPPSLGNLNMLTHFNLSYNNLSGIIPNVQTIQSFGASAFSNNPGLCGSPLTSCSGSG TPSTSGKTKVLSVSAIVAIVAAAVILTGVCVVTIMNIRARSSKKEEVTVVVESTPPGS SDSNLIIGKLVLFSKSLPSKYEDWEAGTKALLDKECLIGGGSIGTVYRTSFEGGISIA VKKLETLGRIRNQDEFEQEIGRLGNLHHPNLVAFQGYYWSSTMQLILSEFIPSGNLYD NLHGLNYPGTSTGVGNTELNWSRRFHIALGTARALSYLHHDCRPPILHLNIKSTNILL DEKYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQSLRLSEKCDVYSFGVIL LELVTGRKPVESPTLNEVVILCEYVRGLLERGSASDCFDRRLHGFAENELIQVMKLGL ICTSEIPSRRPSMAEVVQVLESIRTGMES" mRNA join(31361166..31361191,31361353..31361982, 31362072..31364326) /locus_tag="TCM_016111" /product="Leucine-rich repeat protein kinase family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30190.m011060" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045491t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08260.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc523t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc326t3" CDS join(31361522..31361982,31362072..31363551) /locus_tag="TCM_016111" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG045491t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 4" /protein_id="EOY24534.1" /db_xref="Phytozome:POPTR_0001s08260.1" /db_xref="TAIR:AT1G12460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LGE4" /translation="MSKCQSLLYLDLSRNLFTGLAPLGVLEFKNTSYFNVSHNGFFGE IPEIGTCSQSMEFIDASWNSLEGEIPTSISNCKSLKVLDLGFNRLNGTIPVNIGDLGR ILAISLANNSLSGTIPTGFGSIELLQVLDLHNLDLSGGIPDEISNCRFLRELDVSGNT LEGQIPDTLYNMSNLEILDLHHNQLNGSIPSSLGNLSKIQFLDLSQNLLSGSIPPSLG NLNMLTHFNLSYNNLSGIIPNVQTIQSFGASAFSNNPGLCGSPLTSCSGSGTPSTSGK TKVLSVSAIVAIVAAAVILTGVCVVTIMNIRARSSKKEEVTVVVESTPPGSSDSNLII GKLVLFSKSLPSKYEDWEAGTKALLDKECLIGGGSIGTVYRTSFEGGISIAVKKLETL GRIRNQDEFEQEIGRLGNLHHPNLVAFQGYYWSSTMQLILSEFIPSGNLYDNLHGLNY PGTSTGVGNTELNWSRRFHIALGTARALSYLHHDCRPPILHLNIKSTNILLDEKYEAK LSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQSLRLSEKCDVYSFGVILLELVTGR KPVESPTLNEVVILCEYVRGLLERGSASDCFDRRLHGFAENELIQVMKLGLICTSEIP SRRPSMAEVVQVLESIRTGMES" gene complement(31364261..31368171) /locus_tag="TCM_016114" /note="dbxref CacaoGD:Thecc1EG016114" mRNA complement(join(31364261..31365606,31365694..31365854, 31367198..31367329,31367420..31368171)) /locus_tag="TCM_016114" /product="ACC synthase 10 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011061" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015005t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11760.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10200t2" mRNA complement(join(31364428..31365605,31367216..31367329, 31367420..31367857)) /locus_tag="TCM_016114" /product="ACC synthase 10 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011061" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015005t1" /inference="similar to AA sequence:ricco:30190.m011061" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc189t7_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10200t2" CDS complement(join(31364751..31365606,31365694..31365854, 31367198..31367329,31367420..31367905)) /locus_tag="TCM_016114" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015005t1" /codon_start=1 /product="ACC synthase 10 isoform 1" /protein_id="EOY24537.1" /db_xref="Phytozome:POPTR_0003s11760.1" /db_xref="TAIR:AT1G62960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQ10" /translation="MTQTRFSRTRTPEPEKEQARGGGGAAMRVIVPLQGVVQGRGGLI LGSIIPCALFYFLQFYLKRHRNDQDDQNESNSPGQNQGTRSPSSGQLTELPGLTRNLS RALLSPRSPSGPVSVSGRVSGIVKAADSPYYAGLRRVKEDQYDELGNPNGVIQLGLAE NKLSLDLVKNWLAENAREAILGNGKELSISGIATYQPFDGLMEFKVAVAGFMAQVMEK AVSFNPSQIVLTAGATPAIEILSFCLADAGNAFLVPTPYYPGFDRDVKWRTGVEIIHV PCRSADNFNLSITALDIAFNQAKKRGLKVRGIIISNPSNPVGNLLSRETLYNLLDFAR EKNIHIVSNEILAGCTHGNEEFVSMAEIVDLEDVDRKRVHLVYGLSKDLSLPGFRVGV IYSFNEEVLAAAKKLTRFSSISAPTQRLLISMLSDTKFVQTFITINRERLHRMYVQFV EGLKKLGIECIKSSGGFYCWADMSGLISSYSEKGELELWDKLLNIAKVNVTPGSCCHC IEPGWFRFCFATLTEKDIPVVMERIQKVSETCKLNR" CDS complement(join(31364751..31365605,31367216..31367329, 31367420..31367827)) /locus_tag="TCM_016114" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011061; paralog of Thecc1EG015005t1" /codon_start=1 /product="ACC synthase 10 isoform 2" /protein_id="EOY24538.1" /db_xref="TAIR:AT1G62960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQ10" /translation="MRVIVPLQGVVQGRGGLILGSIIPCALFYFLQFYLKRHRNDQDD QNESNSPGQNQGTRSPSSGQLTELPGLTRNLSRALLSPRSPSGPVSVSGRVSGIVKAA DSPYYAGLRRVKEDQYDELGNPNGVIQLGLAENKLSLDLVKNWLAENAREAILGNGKE LSISGIATYQPFDGFDRDVKWRTGVEIIHVPCRSADNFNLSITALDIAFNQAKKRGLK VRGIIISNPSNPVGNLLSRETLYNLLDFAREKNIHIVSNEILAGCTHGNEEFVSMAEI VDLEDVDRKRVHLVYGLSKDLSLPGFRVGVIYSFNEEVLAAAKKLTRFSSISAPTQRL LISMLSDTKFVQTFITINRERLHRMYVQFVEGLKKLGIECIKSSGGFYCWADMSGLIS SYSEKGELELWDKLLNIAKVNVTPGSCCHCIEPGWFRFCFATLTEKDIPVVMERIQKV SETCKLNR" mobile_element complement(31366038..31366164) /note="source:scaffold_10_CACTA_0137 6927 7057" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31366067..31366166 /note="source:CACAO_M_S_E16386_F9_scaffold_2 2044 2142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31371202..31374276) /note="source:scaffold_9_CACTA_0932 66 2662" /mobile_element_type="transposon:TIR/CACTA" gene 31375843..31381564 /locus_tag="TCM_016115" /note="dbxref CacaoGD:Thecc1EG016115" mRNA join(31375843..31376595,31376923..31377081, 31377414..31377500,31377769..31377919,31378440..31378548, 31378999..31379049,31379147..31379244,31379336..31379411, 31379502..31379564,31379707..31379790,31379906..31379964, 31380157..31380235,31380324..31380389,31380477..31380539, 31380706..31380783,31380876..31380920,31381083..31381186, 31381284..31381564) /locus_tag="TCM_016115" /product="Cell cycle regulated microtubule associated protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11770.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11770.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10215t5" mobile_element 31376352..31376396 /note="source:scaffold_9_CACTA_0943 9090 9134" /mobile_element_type="transposon:TIR/CACTA" mRNA join(31376371..31376595,31376923..31377081, 31377414..31377500,31377769..31377919,31378440..31378548, 31378999..31379049,31379147..31379244,31379336..31379411, 31379502..31379564,31379707..31379790,31379906..31379964, 31380157..31380235,31380324..31380389,31380477..31380539, 31380706..31380779,31380873..31381106) /locus_tag="TCM_016115" /product="Cell cycle regulated microtubule associated protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11770.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11770.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc479t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10215t5" CDS join(31376412..31376595,31376923..31377081, 31377414..31377500,31377769..31377919,31378440..31378548, 31378999..31379049,31379147..31379244,31379336..31379411, 31379502..31379564,31379707..31379790,31379906..31379964, 31380157..31380235,31380324..31380389,31380477..31380539, 31380706..31380783,31380876..31380920,31381083..31381186, 31381284..31381302) /locus_tag="TCM_016115" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cell cycle regulated microtubule associated protein, putative isoform 1" /protein_id="EOY24539.1" /db_xref="Phytozome:POPTR_0003s11770.1" /db_xref="TAIR:AT4G22860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TWC4" /translation="MEEEMEMDTEMEIEPVFEVREVDLEYEFDAARFFDFTREESPAE AREAELWLESAPSYPPSPFVAKLVLREESLLENVNTSPKCKEVEDTSTLLENDSGNVM ALEFSAMGPNNRGIEGTNRGIFTDIQKVLQKALNQPFQLTAGFTTYNYTSSDKLKDKS KSVKSVIPRSSTLMKPTACQLAKQNRPPQVAASRFQKQQLLNSDRSLGNSSVVESQAA KRQKLEGGLSRKVADVKQQTNLIHKAPKKEGTVDRNSIHTRLKLTIPKEPELETAHRA QRIRPKNGTEQEHVTSVTHRFKARPLNRKILEAPSLPLPKKSIPKLPQFQEFRLKTSE RAVQLSSAVPSSFQSNDADKGSEKPGTIFATGNGTREPRRASAMVATGQDVCDIKYNF KARPLNKKIFSHKGDIGVFRNIKRETTVPMEFNFHAEKRVQQTPPVELFSKLSLTSEL QPSNGSQIKLPRPTFTSTKGSKENRWTSFQPEHEMRNLTKEKPHVFGGKNIQCGNDGC ITEVGNQLSTRSLGIR" CDS join(31376412..31376595,31376923..31377081, 31377414..31377500,31377769..31377919,31378440..31378548, 31378999..31379049,31379147..31379244,31379336..31379411, 31379502..31379564,31379707..31379790,31379906..31379964, 31380157..31380235,31380324..31380389,31380477..31380539, 31380706..31380779,31380873..31380924) /locus_tag="TCM_016115" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cell cycle regulated microtubule associated protein, putative isoform 2" /protein_id="EOY24540.1" /db_xref="Phytozome:POPTR_0003s11770.1" /db_xref="TAIR:AT4G22860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TWC4" /translation="MEEEMEMDTEMEIEPVFEVREVDLEYEFDAARFFDFTREESPAE AREAELWLESAPSYPPSPFVAKLVLREESLLENVNTSPKCKEVEDTSTLLENDSGNVM ALEFSAMGPNNRGIEGTNRGIFTDIQKVLQKALNQPFQLTAGFTTYNYTSSDKLKDKS KSVKSVIPRSSTLMKPTACQLAKQNRPPQVAASRFQKQQLLNSDRSLGNSSVVESQAA KRQKLEGGLSRKVADVKQQTNLIHKAPKKEGTVDRNSIHTRLKLTIPKEPELETAHRA QRIRPKNGTEQEHVTSVTHRFKARPLNRKILEAPSLPLPKKSIPKLPQFQEFRLKTSE RAVQLSSAVPSSFQSNDADKGSEKPGTIFATGNGTREPRRASAMVATGQDVCDIKYNF KARPLNKKIFSHKGDIGVFRNIKRETTVPMEFNFHAEKRVQQTPPVELFSKLSLTSEL QPSNGSQIKLPRPTFTSTRAQKKIDGLLSNQNMR" gene complement(31380193..31384393) /locus_tag="TCM_016116" /note="dbxref CacaoGD:Thecc1EG016116" mRNA complement(join(31380193..31380222,31381453..31382315, 31382413..31383218,31383336..31383900)) /locus_tag="TCM_016116" /product="C4-dicarboxylate transporter/malic acid transport protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011063" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015293t1" /inference="similar to AA sequence:ricco:30190.m011063" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc201t1; alternateUTRof:Thecc1EG016116t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc192t6" mRNA complement(join(31380755..31380786,31380879..31380920, 31381083..31382315,31382413..31383218,31383336..31383900)) /locus_tag="TCM_016116" /product="C4-dicarboxylate transporter/malic acid transport protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011063" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015293t1" /inference="similar to AA sequence:ricco:30190.m011063" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc201t7; alternateUTRof:Thecc1EG016116t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc192t6" mRNA complement(join(31380891..31381187,31381285..31382315, 31382413..31383218,31383336..31383900)) /locus_tag="TCM_016116" /product="C4-dicarboxylate transporter/malic acid transport protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011063" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015293t1" /inference="similar to AA sequence:ricco:30190.m011063" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc192t10; alternateUTRof:Thecc1EG016116t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc192t6" mRNA complement(join(31381694..31382315,31382413..31383218, 31383336..31384393)) /locus_tag="TCM_016116" /product="C4-dicarboxylate transporter/malic acid transport protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011063" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015293t1" /inference="similar to AA sequence:ricco:30190.m011063" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc192t6" CDS complement(join(31381901..31382315,31382413..31383218, 31383336..31383851)) /locus_tag="TCM_016116" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011063; paralog of Thecc1EG015293t1" /codon_start=1 /product="C4-dicarboxylate transporter/malic acid transport protein isoform 1" /protein_id="EOY24541.1" /db_xref="TAIR:AT1G12480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5FYR7" /translation="MDKGATSSKSFQTHFVDIHEVLPEEEEEDEGVSKMEDRVVKKGL HKPVKLRELKRPQRSFSRQVSLETGFSVLDREAKAKDERKVLQRSGRSFGGFDSATRV GGEARKGDFDIFRTKSTLSKQNSLLPARKERETESQRTEGANGLDESVNNSVPAGRYF AALRGPELDQVKDYEDILLPKDEIWPFLLRFPIGCFGICLGLSSQAVLWRALSTSPAT KFLHVTPFINLFLWILALAVLVSVSITYLLKCIYYFEAVKREYFHPVRVNFFFAPWVV CMFLAIGVPPMLAPAKLHPAIWCAFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHL SVVGNFVGAILASKVGWTEAAKFLWSVGFAHYLVVFVTLYQRLPTSEALPKELHPVYS MFIAAPSAASIAWGSIYGEFDGCSRTCFFIALFLYVSLVVRINFFTGFRFSVAWWSYT FPMTTASVATIKYAEQVPSFLSKGLALSLSFMSSAMVSVLLVSTLLHAFVWQTLFPND LAIAITKIRHVKGKKPFKKAYDIKRWTKQALTKNNSVDKEYNGENERAYELQSGHMQR VDAIWTHAESRS" CDS complement(join(31381901..31382315,31382413..31383218, 31383336..31383851)) /locus_tag="TCM_016116" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011063; paralog of Thecc1EG015293t1" /codon_start=1 /product="C4-dicarboxylate transporter/malic acid transport protein isoform 1" /protein_id="EOY24542.1" /db_xref="TAIR:AT1G12480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5FYR7" /translation="MDKGATSSKSFQTHFVDIHEVLPEEEEEDEGVSKMEDRVVKKGL HKPVKLRELKRPQRSFSRQVSLETGFSVLDREAKAKDERKVLQRSGRSFGGFDSATRV GGEARKGDFDIFRTKSTLSKQNSLLPARKERETESQRTEGANGLDESVNNSVPAGRYF AALRGPELDQVKDYEDILLPKDEIWPFLLRFPIGCFGICLGLSSQAVLWRALSTSPAT KFLHVTPFINLFLWILALAVLVSVSITYLLKCIYYFEAVKREYFHPVRVNFFFAPWVV CMFLAIGVPPMLAPAKLHPAIWCAFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHL SVVGNFVGAILASKVGWTEAAKFLWSVGFAHYLVVFVTLYQRLPTSEALPKELHPVYS MFIAAPSAASIAWGSIYGEFDGCSRTCFFIALFLYVSLVVRINFFTGFRFSVAWWSYT FPMTTASVATIKYAEQVPSFLSKGLALSLSFMSSAMVSVLLVSTLLHAFVWQTLFPND LAIAITKIRHVKGKKPFKKAYDIKRWTKQALTKNNSVDKEYNGENERAYELQSGHMQR VDAIWTHAESRS" CDS complement(join(31381901..31382315,31382413..31383218, 31383336..31383851)) /locus_tag="TCM_016116" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m011063; paralog of Thecc1EG015293t1" /codon_start=1 /product="C4-dicarboxylate transporter/malic acid transport protein isoform 1" /protein_id="EOY24543.1" /db_xref="TAIR:AT1G12480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5FYR7" /translation="MDKGATSSKSFQTHFVDIHEVLPEEEEEDEGVSKMEDRVVKKGL HKPVKLRELKRPQRSFSRQVSLETGFSVLDREAKAKDERKVLQRSGRSFGGFDSATRV GGEARKGDFDIFRTKSTLSKQNSLLPARKERETESQRTEGANGLDESVNNSVPAGRYF AALRGPELDQVKDYEDILLPKDEIWPFLLRFPIGCFGICLGLSSQAVLWRALSTSPAT KFLHVTPFINLFLWILALAVLVSVSITYLLKCIYYFEAVKREYFHPVRVNFFFAPWVV CMFLAIGVPPMLAPAKLHPAIWCAFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHL SVVGNFVGAILASKVGWTEAAKFLWSVGFAHYLVVFVTLYQRLPTSEALPKELHPVYS MFIAAPSAASIAWGSIYGEFDGCSRTCFFIALFLYVSLVVRINFFTGFRFSVAWWSYT FPMTTASVATIKYAEQVPSFLSKGLALSLSFMSSAMVSVLLVSTLLHAFVWQTLFPND LAIAITKIRHVKGKKPFKKAYDIKRWTKQALTKNNSVDKEYNGENERAYELQSGHMQR VDAIWTHAESRS" CDS complement(join(31381901..31382315,31382413..31383218, 31383336..31383851)) /locus_tag="TCM_016116" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30190.m011063; paralog of Thecc1EG015293t1" /codon_start=1 /product="C4-dicarboxylate transporter/malic acid transport protein isoform 1" /protein_id="EOY24544.1" /db_xref="TAIR:AT1G12480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5FYR7" /translation="MDKGATSSKSFQTHFVDIHEVLPEEEEEDEGVSKMEDRVVKKGL HKPVKLRELKRPQRSFSRQVSLETGFSVLDREAKAKDERKVLQRSGRSFGGFDSATRV GGEARKGDFDIFRTKSTLSKQNSLLPARKERETESQRTEGANGLDESVNNSVPAGRYF AALRGPELDQVKDYEDILLPKDEIWPFLLRFPIGCFGICLGLSSQAVLWRALSTSPAT KFLHVTPFINLFLWILALAVLVSVSITYLLKCIYYFEAVKREYFHPVRVNFFFAPWVV CMFLAIGVPPMLAPAKLHPAIWCAFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHL SVVGNFVGAILASKVGWTEAAKFLWSVGFAHYLVVFVTLYQRLPTSEALPKELHPVYS MFIAAPSAASIAWGSIYGEFDGCSRTCFFIALFLYVSLVVRINFFTGFRFSVAWWSYT FPMTTASVATIKYAEQVPSFLSKGLALSLSFMSSAMVSVLLVSTLLHAFVWQTLFPND LAIAITKIRHVKGKKPFKKAYDIKRWTKQALTKNNSVDKEYNGENERAYELQSGHMQR VDAIWTHAESRS" mobile_element 31384463..31384662 /note="source:CACAO_PIF_E62_scaffold_2 7074 7271" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(31384485..31385598) /note="source:scaffold_10_CACTA_0130 8380 9606" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31385615..31385956) /note="source:scaffold_10_CACTA_0130 6240 6574" /mobile_element_type="transposon:TIR/CACTA" gene 31386676..31388814 /locus_tag="TCM_016117" /note="dbxref CacaoGD:Thecc1EG016117" mRNA join(31386676..31386923,31387030..31387352, 31388417..31388814) /locus_tag="TCM_016117" /product="Uclacyanin 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11780.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03110.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS join(31386758..31386923,31387030..31387352, 31388417..31388608) /locus_tag="TCM_016117" /codon_start=1 /product="Uclacyanin 1, putative" /protein_id="EOY24545.1" /db_xref="Phytozome:POPTR_0013s03110.1" /db_xref="TAIR:AT2G32300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I837" /translation="MAFSKIFFIIAVVAFSVIHSSLATEFLVGDESGWTLDFDYQGWA AGKEFRVGDKLVFKYASGVHNVLRVNGTEFQQCEAAGNTVPLTTGNDVITLATPGRKW YICGVARHCAARNMKLNITVLAQGDSPASAPTLSSPTSAARGNAASSFYGGIVVMVGF VGMSHGDGLELFRTVSHMLCSLEKEPTMFYGVGATDSFTVRVAHAVTKASPTASSDAN MITLTTPE" gene complement(31388604..31389858) /locus_tag="TCM_016118" /note="dbxref CacaoGD:Thecc1EG016118" mRNA complement(join(31388604..31389576,31389662..31389858)) /locus_tag="TCM_016118" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.56 coverage" CDS complement(join(31389359..31389576,31389662..31389785)) /locus_tag="TCM_016118" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24546.1" /translation="MNQVRVHLLQLENDKIALKGNVFPVLFNAEASIQLPWCSLLRKD DIGLLITFGGCWNIILGVASFKFIVLVERQDLENKSSTAVVYATYGLSRSSWVSVEAL DKAIPTTQGSA" gene complement(31390065..31392452) /locus_tag="TCM_016119" /note="dbxref CacaoGD:Thecc1EG016119" mRNA complement(join(31390065..31390366,31391258..31392452)) /locus_tag="TCM_016119" /product="Nucleotide-sugar transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042615t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11790.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc724t5" CDS complement(31391309..31392379) /locus_tag="TCM_016119" /note="paralog of Thecc1EG042615t1" /codon_start=1 /product="Nucleotide-sugar transporter family protein" /protein_id="EOY24547.1" /db_xref="Phytozome:POPTR_0003s11790.1" /db_xref="TAIR:AT1G12500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDH3" /translation="MVEAQTWTTRRMSNPRLDSTATADHQVLDIPATPTGDDRNSFYS VGSHLSPNLLTALIIASWFMSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCACYSYV AINFLEIVPRQHILSRKQFFKIFALSCIFCFSVVCGNTSLRYIPVSFNQAIGATTPFF TAIFAFLITCKKESAEVYFALLPVVFGIVLASNSEPLFNLFGFLVCIGSTAGRALKSV VQGILLTSEAEKLHSMNLLLYMAPMAAMILLPFTLYIEGNVARVTLEKARSDSFIIFL LLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAFVSVMIFRNPVTVMGMTGF AVTVMGVVLYSEAKKRSKVTTH" mobile_element 31394044..31394737 /note="source:CACAO_hAT_E2547_scaffold_5 1 722" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31394445..31394817) /note="source:CACAO_on_E195_scaffold_9 76 573" /mobile_element_type="transposon:TIR/hAT" gene complement(31395388..31398438) /locus_tag="TCM_016120" /note="dbxref CacaoGD:Thecc1EG016120" mRNA complement(join(31395388..31395797,31395964..31396293, 31396417..31396725,31396822..31396941,31398316..31398438)) /locus_tag="TCM_016120" /product="Growth-regulating factor 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08310.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019913001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9984t1" CDS complement(join(31395727..31395797,31395964..31396293, 31396417..31396725,31396822..31396941,31398316..31398349)) /locus_tag="TCM_016120" /codon_start=1 /product="Growth-regulating factor 2" /protein_id="EOY24548.1" /db_xref="Phytozome:GSVIVT01019913001" /db_xref="TAIR:AT4G37740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUK8" /translation="MRKKSPINLLQGHTASVLFGSLNLFFSLIYAHTQEMEPQDSPLK IARFADFGIGLTNLGDSWNMESNRLSGGEGSPPIGLGLELGCGSGHRPTGFTKSCGFT VFQLQELQLQSLIYKYMEAGLPVPHHLLLPIWKSFAGSVGGLHGNPYQLYSGFLGCGP LHLEYKNGLDPEPGRCRRTDGKKWRCSKEAVPDHKYCERHMHRGRQRSRKLVEASQAT TSSTGISRTNADTNLSISLQVDSSSSSGSHLSSSFIGFSPKSVLRGETLMVFVGLPGE KDEQHGLHHLI" gene 31398278..31400024 /locus_tag="TCM_016121" /note="dbxref CacaoGD:Thecc1EG016121" mRNA join(31398278..31398325,31398976..31399439, 31399716..31400024) /locus_tag="TCM_016121" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4170t2" CDS 31399009..31399269 /locus_tag="TCM_016121" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24549.1" /translation="MFSVTTTGPIHLLPLFEVEGFGIDFAFSRENEQIGRDWNYGICL KMGHLITSESLSCFVDLAIGMHSYPLLEKSQQVLPFGNHIAS" mobile_element 31400923..31401256 /note="source:CACAO_PIF_E144_scaffold_10 1668 1994" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 31401199..31401503 /note="source:CACAO_on_SS_E135_scaffold_10 5411 5709" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(31401520..31401654) /note="source:CACAO_Helitron_E81_scaffold_3 2772 2906" /mobile_element_type="transposon:Helitron" mobile_element complement(31401624..31401953) /note="source:CACAO_Helitron_E81_scaffold_3 2567 2899" /mobile_element_type="transposon:Helitron" gene 31401925..31404059 /locus_tag="TCM_016122" /note="dbxref CacaoGD:Thecc1EG016122" mRNA join(31401925..31402989,31403066..31404059) /locus_tag="TCM_016122" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027551001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020487t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08320.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06147t00001" CDS join(31402093..31402989,31403066..31403671) /locus_tag="TCM_016122" /note="paralog of Thecc1EG020487t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY24550.1" /db_xref="Phytozome:POPTR_0001s08320.1" /db_xref="TAIR:AT2G45550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6PLI5" /translation="MDFWTSSFLCLLSTWVLVQAFHSIRRGSKASLSKLPPGPRRIPI FGNLFDLGDKPHKSLSELAKIHGPLMSLKIGSLITVVISSENMAKQVLQKHDLTFSNR TIVDAVRASQHDEVGLPWIPVSPLWRTLRKVCNTHLFASQKLDANQYLRRKKIQELIA IVQKSCHAGEVINIGQAAFNTTINLLSNTIFSMDLVDPNSPTAQEFKKTVWGIMEEAG KPNLADYFPILRKIDPQGVRRRMTIHFEKLLDLFGKMFDERLQSRKAQGSTASNDVLD TVLDIIEGNIEELNKTHVTHLLLVLFVAGADTTSSTLEWAMAELLRNPQVLVKAKKEL EQVIGKGNPVEESDINRLPYLQAIIKETFRMHATVPLLLPRKAGADAEICGFTVPKGA QVLVNVWAIGRDPSIWEKPSAFMPERFMGSDIDVKGRDFGLIPFGAGRRICPGLPLAN RMLHLMLGSLIHSFDWKLEGGISPEDMNMEEKFGLTLQLAEPLRAIPTPV" gene complement(31404389..31406945) /locus_tag="TCM_016123" /note="dbxref CacaoGD:Thecc1EG016123" mRNA complement(join(31404389..31405397,31405517..31405689, 31406903..31406945)) /locus_tag="TCM_016123" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" mobile_element complement(31404928..31404979) /note="source:CACAO_M_S_E6117_F51_scaffold_2 1135 1188" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(31405244..31405397,31405517..31405653)) /locus_tag="TCM_016123" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24551.1" /translation="MLRGAVLVTSVSVAPYRMKMRSTLPSSLSLLELLMLFMLNLSQL KRPLIMKFFKIFNATGSWDDNHISHSANDKADHLTKEGVSRSQPKLWIYVND" gene 31407040..31409432 /locus_tag="TCM_016124" /note="dbxref CacaoGD:Thecc1EG016124" mRNA join(31407040..31408272,31408363..31409432) /locus_tag="TCM_016124" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027551001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016122t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08320.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5307t1" CDS join(31407226..31408272,31408363..31408968) /locus_tag="TCM_016124" /note="paralog of Thecc1EG016122t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY24552.1" /db_xref="Phytozome:POPTR_0001s08320.1" /db_xref="TAIR:AT2G45550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6PLI5" /translation="MLNLGCLVFQAAWQEPALLSLDEHTRYSRVDAELNIVIKRKDYN GIRTSKMDLLSWLSCLLFFLVLVQAFHSITRITRKGRADKLPPGPATIPVFGNLFQLG EKPHTSLATLAKTHGDIMTLKLDLTTTIVFSSATMAKEILQKHDAAFSKRTVPDAFRA LQHDEFGMPWMPVSTTWRNLRKISNLHIFASQKLDANQYLRRSKVEELVADVHDSCRV GKAIDIGQAAFKTTLNFLSNTFFPIDLADSSDTAQEFRDIVQGIKEELGKLNFGDYFP IILRNLDLQGMRRRMTVHFGKLMNLFDRVIDKRLQLRKTNDYISTNDFLDTLLNISED KNEELDRNLIKHLLLDLFTAGTETTSSTFEWVMAELLHTPKVLQEAQRELKQIIGAGN SVEESGIACLPYLQAIVKETLRLHPPVPLLLPQKTEVDYEIHNFILPKGAQLLVNTWA VSRDPNFWEEPDLFLPERFIGSEMDVRGRDFGLIPFGGGRRICPGLPLALKMLHLMLG RLLHSFDWELEDGVTPESLNMEDKYGLVLHKAQPLKAIAISL" gene 31412234..31414787 /locus_tag="TCM_047022" /note="dbxref CacaoGD:Thecc1EG047022" mRNA join(31412234..31412504,31412610..31412715, 31413019..31413096,31413286..31413378,31413524..31413616, 31414157..31414255,31414511..31414787) /locus_tag="TCM_047022" /product="Nudix hydrolase" /inference="similar to AA sequence:ricco:30190.m011070" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02892t00001" CDS join(31412266..31412504,31412610..31412715, 31413019..31413096,31413286..31413378,31413524..31413616, 31414157..31414255,31414511..31414744) /locus_tag="TCM_047022" /note="dbxref ricco:30190.m011070" /codon_start=1 /product="Nudix hydrolase" /protein_id="EOY24553.1" /db_xref="TAIR:AT4G11980.1" /translation="MAHLPQSLLPMSALTLPKRLVVSYSLTFLLDRCTRSKRPFCSRM SATSSTPLTHSISLQSQLGQPVQIVAAPGLSDSGFRSAIESSLFKQWLKNLESESGIL ANGDMTLTQVLIQGVDMFGKRIGFLKFKADIIDKGTGKKVPGIVFARGPAVAVLILLE SDGETYAVLTKQARVPTGRLVLELPAGMLDDDKGDFVGTAVREVEEEIGIQLNLEDMV DLTAFLEPSTGLKVFPSPGGCDEEIGLFLYRGRVDKNIITQLQGKETGLLEHGELIKV CVIPYEKLWRMTPDAKTLMAIAIYEMAKKEGLLPHKS" mobile_element complement(31413615..31413664) /note="source:scaffold_5_CACTA_0596 1798 1847" /mobile_element_type="transposon:TIR/CACTA" gene complement(31415613..31418772) /locus_tag="TCM_016126" /note="dbxref CacaoGD:Thecc1EG016126" mRNA complement(join(31415613..31416125,31416896..31417119, 31417736..31417870,31418005..31418077,31418234..31418257, 31418369..31418772)) /locus_tag="TCM_016126" /product="Copper chaperone for SOD1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11830.1" /inference="similar to AA sequence:frave:gene32338" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10001t2" CDS complement(join(31415862..31416125,31416896..31417119, 31417736..31417870,31418005..31418077,31418234..31418257, 31418369..31418602)) /locus_tag="TCM_016126" /note="dbxref frave:gene32338" /codon_start=1 /product="Copper chaperone for SOD1" /protein_id="EOY24554.1" /db_xref="TAIR:AT1G12520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD47" /translation="MAFLRSLTTATAIAAASALPTAFAFSSSSSFKSSNFSNTQSLSF LSSPTNRLGLTRTFASSPTALHMDSPTSDYNPSQDGSLPDLLTEYVVDMKCEGCANAV KNKLQTVNGVKSVEVDLSNQVVRILGSSTVKTMTEALEQTGRKARLIGQGVLEDFLVS AAVAEFKGPEIFGVVRLAQVSMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGK VFNPSNEGTDKEPLGDLGTLDVDKNGEAFYTGVKQQLRVADLIGRSIAVYETEDKSDQ GRTAAVIARSAGVGENYKKICACDGTTIWEASDKDFVTSKV" gene 31420273..31421445 /locus_tag="TCM_016127" /note="dbxref CacaoGD:Thecc1EG016127" mRNA 31420273..31421445 /locus_tag="TCM_016127" /product="Eukaryotic translation initiation factor 3G1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042695t1" /inference="similar to AA sequence:Phytozome:Glyma18g18050.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.89 coverage" CDS 31420784..31421005 /locus_tag="TCM_016127" /note="paralog of Thecc1EG042695t1" /codon_start=1 /product="Eukaryotic translation initiation factor 3G1" /protein_id="EOY24555.1" /db_xref="Phytozome:Glyma18g18050.1" /db_xref="TAIR:AT3G11400.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J6A1" /translation="MTNLSEDTREPDLLELFYTFGPVTRVYVAMDNKTGTIRGFGFVN FVNTEDAQRAIDKLNGYGYDNLISKYFFS" gene 31421523..31428659 /locus_tag="TCM_016128" /note="dbxref CacaoGD:Thecc1EG016128" mRNA join(31421523..31422326,31422444..31422537, 31422842..31423047,31423291..31423800,31425486..31428659) /locus_tag="TCM_016128" /product="Subtilase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g032460.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11860.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10226t1" CDS join(31422047..31422326,31422444..31422537, 31422842..31423047,31423291..31423800,31425486..31427659) /locus_tag="TCM_016128" /codon_start=1 /product="Subtilase family protein" /protein_id="EOY24556.1" /db_xref="Phytozome:POPTR_0003s11860.1" /db_xref="TAIR:AT5G67360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW36" /translation="MGFWKQSNFRKGVIIGVQDTGITPSHPSFSDEGMPPPEKWKGRC ELVECNNKLIGARNFRNDEQGQAPLDQDGHSTHTASTTAGNFVQGASVFEDGVDVISI SIGGASTPFYEDVIAVGAFGAILICKGQEVKDAGGAAMILMNDDLNKFSTLADPHVLP ATHVSYTAGMNILNYINSTAKPTATILFEGTFSAPAMKSAIITTADRVTLDGLPILDE TWSPSNVFAIGAGHVNPSKANDPGLVYDMQPDDYIPYLCSLGYTDDQVRVIVQQSVRC SNDTNIAEAELNYPSFSIVLGSTNRTYTWTVTNVGPANSSHTINIAAPPGVDISVTTN IIEFTEVKQNATFSVTFRLSWKTSALFVQVAQEVEDLPKSKEHEKSSLSTYIVHLKKP EGVFTQVVDLDGWYQSFLSFTSSQHRRIVYSYRNVITGFAAKLTAEEAEAMKRKEGII SARPEKVYSLHTTHSPNFLGLHQNSGVWNQSNYGKGVIIGLLDTGITPGHPSFSDEGM PPPPAKWKGKCEFATGCNNKLIGARNFAEDVAGPATDEEGHGTHTASTAGGNYVKGAN VFGNANGTAVGMAPLAHLAMYKVCGEGCSESAILAAMDAAVEDGVDVLSLSLGGGSVP FFEDSIAVGAFTAIQKGIFVSCSAGNEGPLYGTLSNEAPWIFTVGASTIDRGIAATAK LGNGLTIDGESLFQPKDFPSTLLPLVYAGANGKASSAFCAPRSLRDVDVKGKVVLCER GGDIGRIDKGQEVKDNGGAAMILMNDKLNGFSTIADPHVLPATHVSFLAGLKIQDYIN STSEPTATILFKGTVIGNPSAPEVTSFSSRGPNRQSFGILKPDIIGPGVSILAAWPVS VENKTNTKSTFNMISGTSMSCPHLSGIAALLKSSHPDWSPAAIKSAIITTATLVNLGG KPIVDQTKAPADIFATGAGHVNPSKANDPGLIYDIQPDDYIAYLCGLNYTDEEVGTIV QRTVECSSESIIAEAELNYPSFSIILPESGSQTYTRTVTNVGPASSSYTYEVVAPTGV DISVQPDHIAFTAVNQKATYSVTFSRQKDVSLQFSQGLLTWISAQHNVTTPIVAIFA" gene 31428746..31431000 /locus_tag="TCM_016129" /note="dbxref CacaoGD:Thecc1EG016129" mRNA join(31428746..31429347,31429458..31429940, 31430021..31431000) /locus_tag="TCM_016129" /product="Subtilase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011086" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016128t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11870.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc913t1" CDS join(31429023..31429347,31429458..31429940, 31430021..31430691) /locus_tag="TCM_016129" /note="paralog of Thecc1EG016128t1" /codon_start=1 /product="Subtilase family protein, putative" /protein_id="EOY24557.1" /db_xref="Phytozome:POPTR_0003s11870.1" /db_xref="TAIR:AT1G04110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW36" /translation="MRPHMFYSYKNVISGFAARLTEEEVQAMRMKKGFISARPQRMLR TQTTHTPNFLGLQQELGIWKQSNFGKGVIIGVLDTGVLPSHPSFSDEGMPPPPPKWKA RCDFTASITAAGQFVNYADVLGNAKGTAVGMATLAHLAIYKVCFGEDCGDSNILAALD AAIEDDVDVLSLSLGVDAVPFFQDNIAIGAFAAMKNGTFVGCPAGNSGPSNTTLSNEA PWLLTVGVSTIDRKIVATAKLGNGEEFDGESVFQPNDFSSMLLPLVYAGMNGGGIARI AKGQEVKNTGGAAMILINEQADGFSTSADVHVLPATNVNYAAGLKIKAYINSTASPKA TILFRGTIIGEPSSPSAASFSSRGPSLASPGILKPDIIGPGVNILVAWPFSLSNNTNS TSTFNLISGTSMSWPHLSGIAALLKSSHPAWSPAATKSAMMTSTNLFNIGGKPTVDDT LQPADVFAIGAGHINPSRADNPGLIYDIQPDDLMTIFHISVV" gene complement(31431759..31434068) /locus_tag="TCM_016130" /note="dbxref CacaoGD:Thecc1EG016130" mRNA complement(join(31431759..31432539,31432886..31433001, 31433836..31434068)) /locus_tag="TCM_016130" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11880.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11880.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10363t00001" CDS complement(join(31432032..31432539,31432886..31433001, 31433836..31433946)) /locus_tag="TCM_016130" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24558.1" /db_xref="Phytozome:POPTR_0003s11880.1" /db_xref="TAIR:AT1G12530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW38" /translation="MGEENKKINKEEVIAKLKDDGDFDKLRLKIIRKLKDNDELRNNI IAAVKQSAALNRPGAENMKPRQLSDAIHEEVGNKVMGQISDSLWEVIRSEGGMRTEIT ETVQSVYNKLVNPRGKEEGESSIHDKMPVKKEAENNGFIKGSAGRVDDTLSDGDPKEP PGFSLSNIHHSNHHQQQNEAEQQLPRPYENGPIENWKEEPGHPQNGQEQDDVDVGVPP GFSEDIDQKQSCDVSDEDPDVPPGFG" gene complement(31434495..31439651) /locus_tag="TCM_016131" /note="dbxref CacaoGD:Thecc1EG016131" mRNA complement(join(31434495..31435029,31435107..31435165, 31435753..31435809,31436278..31436324,31436418..31436641, 31436726..31436802,31436906..31437157,31437237..31437430, 31438378..31438603,31438793..31438829,31439349..31439651)) /locus_tag="TCM_016131" /product="YTH family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011088" /inference="similar to AA sequence:Phytozome:POPTR_0001s08370.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10263t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10263t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g9993t2" mRNA complement(join(31434495..31435029,31435107..31435165, 31435753..31435811,31436139..31436196,31436278..31436324, 31436418..31436641,31436726..31436802,31436906..31437157, 31437237..31437430,31438378..31438603,31438793..31438829, 31439349..31439651)) /locus_tag="TCM_016131" /product="YTH family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011088" /inference="similar to AA sequence:Phytozome:POPTR_0001s08370.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10263t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10263t3" CDS complement(join(31434969..31435029,31435107..31435165, 31435753..31435809,31436278..31436324,31436418..31436641, 31436726..31436802,31436906..31437157,31437237..31437430, 31438378..31438468)) /locus_tag="TCM_016131" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="YTH family protein, putative isoform 2" /protein_id="EOY24560.1" /db_xref="Phytozome:POPTR_0001s08370.1" /db_xref="TAIR:AT4G11970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUJ7" /translation="MSSDTARENASVVDSSATEWKNDVGNSDDPENEDGYPFRAQEPQ HSHMVDKRGRLYNTRYFIIKSLNHQNIQLSIDKGIWATQLMNEPILEEAFHNSGIVIL VFSVNMSGFFQGYAQMMSSVGWRRDNVWSKGSGKGNPWGRSFKVKWLCLNHLPFQKTL HLKNPLNDYKPVKISRDCQELPQDIGEALCELLDGSNDVDGSLKRDELPSKRPCIEPP YSLGDEDYNVPPLHMSWAGTPMPYHPFPYRHQADLSRFHLTHPHTLATEYFPTTTGAS KVAKSPHASTLTEDDFLEMTYEEYLEAHGRTSKQLCRSVTAPSWTMQESTSRKHADDS SSSLVTDRHHSRKRTHNSS" CDS complement(join(31434969..31435029,31435107..31435165, 31435753..31435811,31436139..31436196,31436278..31436324, 31436418..31436641,31436726..31436802,31436906..31437157, 31437237..31437430,31438378..31438468)) /locus_tag="TCM_016131" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="YTH family protein, putative isoform 1" /protein_id="EOY24559.1" /db_xref="Phytozome:POPTR_0001s08370.1" /db_xref="TAIR:AT4G11970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUJ7" /translation="MSSDTARENASVVDSSATEWKNDVGNSDDPENEDGYPFRAQEPQ HSHMVDKRGRLYNTRYFIIKSLNHQNIQLSIDKGIWATQLMNEPILEEAFHNSGIVIL VFSVNMSGFFQGYAQMMSSVGWRRDNVWSKGSGKGNPWGRSFKVKWLCLNHLPFQKTL HLKNPLNDYKPVKISRDCQELPQDIGEALCELLDGSNDVDGSLKRDELPSKRPCIEPP YSLGDEDYNVPPLHMSWAGTPMPYHPFPYRHQADLSRFHLTHPHTLATEYFPTTTGAS KVAKSPHASTLTEDDFLEMRILSLWSYKCDSSEKLDLSETYEEYLEAHGRTSKQLCRS VTAPSWTMQESTSRKHADDSSSSLVTDRHHSRKRTHNSS" mRNA complement(join(31436112..31436324,31436418..31436641, 31436726..31436802,31436906..31437157,31437237..31437430, 31438378..31438603,31438793..31438829,31439349..31439651)) /locus_tag="TCM_016131" /product="YTH family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30190.m011088" /inference="similar to AA sequence:ricco:30190.m011088" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b015589t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10263t3" CDS complement(join(31436260..31436324,31436418..31436641, 31436726..31436802,31436906..31437157,31437237..31437430, 31438378..31438468)) /locus_tag="TCM_016131" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m011088" /codon_start=1 /product="YTH family protein, putative isoform 3" /protein_id="EOY24561.1" /db_xref="TAIR:AT4G11970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUJ7" /translation="MSSDTARENASVVDSSATEWKNDVGNSDDPENEDGYPFRAQEPQ HSHMVDKRGRLYNTRYFIIKSLNHQNIQLSIDKGIWATQLMNEPILEEAFHNSGIVIL VFSVNMSGFFQGYAQMMSSVGWRRDNVWSKGSGKGNPWGRSFKVKWLCLNHLPFQKTL HLKNPLNDYKPVKISRDCQELPQDIGEALCELLDGSNDVDGSLKRDELPSKRPCIEPP YSLGDEDYNVPPLHMSWAGTPMPYHPFPYRHQADLSRFHLTHPHTLATEYFPTTTGAS KVAKSPHASTLTEDDFLEMVWNPI" mobile_element 31440886..31441285 /note="source:CACAO_on_E500_scaffold_3 1 400" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 31442090..31443435 /locus_tag="TCM_016133" /note="dbxref CacaoGD:Thecc1EG016133" mRNA join(31442090..31442594,31442719..31443057, 31443169..31443435) /locus_tag="TCM_016133" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014147" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016134t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08380.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(31442271..31442594,31442719..31443057, 31443169..31443270) /locus_tag="TCM_016133" /note="paralog of Thecc1EG016134t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /protein_id="EOY24562.1" /db_xref="Phytozome:POPTR_0001s08380.1" /db_xref="TAIR:AT1G12540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKR8" /translation="MDYVNSMFRSDQMADKFQFFPIPCRHTIQQDELILIPSEEANDL SNWGDYSQRRRKPARAFLVNDVDGKSIDNKKKKIIHRDIERQRRQEMATLYRALRLQL PLEYLKGKRSISDHMHEAVNYIKHLQKKILKLSGRRDELKSSSNSYASRSVPESLQDS SEHSVMVRPCLAGVEVVISTCLRQGLNLSSVLEVILAEGLSVVTCISTKVNESLMHTI VSEVNDGRNIEPSELQQKLTMLATSSSELHLGMLAK" gene 31445406..31446646 /locus_tag="TCM_016134" /note="dbxref CacaoGD:Thecc1EG016134" mRNA join(31445406..31445933,31446074..31446412, 31446530..31446646) /locus_tag="TCM_016134" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016133t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08380.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4519t4" CDS join(31445571..31445933,31446074..31446412, 31446530..31446607) /locus_tag="TCM_016134" /note="paralog of Thecc1EG016133t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /protein_id="EOY24563.1" /db_xref="Phytozome:POPTR_0001s08380.1" /db_xref="TAIR:AT5G51790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKR8" /translation="MDRSQSKRYRGDLGLRNMDCAASEFPSEESTVELFQFFSIPCQQ DSSNPKQDEQNLILVSKKSDCSRGKRKAATAFGVEDGNAPDSKGKKIIHRDIERQRRQ EMTTLYSTLRLLLPLEYLKGKRSISDHMHEAVKYIKHLQNRITELSDKREELKRSSNL HTPSSMPESSPDCSEDSVVVRGCMVGVEIAINTGLRPGLPLSNVLDVIVAEGLSVVNC ISTKVNERLLHTIVLEVNDGRSIELSELQQKLTKLIIRPPG" mobile_element 31447523..31448150 /note="source:INTACT639F_F363_scaffold_5-int 7466 8092" /mobile_element_type="retrotransposon:LTR/Copia" assembly_gap 31448151..31458150 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 31458155..31458678 /note="source:CACAO_M_E4753_F17_scaffold_2 7306 7823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31458678..31459086 /note="source:INTACT639F_F363_scaffold_5-int 8120 8580" /mobile_element_type="retrotransposon:LTR/Copia" gene 31459085..31462596 /locus_tag="TCM_016135" /note="dbxref CacaoGD:Thecc1EG016135" mRNA join(31459085..31459219,31460814..31461447, 31461837..31462596) /locus_tag="TCM_016135" /product="D-isomer specific 2-hydroxyacid dehydrogenase family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G12550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016136t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11890.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02585t00002" CDS join(31460956..31461447,31461837..31462361) /locus_tag="TCM_016135" /note="paralog of Thecc1EG016136t1" /codon_start=1 /product="D-isomer specific 2-hydroxyacid dehydrogenase family protein, putative" /protein_id="EOY24564.1" /db_xref="Phytozome:POPTR_0003s11890.1" /db_xref="TAIR:AT2G45630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKR7" /translation="MGYHQKPQYLSKTVEQDLLLPRVLVLRSPPVPSFFFSKSHLQAH FHLVDQLDSPEPTHSFLSRHAASVLALLCVASTRVSSETLSLLPSLKLVVASSAGLDH IDLGECRRRGITVTSAGQVFTEDVADFAVGLLIDVLRRVSASDGCVRARLWAEKRPFP LGVKLGGNRVGIVGLGRIGSEVAKRLIDFGCSIAYCSRKEKPSVPYPYYSTVSELATN SDVLILCCSLTKETHHIINKGVMEALGKEGVIINIGRGALIDEKELVKFLEQGQIRGA GLDVYENEPHVSQELFAMENVVLAPHAAVYTLESFAALQELVVGNLKAFFSNKPLLTP AQLE" mobile_element 31463074..31463527 /note="source:CACAO_on_S_E390_scaffold_9 2393 2850" /mobile_element_type="transposon:TIR/Mutator" gene 31464599..31468372 /locus_tag="TCM_016136" /note="dbxref CacaoGD:Thecc1EG016136" mRNA join(31464599..31465249,31467508..31468372) /locus_tag="TCM_016136" /product="D-isomer specific 2-hydroxyacid dehydrogenase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11890.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005464t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11890.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05110t00001" CDS join(31464761..31465249,31467508..31468032) /locus_tag="TCM_016136" /note="paralog of Thecc1EG005464t1" /codon_start=1 /product="D-isomer specific 2-hydroxyacid dehydrogenase family protein, putative" /protein_id="EOY24565.1" /db_xref="Phytozome:POPTR_0003s11890.1" /db_xref="TAIR:AT1G12550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKR7" /translation="MATKETDNQQQRSSQELPVVLVNRLPSFRLPSKPPFEDDLLSHF HLLDPHDSPEPYDYFLSRHASSIRALITVGPTPVTAEFLNLLPCLGLVVGTSAGLDHI DLPACRSRGIAVTNASAAFSEDVADCAVGLLIDVLRRISSADRFVRGRMWPAKKEYPL GFKLRGKRVGIVGLGSIGSEVAKRLSAFDCSIAYSSRKKKPSVPFPFYANVGDLASNS DVLILCCALTEETTHIVNKDVMIALGKQGVIINVGRGYLIDEKDLVQCLVRGEIGGAG LDVFENEPNVPKELLGLDNVVLSPHRAVMTPESFEALLQLTVANLKAFFSNKPLLSVV SNE" mobile_element 31465709..31465767 /note="source:CACAO_Again_on_S_E308_scaffold_10 462 520" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31465958..31466030) /note="source:scaffold_2_CACTA_0239 8829 8900" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31466184..31466514 /note="source:CACAO_on_SS_E42_scaffold_2 24197 24545" /mobile_element_type="transposon:TIR/Mutator" gene 31468896..31471863 /locus_tag="TCM_016137" /note="dbxref CacaoGD:Thecc1EG016137" mRNA join(31468896..31468936,31469207..31469701, 31470553..31471863) /locus_tag="TCM_016137" /product="D-isomer specific 2-hydroxyacid dehydrogenase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011089.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016136t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11890.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc417t2" CDS join(31468928..31468936,31469207..31469701, 31470553..31471077) /locus_tag="TCM_016137" /note="paralog of Thecc1EG016136t1" /codon_start=1 /product="D-isomer specific 2-hydroxyacid dehydrogenase family protein, putative" /protein_id="EOY24566.1" /db_xref="Phytozome:POPTR_0003s11890.1" /db_xref="TAIR:AT1G12550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKR7" /translation="MIKASASGPKAPNGHSKEQELPLVLVRRPPNFHFPFKHRLETHF HLLDPLDSVPPESTHSFISRHSPSVRALLCVDPTPISRDLSSLLHSLQFIVCSTARVD HVDLQEYRCRSIAVSNVGKAFSSDVADLAVGLLIDVLRKSPPETGTFGLDCGLGMGNS RLDSRLFLLGGKRVGIVGLGGIGAEIVKKLESFGCAISYNSRRKRPSVPFRWYKNVYD LAINSDILIVCCALTEETHYIINKDVMTALGKEGVIINVGRGALIDEEELLQLLVRGE LVGAGLAVFENEPDVPGELFSLNNLVLFPHCAVATPEYFDALEELIPTNLKAFFKSKP LQSLVEFE" gene 31471912..31473077 /locus_tag="TCM_016138" /note="dbxref CacaoGD:Thecc1EG016138" mRNA 31471912..31473077 /locus_tag="TCM_016138" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1657t10" mobile_element complement(31471983..31472063) /note="source:scaffold_3_CACTA_0377 2111 2191" /mobile_element_type="transposon:TIR/CACTA" CDS 31472126..31472335 /locus_tag="TCM_016138" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24567.1" /translation="MFYQGTQHHFHSWVVIMQNLLKLLMIENPIAVVRHQWSCSSNLK LPTISPQIQECIRDFFHREKQKLEK" gene complement(31472928..31476408) /locus_tag="TCM_016139" /note="dbxref CacaoGD:Thecc1EG016139" mRNA complement(join(31472928..31473826,31474180..31474921)) /locus_tag="TCM_016139" /product="Leucoanthocyanidin dioxygenase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025133t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11900.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00798t00002; inference alignment:Newbler:10:TSA:cgbaL_g06940t00001" mRNA complement(join(31473075..31473826,31474180..31474659, 31474777..31474831,31474987..31475181,31476328..31476408)) /locus_tag="TCM_016139" /product="Leucoanthocyanidin dioxygenase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025133t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11900.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06940t00001" CDS complement(join(31473265..31473826,31474180..31474659, 31474777..31474831,31474987..31475029)) /locus_tag="TCM_016139" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025133t1" /codon_start=1 /product="Leucoanthocyanidin dioxygenase isoform 1" /protein_id="EOY24568.1" /db_xref="Phytozome:POPTR_0003s11900.1" /db_xref="TAIR:AT4G22880.2" /translation="MTTALTQTLVELITYHYKKATKDQHYGIFLRVRVESLASSGIQS IPKEYIRPQEELTSIGNVFEEEKKEEGPQVPTIDLKEIDSEDREVRERCRQELKKAAT EWGVMHLVNHGISDELMERVKKAGQKFFELSVEEKEKYANDQALGKIQGYGSKLANNA SGQLEWEDYFFHLVYPEDKRDLSIWPQTPSDYTEVTSEYARQLRVLASKILSALSLCL GLEEGRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGL QLFYEGKWITAKCVPNSIIMHIGDTVEILSNGKYKSILHRGLVNKEKVRISWAVFCEP PKEKIILKPLPETVSETEPPLFPPRTFAQHIHHKLFRKTQDGLSN" CDS complement(join(31473265..31473826,31474180..31474682)) /locus_tag="TCM_016139" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025133t1" /codon_start=1 /product="Leucoanthocyanidin dioxygenase isoform 2" /protein_id="EOY24569.1" /db_xref="Phytozome:POPTR_0003s11900.1" /db_xref="TAIR:AT4G22880.2" /translation="MVTSMAPRVESLASSGIQSIPKEYIRPQEELTSIGNVFEEEKKE EGPQVPTIDLKEIDSEDREVRERCRQELKKAATEWGVMHLVNHGISDELMERVKKAGQ KFFELSVEEKEKYANDQALGKIQGYGSKLANNASGQLEWEDYFFHLVYPEDKRDLSIW PQTPSDYTEVTSEYARQLRVLASKILSALSLCLGLEEGRLEKEVGGLEELLLQMKINY YPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWITAKCVPNSIIMHIGDT VEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKIILKPLPETVSETEPPLFPPR TFAQHIHHKLFRKTQDGLSN" mobile_element complement(31476687..31476768) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3864 3919" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31476848..31477698) /locus_tag="TCM_016140" /note="dbxref CacaoGD:Thecc1EG016140" mRNA complement(31476848..31477698) /locus_tag="TCM_016140" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage" CDS complement(31477208..31477516) /locus_tag="TCM_016140" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24570.1" /translation="MTFKRGEFVGTMKLNAFPNNTVLSLQFPKDYRSNYETLTKTFHN KKKKEKETNCYEKPIYDVININFILYISLLSWYLNSTDIIPSTYLGWNSWGPQNYRIE " gene 31478148..31482233 /locus_tag="TCM_016141" /note="dbxref CacaoGD:Thecc1EG016141" mRNA join(31478148..31478573,31478969..31479084, 31479278..31479374,31479479..31479579,31480159..31480215, 31480444..31480520,31480710..31480761,31481114..31481224, 31481319..31481416,31481523..31481598,31481822..31482001, 31482073..31482233) /locus_tag="TCM_016141" /product="Pgr5-like a, a isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11910.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11910.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6405t5; alternateUTRof:Thecc1EG016141t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5002t9" mRNA join(31478148..31478573,31478969..31479084, 31479278..31479374,31479479..31479579,31480159..31480215, 31480444..31480520,31480710..31480761,31481114..31481224, 31481319..31481416,31481523..31481598,31481848..31482001, 31482073..31482233) /locus_tag="TCM_016141" /product="Pgr5-like a, a isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11910.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11910.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6405t3; alternateUTRof:Thecc1EG016141t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5002t9" mRNA join(31478148..31478573,31478969..31479084, 31479278..31479374,31479479..31479579,31480159..31480215, 31480444..31480520,31480710..31480761,31481114..31481224, 31481319..31481416,31481523..31481598,31481860..31481968, 31482073..31482167) /locus_tag="TCM_016141" /product="Pgr5-like a, a isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11910.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11910.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5002t2; alternateUTRof:Thecc1EG016141t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5002t9" mRNA join(31478148..31478573,31478969..31479084, 31479278..31479374,31479479..31479579,31480159..31480215, 31480444..31480520,31480710..31480761,31481114..31481224, 31481319..31481416,31481523..31481598,31481860..31481945, 31482073..31482167) /locus_tag="TCM_016141" /product="Pgr5-like a, a isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11910.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11910.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5002t3; alternateUTRof:Thecc1EG016141t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5002t9" mRNA join(31478193..31478573,31478969..31479084, 31479278..31479374,31479479..31479579,31480159..31480215, 31480444..31480520,31480710..31480761,31481114..31481224, 31481319..31481416,31481523..31481598,31481860..31482001, 31482073..31482147) /locus_tag="TCM_016141" /product="Pgr5-like a, a isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11910.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11910.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5002t9" mRNA join(31478193..31478573,31478969..31479084, 31479278..31479374,31479479..31479579,31480159..31480215, 31480444..31480520,31480710..31480761,31481114..31481224, 31481319..31481416,31481523..31481782) /locus_tag="TCM_016141" /product="Pgr5-like a, a isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11910.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11910.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b015597t1a3; alternateUTRof:Thecc1EG016141t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc5002t9" CDS join(31478396..31478573,31478969..31479084, 31479278..31479374,31479479..31479579,31480159..31480215, 31480444..31480520,31480710..31480761,31481114..31481224, 31481319..31481416,31481523..31481592) /locus_tag="TCM_016141" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pgr5-like a, a isoform 1" /protein_id="EOY24571.1" /db_xref="Phytozome:POPTR_0003s11910.1" /db_xref="TAIR:AT4G22890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H112" /translation="MAGKLTFSLTPPRLFTAPFQKPLVPFSSSSSTRVQSNGKQLCVR RRLFLLPTKATADQQGQLGEDEVVDSKILPYCSIDKKEKKSLGEMEQEFLQALQAFYY EGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPILSDEEFDKLK QRLKMEGSEIVVEGPRCSLRTRKVYSDLSVDYLKMFLLNVPATVVALGLFFFLDDLTG FEITYILELPEPFSFIFTWFAAVPALVWLAQALTKVVVKDSLILKGPCPNCGTENVSF FGTILSVSSGGTTNNLKCSNCGTPLVYDSNTRLITLPEGSEA" CDS join(31478396..31478573,31478969..31479084, 31479278..31479374,31479479..31479579,31480159..31480215, 31480444..31480520,31480710..31480761,31481114..31481224, 31481319..31481416,31481523..31481592) /locus_tag="TCM_016141" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pgr5-like a, a isoform 1" /protein_id="EOY24572.1" /db_xref="Phytozome:POPTR_0003s11910.1" /db_xref="TAIR:AT4G22890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H112" /translation="MAGKLTFSLTPPRLFTAPFQKPLVPFSSSSSTRVQSNGKQLCVR RRLFLLPTKATADQQGQLGEDEVVDSKILPYCSIDKKEKKSLGEMEQEFLQALQAFYY EGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPILSDEEFDKLK QRLKMEGSEIVVEGPRCSLRTRKVYSDLSVDYLKMFLLNVPATVVALGLFFFLDDLTG FEITYILELPEPFSFIFTWFAAVPALVWLAQALTKVVVKDSLILKGPCPNCGTENVSF FGTILSVSSGGTTNNLKCSNCGTPLVYDSNTRLITLPEGSEA" CDS join(31478396..31478573,31478969..31479084, 31479278..31479374,31479479..31479579,31480159..31480215, 31480444..31480520,31480710..31480761,31481114..31481224, 31481319..31481416,31481523..31481592) /locus_tag="TCM_016141" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pgr5-like a, a isoform 1" /protein_id="EOY24573.1" /db_xref="Phytozome:POPTR_0003s11910.1" /db_xref="TAIR:AT4G22890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H112" /translation="MAGKLTFSLTPPRLFTAPFQKPLVPFSSSSSTRVQSNGKQLCVR RRLFLLPTKATADQQGQLGEDEVVDSKILPYCSIDKKEKKSLGEMEQEFLQALQAFYY EGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPILSDEEFDKLK QRLKMEGSEIVVEGPRCSLRTRKVYSDLSVDYLKMFLLNVPATVVALGLFFFLDDLTG FEITYILELPEPFSFIFTWFAAVPALVWLAQALTKVVVKDSLILKGPCPNCGTENVSF FGTILSVSSGGTTNNLKCSNCGTPLVYDSNTRLITLPEGSEA" CDS join(31478396..31478573,31478969..31479084, 31479278..31479374,31479479..31479579,31480159..31480215, 31480444..31480520,31480710..31480761,31481114..31481224, 31481319..31481416,31481523..31481592) /locus_tag="TCM_016141" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Pgr5-like a, a isoform 1" /protein_id="EOY24574.1" /db_xref="Phytozome:POPTR_0003s11910.1" /db_xref="TAIR:AT4G22890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H112" /translation="MAGKLTFSLTPPRLFTAPFQKPLVPFSSSSSTRVQSNGKQLCVR RRLFLLPTKATADQQGQLGEDEVVDSKILPYCSIDKKEKKSLGEMEQEFLQALQAFYY EGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPILSDEEFDKLK QRLKMEGSEIVVEGPRCSLRTRKVYSDLSVDYLKMFLLNVPATVVALGLFFFLDDLTG FEITYILELPEPFSFIFTWFAAVPALVWLAQALTKVVVKDSLILKGPCPNCGTENVSF FGTILSVSSGGTTNNLKCSNCGTPLVYDSNTRLITLPEGSEA" CDS join(31478396..31478573,31478969..31479084, 31479278..31479374,31479479..31479579,31480159..31480215, 31480444..31480520,31480710..31480761,31481114..31481224, 31481319..31481416,31481523..31481592) /locus_tag="TCM_016141" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Pgr5-like a, a isoform 1" /protein_id="EOY24575.1" /db_xref="Phytozome:POPTR_0003s11910.1" /db_xref="TAIR:AT4G22890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H112" /translation="MAGKLTFSLTPPRLFTAPFQKPLVPFSSSSSTRVQSNGKQLCVR RRLFLLPTKATADQQGQLGEDEVVDSKILPYCSIDKKEKKSLGEMEQEFLQALQAFYY EGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPILSDEEFDKLK QRLKMEGSEIVVEGPRCSLRTRKVYSDLSVDYLKMFLLNVPATVVALGLFFFLDDLTG FEITYILELPEPFSFIFTWFAAVPALVWLAQALTKVVVKDSLILKGPCPNCGTENVSF FGTILSVSSGGTTNNLKCSNCGTPLVYDSNTRLITLPEGSEA" CDS join(31478396..31478573,31478969..31479084, 31479278..31479374,31479479..31479579,31480159..31480215, 31480444..31480520,31480710..31480761,31481114..31481224, 31481319..31481416,31481523..31481592) /locus_tag="TCM_016141" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Pgr5-like a, a isoform 1" /protein_id="EOY24576.1" /db_xref="Phytozome:POPTR_0003s11910.1" /db_xref="TAIR:AT4G22890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H112" /translation="MAGKLTFSLTPPRLFTAPFQKPLVPFSSSSSTRVQSNGKQLCVR RRLFLLPTKATADQQGQLGEDEVVDSKILPYCSIDKKEKKSLGEMEQEFLQALQAFYY EGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPILSDEEFDKLK QRLKMEGSEIVVEGPRCSLRTRKVYSDLSVDYLKMFLLNVPATVVALGLFFFLDDLTG FEITYILELPEPFSFIFTWFAAVPALVWLAQALTKVVVKDSLILKGPCPNCGTENVSF FGTILSVSSGGTTNNLKCSNCGTPLVYDSNTRLITLPEGSEA" gene 31483883..31486191 /locus_tag="TCM_016142" /note="dbxref CacaoGD:Thecc1EG016142" mRNA join(31483883..31484121,31484832..31485147, 31485363..31486191) /locus_tag="TCM_016142" /product="Alpha-expansin 7, putative" /inference="alignment:exonerate-protein:2:frave:gene12398" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042703t1" /inference="similar to AA sequence:ricco:30190.m011094" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1972t1" CDS join(31483947..31484121,31484832..31485147, 31485363..31485717) /locus_tag="TCM_016142" /note="dbxref ricco:30190.m011094; paralog of Thecc1EG042703t1" /codon_start=1 /product="Alpha-expansin 7, putative" /protein_id="EOY24577.1" /db_xref="TAIR:AT1G12560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RBZ3" /translation="MASSSSYSWSWCFRFFSLTLTTLAIISKPSVAAPIFRPSPWALA HATFYGDETASETMGGACGYGNLFSNGYGTDTAALSTTLFNNGFACGTCYQIKCVQSS WCYSGVPFTTVTATNLCPPNWAQDSNNGGWCNPPRAHFDMSKPAFMKIAQWKAGIVPV MYRRICPPKWSMYSNPCRVPCVRPGGLRFSFQGNGYWLLVYVMNVGGGGDIQNMWVKG SRTGWISMSHNWGASYQAFATLGGQSLSFKLTSYTTKETIIAWNVAPANWNVGLTYST NLNFH" gene 31487269..31488832 /locus_tag="TCM_016143" /note="dbxref CacaoGD:Thecc1EG016143" mRNA join(31487269..31488361,31488549..31488832) /locus_tag="TCM_016143" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011095" /inference="similar to AA sequence:ricco:30190.m011095" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc973t1" CDS 31487435..31488358 /locus_tag="TCM_016143" /note="dbxref ricco:30190.m011095" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24578.1" /db_xref="TAIR:AT4G22900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW43" /translation="MGSLFSLTLIILSWASLLLMKAEAEGIRSARLLDLLIRDYTVKS FDRHLRTGIVHTVHLPANFSGIKVDIARFRCGSLHRYGAQVKEFHLGSGTTVQPCAER VMVVRQNLGHNWSSIYYANYDLSGYQLVSPVLGLLAYNAGSDVSFGSPFQLGILAREK PIKIDFSNFTKASNMTGIRLLCASFEGDGKVTMKNQVSPNVCFATRHGHFGLVIESPP SLPVRKKISRWKVVVGSSIGAALGAFLLGLLFVAMFVKVKKKARMEELERRAYEEEAL QVSMVGHIRAPTASITRTTPTIEHEYIPYPS" gene 31491113..31496095 /locus_tag="TCM_016144" /note="dbxref CacaoGD:Thecc1EG016144" mRNA join(31491113..31491735,31491833..31492060, 31493446..31493625,31493914..31493976,31494077..31494271, 31494653..31494754,31494843..31494905,31495065..31495133, 31495339..31496095) /locus_tag="TCM_016144" /product="FIZZY-related 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019887001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042707t1" /inference="similar to AA sequence:ricco:30190.m011096" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11187t00001" mRNA join(31491114..31491735,31491833..31492060, 31493446..31493625,31493914..31493976,31494077..31494288, 31494755..31494905,31495065..31495133,31495339..31495909) /locus_tag="TCM_016144" /product="Fizzy-related 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019887001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042707t1" /inference="similar to AA sequence:ricco:30190.m011096" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1136t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1136t4; inference alignment:Newbler:10:TSA:cgbaL_g11187t00001" CDS join(31491235..31491735,31491833..31492060, 31493446..31493625,31493914..31493976,31494077..31494271, 31494653..31494754,31494843..31494905,31495065..31495133, 31495339..31495392) /locus_tag="TCM_016144" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011096; paralog of Thecc1EG042707t1" /codon_start=1 /product="FIZZY-related 2 isoform 1" /protein_id="EOY24579.1" /db_xref="TAIR:AT4G22910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L3Z8" /translation="MDDPPISNQRSQSASSSTPRLNLPLRMSDSSLHLENLPSRIMHI NRMINSNYNRSPSRTIYSDRFIPSRSGSNFALFDISNSPTSAEGKEDGSGTYNSLLRA ALFGPETPDKKDSSGLPACRNIFRYKTETKRSLHSLSPFGLEESIPGISHSPVKAPRK VPRSPYKVLDAPALQDDFYLNLVDWSSNNVLAVGLGNCVYLWNACSSKVTKLCDLGID DSVCSVGWAQRGTHLAVGTSNGKVQIWDASRCRTVRTMEGHRLRVGALAWSSSLLSSG SRDKSILQRDIRAQDDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLFVWNQHSTQ PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCN LVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGA GDETLRFWNVFPSPKSQNTDSEIGASSFGRTTIR" CDS join(31491235..31491735,31491833..31492060, 31493446..31493625,31493914..31493976,31494077..31494288, 31494755..31494782) /locus_tag="TCM_016144" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011096; paralog of Thecc1EG042707t1" /codon_start=1 /product="Fizzy-related 2 isoform 2" /protein_id="EOY24580.1" /db_xref="TAIR:AT4G22910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L3Z8" /translation="MDDPPISNQRSQSASSSTPRLNLPLRMSDSSLHLENLPSRIMHI NRMINSNYNRSPSRTIYSDRFIPSRSGSNFALFDISNSPTSAEGKEDGSGTYNSLLRA ALFGPETPDKKDSSGLPACRNIFRYKTETKRSLHSLSPFGLEESIPGISHSPVKAPRK VPRSPYKVLDAPALQDDFYLNLVDWSSNNVLAVGLGNCVYLWNACSSKVTKLCDLGID DSVCSVGWAQRGTHLAVGTSNGKVQIWDASRCRTVRTMEGHRLRVGALAWSSSLLSSG SRDKSILQRDIRAQDDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLFVWNQHSTQ PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVIF PFWYTKFKNSV" gene complement(31496254..31498369) /locus_tag="TCM_016145" /note="dbxref CacaoGD:Thecc1EG016145" mRNA complement(join(31496254..31496967,31497070..31497237, 31497654..>31497710)) /locus_tag="TCM_016145" /product="Non-yellowing 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011097" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035279t1" /inference="similar to AA sequence:ricco:30190.m011097" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06415t00001; inference alignment:Newbler:10:TSA:cgbaB_g09612t00001" mRNA complement(join(31496539..31496967,31497070..31497237, 31497654..31497827,31497925..31498369)) /locus_tag="TCM_016145" /product="Non-yellowing 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011097" /inference="similar to AA sequence:ricco:30190.m011097" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09612t00001; inference alignment:Newbler:10:TSA:cgbaB_g09612t00001" CDS complement(join(31496611..31496967,31497070..31497237, 31497654..31497827,31497925..31498050)) /locus_tag="TCM_016145" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011097" /codon_start=1 /product="Non-yellowing 1 isoform 1" /protein_id="EOY24581.1" /db_xref="TAIR:AT4G22920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H593" /translation="MGTLTFAPVLPTTKPRPSVFEQNRSFFVSKRRSKKKNQAIVPVA RLFGPAIFEASKLKVLFLGVDDGKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQ GWSNKLYRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDLCARLRYFIFCKELPVVLKA FVHGDGNLLKNYPELQEALVWVYFHSNIPEFNRVECWGPLVGAGGPWSGDDGTEQVRK QEISLCNWVLPEPCQENCSCCFPPLSSIPWSQKFPRENEQHGTQQGMPLTNLNTIE" CDS complement(join(31496611..31496967,31497070..31497237, 31497654..>31497710)) /locus_tag="TCM_016145" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011097; paralog of Thecc1EG035279t1" /codon_start=1 /product="Non-yellowing 1 isoform 2" /protein_id="EOY24582.1" /db_xref="TAIR:AT4G22920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H593" /translation="SDITSKLTLAISQTINNSQLQGWSNKLYRDEVVAEWKKVKGKMS LHVHCHISGGHFLLDLCARLRYFIFCKELPVVLKAFVHGDGNLLKNYPELQEALVWVY FHSNIPEFNRVECWGPLVGAGGPWSGDDGTEQVRKQEISLCNWVLPEPCQENCSCCFP PLSSIPWSQKFPRENEQHGTQQGMPLTNLNTIE" mobile_element 31498753..31498975 /note="source:scaffold_2_CACTA_0248 14097 14327" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31498900..31499054) /note="source:scaffold_5_CACTA_0584 2699 2825" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31499704..31500454 /note="source:CACAO_MITE58_scaffold_3 1 751" /mobile_element_type="transposon:TIR/MITE" mobile_element 31500537..31500706 /note="source:scaffold_1_CACTA_0016 1100 1277" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31502326..31502806 /note="source:CACAO_M_S_E1490_F231_scaffold_1 2185 2664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31502807..31503018) /note="source:CACAO_M_S_E99244_F4_scaffold_9 4493 4694" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31503019..31503081) /note="source:scaffold_5_CACTA_0596 1749 2022" /mobile_element_type="transposon:TIR/CACTA" gene complement(31506777..31514358) /locus_tag="TCM_016147" /note="dbxref CacaoGD:Thecc1EG016147" mRNA complement(join(31506777..31507338,31507464..31507505, 31507622..31507663,31507761..31507860,31507976..31508037, 31508599..31508683,31513523..31513721,31514214..31514358)) /locus_tag="TCM_016147" /product="AGAMOUS-like 14" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s11960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005456t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11960.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00413t00002" CDS complement(join(31507204..31507338,31507464..31507505, 31507622..31507663,31507761..31507860,31507976..31508037, 31508599..31508683,31513523..31513704)) /locus_tag="TCM_016147" /note="paralog of Thecc1EG005456t1" /codon_start=1 /product="AGAMOUS-like 14" /protein_id="EOY24583.1" /db_xref="Phytozome:POPTR_0003s11960.1" /db_xref="TAIR:AT4G22950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKR0" /translation="MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIIFSPRGKLYEFSSSSMNKTIERYQKREKDYGICSKAALEENMPNVKEDAHSMAKKI ELLEDSKRKLLGNGLEPCSFNDLQLLESQLERSLSRIRARKNQLFWEQIEKLKGEERR LGEENAKLREQCGMQPRQSPTSQTDELHHVQSMEVETELFIGPPERRSAKNPSVN" gene 31519494..31528658 /locus_tag="TCM_016149" /note="dbxref CacaoGD:Thecc1EG016149" mRNA join(31519494..31520071,31520549..31520667, 31520753..31520859,31520950..31521037,31522600..31523674, 31523956..31524010,31524128..31524209,31524390..31524470, 31525256..31525360,31525445..31525494,31525816..31525933, 31526572..31527255,31528564..31528658) /locus_tag="TCM_016149" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08530.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10321t4" mRNA join(31519494..31520071,31520549..31520667, 31520753..31520859,31520950..31521037,31522600..31523674, 31523956..31524010,31524128..31524209,31524390..31524470, 31525256..31525360,31525445..31525494,31525816..31525933, 31526556..31527385) /locus_tag="TCM_016149" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08530.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08530.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b015604t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10321t4" mRNA join(31519757..31520071,31520549..31520667, 31520753..31520859,31520950..31521037,31522600..31523674, 31523956..31524010,31524128..31524209,31524390..31524470, 31525256..31525361,31526573..31527605) /locus_tag="TCM_016149" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08530.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08530.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc877t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10321t4" mRNA join(31519757..31520071,31520549..31520667, 31520753..31520859,31520950..31521037,31522600..31523678, 31523922..31523949,31523969..31524010,31524128..31524209, 31524390..31524470,31525256..31525494,31525816..31525933, 31526556..31526582) /locus_tag="TCM_016149" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08530.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08530.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc877t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10321t4" mRNA join(31519757..31520071,31520549..31520667, 31520753..31520859,31520950..31521037,31522600..31523678, 31523922..31523949,31523969..31524010,31524128..31524209, 31524390..31524470,31525256..31525361,31525935..31526581) /locus_tag="TCM_016149" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08530.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08530.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc877t1_C1; alternateUTRof:Thecc1EG016149t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10321t4" mRNA join(31519757..31520071,31520549..31520667, 31520753..31520859,31520950..31521037,31522600..31523699, 31523956..31524010,31524128..31524209,31524390..31524470, 31525256..31525361,31525905..31526551) /locus_tag="TCM_016149" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08530.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08530.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc859t4_C2; alternateUTRof:Thecc1EG016149t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10321t4" CDS join(31519834..31520071,31520549..31520667, 31520753..31520859,31520950..31521037,31522600..31523674, 31523956..31524010,31524128..31524209,31524390..31524470, 31525256..31525360,31525445..31525494,31525816..31525933, 31526556..31526696) /locus_tag="TCM_016149" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24585.1" /db_xref="Phytozome:POPTR_0001s08530.1" /db_xref="TAIR:AT4G11860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKQ9" /translation="MSAAAAPHPDAPAASSSSPSPSSVSESKEEAVKDEQNQEQEKQE DIKECMHKTKTIQFLGRTTPIILQNDNGPCPLLAICNILLLRNNLNLSPEISEVSQEK LLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPCLATGIDVNIKFRRIDDFE FTPECAIFDLLDIPLYHGWIVDPQDYETASAIGSKSYNAIMGELVALETRNMEVSRKN NSEDCVDFAAATTATLGVPSPSLSKTRSFDDSPCSASDQQRLRKGDLEEEAELLRALK LSEAELPTSVGDPGSLDERSCLKNLVSVDSVDTPEGDKGVEDQNLHWHEPFFSDNCNA LSNDSGSKTFFETITREVFSKTDGVNQNQSSYVISGEPTLSNDVVEKSSVETTVVKWS SADELSQIEGAVPVSLAKDTACIDGNNTEISPGGEKIETQSTSATDAQKIPDNVNGCD MTEVSSVSIQNADSDSSSGRIHHADVPEAFTSSLDGSEPIYEGEECILDSVTTTYEDR EPIYEGEVILAEQADKKAVEGCNVRSKDEITPQQGELIANFLKNNASQLTFYGLFCLQ DGLKERELCVFFRNNHFSTMFKYDGELYLLATDQGYLNQPDLVWEKLNEVNGDTLFMT GNFKEFKVDSHASGTWDEQNAMASTADYIASIDSAAQAGLDITSDLQLAIALQQQEFE QQPQRQNVQQPPIVGASRLVTGPQKWHFAGAKKQRKELFIFIIKARCKIKRQVYRDVS FRHQCIWEVVLL" CDS join(31519834..31520071,31520549..31520667, 31520753..31520859,31520950..31521037,31522600..31523674, 31523956..31524010,31524128..31524209,31524390..31524470, 31525256..31525361,31526573..31526655) /locus_tag="TCM_016149" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY24588.1" /db_xref="Phytozome:POPTR_0001s08530.1" /db_xref="TAIR:AT4G11860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW47" /translation="MSAAAAPHPDAPAASSSSPSPSSVSESKEEAVKDEQNQEQEKQE DIKECMHKTKTIQFLGRTTPIILQNDNGPCPLLAICNILLLRNNLNLSPEISEVSQEK LLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPCLATGIDVNIKFRRIDDFE FTPECAIFDLLDIPLYHGWIVDPQDYETASAIGSKSYNAIMGELVALETRNMEVSRKN NSEDCVDFAAATTATLGVPSPSLSKTRSFDDSPCSASDQQRLRKGDLEEEAELLRALK LSEAELPTSVGDPGSLDERSCLKNLVSVDSVDTPEGDKGVEDQNLHWHEPFFSDNCNA LSNDSGSKTFFETITREVFSKTDGVNQNQSSYVISGEPTLSNDVVEKSSVETTVVKWS SADELSQIEGAVPVSLAKDTACIDGNNTEISPGGEKIETQSTSATDAQKIPDNVNGCD MTEVSSVSIQNADSDSSSGRIHHADVPEAFTSSLDGSEPIYEGEECILDSVTTTYEDR EPIYEGEVILAEQADKKAVEGCNVRSKDEITPQQGELIANFLKNNASQLTFYGLFCLQ DGLKERELCVFFRNNHFSTMFKYDGELYLLATDQGYLNQPDLVWEKLNEVNGDTLFMT GNFKEFKVDSHASGTWDEQNAMASTAVPRNSGRNSSSSSSKQDAKSKDKCIVM" CDS join(31519834..31520071,31520549..31520667, 31520753..31520859,31520950..31521037,31522600..31523674, 31523956..31524010,31524128..31524209,31524390..31524470, 31525256..31525360,31525445..31525494,31525816..31525933, 31526572..31526655) /locus_tag="TCM_016149" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24584.1" /db_xref="Phytozome:POPTR_0001s08530.1" /db_xref="TAIR:AT4G11860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKQ9" /translation="MSAAAAPHPDAPAASSSSPSPSSVSESKEEAVKDEQNQEQEKQE DIKECMHKTKTIQFLGRTTPIILQNDNGPCPLLAICNILLLRNNLNLSPEISEVSQEK LLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPCLATGIDVNIKFRRIDDFE FTPECAIFDLLDIPLYHGWIVDPQDYETASAIGSKSYNAIMGELVALETRNMEVSRKN NSEDCVDFAAATTATLGVPSPSLSKTRSFDDSPCSASDQQRLRKGDLEEEAELLRALK LSEAELPTSVGDPGSLDERSCLKNLVSVDSVDTPEGDKGVEDQNLHWHEPFFSDNCNA LSNDSGSKTFFETITREVFSKTDGVNQNQSSYVISGEPTLSNDVVEKSSVETTVVKWS SADELSQIEGAVPVSLAKDTACIDGNNTEISPGGEKIETQSTSATDAQKIPDNVNGCD MTEVSSVSIQNADSDSSSGRIHHADVPEAFTSSLDGSEPIYEGEECILDSVTTTYEDR EPIYEGEVILAEQADKKAVEGCNVRSKDEITPQQGELIANFLKNNASQLTFYGLFCLQ DGLKERELCVFFRNNHFSTMFKYDGELYLLATDQGYLNQPDLVWEKLNEVNGDTLFMT GNFKEFKVDSHASGTWDEQNAMASTADYIASIDSAAQAGLDITSDLQLAIALQQQEFE QQPQRQNVQQPPIVGASRLVTGPQVPRNSGRNSSSSSSKQDAKSKDKCIVM" CDS join(31519834..31520071,31520549..31520667, 31520753..31520859,31520950..31521037,31522600..31523678, 31523922) /locus_tag="TCM_016149" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY24586.1" /db_xref="Phytozome:POPTR_0001s08530.1" /db_xref="TAIR:AT4G11860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKQ9" /translation="MSAAAAPHPDAPAASSSSPSPSSVSESKEEAVKDEQNQEQEKQE DIKECMHKTKTIQFLGRTTPIILQNDNGPCPLLAICNILLLRNNLNLSPEISEVSQEK LLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPCLATGIDVNIKFRRIDDFE FTPECAIFDLLDIPLYHGWIVDPQDYETASAIGSKSYNAIMGELVALETRNMEVSRKN NSEDCVDFAAATTATLGVPSPSLSKTRSFDDSPCSASDQQRLRKGDLEEEAELLRALK LSEAELPTSVGDPGSLDERSCLKNLVSVDSVDTPEGDKGVEDQNLHWHEPFFSDNCNA LSNDSGSKTFFETITREVFSKTDGVNQNQSSYVISGEPTLSNDVVEKSSVETTVVKWS SADELSQIEGAVPVSLAKDTACIDGNNTEISPGGEKIETQSTSATDAQKIPDNVNGCD MTEVSSVSIQNADSDSSSGRIHHADVPEAFTSSLDGSEPIYEGEECILDSVTTTYEDR EPIYEGEVILAEQADKKAVEGCNVRSKDEITPQQG" CDS join(31519834..31520071,31520549..31520667, 31520753..31520859,31520950..31521037,31522600..31523678, 31523922) /locus_tag="TCM_016149" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY24589.1" /db_xref="Phytozome:POPTR_0001s08530.1" /db_xref="TAIR:AT4G11860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKQ9" /translation="MSAAAAPHPDAPAASSSSPSPSSVSESKEEAVKDEQNQEQEKQE DIKECMHKTKTIQFLGRTTPIILQNDNGPCPLLAICNILLLRNNLNLSPEISEVSQEK LLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPCLATGIDVNIKFRRIDDFE FTPECAIFDLLDIPLYHGWIVDPQDYETASAIGSKSYNAIMGELVALETRNMEVSRKN NSEDCVDFAAATTATLGVPSPSLSKTRSFDDSPCSASDQQRLRKGDLEEEAELLRALK LSEAELPTSVGDPGSLDERSCLKNLVSVDSVDTPEGDKGVEDQNLHWHEPFFSDNCNA LSNDSGSKTFFETITREVFSKTDGVNQNQSSYVISGEPTLSNDVVEKSSVETTVVKWS SADELSQIEGAVPVSLAKDTACIDGNNTEISPGGEKIETQSTSATDAQKIPDNVNGCD MTEVSSVSIQNADSDSSSGRIHHADVPEAFTSSLDGSEPIYEGEECILDSVTTTYEDR EPIYEGEVILAEQADKKAVEGCNVRSKDEITPQQG" CDS join(31519834..31520071,31520549..31520667, 31520753..31520859,31520950..31521037,31522600..31523679) /locus_tag="TCM_016149" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY24587.1" /db_xref="Phytozome:POPTR_0001s08530.1" /db_xref="TAIR:AT4G11860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKQ9" /translation="MSAAAAPHPDAPAASSSSPSPSSVSESKEEAVKDEQNQEQEKQE DIKECMHKTKTIQFLGRTTPIILQNDNGPCPLLAICNILLLRNNLNLSPEISEVSQEK LLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPCLATGIDVNIKFRRIDDFE FTPECAIFDLLDIPLYHGWIVDPQDYETASAIGSKSYNAIMGELVALETRNMEVSRKN NSEDCVDFAAATTATLGVPSPSLSKTRSFDDSPCSASDQQRLRKGDLEEEAELLRALK LSEAELPTSVGDPGSLDERSCLKNLVSVDSVDTPEGDKGVEDQNLHWHEPFFSDNCNA LSNDSGSKTFFETITREVFSKTDGVNQNQSSYVISGEPTLSNDVVEKSSVETTVVKWS SADELSQIEGAVPVSLAKDTACIDGNNTEISPGGEKIETQSTSATDAQKIPDNVNGCD MTEVSSVSIQNADSDSSSGRIHHADVPEAFTSSLDGSEPIYEGEECILDSVTTTYEDR EPIYEGEVILAEQADKKAVEGCNVRSKDEITPQQG" mobile_element complement(31529174..31529392) /note="source:CACAO_Mariner_E180_scaffold_6 4916 5170" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 31531154..31531748 /note="source:CACAO_MITE_S202_scaffold_8 1 598" /mobile_element_type="transposon:TIR/MITE" gene 31535035..31540477 /locus_tag="TCM_016150" /note="dbxref CacaoGD:Thecc1EG016150" mRNA join(31535035..31535435,31535625..31535745, 31539200..31539390,31539612..31539743,31540018..31540477) /locus_tag="TCM_016150" /product="KNOTTED-like homeobox of 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038269t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08550.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03278t00001" CDS join(31535121..31535435,31535625..31535745, 31539200..31539390,31539612..31539743,31540018..31540158) /locus_tag="TCM_016150" /note="paralog of Thecc1EG038269t1" /codon_start=1 /product="KNOTTED-like homeobox of 7" /protein_id="EOY24590.1" /db_xref="Phytozome:POPTR_0001s08550.1" /db_xref="TAIR:AT1G62990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FPQ8" /translation="MQEPGLGMMSSGGSGAIGGLSSGEVSVSGDQNRQLRAEIATHPL YEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHNLLRSYASQHHQHGHSLSPHERQELD NFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACREIENNLQALTGVSLGEGTGATMSDD EDELQMDFSLDQSGADGHDLMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDV REEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI NQRKRNWHSNSQSVTSLKSKRKR" gene complement(31541143..31542797) /locus_tag="TCM_016152" /note="dbxref CacaoGD:Thecc1EG016152" mRNA complement(join(31541143..31541924,31542430..31542797)) /locus_tag="TCM_016152" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage" CDS complement(join(31541652..31541924,31542430..31542780)) /locus_tag="TCM_016152" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24591.1" /translation="MVHSAGKKRFETTKMEIPMLVKQGTGQSQRRNSTRQILGLGSCS EISFRVWSLVYPAIIKLVVFWFPLQGWFTSSRESRPFIYLEHQQPRQGATALSTPPVS PKEVKESPSKLFTFHLTRNDRVQGSQSNEVLNSVSKKQFSISWQKSEESNGKCFKQKV HVICLYPVYCLAWSAFFQRGSITINLRVNDVEPKAVATLCSDDVSPI" gene 31542912..31549779 /locus_tag="TCM_016153" /note="dbxref CacaoGD:Thecc1EG016153" mRNA join(31542912..31544289,31545140..31545253, 31545489..31545683,31546114..31546362,31546487..31546555, 31546650..31546797,31547120..31547268,31547481..31547657, 31547755..31547952,31548493..31549779) /locus_tag="TCM_016153" /product="Phospholipase D beta 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011102" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005448t1" /inference="similar to AA sequence:ricco:30190.m011102" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1525t1" CDS join(31543324..31544289,31545140..31545253, 31545489..31545683,31546114..31546362,31546487..31546555, 31546650..31546797,31547120..31547268,31547481..31547657, 31547755..31547952,31548493..31548786) /locus_tag="TCM_016153" /note="dbxref ricco:30190.m011102; paralog of Thecc1EG005448t1" /codon_start=1 /product="Phospholipase D beta 1" /protein_id="EOY24592.1" /db_xref="TAIR:AT2G42010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93733" /translation="MASTLFHETLSFGSSSHGQGQQVLPFKTTDGSLKVLLLHGNLDI WVKEAKNLPNMDIFHKKLGDVFGKFNLKVSSKIEGHMPHKITSDPYVTVSAAGAVIGR TFVISNTENPVWMQHFNIPVAHYAPEVHFVVKDSDVVGSQIMGAVGIPVEKLCSGTKV EGTFPILNASGKPCKPGAVLTLSIQYTPTEKVALYHRGLGSGPDHHGVPGTYFPLRKG GKVTLYQDVHVHDGFLPNLKVDGNVQYEHGNCWQDICNAISQARRLIYIAGWSVYHNV RLVRETDKATNSTLGDLLKTKSQEGVRVLLLVWDDPTSRSILGYKTEGIMHTNDEETR RFFKHSSVQVLLCPRSAGRGSWVKKQETGTIYTHHQKTVIVDADAGNNKRKVTAFVGG LDLCNGRYDTPNHPLFRTLQTVHKDDYRNPNFTENDAGCPRQPWHDLHCRIDGPAAYD ILTNFEERWLKASKPHGLQKLKTSVDDALLKIERIPEIAGITEIPYLREDDPETWHVQ VFRSIDSNSVKGFPDDPKDATRMNLVCGKNVLIDMSIHTAYVNAIRAAQRFIYIENQY FLGSSFNWDSHKDLGANNLIPMEIALKIANKIRSNERFSAYILIPMWPEGVTTSTPIQ RILFWQHKTMQMMYDIVYKALVEVGLENKYEPQDFLNFFCLGNREAVNGGDSLDPRSS FASNSPQALAQKNRRFMIYIHSKGMIVDDEYVIIGSANINQRSMEGTRDTEIAMGAYQ PHHAGSTKPYNSHGQVYGYRMSLWAEHIGALEQSFKQPESLECVRRVRSLGEQNWRQY VADEVTEMKGHLLKYPVEVDRMGKVKALPGCETFPDVGGKILGSFTAIQENLTI" mobile_element complement(31550102..31550794) /note="source:CACAO_on_E373_scaffold_1 2 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 31551547..31554037 /locus_tag="TCM_016154" /note="dbxref CacaoGD:Thecc1EG016154" mRNA join(31551547..31552203,31552686..31553211, 31553801..31554037) /locus_tag="TCM_016154" /product="Nucleotide-rhamnose synthase/epimerase-reductase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12000.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032135t1" /inference="similar to AA sequence:ricco:30190.m011104" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10006t1" CDS join(31551754..31552203,31552686..31553138) /locus_tag="TCM_016154" /note="dbxref ricco:30190.m011104; paralog of Thecc1EG032135t1" /codon_start=1 /product="Nucleotide-rhamnose synthase/epimerase-reductase" /protein_id="EOY24593.1" /db_xref="TAIR:AT1G63000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYM5" /translation="MGYPANGSSEKPLKFLIYGRTGWIGGLLGKLCESKGIDYQYGSG RLENRLSLESDIASVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCR DKGLVLINYATGCIFEYDAGHPIESGVGFKEEDTPNFTGSFYSKTKAMVEELLKNYEN VCTLRVRMPISSDLANPRNFITKITRYDKVVNIPNSMTILDELLPISIEMAKRNLTGI WNFTNPGVVSHNEILEMYHDYIDSNFSWKNFTLEEQAKVIIAPRSNNELDTNKLKNEF PELLSIKESLVKYVFEPNKKTLGA" gene complement(31553716..31556590) /locus_tag="TCM_016155" /note="dbxref CacaoGD:Thecc1EG016155" mRNA complement(join(31553716..31553983,31554142..31554252, 31556206..31556590)) /locus_tag="TCM_016155" /product="Nucleotide-rhamnose synthase/epimerase-reductase, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g03640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032135t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08570.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5175t1_C2" CDS complement(join(31553905..31553983,31554142..31554252, 31556206..31556516)) /locus_tag="TCM_016155" /note="paralog of Thecc1EG032135t1" /codon_start=1 /product="Nucleotide-rhamnose synthase/epimerase-reductase, putative" /protein_id="EOY24594.1" /db_xref="Phytozome:POPTR_0001s08570.1" /db_xref="TAIR:AT1G63000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C3L4" /translation="MEFRADGNAKPLGLRFLIYGRTGCIGGLLGRICEAQGIPFAYGS GRLEDRESLRADIVAVQPSHVFNAAGATGRPNVDWCEFNKIETIRSNAIGALSIADIL LQSTEQPSPNPNSSSFTPLPELILPGSSTRLLLYSPRPRGHTHNAIPSRFSFPGDLLA LVALWP" gene complement(31560274..31561169) /locus_tag="TCM_016156" /note="dbxref CacaoGD:Thecc1EG016156" mRNA complement(join(31560274..31560677,31561038..31561169)) /locus_tag="TCM_016156" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2013t8_C1" CDS complement(31560459..31560626) /locus_tag="TCM_016156" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24595.1" /translation="MPLSSDLSHHHNFIKKITSYEKVVNSPNSMMVLDELFPISIEMV KFYQPQSALSQ" gene complement(31561309..31564237) /locus_tag="TCM_016157" /note="dbxref CacaoGD:Thecc1EG016157" mRNA complement(join(31561309..31561855,31562040..31562138, 31562425..31562529,31562616..31562762,31562838..31562924, 31563004..31563060,31563739..31564237)) /locus_tag="TCM_016157" /product="Eukaryotic translation initiation factor 2 subunit 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g35600.1" /inference="similar to AA sequence:Phytozome:Glyma18g02820.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03466t00001" CDS complement(join(31561700..31561855,31562040..31562138, 31562425..31562529,31562616..31562762,31562838..31562924, 31563004..31563060,31563739..31564110)) /locus_tag="TCM_016157" /codon_start=1 /product="Eukaryotic translation initiation factor 2 subunit 1" /protein_id="EOY24596.1" /db_xref="Phytozome:Glyma18g02820.1" /db_xref="TAIR:AT2G40290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FE78" /translation="MPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEG MILFSELSRRRIRSVSSLIKVGRTEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERY NKSKLVHSIMRHVAETLDIDLEDLYIKIGWPLYRKYGHAFEAFKIIVTDPDSVLNTLT CEVKKPGPDGQEVTEVVPAVTEEVKDALIKNIRRRMTPQPLKIRADIEMKCFQFDGVL HIKEAMREAVAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGIAILNKAIAACTEAIEH HKGKLAVKEHPRAVSERDDKLLAEHMAKLRNDNEEVSGDEDSEEEEDTGMGEVDVENA SHGIME" mobile_element 31564308..31564584 /note="source:CACAO_on_E545_scaffold_5 18 322" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 31564588..31565247 /note="source:scaffold_4_CACTA_0482 5174 5906" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31565370..31565412 /note="source:scaffold_4_CACTA_0482 5864 5906" /mobile_element_type="transposon:TIR/CACTA" gene complement(31565837..31569764) /locus_tag="TCM_016158" /note="dbxref CacaoGD:Thecc1EG016158" mRNA complement(join(31565837..31566726,31566824..31567037, 31567129..31567240,31567351..31567673,31567763..31568276, 31568564..31568762,31568858..31568952,31569275..31569363, 31569483..31569764)) /locus_tag="TCM_016158" /product="Subtilase family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011107" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016159t1" /inference="similar to AA sequence:ricco:30190.m011107" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(31566092..31566726,31566824..31567037, 31567129..31567240,31567351..31567673,31567763..31568276, 31568564..31568762,31568858..31568952,31569275..31569363, 31569483..31569584)) /locus_tag="TCM_016158" /note="dbxref ricco:30190.m011107; paralog of Thecc1EG016159t1" /codon_start=1 /product="Subtilase family protein" /protein_id="EOY24597.1" /db_xref="TAIR:AT5G59190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW49" /translation="MAKKGLMISRLYSMLFAAFCLINCHAAADANERKVHIVYMGDRP KGEFSAATTHHSMLKGVLGSASSAKKSLIYSYGSFNGFAAKLTDEEVRRFSEMDGVVR VIPNHILKLHTTRSWDFIGFTQDAVGAKPEGDVVIGLLDTGKLMNHTQTAMVLTKIKS SHKIIGGRYYNSENWYDETDFKSPRDSEGHGTHTSSTAAGDKVPGASYYGLANGTARG GVPGARIAMYKVCWSFGCATADILAAFDDAIADGVDVISVSLGADWPLAYDEDPIAIG AFHAMKNGILTSNSAGNSGPWPYSVSNYAPWTLTVAASTIDRKFVAKAVLGNGQVFTG LSINSFELHGKSFPLIWGGHAANYSAGASPDISRYCITGFMNSYKVEGKIVFCETLWD GTGVLQAGGVGTIMADDEITDFAFNYPLPATQISASDGEKVLDYIKTTENPTATILLG ETWTDYMAPYVVSFSSRGPNPITPDILKPDLTAPGVDIIAAWSPVAPPSVDWEDPRSV DYNIISGTSMSCPHASGAAAYVKAAHPDWSPAAIKSALMTTATLVDPKKHEDLEFAYG SGQINPTRALSPGLVYDANETDYINFLCKQGYNTTTIRLITGDNSSVCTSTTPGPAWD LNYPSFSLAVLDGQPIYGVFTRTVTNVGPPNSNYTVWMTTQRGFTISVEPQFLSFSTV GEKKSFTVRVTGPKISQQPITSGSIVWVSSDYKYMARSPVVVYNVLPTPYSPYDSKSQ RKPTFRRPSMYHKNGILGRN" gene complement(31570739..31575604) /locus_tag="TCM_016159" /note="dbxref CacaoGD:Thecc1EG016159" mRNA complement(join(31570739..31572172,31572267..31572480, 31572584..31572695,31572824..31573146,31573231..31573744, 31573981..31574080,31574166..31574306,31574467..31574561, 31574841..31574929,31575035..31575604)) /locus_tag="TCM_016159" /product="Subtilase family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011107.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016158t1" /inference="similar to AA sequence:ricco:30190.m011107" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS complement(join(31571532..31572172,31572267..31572480, 31572584..31572695,31572824..31573146,31573231..31573744, 31573981..31574080,31574166..31574306,31574467..31574561, 31574841..31574929,31575035..31575127)) /locus_tag="TCM_016159" /note="dbxref ricco:30190.m011107; paralog of Thecc1EG016158t1" /codon_start=1 /product="Subtilase family protein" /protein_id="EOY24598.1" /db_xref="TAIR:AT5G59090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW49" /translation="MAKKGLIPLLCSLLFAAFLLNSHAANASERKIHVVYMGDRLKGD LSAKRVHYSMLTSVLGSSSSAKESLVYSYGNFNAFAAKLTEEEVKTFSEMDGVVRVIP NHILQLHTTRSWDFLGFSQSSLGARIEGDVVIGLLDTGIWPEHESFTNQELGAPPSKW KGICQGANFTCNNKIVGARYYNSEEWYSDTDFKSPRDSEGHGTHTSSTAAGNRVADAS YYGLANGIARGGVPGARIAMYKVCWSFGCATADILAAFDDAIADGVDIISVSLGFIFA LAYDEDPIAIGAFHAMKNGILTSNSAGNSGPWPYSVVNFAPWTLTVAASTIDRKFVTR VELGNGMSYAGPSINSFDLHGKSYPLIWGGDAANYSAGSNPDLSKYCINGYLNSYRVY GNIVFCELLWDGTGILEASGVGTIMASDRLKDFAFSFPLPATVISTKDGEQILDYIRS AEYPVATILFGETWSDVMAPYVVSFSSRGPNPMNPDILKPDLTAPGVDIIAAWSPVAP PSVAYEDPRSVNYNIISGTSMSCPHASGAAAYVKAAHPDWSPAAVKSALMTTATVMDS TKHEDLEFAYGSGQINPAHAIEPGLVYDANETDYINFLCKQGYNTTTIRLITGDNSSV CTSTVIGRAWDLNYPSFSLAVEDGEPISGVFTRTVTNVGSANSTYTVRMYSPSNFSIS VEPQVLSFSTVGEKKSYTVTVTGGTISQQKIMSGAIIWTDGDHQYEVRSPVVVYNVLP GYTYFPPQNSKFQEKPTFQGPSMYEKYGVLRRN" gene 31577112..31578300 /locus_tag="TCM_016160" /note="dbxref CacaoGD:Thecc1EG016160" mRNA join(31577112..31577381,31577892..31578300) /locus_tag="TCM_016160" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(31577335..31577381,31577892..31578048) /locus_tag="TCM_016160" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24599.1" /translation="MVETMGPSEKQLRETGLRGTGKGRAEICVVIGCGTLRYEGGPTT SSRTTPPTNRTEIGPSPDPYLHV" gene complement(31578202..31580367) /locus_tag="TCM_016161" /note="dbxref CacaoGD:Thecc1EG016161" mRNA complement(31578202..31580367) /locus_tag="TCM_016161" /product="TCP family transcription factor, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005447t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08590.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1141t2_C1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1141t3_C1" CDS complement(31578906..31580078) /locus_tag="TCM_016161" /note="paralog of Thecc1EG005447t1" /codon_start=1 /product="TCP family transcription factor, putative" /protein_id="EOY24600.1" /db_xref="Phytozome:POPTR_0001s08590.1" /db_xref="TAIR:AT2G45680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKQ5" /translation="MDPDDDGGTSDLSTSAGEPNTATATTANNKNNDKNCENSAFPVM PLKEEPTETDPDRKTHPSPPVGVVPVAMQIQQMPMQIPAMPMPVTTAKRSSTKDRHTK VEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIA VSVGGTLKIPTTSSANTSNNNNSNNNKQIDDGATKKRKRPANSEFCDISDGIPFAVSQ NQQQLVTQASGLAPVTPQGVVPVWAVGNTGMMVPANAFWMIPQPAATAAGNGLTNQQP SPQIWTLSPSLTPVFNVAARPISSFVATTNQVQAVVGNGLSTLAVNTSSTAVGATVSK KSTMAPSVSSGGSGSGSTGGKPQLLRDFSLEIYDKQELQFMGRSGNHHQQMQASKQ" gene complement(31581530..31582767) /locus_tag="TCM_016162" /note="dbxref CacaoGD:Thecc1EG016162" mRNA complement(31581530..31582767) /locus_tag="TCM_016162" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.19 coverage" mobile_element complement(31581592..31581687) /note="source:scaffold_1_CACTA_0016 1414 1509" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31581812..31582053) /note="source:scaffold_2_CACTA_0248 14096 14353" /mobile_element_type="transposon:TIR/CACTA" CDS complement(31582486..31582704) /locus_tag="TCM_016162" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24601.1" /translation="MRNKFGQIFAVIRGSKRHMGSWVLPYTNGPSQSQPSPSRATALP IRTMAHDIPLALIPLSLPLFPILTATPF" mobile_element complement(31583372..31583457) /note="source:INTACT383F_F354_scaffold_3-int 1114 1198" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(31583609..31588442) /locus_tag="TCM_016163" /note="dbxref CacaoGD:Thecc1EG016163" mRNA complement(join(31583609..31584255,31584581..31584730, 31584818..31584958,31585126..31585213,31585301..31585356, 31585459..31585534,31585623..31585696,31585923..31586081, 31586458..31586601,31586866..31586998,31587157..31587263, 31588192..31588442)) /locus_tag="TCM_016163" /product="Hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase" /inference="alignment:exonerate- protein:2:ricco:30190.m011109" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015055t1" /inference="similar to AA sequence:ricco:30190.m011109" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15532t00001" CDS complement(join(31584049..31584255,31584581..31584730, 31584818..31584958,31585126..31585213,31585301..31585356, 31585459..31585534,31585623..31585696,31585923..31586081, 31586458..31586601,31586866..31586998,31587157..31587263, 31588192..31588254)) /locus_tag="TCM_016163" /note="dbxref ricco:30190.m011109; paralog of Thecc1EG015055t1" /codon_start=1 /product="Hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase" /protein_id="EOY24602.1" /db_xref="TAIR:AT4G11820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P54873" /translation="MAKNVGILAMDIYFPPTCVRQEALEAHDGASKGKYTIGLGQDCM AFCTEVEDVISMSLTVVTSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK CGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTG GAAAIAMLVGPDAPIAFESKLRGSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMALD SCYKYFCHKYEKLVGKQFSLSDAEYFVFHSPYNKLVQKSFSRLLFNDFLRNASSVDDI AKEKLGPFSTLTGDESYQSRDLEKASQQVSKPLYDAKVQPTTLIPKQVGNMYTASLYA AFVSLIHNKHSELAGKRVILFSYGSGLTATMFSLRLNEGQHPFSLSNIATVMNVAGKL KSRHEFPPEKFVATMKLMEHRYGAKDFVTSKDCSLLSPGTYYLTEVDSMYRRFYAKKD GDFTACENGSLSNGH" mobile_element 31595043..31595926 /note="source:scaffold_5_CACTA_0607 10204 11107" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31595917..31596174 /note="source:scaffold_5_CACTA_0607 11711 11967" /mobile_element_type="transposon:TIR/CACTA" gene complement(31596741..31599967) /locus_tag="TCM_016164" /note="dbxref CacaoGD:Thecc1EG016164" mRNA complement(join(31596741..31599290,31599419..31599967)) /locus_tag="TCM_016164" /product="Pyridoxal phosphate-dependent transferases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011110" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015061t1" /inference="similar to AA sequence:ricco:30190.m011110" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13020t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc8213t1" CDS complement(31597034..31598992) /locus_tag="TCM_016164" /note="dbxref ricco:30190.m011110; paralog of Thecc1EG015061t1" /codon_start=1 /product="Pyridoxal phosphate-dependent transferases superfamily protein" /protein_id="EOY24603.1" /db_xref="TAIR:AT5G51920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKQ3" /translation="MHSPCLREASQACYGCCLNPFPGLPESRAATSQIPRSAAASRYE FEVCTASSLCPNFQFTNHESLPSSEESFSYFIKVYPQYSQTDQADKIRAQEYYHLSLS KHVCLDYIGHGLFSYSQLESQCPGSPAASSSSSPPPPPPPPVRSVTLEAPFFDVSYKS VNLNSQILYGGEESEFESNIRKRIMAFMNISEADYTMVLSANQSSASKLLAESYPFQS YQNLLTVYDYQSEAVEVMIESSKKRGANVMSANFSWPNLSIQSEKLRKKIANKSKHKK KGLFVFPLQSRVTGSRYSYLWMSLAQENGWHVLLDASALGAKDMETLGLSLFNPDFLI CSFFKVFGENPSGFCCLFIRKSSASVLKDSTTATSIGIVNLVPGSEPTRIPESSAISS IETRKKSKEFPAQGSFSGPISIQQRRDETTLDLHKTEGINRKQKTVSFSEIEEVIETS FESASSIINNTRQSKNPKIECRSLDHADSLGLILISSRTRNLINWLVNALMSLQHPHS ENGIPAVKIYGPKIMFDRGPAVAFNVFDWKGEKIDPVLVQKLADRNNISLSIGFLQHI WFSDKHEEEKEKQLETRTSEAEEPVSSKKRDKFHSGISVVTAALGFLTNFEDIYRLWA FVSRFLDADFLEKEKWRYKALNQKTIEI" gene 31599597..31603457 /locus_tag="TCM_016165" /note="dbxref CacaoGD:Thecc1EG016165" mRNA join(31599597..31599968,31601031..31601246, 31602869..31602985,31603317..31603457) /locus_tag="TCM_016165" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.98 coverage" CDS join(31599868..31599968,31601031..31601184) /locus_tag="TCM_016165" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24604.1" /translation="MIDKSSSTAEVWPQHVRDHRQFSIFEPKKDSSPKPRYNKCEAVP KSLLTRSSPCPQGHVLAPMQLQIALSGDGLSQVLPYQNQG" gene complement(31600551..31609026) /locus_tag="TCM_016166" /note="dbxref CacaoGD:Thecc1EG016166" mRNA complement(join(31600551..31600615,31603566..31603947, 31604158..31604723,31604896..31605287,31605375..31605676, 31605893..31606232,31607189..31607800,31608929..31609026)) /locus_tag="TCM_016166" /product="Glucose-methanol-choline oxidoreductase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015068t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08620.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00206t00002" mRNA complement(join(31600849..31601246,31602869..31602973, 31603319..31603947,31604158..31604723,31604896..31605287, 31605375..31605676,31605893..31606232,31607189..31607271)) /locus_tag="TCM_016166" /product="Glucose-methanol-choline oxidoreductase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015068t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08620.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2981t3_C2; alternateUTRof:Thecc1EG016166t1; inference alignment:Newbler:10:TSA:cgbaB_g00206t00002" mRNA complement(join(31603315..31603947,31604158..31604723, 31604896..31605287,31605375..31605676,31605893..31606232, 31607189..31607285,31607361..31607535)) /locus_tag="TCM_016166" /product="Glucose-methanol-choline oxidoreductase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015068t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08620.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3136t2; alternateUTRof:Thecc1EG016166t1; inference alignment:Newbler:10:TSA:cgbaB_g00206t00002" mRNA complement(join(31603396..31603947,31604158..31604723, 31604896..31605287,31605375..31605676,31605893..31606232, 31607189..31607800,31608929..31609026)) /locus_tag="TCM_016166" /product="Glucose-methanol-choline oxidoreductase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015068t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08620.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b015621t1a2; alternateUTRof:Thecc1EG016166t1; inference alignment:Newbler:10:TSA:cgbaB_g00206t00002" CDS complement(join(31603905..31603947,31604158..31604723, 31604896..31605287,31605375..31605676,31605893..31606232, 31607189..31607270)) /locus_tag="TCM_016166" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015068t1" /codon_start=1 /product="Glucose-methanol-choline oxidoreductase family protein isoform 1" /protein_id="EOY24605.1" /db_xref="Phytozome:POPTR_0001s08620.1" /db_xref="TAIR:AT1G12570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYV8" /translation="MSLGWWKLVGAALAGILFFHGFSASEKAPNYSFMHNATSAPSLS YYDYIIVGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNISNMASFGAALSDVSPSS PSQRFISEDGVINARARVLGGGSCLNAGFYTRAGTEYVRQAGWDGRLVNESYQWVEKL VAFEPPMGQWQSAVRDGLIEAGVLPFNGFTYDHIFGTKVGGTIFDQQGNRHTAADLLE YATPSGLTVLLHASVHKILFAIKGNRRPKAHGVIFRDASGAKHKAYLKKGSKNEIIVS AGALGSPQLLMLSGVGPTAHLKAHNITVVLDQPLVGQGMSDNPMNAVFVPSPLPVEVS LIQVVGITHFGSYIEAASGENFAGGAASSRDYRMFSPKIGQLSTVPPKPRSPEAIAKA VEYSSNQDKPAFRGGFILEKIMGPISTGHLELRTRNLNDNPSVTFNYFKDPQDLQRCV QGIQTIQKIVESKPFSKFRFDYMSWPILLNMTASAPLNLLPKHYNPSMPLEVYCKDTV MTIWHYHGGCQVGRVVDLDYKVLGVDALRVIDGSTFNYSPGTNPQATVMMLGRYMGVK ILSERLAN" CDS complement(join(31603905..31603947,31604158..31604723, 31604896..31605287,31605375..31605676,31605893..31606232, 31607189..31607270)) /locus_tag="TCM_016166" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015068t1" /codon_start=1 /product="Glucose-methanol-choline oxidoreductase family protein isoform 1" /protein_id="EOY24606.1" /db_xref="Phytozome:POPTR_0001s08620.1" /db_xref="TAIR:AT1G12570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYV8" /translation="MSLGWWKLVGAALAGILFFHGFSASEKAPNYSFMHNATSAPSLS YYDYIIVGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNISNMASFGAALSDVSPSS PSQRFISEDGVINARARVLGGGSCLNAGFYTRAGTEYVRQAGWDGRLVNESYQWVEKL VAFEPPMGQWQSAVRDGLIEAGVLPFNGFTYDHIFGTKVGGTIFDQQGNRHTAADLLE YATPSGLTVLLHASVHKILFAIKGNRRPKAHGVIFRDASGAKHKAYLKKGSKNEIIVS AGALGSPQLLMLSGVGPTAHLKAHNITVVLDQPLVGQGMSDNPMNAVFVPSPLPVEVS LIQVVGITHFGSYIEAASGENFAGGAASSRDYRMFSPKIGQLSTVPPKPRSPEAIAKA VEYSSNQDKPAFRGGFILEKIMGPISTGHLELRTRNLNDNPSVTFNYFKDPQDLQRCV QGIQTIQKIVESKPFSKFRFDYMSWPILLNMTASAPLNLLPKHYNPSMPLEVYCKDTV MTIWHYHGGCQVGRVVDLDYKVLGVDALRVIDGSTFNYSPGTNPQATVMMLGRYMGVK ILSERLAN" CDS complement(join(31603905..31603947,31604158..31604723, 31604896..31605287,31605375..31605676,31605893..31606232, 31607189..31607270)) /locus_tag="TCM_016166" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015068t1" /codon_start=1 /product="Glucose-methanol-choline oxidoreductase family protein isoform 1" /protein_id="EOY24607.1" /db_xref="Phytozome:POPTR_0001s08620.1" /db_xref="TAIR:AT1G12570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYV8" /translation="MSLGWWKLVGAALAGILFFHGFSASEKAPNYSFMHNATSAPSLS YYDYIIVGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNISNMASFGAALSDVSPSS PSQRFISEDGVINARARVLGGGSCLNAGFYTRAGTEYVRQAGWDGRLVNESYQWVEKL VAFEPPMGQWQSAVRDGLIEAGVLPFNGFTYDHIFGTKVGGTIFDQQGNRHTAADLLE YATPSGLTVLLHASVHKILFAIKGNRRPKAHGVIFRDASGAKHKAYLKKGSKNEIIVS AGALGSPQLLMLSGVGPTAHLKAHNITVVLDQPLVGQGMSDNPMNAVFVPSPLPVEVS LIQVVGITHFGSYIEAASGENFAGGAASSRDYRMFSPKIGQLSTVPPKPRSPEAIAKA VEYSSNQDKPAFRGGFILEKIMGPISTGHLELRTRNLNDNPSVTFNYFKDPQDLQRCV QGIQTIQKIVESKPFSKFRFDYMSWPILLNMTASAPLNLLPKHYNPSMPLEVYCKDTV MTIWHYHGGCQVGRVVDLDYKVLGVDALRVIDGSTFNYSPGTNPQATVMMLGRYMGVK ILSERLAN" CDS complement(join(31603905..31603947,31604158..31604723, 31604896..31605287,31605375..31605676,31605893..31606232, 31607189..31607270)) /locus_tag="TCM_016166" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG015068t1" /codon_start=1 /product="Glucose-methanol-choline oxidoreductase family protein isoform 1" /protein_id="EOY24608.1" /db_xref="Phytozome:POPTR_0001s08620.1" /db_xref="TAIR:AT1G12570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYV8" /translation="MSLGWWKLVGAALAGILFFHGFSASEKAPNYSFMHNATSAPSLS YYDYIIVGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNISNMASFGAALSDVSPSS PSQRFISEDGVINARARVLGGGSCLNAGFYTRAGTEYVRQAGWDGRLVNESYQWVEKL VAFEPPMGQWQSAVRDGLIEAGVLPFNGFTYDHIFGTKVGGTIFDQQGNRHTAADLLE YATPSGLTVLLHASVHKILFAIKGNRRPKAHGVIFRDASGAKHKAYLKKGSKNEIIVS AGALGSPQLLMLSGVGPTAHLKAHNITVVLDQPLVGQGMSDNPMNAVFVPSPLPVEVS LIQVVGITHFGSYIEAASGENFAGGAASSRDYRMFSPKIGQLSTVPPKPRSPEAIAKA VEYSSNQDKPAFRGGFILEKIMGPISTGHLELRTRNLNDNPSVTFNYFKDPQDLQRCV QGIQTIQKIVESKPFSKFRFDYMSWPILLNMTASAPLNLLPKHYNPSMPLEVYCKDTV MTIWHYHGGCQVGRVVDLDYKVLGVDALRVIDGSTFNYSPGTNPQATVMMLGRYMGVK ILSERLAN" mobile_element complement(31607985..31608045) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5681 5742" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31609168..31616772) /locus_tag="TCM_016167" /note="dbxref CacaoGD:Thecc1EG016167" mRNA complement(join(31609168..31609681,31609974..31610107, 31610229..31610419,31611125..31611306,31611522..31611823, 31612176..31612630,31612742..31612846,31613038..31613349, 31614065..31614185,31614672..31614734,31616207..31616772)) /locus_tag="TCM_016167" /product="Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005442t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019870001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07107t00001" mRNA complement(join(31609212..31609681,31609974..31610110, 31610229..31610419,31611125..31611306,31611522..31611823, 31612176..31612630,31612742..31612846,31613038..31613349, 31614065..31614185,31614672..31614734,31616207..31616646)) /locus_tag="TCM_016167" /product="Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005442t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019870001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10370t1; inference alignment:Newbler:10:TSA:cgbaL_g07107t00001" CDS complement(join(31609443..31609681,31609974..31610107, 31610229..31610419,31611125..31611306,31611522..31611823, 31612176..31612630,31612742..31612846,31613038..31613349, 31614065..31614185,31614672..31614724)) /locus_tag="TCM_016167" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005442t1" /codon_start=1 /product="Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein isoform 1" /protein_id="EOY24609.1" /db_xref="Phytozome:GSVIVT01019870001" /db_xref="TAIR:AT4G22990.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW54" /translation="MVAFGKKLKERQIQEWQGYYINYKLMKKRVKQYAHQIEVGTLDR RHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLTKLREQHDALEEQPEFSQIAELREA YRAVGQDLLKLLYFVEMNAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFK HVGLGAVVGAVSRNLHELQDRQGSYLSIYDPPALPLQDPVVDLIKAAVDRLSYSTNFL NFLAQHALIMQEELPAPTEEHIDEERYHFMSLLLNLANTFLYMVNTYIIVPTADDYSM SLGAAATVCGVVIGAMAVAQVFSSVYFSAWSNRSYFRPLVFSSIVLFVGNTMYALAYD MNSLVVLLLGRLFCGLGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALA GILQTNFKIYKLTFNQDTLPGWVMAAAWLVYLIWLWISFKEPSHDVEERPSPHASNSE PAENDALEKGLKQPLLITSEDKQEDDEDQEGDGSEEASEESRQPATSIASAYRLLTPS VKVQLLIYFMLKYAMEILLSESSVITTYYFSWSTGTVAIFLACLGLTVLPVNIVVGSY ISNMFEDRQILLASEIMVCVGILLSFHVILPYTVPQYVCSGLITFVFAEVLEGVNLSL LSRVMSSRLSRGTYNGGLLSTEAGTIARVIADATITLAGYLGESKLLNITLLPSLIIC LSSIVATCFTYNSLY" CDS complement(join(31609443..31609681,31609974..31610110, 31610229..31610419,31611125..31611306,31611522..31611823, 31612176..31612630,31612742..31612846,31613038..31613349, 31614065..31614185,31614672..31614724)) /locus_tag="TCM_016167" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005442t1" /codon_start=1 /product="Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein isoform 2" /protein_id="EOY24610.1" /db_xref="Phytozome:GSVIVT01019870001" /db_xref="TAIR:AT4G22990.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW54" /translation="MVAFGKKLKERQIQEWQGYYINYKLMKKRVKQYAHQIEVGTLDR RHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLTKLREQHDALEEQPEFSQIAELREA YRAVGQDLLKLLYFVEMNAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFK HVGLGAVVGAVSRNLHELQDRQGSYLSIYDPPALPLQDPVVDLIKAAVDRLSYSTNFL NFLAQHALIMQEELPAPTEEHIDEERYHFMSLLLNLANTFLYMVNTYIIVPTADDYSM SLGAAATVCGVVIGAMAVAQVFSSVYFSAWSNRSYFRPLVFSSIVLFVGNTMYALAYD MNSLVVLLLGRLFCGLGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALA GILQTNFKIYKLTFNQDTLPGWVMAAAWLVYLIWLWISFKEPSHDVEERPSPHASNSE PAENDALEKGLKQPLLITSEDKQEDDEDQEGDGSEEASEESRQPATSIASAYRLLTPS VKVQLLIYFMLKYAMEILLSESSVITTYYFSWSTGTVAIFLACLGLTVLPVNIVVGSY ISNMFEDSRQILLASEIMVCVGILLSFHVILPYTVPQYVCSGLITFVFAEVLEGVNLS LLSRVMSSRLSRGTYNGGLLSTEAGTIARVIADATITLAGYLGESKLLNITLLPSLII CLSSIVATCFTYNSLY" mRNA complement(join(31609658..31609681,31609974..31610419, 31611125..31611306,31611522..31611823,31612176..31612630, 31612742..31612846,31613038..31613349,31614065..31614185, 31614672..31614734,31616207..31616661)) /locus_tag="TCM_016167" /product="Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005442t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019870001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc754t2; inference alignment:Newbler:10:TSA:cgbaL_g07107t00001" CDS complement(join(31610192..31610419,31611125..31611306, 31611522..31611823,31612176..31612630,31612742..31612846, 31613038..31613349,31614065..31614185,31614672..31614724)) /locus_tag="TCM_016167" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005442t1" /codon_start=1 /product="Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein isoform 3" /protein_id="EOY24611.1" /db_xref="Phytozome:GSVIVT01019870001" /db_xref="TAIR:AT4G22990.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW54" /translation="MVAFGKKLKERQIQEWQGYYINYKLMKKRVKQYAHQIEVGTLDR RHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLTKLREQHDALEEQPEFSQIAELREA YRAVGQDLLKLLYFVEMNAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFK HVGLGAVVGAVSRNLHELQDRQGSYLSIYDPPALPLQDPVVDLIKAAVDRLSYSTNFL NFLAQHALIMQEELPAPTEEHIDEERYHFMSLLLNLANTFLYMVNTYIIVPTADDYSM SLGAAATVCGVVIGAMAVAQVFSSVYFSAWSNRSYFRPLVFSSIVLFVGNTMYALAYD MNSLVVLLLGRLFCGLGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALA GILQTNFKIYKLTFNQDTLPGWVMAAAWLVYLIWLWISFKEPSHDVEERPSPHASNSE PAENDALEKGLKQPLLITSEDKQEDDEDQEGDGSEEASEESRQPATSIASAYRLLTPS VKVQLLIYFMLKYAMEILLSESSVITTYYFSWSTGTVAIFLACLGLTVLPVNIVVGSY ISNMFEDRSSLKSPHTFNF" gene complement(31623992..31639705) /locus_tag="TCM_016168" /note="dbxref CacaoGD:Thecc1EG016168" mRNA complement(join(31623992..31625046,31625673..31625784, 31627169..31627434,31628242..31628379,31628478..31628651, 31628757..31629016,31629700..31629851,31631079..31631197, 31631283..31631349,31631446..31631615,31632545..31634497, 31634586..31634681,31634769..31634924,31635699..31635923, 31635998..31636051,31636408..31636532,31636632..31636752, 31637266..31637394,31639267..31639705)) /locus_tag="TCM_016168" /product="DNA-directed RNA polymerase II subunit RPB1-B, putative" /inference="alignment:exonerate-protein:2:frave:gene32373" /inference="similar to AA sequence:Phytozome:GSVIVT01019869001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10327t2" CDS complement(join(31624876..31625046,31625673..31625784, 31627169..31627434,31628242..31628379,31628478..31628651, 31628757..31629016,31629700..31629851,31631079..31631197, 31631283..31631349,31631446..31631615,31632545..31634497, 31634586..31634681,31634769..31634924,31635699..31635923, 31635998..31636051,31636408..31636532,31636632..31636752, 31637266..31637361)) /locus_tag="TCM_016168" /codon_start=1 /product="DNA-directed RNA polymerase II subunit RPB1-B, putative" /protein_id="EOY24612.1" /db_xref="Phytozome:GSVIVT01019869001" /db_xref="TAIR:AT1G63020.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUI3" /translation="MTSMENDLYEAEQLPAAFVTGIRFNVSNDRDNEKMSVMEIAAPS EVSDPKLGFPNFSNHCTTCGAADMKHCEGHFGVINFPYAILHPYFLSEVVQILNKICP GCKSVRKDLRIKGANSVSKVNQRKGCKYCVGNSIDWYPPMNFKISSKDLFRKSAIIVE VSEKSSMKVRKRGKQALPSDYWDFIPKDEQQEESLIRPNRRVLSHSQVRYLLKDVDPE FIKKFVLSMDSIFLNCFPVTPNSHRVTEIMHASSNGQRLIFDQRTRVYKKLADFRGIA NELSSHVLECLKISKLHLEKPSNEESALVLAQKRNKDSASNMSGLRYMKDVILGKRND HCFRMVLTGNPNLKLSEISIPCHVAERLQIAEQLNNWNEERLKACCDLRLLEKGEIHV RREGRLVRIRHNEKLQVGDTIFRPLNNGDIILINRPPSIHQHSLIALSVKVLPVSSVV SINPLICSPFRGDFDGDCLHGYVPQSIKARVELIELVSLNRQLINGQSGRNLLSLSHD SLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPFPAIVKAPLLRSSVWTGKQLLSMLFP LEFDYDFTPNDVVIRNGELISSSEGSTWLRDADGNLFQSLIKHYQGKVLDFLYAAQEV LCEWLSMRGLSVSLSDLYLSSDSNSQKNMMDEIFCGLQEIEQTCNFKQLMVDSNHDFL VGHDEEVDSFMALDVEQMCYEKQRSAALSQASVDSFKQVFRDIQNLLYKYANKDNSLL TMFKAGSKGNLLKLVQHSLCLGLQHSLVPLSFRFPHQLSCAAWNNQKSHGLTQKVDDT AESAKNYIPYAVVESSFMTGLNPLESFVHSVTSRDSSFSDNADLPGTLSRRLMFFMRD LYTAYDGTVRNSYGDLVVQFCYDIDKDASSPTSCAHGLISESSTIPEGIGGQPVGSLS ACAISEAAYSALDQPVSLLETSPLLNLKRVVECGSKRSNADQTMTLFLSNKLGRKRHG SEYAALEVKNHLERLTFSDIVTTVSIIFSPQMYRENHFTPWVCHFHVCKDTMKRRQLK VQSIIDSLHMHCTTAKTMWKISLPDMQITSNGRACSHIDMPNEDDTFCITVTIVEYSK SSHMELDVIRDMVIPYLLEAVIKGFPEIKKVDILWKDRLKVSKPHKSSCGELYLRVFV SGDFGITKLWGVLMNDCLQIMDMIDWTRSHPDNINQLCLAYGIDAGWKFFLNNLKSAI SDTGKTILNEHLLVVANCLSATGEFVGLNSKGLRQQREHAYVSSPFMQACFSNPSASF VKAAKTGASDDLQGTIDALAWGRIPHIGTGGQFDIIYSVKDQRLAEPVDVYKLLGSSI SSQKQDVEFEVPKALNFKSEKYGSLLIDALGDSASEELKKIETKRRSIWRELLTLDDI QRLSRALRNILHKYPIDHRLSEADWNTLMMALYFHPRRDEKIGSGAQEIKVGYHPEHA NARCFSLVRTDGTIVDFSYHKCVLGALEIIAPHRAKSYKSKWLQSGSL" mobile_element complement(31625423..31625461) /note="source:scaffold_5_CACTA_0608 8761 8856" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31625462..31625526) /note="source:CACAO_M_E44848_F172_scaffold_6 1911 1974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31625479..31625551 /note="source:scaffold_6_CACTA_0712 1314 1393" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31626267..31626404) /note="source:CACAO_M_E23991_F4_scaffold_4 2473 2624" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31640224..31640236) /note="source:CACAO_M_E57763_F96_scaffold_9 743 752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31640237..31640306) /note="source:CACAO_M_E69306_F123_scaffold_9 4973 5041" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 31640247..31640310 /note="source:CACAO_Mariner_E25_scaffold_1 3172 3235" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(31640311..31640368) /note="source:CACAO_M_E57763_F96_scaffold_9 698 742" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 31644347..31648224 /locus_tag="TCM_016169" /note="dbxref CacaoGD:Thecc1EG016169" mRNA join(31644347..31644534,31645034..31645182, 31645337..31645939,31646040..31646336,31646891..31647307, 31647496..31648224) /locus_tag="TCM_016169" /product="Phosphoenolpyruvate carboxylase-related kinase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015078t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019868001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3509t2_C2" mRNA join(31644422..31644534,31645034..31645939, 31646040..31646336,31646891..31647307,31647496..31648188) /locus_tag="TCM_016169" /product="Phosphoenolpyruvate carboxylase-related kinase 1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015078t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019868001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10353t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3509t2_C2" CDS join(31645092..31645182,31645337..31645939, 31646040..31646336,31646891..31647307,31647496..31647761) /locus_tag="TCM_016169" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015078t1" /codon_start=1 /product="Phosphoenolpyruvate carboxylase-related kinase 1 isoform 1" /protein_id="EOY24613.1" /db_xref="Phytozome:GSVIVT01019868001" /db_xref="TAIR:AT1G12580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HP71" /translation="MKGVNKAISDKSLTVYHEKLMLEVDSLYGFVALIGMEIVTSNNI SLPSIQFCNCYKVASLAKTIMDTTQISNLRDQYVLGGQLGWGQFGVIRACSDKLTGEV LACKSIAKDRLVTPDDFCSIKLEIEIMTRLSGHPNVVDLKAVYEDEDFVHLVMELCAG GELFHRLEKYGSFSEFEARVLFKHLMEVVKYCHDNGIVHRDLKPENILLATKSSSSPI KLADFGLATYIKQGQSLHGTVGSPFYIAPEVLAGGYNQAADVWSAGVILYILLSGMPP FGGKTKSKIFDAVRAAELRFPTDPWDHISVSARDLITRMLCVDPSKRLTAAKVLAHPW VEDCREVAEEALKHDNLDCRELEVGGGSFAMPFVDRNQDYSFSDGSPVSANGQLGTPA FTCKSSFSSFLVENASPCSESVGFSFSSCCQSSAAEFSSTIPSMPSFTFFSPTAAVEP LKISLEAKAETSKMGKEYGESNLVKLFMLPDTSVAVKHKTGEVEQKTEIRRGGSNGSR LAGIHSKRNHTIGLGEFDHFDLVVTESVIRWASCTHIPTAPSLRLSLVC" CDS join(31645351..31645939,31646040..31646336, 31646891..31647307,31647496..31647761) /locus_tag="TCM_016169" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015078t1" /codon_start=1 /product="Phosphoenolpyruvate carboxylase-related kinase 1, putative isoform 2" /protein_id="EOY24614.1" /db_xref="Phytozome:GSVIVT01019868001" /db_xref="TAIR:AT1G12580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HP71" /translation="MEIVTSNNISLPSIQFCNCYKVASLAKTIMDTTQISNLRDQYVL GGQLGWGQFGVIRACSDKLTGEVLACKSIAKDRLVTPDDFCSIKLEIEIMTRLSGHPN VVDLKAVYEDEDFVHLVMELCAGGELFHRLEKYGSFSEFEARVLFKHLMEVVKYCHDN GIVHRDLKPENILLATKSSSSPIKLADFGLATYIKQGQSLHGTVGSPFYIAPEVLAGG YNQAADVWSAGVILYILLSGMPPFGGKTKSKIFDAVRAAELRFPTDPWDHISVSARDL ITRMLCVDPSKRLTAAKVLAHPWVEDCREVAEEALKHDNLDCRELEVGGGSFAMPFVD RNQDYSFSDGSPVSANGQLGTPAFTCKSSFSSFLVENASPCSESVGFSFSSCCQSSAA EFSSTIPSMPSFTFFSPTAAVEPLKISLEAKAETSKMGKEYGESNLVKLFMLPDTSVA VKHKTGEVEQKTEIRRGGSNGSRLAGIHSKRNHTIGLGEFDHFDLVVTESVIRWASCT HIPTAPSLRLSLVC" gene complement(31648715..31653719) /locus_tag="TCM_016170" /note="dbxref CacaoGD:Thecc1EG016170" mRNA complement(join(31648715..31649173,31650075..31650164, 31650326..31650451,31650556..31650653,31650894..31650947, 31651170..31651725,31652251..31652338,31652588..31652739, 31653508..31653710)) /locus_tag="TCM_016170" /product="Pleckstrin domain superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12090.1" /inference="similar to AA sequence:Phytozome:Glyma11g02910.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05049t00001; inference alignment:Newbler:10:TSA:cgbaP2_g05049t00001" mRNA complement(join(31648923..31648946,31649046..31649173, 31650047..31650164,31650326..31650451,31650556..31650653, 31650894..31650947,31651170..31651725,31652251..31652338, 31652588..31652739,31653508..31653719)) /locus_tag="TCM_016170" /product="Pleckstrin domain superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12090.1" /inference="similar to AA sequence:Phytozome:Glyma11g02910.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc680t1; inference alignment:Newbler:10:TSA:cgbaP2_g05049t00001" CDS complement(join(31649057..31649173,31650075..31650164, 31650326..31650451,31650556..31650653,31650894..31650947, 31651170..31651725,31652251..31652338,31652588..31652739, 31653508..31653567)) /locus_tag="TCM_016170" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pleckstrin domain superfamily protein isoform 1" /protein_id="EOY24615.1" /db_xref="Phytozome:Glyma11g02910.1" /db_xref="TAIR:AT4G11790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKP7" /translation="MKGAKRFALSGSVADTNDSAFRNKRIMAGSLFDAQRAEPSQQQS TATPPLDPQQAELSRQHVKALNTQFASWVQSQLKNHPDELWEDGVQDYLTHASNIMEK FSDVVDWLKAYAVNSDSLSVPESQKSGSKVVPETKNTENKFFQVKTGFTPSSTTTGFS LGTTTPSFSLGTTTMSFSPGTTTVSFAPGTTTTSPTPADMNKIFSPVYTSASFTSASS TTSFTPAGMTTSFMAGGSNSSFTFGSTATSSTSASPATIFTSSGMTTSFTAPRSSGVF SNSQTPVLFGSQSSVAVNNNASDDADDENELPQPSSPSVKKSEEKGIVVVHEVKCKLY VKSTDPAEKDSWKDKGTGQLSIKCKEGISKGSADSKPTIVVRNDVGKVLLNALLYPGI KTSAQKNSLVAIFHTSDDGGNNDKVVARTFLIRTKSEEDRNKLATAIQEYAPAS" mRNA complement(join(31649127..31649173,31650075..31650164, 31650326..31650451,31650556..31650653,31650747..31650947, 31651170..31651725,31652251..31652338,31652588..31652739, 31653508..31653605)) /locus_tag="TCM_016170" /product="Pleckstrin domain superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12090.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08680.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc449t4; inference alignment:Newbler:10:TSA:cgbaP2_g05049t00001" CDS complement(join(31649169..31649173,31650047..31650164, 31650326..31650451,31650556..31650653,31650894..31650947, 31651170..31651725,31652251..31652338,31652588..31652739, 31653508..31653567)) /locus_tag="TCM_016170" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pleckstrin domain superfamily protein isoform 2" /protein_id="EOY24616.1" /db_xref="Phytozome:Glyma11g02910.1" /db_xref="TAIR:AT4G11790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKP7" /translation="MKGAKRFALSGSVADTNDSAFRNKRIMAGSLFDAQRAEPSQQQS TATPPLDPQQAELSRQHVKALNTQFASWVQSQLKNHPDELWEDGVQDYLTHASNIMEK FSDVVDWLKAYAVNSDSLSVPESQKSGSKVVPETKNTENKFFQVKTGFTPSSTTTGFS LGTTTPSFSLGTTTMSFSPGTTTVSFAPGTTTTSPTPADMNKIFSPVYTSASFTSASS TTSFTPAGMTTSFMAGGSNSSFTFGSTATSSTSASPATIFTSSGMTTSFTAPRSSGVF SNSQTPVLFGSQSSVAVNNNASDDADDENELPQPSSPSVKKSEEKGIVVVHEVKCKLY VKSTDPAEKDSWKDKGTGQLSIKCKEGISKGSADSKPTIVVRNDVGKVLLNALLYPGI KTSAQKNSLVAIFHTSVIYLEAKYLG" CDS complement(join(31650835..31650947,31651170..31651725, 31652251..31652338,31652588..31652739,31653508..31653567)) /locus_tag="TCM_016170" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pleckstrin domain superfamily protein isoform 3" /protein_id="EOY24617.1" /db_xref="Phytozome:POPTR_0001s08680.1" /db_xref="TAIR:AT4G11790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUI1" /translation="MKGAKRFALSGSVADTNDSAFRNKRIMAGSLFDAQRAEPSQQQS TATPPLDPQQAELSRQHVKALNTQFASWVQSQLKNHPDELWEDGVQDYLTHASNIMEK FSDVVDWLKAYAVNSDSLSVPESQKSGSKVVPETKNTENKFFQVKTGFTPSSTTTGFS LGTTTPSFSLGTTTMSFSPGTTTVSFAPGTTTTSPTPADMNKIFSPVYTSASFTSASS TTSFTPAGMTTSFMAGGSNSSFTFGSTATSSTSASPATIFTSSGMTTSFTAPRSSGVF SNSQTPVLFGSQSSVAVNNNASDDADDGGKMKLYPLILIYYIFFLF" gene complement(31654302..31657861) /locus_tag="TCM_016171" /note="dbxref CacaoGD:Thecc1EG016171" mRNA complement(join(31654302..31654824,31654936..31655046, 31655727..31655828,31655936..31656178,31656396..31656597, 31656719..31656747,31657208..31657840)) /locus_tag="TCM_016171" /product="UDP-N-acetylglucosamine (UAA) transporter family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019865001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005436t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08690.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10365t1; inference alignment:Newbler:10:TSA:cgbaL_g13622t00001" mRNA complement(join(31654414..31654824,31654936..31655043, 31655727..31655828,31655936..31656178,31656396..31656597, 31656719..31656747,31657208..31657405,31657487..31657861)) /locus_tag="TCM_016171" /product="UDP-N-acetylglucosamine (UAA) transporter family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019865001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005436t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08690.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13622t00001" CDS complement(join(31654576..31654824,31654936..31655043, 31655727..31655828,31655936..31656178,31656396..31656597, 31656719..31656747,31657208..31657333)) /locus_tag="TCM_016171" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005436t1" /codon_start=1 /product="UDP-N-acetylglucosamine (UAA) transporter family isoform 1" /protein_id="EOY24618.1" /db_xref="Phytozome:POPTR_0001s08690.2" /db_xref="TAIR:AT1G12600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDX3" /translation="MKSEDQARSLFGISLTDRPKWQQFLICSSGFFFGYLVNGVCEEY VYNRLQFSYGWYFTFVQGFVYLILIRLQGFTIKQMVNPWQTYVKLSAVLMGSHGLTKG SLAYLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPFHEYISALLLVVGLILFTLADA QTSPNFSIIGIIMISGALIMDAFLGNFQEAIFAMNPETTQMEMLFCSTVVGIPFLLVP MILTGELVTAWNSCSQHPYVYGVLVFEAMATFIGQVSVLSLIAIFGAATTAMITTARK AVTLLLSYMIFTKPLTEQHGSGLLLIAMGIILKMLPDSKPVPRIPISNVNAMHPKTSS QEAESVEFEEDEETKPLV" CDS complement(join(31654576..31654824,31654936..31655046, 31655727..31655828,31655936..31656178,31656396..31656597, 31656719..31656747,31657208..31657333)) /locus_tag="TCM_016171" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005436t1" /codon_start=1 /product="UDP-N-acetylglucosamine (UAA) transporter family isoform 2" /protein_id="EOY24619.1" /db_xref="Phytozome:POPTR_0001s08690.2" /db_xref="TAIR:AT1G12600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDX3" /translation="MKSEDQARSLFGISLTDRPKWQQFLICSSGFFFGYLVNGVCEEY VYNRLQFSYGWYFTFVQGFVYLILIRLQGFTIKQMVNPWQTYVKLSAVLMGSHGLTKG SLAYLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPFHEYISALLLVVGLILFTLADA QTSPNFSIIGIIMISGALIMDAFLGNFQEAIFAMNPETTQMEMLFCSTVVGIPFLLVP MILTGELVTAWNSCSQQHPYVYGVLVFEAMATFIGQVSVLSLIAIFGAATTAMITTAR KAVTLLLSYMIFTKPLTEQHGSGLLLIAMGIILKMLPDSKPVPRIPISNVNAMHPKTS SQEAESVEFEEDEETKPLV" mobile_element complement(31658146..31658928) /note="source:scaffold_9_CACTA_0934 14080 14879" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31658431..31659434 /note="source:scaffold_5_CACTA_0607 3860 4845" /mobile_element_type="transposon:TIR/CACTA" gene complement(31661596..31665427) /locus_tag="TCM_016173" /note="dbxref CacaoGD:Thecc1EG016173" mRNA complement(join(31661596..31662460,31662562..31662685, 31664168..31665427)) /locus_tag="TCM_016173" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08700.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s12110.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04287t00001" CDS complement(join(31661889..31662460,31662562..31662685, 31664168..31664938)) /locus_tag="TCM_016173" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24620.1" /db_xref="Phytozome:POPTR_0003s12110.1" /db_xref="TAIR:AT4G23020.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKP5" /translation="MAMINIPTDHIKLRKTLLIEKKPLMLKDYLRDDLSSCSSSGFKS FPRRQCCTTVRFLLEADLKKTKDCSSIAKRHLKRSCSKPASTNISTLQRASEAVLNAV KLLPFASFKSSSPSLQSNSSRKGLLPRSFSRKLFKRRFWRKAEKEDGEIRRWRLFREF LEEKNQPADQNNIANVNTTDTFSSIITTSRVSTSTSSNRNSWPESEFTADILQSSSRN SESLSENDVVDGKTNLPEIKRVSNVTGVTVGEDSINYTKEQDWRNEDGKEQFSPVSVL DCPFDDEEDNGSPFKDQLARVEGTKQKLMQRIIGFENLAQLAPVDLEKRIAFSELEDE SLESPKEPCSVSVDNNGNISDEVKQEKDKEGNGKLLMLLKAKIPSDSSKFKADNLLLD FFRERMVEDNNAEKHAKMGLEEFVLDLLKVAEDWVNGNPQELLLGWEVQDGRKAYVKE MERNENWRNFYVEKEKVGSEVELEIFSLLVDELLTDLF" mobile_element 31667755..31668554 /note="source:CACAO_hAT_E2547_scaffold_5 8 857" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31668473..31668564) /note="source:CACAO_on_E216_scaffold_4 29 128" /mobile_element_type="transposon:TIR/hAT" mobile_element 31668565..31668589 /note="source:CACAO_MITE_S2_scaffold_1 606 728" /mobile_element_type="transposon:TIR/MITE" gene 31668590..31670500 /locus_tag="TCM_016174" /note="dbxref CacaoGD:Thecc1EG016174" mRNA join(31668590..31668632,31669622..31670500) /locus_tag="TCM_016174" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.86 coverage" mobile_element 31669379..31669460 /note="source:scaffold_9_CACTA_0942 5596 5676" /mobile_element_type="transposon:TIR/CACTA" CDS 31669741..31670298 /locus_tag="TCM_016174" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24621.1" /translation="MNKNAGNIFVWLLILVVYEASLCAAKCKKPEELPLHEIYITNSM PHEAPVRCFRYDLTDNYLGNKWLKPREETKFQFRYELLPETTYYCTTTNGSFAAYRQS YDCAQNKVNLCEWRVHETYAELYSLIQQRWVHFDYEPVKNPTCYKDLCLRFPRGYPSH KAPCHKESSKASVPEQNALYDLSPK" gene complement(31671045..31672529) /locus_tag="TCM_016175" /note="dbxref CacaoGD:Thecc1EG016175" mRNA complement(31671045..31672529) /locus_tag="TCM_016175" /product="AP2/ERF domain-containing transcription factor, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011120" /inference="similar to AA sequence:ricco:30190.m011120" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc267t1" CDS complement(31671385..31672110) /locus_tag="TCM_016175" /note="dbxref ricco:30190.m011120" /codon_start=1 /product="AP2/ERF domain-containing transcription factor, putative" /protein_id="EOY24622.1" /db_xref="TAIR:AT4G25470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PL45" /translation="MDISSQFSDLFSCRSYSMPADRVEPSSSSEAGTVRRAVHSDEEV LVLATSRPKKRAGRRIFKETRHPIFRGVRRRNKDKWVCELREPNKKTRIWLGTYPTPE MAARAHDVAALAFRGKAACLNFADSAWRLPVPASNDAVDIRRAAAEAAEAFGPQELDV LSSSDAKQESVKASDGEVSSSTGNLGNSKIVSEKVHFLDEEAMFDMPKLLVSMAEGLL LSPPRNWDDSDSDIDVSLWSYSI" gene complement(31679643..31680714) /locus_tag="TCM_016176" /note="dbxref CacaoGD:Thecc1EG016176" mRNA complement(31679643..31680714) /locus_tag="TCM_016176" /product="Integrase-type DNA-binding superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015083t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s12120.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc6054t1" CDS complement(31679945..31680640) /locus_tag="TCM_016176" /note="paralog of Thecc1EG015083t1" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein" /protein_id="EOY24623.1" /db_xref="Phytozome:POPTR_0003s12120.1" /db_xref="TAIR:AT5G52020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC20" /translation="MADPNNPTNVPQLDQPYSHSPVPSSSLQDPNIQVPHPLPTNTHT CDSPSPTCDKLPPTAPKSNMASSSSGKHPMYRGIRCRSGKWVSEIREPRKTTRIWLGT YPTPEMAAAAYDVAALALKGGEAVVNFPGSVASYPLPASTSSADIRKAAAAAALLKKA ETTSEINLGTGHQAKNEEMTTQEYVDEDALLNLPNLLVDMAEGLLVSPPRISSTPSDD SPENSDGESLWSY" gene 31683620..31686511 /locus_tag="TCM_016177" /note="dbxref CacaoGD:Thecc1EG016177" mRNA join(31683620..31684141,31684240..31684520, 31685148..31685777,31685903..31686511) /locus_tag="TCM_016177" /product="Sugar transporter 1" /inference="alignment:exonerate- protein:2:ricco:57123.m000007" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016178t1" /inference="similar to AA sequence:ricco:30190.m011122" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc4810t1" CDS join(31684009..31684141,31684240..31684520, 31685148..31685777,31685903..31686367) /locus_tag="TCM_016177" /note="dbxref ricco:30190.m011122; paralog of Thecc1EG016178t1" /codon_start=1 /product="Sugar transporter 1" /protein_id="EOY24624.1" /db_xref="TAIR:AT1G11260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P23586" /translation="MAGGGMPSAGSVKNYPGNFTSKVLSTCIIAATGGLIFGYDLGIS GGVTSMDPFLEKFFPEVYKKEISTKPSDDQYCKFDSQVLTLFTSSLYLAALFSATVAA KITRACGRKMTMMFGGLLFAGGAVLNGFAENIAMLISVPIYLSEIAPFKYRGAMNIMF QMSITIGIFVANLLNYFSAKIKAGWGWRLSLGGAVVPGLIIFFSSFFLSDTPNSLLER DKFDEARVLLKEIRGVDNVDEEFNDLCAASEASKLVKSPWRDISKRKYRPQLSFAVLI PFCQQFTGMNVFVFYAPVLFKSMGFGNNASLMSSVITSIINALATVVSIICVDKFGRR TLFLEGGLQMLLCQIVMTGLIAYKFGTSGNPGELPMWFSILVVAFMCIYIAAYAWSWG PLGWLVPSEIFPLEVRSAAQCITVSVNMFCTFVLAQIFTAMLCQLKFGFFIFFACCVV AMSIFIYMFLPETKGVPIEEMTIVWKKHPYWRKFLPTDEDQDCEMAKKGRSL" gene 31686649..31694012 /locus_tag="TCM_016178" /note="dbxref CacaoGD:Thecc1EG016178" mRNA join(31686649..31686844,31687279..31687502, 31690694..31690951,31691092..31691417,31692536..31693165, 31693270..31694012) /locus_tag="TCM_016178" /product="Sugar transporter 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016177t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08750.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3091t1" CDS join(31690819..31690951,31691092..31691417, 31692536..31693165,31693270..31693731) /locus_tag="TCM_016178" /note="paralog of Thecc1EG016177t1" /codon_start=1 /product="Sugar transporter 1" /protein_id="EOY24625.1" /db_xref="Phytozome:POPTR_0001s08750.1" /db_xref="TAIR:AT1G11260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P23586" /translation="MAGGVIAPAGSGKEYPGSFTSKVFFTCVIAASGGLIFGYDLGIS GGVTSMNPFLEKFFPDVYNKEISIKPSDDQYCKFDSQKLTFFTSSLYLAALLSSLVAS TVTRLFGRKMTMMTGGLLFTIGALLNGFAQNIEMLYIGRILLGFGVGAANQSVPIYLS EMAPFRYRGALNIMFQITITFGIFVANLLNYFFAKIEGGWGWRLSLGGAVVPGLIIFL GSFCLSDTPNSLIERGELDEARVLLKKIRGIDNVDEELNDLVEASEASRLVKHPWRDI FRRKYRPQLTFSIFIPSFQQLTGVNVFVFYAPVLFKSMGFGDNASLMSSMITGLCICI AAVISSFTADKFGRRTLFLQGGIQMFICQAVMTVAIAAKFGTSGNPGDLPMWYSILVV LAMCIYIAGFGWSWGPLGWLVPSEIFPLEIRSAAQSINVSVNMIFTFAVAQAFTAMLC HLKFGLFIFFACCVVVMSVFIYKLFPETKGVPIEEMTIIWKNHPYWRKFVNDEDPNYE MAKRGGSV" gene complement(31696004..31696477) /locus_tag="TCM_016179" /note="dbxref CacaoGD:Thecc1EG016179" mRNA complement(31696004..31696477) /locus_tag="TCM_016179" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(31696068..31696340) /locus_tag="TCM_016179" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24626.1" /translation="MRVGLTTLALRFCLEAGGRLDVDDAMSQWHETFKPKSPMAGPSN QMHRSTHSTWTVARARGLPMGNLRARLFFVLTVIVVFVFGGQHLPL" gene 31697088..31699615 /locus_tag="TCM_016180" /note="dbxref CacaoGD:Thecc1EG016180" mRNA 31697088..31699615 /locus_tag="TCM_016180" /product="MATE efflux family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015091t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s12140.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10347t1" CDS 31697538..31699073 /locus_tag="TCM_016180" /note="paralog of Thecc1EG015091t1" /codon_start=1 /product="MATE efflux family protein" /protein_id="EOY24627.1" /db_xref="Phytozome:POPTR_0003s12140.1" /db_xref="TAIR:AT4G23030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CNU9" /translation="MLTPLNPKNPTAQKGDQDSEKTCLSLVVKEAKCIASIAFPMVLT GILLYSRSMISMLFLGRLGELALAGGSLAIGFANITGYSVLSGLAMGMEPICGQAFGA KRYKLLGLTMQRMILLLLLTSIFIASLWFNMKNILLFCGQDENIANEAQSYILYSLPD LLAQSILHPLRTYLRTQSITLPLTYCSALAILLHIPVNYLLVSVLNLGIKGVALGSIW TNFNLVGSLIVYVKISGVYKKTWGGISSECLKGWKYLLNLSIPSCISVCLEWWWYEIM ILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANNPNKAKLAA IVGLSSSSVIGLSALAFAILVRKKWATMFTEDPEIIALTSMVLPILGLCELGNCPQTT GCGVLRGTARPKSGANINLGCFYLVGMPIAVWLSFLAGFDFKGLWLGLLAAQASCVVT MLFVVACTDWDLQARRAQELTRAVPVDDDDQTNRDGALKVDSDSKESSGLLYDAHPNN LPV" gene 31703922..31706345 /locus_tag="TCM_016181" /note="dbxref CacaoGD:Thecc1EG016181" mRNA join(31703922..31703934,31705466..31706345) /locus_tag="TCM_016181" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage" CDS 31705580..31705813 /locus_tag="TCM_016181" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24628.1" /translation="MGLSLEPAAMAADMETKKHELRVANQLKAPSRWSPCTFTLLALA AQRINVSVIMIFTVAVSQVFNALPFEFQLLMFG" gene 31706658..31710223 /locus_tag="TCM_016182" /note="dbxref CacaoGD:Thecc1EG016182" mRNA join(31706658..31706840,31706931..31707061, 31707149..31707215,31707327..31707380,31708159..31708211, 31708898..31708952,31709045..31709119,31709251..31709368, 31709640..31709686,31709776..31710223) /locus_tag="TCM_016182" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019856001" /inference="similar to AA sequence:Phytozome:GSVIVT01019856001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10400t4" CDS join(31706718..31706840,31706931..31707061, 31707149..31707215,31707327..31707380,31708159..31708211, 31708898..31708952,31709045..31709119,31709251..31709368, 31709640..31709686,31709776..31709886) /locus_tag="TCM_016182" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24629.1" /db_xref="Phytozome:GSVIVT01019856001" /db_xref="TAIR:AT1G12650.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC26" /translation="MKKPINSIATSSKTYFEKRGEEEEIESSEEEESDDYIDSDEEVE IEQELAEVTFEELQKARADGTESVSRKHHSENKHRRANKNRPVELSSKKPMRSFRQAI QAPKKVLWTASELNGVAIWDCRVVVRDPRFESLCGKLDAEGFRKRYNFLFENNLPAER EEAQKRLKKAKDPKVIGELKNSISWIDKQIKFESAKHTDAKILAEHKKKEREAAKLGK RPFYLKKSEIRKQRLIEKYKKLKASGKLESFIEKRRRKNAAKDHRFMPYRRPNNSEQQ G" gene 31710542..31716906 /locus_tag="TCM_016184" /note="dbxref CacaoGD:Thecc1EG016184" mRNA join(31710542..31710838,31711378..31711532, 31711679..31712653,31712873..31713004,31713289..31713337, 31713486..31713700,31713782..31713850,31714012..31714106, 31714970..31715063,31715154..31715223,31715603..31716906) /locus_tag="TCM_016184" /product="Transcriptional corepressor SEUSS, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025144.2" /inference="similar to AA sequence:Phytozome:GSVIVT01019855001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1900t3" CDS join(31711763..31712653,31712873..31713004, 31713289..31713337,31713486..31713700,31713782..31713850, 31714012..31714106,31714970..31715063,31715154..31715223, 31715603..31716417) /locus_tag="TCM_016184" /codon_start=1 /product="Transcriptional corepressor SEUSS, putative" /protein_id="EOY24630.1" /db_xref="Phytozome:GSVIVT01019855001" /db_xref="TAIR:AT5G62090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC27" /translation="MALDAFLDSNNSRAMPWVSRGLVQSSGSSNLLQKDEQCQNVVAS LLGRASRNLPSTNAGISDFNLDKCCTVVNSATNLTCTFRESEGISSVSEHPQLQRTSP TNIDSHVDIPKLPVLSSHDLSSSRTSVVDALSRGQHMSYMNGSQVGKRKQQPGILNAN SSNASQKPEDSFPHDIKQELHNSCLKKPRLDLNQDVILQEHIMKQPLESRDSVQLQGQ MGVLKAFLQQNKSLNEHKEKNLQSISQFKGVDLKQQGQQQMRHHLQQPGICQGPFVNP FDVVCSRRLMQYVYHLRHRPPENGIEYWRKFVEEYYAPNAKKRWCLSLYDNVRHHSSG VFPQAAMAQWHCNLCGSISGRGFEATSEVLPRLYKVSFESGVIDEILFLDLPCERKLP SGLMMLEYEKAVQESVYDQVRVVREGKLRIIFTYDLKILSWEFCARHHEELLHRSFIV AQVHGLVHAAQKYQSTINGSNKFSPRYLQEDCNRFLTTGGQLVSNLDLELIDDLGFSK RYIRCLQIAGVVESMKDLMTFSKDNNIGPVEGLKKYPQPTTFIKPLRGEGKEKLPLKS VQSLPTDCNKLLGISPHFNNNNNNNGSPKITRNPNLINSEEESPSRLSRLTTLTSNAS KWKEAHSRKCNRSKEGASTKPFQGRKISSLGLSQDIPVNDLSSYNFSECNKNNQECMI QKWLQKMISNSRAENEGAKEKVNREIGWTTPIGLQAEAKRTDKLVNGFDFDNMAEAAA SRNSSSTGGNMHKFSVSAACNGDSSSASGNDSFVKREPDLLEMVRIMGHDYYKNGNPA GDHHLGQGWKV" gene complement(31717533..31720626) /locus_tag="TCM_016185" /note="dbxref CacaoGD:Thecc1EG016185" mRNA complement(join(31717533..31718103,31719068..31719139, 31719343..31719461,31720081..31720626)) /locus_tag="TCM_016185" /product="Phloem protein 2-A12, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011129.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015102t1" /inference="similar to AA sequence:frave:gene32388" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01292t00001" CDS complement(join(31717665..31718103,31719068..31719139, 31719343..31719461,31720081..31720404)) /locus_tag="TCM_016185" /note="dbxref frave:gene32388; paralog of Thecc1EG015102t1" /codon_start=1 /product="Phloem protein 2-A12, putative" /protein_id="EOY24631.1" /db_xref="TAIR:AT1G12710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LN77" /translation="MGANFSALFIDQDGLASASSSSVSLGDLPESCVASIIGYLDPPE ICKLAKLNRAFRGASWADVVWESKLPPNYQILVDKILGFVPEKLGKRDIYTRLCRANT FDDGTKKVWLDKSTGGVCLLISSRGLRITGIDDRRYWNHIPTEESRAPFLMYDDDDDD DDDDDDAMLWQRFGSIAYLQQIWWFEVDGEVEFPFPAGTYSVFFRLQLGRASRRFGRQ IRNSENVHGWDIKPVRFQLWTSDGQHATSQCTLSDPGEWFHYHVGDFNVDNSNSSMKI KLSMMQIDCTHTKGGLCLDSVVIYPSKFRERLKHKGFLKCA" mobile_element complement(31719080..31719123) /note="source:scaffold_5_CACTA_0617 5040 5083" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31721558..31721733 /note="source:CACAO_PIF_E31_scaffold_2 4043 4220" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(31721591..31721957) /note="source:CACAO_on_E378_scaffold_1 522 904" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 31723854..31724503 /note="source:INTACT135F_F90_scaffold_2-int 12864 13514" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 31723856..31724734 /note="source:scaffold_9_CACTA_0932 2788 3612" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31725247..31726323 /note="source:MITE_hAT_9 1 1098" /mobile_element_type="transposon:TIR/MITE" gene complement(31728146..31731616) /locus_tag="TCM_016186" /note="dbxref CacaoGD:Thecc1EG016186" mRNA complement(join(31728146..31731237,31731474..31731616)) /locus_tag="TCM_016186" /product="GRAS family transcription factor" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s08850.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08850.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc13t1_C1" CDS complement(31728517..31730532) /locus_tag="TCM_016186" /codon_start=1 /product="GRAS family transcription factor" /protein_id="EOY24632.1" /db_xref="Phytozome:POPTR_0001s08850.1" /db_xref="TAIR:AT1G63100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKM9" /translation="MLAGCSSSTLLSPRHRLRSEASAQFQACHFQTSMSTQRLDLPCS FSRKDTSRSQPIRPVGLSVEKPIESKTTGCSLKQNIRLPPLTTTAQNPFEGRREIKDE FWEKGKSLKRFAEQGLVDESVINRAKRKKGSSDNEDSGDIHEGGGDNLSLGQLGAGNF WFQPSFTGQNAPQVPFSLTCSGDEERVCFVPSEVISPPLPLSNNPWIESVITEITDVG EKDVETIHRPANETSGSSTSSESHSLGLRLNEQATEQEVGNGSGNPYPHDGARLGANA EENNHGEHQGFELVHLLTACVEAIGSKNIAAINHFMAKLGDLASPRGSAISRLTAYYT EALALRVTRLWPHIFHITTPRELDRVDDDNGTALRLLNQVSPIPKFVHFTSNEILLRA FEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRVTGIGESKQELNETGDRLAG FAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCVFQLHKTLYDGNGGALRDFL GLLRSTNPAVVIVAEQEAEHNVLSIDARVTNSLRYYSAIFDSMDSSLPLESPIRIKIE EMFAREIRNIIACEGSDRFERHESFEKWRKLMEQGGFRCMGVSERELLQSQMLLKMYS CENYSVKKQGQDGAALTLSWLDQPLYSVSAWTPVDVAGSSSSFSQPS" mobile_element complement(31730933..31731154) /note="source:scaffold_5_CACTA_0602 4169 4386" /mobile_element_type="transposon:TIR/CACTA" gene complement(31732740..31737586) /locus_tag="TCM_016187" /note="dbxref CacaoGD:Thecc1EG016187" mRNA complement(join(31732740..31733300,31733434..31733490, 31733574..31733717,31734218..31734382,31734477..31734674, 31734832..31735042,31735161..31735276,31735355..31735438, 31735547..31736063,31736153..31736214,31736320..31736392, 31737220..31737586)) /locus_tag="TCM_016187" /product="Ubiquitin-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12230.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08840.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc668t6; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc668t6" mRNA complement(join(31732804..31733300,31733434..31733495, 31733574..31733717,31734218..31734382,31734477..31734674, 31734832..31735042,31735161..31735276,31735355..31735438, 31735547..31736063,31736153..31736214,31737220..31737437)) /locus_tag="TCM_016187" /product="Ubiquitin-like superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12230.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08840.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10545t3; inference alignment:Newbler:10:TSA:cgbaP2_g04661t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc668t6" mRNA complement(join(31732913..31733300,31733434..31733490, 31733574..31733717,31734218..31734382,31734477..31734674, 31734832..31735042,31735161..31735276,31735355..31735438, 31735547..31736063,31736153..31736214,31737220..31737235)) /locus_tag="TCM_016187" /product="Ubiquitin-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12230.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08840.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12744t00001; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc668t6; inference alignment:Newbler:10:TSA:cgbaP2_g04661t00001" CDS complement(join(31733193..31733300,31733434..31733490, 31733574..31733717,31734218..31734382,31734477..31734674, 31734832..31735042,31735161..31735276,31735355..31735438, 31735547..31736063,31736153..31736214,31737220..31737234)) /locus_tag="TCM_016187" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ubiquitin-like superfamily protein, putative isoform 2" /protein_id="EOY24634.1" /db_xref="Phytozome:POPTR_0001s08840.1" /db_xref="TAIR:AT4G11740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW72" /translation="MEKLEEHGGDLNAAVNAHFSEGDRNTMQQTSPVVPVDDAMDIDD PSDVVPNRPVLPSLSASRPISPFSHLDPNFQRSLLDGTSDFIIREPMITHPREVREVP IEVKDSNEPSGHSGDAPVIEDISETAQAHGPNTDEIAIINEMDEGSTVLPRQENDNSY DQHVTPSAPAFDNLPDYGNDIEEEMIRAAIEASKRDVEELSDPGPLRNQSHLEDAELA KAVSLSLRTAEQEKALREQGWPVGASDVEASKAAEVHPENMAASNGRLGEGSSSIQDE ADDVEEQPLVRHGSRQTSSSLGDSAKEVGVVEASPPSSPGQEGIGNHPPNNGNAFPSD EWGGISSEEHDEAVMLEAAMFGGIPESGYRYAYAPHQFMRPEGSYPWRTPRPPSPSLA AQRLIREQQDDEYNASLQADREKELKAIQEAEARLLEEEAARKAALEEEQRREEEFHR KIEEEQECERQLAAKEASLPQEPAADEENAVTLLVRMPDGSRRGRRFVKSDRLQSLYD FIDIGRGVKPGTYRLVRPYPRRAFGDGESSLTFNELGLTSKQEALFLELI" CDS complement(join(31733193..31733300,31733434..31733490, 31733574..31733717,31734218..31734382,31734477..31734674, 31734832..31735042,31735161..31735276,31735355..31735438, 31735547..31736063,31736153..31736214,31736320..31736343)) /locus_tag="TCM_016187" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ubiquitin-like superfamily protein, putative isoform 1" /protein_id="EOY24633.1" /db_xref="Phytozome:POPTR_0001s08840.1" /db_xref="TAIR:AT4G11740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW72" /translation="MSNLTSCWEHGGDLNAAVNAHFSEGDRNTMQQTSPVVPVDDAMD IDDPSDVVPNRPVLPSLSASRPISPFSHLDPNFQRSLLDGTSDFIIREPMITHPREVR EVPIEVKDSNEPSGHSGDAPVIEDISETAQAHGPNTDEIAIINEMDEGSTVLPRQEND NSYDQHVTPSAPAFDNLPDYGNDIEEEMIRAAIEASKRDVEELSDPGPLRNQSHLEDA ELAKAVSLSLRTAEQEKALREQGWPVGASDVEASKAAEVHPENMAASNGRLGEGSSSI QDEADDVEEQPLVRHGSRQTSSSLGDSAKEVGVVEASPPSSPGQEGIGNHPPNNGNAF PSDEWGGISSEEHDEAVMLEAAMFGGIPESGYRYAYAPHQFMRPEGSYPWRTPRPPSP SLAAQRLIREQQDDEYNASLQADREKELKAIQEAEARLLEEEAARKAALEEEQRREEE FHRKIEEEQECERQLAAKEASLPQEPAADEENAVTLLVRMPDGSRRGRRFVKSDRLQS LYDFIDIGRGVKPGTYRLVRPYPRRAFGDGESSLTFNELGLTSKQEALFLELI" CDS complement(join(31733297..31733300,31733434..31733495, 31733574..31733717,31734218..31734382,31734477..31734674, 31734832..31735042,31735161..31735276,31735355..31735438, 31735547..31736063,31736153..31736214,31737220..31737303)) /locus_tag="TCM_016187" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ubiquitin-like superfamily protein, putative isoform 3" /protein_id="EOY24635.1" /db_xref="Phytozome:POPTR_0001s08840.1" /db_xref="TAIR:AT4G11740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW72" /translation="MARPNQEAIETFMSITGAPEAVAMEKLEEHGGDLNAAVNAHFSE GDRNTMQQTSPVVPVDDAMDIDDPSDVVPNRPVLPSLSASRPISPFSHLDPNFQRSLL DGTSDFIIREPMITHPREVREVPIEVKDSNEPSGHSGDAPVIEDISETAQAHGPNTDE IAIINEMDEGSTVLPRQENDNSYDQHVTPSAPAFDNLPDYGNDIEEEMIRAAIEASKR DVEELSDPGPLRNQSHLEDAELAKAVSLSLRTAEQEKALREQGWPVGASDVEASKAAE VHPENMAASNGRLGEGSSSIQDEADDVEEQPLVRHGSRQTSSSLGDSAKEVGVVEASP PSSPGQEGIGNHPPNNGNAFPSDEWGGISSEEHDEAVMLEAAMFGGIPESGYRYAYAP HQFMRPEGSYPWRTPRPPSPSLAAQRLIREQQDDEYNASLQADREKELKAIQEAEARL LEEEAARKAALEEEQRREEEFHRKIEEEQECERQLAAKEASLPQEPAADEENAVTLLV RMPDGSRRGRRFVKSDRLQCSLCMTSLILVEESSQALIDW" gene 31737949..31750001 /locus_tag="TCM_016188" /note="dbxref CacaoGD:Thecc1EG016188" mRNA join(31737949..31738177,31747275..31747476, 31747594..31747915,31748015..31748164,31748396..31748647, 31748742..31748831,31748920..31748998,31749101..31749207, 31749324..31749451,31749556..31750001) /locus_tag="TCM_016188" /product="Cytochrome P450, family 87, subfamily A, polypeptide 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019818001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015108t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019818001" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10394t1" mobile_element 31738578..31738988 /note="source:scaffold_1_CACTA_0009 2222 2626" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31738986..31739480) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17254 17784" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31739960..31740013) /note="source:scaffold_5_CACTA_0591 3959 4012" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31739966..31740014) /note="source:CACAO_M_E42514_F40_scaffold_5 140 187" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31739981..31740059) /note="source:scaffold_2_CACTA_0262 17029 17089" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31742143..31743131 /note="source:INTACT639F_F363_scaffold_5-int 7472 8465" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31743433..31743500) /note="source:CACAO_PIF_E278_scaffold_9 4006 4280" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 31743501..31743874 /note="source:INTACT639F_F363_scaffold_5-int 8133 8465" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31743875..31743936) /note="source:CACAO_PIF_E278_scaffold_9 3745 4005" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(31744361..31744402) /note="source:CACAO_M_S_E89717_F345_scaffold_8 1169 1209" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(31747283..31747476,31747594..31747915, 31748015..31748164,31748396..31748647,31748742..31748831, 31748920..31748998,31749101..31749207,31749324..31749451, 31749556..31749679) /locus_tag="TCM_016188" /note="paralog of Thecc1EG015108t1" /codon_start=1 /product="Cytochrome P450, family 87, subfamily A, polypeptide 2" /protein_id="EOY24636.1" /db_xref="Phytozome:GSVIVT01019818001" /db_xref="TAIR:AT1G12740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LN73" /translation="MLALFIGALLVICITHWFYNWRNPRCNGKLPPGSMGFPLLGETL QFFGPSTTSDIHPFVKERMKRHGPIFKTSLVGRSVIVSTDPDLNHFVFLQEGQLFQSW YPDTFTEIFGRQNVGSLHGFMYKYLKNMVLNLFGPESLKKMLPEVERTACRRLQRWSS QETVELKEATASMIFDLTAKKLISYDQDNSSENLRENFVAFIQGLISFPLDIPGTAYH KCLQGRRNAMKMLKNLLNERRAMPGKNRSDFFDYVLEELQKEGTILSEAIALDLMFVL LFASFETTSLALTLAVKFLSDDPSVLKKLTEEHETILRNREDPDSGLTWKEYKSMTYT FQFINETVRLANIVPGIFRKALREIQFNGYTIPAGWAVMVCPPAVHLNAAKYRDPHAF NPSRWEGVETNGASKNFMAFGGGMRFCVGTDFTKVQMAVFLHCLVTKYRWQPIKGGNI LRTPGLQFPDGFHIQLMEKTRLMSSHVSLHG" gene complement(31749968..31757727) /locus_tag="TCM_016189" /note="dbxref CacaoGD:Thecc1EG016189" mRNA complement(join(31749968..31750567,31750646..31750746, 31750852..31750967,31751488..31751576,31751693..31751786, 31751866..31751898,31752216..31752333,31753246..31753346, 31753433..31753513,31753937..31754131,31754861..31754995, 31755381..31755459,31755970..31756030,31756133..31756228, 31756751..31756832,31756988..31757131,31757233..31757727)) /locus_tag="TCM_016189" /product="Generative cell specific-1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019819001" /inference="similar to AA sequence:Phytozome:GSVIVT01019819001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2291t2" CDS complement(join(31750149..31750567,31750646..31750746, 31750852..31750967,31751488..31751576,31751693..31751786, 31751866..31751898,31752216..31752333,31753246..31753346, 31753433..31753513,31753937..31754131,31754861..31754995, 31755381..31755459,31755970..31756030,31756133..31756228, 31756751..31756832,31756988..31757131,31757233..31757505)) /locus_tag="TCM_016189" /codon_start=1 /product="Generative cell specific-1" /protein_id="EOY24637.1" /db_xref="Phytozome:GSVIVT01019819001" /db_xref="TAIR:AT4G11720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1AP31" /translation="MAVLKLPLNPSVPAFWILQISTGKKRLFLKMGRSKRFLFCIFSF LCLQYEVVSVQILSKSKLEKCEKSTDSNDKLNCTTKIVINMAVPSGSSGGEASMVAEI VEVEENSTNKMQTLRIPPVITINKSAAYALYELTYIRDVPFKPQEFYVKTRKCEPDAG ANVVKIFLFVFRLLPFLLKPICCACGSQRRVPSSCGNIFDKLLKGKANTAHCLRFPGD WFHVFGIGQRSIGFSVRIEMKTGSKVSEVVVGPENRTATSNDNFLRVNLIGDFVGYSN IPTFEDFYLVIPRQGGPGQPNDLGRNFSMWLLLERVRFTLDGVECNKIGVNYEAFNGQ PNFCLSPFWSCLHNQLWNFWEADQNRINRRQLPLYGVQGRFERINEHPNAGSHSFSIG VTEVLNTNLLVELRADDIDYVFQRSPGKIISVTVPTFEALTQFGVATITARNTGEVEA SYSLTFDCSKGVALMEEQFFILKPKEISARSFKLYPATDQAAKYVCTAILKDSEFNEV DRAECQFSTTATVLDNGSQITPFQPPKTGINGFFESIERIWKNIWEILVDFITGETCR RKCSAFFDFSCHIQYICMSWIVLFGLLLAIFPTVLVLLWLLHQKGIFDPLYDWWEDHF GFDDQRIRDSHRHSIGIGHSHVHANKHNKARQHKHDSRYKRISIHQEHRHNHSEGDTD FYYYLHHVHKDKHKHRRVKSSSIKQQVHLDRRKNDDVGHHKHRRAIETIERPLKLK" gene 31758022..31766407 /locus_tag="TCM_016190" /note="dbxref CacaoGD:Thecc1EG016190" mRNA join(31758022..31758475,31758531..31759139, 31760902..31761327,31761438..31761539,31761634..31761738, 31762114..31762660,31763041..31763081,31763175..31763243, 31763330..31763430,31763727..31763805,31763894..31763992, 31764082..31764150,31764312..31764361,31764451..31764532, 31764640..31764734,31764820..31766407) /locus_tag="TCM_016190" /product="Map3k delta-1 protein kinase, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011340" /inference="similar to AA sequence:ricco:30190.m011340" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b015643t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1842t3" mRNA join(31758022..31758475,31758531..31759139, 31760940..31761327,31761438..31761539,31761634..31761738, 31762114..31762660,31763041..31763081,31763175..31763243, 31763330..31763430,31763727..31763805,31763894..31763992, 31764082..31764150,31764312..31764361,31764451..31764532, 31764640..31764734,31764820..31765243) /locus_tag="TCM_016190" /product="Map3k delta-1 protein kinase, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011340" /inference="similar to AA sequence:ricco:30190.m011340" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1842t3" CDS join(31758850..31759139,31760940..31761327, 31761438..31761539,31761634..31761738,31762114..31762660, 31763041..31763081,31763175..31763243,31763330..31763430, 31763727..31763805,31763894..31763992,31764082..31764150, 31764312..31764361,31764451..31764532,31764640..31764734, 31764820..31764922) /locus_tag="TCM_016190" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011340" /codon_start=1 /product="Map3k delta-1 protein kinase, putative isoform 1" /protein_id="EOY24638.1" /db_xref="TAIR:AT4G23050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC41" /translation="MAGDDSEASLYRVLVDRCLGLEASHAKLREEFGELVQQDKRKTE VVGTSDSGDATPYSCFVTFPGFFSTGSPFKNVLESIGHAVHVCSASSEKITFWNRSAE NLFGWRSNEVLGQRDTELLIAEEYNTPLKKIMEKLSSGKSWSGQFPLKRRSGEMFMAL VSKSPLYEDGQLTGIITVSSDAAIFNGINSESLGKYQDHGRLRRIKMKRIQWHPPRPQ IAPSVSNLASRFLLNKQAGTNSRDKEDAVTSTEDKLETPNTAEGKFYTNSHEESNPAE GTSCRKDENAFNFAQPSKIAAKVLAKLHVRETSNHSNKYDESLQQNGTTSRLARNDVT DVPNSFGDSNASAPNHFNPLSAAENAISSVHKHTSPASVEEKNVLASSRECNGQFCLT RIGDSTAGLACQGNGNELELEFPNMDASEMEDEVQKHTDGKNFSSLGESIGSQGSSSS KGDNESNSIVDCEIQWEDLHLGEEVGQGSYAIVYRGIWNGSDVAVKVYFVGEHKESTL LEYKKEIDIMRKLRHPNVLLFMGAVYSQERLAIVTEYLPRGSLFKILHKNNQALDLRR RMKMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDRNWNVKVADFGLSRWKNATFLTT KSGRGTPQWMAPEVLRNEPSNEKSDVFSFGVLLWELVTVSIPWNNLNSLQVVGVVGFM DRRLELPEGLDPQVASIIRDCWRSDPENRPSFEDIINRMTGIFPKSTTGLARRSSES" CDS join(31761049..31761327,31761438..31761539, 31761634..31761738,31762114..31762660,31763041..31763081, 31763175..31763243,31763330..31763430,31763727..31763805, 31763894..31763992,31764082..31764150,31764312..31764361, 31764451..31764532,31764640..31764734,31764820..31764922) /locus_tag="TCM_016190" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011340" /codon_start=1 /product="Map3k delta-1 protein kinase, putative isoform 2" /protein_id="EOY24639.1" /db_xref="TAIR:AT4G23050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC41" /translation="MEKLSSGKSWSGQFPLKRRSGEMFMALVSKSPLYEDGQLTGIIT VSSDAAIFNGINSESLGKYQDHGRLRRIKMKRIQWHPPRPQIAPSVSNLASRFLLNKQ AGTNSRDKEDAVTSTEDKLETPNTAEGKFYTNSHEESNPAEGTSCRKDENAFNFAQPS KIAAKVLAKLHVRETSNHSNKYDESLQQNGTTSRLARNDVTDVPNSFGDSNASAPNHF NPLSAAENAISSVHKHTSPASVEEKNVLASSRECNGQFCLTRIGDSTAGLACQGNGNE LELEFPNMDASEMEDEVQKHTDGKNFSSLGESIGSQGSSSSKGDNESNSIVDCEIQWE DLHLGEEVGQGSYAIVYRGIWNGSDVAVKVYFVGEHKESTLLEYKKEIDIMRKLRHPN VLLFMGAVYSQERLAIVTEYLPRGSLFKILHKNNQALDLRRRMKMALDVARGMNYLHH RNPPIVHRDLKSSNLLVDRNWNVKVADFGLSRWKNATFLTTKSGRGTPQWMAPEVLRN EPSNEKSDVFSFGVLLWELVTVSIPWNNLNSLQVVGVVGFMDRRLELPEGLDPQVASI IRDCWRSDPENRPSFEDIINRMTGIFPKSTTGLARRSSES" mobile_element complement(31766760..31766828) /note="source:CACAO_M_S_E18314_F233_scaffold_3 1275 1346" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31767489..31767661) /note="source:scaffold_5_CACTA_0610 5141 5320" /mobile_element_type="transposon:TIR/CACTA" gene 31768089..31772933 /locus_tag="TCM_016191" /note="dbxref CacaoGD:Thecc1EG016191" mRNA join(31768089..31768729,31770516..31770716, 31771336..31771413,31771539..31772933) /locus_tag="TCM_016191" /product="IQ-domain 22, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011341" /inference="similar to AA sequence:Phytozome:POPTR_0001s08910.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10022t2" CDS join(31768214..31768729,31770516..31770716, 31771336..31771413,31771539..31772270) /locus_tag="TCM_016191" /codon_start=1 /product="IQ-domain 22, putative" /protein_id="EOY24640.1" /db_xref="Phytozome:POPTR_0001s08910.1" /db_xref="TAIR:AT4G23060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKM3" /translation="MGKASKWFRSILGLKKTDSLHQLSSSSSSKPPQQQQPPHKDKRR WSFVKSFREKDSIISTTKHTAAANSSSTSIAKSSPYGRQQQQKEYVSVGANGECEAVD PNKHAIAVAAATAAVAEAAVAAAQAAAAVVRLTSSSGRSARDPASHVSSSCGAREEFA AVKIQSAFRGYLARRALRALKGLVRLQALVRGHIERKRTAEWVRRMQALLRAQARARA GRAQISESSQSSSKSSHFHHPGPPTPEKFEHAIRSKSTKHEQSSMLKRSGSKSRGRTL DNHEKIPLGWNRSDRRIDEQSWDQQVHSTRVGPMDDEKDDKILEVDTGKPQFSSKRRN LFHSTHLALNSDLYSCSFTNSRDSHQTAPSPSSGEVQSISPLKCSHEVEESAFCTADN SPQFYSASSKGGSSRGRSPFTPAKSDGSRSFLSGYSDHPNYMAYTESSRAKVRSLSAP KQRPQYERSSSTKRYSIHGFAELKSNTQRPSLHANFASKAYPGSGRLDRLGMPLGYRY " gene complement(31773541..31777387) /locus_tag="TCM_016192" /note="dbxref CacaoGD:Thecc1EG016192" mRNA complement(join(31773541..31773918,31774117..31774367, 31774673..31774836,31775210..31775373,31776813..31777387)) /locus_tag="TCM_016192" /product="RHOMBOID-like 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019824001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015111t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s12310.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10021t1" CDS complement(join(31773807..31773918,31774117..31774367, 31774673..31774836,31775210..31775373,31776813..31777111)) /locus_tag="TCM_016192" /note="paralog of Thecc1EG015111t1" /codon_start=1 /product="RHOMBOID-like 2" /protein_id="EOY24641.1" /db_xref="Phytozome:POPTR_0003s12310.1" /db_xref="TAIR:AT1G63120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC43" /translation="MASGDLERGGGSNGKNRANNYYQSASTGPYYMESAEKQWTSWLV PMFVVANVAVFVVVMYINNCPKNNLGIEGSCVAKFLGRLSFQPLKENPLFGPSSNTLE KLGALEWNKVVHGDQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGLI YLLSGFGGSILSSLFIQRNISVGASGALFGLLGAMLSELLTNWTIYTNKAAALITLVI IIAINLAVGILPHVDNFAHIGGFFAGFLLGFVLLLRPQFGWVERQHLPAGARVKSKHK AYQYVFWVIAVVLLIVGFTVGLVMLFRGENGNDHCSWCHYLSCVPTSKWRCGN" mobile_element 31774994..31775061 /note="source:CACAO_M_S_E101405_F231_scaffold_9 1420 1486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31775002..31775070) /note="source:CACAO_M_E42804_F230_scaffold_5 1735 1804" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31780791..31783945) /locus_tag="TCM_016193" /note="dbxref CacaoGD:Thecc1EG016193" mRNA complement(join(31780791..31781006,31781230..31781365, 31781445..31781559,31781653..31781847,31781929..31782057, 31782477..31782672,31782912..31783013,31783111..31783217, 31783686..31783944)) /locus_tag="TCM_016193" /product="Replication factor C 2 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G63160.1" /inference="similar to AA sequence:ricco:30190.m011152" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02677t00002" mRNA complement(join(31781061..31781559,31781653..31781847, 31781929..31782057,31782477..31782672,31782912..31783013, 31783111..31783217,31783686..31783945)) /locus_tag="TCM_016193" /product="Replication factor C 2 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G63160.1" /inference="similar to AA sequence:ricco:30190.m011152" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10463t1; alternateUTRof:Thecc1EG016193t1; inference alignment:Newbler:10:TSA:cgbaL_g02677t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10032t1" mRNA complement(join(31781133..31781365,31781486..31781559, 31781653..31781847,31781929..31782057,31782477..31782672, 31782912..31783013,31783111..31783217,31783686..31783924)) /locus_tag="TCM_016193" /product="Replication factor C / DNA polymerase III gamma-tau subunit isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G63160.1" /inference="similar to AA sequence:ricco:30190.m011152" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01197t00001_C2; inference alignment:Newbler:10:TSA:cgbaL_g02677t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10032t1" CDS complement(join(31781146..31781365,31781486..31781559, 31781653..31781847,31781929..31782057,31782477..31782672, 31782912..31783013,31783111..31783217,31783686..31783844)) /locus_tag="TCM_016193" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011152" /codon_start=1 /product="Replication factor C / DNA polymerase III gamma-tau subunit isoform 2" /protein_id="EOY24643.1" /db_xref="TAIR:AT1G63160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P35250" /translation="MASSSSSSSGGYDVPWVEKYRPNKVSDIVGNEDAVSRLQVIAHD GNMPNLILSGPPGTGKTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFA QKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQ SRCALVRFSRLSDQEILGRLMVVVDAEKVPYVPEGLEAIIFTADGDMRQALNNLQATF SGFRFVNQENVFKVCDQPHPLHVKNMVRYVLEGRFDDACLGLKQLYDLGYSPTDIITT LFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKFLTKTICSDCSWS AEVVAFIWELVVQFRSLSPSNLTSPPWLLYFKVMNEVGESFDCFTLDATILILNICLQ K" CDS complement(join(31781449..31781559,31781653..31781847, 31781929..31782057,31782477..31782672,31782912..31783013, 31783111..31783217,31783686..31783844)) /locus_tag="TCM_016193" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011152" /codon_start=1 /product="Replication factor C 2 isoform 1" /protein_id="EOY24642.1" /db_xref="TAIR:AT1G63160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P35250" /translation="MASSSSSSSGGYDVPWVEKYRPNKVSDIVGNEDAVSRLQVIAHD GNMPNLILSGPPGTGKTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFA QKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQ SRCALVRFSRLSDQEILGRLMVVVDAEKVPYVPEGLEAIIFTADGDMRQALNNLQATF SGFRFVNQENVFKVCDQPHPLHVKNMVRYVLEGRFDDACLGLKQLYDLGYSPTDIITT LFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKFSLVRETAKAA" CDS complement(join(31781449..31781559,31781653..31781847, 31781929..31782057,31782477..31782672,31782912..31783013, 31783111..31783217,31783686..31783844)) /locus_tag="TCM_016193" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m011152" /codon_start=1 /product="Replication factor C 2 isoform 1" /protein_id="EOY24644.1" /db_xref="TAIR:AT1G63160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P35250" /translation="MASSSSSSSGGYDVPWVEKYRPNKVSDIVGNEDAVSRLQVIAHD GNMPNLILSGPPGTGKTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFA QKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQ SRCALVRFSRLSDQEILGRLMVVVDAEKVPYVPEGLEAIIFTADGDMRQALNNLQATF SGFRFVNQENVFKVCDQPHPLHVKNMVRYVLEGRFDDACLGLKQLYDLGYSPTDIITT LFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKFSLVRETAKAA" mobile_element 31784450..31784732 /note="source:scaffold_1_CACTA_0008 1027 1310" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31785264..31785516 /note="source:CACAO_on_E69_scaffold_9 16 315" /mobile_element_type="transposon:TIR/hAT" gene 31787655..31791439 /locus_tag="TCM_016194" /note="dbxref CacaoGD:Thecc1EG016194" mRNA join(31787655..31788365,31788966..31789085, 31789183..31789315,31790339..31790503,31790698..31791439) /locus_tag="TCM_016194" /product="Zinc finger, C3HC4 type (RING finger) family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011153" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005408t1" /inference="similar to AA sequence:ricco:30190.m011153" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10489t1; inference alignment:Newbler:10:TSA:cgbaL_g02442t00002" mRNA join(31787798..31788365,31788963..31789085, 31789183..31789315,31790339..31790503,31790698..31791392) /locus_tag="TCM_016194" /product="Zinc finger, C3HC4 type (RING finger) family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011153" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005408t1" /inference="similar to AA sequence:ricco:30190.m011153" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02442t00002" CDS join(31787809..31788365,31788963..31789085, 31789183..31789315,31790339..31790503,31790698..31790865) /locus_tag="TCM_016194" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011153; paralog of Thecc1EG005408t1" /codon_start=1 /product="Zinc finger, C3HC4 type (RING finger) family protein isoform 1" /protein_id="EOY24645.1" /db_xref="TAIR:AT4G11680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUF7" /translation="MASTTPTNRSSSDDIIDTTPFLSSSSSVSRDESTTRRSVRRQSL REAARFLRRASSRRMMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIIWNFAFVAV AVGVLVWSRDERPNMPLRLWIIGYALQCLLHMVCVCVEYRRRRRRQSVEYRPFNAGEE GVLSPGSRADSEQYVTLAQLEEDGGSSVAKHLESANTMFSFIWWIIGFYWVSVGGQAL ARGSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASK EDIDQLSKFRFRKTCNDEKIAGDAEGPVGGIMTECSTDSPMEHVLSQDDAECCICLSP YDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSHEEV" CDS join(31787809..31788365,31788966..31789085, 31789183..31789315,31790339..31790503,31790698..31790865) /locus_tag="TCM_016194" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011153; paralog of Thecc1EG005408t1" /codon_start=1 /product="Zinc finger, C3HC4 type (RING finger) family protein isoform 2" /protein_id="EOY24646.1" /db_xref="TAIR:AT4G11680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUF7" /translation="MASTTPTNRSSSDDIIDTTPFLSSSSSVSRDESTTRRSVRRQSL REAARFLRRASSRRMMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIIWNFAFVAV AVGVLVWSRDERPNMPLRLWIIGYALQCLLHMVCVCVEYRRRRRRQSVEYRPFNAGEE GVLSPGSRADSEQYVTLAQLEEDGGSVAKHLESANTMFSFIWWIIGFYWVSVGGQALA RGSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKE DIDQLSKFRFRKTCNDEKIAGDAEGPVGGIMTECSTDSPMEHVLSQDDAECCICLSPY DDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSHEEV" gene 31791539..31805341 /locus_tag="TCM_016195" /note="dbxref CacaoGD:Thecc1EG016195" mRNA join(31791539..31792305,31792493..31792557, 31793016..31793283,31793498..31793564,31793709..31793859, 31794370..31794537,31794996..31795094,31795222..31795431, 31795555..31795656,31795934..31796164,31796435..31796515, 31797063..31797146,31797226..31797408,31797499..31797657, 31798604..31798696,31799330..31799401,31799725..31799842, 31800283..31800455,31801401..31801485,31801982..31802119, 31802584..31802690,31802876..31802953,31803039..31803134, 31803663..31803758,31803841..31804024,31804585..31805335) /locus_tag="TCM_016195" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011154" /inference="similar to AA sequence:Phytozome:GSVIVT01019827001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1586t5" mRNA join(31791680..31792305,31792493..31792557, 31793016..31793283,31793487..31793564,31793709..31793859, 31794370..31794537,31794996..31795094,31795222..31795431, 31795555..31795656,31795934..31796164,31796435..31796515, 31797063..31797146,31797226..31797408,31797499..31797657, 31798604..31798696,31799330..31799401,31799725..31799842, 31800283..31800455,31801401..31801485,31801982..31802119, 31802584..31802690,31802876..31802953,31803039..31803134, 31803663..31803758,31803841..31804024,31804585..31805341) /locus_tag="TCM_016195" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011154" /inference="similar to AA sequence:ricco:30190.m011154" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1529t10; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1586t5" CDS join(31792128..31792305,31792493..31792557, 31793016..31793283,31793498..31793564,31793709..31793859, 31794370..31794537,31794996..31795094,31795222..31795431, 31795555..31795656,31795934..31796164,31796435..31796515, 31797063..31797146,31797226..31797408,31797499..31797657, 31798604..31798696,31799330..31799401,31799725..31799842, 31800283..31800455,31801401..31801485,31801982..31802119, 31802584..31802690,31802876..31802953,31803039..31803134, 31803663..31803758,31803841..31804024,31804585..31804754) /locus_tag="TCM_016195" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24647.1" /db_xref="Phytozome:GSVIVT01019827001" /db_xref="TAIR:AT4G11670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TW52" /translation="MEQDSLLQCYRRDRRKLLEFLFSSGLIKEIRTPSGSTPSLSDAD FDTISADYILHCIKSGGIVDVSEATKKYYAESTHPIMIHSKLGDSYFLTSDPDLAGSP PRRVPPTIVSRTTNHASSSSSQLDSSKFKNVEMSGDDYGLKHKAETAVARAPLETSGI PSLGLPPLKTGLSDDDLRESAYELLLASMLFSGVEVCPVEDRKKDKSSKFLSRLKSKR EKPHLQPQLSERHSELIDTIRAQMQISEAMDGCIRRNMVHLAARRTCGQIDLPQISLE LLIGIFRSDFLNEKSYIQWKSRQVNMLEELLYFSAKLPETEHLTIKSCLAKIRDTKEW DVAMSPSQRVEVISFIRQVASKVSSQQGLFGLQNETYYWHAAYHLNIRLYEKLLYVMF DILDEGQLIEEADAIQSLIKLTWSTLGITQKMHNALYGWVLVQQFAGTDEGTLLEHAV FPLQRVVSAEEDDWNEGQYMDGIICLKKCNGSETNLNLVQAIFLSIGTWCDSRLQDYH LYFSEKPVNFRRVMALASAIGMLTSVNGAEIKLTMNGSKSSSGEKIKNYVERSVEAAI GQVAKSILESKVEKTHPLALLANQLRLVAEREMNIFFPVFRHWSPESITISMQRLHQF YGQRLIPFLKGVSSLSEEARSVLPAAFMLDQKLGQLYTSAFEEQTAHHSVRPYLDHYQ IEKVSGPIILDWVIGQHAHILEWTGRVLDLEDWEPLSFHQRQAASIIEVFRILEETVD QLFGMNLPLDITHLQALLSIVFHSLDGYLSRVLNQLVEKNHLYPSAPPLTRYTETVIP IIKKRLNEYTVLDDNVLDRLNELTIPKLCIRLNTLQYIQKQVGLLEDGIRNSWALVRP SLNQGRAKEEPVEILESDSLSHHEAVDELFVTTFNIIRDTAKDTGRKICDLIGTRVVF WDLRDAFLFHLYRDNVESARLENFLTDFDTVLDNVCGLIDDSVRDLVVLSVYQASLEG FVWVLLDGGPCRAFSDSDSILMEEDLMMLKEFFIADGEGLPRSLVEQEAKFAERILQM FSLQTETVIQMLMTASEIISMGLDSNKHDHLHLGDAHTLVRVLCHKKDREASKFLKVQ YQLPMSSDYDDAPSRDSTSRSPLISDVLKRSTSIHWTKKGQSGLKSMKKKLQGATNEI RNVAR" mRNA join(31792530..31792557,31793016..31793283, 31793498..31793564,31793709..31793859,31794370..31794537, 31794996..31795094,31795222..31795431,31795555..31795656, 31795934..31796164,31796435..31796515,31797063..31797146, 31797226..31797408,31797499..31797657,31798604..31798696, 31799330..31799401,31799725..31799842,31800283..31800455, 31801401..31801485,31801982..31802119,31802584..31802690, 31802876..31802953,31803039..31803539,31803663..31803758, 31803841..31804024,31804585..31805341) /locus_tag="TCM_016195" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30190.m011154" /inference="similar to AA sequence:Phytozome:GSVIVT01019827001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1586t8; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1586t5" CDS join(31792555..31792557,31793016..31793283, 31793498..31793564,31793709..31793859,31794370..31794537, 31794996..31795094,31795222..31795431,31795555..31795656, 31795934..31796164,31796435..31796515,31797063..31797146, 31797226..31797408,31797499..31797657,31798604..31798696, 31799330..31799401,31799725..31799842,31800283..31800455, 31801401..31801485,31801982..31802119,31802584..31802690, 31802876..31802953,31803039..31803155) /locus_tag="TCM_016195" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY24649.1" /db_xref="Phytozome:GSVIVT01019827001" /db_xref="TAIR:AT4G11670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TW52" /translation="MIHSKLGDSYFLTSDPDLAGSPPRRVPPTIVSRTTNHASSSSSQ LDSSKFKNVEMSGDDYGLKHKAETAVARAPLETSGIPSLGLPPLKTGLSDDDLRESAY ELLLASMLFSGVEVCPVEDRKKDKSSKFLSRLKSKREKPHLQPQLSERHSELIDTIRA QMQISEAMDGCIRRNMVHLAARRTCGQIDLPQISLELLIGIFRSDFLNEKSYIQWKSR QVNMLEELLYFSAKLPETEHLTIKSCLAKIRDTKEWDVAMSPSQRVEVISFIRQVASK VSSQQGLFGLQNETYYWHAAYHLNIRLYEKLLYVMFDILDEGQLIEEADAIQSLIKLT WSTLGITQKMHNALYGWVLVQQFAGTDEGTLLEHAVFPLQRVVSAEEDDWNEGQYMDG IICLKKCNGSETNLNLVQAIFLSIGTWCDSRLQDYHLYFSEKPVNFRRVMALASAIGM LTSVNGAEIKLTMNGSKSSSGEKIKNYVERSVEAAIGQVAKSILESKVEKTHPLALLA NQLRLVAEREMNIFFPVFRHWSPESITISMQRLHQFYGQRLIPFLKGVSSLSEEARSV LPAAFMLDQKLGQLYTSAFEEQTAHHSVRPYLDHYQIEKVSGPIILDWVIGQHAHILE WTGRVLDLEDWEPLSFHQRQAASIIEVFRILEETVDQLFGMNLPLDITHLQALLSIVF HSLDGYLSRVLNQLVEKNHLYPSAPPLTRYTETVIPIIKKRLNEYTVLDDNVLDRLNE LTIPKLCIRLNTLQYIQKQVGLLEDGIRNSWALVRPSLNQGRAKEEPVEILESDSLSH HEAVDELFVTTFNIIRDTAKDTGRKICDLIGTRVVFWDLRDAFLFHLYRDNVESARLE NFLTDFDTVLDNVCGLIDDSVRDLVVLSVYQASLEGFVWVLLDGGPCRAFSDSDSILM EEDLMMLKVCVFLL" CDS join(31793551..31793564,31793709..31793859, 31794370..31794537,31794996..31795094,31795222..31795431, 31795555..31795656,31795934..31796164,31796435..31796515, 31797063..31797146,31797226..31797408,31797499..31797657, 31798604..31798696,31799330..31799401,31799725..31799842, 31800283..31800455,31801401..31801485,31801982..31802119, 31802584..31802690,31802876..31802953,31803039..31803134, 31803663..31803758,31803841..31804024,31804585..31804754) /locus_tag="TCM_016195" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011154" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24648.1" /db_xref="TAIR:AT4G11670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TW52" /translation="MLFSGVEVCPVEDRKKDKSSKFLSRLKSKREKPHLQPQLSERHS ELIDTIRAQMQISEAMDGCIRRNMVHLAARRTCGQIDLPQISLELLIGIFRSDFLNEK SYIQWKSRQVNMLEELLYFSAKLPETEHLTIKSCLAKIRDTKEWDVAMSPSQRVEVIS FIRQVASKVSSQQGLFGLQNETYYWHAAYHLNIRLYEKLLYVMFDILDEGQLIEEADA IQSLIKLTWSTLGITQKMHNALYGWVLVQQFAGTDEGTLLEHAVFPLQRVVSAEEDDW NEGQYMDGIICLKKCNGSETNLNLVQAIFLSIGTWCDSRLQDYHLYFSEKPVNFRRVM ALASAIGMLTSVNGAEIKLTMNGSKSSSGEKIKNYVERSVEAAIGQVAKSILESKVEK THPLALLANQLRLVAEREMNIFFPVFRHWSPESITISMQRLHQFYGQRLIPFLKGVSS LSEEARSVLPAAFMLDQKLGQLYTSAFEEQTAHHSVRPYLDHYQIEKVSGPIILDWVI GQHAHILEWTGRVLDLEDWEPLSFHQRQAASIIEVFRILEETVDQLFGMNLPLDITHL QALLSIVFHSLDGYLSRVLNQLVEKNHLYPSAPPLTRYTETVIPIIKKRLNEYTVLDD NVLDRLNELTIPKLCIRLNTLQYIQKQVGLLEDGIRNSWALVRPSLNQGRAKEEPVEI LESDSLSHHEAVDELFVTTFNIIRDTAKDTGRKICDLIGTRVVFWDLRDAFLFHLYRD NVESARLENFLTDFDTVLDNVCGLIDDSVRDLVVLSVYQASLEGFVWVLLDGGPCRAF SDSDSILMEEDLMMLKEFFIADGEGLPRSLVEQEAKFAERILQMFSLQTETVIQMLMT ASEIISMGLDSNKHDHLHLGDAHTLVRVLCHKKDREASKFLKVQYQLPMSSDYDDAPS RDSTSRSPLISDVLKRSTSIHWTKKGQSGLKSMKKKLQGATNEIRNVAR" gene complement(31805445..31806293) /locus_tag="TCM_016196" /note="dbxref CacaoGD:Thecc1EG016196" mRNA complement(31805445..31806293) /locus_tag="TCM_016196" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene32413" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(31805715..31806218) /locus_tag="TCM_016196" /note="dbxref frave:gene32413" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKL6" /translation="MANNYPQFVAEITFLSAENLKKPSFALLSRRLRPIISISISKFN GNNPRADYKGDVLTLDDKFLVPIEANFFANRCSRIHLQLHTTWLLGRQAQLGWCWIGA DDIGAPPVGSVRYLSYRLRSKDGTKGNGIVNLKLKLDSYGCPANSRQEVSPRSNYAHR INWPEES" gene complement(31809559..31810730) /locus_tag="TCM_016197" /note="dbxref CacaoGD:Thecc1EG016197" mRNA complement(join(31809559..31810163,31810283..31810730)) /locus_tag="TCM_016197" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene32413" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10443t1" CDS complement(join(31809805..31810163,31810283..31810475)) /locus_tag="TCM_016197" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24651.1" /translation="MLDNTSHQQFTLEMTVVSAQGLKNTSSSLFSHRLRPFVTITTFP PTPFNGDNGHHMYQTRVDDQGSTGLVPDSRSRHRSPTGGFSQATQLPAASWRRHEDSG DCQCSCEVGRSSSPGCHSCPAFRQHVSDCDRYTGEGYARCGGDGCSLERGRDCDKCGR CGAGGGDGPNRMERRDMIIGGVQ" gene complement(31818875..31821289) /locus_tag="TCM_016198" /note="dbxref CacaoGD:Thecc1EG016198" mRNA complement(join(31818875..31820052,31820165..>31820190)) /locus_tag="TCM_016198" /product="Winged-helix DNA-binding transcription factor family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011156" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015119t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08990.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc306t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10056t1" mRNA complement(join(31819069..31820060,31820165..31820507, 31820925..31821289)) /locus_tag="TCM_016198" /product="Winged-helix DNA-binding transcription factor family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011156" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015119t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s08990.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10056t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10056t1" CDS complement(join(31819374..31820060,31820165..31820422)) /locus_tag="TCM_016198" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015119t1" /codon_start=1 /product="Winged-helix DNA-binding transcription factor family protein, putative isoform 1" /protein_id="EOY24652.1" /db_xref="Phytozome:POPTR_0001s08990.1" /db_xref="TAIR:AT4G11660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKL4" /translation="MAPLPADQPCESPTSAASDSQRSLPTPFLTKTYQLVDDPSVDDL ISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDC FRRGEKGLLRDIQRRKITPAAAAASATVTVAAVPCKVSPSNSDEQVISSNSPPVVAVV HRTTSCTTTPELLEENERLRKENMQLNHELTQLKGLCNNILTLMTNYASGQLENPSNL AEGKALDLLPARNSAGTAEDGGSKGAMAMEEEADDVTPKLFGVSIGVKRLRREEDDEE QNNNQVQQQDIEPGSEVKAEPLDGKTDDQDTAWLELGK" CDS complement(join(31819374..31820052,31820165..>31820190)) /locus_tag="TCM_016198" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015119t1" /codon_start=1 /product="Winged-helix DNA-binding transcription factor family protein, putative isoform 2" /protein_id="EOY24653.1" /db_xref="Phytozome:POPTR_0001s08990.1" /db_xref="TAIR:AT4G11660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKL4" /translation="ASSANSTLIKVVPDRWEFANDCFRRGEKGLLRDIQRRKITPAAA AASATVTVAAVPCKVSPSNSDEQVISSNSPPVVAVVHRTTSCTTTPELLEENERLRKE NMQLNHELTQLKGLCNNILTLMTNYASGQLENPSNLAEGKALDLLPARNSAGTAEDGG SKGAMAMEEEADDVTPKLFGVSIGVKRLRREEDDEEQNNNQVQQQDIEPGSEVKAEPL DGKTDDQDTAWLELGK" gene complement(31822774..31824747) /locus_tag="TCM_016199" /note="dbxref CacaoGD:Thecc1EG016199" mRNA complement(join(31822774..31823059,31823235..31823402, 31823501..31823613,31824458..31824747)) /locus_tag="TCM_016199" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma09g26280.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3801t2" CDS complement(join(31822830..31823059,31823235..31823402, 31823501..31823613,31824458..31824471)) /locus_tag="TCM_016199" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24654.1" /db_xref="Phytozome:Glyma09g26280.1" /translation="MKRWKGRVRWNEANLSEIEANKVVRKKIDEPKTPYHPMIEEDGF PSATPGTAKTIDYAAHAEALRNALSKVALSQKHFSPLGGWASSGEEGETGEKDQGFAK QRDDASFTESRRAHYDEFKKVKELQQELCFLNDEHNKGIHNSGSCSSLSIKAREIHIE DSDEILRIIDIEEY" gene 31824719..31828073 /locus_tag="TCM_016200" /note="dbxref CacaoGD:Thecc1EG016200" mRNA join(31824719..31824747,31824883..31825031, 31825260..31825565,31826065..31828073) /locus_tag="TCM_016200" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011157" /inference="similar to AA sequence:frave:gene23692" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11410t00001" CDS 31826177..31827859 /locus_tag="TCM_016200" /note="dbxref frave:gene23692" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY24655.1" /db_xref="TAIR:AT1G12770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W4E1" /translation="MPALASTRLLLFFGESLPFHRFPSVSRKVWCQLSVRFVSQVNHN NGPLTLASLGFKSEFGETNKNKGNKIERLSVSNEAPKSKVRVIGSNSIKGVKVVGVKK SLEIESAPFAAQSFPELGLPPLLLESLETAGYTVPTDVQSVAVPTVLKGHDVVIQSYT GSGKTLAYLLPILSEVGPLKKKSPNGNGESGKKREIEAVIVAPSRELGMQIVREFEKL LGPADKRVVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLV LDEVDELLSFNFREDMHRILEHVGRRSGADPRGSLAKWAERQTIMVSATVPYSVIRAA RSWGRDPLLVQAKKVMPLESVSPSGPVNLLRPTSSSDSSSNMQTQAASQSLPPALKHY HCVTKLQHKVDTLRRCVHALDSKSVIAFMNHAKQLKDAVFKLEARGMKAAELHGDLGK LVRSTTLKKFKHGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL GRKGTVVTICEEPEVFVVKKLQKQLGVPIPACEFTEGKLHVIEEEKPLGAAR" gene complement(31828400..31830072) /locus_tag="TCM_016201" /note="dbxref CacaoGD:Thecc1EG016201" mRNA complement(join(31828400..31828673,31828774..31828909, 31829426..31830072)) /locus_tag="TCM_016201" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011158" /inference="similar to AA sequence:Phytozome:POPTR_0001s09550.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08152t00001" CDS complement(join(31828488..31828673,31828774..31828909, 31829426..31829739)) /locus_tag="TCM_016201" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24656.1" /db_xref="Phytozome:POPTR_0001s09550.1" /db_xref="TAIR:AT4G11655.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKG2" /translation="MDQVNEPVKEGREHVLAIACRIMAGVSPVAAANSQTQHPFPTPS PFSFSVTSSRWSSRPSIDHTTLFLRFLLLLFSFISALSLAAPSTKKKDQRSPSFTEYP ELIYCFIVAILAFLYAAFQLFKGICDIAHRGILISDKTSDYLSFVLDQLVGYLLISSS SVAIPIIRQVEKSTPVRKGTITSTSMSFATFLVIAICALFSGYKLCKRTVW" gene complement(31830120..31833684) /locus_tag="TCM_016202" /note="dbxref CacaoGD:Thecc1EG016202" mRNA complement(join(31830120..31830551,31830856..31830947, 31831052..31831134,31831233..31831314,31831534..31831761, 31831905..31832006,31832484..31832619,31832869..31832918, 31833092..31833684)) /locus_tag="TCM_016202" /product="UDP-D-glucose/UDP-D-galactose 4-epimerase 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019833001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016477t1" /inference="similar to AA sequence:frave:gene32417" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:PASA:2:TSA:puevd3b015656t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g02704t00001" mRNA complement(join(31830124..31830529,31830856..31830947, 31831052..31831134,31831233..31831314,31831534..31831761, 31831905..31832006,31832484..31832619,31832869..31832918, 31833092..31833517)) /locus_tag="TCM_016202" /product="UDP-D-glucose/UDP-D-galactose 4-epimerase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019833001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016477t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s12380.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02704t00001" CDS complement(join(31830445..31830529,31830856..31830947, 31831052..31831134,31831233..31831314,31831534..31831761, 31831905..31832006,31832484..31832619,31832869..31832918, 31833092..31833286)) /locus_tag="TCM_016202" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016477t1" /codon_start=1 /product="UDP-D-glucose/UDP-D-galactose 4-epimerase 1 isoform 1" /protein_id="EOY24657.1" /db_xref="Phytozome:POPTR_0003s12380.1" /db_xref="TAIR:AT1G12780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42605" /translation="MGSLEKTILVTGGAGFIGTHTVVQLLNGGFRVSIIDNLDNSVIE AVHRVKELVGPELSKKLDFNLGDLRNREDLEKLFSKTHFDAVIHFAGLKAVGESVANP SRYFDNNLIGTINLYEIMAKYDCKKMVFSSSATVYGQPEKIPCVEDFELKAMNPYGRT KLFLEEIARDIQKAEPDWSIILLRYFNPVGAHESGKIGEDPKGIPNNLMPYIQQVAVG RLPELNVYGHDYPTKDGSAIRDYIHVMDLADGHIAALRKLFTTQNIGCIAYNLGTGCG TSVLEMVAAFEKASGKKIPIKLCPRRPGDATAVYASTEKAQKELGWKAKYGVAEMCRD QWNWASNNPWGFQSKP" CDS complement(join(31830497..31830551,31830856..31830947, 31831052..31831134,31831233..31831314,31831534..31831761, 31831905..31832006,31832484..31832619,31832869..31832918, 31833092..31833286)) /locus_tag="TCM_016202" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene32417; paralog of Thecc1EG016477t1" /codon_start=1 /product="UDP-D-glucose/UDP-D-galactose 4-epimerase 1 isoform 2" /protein_id="EOY24658.1" /db_xref="TAIR:AT1G12780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42605" /translation="MGSLEKTILVTGGAGFIGTHTVVQLLNGGFRVSIIDNLDNSVIE AVHRVKELVGPELSKKLDFNLGDLRNREDLEKLFSKTHFDAVIHFAGLKAVGESVANP SRYFDNNLIGTINLYEIMAKYDCKKMVFSSSATVYGQPEKIPCVEDFELKAMNPYGRT KLFLEEIARDIQKAEPDWSIILLRYFNPVGAHESGKIGEDPKGIPNNLMPYIQQVAVG RLPELNVYGHDYPTKDGSAIRDYIHVMDLADGHIAALRKLFTTQNIGCIAYNLGTGCG TSVLEMVAAFEKASGKKIPIKLCPRRPGDATAVYASTEKAQKELGWNQNFGLLQGKIW GRGNVP" gene complement(31834233..31838427) /locus_tag="TCM_016203" /note="dbxref CacaoGD:Thecc1EG016203" mRNA complement(join(31834233..31835545,31835734..31835862, 31836236..31836339,31836428..31836522,31836799..31836856, 31837185..31837239,31837373..31837519,31838107..31838427)) /locus_tag="TCM_016203" /product="Myb domain protein 3r-5, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019834001" /inference="similar to AA sequence:Phytozome:GSVIVT01019834001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3551t2" mRNA complement(join(31834406..31835545,31835734..31835862, 31836236..31836339,31836428..31836522,31836799..31837239, 31837373..31837519,31838107..31838278)) /locus_tag="TCM_016203" /product="Myb domain protein 3r-5, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019834001" /inference="similar to AA sequence:Phytozome:GSVIVT01019834001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3555t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3551t2" CDS complement(join(31834624..31835545,31835734..31835862, 31836236..31836339,31836428..31836522,31836799..31836856, 31837185..31837239,31837373..31837500)) /locus_tag="TCM_016203" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Myb domain protein 3r-5, putative isoform 1" /protein_id="EOY24659.1" /db_xref="Phytozome:GSVIVT01019834001" /db_xref="TAIR:AT5G02320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q948S4" /translation="MVEVKKEKDEYYEDLAEEDISASRSSFPDSSCDTAMRSASLQGM VTGPTRYSRKGGWSEEEDNLLTEAVKKCKARNWKKIAEFLPGRTDIQCLHRWQKVLNP GIFKGPWTKEEDDCITKLVEKYGCRKWSVIAKFLRGRIGKQCRERWYNHLDPTIRKDS WTEEEEAILAYYHQIYGNKWTTLAKLLPGRTDNAIKNHWNCTLKKKLGFYSPHRYAVD ICNDGSSDFSDQETTPKCLKVKEERQGLDETVSVYPNIDVDYSVDRCYLDLVLGIANQ TETKPEADSGKFEKCWSAGVPNEQITPLKRVHFDDKVNSTTEDSLIRSVRGNAKHAKI HEPQSASCRVASEDTQALLPSTSVGSPLSSLTFKFGEDNGQVDKESTNQRMHTAYASG CLLHNEPSQPKDSTSAIIPIVDNQDMHIKSSFCYSAPPKLVGSRSLNSGSPESILRIS AMTFKNPSIIRKRSYKKAWNDNFSDAACSPARTFTCFHWEEVNGTY" CDS complement(join(31834624..31835545,31835734..31835862, 31836236..31836339,31836428..31836522,31836799..31836874)) /locus_tag="TCM_016203" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Myb domain protein 3r-5, putative isoform 2" /protein_id="EOY24660.1" /db_xref="Phytozome:GSVIVT01019834001" /db_xref="TAIR:AT5G02320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q948S4" /translation="MIMVGQDNLLTEAVKKCKARNWKKIAEFLPGRTDIQCLHRWQKV LNPGIFKGPWTKEEDDCITKLVEKYGCRKWSVIAKFLRGRIGKQCRERWYNHLDPTIR KDSWTEEEEAILAYYHQIYGNKWTTLAKLLPGRTDNAIKNHWNCTLKKKLGFYSPHRY AVDICNDGSSDFSDQETTPKCLKVKEERQGLDETVSVYPNIDVDYSVDRCYLDLVLGI ANQTETKPEADSGKFEKCWSAGVPNEQITPLKRVHFDDKVNSTTEDSLIRSVRGNAKH AKIHEPQSASCRVASEDTQALLPSTSVGSPLSSLTFKFGEDNGQVDKESTNQRMHTAY ASGCLLHNEPSQPKDSTSAIIPIVDNQDMHIKSSFCYSAPPKLVGSRSLNSGSPESIL RISAMTFKNPSIIRKRSYKKAWNDNFSDAACSPARTFTCFHWEEVNGTY" gene 31839269..31840236 /locus_tag="TCM_016204" /note="dbxref CacaoGD:Thecc1EG016204" mRNA 31839269..31840236 /locus_tag="TCM_016204" /product="Osmotin 34" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400007584" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016206t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09000.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3803t1" CDS 31839321..31839998 /locus_tag="TCM_016204" /note="paralog of Thecc1EG016206t1" /codon_start=1 /product="Osmotin 34" /protein_id="EOY24661.1" /db_xref="Phytozome:POPTR_0001s09000.1" /db_xref="TAIR:AT4G11650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P25096" /translation="MMSFKNISIYSFVCAALYITLAHAATFNIRNNCPYTVWAAAAPG GGRQLDHGQVWDLDVSSGTGGARIWARTNCQFDEAGQGKCQTGDCGGLLQCQGYGLPP NTLAEYALNQFSGMDFFDISLVDGFNVPMEFSPTSSGCTRGIKCSSEIVGQCPTELQA PGGCNNPCTVFKTDQYCCNSGSCGPTNFSSFFKERCPDAYSYPKDDETSTFTCPAGTD YKVVFCP" gene complement(31840363..31841707) /locus_tag="TCM_016205" /note="dbxref CacaoGD:Thecc1EG016205" mRNA complement(31840363..31841707) /locus_tag="TCM_016205" /product="Nucleolar essential protein-related, putative" /inference="alignment:exonerate- protein:2:ricco:27751.m000174.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032188t3" /inference="similar to AA sequence:ricco:27751.m000174" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS complement(31840588..31841529) /locus_tag="TCM_016205" /note="dbxref ricco:27751.m000174; paralog of Thecc1EG032188t3" /codon_start=1 /product="Nucleolar essential protein-related, putative" /protein_id="EOY24662.1" /db_xref="TAIR:AT3G57000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H941" /translation="MVKRLLPGHLRFSRRPLYGFFPHLQRVSGRVEKKKSDRAILKLC SRQRPELEATGKGINAVEAKDKTLELVNKGRNQLVRNETISEVAAFELPGIPLAHSEP DRKSGVTFVLEQASLVCAKVGRRYPILNSNEHAAFLRKKNKNPYKYRPDIIHEVLSRI IDSRLCKSGRIQAIYVKTDEGVLIKVEPNTHIPRTPRRFRNMMAELLQKLSVKAANKH GKLLRLVQNPVTQHLPANSRKIGLSYSSNQLVRLKDYVGGISDNENLVFVVGAMAHGK IDADYVDDLISIYGGRMSARMCLEEIFEAVESKWKIL" mobile_element complement(31842868..31842940) /note="source:scaffold_2_CACTA_0259 14994 15065" /mobile_element_type="transposon:TIR/CACTA" gene 31845292..31846336 /locus_tag="TCM_016206" /note="dbxref CacaoGD:Thecc1EG016206" mRNA 31845292..31846336 /locus_tag="TCM_016206" /product="Osmotin 34" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400007584" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046303t1" /inference="similar to AA sequence:frave:gene00110" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3490t2" CDS 31845493..31846167 /locus_tag="TCM_016206" /note="dbxref frave:gene00110; paralog of Thecc1EG046303t1" /codon_start=1 /product="Osmotin 34" /protein_id="EOY24663.1" /db_xref="TAIR:AT4G11650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949L8" /translation="MKFKTVSIFSFSFIALYFTVATAAIINIRNNCPYTVWAAAVPGG GRQLDRGGVWDLNVNPGTTGARVWARTKCQFDGAGRGRCETGDCGGLLQCQAYGAPPN TLAEYALNQFNNKDFFDISLVDGFNIPMDFSPTSGGCTRGIRCTADIIGQCPNQLKAP GGCNNPCTVFRTDQYCCNSGNCRPTDFSRFFKTRCPDAYSYPKDDQTSTFTCPGGTNY RVVFCP" gene 31847013..31849966 /locus_tag="TCM_016207" /note="dbxref CacaoGD:Thecc1EG016207" mRNA join(31847013..31847061,31849153..31849966) /locus_tag="TCM_016207" /product="Pathogenesis-related thaumatin-like protein" /inference="alignment:exonerate-protein:2:frave:gene32422" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016206t1" /inference="similar to AA sequence:Phytozome:Glyma05g38110.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage" mobile_element complement(31848356..31849063) /note="source:CACAO_on_E373_scaffold_1 7 726" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS 31849501..31849866 /locus_tag="TCM_016207" /note="paralog of Thecc1EG016206t1" /codon_start=1 /product="Pathogenesis-related thaumatin-like protein" /protein_id="EOY24664.1" /db_xref="Phytozome:Glyma05g38110.1" /db_xref="TAIR:AT4G11650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8W7L5" /translation="MVWGVEDAKPVTVGGSSSAKPMVHPPNTLVEYTLSQFNSLDFFD ISLVDGFNVPMDFSPTSGGCSRGIRCTADIIGQCPHQLKARGGCNDPCTVFKTDQYCC NNCGPTDFSRFFKTRCPDA" gene 31851312..31852270 /locus_tag="TCM_016208" /note="dbxref CacaoGD:Thecc1EG016208" mRNA 31851312..31852270 /locus_tag="TCM_016208" /product="Osmotin 34" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09000.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016204t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09000.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 31851362..31852036 /locus_tag="TCM_016208" /note="paralog of Thecc1EG016204t1" /codon_start=1 /product="Osmotin 34" /protein_id="EOY24665.1" /db_xref="Phytozome:POPTR_0001s09000.1" /db_xref="TAIR:AT4G11650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P25096" /translation="MSSFKTLPTLSFLFVTLFSLAHAATFDIRNNCPYTVWAAAVPGG GRPMNRGETWQISAAPGTTQARIWARTNCQFDASGRGKCQTGDCGGVLECKGYGSPPN TLAEYAIGQFANQDFIDISNIDGFNVPMEFSSNSPGCTRVIKCTADIVGQCPNELKVP GGCNGPCPVFKTEEHCCNSGNCGPTNFSKFFKDRCPDAYSYPKDDPTSLFTCPTGTNY KVIFCP" mobile_element 31852816..31853651 /note="source:CACAO_MITE_S26_scaffold_1 2 844" /mobile_element_type="transposon:TIR/MITE" gene 31854759..31856092 /locus_tag="TCM_016209" /note="dbxref CacaoGD:Thecc1EG016209" mRNA 31854759..31856092 /locus_tag="TCM_016209" /product="Osmotin 34" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016206t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09030.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2018t1" CDS 31854920..31855642 /locus_tag="TCM_016209" /note="paralog of Thecc1EG016206t1" /codon_start=1 /product="Osmotin 34" /protein_id="EOY24666.1" /db_xref="Phytozome:POPTR_0001s09030.1" /db_xref="TAIR:AT4G11650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P50700" /translation="MSCLTNFQFSSILFTILFISTHAALFEIRNECSYTVWAAASPGG GRRLDPWQSWTINVPAGTAMARIWGRTNCNFDGSGRGQCKTGDCGGLLECRGWGAPPN TLAEYALNQFGNMDFYDISLVDGFNIPMVFGPTSGGCHNIWCTADINGQCPNELRAPG GCNNPCTVFKTNEFCCTQGYGTCGPTDFSRFFKSRCPDSYSYPQDDPSSTFTCAGGAN YRVVFCPRGSPHLEMVGSKSQE" gene 31857998..31859818 /locus_tag="TCM_016210" /note="dbxref CacaoGD:Thecc1EG016210" mRNA join(31857998..31858068,31858480..31858545, 31858750..31858876,31859148..31859265,31859554..31859818) /locus_tag="TCM_016210" /product="Elicitor-responsive protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019850001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042750t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s15700.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00333t00003" CDS join(31858002..31858068,31858480..31858545, 31858750..31858876,31859148..31859265,31859554..31859622) /locus_tag="TCM_016210" /note="paralog of Thecc1EG042750t1" /codon_start=1 /product="Elicitor-responsive protein, putative" /protein_id="EOY24667.1" /db_xref="Phytozome:POPTR_0002s15700.1" /db_xref="TAIR:AT1G63220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC69" /translation="MPQGTLEVVLVSAKGLENTDFLCNMDPYVLLTCRTQEQKSSVAS GKGSDPEWNETFVFNISEGVSELKLKIMDSDCSSQDDFVGEATIPLEPVFMEGNLPPA AYNVVKDEEYHGEIRLGLTFTPEERHTRDFQVEESFGGWKQSSYRD" gene complement(31859878..31867437) /locus_tag="TCM_016211" /note="dbxref CacaoGD:Thecc1EG016211" mRNA complement(join(31859878..31862582,31862713..31862776, 31863367..31863513,31863781..31863876,31864422..31864550, 31864941..31865042,31865497..31865625,31866032..31866133, 31866209..31866352,31867150..31867437)) /locus_tag="TCM_016211" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene32426" /inference="similar to AA sequence:ricco:30190.m011167" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10473t1" CDS complement(join(31860493..31862582,31862713..31862776, 31863367..31863513,31863781..31863876,31864422..31864550, 31864941..31865042,31865497..31865625,31866032..31866133, 31866209..31866352,31867150..31867233)) /locus_tag="TCM_016211" /note="dbxref ricco:30190.m011167" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24668.1" /translation="MTAKTSPDWLPAGWTLQFKVQKTGRRITHYVNLATGQKFFTKDD LIRYTKTGSTKCDDLQPTLRQTKMPPANGSMDTAVNANERPEWLPKNWFMELKTRKSG VRIGKHYKIYIDPSTGSRFYSKLQVFRFLNHVEQKSSKPKQKKKVSHSTSEIVVKAHE HPEWLPKNWFTELKTYKSGAKFGKSYKIYVDPSTGLRFHSRPEVFRFLDKGEQKSTKS KPKKRALCSTSKVVTRKSTVDDLPAGWIKEVKIKRHANGVRRDPYYTDPASGYVFRSK KDILRYLETGEIGRYAFLPKKKHSDDQNLIHTEKSQLPAAKRQKVKHPVTRRQLFTAR ETSDRSILSHLEAETFEKGQSEKDYTETRLATTSVPQSQSYVEVIATADKSNWSCSVA PKASKRNQGKTVSADNMVVSTAAANVLQVKNLLERGTEKKSNINSKDSGKSKNKKELD LPRRFSKRLAHHEPDLAACGLELVKPCQNEANGQCVLEDEATEQHNIGSSAEVAKQAS TDATVKSHWGSVKKTIKPIEDKVVLGKQPQMLETEKTSDTKSEVQPFVCSDPCLEFAI KTLTGAIPLQAASNKELVSTAASNVLQEKNLGKTRMGNKSRNIETRNSSKLKKMKELD LPCRSSKRLAGLEPELVASGGSIKVAVQNATTRSGKNEPKSPCLLVDKATRRPNVGPN AELPYQASAAAVNQEISSIRPHEGRAILGARPQMLGTQKGSDSKLELQPFFCSDPCLE FAIKTLTGAIPLEDAINEGLVSTPIANIQQQVNLAETRIEHSRCRKALFNSIRSKKDC SFPHRSLKQLAGRAPELEANSLSDERVLKIAARKSCNSKAIRNVDLTSENPIDKASQE LETGPRPALQHPDFTYRTTVFQVESPNKSKAPHLNLTAPTEMNIEKPGLHSAIPFGNS WSDSRFEFAFKTVTGSSPAEDSFAFQSNFHQQFGSSGSQIDGNFALPDYGLPSISQSD ISPHLGATAQLVMQQQCPVNPSFLPPGNVSLPSHSRVDAQRPYSKGNKELPGKVKP" gene 31868093..31871891 /locus_tag="TCM_016212" /note="dbxref CacaoGD:Thecc1EG016212" mRNA join(31868093..31868197,31868806..31869116, 31870134..31870265,31870405..31870521,31871237..31871891) /locus_tag="TCM_016212" /product="Transcription initiation factor IIE subunit beta" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g38060.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09040.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10051t3" CDS join(31868853..31869116,31870134..31870265, 31870405..31870521,31871237..31871578) /locus_tag="TCM_016212" /codon_start=1 /product="Transcription initiation factor IIE subunit beta" /protein_id="EOY24669.1" /db_xref="Phytozome:POPTR_0001s09040.1" /db_xref="TAIR:AT4G20330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8LQI2" /translation="MALQEKLDRFNKQQEKCQTMLSNIAAKSASSRAPTPKPTPVAAS PFPSGRSPAPVKFSNDTERLQHINSIRKAPVGAQMKRVIDILFQTRQAFTPEQINEAC YVDVNGNKDVFEGLRKNPKVNYDGKRFSYKSKHDVKNKNELLVLIRKYIEGIAVIDLK DAYPNVMEDLQALKAAGQIWLLSNFDSQEDIAFPNDPRVPIKVDDDLKELFRSIELPR DMLDIEKDLQKNGMKPATNTAKRRAAAQVQGISSKPKPRQKNKEFSKKTKLTNSHLPE LFQTLKNS" gene complement(31873582..31874208) /locus_tag="TCM_016213" /note="dbxref CacaoGD:Thecc1EG016213" mRNA complement(31873582..31874208) /locus_tag="TCM_016213" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09050.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09050.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10470t1" CDS complement(31873881..31874138) /locus_tag="TCM_016213" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24670.1" /db_xref="Phytozome:POPTR_0001s09050.1" /translation="MRIWNPKFSFLVFMIILATSHLSSSRYIHRSLSSEAEQTTRAEF STSPLWHFPAKSSEASRAEKSQPIYGVSYRTVPGGPNPLHN" gene complement(31876966..31882845) /locus_tag="TCM_016214" /note="dbxref CacaoGD:Thecc1EG016214" mRNA complement(join(31876966..31877469,31877639..31877821, 31879219..31879434,31879506..31879601,31879827..31879913, 31880005..31880211,31880332..31880556,31880641..31880696, 31881269..31881375,31881499..31882845)) /locus_tag="TCM_016214" /product="DEA(D/H)-box RNA helicase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019804001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005166t1" /inference="similar to AA sequence:ricco:30190.m011171" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10543t2" CDS complement(join(31877239..31877469,31877639..31877821, 31879219..31879434,31879506..31879601,31879827..31879913, 31880005..31880211,31880332..31880556,31880641..31880696, 31881269..31881375,31881499..31882604)) /locus_tag="TCM_016214" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011171; paralog of Thecc1EG005166t1" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 1" /protein_id="EOY24671.1" /db_xref="TAIR:AT1G63250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C8S9" /translation="MFSTVLLQRSKTLSDLLRSRILTRPMGGGPRTFPGGLNKWQWKR LHEKKAKEKERRLLDQEKQLYQARIRFQVRAKLAGKPDSSSNTTKYNPMSPNDHIKAL ADRFMKEGAVDLWNENDGPLKSEEQERPRIIETTRNQRSGSIYSPLDVKKLISDKRMQ NAKFNVVNSNHFGKSRSYSVQSKGKFRVNESSFGRIPLDLDSKDDSLKHSGRNIEQRR FKKNESSASQRESDFVSNDNSMKRVDQGGLGGNRENESPRNFRKFRKSGNGLERRRFR RNESSSSDDEWDSDIDDEVEGVGGGRDVRKLGSSASLGKYDVKITKRVPLKELEKDID FSEQVELLRKELDKKKLAENDEKKGEGETIYSQKRFDECGISSLTIKALSAAGYFKMT RVQEATLSVCLEGKDALVKAKTGTGKTAAFLLPAIETVLKAASSNTIQRAPPIYVLIL CPTRELASQLAAEANALLKYHDGIGVQTLVGGTRFKVDQKRLESDPCQIIVATPGRLL DHVENKSTLSVRLMGLKMLILDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPK EVRRISQLVLKREHAFIDTVGLGCVETHDKVKQSLLVAPHELHFQIVHHLLKKHISQA PDYKVIVFCTTGMVTSLVYLLLREMNMNVREIHSRKPQLYRTRISDEFRESGRLILVT SDVSARGMDYPDVTLVIQVGIPPDREQYIHRLGRTGREGKGGEGILLIAPWEEYFLDE IKDLPLEKLSLPHMDPDVKQQLEFAMAKIDGSIKEAAYHAWLGYYNSIREIGRDKTTL VELANQFSMSIGLQRPPPLFRKTAIKMGLKDIPGIRIRK" mRNA complement(join(31877812..31877821,31878128..31878388, 31879219..31879434,31879506..31879601,31879827..31879913, 31880005..31880211,31880332..31880556,31880641..31880696, 31881269..31881375,31881499..31882643)) /locus_tag="TCM_016214" /product="DEA(D/H)-box RNA helicase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019804001" /inference="similar to AA sequence:ricco:30190.m011171" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc704t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10543t2" mobile_element complement(31878218..31878284) /note="source:scaffold_9_CACTA_0943 9069 9144" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(31878329..31878388,31879219..31879434, 31879506..31879601,31879827..31879913,31880005..31880211, 31880332..31880556,31880641..31880696,31881269..31881375, 31881499..31882604)) /locus_tag="TCM_016214" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011171" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 2" /protein_id="EOY24672.1" /db_xref="TAIR:AT1G63250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C8S9" /translation="MFSTVLLQRSKTLSDLLRSRILTRPMGGGPRTFPGGLNKWQWKR LHEKKAKEKERRLLDQEKQLYQARIRFQVRAKLAGKPDSSSNTTKYNPMSPNDHIKAL ADRFMKEGAVDLWNENDGPLKSEEQERPRIIETTRNQRSGSIYSPLDVKKLISDKRMQ NAKFNVVNSNHFGKSRSYSVQSKGKFRVNESSFGRIPLDLDSKDDSLKHSGRNIEQRR FKKNESSASQRESDFVSNDNSMKRVDQGGLGGNRENESPRNFRKFRKSGNGLERRRFR RNESSSSDDEWDSDIDDEVEGVGGGRDVRKLGSSASLGKYDVKITKRVPLKELEKDID FSEQVELLRKELDKKKLAENDEKKGEGETIYSQKRFDECGISSLTIKALSAAGYFKMT RVQEATLSVCLEGKDALVKAKTGTGKTAAFLLPAIETVLKAASSNTIQRAPPIYVLIL CPTRELASQLAAEANALLKYHDGIGVQTLVGGTRFKVDQKRLESDPCQIIVATPGRLL DHVENKSTLSVRLMGLKMLILDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPK EVRRISQLVLKREHAFIDTVGLGCVETHDKVKQSLLVAPHELHFQIVHHLLKKHISQA PDYKVIVFCTTGMVTSLVYLLLREMNMNVREIHSRKPQLYRTRISDEFRESGRLILVT SDVSARGMDYPDVTLVIQYGKREKESCDAFMMLLLGF" mRNA complement(join(<31879205..31879434,31879506..31879556, 31879827..31879913,31880005..31880211,31880332..31880556, 31880641..31880696,31881269..31881375,31881499..31882643)) /locus_tag="TCM_016214" /product="DEA(D/H)-box RNA helicase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019804001" /inference="similar to AA sequence:ricco:30190.m011171" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc685t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10543t2" mRNA complement(join(31879205..31879434,31879506..31879640, 31879827..31879913,31880005..31880211,31880332..31880556, 31880641..31880696,31881269..31881375,31881499..31882643)) /locus_tag="TCM_016214" /product="DEA(D/H)-box RNA helicase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019804001" /inference="similar to AA sequence:ricco:30190.m011171" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc685t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10543t2" CDS complement(join(<31879207..31879434,31879506..31879556, 31879827..31879913,31880005..31880211,31880332..31880556, 31880641..31880696,31881269..31881375,31881499..31882604)) /locus_tag="TCM_016214" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30190.m011171" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 4" /protein_id="EOY24674.1" /db_xref="TAIR:AT1G63250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C8S9" /translation="MFSTVLLQRSKTLSDLLRSRILTRPMGGGPRTFPGGLNKWQWKR LHEKKAKEKERRLLDQEKQLYQARIRFQVRAKLAGKPDSSSNTTKYNPMSPNDHIKAL ADRFMKEGAVDLWNENDGPLKSEEQERPRIIETTRNQRSGSIYSPLDVKKLISDKRMQ NAKFNVVNSNHFGKSRSYSVQSKGKFRVNESSFGRIPLDLDSKDDSLKHSGRNIEQRR FKKNESSASQRESDFVSNDNSMKRVDQGGLGGNRENESPRNFRKFRKSGNGLERRRFR RNESSSSDDEWDSDIDDEVEGVGGGRDVRKLGSSASLGKYDVKITKRVPLKELEKDID FSEQVELLRKELDKKKLAENDEKKGEGETIYSQKRFDECGISSLTIKALSAAGYFKMT RVQEATLSVCLEGKDALVKAKTGTGKTAAFLLPAIETVLKAASSNTIQRAPPIYVLIL CPTRELASQLAAEANALLKYHDGIGVQTLVGGTRFKVDQKRLESDPCQIIVATPGRLL DHVENKSTLSVRLMGLKMLILDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPK EVRRISQLVLKREHAFIDTVGLGCVETHDKIVHHLLKKHISQAPDYKVIVFCTTGMVT SLVYLLLREMNMNVREIHSRKPQLYRTRISDEFRESGRLILVTSDVSARGMDYPDVTL VIQVLFL" CDS complement(join(31879632..31879640,31879827..31879913, 31880005..31880211,31880332..31880556,31880641..31880696, 31881269..31881375,31881499..31882604)) /locus_tag="TCM_016214" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m011171" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 3" /protein_id="EOY24673.1" /db_xref="TAIR:AT1G63250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C8S9" /translation="MFSTVLLQRSKTLSDLLRSRILTRPMGGGPRTFPGGLNKWQWKR LHEKKAKEKERRLLDQEKQLYQARIRFQVRAKLAGKPDSSSNTTKYNPMSPNDHIKAL ADRFMKEGAVDLWNENDGPLKSEEQERPRIIETTRNQRSGSIYSPLDVKKLISDKRMQ NAKFNVVNSNHFGKSRSYSVQSKGKFRVNESSFGRIPLDLDSKDDSLKHSGRNIEQRR FKKNESSASQRESDFVSNDNSMKRVDQGGLGGNRENESPRNFRKFRKSGNGLERRRFR RNESSSSDDEWDSDIDDEVEGVGGGRDVRKLGSSASLGKYDVKITKRVPLKELEKDID FSEQVELLRKELDKKKLAENDEKKGEGETIYSQKRFDECGISSLTIKALSAAGYFKMT RVQEATLSVCLEGKDALVKAKTGTGKTAAFLLPAIETVLKAASSNTIQRAPPIYVLIL CPTRELASQLAAEANALLKYHDGIGVQTLVGGTRFKVDQKRLESDPCQIIVATPGRLL DHVENKSTLSVRLMGLKMLILDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPK EVRRISQLVLKREHAFIDTVGLGCVETHDKLQ" gene complement(31882946..31886286) /locus_tag="TCM_016216" /note="dbxref CacaoGD:Thecc1EG016216" mRNA complement(join(31882946..31883270,31883354..31883452, 31883593..31883668,31883764..31883889,31884022..31884089, 31884164..31884247,31884326..31884374,31884699..31884746, 31885331..31885386,31885484..31885538,31885610..31885722, 31886132..31886286)) /locus_tag="TCM_016216" /product="Tetraspanin10" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041101t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019805001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10479t2" CDS complement(join(31883387..31883452,31883593..31883668, 31883764..31883889,31884022..31884089,31884164..31884247, 31884326..31884374,31884699..31884746,31885331..31885386, 31885484..31885538,31885610..31885722,31886132..31886185)) /locus_tag="TCM_016216" /note="paralog of Thecc1EG041101t1" /codon_start=1 /product="Tetraspanin10" /protein_id="EOY24675.1" /db_xref="Phytozome:GSVIVT01019805001" /db_xref="TAIR:AT1G63260.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I214" /translation="MGMGTSNFVIRWINFLTMLLAIAVVIFGVWMSTHHDGCRKSLTL PVLGLGAFIFIISIIGFLGAVKKNTILLWIYLIMLCIILVAILVFTVLAFIITNNGSG HNVSGLRYKEYQLKDYSSWFLKQLNNTDNWKRLKSCLVKSQDCNNLAKQYKTLKQYKM AKLTPIEAGCCRPPSECGYPVVNASHYDLSFHPISSNNDCKLYKNSRAVKCYNCDSCK AGVAQYMKTEWRVVAIFNSALFVVLSIIYFVGCCARRNAAQSQSKV" gene complement(31887165..31893185) /locus_tag="TCM_016217" /note="dbxref CacaoGD:Thecc1EG016217" mRNA complement(join(31887165..31887716,31888229..31888297, 31888919..31889026,31889139..31889228,31889332..31889403, 31889657..31889743,31890011..31890082,31890323..31890430, 31890509..31890808,31890894..31890983,31891085..31891187, 31891266..31891359,31891587..31892325,31892462..31893185)) /locus_tag="TCM_016217" /product="Nucleic acid-binding, OB-fold-like protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011180" /inference="similar to AA sequence:ricco:30190.m011180" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04382t00001" mRNA complement(join(31887269..31887716,31888919..31889028, 31889139..31889228,31889332..31889407,31889657..31889743, 31890009..31890082,31890323..31890430,31890509..31890808, 31890894..31890983,31891085..31891187,31891266..31891359, 31891587..31892325,31892462..31892722)) /locus_tag="TCM_016217" /product="Nucleic acid-binding, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011180" /inference="similar to AA sequence:ricco:30190.m011180" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10527t2; inference alignment:Newbler:10:TSA:cgbaB_g04382t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10044t1" CDS complement(join(31887642..31887716,31888229..31888297, 31888919..31889026,31889139..31889228,31889332..31889403, 31889657..31889743,31890011..31890082,31890323..31890430, 31890509..31890808,31890894..31890983,31891085..31891187, 31891266..31891359,31891587..31892325,31892462..31892698)) /locus_tag="TCM_016217" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011180" /codon_start=1 /product="Nucleic acid-binding, OB-fold-like protein, putative isoform 1" /protein_id="EOY24676.1" /db_xref="TAIR:AT1G12800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUE6" /translation="MNGLACASATTAAASSFSVNKFLLFPSASPSRAGPKRGAKRVSF RIFAAKEEPKFDKWDQMELKFGRLLGEDPKLTLAKIMGRKANPEASYIEIEKAFHKNK GKIVEVEEVPFDVEKKSPTSSSDSLNLVRPVPKKGIKFKADGNPAVSEIKRPTLSDGK TVDSAKKGRVPNVILRKPTLINEDDVENLPRFRIKPNLSLKMRNEKAKDHFSEMTLLR KPEPMSVDTSLDKKQDSEGSVGLEKEKEVEDRIGDFTILEKSEQSIHANIREMQELFE DLEIEGQRLEAEIEANMLANATENTSQESLEAGHSSIPKKPERKDDSISGMQPVELSN RVSTEESSTGPSIEAALQGKPKRLDQSVKETSNSSRAQTVPINPEDYGDLPSVSPQED SDWTRVEHLLKTGERAEVELISSSTRGFVVSFGSLIGFLPYRNLAAKWKFLAFESWLR QKGLDLAAYKQNLGVIGSSDIMSKNSSLVSNSDMENNQQFEGKLSPDMNLEDLLKIYD QEKLKFLSSFVGQRVKVNVLMADRKFRKLIVSLRPKAKEELVEKKRNVMAKLRVGDVV KCCIKKITYFGIFVEVEGVPALIHQTEVSWDATLDPASYFKIGQIVEAKVHQLDFTLE RVFLSLKEITPDPLIEALDSVVGDRDNLDGRLQAAEADSEWPDVESLIKELQQIEGVQ SVSKGRFFLSPGLAPTFQVYMASMFENQYKLLARSGNKVQEIIVLASLDKEEMKSTIL SCTNRVI" mRNA complement(join(31888936..31889026,31889139..31889228, 31889332..31889357,31890018..31890082,31890323..31890430, 31890509..31890808,31890894..31890983,31891085..31891187, 31891266..31891359,31891587..31892325,31892462..31892829)) /locus_tag="TCM_016217" /product="Nucleic acid-binding, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30190.m011180" /inference="similar to AA sequence:ricco:30190.m011180" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1105t9_C1; inference alignment:Newbler:10:TSA:cgbaB_g04382t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10044t1" CDS complement(join(31889212..31889228,31889332..31889357, 31890018..31890082,31890323..31890430,31890509..31890808, 31890894..31890983,31891085..31891187,31891266..31891359, 31891587..31892325,31892462..31892698)) /locus_tag="TCM_016217" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m011180" /codon_start=1 /product="Nucleic acid-binding, putative isoform 3" /protein_id="EOY24678.1" /db_xref="TAIR:AT1G12800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUE6" /translation="MNGLACASATTAAASSFSVNKFLLFPSASPSRAGPKRGAKRVSF RIFAAKEEPKFDKWDQMELKFGRLLGEDPKLTLAKIMGRKANPEASYIEIEKAFHKNK GKIVEVEEVPFDVEKKSPTSSSDSLNLVRPVPKKGIKFKADGNPAVSEIKRPTLSDGK TVDSAKKGRVPNVILRKPTLINEDDVENLPRFRIKPNLSLKMRNEKAKDHFSEMTLLR KPEPMSVDTSLDKKQDSEGSVGLEKEKEVEDRIGDFTILEKSEQSIHANIREMQELFE DLEIEGQRLEAEIEANMLANATENTSQESLEAGHSSIPKKPERKDDSISGMQPVELSN RVSTEESSTGPSIEAALQGKPKRLDQSVKETSNSSRAQTVPINPEDYGDLPSVSPQED SDWTRVEHLLKTGERAEVELISSSTRGFVVSFGSLIGFLPYRNLAAKWKFLAFESWLR QKGLDLAAYKQNLGVIGSSDIMSKNSSLVSNSDMENNQQFEGKLSPDMNLEDLLKIYD QEKLKFLSSFVGQRVKVNVLMADRKFRKLIVSLRPKAKEELVEKKRNVMAKLRVGDVV KCCIKKITYFGIFIFIIEGDNARSTD" CDS complement(join(31889722..31889743,31890009..31890082, 31890323..31890430,31890509..31890808,31890894..31890983, 31891085..31891187,31891266..31891359,31891587..31892325, 31892462..31892698)) /locus_tag="TCM_016217" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011180" /codon_start=1 /product="Nucleic acid-binding, putative isoform 2" /protein_id="EOY24677.1" /db_xref="TAIR:AT1G12800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUE6" /translation="MNGLACASATTAAASSFSVNKFLLFPSASPSRAGPKRGAKRVSF RIFAAKEEPKFDKWDQMELKFGRLLGEDPKLTLAKIMGRKANPEASYIEIEKAFHKNK GKIVEVEEVPFDVEKKSPTSSSDSLNLVRPVPKKGIKFKADGNPAVSEIKRPTLSDGK TVDSAKKGRVPNVILRKPTLINEDDVENLPRFRIKPNLSLKMRNEKAKDHFSEMTLLR KPEPMSVDTSLDKKQDSEGSVGLEKEKEVEDRIGDFTILEKSEQSIHANIREMQELFE DLEIEGQRLEAEIEANMLANATENTSQESLEAGHSSIPKKPERKDDSISGMQPVELSN RVSTEESSTGPSIEAALQGKPKRLDQSVKETSNSSRAQTVPINPEDYGDLPSVSPQED SDWTRVEHLLKTGERAEVELISSSTRGFVVSFGSLIGFLPYRNLAAKWKFLAFESWLR QKGLDLAAYKQNLGVIGSSDIMSKNSSLVSNSDMENNQQFEGKLSPDMNLEDLLKIYD QEKLKFLSSFVGQRVKVNVLMADRKFRKLIVSLRPKAKEELVEKKRNVMAKLRVGDVV KCCIKKITYFGIFVEVLKACLL" mobile_element 31893119..31893298 /note="source:scaffold_3_CACTA_0377 4739 4910" /mobile_element_type="transposon:TIR/CACTA" gene complement(31893511..31895223) /locus_tag="TCM_016218" /note="dbxref CacaoGD:Thecc1EG016218" mRNA complement(join(31893511..31894086,31894325..31894414, 31894520..31894548,31894659..31894755,31894953..31895223)) /locus_tag="TCM_016218" /product="GATA type zinc finger transcription factor family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011181" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005377t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019807001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10697t00001" CDS complement(join(31893778..31894086,31894325..31894414, 31894520..31894548,31894659..31894755,31894953..31895087)) /locus_tag="TCM_016218" /note="paralog of Thecc1EG005377t1" /codon_start=1 /product="GATA type zinc finger transcription factor family protein, putative" /protein_id="EOY24679.1" /db_xref="Phytozome:GSVIVT01019807001" /db_xref="TAIR:AT2G45800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PII9" /translation="MAFSGTTEKCKACDKTVHFIDLLSADGVSYHKTCFKCSHCNGLL VMSSYCSMEGVLYCKPHFEQLFKETGSYTKKFQSGKSDKPNGLARAPSRLASFFSGTQ DRCGVCNKTAYPLEKVTVEGENYHKSCFRCCHGGCFLNPSSYAALDGILYCKHHFAQL FKEKGSYSHLTKTASLKKNSAGASSEQNSEAESESESKPGDEPKPEAEENPAEAAAQD Q" gene complement(31895802..31900052) /locus_tag="TCM_016219" /note="dbxref CacaoGD:Thecc1EG016219" mRNA complement(join(31895802..31896428,31896565..31896646, 31897014..31897101,31897190..31897231,31897334..31897493, 31897921..31898042,31898346..31898591,31899936..31900052)) /locus_tag="TCM_016219" /product="Remorin family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12450.1.2" /inference="similar to AA sequence:Phytozome:Sb06g023630.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc3821t4" CDS complement(join(31896228..31896428,31896565..31896646, 31897014..31897101,31897190..31897231,31897334..31897493, 31897921..31898042,31898346..31898475)) /locus_tag="TCM_016219" /codon_start=1 /product="Remorin family protein" /protein_id="EOY24680.1" /db_xref="Phytozome:Sb06g023630.1" /db_xref="TAIR:AT5G23750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P93788" /translation="MGEEEANKMEASEPKEQQPVKEEKDAAAKTDVAEEKSLIPVPEI KNCSEKEKGVLKIRFGFHISTFESAFTFMESWVQKIIVIAGLHLPKHANLMPDELGHN VPWVACSGKLLVANNIFHFQDTESIMFIEMLIDLTKAAAVATEKSPNNRDSVLARVET EKRLALLKAWEENEKAKVENKAHKKISAIGSWENTKKAGVEAQLKKIEEQLEKKKAEY AEKMKNRVAEIHREAEEKRAMIEAKRGEDFLKIEETAAKFRATGYTPKKFLGCFSS" mobile_element 31901529..31901795 /note="source:scaffold_5_CACTA_0607 11 281" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31902052..31902193) /note="source:scaffold_9_CACTA_0934 14615 14756" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31902184..31902473 /note="source:CACAO_hAT_E410_scaffold_1 1424 1713" /mobile_element_type="transposon:TIR/hAT" mobile_element 31902467..31902926 /note="source:scaffold_5_CACTA_0607 3929 4408" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31902927..31903193 /note="source:scaffold_5_CACTA_0607 560 831" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31904035..31904520 /note="source:CACAO_on_E69_scaffold_9 103 592" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31904073..31904603) /note="source:scaffold_4_CACTA_0511 13195 13731" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31904325..31904646 /note="source:CACAO_on_E33_A_scaffold_3 863 1181" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(31905750..31905865) /note="source:scaffold_4_CACTA_0511 2484 2587" /mobile_element_type="transposon:TIR/CACTA" gene 31906010..31906572 /locus_tag="TCM_016220" /note="dbxref CacaoGD:Thecc1EG016220" mRNA join(31906010..31906080,31906206..31906572) /locus_tag="TCM_016220" /product="Nucleotide binding, putative" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1747t1_C2" CDS join(31906063..31906080,31906206..31906454) /locus_tag="TCM_016220" /codon_start=1 /product="Nucleotide binding, putative" /protein_id="EOY24681.1" /translation="MGPTPMATAYYSGIIQMDVFIPEEYVIRRRIEKRAAAIAGKRPN KVPEATKRTDKEKKSLPPPFRLDSNDFLVSGGIGENLDFGCFSA" gene complement(31907579..31908231) /locus_tag="TCM_016221" /note="dbxref CacaoGD:Thecc1EG016221" mRNA complement(31907579..31908231) /locus_tag="TCM_016221" /product="Nuclear transcription factor Y subunit C-9" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020537t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s12460.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc4192t1_C2" CDS complement(31907767..31908135) /locus_tag="TCM_016221" /note="paralog of Thecc1EG020537t2" /codon_start=1 /product="Nuclear transcription factor Y subunit C-9" /protein_id="EOY24682.1" /db_xref="Phytozome:POPTR_0003s12460.1" /db_xref="TAIR:AT1G54830.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKK3" /translation="MRQAGTYSGILSGGISGRTGPHSLPLARIKKIMKKSGDDVKMIS GEAPIVFSKACELFIKELTQRSWMVTMQGKRRTLNKEDVTSAVVATDIFDFLVNLVSE DSGDTVDATPLEMDTFTSSS" gene 31910410..31915021 /locus_tag="TCM_016223" /note="dbxref CacaoGD:Thecc1EG016223" mRNA join(31910410..31911626,31914115..31915021) /locus_tag="TCM_016223" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031495" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400031495" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10499t1" CDS join(31910474..31911626,31914115..31914131) /locus_tag="TCM_016223" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24683.1" /db_xref="Phytozome:PGSC0003DMP400031495" /translation="MMADWSELPGDLLVLIAKKLVSVEEFLAFGVVCTSWRSAADKSN FEPSQQQPPWLMLSKRKHKRFREFFSLTTHKIYKFSIPDDIGKKCLASQGWLFAIGKT FDINLIHPLSGARVPLPQMHTLKGLNCLFDSPASLCFHFIYKAILSTNNNPNELRVAI IYGGSLNRVAVCKVGDETWKTVEAYPSCACNDLVYYEGRFYGIDILARVWVFDHEVLN AQVISIVPREFLPNYGDTREPWQYFERFYMVESAGSLLVVSREGKACGHDYGHGTMAF RVFEVDVEKGMWKWVNSLGNRALFLGRNSSFSIQVTSRSGCKADCIYFTDDCFSSYSG SQKADGKDQGIYNMRDGSFEQHFTGESYDSDNPPIWIEPTFEPKIYTMMSNLLKQ" mobile_element 31913543..31913595 /note="source:INTACT456_F19_scaffold_9-int 1935 1987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31916406..31916813 /note="source:CACAO_on_E501_scaffold_3 1 408" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 31917865..31918354 /note="source:CACAO_Again_on_E17_scaffold_1 10 493" /mobile_element_type="transposon:TIR/hAT" gene 31919871..31926305 /locus_tag="TCM_016224" /note="dbxref CacaoGD:Thecc1EG016224" mRNA join(31919871..31920284,31920587..31920787, 31920873..31920995,31921143..31921180,31921282..31921390, 31921571..31923811,31924031..31924186,31924553..31924644, 31924772..31925534,31925924..31926305) /locus_tag="TCM_016224" /product="Myosin heavy chain-related protein, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011187" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015163t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s12470.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1541t1" CDS join(31920207..31920284,31920587..31920787, 31920873..31920995,31921143..31921180,31921282..31921390, 31921571..31923811,31924031..31924186,31924553..31924644, 31924772..31925009) /locus_tag="TCM_016224" /note="paralog of Thecc1EG015163t1" /codon_start=1 /product="Myosin heavy chain-related protein, putative" /protein_id="EOY24684.1" /db_xref="Phytozome:POPTR_0003s12470.1" /db_xref="TAIR:AT1G63300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUE1" /translation="MFKSARWRSEKNRIKSVFKLQFHATQVTQLNVQALMISVVPGDG GKPTTKLDKATVQDGNCRWENPVYETVKFVREPKTGKINEKIYHFILSTGLGKGGLVG EASVNFAVYAEAIKTSTVSLPLKNSNSKAILHVSIQRLQENADQREVAEIEDASIKSQ DRSLKAQLSNGDADESTKNDPVEDAPFSKTTHNVELRGNHRGSNGSDITISSSDSSGL NTPRELGMRNDNNNQDPPTYLSSMNHTSVTPKPTPIASTTIYEEWSAGSDHGMSTDDS NSSQDTFPRENSQHASDNEIEKLKNELIALSRHADVSDLELQTLRKQIVKESKRGQDL SREVVTLKEERDELKLECEKLKAFQKRMDDGKTESRVQFESGDPWVLVEEIRQELNYE KHLNSNLRLQLQKTQESNAELILAVQDLEEMLDAKNMEISNPPNKSGSYDNAEVFRGT IGRSDTDEDEEQRALEQLVKEHRDTKETSVLEQKIMDLYSEIEIYRRDKDELEAQMEQ LALDYEILKQENHDISYKLEQSQLQEQLKLQYECPSSFANINELETQIECLESELNKK SKEFSDSLATINELETHIKSLEEDLEKQAQLFEMDLESITRAKVEQEQRAIQAEEALR TTRLKNANTAERLQEEFKRLSMQMASTFDANEKVATKALTEASDLRLLKNQLEELLKK AKEELQSVREDYEAKLCNLSNQVNLKSNQIEQMLKQIDDKSKQLEHQKKHEEEASGAF SQEMCSLKAEIDKLTTENKFLCEQAEQAENLRLELERTQSFAKETDVQMQRGNLERNE LANTIALLKKEAAKSLEELQRMSHLKDEKEAAVESLQSELDNVKTLCNKLKHSLFEDE VEKEKLRKQVVQLKGDLKKKEEAFTGMEKKLKESNGRAAGSDGTRTTLRNNKPSMVPR GPKEVASLREKIKLLEGQIKLKETALETSTNVFLEKERDLQKKINELEFRVEELNEQS TTLCQYQFKQVFKDAKEVGVTSDGKACISKQNGNTEPSVKSNDNLSTKEQKPSIVNKD CNQDELIAELASLKERNQSMENELKDMQERYSEISLKFAEVEGERQQLVMTVRNLKNA KKS" gene complement(31926264..31927495) /locus_tag="TCM_016225" /note="dbxref CacaoGD:Thecc1EG016225" mRNA complement(join(31926264..31926756,31926862..31927098, 31927206..31927495)) /locus_tag="TCM_016225" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene32444" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029242t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019781001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10511t1" CDS complement(join(31926622..31926756,31926862..31927098, 31927206..31927466)) /locus_tag="TCM_016225" /note="paralog of Thecc1EG029242t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24685.1" /db_xref="Phytozome:GSVIVT01019781001" /db_xref="TAIR:AT1G63410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWG8" /translation="MIKVHPLAAAAAAAAVPSSSSSSSYVTSRRETFTVWMKSLVMQG NGCTVYNENGEIVYRVDNYDKKCSDEVCLMDLQGKVLFTILRKNQWFFKRWVGDRSND LNLNSEKLQFEVRKNFRNILKGNLSCQVIIICCDNGQASCYTITGMAGKSAFKITQGN GKLAAEAKRKQSSSGVLLGEDVLTLEVEQHVDHSLIMALVTVYGLIHHRL" gene complement(31930894..31931972) /locus_tag="TCM_016226" /note="dbxref CacaoGD:Thecc1EG016226" mRNA complement(join(31930894..31931219,31931335..31931553, 31931659..31931972)) /locus_tag="TCM_016226" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016225t1" /inference="similar to AA sequence:ricco:30190.m011189" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13144t00001" CDS complement(join(31931085..31931219,31931335..31931553, 31931659..31931892)) /locus_tag="TCM_016226" /note="dbxref ricco:30190.m011189; paralog of Thecc1EG016225t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24686.1" /db_xref="TAIR:AT1G63410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6TF94" /translation="MAKVHPQASVSDPCSMGSAGRETFTIWMKSLVCHTNGCTVFDSE GEIVYRVENYDSKGSSEVHLMDLRGKVLFTILKKKLQLFGCWNGHRGNFTGTKKEKPC FQVKKYWRILRRDLAYQVTMGLNKYWIVSLGRNKQGFKIVNIAGDIVAEVKQKQLSSG VVLGDDVLTLEVEPYIDHSLIVALVTVYGLINRRL" gene complement(31935084..31936296) /locus_tag="TCM_016227" /note="dbxref CacaoGD:Thecc1EG016227" mRNA complement(join(31935084..31935455,31935559..31935637, 31936177..31936296)) /locus_tag="TCM_016227" /product="Copper transport protein family" /inference="alignment:exonerate- protein:2:ricco:30147.m013742" /inference="similar to AA sequence:ricco:30147.m013742" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage" CDS complement(join(31935274..31935455,31935559..31935637, 31936177..31936212)) /locus_tag="TCM_016227" /note="dbxref ricco:30147.m013742" /codon_start=1 /product="Copper transport protein family" /protein_id="EOY24687.1" /translation="MSPIDVGWTTNKKVVLKIMTMNDEKTKKKALETVANIYGVDSIA ADLKEQKLTIIGEMDTVAIAKKLKKIGKVEIVTVGPAKEEKKDEKKDEKDDEMN" gene 31937030..31940630 /locus_tag="TCM_016228" /note="dbxref CacaoGD:Thecc1EG016228" mRNA join(31937030..31937527,31937757..31938250, 31938655..31938847,31938925..31938989,31939074..31939284, 31939556..31940630) /locus_tag="TCM_016228" /product="Glycosyltransferase isoform 2" /inference="alignment:exonerate- protein:2:frave:gene32446.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015170t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s12500.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b015680t1a2; inference alignment:Newbler:10:TSA:cgbaB_g05841t00001" mRNA join(31937030..31937527,31937685..31938250, 31938655..31938847,31938925..31938989,31939074..31939284, 31939556..31940556) /locus_tag="TCM_016228" /product="Glycosyltransferase isoform 1" /inference="alignment:exonerate- protein:2:frave:gene32446.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015170t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s12500.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05841t00001" mRNA join(31937064..31937527,31937757..31938250, 31938655..31938847,31938922..31938989,31939074..31939284, 31939556..31940630) /locus_tag="TCM_016228" /product="Glycosyltransferase isoform 3" /inference="alignment:exonerate- protein:2:frave:gene32446.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015170t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s12500.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10531t2; inference alignment:Newbler:10:TSA:cgbaB_g05841t00001" CDS join(31937378..31937527,31937685..31938250, 31938655..31938847,31938925..31938989,31939074..31939284, 31939556..31939921) /locus_tag="TCM_016228" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015170t1" /codon_start=1 /product="Glycosyltransferase isoform 1" /protein_id="EOY24688.1" /db_xref="Phytozome:POPTR_0003s12500.1" /db_xref="TAIR:AT5G23850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4YF69" /translation="MLHGSGLARHVLEMPFWRPPLKRKPATTAALLFLTVLLVAAFTS SSWIDTSSFLTENLRNKTIIISEKPKIPIQKIEIPLGCTSSKNQTQTCPTNYPKTFQT EDLDPSSNHVCPDYFRWIHEDLRPWKTSGITRDMVERANRTATFRLVIIGGKAYVENY RKAIQTRDVFTIWGVLQLLRKYPGRLPDLEIMFDTEDKPVVRSRDYRGPNATGPPPLF RYCGDKETLDIVFPDWSFWGWAEINIKPWHSILKDVRQGNNQTKWIDREPYAYWKGNP FVDGKRQDLLKCNVSDQQDWNARLFIQDWILEGQQGFKQSNVADQCTYRYKIYIEGYA WSVSEKYILACDSVTLIVQPQYYDFFMRSMQPVEHYWPIRDDDKCRSLKFAVDWGNNH KKKAQEIGKAASSFMEEQLKMDYIYDYMYHLLNEYAKLLKFEPRIPEGAVELCSEVMA CHAEGIEGRKKKFMMESLVKGPSVSSPCTLPPYEPQALAALVRRKINSIMQVKKWEKG YWDSLNKQ" CDS join(31937378..31937527,31937757..31938250, 31938655..31938847,31938922..31938989,31939074..31939284, 31939556..31939921) /locus_tag="TCM_016228" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015170t1" /codon_start=1 /product="Glycosyltransferase isoform 3" /protein_id="EOY24690.1" /db_xref="Phytozome:POPTR_0003s12500.1" /db_xref="TAIR:AT5G23850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4YF69" /translation="MLHGSGLARHVLEMPFWRPPLKRKPATTAALLFLTVLLVAAFTS SSWIDTKIEIPLGCTSSKNQTQTCPTNYPKTFQTEDLDPSSNHVCPDYFRWIHEDLRP WKTSGITRDMVERANRTATFRLVIIGGKAYVENYRKAIQTRDVFTIWGVLQLLRKYPG RLPDLEIMFDTEDKPVVRSRDYRGPNATGPPPLFRYCGDKETLDIVFPDWSFWGWAEI NIKPWHSILKDVRQGNNQTKWIDREPYAYWKGNPFVDGKRQDLLKCNVSDQQDWNARL FIQQDWILEGQQGFKQSNVADQCTYRYKIYIEGYAWSVSEKYILACDSVTLIVQPQYY DFFMRSMQPVEHYWPIRDDDKCRSLKFAVDWGNNHKKKAQEIGKAASSFMEEQLKMDY IYDYMYHLLNEYAKLLKFEPRIPEGAVELCSEVMACHAEGIEGRKKKFMMESLVKGPS VSSPCTLPPYEPQALAALVRRKINSIMQVKKWEKGYWDSLNKQ" CDS join(31937378..31937527,31937757..31938250, 31938655..31938847,31938925..31938989,31939074..31939284, 31939556..31939921) /locus_tag="TCM_016228" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015170t1" /codon_start=1 /product="Glycosyltransferase isoform 2" /protein_id="EOY24689.1" /db_xref="Phytozome:POPTR_0003s12500.1" /db_xref="TAIR:AT5G23850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4YF69" /translation="MLHGSGLARHVLEMPFWRPPLKRKPATTAALLFLTVLLVAAFTS SSWIDTKIEIPLGCTSSKNQTQTCPTNYPKTFQTEDLDPSSNHVCPDYFRWIHEDLRP WKTSGITRDMVERANRTATFRLVIIGGKAYVENYRKAIQTRDVFTIWGVLQLLRKYPG RLPDLEIMFDTEDKPVVRSRDYRGPNATGPPPLFRYCGDKETLDIVFPDWSFWGWAEI NIKPWHSILKDVRQGNNQTKWIDREPYAYWKGNPFVDGKRQDLLKCNVSDQQDWNARL FIQDWILEGQQGFKQSNVADQCTYRYKIYIEGYAWSVSEKYILACDSVTLIVQPQYYD FFMRSMQPVEHYWPIRDDDKCRSLKFAVDWGNNHKKKAQEIGKAASSFMEEQLKMDYI YDYMYHLLNEYAKLLKFEPRIPEGAVELCSEVMACHAEGIEGRKKKFMMESLVKGPSV SSPCTLPPYEPQALAALVRRKINSIMQVKKWEKGYWDSLNKQ" gene 31945610..31950801 /locus_tag="TCM_016230" /note="dbxref CacaoGD:Thecc1EG016230" mRNA join(31945610..31946231,31946447..31946585, 31946703..31946774,31946881..31947024,31947116..31947265, 31947828..31947944,31948029..31948093,31948395..31948646, 31948739..31948944,31949077..31949209,31949304..31949461, 31949750..31949965,31950082..31950801) /locus_tag="TCM_016230" /product="Leucine-rich repeat protein kinase family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011191" /inference="similar to AA sequence:ricco:30190.m011191" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10576t3" CDS join(31946147..31946231,31946447..31946585, 31946703..31946774,31946881..31947024,31947116..31947265, 31947828..31947944,31948029..31948093,31948395..31948646, 31948739..31948944,31949077..31949209,31949304..31949461, 31949750..31949965,31950082..31950327) /locus_tag="TCM_016230" /note="dbxref ricco:30190.m011191" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY24691.1" /db_xref="TAIR:AT1G63430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKK0" /translation="MKSYIYFLLLFLASGVAFVTCAPFPTNEVWALTTFKEAIYEDPH LVLSNWNALDADPCEWSGITCNQERQHVIKINISSSSLKGFLAPEMGQITYLQELTLR ENNLIGIIPKELGMLKFLKVLDLGMNQLTGPIPPELGNLSSVMKINLQSNGLTGSLPA ELGNLKYLQELRLDRNKLHGTVPADSNSAFTAKMHGMYASGSNLTGLCRSSQLKVVDV SYNFLVGGIPKCLEYLPSTSFQGNCLQDKDAKQRPTTQCGGAMLSRSHQAPSPKHRPA EDVAKHQKASKPAWLLALEIVTGTMVGSLFLVALLTAFQRCNSKSAIIIPWKKSGSEK EHVTVYVDSELLKDVTKFSRQELEVACEDFSNIIGSSPDSLVYKGTMKGGPEIAVISL CIKEEHWTGYLELYFQREVADLARLNHENVGILLGYCRESTPFTRMLVFEYASNGTLY EHLHYGEGSQLSWTRRMRIIQGIARGLKYLHTEPEPPFTISELNSSAVYLTEDFSPKL VDFESWKTILARSEKNSGSIGSNGAICLLPNSVEKRHLDIQGNIHAFGVLLLEIISGR PPFCKDRGCLIDWAKDYLALPEVMSYIVDPALKQFRYDDLKVICEVISLCIHPDFSNR PAMQEISLMLESGIDTSVSVELKSSSLAWAELALSS" gene complement(31950952..31954468) /locus_tag="TCM_016231" /note="dbxref CacaoGD:Thecc1EG016231" mRNA complement(join(31950952..31951585,31951732..31951851, 31952027..31952195,31952379..31953432,31953657..31954468)) /locus_tag="TCM_016231" /product="RNA-binding protein nob1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011192" /inference="similar to AA sequence:ricco:30190.m011192" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04808t00001" mRNA complement(join(31951083..31951587,31952387..31953432, 31953657..31954004)) /locus_tag="TCM_016231" /product="RNA-binding protein nob1, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30190.m011192" /inference="similar to AA sequence:ricco:30190.m011192" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc123t4; inference alignment:Newbler:10:TSA:cgbaP2_g04808t00001" mRNA complement(join(31951162..31951219,31951437..31951585, 31951732..31951851,31952027..31952195,31952379..31953432, 31953657..31954003)) /locus_tag="TCM_016231" /product="RNA-binding protein nob1, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011192" /inference="similar to AA sequence:ricco:30190.m011192" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc302t6; inference alignment:Newbler:10:TSA:cgbaP2_g04808t00001" CDS complement(join(31951213..31951219,31951437..31951585, 31951732..31951851,31952027..31952195,31952379..31953432, 31953657..31953996)) /locus_tag="TCM_016231" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011192" /codon_start=1 /product="RNA-binding protein nob1, putative isoform 2" /protein_id="EOY24693.1" /db_xref="TAIR:AT5G41190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC94" /translation="MEDSGAPAPNPNPASCWSNVLKSQPPKPQTQKQTAATTQLFVES CKSTKGIAVAVVDANAVIEGGEKLNNSADRFVTVPEVLAEIRDPVSRHRLAFIPFSID SMEPSSDALNKVIKFARATGDLQTLSDVDLKLIALTYTLEAQIHGTNHIRDAPPPVHV VNVKRLPERDLPGWGSNVPNLDEWEALEREAEGGTNSNSRILPLKDLNMNTLPSDNGS EDGSVEIKSETHSENQEDVEHGFRRPRRYLPQKKEVKIEGKKMVADGIDASQGQIDDN GDNWQPAVSRSTHRRYLRRKARREYYEALVEKDCQEDMEKSMDKNNVEDAHSGNGILE ETERAEEKKGDEDLSSILKQMRLEEDSLEALQEAEEVEITVEANVNLSVEGNKMDLVN EELDQLEMSSQTNETVDASYTDDVSCEQSWMLRSLSESSVACVTGDFAMQNVILQMGL RLLAPGGMQIRQLHRWILKCHACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGIVL ASHRPRISLRGTKFSLPLPQGGRDAITKNLILREDQLPQKFLYPKTKKKVNKQGDDDL FMGVDTFTHHTDKRAPLQPPVRKALAVFTGKRNPNDNHYSRSKHNN" CDS complement(join(31951433..31951585,31951732..31951851, 31952027..31952195,31952379..31953432,31953657..31953996)) /locus_tag="TCM_016231" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011192" /codon_start=1 /product="RNA-binding protein nob1, putative isoform 1" /protein_id="EOY24692.1" /db_xref="TAIR:AT5G41190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC94" /translation="MEDSGAPAPNPNPASCWSNVLKSQPPKPQTQKQTAATTQLFVES CKSTKGIAVAVVDANAVIEGGEKLNNSADRFVTVPEVLAEIRDPVSRHRLAFIPFSID SMEPSSDALNKVIKFARATGDLQTLSDVDLKLIALTYTLEAQIHGTNHIRDAPPPVHV VNVKRLPERDLPGWGSNVPNLDEWEALEREAEGGTNSNSRILPLKDLNMNTLPSDNGS EDGSVEIKSETHSENQEDVEHGFRRPRRYLPQKKEVKIEGKKMVADGIDASQGQIDDN GDNWQPAVSRSTHRRYLRRKARREYYEALVEKDCQEDMEKSMDKNNVEDAHSGNGILE ETERAEEKKGDEDLSSILKQMRLEEDSLEALQEAEEVEITVEANVNLSVEGNKMDLVN EELDQLEMSSQTNETVDASYTDDVSCEQSWMLRSLSESSVACVTGDFAMQNVILQMGL RLLAPGGMQIRQLHRWILKCHACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGIVL ASHRPRISLRGTKFSLPLPQGGRDAITKNLILREDQLPQKFLYPKTKKKVNKQGDDDL FMGVDTFTHHTDKRAPLQPPVRKALAVFTGKRNPNDNHYSRSKHK" CDS complement(join(31951507..31951587,31952387..31953432, 31953657..31953996)) /locus_tag="TCM_016231" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m011192" /codon_start=1 /product="RNA-binding protein nob1, putative isoform 3" /protein_id="EOY24694.1" /db_xref="TAIR:AT5G41190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RC94" /translation="MEDSGAPAPNPNPASCWSNVLKSQPPKPQTQKQTAATTQLFVES CKSTKGIAVAVVDANAVIEGGEKLNNSADRFVTVPEVLAEIRDPVSRHRLAFIPFSID SMEPSSDALNKVIKFARATGDLQTLSDVDLKLIALTYTLEAQIHGTNHIRDAPPPVHV VNVKRLPERDLPGWGSNVPNLDEWEALEREAEGGTNSNSRILPLKDLNMNTLPSDNGS EDGSVEIKSETHSENQEDVEHGFRRPRRYLPQKKEVKIEGKKMVADGIDASQGQIDDN GDNWQPAVSRSTHRRYLRRKARREYYEALVEKDCQEDMEKSMDKNNVEDAHSGNGILE ETERAEEKKGDEDLSSILKQMRLEEDSLEALQEAEEVEITVEANVNLSVEGNKMDLVN EELDQLEMSSQTNETVDASYTDDVSCEQSWMLRSLSESSVACVTGDFAMQNVILQMGL RLLAPGGMQIRQRGMMIFSWVWTLSLTILIKGHLSSLP" gene complement(31954719..31956106) /locus_tag="TCM_016232" /note="dbxref CacaoGD:Thecc1EG016232" mRNA complement(join(31954719..31955148,31955231..31955496, 31955994..31956106)) /locus_tag="TCM_016232" /product="Actin depolymerizing factor 8" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g032550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005362t1" /inference="similar to AA sequence:ricco:30190.m011193" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10539t1" CDS complement(join(31954998..31955148,31955231..31955496, 31955994..31955996)) /locus_tag="TCM_016232" /note="dbxref ricco:30190.m011193; paralog of Thecc1EG005362t1" /codon_start=1 /product="Actin depolymerizing factor 8" /protein_id="EOY24695.1" /db_xref="TAIR:AT4G00680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UC71" /translation="MANSASGMAVNDECKRKFLELKAKRSYRFIVFKIEEKIQQVVVE KLGGPSDSYDDLSASLPANECRYAVYDFDFTTDENCQKSKIFFIAWSPDTSRVRSKML YASSKDRFRRELDGVQVELQATDPSEMSFDIVKGRAL" gene 31957811..31960950 /locus_tag="TCM_016233" /note="dbxref CacaoGD:Thecc1EG016233" mRNA join(31957811..31958298,31958372..31958641, 31959842..31960950) /locus_tag="TCM_016233" /product="Tubulin beta 8" /inference="alignment:exonerate- protein:2:TAIR:AT1G20010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021786t1" /inference="similar to AA sequence:ricco:30190.m011194" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10072t1" CDS join(31957905..31958298,31958372..31958641, 31959842..31960515) /locus_tag="TCM_016233" /note="dbxref ricco:30190.m011194; paralog of Thecc1EG021786t1" /codon_start=1 /product="Tubulin beta 8" /protein_id="EOY24696.1" /db_xref="TAIR:AT5G23860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q01GL4" /translation="MREILHVQGGQCGNQIGAKFWEVVCTEHGIDSTGRYHGDSELQL ERINVYYNEASCGRFVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWA KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMINVQ NKNSSYFVEWIPNNVKSTVCDIPPNGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEYEDEEEEYEEET" gene complement(31961112..31963710) /locus_tag="TCM_016234" /note="dbxref CacaoGD:Thecc1EG016234" mRNA complement(join(31961112..31961267,31961498..31961700, 31961953..31962139,31962264..31962337,31962445..31962675, 31962780..31962866,31962987..31963178,31963282..31963331, 31963545..31963710)) /locus_tag="TCM_016234" /product="Serine racemase isoform 1" /inference="alignment:exonerate-protein:2:frave:gene32450" /inference="similar to AA sequence:Phytozome:GSVIVT01019772001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10674t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10674t1" CDS complement(join(31961245..31961267,31961498..31961700, 31961953..31962139,31962264..31962337,31962445..31962675, 31962780..31962866,31962987..31963150)) /locus_tag="TCM_016234" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Serine racemase isoform 1" /protein_id="EOY24697.1" /db_xref="Phytozome:GSVIVT01019772001" /db_xref="TAIR:AT4G11640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2PGG3" /translation="MEVNKGKYAADLSSIREAQARINSFIHKTPVMTSESLDAISGRR LFFKCECFQKGGAFKFRGACNAVFSLDDHQAAKGVVTHSSGNHAAALALAAKLRGIPA HIVIPKNAPQCKVQNVVRYGGQVIWSEATVPSREKTATKVLQETGAVLIHPYNDGRII SGQGTISLELLEQAPEIDTIIVPISGGGLISGVALAAKSINPAIRVLAAEPKGANDAA QSKAAGRIVTLPETNTVADGLRAFLGELTWPIVRDFVDDIITVDDTEIIEAMRLCYEI LKVAVEPSGAIGLAAVLSDSFRNNPAWKDCNQIGIILSGGIGNHRT" mRNA complement(join(31961354..31961700,31961953..31962139, 31962264..31962337,31962445..31962675,31962780..31962866, 31962987..31963178,31963282..31963331,31963558..31963710)) /locus_tag="TCM_016234" /product="Serine racemase isoform 2" /inference="alignment:exonerate-protein:2:frave:gene32450" /inference="similar to AA sequence:Phytozome:GSVIVT01019772001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b015686t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10674t1" CDS complement(join(31961454..31961700,31961953..31962139, 31962264..31962337,31962445..31962675,31962780..31962866, 31962987..31963150)) /locus_tag="TCM_016234" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Serine racemase isoform 2" /protein_id="EOY24698.1" /db_xref="Phytozome:GSVIVT01019772001" /db_xref="TAIR:AT4G11640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2PGG3" /translation="MEVNKGKYAADLSSIREAQARINSFIHKTPVMTSESLDAISGRR LFFKCECFQKGGAFKFRGACNAVFSLDDHQAAKGVVTHSSGNHAAALALAAKLRGIPA HIVIPKNAPQCKVQNVVRYGGQVIWSEATVPSREKTATKVLQETGAVLIHPYNDGRII SGQGTISLELLEQAPEIDTIIVPISGGGLISGVALAAKSINPAIRVLAAEPKGANDAA QSKAAGRIVTLPETNTVADGLRAFLGELTWPIVRDFVDDIITVDDTEIIEAMRLCYEI LKVAVEPSGAIGLAAVLSDSFRNNPAWKDCNQIGIILSGGNVDLEKLWSSFRK" gene complement(31964872..31975065) /locus_tag="TCM_016236" /note="dbxref CacaoGD:Thecc1EG016236" mRNA complement(join(31964872..31965424,31965547..31965650, 31965808..31966852,31967298..31967912,31975047..31975065)) /locus_tag="TCM_016236" /product="AMP-dependent synthetase and ligase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028940001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015177t1" /inference="similar to AA sequence:frave:gene32451" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc326t12" mRNA complement(join(31965108..31965424,31965547..31965646, 31966032..31966852,31967298..31967320)) /locus_tag="TCM_016236" /product="AMP-dependent synthetase and ligase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028940001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015177t1" /inference="similar to AA sequence:Phytozome:Glyma09g25470.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc202t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc326t12; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc202t6_C2" CDS complement(join(31965206..31965424,31965547..31965650, 31965808..31966852,31967298..31967498)) /locus_tag="TCM_016236" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene32451; paralog of Thecc1EG015177t1" /codon_start=1 /product="AMP-dependent synthetase and ligase family protein isoform 1" /protein_id="EOY24699.1" /db_xref="TAIR:AT3G48990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E7DDV3" /translation="MESVTLTGLMKKAATEFPSRRALSVSGKFDLTHAQLQQLIDHAA SLLIASGIKPGDVVALSFPNTVEFVIMFLAVIRCRATAAPLNSAYTTEEFEFYLSDSQ SKLLLVPAQGIKSAQAAASKLNIPHVSATLQDENSKVALSSNPDSHLDSVHQLVNDPA DVSLFLHTSGTTSRPKGVPLTQLNLATSTLNIKSVYKLTESDSTVIVLPLFHVHGLLA GLLSSLISGAAVALPAAGRFSASTFWTDVIKYNATWYTAVPTIHQIILDRHESKPEPA YPNLRFIRSCSASLAPSVLARLEAAFDAPVLEAYAMTEASHLMASNPLPECGPHKAGS VGKPVGQEMAILNEQGEIQPPNANGEVCIRGLNVTKGYKNNPEANKSAFLFGWFHTGD IGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPNVAQAVAFGVPDEKYGEE INCAVIPREGVNLEEAEISQYCKKNLASFKVPKKVFITGSLPKTATGKIQRRIVAEHF LSQMSAAKVPKFGA" CDS complement(join(31965206..31965424,31965547..31965646, 31966032..31966843)) /locus_tag="TCM_016236" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015177t1" /codon_start=1 /product="AMP-dependent synthetase and ligase family protein isoform 2" /protein_id="EOY24700.1" /db_xref="Phytozome:Glyma09g25470.1" /db_xref="TAIR:AT3G48990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E7DDV3" /translation="MFLAVIRCRATAAPLNSAYTTEEFEFYLSDSQSKLLLVPAQGIK SAQAAASKLNIPHVSATLQDENSKVALSSNPDSHLDSVHQLVNDPADVSLFLHTSGTT SRPKGVPLTQLNLATSTLNIKSVYKLTESDSTVIVLPLFHVHGLLAGLLSSLISGAAV ALPAAGRFSASTFWTDVIKYNATWYTAVPTIHQIILDRHESKPEPAYPNLRFIRSCSA SLAPSVLARLEAAFDAPVLEAYAMTEASHLMASNPLPECGPHKAGSVGKPVGQKISPI EVDAVLLSHPNVAQAVAFGVPDEKYGEEINCAVIPREGVNLEEAEISQYCKKNLASFK VPKKVFITGSLPKTATGKIQRRIVAEHFLSQMSAAKVPKFGA" mobile_element complement(31972778..31972914) /note="source:CACAO_MITE_S2_scaffold_1 594 716" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(31972795..31973770) /note="source:CACAO_on_E241_scaffold_112 76 1116" /mobile_element_type="transposon:TIR/hAT" gene 31975160..31981819 /locus_tag="TCM_016237" /note="dbxref CacaoGD:Thecc1EG016237" mRNA join(31975160..31975801,31977302..31978702, 31978828..31979082,31979899..31980021,31980185..31980664, 31980747..31981819) /locus_tag="TCM_016237" /product="Heavy metal atpase 5" /inference="alignment:exonerate- protein:2:ricco:30190.m011197" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040619t2" /inference="similar to AA sequence:ricco:30190.m011197" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1977t1" CDS join(31975511..31975801,31977302..31978702, 31978828..31979082,31979899..31980021,31980185..31980664, 31980747..31981163) /locus_tag="TCM_016237" /note="dbxref ricco:30190.m011197; paralog of Thecc1EG040619t2" /codon_start=1 /product="Heavy metal atpase 5" /protein_id="EOY24701.1" /db_xref="TAIR:AT1G63440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUD3" /translation="MAAKLLALACIRNDSYGDLSPRPHYPSMPKYPKGVSAQETSLEG SEAKAMFSVIGMTCSACAGSVEKAVKRLPGIREAVVDVLNNRAQVMFYPSFVNEETIR EAIEDVGFQASLIKDETNEKSIQVCRIHINGMTCTSCSSTVEQALQAIRGVQKAQVAL ATEEAEIHYDPKAVSHNQLMKAIEDAGFEAILVSTGEDISKIDLQVDGVKTGNSMRML ENSLQALPGVQAVDVSTEIKKISVSYKPDITGPRNFIRVIESTGSSRRFKATIFPEGE GGGRETHKKEEIKQYFRSFLWSLIFTIPVFLTSMVFMYIPGIKHGLDTKVVNMLTVGE IMRWVLSTPVQFIIGRRFYTGSYKALRHGSANMDVLIALGTNAAYFYSVYTVLRAATS PDFEGTDFFETSAMLVSFILLGKYLEVLAKGKTSEAIAKLMNLAPETAILLTLDGEGN VICEEEIDSRLIQKNDVIKIIPGAKVASDGFVLWGQSHINESMVTGEARPVAKRKGDT VIGGTVNENGVLHIKATKVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVI ILSFSTWLAWFLAGKFHGYPESWIPSSMDRFELALQFGISVMVIACPCALGLATPTAV MVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVLVNTRLLKNMVLREF YELLAATEVNSEHPLAKAIVEYAKKFREDEENPAWPEARDFVSVTGHGVKAFVRNREI IVGNKSLMLDHNIAIPADAQDMLTETEGMAQTGIFVSIDGEVTGVLAISDPVKPGAQE VISILKSMNVRSIMVTGDNMGTASSIARQIGIETVVAEAKPEQKAEKVKDLQAAGYAV AMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIHLSQKTFSR IRLNYIWALGYNILGIPVAAGALFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKNYK RPKKLENLEIRGIKIE" mobile_element complement(31978113..31978154) /note="source:CACAO_M_E42283_F15_scaffold_5 1055 1096" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31980141..31986861) /locus_tag="TCM_016238" /note="dbxref CacaoGD:Thecc1EG016238" mRNA complement(join(31980141..31981050,31981962..31985450, 31986729..31986861)) /locus_tag="TCM_016238" /product="C2 calcium/lipid-binding plant phosphoribosyltransferase family protein" /inference="alignment:exonerate-protein:2:frave:gene32454" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005361t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09250.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10610t1" CDS complement(31982357..31985380) /locus_tag="TCM_016238" /note="paralog of Thecc1EG005361t1" /codon_start=1 /product="C2 calcium/lipid-binding plant phosphoribosyltransferase family protein" /protein_id="EOY24702.1" /db_xref="Phytozome:POPTR_0001s09250.1" /db_xref="TAIR:AT4G11610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUD2" /translation="MSNLKLGVDVVSAHNLLPKDGQGSASSFVELYFDGQKFRTTIKE KDLNPVWNESFYFNISDPSNLHYLSLDAYVYNNIKGSNTRSFLGKVCLTGTSFVPYSD AVVLHYPLEKRGIFSRVRGELGLKVYITDDPSIKSSIPAPAVESSPSHEPHVTHMHAQ TVQSPAMKDKVESRHTFHHLPNPNLHQHDQHHSSDPAVHHHHHVPKYIADEMKPEPPP PKLVRMYSAASAQPVDFALKETSPFLGGGRVVGGRVIHGDKTASTYDLVERMHFLYVR VVKARELPAMDVTGSIDPFVEVKVGNYKGITKHFEKKQNPEWNQVFAFSRDRMQASVL EVVIKDKDLVKDDFVGIIRFDISEVPLRVPPDSPLAPEWYRLKDKKGEKIKGELMLAV WIGTQADEAFSDAWHSDAATPVDSTPATFTVLRSKVYHSPRLWYVRVNVVEAQDLVPT EKNRFPDVYVKAQIGNQVLKTKPCQARTLNAIWNEDLLFVAAEPFEDHLVLSVEDRVA PGKDEIIGRAIIPLNSIEKRADDRIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVC LDGGYHVLDESTHYSSDLRPTAKQLWRPPIGVLELGILNAVGLHPMKTRDGRGTSDTY CVAKYGHKWIRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKGSNGNKD LKIGKVRIRISTLEAGRVYTHSYPLLVLHPTGVKKMGELHLAIRFTCTSFVNMLCQYS RPLLPKMHYVRPFSVMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSM RKSKANFFRLMTVFSGLFAVGKWFGDICMWKNPITTVLVHVLFLMLACLPELILPTVF LYMFLIGVWNFRHRPRYPPHMNTKISQAEAVHPDELDEEFDTFPTSKSPELVRMRYDR LRSVAGRIQTVIGDVATQGERFQALLSWRDPRATAIFITFCLVAAIVLFVTPFQVIAA LTGFYVMRHPRFRYRLPPVPINFFRRLPARTDGML" gene 31989358..31992999 /locus_tag="TCM_016239" /note="dbxref CacaoGD:Thecc1EG016239" mRNA join(31989358..31989771,31989898..31989971, 31990141..31990201,31990303..31990356,31990839..31990918, 31991383..31991584,31992461..31992999) /locus_tag="TCM_016239" /product="Glutathione S-transferase THETA 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011199" /inference="similar to AA sequence:Phytozome:POPTR_0001s09230.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10060t1" CDS join(31989707..31989771,31989898..31989971, 31990141..31990201,31990303..31990356,31990839..31990918, 31991383..31991546) /locus_tag="TCM_016239" /codon_start=1 /product="Glutathione S-transferase THETA 1" /protein_id="EOY24703.1" /db_xref="Phytozome:POPTR_0001s09230.1" /db_xref="TAIR:AT5G41210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L727" /translation="MKLKVYAERMSQPSRAVIIFCKVNGIDYEEIKVDISKRQHLTPE FADINPMKKVPAIVDGRFKLFESHAILIYLACAFPGVADHWYPADLFKRSKIHSVLDW HHSNLRHGAVTYVLNTTLAPALGLPLNPRAAAEAEKLLTSSLSKIESIWLKGSGRFLL GGNQP" gene 31993390..31996272 /locus_tag="TCM_016240" /note="dbxref CacaoGD:Thecc1EG016240" mRNA 31993390..31996272 /locus_tag="TCM_016240" /product="Root hair specific 8" /inference="alignment:exonerate- protein:2:ricco:30190.m011203" /inference="similar to AA sequence:ricco:30190.m011203" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6223t1" CDS 31993970..31995601 /locus_tag="TCM_016240" /note="dbxref ricco:30190.m011203" /codon_start=1 /product="Root hair specific 8" /protein_id="EOY24704.1" /db_xref="TAIR:AT1G63450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKI7" /translation="MAISMSKKKSKASKKVETKQYDFADTILFKILYRIPAAILLLIL IFLWSSSTTIISGKFVHVCISSRKLNNLYCLSAGTQPNFEIPIPAHNNSLISPNISAS IREVVNIARDDPDSIVSNRVHNNDSGGEVAIAVKAVEAQLQVQRSWISNKNHAESCDG RGIYVYDLPSKFNKDLVGQCGDMIPWTNFCKYFNNEAMGEPITKLGKGWYHTHQYSLE LIFHTRVLKHPCRVYNENDAKLFYVPFYAGLDILRWHFKNVSNDVKDTLALELVKWLE NRKSWLQHSGKDHVFVLGKISWDFRRKSDASWGTRLLELDPMQNSVKLLIERQPWHIN DIGIPHPTYFHPHSDDDIITWQLKIIRSNRKSLVSFAGAARPDSPENIRSILINQCNS DERKCRFLNCSSGGCDQPESVIELFMESEFCLQPPGDSPTRKSLFDSLVSGCIPVLFD PFTAYYQYPWHLPEDHSRYSVFIDQEEVRQMKVNVVERLTKVPVRERDDVRRYIVYEL LPGLVYGDSNSQLEKFQDAFSMTMNNLLERVNRIE" mobile_element complement(31996222..31996407) /note="source:CACAO_Again_on_E73_scaffold_3 621 813" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31996464..31996520) /note="source:CACAO_Again_on_S_E162_scaffold_5 1 60" /mobile_element_type="transposon:TIR/hAT" gene 31996753..31999007 /locus_tag="TCM_016241" /note="dbxref CacaoGD:Thecc1EG016241" mRNA join(31996753..31997124,31997291..31997367, 31997580..31997641,31997862..31997980,31998450..31998617, 31998706..31999007) /locus_tag="TCM_016241" /product="Glutathione peroxidase 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021557t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s12620.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10682t2" CDS join(31996870..31997124,31997291..31997367, 31997580..31997641,31997862..31997980,31998450..31998617, 31998706..31998732) /locus_tag="TCM_016241" /note="paralog of Thecc1EG021557t1" /codon_start=1 /product="Glutathione peroxidase 6" /protein_id="EOY24705.1" /db_xref="Phytozome:POPTR_0003s12620.1" /db_xref="TAIR:AT4G11600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWH5" /translation="MLCSPTNLFRRNLSAVAVSASLLLSKRLSPSSKQTLLSFPQISP VSLVSPSIETGFSRSFLGSLRFDHIMAGQSSKGSIHDFNVKDARGNDVDLSIYKGKVL LIVNVASQCGLTNSNYTELSQLYEKYKDQGLEILAFPCNQFGGQEPGNNEQILEFACT RFKAEYPIFDKVDVNGEKTAPIYKFLKSSKGGLFGDSIKWNFSKFLVDKEGNVVDRYA PTTSPLSIEKDIKKLLA" gene 31999180..32001471 /locus_tag="TCM_016242" /note="dbxref CacaoGD:Thecc1EG016242" mRNA join(31999180..31999319,31999830..31999906, 32000085..32000146,32000382..32000500,32000821..32000988, 32001103..32001471) /locus_tag="TCM_016242" /product="Glutathione peroxidase 8" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g01710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016241t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09280.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10061t1" CDS join(31999266..31999319,31999830..31999906, 32000085..32000146,32000382..32000500,32000821..32000988, 32001103..32001141) /locus_tag="TCM_016242" /note="paralog of Thecc1EG016241t1" /codon_start=1 /product="Glutathione peroxidase 8" /protein_id="EOY24706.1" /db_xref="Phytozome:POPTR_0001s09280.1" /db_xref="TAIR:AT1G63460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWH5" /translation="MASQSTKNPESIYDFTVKDAKGNVVDLSAYKGKVLLIVNVASKC GMTNPNYTELNQLYEKYKDQGLEILAFPCNQFGEEEPGSNDQIAVFVCTRFRSEFPIF DKIEVNGDNASPLYKYLKLGKWGIFGDDIQWNFAKFLVSKDGQVVHRYYPTTSPLSLE YDIKKLLGLGQE" mobile_element complement(31999867..31999914) /note="source:INTACT563_F255_scaffold_10-int 1534 1582" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(32001558..32005815) /locus_tag="TCM_016243" /note="dbxref CacaoGD:Thecc1EG016243" mRNA complement(join(32001558..32002231,32002710..32002868, 32003787..32003918,32004802..32004869,32005256..32005815)) /locus_tag="TCM_016243" /product="AT hook motif DNA-binding family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005351t4" /inference="similar to AA sequence:ricco:30190.m011208" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10082t4" CDS complement(join(32002004..32002231,32002710..32002868, 32003787..32003918,32004802..32004869,32005256..32005694)) /locus_tag="TCM_016243" /note="dbxref ricco:30190.m011208; paralog of Thecc1EG005351t4" /codon_start=1 /product="AT hook motif DNA-binding family protein, putative" /protein_id="EOY24707.1" /db_xref="TAIR:AT1G63470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWH8" /translation="MDGREAMALSGGSAPYYIHRAVGGSSSGSLTHTGIAAFNSQPGF RPLSNPQVQVQSNVGSTFTGEPKNVSFPHGINMGVSSGMPPGEPVKKKRGRPRKYAPD GQVSLGLLPMPAKPKPSSGSDASGQKRCRGRPPGTGRKQQLATLGEWMNSSAGLAFAP HVVTVGIGEDIVAKMLSFSQQRPRAVCILSGSGTVSSVTLRQPASSTPTVTYEGRFEI LCLSGSYLLAEDGGPRSRTGGISASLSTPDGHVIGGGVATLIASSLVQLVVCSFVYGG SKTKNKQLASPKGSKDSMPQLSNKSATQTGAPSTQNFSHPSMSVWPGSRHVDPRNPHT DIDLTRG" gene complement(32007391..32011558) /locus_tag="TCM_016244" /note="dbxref CacaoGD:Thecc1EG016244" mRNA complement(join(32007391..32007725,32009194..32009283, 32009569..32009664,32010659..32010716,32010952..32011108, 32011312..32011558)) /locus_tag="TCM_016244" /product="Polynucleotidyl transferase isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09310.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019762001" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b015696t1a8; alternateUTRof:Thecc1EG016244t7; inference alignment:Newbler:10:TSA:cgbaB_g00058t00005" mRNA complement(join(32007391..32007725,32009194..32009331, 32009569..32009664,32010659..32010716,32010952..32011108, 32011312..32011558)) /locus_tag="TCM_016244" /product="Polynucleotidyl transferase isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09310.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019762001" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b015696t1a9; alternateUTRof:Thecc1EG016244t6; inference alignment:Newbler:10:TSA:cgbaB_g00058t00005" mRNA complement(join(32007391..32007725,32009194..32009331, 32009569..32009664,32009743..32009811,32010659..32010716, 32010952..32011108,32011312..32011558)) /locus_tag="TCM_016244" /product="Polynucleotidyl transferase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09310.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019762001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10658t3; alternateUTRof:Thecc1EG016244t2; inference alignment:Newbler:10:TSA:cgbaB_g00058t00005; inference alignment:Newbler:10:TSA:cgbaP1_g01145t00002" mRNA complement(join(32007397..32007725,32009194..32009283, 32009569..32009664,32009743..32009811,32010659..32010716, 32010952..32011108,32011312..32011458)) /locus_tag="TCM_016244" /product="Polynucleotidyl transferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09310.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019762001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b015696t1a3; alternateUTRof:Thecc1EG016244t1; inference alignment:Newbler:10:TSA:cgbaB_g00058t00005" mRNA complement(join(32007397..32007725,32009194..32009331, 32009569..32009664,32009743..32009811,32010659..32010716, 32010952..32011108,32011304..32011413)) /locus_tag="TCM_016244" /product="Polynucleotidyl transferase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09310.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019762001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b015696t1a7; alternateUTRof:Thecc1EG016244t2; inference alignment:Newbler:10:TSA:cgbaB_g00058t00005" mRNA complement(join(32007401..32007725,32009194..32009283, 32009569..32009664,32010659..32010716,32010952..32011108, 32011205..32011313)) /locus_tag="TCM_016244" /product="Polynucleotidyl transferase isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09310.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019762001" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00058t00008; inference alignment:Newbler:10:TSA:cgbaB_g00058t00005; inference alignment:Newbler:10:TSA:cgbaP1_g01145t00002" mRNA complement(join(32007401..32007725,32009194..32009331, 32009569..32009664,32010659..32010716,32010952..32011108, 32011205..32011313)) /locus_tag="TCM_016244" /product="Polynucleotidyl transferase isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09310.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019762001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00058t00007; inference alignment:Newbler:10:TSA:cgbaB_g00058t00005; inference alignment:Newbler:10:TSA:cgbaP1_g01145t00002" mRNA complement(join(32007401..32007725,32009194..32009283, 32009569..32009664,32009743..32009811,32010659..32010716, 32010952..32011108,32011205..32011313)) /locus_tag="TCM_016244" /product="Polynucleotidyl transferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09310.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019762001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00058t00005; inference alignment:Newbler:10:TSA:cgbaB_g00058t00005" mRNA complement(join(32007401..32007725,32009194..32009331, 32009569..32009664,32009743..32009811,32010659..32010716, 32010952..32011108,32011205..32011313)) /locus_tag="TCM_016244" /product="Polynucleotidyl transferase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09310.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019762001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00058t00003; inference alignment:Newbler:10:TSA:cgbaB_g00058t00005; inference alignment:Newbler:10:TSA:cgbaP1_g01145t00002" CDS complement(join(32007675..32007725,32009194..32009283, 32009569..32009664,32010659..32010716,32010952..32011100)) /locus_tag="TCM_016244" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Polynucleotidyl transferase isoform 7" /protein_id="EOY24714.1" /db_xref="Phytozome:GSVIVT01019762001" /db_xref="TAIR:AT3G52905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8LQC7" /translation="MQYVKCLNFFQDLLKAKALERGRLLGLDVGDKYVGLAVSDLDNK IATPLSVLIRKKTNIDLMASDFQSLAVQVKLFIDDLSKTGKLDGVKYTFWNECFTSKN ADLLLKPLSLHPILSKTIVDKFAAVQILQTYLDYGKKNVKLETAG" CDS complement(join(32007675..32007725,32009194..32009283, 32009569..32009664,32010659..32010716,32010952..32011100)) /locus_tag="TCM_016244" /note="encoded by transcript variant 9; alternatively spliced" /codon_start=1 /product="Polynucleotidyl transferase isoform 7" /protein_id="EOY24716.1" /db_xref="Phytozome:GSVIVT01019762001" /db_xref="TAIR:AT3G52905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8LQC7" /translation="MQYVKCLNFFQDLLKAKALERGRLLGLDVGDKYVGLAVSDLDNK IATPLSVLIRKKTNIDLMASDFQSLAVQVKLFIDDLSKTGKLDGVKYTFWNECFTSKN ADLLLKPLSLHPILSKTIVDKFAAVQILQTYLDYGKKNVKLETAG" CDS complement(join(32007675..32007725,32009194..32009331, 32009569..32009664,32010659..32010716,32010952..32011100)) /locus_tag="TCM_016244" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Polynucleotidyl transferase isoform 6" /protein_id="EOY24713.1" /db_xref="Phytozome:GSVIVT01019762001" /db_xref="TAIR:AT3G52905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8LQC7" /translation="MQYVKCLNFFQDLLKAKALERGRLLGLDVGDKYVGLAVSDLDNK IATPLSVLIRKKTNIDLMASDFQSLAVQVKLFIDDLSKTGKLDGVKYTFWNECFTSKQ YMTSSKESHSLSFQQNADLLLKPLSLHPILSKTIVDKFAAVQILQTYLDYGKKNVKLE TAG" CDS complement(join(32007675..32007725,32009194..32009331, 32009569..32009664,32010659..32010716,32010952..32011100)) /locus_tag="TCM_016244" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Polynucleotidyl transferase isoform 6" /protein_id="EOY24715.1" /db_xref="Phytozome:GSVIVT01019762001" /db_xref="TAIR:AT3G52905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8LQC7" /translation="MQYVKCLNFFQDLLKAKALERGRLLGLDVGDKYVGLAVSDLDNK IATPLSVLIRKKTNIDLMASDFQSLAVQVKLFIDDLSKTGKLDGVKYTFWNECFTSKQ YMTSSKESHSLSFQQNADLLLKPLSLHPILSKTIVDKFAAVQILQTYLDYGKKNVKLE TAG" CDS complement(join(32007675..32007725,32009194..32009283, 32009569..32009664,32009743..32009811,32010659..32010716, 32010952..32011100)) /locus_tag="TCM_016244" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Polynucleotidyl transferase isoform 1" /protein_id="EOY24708.1" /db_xref="Phytozome:GSVIVT01019762001" /db_xref="TAIR:AT3G52905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5JN17" /translation="MQYVKCLNFFQDLLKAKALERGRLLGLDVGDKYVGLAVSDLDNK IATPLSVLIRKKTNIDLMASDFQSLISELSLVGFIVGYPFDRQQRAPDAVQVKLFIDD LSKTGKLDGVKYTFWNECFTSKNADLLLKPLSLHPILSKTIVDKFAAVQILQTYLDYG KKNVKLETAG" CDS complement(join(32007675..32007725,32009194..32009283, 32009569..32009664,32009743..32009811,32010659..32010716, 32010952..32011100)) /locus_tag="TCM_016244" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Polynucleotidyl transferase isoform 1" /protein_id="EOY24712.1" /db_xref="Phytozome:GSVIVT01019762001" /db_xref="TAIR:AT3G52905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5JN17" /translation="MQYVKCLNFFQDLLKAKALERGRLLGLDVGDKYVGLAVSDLDNK IATPLSVLIRKKTNIDLMASDFQSLISELSLVGFIVGYPFDRQQRAPDAVQVKLFIDD LSKTGKLDGVKYTFWNECFTSKNADLLLKPLSLHPILSKTIVDKFAAVQILQTYLDYG KKNVKLETAG" CDS complement(join(32007675..32007725,32009194..32009331, 32009569..32009664,32009743..32009811,32010659..32010716, 32010952..32011100)) /locus_tag="TCM_016244" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Polynucleotidyl transferase isoform 2" /protein_id="EOY24709.1" /db_xref="Phytozome:GSVIVT01019762001" /db_xref="TAIR:AT3G52905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5JN17" /translation="MQYVKCLNFFQDLLKAKALERGRLLGLDVGDKYVGLAVSDLDNK IATPLSVLIRKKTNIDLMASDFQSLISELSLVGFIVGYPFDRQQRAPDAVQVKLFIDD LSKTGKLDGVKYTFWNECFTSKQYMTSSKESHSLSFQQNADLLLKPLSLHPILSKTIV DKFAAVQILQTYLDYGKKNVKLETAG" CDS complement(join(32007675..32007725,32009194..32009331, 32009569..32009664,32009743..32009811,32010659..32010716, 32010952..32011100)) /locus_tag="TCM_016244" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Polynucleotidyl transferase isoform 2" /protein_id="EOY24710.1" /db_xref="Phytozome:GSVIVT01019762001" /db_xref="TAIR:AT3G52905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5JN17" /translation="MQYVKCLNFFQDLLKAKALERGRLLGLDVGDKYVGLAVSDLDNK IATPLSVLIRKKTNIDLMASDFQSLISELSLVGFIVGYPFDRQQRAPDAVQVKLFIDD LSKTGKLDGVKYTFWNECFTSKQYMTSSKESHSLSFQQNADLLLKPLSLHPILSKTIV DKFAAVQILQTYLDYGKKNVKLETAG" CDS complement(join(32007675..32007725,32009194..32009331, 32009569..32009664,32009743..32009811,32010659..32010716, 32010952..32011100)) /locus_tag="TCM_016244" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Polynucleotidyl transferase isoform 2" /protein_id="EOY24711.1" /db_xref="Phytozome:GSVIVT01019762001" /db_xref="TAIR:AT3G52905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5JN17" /translation="MQYVKCLNFFQDLLKAKALERGRLLGLDVGDKYVGLAVSDLDNK IATPLSVLIRKKTNIDLMASDFQSLISELSLVGFIVGYPFDRQQRAPDAVQVKLFIDD LSKTGKLDGVKYTFWNECFTSKQYMTSSKESHSLSFQQNADLLLKPLSLHPILSKTIV DKFAAVQILQTYLDYGKKNVKLETAG" mobile_element 32008224..32008532 /note="source:scaffold_2_CACTA_0244 13125 13411" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32008533..32008758) /note="source:INTACT135F_F90_scaffold_2-int 13173 13513" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32011643..32011908 /note="source:CACAO_on_E681_scaffold_9 1 226" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(32011895..32011996) /note="source:scaffold_3_CACTA_0396 893 995" /mobile_element_type="transposon:TIR/CACTA" gene 32012191..32012864 /locus_tag="TCM_016245" /note="dbxref CacaoGD:Thecc1EG016245" mRNA 32012191..32012864 /locus_tag="TCM_016245" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage" gene complement(32012210..32026918) /locus_tag="TCM_016246" /note="dbxref CacaoGD:Thecc1EG016246" mRNA complement(join(32012210..32013318,32013645..32013847, 32013924..32014019,32014104..32014199,32014839..32015000, 32015153..32015297,32015843..32015916,32015995..32016103, 32016314..32016447,32016540..32016689,32017212..32017290, 32017732..32017793,32017929..32018111,32018372..32018707, 32018787..32018946,32019044..32019175,32019303..32019361, 32019466..32019530,32019616..32019823,32019907..32020023, 32020141..32020227,32020596..32020691,32020840..32020905, 32020984..32021169,32021275..32021427,32022142..32022327, 32022866..32022952,32023061..32023219,32023431..32023567, 32023682..32023739,32024145..32024267,32024611..32024668, 32025260..32026615,32026761..32026918)) /locus_tag="TCM_016246" /product="Transcription factor jumonji domain-containing protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene32474" /inference="similar to AA sequence:frave:gene32474" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10668t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10668t4" CDS 32012254..32012574 /locus_tag="TCM_016245" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24717.1" /translation="MKVQEKIEIELWNATRQIGPLRERIQEKTLLEELELELKSKEIC INELKQKWADVGASYAYLIAEKEKMAQEAEESRRVLADVYLRRDEAEAEIEMAKDGLF SCLG" CDS complement(join(32013057..32013318,32013645..32013847, 32013924..32014019,32014104..32014199,32014839..32015000, 32015153..32015297,32015843..32015916,32015995..32016103, 32016314..32016447,32016540..32016689,32017212..32017290, 32017732..32017793,32017929..32018111,32018372..32018707, 32018787..32018946,32019044..32019175,32019303..32019361, 32019466..32019530,32019616..32019823,32019907..32020023, 32020141..32020227,32020596..32020691,32020840..32020905, 32020984..32021169,32021275..32021427,32022142..32022327, 32022866..32022952,32023061..32023219,32023431..32023567, 32023682..32023739,32024145..32024267,32024611..32024668, 32025260..32026584)) /locus_tag="TCM_016246" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene32474" /codon_start=1 /product="Transcription factor jumonji domain-containing protein, putative isoform 1" /protein_id="EOY24718.1" /db_xref="TAIR:AT1G63490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWH9" /translation="MGKGRPRAVETGQNLSVSSNGSLNILSGPVFYPSEEEFRDPLEY IYKIRPEAEPYGICKIVPPKNWNPPFALNVDSFTFPTKTQAIHQLQARPASCDSKTFE LEYNRFLEGHCGKKLKKRVVFEGEELDLCKLFNAVRRYGGYDKVVKDKKWGEVFRFVR SGKKISECAKHVLCQLYREHLYDYEGYYKRLNQERARSCKRRIHEDPKNENKVKISSS KRRRKNSDHEKVKVCKVEEEEELDQICEQCRSGLHGEVMLLCDRCNKGWHIYCLSPPL KQVPSGNWYCFECLNSDKDSFGFVPGKRFTLEAFRRLADRAKKKWFGSGSASRVQIEK KFWEIVEGSAGEVEVLYGSDLDTSVYGSGFPRLNDQRSDSVDLKAWDEYCRSPWNLNN LPKLKGSMLRAVHHNITGVMVPWLYVGMLFSAFCWHFEDHCFYSMNYLHWGEPKCWYS VPGSEASAFEKVMRNCLPDLFDAQPDLLFQLVTMLNPSVLRENGVPVYSVLQEPGNFV ITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGGSGAELYQLYHKAAVLSHEELLCVVA KSGWDSKASAYLRKELLRLYTKERTWRERLWKSGIIRSSLMSPRKSPEFVGTEEDPMC IICKQYLYLSAVVCRCRPSAFVCVEHWEHLCECKSGKLRLLYRHTLAELADLMLIVDK HASEEIPPSDSLQKKNISFSNELNVSKKKVKGAHITHAQLSEQWLLHSHRILQSPFSG DAYTNLLKEAEQFLWAGSEMDSVRNVVKNLTEAQKWAQGIRDCLSKIENWSPGGGLEK VPLKLVNKLLTVDPVPCNELGYLKLKDCAEEASLLVQNIDAALSKCSTINELELLYSR ACSSPIHVKESEMLSQKISLSKVWIESARKLISDKRPAAIDIDILYKLKSEILELHVQ VQEMEILFDLLSQAESCQTRCRSVLDGSVTLKDVEVLLQEMESFTVNIPELRLLKQYQ IDASLWIARYDNVMKNVHQREDQQNVIEELNCILEDGASLKIQVYELPLVKIELKKAC CREKALKACDTKMALDLLQQLLAEAVVLQIEREELFLGLSRELAGALQWEEKAKNLLA CKAEMSEFEDLIRTSEDIVAITPSLGDVKDAISVAKSWLNNAKPFLGSDFSGLSASCS LQKLGDLKELVSQSRFLKIMLEERSVLETVLKNCMEWQREAFSVLQDVECLYGVTDIG DGRSNGLISKIESLLTLLESVTKAGLSLRVDFPEIPKLQNACSTLRWCNQVLSFCYLI PSYEHVASVMDIAGQLSITCSSGNLLSSLIFGAKWLKNVSEVISAPSKCKACKLTDAE EMLTEYQGISISFPMMVAQLTDATCKHRLWQEQVHQFFGLELAERSWSQIMQLKEHGK ASFFTCAELDMVLSEVEKVEKWKQRCMDAVANFAGDENTLLGALQKIKESLDRSLYVY EKSESCEGVCLCMCCANGSEDLEFLTCSTCKDCYHLQCVGYRNHAEVYVCSYCQLLMG GSIPNKGGGILRHNGKYSDLKLLSELVSIDENFCVRIEERDKLQQIVDQGCACRTCLT QIVDFEMSYYDKHLSVVGKKLTTALKAIGVAGVYDHQSYCDLERALARYSWRVRVSRL LDALEKGLEKPSIQQIQRHLKEGEAMNILPEDYFRLKLSALKDIGLQWADRAKKVAAD SGALGLDGVYELIAEGESLPVCLKRELELLRARSMLYCICRKPYDERSMIACGQCGEW YHIKCVKLLSPPKVYICAACVPGTENLVSTLRPSDQERLTYAKSVEPKTPSPRHTKPR MGLKKSERSLTQNMLAIANRDSNFGRSNGIDRLWWRNRKPFRRVAKKRAELDSLSSFF HRQSPSQR" mRNA complement(join(32013996..32014019,32014104..32014199, 32014839..32015000,32015153..32015297,32015843..32015916, 32015995..32016103,32016309..32016447,32016540..32016689, 32017212..32017290,32017732..32017793,32017929..32018111, 32018372..32018707,32018787..32018946,32019044..32019175, 32019303..32019361,32019466..32019530,32019616..32019823, 32019907..32020023,32020141..32020227,32020596..32020691, 32020840..32020905,32020984..32021169,32021275..32021427, 32022142..32022327,32022866..32022952,32023061..32023219, 32023431..32023567,32023682..32023739,32024145..32024267, 32024611..32024668,32025260..32026785)) /locus_tag="TCM_016246" /product="Jumonji domain protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene32474" /inference="similar to AA sequence:frave:gene32474" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc421t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10668t4" mRNA complement(join(32013996..32014019,32014104..32014199, 32014839..32015000,32015153..32015297,32015843..32015935, 32015995..32016103,32016314..32016447,32016540..32016689, 32017212..32017290,32017732..32017793,32017929..32018111, 32018372..32018707,32018787..32018946,32019044..32019175, 32019303..32019361,32019466..32019530,32019616..32019823, 32019907..32020023,32020141..32020227,32020596..32020691, 32020840..32020905,32020984..32021169,32021275..32021427, 32022142..32022327,32022866..32022952,32023061..32023219, 32023431..32023567,32023682..32023739,32024145..32024267, 32024611..32024668,32025260..32026664)) /locus_tag="TCM_016246" /product="Jumonji domain protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene32474" /inference="similar to AA sequence:frave:gene32474" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc636t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10668t4" CDS complement(join(32015909..32015935,32015995..32016103, 32016314..32016447,32016540..32016689,32017212..32017290, 32017732..32017793,32017929..32018111,32018372..32018707, 32018787..32018946,32019044..32019175,32019303..32019361, 32019466..32019530,32019616..32019823,32019907..32020023, 32020141..32020227,32020596..32020691,32020840..32020905, 32020984..32021169,32021275..32021427,32022142..32022327, 32022866..32022952,32023061..32023219,32023431..32023567, 32023682..32023739,32024145..32024267,32024611..32024668, 32025260..32026584)) /locus_tag="TCM_016246" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene32474" /codon_start=1 /product="Jumonji domain protein, putative isoform 2" /protein_id="EOY24719.1" /db_xref="TAIR:AT1G63490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWH9" /translation="MGKGRPRAVETGQNLSVSSNGSLNILSGPVFYPSEEEFRDPLEY IYKIRPEAEPYGICKIVPPKNWNPPFALNVDSFTFPTKTQAIHQLQARPASCDSKTFE LEYNRFLEGHCGKKLKKRVVFEGEELDLCKLFNAVRRYGGYDKVVKDKKWGEVFRFVR SGKKISECAKHVLCQLYREHLYDYEGYYKRLNQERARSCKRRIHEDPKNENKVKISSS KRRRKNSDHEKVKVCKVEEEEELDQICEQCRSGLHGEVMLLCDRCNKGWHIYCLSPPL KQVPSGNWYCFECLNSDKDSFGFVPGKRFTLEAFRRLADRAKKKWFGSGSASRVQIEK KFWEIVEGSAGEVEVLYGSDLDTSVYGSGFPRLNDQRSDSVDLKAWDEYCRSPWNLNN LPKLKGSMLRAVHHNITGVMVPWLYVGMLFSAFCWHFEDHCFYSMNYLHWGEPKCWYS VPGSEASAFEKVMRNCLPDLFDAQPDLLFQLVTMLNPSVLRENGVPVYSVLQEPGNFV ITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGGSGAELYQLYHKAAVLSHEELLCVVA KSGWDSKASAYLRKELLRLYTKERTWRERLWKSGIIRSSLMSPRKSPEFVGTEEDPMC IICKQYLYLSAVVCRCRPSAFVCVEHWEHLCECKSGKLRLLYRHTLAELADLMLIVDK HASEEIPPSDSLQKKNISFSNELNVSKKKVKGAHITHAQLSEQWLLHSHRILQSPFSG DAYTNLLKEAEQFLWAGSEMDSVRNVVKNLTEAQKWAQGIRDCLSKIENWSPGGGLEK VPLKLVNKLLTVDPVPCNELGYLKLKDCAEEASLLVQNIDAALSKCSTINELELLYSR ACSSPIHVKESEMLSQKISLSKVWIESARKLISDKRPAAIDIDILYKLKSEILELHVQ VQEMEILFDLLSQAESCQTRCRSVLDGSVTLKDVEVLLQEMESFTVNIPELRLLKQYQ IDASLWIARYDNVMKNVHQREDQQNVIEELNCILEDGASLKIQVYELPLVKIELKKAC CREKALKACDTKMALDLLQQLLAEAVVLQIEREELFLGLSRELAGALQWEEKAKNLLA CKAEMSEFEDLIRTSEDIVAITPSLGDVKDAISVAKSWLNNAKPFLGSDFSGLSASCS LQKLGDLKELVSQSRFLKIMLEERSVLETVLKNCMEWQREAFSVLQDVECLYGVTDIG DGRSNGLISKIESLLTLLESVTKAGLSLRVDFPEIPKLQNACSTLRWCNQVLSFCYLI PSYEHVASVMDIAGQLSITCSSGNLLSSLIFGAKWLKNVSEVISAPSKCKACKLTDAE EMLTEYQGISISFPMMVAQLTDATCKHRLWQEQVHQFFGLELAERSWSQIMQLKEHGK ASFFTCAELDMVLSEVEKVEKWKQRCMDAVANFAGDENTLLGALQKIKESLDRSLYVY EKSESCEGVCLCMCCANGSEDLEFLTCSTCKDCYHLQCVGYRNHAEVYVCSYCQLLMG GSIPNKGGGILLPLLGTEA" CDS complement(join(32016310..32016447,32016540..32016689, 32017212..32017290,32017732..32017793,32017929..32018111, 32018372..32018707,32018787..32018946,32019044..32019175, 32019303..32019361,32019466..32019530,32019616..32019823, 32019907..32020023,32020141..32020227,32020596..32020691, 32020840..32020905,32020984..32021169,32021275..32021427, 32022142..32022327,32022866..32022952,32023061..32023219, 32023431..32023567,32023682..32023739,32024145..32024267, 32024611..32024668,32025260..32026584)) /locus_tag="TCM_016246" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene32474" /codon_start=1 /product="Jumonji domain protein isoform 3" /protein_id="EOY24720.1" /db_xref="TAIR:AT1G63490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWH9" /translation="MGKGRPRAVETGQNLSVSSNGSLNILSGPVFYPSEEEFRDPLEY IYKIRPEAEPYGICKIVPPKNWNPPFALNVDSFTFPTKTQAIHQLQARPASCDSKTFE LEYNRFLEGHCGKKLKKRVVFEGEELDLCKLFNAVRRYGGYDKVVKDKKWGEVFRFVR SGKKISECAKHVLCQLYREHLYDYEGYYKRLNQERARSCKRRIHEDPKNENKVKISSS KRRRKNSDHEKVKVCKVEEEEELDQICEQCRSGLHGEVMLLCDRCNKGWHIYCLSPPL KQVPSGNWYCFECLNSDKDSFGFVPGKRFTLEAFRRLADRAKKKWFGSGSASRVQIEK KFWEIVEGSAGEVEVLYGSDLDTSVYGSGFPRLNDQRSDSVDLKAWDEYCRSPWNLNN LPKLKGSMLRAVHHNITGVMVPWLYVGMLFSAFCWHFEDHCFYSMNYLHWGEPKCWYS VPGSEASAFEKVMRNCLPDLFDAQPDLLFQLVTMLNPSVLRENGVPVYSVLQEPGNFV ITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGGSGAELYQLYHKAAVLSHEELLCVVA KSGWDSKASAYLRKELLRLYTKERTWRERLWKSGIIRSSLMSPRKSPEFVGTEEDPMC IICKQYLYLSAVVCRCRPSAFVCVEHWEHLCECKSGKLRLLYRHTLAELADLMLIVDK HASEEIPPSDSLQKKNISFSNELNVSKKKVKGAHITHAQLSEQWLLHSHRILQSPFSG DAYTNLLKEAEQFLWAGSEMDSVRNVVKNLTEAQKWAQGIRDCLSKIENWSPGGGLEK VPLKLVNKLLTVDPVPCNELGYLKLKDCAEEASLLVQNIDAALSKCSTINELELLYSR ACSSPIHVKESEMLSQKISLSKVWIESARKLISDKRPAAIDIDILYKLKSEILELHVQ VQEMEILFDLLSQAESCQTRCRSVLDGSVTLKDVEVLLQEMESFTVNIPELRLLKQYQ IDASLWIARYDNVMKNVHQREDQQNVIEELNCILEDGASLKIQVYELPLVKIELKKAC CREKALKACDTKMALDLLQQLLAEAVVLQIEREELFLGLSRELAGALQWEEKAKNLLA CKAEMSEFEDLIRTSEDIVAITPSLGDVKDAISVAKSWLNNAKPFLGSDFSGLSASCS LQKLGDLKELVSQSRFLKIMLEERSVLETVLKNCMEWQREAFSVLQDVECLYGVTDIG DGRSNGLISKIESLLTLLESVTKAGLSLRVDFPEIPKLQNACSTLRWCNQVLSFCYLI PSYEHVASVMDIAGQLSITCSSGNLLSSLIFGAKWLKNVSEVISAPSKCKACKLTDAE EMLTEYQGISISFPMMVAQLTDATCKHRLWQEQVHQFFGLELAERSWSQIMQLKEHGK ASFFTCAELDMVLSEVEKVEKWKQRCMDAVANFAGDENTLLGALQKIKESLDRSLYVY EKSESCEGVCLCMCCANGSEDLEFLTCSTCKDW" mobile_element complement(32028928..32028981) /note="source:scaffold_7_CACTA_0789 1899 1953" /mobile_element_type="transposon:TIR/CACTA" gene 32031260..32037749 /locus_tag="TCM_016247" /note="dbxref CacaoGD:Thecc1EG016247" mRNA join(32031260..32031443,32031577..32031619, 32031905..32032233,32032323..32032543,32032941..32033076, 32033334..32033467,32033549..32033654,32034259..32034344, 32034925..32035113,32035501..32035653,32036432..32036545, 32036912..32037749) /locus_tag="TCM_016247" /product="Kinase protein with tetratricopeptide repeat domain isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005349t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09320.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1182t1; alternateUTRof:Thecc1EG016247t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10600t3" mRNA join(32031273..32031443,32031534..32031622, 32031905..32032233,32032323..32032543,32032941..32033076, 32033334..32033467,32033549..32033654,32034259..32034344, 32034925..32035113,32035501..32035653,32036432..32036545, 32036912..32037728) /locus_tag="TCM_016247" /product="Kinase protein with tetratricopeptide repeat domain isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005349t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09320.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10600t2; alternateUTRof:Thecc1EG016247t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10600t3" mRNA join(32031273..32031443,32031534..32031619, 32031905..32032233,32032323..32032543,32032941..32033076, 32033334..32033467,32033549..32033654,32034256..32034344, 32034925..32035116,32035501..32035653,32036432..32036545, 32036909..32037728) /locus_tag="TCM_016247" /product="Kinase protein with tetratricopeptide repeat domain isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005349t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09320.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10600t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10600t3" mRNA join(32031273..32031443,32031534..32031619, 32031905..32032233,32032323..32032543,32032941..32033076, 32033334..32033467,32033549..32033654,32034259..32034344, 32034925..32035113,32035501..32035653,32036432..32036545, 32036912..32037728) /locus_tag="TCM_016247" /product="Kinase protein with tetratricopeptide repeat domain isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005349t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09320.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10600t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10600t3" CDS join(32032152..32032233,32032323..32032543, 32032941..32033076,32033334..32033467,32033549..32033654, 32034256..32034344,32034925..32035116,32035501..32035653, 32036432..32036545,32036909..32037157) /locus_tag="TCM_016247" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG005349t1" /codon_start=1 /product="Kinase protein with tetratricopeptide repeat domain isoform 4" /protein_id="EOY24724.1" /db_xref="Phytozome:POPTR_0001s09320.1" /db_xref="TAIR:AT1G63500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHD7" /translation="MGCGCSKLSACCWSSDQNGSIPEADNVENEDKGEVDDLPAFREY SIETLRMATSGFAVENIVSEHGEKAPNVVYKGKLENQRRIAVKRFNRSAWPDARQFLE EARAVGQLRNHRLANLLGCCCEGEERLLVTEFMPNDTLAKHLFHWEAQPMKWAMRLRV ALHLAQALEYCTSKGRALYHDLNAYRIVFDDEGNPRLSCFGLMKNSRDGKSYSTNLAF TPPEYLRTAGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQMLTDSCLEG QFSNDDGTELVRLASRCLQYEPRERPNPKSLVTALNPLQRDTEVVPSHVLMGILHGAA ALPLSPLGEACLRMDLTAIHEVLEKLGYKDDEGAATELSFQMWTNQMQETLTSKKKGD VAFRHKDFRAAMECYTQQFIDVGTMVSPTVYARRSLSYLMSDMPQEAFNDASQAQLVS PIWHIASYLQAAALFALGKEDEAQAALRDASALETKRNATA" CDS join(32032152..32032233,32032323..32032543, 32032941..32033076,32033334..32033467,32033549..32033654, 32034259..32034344,32034925..32035113,32035501..32035653, 32036432..32036545,32036912..32037157) /locus_tag="TCM_016247" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005349t1" /codon_start=1 /product="Kinase protein with tetratricopeptide repeat domain isoform 1" /protein_id="EOY24721.1" /db_xref="Phytozome:POPTR_0001s09320.1" /db_xref="TAIR:AT1G63500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHD7" /translation="MGCGCSKLSACCWSSDQNGSIPEADNVENEDKGEVDDLPAFREY SIETLRMATSGFAVENIVSEHGEKAPNVVYKGKLENQRRIAVKRFNRSAWPDARQFLE EARAVGQLRNHRLANLLGCCCEGEERLLVTEFMPNDTLAKHLFHWEAQPMKWAMRLRV ALHLAQALEYCTSKGRALYHDLNAYRIVFDDEGNPRLSCFGLMKNSRDGKSYSTNLAF TPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQMLTDSCLEGQ FSNDDGTELVRLASRCLQYEPRERPNPKSLVTALNPLQRDTEVPSHVLMGILHGAAAL PLSPLGEACLRMDLTAIHEVLEKLGYKDDEGAATELSFQMWTNQMQETLTSKKKGDVA FRHKDFRAAMECYTQFIDVGTMVSPTVYARRSLSYLMSDMPQEAFNDASQAQLVSPIW HIASYLQAAALFALGKEDEAQAALRDASALETKRNATA" CDS join(32032152..32032233,32032323..32032543, 32032941..32033076,32033334..32033467,32033549..32033654, 32034259..32034344,32034925..32035113,32035501..32035653, 32036432..32036545,32036912..32037157) /locus_tag="TCM_016247" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005349t1" /codon_start=1 /product="Kinase protein with tetratricopeptide repeat domain isoform 1" /protein_id="EOY24722.1" /db_xref="Phytozome:POPTR_0001s09320.1" /db_xref="TAIR:AT1G63500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHD7" /translation="MGCGCSKLSACCWSSDQNGSIPEADNVENEDKGEVDDLPAFREY SIETLRMATSGFAVENIVSEHGEKAPNVVYKGKLENQRRIAVKRFNRSAWPDARQFLE EARAVGQLRNHRLANLLGCCCEGEERLLVTEFMPNDTLAKHLFHWEAQPMKWAMRLRV ALHLAQALEYCTSKGRALYHDLNAYRIVFDDEGNPRLSCFGLMKNSRDGKSYSTNLAF TPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQMLTDSCLEGQ FSNDDGTELVRLASRCLQYEPRERPNPKSLVTALNPLQRDTEVPSHVLMGILHGAAAL PLSPLGEACLRMDLTAIHEVLEKLGYKDDEGAATELSFQMWTNQMQETLTSKKKGDVA FRHKDFRAAMECYTQFIDVGTMVSPTVYARRSLSYLMSDMPQEAFNDASQAQLVSPIW HIASYLQAAALFALGKEDEAQAALRDASALETKRNATA" CDS join(32032152..32032233,32032323..32032543, 32032941..32033076,32033334..32033467,32033549..32033654, 32034259..32034344,32034925..32035113,32035501..32035653, 32036432..32036545,32036912..32037157) /locus_tag="TCM_016247" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005349t1" /codon_start=1 /product="Kinase protein with tetratricopeptide repeat domain isoform 1" /protein_id="EOY24723.1" /db_xref="Phytozome:POPTR_0001s09320.1" /db_xref="TAIR:AT1G63500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHD7" /translation="MGCGCSKLSACCWSSDQNGSIPEADNVENEDKGEVDDLPAFREY SIETLRMATSGFAVENIVSEHGEKAPNVVYKGKLENQRRIAVKRFNRSAWPDARQFLE EARAVGQLRNHRLANLLGCCCEGEERLLVTEFMPNDTLAKHLFHWEAQPMKWAMRLRV ALHLAQALEYCTSKGRALYHDLNAYRIVFDDEGNPRLSCFGLMKNSRDGKSYSTNLAF TPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQMLTDSCLEGQ FSNDDGTELVRLASRCLQYEPRERPNPKSLVTALNPLQRDTEVPSHVLMGILHGAAAL PLSPLGEACLRMDLTAIHEVLEKLGYKDDEGAATELSFQMWTNQMQETLTSKKKGDVA FRHKDFRAAMECYTQFIDVGTMVSPTVYARRSLSYLMSDMPQEAFNDASQAQLVSPIW HIASYLQAAALFALGKEDEAQAALRDASALETKRNATA" gene complement(32038045..32040572) /locus_tag="TCM_016249" /note="dbxref CacaoGD:Thecc1EG016249" mRNA complement(join(32038045..32038971,32039409..32039678, 32039886..32040572)) /locus_tag="TCM_016249" /product="Beta-6 tubulin" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400025186" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040995t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09330.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10581t1" CDS complement(join(32038301..32038971,32039409..32039678, 32039886..32040279)) /locus_tag="TCM_016249" /note="paralog of Thecc1EG040995t1" /codon_start=1 /product="Beta-6 tubulin" /protein_id="EOY24725.1" /db_xref="Phytozome:POPTR_0001s09330.1" /db_xref="TAIR:AT5G12250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q01GL4" /translation="MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPRGNYVGDCRVQL ERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRTGPYGQLFRPDNFVFGQNGAGNNWA KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYP DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT NPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR GSQQYRALTIPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQ NKNSSYFVEWIPNNVKSSVCDIPPTGLTMSSTFMGNSTSIQEMFRRVSEQFTVMFRRK AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVADQDGEEYEEEAMEN" gene complement(32041777..32048768) /locus_tag="TCM_016250" /note="dbxref CacaoGD:Thecc1EG016250" mRNA complement(join(32041777..32042045,32042194..32042729, 32042964..32043033,32043143..32043223,32043514..32043606, 32044111..32044191,32044284..32044373,32044547..32044640, 32044811..32044879,32044964..32045034,32045112..32045180, 32045260..32045343,32045538..32045630,32045994..32046101, 32046308..32046458,32047529..32047873,32048477..32048672)) /locus_tag="TCM_016250" /product="Glutamate-cysteine ligase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011214" /inference="similar to AA sequence:ricco:30190.m011214" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04764t00001" mRNA complement(join(32042232..32042729,32042964..32043033, 32043143..32043223,32043514..32043606,32044111..32044191, 32044284..32044373,32044547..32044640,32044811..32044879, 32044964..32045034,32045112..32045180,32045260..32045343, 32045538..32045630,32045994..32046101,32046308..32046458, 32047529..32047873,32048477..32048768)) /locus_tag="TCM_016250" /product="Glutamate-cysteine ligase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011214" /inference="similar to AA sequence:ricco:30190.m011214" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10662t4; alternateUTRof:Thecc1EG016250t1; inference alignment:Newbler:10:TSA:cgbaP2_g04764t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc151t12" CDS complement(join(32042641..32042729,32042964..32043033, 32043143..32043223,32043514..32043606,32044111..32044191, 32044284..32044373,32044547..32044640,32044811..32044879, 32044964..32045034,32045112..32045180,32045260..32045343, 32045538..32045630,32045994..32046101,32046308..32046458, 32047529..32047863)) /locus_tag="TCM_016250" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011214" /codon_start=1 /product="Glutamate-cysteine ligase isoform 1" /protein_id="EOY24726.1" /db_xref="TAIR:AT4G23100.3" /db_xref="UniProtKB/TrEMBL:UniRef50_P46309" /translation="MALSKAGSSYCIPSDITWGRTGQNVAFGVVNNLEAPIMKEKSVS FSSLLCNKAKIARIFPLETVGFGRKRRNSMIVAASPPTEDAVIATEPLTKEDLVAYLA SGCKPKEKWRIGTEHEKFGFEFKTLRPMKYEQIAELLNGISERFDWDKVMEGDNIIGL KQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPR WGIKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGL ALQPIATALFANSPFSEGKPNGYLSMRSQIWTDTDKNRTGMLPFVFDDSFGFEQYVEY ALDVPMYFVYRKKKYIDCTGMTFRDFLAGKLPCIPGELPTLNDWENHLTTIFPEVRLK RYLEMRGADGGPWRRLCALPAFWVGLLYDEVSLQNILDMIADWTPEEREMLRNKVPKT GLKTPFRDGFLQHVAEDVLTLAKDGLERRGFKESGFLNAVADVVRTGVTPAEKLLELY HGKWGQSVDPVFEELLY" CDS complement(join(32042641..32042729,32042964..32043033, 32043143..32043223,32043514..32043606,32044111..32044191, 32044284..32044373,32044547..32044640,32044811..32044879, 32044964..32045034,32045112..32045180,32045260..32045343, 32045538..32045630,32045994..32046101,32046308..32046458, 32047529..32047863)) /locus_tag="TCM_016250" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011214" /codon_start=1 /product="Glutamate-cysteine ligase isoform 1" /protein_id="EOY24727.1" /db_xref="TAIR:AT4G23100.3" /db_xref="UniProtKB/TrEMBL:UniRef50_P46309" /translation="MALSKAGSSYCIPSDITWGRTGQNVAFGVVNNLEAPIMKEKSVS FSSLLCNKAKIARIFPLETVGFGRKRRNSMIVAASPPTEDAVIATEPLTKEDLVAYLA SGCKPKEKWRIGTEHEKFGFEFKTLRPMKYEQIAELLNGISERFDWDKVMEGDNIIGL KQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPR WGIKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGL ALQPIATALFANSPFSEGKPNGYLSMRSQIWTDTDKNRTGMLPFVFDDSFGFEQYVEY ALDVPMYFVYRKKKYIDCTGMTFRDFLAGKLPCIPGELPTLNDWENHLTTIFPEVRLK RYLEMRGADGGPWRRLCALPAFWVGLLYDEVSLQNILDMIADWTPEEREMLRNKVPKT GLKTPFRDGFLQHVAEDVLTLAKDGLERRGFKESGFLNAVADVVRTGVTPAEKLLELY HGKWGQSVDPVFEELLY" gene complement(32049078..32052981) /locus_tag="TCM_016251" /note="dbxref CacaoGD:Thecc1EG016251" mRNA complement(join(32049078..32049353,32050967..32052579, 32052917..32052981)) /locus_tag="TCM_016251" /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025079t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09350.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07270t00001" mobile_element 32049666..32049877 /note="source:scaffold_7_CACTA_0795 2846 3060" /mobile_element_type="transposon:TIR/CACTA" CDS complement(32051231..32052379) /locus_tag="TCM_016251" /note="paralog of Thecc1EG025079t1" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein" /protein_id="EOY24728.1" /db_xref="Phytozome:POPTR_0001s09350.1" /db_xref="TAIR:AT4G11570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDD5" /translation="MAVMETIATTSLLGRHPLRGRISVRDFSCKQKSSNYQFPVTEFI GRRIVLSHPLPRLKGDRLVNSSVKARAIELTKEVHAYREEERTQRNWNYGIDTGKDRK PKLWPPENRADRPSLHNPLFRQERMGCGWFAAIFEWEGVIIKDNPELEKQAWLALAEE EGKSPPPAFTLRRIEGMKNKQAISEILCWSRDPAEVKRMAARKEDMYQALQGGVYRFC AGSIEFVDVLMQYKIPMALVSTRPRETLESAIRKIGIEGCFSAIVAAEDVYRGKPDPE MFLYAAQLLKFISERCIVFGNSNQTVEAAHDARMKCVAVANKHRVYELGAADLVVRRL DELSVVDLKNLADMESAEFGSGEPKLEMETEEEEDSPSTSTAVDDSIF" gene complement(32053223..32056471) /locus_tag="TCM_016252" /note="dbxref CacaoGD:Thecc1EG016252" mRNA complement(join(32053223..32054809,32054899..32055184, 32055674..32056471)) /locus_tag="TCM_016252" /product="RING/FYVE/PHD zinc finger superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29780.m001396" /inference="similar to AA sequence:ricco:29780.m001396" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc9908t1" CDS complement(join(32053423..32054809,32054899..32055184, 32055674..32055980)) /locus_tag="TCM_016252" /note="dbxref ricco:29780.m001396" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein" /protein_id="EOY24729.1" /db_xref="TAIR:AT5G22260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVQ6" /translation="MSSHLDVGAAYCRKRRRGGERVFKFRSFGENGCPVEFDGSFRDN VNALLEYGHLESNLCNGMLSWSFQLEVHRHPPLHTLLFVVEEPIEASISLYCKHCQYV GWGHHMICNKKYHFLLPSKDAVAACFSCGESNLDDPNPEKGKFNLVELQGHIMHGVFH SNGFGHLLCVNGVEMGSDLAGYQIMDFWDRLCTGLQARKVSLNDTSRKRGMELRLLHG VAYGEPWFGRWGYKFGRGCYGVNEPIYQKAIEAIQGMPLCLLNHHLSISYNDISVIFS RYQALADHSMVTLGDLFDFMLGLRSRLPKENSIDSCNPAILVETSCRWSHKRVEAATR VIVEALKRAEFRWVSRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRCLNPVT KVLEYCLEDISTVFPNPETLLLNNSKVKPRCKITKAQLMKDISFLFKHILKEQKPTLS TGIFSSIPMAARIILDTKFLAKEYSEELSMKVKSSLNGKFKLFCTVILRNDEEIDEGL KKPMLPCECVTLQETATINDLKLEVEKNFRQVYWRLRSFVVETIVNLNAKGSDLVLGS VEMGQTIVVVGSNDDQTGMIMNEVMMCEWGLNSRIVECPCGAREDDGERLISCDICEV WQHTRCVRIPNNEEIPHVFLCKQCEEKIMFLPSLP" gene 32056856..32059131 /locus_tag="TCM_016253" /note="dbxref CacaoGD:Thecc1EG016253" mRNA join(32056856..32057165,32058123..32059131) /locus_tag="TCM_016253" /product="Rpr2/Rpp21 subunit-like protein" /inference="alignment:exonerate-protein:2:frave:gene00823" /inference="similar to AA sequence:ricco:29691.m000284" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1588t1" CDS join(32056885..32057165,32058123..32058711) /locus_tag="TCM_016253" /note="dbxref ricco:29691.m000284" /codon_start=1 /product="Rpr2/Rpp21 subunit-like protein" /protein_id="EOY24730.1" /db_xref="TAIR:AT5G41270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCB4" /translation="MGKRGGGAKRAANTPSKFQKTISLREEASGRKQTKGGSTNVKAI LKNEHLQNLAVWASGEASIPSLASFFGHQLAADGEASSIPPDSSFFPCQRCETILQPG FNCTVRIEKNRAKARHRRKKPHILTQNSVVYNCHFCSHRNLKRGTPKGHMKEMYPPKL KASSIPKVVKSRLKKSVTSSGKETNKDELNKVDVISLPTIAAEDPTTDGPMTPLSRGR TLLDGKKRNRNKSGSKRPAESENNLTTLDAGKTVGTSSKRRRKSWMSLSEIVQSSEDN HGNVPNSRIPFLL" gene 32060268..32072101 /locus_tag="TCM_016254" /note="dbxref CacaoGD:Thecc1EG016254" mRNA join(32060268..32060537,32061452..32061514, 32061610..32062371,32062523..32062657,32062750..32062833, 32063303..32063362,32063465..32063551,32064886..32065086, 32066971..32067167,32068363..32070271,32070797..32071324, 32071839..32072101) /locus_tag="TCM_016254" /product="Bromo-adjacent domain-containing protein" /inference="alignment:exonerate-protein:2:frave:gene32482" /inference="similar to AA sequence:frave:gene32482" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1024t1" CDS join(32060301..32060537,32061452..32061514, 32061610..32062371,32062523..32062657,32062750..32062833, 32063303..32063362,32063465..32063551,32064886..32065086, 32066971..32067167,32068363..32070271,32070797..32071120) /locus_tag="TCM_016254" /note="dbxref frave:gene32482" /codon_start=1 /product="Bromo-adjacent domain-containing protein" /protein_id="EOY24731.1" /db_xref="TAIR:AT4G11560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKH7" /translation="MKLQEEDDEEVEERELKKKKRKKKRDEYEEEEEEEVEEEEEGVQ EDAKPIGESVRFSGKGRGRRSHYEAFEFDGNRYDLEDPVLLVPEDKEQKPYVAIIKDI SQTKDGSIMVTGQWFYRPEEAERKGGGSWQSRDTRELFYSFHRDGVPAESVMHKCVVH FVPIHKQLPNRKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQHEIDLLVQKTLSRLG DLPDIETDDTAAVIDQEDQLKAKRTLRKKNMSPLDVSRDDEGTTRSDQHLRAETPGSC TSNTTEYYTILSKFKVLTGETHRDKWMERLLQGVQYMCSSPDSMHIDDKGKGGSDSVE REKGTKSSGAANGSLEKTLNGGKSFLWPDAAVPAVTALEKASHDSLSSDFQKYNQKLR QLVFNLKNNPLLARRLLNGELEPSTILNMSPNELKEGLTAEETAKKEPDESERMQMTD ARCSRCMEFKVGLRDIIQAGHGDRYQLECIACGNSWYASRDEASSLTIEPSSSVRGAR MGASAMTKPEIPEKKLVSPWESSVMTKLEIPEKKLLKGKYHTHIQHSQQAYDELEQHC FFTRHEQKLSSSLSLPWSSCERKQILTLHSHSHFRSKHNLRHRTVNVSMGLEMDSDLE KNCTLGLSPNTVLPSPRQCPNIEKRYPKGKPGHKDDLLRAKEAFTEISFHRYRSASCK NIQSRPDGPEGNAELKRGSIYQSSKEVRKMKKTGSVEGRRKIELSRSSDSSFSFRIVD SLCNSEEESSQERNPVMSGGSNLKSASITKPCLETCSSDDFIEICLSSNKRGKQSVET VGTDSKRDISFGCEPVVSPLDDGNDLVGKDTVSNLHKSHSPKVEVPHSPSSSESDWFS KASSRARFSPIRKMFDPFMKSKSLRSPLGYVAEADNVKTIGMENMRRNRTFRKSLLHD FSHSPQNSELDSQFIKKDSIQSPVASSPVHLHGCLKVGVKQGVPFFEFSMNQPEDVFL AKTWKADNAFNWVYTFHSIGNRKKSNASIWGLSDSSKDSSIVAQMQVSCCLCSEIKDG GVLDNSMVTEFVLYDIAHARQHVSVLGSSGFDKTSTCSSPGLAVGCYESDDGFNLVKL RDHLNLASDSDEFELPSRSTPRLLADLHPNLEIAAIVIQVPFKKRESLKYRRGDKIGD VRHLNVLNVSTVEESKSNIQDSRSQEKVKVVIPTGNHGIPSSETQGPSSLLDRWRMGG GCDCGGWDMACPLVVFGNPSINCSEDQPLVDSERPFELFLQGAKEITPALTMTAIEGG YAVDFHAKLSTLQAFSICVAILHGTETSAGAGEAQSKHLSHCNSLKVLIEEEVKFLIE SVTGEEKKVSKKVEAIPPSYVINPPFSPIARV" gene complement(32072279..32077649) /locus_tag="TCM_016255" /note="dbxref CacaoGD:Thecc1EG016255" mRNA complement(join(32072279..32073019,32073094..32073124, 32073200..32073420,32073692..32073777,32074210..32074293, 32074426..32074503,32074788..32074887,32075082..32075206, 32075403..32075521,32075633..32076964,32077319..32077414, 32077506..32077618)) /locus_tag="TCM_016255" /product="Mitochondrial substrate carrier family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019754001" /inference="similar to AA sequence:Phytozome:GSVIVT01019754001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1365t10_C2" mRNA complement(join(32072757..32073019,32073094..32073320, 32074210..32074293,32074426..32074503,32074788..32074887, 32075082..32075206,32075403..32075521,32075633..32076964, 32077506..32077619)) /locus_tag="TCM_016255" /product="Mitochondrial substrate carrier family protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019754001" /inference="similar to AA sequence:Phytozome:GSVIVT01019754001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1365t8_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1365t10_C2" mRNA complement(join(32072757..32073019,32073094..32073420, 32073692..32073777,32074210..32074293,32074426..32074503, 32074788..32074887,32075082..32075206,32075403..32075521, 32075633..32076964,32077506..32077619)) /locus_tag="TCM_016255" /product="Mitochondrial substrate carrier family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019754001" /inference="similar to AA sequence:Phytozome:GSVIVT01019754001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1365t10_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1365t10_C2" mRNA complement(join(32072757..32073019,32073094..32073420, 32073692..32073777,32074210..32074293,32074426..32074503, 32074788..32074887,32075063..32075206,32075403..32075521, 32075633..32076964,32077506..32077619)) /locus_tag="TCM_016255" /product="Mitochondrial substrate carrier family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019754001" /inference="similar to AA sequence:Phytozome:POPTR_0003s12770.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1365t7_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1365t10_C2" CDS complement(join(32072926..32073019,32073094..32073124, 32073200..32073420,32073692..32073777,32074210..32074293, 32074426..32074503,32074788..32074887,32075082..32075206, 32075403..32075521,32075633..32076896)) /locus_tag="TCM_016255" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 1" /protein_id="EOY24732.1" /db_xref="Phytozome:GSVIVT01019754001" /db_xref="TAIR:AT4G11440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCC2" /translation="MPASKNPCRSDQPSIKYRWRADEGAFFEVGKLVPEEYAPSLPDK NRKSRTKSETKEPEILSTAELISSLNQIWNCASRLTIFQQQANLDRNHFVSQKEDILV NLGREENGTGSISADSKYFCVDLGTASQLPPAMKPNFKFVKITKKMSMFDFCNKNPKC SFYQGLLCCGTDLSNKSWKAKGLSAVGFSYEFGNVYKWMREMIPGGLKYYVNVQTENK KLGKYCDVGGTSSDSGGCISADRTNPTDNLPTENAEPYSHCIKSIDSSILHDAKLVMD TRRTTSLCSDYFLTSVQETKANCSVSRTPDSNLCADYHINVLASCSSTYKECQHLSDG NECLKNERKQPEPFSTEDDSRMESHSTASEKPQFALAKQEHAFAGAFAGIFVSLCLHP VDTVKTVIQSCRAEQKSICFIGRSIISERGLTGLYRGIASNIASSAPISALYTFSYES VKGALLPLFPKEYHSLAHCMAGGCASIATSFIFTPSERVKQQMQVGVHYQNCWNALVG IVKKGGLPSLYTGWGAVLCRNVPHSIIKFYTYESLKQVMLTSLQSSAQPNTLQTLVCG GLAGSTAALFTTPFDVVKTRLQTQIPGSSSQYNSVYHALQDIRAQEGLKGLYRGLIPR LVMYVSQGALFFASYEFFKQLFSLEVPQFIIQKQHMENQDNSPSQLPSPLPSASTPMP RTSPSASGLHVFWLIQETFLRLRFFVLIEDVGKYNVSGMAGASRPVITAMF" CDS complement(join(32073186..32073320,32074210..32074293, 32074426..32074503,32074788..32074887,32075082..32075206, 32075403..32075521,32075633..32076896)) /locus_tag="TCM_016255" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein, putative isoform 4" /protein_id="EOY24735.1" /db_xref="Phytozome:GSVIVT01019754001" /db_xref="TAIR:AT4G11440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCC2" /translation="MPASKNPCRSDQPSIKYRWRADEGAFFEVGKLVPEEYAPSLPDK NRKSRTKSETKEPEILSTAELISSLNQIWNCASRLTIFQQQANLDRNHFVSQKEDILV NLGREENGTGSISADSKYFCVDLGTASQLPPAMKPNFKFVKITKKMSMFDFCNKNPKC SFYQGLLCCGTDLSNKSWKAKGLSAVGFSYEFGNVYKWMREMIPGGLKYYVNVQTENK KLGKYCDVGGTSSDSGGCISADRTNPTDNLPTENAEPYSHCIKSIDSSILHDAKLVMD TRRTTSLCSDYFLTSVQETKANCSVSRTPDSNLCADYHINVLASCSSTYKECQHLSDG NECLKNERKQPEPFSTEDDSRMESHSTASEKPQFALAKQEHAFAGAFAGIFVSLCLHP VDTVKTVIQSCRAEQKSICFIGRSIISERGLTGLYRGIASNIASSAPISALYTFSYES VKGALLPLFPKEYHSLAHCMAGGCASIATSFIFTPSERVKQQMQVGVHYQNCWNALVG IVKKGGLPSLYTGWGAVLCRNVPHSIIKFYTYESLKQVMLTSLQSSAQPNTLQTLVCG GLAGSTAALFTTPFDVVKTRLQTQFIIQKQHMENQDNSPSQLPSPLPSASTPMPRTSP SASGLHGFHS" CDS complement(join(32073186..32073420,32073692..32073777, 32074210..32074293,32074426..32074503,32074788..32074887, 32075082..32075206,32075403..32075521,32075633..32076896)) /locus_tag="TCM_016255" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein, putative isoform 3" /protein_id="EOY24734.1" /db_xref="Phytozome:GSVIVT01019754001" /db_xref="TAIR:AT4G11440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCC2" /translation="MPASKNPCRSDQPSIKYRWRADEGAFFEVGKLVPEEYAPSLPDK NRKSRTKSETKEPEILSTAELISSLNQIWNCASRLTIFQQQANLDRNHFVSQKEDILV NLGREENGTGSISADSKYFCVDLGTASQLPPAMKPNFKFVKITKKMSMFDFCNKNPKC SFYQGLLCCGTDLSNKSWKAKGLSAVGFSYEFGNVYKWMREMIPGGLKYYVNVQTENK KLGKYCDVGGTSSDSGGCISADRTNPTDNLPTENAEPYSHCIKSIDSSILHDAKLVMD TRRTTSLCSDYFLTSVQETKANCSVSRTPDSNLCADYHINVLASCSSTYKECQHLSDG NECLKNERKQPEPFSTEDDSRMESHSTASEKPQFALAKQEHAFAGAFAGIFVSLCLHP VDTVKTVIQSCRAEQKSICFIGRSIISERGLTGLYRGIASNIASSAPISALYTFSYES VKGALLPLFPKEYHSLAHCMAGGCASIATSFIFTPSERVKQQMQVGVHYQNCWNALVG IVKKGGLPSLYTGWGAVLCRNVPHSIIKFYTYESLKQVMLTSLQSSAQPNTLQTLVCG GLAGSTAALFTTPFDVVKTRLQTQIPGSSSQYNSVYHALQDIRAQEGLKGLYRGLIPR LVMYVSQGALFFASYEFFKQLFSLEVPQFIIQKQHMENQDNSPSQLPSPLPSASTPMP RTSPSASGLHGFHS" mRNA complement(join(32073394..32073527,32073692..32073777, 32074210..32074293,32074426..32074503,32074788..32074887, 32075082..32075206,32075403..32075521,32075633..32076964, 32077506..32077619)) /locus_tag="TCM_016255" /product="Mitochondrial substrate carrier family protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019754001" /inference="similar to AA sequence:Phytozome:GSVIVT01019754001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1352t2_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1365t10_C2" mRNA complement(join(32073394..32073420,32073692..32073777, 32074210..32074293,32074426..32074887,32075082..32075206, 32075403..32075521,32075633..32076964,32077506..32077619)) /locus_tag="TCM_016255" /product="Mitochondrial substrate carrier family protein, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019754001" /inference="similar to AA sequence:Phytozome:POPTR_0003s12770.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1352t4_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1365t10_C2" CDS complement(join(32073449..32073527,32073692..32073777, 32074210..32074293,32074426..32074503,32074788..32074887, 32075082..32075206,32075403..32075521,32075633..32076896)) /locus_tag="TCM_016255" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein, putative isoform 5" /protein_id="EOY24736.1" /db_xref="Phytozome:GSVIVT01019754001" /db_xref="TAIR:AT4G11440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCC2" /translation="MPASKNPCRSDQPSIKYRWRADEGAFFEVGKLVPEEYAPSLPDK NRKSRTKSETKEPEILSTAELISSLNQIWNCASRLTIFQQQANLDRNHFVSQKEDILV NLGREENGTGSISADSKYFCVDLGTASQLPPAMKPNFKFVKITKKMSMFDFCNKNPKC SFYQGLLCCGTDLSNKSWKAKGLSAVGFSYEFGNVYKWMREMIPGGLKYYVNVQTENK KLGKYCDVGGTSSDSGGCISADRTNPTDNLPTENAEPYSHCIKSIDSSILHDAKLVMD TRRTTSLCSDYFLTSVQETKANCSVSRTPDSNLCADYHINVLASCSSTYKECQHLSDG NECLKNERKQPEPFSTEDDSRMESHSTASEKPQFALAKQEHAFAGAFAGIFVSLCLHP VDTVKTVIQSCRAEQKSICFIGRSIISERGLTGLYRGIASNIASSAPISALYTFSYES VKGALLPLFPKEYHSLAHCMAGGCASIATSFIFTPSERVKQQMQVGVHYQNCWNALVG IVKKGGLPSLYTGWGAVLCRNVPHSIIKFYTYESLKQVMLTSLQSSAQPNTLQTLVCG GLAGSTAALFTTPFDVVKTRLQTQIPGSSSQYNSVYHALQDIRAQEGLKGLYSFYRLV QLLFFNYPTRVLHPVAACMR" mRNA complement(join(<32073755..32073777,32074210..32074293, 32074426..32074503,32074788..32074887,32075082..32075206, 32075403..32075521,32075633..32077069,32077232..32077255, 32077319..32077649)) /locus_tag="TCM_016255" /product="Mitochondrial substrate carrier family protein, putative isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019754001" /inference="similar to AA sequence:Phytozome:GSVIVT01019754001" /note="transcript variant 8; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1352t8; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1365t10_C2" mRNA complement(join(32073755..32073777,32074210..32074293, 32074426..32074887,32075082..32075206,32075403..32075521, 32075633..32077069,32077232..32077255,32077319..32077649)) /locus_tag="TCM_016255" /product="Mitochondrial substrate carrier family protein, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019754001" /inference="similar to AA sequence:Phytozome:POPTR_0003s12770.1" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1352t4; alternateUTRof:Thecc1EG016255t6; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1365t10_C2" mRNA complement(join(32073755..32073777,32074210..32074293, 32074426..32074503,32074788..32074887,32075063..32075206, 32075403..32075521,32075633..32076964,32077319..32077530)) /locus_tag="TCM_016255" /product="Mitochondrial substrate carrier family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019754001" /inference="similar to AA sequence:Phytozome:POPTR_0003s12770.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1157t8; alternateUTRof:Thecc1EG016255t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1365t10_C2" CDS complement(join(<32073757..32073777,32074210..32074293, 32074426..32074503,32074788..32074887,32075082..32075206, 32075403..32075521,32075633..32076896)) /locus_tag="TCM_016255" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein, putative isoform 8" /protein_id="EOY24739.1" /db_xref="Phytozome:GSVIVT01019754001" /db_xref="TAIR:AT4G11440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCC2" /translation="MPASKNPCRSDQPSIKYRWRADEGAFFEVGKLVPEEYAPSLPDK NRKSRTKSETKEPEILSTAELISSLNQIWNCASRLTIFQQQANLDRNHFVSQKEDILV NLGREENGTGSISADSKYFCVDLGTASQLPPAMKPNFKFVKITKKMSMFDFCNKNPKC SFYQGLLCCGTDLSNKSWKAKGLSAVGFSYEFGNVYKWMREMIPGGLKYYVNVQTENK KLGKYCDVGGTSSDSGGCISADRTNPTDNLPTENAEPYSHCIKSIDSSILHDAKLVMD TRRTTSLCSDYFLTSVQETKANCSVSRTPDSNLCADYHINVLASCSSTYKECQHLSDG NECLKNERKQPEPFSTEDDSRMESHSTASEKPQFALAKQEHAFAGAFAGIFVSLCLHP VDTVKTVIQSCRAEQKSICFIGRSIISERGLTGLYRGIASNIASSAPISALYTFSYES VKGALLPLFPKEYHSLAHCMAGGCASIATSFIFTPSERVKQQMQVGVHYQNCWNALVG IVKKGGLPSLYTGWGAVLCRNVPHSIIKFYTYESLKQVMLTSLQSSAQPNTLQTLVCG GLAGSTAALFTTPFDVVKTRLQTQIPGSSSQ" mRNA complement(join(32074265..32074503,32074788..32074887, 32075082..32075206,32075403..32075521,32075633..32076964, 32077506..32077619)) /locus_tag="TCM_016255" /product="Mitochondrial substrate carrier family protein, putative isoform 10" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019754001" /inference="similar to AA sequence:Phytozome:GSVIVT01019754001" /note="transcript variant 11; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1352t5_C2; alternateUTRof:Thecc1EG016255t10; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1365t10_C2" mRNA complement(join(32074268..32074503,32074788..32074887, 32075082..32075206,32075403..32075521,32075633..32077069, 32077232..32077255,32077319..32077649)) /locus_tag="TCM_016255" /product="Mitochondrial substrate carrier family protein, putative isoform 10" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019754001" /inference="similar to AA sequence:Phytozome:GSVIVT01019754001" /note="transcript variant 10; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1352t5; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1365t10_C2" CDS complement(join(32074318..32074503,32074788..32074887, 32075082..32075206,32075403..32075521,32075633..32076896)) /locus_tag="TCM_016255" /note="encoded by transcript variant 10; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein, putative isoform 10" /protein_id="EOY24741.1" /db_xref="Phytozome:GSVIVT01019754001" /db_xref="TAIR:AT4G11440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCC2" /translation="MPASKNPCRSDQPSIKYRWRADEGAFFEVGKLVPEEYAPSLPDK NRKSRTKSETKEPEILSTAELISSLNQIWNCASRLTIFQQQANLDRNHFVSQKEDILV NLGREENGTGSISADSKYFCVDLGTASQLPPAMKPNFKFVKITKKMSMFDFCNKNPKC SFYQGLLCCGTDLSNKSWKAKGLSAVGFSYEFGNVYKWMREMIPGGLKYYVNVQTENK KLGKYCDVGGTSSDSGGCISADRTNPTDNLPTENAEPYSHCIKSIDSSILHDAKLVMD TRRTTSLCSDYFLTSVQETKANCSVSRTPDSNLCADYHINVLASCSSTYKECQHLSDG NECLKNERKQPEPFSTEDDSRMESHSTASEKPQFALAKQEHAFAGAFAGIFVSLCLHP VDTVKTVIQSCRAEQKSICFIGRSIISERGLTGLYRGIASNIASSAPISALYTFSYES VKGALLPLFPKEYHSLAHCMAGGCASIATSFIFTPSERVKQQMQVGVHYQNCWNALVG IVKKGGLPSLYTGWGAVLCRNVPHSIIKFYTYESLKQVMLTSLQSSAQPNTLQTVCLL GSFFFKITLIFWQFNLSIFGFCLLKLHLHRR" CDS complement(join(32074318..32074503,32074788..32074887, 32075082..32075206,32075403..32075521,32075633..32076896)) /locus_tag="TCM_016255" /note="encoded by transcript variant 11; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein, putative isoform 10" /protein_id="EOY24742.1" /db_xref="Phytozome:GSVIVT01019754001" /db_xref="TAIR:AT4G11440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCC2" /translation="MPASKNPCRSDQPSIKYRWRADEGAFFEVGKLVPEEYAPSLPDK NRKSRTKSETKEPEILSTAELISSLNQIWNCASRLTIFQQQANLDRNHFVSQKEDILV NLGREENGTGSISADSKYFCVDLGTASQLPPAMKPNFKFVKITKKMSMFDFCNKNPKC SFYQGLLCCGTDLSNKSWKAKGLSAVGFSYEFGNVYKWMREMIPGGLKYYVNVQTENK KLGKYCDVGGTSSDSGGCISADRTNPTDNLPTENAEPYSHCIKSIDSSILHDAKLVMD TRRTTSLCSDYFLTSVQETKANCSVSRTPDSNLCADYHINVLASCSSTYKECQHLSDG NECLKNERKQPEPFSTEDDSRMESHSTASEKPQFALAKQEHAFAGAFAGIFVSLCLHP VDTVKTVIQSCRAEQKSICFIGRSIISERGLTGLYRGIASNIASSAPISALYTFSYES VKGALLPLFPKEYHSLAHCMAGGCASIATSFIFTPSERVKQQMQVGVHYQNCWNALVG IVKKGGLPSLYTGWGAVLCRNVPHSIIKFYTYESLKQVMLTSLQSSAQPNTLQTVCLL GSFFFKITLIFWQFNLSIFGFCLLKLHLHRR" CDS complement(join(32074490..32074503,32074788..32074887, 32075063..32075206,32075403..32075521,32075633..32076896)) /locus_tag="TCM_016255" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein, putative isoform 2" /protein_id="EOY24733.1" /db_xref="Phytozome:POPTR_0003s12770.1" /db_xref="TAIR:AT4G11440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWI9" /translation="MPASKNPCRSDQPSIKYRWRADEGAFFEVGKLVPEEYAPSLPDK NRKSRTKSETKEPEILSTAELISSLNQIWNCASRLTIFQQQANLDRNHFVSQKEDILV NLGREENGTGSISADSKYFCVDLGTASQLPPAMKPNFKFVKITKKMSMFDFCNKNPKC SFYQGLLCCGTDLSNKSWKAKGLSAVGFSYEFGNVYKWMREMIPGGLKYYVNVQTENK KLGKYCDVGGTSSDSGGCISADRTNPTDNLPTENAEPYSHCIKSIDSSILHDAKLVMD TRRTTSLCSDYFLTSVQETKANCSVSRTPDSNLCADYHINVLASCSSTYKECQHLSDG NECLKNERKQPEPFSTEDDSRMESHSTASEKPQFALAKQEHAFAGAFAGIFVSLCLHP VDTVKTVIQSCRAEQKSICFIGRSIISERGLTGLYRGIASNIASSAPISALYTFSYES VKGALLPLFPKEYHSLAHCMAGGCASIATSFIFTPSERVKQQMQVGVHYQNCWYTSKF LECLGWNCEEGGFAFTLHWVGGCTLQECSTLNHQVLHI" CDS complement(join(32074490..32074503,32074788..32074887, 32075063..32075206,32075403..32075521,32075633..32076896)) /locus_tag="TCM_016255" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein, putative isoform 2" /protein_id="EOY24738.1" /db_xref="Phytozome:POPTR_0003s12770.1" /db_xref="TAIR:AT4G11440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWI9" /translation="MPASKNPCRSDQPSIKYRWRADEGAFFEVGKLVPEEYAPSLPDK NRKSRTKSETKEPEILSTAELISSLNQIWNCASRLTIFQQQANLDRNHFVSQKEDILV NLGREENGTGSISADSKYFCVDLGTASQLPPAMKPNFKFVKITKKMSMFDFCNKNPKC SFYQGLLCCGTDLSNKSWKAKGLSAVGFSYEFGNVYKWMREMIPGGLKYYVNVQTENK KLGKYCDVGGTSSDSGGCISADRTNPTDNLPTENAEPYSHCIKSIDSSILHDAKLVMD TRRTTSLCSDYFLTSVQETKANCSVSRTPDSNLCADYHINVLASCSSTYKECQHLSDG NECLKNERKQPEPFSTEDDSRMESHSTASEKPQFALAKQEHAFAGAFAGIFVSLCLHP VDTVKTVIQSCRAEQKSICFIGRSIISERGLTGLYRGIASNIASSAPISALYTFSYES VKGALLPLFPKEYHSLAHCMAGGCASIATSFIFTPSERVKQQMQVGVHYQNCWYTSKF LECLGWNCEEGGFAFTLHWVGGCTLQECSTLNHQVLHI" CDS complement(join(32074740..32074887,32075082..32075206, 32075403..32075521,32075633..32076896)) /locus_tag="TCM_016255" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein, putative isoform 6" /protein_id="EOY24737.1" /db_xref="Phytozome:POPTR_0003s12770.1" /db_xref="TAIR:AT4G11440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWI9" /translation="MPASKNPCRSDQPSIKYRWRADEGAFFEVGKLVPEEYAPSLPDK NRKSRTKSETKEPEILSTAELISSLNQIWNCASRLTIFQQQANLDRNHFVSQKEDILV NLGREENGTGSISADSKYFCVDLGTASQLPPAMKPNFKFVKITKKMSMFDFCNKNPKC SFYQGLLCCGTDLSNKSWKAKGLSAVGFSYEFGNVYKWMREMIPGGLKYYVNVQTENK KLGKYCDVGGTSSDSGGCISADRTNPTDNLPTENAEPYSHCIKSIDSSILHDAKLVMD TRRTTSLCSDYFLTSVQETKANCSVSRTPDSNLCADYHINVLASCSSTYKECQHLSDG NECLKNERKQPEPFSTEDDSRMESHSTASEKPQFALAKQEHAFAGAFAGIFVSLCLHP VDTVKTVIQSCRAEQKSICFIGRSIISERGLTGLYRGIASNIASSAPISALYTFSYES VKGALLPLFPKEYHSLAHCMAGGCASIATSFIFTPSERVKQQMQVGVHYQNCWNALVG IVKKGGLPSLYTGWGAVLCRNVPHSIIKVRSLYMFRLIVFCSM" CDS complement(join(32074740..32074887,32075082..32075206, 32075403..32075521,32075633..32076896)) /locus_tag="TCM_016255" /note="encoded by transcript variant 9; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein, putative isoform 6" /protein_id="EOY24740.1" /db_xref="Phytozome:POPTR_0003s12770.1" /db_xref="TAIR:AT4G11440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWI9" /translation="MPASKNPCRSDQPSIKYRWRADEGAFFEVGKLVPEEYAPSLPDK NRKSRTKSETKEPEILSTAELISSLNQIWNCASRLTIFQQQANLDRNHFVSQKEDILV NLGREENGTGSISADSKYFCVDLGTASQLPPAMKPNFKFVKITKKMSMFDFCNKNPKC SFYQGLLCCGTDLSNKSWKAKGLSAVGFSYEFGNVYKWMREMIPGGLKYYVNVQTENK KLGKYCDVGGTSSDSGGCISADRTNPTDNLPTENAEPYSHCIKSIDSSILHDAKLVMD TRRTTSLCSDYFLTSVQETKANCSVSRTPDSNLCADYHINVLASCSSTYKECQHLSDG NECLKNERKQPEPFSTEDDSRMESHSTASEKPQFALAKQEHAFAGAFAGIFVSLCLHP VDTVKTVIQSCRAEQKSICFIGRSIISERGLTGLYRGIASNIASSAPISALYTFSYES VKGALLPLFPKEYHSLAHCMAGGCASIATSFIFTPSERVKQQMQVGVHYQNCWNALVG IVKKGGLPSLYTGWGAVLCRNVPHSIIKVRSLYMFRLIVFCSM" gene complement(32079574..32088540) /locus_tag="TCM_016257" /note="dbxref CacaoGD:Thecc1EG016257" mRNA complement(join(32079574..32080014,32080236..32080336, 32080694..32081256,32081743..32081906,32082046..32082299, 32082385..32082549,32082808..32082986,32083080..32083186, 32083320..32083499,32083574..32083669,32083787..32083868, 32083945..32084286,32085305..32085334,32085424..32085516, 32085610..32085687,32085851..32085934,32086053..32086256, 32086792..32086890,32087026..32087183,32087262..32087420, 32088053..32088388)) /locus_tag="TCM_016257" /product="P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin) domain, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene32491" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012339t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019753001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc501t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc324t2" mRNA complement(join(32079574..32080014,32080236..32080336, 32080694..32081256,32081743..32081906,32082046..32082299, 32082385..32082549,32082808..32082986,32083080..32083186, 32083320..32083499,32083574..32083669,32083787..32083868, 32083945..32084286,32085305..32085334,32085424..32085516, 32085610..32085687,32085851..32085934,32086053..32086256, 32086792..32087183,32087262..32087420,32088053..32088388)) /locus_tag="TCM_016257" /product="P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin) domain, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene32491" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012339t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019753001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc501t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc324t2" mRNA complement(join(32079580..32080014,32080236..32080336, 32080694..32081256,32081743..32081906,32082046..32082299, 32082385..32082624,32082758..32082807,32082882..32082986, 32083080..32083186,32083320..32083499,32083574..32083669, 32083787..32083868,32083945..32084286,32085305..32085334, 32085424..32085516,32085610..32085687,32085851..32085934, 32086053..32086256,32086792..32086890,32087026..32087183, 32087262..32087420,32088053..32088540)) /locus_tag="TCM_016257" /product="P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin) domain, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene32491" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012339t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019753001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc324t2" CDS complement(join(32079947..32080014,32080236..32080336, 32080694..32081256,32081743..32081906,32082046..32082299, 32082385..32082624,32082758..32082807,32082882..32082986, 32083080..32083186,32083320..32083499,32083574..32083669, 32083787..32083868,32083945..32084286,32085305..32085334, 32085424..32085516,32085610..32085687,32085851..32085934, 32086053..32086256,32086792..32086890,32087026..32087183, 32087262..32087349)) /locus_tag="TCM_016257" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012339t1" /codon_start=1 /product="P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin) domain, putative isoform 1" /protein_id="EOY24743.1" /db_xref="Phytozome:GSVIVT01019753001" /db_xref="TAIR:AT1G63640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H6Z8" /translation="MRENGTVNGLNGTHYVDIEDMESFESVISGDWLSSLVEWLNGML PELRLPLDATEEELRGCLTDGAIFCTILNKLRPGSIEMDGSSEGGFVNVKRFLIAMDE MGLPSFELSDLEQGQMMPVLECLKTLRACFNFNGEADNVQNPSRKRWNLSGEIESIQL KQGCYADLSDATILELMKSSSLQNASTQSLFSILYRIMDESIERKKGDVPHRVACLLR TIVQEIEWRVSTRAENLKNQNNVYRAREEKYQSRIRALETLAKGTVEENEVIISQLQH LKIEKSKLEEKGKVEEQDVLQLKKEKIQNDIEISRLREELESSKKMHEWHCLQLDAQV EDAKVELEKKLKELECLLRDSRKEVDQLQSFSESKQKIWAHKECTYQSFIDQQFVALK ELREASKSIKREVLKTKKSYSEELNYLGIKLKGLVDAAENYHSVLAENRRLYNEVQDL KGNIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPSKQGKDTHRLFKFNKVFSPA ATQEEVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPNVSSKEDWGVNYRALN DLFQISQSRKSSTIYEISFILIFWITVSSCVSQNSYTLLIFTLFLLLNMFFVSFDLHT LGIWSTTQPNGLAVPEASMHSVKSTTDVLELMNIGLMNRAVGATALNERSSRSHSVLT VHVRGTDLKTNAVLRGSLHLVDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFA LAQKNAHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVESYSETISTLKFAERVSGV ELGAARTNREGRDIRELMEQVAFLKEAITKKDVEIERLQLLKGNGNGNKHGMSSLRYG SSSPRGHSIGTPRESRSLSRRQSLGNFEKAAFDVDNFSVNSDKHSEAGSHRTMDDSKL HNESSVQTNLAGKDLDQNFADDIELLGFGDADSEERLSDISDGGLSMGGTETDGSICS VVEFTLFPEVSKPSDKVEKVEKADKAEKPDNIEKSIAPSKLPKLPQKVVQTKPVRLSM SRSSSKASSSARKITAVATASSSTKPSKRWQ" CDS complement(join(32079947..32080014,32080236..32080336, 32080694..32081256,32081743..32081906,32082046..32082299, 32082385..32082549,32082808..32082986,32083080..32083186, 32083320..32083499,32083574..32083669,32083787..32083868, 32083945..32084286,32085305..32085334,32085424..32085516, 32085610..32085687,32085851..32085934,32086053..32086256, 32086792..32086890,32087026..32087183,32087262..32087349)) /locus_tag="TCM_016257" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012339t1" /codon_start=1 /product="P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin) domain, putative isoform 2" /protein_id="EOY24744.1" /db_xref="Phytozome:GSVIVT01019753001" /db_xref="TAIR:AT1G63640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H6Z8" /translation="MRENGTVNGLNGTHYVDIEDMESFESVISGDWLSSLVEWLNGML PELRLPLDATEEELRGCLTDGAIFCTILNKLRPGSIEMDGSSEGGFVNVKRFLIAMDE MGLPSFELSDLEQGQMMPVLECLKTLRACFNFNGEADNVQNPSRKRWNLSGEIESIQL KQGCYADLSDATILELMKSSSLQNASTQSLFSILYRIMDESIERKKGDVPHRVACLLR TIVQEIEWRVSTRAENLKNQNNVYRAREEKYQSRIRALETLAKGTVEENEVIISQLQH LKIEKSKLEEKGKVEEQDVLQLKKEKIQNDIEISRLREELESSKKMHEWHCLQLDAQV EDAKVELEKKLKELECLLRDSRKEVDQLQSFSESKQKIWAHKECTYQSFIDQQFVALK ELREASKSIKREVLKTKKSYSEELNYLGIKLKGLVDAAENYHSVLAENRRLYNEVQDL KGNIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPSKQGKDTHRLFKFNKVFSPA ATQEEVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPNVSSKEDWGVNYRALN DLFQISQSRKSSTIYEVGVQMVEIYNEQVRDLLVGDSSHRRLGIWSTTQPNGLAVPEA SMHSVKSTTDVLELMNIGLMNRAVGATALNERSSRSHSVLTVHVRGTDLKTNAVLRGS LHLVDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAQKNAHVPYRNSKLTQ VLQSSLGGQAKTLMFVQLNPDVESYSETISTLKFAERVSGVELGAARTNREGRDIREL MEQVAFLKEAITKKDVEIERLQLLKGNGNGNKHGMSSLRYGSSSPRGHSIGTPRESRS LSRRQSLGNFEKAAFDVDNFSVNSDKHSEAGSHRTMDDSKLHNESSVQTNLAGKDLDQ NFADDIELLGFGDADSEERLSDISDGGLSMGGTETDGSICSVVEFTLFPEVSKPSDKV EKVEKADKAEKPDNIEKSIAPSKLPKLPQKVVQTKPVRLSMSRSSSKASSSARKITAV ATASSSTKPSKRWQ" CDS complement(join(32079947..32080014,32080236..32080336, 32080694..32081256,32081743..32081906,32082046..32082299, 32082385..32082549,32082808..32082986,32083080..32083186, 32083320..32083499,32083574..32083669,32083787..32083868, 32083945..32084286,32085305..32085334,32085424..32085516, 32085610..32085687,32085851..32085934,32086053..32086256, 32086792..32086911)) /locus_tag="TCM_016257" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG012339t1" /codon_start=1 /product="P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin) domain, putative isoform 3" /protein_id="EOY24745.1" /db_xref="Phytozome:GSVIVT01019753001" /db_xref="TAIR:AT1G63640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H6Z8" /translation="MFFLQLQDGSSEGGFVNVKRFLIAMDEMGLPSFELSDLEQGQMM PVLECLKTLRACFNFNGEADNVQNPSRKRWNLSGEIESIQLKQGCYADLSDATILELM KSSSLQNASTQSLFSILYRIMDESIERKKGDVPHRVACLLRTIVQEIEWRVSTRAENL KNQNNVYRAREEKYQSRIRALETLAKGTVEENEVIISQLQHLKIEKSKLEEKGKVEEQ DVLQLKKEKIQNDIEISRLREELESSKKMHEWHCLQLDAQVEDAKVELEKKLKELECL LRDSRKEVDQLQSFSESKQKIWAHKECTYQSFIDQQFVALKELREASKSIKREVLKTK KSYSEELNYLGIKLKGLVDAAENYHSVLAENRRLYNEVQDLKGNIRVYCRIRPFLPGQ SKKQTTIEYIGENGELVVSNPSKQGKDTHRLFKFNKVFSPAATQEEVFLDTQPLIRSV LDGYNVCIFAYGQTGSGKTYTMSGPNVSSKEDWGVNYRALNDLFQISQSRKSSTIYEV GVQMVEIYNEQVRDLLVGDSSHRRLGIWSTTQPNGLAVPEASMHSVKSTTDVLELMNI GLMNRAVGATALNERSSRSHSVLTVHVRGTDLKTNAVLRGSLHLVDLAGSERVDRSEA TGDRLREAQHINKSLSALGDVIFALAQKNAHVPYRNSKLTQVLQSSLGGQAKTLMFVQ LNPDVESYSETISTLKFAERVSGVELGAARTNREGRDIRELMEQVAFLKEAITKKDVE IERLQLLKGNGNGNKHGMSSLRYGSSSPRGHSIGTPRESRSLSRRQSLGNFEKAAFDV DNFSVNSDKHSEAGSHRTMDDSKLHNESSVQTNLAGKDLDQNFADDIELLGFGDADSE ERLSDISDGGLSMGGTETDGSICSVVEFTLFPEVSKPSDKVEKVEKADKAEKPDNIEK SIAPSKLPKLPQKVVQTKPVRLSMSRSSSKASSSARKITAVATASSSTKPSKRWQ" gene complement(32088588..32093013) /locus_tag="TCM_016258" /note="dbxref CacaoGD:Thecc1EG016258" mRNA complement(join(32088588..32088754,32091167..32091299, 32092126..32093013)) /locus_tag="TCM_016258" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09420.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS complement(join(32088704..32088754,32091167..32091299, 32092126..32092613)) /locus_tag="TCM_016258" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24746.1" /translation="MSNEIPIAAANDSTTRNEGDFVFSLALNSLGQETTLVISVSLGF ELCIEAELTEHVSDDNSVEDSNSTLDNDIDELLVDVDSRIRPASKTAIEGLEKVKIRE GLGDERFCSVCLEEMSTEMEARRLPCSHIYHAACIIEWLKNNNKCPLCRYNMPVVDFD LNISEDGSVDGSFNDAAMQMRPASKSAIEGLEEVRIDEKIGTIGHCAKKEYFEEFNCP KCISK" mobile_element complement(32090121..32090217) /note="source:CACAO_M_E12463_F12_scaffold_3 4654 4743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32090164..32090236 /note="source:INTACT415F_F22_scaffold_4-int 2203 2280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32090385..32090490) /note="source:INTACT409F_F47_scaffold_4-int 16156 16266" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(32090682..32090758) /note="source:CACAO_M_E12463_F12_scaffold_3 4583 4642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32092827..32092891 /note="source:CACAO_M_S_E90022_F9_scaffold_8 3087 3152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32092853..32092904) /note="source:CACAO_M_E12463_F12_scaffold_3 4642 4691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32092973..32093129 /note="source:scaffold_7_CACTA_0795 2861 3037" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32093667..32093931) /note="source:CACAO_hAT_E410_scaffold_1 4855 5140" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(32093991..32094105) /note="source:CACAO_hAT_E3863_scaffold_9 137 250" /mobile_element_type="transposon:TIR/hAT" mobile_element 32094024..32094284 /note="source:CACAO_on_SS_E42_scaffold_2 24229 24534" /mobile_element_type="transposon:TIR/Mutator" gene 32095382..32098104 /locus_tag="TCM_016259" /note="dbxref CacaoGD:Thecc1EG016259" mRNA join(32095382..32095734,32096149..32096215, 32096724..32096772,32097655..32097699,32097976..32098104) /locus_tag="TCM_016259" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011222" /inference="similar to AA sequence:frave:gene32493" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02972t00002" CDS join(32095468..32095734,32096149..32096215, 32096724..32096772,32097655..32097699,32097976..32098042) /locus_tag="TCM_016259" /note="dbxref frave:gene32493" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24747.1" /db_xref="TAIR:AT4G23330.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JNI2" /translation="MEESSSAVAGDQRDESTGQEVTMRERDMDQKSTSPEAEVEARGL DGSESRPLLNKSDILKAVEVVERDSLAIADSFSSLFASLRMALSEVTSGSVDHMRCFG DAAGRLQESALDAATKGNRYINSCLRLNEEMKGTDALASQLKILRRNVDALDTAVNKL LRPS" gene 32096849..32097699 /locus_tag="TCM_016260" /note="dbxref CacaoGD:Thecc1EG016260" mRNA 32096849..32097699 /locus_tag="TCM_016260" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1987t8" CDS 32097221..32097493 /locus_tag="TCM_016260" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24748.1" /translation="MNIFADHISMLPLVGKSLTNKSQFKYNWNCYLNLGITIGPCFFD NFFSFYFCWSMQHATILYLLFVHRSFHSCRLMSSAKTLVINILLQL" mobile_element 32102437..32102649 /note="source:MITE_Unknow_2_24 24 242" /mobile_element_type="transposon:TIR/MITE" mobile_element 32102630..32102807 /note="source:CACAO_Mariner_E220_scaffold_9 8741 8925" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 32102669..32102828 /note="source:CACAO_MITE63_scaffold_4 330 502" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(32103766..32104152) /note="source:scaffold_7_CACTA_0795 2855 3246" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32104282..32104667 /note="source:CACAO_on_SS_E42_scaffold_2 24149 24537" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(32106125..32106192) /note="source:CACAO_M_E57763_F96_scaffold_9 723 780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32106142..32106191 /note="source:CACAO_M_S_E144701_F231_scaffold_10 1161 1208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32106151..32106200) /note="source:scaffold_4_CACTA_0505 16315 16363" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32106159..32106202 /note="source:scaffold_8_CACTA_0860 10418 10462" /mobile_element_type="transposon:TIR/CACTA" gene 32109363..32114787 /locus_tag="TCM_016261" /note="dbxref CacaoGD:Thecc1EG016261" mRNA join(32109363..32109775,32110567..32110702, 32111153..32111407,32111499..32111595,32111708..32111722, 32112085..32112141,32112252..32113112,32113186..32113629, 32113750..32114787) /locus_tag="TCM_016261" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene32494" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005333t1" /inference="similar to AA sequence:frave:gene32494" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10666t4" mRNA join(32109723..32110702,32111153..32111407, 32111499..32111595,32111708..32111722,32112085..32112141, 32112252..32113112,32113186..32113629,32113750..32114009) /locus_tag="TCM_016261" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene32494" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005333t1" /inference="similar to AA sequence:frave:gene32494" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc296t10; alternateUTRof:Thecc1EG016261t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10666t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc469t6_C2" mRNA join(<32109723..32109775,32111153..32111407, 32111499..32111595,32111708..32111722,32112085..32112141, 32112252..32113112,32113186..32113629,32113750..32114009) /locus_tag="TCM_016261" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene32494" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005333t1" /inference="similar to AA sequence:frave:gene32494" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc296t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10666t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc469t6_C2" CDS join(<32109723..32109775,32111153..32111407, 32111499..32111595,32111708..32111722,32112085..32112141, 32112252..32113112,32113186..32113629,32113750..32113821) /locus_tag="TCM_016261" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene32494; paralog of Thecc1EG005333t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3" /protein_id="EOY24751.1" /db_xref="TAIR:AT5G41315.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWR9" /translation="VVSLLALVVGPSVFLYLGVLEWGDGYYNGDIKTRKTVQAVELNA NQLGLQRSEQLRELYESLSAGDSSPQARRPSAALSPEDLTDTEWYYLVCMSFVFNIGQ GLPGRTLASGQPIWLCNAHYAESKVFSRSLLAKSASIQTVVCFPFSGGVIELGVADMV LEDLSLIQRIKTSFLDTPHPIGSYKSIPVAGSTGNDKDLACPALEPQIPDTKLSPLLG CEQLEMASPNDSSDGFEPNQPAEDSFMVEGINGGASQVQSWQFMEEEFSNCVHHSLNS SDCISQTFVDHGNVVPLCKGENDNDNGLQDVQECNQTKLTSLDIRSDDLHYQTVLSAL LKTSHQLILGPHFRNSNQESSFMRWKRNGLVKSQKAGDETPQKLLKKILFEVPQMHDK GLLDSPEDNGIRDAAWRPEADEICGNHVLSERRRREKLNERFMILKSLVPSVSRADKV SILDDTIGYLQDLERRVEELESCRELTDLEARMKRKPQDHVERTSDNYGNNKMTNGKK PSLNKRKACDIDGAELEIDYVASKDGSTENVTVSMSNKDFLIEFRCPWREGILLEIMD ALSILNLDCHSVQSSTTEGILSLTIESKYKGSTAASAGTIKQALQRVARKC" mRNA join(32110146..32110512,32111153..32111407, 32111499..32111595,32111708..32111722,32112085..32112141, 32112252..32113112,32113186..32113629,32113750..32114427) /locus_tag="TCM_016261" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 4" /inference="alignment:exonerate-protein:2:frave:gene32494" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005333t1" /inference="similar to AA sequence:frave:gene32494" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10666t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10666t4" mRNA join(32110484..32110702,32111153..32111407, 32111499..32111595,32111708..32111722,32112085..32112141, 32112252..32113777) /locus_tag="TCM_016261" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 7" /inference="alignment:exonerate-protein:2:frave:gene32494" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005333t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09450.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc482t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10666t4; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc469t6_C2" mRNA join(32110484..32110702,32111153..32111407, 32111499..32111595,32111708..32111722,32112110..32112141, 32112252..32113112,32113186..32113777) /locus_tag="TCM_016261" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 6" /inference="alignment:exonerate-protein:2:frave:gene32494" /inference="similar to AA sequence:Phytozome:POPTR_0003s12810.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc482t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10666t4" CDS join(32110572..32110702,32111153..32111407, 32111499..32111595,32111708..32111722,32112085..32112141, 32112252..32113112,32113186..32113629,32113750..32113821) /locus_tag="TCM_016261" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene32494; paralog of Thecc1EG005333t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY24749.1" /db_xref="TAIR:AT5G41315.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWR9" /translation="MQMATGVQNQERLPENLKKQLALAVRNIQWSYAIFWSISARQPG VLEWGDGYYNGDIKTRKTVQAVELNANQLGLQRSEQLRELYESLSAGDSSPQARRPSA ALSPEDLTDTEWYYLVCMSFVFNIGQGLPGRTLASGQPIWLCNAHYAESKVFSRSLLA KSASIQTVVCFPFSGGVIELGVADMVLEDLSLIQRIKTSFLDTPHPIGSYKSIPVAGS TGNDKDLACPALEPQIPDTKLSPLLGCEQLEMASPNDSSDGFEPNQPAEDSFMVEGIN GGASQVQSWQFMEEEFSNCVHHSLNSSDCISQTFVDHGNVVPLCKGENDNDNGLQDVQ ECNQTKLTSLDIRSDDLHYQTVLSALLKTSHQLILGPHFRNSNQESSFMRWKRNGLVK SQKAGDETPQKLLKKILFEVPQMHDKGLLDSPEDNGIRDAAWRPEADEICGNHVLSER RRREKLNERFMILKSLVPSVSRADKVSILDDTIGYLQDLERRVEELESCRELTDLEAR MKRKPQDHVERTSDNYGNNKMTNGKKPSLNKRKACDIDGAELEIDYVASKDGSTENVT VSMSNKDFLIEFRCPWREGILLEIMDALSILNLDCHSVQSSTTEGILSLTIESKYKGS TAASAGTIKQALQRVARKC" CDS join(32110572..32110702,32111153..32111407, 32111499..32111595,32111708..32111722,32112085..32112141, 32112252..32113112,32113186..32113629,32113750..32113821) /locus_tag="TCM_016261" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene32494; paralog of Thecc1EG005333t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY24750.1" /db_xref="TAIR:AT5G41315.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWR9" /translation="MQMATGVQNQERLPENLKKQLALAVRNIQWSYAIFWSISARQPG VLEWGDGYYNGDIKTRKTVQAVELNANQLGLQRSEQLRELYESLSAGDSSPQARRPSA ALSPEDLTDTEWYYLVCMSFVFNIGQGLPGRTLASGQPIWLCNAHYAESKVFSRSLLA KSASIQTVVCFPFSGGVIELGVADMVLEDLSLIQRIKTSFLDTPHPIGSYKSIPVAGS TGNDKDLACPALEPQIPDTKLSPLLGCEQLEMASPNDSSDGFEPNQPAEDSFMVEGIN GGASQVQSWQFMEEEFSNCVHHSLNSSDCISQTFVDHGNVVPLCKGENDNDNGLQDVQ ECNQTKLTSLDIRSDDLHYQTVLSALLKTSHQLILGPHFRNSNQESSFMRWKRNGLVK SQKAGDETPQKLLKKILFEVPQMHDKGLLDSPEDNGIRDAAWRPEADEICGNHVLSER RRREKLNERFMILKSLVPSVSRADKVSILDDTIGYLQDLERRVEELESCRELTDLEAR MKRKPQDHVERTSDNYGNNKMTNGKKPSLNKRKACDIDGAELEIDYVASKDGSTENVT VSMSNKDFLIEFRCPWREGILLEIMDALSILNLDCHSVQSSTTEGILSLTIESKYKGS TAASAGTIKQALQRVARKC" CDS join(32110572..32110702,32111153..32111407, 32111499..32111595,32111708..32111722,32112085..32112141, 32112252..32113190) /locus_tag="TCM_016261" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG005333t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 7" /protein_id="EOY24755.1" /db_xref="Phytozome:POPTR_0001s09450.1" /db_xref="TAIR:AT5G41315.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWR9" /translation="MQMATGVQNQERLPENLKKQLALAVRNIQWSYAIFWSISARQPG VLEWGDGYYNGDIKTRKTVQAVELNANQLGLQRSEQLRELYESLSAGDSSPQARRPSA ALSPEDLTDTEWYYLVCMSFVFNIGQGLPGRTLASGQPIWLCNAHYAESKVFSRSLLA KSASIQTVVCFPFSGGVIELGVADMVLEDLSLIQRIKTSFLDTPHPIGSYKSIPVAGS TGNDKDLACPALEPQIPDTKLSPLLGCEQLEMASPNDSSDGFEPNQPAEDSFMVEGIN GGASQVQSWQFMEEEFSNCVHHSLNSSDCISQTFVDHGNVVPLCKGENDNDNGLQDVQ ECNQTKLTSLDIRSDDLHYQTVLSALLKTSHQLILGPHFRNSNQESSFMRWKRNGLVK SQKAGDETPQKLLKKILFEVPQMHDKGLLDSPEDNGIRDAAWRPEADEICGNHVLSER RRREKLNERFMILKSLVPSVSRVVKFPFSLVIPNMKITKLTGIVYAG" mRNA join(32110678..32111407,32111499..32111595, 32111708..32111722,32112085..32112141,32112252..32113112, 32113186..32113629,32113750..32114009) /locus_tag="TCM_016261" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 4" /inference="alignment:exonerate-protein:2:frave:gene32494" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005333t1" /inference="similar to AA sequence:frave:gene32494" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc296t7; alternateUTRof:Thecc1EG016261t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10666t4" CDS join(32111379..32111407,32111499..32111595, 32111708..32111722,32112085..32112141,32112252..32113112, 32113186..32113629,32113750..32113821) /locus_tag="TCM_016261" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene32494; paralog of Thecc1EG005333t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 4" /protein_id="EOY24752.1" /db_xref="TAIR:AT5G41315.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWR9" /translation="MSFVFNIGQGLPGRTLASGQPIWLCNAHYAESKVFSRSLLAKSA SIQTVVCFPFSGGVIELGVADMVLEDLSLIQRIKTSFLDTPHPIGSYKSIPVAGSTGN DKDLACPALEPQIPDTKLSPLLGCEQLEMASPNDSSDGFEPNQPAEDSFMVEGINGGA SQVQSWQFMEEEFSNCVHHSLNSSDCISQTFVDHGNVVPLCKGENDNDNGLQDVQECN QTKLTSLDIRSDDLHYQTVLSALLKTSHQLILGPHFRNSNQESSFMRWKRNGLVKSQK AGDETPQKLLKKILFEVPQMHDKGLLDSPEDNGIRDAAWRPEADEICGNHVLSERRRR EKLNERFMILKSLVPSVSRADKVSILDDTIGYLQDLERRVEELESCRELTDLEARMKR KPQDHVERTSDNYGNNKMTNGKKPSLNKRKACDIDGAELEIDYVASKDGSTENVTVSM SNKDFLIEFRCPWREGILLEIMDALSILNLDCHSVQSSTTEGILSLTIESKYKGSTAA SAGTIKQALQRVARKC" CDS join(32111379..32111407,32111499..32111595, 32111708..32111722,32112085..32112141,32112252..32113112, 32113186..32113629,32113750..32113821) /locus_tag="TCM_016261" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene32494; paralog of Thecc1EG005333t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 4" /protein_id="EOY24753.1" /db_xref="TAIR:AT5G41315.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWR9" /translation="MSFVFNIGQGLPGRTLASGQPIWLCNAHYAESKVFSRSLLAKSA SIQTVVCFPFSGGVIELGVADMVLEDLSLIQRIKTSFLDTPHPIGSYKSIPVAGSTGN DKDLACPALEPQIPDTKLSPLLGCEQLEMASPNDSSDGFEPNQPAEDSFMVEGINGGA SQVQSWQFMEEEFSNCVHHSLNSSDCISQTFVDHGNVVPLCKGENDNDNGLQDVQECN QTKLTSLDIRSDDLHYQTVLSALLKTSHQLILGPHFRNSNQESSFMRWKRNGLVKSQK AGDETPQKLLKKILFEVPQMHDKGLLDSPEDNGIRDAAWRPEADEICGNHVLSERRRR EKLNERFMILKSLVPSVSRADKVSILDDTIGYLQDLERRVEELESCRELTDLEARMKR KPQDHVERTSDNYGNNKMTNGKKPSLNKRKACDIDGAELEIDYVASKDGSTENVTVSM SNKDFLIEFRCPWREGILLEIMDALSILNLDCHSVQSSTTEGILSLTIESKYKGSTAA SAGTIKQALQRVARKC" CDS join(32112139..32112141,32112252..32113112, 32113186..32113686) /locus_tag="TCM_016261" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 6" /protein_id="EOY24754.1" /db_xref="Phytozome:POPTR_0003s12810.1" /db_xref="TAIR:AT5G41315.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWR9" /translation="MVLEDLSLIQRIKTSFLDTPHPIGSYKSIPVAGSTGNDKDLACP ALEPQIPDTKLSPLLGCEQLEMASPNDSSDGFEPNQPAEDSFMVEGINGGASQVQSWQ FMEEEFSNCVHHSLNSSDCISQTFVDHGNVVPLCKGENDNDNGLQDVQECNQTKLTSL DIRSDDLHYQTVLSALLKTSHQLILGPHFRNSNQESSFMRWKRNGLVKSQKAGDETPQ KLLKKILFEVPQMHDKGLLDSPEDNGIRDAAWRPEADEICGNHVLSERRRREKLNERF MILKSLVPSVSRADKVSILDDTIGYLQDLERRVEELESCRELTDLEARMKRKPQDHVE RTSDNYGNNKMTNGKKPSLNKRKACDIDGAELEIDYVASKDGSTENVTVSMSNKDFLI EFRCPWREGILLEIMDALSILNLDCHSVQSSTTEGILSLTIESKVRLFCMCFIRKSLG NQIR" gene complement(32115702..32121387) /locus_tag="TCM_016262" /note="dbxref CacaoGD:Thecc1EG016262" mRNA complement(join(32115702..32116651,32118056..32118120, 32118244..32118319,32118852..32119027,32119116..32119247, 32119343..32119455,32119630..32119718,32119846..32120096, 32120288..32121387)) /locus_tag="TCM_016262" /product="GMP synthase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12830.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s12830.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1t2" CDS complement(join(32116042..32116651,32118056..32118120, 32118244..32118319,32118852..32119027,32119116..32119247, 32119343..32119455,32119630..32119718,32119846..32120096, 32120288..32120833)) /locus_tag="TCM_016262" /codon_start=1 /product="GMP synthase" /protein_id="EOY24756.1" /db_xref="Phytozome:POPTR_0003s12830.1" /db_xref="TAIR:AT1G63660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2D4K4" /translation="MDPKAVKSDLVLILDFGSQYTHLITRRIRSLSIFSLCISGTSPL SSITSLNPKVVILSGGPHSVHSDDSPSFADGFVKWALSNGVFVLGICYGLQLLVQRLG GEVRVGERQEYGRMEIEVEKSCGLFGGKRVGDRQVVWMSHGDEAARLPNGFQVVARSQ QGAVAAVEDQENRFYGLQYHPEVTHSPEGMETLRNFLFDVCGVNADWKMEDVMDEEIK VINNTVGPDDHVICALSGGVDSTVAAMLVHRAIGDRLHCVFVDNGLLRYKERERVMET FDRDLHLPVTCVDATNQFLRTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEV RQLGRILRVPELFLKRHPFPGPGLAVRILGDVTEGNALDILRQVDEIFIQSIKDAGIY DSIWQAFAVFLPVKSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHEFLDDVARK ICNNVRGVNRVLQMTRKKMSLAGFLNMSTGCLSEILQQYGNNMMNLSKRIAEIILRSL GDGYEEKFYESEFGDCHGYLRIVNYTPPDDVEEREVEGLGMHTDMSCITIVYQDELGG LQMRSKEGKWMDVRPCENSLVVNIGDLMQAWSNGRLRSSEHRVVLKQFMNRFSLAFFW CFGDEKVILAPDAVVGVGNSRVYHPFVCLDYLKFRESNEVGNFDKIGYTVKDFAGLKV EVQ" gene complement(32121411..32133426) /locus_tag="TCM_016263" /note="dbxref CacaoGD:Thecc1EG016263" mRNA complement(join(32121411..32122419,32122577..32122595, 32133310..32133426)) /locus_tag="TCM_016263" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028932001" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage" CDS complement(32122002..32122418) /locus_tag="TCM_016263" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24757.1" /translation="MGNGGSSSTAKLLGTGQKNCSLICMVVPILLHGEDRFTAQQMSL VLQWGVAIYQNMAMMGNLPTSSRCKYGTMEILFIQMATLLRFILIDLSATMHRLLTKM VLPIQWIFSMGAPATVNLYVNNEVIRNHAFIQREKV" mobile_element complement(32122648..32123235) /note="source:INTACT52F_F339_scaffold_1-int 1684 2272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32131597..32132957 /note="source:INTACT60_F127_scaffold_9-int 9304 12939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32132958..32133524) /note="source:CACAO_on_E459_scaffold_2 138 749" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(32133475..32134938) /locus_tag="TCM_016266" /note="dbxref CacaoGD:Thecc1EG016266" mRNA complement(join(32133475..32133570,32133644..32133697, 32133849..32134004,32134141..32134371,32134487..32134573, 32134676..32134938)) /locus_tag="TCM_016266" /product="Uncharacterized protein" /inference="similar to AA sequence:TAIR:AT4G23380.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5464t1" CDS complement(join(32133520..32133570,32133644..32133697, 32133849..32134004,32134141..32134371,32134487..32134573, 32134676..32134870)) /locus_tag="TCM_016266" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24758.1" /db_xref="TAIR:AT4G23380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JNI7" /translation="MEAEYMVIPAGYSRNFMLLLLVQIMIALLLGADAVQEWKTLSEE ENLEMERQLKVINKPPIKSFLTEYGDILDCIDIYKQHAFDHPLLKDHKVQMRPTRIPK DQMMGGKSSMKTKPPRFLPENIRCPPGSVLIKRTTKEDLIMAKKIKALGLNYPTTSRF HSNDAAPNGYVSANAEYTKHNFGAKTTMNVWNPSVSPNQLSLASMWIANGPVDTLNVI QFGWGVQPRLYSSNYTRLFSYWTVDGYKKTGCYDYLCPL" gene complement(32136000..32141852) /locus_tag="TCM_016267" /note="dbxref CacaoGD:Thecc1EG016267" mRNA complement(join(32136000..32137149,32137251..32137440, 32137651..32137820,32137906..32139493,32139650..32139714, 32139900..32140169,32140786..32141089,32141264..32141852)) /locus_tag="TCM_016267" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011225" /inference="similar to AA sequence:Phytozome:POPTR_0001s09470.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10644t2" CDS complement(join(32136563..32137149,32137251..32137440, 32137651..32137820,32137906..32139493,32139650..32139714, 32139900..32140086)) /locus_tag="TCM_016267" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24759.1" /db_xref="Phytozome:POPTR_0001s09470.1" /db_xref="TAIR:AT1G63670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCC7" /translation="MDRRLPRSPSLKSPVLSPKSPAIYEKYKSGCALGLIHFFDFRQG HSHGKLISDKKRVNRQDKGDGYTRNRSDFLTNEEKDQCRDDALDSKNLGVNSRKPEVK RIIKEETPVKLQVKKNTAIAEMQNLQFNPKLVGHSKDHRKASKNSKKSSRFPARGCKD RATEGCRQPSNQNMVDKFNNNSASLTEASGDDEDTNNGGTYSCKSNVGGKHYRHTEIN LRVHMNEAVEAFVNQKLTDGENLDRNELANRSKNFIDALEILNSNKELFTKLLQDPNS LLVKHIQGLRDSQAKNQQHQSSSKAKTSHCQPKEAGECEPSNTIVVLKPGMQNCPDRI SNWPSPQSHYSLRKKERSARPAFLSFEHMKRKLRHAMRVNKKEQCQMSLDGIHKSQRD FEQFDEGGKEMSRQANEKISTGKSYLDVRKMSESSPEVNRRDGMGQTENFGSGPSGIG GKAASSTESCNGTSNLLTIRHLKGKFHSTKHLSEILNSGNEDLSRKQTLRTMDRLMSL PEYDLLPLLTPGRNKEHRFASPQMRFSPYNNFPTANGYKWRVQNEKKSSCLSSSPIKN LGADPMSDNEKPDDRLQGEKKSIPGNLSPATKVLPTVYSPSEDLSHKVNQTSVCPGNI MERNHADRWGESNALEPNGVQNTNTNPRTEAVNTFGDSELLECLKLDSPLGDQTSSSS VDVYSSSPFHIQRAEDSDSMTDRAEQPSPISVLEQFFVEDNTSSPSTISLAAEPPVGP FCIEELYASLLVESHLDLKSNAGTSTDKQGSLSEYIKAVLQKSGLNWGELSRKCHLSD QMLNSSLFDSVEVWPDKSCADRRLIFGYISEVLLEIYQCYFRCSPWVSLVNPRPRPVL LSKNVVHEVLRHVDWLLFSELPQQTLQQLVEKDLAKSRVWMDTGIDTEEVVTELVDRI LEDLVVDIGDWLQT" gene 32141947..32151613 /locus_tag="TCM_016268" /note="dbxref CacaoGD:Thecc1EG016268" mRNA join(32141947..32141971,32145913..32148259, 32148395..32148511,32148606..32148781,32149296..32149441, 32149690..32149900,32150179..32150245,32151079..32151459) /locus_tag="TCM_016268" /product="Acid-amino acid ligases,ligases,ATP binding,ATP binding,ligases isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011226" /inference="similar to AA sequence:frave:gene32500" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10634t1" mobile_element complement(32144235..32144916) /note="source:scaffold_5_CACTA_0615 1576 2253" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32144929..32146163 /note="source:scaffold_5_CACTA_0615 997 2254" /mobile_element_type="transposon:TIR/CACTA" CDS join(32146396..32148259,32148395..32148511, 32148606..32148781,32149296..32149441,32149690..32149708) /locus_tag="TCM_016268" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene32500" /codon_start=1 /product="Acid-amino acid ligases,ligases,ATP binding,ATP binding,ligases isoform 1" /protein_id="EOY24760.1" /db_xref="TAIR:AT1G63680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKG9" /translation="MAFRLLSLPTFLSPQRNYVSLKTHHHHRHRHFPFKPLRLPAIGP DGKYYPSPDDDDPPEAPEDSMHGVDKFQQIHRQAARARKLQEEDFNKHKSNYLSAIAD VDEDVLNKEKTGNDDGDDLFGEIDKAIAMKRQELVEQGLLQPAPKKEEAFDDELGPDE VVDLEEIDKLQALNVVSDLDDGENEDSDEEDSSKFDVRISDSEGKKGEKDKVNLLDSS FDLDLDSFGKSKVRIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSA GDLFVCCVGRRTDGHLYLSEADKRGAVAVVASKEIDIEDTLGCKALVIVEDTNSVLPV LAASFYRYPSKNMVVIGITGTNGKTTTSYLIKGMYEAMGLRTGMLSSVVYYIHGDNKL ESQNTTPDAVLVQNLMAKMLHNGTEAVVMEASSHGLALGRCNEVDFDIAVFTNLTRDH LDFHGTEEEYRDAKAKLFARMVDPERHRKVVNIDDAQAPFFIAQGSPKVPVVTFAMEN KNADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLE DIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPKRIITVIG CPGESDRGKRPMMAKISTDKSEVTILTSDNPKSEDPLDILDDMLAGVGWTMQEYLKYG ENDYYPPLPNGHRLFLHDIRQVAVRCAVAMGEEGDMVVIAGKGHETYQIEGDKKEFFD DREECREALQYVDELHQAGIDTSEFPWRLPESH" mRNA join(32146619..32148259,32148395..32148511, 32148606..32148781,32149296..32149441,32149690..32149900, 32150179..32150245,32151051..32151613) /locus_tag="TCM_016268" /product="Acid-amino acid ligases,ligases,ATP binding,ATP binding,ligases isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011226" /inference="similar to AA sequence:Phytozome:POPTR_0001s09480.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1375t1; alternateUTRof:Thecc1EG016268t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10634t1" mRNA join(32146642..32148259,32148395..32148511, 32148606..32148781,32149296..32149441,32149690..32149900, 32150179..32150944,32151051..32151080) /locus_tag="TCM_016268" /product="Acid-amino acid ligases,ligases,ATP binding,ATP binding,ligases isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011226" /inference="similar to AA sequence:Phytozome:POPTR_0001s09480.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1375t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10634t1" mRNA join(32146642..32148259,32148395..32148511, 32148606..32148781,32149296..32149441,32149690..32149900, 32149986..32149994,32150033..32150207) /locus_tag="TCM_016268" /product="Acid-amino acid ligases,ligases,ATP binding,ATP binding,ligases isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011226" /inference="similar to AA sequence:Phytozome:POPTR_0001s09480.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1375t2_C1; alternateUTRof:Thecc1EG016268t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10634t1" CDS join(32146786..32148259,32148395..32148511, 32148606..32148781,32149296..32149441,32149690..32149708) /locus_tag="TCM_016268" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Acid-amino acid ligases,ligases,ATP binding,ATP binding,ligases isoform 2" /protein_id="EOY24761.1" /db_xref="Phytozome:POPTR_0001s09480.1" /db_xref="TAIR:AT1G63680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKG9" /translation="MKRQELVEQGLLQPAPKKEEAFDDELGPDEVVDLEEIDKLQALN VVSDLDDGENEDSDEEDSSKFDVRISDSEGKKGEKDKVNLLDSSFDLDLDSFGKSKVR IVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRRTDG HLYLSEADKRGAVAVVASKEIDIEDTLGCKALVIVEDTNSVLPVLAASFYRYPSKNMV VIGITGTNGKTTTSYLIKGMYEAMGLRTGMLSSVVYYIHGDNKLESQNTTPDAVLVQN LMAKMLHNGTEAVVMEASSHGLALGRCNEVDFDIAVFTNLTRDHLDFHGTEEEYRDAK AKLFARMVDPERHRKVVNIDDAQAPFFIAQGSPKVPVVTFAMENKNADVHPLKFELSL FETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPG RCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPKRIITVIGCPGESDRGKRPMMA KISTDKSEVTILTSDNPKSEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRL FLHDIRQVAVRCAVAMGEEGDMVVIAGKGHETYQIEGDKKEFFDDREECREALQYVDE LHQAGIDTSEFPWRLPESH" CDS join(32146786..32148259,32148395..32148511, 32148606..32148781,32149296..32149441,32149690..32149708) /locus_tag="TCM_016268" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Acid-amino acid ligases,ligases,ATP binding,ATP binding,ligases isoform 2" /protein_id="EOY24762.1" /db_xref="Phytozome:POPTR_0001s09480.1" /db_xref="TAIR:AT1G63680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKG9" /translation="MKRQELVEQGLLQPAPKKEEAFDDELGPDEVVDLEEIDKLQALN VVSDLDDGENEDSDEEDSSKFDVRISDSEGKKGEKDKVNLLDSSFDLDLDSFGKSKVR IVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRRTDG HLYLSEADKRGAVAVVASKEIDIEDTLGCKALVIVEDTNSVLPVLAASFYRYPSKNMV VIGITGTNGKTTTSYLIKGMYEAMGLRTGMLSSVVYYIHGDNKLESQNTTPDAVLVQN LMAKMLHNGTEAVVMEASSHGLALGRCNEVDFDIAVFTNLTRDHLDFHGTEEEYRDAK AKLFARMVDPERHRKVVNIDDAQAPFFIAQGSPKVPVVTFAMENKNADVHPLKFELSL FETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPG RCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPKRIITVIGCPGESDRGKRPMMA KISTDKSEVTILTSDNPKSEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRL FLHDIRQVAVRCAVAMGEEGDMVVIAGKGHETYQIEGDKKEFFDDREECREALQYVDE LHQAGIDTSEFPWRLPESH" CDS join(32146786..32148259,32148395..32148511, 32148606..32148781,32149296..32149441,32149690..32149708) /locus_tag="TCM_016268" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Acid-amino acid ligases,ligases,ATP binding,ATP binding,ligases isoform 2" /protein_id="EOY24763.1" /db_xref="Phytozome:POPTR_0001s09480.1" /db_xref="TAIR:AT1G63680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKG9" /translation="MKRQELVEQGLLQPAPKKEEAFDDELGPDEVVDLEEIDKLQALN VVSDLDDGENEDSDEEDSSKFDVRISDSEGKKGEKDKVNLLDSSFDLDLDSFGKSKVR IVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRRTDG HLYLSEADKRGAVAVVASKEIDIEDTLGCKALVIVEDTNSVLPVLAASFYRYPSKNMV VIGITGTNGKTTTSYLIKGMYEAMGLRTGMLSSVVYYIHGDNKLESQNTTPDAVLVQN LMAKMLHNGTEAVVMEASSHGLALGRCNEVDFDIAVFTNLTRDHLDFHGTEEEYRDAK AKLFARMVDPERHRKVVNIDDAQAPFFIAQGSPKVPVVTFAMENKNADVHPLKFELSL FETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPG RCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPKRIITVIGCPGESDRGKRPMMA KISTDKSEVTILTSDNPKSEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRL FLHDIRQVAVRCAVAMGEEGDMVVIAGKGHETYQIEGDKKEFFDDREECREALQYVDE LHQAGIDTSEFPWRLPESH" mobile_element complement(32151115..32151166) /note="source:INTACT254_F60_scaffold_3-int 6152 6197" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 32152268..32155836 /locus_tag="TCM_016269" /note="dbxref CacaoGD:Thecc1EG016269" mRNA join(32152268..32152618,32153455..32154589, 32154698..32155836) /locus_tag="TCM_016269" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09490.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09490.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10642t1" CDS join(32153690..32154589,32154698..32155492) /locus_tag="TCM_016269" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24764.1" /db_xref="Phytozome:POPTR_0001s09490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKG8" /translation="MVLSFCKGQVQVMAPEEMGELEFQRRWEYRRRDNDFDSSCDDSK SSSEPLRRRHKLVSSLISVGDHRTSGLKQKDNDNPGTGDQINVGKAKTRKARNISNNL QNSKRKRGSPKEFDLQKGDTRAHDPVPLDDVKNFMESLLEDLKVTRENLLKWLMEEMQ KLVADDTTPEPKRRKRGHRGKKVQLQPTKKSKKVQDQHEKTAKESMQVQHPNNFEESI QVQHHNNFQETVLAQQQNNFQVNVMQLQEEENINWQHQNDFKYGMRSQNCNNRSLVRL PKSSNAADSTDCFNALGDGVDSGQSHKSVVLAIEAQKRKGGSLERSLKSKKTVDCSSH YQVPEDQGGHGQAMRTAVATEKTNGEMLGSSVVQNFLSSPSGQAPSSMYLTLPTVLTE PIVAPIVANHGLDASLCDYILPRVAEKKRGVNSERMNQILEASCTQGSFPVVHPEERI QSFAPMGSRNTGCVNQNSTPTSGIGNGYPVPLHQGIDVGLSIPRQAHAGYLSQDNDKT LALRMNGGAIRFPGGTYNLSEHPAANNCHFHSTYQSDSGLTLCQLQNIKDGHLFPK" gene 32157702..32163881 /locus_tag="TCM_016270" /note="dbxref CacaoGD:Thecc1EG016270" mRNA join(32157702..32157840,32158019..32158279, 32158974..32159132,32159236..32159347,32159608..32159727, 32159812..32159963,32160077..32160122,32160249..32160259, 32160454..32160488,32160895..32161051,32161725..32161778, 32161964..32162056,32162192..32162334,32162925..32162995, 32163199..32163282,32163435..32163627) /locus_tag="TCM_016270" /product="Signal peptide peptidase-like 2 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30190.m011228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005321t1" /inference="similar to AA sequence:ricco:30190.m011228" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc291t12; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc291t8; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc281t22" mRNA join(32157702..32158279,32158974..32159132, 32159236..32159347,32159608..32159727,32159812..32159963, 32160077..32160259,32160454..32160488,32160895..32161051, 32161725..32161778,32161964..32162056,32162192..32162334, 32162925..32163281) /locus_tag="TCM_016270" /product="Signal peptide peptidase-like 2 isoform 4" /inference="alignment:exonerate- protein:2:ricco:30190.m011228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005321t1" /inference="similar to AA sequence:ricco:30190.m011228" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc291t10; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc291t8; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc281t22" mRNA join(32157715..32158279,32158974..32159132, 32159236..32159347,32159608..32159727,32159812..32159963, 32160077..32160259,32160454..32160488,32160895..32161051, 32161725..32161778,32161964..32162056,32162192..32162334, 32162925..32162995,32163199..32163282,32163435..32163881) /locus_tag="TCM_016270" /product="Signal peptide peptidase-like 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005321t1" /inference="similar to AA sequence:ricco:30190.m011228" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc291t8" mRNA join(32157792..32157912,32158019..32158279, 32158974..32159132,32159236..32159347,32159608..32159727, 32159812..32159963,32160077..32160259,32160454..32160488, 32160895..32161051,32161725..32161778,32161964..32162056, 32162192..32162334,32162925..32162995,32163199..32163282, 32163435..32163786) /locus_tag="TCM_016270" /product="Signal peptide peptidase-like 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005321t1" /inference="similar to AA sequence:ricco:30190.m011228" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01231t00002; alternateUTRof:Thecc1EG016270t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc291t8; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc281t22" CDS join(32158133..32158279,32158974..32159132, 32159236..32159347,32159608..32159727,32159812..32159963, 32160077..32160259,32160454..32160488,32160895..32161051, 32161725..32161778,32161964..32162056,32162192..32162334, 32162925..32162995,32163199..32163282,32163435..32163565) /locus_tag="TCM_016270" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011228; paralog of Thecc1EG005321t1" /codon_start=1 /product="Signal peptide peptidase-like 2 isoform 1" /protein_id="EOY24765.1" /db_xref="TAIR:AT1G63690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LCK4" /translation="MDLRSLCRVIFVTALISLVCQPCSVTAGDIVHDDDSAPKKPGCE NDFVLVKVQTWVNGIEDAEFVGVGARFGTTIVSKEKNANQRRLILSDPRDCCSPPKNK LANDVIMVDRGNCKFTTKANNAEAAHASAVLIINNQKELYKMVCEPDETDLDIQIPAV MLPQDAGASLEKMLTSNASVLVQLYSPKRPLVDIAEVFLWLMAVGTILCASYWSAWNA REAAIEQDKLLKDALDEIPDTSHVASGGIVDINTTSAVLFVVVASCFLVMLYKLMSYW FVEILVVLFCIGGVEGLQTCLVALLSRWFKHAGESYIKVPFFGALSYLTLAVSPFCIA FAVVWAVYRNVSFAWIGQDILGIALIITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFV SKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLLIAFS LRYDWLANKTLRAGYFLWAMFAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLT LGRKRGDLRVLWTRGEPERPCPHIQLEHLHSEELSEEK" CDS join(32158133..32158279,32158974..32159132, 32159236..32159347,32159608..32159727,32159812..32159963, 32160077..32160259,32160454..32160488,32160895..32161051, 32161725..32161778,32161964..32162056,32162192..32162334, 32162925..32162995,32163199..32163282,32163435..32163565) /locus_tag="TCM_016270" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011228; paralog of Thecc1EG005321t1" /codon_start=1 /product="Signal peptide peptidase-like 2 isoform 1" /protein_id="EOY24766.1" /db_xref="TAIR:AT1G63690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LCK4" /translation="MDLRSLCRVIFVTALISLVCQPCSVTAGDIVHDDDSAPKKPGCE NDFVLVKVQTWVNGIEDAEFVGVGARFGTTIVSKEKNANQRRLILSDPRDCCSPPKNK LANDVIMVDRGNCKFTTKANNAEAAHASAVLIINNQKELYKMVCEPDETDLDIQIPAV MLPQDAGASLEKMLTSNASVLVQLYSPKRPLVDIAEVFLWLMAVGTILCASYWSAWNA REAAIEQDKLLKDALDEIPDTSHVASGGIVDINTTSAVLFVVVASCFLVMLYKLMSYW FVEILVVLFCIGGVEGLQTCLVALLSRWFKHAGESYIKVPFFGALSYLTLAVSPFCIA FAVVWAVYRNVSFAWIGQDILGIALIITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFV SKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLLIAFS LRYDWLANKTLRAGYFLWAMFAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLT LGRKRGDLRVLWTRGEPERPCPHIQLEHLHSEELSEEK" CDS join(32158133..32158279,32158974..32159132, 32159236..32159347,32159608..32159727,32159812..32159963, 32160077..32160122,32160249..32160259,32160454..32160488, 32160895..32161051,32161725..32161778,32161964..32162056, 32162192..32162334,32162925..32162995,32163199..32163282, 32163435..32163565) /locus_tag="TCM_016270" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m011228; paralog of Thecc1EG005321t1" /codon_start=1 /product="Signal peptide peptidase-like 2 isoform 3" /protein_id="EOY24767.1" /db_xref="TAIR:AT1G63690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LCK4" /translation="MDLRSLCRVIFVTALISLVCQPCSVTAGDIVHDDDSAPKKPGCE NDFVLVKVQTWVNGIEDAEFVGVGARFGTTIVSKEKNANQRRLILSDPRDCCSPPKNK LANDVIMVDRGNCKFTTKANNAEAAHASAVLIINNQKELYKMVCEPDETDLDIQIPAV MLPQDAGASLEKMLTSNASVLVQLYSPKRPLVDIAEVFLWLMAVGTILCASYWSAWNA REAAIEQDKLLKDALDEIPDTSHVASGGGVEGLQTCLVALLSRWFKHAGESYIKVPFF GALSYLTLAVSPFCIAFAVVWAVYRNVSFAWIGQDILGIALIITVLQIVHVPNLKVGT VLLSCAFLYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSI IGFGDILLPGLLIAFSLRYDWLANKTLRAGYFLWAMFAYGLGLLITYVALNLMDGHGQ PALLYIVPFTLGTFLTLGRKRGDLRVLWTRGEPERPCPHIQLEHLHSEELSEEK" CDS join(32158133..32158279,32158974..32159132, 32159236..32159347,32159608..32159727,32159812..32159963, 32160077..32160259,32160454..32160488,32160895..32161051, 32161725..32161778,32161964..32162056,32162192..32162334, 32162925..32163009) /locus_tag="TCM_016270" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30190.m011228; paralog of Thecc1EG005321t1" /codon_start=1 /product="Signal peptide peptidase-like 2 isoform 4" /protein_id="EOY24768.1" /db_xref="TAIR:AT1G63690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LCK4" /translation="MDLRSLCRVIFVTALISLVCQPCSVTAGDIVHDDDSAPKKPGCE NDFVLVKVQTWVNGIEDAEFVGVGARFGTTIVSKEKNANQRRLILSDPRDCCSPPKNK LANDVIMVDRGNCKFTTKANNAEAAHASAVLIINNQKELYKMVCEPDETDLDIQIPAV MLPQDAGASLEKMLTSNASVLVQLYSPKRPLVDIAEVFLWLMAVGTILCASYWSAWNA REAAIEQDKLLKDALDEIPDTSHVASGGIVDINTTSAVLFVVVASCFLVMLYKLMSYW FVEILVVLFCIGGVEGLQTCLVALLSRWFKHAGESYIKVPFFGALSYLTLAVSPFCIA FAVVWAVYRNVSFAWIGQDILGIALIITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFV SKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLLIAFS LRYDWLANKTLRAGYFLWAMFAYGLGKRW" gene 32166552..32169654 /locus_tag="TCM_016272" /note="dbxref CacaoGD:Thecc1EG016272" mRNA join(32166552..32166970,32167202..32167500, 32168776..32168916,32169056..32169654) /locus_tag="TCM_016272" /product="Plasma membrane intrinsic protein 1,4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005318t1" /inference="similar to AA sequence:ricco:30190.m011229" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10482t1" mRNA join(32166553..32166970,32167202..32167500, 32168776..32168916,32169056..32169502) /locus_tag="TCM_016272" /product="Plasma membrane intrinsic protein 1,4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023078001" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005318t1" /inference="similar to AA sequence:ricco:30190.m011229" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07974t00001; alternateUTRof:Thecc1EG016272t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10482t1" mRNA join(<32166636..32166970,32167202..32167500, 32168776..32168916,32169056..32169139,32169384..>32169394) /locus_tag="TCM_016272" /product="Plasma membrane intrinsic protein 1,4 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023078001" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005318t1" /inference="similar to AA sequence:ricco:30190.m011229" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10952t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10482t1" CDS join(<32166637..32166970,32167202..32167500, 32168776..32168916,32169056..32169139,32169384..>32169392) /locus_tag="TCM_016272" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m011229; paralog of Thecc1EG005318t1" /codon_start=1 /product="Plasma membrane intrinsic protein 1,4 isoform 3" /protein_id="EOY24771.1" /db_xref="TAIR:AT4G00430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43286" /translation="RKMEGKEEDVKLGANKFPERQPIGTSAQTDKDYKEPPPAPLFEP GELKSWSFYRAGIAEFVATFLFLYITILTVMGVSQSKTKCSTVGIQGIAWAFGGMIFA LVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYIIMQCLGAICGAGVVKGFQGDSR YEMLRGGANVVNHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPI GFAVFLVHLATIPITGTGINPARSLGAAVIYNKDHAWDDHWIFWVGPFIGAALAAIYH QIIIRAIPFKSRS" CDS join(32166643..32166970,32167202..32167500, 32168776..32168916,32169056..32169151) /locus_tag="TCM_016272" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011229; paralog of Thecc1EG005318t1" /codon_start=1 /product="Plasma membrane intrinsic protein 1,4 isoform 1" /protein_id="EOY24769.1" /db_xref="TAIR:AT4G00430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43286" /translation="MEGKEEDVKLGANKFPERQPIGTSAQTDKDYKEPPPAPLFEPGE LKSWSFYRAGIAEFVATFLFLYITILTVMGVSQSKTKCSTVGIQGIAWAFGGMIFALV YCTAGISGGHINPAVTFGLLLARKLSLTRAVFYIIMQCLGAICGAGVVKGFQGDSRYE MLRGGANVVNHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGF AVFLVHLATIPITGTGINPARSLGAAVIYNKDHAWDDHWIFWVGPFIGAALAAIYHQI IIRAIPFKARA" CDS join(32166643..32166970,32167202..32167500, 32168776..32168916,32169056..32169151) /locus_tag="TCM_016272" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011229; paralog of Thecc1EG005318t1" /codon_start=1 /product="Plasma membrane intrinsic protein 1,4 isoform 1" /protein_id="EOY24770.1" /db_xref="TAIR:AT4G00430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43286" /translation="MEGKEEDVKLGANKFPERQPIGTSAQTDKDYKEPPPAPLFEPGE LKSWSFYRAGIAEFVATFLFLYITILTVMGVSQSKTKCSTVGIQGIAWAFGGMIFALV YCTAGISGGHINPAVTFGLLLARKLSLTRAVFYIIMQCLGAICGAGVVKGFQGDSRYE MLRGGANVVNHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGF AVFLVHLATIPITGTGINPARSLGAAVIYNKDHAWDDHWIFWVGPFIGAALAAIYHQI IIRAIPFKARA" gene complement(32169122..32172232) /locus_tag="TCM_016273" /note="dbxref CacaoGD:Thecc1EG016273" mRNA complement(join(32169122..32169694,32172090..32172232)) /locus_tag="TCM_016273" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.30 coverage" gene 32169387..32175775 /locus_tag="TCM_016274" /note="dbxref CacaoGD:Thecc1EG016274" mRNA join(32169387..32169410,32171914..32172472, 32173089..32173320,32173571..32173650,32173789..32173942, 32174081..32174159,32174503..32174587,32174810..32174853, 32175057..32175089,32175188..32175775) /locus_tag="TCM_016274" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G11410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015204t1" /inference="similar to AA sequence:ricco:30190.m011230" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03165t00001" CDS complement(join(32169481..32169694,32172090..32172121)) /locus_tag="TCM_016273" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24772.1" /translation="MILIFLLQMPRRYEAKVSGKAEFGFPACNILASYDFPSASLSLD LAGKGVTRGGLLTSATTEALSYHVLHLENCQWGRRRW" gene 32169702..32171065 /locus_tag="TCM_016275" /note="dbxref CacaoGD:Thecc1EG016275" mRNA 32169702..32171065 /locus_tag="TCM_016275" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc785t1" CDS 32169860..32170096 /locus_tag="TCM_016275" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24776.1" /translation="MIGKYTFFLKTTVLAGSTPHSLAAYRLGLPLAAESWCRHKHNQS AQSKLQGLWAMAYWTLGWALPIPSCCLRKPSDCV" mobile_element complement(32170906..32171983) /note="source:CACAO_on_E683_scaffold_9 1225 2307" /mobile_element_type="transposon:TIR/PIF-Harbinger" mRNA join(32172229..32172472,32173089..32173320, 32173571..32173650,32173789..32173942,32174081..32174159, 32174503..32174596,32174942..32174989,32175188..32175758) /locus_tag="TCM_016274" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT4G11410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015204t1" /inference="similar to AA sequence:ricco:30190.m011230" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02650t00001; inference alignment:Newbler:10:TSA:cgbaL_g09590t00001; inference alignment:Newbler:10:TSA:cgbaB_g03165t00001" mRNA join(32172229..32172472,32173089..32173320, 32173571..32173650,32173789..32173942,32174081..32174159, 32174503..32174587,32174927..32174935,32175156..32175625) /locus_tag="TCM_016274" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT4G11410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015204t1" /inference="similar to AA sequence:ricco:30190.m011230" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03165t00001; inference alignment:Newbler:10:TSA:cgbaB_g03165t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10836t2" CDS join(32172367..32172472,32173089..32173320, 32173571..32173650,32173789..32173942,32174081..32174159, 32174503..32174587,32174810..32174853,32175057..32175089, 32175188..32175352) /locus_tag="TCM_016274" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011230; paralog of Thecc1EG015204t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /protein_id="EOY24773.1" /db_xref="TAIR:AT4G11410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6K5" /translation="MWIFGWKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGVE TTRVLALRGVHVVMAVRNVDAGRNVKEAILKELPGATIDVMELDLSSLASVRKFASEY QSSSLPLNLLINNAGVMATPFMLSHENIELQFATNHLGHFLLTNLLLETMKNTARESS REGRIVNLSSEGHRIVYREGIRFDKINDESGYFSWLAYGQSKLSNILHAKELARRLKE EGVEITANSVHPGAIMTNLMRHHGFINTISHTMQNEIGKYNLIIIECLANIPQGAATT CYVALHPQVKGVSGEYFMDSNIGNPSSKAKDADLAKRLWDFSLTLTNTK" CDS join(32172367..32172472,32173089..32173320, 32173571..32173650,32173789..32173942,32174081..32174159, 32174503..32174596,32174942..32174973) /locus_tag="TCM_016274" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m011230; paralog of Thecc1EG015204t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 3" /protein_id="EOY24775.1" /db_xref="TAIR:AT4G11410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6K5" /translation="MWIFGWKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGVE TTRVLALRGVHVVMAVRNVDAGRNVKEAILKELPGATIDVMELDLSSLASVRKFASEY QSSSLPLNLLINNAGVMATPFMLSHENIELQFATNHLGHFLLTNLLLETMKNTARESS REGRIVNLSSEGHRIVYREGIRFDKINDESGYFSWLAYGQSKLSNILHAKELARRLKE EGVEITANSVHPGAIMTNLMRHHGFINSNPYASFTILSKP" CDS join(32172367..32172472,32173089..32173320, 32173571..32173650,32173789..32173942,32174081..32174159, 32174503..32174587,32174927..32174934) /locus_tag="TCM_016274" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011230; paralog of Thecc1EG015204t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /protein_id="EOY24774.1" /db_xref="TAIR:AT4G11410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6K5" /translation="MWIFGWKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGVE TTRVLALRGVHVVMAVRNVDAGRNVKEAILKELPGATIDVMELDLSSLASVRKFASEY QSSSLPLNLLINNAGVMATPFMLSHENIELQFATNHLGHFLLTNLLLETMKNTARESS REGRIVNLSSEGHRIVYREGIRFDKINDESGYFSWLAYGQSKLSNILHAKELARRLKE EGVEITANSVHPGAIMTNLMRHHGFINIQ" mobile_element complement(32174962..32175073) /note="source:INTACT7879F_F100_scaffold_210-int 1691 1801" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 32174998..32175077 /note="source:scaffold_4_CACTA_0492 17066 17145" /mobile_element_type="transposon:TIR/CACTA" gene complement(32175870..32183808) /locus_tag="TCM_016276" /note="dbxref CacaoGD:Thecc1EG016276" mRNA complement(join(32175870..32176478,32176574..32176666, 32176770..32176810,32176921..32176993,32177086..32177548, 32178302..32178393,32178523..32178762,32178978..32179085, 32179172..32179231,32179474..32179549,32179660..32179820, 32179992..32180054,32180224..32180311,32180666..32181394, 32181502..32182283,32183223..32183808)) /locus_tag="TCM_016276" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019739001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015207t2" /inference="similar to AA sequence:Phytozome:GSVIVT01019739001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc578t25" CDS complement(join(32176344..32176478,32176574..32176666, 32176770..32176810,32176921..32176993,32177086..32177548, 32178302..32178393,32178523..32178762,32178978..32179085, 32179172..32179231,32179474..32179549,32179660..32179820, 32179992..32180054,32180224..32180311,32180666..32181394, 32181502..32182058)) /locus_tag="TCM_016276" /note="paralog of Thecc1EG015207t2" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY24777.1" /db_xref="Phytozome:GSVIVT01019739001" /db_xref="TAIR:AT1G63700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6UY78" /translation="MPTWWGRSSSKEDKRKASKESFIDAINRKLKITSDDRSTSRSGG SRGRRTDTVSERGSLSQVPSRSPSPSTQVSRCQSFAERPPAQPLPLPGVHYASVVRTN SGINASTRPGFDRGSRPSLFLPLPKPGQVSNKLDPVDAEGDLATASVSTDSSIDSNDP SESRLLSPLTSDYENGQRTAANSPSGIKLTDQLPDINQKNSKEILKPANISFNNQYLS TSPKRGPLSNHVQNLQIPQRGAFCSAPDSSMSSPSRSPMRAFGLEQLWNAGPCTGKPF SDIAFLGSGHCSSPGSGHNSGHNSVGGDMSGQLFWPQSRCSPECSPMPSPRMTSPGPS SRIHSGAVTPLHPRATGAATESPTSRPDDGKQLSHRLPLPPITIPFSSAYSAATSPSL PRSPGRPENPTSPGSCWKKGRLLGRGTFGHVYQGFNSESGEMCAMKEVTLFSDDAKSK ESAQQLGQEIMLLSRLRHPNIVQYYGSETVGDKLYIYLEYVSGGSIYKLLQEYGQFGE SAIRNYTQQILSGLAYLHAKNTVHRDIKGANILVDPYGRVKLADFGMAKHITGSSCPL SFKGSPYWMAPEVFKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNS KELPAIPDSLSEEGKDFVRQCLQRNPINRPTAARLLEHPFIKNAAPLERPIFSADTSD PSPAVTNAMRTLGIGNTRNLSCIDSEGTASLPCRGLKVGSGSSDAHTPRNVSCPVSPI GSPLLHPRSPQHMSGRMSPSPISSPHTVSGSSTPLSGGSGAIPFHHPKLPITYLHDGT GIIPRSQNSYYGNASNPYQEPKPDLFRGISQASNVFQEMISSDTGAFGKQYGRPGHGD HRELYDGQPVLADHVSQQLLRDHGGRPGILDALGCSSLVSVIDIKVTGSNDQHASGCW RLDYSAQCEDRNSKPSSPLEIELKQFPAMNVSASVEGQWWGLKKFCTEGGESKPNLGL SRWLAKFAETGSGKIFFHQL" mobile_element 32183911..32184347 /note="source:scaffold_1_CACTA_0008 14001 14421" /mobile_element_type="transposon:TIR/CACTA" gene complement(32184784..32185461) /locus_tag="TCM_016277" /note="dbxref CacaoGD:Thecc1EG016277" mRNA complement(join(32184784..32185206,32185308..32185461)) /locus_tag="TCM_016277" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1350t1" CDS complement(join(32185017..32185206,32185308..32185348)) /locus_tag="TCM_016277" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24778.1" /translation="MEESKMILLVIFSRTQNQGIGGFHLVTMIKLGTGHHPYLAVYQA QRQRLHGEVQFSPLTMKLALPWKWSVCRTRHD" gene complement(32185622..32186802) /locus_tag="TCM_016278" /note="dbxref CacaoGD:Thecc1EG016278" mRNA complement(join(32185622..32185862,32185969..32186212, 32186328..32186414,32186530..32186802)) /locus_tag="TCM_016278" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028932001" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc5991t1" CDS complement(join(32185824..32185862,32185969..32186212, 32186328..32186414,32186530..32186774)) /locus_tag="TCM_016278" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24779.1" /translation="MSISSLCWAHLLGEEIESNILAFRVFSGLHQDPGLILIPFLVLF FLSFSIITNGSEGGKSFEDLDLDSQLEVLNKPLVKSIRLKGVILSTVLISIDNQPLII LCLRTIKFIIFPLVNDNNVVDETSSSLEGLMSANSPSKSLEIPMLKNGGCPSGTVPIR RANKEELIRTKLFKKRHMKDIHPTASNSPGFHNAIRILPNDQSR" mobile_element 32186277..32186324 /note="source:CACAO_Mariner_E6_scaffold_1 3082 3129" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 32186331..32186399 /note="source:CACAO_Mariner_E6_scaffold_1 3087 3154" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(32187315..32188482) /locus_tag="TCM_016279" /note="dbxref CacaoGD:Thecc1EG016279" mRNA complement(join(32187315..32187811,32187945..32188082, 32188160..32188203,32188305..32188482)) /locus_tag="TCM_016279" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10697t1" CDS complement(join(32187788..32187811,32187945..32188082, 32188160..32188203,32188305..32188311)) /locus_tag="TCM_016279" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24780.1" /translation="MDALQGDNYTQTFASWSAGKKGCYNMLCTGSVQVNKAIPLGFIL HNISVYGGQKFDFGYFISQDLDTGNW" gene complement(32188497..32189377) /locus_tag="TCM_016280" /note="dbxref CacaoGD:Thecc1EG016280" mRNA complement(join(32188497..32189005,32189125..32189377)) /locus_tag="TCM_016280" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6314t1" CDS complement(join(32188784..32189005,32189125..32189307)) /locus_tag="TCM_016280" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24781.1" /translation="MAPGFISGFHQGSGLMLATFLLLFSLSFSIVINGLERQKSFQDL DLEQLRILNKPFLKSIKTDECCVNIDKQPAFDHPLLKNHQIQVFPLPLYLYYRRTSVK PEWLLKHVWLSNPTIIIIHQCHHLYIIYCYPL" mobile_element complement(32190492..32190930) /note="source:scaffold_4_CACTA_0482 5946 6382" /mobile_element_type="transposon:TIR/CACTA" gene complement(32191164..32193801) /locus_tag="TCM_016281" /note="dbxref CacaoGD:Thecc1EG016281" mRNA complement(32191164..32193801) /locus_tag="TCM_016281" /product="Cytochrome P450, family 86, subfamily A, polypeptide 8" /inference="alignment:exonerate- protein:2:ricco:30190.m011234" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005314t2" /inference="similar to AA sequence:ricco:30190.m011234" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS complement(32191592..32193217) /locus_tag="TCM_016281" /note="dbxref ricco:30190.m011234; paralog of Thecc1EG005314t2" /codon_start=1 /product="Cytochrome P450, family 86, subfamily A, polypeptide 8" /protein_id="EOY24782.1" /db_xref="TAIR:AT2G45970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23066" /translation="MDASTALMILSAIAAYLVWFKLITRSLHGPRVWPLLGSLPGLIQ NSNCMHEWIAENLRACGGTYQTCISAIPFLARKQGLVTVTCDPKNLEHILKGRFDNYP KGPNWQAVFHDLLGDGIFNSDGDTWLFQRKTAALEFTTRTLRQAMARWVSRAIKHRFC PILETAQLQGKPVDLQDLLLRLTFDNICGLTFGKDPQTLSPGLPENGFAMAFDRATEA TLQRFILPEIIWKLKKWFRLGMEVKLSQSLEHMDKFLSDIINTRKLELVSQRQGGTPH DDLLSRFMKKKEAYSDEFLQNVALNFILAGRDTSSVALCWFFWLVIQNPRVEEKILIE ICTVLVETRGADTSKWVDEPLVFEEVDRLIYLKAALSETLRLYPSVPQDSKHVIADDV LPSGTFVPSGSNVTYSIYSIGRMKFIWGEDCLDFKPERWLSEDGNKYEAKDSYKFLAF NAGPRICLGKDLAYLQMKSIATAVLLRHRLTIMAGHRVEQKMSLTLFMKYGLLVDVHP RNLKPVLEKICKASESSSPKGNHEELAAAAGVA" mobile_element complement(32196333..32197018) /note="source:CACAO_on_E445_scaffold_2 1 703" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(32199259..32201247) /locus_tag="TCM_016284" /note="dbxref CacaoGD:Thecc1EG016284" mRNA complement(32199259..32201247) /locus_tag="TCM_016284" /product="BTB/POZ domain with WD40/YVTN repeat-like protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011235" /inference="similar to AA sequence:ricco:30190.m011235" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10708t1" CDS complement(32199611..32201020) /locus_tag="TCM_016284" /note="dbxref ricco:30190.m011235" /codon_start=1 /product="BTB/POZ domain with WD40/YVTN repeat-like protein" /protein_id="EOY24783.1" /db_xref="TAIR:AT5G41330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKG0" /translation="MSSFGMQCLETEPELNSNVVTINVGGQIFQTTKQTLTQGGPKSL LSQLAETTSKRFVDRDPDYFSLLLSLLRSGTLPSKVKDFDLHDLIEESRFYGLESLLN NSLTNPSHFDAFALQKSLILPLNGRDSPSTIATTPSGTVHVAHGSKITSFDWSLTRKS TILTQFTAVDSLLAISPDIAAAGATDFSGLQILDLQNGSVKQVLNWENVTRSGSTVQA IGSSSEFLFTSFESGRRNSNSIMVYDLNTLNPVTEIGHNEIFGADLDSAIPATKLRWV TGYGLVMASGSHSGLSGVSGNIKFWDIRSGNVVFELKEKDDCFSDVCVSDNLNAIFKV GVNSGEVFYTDLRSLGSVSDDANDNSNPWICLGNSRKVVNGKKEGYGCKIESHGNQVF CSKGGDIELWSEVVMGSAKISEGPLKERRVFRKNLMGRVKDLGGLRITNLAFGGNRMF VIRKDQQAVEIWQGSTRGI" gene complement(32201808..32205271) /locus_tag="TCM_016286" /note="dbxref CacaoGD:Thecc1EG016286" mRNA complement(join(32201808..32203630,32205054..32205271)) /locus_tag="TCM_016286" /product="Hydroxyproline-rich glycoprotein family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015219t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09590.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10706t1" CDS complement(join(32202368..32203630,32205054..32205167)) /locus_tag="TCM_016286" /note="paralog of Thecc1EG015219t1" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein" /protein_id="EOY24784.1" /db_xref="Phytozome:POPTR_0001s09590.1" /db_xref="TAIR:AT5G52430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKF9" /translation="MRGANGESIAMNNTLETIHAAANAIASAENRVPQATVQKRRWGG CWSIYWCFGSYKQKKRIGPAVLTSETSFSGANVPAAENPTQAPAIALPFVAPPSSPAS FLPSEPPSATQSPAGLVSLTSISASMYSPGPASIFAIGPYAHETQLVSPPVFSTFTTE PSTAPFTPPPESVHLTTPSSPEVPFAQLLGPNLQYGEGVQRFPISHYEFQSYQLHPGS PVGQLISPSSGISGSGTSSPFRDGEFAASLHFPEFRMGDPPKLLNLDKHSSCEWGSHH GSGTLTPDATRSTPRNGFLLDHQISEITSHPHLKNKEVQNDQVAHNHRVSFELTTEEV VRSLEMETATPSEAVSGSLQIEATRESEEHDTKVVDDYECRVGETSNERPEKALADRE GKPQHHKHQSITLGSAKEFNFDNVDGGDAHKPILTSDWWANDKVAGKGGGVPRNWSFF PMMQPGVR" mobile_element complement(32203339..32204600) /note="source:CACAO_Again_on_E160_scaffold_6 3997 5149" /mobile_element_type="transposon:TIR/hAT" gene complement(32205406..32217165) /locus_tag="TCM_016287" /note="dbxref CacaoGD:Thecc1EG016287" mRNA complement(join(32205406..32205630,32208762..32209115, 32209203..32209274,32209426..32209542,32209676..32209786, 32209876..32210051,32210134..32210215,32210337..32210483, 32210624..32210762,32210848..32210996,32211231..32211414, 32211502..32211582,32211661..32211770,32211869..32212037, 32212130..32212157,32212290..32212338,32212457..32212504, 32212653..32212733,32212826..32212889,32213054..32213079, 32213177..32213263,32213350..32213377,32213510..32213571, 32213656..32213868,32213949..32214056,32214151..32214225, 32214311..32214424,32214602..32214678,32214903..32214978, 32215086..32215226,32215408..32215452,32215596..32215676, 32216005..32216101,32217150..32217165)) /locus_tag="TCM_016287" /product="Peptidase M1 family protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G63770.5" /inference="similar to AA sequence:Phytozome:POPTR_0001s09600.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11455t4" CDS complement(join(32209035..32209115,32209203..32209274, 32209426..32209542,32209676..32209786,32209876..32210051, 32210134..32210215,32210337..32210483,32210624..32210762, 32210848..32210996,32211231..32211414,32211502..32211582, 32211661..32211770,32211869..32212037,32212130..32212157, 32212290..32212338,32212457..32212504,32212653..32212733, 32212826..32212889,32213054..32213079,32213177..32213263, 32213350..32213377,32213510..32213571,32213656..32213868, 32213949..32214056,32214151..32214225,32214311..32214424, 32214602..32214678,32214903..32214978,32215086..32215226, 32215408..32215452,32215596..32215676,32216005..32216082)) /locus_tag="TCM_016287" /codon_start=1 /product="Peptidase M1 family protein" /protein_id="EOY24785.1" /db_xref="Phytozome:POPTR_0001s09600.1" /db_xref="TAIR:AT1G63770.5" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I3R1" /translation="MARLILPCKSSCLARTSLLGLISSAPLQAKSSVSSFQSSVKNIS WYRCFSILEATGRRNYRFPHSSPYRARQTSRRLLCSVATEPLPKQVEESKMDTPKEIF LKDYKSPDYYFDTVDLKFSLGEEKTIVASKITVFPRVEGSSSPLVLDGVDLKLISIKV NGKELKEGDYYLDPRRLTLPSPPSGKFTLEIDTEIHPQKNTSLEGLYKSSGNFCTQCE AEGFRKITFYQDRPDIMAKYTCRIEADKSLYPVLLSNGNLIEQGALEGGKHYAVWEDP FKKPCYLFALVAGQLESRDDIFVTRSGRQVSLRIWTPAQDVPKTAHAMYSLKAAMKWD EDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVI GHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIADVSKLRNYQF PQDAGPMAHPVRPHSYIKMDNFYTGKFLLYLIEMLTVRPSNLHLFMKRFEYLTQNLTR LHMFVGKNYINASIIHPYNSTYQGAEVVRMYKTLLGTQGFRKGMDLYFERHDGQAVTC EDFFAAMRDANDADFANFLLWYSQAGTPVVKVTSSYNADAHTFSLKFSQVVPSTPGQP VKEPTFIPVAVGLLDSSGRDMPLSSVYHDGTLQSVASNDQPVFSTVLRVTKKEEEFVF SDILERPIPSLLRGYSAPIRLESDLSDSDLFFLLAHDSDEFNRWEAGQLLARKLMLSL VADFQQNKPLSLNPKFVEGLRSILCNTSLDKEFIAKAITLPGEGEIMDMMEVADPDAV HAVRTFIRKELASQLKSEFLSTVQNNRSSEEYVFNHPNMAQRALKNTALAYLASLEDL EMTGLALHEYNTATNMTEQFAALAAIAQKPDKTRDDVLADFYSKWQHDFLVVNKWFAL QAMSDVPGNVENVRNLLNHPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGYKFLGEI VVQLDKLNPQVASRMVSAFSRWRRFDEIRQKLARAQLEMIMSANGLSENVYEIASKSL AA" gene complement(32217885..32220919) /locus_tag="TCM_016288" /note="dbxref CacaoGD:Thecc1EG016288" mRNA complement(join(32217885..32218248,32219654..32219782, 32219901..32219953,32220112..32220226,32220677..32220756, 32220872..32220919)) /locus_tag="TCM_016288" /product="Ubiquitin-conjugating enzyme 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g07540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005305t2" /inference="similar to AA sequence:ricco:30190.m011244" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08495t00001" CDS complement(join(32218115..32218248,32219654..32219782, 32219901..32219953,32220112..32220226,32220677..32220756, 32220872..32220915)) /locus_tag="TCM_016288" /note="dbxref ricco:30190.m011244; paralog of Thecc1EG005305t2" /codon_start=1 /product="Ubiquitin-conjugating enzyme 5" /protein_id="EOY24786.1" /db_xref="TAIR:AT1G63800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42749" /translation="MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESPY HGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNV FEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYEQRVKEYCEKYAKPEDVGAAPEEKS SDEELSEDEYAASDDEEIAGKPDP" gene complement(32223354..32226402) /locus_tag="TCM_016289" /note="dbxref CacaoGD:Thecc1EG016289" mRNA complement(join(32223354..32224701,32225067..32226402)) /locus_tag="TCM_016289" /product="ARID/BRIGHT DNA-binding domain,ELM2 domain protein, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011245" /inference="similar to AA sequence:Phytozome:POPTR_0001s09620.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10715t1" CDS complement(join(32223817..32224701,32225067..32226032)) /locus_tag="TCM_016289" /codon_start=1 /product="ARID/BRIGHT DNA-binding domain,ELM2 domain protein, putative" /protein_id="EOY24787.1" /db_xref="Phytozome:POPTR_0001s09620.1" /db_xref="TAIR:AT4G11400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKF6" /translation="MAGWSILTNGSALDCVGTVNNCQSNGCHLDDDPVTKNSVEEFGD HRNRLRCLFDLVLSGYLKEVACKGFVRRMPAMLGNDGHSLDLLKLFLVVREIGGYEFV SKKGLWAFVVKELGLDLEVSASVKLIYAKYLNELEKWLRNSLVDRNGEGAGGGKFRFL SLEQEEEFRGLFTNGVDQKVVVNRVALSEYIKNDKCIAKDSKKNGLKISDANSRYRLH SGVEEVFSDNDEKVCRNDLGVLDPPVARKEFSTRKRKRESLAGMLNWVTQVAKCHDDP SVWAIAEPSKWKDHGGNEFWIQAIRAREAIRQKRDDHSVTEQSLLQNNKKMHPSMYED GILSHHLTERSRCSEKLPTTQSRSCSCCSSDSALQKNSMCRHKTESECGLKEQSPVTI DSSSLDMTVEPSGDDSLRRQVSVGLRFQAEVPEWTGMVSDTDSKWLGTQEWPLKAVEH DPLAVKDPIGRGRDDSCGCPIPGTVECIRLHIAEKRMKLKLELGSVFYRWRFGGMGEE VSLRWTAEEENRFTYMVQLEPPSLNAFWPDASKFFPRKTRQELVSYYFNVFLIRRRSY QNRVTPNSIDSDDDESEFGCISDSFGSGALKVPGSNMLTCSQNNQCIDWE" mobile_element 32226428..32226521 /note="source:scaffold_7_CACTA_0795 1838 1932" /mobile_element_type="transposon:TIR/CACTA" gene complement(32227789..32231357) /locus_tag="TCM_016290" /note="dbxref CacaoGD:Thecc1EG016290" mRNA complement(join(32227789..32228576,32228679..32228788, 32228927..32229359,32230023..32230168,32231313..32231357)) /locus_tag="TCM_016290" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011246" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005300t1" /inference="similar to AA sequence:ricco:30190.m011246" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07168t00001" CDS complement(join(32228550..32228576,32228679..32228788, 32228927..32229359,32230023..32230088)) /locus_tag="TCM_016290" /note="dbxref ricco:30190.m011246; paralog of Thecc1EG005300t1" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY24788.1" /db_xref="TAIR:AT5G41350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWT6" /translation="MGGCCCCSSKGVEISSAPGYYYYPRASDERVPLSSHSGAASALS TGLLVDTNLEVSVPDAYRPPPAPMPFDAVLGPSQNPSVAQGIHNSKSDEAVQTTHVDS GQETVGVDTRETSIKSEDTKESDCKAQFNTEIESPKGLEVELSKPVESIAPTKEEEDV CPTCLEEYDAENPKIITKCEHHFHLACILEWMERSDTCPVCDKEMIFDLPT" mobile_element complement(32231570..32231581) /note="source:CACAO_M_E24751_F297_scaffold_4 1261 1319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32231582..32231656 /note="source:scaffold_6_CACTA_0706 1408 1484" /mobile_element_type="transposon:TIR/CACTA" gene complement(32233066..32236851) /locus_tag="TCM_016291" /note="dbxref CacaoGD:Thecc1EG016291" mRNA complement(join(32233066..32233530,32233633..32233701, 32233801..32233860,32234030..32234166,32234269..32234413, 32235341..32235712,32235817..32235964,32236621..32236851)) /locus_tag="TCM_016291" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033988t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s09640.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b015740t1a3; alternateUTRof:Thecc1EG016291t2; inference alignment:Newbler:10:TSA:cgbaL_g02218t00002" mRNA complement(join(32233066..32233530,32233633..32233701, 32233801..32233860,32234030..32234166,32234290..32234413, 32235341..32235712,32235817..32235964,32236621..32236843)) /locus_tag="TCM_016291" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033988t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s09640.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b015740t1a2; alternateUTRof:Thecc1EG016291t1; inference alignment:Newbler:10:TSA:cgbaL_g02218t00002" mRNA complement(join(32233256..32233530,32233633..32233701, 32233801..32233860,32234030..32234166,32234290..32234413, 32235341..32235624,32235704..32235712,32235817..32235964, 32236621..32236786)) /locus_tag="TCM_016291" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033988t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s09640.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02218t00002; inference alignment:Newbler:10:TSA:cgbaL_g02218t00002" mRNA complement(join(32233256..32233530,32233633..32233701, 32233801..32233860,32234030..32234166,32234269..32234413, 32235341..32235712,32235817..32235964,32236621..32236786)) /locus_tag="TCM_016291" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033988t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s09640.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02218t00001; inference alignment:Newbler:10:TSA:cgbaL_g02218t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc354t5" CDS complement(join(32233441..32233530,32233633..32233701, 32233801..32233860,32234030..32234166,32234290..32234413, 32235341..32235532)) /locus_tag="TCM_016291" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG033988t2" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24789.1" /db_xref="Phytozome:POPTR_0001s09640.1" /db_xref="TAIR:AT1G75060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKF4" /translation="MLEHELCSSRVLSPFREESGDEELSVLPRHTKVIVRGNNRTKSV LVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEHPTGNEVDDDHDFDNSSSG SDIASSIEYHRPAKPRVRHTKPWVPSAPIKSTNRSGYRDVRSIIHAPQLVNLARLDTD SLRRYCKHFKLGGINAYSPREQMLNTVQQHFVSQPPLNEVQVISEFISVAKRLKTDDT QSEQL" CDS complement(join(32233441..32233530,32233633..32233701, 32233801..32233860,32234030..32234166,32234290..32234413, 32235341..32235532)) /locus_tag="TCM_016291" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG033988t2" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24792.1" /db_xref="Phytozome:POPTR_0001s09640.1" /db_xref="TAIR:AT1G75060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKF4" /translation="MLEHELCSSRVLSPFREESGDEELSVLPRHTKVIVRGNNRTKSV LVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEHPTGNEVDDDHDFDNSSSG SDIASSIEYHRPAKPRVRHTKPWVPSAPIKSTNRSGYRDVRSIIHAPQLVNLARLDTD SLRRYCKHFKLGGINAYSPREQMLNTVQQHFVSQPPLNEVQVISEFISVAKRLKTDDT QSEQL" CDS complement(join(32233441..32233530,32233633..32233701, 32233801..32233860,32234030..32234166,32234269..32234413, 32235341..32235532)) /locus_tag="TCM_016291" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG033988t2" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24790.1" /db_xref="Phytozome:POPTR_0001s09640.1" /db_xref="TAIR:AT1G75060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKF4" /translation="MLEHELCSSRVLSPFREESGDEELSVLPRHTKVIVRGNNRTKSV LVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEHPTGNEVDDDHDFDNSSSG SDIGEKDHDFSSSIEYHRPAKPRVRHTKPWVPSAPIKSTNRSGYRDVRSIIHAPQLVN LARLDTDSLRRYCKHFKLGGINAYSPREQMLNTVQQHFVSQPPLNEVQVISEFISVAK RLKTDDTQSEQL" CDS complement(join(32233441..32233530,32233633..32233701, 32233801..32233860,32234030..32234166,32234269..32234413, 32235341..32235532)) /locus_tag="TCM_016291" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG033988t2" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24791.1" /db_xref="Phytozome:POPTR_0001s09640.1" /db_xref="TAIR:AT1G75060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKF4" /translation="MLEHELCSSRVLSPFREESGDEELSVLPRHTKVIVRGNNRTKSV LVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEHPTGNEVDDDHDFDNSSSG SDIGEKDHDFSSSIEYHRPAKPRVRHTKPWVPSAPIKSTNRSGYRDVRSIIHAPQLVN LARLDTDSLRRYCKHFKLGGINAYSPREQMLNTVQQHFVSQPPLNEVQVISEFISVAK RLKTDDTQSEQL" mobile_element 32238651..32238696 /note="source:CACAO_M_S_E6245_F266_scaffold_2 1067 1112" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32239503..32242365) /locus_tag="TCM_016294" /note="dbxref CacaoGD:Thecc1EG016294" mRNA complement(join(32239503..32239871,32240086..32240149, 32240847..32240996,32241482..32241590,32241731..32241802, 32241903..32241925,32242342..32242365)) /locus_tag="TCM_016294" /product="RNA-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019390001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041684t4" /inference="similar to AA sequence:ricco:30190.m011248" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10111t2" CDS complement(join(32239687..32239871,32240086..32240149, 32240847..32240996,32241482..32241590,32241731..32241802, 32241903..32241925)) /locus_tag="TCM_016294" /note="dbxref ricco:30190.m011248; paralog of Thecc1EG041684t4" /codon_start=1 /product="RNA-binding family protein" /protein_id="EOY24793.1" /db_xref="TAIR:AT1G07350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HP82" /translation="MSYSRETRSVSPARGRRSRSLSRSRRSRSRSRSRSQDASNPGNN LYVTGLSTRVTTADLEKYFGNEGKVVECHLVTDPRTRESRGFAFVTMETVEGAERCIK YLNRSVLEGRLITVEKAKRSRGRTPTPGRYHGLRDRRGQGRRRSRSYSPRRYDRDYHS RGRQGRSRSRSPYGRKRDDYDSYRRRRERSLSGDGSGYRR" mobile_element complement(32242652..32243320) /note="source:CACAO_M_E49279_F74_scaffold_6 1268 1937" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32243683..32247036) /locus_tag="TCM_016295" /note="dbxref CacaoGD:Thecc1EG016295" mRNA complement(join(32243683..32243957,32244077..32244229, 32244377..32244503,32244596..32244614,32244707..32244739, 32245732..32245796,32245892..32246577,32246721..32247036)) /locus_tag="TCM_016295" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10734t3" CDS complement(join(32244200..32244229,32244377..32244503, 32244596..32244614,32244707..32244739,32245732..32245796, 32245892..32245998)) /locus_tag="TCM_016295" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24794.1" /translation="MPKTTMSILVEDCANQCSKHGIGQSYEDASGSTSYSCCSCDKSH WGFDFSIDLVSKELHGLLALFHGCAATDPTRATNIVLVVAAAFLALLVGCLQEFYTKH VTFKFSTGLPEHIQEAAKHGGTGC" gene complement(32247112..32248526) /locus_tag="TCM_016296" /note="dbxref CacaoGD:Thecc1EG016296" mRNA complement(join(32247112..32247288,32247503..32247566, 32248249..32248526)) /locus_tag="TCM_016296" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc2290t1" CDS complement(join(32247261..32247288,32247503..32247566, 32248249..32248507)) /locus_tag="TCM_016296" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24795.1" /translation="MEYFLWTLLVLNINFGSVTNPFAKRSSVMGFLNFKCVFIFFSWL LVLASSSSSSSFSYYVVSNVFTFGSFNVSPTTLPPCNWRYIRVKLPPFYSSTSIVINT DVSLVESIVAHLTL" gene complement(32248908..32256095) /locus_tag="TCM_016297" /note="dbxref CacaoGD:Thecc1EG016297" mRNA complement(join(32248908..32250386,32256086..32256095)) /locus_tag="TCM_016297" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.66 coverage" CDS complement(32249895..32250206) /locus_tag="TCM_016297" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24796.1" /translation="MLGNNVICEDIIAAISSDITNPGTEGRKLTDLWISRLVISNKSI NCCFLNYSVSLLPLMVLLVMLLVRFCRPWTTSWCLLPFEGVTSFFVQLFANGCSVPIR L" mobile_element 32250976..32251254 /note="source:scaffold_1_CACTA_0004 1 282" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32251907..32252438) /note="source:INTACT801_F10_scaffold_4-int 1505 2037" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32252414..32252661 /note="source:CACAO_M_E44210_F112_scaffold_5 10001 10226" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(32252445..32252693) /note="source:CACAO_M_E58877_F5_scaffold_9 20466 20708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32252449..32252725 /note="source:CACAO_M_E69938_F9_scaffold_9 3584 3826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32252725..32252773 /note="source:CACAO_M_E69938_F9_scaffold_9 3971 4095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32252774..32252871) /note="source:CACAO_M_E52694_F25_scaffold_8 4640 4759" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32252872..32252894 /note="source:CACAO_M_E69938_F9_scaffold_9 4096 4160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32255118..32256189) /note="source:INTACT174_F38_scaffold_5-int 915 1994" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32256190..32257590 /note="source:CACAO_M_E59487_F9_scaffold_9 1 1427" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32257592..32257999) /note="source:INTACT409_F10_scaffold_9-int 4493 4920" /mobile_element_type="retrotransposon:LTR/Copia" gene 32257804..32262967 /locus_tag="TCM_016298" /note="dbxref CacaoGD:Thecc1EG016298" mRNA join(32257804..32257903,32258222..32258374, 32258514..32258778,32258856..32259231,32259338..32259556, 32259634..32259772,32259886..32260135,32260305..32260560, 32261648..32262125,32262702..32262967) /locus_tag="TCM_016298" /product="Myrcene synthase, chloroplastic, putative" /inference="alignment:exonerate- protein:2:ricco:30131.m007001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016299t1" /inference="similar to AA sequence:ricco:29771.m000073" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10726t1" CDS join(32257856..32257903,32258222..32258374, 32258514..32258778,32258856..32259231,32259338..32259556, 32259634..32259772,32259886..32260135,32260305..32260531) /locus_tag="TCM_016298" /note="dbxref ricco:29771.m000073; paralog of Thecc1EG016299t1" /codon_start=1 /product="Myrcene synthase, chloroplastic, putative" /protein_id="EOY24797.1" /db_xref="TAIR:AT3G25830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93X23" /translation="MICYSSINRFKYYLNKKIEASIMSFPLLASVPSCNFITNRSNDR RSTNYHPSIWNDNYIQSLESEYLGKSCYERANKLVGEVRMMLDKEINLLEQLELIDSL QRLGLSYHFENEIKTILDSISADHINVAWKKDNLHAIAIEFRLLRQHGYKVTQEVFSS FTDEMGNFKASLCEDCKGLLNLYEASYHLVEGEGMLEKARDFAAKRLKEYLKQNKDPY LSLLVEHALELPLHWRMPRFEARFFIDVYERREDRNPILLELANLDFNIVQAVHQDDL KYASKWWTDLDIRKKLTFARDRLMENFLFAVGEASDPQFGYFRRTQTKINTFITTIDD VYDVYGTLDELELFTEAVERWDTNAMQLLPEYMQICFLALYNFINEIAFDVLKGKGFN TIPFLKKAWADLCKSYLLEAKWYYSGYTPTLQEYIDNAWISISGPVVLSHAFVLTNLK TKECLESFKEYSNIIYYSCMICRLVNDLGTSLIQEARRHIWKLIDATWRRMNEERIAD SLFPRPFIQIAVNLARTAQFMYQHHDGYGVEDGETKERVLSLFVNPIPLR" mobile_element complement(32258356..32258422) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3116 3179" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 32261550..32269812 /locus_tag="TCM_016299" /note="dbxref CacaoGD:Thecc1EG016299" mRNA join(32261550..32261975,32262702..32263174, 32266992..32267419,32267568..32267832,32267907..32268282, 32268355..32268573,32268650..32268788,32268903..32269148, 32269253..32269812) /locus_tag="TCM_016299" /product="Myrcene synthase, chloroplastic, putative" /inference="alignment:exonerate- protein:2:ricco:29771.m000073" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016298t1" /inference="similar to AA sequence:ricco:29771.m000073" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1410t2" mobile_element 32262978..32263763 /note="source:CACAO_Again_on_S_E38_scaffold_1 2 789" /mobile_element_type="transposon:TIR/hAT" CDS join(32267195..32267419,32267568..32267832, 32267907..32268282,32268355..32268573,32268650..32268788, 32268903..32269148,32269253..32269549) /locus_tag="TCM_016299" /note="dbxref ricco:29771.m000073; paralog of Thecc1EG016298t1" /codon_start=1 /product="Myrcene synthase, chloroplastic, putative" /protein_id="EOY24798.1" /db_xref="TAIR:AT3G25810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93X23" /translation="MSFPLLAPAPSCNFITTHCHSISNKSNVKRSIVVQARKFVATAQ GFDQKIDRRSANYHLSIWKDNYIQSLKSECLGKSCYERANKLVGEVRMMLDKEINPLE QLELIDTLQRLGLSYHFENEIKTILDSVSADHIDVAWKKDNLYATAIEFRLLRQHGYK VTQEVFSTFTDEKGNFKASLCEDCKGLLNLYEASYHLVEGENMLEKARDFAAKRLKEY LKQNKDPYLSLLVEHALELPLHWRMPRFEARFFIDVYEGREDRNPILLELAKLDFNMV QAAHQDDLKYASKWWRDLGIGKKLTFARDRSMENFLWTVGEASDPQFGYFRRIETKIN TFIATIDDVYDVYGTLDELELFTEAVDRWDTNAMQLLPEYMQICFLALYNFVNEMAFD VLKDKGFDTIPFLTKAWADMCKSFLLEAKWYYSGYTPTLREYIDNAWISVTAPVILSH AYVLTNLKTNECFESFEEYSNIIYCSSIIFRLANDLATSSDELKRGDVPKSIQCYMHE TGASEEEARRHIWKLIDATWRRMNEEQIVGSRFPRPFIQIAVNLARTAQFMYQHHDGY GVEDGETKERVLSLFVNPIPLR" gene complement(32270274..32277950) /locus_tag="TCM_016300" /note="dbxref CacaoGD:Thecc1EG016300" mRNA complement(join(32270274..32271125,32271347..32271550, 32271624..32271813,32272057..32272469,32272934..32273026, 32273696..32273875,32273974..32274037,32274175..32274386, 32274490..32274582,32274723..32274902,32275017..32275152, 32275503..32275753,32275872..32275985,32276645..32276842, 32277417..32277950)) /locus_tag="TCM_016300" /product="Adaptin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13040.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13040.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10775t2" mRNA complement(join(32270382..32271369,32271623..32271813, 32272057..32272469,32272934..32273026,32273696..32273875, 32273974..32274037,32274175..32274386,32274490..32274582, 32274723..32274902,32275017..32275152,32275503..32275753, 32275872..32275985,32276645..32276842,32277417..32277595)) /locus_tag="TCM_016300" /product="Adaptin family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13040.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13040.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc609t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10775t2" mRNA complement(join(32270382..32271125,32271347..32271813, 32272057..32272469,32272934..32273026,32273696..32273875, 32273974..32274037,32274175..32274386,32274490..32274582, 32274723..32274902,32275017..32275152,32275503..32275753, 32275872..32275985,32276645..32276842,32277417..32277595)) /locus_tag="TCM_016300" /product="Adaptin family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13040.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13040.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc609t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10775t2" CDS complement(join(32270826..32271125,32271347..32271550, 32271624..32271813,32272057..32272469,32272934..32273026, 32273696..32273875,32273974..32274037,32274175..32274386, 32274490..32274582,32274723..32274902,32275017..32275152, 32275503..32275753,32275872..32275985,32276645..32276842, 32277417..32277503)) /locus_tag="TCM_016300" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Adaptin family protein isoform 1" /protein_id="EOY24799.1" /db_xref="Phytozome:POPTR_0003s13040.1" /db_xref="TAIR:AT4G23460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKF2" /translation="MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMT VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED RGFLESLKDLISDNNPMVVANAVAALAEIQENSTRPIFEITSHTLSKLLTALNECTEW GQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV VRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYV KMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCI SVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIW IIGEYAERIDNADELLESFLESFPEEPPQVQLQLLTATVKLFLKKPTEGPQQMIQVVL NNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLA NIATLSSVYHKPPDTFVTRVKPATQRTEDDEYPDGNETGYAESPANAADGGASPPTSS SSVPYGAARQPAPAPAAPAPVAPVPDLLGDLIGLDNNAIVPADQHATSSGPPLPILLP ASTGQGLQISAQLARQDGQIFYSLQFENNSQITLDGFMIQFNKNSFGLAAAGSLQVPP LAPGASRRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKILLHVFFTDDGRM ERTSFLETWRSLPDSNEVLKEFPGIMVSSAEATLDRLAATNMFFIAKRKHANQDVFYF SAKIPRGIPFLIELTTVIGNPGVKCAIKTPNPEMAPLFFEAIETLLKA" CDS complement(join(32271263..32271369,32271623..32271813, 32272057..32272469,32272934..32273026,32273696..32273875, 32273974..32274037,32274175..32274386,32274490..32274582, 32274723..32274902,32275017..32275152,32275503..32275753, 32275872..32275985,32276645..32276842,32277417..32277503)) /locus_tag="TCM_016300" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Adaptin family protein isoform 3" /protein_id="EOY24801.1" /db_xref="Phytozome:POPTR_0003s13040.1" /db_xref="TAIR:AT4G23460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKF2" /translation="MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMT VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED RGFLESLKDLISDNNPMVVANAVAALAEIQENSTRPIFEITSHTLSKLLTALNECTEW GQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV VRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYV KMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCI SVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIW IIGEYAERIDNADELLESFLESFPEEPPQVQLQLLTATVKLFLKKPTEGPQQMIQVVL NNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLA NIATLSSVYHKPPDTFVTRVKPATQRTEDDEYPDGNETGYAESPANAADGGASPPTSS SSVPYGAARQPAPAPAAPAPVAPVPDLLGDLIGLDNNAIVPADQHATSSGPPLPILLP ASTGQGLQISAQLARQDGQIFYSLQFENNSQITLDGFMIQFNKNSFGLAAAGSLQVER TSFLEVRSLFHILLVSCGTKLSKPYSMKDYHC" CDS complement(join(32271594..32271813,32272057..32272469, 32272934..32273026,32273696..32273875,32273974..32274037, 32274175..32274386,32274490..32274582,32274723..32274902, 32275017..32275152,32275503..32275753,32275872..32275985, 32276645..32276842,32277417..32277503)) /locus_tag="TCM_016300" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Adaptin family protein isoform 2" /protein_id="EOY24800.1" /db_xref="Phytozome:POPTR_0003s13040.1" /db_xref="TAIR:AT4G23460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKF2" /translation="MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMT VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED RGFLESLKDLISDNNPMVVANAVAALAEIQENSTRPIFEITSHTLSKLLTALNECTEW GQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV VRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYV KMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCI SVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIW IIGEYAERIDNADELLESFLESFPEEPPQVQLQLLTATVKLFLKKPTEGPQQMIQVVL NNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLA NIATLSSVYHKPPDTFVTRVKPATQRTEDDEYPDGNETGYAESPANAADGGASPPTSS SSVPYGAARQPAPAPAAPAPVAPVPDLLGDLIGLDNNAIVPADQHATSSGPPLPILLP ASTGQGLQISAQLARQDGQIFYSLQFENNSQITLDGFMIQFNKNSFGLAAAGSLQVIM TCVVFS" gene 32278021..32285190 /locus_tag="TCM_016301" /note="dbxref CacaoGD:Thecc1EG016301" mRNA join(32278021..32278191,32278329..32278372, 32278467..32278542,32278632..32278800,32278899..32279121, 32279221..32279277,32279809..32279952,32280372..32280452, 32280586..32280673,32281031..32281368,32281458..32281533, 32281617..32281810,32282098..32282261,32282371..32282443, 32282827..32282940,32283072..32283152,32283302..32283361, 32283540..32283623,32283697..32283839,32284224..32285190) /locus_tag="TCM_016301" /product="Xeroderma pigmentosum complementation group B 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09670.1" /inference="similar to AA sequence:ricco:30190.m011249" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03619t00001" mRNA join(32278021..32278191,32278329..32278372, 32278467..32278542,32278632..32278800,32278899..32279121, 32279221..32279277,32279809..32279914,32281091..32281368, 32281458..32281533,32281617..32281810,32282098..32282261, 32282371..32282443,32282827..32282940,32283072..32283152, 32283302..32283361,32283540..32283623,32283697..>32283811) /locus_tag="TCM_016301" /product="Xeroderma pigmentosum complementation group B 2 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09670.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019392001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03619t00002; inference alignment:Newbler:10:TSA:cgbaB_g03619t00001" CDS join(32278182..32278191,32278329..32278372, 32278467..32278542,32278632..32278800,32278899..32279121, 32279221..32279277,32279809..32279952,32280372..32280452, 32280586..32280673,32281031..32281368,32281458..32281533, 32281617..32281810,32282098..32282261,32282371..32282443, 32282827..32282940,32283072..32283152,32283302..32283361, 32283540..32283623,32283697..32283839,32284224..32284320) /locus_tag="TCM_016301" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011249" /codon_start=1 /product="Xeroderma pigmentosum complementation group B 1 isoform 1" /protein_id="EOY24802.1" /db_xref="TAIR:AT5G41370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38861" /translation="MGHGEKGRPTKKLKFAAKDDHRSSTVEDEYSFYPDEGDDASRDG ENEGKKRDFSKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPE SMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIDFIHASTANYGKVKLV LKKNRYFIESPFPEVLKKLLQDDVIARARIASESAHGSDGFTISKAAGEIGTGHDGLL NEAELAAATEEKETHAFEIDPAQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDME LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIKKSCLCLATN AVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESE KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNF LIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPN KFRACEFLIRFHERERGDKIIVFADNLFALTEYAMKLRKPMIYGATSHLERTKILQAF KTSRDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRM AGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGADLSYYH LDEQLALLGKVLTAGDDAVGLEQLEEDADDIALHKARRSTGSMSAMSGANGMVYMEYS TGKHKYPGQGQIKSKPKDPSKRHYLFKRRYG" CDS join(32278182..32278191,32278329..32278372, 32278467..32278542,32278632..32278800,32278899..32279121, 32279221..32279277,32279809..32279914,32281091..32281368, 32281458..32281533,32281617..32281810,32282098..32282261, 32282371..32282443,32282827..32282940,32283072..32283152, 32283302..32283361,32283540..32283623,32283697..>32283810) /locus_tag="TCM_016301" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Xeroderma pigmentosum complementation group B 2 isoform 4" /protein_id="EOY24805.1" /db_xref="Phytozome:GSVIVT01019392001" /db_xref="TAIR:AT5G41360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38861" /translation="MGHGEKGRPTKKLKFAAKDDHRSSTVEDEYSFYPDEGDDASRDG ENEGKKRDFSKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPE SMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIDFIHASTANYGKVKLV LKKNRYFIESPFPEVLKKLLQDDVIARARIASESAHGSDGFTISKAAGEIGTGHDGLL NEAELAAATEVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKE RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHERERGDKIIVFADNLFALT EYAMKLRKPMIYGATSHLERTKILQAFKTSRDVNTIFLSKVGDNSIDIPEANVIIQIS SHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQF LIDQGYSFKVITSLPPPDAGADLSYYHLDEQLALLGKVLTAGDDAVGLEQLEEDADDI ALHKARRSTGSMSAMSG" mRNA join(<32278348..32278542,32278632..32278800, 32278899..32279121,32279221..32279277,32279809..32279952, 32280372..32280452,32280586..32280673,32281031..32281368, 32281458..32281533,32281617..32281810,32282098..32282261, 32282371..32282443,32282827..32283072,32283302..32283361, 32283540..32283623,32283697..32283839,32284224..32284830) /locus_tag="TCM_016301" /product="Xeroderma pigmentosum complementation group B 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09670.1" /inference="similar to AA sequence:ricco:30190.m011249" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc421t6; inference alignment:Newbler:10:TSA:cgbaB_g03619t00001" mRNA join(<32278348..32278542,32278632..32278800, 32278899..32279121,32279221..32279277,32279809..32279952, 32280372..32280452,32280586..32280673,32281031..32281368, 32281458..32281533,32281617..32281810,32282098..32282261, 32282371..32282443,32282827..32282940,32283072..32283152, 32283302..32283361,32283540..32283839,32284224..32284830) /locus_tag="TCM_016301" /product="Xeroderma pigmentosum complementation group B 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09670.1" /inference="similar to AA sequence:TAIR:AT5G41360.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc421t5; inference alignment:Newbler:10:TSA:cgbaB_g03619t00001" CDS join(<32278350..32278542,32278632..32278800, 32278899..32279121,32279221..32279277,32279809..32279952, 32280372..32280452,32280586..32280673,32281031..32281368, 32281458..32281533,32281617..32281810,32282098..32282261, 32282371..32282443,32282827..32283072,32283302..32283361, 32283540..32283623,32283697..32283839,32284224..32284320) /locus_tag="TCM_016301" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011249" /codon_start=1 /product="Xeroderma pigmentosum complementation group B 2 isoform 2" /protein_id="EOY24803.1" /db_xref="TAIR:AT5G41370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38861" /translation="RSLNLLPRSSKSSIFLYKIFGIYFFFPTKAIIVYLFILQDDHRS STVEDEYSFYPDEGDDASRDGENEGKKRDFSKLELKPDHANRPLWACADGRIFLETFS PLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKL PKEMIDFIHASTANYGKVKLVLKKNRYFIESPFPEVLKKLLQDDVIARARIASESAHG SDGFTISKAAGEIGTGHDGLLNEAELAAATEEKETHAFEIDPAQVENVKQRCLPNALN YPMLEEYDFRNDTVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGK SLVGVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNA GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSH CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF AEYLKKENSKKKQALYVMNPNKFRACEFLIRFHERERGDKIIVFADNLFALTEYAMKL RKPMIYGATSHLERTKILQAFKTSRDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSR RQEAQRLGRILRAKVSLTVSILPLKITSFIFLLAGYVGNESVHQCNMHKFEVFIWVNR EMYYSTKRQQFLIDQGYSFKVITSLPPPDAGADLSYYHLDEQLALLGKVLTAGDDAVG LEQLEEDADDIALHKARRSTGSMSAMSGANGMVYMEYSTGKHKYPGQGQIKSKPKDPS KRHYLFKRRYG" CDS join(<32278350..32278542,32278632..32278800, 32278899..32279121,32279221..32279277,32279809..32279952, 32280372..32280452,32280586..32280673,32281031..32281368, 32281458..32281533,32281617..32281810,32282098..32282261, 32282371..32282443,32282827..32282940,32283072..32283152, 32283302..32283361,32283540..32283713) /locus_tag="TCM_016301" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Xeroderma pigmentosum complementation group B 2 isoform 3" /protein_id="EOY24804.1" /db_xref="TAIR:AT5G41360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38861" /translation="RSLNLLPRSSKSSIFLYKIFGIYFFFPTKAIIVYLFILQDDHRS STVEDEYSFYPDEGDDASRDGENEGKKRDFSKLELKPDHANRPLWACADGRIFLETFS PLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKL PKEMIDFIHASTANYGKVKLVLKKNRYFIESPFPEVLKKLLQDDVIARARIASESAHG SDGFTISKAAGEIGTGHDGLLNEAELAAATEEKETHAFEIDPAQVENVKQRCLPNALN YPMLEEYDFRNDTVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGK SLVGVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNA GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSH CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF AEYLKKENSKKKQALYVMNPNKFRACEFLIRFHERERGDKIIVFADNLFALTEYAMKL RKPMIYGATSHLERTKILQAFKTSRDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSR RQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY SFKVITSLPPPDAGADLSYYHLDEQLALLGKVLILPHFYTFKIFQAIVTDRFYASGFD RW" gene complement(32287882..32292336) /locus_tag="TCM_016302" /note="dbxref CacaoGD:Thecc1EG016302" mRNA complement(join(32287882..32288244,32290348..32290822, 32290944..32291105,32291281..32291457,32291594..32292336)) /locus_tag="TCM_016302" /product="Zinc finger protein CONSTANS-LIKE 1, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011250" /inference="similar to AA sequence:Phytozome:POPTR_0003s13050.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b015751t1a2; inference alignment:Newbler:10:TSA:cgbaB_g09727t00001" mRNA complement(join(32287882..32288244,32290348..32290822, 32290944..32291105,32291281..32291457,32291570..32292336)) /locus_tag="TCM_016302" /product="Zinc finger protein CONSTANS-LIKE 1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011250" /inference="similar to AA sequence:Phytozome:POPTR_0003s13050.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09727t00001" CDS complement(join(32290727..32290822,32290944..32291105, 32291281..32291457,32291594..32292169)) /locus_tag="TCM_016302" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Zinc finger protein CONSTANS-LIKE 1, putative isoform 2" /protein_id="EOY24807.1" /db_xref="Phytozome:POPTR_0003s13050.1" /db_xref="TAIR:AT5G41380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWU0" /translation="MSCNLSVSNDSSVNRYIPEMVSTDTIDYPLLFDHPFSPFQDSSS DYNFQDLLNNSQNQQNPFDESSCPDQFVSGLLPSSPPTDQLENLSLYQTTQYPSLSFS PNLEYGYGDFNGLNYLEVKNEECQVDFDPAYRGVDNVDKYLQRSFSSNSFEGKPGFSF QLPFDSLMESQNFQGQSFSMPENSFFAGQMRKNMRNAYTNPRSISTPSAIENSYMEEA PFKVGRYSAEERQERISKYKAKRNQRNFNKTIKYACRKTLADNRPRIRGRFARNDDTV EVPKAACSTRDEDEDGLWVLHSIPHGSMQALQEVEDETMARGSFMSSFSQTQYQHHHG CF" CDS complement(join(32290727..32290822,32290944..32291105, 32291281..32291457,32291570..32292169)) /locus_tag="TCM_016302" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zinc finger protein CONSTANS-LIKE 1, putative isoform 1" /protein_id="EOY24806.1" /db_xref="Phytozome:POPTR_0003s13050.1" /db_xref="TAIR:AT5G41380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWU0" /translation="MSCNLSVSNDSSVNRYIPEMVSTDTIDYPLLFDHPFSPFQDSSS DYNFQDLLNNSQNQQNPFDESSCPDQFVSGLLPSSPPTDQLENLSLYQTTQYPSLSFS PNLEYGYGDFNGLNYLEVKNEECQVDFDPAYRGVDNVDKYLQRSFSSNSFEGKPGFSF QLPFDSLMESQNFQGQSFSMPENSFFAGQMRKVCSTGDLENMRNAYTNPRSISTPSAI ENSYMEEAPFKVGRYSAEERQERISKYKAKRNQRNFNKTIKYACRKTLADNRPRIRGR FARNDDTVEVPKAACSTRDEDEDGLWVLHSIPHGSMQALQEVEDETMARGSFMSSFSQ TQYQHHHGCF" mobile_element complement(32293924..32294170) /note="source:scaffold_5_CACTA_0614 1849 2066" /mobile_element_type="transposon:TIR/CACTA" gene 32294823..32297683 /locus_tag="TCM_016303" /note="dbxref CacaoGD:Thecc1EG016303" mRNA join(32294823..32295301,32295422..32295443, 32295937..32295993,32296077..32296158,32296708..32296803, 32296893..32297017,32297114..32297132,32297235..32297683) /locus_tag="TCM_016303" /product="PLAC8 family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019394001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005294t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13070.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc693t1" CDS join(32295202..32295301,32295422..32295443, 32295937..32295993,32296077..32296158,32296708..32296803, 32296893..32297017,32297114..32297132,32297235..32297486) /locus_tag="TCM_016303" /note="paralog of Thecc1EG005294t1" /codon_start=1 /product="PLAC8 family protein" /protein_id="EOY24808.1" /db_xref="Phytozome:POPTR_0003s13070.1" /db_xref="TAIR:AT1G63830.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UCG9" /translation="MASQEYMDKMQIRQNYRNLWHTDLVRTIQRDPPYCCLAFWCGPC VSYMLRKRALYNDMSRYTCCAGYMPCSGRCGESKCPEFCLCTEVFLCFGNSVASTRFL LQDEFNIQTTKCDNCIIGFMFCLQQIACIFSIVAMIVGSDEIQEASQLLSCLADMVYC TVCACMQTQHKIEMDKRDGMFGPQPMAVPPVQQMSRIDQPIPPAAGYPPPAYGQAYPP QAPGYTAPGYPPAAYPPAQNPPAGYPPPGYYR" gene complement(32300124..32301148) /locus_tag="TCM_016304" /note="dbxref CacaoGD:Thecc1EG016304" mRNA complement(32300124..32301148) /locus_tag="TCM_016304" /product="RING-H2 zinc finger protein RHA1a, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005292t1" /inference="similar to AA sequence:ricco:30190.m011252" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11511t1" CDS complement(32300440..32301141) /locus_tag="TCM_016304" /note="dbxref ricco:30190.m011252; paralog of Thecc1EG005292t1" /codon_start=1 /product="RING-H2 zinc finger protein RHA1a, putative" /protein_id="EOY24809.1" /db_xref="TAIR:AT3G61460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7FMU7" /translation="MFLPISCLSLPLSHSLSLFLLHNTEPEQTKPKKQTQQTEKTHKR NTFFTHPSLSFKRKMGFPVGYSALLLPRLLLHTLSLLGYLRKFISTLFLYLGLPDFLE PDIIPWRDTVNTDVSNSASSSPTPRRIPVSALLIRELLPVVKFSDLVDPPDSCAVCLY DFEGQDEIRRLTNCRHIFHRSCLDRWMGYDQKTCPLCRTCFVPDDMQETFNERLWAAS GIPEFFGDYSQITAL" mobile_element complement(32302349..32302412) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3094 3159" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 32304026..32305603 /locus_tag="TCM_016305" /note="dbxref CacaoGD:Thecc1EG016305" mRNA join(32304026..32304538,32304710..32305603) /locus_tag="TCM_016305" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS join(32304216..32304538,32304710..32304899) /locus_tag="TCM_016305" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24810.1" /translation="MRIWQNICGSQHEWRGSDATPCSSSALLPILSDKYALYKPRQPL AHPYVGGNPTHPTEPRSISPVTTAFVSCLVVVSMPWSPNGNHKNLQYTYAYCSFICHN WPPCLCLYLAQLLERLEECVNTKGDKSRVLVDNWKANFRGETENPKAKQAWECNFRKA FWHLASLGTY" gene complement(32307312..32308953) /locus_tag="TCM_016306" /note="dbxref CacaoGD:Thecc1EG016306" mRNA complement(32307312..32308953) /locus_tag="TCM_016306" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4151t3_C1" CDS complement(32307605..32307952) /locus_tag="TCM_016306" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24811.1" /translation="MKIWQGQNDMFCIICKTKLLFHEYMERLMKFTSRNIAIKPQSRL CFASIIGEHICTYLYAWSFFLSFFLPSCLCEHQENAKSTYTNLSTNAPIAMRSCSGCK AGVAKISVERCRL" gene complement(32309999..32312664) /locus_tag="TCM_016307" /note="dbxref CacaoGD:Thecc1EG016307" mRNA complement(join(32309999..32310296,32311249..32311442, 32311580..32311736,32312123..32312223,32312339..32312664)) /locus_tag="TCM_016307" /product="Vacuolar ATP synthase subunit E1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m010783" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019663t1" /inference="similar to AA sequence:ricco:30190.m010783" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b015756t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g03471t00001" mRNA complement(join(32310038..32310296,32310745..32310844, 32311249..32311442,32311580..32311736,32312123..32312223, 32312339..32312509)) /locus_tag="TCM_016307" /product="Vacuolar ATP synthase subunit E1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010783" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019663t1" /inference="similar to AA sequence:ricco:30190.m010783" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03471t00001; inference alignment:Newbler:10:TSA:cgbaP2_g03471t00001" CDS complement(join(32310261..32310296,32310745..32310844, 32311249..32311442,32311580..32311736,32312123..32312223, 32312339..32312440)) /locus_tag="TCM_016307" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m010783; paralog of Thecc1EG019663t1" /codon_start=1 /product="Vacuolar ATP synthase subunit E1 isoform 1" /protein_id="EOY24812.1" /db_xref="TAIR:AT4G11150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39258" /translation="MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLV EAEKKKIRQEYEKKKKQVEIRKKIEYSMQLNASRIKVLQAQDDVVNSMKEAASKDLLN VSRDHHVYKNLLKDLIVQSLVRLKEPAVLLRCRKDDVHLVESVLDSAKEEYASKVNVH PPEIFIDHVHLPPGPSHHNAHGPFCSGGVVLASRDGKIVCENTLDARLDVAFRKKLPE IRKWLFSQAAA" CDS complement(join(32310296,32311249..32311442, 32311580..32311736,32312123..32312223,32312339..32312440)) /locus_tag="TCM_016307" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m010783; paralog of Thecc1EG019663t1" /codon_start=1 /product="Vacuolar ATP synthase subunit E1 isoform 2" /protein_id="EOY24813.1" /db_xref="TAIR:AT4G11150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39258" /translation="MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLV EAEKKKIRQEYEKKKKQVEIRKKIEYSMQLNASRIKVLQAQDDVVNSMKEAASKDLLN VSRDHHVYKNLLKDLIVQSLVRLKEPAVLLRCRKDDVHLVESVLDSAKEEYASKVNVH PPEIFIDHVHLPPGPSHHNAHGPF" mobile_element 32313044..32313197 /note="source:scaffold_7_CACTA_0795 2848 3006" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32314447..32314772 /note="source:scaffold_4_CACTA_0505 10623 10951" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32314759..32314988 /note="source:scaffold_7_CACTA_0779 12713 12903" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32314783..32315294) /note="source:scaffold_3_CACTA_0377 4718 5241" /mobile_element_type="transposon:TIR/CACTA" gene 32315817..32320117 /locus_tag="TCM_016308" /note="dbxref CacaoGD:Thecc1EG016308" mRNA join(32315817..32316043,32316141..32316204, 32316550..32316599,32316680..32316873,32317576..32317639, 32317716..32317788,32318167..32318287,32318685..32318772, 32318899..32318949,32319189..32319260,32319333..32319445, 32319768..32320117) /locus_tag="TCM_016308" /product="Galactosyltransferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015326t3" /inference="similar to AA sequence:Phytozome:POPTR_0003s13580.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1072t4_C2" CDS join(32315922..32316043,32316141..32316204, 32316550..32316599,32316680..32316873,32317576..32317639, 32317716..32317788,32318167..32318287,32318685..32318772, 32318899..32318949,32319189..32319260,32319333..32319445, 32319768..32319790) /locus_tag="TCM_016308" /note="paralog of Thecc1EG015326t3" /codon_start=1 /product="Galactosyltransferase family protein" /protein_id="EOY24814.1" /db_xref="Phytozome:POPTR_0003s13580.1" /db_xref="TAIR:AT5G53340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F27" /translation="MRSRGSSNRLSNSGGSAFHSRFSAMVLAMFATMATIYVAGRMWQ DAESRVYLIQELDERTGQGHSAISVDDTLKIIACREQQKKLSAVEMELAAARQEGFVS KQHLENDGTHSKKRLLAVIGIVTTFGRKKNRDAIRKAWMQSGAALKKLEGEKGIVVRF VIGKSANRGDSLDREIDNENSQTNDFIILNHVEAPEERSKKIKFFFVHAVESWDAEFY VKVNDDVYVNIDALGATLSAHMDKPRVYLGCMKSGEVFSEPTHKWYELDWWKFGDKKS YFRHASGEIYAISRVLAQFISINRSILRTYAHDDVSAGSWFIGLDVKHVDEGKFCCSS WSTGSICAAV" mobile_element complement(32316975..32317021) /note="source:scaffold_4_CACTA_0505 16322 16368" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32316985..32317037 /note="source:CACAO_M_E43428_F369_scaffold_5 1288 1339" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32320792..32321781) /locus_tag="TCM_016309" /note="dbxref CacaoGD:Thecc1EG016309" mRNA complement(join(32320792..32321030,32321113..32321781)) /locus_tag="TCM_016309" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.59 coverage" CDS complement(join(32320939..32321030,32321113..32321248)) /locus_tag="TCM_016309" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24815.1" /translation="MAAPKQGYIKFNVDGSAKGCFGPMRIGEILRNEFKELKINFSKS IVIILLLKVMQLTSLIELKNGLWRRGGCVNG" gene 32323077..32328179 /locus_tag="TCM_016311" /note="dbxref CacaoGD:Thecc1EG016311" mRNA join(32323077..32323536,32323715..32324888, 32325163..32325815,32325937..32326135,32327289..32327317) /locus_tag="TCM_016311" /product="BTB/POZ domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09710.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09710.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc799t8; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10121t2" mRNA join(32323558..32324906,32325163..32326147, 32327357..32327913) /locus_tag="TCM_016311" /product="BTB/POZ domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09710.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09710.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10121t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10121t2" mRNA join(32323812..32324906,32325163..32326147, 32327289..32328179) /locus_tag="TCM_016311" /product="BTB/POZ domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09710.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09710.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc820t6; alternateUTRof:Thecc1EG016311t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10121t2" mRNA join(32323812..32324906,32325163..32326135, 32327357..32328179) /locus_tag="TCM_016311" /product="BTB/POZ domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09710.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09710.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc820t5; alternateUTRof:Thecc1EG016311t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10121t2" mRNA join(32323812..32324888,32325163..32325815, 32325937..32326135,32327357..32328179) /locus_tag="TCM_016311" /product="BTB/POZ domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09710.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09710.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc820t8; alternateUTRof:Thecc1EG016311t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10121t2" CDS join(32323875..32324906,32325163..32326104) /locus_tag="TCM_016311" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="BTB/POZ domain-containing protein isoform 1" /protein_id="EOY24816.1" /db_xref="Phytozome:POPTR_0001s09710.1" /db_xref="TAIR:AT1G63850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUM2" /translation="MATATTTTTTKSISTKTSSAQLKVQVQPIKPKRRKCKETTISSS ASTAAPTTATTAATNSYSESGFSGVLTRKLDPPTIVSPDNTWCCPASKPLPTPPPPPP SPPLPPQARRGPDPCFADSISGFRIRYSPGSLSPVMDFTGGTTLSNGHSPSSFTKFNS ALTAGLLNPMSPPPPPDKTRSSPTLFEMMASEPDIHPRNQSQNQAQIQVPISAPRQNQ PPPVIDKQALTMQRISDLLSNRSPGNQFNDPGSSDIKLTLSSKDGINVSMNVHRQILV AHSRFFAVKLSDRWAKQQRNGSGGPYIVEIADCDDVEVYIETLRLMYCKDLRKKLMRE DVSKVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLAELRLENVGAGEV LKRVSVEVTNGTDEGGDNEEVLLKLLHVVLEGKDEKARREMKGLVSKMLRENSSQNDL RKESLYSACDGCLELLRHHFLRAASSDLQDVSQIARQADNLHWILDILIDRQIAEDFL KSWASQSELSDAHSKVPAVHRYEVSRVTARLFVGIGKGQLLASKEMRCLLLQTWLVPF YDDFGWMRRASKGLDRHLVEDGLSNTILTLPLAWQQEILLAWFDRFLNSGEDCPNIQR GFEVWWRRAFWRRSGEQEPPRQLQVTTATIENS" CDS join(32323875..32324906,32325163..32326104) /locus_tag="TCM_016311" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="BTB/POZ domain-containing protein isoform 1" /protein_id="EOY24817.1" /db_xref="Phytozome:POPTR_0001s09710.1" /db_xref="TAIR:AT1G63850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUM2" /translation="MATATTTTTTKSISTKTSSAQLKVQVQPIKPKRRKCKETTISSS ASTAAPTTATTAATNSYSESGFSGVLTRKLDPPTIVSPDNTWCCPASKPLPTPPPPPP SPPLPPQARRGPDPCFADSISGFRIRYSPGSLSPVMDFTGGTTLSNGHSPSSFTKFNS ALTAGLLNPMSPPPPPDKTRSSPTLFEMMASEPDIHPRNQSQNQAQIQVPISAPRQNQ PPPVIDKQALTMQRISDLLSNRSPGNQFNDPGSSDIKLTLSSKDGINVSMNVHRQILV AHSRFFAVKLSDRWAKQQRNGSGGPYIVEIADCDDVEVYIETLRLMYCKDLRKKLMRE DVSKVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLAELRLENVGAGEV LKRVSVEVTNGTDEGGDNEEVLLKLLHVVLEGKDEKARREMKGLVSKMLRENSSQNDL RKESLYSACDGCLELLRHHFLRAASSDLQDVSQIARQADNLHWILDILIDRQIAEDFL KSWASQSELSDAHSKVPAVHRYEVSRVTARLFVGIGKGQLLASKEMRCLLLQTWLVPF YDDFGWMRRASKGLDRHLVEDGLSNTILTLPLAWQQEILLAWFDRFLNSGEDCPNIQR GFEVWWRRAFWRRSGEQEPPRQLQVTTATIENS" CDS join(32323875..32324906,32325163..32326104) /locus_tag="TCM_016311" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="BTB/POZ domain-containing protein isoform 1" /protein_id="EOY24820.1" /db_xref="Phytozome:POPTR_0001s09710.1" /db_xref="TAIR:AT1G63850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUM2" /translation="MATATTTTTTKSISTKTSSAQLKVQVQPIKPKRRKCKETTISSS ASTAAPTTATTAATNSYSESGFSGVLTRKLDPPTIVSPDNTWCCPASKPLPTPPPPPP SPPLPPQARRGPDPCFADSISGFRIRYSPGSLSPVMDFTGGTTLSNGHSPSSFTKFNS ALTAGLLNPMSPPPPPDKTRSSPTLFEMMASEPDIHPRNQSQNQAQIQVPISAPRQNQ PPPVIDKQALTMQRISDLLSNRSPGNQFNDPGSSDIKLTLSSKDGINVSMNVHRQILV AHSRFFAVKLSDRWAKQQRNGSGGPYIVEIADCDDVEVYIETLRLMYCKDLRKKLMRE DVSKVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLAELRLENVGAGEV LKRVSVEVTNGTDEGGDNEEVLLKLLHVVLEGKDEKARREMKGLVSKMLRENSSQNDL RKESLYSACDGCLELLRHHFLRAASSDLQDVSQIARQADNLHWILDILIDRQIAEDFL KSWASQSELSDAHSKVPAVHRYEVSRVTARLFVGIGKGQLLASKEMRCLLLQTWLVPF YDDFGWMRRASKGLDRHLVEDGLSNTILTLPLAWQQEILLAWFDRFLNSGEDCPNIQR GFEVWWRRAFWRRSGEQEPPRQLQVTTATIENS" CDS join(32323875..32324888,32325163..32325815, 32325937..32325970) /locus_tag="TCM_016311" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="BTB/POZ domain-containing protein isoform 3" /protein_id="EOY24818.1" /db_xref="Phytozome:POPTR_0001s09710.1" /db_xref="TAIR:AT1G63850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUM2" /translation="MATATTTTTTKSISTKTSSAQLKVQVQPIKPKRRKCKETTISSS ASTAAPTTATTAATNSYSESGFSGVLTRKLDPPTIVSPDNTWCCPASKPLPTPPPPPP SPPLPPQARRGPDPCFADSISGFRIRYSPGSLSPVMDFTGGTTLSNGHSPSSFTKFNS ALTAGLLNPMSPPPPPDKTRSSPTLFEMMASEPDIHPRNQSQNQAQIQVPISAPRQNQ PPPVIDKQALTMQRISDLLSNRSPGNQFNDPGSSDIKLTLSSKDGINVSMNVHRQILV AHSRFFAVKLSDRWAKQQRNGSGGPYIVEIADCDDVEVYIETLRLMYCKDLRKKLMRE DVSKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLAELRLENVGAGEVLKRVSV EVTNGTDEGGDNEEVLLKLLHVVLEGKDEKARREMKGLVSKMLRENSSQNDLRKESLY SACDGCLELLRHHFLRAASSDLQDVSQIARQADNLHWILDILIDRQIAEDFLKSWASQ SELSDAHSKVPAVHRYEVSRVTARLFVGIGKGQLLASKEMRCLLLQTWKFCLLGLIDS " CDS join(32323875..32324888,32325163..32325815, 32325937..32325970) /locus_tag="TCM_016311" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="BTB/POZ domain-containing protein isoform 3" /protein_id="EOY24819.1" /db_xref="Phytozome:POPTR_0001s09710.1" /db_xref="TAIR:AT1G63850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUM2" /translation="MATATTTTTTKSISTKTSSAQLKVQVQPIKPKRRKCKETTISSS ASTAAPTTATTAATNSYSESGFSGVLTRKLDPPTIVSPDNTWCCPASKPLPTPPPPPP SPPLPPQARRGPDPCFADSISGFRIRYSPGSLSPVMDFTGGTTLSNGHSPSSFTKFNS ALTAGLLNPMSPPPPPDKTRSSPTLFEMMASEPDIHPRNQSQNQAQIQVPISAPRQNQ PPPVIDKQALTMQRISDLLSNRSPGNQFNDPGSSDIKLTLSSKDGINVSMNVHRQILV AHSRFFAVKLSDRWAKQQRNGSGGPYIVEIADCDDVEVYIETLRLMYCKDLRKKLMRE DVSKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLAELRLENVGAGEVLKRVSV EVTNGTDEGGDNEEVLLKLLHVVLEGKDEKARREMKGLVSKMLRENSSQNDLRKESLY SACDGCLELLRHHFLRAASSDLQDVSQIARQADNLHWILDILIDRQIAEDFLKSWASQ SELSDAHSKVPAVHRYEVSRVTARLFVGIGKGQLLASKEMRCLLLQTWKFCLLGLIDS " gene complement(32328351..32331258) /locus_tag="TCM_016313" /note="dbxref CacaoGD:Thecc1EG016313" mRNA complement(join(32328351..32329108,32329215..32329295, 32329404..32329617,32329694..32329813,32330247..32331258)) /locus_tag="TCM_016313" /product="Phosphoglycerate mutase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026521t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13110.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc335t2" CDS complement(join(32329009..32329108,32329215..32329295, 32329404..32329617,32329694..32329813,32330247..32330739)) /locus_tag="TCM_016313" /note="paralog of Thecc1EG026521t1" /codon_start=1 /product="Phosphoglycerate mutase family protein" /protein_id="EOY24821.1" /db_xref="Phytozome:POPTR_0003s13110.1" /db_xref="TAIR:AT3G05170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DF86" /translation="MATLTFTPSPASYLPLSQRKLAGLSPIQCLGTPKEAIRIPSSNG KAMFPEKGLLARAETSSPPTPRRIILVRHGQSEGNVDESAYTRVADPKISLTEKGKAE AEECGWRIREMIEKDGADDWKVYFYVSPYKRTLETLQHLGRAFERSRIAGMREEPRIR EQDFGNFQDREKMRVDKALRLRYGRFFYRFPEGESAADVYDRITGFRETLRADIDIGR FQPPGERSPNMNLIIVSHGLALRVFLMRWYKWTVEQFERLNNMGNGNIIVMEKGYGGR YSLLMHHTEEELREFGLTDEMLINQEWQNTARPGELNYDCPVVNSFFTHFEDEGCRTL Y" mobile_element complement(32332452..32332505) /note="source:CACAO_M_S_E20040_F4_scaffold_3 448 500" /mobile_element_type="retrotransposon:LTR/Copia" gene 32332453..32334457 /locus_tag="TCM_016314" /note="dbxref CacaoGD:Thecc1EG016314" mRNA join(32332453..32333299,32334187..32334457) /locus_tag="TCM_016314" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.20 coverage" CDS 32332823..32333035 /locus_tag="TCM_016314" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24822.1" /translation="METYHCITCHQLSLFVVLCLELQLYKVTMICSNRHLHSLSWLLH YHCRLQQREPSDVPVAAIASQEFDLD" mobile_element complement(32337153..32337219) /note="source:CACAO_PIF_E465_scaffold_115 5756 5826" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 32342713..32347786 /locus_tag="TCM_016315" /note="dbxref CacaoGD:Thecc1EG016315" mRNA join(32342713..32343006,32344288..32345315, 32345692..32346074,32346529..32346589,32346804..32347745) /locus_tag="TCM_016315" /product="POX family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011257" /inference="similar to AA sequence:Phytozome:POPTR_0003s13120.5" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:PASA:2:TSA:puevd3b015761t1a4; alternateUTRof:Thecc1EG016315t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10816t2" mRNA join(32342841..32343006,32343810..32344055, 32344282..32345315,32345692..32346074,32346529..32346589, 32346804..32347745) /locus_tag="TCM_016315" /product="POX family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011257" /inference="similar to AA sequence:Phytozome:POPTR_0003s13120.5" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10816t2" mobile_element 32343503..32343595 /note="source:scaffold_5_CACTA_0596 1746 1838" /mobile_element_type="transposon:TIR/CACTA" mRNA join(32343698..32344055,32344288..32345315, 32345692..32346074,32346529..32346589,32346804..32347786) /locus_tag="TCM_016315" /product="POX family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011257" /inference="similar to AA sequence:Phytozome:POPTR_0003s13120.5" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:PASA:2:TSA:puevd3b015761t1a2; alternateUTRof:Thecc1EG016315t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10816t2" mRNA join(32343698..32345315,32345692..32346074, 32346529..32346589,32346804..32347729) /locus_tag="TCM_016315" /product="POX family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011257" /inference="similar to AA sequence:Phytozome:POPTR_0003s13120.5" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01371t00002; alternateUTRof:Thecc1EG016315t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10816t2" mRNA join(32343698..32344055,32344282..32345315, 32345692..32346074,32346529..32346589,32346804..32347729) /locus_tag="TCM_016315" /product="POX family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011257" /inference="similar to AA sequence:Phytozome:POPTR_0003s13120.5" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01371t00001; alternateUTRof:Thecc1EG016315t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10816t2" CDS join(32344386..32345315,32345692..32346074, 32346529..32346589,32346804..32347415) /locus_tag="TCM_016315" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="POX family protein isoform 1" /protein_id="EOY24823.1" /db_xref="Phytozome:POPTR_0003s13120.5" /db_xref="TAIR:AT5G41410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKE5" /translation="MARELCEDKSRNMVSSTGFCYSDVSSGNATMQTHLVNQIQSFES NSEIFNLTTGMEMIGFSKNLQQQGDSNTVMWKGFFNKHGTNPGPSSSKTISESTSDFY QHEFHKPEFTTGISETSTENLIVGPESAPWQENRLLVDDSSLRCVFPCEGNERPSQGL SLSLSSSNPTSIGLQSFELRQTSHSNHDQQDDMRFIGSSSRDGFFGKPVNIQHQQQMI QDGFLGKAANLHHQGLFQLRSSKYLGPAQELLNEFCSLGTKQIDASKQKQIHKTKQWD DENGASSSRKQALYSLDFIELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAG TGAASVYSALASKAMSRHFRCLRDGIVSQIQATRKAMGEKDPVAPGTTRGETPRLRVL DQALRQQKAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILAR QTGLSRSQVSNWFINARVRLWKPMVEEMYLEEIKEHENNMASSDGATDGDDNGRPNQN PPTDQKPTPDQLVRVDSECLSSIVTNPDKNDAKSAKTLQNQHSHQPQNFGTYGAMELD FSSYSHHTAGGVSYGSDNANQNFNGGGVSLTLGLQQHGGTGVSLAFSPASQSPLFYPR DHIEDCQQVQYSLLDGEGQHLPYRNLMGAQLLHDLAG" CDS join(32344386..32345315,32345692..32346074, 32346529..32346589,32346804..32347415) /locus_tag="TCM_016315" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="POX family protein isoform 1" /protein_id="EOY24824.1" /db_xref="Phytozome:POPTR_0003s13120.5" /db_xref="TAIR:AT5G41410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKE5" /translation="MARELCEDKSRNMVSSTGFCYSDVSSGNATMQTHLVNQIQSFES NSEIFNLTTGMEMIGFSKNLQQQGDSNTVMWKGFFNKHGTNPGPSSSKTISESTSDFY QHEFHKPEFTTGISETSTENLIVGPESAPWQENRLLVDDSSLRCVFPCEGNERPSQGL SLSLSSSNPTSIGLQSFELRQTSHSNHDQQDDMRFIGSSSRDGFFGKPVNIQHQQQMI QDGFLGKAANLHHQGLFQLRSSKYLGPAQELLNEFCSLGTKQIDASKQKQIHKTKQWD DENGASSSRKQALYSLDFIELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAG TGAASVYSALASKAMSRHFRCLRDGIVSQIQATRKAMGEKDPVAPGTTRGETPRLRVL DQALRQQKAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILAR QTGLSRSQVSNWFINARVRLWKPMVEEMYLEEIKEHENNMASSDGATDGDDNGRPNQN PPTDQKPTPDQLVRVDSECLSSIVTNPDKNDAKSAKTLQNQHSHQPQNFGTYGAMELD FSSYSHHTAGGVSYGSDNANQNFNGGGVSLTLGLQQHGGTGVSLAFSPASQSPLFYPR DHIEDCQQVQYSLLDGEGQHLPYRNLMGAQLLHDLAG" CDS join(32344386..32345315,32345692..32346074, 32346529..32346589,32346804..32347415) /locus_tag="TCM_016315" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="POX family protein isoform 1" /protein_id="EOY24825.1" /db_xref="Phytozome:POPTR_0003s13120.5" /db_xref="TAIR:AT5G41410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKE5" /translation="MARELCEDKSRNMVSSTGFCYSDVSSGNATMQTHLVNQIQSFES NSEIFNLTTGMEMIGFSKNLQQQGDSNTVMWKGFFNKHGTNPGPSSSKTISESTSDFY QHEFHKPEFTTGISETSTENLIVGPESAPWQENRLLVDDSSLRCVFPCEGNERPSQGL SLSLSSSNPTSIGLQSFELRQTSHSNHDQQDDMRFIGSSSRDGFFGKPVNIQHQQQMI QDGFLGKAANLHHQGLFQLRSSKYLGPAQELLNEFCSLGTKQIDASKQKQIHKTKQWD DENGASSSRKQALYSLDFIELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAG TGAASVYSALASKAMSRHFRCLRDGIVSQIQATRKAMGEKDPVAPGTTRGETPRLRVL DQALRQQKAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILAR QTGLSRSQVSNWFINARVRLWKPMVEEMYLEEIKEHENNMASSDGATDGDDNGRPNQN PPTDQKPTPDQLVRVDSECLSSIVTNPDKNDAKSAKTLQNQHSHQPQNFGTYGAMELD FSSYSHHTAGGVSYGSDNANQNFNGGGVSLTLGLQQHGGTGVSLAFSPASQSPLFYPR DHIEDCQQVQYSLLDGEGQHLPYRNLMGAQLLHDLAG" CDS join(32344386..32345315,32345692..32346074, 32346529..32346589,32346804..32347415) /locus_tag="TCM_016315" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="POX family protein isoform 1" /protein_id="EOY24826.1" /db_xref="Phytozome:POPTR_0003s13120.5" /db_xref="TAIR:AT5G41410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKE5" /translation="MARELCEDKSRNMVSSTGFCYSDVSSGNATMQTHLVNQIQSFES NSEIFNLTTGMEMIGFSKNLQQQGDSNTVMWKGFFNKHGTNPGPSSSKTISESTSDFY QHEFHKPEFTTGISETSTENLIVGPESAPWQENRLLVDDSSLRCVFPCEGNERPSQGL SLSLSSSNPTSIGLQSFELRQTSHSNHDQQDDMRFIGSSSRDGFFGKPVNIQHQQQMI QDGFLGKAANLHHQGLFQLRSSKYLGPAQELLNEFCSLGTKQIDASKQKQIHKTKQWD DENGASSSRKQALYSLDFIELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAG TGAASVYSALASKAMSRHFRCLRDGIVSQIQATRKAMGEKDPVAPGTTRGETPRLRVL DQALRQQKAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILAR QTGLSRSQVSNWFINARVRLWKPMVEEMYLEEIKEHENNMASSDGATDGDDNGRPNQN PPTDQKPTPDQLVRVDSECLSSIVTNPDKNDAKSAKTLQNQHSHQPQNFGTYGAMELD FSSYSHHTAGGVSYGSDNANQNFNGGGVSLTLGLQQHGGTGVSLAFSPASQSPLFYPR DHIEDCQQVQYSLLDGEGQHLPYRNLMGAQLLHDLAG" CDS join(32344386..32345315,32345692..32346074, 32346529..32346589,32346804..32347415) /locus_tag="TCM_016315" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="POX family protein isoform 1" /protein_id="EOY24827.1" /db_xref="Phytozome:POPTR_0003s13120.5" /db_xref="TAIR:AT5G41410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKE5" /translation="MARELCEDKSRNMVSSTGFCYSDVSSGNATMQTHLVNQIQSFES NSEIFNLTTGMEMIGFSKNLQQQGDSNTVMWKGFFNKHGTNPGPSSSKTISESTSDFY QHEFHKPEFTTGISETSTENLIVGPESAPWQENRLLVDDSSLRCVFPCEGNERPSQGL SLSLSSSNPTSIGLQSFELRQTSHSNHDQQDDMRFIGSSSRDGFFGKPVNIQHQQQMI QDGFLGKAANLHHQGLFQLRSSKYLGPAQELLNEFCSLGTKQIDASKQKQIHKTKQWD DENGASSSRKQALYSLDFIELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAG TGAASVYSALASKAMSRHFRCLRDGIVSQIQATRKAMGEKDPVAPGTTRGETPRLRVL DQALRQQKAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILAR QTGLSRSQVSNWFINARVRLWKPMVEEMYLEEIKEHENNMASSDGATDGDDNGRPNQN PPTDQKPTPDQLVRVDSECLSSIVTNPDKNDAKSAKTLQNQHSHQPQNFGTYGAMELD FSSYSHHTAGGVSYGSDNANQNFNGGGVSLTLGLQQHGGTGVSLAFSPASQSPLFYPR DHIEDCQQVQYSLLDGEGQHLPYRNLMGAQLLHDLAG" gene 32347985..32351087 /locus_tag="TCM_016316" /note="dbxref CacaoGD:Thecc1EG016316" mRNA join(32347985..32348519,32348976..32349900, 32350935..32351087) /locus_tag="TCM_016316" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.56 coverage" CDS join(32349539..32349900,32350935..32351061) /locus_tag="TCM_016316" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24828.1" /translation="MHHFLNYLAIYVYIFIYFEPMITIDKGVNLCKSNRSFSHYVPSS FNLSANLVYIIFLLKVLQQEILCELCSSHCACAICHVGLNNLLILLFIKLFLFPPFCP IIVDKLLPKHCTTGESALIYKRDKFTIIHIYFYFDILNKITRRKIFIYKLKIYSLIKE NK" gene complement(32351090..32352910) /locus_tag="TCM_016317" /note="dbxref CacaoGD:Thecc1EG016317" mRNA complement(join(32351090..32352006,32352324..32352910)) /locus_tag="TCM_016317" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage" CDS complement(32351220..32351543) /locus_tag="TCM_016317" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24829.1" /translation="MKAFYFGSIANQIKFSGMIRPIGLKKSVGAIPSCNGNERAQSLM TSFNDKVTRRQNHGTDRREDCGEVPPTCRLLDSMDRGGYRKGNVVDRAGSTVGPPQIK SSNGS" gene complement(32353081..32356960) /locus_tag="TCM_016318" /note="dbxref CacaoGD:Thecc1EG016318" mRNA complement(join(32353081..32353580,32353820..32354362, 32355451..32356960)) /locus_tag="TCM_016318" /product="Beta-1,3-glucosyltransferase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005286t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13130.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05024t00001" CDS complement(join(32353479..32353580,32353820..32354362, 32355451..32356431)) /locus_tag="TCM_016318" /note="paralog of Thecc1EG005286t1" /codon_start=1 /product="Beta-1,3-glucosyltransferase" /protein_id="EOY24830.1" /db_xref="Phytozome:POPTR_0003s13130.1" /db_xref="TAIR:AT4G23490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0S2" /translation="MKDSKKDSEKVVWDQIQMRSASGNPLVPGPSARPIPKLMVWLIL FVSVTYVMYTLKLLATSAQQTCDDSPFTATLHRSSHFPNKTSLTSPHLILNQTAVTTT RHPHRDVREKPVVVQMQRTPPKPNLTEIHDVVFGIAASSKLWQQRKEYIKIWYKPNQM RGVVWLDDRVKYSPEDKGTLPPVRVSSDTSNFAYTNRQGHRSAIRISRIVTETLRLKM DYVRWFVMGDDDTVFITDNLVRILRKYDHTQYYYIGSLSESHIQNIFFSYGMAYGGGG FAISYPLAKALAKMQDRCIQRYPGLYGSDDRMQACMAELGVPLTKELGFHQYDVYGNL FGLLAAHPVTPLASLHHLDVVEPIFPNVTRVQALQRLMLPSKLDSAGIMQQSICYDKT KSWTISVSWGFAVQIFRGIFSPREMEMPSRTFLNWYRRADYTAYAFNTRPVSRNPCQK PFVFYMSRVRMDSELNQTVSEYERHRVPHPPCRWKMADPAELDMVIVNKKPDPHLWDR SPRRNCCRVMESKEQGTMVVNVGVCKDGEVSEI" misc_feature complement(join(32354336..32355169,32355451..32355478)) /locus_tag="TCM_016318" /note="Gene fragment of Thecc1EG016318t1; dbxref gnl|CacaoGD|Thecc1EG016318t1; quality class is mediumpartial-partof is thecc1eg016318t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.12 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1097t4; dbxref CacaoGD:Thecc1EG016319t1" gene complement(32357123..32357908) /locus_tag="TCM_016320" /note="dbxref CacaoGD:Thecc1EG016320" mRNA complement(32357123..32357908) /locus_tag="TCM_016320" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(32357153..32357515) /locus_tag="TCM_016320" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24831.1" /translation="MQKIQGKERKEKELPKLGSDLFLLSLFGISIIFFPSYQQAGGIP ITQKHKTKQRKFQKTKPLNAYCWLPLQINPIFVFVLHLALRFLWLEIAAKSLFWNSSS PFLSDQQFSITKNIGQER" mobile_element 32361402..32361865 /note="source:CACAO_on_S_E390_scaffold_9 2390 2850" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(32361935..32362211) /note="source:scaffold_2_CACTA_0239 2637 2932" /mobile_element_type="transposon:TIR/CACTA" gene 32362286..32365800 /locus_tag="TCM_016321" /note="dbxref CacaoGD:Thecc1EG016321" mRNA 32362286..32365800 /locus_tag="TCM_016321" /product="Pentatricopeptide repeat superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019401001" /inference="similar to AA sequence:Phytozome:GSVIVT01019401001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1525t1" CDS 32362483..32364918 /locus_tag="TCM_016321" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative" /protein_id="EOY24832.1" /db_xref="Phytozome:GSVIVT01019401001" /db_xref="TAIR:AT4G13650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKE3" /translation="MKRLTLILSRHEPSIKALITQNLHPQALRNSLSYHFPLLTDQIY SHFIKSGHSLNPFLCSTLVSHFSKHADFSRALSFFLDTPKPDTVSFNSLISGFARSGR TGPVFELFNGLRQLGLKPDVFTLSGLVKGCERLEENEIVHGVCLTLGFGNGAFVVSGL IENYAKSENLVSAEKCFRECLDVDNVVFTAMICGCFWNGEFDKGRDFFVEMRDLGFEL NEFSLTGVISGLFDEKEGQQVHGIGLKLGFLFGGSLHFNNAVMGMYSRCGSKTEAVKM FDEITDPDIVSWTERIGAAFDGLEAFGLFTCLQRNGLGVNEYTIINVLSAVAGEEMLS LGKQIQAVCQKEGLLKVVCVGNAFISLYGKCGEMDDARRIFDDMVSPDSVSWNSLIAG YLDNGFFSLALEMFSNMRDFNVEVNCYTLASILEAVSDSNSLHLGMQIHSYMVKCGFM FDNYIMSCLITTYGRCGTTDESRRVFSEINNISVMHLNAMLSTLVNADCHVDSLDFFR NTVGSILEVDSKTFSIILKACSAMTDLEQGRGIHSLALKSGFHHDCFVETAVIDLYCK CGSIGDAEKAFRYASMDNLAAWNAMITGYAQHGCYSEAFELYDKMTECGIKPDEITYL GVLTSCCHTGLVLEAQYYMNSMVECHGLIPHLEHYACMIDLLGRVGLLEDAKRTIDQM PIGPDARIWQILLSACSIHGNVDMGRIAASKLLELQPNNESAYVLLSNLCASAGMWNA VRKLRREMKEKLLCKEPGSSWIQVKGCMHHFFADNLLHPEHKEIFLELTKLYEHMQAS QIVEHDGTFLWDL" gene 32367827..32369842 /locus_tag="TCM_016322" /note="dbxref CacaoGD:Thecc1EG016322" mRNA join(32367827..32368264,32368346..32368460, 32368544..32368625,32368709..32368760,32368932..32368986, 32369084..32369207,32369308..32369842) /locus_tag="TCM_016322" /product="Nuclear transport factor 2 family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene31821" /inference="similar to AA sequence:Phytozome:POPTR_0003s13140.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10783t1" CDS join(32367884..32368264,32368346..32368460, 32368544..32368625,32368709..32368760,32368932..32368986, 32369084..32369207,32369308..32369587) /locus_tag="TCM_016322" /codon_start=1 /product="Nuclear transport factor 2 family protein, putative" /protein_id="EOY24833.1" /db_xref="Phytozome:POPTR_0003s13140.1" /db_xref="TAIR:AT5G41470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWU7" /translation="MAVAVNFSAQALRQRTCHRAMAGLPFDPLPFQRSCQLECQKRMK EQPHRIAIKRQEKNKKTNNRGVSSIMSSNNDSDLIFGPPSASDTIKHFYMCINEKNLK KLGDYISEDCYIEDCSFFNPFNGKKEVMHFFNLLTRGMGQNVKFVIEHICEGDGFTAG VNWHLEWKQRQVPFTRGCSFYECSEEGEKLVIKKAMIVIESPVKPGGMVLVLLKNVTT IFDEFPRAAEWFLKRPHVILQSVLKIYAIFFAPFVNPLVASYVKVWEFMARFNGFTNT SQLSSPSRRDHVSKRERATNGPRRGGCGGGLLKATMGLVWSLLTISPFSESLFSDFLG VDAATVPGDDYMLICSQVTDCLQEYSPK" gene complement(32372248..32374377) /locus_tag="TCM_016325" /note="dbxref CacaoGD:Thecc1EG016325" mRNA complement(join(32372248..32372486,32372611..32372667, 32372774..32372899,32373063..32373197,32373343..32373414, 32373505..32373564,32373710..32374377)) /locus_tag="TCM_016325" /product="Beta-hydroxylase 1, 1,B1,chy1,BCH1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028864001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015247t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019403001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2030t2" CDS complement(join(32372406..32372486,32372611..32372667, 32372774..32372899,32373063..32373197,32373343..32373414, 32373505..32373564,32373710..32374129)) /locus_tag="TCM_016325" /note="paralog of Thecc1EG015247t1" /codon_start=1 /product="Beta-hydroxylase 1, 1,B1,chy1,BCH1" /protein_id="EOY24834.1" /db_xref="Phytozome:GSVIVT01019403001" /db_xref="TAIR:AT4G25700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SZZ8" /translation="MATGSLLAASSTVIYQFGRSTALTTKPNSLAVGLSVLARDTMLQ RKGSHILRKKNCLNIFMVMQQTRNENENEAIEKSDTEKISDSIKGYNHVTLSRVEERL ARKKLERTTYLLAATLSSLGISAMAIMAVYYRFSWQMEGGEVPLLELAGTFALSVGAA VGMEFWARWAHRALWHASLWHMHESHHRPREGPFELNDVFAIINAAPAIALLLYGFLN RGLFPGLCFGAGLGITVFGMAYMFVHDGLVHRRFPVGPIAHVPYLRKVAAAHQLHHAD KFQGVPYGLFLGPQELEEVGGMEELEKEIKRRTKLSKNIP" mobile_element 32372468..32372572 /note="source:CACAO_M_E43482_F345_scaffold_5 1161 1246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32374708..32374844 /note="source:scaffold_1_CACTA_0032 2357 2491" /mobile_element_type="transposon:TIR/CACTA" gene 32380571..32381085 /locus_tag="TCM_016326" /note="dbxref CacaoGD:Thecc1EG016326" mRNA join(32380571..32380852,32380935..32381085) /locus_tag="TCM_016326" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13150.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015248t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09780.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g18043t00001" CDS join(32380616..32380852,32380935..32381009) /locus_tag="TCM_016326" /note="paralog of Thecc1EG015248t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24835.1" /db_xref="Phytozome:POPTR_0001s09780.1" /translation="MSRGGSYGGGQSSLGYLFGADEQPSAPAVTPPIQPPYGIDTTPE TPPAPNKLRSEKRTEKNVNNNYHRAQGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGD K" gene 32381553..32389456 /locus_tag="TCM_016327" /note="dbxref CacaoGD:Thecc1EG016327" mRNA join(32381553..32382032,32385888..32386044, 32386283..32386621,32387327..32387447,32387533..32387707, 32387792..32387862,32388015..32389006) /locus_tag="TCM_016327" /product="Pectin lyase-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g37490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005281t2" /inference="similar to AA sequence:Phytozome:Glyma05g37490.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02498t00001" mobile_element 32382467..32382598 /note="source:CACAO_M_E59539_F98_scaffold_9 2040 2183" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(32385640..32386044,32386283..32386621, 32387327..32387447,32387533..32387707,32387792..32387862, 32388015..32389456) /locus_tag="TCM_016327" /product="Pectin lyase-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g37490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005281t2" /inference="similar to AA sequence:Phytozome:Glyma05g37490.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc357t4_C1; alternateUTRof:Thecc1EG016327t1; inference alignment:Newbler:10:TSA:cgbaP1_g02498t00001" CDS join(32386015..32386044,32386283..32386621, 32387327..32387447,32387533..32387707,32387792..32387862, 32388015..32388682) /locus_tag="TCM_016327" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005281t2" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 1" /protein_id="EOY24836.1" /db_xref="Phytozome:Glyma05g37490.1" /db_xref="TAIR:AT4G23500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKD8" /translation="MWTTPRRNLQVLDTLVLLGLVLVLINVNGVESRTVRILDSFGYP VTGCSRKYSASLADFGGVGDGVSSNTKAFQAAIDNLSQYASDGGSLLFVPPGKWLTGS FNLTSHFTLYLHKDATLLASQDESEWAVIDPLPSYGRGRDAVGGRYISLIFGTNLTDV VVTGDNGTIHGQGTTWWDKFHKGELKYTRPYLIEIMYSDQVQISSLTLMDSPSWNVHP IYSSNVVVQGLTIVAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGI KFAMPTKQLVIRRLTCISPFSAVIALGSEMSGGIEDVRAEDITGINSESAVRIKTAVG RGNYVKDIYVRGMTMKTMKMVFWMAGNYGSHPDNDYDPNAIPVIQNINFRDVVAENVT MAARLEGIPGHPFTGICISNATIGLTKKPKKIQWNCTEIAGVSSDVTPPPCNLLTDQG PANACDFPEDSFPSVKL" CDS join(32386015..32386044,32386283..32386621, 32387327..32387447,32387533..32387707,32387792..32387862, 32388015..32388682) /locus_tag="TCM_016327" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005281t2" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 1" /protein_id="EOY24837.1" /db_xref="Phytozome:Glyma05g37490.1" /db_xref="TAIR:AT4G23500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKD8" /translation="MWTTPRRNLQVLDTLVLLGLVLVLINVNGVESRTVRILDSFGYP VTGCSRKYSASLADFGGVGDGVSSNTKAFQAAIDNLSQYASDGGSLLFVPPGKWLTGS FNLTSHFTLYLHKDATLLASQDESEWAVIDPLPSYGRGRDAVGGRYISLIFGTNLTDV VVTGDNGTIHGQGTTWWDKFHKGELKYTRPYLIEIMYSDQVQISSLTLMDSPSWNVHP IYSSNVVVQGLTIVAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGI KFAMPTKQLVIRRLTCISPFSAVIALGSEMSGGIEDVRAEDITGINSESAVRIKTAVG RGNYVKDIYVRGMTMKTMKMVFWMAGNYGSHPDNDYDPNAIPVIQNINFRDVVAENVT MAARLEGIPGHPFTGICISNATIGLTKKPKKIQWNCTEIAGVSSDVTPPPCNLLTDQG PANACDFPEDSFPSVKL" gene complement(32389009..32393572) /locus_tag="TCM_016328" /note="dbxref CacaoGD:Thecc1EG016328" mRNA complement(join(32389009..32389456,32389559..32389742, 32390386..32390718,32391414..32391551,32392218..32392347, 32393139..32393572)) /locus_tag="TCM_016328" /product="MAP kinase 4" /inference="alignment:exonerate- protein:2:ricco:30190.m011265" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005280t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019406001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06764t00001" CDS complement(join(32389284..32389456,32389559..32389742, 32390386..32390718,32391414..32391551,32392218..32392347, 32393139..32393305)) /locus_tag="TCM_016328" /note="paralog of Thecc1EG005280t1" /codon_start=1 /product="MAP kinase 4" /protein_id="EOY24838.1" /db_xref="Phytozome:GSVIVT01019406001" /db_xref="TAIR:AT4G01370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYQ5" /translation="MASTKESSSEGSNIKGVPTHGGKYVQYNVYGNLFEVSSKYVPPI RPIGRGAYGIVCAAVNSETREEVAIKKIGNAFDNRIDAKRTLREIKLLRHMDHENVIA MKDIVRPPKKETFNDVYIVYELMDTDLHQIIRSEQPLTDDHCQYFLYQLLRGLKYVHS ANVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSE YTAAIDIWSVGCILGEIMTREPLFPGKDYVHQLRLITELIGSPDDASLGFLRSDNARR YVRQLPQCRKQQFSARFPNMSAVAVDLLEKMLVFDPNKRITVDEALCHPYLVSLHDTN DEPVCPRPFSFDFEQSSCTEDHSKELIWRETVKFNPDPVN" gene 32396253..32399517 /locus_tag="TCM_016330" /note="dbxref CacaoGD:Thecc1EG016330" mRNA join(32396253..32396674,32397090..32397231, 32397349..32397629,32397718..32399517) /locus_tag="TCM_016330" /product="Heat shock protein 90.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s01160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015252t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s01160.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04391t00001" CDS join(32396534..32396674,32397090..32397231, 32397349..32397629,32397718..32399271) /locus_tag="TCM_016330" /note="paralog of Thecc1EG015252t1" /codon_start=1 /product="Heat shock protein 90.1" /protein_id="EOY24839.1" /db_xref="Phytozome:POPTR_0017s01160.1" /db_xref="TAIR:AT5G52640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5KA88" /translation="MADVHMGSESETFAFQAEINQLLSLIINTFYSNKEIFLRELISN ASDALDKIRFESLTDKSKLDAQPELFIRIIPDKINKTLSIVDSGIGMTKADLVNNLGT IARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAG GSFTVTRDVSGEPLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEK TIDKEVSDDEDEDAKKEEEGDVEDVDEDKEKKSKKKKVKEVTHEWQLINKQKPIWLRK PEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKL NNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSDDLPLNISREMLQQNKILKVIRKNL VKKCIEMFFEIAENKEDYTKFYEAFSKNIKLGIHEDSQNRAKLADLLRYYSTKSGDEM TSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLEKLKKRGYEVLFLVEAIDEYAVGQ LKEYDGKKLVSATKEGLKLDEESEEEKKEKEEKKKSFENLCKTIKEILGDRVEKVVVS DRIVDSPCCLVTGEYGWTANMERIMKAQALRDNSMSAYMSSKKTMEINPDNGIMEELR KRVEVDKNDKSVKDLVLLLFETALLTSGFSLDDPNTFAARIHRMLKLGLSIDEDETAA ADDIDMPSLEEESNEESKMEEVD" gene 32399578..32402359 /locus_tag="TCM_016331" /note="dbxref CacaoGD:Thecc1EG016331" mRNA 32399578..32402359 /locus_tag="TCM_016331" /product="Tetratricopeptide repeat superfamily protein, putative" /inference="similar to AA sequence:Phytozome:GSVIVT01019408001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1495t7" CDS 32399607..32401763 /locus_tag="TCM_016331" /codon_start=1 /product="Tetratricopeptide repeat superfamily protein, putative" /protein_id="EOY24840.1" /db_xref="Phytozome:GSVIVT01019408001" /db_xref="TAIR:AT4G21300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TV57" /translation="MLTLQLFPLLPTYSAPFQLPKQKITTKEPRNNNPVQFRKSLSSQ NLSSDIAAPDSVSTVHALKSCTASRSLELGSCIHGTVLKSGLCTNVFVNNSLLDMYMK CGSTEEARKLFDHMPERNVASWTSMISGYCHNGLADEGISTFVQMLENEDPNEFTLAA ALQAVAQKGNFRFLSVLHSYIVKSRFSVDSFLQNSLIGAFAKSGGLVDAIKLLERFSS RDVVSWTSVISAYVLHGLMQEALLVFFRMQDDGVVPNEVTILSILHACSFIGGQRILQ WVHGLVSKLGWCRHELVLNSVAEMYLTNGYFRQGIQLFSEFCFDGEGQYFSPETMATL LQGCGHIHYLKFGKQLHGYLIKHGFSSCIVENSLIDMYAENQKSDSAFQVFARMNVRD IISWNTLITCLVKNGEFREALMLLKDVHNNHGGEMVRPDVITMLASIQACSNLSSFIP GQLIHGYITKAGLICDIFIRNALIDMYGRSGRLDLAEKVFEEMPTKDLGSWNSLIAAY GINGNGRPALHAFTELSKSSPHNPNAITFTNILSACSHAGLVEEGYEIFNRMRREYGV EPSMEHFVCVVDLLGRSGKLEEAEDFIKEMPVTPANDVWCALLGACGFHGNITIAERV AKKLCVLDPEGKVWRVALSNIYASRGQWDNAAKVRAQLRQVEGVKKERGWSTVEVEGE MFRFMVNDTRHPESKLIYAILSGMMKHVRENAIDRL" gene complement(32401897..32409081) /locus_tag="TCM_016332" /note="dbxref CacaoGD:Thecc1EG016332" mRNA complement(join(32401897..32402344,32403531..32403579, 32403673..32403770,32407339..32407860,32408476..32408605, 32408720..32409081)) /locus_tag="TCM_016332" /product="Myb domain protein 103" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13190.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019410001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01619t00001" CDS complement(join(32402275..32402344,32403531..32403579, 32403673..32403770,32407339..32407860,32408476..32408605, 32408720..32408852)) /locus_tag="TCM_016332" /codon_start=1 /product="Myb domain protein 103" /protein_id="EOY24841.1" /db_xref="Phytozome:GSVIVT01019410001" /db_xref="TAIR:AT1G63910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TV59" /translation="MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKA GLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDN EIKNYWNSWIKKKIRKPSAPPTNTAPSTEHSQINYASNQLDQLVNQDLTARAPATQET LFSSPAPLFMFDTSPLDGMQDGNVRGELFHASANLNTETWNLNQHQVQAFPPSTSFTA GMDTNYLPPLVENMENMVPIEVQSCSMDEEGEMTLECLQRQQQEVSLFHAIRESRGKQ PPFFADFLRCRLLSHRNHDHLRKKPARDLQVPIPRPAFGRGGGGYGGAGPAGGAGLP" mobile_element 32404857..32404906 /note="source:scaffold_5_CACTA_0586 1617 1666" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32407780..32407863) /note="source:scaffold_3_CACTA_0395 938 1021" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32409466..32409485) /note="source:CACAO_M_S_E98851_F233_scaffold_8 1345 1374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32409486..32409538) /note="source:CACAO_PIF_E119_scaffold_3 2595 2647" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 32409489..32409545 /note="source:CACAO_M_E53565_F369_scaffold_8 1239 1295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32409539..32409557) /note="source:CACAO_M_S_E98851_F233_scaffold_8 1313 1344" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32413980..32414398 /note="source:CACAO_MITE59_scaffold_3 1 419" /mobile_element_type="transposon:TIR/MITE" gene 32418129..32419779 /locus_tag="TCM_016333" /note="dbxref CacaoGD:Thecc1EG016333" mRNA 32418129..32419779 /locus_tag="TCM_016333" /product="hypothetical protein" /inference="alignment:exonerate-protein:2:frave:gene31837" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035619t1" /inference="similar to AA sequence:ricco:30190.m011269" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10131t1" CDS 32418188..32419354 /locus_tag="TCM_016333" /note="dbxref ricco:30190.m011269; paralog of Thecc1EG035619t1; From the Czech 'roh' meaning 'corner'" /codon_start=1 /product="hypothetical protein" /protein_id="EOY24842.1" /db_xref="TAIR:AT1G63930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAK4" /translation="MPATEYPGSFLGRISIRRNQVIAMDGNHEQELEDLELFQKHVSD RFTELLSPPDDAPVEAPLSIPWLRKLLDVFLCCEAEFKAILLMGRDPSQISKPPLDRL IPELLDRAVKALDVCNAVTNGVDSVRHCQRLAEIAVSALNQKPIGDGQARRARKALNS LMSAMNLDEKEGGSTKTTERSWSFGRRGGNKDRAPGQFRPLSWQVATNWSAAKQIQAM TTNLVAPRGGEASGLASPVYIMSVVMVFVMWALVAAIPCQERSGLATHFPVPKQLSWA HSMIGLQEKIGDEWKKKEKKGMAGLLEEMQKMEKLGQSLIEFTDSFQFPGETEKLEEA AAQVAELAETCRRMEEGLVPLQMQIREVFHRIVRSRTEFLDVLDQGGKSSAPLV" gene 32421321..32429036 /locus_tag="TCM_016334" /note="dbxref CacaoGD:Thecc1EG016334" mRNA join(32421321..32421568,32421693..32421870, 32421987..32422086,32422193..32422270,32422592..32422663, 32422952..32423070,32423192..32423276,32423379..32423468, 32423769..32423870,32424079..32424168,32424264..32424344, 32424696..32424767,32424840..32424934,32425055..32425143, 32425234..32425296,32425378..32425418,32426164..32426709, 32429011..32429036) /locus_tag="TCM_016334" /product="Monodehydroascorbate reductase 6 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene31837" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031321t1" /inference="similar to AA sequence:ricco:30190.m011270" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1191t5; alternateUTRof:Thecc1EG016334t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10852t4" mRNA join(32421321..32421568,32421693..32421870, 32421987..32422086,32422193..32422270,32422592..32422663, 32422952..32423070,32423192..32423276,32423379..32423468, 32423769..32423870,32424121..32424168,32424264..32424344, 32424696..32424767,32424840..32424934,32425055..32425143, 32425234..32425296,32425378..32425418,32426164..32426301) /locus_tag="TCM_016334" /product="Monodehydroascorbate reductase 6 isoform 4" /inference="alignment:exonerate-protein:2:frave:gene31837" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031321t1" /inference="similar to AA sequence:ricco:30190.m011270" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc948t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10852t4" mRNA join(32421384..32421568,32421693..32421870, 32421987..32422086,32422193..32422270,32422592..32422663, 32422952..32423070,32423192..32423276,32423379..32423468, 32423769..32423870,32424079..32424168,32424264..32424344, 32424696..32424767,32424840..32424934,32425055..32425143, 32425234..32425296,32425378..32425418,32426164..32426461, 32426569..32426890) /locus_tag="TCM_016334" /product="Monodehydroascorbate reductase 6 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene31837" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031321t1" /inference="similar to AA sequence:ricco:30190.m011270" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10852t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10852t4" CDS join(32421559..32421568,32421693..32421870, 32421987..32422086,32422193..32422270,32422592..32422663, 32422952..32423070,32423192..32423276,32423379..32423468, 32423769..32423870,32424079..32424168,32424264..32424344, 32424696..32424767,32424840..32424934,32425055..32425143, 32425234..32425296,32425378..32425418,32426164..32426295) /locus_tag="TCM_016334" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011270; paralog of Thecc1EG031321t1" /codon_start=1 /product="Monodehydroascorbate reductase 6 isoform 1" /protein_id="EOY24843.1" /db_xref="TAIR:AT1G63940.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P92947" /translation="MFPVRKAMAGLSNSLQLKHGLALWCPRSSPLTRPYPSSSIRFNG FHRNFVVASSSSFSNDNREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE RPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYEDPVTTINIEK QTLTTNSGKLLKYGSLIIATGCTASRFPEKIGGNLPGVHYIRDIADADSLISSLEKAK KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEELYKENGVKF LKGASIKNLEAGSNGQVAAVKLGDGSTIEADTIIIGIGAKPAVSSFEMVGLNTTVGGI QVDGLFRTSIPGIFAVGDVAAFPLKMYDRMARVEHVDHARRSAQHCVKALLSAQTHTY DYLPYFYSRVFEYEGSPKKVWWQFFGDNAGETVEIGNFDPKIATFWIDSGKLKGVLLE SGSAEEFKLLPELARSQPSIDKAKLQKASSVEEALEIAKASLLVGQKP" CDS join(32421559..32421568,32421693..32421870, 32421987..32422086,32422193..32422270,32422592..32422663, 32422952..32423070,32423192..32423276,32423379..32423468, 32423769..32423870,32424079..32424168,32424264..32424344, 32424696..32424767,32424840..32424934,32425055..32425143, 32425234..32425296,32425378..32425418,32426164..32426295) /locus_tag="TCM_016334" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011270; paralog of Thecc1EG031321t1" /codon_start=1 /product="Monodehydroascorbate reductase 6 isoform 1" /protein_id="EOY24844.1" /db_xref="TAIR:AT1G63940.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P92947" /translation="MFPVRKAMAGLSNSLQLKHGLALWCPRSSPLTRPYPSSSIRFNG FHRNFVVASSSSFSNDNREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE RPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYEDPVTTINIEK QTLTTNSGKLLKYGSLIIATGCTASRFPEKIGGNLPGVHYIRDIADADSLISSLEKAK KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEELYKENGVKF LKGASIKNLEAGSNGQVAAVKLGDGSTIEADTIIIGIGAKPAVSSFEMVGLNTTVGGI QVDGLFRTSIPGIFAVGDVAAFPLKMYDRMARVEHVDHARRSAQHCVKALLSAQTHTY DYLPYFYSRVFEYEGSPKKVWWQFFGDNAGETVEIGNFDPKIATFWIDSGKLKGVLLE SGSAEEFKLLPELARSQPSIDKAKLQKASSVEEALEIAKASLLVGQKP" CDS join(32421559..32421568,32421693..32421870, 32421987..32422086,32422193..32422270,32422592..32422663, 32422952..32423070,32423192..32423276,32423379..32423468, 32423769..32423870,32424121..32424168,32424264..32424344, 32424696..32424767,32424840..32424934,32425055..32425143, 32425234..32425296,32425378..32425418,32426164..32426295) /locus_tag="TCM_016334" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30190.m011270; paralog of Thecc1EG031321t1" /codon_start=1 /product="Monodehydroascorbate reductase 6 isoform 4" /protein_id="EOY24846.1" /db_xref="TAIR:AT1G63940.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P92947" /translation="MFPVRKAMAGLSNSLQLKHGLALWCPRSSPLTRPYPSSSIRFNG FHRNFVVASSSSFSNDNREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE RPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYEDPVTTINIEK QTLTTNSGKLLKYGSLIIATGCTASRFPEKIGGNLPGVHYIRDIADADSLISSLEKAK KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEELYKENGVKF LKVAAVKLGDGSTIEADTIIIGIGAKPAVSSFEMVGLNTTVGGIQVDGLFRTSIPGIF AVGDVAAFPLKMYDRMARVEHVDHARRSAQHCVKALLSAQTHTYDYLPYFYSRVFEYE GSPKKVWWQFFGDNAGETVEIGNFDPKIATFWIDSGKLKGVLLESGSAEEFKLLPELA RSQPSIDKAKLQKASSVEEALEIAKASLLVGQKP" mRNA join(32421576..32421870,32421987..32422086, 32422193..32422270,32422592..32422663,32422952..32423070, 32423192..32423276,32423379..32423468,32423769..32423870, 32424079..32424168,32424264..32424344,32424696..32424767, 32424840..32424934,32425055..32425143,32425234..32425296, 32425378..32425418,32426164..32426461,32426569..32426709, 32429011..32429036) /locus_tag="TCM_016334" /product="Monodehydroascorbate reductase 6 isoform 3" /inference="alignment:exonerate-protein:2:frave:gene31837" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031321t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09830.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1191t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10852t4" CDS join(32421704..32421870,32421987..32422086, 32422193..32422270,32422592..32422663,32422952..32423070, 32423192..32423276,32423379..32423468,32423769..32423870, 32424079..32424168,32424264..32424344,32424696..32424767, 32424840..32424934,32425055..32425143,32425234..32425296, 32425378..32425418,32426164..32426295) /locus_tag="TCM_016334" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG031321t1" /codon_start=1 /product="Monodehydroascorbate reductase 6 isoform 3" /protein_id="EOY24845.1" /db_xref="Phytozome:POPTR_0001s09830.1" /db_xref="TAIR:AT1G63940.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P92947" /translation="MAGLSNSLQLKHGLALWCPRSSPLTRPYPSSSIRFNGFHRNFVV ASSSSFSNDNREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG YLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYEDPVTTINIEKQTLTTNS GKLLKYGSLIIATGCTASRFPEKIGGNLPGVHYIRDIADADSLISSLEKAKKVVVVGG GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEELYKENGVKFLKGASIK NLEAGSNGQVAAVKLGDGSTIEADTIIIGIGAKPAVSSFEMVGLNTTVGGIQVDGLFR TSIPGIFAVGDVAAFPLKMYDRMARVEHVDHARRSAQHCVKALLSAQTHTYDYLPYFY SRVFEYEGSPKKVWWQFFGDNAGETVEIGNFDPKIATFWIDSGKLKGVLLESGSAEEF KLLPELARSQPSIDKAKLQKASSVEEALEIAKASLLVGQKP" gene 32428403..32430228 /locus_tag="TCM_016336" /note="dbxref CacaoGD:Thecc1EG016336" mRNA join(32428403..32428593,32429011..32429055, 32429515..32429590,32429703..32430227) /locus_tag="TCM_016336" /product="Heavy metal transport/detoxification superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019413001" /inference="similar to AA sequence:Phytozome:POPTR_0001s09840.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1166t3_C2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1166t3_C2" mRNA join(<32428568..32428593,32429515..32429590, 32429703..32430228) /locus_tag="TCM_016336" /product="Heavy metal transport/detoxification superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019413001" /inference="similar to AA sequence:Phytozome:POPTR_0001s09840.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1166t2_C2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1166t3_C2" CDS join(<32428570..32428593,32429515..32429590, 32429703..32430007) /locus_tag="TCM_016336" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein, putative isoform 2" /protein_id="EOY24848.1" /db_xref="Phytozome:POPTR_0001s09840.1" /translation="FVKPGGYLKVVLKLDLHDDKGKQKAMKAVSGLSGIDSIAMDMKD KKLTVIGDVDPVDVVSKLRKQWYTEIVTVGPAKEEKKDGGKKDEGKKDDKKKQSDQID ELVKAYKAYNPYMTTHYRVVSAEENPNACVIC" CDS join(32429050..32429055,32429515..32429590, 32429703..32430007) /locus_tag="TCM_016336" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein isoform 1" /protein_id="EOY24847.1" /db_xref="Phytozome:POPTR_0001s09840.1" /db_xref="TAIR:AT1G01490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKD3" /translation="MKKVVLKLDLHDDKGKQKAMKAVSGLSGIDSIAMDMKDKKLTVI GDVDPVDVVSKLRKQWYTEIVTVGPAKEEKKDGGKKDEGKKDDKKKQSDQIDELVKAY KAYNPYMTTHYRVVSAEENPNACVIC" gene complement(32431246..32432901) /locus_tag="TCM_016337" /note="dbxref CacaoGD:Thecc1EG016337" mRNA complement(join(32431246..32432410,32432489..32432901)) /locus_tag="TCM_016337" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(join(32432213..32432410,32432489..32432728)) /locus_tag="TCM_016337" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24849.1" /translation="MIIQQHTCTIDVNTFQCYLSASPPEIGVNGAIYHVRYSSTGSMY VTASKDGAIRLWDGISHSWCTWSSRGHKCMFYEGSKNKKLYMLFVILLNGENMSCQKN IYNLLKHQFYLEKIDPVAINISPTTVPVPKIGTRSLNSTMRFL" gene complement(32432893..32436345) /locus_tag="TCM_016338" /note="dbxref CacaoGD:Thecc1EG016338" mRNA complement(join(32432893..32434388,32435674..32435806, 32435932..32436345)) /locus_tag="TCM_016338" /product="1-aminocyclopropane-1-carboxylate synthase isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011272" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005265t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc338t7_C2; inference alignment:Newbler:10:TSA:cgbaB_g05273t00001" mRNA complement(join(32432948..32434390,32435403..32435563, 32435675..32435806,32435932..32436248)) /locus_tag="TCM_016338" /product="1-aminocyclopropane-1-carboxylate synthase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011272" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005265t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05273t00001" CDS complement(join(32433394..32434390,32435403..32435563, 32435675..32435806,32435932..32436078)) /locus_tag="TCM_016338" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005265t1" /codon_start=1 /product="1-aminocyclopropane-1-carboxylate synthase isoform 1" /protein_id="EOY24850.1" /db_xref="Phytozome:POPTR_0003s13220.1" /db_xref="TAIR:AT4G11280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P31531" /translation="MVAMSKIATGNGHGENSPYFDGWKAYETNPFHPTERPNGVIQMG LAENQLCFDFFQKWLMKHPEASLCSPEGVRKFKETALFQDYHGMPEFRKAVAKFMGKV RGDRVKFDPDRIVMSGGATGAHEMVTFCLADPGEAFLVPTPYYPGFDRDLRWRTRVEL VPVDCESSNNFKITRTALEAAYEKAQAANLRVKGLLITNPSNPLGTILDRETLKSIVS FINEKNIHLIGDEIYSATVFMEPEFVSISEIIEEDIECNRDLIHIVYSLSKDMGLPGF RVGIVYSYNDAVVSCARKMSSFGLVSSQTQHLIASMLSDDDFVESFIVESKERLFKRH KYFTWSLSQVGIGSLQSNAGLFIWMDLRKLLKEKTFKAEMDLWQVIIKEVKLNVSPGS SFHCQEPGWFRVCFANMDDNTVEVALMRIRTFMLKNNEAMVPRSKLCRRSSLKLSLSR RKDDFITSPGIMSPHSPLPTSPLVRART" CDS complement(join(32433394..32434388,32435674..32435806, 32435932..32436078)) /locus_tag="TCM_016338" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005265t1" /codon_start=1 /product="1-aminocyclopropane-1-carboxylate synthase isoform 2" /protein_id="EOY24851.1" /db_xref="Phytozome:POPTR_0003s13220.1" /db_xref="TAIR:AT4G11280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P31531" /translation="MVAMSKIATGNGHGENSPYFDGWKAYETNPFHPTERPNGVIQMG LAENQLCFDFFQKWLMKHPEASLCSPEGVRKFKETALFQDYHGMPEFRKVDRDLRWRT RVELVPVDCESSNNFKITRTALEAAYEKAQAANLRVKGLLITNPSNPLGTILDRETLK SIVSFINEKNIHLIGDEIYSATVFMEPEFVSISEIIEEDIECNRDLIHIVYSLSKDMG LPGFRVGIVYSYNDAVVSCARKMSSFGLVSSQTQHLIASMLSDDDFVESFIVESKERL FKRHKYFTWSLSQVGIGSLQSNAGLFIWMDLRKLLKEKTFKAEMDLWQVIIKEVKLNV SPGSSFHCQEPGWFRVCFANMDDNTVEVALMRIRTFMLKNNEAMVPRSKLCRRSSLKL SLSRRKDDFITSPGIMSPHSPLPTSPLVRART" gene complement(32437187..32447460) /locus_tag="TCM_016340" /note="dbxref CacaoGD:Thecc1EG016340" mRNA complement(join(32437187..32437290,32439431..32439844, 32442508..32442638,32442873..32443193,32445039..32445183, 32445288..32445443,32447237..32447460)) /locus_tag="TCM_016340" /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019415001" /inference="similar to AA sequence:frave:gene31840" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04054t00001" CDS complement(join(32439611..32439844,32442508..32442638, 32442873..32443193,32445039..32445183,32445288..32445443, 32447237..32447320)) /locus_tag="TCM_016340" /note="dbxref frave:gene31840" /codon_start=1 /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase" /protein_id="EOY24852.1" /db_xref="TAIR:AT1G63970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAK8" /translation="MGSMLGDLPSFDPHNFSQLRPSDPSNPSKMTPATYRPTHSRTLP PPDQGIELIFFSLFLLVKQYSRGNIRYYWPYKLSAMVPSRMLNVDFCLRAASAGNYVE MSELELDMMSFFCKNGIALTNGLQIIAKPTPTTISNKSILLPNPRIITARHHNNILQS ASSSSSSSAFTLTASISPGATSVAVDGPTTSTKPSKSLPFRVGHGFDLHRLEPGYPLI IGGIDIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFI KEAVRLMHEVGYEIGNLDATLILQRPKLSPHKEAIKANLSELLGADPSVVNLKAKTHE KVDSLGENRSIAAHTVVLLMRK" mobile_element 32440615..32440774 /note="source:CACAO_Mutator_E1376_scaffold_6 1865 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(32449240..32449572) /note="source:CACAO_Helitron_E81_scaffold_3 1217 1544" /mobile_element_type="transposon:Helitron" mobile_element complement(32449279..32449626) /note="source:scaffold_2_CACTA_0244 13102 13470" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32449344..32449753 /note="source:scaffold_1_CACTA_0008 6617 6902" /mobile_element_type="transposon:TIR/CACTA" gene 32451835..32455740 /locus_tag="TCM_016341" /note="dbxref CacaoGD:Thecc1EG016341" mRNA join(32451835..32452093,32452189..32452273, 32452424..32452500,32452610..32452637,32452830..32452923, 32453045..32453111,32453910..32454006,32454290..32454468, 32454750..32454977,32455056..32455172,32455310..32455740) /locus_tag="TCM_016341" /product="D111/G-patch domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019417001" /inference="similar to AA sequence:Phytozome:GSVIVT01019417001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04486t00001" mRNA join(32451939..32452093,32452189..32452273, 32452424..32452500,32452610..32452637,32452833..32452923, 32453045..32453111,32453910..32454006,32454290..32454468, 32454750..32454977,32455056..32455172,32455310..32455640) /locus_tag="TCM_016341" /product="D111/G-patch domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019417001" /inference="similar to AA sequence:Phytozome:GSVIVT01019417001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06643t00001; inference alignment:Newbler:10:TSA:cgbaL_g04486t00001" mRNA join(32451939..32452093,32452189..32452273, 32452424..32452500,32452613..32452637,32452833..32452923, 32453045..32453111,32453910..32454006,32454290..32454468, 32454750..32454977,32455056..32455172,32455310..32455440) /locus_tag="TCM_016341" /product="D111/G-patch domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019417001" /inference="similar to AA sequence:Phytozome:GSVIVT01019417001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09245t00001; inference alignment:Newbler:10:TSA:cgbaL_g04486t00001" CDS join(32452016..32452093,32452189..32452273, 32452424..32452500,32452610..32452637,32452830..32452923, 32453045..32453111,32453910..32454006,32454290..32454468, 32454750..32454977,32455056..32455172,32455310..32455375) /locus_tag="TCM_016341" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="D111/G-patch domain-containing protein isoform 1" /protein_id="EOY24853.1" /db_xref="Phytozome:GSVIVT01019417001" /db_xref="TAIR:AT1G63980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C6THD0" /translation="MAAPEAPLCYVGIARQSAAFRLMKQMGWEEGEGLGKDKQGIKGY VRVKNKQDTTGVGLDKPNPWAFDTAQFDSILKRLKVQQAAPANDEAVDKNENQVETKT NVSNDAEEQVVKTTRPQGRYKKRERGKLVHAYSSKDLEGILVKKVEESPQANPDVGGE MELIETTESQDPPTEGHKAESVSPEWWGHKYGFVSGGFLGECTRKKAIKTGESKNSTE RTVFFEDDQENLYKLVQDKATTGKQGLGIKDRPKKIAGVRFQGKKTSFSDSDDEDSDD VGPLAKRMCDNAQEMEKADEPKLKLKKLCKQLLRQVPGESLKLKQLKVLIDERSSSVF SYFSSKKDALAYLKRKLAGSSKFSMEGKRVSLTSTSS" CDS join(32452016..32452093,32452189..32452273, 32452424..32452500,32452610..32452637,32452833..32452923, 32453045..32453111,32453910..32454006,32454290..32454468, 32454750..32454977,32455056..32455172,32455310..32455375) /locus_tag="TCM_016341" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="D111/G-patch domain-containing protein isoform 2" /protein_id="EOY24854.1" /db_xref="Phytozome:GSVIVT01019417001" /db_xref="TAIR:AT1G63980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C6THD0" /translation="MAAPEAPLCYVGIARQSAAFRLMKQMGWEEGEGLGKDKQGIKGY VRVKNKQDTTGVGLDKPNPWAFDTAQFDSILKRLKVQQAAPANDEVDKNENQVETKTN VSNDAEEQVVKTTRPQGRYKKRERGKLVHAYSSKDLEGILVKKVEESPQANPDVGGEM ELIETTESQDPPTEGHKAESVSPEWWGHKYGFVSGGFLGECTRKKAIKTGESKNSTER TVFFEDDQENLYKLVQDKATTGKQGLGIKDRPKKIAGVRFQGKKTSFSDSDDEDSDDV GPLAKRMCDNAQEMEKADEPKLKLKKLCKQLLRQVPGESLKLKQLKVLIDERSSSVFS YFSSKKDALAYLKRKLAGSSKFSMEGKRVSLTSTSS" CDS join(32452016..32452093,32452189..32452273, 32452424..32452500,32452613..32452637,32452833..32452923, 32453045..32453111,32453910..32454006,32454290..32454468, 32454750..32454977,32455056..32455172,32455310..32455375) /locus_tag="TCM_016341" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="D111/G-patch domain-containing protein isoform 3" /protein_id="EOY24855.1" /db_xref="Phytozome:GSVIVT01019417001" /db_xref="TAIR:AT1G63980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6THD0" /translation="MAAPEAPLCYVGIARQSAAFRLMKQMGWEEGEGLGKDKQGIKGY VRVKNKQDTTGVGLDKPNPWAFDTAQFDSILKRLKVQAAPANDEVDKNENQVETKTNV SNDAEEQVVKTTRPQGRYKKRERGKLVHAYSSKDLEGILVKKVEESPQANPDVGGEME LIETTESQDPPTEGHKAESVSPEWWGHKYGFVSGGFLGECTRKKAIKTGESKNSTERT VFFEDDQENLYKLVQDKATTGKQGLGIKDRPKKIAGVRFQGKKTSFSDSDDEDSDDVG PLAKRMCDNAQEMEKADEPKLKLKKLCKQLLRQVPGESLKLKQLKVLIDERSSSVFSY FSSKKDALAYLKRKLAGSSKFSMEGKRVSLTSTSS" gene complement(32455745..32460575) /locus_tag="TCM_016342" /note="dbxref CacaoGD:Thecc1EG016342" mRNA complement(join(32455745..32456151,32456228..32456355, 32456445..32456521,32456896..32456958,32457072..32457166, 32457260..32457388,32457554..32457642,32457769..32457906, 32458004..32458133,32458236..32458319,32458400..32458493, 32460285..32460575)) /locus_tag="TCM_016342" /product="Sporulation 11-2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019418001" /inference="similar to AA sequence:frave:gene31842" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc321t8" CDS complement(join(32456017..32456151,32456228..32456355, 32456445..32456521,32456896..32456958,32457072..32457166, 32457260..32457388,32457554..32457642,32457769..32457906, 32458004..32458133,32458236..32458319,32458400..32458480)) /locus_tag="TCM_016342" /note="dbxref frave:gene31842" /codon_start=1 /product="Sporulation 11-2" /protein_id="EOY24856.1" /db_xref="TAIR:AT1G63990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M4A1" /translation="MDDLRKSSMKFFSDQQLCYADVLHPHEVRARIQVAVLNFLKILN SPDPAISNLPLINRKSSNSRVREGLFTEVSWLFLSHSFCQRSLMRANAAKAFIRVWKV MEMCFEILIEDKKVTQRELFYKLLCDSPDYFSSQLQVNRTIQDVVALLRCSRNSLGIM ASSKGLVAGRILFQEPNQEVVDCSACGSSGYAISGDLKLLDSLIMKTDARYIIVVEKH AVFQRLAEDHVFNQIPSILLTAKGYPDIATRFLLHRMSRAFPDLPILALVDWNPAGLA ILCTYKFGSIGMGLEAYRYACNVKWLGLRGDDLQLIPEQSLAPLKPRDLQIAKGLISS VILQENYREELALMMQSGKRAEIEALYFHGYDYLGKYIAKKIVQASYI" mobile_element complement(32459842..32459883) /note="source:CACAO_M_S_E89272_F5_scaffold_8 8331 8364" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 32461030..32462557 /locus_tag="TCM_016343" /note="dbxref CacaoGD:Thecc1EG016343" mRNA join(32461030..32461533,32461625..32461741, 32461862..32462557) /locus_tag="TCM_016343" /product="WRKY family transcription factor, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011276" /inference="similar to AA sequence:ricco:30190.m011276" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1394t1" CDS join(32461157..32461533,32461625..32461741, 32461862..32462327) /locus_tag="TCM_016343" /note="dbxref ricco:30190.m011276" /codon_start=1 /product="WRKY family transcription factor, putative" /protein_id="EOY24857.1" /db_xref="TAIR:AT4G01250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUN4" /translation="MSEFYMENWDLRAVVGGSSNGACIPDMENPPFSFDPWSFQQEDL IMSFPDVFETNPKVLDELEELYKPFYPEFNPFSTQTIITSSLPVPQDEEKPESQKKQQ PVSQSAVSGTNKDSTQTAKPKRSSRKNQQNRVVKHVTADGLSSDIWAWRKYGQKPIKG SPYPRSYYRCSSSKGCLARKQVERSCSDPRIFIITYTAEHSHGHPTRRSSLAGSTRSK SSSTSKSLVNNNEPREAAETVLSPTTMKDESVQQDWSMKVEEQMLEDGHGDKILTPDI MLSDELDQRLDNFEGLFLDQFPDWSHELWSMNESATLTGGCWT" gene complement(32463907..32467358) /locus_tag="TCM_016344" /note="dbxref CacaoGD:Thecc1EG016344" mRNA complement(join(32463907..32464716,32464793..32464959, 32465052..32465160,32465246..32465398,32465491..32465568, 32465650..32465850,32466238..32466450,32466676..32467358)) /locus_tag="TCM_016344" /product="Glycosyl hydrolase 9B14" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09910.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015629t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09910.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10842t1" CDS complement(join(32464330..32464716,32464793..32464959, 32465052..32465160,32465246..32465398,32465491..32465568, 32465650..32465850,32466238..32466450,32466676..32466912)) /locus_tag="TCM_016344" /note="paralog of Thecc1EG015629t1" /codon_start=1 /product="Glycosyl hydrolase 9B14" /protein_id="EOY24858.1" /db_xref="Phytozome:POPTR_0001s09910.1" /db_xref="TAIR:AT4G23560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKC9" /translation="MRSGEIVWGLVLGSILAMASRHNGLAVEDSGLSATGYDYTDALH KAVLFFEGQRSGKLPARQRVKWRGDSALTDGEPDKVNLVGGYYDAGDNVKFGWPMAFT VTLLSWAAVEFRQEISSANQLNRLRSAIRWGSDFILRAHTSPTTLYTQVGNGDADHQC WERPEDMDTPRTLYKITSDSPGTEAAAEAAAALSAASLVFKGVKSNYSRRLLTKSKSL FEFADNYRGSYKDSCPFYCSFSGYQDELLWSAAWLYKASGDNKYFSYVLSNQGWSQQV SEFSWDNKFAGAQALLAKEFHGGKKDLSKYKTDVESFICALMPGSSSLQIKTTSGGLL YIRDSANLQYVTSSCMLLSIYVKTLKASQIDGIQCGSAHFSASQIREFVKLQVNYILG NNPMNMSYMVGIGSKYPMQLHHRGASIPSIHIRPSKVGCNDGYSSYYSSDSPNPNQHV GAIVGGPDSNDHYNDRRSDYSHAEPTTYINAAFVGAVAAFLDESKQQPLQLLQINGTI STIDSM" mobile_element complement(32467461..32467525) /note="source:CACAO_M_E22201_F289_scaffold_3 830 899" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32467512..32476008) /locus_tag="TCM_047023" /note="dbxref CacaoGD:Thecc1EG047023" mRNA complement(join(32467512..32468247,32468860..32469066, 32469329..32469452,32469769..32469971,32470399..32471211, 32471498..32471567,32472331..32472434,32472510..32474866, 32474977..32475015,32475101..32475206,32475650..32476008)) /locus_tag="TCM_047023" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09920.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s09920.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10858t4" mRNA complement(join(32467740..32468247,32468860..32469066, 32469329..32469452,32469769..32469971,32470399..32471211, 32471498..32471567,32472331..32472434,32472510..32475015, 32475101..32475206,32475650..32475909)) /locus_tag="TCM_047023" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="similar to AA sequence:Phytozome:GSVIVT01019421001" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10858t4" CDS complement(join(32468110..32468247,32468860..32469066, 32469329..32469452,32469769..32469971,32470399..32471211, 32471498..32471567,32472331..32472434,32472510..32474866, 32474977..32475015,32475101..32475206,32475650..32475805)) /locus_tag="TCM_047023" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY24859.1" /db_xref="Phytozome:POPTR_0001s09920.1" /db_xref="TAIR:AT4G11270.1" /translation="MKCRSVACIWSGTPPVHRVTATAALNHPPTLYTGGSDGSILWWN LSNSDSHSEIKPIAMLCGHAAPIADLGICCPIVVSGEQNTDYSKVVATAGVEESCLQS AEGGEISMDKESQNRKPSKCTVVIVDTYTLTIIQTVFHGNLSNGPLKFMNVFSSFDDG EKHFSLMADSLGRLHLVPLSKDSHQGGEQESGSQRNSFPQEIETCEDGLVEAGQVVSI ATCRNIVATVLKDRSIFRQLGNAIKIGVIFFMNNVLCIEGDLGPSHVVGAMFLESNNS ENAQSTGEAYEYENFLVWSNKGSAVVYTISYLNNTFNSQPLCEIPAASYPLDARMSFS FVHLSQILLRIESVCCVVEDPFQWRPRVTIWSLHQKHDDHGNLCQECTMLGDSISSLG WISGASLDHKNETLGGCKTKLTSIQSSVSCSETVNSIRADDSCYYSVPKGRIVSSSMV ISENLYAPSAIVYGFFSGEIEVVWFSLFRGLDSPTVSSCLEVDSHISRQSFSGHMGAI LCLAAHRMVGAAKGWSFSQVLVSGSMDCTIRIWDLDSGNLITVMHQHVGPVRQIILPP ARTERPWSDCFLSVGEDSCVALTSLETLRVERMFPGHPNYPAKVVWDGARGYIACLCR DHSRISDATDVLYIWDVKTGARERVLRGTASHSMFENFCKEISMTSISGSLLSGNTSV SSLLLPIHEDGNLSQYNLNNSESGASLSKMTGPSTSQANISKVNHGKAIPITPFVFQT RKQPFKCFCPYPGIATLSFDLAALINPYQKHESVAKDGNKQENGYTKEQGSETLSPHQ MNSDDGFVNDQSSTDTVEQHDWVKSLEEYLVRFSLSFLHLWDVDCGLDELLITEMKLK RPNEFIVSTGLQGDKGSLTLTFPGFTASLELWKSSSEFCAIRSLTMVSLAQHMISLSH SSSGASSALAAFYTRNFADKFPDIKPPSLQLLVSFWQDESEHVRMAARSLFHCAASRA IPSPLCGQQATQHAKHVRSLTGIEEIEHEVSRNGGTPMVGLSSECLLETQGTSQVEEA KLLAWLESYEMQDWISCVGGTSQDAMTSHIIVAAALVIWYPSLVKPSLATLVVQPLVK LVMAMNEKYSSTAAELLAEGMESTWKACIGSEIPRLISDIFFQIECVSGPSANLAGEN PAVSVSIRETLVGTLLPSLAMADILGFLTVIESQIWSTASDSPVHLVSLTTLIRVVRG SPRNLVQYLDKVVKFILQTMDPGNSVMRKTCLQCSMTALREVIRVFPMVAMNESSTKL AFGDPIGEINSATIRVYDMQSVTKIKVLDASGPPGLPSLLLGGPETSVTTVISALSFS SDGEGLVAFSEHGLMIRWWSLGSVWWERLSRNLVPVQCTKVIFVPPGEGFSPNTSRSS IMGSILGHDREANAQETVRSYTDKLKLLSHNLDLSYRLEWIGQRKVLLTRHGLEIASF PL" CDS complement(join(32468110..32468247,32468860..32469066, 32469329..32469452,32469769..32469971,32470399..32471211, 32471498..32471567,32472331..32472434,32472510..32474840)) /locus_tag="TCM_047023" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY24860.1" /db_xref="Phytozome:GSVIVT01019421001" /db_xref="TAIR:AT4G11270.1" /translation="MDKESQNRKPSKCTVVIVDTYTLTIIQTVFHGNLSNGPLKFMNV FSSFDDGEKHFSLMADSLGRLHLVPLSKDSHQGGEQESGSQRNSFPQEIETCEDGLVE AGQVVSIATCRNIVATVLKDRSIFRQLGNAIKIGVIFFMNNVLCIEGDLGPSHVVGAM FLESNNSENAQSTGEAYEYENFLVWSNKGSAVVYTISYLNNTFNSQPLCEIPAASYPL DARMSFSFVHLSQILLRIESVCCVVEDPFQWRPRVTIWSLHQKHDDHGNLCQECTMLG DSISSLGWISGASLDHKNETLGGCKTKLTSIQSSVSCSETVNSIRADDSCYYSVPKGR IVSSSMVISENLYAPSAIVYGFFSGEIEVVWFSLFRGLDSPTVSSCLEVDSHISRQSF SGHMGAILCLAAHRMVGAAKGWSFSQVLVSGSMDCTIRIWDLDSGNLITVMHQHVGPV RQIILPPARTERPWSDCFLSVGEDSCVALTSLETLRVERMFPGHPNYPAKVVWDGARG YIACLCRDHSRISDATDVLYIWDVKTGARERVLRGTASHSMFENFCKEISMTSISGSL LSGNTSVSSLLLPIHEDGNLSQYNLNNSESGASLSKMTGPSTSQANISKVNHGKAIPI TPFVFQTRKQPFKCFCPYPGIATLSFDLAALINPYQKHESVAKDGNKQENGYTKEQGS ETLSPHQMNSDDGFVNDQSSTDTVEQHDWVKSLEEYLVRFSLSFLHLWDVDCGLDELL ITEMKLKRPNEFIVSTGLQGDKGSLTLTFPGFTASLELWKSSSEFCAIRSLTMVSLAQ HMISLSHSSSGASSALAAFYTRNFADKFPDIKPPSLQLLVSFWQDESEHVRMAARSLF HCAASRAIPSPLCGQQATQHAKHVRSLTGIEEIEHEVSRNGGTPMVGLSSECLLETQG TSQVEEAKLLAWLESYEMQDWISCVGGTSQDAMTSHIIVAAALVIWYPSLVKPSLATL VVQPLVKLVMAMNEKYSSTAAELLAEGMESTWKACIGSEIPRLISDIFFQIECVSGPS ANLAGENPAVSVSIRETLVGTLLPSLAMADILGFLTVIESQIWSTASDSPVHLVSLTT LIRVVRGSPRNLVQYLDKVVKFILQTMDPGNSVMRKTCLQCSMTALREVIRVFPMVAM NESSTKLAFGDPIGEINSATIRVYDMQSVTKIKVLDASGPPGLPSLLLGGPETSVTTV ISALSFSSDGEGLVAFSEHGLMIRWWSLGSVWWERLSRNLVPVQCTKVIFVPPGEGFS PNTSRSSIMGSILGHDREANAQETVRSYTDKLKLLSHNLDLSYRLEWIGQRKVLLTRH GLEIASFPL" gene complement(32476291..32483816) /locus_tag="TCM_047025" /note="dbxref CacaoGD:Thecc1EG047025" mRNA complement(join(32476291..32477315,32477446..32478309, 32478388..32478504,32479070..32479121,32479743..32479797, 32479914..32480015,32480097..32480181,32480286..32480334, 32480433..32480500,32480698..32480769,32480845..32480896, 32481542..32481624,32481901..32481966,32482555..32482620, 32482840..32482912,32483555..32483816)) /locus_tag="TCM_047025" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011281" /inference="similar to AA sequence:ricco:30190.m011281" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1248t5" CDS complement(join(32476536..32477315,32477446..32478309, 32478388..32478504,32479070..32479121,32479743..32479797, 32479914..32480015,32480097..32480181,32480286..32480334, 32480433..32480500,32480698..32480769,32480845..32480896, 32481542..32481624,32481901..32481966,32482555..32482620, 32482840..32482912,32483555..32483730)) /locus_tag="TCM_047025" /note="dbxref ricco:30190.m011281" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY24861.1" /db_xref="TAIR:AT5G41580.1" /translation="MVPPAAATVSELGPGQPLSASVVNSFRVAAVAERLATHTQPGGQ PQSTEFFSLCLSLARGIDFAIANNEVPAKVQELPTLFKQICQRRNDLFLQAAIMVLMI SVKNACKMSWFSDKESQELFTLANEVGSCFCSSGDIKNGLNDSISTVLAIMSRFYPLM KMGQILASLEAKPGYGALVIDFHISKNAKHSPLEKIRLFVAQKDNIETSACIISPQQV NFLLNGKGVDRRTNVLMDTGPQMPTNVTAMLKYGTNLLQAVGQFWGHYIIVVAFMSME SSPDTSVLSDYVQSGDVAPDSEDSDIIEGPSRISLKCPISRIRIKTPVKGHACKHLQC FDFNNYVDINSRRPSWRCPHCNQHVCYTDIRIDQNMVKVLKEVAEDVSDVIISSDGSW KAVLENDDNVDELHDKILLCQKDGSEQPESAKAVPMVLDLTEDDNEVDAMETIEIEDM KPSVANLLSQSATQNLTTTPELTNTVGVNQNVASHMEDDFWSAFYLSQGSGASSARTD AQVGGISESTPNFTVSPVFSDAISPAPNRAEARGNANLTTLGIQNQFSAASNLQLQQS HLINSTSNHEYGRLQHIPRHINRTPVAIQALPATSQTPTQQQRPRNSLSTLSSNGSPL PQVNLSMAPSLNGLSTVSGDVERPPQFSRSPANPHQSWNQQERLFVPGPSVQQVAGVA ASSQLPGSYRASSGHLGEQQNLQQQQQLNMRLSQPRGPSPGLIRSPSPLLRTPTQQVA AQVGLGHTASNVNNNPTRFGTPTQRATQMTRQPPMVPVQTQTSRASSSYSGIVDGSRA SAGEQRLNMVGLAPAALRADTSSDLASEQNWRPTGRMRGSLSGRAYSAALSQLMIQPT QSAQAARPQTNLTSPPSVSPHLQALLVNSRNASVPQMQNNAMTEIGGMNGSSNFLPDR SSGMH" mobile_element complement(32484265..32484366) /note="source:CACAO_M_E26982_F230_scaffold_4 1170 1273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32484305..32484323 /note="source:scaffold_9_CACTA_0927 15055 15119" /mobile_element_type="transposon:TIR/CACTA" gene complement(32485496..32489758) /locus_tag="TCM_016346" /note="dbxref CacaoGD:Thecc1EG016346" mRNA complement(join(32485496..32485957,32486637..32486850, 32487198..32487757,32489428..32489758)) /locus_tag="TCM_016346" /product="Calcineurin-like metallo-phosphoesterase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011282" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026199t1" /inference="similar to AA sequence:ricco:30190.m011282" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10901t1" CDS complement(join(32485899..32485957,32486637..32486850, 32487198..32487757,32489428..32489605)) /locus_tag="TCM_016346" /note="dbxref ricco:30190.m011282; paralog of Thecc1EG026199t1" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein" /protein_id="EOY24862.1" /db_xref="TAIR:AT4G11240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48462" /translation="MDENLLDDIIRRLVEAKNGRTTKQVQLTEAEIKQLCVASKEIFL SQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPAANYLFLGDYVDRGKQSIETIC LLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFSVRVWKIFTDCFNCLPVAA LIDEKILCMHGGLSPDLKNLDQIRSIARPVDVPDQGLLCDLLWADPDKDVEGWGENDR GVSYTFGADKVSEFLQKHDLDLVCRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNA GAMMSVDDTLTCSFQILKSSEKKGKFGFTNNALRPGTPPHKGWEGLIKIACVGVHKVQ SA" gene 32491690..32498457 /locus_tag="TCM_016347" /note="dbxref CacaoGD:Thecc1EG016347" mRNA join(32491690..32492126,32492807..32493142, 32494414..32494569,32494812..32495149,32495964..32496477, 32496567..32496599,32497106..32498036) /locus_tag="TCM_016347" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011283" /inference="similar to AA sequence:Phytozome:GSVIVT01019426001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:PASA:2:TSA:puevd3b015791t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10888t3" mRNA join(32491696..32492126,32492798..32493142, 32493413..32493453,32494341..32494569,32494812..32495149, 32495910..32496477,32496567..32496599,32497106..32498457) /locus_tag="TCM_016347" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011283" /inference="similar to AA sequence:Phytozome:GSVIVT01019426001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10888t3" CDS join(32491979..32492126,32492798..32493142, 32493413..32493453,32494341..32494569,32494812..32495149, 32495910..32496477,32496567..32496599,32497106..32497614) /locus_tag="TCM_016347" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24863.1" /db_xref="Phytozome:GSVIVT01019426001" /db_xref="TAIR:AT1G64050.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TV74" /translation="MDAVELNYPVDVPKLMGSEGFGRGARVTEDCKPLLNSSIDCCTT SLRHKDFADETGVVNALESVSWSKIPDAELCKHASQLPSCQAEELYEQHDYRGTSRHL LNPAPDVVNAQRKAGKMPRSSSGCSKRARVAQLEDSVSSAGVDDVKDITDKLGSYSTK CNVPVLASILFPPYIGVCNLDYHCDLEIILIVYFLLFVTYIPDKTQMSRQKNSFSGKR GDRRSFKVPMKPKFDSFSMKAGLASFSVASGGSNFLGLCGLKSDIHDVTKLVEDLSLN ELLDGTYECPSLGREKGKKASNTTENFLQSVKKACSLLPLRRVQSQSFTDIDNSSHKK MPMYPPSSVSLAASCINGDKEDTCSTDPSACNKMLDKLVINCVLYLVSKTQDSCDKPE MPASPPDFQLCQAKDILERLALPPPKDLDSLLLDATKPSSSTRNNSDTRSGKQVPRRA SLPPFPWSHTFNGHCRTNSDAVKLLSNKSTCQGRWVKIPNTSSLPGIATGCFTDLESL AYDPSLIPSGSKFGNSGGGIASSTGNLHFCEQGSSSLATFTEAFNVPQESGLGLADQW NVGHCPRVLAAAQTLYDIATKSSRQNPDRITRWPKKPSQKAMKARKTKSIEKPEEIYA TPSVLGSDKLLRSDVDQIITSKRPKLSVVENKKGLSLINGVKKGPITWSTPRSSRSSP GKSLRDSVMEIRHSTANVVKPPCMMHPPATVFDKPCNSQHKLRKLMPMDWKRER" CDS join(32491979..32492126,32492807..32493142, 32494414..32494569,32494812..32495149,32495964..32496477, 32496567..32496599,32497106..32497614) /locus_tag="TCM_016347" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24864.1" /db_xref="Phytozome:GSVIVT01019426001" /db_xref="TAIR:AT1G64050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TV74" /translation="MDAVELNYPVDVPKLMGSEGFGRGARVTEDCKPLLNSSIDCCTT SLRHKDETGVVNALESVSWSKIPDAELCKHASQLPSCQAEELYEQHDYRGTSRHLLNP APDVVNAQRKAGKMPRSSSGCSKRARVAQLEDSVSSAGVDDVKDITDKLGSYSTKCNV PDKTQMSRQKNSFSGKRGDRRSFKVPMKPKFDSFSMKAGLASFSVASGGSNFLGLCGL KSDIHDVTKLVEDLSLNELLDGTYECPSLGREKGKKASNTTENFLQSVKKACSLLPLR RVQSQSFTDIDNSSHKKMPMYPPSSVSLAASCINGDKEDTCSTDPSACNKDSCDKPEM PASPPDFQLCQAKDILERLALPPPKDLDSLLLDATKPSSSTRNNSDTRSGKQVPRRAS LPPFPWSHTFNGHCRTNSDAVKLLSNKSTCQGRWVKIPNTSSLPGIATGCFTDLESLA YDPSLIPSGSKFGNSGGGIASSTGNLHFCEQGSSSLATFTEAFNVPQESGLGLADQWN VGHCPRVLAAAQTLYDIATKSSRQNPDRITRWPKKPSQKAMKARKTKSIEKPEEIYAT PSVLGSDKLLRSDVDQIITSKRPKLSVVENKKGLSLINGVKKGPITWSTPRSSRSSPG KSLRDSVMEIRHSTANVVKPPCMMHPPATVFDKPCNSQHKLRKLMPMDWKRER" gene complement(32498362..32499555) /locus_tag="TCM_016348" /note="dbxref CacaoGD:Thecc1EG016348" mRNA complement(join(32498362..32499155,32499256..32499555)) /locus_tag="TCM_016348" /product="UPF0706 protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019427001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041490t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13300.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10862t1" CDS complement(join(32498775..32499155,32499256..32499519)) /locus_tag="TCM_016348" /note="paralog of Thecc1EG041490t1" /codon_start=1 /product="UPF0706 protein, putative" /protein_id="EOY24865.1" /db_xref="Phytozome:POPTR_0003s13300.1" /db_xref="TAIR:AT5G41590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TV75" /translation="MFLFLKSLSRSVHEEHQEQVEYLSKSTQGPCTSLTVWRKSLIVN CNGFTVIDSDGNLVYRVDNYMGRPKELILMDGSGKSILTMRRGKNLGLVDTWLVYRGE VDDYCTSSTPSEKPIFYVRKRINILHANPNVLAYVYRRSSDKRYAYMIEGSYSQRSCK VLDETKRVVAEIRRKDAIIGGISLGLDVFLLRVQAGLDPGFAMALVLLLDRMFS" gene 32501270..32501987 /locus_tag="TCM_016349" /note="dbxref CacaoGD:Thecc1EG016349" mRNA join(32501270..32501619,32501710..32501987) /locus_tag="TCM_016349" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage" CDS join(32501563..32501619,32501710..32501886) /locus_tag="TCM_016349" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24866.1" /translation="MQKEAKLFILGFDFTVACRFSKPKTLEQSTLLLVQPAWLESSLL VVRAHITSLGDGCAQWAHSRFMAQPSSGSPSPS" mobile_element complement(32503758..32503830) /note="source:CACAO_on_E1_scaffold_1 86 163" /mobile_element_type="transposon:TIR/hAT" mobile_element 32503772..32503839 /note="source:CACAO_M_E33070_F96_scaffold_4 677 743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32503787..32503842 /note="source:CACAO_M_E42343_F106_scaffold_5 6719 6773" /mobile_element_type="retrotransposon:LTR/Copia" gene 32510568..32519619 /locus_tag="TCM_016350" /note="dbxref CacaoGD:Thecc1EG016350" mRNA join(32510568..32511704,32511792..32511951, 32512219..32512267,32512835..32512948,32514182..32514604, 32515993..32516379,32516492..32516587,32516819..32516934, 32517317..32517484,32517602..32517761,32517867..32518064, 32518152..32518280,32518525..32518603,32518699..32519619) /locus_tag="TCM_016350" /product="Respiratory burst oxidase protein A" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037473t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13310.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02656t00002" CDS join(32511095..32511704,32511792..32511951, 32512219..32512267,32512835..32512948,32514182..32514604, 32515993..32516379,32516492..32516587,32516819..32516934, 32517317..32517484,32517602..32517761,32517867..32518064, 32518152..32518280,32518525..32518603,32518699..32518808) /locus_tag="TCM_016350" /note="paralog of Thecc1EG037473t1" /codon_start=1 /product="Respiratory burst oxidase protein A" /protein_id="EOY24867.1" /db_xref="Phytozome:POPTR_0003s13310.1" /db_xref="TAIR:AT1G64060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q948U0" /translation="MRGGSLPTHERRWASDTVPAKTTLSSTTSPGTDSNSAEEFVEVT LDLQDDDTIILRSVEPATVINVDDGAETPVSAPASASRSPIIKRSSSNKLRQFSQELK AEAVAKAKQFSQELKAELRKFSWGHGHATQTVTGFDSALAARALRKQRAQLDRTRSGA QKALRGLRFISNNKTNAWEEVQNNFDKLAKDGFLFRSDFAQCIGMKDSKEFALEMFDA LSRRRRLKVEKISRDELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEAEVKEIIM LSASANKLSRLKEQAEEYAALIMEELDPERLGYIELWQLETLLLQKDTYLSYSQALSY TSQALSQNLQGLRKKSRIRRMSTKLLYYLEENWKRIWVVSLWIMIMIGLFTWKFFQYK QKSSFQVMGYCLLTAKGAAETLKFNMALILLPVCRNTITWLRSTKLGLFVPFDDNINF HKTIAAAIVIGVILHAGNHLACDFPKLINSSAKDYEVFLIHDFGSHKPTYIDLIKGAE GVTGILMVICMTIAFTLATTWFRRNLIKLPKPFDRITGFNAFWYSHHLFVIVYVLLVI HGVFLYLVHIWYRKTTWMYLAVPVLLYAGERILRFFRSGSYTVRILKVAIYPGGVLTL QMSKPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELRR LFSEVCEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYHKYDVLLLVGLGIGA TPFISILKDLLNNIVKMEEQADSVSDTSRTSDISIGSNDSTTPNRVSPKRKKTLKTTN AYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQAL NHAKNGVDIVSGTRVRTHFARPKWKNVLSKLSSKHCNARIGVFYCGAPVLAKELSKLC YEFNQKGSTKFEFHKEHF" mobile_element complement(32519992..32520618) /note="source:INTACT687_F13_scaffold_3-int 1298 2050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32520074..32520620) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17252 17862" /mobile_element_type="retrotransposon:LTR/Copia" gene 32521342..32522097 /locus_tag="TCM_016351" /note="dbxref CacaoGD:Thecc1EG016351" mRNA 32521342..32522097 /locus_tag="TCM_016351" /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein" /inference="alignment:exonerate-protein:2:frave:gene31857" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016352t1" /inference="similar to AA sequence:frave:gene31857" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14484t00001" CDS 32521429..32521986 /locus_tag="TCM_016351" /note="dbxref frave:gene31857; paralog of Thecc1EG016352t1" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein" /protein_id="EOY24868.1" /db_xref="TAIR:AT2G46150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6K8" /translation="MKGEGKRSNAKCLAYVAVFVVFQTAIILIFALTVMRIKNPKVRF GAVTVENFSTGNSSSPFFDMRLMAQVTVKNTNFGHFKYENSSIRILYGGMPVGEATIV KARARARQTKKFDVTIDISSSKLSTNSNLGNDIASGVLPLSSEAKLSGKVHLMKVIKK KKSSEMSCTMGINIGTRTVQDLKCK" gene 32523680..32526592 /locus_tag="TCM_016352" /note="dbxref CacaoGD:Thecc1EG016352" mRNA join(32523680..32524309,32525855..32526592) /locus_tag="TCM_016352" /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s09980.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016351t1" /inference="similar to AA sequence:frave:gene31857" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc5492t1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc6627t1" CDS join(32523776..32524309,32525855..32526001) /locus_tag="TCM_016352" /note="dbxref frave:gene31857; paralog of Thecc1EG016351t1" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein" /protein_id="EOY24869.1" /db_xref="TAIR:AT2G46150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6K8" /translation="MKVRREGSNAKCLAYVAAFVVFQTAIILLFALTVMRIRSPKVRF GAVTVESFSTVNSSSPSFDMKLMAQVAVKNTNFGHFKYENSTVTILYGGMPVGEAAIF KGRARARQTKKFNINVDISSSRLSSNSNLGNDINAGVLPLSSQAKLKGKVHLMKVIKK KKSGEMSCTMGINLATRANKSHKFRSSTSSLYRFDGTADNCLAFSDNEAPWKELNSVQ VSVNLSGK" mobile_element complement(32527082..32527267) /note="source:CACAO_PIF_E119_scaffold_3 4439 4639" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 32527870..32528881 /locus_tag="TCM_016353" /note="dbxref CacaoGD:Thecc1EG016353" mRNA 32527870..32528881 /locus_tag="TCM_016353" /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene31858" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015286t1" /inference="similar to AA sequence:frave:gene31858" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15511t00001" CDS 32527993..32528559 /locus_tag="TCM_016353" /note="dbxref frave:gene31858; paralog of Thecc1EG015286t1" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative" /protein_id="EOY24870.1" /db_xref="TAIR:AT2G46150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6K8" /translation="MLESEKYKRMQNMKCYAYIIAGVVFQTIIILVFALTVMRIKTPS ARLRSVTVQSLNYNASGVPHFNMRLIMEIAVKNKNFGHFRFDNTTANVTFGSVMVGDG EIVKSRARARKTKRMNVTVDVSSSAVSDEDELRTKLSSGTLTLTGVARLRGKVTLMKL MKKRKTAEMNCTMTVNLNSHAVQDLDCE" gene 32530379..32531292 /locus_tag="TCM_016354" /note="dbxref CacaoGD:Thecc1EG016354" mRNA 32530379..32531292 /locus_tag="TCM_016354" /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene31874" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015286t1" /inference="similar to AA sequence:frave:gene31873" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10878t1" CDS 32530479..32531126 /locus_tag="TCM_016354" /note="dbxref frave:gene31873; paralog of Thecc1EG015286t1" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative" /protein_id="EOY24871.1" /db_xref="TAIR:AT2G46150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6K8" /translation="MAEKDQQVHPLAPANGHPRSDEESASLQSKELKRKKRIKYAVYI AAFAVFQTVVILIFALTVMRVKNPKVRIGKVTVETMETSNTEAAASFNLRFITQVTVK NTNFGHYKFDNATMSFLYDGVMVGEAIIPKARARARSTKKLDVTVEVNSSALTSTTTG LGSELSSSVLTLNSQAKLKGKVELMKVMKKKKSPEMNCTLIFNVSTRSLQDLKCK" gene 32533470..32534519 /locus_tag="TCM_016355" /note="dbxref CacaoGD:Thecc1EG016355" mRNA 32533470..32534519 /locus_tag="TCM_016355" /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011286" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016353t1" /inference="similar to AA sequence:ricco:30190.m011286" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13047t00001" CDS 32533586..32534227 /locus_tag="TCM_016355" /note="dbxref ricco:30190.m011286; paralog of Thecc1EG016353t1" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative" /protein_id="EOY24872.1" /db_xref="TAIR:AT1G64065.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCI8" /translation="MQEDPQAKPLAPVEYYPRSDMEFGGIKPTASQRKEKSSKCLVYV LVGMVIQGAVLLIFASIVLRARTPDVEIVSVTVRNLKYGNSSAPSFNLTLVTEVTVEN SNFGDFKFENTTGTVWCGSVVVGKMKIPTGRAQARATERLNVSVDVSSLPLPDTKNVS CNISSGLLELNSHVKLSGKVSIMNFMKRRRHPEMNCFMTLNLTGQTKQDFPCE" mobile_element complement(32534963..32535676) /note="source:scaffold_4_CACTA_0511 13113 13839" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32535661..32535913 /note="source:CACAO_on_E69_scaffold_9 729 999" /mobile_element_type="transposon:TIR/hAT" gene 32537084..32538312 /locus_tag="TCM_016356" /note="dbxref CacaoGD:Thecc1EG016356" mRNA 32537084..32538312 /locus_tag="TCM_016356" /product="Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005250t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s13320.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1404t3" CDS 32537321..32537980 /locus_tag="TCM_016356" /note="paralog of Thecc1EG005250t2" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative" /protein_id="EOY24873.1" /db_xref="Phytozome:POPTR_0003s13320.1" /db_xref="TAIR:AT2G46150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX30" /translation="MADREQVKPLAPAAFQTRSDDEEALSKQLKLKRRRYIQCCGCVA ALLLIQAVVILVLFFTVFRIQDPMIRMNSVTIQRLEFFQNGSLRTDVNVTLLADVSVK NPNVAAFKFNNSTTLIYYGGRVVGEGHHLQGKAKARRTLRRNVTVDIIPEKILAVPSL MSDFASQALNISSYTRISGRVRILNFIKKKVVVKFNCTMTYRLSGQEFHGESCRPELD Y" mobile_element complement(32541078..32541345) /note="source:CACAO_on_E18_scaffold_1 7522 7789" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 32541158..32541475 /note="source:CACAO_Mutator_E592_scaffold_3 17374 17752" /mobile_element_type="transposon:TIR/Mutator" mobile_element 32541193..32541563 /note="source:CACAO_on_E373_scaffold_1 341 727" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(32542753..32544830) /locus_tag="TCM_016357" /note="dbxref CacaoGD:Thecc1EG016357" mRNA complement(join(32542753..32543338,32543445..32544805)) /locus_tag="TCM_016357" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13330.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13330.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc879t3; inference alignment:Newbler:10:TSA:cgbaB_g05313t00001" mRNA complement(join(32542808..32543347,32543445..32544830)) /locus_tag="TCM_016357" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13330.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13330.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05313t00001; inference alignment:Newbler:10:TSA:cgbaB_g05313t00001" CDS complement(join(32543244..32543338,32543445..32544699)) /locus_tag="TCM_016357" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24875.1" /db_xref="Phytozome:POPTR_0003s13330.1" /db_xref="TAIR:AT1G64080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKC2" /translation="MEAFSLLKYWRGGGGGGGLGGAAGGGGSNACVNARSAGTAGGTT TIVTAVTTHQAVDTDDDDDDDGPFFDLEFAVPDEDETEENEEIGKEEDNVEDEESEDQ IDDFDAKSDDGGSDGEREFNFTLSSGSINDRSDPNLTLSPSDDLFFKGRLVPIEPNSS LDSKPPQFPVSLLKSATKFRVFLLRFKKSKLNSTEKTESASANGSVSVPTATPKKQDT TQEENNNNNSNNNNKNKFFTVKFKVEEVPIMSLFSRDNSKSQKQQISEDSVSDEKKFS KDVMQKYLKKVKPLYVRVSRRYGEKLRFSGQLSLSSLKPATPPSTAAQKSVSGKVTTT EKGQVEVEVGESQVNGKNLKQVNFPAGLRVVCKHLGKSRSASSAVAAAPPVPALSQRR DDSLLQQQDGIQSAILHCKRSFNGSRESSVLPRSVSDPSHEKSINLSRKSTPDEAKE" CDS complement(join(32543244..32543347,32543445..32544699)) /locus_tag="TCM_016357" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24874.1" /db_xref="Phytozome:POPTR_0003s13330.1" /db_xref="TAIR:AT1G64080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKC2" /translation="MEAFSLLKYWRGGGGGGGLGGAAGGGGSNACVNARSAGTAGGTT TIVTAVTTHQAVDTDDDDDDDGPFFDLEFAVPDEDETEENEEIGKEEDNVEDEESEDQ IDDFDAKSDDGGSDGEREFNFTLSSGSINDRSDPNLTLSPSDDLFFKGRLVPIEPNSS LDSKPPQFPVSLLKSATKFRVFLLRFKKSKLNSTEKTESASANGSVSVPTATPKKQDT TQEENNNNNSNNNNKNKFFTVKFKVEEVPIMSLFSRDNSKSQKQQISEDSVSDEKKFS KDVMQKYLKKVKPLYVRVSRRYGEKLRFSGQLSLSSLKPATPPSTAAQKSVSGKVTTT EKGQVEVEVGESQVNGKNLKQVNFPAGLRVVCKHLGKSRSASSAVAAAPPVPALSQRR DDSLLQQQDGIQSAILHCKRSFNGSRDSSESSVLPRSVSDPSHEKSINLSRKSTPDEA KE" gene 32547570..32549210 /locus_tag="TCM_016358" /note="dbxref CacaoGD:Thecc1EG016358" mRNA join(32547570..32548553,32548960..32549210) /locus_tag="TCM_016358" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.73 coverage" CDS 32547619..32547987 /locus_tag="TCM_016358" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24876.1" /translation="MKDGPHSSSLFLWKTNSPPPSFFRFKAQLFPISSSIIFFGVLFT VALLVPRPRLDLIPVTILATCTFFINVAGLLGRSEIVFSLSPKYSIFWFTGCNSAACE GPIARFSPICFFLEYEKEIF" gene 32551350..32555154 /locus_tag="TCM_016360" /note="dbxref CacaoGD:Thecc1EG016360" mRNA join(32551350..32551783,32552670..32552860, 32552991..32553245,32553784..32553964,32554053..32554194, 32554376..32554445,32554527..32554652,32555001..32555154) /locus_tag="TCM_016360" /product="Reticulan like protein B3, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019440001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005247t1" /inference="similar to AA sequence:Phytozome:Glyma08g02250.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc549t2" mRNA join(32551757..32551783,32552554..32552806, 32552898..32553245,32553784..32553964,32554053..32554194, 32554376..32554445,32554527..32554677,32554874..32555018) /locus_tag="TCM_016360" /product="Reticulan like protein B3, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019440001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005247t1" /inference="similar to AA sequence:Phytozome:Glyma05g37300.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02513t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc549t2" mobile_element complement(32552014..32552090) /note="source:CACAO_M_E43428_F369_scaffold_5 1275 1336" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(32552831..32552860,32552991..32553245, 32553784..32553964,32554053..32554194,32554376..32554445, 32554527..32554677,32554874..>32554966) /locus_tag="TCM_016360" /product="Reticulan like protein B3, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019440001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005247t1" /inference="similar to AA sequence:Phytozome:Glyma05g37300.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc549t10; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc549t2" CDS join(32553050..32553245,32553784..32553964, 32554053..32554194,32554376..32554445,32554527..32554652, 32555001..32555095) /locus_tag="TCM_016360" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005247t1" /codon_start=1 /product="Reticulan like protein B3, putative isoform 1" /protein_id="EOY24877.1" /db_xref="Phytozome:Glyma08g02250.1" /db_xref="TAIR:AT1G64090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SH59" /translation="MAEHEEKHEETLMEKITEKIHGHDSSSSSSSDDEDNKPSESPIK SNVFRLFGREKPVHQVLGGGKPADIFLWRNKKISAGALGVATVIWVLFELLEYYLLTL VCHLLILALAILFLWSNATTFINKSPPRIPEVQIPKEPVLEFAQALRFEINRAFAVLR DIASGRDLKKFLSVIAGLWVLSIVGSWCNFLTLFYIVFVLLHSVPVLYEKYEDKVDSF SEKAMHEIKKQYAVFDAKVLIWMIHFYVCGVVDLMITITVVDVNAFHVLPK" CDS join(32553050..32553245,32553784..32553964, 32554053..32554194,32554376..32554445,32554527..32554677, 32554874..32555009) /locus_tag="TCM_016360" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005247t1" /codon_start=1 /product="Reticulan like protein B3, putative isoform 2" /protein_id="EOY24878.1" /db_xref="Phytozome:Glyma05g37300.1" /db_xref="TAIR:AT1G64090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SH59" /translation="MAEHEEKHEETLMEKITEKIHGHDSSSSSSSDDEDNKPSESPIK SNVFRLFGREKPVHQVLGGGKPADIFLWRNKKISAGALGVATVIWVLFELLEYYLLTL VCHLLILALAILFLWSNATTFINKSPPRIPEVQIPKEPVLEFAQALRFEINRAFAVLR DIASGRDLKKFLSVIAGLWVLSIVGSWCNFLTLFYIVFVLLHSVPVLYEKYEDKVDSF SEKAMHEIKKQYAVFDAKVLSKIPRGPLNFATHMVAFSWNYKLCDDMLSYFMLISALY IGLKVLSNCSGYQSG" CDS join(32553050..32553245,32553784..32553964, 32554053..32554194,32554376..32554445,32554527..32554677, 32554874..>32554964) /locus_tag="TCM_016360" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005247t1" /codon_start=1 /product="Reticulan like protein B3, putative isoform 3" /protein_id="EOY24879.1" /db_xref="Phytozome:Glyma05g37300.1" /db_xref="TAIR:AT1G64090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SH59" /translation="MAEHEEKHEETLMEKITEKIHGHDSSSSSSSDDEDNKPSESPIK SNVFRLFGREKPVHQVLGGGKPADIFLWRNKKISAGALGVATVIWVLFELLEYYLLTL VCHLLILALAILFLWSNATTFINKSPPRIPEVQIPKEPVLEFAQALRFEINRAFAVLR DIASGRDLKKFLSVIAGLWVLSIVGSWCNFLTLFYIVFVLLHSVPVLYEKYEDKVDSF SEKAMHEIKKQYAVFDAKVLSKIPRGPLNFATHMVAFSWNYKLCDDMLSYFMLISALY I" gene complement(32555141..32562630) /locus_tag="TCM_016363" /note="dbxref CacaoGD:Thecc1EG016363" mRNA complement(join(32555141..32555984,32556129..32556257, 32556423..32556491,32556580..32556718,32557117..32557685, 32557863..32558003,32558100..32558187,32558260..32558756, 32558895..32558959,32559644..32559735,32559832..32559874, 32560058..32560148,32560258..32560290,32560376..32560464, 32560586..32560707,32562038..32562345)) /locus_tag="TCM_016363" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006569" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015292t1" /inference="similar to AA sequence:frave:gene31984" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04172t00001" mRNA complement(join(32555488..32555984,32556129..32556257, 32556423..32556562,32556586..32556718,32557117..32557685, 32557863..32558003,32558100..32558187,32558260..32558756, 32558895..32558959,32559644..32559735,32559832..32559874, 32560058..32560148,32560258..32560290,32560376..32560464, 32560586..32560707,32562038..32562630)) /locus_tag="TCM_016363" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006569" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015292t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10050.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1154t5; inference alignment:Newbler:10:TSA:cgbaB_g04172t00001" CDS complement(join(32555871..32555984,32556129..32556257, 32556423..32556491,32556580..32556718,32557117..32557685, 32557863..32558003,32558100..32558187,32558260..32558756, 32558895..32558959,32559644..32559735,32559832..32559874, 32560058..32560148,32560258..32560290,32560376..32560464, 32560586..32560707,32562038..32562252)) /locus_tag="TCM_016363" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene31984; paralog of Thecc1EG015292t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY24880.1" /db_xref="TAIR:AT1G64110.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I5A3" /translation="MEQKHILLSALSVGVGVGVGLGLASGQSKWTGSGSGASTGITLE RMEKELLRQIVDGRESKVTFDQFPYYLSEQTQALLTSAAYVHLKHADVSKYTRNLSPA SRAILLSGPAELYQQMLAKALAHYFESKLLLLDVTDFSLKIQSKYGSGKESSFKRSTS ETTLERLSGIFGSFSLLSQEEHKGTLRRQSSGVDIGSRGVEDPPKLRRNASASANINS LASQCTSANPAPLRWTSSFSFDDKLLIQSLYKVLVYVSKATPLVLYLRDVDKLLFRSQ RIYNLFQRMLNKLSGNVLILGSRVVDLGNDDREVDERLTAIFPYNIEIRPPEDEKHLV SWKSQLEKDMKMIQAQDNRNHIMEVLSANDLDCDDLDSICVADTMALSKYIEEVVVSA ISYHLMNNKDPEYRNGKLMISSKSLSHGLSIFQEGKSTGKDTLKFEAETKTSKEAGEV SVGAKTESKSGSTNPEKKSEMETTATATKTEGENPAPAPKVTEVPPDNEFEKRIRPEV IPANEIDVTFADIGALDETKESLQELVMLPLRRPDLFQGGLLKPCRGILLFGPPGTGK TMLAKAIAREAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSM LGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPSERILVLAATNRPFDLDEAIIRRFERR IMVGLPSADNREKIFRTLLSKEKVVDGLNFSELVSMTEGYTGSDLKNLCTTAAYRPVR ELIQQERLKDLERKQKAAERQNTEDASTTKDGAEERIITLRPLNLEDFRQAKNQVAAS FSSEGAGMNELKQWNDLYGEGGSRKKEQLTYFL" CDS complement(join(32556545..32556562,32556586..32556718, 32557117..32557685,32557863..32558003,32558100..32558187, 32558260..32558756,32558895..32558959,32559644..32559735, 32559832..32559874,32560058..32560148,32560258..32560290, 32560376..32560464,32560586..32560707,32562038..32562252)) /locus_tag="TCM_016363" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015292t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY24881.1" /db_xref="Phytozome:POPTR_0001s10050.1" /db_xref="TAIR:AT1G64110.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I5A3" /translation="MEQKHILLSALSVGVGVGVGLGLASGQSKWTGSGSGASTGITLE RMEKELLRQIVDGRESKVTFDQFPYYLSEQTQALLTSAAYVHLKHADVSKYTRNLSPA SRAILLSGPAELYQQMLAKALAHYFESKLLLLDVTDFSLKIQSKYGSGKESSFKRSTS ETTLERLSGIFGSFSLLSQEEHKGTLRRQSSGVDIGSRGVEDPPKLRRNASASANINS LASQCTSANPAPLRWTSSFSFDDKLLIQSLYKVLVYVSKATPLVLYLRDVDKLLFRSQ RIYNLFQRMLNKLSGNVLILGSRVVDLGNDDREVDERLTAIFPYNIEIRPPEDEKHLV SWKSQLEKDMKMIQAQDNRNHIMEVLSANDLDCDDLDSICVADTMALSKYIEEVVVSA ISYHLMNNKDPEYRNGKLMISSKSLSHGLSIFQEGKSTGKDTLKFEAETKTSKEAGEV SVGAKTESKSGSTNPEKKSEMETTATATKTEGENPAPAPKVTEVPPDNEFEKRIRPEV IPANEIDVTFADIGALDETKESLQELVMLPLRRPDLFQGGLLKPCRGILLFGPPGTGK TMLAKAIAREAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSM LGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPSERILVLAATNRPFDLDEAIIRRFERR IMVGLPSADNREKIFRTLLSKEKVVDGLNFSELVSMTEGYTGSDCVVNR" gene complement(32562714..32564757) /locus_tag="TCM_016364" /note="dbxref CacaoGD:Thecc1EG016364" mRNA complement(join(32562714..32563660,32563980..32564001, 32564381..32564757)) /locus_tag="TCM_016364" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.42 coverage" CDS complement(join(32563328..32563660,32563980..32564001, 32564381..32564424)) /locus_tag="TCM_016364" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24882.1" /translation="MVQLQWGTDIDRSLLSTFTKFMVRGIVYGQLDWIKLGKVSSSGR QSPSQFRPAGLRKSRFYSWVADAAEPSCKHTQPNGGCGVPVKSISFVSLTCLSSFIGR KGAAAVSCVRSCHVQLQLWISGSSALNSDA" gene complement(32564854..32568616) /locus_tag="TCM_016365" /note="dbxref CacaoGD:Thecc1EG016365" mRNA complement(join(32564854..32566047,32566669..32566740, 32567592..32567744,32568257..32568616)) /locus_tag="TCM_016365" /product="CAAX amino terminal protease family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011298" /inference="similar to AA sequence:Phytozome:POPTR_0003s13360.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02207t00002" mRNA complement(join(32565070..32565744,32565853..32566047, 32566669..32566740,32567592..32567744,32568257..32568549)) /locus_tag="TCM_016365" /product="CAAX amino terminal protease family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30190.m011298" /inference="similar to AA sequence:Phytozome:POPTR_0003s13360.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00084t00001; inference alignment:Newbler:10:TSA:cgbaB_g02207t00002" mRNA complement(join(32565097..32565201,32565550..32566047, 32566669..32566740,32567592..32567744,32568257..32568550)) /locus_tag="TCM_016365" /product="CAAX amino terminal protease family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011298" /inference="similar to AA sequence:Phytozome:POPTR_0003s13360.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02207t00002; inference alignment:Newbler:10:TSA:cgbaB_g02207t00002" CDS complement(join(32565148..32565201,32565550..32566047, 32566669..32566740,32567592..32567744,32568257..32568406)) /locus_tag="TCM_016365" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="CAAX amino terminal protease family protein isoform 2" /protein_id="EOY24884.1" /db_xref="Phytozome:POPTR_0003s13360.1" /db_xref="TAIR:AT5G60750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZ58" /translation="MLSFYCSHSLAQRPTLASSLPKFRFANRPGTFSLTRSSRIFESN PKLTKNKWKISCFRHEGFSPENPKSEYVEQFLPEEVVQHDFEKSSARKRDWKSTLQEA ADAVLRAVGSGWTVPWTAETILQVMLLWVAAFWFIGSWMIPFAAHMAGFSKESLTFRG QALFSLVTDVTEGLAGIAILHRCLSQFHPLPSDWFKFSLKGKWLFDVVLGCLMFPVVN RLSQFNLNLLPLMPSTPVTLSSVEQSILARDPVAMALYAIVVSVCAPVWEEIVFRGFL LPSLTKYMPVWCAILVLQLNARSNTHADWPFS" CDS complement(join(32565379..32565744,32565853..32566047, 32566669..32566740,32567592..32567744,32568257..32568406)) /locus_tag="TCM_016365" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="CAAX amino terminal protease family protein isoform 3" /protein_id="EOY24885.1" /db_xref="Phytozome:POPTR_0003s13360.1" /db_xref="TAIR:AT5G60750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZ58" /translation="MLSFYCSHSLAQRPTLASSLPKFRFANRPGTFSLTRSSRIFESN PKLTKNKWKISCFRHEGFSPENPKSEYVEQFLPEEVVQHDFEKSSARKRDWKSTLQEA ADAVLRAVGSGWTVPWTAETILQVMLLWVAAFWFIGSWMIPFAAHMAGFSKESLTFRG QALFSLVTDVTEGLAGIAILHRCLSQFHPLLLPLMPSTPVTLSSVEQSILARDPVAMA LYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAILVSSVAFALAHFNVQRMLPLIF LGMVMGVVFARSRNLLPSMLLHSLWNGFVFLDLMR" CDS complement(join(32565379..32566047,32566669..32566740, 32567592..32567744,32568257..32568406)) /locus_tag="TCM_016365" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="CAAX amino terminal protease family protein isoform 1" /protein_id="EOY24883.1" /db_xref="Phytozome:POPTR_0003s13360.1" /db_xref="TAIR:AT5G60750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZ58" /translation="MLSFYCSHSLAQRPTLASSLPKFRFANRPGTFSLTRSSRIFESN PKLTKNKWKISCFRHEGFSPENPKSEYVEQFLPEEVVQHDFEKSSARKRDWKSTLQEA ADAVLRAVGSGWTVPWTAETILQVMLLWVAAFWFIGSWMIPFAAHMAGFSKESLTFRG QALFSLVTDVTEGLAGIAILHRCLSQFHPLPSDWFKFSLKGKWLFDVVLGCLMFPVVN RLSQFNLNLLPLMPSTPVTLSSVEQSILARDPVAMALYAIVVSVCAPVWEEIVFRGFL LPSLTKYMPVWCAILVSSVAFALAHFNVQRMLPLIFLGMVMGVVFARSRNLLPSMLLH SLWNGFVFLDLMR" gene complement(32569004..32575385) /locus_tag="TCM_016366" /note="dbxref CacaoGD:Thecc1EG016366" mRNA complement(join(32569004..32570738,32571270..32571524, 32571958..32572072,32572935..32572987,32573078..32573338, 32573673..32573723,32573831..32574079,32574163..32574406, 32574827..32575385)) /locus_tag="TCM_016366" /product="Potassium transporter family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017384t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s13370.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10907t3" mRNA complement(join(32569268..32570738,32571270..32571524, 32571958..32572072,32572935..32572987,32573078..32573338, 32573673..32573723,32573831..32574079,32574163..32574409, 32574827..32575157)) /locus_tag="TCM_016366" /product="Potassium transporter family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017384t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s13370.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1768t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10907t3" CDS complement(join(32569642..32570738,32571270..32571524, 32571958..32572072,32572935..32572987,32573078..32573338, 32573673..32573723,32573831..32574079,32574163..32574406, 32574827..32574829)) /locus_tag="TCM_016366" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017384t2" /codon_start=1 /product="Potassium transporter family protein isoform 1" /protein_id="EOY24886.1" /db_xref="Phytozome:POPTR_0003s13370.1" /db_xref="TAIR:AT4G23640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q942X8" /translation="MVDRRYQWKEVLLLAYQSFGVLFGDLSISPLYVYKSTFSGKLSN YQTEDVIFGAFSLIFWTFTLLSLFKHVIILLNADDNGEGGIFALYSLLCRHAKFSLLP NHQAADEELSTYHVLRYSSRNLQSSSAKKFAERHKKLKTALLLLVLFGTCLVICVGFL TPAMSVRSSIEGLKVRSNNLHYGVVVVIACILLVGLFVLQHRGTYRVAFMFAPILILW SLCIAAIGLYNIIKWNPRIYEALSPYYIYKFFRDTGRDGWISLGGVLLCITGTEALFA DLGQYTAASIRLSFCGIIYPCLVLQYMGQAAFLSKNFAAVSTSFYASIPDSLFWPVLV LATLAAMVASQSVISATFSIVKQCYAIGCFPRVKIVHKSKWFRGQIYIPEINWVLLIL SLAVMIGFRDINHLGNAYGFACMSATLVTTWLTAMVINFVWHQSLLLALLFVLFFGLV EIVFLSSSCVKIPKGGWVPLMLSVIFMLIMYVWHYGARKKYLYDLHNKVSMKWILTLG PSLGIVRVPGIGLIFTELVSGVPATFTHFLTNLPAFYQVVVFVCEKTVPVPYVPQKER YLIGRIGPKSFRMYRCIVRNGYKDVQKNEDDFENDLVMSIAEFIQLEAEGCGTVDGSL DGRLAVVRTSEKFGKRLEMSEPESNGEGSSSTSPAVLNGSKSHTLQYLQSTYELVSPR FSLRRRVRFKLQDVKYKDPNVKEELLELVEAKHSGVAYVLGHSHIKAKRNAPFLKRFV IHVAYSFLRKNCRAPAVVLNIPHTCLIEVGMNYYL" CDS complement(join(32569642..32570738,32571270..32571524, 32571958..32572072,32572935..32572987,32573078..32573338, 32573673..32573723,32573831..32574079,32574163..32574409, 32574827..32574829)) /locus_tag="TCM_016366" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017384t2" /codon_start=1 /product="Potassium transporter family protein isoform 2" /protein_id="EOY24887.1" /db_xref="Phytozome:POPTR_0003s13370.1" /db_xref="TAIR:AT4G23640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q942X8" /translation="MQVDRRYQWKEVLLLAYQSFGVLFGDLSISPLYVYKSTFSGKLS NYQTEDVIFGAFSLIFWTFTLLSLFKHVIILLNADDNGEGGIFALYSLLCRHAKFSLL PNHQAADEELSTYHVLRYSSRNLQSSSAKKFAERHKKLKTALLLLVLFGTCLVICVGF LTPAMSVRSSIEGLKVRSNNLHYGVVVVIACILLVGLFVLQHRGTYRVAFMFAPILIL WSLCIAAIGLYNIIKWNPRIYEALSPYYIYKFFRDTGRDGWISLGGVLLCITGTEALF ADLGQYTAASIRLSFCGIIYPCLVLQYMGQAAFLSKNFAAVSTSFYASIPDSLFWPVL VLATLAAMVASQSVISATFSIVKQCYAIGCFPRVKIVHKSKWFRGQIYIPEINWVLLI LSLAVMIGFRDINHLGNAYGFACMSATLVTTWLTAMVINFVWHQSLLLALLFVLFFGL VEIVFLSSSCVKIPKGGWVPLMLSVIFMLIMYVWHYGARKKYLYDLHNKVSMKWILTL GPSLGIVRVPGIGLIFTELVSGVPATFTHFLTNLPAFYQVVVFVCEKTVPVPYVPQKE RYLIGRIGPKSFRMYRCIVRNGYKDVQKNEDDFENDLVMSIAEFIQLEAEGCGTVDGS LDGRLAVVRTSEKFGKRLEMSEPESNGEGSSSTSPAVLNGSKSHTLQYLQSTYELVSP RFSLRRRVRFKLQDVKYKDPNVKEELLELVEAKHSGVAYVLGHSHIKAKRNAPFLKRF VIHVAYSFLRKNCRAPAVVLNIPHTCLIEVGMNYYL" gene complement(32575810..32581120) /locus_tag="TCM_016367" /note="dbxref CacaoGD:Thecc1EG016367" mRNA complement(join(32575810..32576593,32576846..32576945, 32577019..32577146,32577973..32578140,32578575..32578690, 32578938..32579090,32579306..32579449,32580141..32580427, 32580519..32580942)) /locus_tag="TCM_016367" /product="Calcium-dependent protein kinase 6 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011343" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040893t1" /inference="similar to AA sequence:ricco:30190.m011343" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10951t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10951t2" mRNA complement(join(32575934..32576409,32577040..32577146, 32577973..32578140,32578575..32578690,32578938..32579090, 32579306..32579449,32580141..32580427,32580519..32581120)) /locus_tag="TCM_016367" /product="Calcium-dependent protein kinase 6 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011343" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040893t1" /inference="similar to AA sequence:ricco:30190.m011343" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1034t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10951t2" CDS complement(join(32576370..32576409,32577040..32577146, 32577973..32578140,32578575..32578690,32578938..32579090, 32579306..32579449,32580141..32580427,32580519..32580934)) /locus_tag="TCM_016367" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011343; paralog of Thecc1EG040893t1" /codon_start=1 /product="Calcium-dependent protein kinase 6 isoform 2" /protein_id="EOY24889.1" /db_xref="TAIR:AT4G23650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49717" /translation="MGNCNGHPSADNQFRPDSDSGGGPHNGINIKAGPSPPRPQQHST THHSSSAASNHRLATPTTPPIGRVLGRPMEDVRSNYVFGRELGRGQFGITYLVTHKET KQQFACKSIATRKLINRDDIEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMEL CAGGELFDRILAKGHYSEREAANLCRQIVMVVHNCHSMGVMHRDLKPENFLFLSKDED SPLKATDFGLSVFFKRGDVFKDLVGSAYYVAPEVLRRRYGPEADIWSAGVILYILLSG VPPFYGETEQSIFDSILRGNIDFSSDPWPSVSSSAKDLVRKMLLDDPKERLSASEVLN HPWMREDGDASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKS MDTDNSGTITYEELKAGLPKLGTKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMN RMEREEHLYTAFQYFTTWDREIVLAF" CDS complement(join(32576510..32576593,32576846..32576945, 32577019..32577146,32577973..32578140,32578575..32578690, 32578938..32579090,32579306..32579449,32580141..32580427, 32580519..32580934)) /locus_tag="TCM_016367" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011343; paralog of Thecc1EG040893t1" /codon_start=1 /product="Calcium-dependent protein kinase 6 isoform 1" /protein_id="EOY24888.1" /db_xref="TAIR:AT4G23650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49717" /translation="MGNCNGHPSADNQFRPDSDSGGGPHNGINIKAGPSPPRPQQHST THHSSSAASNHRLATPTTPPIGRVLGRPMEDVRSNYVFGRELGRGQFGITYLVTHKET KQQFACKSIATRKLINRDDIEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMEL CAGGELFDRILAKGHYSEREAANLCRQIVMVVHNCHSMGVMHRDLKPENFLFLSKDED SPLKATDFGLSVFFKRGDVFKDLVGSAYYVAPEVLRRRYGPEADIWSAGVILYILLSG VPPFYGETEQSIFDSILRGNIDFSSDPWPSVSSSAKDLVRKMLLDDPKERLSASEVLN HPWMREDGDASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKS MDTDNSGTITYEELKAGLPKLGTKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMN RMEREEHLYTAFQYFDKDNSGYITMEELEQALRKYNMGDEKTIKEIIAEVDTDRDGRI NYDEFVAMMRKGNPDLVGNRRRK" gene 32584998..32588870 /locus_tag="TCM_016368" /note="dbxref CacaoGD:Thecc1EG016368" mRNA join(32584998..32585474,32585692..32585832, 32585951..32586220,32586371..32586510,32586630..32586776, 32587833..32588870) /locus_tag="TCM_016368" /product="Aluminum-activated malate transporter 9" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10080.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10080.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1698t1" CDS join(32585183..32585474,32585692..32585832, 32585951..32586220,32586371..32586510,32586630..32586776, 32587833..32588465) /locus_tag="TCM_016368" /codon_start=1 /product="Aluminum-activated malate transporter 9" /protein_id="EOY24890.1" /db_xref="Phytozome:POPTR_0001s10080.1" /db_xref="TAIR:AT3G18440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKB4" /translation="MNGKKGSVEINIPPAAKAKQPEVIRKSSFQGLSCKAWIWNVWEF CKEDSNRVTFSFKVGLAVLLVSLLILVQGPYEIFGTNIIWSILTVAIMFEYTVGATFN RGFNRALGSLLAGILAIAVAQLALRTGRVAEPIIIGISIFFIGAITSFMKLWPSFVPY EYGFRVILFTYCLIIVSGYRMGNPIRTAMDRLYSIAIGGFVAVFVNVLVFPIWAGEQL HKEIVNSFNSLADALEECVKKYLEDDGLDHPEFSKTVMDEFPDEPAYRKCRSTLNSSA KLESLANAAKWEPPHGRFQHFFYPWSEYVNVGAVLRHCAYEVMALHGVLHSEIQAPYN LRKTFQSEIQDATNQAAELVRSLGKDICNMRRSLKSSLLKRVYSSTERLQRAIEVHAY LLTVQCDPPDNSSKPLPKLSHAVSSTLCDLPDQLDNLDCTSPEKSSNQLTQNMQSGTP PPAQTESYHEMMRKQSRRLHSWPSREVDAFEEEGGFSTDLLPRMRALESTAALSLATF TSLLIEFVVRLDHLVEAVDELSKMAKFKHEGL" gene complement(32588872..32594094) /locus_tag="TCM_016369" /note="dbxref CacaoGD:Thecc1EG016369" mRNA complement(join(32588872..32590256,32590331..32592016, 32592215..32592300,32592998..32593058,32593776..32594094)) /locus_tag="TCM_016369" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011345" /inference="similar to AA sequence:Phytozome:POPTR_0003s13400.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc263t2" mRNA complement(join(32588993..32590249,32590382..32592016, 32592215..32592295,32592998..32593027)) /locus_tag="TCM_016369" /product="F22C12.10, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011345" /inference="similar to AA sequence:ricco:30190.m011345" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc263t6; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc263t2; inference alignment:Newbler:10:TSA:cgbaL_g15541t00001" mRNA complement(join(32588993..32590249,32590382..32592016, 32592215..32592533)) /locus_tag="TCM_016369" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence:ricco:30190.m011345" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc263t1; alternateUTRof:Thecc1EG016369t2" CDS complement(join(32589691..32590256,32590331..32591738)) /locus_tag="TCM_016369" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24891.1" /db_xref="Phytozome:POPTR_0003s13400.2" /db_xref="TAIR:AT1G64140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6I0" /translation="MDTRFSNLGFAANFSSNAFKILGGSMQVGGTGVAYGTDTVLRLD SPGSSIPYMSTSKGTKRKWSLMDGSVSEQVGSSLSLGLGRSSSSSDSKGSSTTACTTT SSAKEADEESSMDIELDFTLHLGNEKVNNLKKHASPNLKGLELQPKVDLGLSLSTGPS ESDITSVHLSSSPIQSGMEMPIAVDGAPNADEGSTSCCWKPRMALPPLQSLPGKQTSI FFKEVPRSIDLSPIVPDLSSSVITTPKSSVTCTSGITRQQQPQQRSSSSKTCQVEGCG KGARGASGRCISHGGGRRCQKPGCHKGAEGRTVYCKAHGGGRRCEFLGCTKSAEGRTD FCIAHGGGRRCSHEGCTRAARGKSGLCIRHGGGKRCQKENCTKSAEGLSGLCISHGGG RRCQFLGCTKGAQGSTMFCKAHGGGKRCTYPDCTKGAEGSTPFCKGHGGGKRCAFQGG GVCTKSVHGGTNFCVAHGGGKRCKFEGCGKSAQGSTDFCKAHGGGKRCSWGHPGSEYG NQLSGPCNSFARGKTGLCALHSGLVQDKRVHGGATLGPIVQDPKVSKSEKMKEIVTAE DMNVDIMKMGSDMEASAGRTCSSLNQYGVPNAHISVGERGFSVFVPEGRVHGGSLMAM LAGGSGPGSGDSEGLACDPSEPSKSFMVTQSWM" CDS complement(join(32589987..32590249,32590382..32591738)) /locus_tag="TCM_016369" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011345" /codon_start=1 /product="F22C12.10, putative isoform 2" /protein_id="EOY24892.1" /db_xref="TAIR:AT1G64140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SH64" /translation="MDTRFSNLGFAANFSSNAFKILGGSMQVGGTGVAYGTDTVLRLD SPGSSIPYMSTSKGTKRKWSLMDGSVSEQVGSSLSLGLGRSSSSSDSKGSSTTACTTT SSAKEADEESSMDIELDFTLHLGNEKVNNLKKHASPNLKGLELQPKVDLGLSLSTGPS ESDITSVHLSSSPIQSGMEMPIAVDGAPNADEGSTSCCWKPRMALPPLQSLPGKQTSI FFKEVPRSIDLSPIVPDLSSSVITTPKSSVTCTSGITRQQQPQQRSSSSKTCQVEGCG KGARGASGRCISHGGGRRCQKPGCHKGAEGRTVYCKAHGGGRRCEFLGCTKSAEGRTD FCIAHGGGRRCSHEGCTRAARGKSGLCIRHGGGKRCQKENCTKSAEGLSGLCISHGGG RRCQFLGCTKGAQGSTMFCKAHGGGKRCTYPDCTKGAEGSTPFCKGHGGGKRCAFQGG GVYASLKGVAKVHKVARISARHMVEGRDAPGVILDQNMAINFLVLVTPLQGARQDSVH STVAWFRIRGFMGVQHLGLLSKTPKLASPRR" CDS complement(join(32589987..32590249,32590382..32591738)) /locus_tag="TCM_016369" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m011345" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24893.1" /db_xref="TAIR:AT1G64140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6I0" /translation="MDTRFSNLGFAANFSSNAFKILGGSMQVGGTGVAYGTDTVLRLD SPGSSIPYMSTSKGTKRKWSLMDGSVSEQVGSSLSLGLGRSSSSSDSKGSSTTACTTT SSAKEADEESSMDIELDFTLHLGNEKVNNLKKHASPNLKGLELQPKVDLGLSLSTGPS ESDITSVHLSSSPIQSGMEMPIAVDGAPNADEGSTSCCWKPRMALPPLQSLPGKQTSI FFKEVPRSIDLSPIVPDLSSSVITTPKSSVTCTSGITRQQQPQQRSSSSKTCQVEGCG KGARGASGRCISHGGGRRCQKPGCHKGAEGRTVYCKAHGGGRRCEFLGCTKSAEGRTD FCIAHGGGRRCSHEGCTRAARGKSGLCIRHGGGKRCQKENCTKSAEGLSGLCISHGGG RRCQFLGCTKGAQGSTMFCKAHGGGKRCTYPDCTKGAEGSTPFCKGHGGGKRCAFQGG GVYASLKGVAKVHKVARISARHMVEGRDAPGVILDQNMAINFLVLVTPLQGARQDSVH STVAWFRIRGFMGVQHLGLLSKTPKLASPRR" gene complement(32594634..32595645) /locus_tag="TCM_016370" /note="dbxref CacaoGD:Thecc1EG016370" mRNA complement(32594634..32595645) /locus_tag="TCM_016370" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS complement(32594909..32595283) /locus_tag="TCM_016370" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24894.1" /translation="MQILIIFFKIKQTQKVFSFFKYHQFIIFNLDALMVRVVDKVGCI EGVVKIMCGKKTASRRGHKTEKRGGPRAVEGLSNKSVGPTRRGEEGGTWTMGAQRTVT SRCRLSIRKYGATLTCPRKFNF" mobile_element 32595351..32595469 /note="source:CACAO_Helitron_SS_E60_scaffold_7 1 127" /mobile_element_type="transposon:Helitron" mobile_element 32595646..32596077 /note="source:scaffold_8_CACTA_0855 1782 2246" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32596184..32596568 /note="source:scaffold_8_CACTA_0855 2230 2596" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32596741..32597346) /note="source:scaffold_4_CACTA_0483 1 667" /mobile_element_type="transposon:TIR/CACTA" gene complement(32598495..32604705) /locus_tag="TCM_016371" /note="dbxref CacaoGD:Thecc1EG016371" mRNA complement(join(32598495..32598622,32598839..32598973, 32599790..32599837,32600228..32600298,32600979..32601108, 32601257..32601331,32601481..32601532,32601883..32601951, 32602101..32602162,32602530..32602583,32603006..32603308, 32603712..32603796,32604189..32604705)) /locus_tag="TCM_016371" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011347" /inference="similar to AA sequence:Phytozome:GSVIVT01019449001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1239t9_C2" CDS complement(join(32598902..32598973,32599790..32599837, 32600228..32600298,32600979..32601108,32601257..32601331, 32601481..32601532,32601883..32601951,32602101..32602162, 32602530..32602583,32603006..32603308,32603712..32603796, 32604189..32604364)) /locus_tag="TCM_016371" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24895.1" /db_xref="Phytozome:GSVIVT01019449001" /db_xref="TAIR:AT1G64150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T9P2" /translation="MRGITLTESGLVVLSLLPPCLKPPKSFTSRLLSLNVNSLSKKQY SSKLSSRHQSLLFSRCYRNWSERTCEERFGRFLQKVAELQHGLEHKYVDCKNGEETRA LGHNSEDCCVSDHAPVNYNLRRGNYIATNLAISNTLFNNLLKFMVLFGLFTFQGSQPA AAVSDIASGLQLIPYIGDLGDISTGFASAFLLIFFSELGDKTFFIAALLAARNSAGVV FTGTFGALAAMTIISVVLGRTFHYVDELLPFRFGEADLPIDDIAAVCLLVYFGVSTLL DAASSDNQKADEEQKEAELAVSEFSGNGAGILAAANTVVSTFILVFIAEWGDKSFFST IALAAASSPLGVIGGALAGHGVATLLAVLGGSLLGTFLSEKAIAYIGGTLFLVFAAVT LIEIVN" mRNA complement(join(<32599809..32599837,32600979..32601108, 32601257..32601331,32601481..32601532,32601883..32601951, 32602101..32602162,32602530..32602583,32603006..32603308, 32603712..32603796,32604189..>32604401)) /locus_tag="TCM_016371" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g001390.1" /inference="alignment:exonerate- protein:2:ricco:30190.m011347" /inference="similar to AA sequence:Phytozome:GSVIVT01019449001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1239t2_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1239t9_C2" CDS complement(join(<32599809..32599837,32600979..32601108, 32601257..32601331,32601481..32601532,32601883..32601951, 32602101..32602162,32602530..32602583,32603006..32603308, 32603712..32603796,32604189..>32604400)) /locus_tag="TCM_016371" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24896.1" /db_xref="Phytozome:GSVIVT01019449001" /db_xref="TAIR:AT1G64150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T9P2" /translation="YRSRELLRECERMRGITLTESGLVVLSLLPPCLKPPKSFTSRLL SLNVNSLSKKQYSSKLSSRHQSLLFSRCYRNWSERTCEERFGRFLQKVAELQHGLEHK YVDCKNGEETRALGHNSEDCCVSDHAPVNYNLRRGNYIATNLAISNTLFNNLLKFMVL FGLFTFQGSQPAAAVSDIASGLQLIPYIGDLGDISTGFASAFLLIFFSELGDKTFFIA ALLAARNSAGVVFTGTFGALAAMTIISVVLGRTFHYVDELLPFRFGEADLPIDDIAAV CLLVYFGVSTLLDAASSDNQKADEEQKEAELAVSEFSGNGAGILAAANTVVSTFILVF IAEWGDKSFFSTIACCFGRLFTG" mRNA complement(join(32601256..32601532,32601883..32601951, 32602101..32602162,32602530..32602583,32603006..32603308, 32603712..32603796,32604189..32604401)) /locus_tag="TCM_016371" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g001390.1" /inference="alignment:exonerate- protein:2:ricco:30190.m011347" /inference="similar to AA sequence:Phytozome:GSVIVT01019449001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1255t6_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1239t9_C2" CDS complement(join(32601454..32601532,32601883..32601951, 32602101..32602162,32602530..32602583,32603006..32603308, 32603712..32603796,32604189..32604364)) /locus_tag="TCM_016371" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY24897.1" /db_xref="Phytozome:GSVIVT01019449001" /db_xref="TAIR:AT1G64150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T9P2" /translation="MRGITLTESGLVVLSLLPPCLKPPKSFTSRLLSLNVNSLSKKQY SSKLSSRHQSLLFSRCYRNWSERTCEERFGRFLQKVAELQHGLEHKYVDCKNGEETRA LGHNSEDCCVSDHAPVNYNLRRGNYIATNLAISNTLFNNLLKFMVLFGLFTFQGSQPA AAVSDIASGLQLIPYIGDLGDISTGFASAFLLIFFSELGDKTFFIAALLAARNSAGVV FTGTFGALAAMTIISVVLGRTFHYVDELLPFRFGEADLPIDDIAAVCLLVYYPLFRL" gene complement(32604753..32607543) /locus_tag="TCM_016372" /note="dbxref CacaoGD:Thecc1EG016372" mRNA complement(join(32604753..32605676,32606936..32607543)) /locus_tag="TCM_016372" /product="Disease resistance-responsive family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011348" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016373t1" /inference="similar to AA sequence:Phytozome:Glyma08g02330.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10931t1" CDS complement(join(32605223..32605676,32606936..32607486)) /locus_tag="TCM_016372" /note="paralog of Thecc1EG016373t1" /codon_start=1 /product="Disease resistance-responsive family protein" /protein_id="EOY24898.1" /db_xref="Phytozome:Glyma08g02330.1" /db_xref="TAIR:AT4G23690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX42" /translation="MKMEARRFLLLLFLLSLLSISTAATTRKIRARKPCKSMVLYFHD IIYNGKNAKNATSAIVGAPQWANRTLLAGQNHFGDLAVFDDPITLDNNLHSTPVGRAQ GFYFYDKKEIFTAWLGFSFVFNSTEHKGSINFAGADPLMNKTRDISVIGGTGDFFMAR GVATLMTDAFEGEVYFRLRTDIKFQLANPQSRHEMAATRLTSTLVLCLLLLLLSSSTA THRRKIRSRRPCKQMVFYFHDILYNGKNAKNATSAIVGAPAWGNRTILAGQNHFGNLV VFDDPITLDNNPHSTRVGRAQGFYLYDRKDYFTAWLGFSLVFNSTQHRPQRKDNICGA " gene complement(32609842..32610809) /locus_tag="TCM_016373" /note="dbxref CacaoGD:Thecc1EG016373" mRNA complement(32609842..32610809) /locus_tag="TCM_016373" /product="Disease resistance-responsive family protein" /inference="alignment:exonerate-protein:2:frave:gene32001" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019452001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016372t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10130.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(32610179..32610733) /locus_tag="TCM_016373" /note="paralog of Thecc1EG016372t1" /codon_start=1 /product="Disease resistance-responsive family protein" /protein_id="EOY24899.1" /db_xref="Phytozome:POPTR_0001s10130.1" /db_xref="TAIR:AT4G23690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P13240" /translation="MASKSCVLLSFFTVLAVSSAYPFKNKQYKPCKHLVLYFHDIIYN GQNRENATSAIVAAPQGANLTILAGQFHFGNIVVFDDPITLDNNLHSKPVGRAQGMYI YDTKNTFTAWLGFSFVLNSTNYQGTVNFIGADPLMQKTRDISVVGGTGDFFMHRGVAT LTTDAFEGEVYFRLKVDIKFYECW" mobile_element complement(32613361..32613542) /note="source:CACAO_Helitron_E78_scaffold_2 1 160" /mobile_element_type="transposon:Helitron" gene complement(32613844..32614723) /locus_tag="TCM_016374" /note="dbxref CacaoGD:Thecc1EG016374" mRNA complement(32613844..32614723) /locus_tag="TCM_016374" /product="Disease resistance-responsive (dirigent-like protein) family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT4G11210.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016376t1" /inference="similar to AA sequence:frave:gene32002" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage" mobile_element 32613877..32614280 /note="source:scaffold_2_CACTA_0256 3833 4244" /mobile_element_type="transposon:TIR/CACTA" CDS complement(32614294..32614683) /locus_tag="TCM_016374" /note="dbxref frave:gene32002; paralog of Thecc1EG016376t1" /codon_start=1 /product="Disease resistance-responsive (dirigent-like protein) family protein, putative" /protein_id="EOY24900.1" /db_xref="TAIR:AT1G64160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SH66" /translation="MGAPPQKSYLCILFFTLFLVSQSVLATRKTLKQRQPCTRFSLYY HDNRFSGDDVANATSIAVLNATAFGNYNYGMLVIFDDPMTKDNSFFSPPAARAQGFYF YDGKTQYNAWFAFTLVFNSTEYKRLLA" gene 32615120..32615593 /locus_tag="TCM_016375" /note="dbxref CacaoGD:Thecc1EG016375" mRNA 32615120..32615593 /locus_tag="TCM_016375" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS 32615282..32615539 /locus_tag="TCM_016375" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24901.1" /translation="MRFFFFVCLFTEESGERPFFDIRSFHLIMAVAEDAGAKPGSSGQ NLKNMVKGNFLGSRTALHPSCALNIQIHADSVSLYRTFKRT" gene complement(32616087..32616855) /locus_tag="TCM_016376" /note="dbxref CacaoGD:Thecc1EG016376" mRNA complement(32616087..32616855) /locus_tag="TCM_016376" /product="Disease resistance-responsive (dirigent-like protein) family protein" /inference="alignment:exonerate-protein:2:frave:gene32003" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016373t1" /inference="similar to AA sequence:Phytozome:POPTR_0832s00200.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10940t1" CDS complement(32616267..32616794) /locus_tag="TCM_016376" /note="paralog of Thecc1EG016373t1" /codon_start=1 /product="Disease resistance-responsive (dirigent-like protein) family protein" /protein_id="EOY24902.1" /db_xref="Phytozome:POPTR_0832s00200.1" /db_xref="TAIR:AT1G64160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SH66" /translation="MLPCLLIPACISTLCLGYQKALNPQKPCKRFVLYYHDFLFGGDD MANATSAAATNMTKLGNFNFGMLVVFDDPMTKDQRLLSHPVARAQGFYFYDMKTDYNA WFAYTLIFNSSHHKGTLNIMGADMMMEKTRDLSVVGGRRDFFMARGIATFKTDTMQGD KYFRLKKDIKLYECH" mobile_element complement(32616872..32616927) /note="source:INTACT89_F140_scaffold_9-int 16492 16547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32616876..32616921 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5687 5732" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32617613..32619864) /locus_tag="TCM_016377" /note="dbxref CacaoGD:Thecc1EG016377" mRNA complement(join(32617613..32618212,32618545..32619202, 32619599..32619711)) /locus_tag="TCM_016377" /product="Nucleic acid-binding isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G11175.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s25780.1" /note="transcript variant 1; alternatively spliced; quality class is strong-utrpoor, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00141t00004; inference alignment:Newbler:10:TSA:cgbaB_g00141t00004" mRNA complement(join(32617613..32619202,32619599..32619711)) /locus_tag="TCM_016377" /product="Nucleic acid-binding isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G11175.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s25780.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00141t00002; alternateUTRof:Thecc1EG016377t1; inference alignment:Newbler:10:TSA:cgbaB_g00141t00004" mRNA complement(join(32618188..32618248,32618545..32619202, 32619599..32619864)) /locus_tag="TCM_016377" /product="Nucleic acid-binding isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G11175.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s25780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc891t1; alternateUTRof:Thecc1EG016377t1; inference alignment:Newbler:10:TSA:cgbaB_g00141t00004" CDS complement(join(32618842..32619202,32619599..32619687)) /locus_tag="TCM_016377" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nucleic acid-binding isoform 1" /protein_id="EOY24903.1" /db_xref="Phytozome:POPTR_0006s25780.1" /db_xref="TAIR:AT4G11175.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KR7" /translation="MASLCSNLHPPFLSLVLPRQNTVSSWFFINGRVKFNLKKVSTTR RITCKKASSRGPDNDRFVRSKIEKTVAKQGDKKFVHEGLITESLPNGMFRVLLDNQDL ILGYLSGKIRKNFVRVLPGDRVRVELSPYDSTKGRIVYRLRNKDASG" CDS complement(join(32618842..32619202,32619599..32619687)) /locus_tag="TCM_016377" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nucleic acid-binding isoform 1" /protein_id="EOY24904.1" /db_xref="Phytozome:POPTR_0006s25780.1" /db_xref="TAIR:AT4G11175.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KR7" /translation="MASLCSNLHPPFLSLVLPRQNTVSSWFFINGRVKFNLKKVSTTR RITCKKASSRGPDNDRFVRSKIEKTVAKQGDKKFVHEGLITESLPNGMFRVLLDNQDL ILGYLSGKIRKNFVRVLPGDRVRVELSPYDSTKGRIVYRLRNKDASG" CDS complement(join(32618842..32619202,32619599..32619687)) /locus_tag="TCM_016377" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Nucleic acid-binding isoform 1" /protein_id="EOY24905.1" /db_xref="Phytozome:POPTR_0006s25780.1" /db_xref="TAIR:AT4G11175.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KR7" /translation="MASLCSNLHPPFLSLVLPRQNTVSSWFFINGRVKFNLKKVSTTR RITCKKASSRGPDNDRFVRSKIEKTVAKQGDKKFVHEGLITESLPNGMFRVLLDNQDL ILGYLSGKIRKNFVRVLPGDRVRVELSPYDSTKGRIVYRLRNKDASG" gene complement(32620025..32629389) /locus_tag="TCM_016378" /note="dbxref CacaoGD:Thecc1EG016378" mRNA complement(join(32620025..32621519,32621619..32622620, 32622877..32623092,32623781..32623841,32624664..32624903)) /locus_tag="TCM_016378" /product="Cation/H+ exchanger 18 isoform 1" /inference="alignment:exonerate- protein:2:frave:gene32004.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016379t1" /inference="similar to AA sequence:frave:gene32004" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1282t1; alternateUTRof:Thecc1EG016378t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10946t2" mRNA complement(join(32620028..32621519,32621619..32622620, 32622877..32623329,32623781..32623878,32628950..32629389)) /locus_tag="TCM_016378" /product="Cation/H+ exchanger 18 isoform 1" /inference="alignment:exonerate- protein:2:frave:gene32004.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016379t1" /inference="similar to AA sequence:frave:gene32004" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10946t2" CDS complement(join(32620311..32621519,32621619..32622620, 32622877..32623077)) /locus_tag="TCM_016378" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene32004; paralog of Thecc1EG016379t1" /codon_start=1 /product="Cation/H+ exchanger 18 isoform 1" /protein_id="EOY24906.1" /db_xref="TAIR:AT5G41610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUQ7" /translation="MVSNATVGQKCPSPMKATSNGLFQGDNPLDYALPLAILQICLVV VLTRGLAFLLRPIRQPRVIAEIIGGILLGPSVLGRSKSYLQAIFPPKSLTVLDTLANI GLIFFLFLAGLEIDLKALRRTGKTALGIAVAGIGLPFALGIGSSFLLKATISKGVNAS AFLVFMGVALSITAFPVLARILAELKLLTTDVGRIAMSAAAVNDVAAWILLALAVALS GSNSSPAASLWVFLSGCVFVICLSFIVPPIFKWMAYRCHEGEPVEEMYICATLAAVLA AGFVTDAIGIHAMFGAFVVGVVFPKEGPFAGALVEKVEDLVSGLFLPLYFVSSGLKTN IATIQGLQSWGLLALVIFTACFGKIVGTVVVSLSCKVPAREAFALGFLMNTKGLVELI VLNIGRDRKVLNDQTFAIMVLMALFTTFITTPVVMAVYKPARSRKVDYKHRTIERKNP DTQLRILTCFHSSRNIPSMINLLEASRGVGKREGFSVYALHLMELSERSSAILMVHKA RKNGLPFWNKGRHSDSDHIVVAFEAFQQLSQVTVRSMTSISSMADMHEDICTTAERKR AAIIILPFHKHQRMDGSFETTRTDFRWVNQRVLEHAPCSIGILVDRGLGGTTHVSASN VSLSMTVLFFGGCDDREALAYGARMAEHPGISLNVIRFVVEPETIGEIARIDMQENSG LKSMSLDEEFLSKFKQKISNDDSVRYEEKAVRNATETFAAIREASRCNLVLVGRMPDG ELALALMRRSECPELGPVGCLLISPDFSATASVLVVQQYHGRVSLNLASDMEEESPDK DSESS" CDS complement(join(32620311..32621519,32621619..32622620, 32622877..32623077)) /locus_tag="TCM_016378" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene32004; paralog of Thecc1EG016379t1" /codon_start=1 /product="Cation/H+ exchanger 18 isoform 1" /protein_id="EOY24907.1" /db_xref="TAIR:AT5G41610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUQ7" /translation="MVSNATVGQKCPSPMKATSNGLFQGDNPLDYALPLAILQICLVV VLTRGLAFLLRPIRQPRVIAEIIGGILLGPSVLGRSKSYLQAIFPPKSLTVLDTLANI GLIFFLFLAGLEIDLKALRRTGKTALGIAVAGIGLPFALGIGSSFLLKATISKGVNAS AFLVFMGVALSITAFPVLARILAELKLLTTDVGRIAMSAAAVNDVAAWILLALAVALS GSNSSPAASLWVFLSGCVFVICLSFIVPPIFKWMAYRCHEGEPVEEMYICATLAAVLA AGFVTDAIGIHAMFGAFVVGVVFPKEGPFAGALVEKVEDLVSGLFLPLYFVSSGLKTN IATIQGLQSWGLLALVIFTACFGKIVGTVVVSLSCKVPAREAFALGFLMNTKGLVELI VLNIGRDRKVLNDQTFAIMVLMALFTTFITTPVVMAVYKPARSRKVDYKHRTIERKNP DTQLRILTCFHSSRNIPSMINLLEASRGVGKREGFSVYALHLMELSERSSAILMVHKA RKNGLPFWNKGRHSDSDHIVVAFEAFQQLSQVTVRSMTSISSMADMHEDICTTAERKR AAIIILPFHKHQRMDGSFETTRTDFRWVNQRVLEHAPCSIGILVDRGLGGTTHVSASN VSLSMTVLFFGGCDDREALAYGARMAEHPGISLNVIRFVVEPETIGEIARIDMQENSG LKSMSLDEEFLSKFKQKISNDDSVRYEEKAVRNATETFAAIREASRCNLVLVGRMPDG ELALALMRRSECPELGPVGCLLISPDFSATASVLVVQQYHGRVSLNLASDMEEESPDK DSESS" mobile_element 32626155..32626209 /note="source:CACAO_M_S_E51240_F74_scaffold_4 2222 2276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32626161..32626215) /note="source:scaffold_5_CACTA_0596 1745 1799" /mobile_element_type="transposon:TIR/CACTA" gene complement(32628941..32637835) /locus_tag="TCM_016379" /note="dbxref CacaoGD:Thecc1EG016379" mRNA complement(join(32628941..32630854,32630949..32631950, 32632100..32632362,32633847..32633921,32637668..32637835)) /locus_tag="TCM_016379" /product="Cation/H+ exchanger 18" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016378t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s13470.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10953t1" CDS complement(join(32629637..32630854,32630949..32631950, 32632100..32632300)) /locus_tag="TCM_016379" /note="paralog of Thecc1EG016378t2" /codon_start=1 /product="Cation/H+ exchanger 18" /protein_id="EOY24908.1" /db_xref="Phytozome:POPTR_0003s13470.1" /db_xref="TAIR:AT5G41610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUQ7" /translation="MATNATTASHCPSPMKATSNGLFQGDNPLDYALPLAILQICLVV ALTRILAFLLRPLRQPRVIAEIVGGILLGPSALGRNEKYLNAIFPSRSLTVLDTLANL GLLFFLFLVGLELDPKSLRRTGKKALCIALAGISVPFALGIGTSFALHATISKGVDEA PFLVFMGVALSITAFPVLARILAELKLLTTDIGRMAMSAAAVNDVAAWILLALAIALS GTGHSPLVSLWVFLCGSGFVLCCIFIVPPIFKWMAQRCPEGEPVEELYICATLAAVLA AGFVTDSIGIHALFGAFVIGVLVPKEGPFAGALVEKVEDLVSGLFLPLYFVSSGLKTN VATIRGAQSWGLLVLVIITACLGKIVGTVSVSLMCKVPFQEAAALGFLMNTKGLVELI VLNIGKDRKVLNDQTFAIMVLMAIFTTFITTPLVMAVYKPAKRMSKRDHKYRTIERKD TNTQLRILACFHSTRNIPSMINLIEASRGTEKKEGLCVYAMHLMELSERPSAILMVHK ARKNGLPFWNKGKQSNSDQVVVAFETFRQLSRVSVRPMTAISAMSGMHEDICTSAERK RAAVIILPFHRHQRLDGSLETTRTEFHSVNKQVLAEAPCSVGILVDRGLGGTTHISAS NVSSITTVLFFGGHDDREALTYGARMAEHPGISLTVIRFLPGPEISGDEIVRTDINTI SNASEGSTDERALIEFKKKISNDSTISYEERVVQNSTETIEVIREFSRCNLFLVGRMP ESQVAATLNAKSDCPELGPVGTLLTSPEFSTSASVLVVQQFTKHSPPPSVTSTKVAET PDPDIESA" mobile_element 32634992..32635100 /note="source:scaffold_6_CACTA_0714 13411 13515" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32635002..32635103) /note="source:scaffold_1_CACTA_0023 6338 6442" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32639179..32640264 /note="source:MITE_hAT_17 1 1086" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(32640729..32640823) /note="source:scaffold_4_CACTA_0502 2 98" /mobile_element_type="transposon:TIR/CACTA" gene 32642332..32648056 /locus_tag="TCM_016380" /note="dbxref CacaoGD:Thecc1EG016380" mRNA join(32642332..32642852,32643615..32644281, 32645507..32645632,32646245..32648056) /locus_tag="TCM_016380" /product="Plasma membrane, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m010769" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005219t1" /inference="similar to AA sequence:ricco:30190.m010769" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10955t1" CDS join(32643856..32644281,32645507..32645632, 32646245..32647768) /locus_tag="TCM_016380" /note="dbxref ricco:30190.m010769; paralog of Thecc1EG005219t1" /codon_start=1 /product="Plasma membrane, putative" /protein_id="EOY24909.1" /db_xref="TAIR:AT5G41620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX49" /translation="MLGRKKGKEREREMKRAEKSGEGVAEKEENLCEKLSRRVLLVGN RKGGGPCTPLPSWKLYHPQARLHHNNIPPPPAAVSARKLAASLWEFHQYLPHHPKMHR GVNNTNGRYHQRHHANLFKDKGIDFSHFLADPCPSSDPDQPESASSLRRHIAQTLMKH HRSIEKNNHALQPVSPASYGSSMEVAPYNPAVTPSSSLDFRGRVGESHYNLKTSTELL KVLNRIWSLEEQHASNISLIKALKMELDHSRVRIKELFRDQQADRHEIDDLMKQIAED KLVRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLAREVSEAKASLSNALKEL ERERKSRKLLEDLCDEFARGIKSYEQEVHTLRQKSDEDWAGVADHDRLILHISESWLD ERMQMKLEEAQSGFAEQNSIVDKLGFEIETFLQAKRVGTSVSKRTDYLSRKDRRKSLE SVPLNEAVSAPKDVCGEEDSAGSDSNCFELNKPSSVDLKSNEDEAVNGDVEEIMKSNH AEKKPSSHEKSKSRHPSSLQVKFEEKMARAICNGNKKSQLADSEQENTGVGNTTEITV SQKFENDEATHYGSDGRKNKLDEIHGLSSNYVLDNLIRNHIALSEGGNVNPENDCGEA SSSFPARRNQPSPVRQWMTKFTSPDVDVSEPSTKLPPGIKENTLKAKLLEARSKGQRS RLKIFKGKS" gene 32648169..32649023 /locus_tag="TCM_016381" /note="dbxref CacaoGD:Thecc1EG016381" mRNA join(32648169..32648498,32648695..32648827, 32648924..32649023) /locus_tag="TCM_016381" /product="Lactoylglutathione lyase / glyoxalase I family protein" /inference="alignment:exonerate-protein:2:frave:gene29257" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006096t1" /inference="similar to AA sequence:ricco:30190.m010770" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09793t00001" CDS join(32648335..32648498,32648695..32648827, 32648924..32648980) /locus_tag="TCM_016381" /note="dbxref ricco:30190.m010770; paralog of Thecc1EG006096t1" /codon_start=1 /product="Lactoylglutathione lyase / glyoxalase I family protein" /protein_id="EOY24910.1" /db_xref="TAIR:AT5G41650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2D596" /translation="MAAASFRWILQLHKDVPKAAKFYSQGLDFSVNICTLRWAELQSG PLKLALMQSPSDNVKQNGYSSLLSFTVNDINGTVTKLMALGAELDGSIKYEIHGKVAA MRCIDGHMIGLYEPA" gene complement(32648960..32651964) /locus_tag="TCM_016382" /note="dbxref CacaoGD:Thecc1EG016382" mRNA complement(join(32648960..32649153,32649231..32649354, 32649619..32649789,32649874..32649990,32650237..32650339, 32650445..32650611,32650686..32650978,32651058..32651283, 32651474..32651964)) /locus_tag="TCM_016382" /product="Acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase 29 kDa subunit" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13500.4" /inference="similar to AA sequence:Phytozome:POPTR_0003s13500.4" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02598t00001" CDS complement(join(32648987..32649153,32649231..32649354, 32649619..32649789,32649874..32649990,32650237..32650339, 32650445..32650611,32650686..32650978,32651058..32651133)) /locus_tag="TCM_016382" /codon_start=1 /product="Acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase 29 kDa subunit" /protein_id="EOY24911.1" /db_xref="Phytozome:POPTR_0003s13500.4" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BGD1" /translation="MPTNEASPKKEKSNNVIFKVYSIGKSTGFGNSSMEGKVLEMLEV GPCEDDYRLGFLIGQRFCSQIRSRLAGDLILQNQLLPFARTTQAQPLIKALSETNQKK FPRYWAELLGTAEGSGVPVLDIILINFRKEILPLISNTAMNSNGDTTDDCSDILVVSD LMALAAHNEDANVALVGHTYLIKRKLSNGLSFIAYTYAGELPSCAFGFNSHGMAFTLN SVPPTEDEIVPAGIGRNFVSRDLLEATSIADALAKIRSSEVSVGHSYNLIDIQTRMIL NVETASRSRVSVHEVGATPFFHANMYLHLQVQQVHDENSMSRQRRAALLPQESKTNFL SILGDTEDTKYPIYMTGPTLYTLCTAVIDLDEKSLTIVEGNPKKGKVSHVFSMYSKDL NPELVNCAEGTRL" gene complement(32653692..32655647) /locus_tag="TCM_016383" /note="dbxref CacaoGD:Thecc1EG016383" mRNA complement(join(32653692..32653846,32654156..32654524, 32654665..32654763,32654826..32655174,32655238..32655647)) /locus_tag="TCM_016383" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3755t2" CDS complement(join(32653802..32653846,32654156..32654353)) /locus_tag="TCM_016383" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24912.1" /translation="MSANIGITKTSPSSCLKKSLDQDLQECEALIFVLILCLWVILLF SSLDAKVKRSTFSVCPLSSSFPNNGSELNVERERER" gene 32664878..32668745 /locus_tag="TCM_016384" /note="dbxref CacaoGD:Thecc1EG016384" mRNA join(32664878..32665297,32665415..32665694, 32665778..32665930,32666440..32666561,32666643..32666706, 32666943..32667222,32667655..32668745) /locus_tag="TCM_016384" /product="POZ/BTB containin G-protein 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005217t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11033t2" mRNA join(32665042..32665297,32665415..32665694, 32666641..32666706,32666943..32667222,32667655..32668713) /locus_tag="TCM_016384" /product="POZ/BTB containin G-protein 1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005217t2" /inference="similar to AA sequence:ricco:30174.m008694" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc67t6_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11033t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10181t1" CDS join(32665433..32665694,32665778..32665930, 32666440..32666561,32666643..32666706,32666943..32667222, 32667655..32668468) /locus_tag="TCM_016384" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005217t1" /codon_start=1 /product="POZ/BTB containin G-protein 1 isoform 1" /protein_id="EOY24913.1" /db_xref="Phytozome:POPTR_0003s13510.1" /db_xref="TAIR:AT3G61600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82343" /translation="MRVPNVDLFDPRTIMDSDFSPGEASGSGSGDSDFGFAFNDSNFS DRVLRIEIMPDLRETKADGDGCSSIADWARNRKRRREDIKKENGADVVGQREEQTLNC NMPDTEDGVTYENQDEEAVAMIEGSPTDVGLNSNQIGNDATPSNDSSWNMDCSSVLRV KTIHISSPILAAKSPFFYKLFSNGMRESEQRHVTLRIHASEETALMDLLSFMYSNTLS TTIPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLLAEAVQP LTDAAKQFLADRYKDVTKFQEEVLNLPLAGIEAVFSSDDLQVASEDAVYDSVLKWART HYPKLEERRDVLATRLGRLIRFPYMTCRKLKKVLTCNDFDPELASKVVLEALFFKAET PYRQRAHAAEEANAPYRRFVERAYKYRPVKVVEFEMPRQQCVVYLDLKREECVHLFPA GRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVTFAVDYEFAARSKP TEDYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGILHLRAELTIRQ" CDS join(32665433..32665694,32666641..32666706, 32666943..32667222,32667655..32668468) /locus_tag="TCM_016384" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30174.m008694; paralog of Thecc1EG005217t2" /codon_start=1 /product="POZ/BTB containin G-protein 1 isoform 4" /protein_id="EOY24916.1" /db_xref="TAIR:AT3G61600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82343" /translation="MRVPNVDLFDPRTIMDSDFSPGEASGSGSGDSDFGFAFNDSNFS DRVLRIEIMPDLRETKADGDGCSSIADWARNRKRRREDIKKENELFSNGMRESEQRHV TLRIHASEETALMDLLSFMYSNTLSTTIPTALLDVLMAADKFEVASCMRYCSRLLRNL PMTCESALLYLDLPSSVLLAEAVQPLTDAAKQFLADRYKDVTKFQEEVLNLPLAGIEA VFSSDDLQVASEDAVYDSVLKWARTHYPKLEERRDVLATRLGRLIRFPYMTCRKLKKV LTCNDFDPELASKVVLEALFFKAETPYRQRAHAAEEANAPYRRFVERAYKYRPVKVVE FEMPRQQCVVYLDLKREECVHLFPAGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG LFLGMQEKGSVTFAVDYEFAARSKPTEDYVSKYKGNYTFTGGKAVGYRNLFGIPWTAF MADDSIYFINGILHLRAELTIRQ" mRNA join(32665665..32665694,32665778..32665930, 32666440..32666561,32666643..32666706,32666946..32667222, 32667655..32668713) /locus_tag="TCM_016384" /product="POZ/BTB containin G-protein 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005217t2" /inference="similar to AA sequence:Phytozome:GSVIVT01027032001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc67t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11033t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10181t1" mRNA join(32665665..32665694,32665784..32665930, 32666440..32666561,32666643..32666706,32666943..32667222, 32667655..32668713) /locus_tag="TCM_016384" /product="POZ/BTB containin G-protein 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005217t2" /inference="similar to AA sequence:Phytozome:GSVIVT01027032001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc67t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11033t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10181t1" CDS join(32665825..32665930,32666440..32666561, 32666643..32666706,32666943..32667222,32667655..32668468) /locus_tag="TCM_016384" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005217t2" /codon_start=1 /product="POZ/BTB containin G-protein 1 isoform 3" /protein_id="EOY24915.1" /db_xref="Phytozome:GSVIVT01027032001" /db_xref="TAIR:AT3G61600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O82343" /translation="MPDTEDGVTYENQDEEAVAMIEGSPTDVGLNSNQIGNDATPSND SSWNMDCSSVLRVKTIHISSPILAAKSPFFYKLFSNGMRESEQRHVTLRIHASEETAL MDLLSFMYSNTLSTTIPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLD LPSSVLLAEAVQPLTDAAKQFLADRYKDVTKFQEEVLNLPLAGIEAVFSSDDLQVASE DAVYDSVLKWARTHYPKLEERRDVLATRLGRLIRFPYMTCRKLKKVLTCNDFDPELAS KVVLEALFFKAETPYRQRAHAAEEANAPYRRFVERAYKYRPVKVVEFEMPRQQCVVYL DLKREECVHLFPAGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVT FAVDYEFAARSKPTEDYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGI LHLRAELTIRQ" CDS join(32665825..32665930,32666440..32666561, 32666643..32666706,32666946..32667222,32667655..32668468) /locus_tag="TCM_016384" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005217t2" /codon_start=1 /product="POZ/BTB containin G-protein 1 isoform 2" /protein_id="EOY24914.1" /db_xref="Phytozome:GSVIVT01027032001" /db_xref="TAIR:AT3G61600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82343" /translation="MPDTEDGVTYENQDEEAVAMIEGSPTDVGLNSNQIGNDATPSND SSWNMDCSSVLRVKTIHISSPILAAKSPFFYKLFSNGMRESEQRHVTLRIHASETALM DLLSFMYSNTLSTTIPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDL PSSVLLAEAVQPLTDAAKQFLADRYKDVTKFQEEVLNLPLAGIEAVFSSDDLQVASED AVYDSVLKWARTHYPKLEERRDVLATRLGRLIRFPYMTCRKLKKVLTCNDFDPELASK VVLEALFFKAETPYRQRAHAAEEANAPYRRFVERAYKYRPVKVVEFEMPRQQCVVYLD LKREECVHLFPAGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVTF AVDYEFAARSKPTEDYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGIL HLRAELTIRQ" gene 32669520..32670665 /locus_tag="TCM_016385" /note="dbxref CacaoGD:Thecc1EG016385" mRNA 32669520..32670665 /locus_tag="TCM_016385" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005214t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10200.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11093t00001" CDS 32669701..32670570 /locus_tag="TCM_016385" /note="paralog of Thecc1EG005214t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24917.1" /db_xref="Phytozome:POPTR_0001s10200.1" /db_xref="TAIR:AT4G23720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUQ7" /translation="MSLTVLWLVLSLYFSSSVHSLDNFSNDSLDMFLQDFAFRALVRH RPHTGALYKASLPANLSGMEVSIARIRSRTLWKKGATLSSFHIPSRTVPVPHVRRLAI VYQNLGNWSSHYYKVSGYSLITSVVGFMVFDASNTRAKSLRNISLDTMGKPISIHFSN PKFPDGMESTAARCVAFSTKGTVHFSDMILPNVCYTSDEGHFSVVVRLKRKHRPWYPW VIGVVLGSSGLIFTAYFGLVFIRLLKTKRIQAMERQADEGVIFDSRWVGSSKMPSATV TRTQPVLENGGFP" gene complement(32671287..32674574) /locus_tag="TCM_016386" /note="dbxref CacaoGD:Thecc1EG016386" mRNA complement(join(32671287..32671813,32671920..32671976, 32672177..32672189,32672963..32674574)) /locus_tag="TCM_016386" /product="6-phosphogluconate dehydrogenase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002898" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019085t1" /inference="similar to AA sequence:ricco:29841.m002898" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc4t11" mRNA complement(join(32671308..32671813,32672963..32674566)) /locus_tag="TCM_016386" /product="6-phosphogluconate dehydrogenase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29841.m002898" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019085t1" /inference="similar to AA sequence:ricco:29841.m002898" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc4t11; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc4t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11050t1" CDS complement(join(32671774..32671813,32671920..32671976, 32672177..32672189,32672963..32674415)) /locus_tag="TCM_016386" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002898; paralog of Thecc1EG019085t1" /codon_start=1 /product="6-phosphogluconate dehydrogenase family protein isoform 1" /protein_id="EOY24918.1" /db_xref="TAIR:AT5G41670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B8B1K3" /translation="MEASPALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVD ETVQRAQEEGQLPLFGQYSPREFVLSVQRPRSVVILVKAGSPVDQTIAALSDHMEPGD CIIDGGNEWYENTERRIQEVSNKGLLYLGMGVSGGEEGARNGPSLMPGGSHQAYSNIK DILEKVAAQVEDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLTN DELAEIFSEWNRGELESFLIEITSDIFRVKDELEDGYLVDKILDKTGMKGTGKWTVQQ AAELSVAAPTIAASLDCRYLSGLKEERENAAGVLKEAGLKEEVGSLAQGIDKKRLIDD VRQALYASKICSYAQGMNLLRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAY QRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLAYFDTYRRARL PANLVQAQRDLFGAHTYERTDRPGAFHTEWTKLAHGINCYRSCESLLPEYGHYGVLIR FCEKLYLVDLLQ" CDS complement(join(32671788..32671813,32672963..32674415)) /locus_tag="TCM_016386" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002898; paralog of Thecc1EG019085t1" /codon_start=1 /product="6-phosphogluconate dehydrogenase family protein isoform 2" /protein_id="EOY24919.1" /db_xref="TAIR:AT5G41670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B8B1K3" /translation="MEASPALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVD ETVQRAQEEGQLPLFGQYSPREFVLSVQRPRSVVILVKAGSPVDQTIAALSDHMEPGD CIIDGGNEWYENTERRIQEVSNKGLLYLGMGVSGGEEGARNGPSLMPGGSHQAYSNIK DILEKVAAQVEDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLTN DELAEIFSEWNRGELESFLIEITSDIFRVKDELEDGYLVDKILDKTGMKGTGKWTVQQ AAELSVAAPTIAASLDCRYLSGLKEERENAAGVLKEAGLKEEVGSLAQGIDKKRLIDD VRQALYASKICSYAQGMNLLRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAY QRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLAYFDTYRRARL PANLVQAQRDLFGAHTYERTDRPGAFHTEWTKLARFARSFIW" gene complement(32674721..32683075) /locus_tag="TCM_016387" /note="dbxref CacaoGD:Thecc1EG016387" mRNA complement(join(32674721..32675213,32675306..32675545, 32675623..32675686,32675771..32676076,32676161..32676375, 32676554..32676848,32676964..32677128,32677233..32677823, 32677969..32678055,32678140..32678460,32679127..32681272, 32681776..32681881,32682552..32683075)) /locus_tag="TCM_016387" /product="Multidrug resistance protein ABC transporter family" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016389t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10240.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g10978t2" CDS complement(join(32675086..32675213,32675306..32675545, 32675623..32675686,32675771..32676076,32676161..32676375, 32676554..32676848,32676964..32677128,32677233..32677823, 32677969..32678055,32678140..32678460,32679127..32681196)) /locus_tag="TCM_016387" /note="paralog of Thecc1EG016389t1" /codon_start=1 /product="Multidrug resistance protein ABC transporter family" /protein_id="EOY24920.1" /db_xref="Phytozome:POPTR_0001s10240.1" /db_xref="TAIR:AT3G59140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX56" /translation="MGEGLWILFCNNSNCSLETGRTCSSGFSAILNPYSCVNHAFIIS VDILLLLLALLIIIYKFSIKKITAPFQSQHFPSMPILSAIFNGILSIAYLALGIWTIY QKLDTDKTVLPLDGWLLLLFQGFTWLLLAISVSQKKLNLPSITAVKSCSIFAFLYAGF LCISSLQEAIVDKTVSIKIVLDVLSFPGSILFLSCAFKGHSLKDTDPDGNFDAFYAPL QGEEHDSNDEIGSNHNITPFAKAGLLSKMSFWWLNPILKKGKEKILENKDIPTLQEAC RAQACYSKYMDQLGKEKHRRPSGSPSMLSIIISSHWKAMFTSGFFALIKVVTLSTGPL FLRAFIEVVQGKEVFKYEAYMLTVGLLIAKCLESLSERQWFFQTRVVGIQVSSMLSAA IYQKQLKLSNAAKMTHSPGKIVSYVTVDAYRIGEFPYWFHQIWSTSLQLCLALFIVYA SVGLATIAALVTVTLTVIASYPLTKSQLEYHKKLMLAQDKRLQAIAEALANMKVLKFY AWETHFKNVIERLRKDEFKWISGILSQRGYHLVCFWSSPIIVPTVTFWTCYLLGIPLN ASNIFTFLASIRIVQEPVRLIPDVVQVFIEAKVSLDRIVKFLEAPELANRNLQQESND EKFDHSIFIRSNEISWDLKSSSKPTLRDINLEVKPGEKIAICGEVGSGKSTLLAAVLG EVPKVNGTVHVYGKIAYVSQAAWIQTGSIQENILFGAAMDPVRYEDVLEKCCLVKDLQ MLPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAQTATSLFND YVIRALSGKTVLLVSHQVDFLPAFDSILLMSAGEIIEAATYDQLLASSQKFQDLVNAH GNTIKSETDQTLYSDSGRAMTSKDVIQKVHVKEQPVGPAGEQLIKQEERETGDTGFKP YMQYLRHNKGFLYFTLAILFHVIFIVGQLIQYYWLAADIQNSQVSRMKLLTVFSVMGC ALAIFLLLRSFYVVLLGCGASESIFSTLLKSLFRAPMSFYDSTPLGRILSRVSSDLSI IDLEMAFKLSITLGTTMNTYFSLFTLAILAWPVAFVIIPMVYLTILLQRHYYASAKEL MRINGTTKSSVASHLAESIAGAMTIRAFGDGDRFFLKNMNLIDANASTNFHTFSANEW LIHCLEILCAIVLSSSALAMTLIPLGASASGLIGMALAYGLSLNVFLVVSVKFQCLLS SSVVSVERLEQYMHIPSEAPEVIEANRPPHNWPSVGRVEIYNLKVRYRPSAPLVLQGI SCIFEGGSKIGIVGRTGSGKTTLISTLFRLVEPTDGEIIIDNLNICTIGLHDLRSHLG IIPQEPTLFGGSVRYNLDPVEQHTDNEIWEVLEKCKLREAVQGKEGGLNSFVVQDGSN WSVGQRQLFCLGRALLKRSRILVLDEATASIDNATDSIIQKTIRTEFEDCTVITVAHR IPTVMDCNMVVGISDGTLVEYDEPKKLMNKKGSLFGQLVQEYWSRSANNGTSPEDWY" mobile_element complement(32678789..32678974) /note="source:scaffold_9_CACTA_0942 5205 5364" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32682955..32683622 /note="source:CACAO_Again_on_S_E15_scaffold_1 8 728" /mobile_element_type="transposon:TIR/hAT" gene 32683540..32684754 /locus_tag="TCM_016388" /note="dbxref CacaoGD:Thecc1EG016388" mRNA 32683540..32684754 /locus_tag="TCM_016388" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.67 coverage" gene complement(32683700..32691687) /locus_tag="TCM_016389" /note="dbxref CacaoGD:Thecc1EG016389" mRNA complement(join(32683700..32684752,32685259..32685379, 32685497..32685736,32685833..32685896,32686034..32686339, 32686439..32686653,32686910..32687204,32687313..32687477, 32687568..32688155,32688312..32688398,32688477..32688797, 32689143..32691687)) /locus_tag="TCM_016389" /product="Multidrug resistance-associated protein 14, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13560.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016387t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10240.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1993t7" CDS 32684088..32684369 /locus_tag="TCM_016388" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24921.1" /translation="MNGSAFVSPQRPDNTYHFSKRKLFSACPSPNERKAIEVLRVHLR LQSQKFAALKLDLRRSNYGDKNELKQTLSCHIYAATFVCQVPVDQINVV" CDS complement(join(32684644..32684752,32685259..32685379, 32685497..32685736,32685833..32685896,32686034..32686339, 32686439..32686653,32686910..32687204,32687313..32687477, 32687568..32688155,32688312..32688398,32688477..32688797, 32689143..32691209)) /locus_tag="TCM_016389" /note="paralog of Thecc1EG016387t1" /codon_start=1 /product="Multidrug resistance-associated protein 14, putative" /protein_id="EOY24922.1" /db_xref="Phytozome:POPTR_0001s10240.1" /db_xref="TAIR:AT3G59140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUQ9" /translation="MEGAWTVFCSNSESSHGVGITRSPGFSAILNPCTCINHALTISV DILLLLIFLFIVIYRLSMRKVTAAFQSEHVSSLQILSAVFNGILAIAYLVLGIWIMKT KLKTDQTILPLHEWLVVLFQGLTWLLLGSFVSLKKQKLPCISAVKSCSILGLLYAGFL CISAFRESIVDRTVSAKIILDILSFSGSILLFLCAFEGDKRKDTDLDDTIDDCYAPLP GGEPEVTDGIRTIHNVTTFGRAGFFSTMTFWWLNPLLKQGKEKILEDQDIPLLLEEHR AQMCYSRYMEQLSKEKKEGPSDLPWRLSMIFYSHWKAILVSGFFALIKVLTLSMGPLF LRAFIEVAEGKEAFKHEGYALAVGLFLTKCLESFSERQWFFRTKLVGLQVRSLLSAAI YQKQLRLSNAAKTTHSPGEIVNYVSVDAYRIGEFPSWLHQIWSTSLQLCLALCIVYYT VGLATVAALIAIIFTVLASSPLAKLLLKYQKKLMLAQDKRLKAITEALANMKVLKLYA WEKHFKNVIEGLRKEELKWISGILTQRGFQVVLFWSSPVIVPAVTFWTCYFLRIQLNA GTVFTFLASLNILQEPIRVIPDVVGVFIEAKVSLDRIVKFLEAPELNDRDLWQEHNDK DSEYSIFISSAEFSWDIDSSSKPTLRNINLVVKPREKIAICGEVGSGKSTLLASVLGE VPKVHGIVRSCGKIAYVSQTSWIQTGSIQENILFGSVMDPVRYQEVLEKCCLVEDLEM LPFRDLTEIGERGVNLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTATSLFNEY IIGALSEKTVLLVTHQVDFLPAFDSILLMAAGEIIEAATYDNLRASSQEFQNLVYAHN STLGSEIHIDHSTGRRPMTSKREIQDIYVKDQSVVPSREQLIKQEEKETGDTGLKPYR QYLSHDKCFLFFSFAAIFNMIFIIGQLMQNYWLAANVQNSNVNRLKLVTVYTVIGSAV AIFLLLRSFSVVRLGCGASQSIFSTLLKSLFRAPMSFYDSTPLGRILSRVSSDSSIVD LEVPFRFAIALGSTWNAYSSFVILAILAWPVVFVIIPLIFLSIFLQRYYLASSMELKR INGTTKSSVASHLAESIVGAMTIRAFGEGDRFFLKNLGLIDANASSDFHSFSANEWLI QRLEIPCAVVLSSLALAMTLLPFGASASGFIGMALSYGLSLNLFLVVAIQYQCVLANL MVSVERLEQYMHIPSEAPEVIEDNRPAHGWPSVGKVEICNLKVRYRRNAPLVLKGISC IFEGGHKIGIVGRTGSGKTTLISALFRLVEPSDGKIIIDDLNISTMGLHDLRSHLGII PQDPTLFSGSVRYNLDPLSEHSDYEIWEVLEKCQLREAVQEKEEGLNSLVVQDGSNWS MGQRQLICLGRALLKRSQILVLDEATASIDNATDSIIQKTIRTEFADCTVITVAHRIP SVMDSNMVLGISDGKLIEYDEPAKLMNKLGSLFGQLVKEYWSRSSHDDTYSENCNHYT GSLSSDTALVLQNASAYASFPAGSAWWTACS" mobile_element 32691628..32691774 /note="source:CACAO_M_E52882_F369_scaffold_8 1354 1485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32691698..32691778) /note="source:CACAO_M_S_E14849_F156_scaffold_2 728 808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32691702..32691789 /note="source:scaffold_1_CACTA_0011 7464 7545" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32691704..32691800) /note="source:CACAO_M_E49559_F88_scaffold_7 7609 7714" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(32692513..32694434) /locus_tag="TCM_016390" /note="dbxref CacaoGD:Thecc1EG016390" mRNA complement(join(32692513..32693555,32693631..32693715, 32693960..32694026,32694114..32694434)) /locus_tag="TCM_016390" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage" CDS complement(join(32693394..32693555,32693631..32693715, 32693960..32694026,32694114..32694384)) /locus_tag="TCM_016390" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24923.1" /translation="MKNAGNHDSPHSLPMMVDKAPRVAMEAKVLDIFELKGKEQDKGR GCKDCNCLVIDGRVFESSTMMLLRSGEVVFEGSCTSLKQEKHDVGKSSYALCLESEQL RDQILLIQGSAPHPGLKTPFSHTIAKLESLTSKMNYFRLMKNPLDFIWIWVFEKKEKR FRDGGPPEMGDIRCYRGLKLPKARSPEKAPHHMA" gene 32698078..32700787 /locus_tag="TCM_016391" /note="dbxref CacaoGD:Thecc1EG016391" mRNA join(32698078..32698267,32698470..32698544, 32698693..32698749,32698835..32698998,32699247..32699381, 32699589..32699691,32699982..32700081,32700286..32700787) /locus_tag="TCM_016391" /product="Galactose mutarotase-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010787" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005209t1" /inference="similar to AA sequence:ricco:30190.m010787" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10127t00001" CDS join(32698157..32698267,32698470..32698544, 32698693..32698749,32698835..32698998,32699247..32699381, 32699589..32699691,32699982..32700081,32700286..32700455) /locus_tag="TCM_016391" /note="dbxref ricco:30190.m010787; paralog of Thecc1EG005209t1" /codon_start=1 /product="Galactose mutarotase-like superfamily protein" /protein_id="EOY24924.1" /db_xref="TAIR:AT4G23730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q40784" /translation="MNHSGAAFDQKAAVEVTKDRSGIDQVVLRNPRGASARVSLHGGQ VLSWRTDRGEELLFTSSKAIFKPPYAVRGGIPICFPQFGQRGSLEQHGFARNRTWIID DNPPPLHPNDSSGKAYTDLLLKPSEDDSKIWPHSFEFRLRVSLTADGNLSFISRIRNI NSKPFSFSIAYHTYFSISDISEVRVEGLETLDYLDNLRQRERFTEQGDALTFESEVDR VYLSSRDIIAIFDHERKRTFMIQKEGLPDAGVWNPWEKKSRTLVDFGDDEYKQMLCVY GAAVEKPITLKPGEEWTGRLELSVVPSS" mobile_element complement(32700954..32701000) /note="source:scaffold_9_CACTA_0934 6326 6372" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32701249..32701668) /note="source:scaffold_7_CACTA_0795 2850 3297" /mobile_element_type="transposon:TIR/CACTA" gene 32705241..32709896 /locus_tag="TCM_016392" /note="dbxref CacaoGD:Thecc1EG016392" mRNA join(32705241..32705840,32706317..32707648, 32708599..32709896) /locus_tag="TCM_016392" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015329t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13590.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11029t1" mRNA join(32705241..32705840,32706320..32707648, 32708599..32709896) /locus_tag="TCM_016392" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015329t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13590.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b015837t1a2; alternateUTRof:Thecc1EG016392t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11029t1" mRNA join(32705991..32707648,32708599..32709577) /locus_tag="TCM_016392" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015329t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13590.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1111t3; alternateUTRof:Thecc1EG016392t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11029t1" CDS join(32706415..32707648,32708599..32709245) /locus_tag="TCM_016392" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015329t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY24925.1" /db_xref="Phytozome:POPTR_0003s13590.1" /db_xref="TAIR:AT4G23740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCN2" /translation="MEALHVSSWICLLGLVLLQGNADLIEDKQALLDFVNNLRHSRSL NWNETSPVCNNWTGVTCNADGSRITAVRLPGIGLHGPIPANTISRLSALQILSLRSNG ISGHFPSDFSNLRNLSFLYLQYNNFSGPLPVDFSVWKNLSIINLSNNRFNGSIPRSLS NLTHLEALNLANNSLCGEIPDLNLPSLQHINLSNNNLTGGVPKSLLRFPSSSFGGNNI SSESVPPQTSPYVAPSSEPYPASKKSGRLGETALLGIIIAACVLGIVGFAFLLVVCCS RRKSDDVYSRKLQKGEMSPEKVVSRSQDANNRLFFFEGCNYTFDLEDLLRASAEVLGK GTFGISYKAVLEDATTVVVKRLKEVSVGKRDFEQQMEVVGSIRHANVVELKAYYYSKD ERLMVYDYYNQGSVSSILHGKRGEDRIPLGWDARMKTAIGAARGIARIHMENGGKFVH GNIKSSNIFLNSEQYGCVSDLGLSTIMSPLAPPISRAAGYRAPEVTDTRKAMQPSDVY SFGVVLLELLTGKSPIHTTGGDEIVHLVRWVHSVVREEWTAEVFDIELMRYPNIEEEM VEMLQIAMTCVVRMPDQRPKMPELVKMLENVRHIESENRPSSGNRSESSTPPAAVIGR ES" CDS join(32706415..32707648,32708599..32709245) /locus_tag="TCM_016392" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015329t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY24926.1" /db_xref="Phytozome:POPTR_0003s13590.1" /db_xref="TAIR:AT4G23740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCN2" /translation="MEALHVSSWICLLGLVLLQGNADLIEDKQALLDFVNNLRHSRSL NWNETSPVCNNWTGVTCNADGSRITAVRLPGIGLHGPIPANTISRLSALQILSLRSNG ISGHFPSDFSNLRNLSFLYLQYNNFSGPLPVDFSVWKNLSIINLSNNRFNGSIPRSLS NLTHLEALNLANNSLCGEIPDLNLPSLQHINLSNNNLTGGVPKSLLRFPSSSFGGNNI SSESVPPQTSPYVAPSSEPYPASKKSGRLGETALLGIIIAACVLGIVGFAFLLVVCCS RRKSDDVYSRKLQKGEMSPEKVVSRSQDANNRLFFFEGCNYTFDLEDLLRASAEVLGK GTFGISYKAVLEDATTVVVKRLKEVSVGKRDFEQQMEVVGSIRHANVVELKAYYYSKD ERLMVYDYYNQGSVSSILHGKRGEDRIPLGWDARMKTAIGAARGIARIHMENGGKFVH GNIKSSNIFLNSEQYGCVSDLGLSTIMSPLAPPISRAAGYRAPEVTDTRKAMQPSDVY SFGVVLLELLTGKSPIHTTGGDEIVHLVRWVHSVVREEWTAEVFDIELMRYPNIEEEM VEMLQIAMTCVVRMPDQRPKMPELVKMLENVRHIESENRPSSGNRSESSTPPAAVIGR ES" CDS join(32706415..32707648,32708599..32709245) /locus_tag="TCM_016392" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015329t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY24927.1" /db_xref="Phytozome:POPTR_0003s13590.1" /db_xref="TAIR:AT4G23740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCN2" /translation="MEALHVSSWICLLGLVLLQGNADLIEDKQALLDFVNNLRHSRSL NWNETSPVCNNWTGVTCNADGSRITAVRLPGIGLHGPIPANTISRLSALQILSLRSNG ISGHFPSDFSNLRNLSFLYLQYNNFSGPLPVDFSVWKNLSIINLSNNRFNGSIPRSLS NLTHLEALNLANNSLCGEIPDLNLPSLQHINLSNNNLTGGVPKSLLRFPSSSFGGNNI SSESVPPQTSPYVAPSSEPYPASKKSGRLGETALLGIIIAACVLGIVGFAFLLVVCCS RRKSDDVYSRKLQKGEMSPEKVVSRSQDANNRLFFFEGCNYTFDLEDLLRASAEVLGK GTFGISYKAVLEDATTVVVKRLKEVSVGKRDFEQQMEVVGSIRHANVVELKAYYYSKD ERLMVYDYYNQGSVSSILHGKRGEDRIPLGWDARMKTAIGAARGIARIHMENGGKFVH GNIKSSNIFLNSEQYGCVSDLGLSTIMSPLAPPISRAAGYRAPEVTDTRKAMQPSDVY SFGVVLLELLTGKSPIHTTGGDEIVHLVRWVHSVVREEWTAEVFDIELMRYPNIEEEM VEMLQIAMTCVVRMPDQRPKMPELVKMLENVRHIESENRPSSGNRSESSTPPAAVIGR ES" gene 32710764..32714063 /locus_tag="TCM_016393" /note="dbxref CacaoGD:Thecc1EG016393" mRNA join(32710764..32710770,32710929..32711008, 32711760..32711887,32712952..32713056,32713375..32713529, 32713885..32714063) /locus_tag="TCM_016393" /product="Ubiquitin carrier protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015334t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028729001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10262t1" mRNA join(32710938..32711008,32711760..32711887, 32712952..32713056,32713375..>32713517) /locus_tag="TCM_016393" /product="Ubiquitin carrier protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015334t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028729001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g17809t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10262t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1047t4" CDS join(32710939..32711008,32711760..32711887, 32712952..32713056,32713375..32713518) /locus_tag="TCM_016393" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015334t1" /codon_start=1 /product="Ubiquitin carrier protein isoform 1" /protein_id="EOY24928.1" /db_xref="Phytozome:GSVIVT01028729001" /db_xref="TAIR:AT1G64230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDK6" /translation="MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSP YAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKV LLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG" CDS join(32710939..32711008,32711760..32711887, 32712952..32713056,32713375..>32713515) /locus_tag="TCM_016393" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015334t1" /codon_start=1 /product="Ubiquitin carrier protein isoform 2" /protein_id="EOY24929.1" /db_xref="Phytozome:GSVIVT01028729001" /db_xref="TAIR:AT1G64230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDK6" /translation="MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSP YAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKV LLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG" gene complement(32714099..32716127) /locus_tag="TCM_016394" /note="dbxref CacaoGD:Thecc1EG016394" mRNA complement(join(32714099..32715178,32715280..32715347, 32715587..32716127)) /locus_tag="TCM_016394" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.59 coverage" CDS complement(join(32714954..32715178,32715280..32715347, 32715587..32715605)) /locus_tag="TCM_016394" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24930.1" /translation="MLEPGFCKILNTKAKTLAGEMVQSSGRTDRTKKKPKREGEAQVG FCGHRFSSQRGWPRIVNSTQVFMAKLFVMLCRKEEKHQDKNKKSKFERCAFIHMGDFS P" mobile_element complement(32719660..32719727) /note="source:CACAO_PIF_E144_scaffold_10 5997 6063" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(32719829..32719889) /note="source:CACAO_PIF_E144_scaffold_10 5996 6055" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 32720904..32720970 /note="source:INTACT745_F320_scaffold_4-int 4494 4561" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32722218..32722836) /locus_tag="TCM_016395" /note="dbxref CacaoGD:Thecc1EG016395" mRNA complement(join(32722218..32722544,32722672..32722836)) /locus_tag="TCM_016395" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc3398t1" CDS complement(join(32722335..32722544,32722672..32722815)) /locus_tag="TCM_016395" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24931.1" /translation="MGTYNVDTWQLVPTKQEDPMGRANRDADSAKRFLLEIRDSGHVT PETRGISVTFLKPEIELQEAVIQVGKFTILPYPFVILYLGLTWQATLILAQFFFLLFF FFICYCFNDPAGCRL" gene 32723266..32725171 /locus_tag="TCM_016396" /note="dbxref CacaoGD:Thecc1EG016396" mRNA 32723266..32725171 /locus_tag="TCM_016396" /product="Cytokinin response factor 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400021774" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015336t1" /inference="similar to AA sequence:frave:gene32028" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10183t1" CDS 32723786..32724811 /locus_tag="TCM_016396" /note="dbxref frave:gene32028; paralog of Thecc1EG015336t1" /codon_start=1 /product="Cytokinin response factor 2, putative" /protein_id="EOY24932.1" /db_xref="TAIR:AT4G23750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCN4" /translation="MDHCPVPTIKYTEHRNQTKLLTPLLNVRLENQPEMKPRIVRISV TDADATDSSSDEEEEQTTRFRSRNRVKKFVNEITIESSCPTQNDAVWRSKSSSLSKIP RKRPAAVAEAKAKSPAKVPAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEE AAMVYDNAAIQLRGPDALTNFTTPPQKLVQDNNSQKPLSSSDYNSGEESHNTNLCSPT SVLRCPSLSTDEVDSQSVKESREIGSEPQDALDESCCISGENFSGFSDYSSFFPNDIF SSVPDLFDDNTSFHEAFMKDDFGNGFLSSGEDFEFGFGSFSNWQHVDDHFQDIGDLFA TDSLLAV" gene complement(32728567..32729257) /locus_tag="TCM_016397" /note="dbxref CacaoGD:Thecc1EG016397" mRNA complement(32728567..32729257) /locus_tag="TCM_016397" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(32728653..32728874) /locus_tag="TCM_016397" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24933.1" /translation="MLMWISENEPRLSKMEGPYQADEMAKISGTTRITAVPLGENNQT VMAELEIKGWGPKGGGTGGGGLRGAGTGF" gene 32730605..32732509 /locus_tag="TCM_016398" /note="dbxref CacaoGD:Thecc1EG016398" mRNA join(32730605..32731001,32731485..32732509) /locus_tag="TCM_016398" /product="Cox19-like CHCH family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g02470.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g17803t00001" CDS join(32730867..32731001,32731485..32731553) /locus_tag="TCM_016398" /codon_start=1 /product="Cox19-like CHCH family protein" /protein_id="EOY24934.1" /translation="MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLD KKVKKFSLDNQDQQDTDSVSKKN" gene complement(32732944..32733288) /locus_tag="TCM_016399" /note="dbxref CacaoGD:Thecc1EG016399" mRNA complement(join(32732944..32733065,32733159..32733288)) /locus_tag="TCM_016399" /product="Arabinogalactan protein 22" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028741001" /inference="similar to AA sequence:ricco:30190.m010793" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13890t00001" CDS complement(join(32732968..32733065,32733159..32733279)) /locus_tag="TCM_016399" /note="dbxref ricco:30190.m010793" /codon_start=1 /product="Arabinogalactan protein 22" /protein_id="EOY24935.1" /translation="MAVSRVSLAAVFVALVFAMIALPAAVQAQSSAPAPAPTSDGTSI DQGIAYVLMLVALVLTYLIHAADFCFSF" gene complement(32736116..32737503) /locus_tag="TCM_016400" /note="dbxref CacaoGD:Thecc1EG016400" mRNA complement(join(32736116..32737255,32737392..32737503)) /locus_tag="TCM_016400" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13650.1" /inference="similar to AA sequence:ricco:30190.m010795" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11062t1" CDS complement(32736789..32737058) /locus_tag="TCM_016400" /note="dbxref ricco:30190.m010795" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24936.1" /translation="MSGTSCPNASYAMAGLRPNGNHHQAKRTDKCCYFQMPLHYPRYK KSDYENMPERQLDCLLNEYGLPVIGDVNQKRKFAMGAFLWPSQNE" gene complement(32738251..32741681) /locus_tag="TCM_016401" /note="dbxref CacaoGD:Thecc1EG016401" mRNA complement(join(32738251..32738730,32738994..32739110, 32739211..32739495,32741652..32741681)) /locus_tag="TCM_016401" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1569t1" CDS complement(join(32738410..32738730,32738994..32739005)) /locus_tag="TCM_016401" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24937.1" /translation="MILKILSDSWAAAIELDESQYLERWVENILSICGKCPLLEPEPL YNILILLQHQQLTSESTLTIELSSQSFSKGKEHLIDNIHEQKLICRLAMLLLYLLNVK FIYDFSSE" gene 32742306..32745750 /locus_tag="TCM_016402" /note="dbxref CacaoGD:Thecc1EG016402" mRNA join(32742306..32742609,32742736..32742833, 32742953..32745092,32745222..32745734) /locus_tag="TCM_016402" /product="Kinase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010797" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005196t2" /inference="similar to AA sequence:frave:gene32034" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1637t1" mRNA join(32742413..32742609,32742736..32742893, 32742958..32745092,32745222..32745750) /locus_tag="TCM_016402" /product="Kinase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010797" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005196t2" /inference="similar to AA sequence:frave:gene32034" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1511t1; alternateUTRof:Thecc1EG016402t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1637t1" mRNA join(32742413..32742609,32742736..32745092, 32745222..>32745241) /locus_tag="TCM_016402" /product="Kinase family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30190.m010797" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005196t2" /inference="similar to AA sequence:frave:gene32034" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.27 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1361t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1637t1" CDS join(32743073..32745092,32745222..32745367) /locus_tag="TCM_016402" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene32034; paralog of Thecc1EG005196t2" /codon_start=1 /product="Kinase family protein, putative isoform 1" /protein_id="EOY24938.1" /db_xref="TAIR:AT1G64300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944S4" /translation="MEQFRQIGEVLGSLRALMVLQDEVQINRRQCCLLFDIFCLAFNT IAEEIRLNLKLEEKNTKWHALDHPLRELHKIFKEGELYVKQCMDKKDWRVKAIYLHQN KDCVDNHIHNLLCHFPVVIEAIETAGEIAGLDQDEMQRRRVALARKYDKEWNDPKLFQ FRFGKQYLVPRDICSRFESAWREDRWNLVEALKDKKNLDTATKNEQRLAGSLIKKIIG SEAYKGKLFPSSILYGGDYLVRRRLGAQYKEIQWLGDSFVLRHFFGEVEPSCSEISTL LSLSHPNILQYLCGFYDEEKKEVMLVLELMNKDLSCYMKENCGSRRRILFSFPVVVDL MLQIARGMEYLHSQKIRHGELNPSNIFLKARNNTEGFFHLKISGYGLSPVKTRSSPNS SPKPIEPNPFIWYAPEVLLEQEQPGNITISKYTEKADVYSFGMLCFQLLTGKVPFEDG HLQGEKMSRNIRAGERPLFPYTAPKYLVNLTKRCWHTDPNQRPSFSSISRILRYIKKY LVMNPDRDQPEMQSPVADYCEIEAWFLKKFTANGTFSPLSVAQIPFQMFAYRLAEKDK SILNTQDKNGELASEAASICRDENNSTVEDPLIAASETKSVSSDVKSVCSDIKSVYSD IRSVCSEIPERRSINFDTPQKRSISTKIPEKKKMLLMKKNTNVKAKNFTGTPNAQSPR PPTLNRGHSVRINRESRSPLITSSVSRGRQRAAAGHTSD" CDS join(32743073..32745092,32745222..32745367) /locus_tag="TCM_016402" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene32034; paralog of Thecc1EG005196t2" /codon_start=1 /product="Kinase family protein, putative isoform 1" /protein_id="EOY24939.1" /db_xref="TAIR:AT1G64300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944S4" /translation="MEQFRQIGEVLGSLRALMVLQDEVQINRRQCCLLFDIFCLAFNT IAEEIRLNLKLEEKNTKWHALDHPLRELHKIFKEGELYVKQCMDKKDWRVKAIYLHQN KDCVDNHIHNLLCHFPVVIEAIETAGEIAGLDQDEMQRRRVALARKYDKEWNDPKLFQ FRFGKQYLVPRDICSRFESAWREDRWNLVEALKDKKNLDTATKNEQRLAGSLIKKIIG SEAYKGKLFPSSILYGGDYLVRRRLGAQYKEIQWLGDSFVLRHFFGEVEPSCSEISTL LSLSHPNILQYLCGFYDEEKKEVMLVLELMNKDLSCYMKENCGSRRRILFSFPVVVDL MLQIARGMEYLHSQKIRHGELNPSNIFLKARNNTEGFFHLKISGYGLSPVKTRSSPNS SPKPIEPNPFIWYAPEVLLEQEQPGNITISKYTEKADVYSFGMLCFQLLTGKVPFEDG HLQGEKMSRNIRAGERPLFPYTAPKYLVNLTKRCWHTDPNQRPSFSSISRILRYIKKY LVMNPDRDQPEMQSPVADYCEIEAWFLKKFTANGTFSPLSVAQIPFQMFAYRLAEKDK SILNTQDKNGELASEAASICRDENNSTVEDPLIAASETKSVSSDVKSVCSDIKSVYSD IRSVCSEIPERRSINFDTPQKRSISTKIPEKKKMLLMKKNTNVKAKNFTGTPNAQSPR PPTLNRGHSVRINRESRSPLITSSVSRGRQRAAAGHTSD" CDS join(32743073..32745092,32745222..>32745241) /locus_tag="TCM_016402" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene32034; paralog of Thecc1EG005196t2" /codon_start=1 /product="Kinase family protein, putative isoform 3" /protein_id="EOY24940.1" /db_xref="TAIR:AT1G64300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944S4" /translation="MEQFRQIGEVLGSLRALMVLQDEVQINRRQCCLLFDIFCLAFNT IAEEIRLNLKLEEKNTKWHALDHPLRELHKIFKEGELYVKQCMDKKDWRVKAIYLHQN KDCVDNHIHNLLCHFPVVIEAIETAGEIAGLDQDEMQRRRVALARKYDKEWNDPKLFQ FRFGKQYLVPRDICSRFESAWREDRWNLVEALKDKKNLDTATKNEQRLAGSLIKKIIG SEAYKGKLFPSSILYGGDYLVRRRLGAQYKEIQWLGDSFVLRHFFGEVEPSCSEISTL LSLSHPNILQYLCGFYDEEKKEVMLVLELMNKDLSCYMKENCGSRRRILFSFPVVVDL MLQIARGMEYLHSQKIRHGELNPSNIFLKARNNTEGFFHLKISGYGLSPVKTRSSPNS SPKPIEPNPFIWYAPEVLLEQEQPGNITISKYTEKADVYSFGMLCFQLLTGKVPFEDG HLQGEKMSRNIRAGERPLFPYTAPKYLVNLTKRCWHTDPNQRPSFSSISRILRYIKKY LVMNPDRDQPEMQSPVADYCEIEAWFLKKFTANGTFSPLSVAQIPFQMFAYRLAEKDK SILNTQDKNGELASEAASICRDENNSTVEDPLIAASETKSVSSDVKSVCSDIKSVYSD IRSVCSEIPERRSINFDTPQKRSISTKIPEKKKMLLMKKNTNVKAKNFTGTPNAQS" gene complement(32745745..32754079) /locus_tag="TCM_016403" /note="dbxref CacaoGD:Thecc1EG016403" mRNA complement(join(32745745..32746703,32746845..32746904, 32747013..32747330,32747829..32747975,32748887..32749709, 32750504..32750661,32751169..32752716,32753412..32753656)) /locus_tag="TCM_016403" /product="Ubiquitin ligase protein cop1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005195t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s10330.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc652t2; alternateUTRof:Thecc1EG016403t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc652t9" mRNA complement(join(32745745..32746703,32746845..32746904, 32747013..32747330,32747829..32747975,32748887..32749709, 32750504..32750661,32751169..32752716,32753407..32753656)) /locus_tag="TCM_016403" /product="Ubiquitin ligase protein cop1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005195t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s10330.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc652t11; alternateUTRof:Thecc1EG016403t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc652t9" mRNA complement(join(32745745..32746703,32746845..32747330, 32747829..32747975,32748887..32749709,32750504..32750661, 32751169..32752716,32753407..32753656)) /locus_tag="TCM_016403" /product="Ubiquitin ligase protein cop1, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005195t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s10330.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc652t6; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc652t9" mRNA complement(join(32745745..32746703,32746845..32746904, 32747013..32747330,32747829..32747975,32748887..32749709, 32750504..32750558,32751069..32752716,32753407..32753656)) /locus_tag="TCM_016403" /product="Ubiquitin ligase protein cop1, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005195t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s10330.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc649t11; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc652t9" mRNA complement(join(32745745..32746703,32746845..32747330, 32747829..32747975,32748887..32749709,32750504..32750558, 32751069..32752716,32753407..32753656)) /locus_tag="TCM_016403" /product="Ubiquitin ligase protein cop1, putative isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10330.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10330.1" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc649t6; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc652t9" mRNA complement(join(32745745..32746703,32746845..32746904, 32747013..32747330,32747829..32747975,32748887..32749709, 32750504..32750558,32751069..32752818,32753407..32753656)) /locus_tag="TCM_016403" /product="Ubiquitin ligase protein cop1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005195t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s10330.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc649t5; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc652t9" mRNA complement(join(32745745..32746703,32746845..32746904, 32747013..32747330,32747829..32747975,32748887..32749709, 32750504..32750661,32751169..32752817)) /locus_tag="TCM_016403" /product="Ubiquitin ligase protein cop1, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005195t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s10330.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc652t4; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc652t9" mRNA complement(join(32745759..32746703,32746845..32746904, 32747013..32747330,32747829..32747975,32748887..32749709, 32750504..32750661,32751169..32752716,32753795..32754079)) /locus_tag="TCM_016403" /product="Ubiquitin ligase protein cop1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005195t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s10330.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc652t9" CDS complement(join(32746512..32746703,32746845..32746904, 32747013..32747330,32747829..32747975,32748887..32749709, 32750504..32750661,32751169..32752722)) /locus_tag="TCM_016403" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG005195t2" /codon_start=1 /product="Ubiquitin ligase protein cop1, putative isoform 6" /protein_id="EOY24946.1" /db_xref="Phytozome:POPTR_0001s10330.1" /db_xref="TAIR:AT4G11110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCP1" /translation="MQQKRNILLNEVCIYSMDGGLSDEVAPIDAAEGTHLQGKEVEYL MKPDNCNMLESREMVIPDEVNTIESSFHVLGNMLEGKKVNRSIGPVNVSEHGCSSPRT IDDANDMVEELTVRNYNGSNLPMVGTSNNRERMQMRQNHWQHFYQLVGGSGSGGSCGN RDNSQAMPSMSQDVGYASFPEFLGQKPLSDGRNEATEQLMSGDIIEVSGSQLSHGGIK TKILSKSGFSEFFVKTTLKGKGVICRGPSHDASRVEPRDQNNTKSTEGTMVAPTAPLK AAGSPVVASNTSLILVNKAVMTSSSYGIMGPRVGECDRDGMNLREWLKAQCHKAKKSE CLYIFKQIVDLVDYSHSQGVILHDLCPSFFKLLQPKQVKYIGSGVQKGLLDTVLDKDF PPSENFLIRRRPMEQGMISSVGLCAKKQRFNENKNSTRWPLFHSRAGPKIETVNNTQF SHNESSEHCFNTELSNSGSPYASNSAQQQSVSVNEQLEEKWYASPEELNEGVCTISSN IYSLGVLLFELLGHFESERAHAAAMLDLRHRIFPPTFLSENLKEAGFCLRLLHPEPSL RPTTRDILQSEVINGFQEVIAEELSSSIIQDDTESELLLHFLSLLKEQQQKHASKLME DISCLEADIEEVERRRCSRKPLTYSSCNVRECRHLGKEPPISEVHSGLYQLSSASEMR LMRNINHLETAYFSMRSRVQFRETDSMTRPDKDLLENRENWHLAQNNEEIPNPTDSLG AFFDGLCKYARYSKFEVCGILRSGEFNNSANVICSLSFDRDEDYFAAAGVSKKIKIFE FNALFNDSVDIHYPVIEMSNKSKLSCVCWNNYIKNYLASTDYDGLVKLWDASTGQAVS HFIEHEKRAWSVDFSRVYPTKLASGSDDCSVKLWSISEKSCLGTIRNIANVCCVQFSA HSTHLLAFGSADYKTYCYDLRNTRAPWCVLGGHDKAVSYVKFLDSETVVTASTDNTLK LWDLNKTSSAGLSLNACSLTFRGHTNEKNFVGLSAADGYIACGSETNEVCAYYRSLPM PITSHKFGSIDPISGKETDDDNGLFVSSVCWRGKSDMVVAANSSGCIKVLQMV" CDS complement(join(32746512..32746703,32746845..32746904, 32747013..32747330,32747829..32747975,32748887..32749709, 32750504..32750558,32751069..32752722)) /locus_tag="TCM_016403" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005195t2" /codon_start=1 /product="Ubiquitin ligase protein cop1, putative isoform 2" /protein_id="EOY24942.1" /db_xref="Phytozome:POPTR_0001s10330.1" /db_xref="TAIR:AT4G11110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCP1" /translation="MQQKRNILLNEVCIYSMDGGLSDEVAPIDAAEGTHLQGKEVEYL MKPDNCNMLESREMVIPDEVNTIESSFHVLGNMLEGKKVNRSIGPVNVSEHGCSSPRT IDDANDMVEELTVRNYNGSNLPMVGTSNNRERMQMRQNHWQHFYQLVGGSGSGGSCGN RDNSQAMPSMSQDVGYASFPEFLGQKPLSDGRNEATEQLMSGDIIEVSGSQLSHGGIK TKILSKSGFSEFFVKTTLKGKGVICRGPSHDASRVEPRDQNNTKSTEGTMVAPTAPLK AAGSPVVASNTSLILVNKAVMTSSSYGIMGPRVGECDRDGMNLREWLKAQCHKAKKSE CLYIFKQIVDLVDYSHSQGVILHDLCPSFFKLLQPKQVKYIGSGVQKGLLDTVLDKDF PPSENFLIRRRPMEQGMISSVGLCAKKQRFNENKNSTRWPLFHSRAGPKIETVNNTQF SHNESSEHCFNTELSNSGSPYASNSAQQQSVSVNEQLEEKWYASPEELNEGVCTISSN IYSLGVLLFEVQEPIMLNLHFCHEIFMMASMSYFLFYKACWLKSGFCLRLLHPEPSLR PTTRDILQSEVINGFQEVIAEELSSSIIQDDTESELLLHFLSLLKEQQQKHASKLMED ISCLEADIEEVERRRCSRKPLTYSSCNVRECRHLGKEPPISEVHSGLYQLSSASEMRL MRNINHLETAYFSMRSRVQFRETDSMTRPDKDLLENRENWHLAQNNEEIPNPTDSLGA FFDGLCKYARYSKFEVCGILRSGEFNNSANVICSLSFDRDEDYFAAAGVSKKIKIFEF NALFNDSVDIHYPVIEMSNKSKLSCVCWNNYIKNYLASTDYDGLVKLWDASTGQAVSH FIEHEKRAWSVDFSRVYPTKLASGSDDCSVKLWSISEKSCLGTIRNIANVCCVQFSAH STHLLAFGSADYKTYCYDLRNTRAPWCVLGGHDKAVSYVKFLDSETVVTASTDNTLKL WDLNKTSSAGLSLNACSLTFRGHTNEKNFVGLSAADGYIACGSETNEVCAYYRSLPMP ITSHKFGSIDPISGKETDDDNGLFVSSVCWRGKSDMVVAANSSGCIKVLQMV" CDS complement(join(32746512..32746703,32746845..32746904, 32747013..32747330,32747829..32747975,32748887..32749709, 32750504..32750661,32751169..32752674)) /locus_tag="TCM_016403" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005195t2" /codon_start=1 /product="Ubiquitin ligase protein cop1, putative isoform 1" /protein_id="EOY24941.1" /db_xref="Phytozome:POPTR_0001s10330.1" /db_xref="TAIR:AT4G11110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCP1" /translation="MDGGLSDEVAPIDAAEGTHLQGKEVEYLMKPDNCNMLESREMVI PDEVNTIESSFHVLGNMLEGKKVNRSIGPVNVSEHGCSSPRTIDDANDMVEELTVRNY NGSNLPMVGTSNNRERMQMRQNHWQHFYQLVGGSGSGGSCGNRDNSQAMPSMSQDVGY ASFPEFLGQKPLSDGRNEATEQLMSGDIIEVSGSQLSHGGIKTKILSKSGFSEFFVKT TLKGKGVICRGPSHDASRVEPRDQNNTKSTEGTMVAPTAPLKAAGSPVVASNTSLILV NKAVMTSSSYGIMGPRVGECDRDGMNLREWLKAQCHKAKKSECLYIFKQIVDLVDYSH SQGVILHDLCPSFFKLLQPKQVKYIGSGVQKGLLDTVLDKDFPPSENFLIRRRPMEQG MISSVGLCAKKQRFNENKNSTRWPLFHSRAGPKIETVNNTQFSHNESSEHCFNTELSN SGSPYASNSAQQQSVSVNEQLEEKWYASPEELNEGVCTISSNIYSLGVLLFELLGHFE SERAHAAAMLDLRHRIFPPTFLSENLKEAGFCLRLLHPEPSLRPTTRDILQSEVINGF QEVIAEELSSSIIQDDTESELLLHFLSLLKEQQQKHASKLMEDISCLEADIEEVERRR CSRKPLTYSSCNVRECRHLGKEPPISEVHSGLYQLSSASEMRLMRNINHLETAYFSMR SRVQFRETDSMTRPDKDLLENRENWHLAQNNEEIPNPTDSLGAFFDGLCKYARYSKFE VCGILRSGEFNNSANVICSLSFDRDEDYFAAAGVSKKIKIFEFNALFNDSVDIHYPVI EMSNKSKLSCVCWNNYIKNYLASTDYDGLVKLWDASTGQAVSHFIEHEKRAWSVDFSR VYPTKLASGSDDCSVKLWSISEKSCLGTIRNIANVCCVQFSAHSTHLLAFGSADYKTY CYDLRNTRAPWCVLGGHDKAVSYVKFLDSETVVTASTDNTLKLWDLNKTSSAGLSLNA CSLTFRGHTNEKNFVGLSAADGYIACGSETNEVCAYYRSLPMPITSHKFGSIDPISGK ETDDDNGLFVSSVCWRGKSDMVVAANSSGCIKVLQMV" CDS complement(join(32746512..32746703,32746845..32746904, 32747013..32747330,32747829..32747975,32748887..32749709, 32750504..32750661,32751169..32752674)) /locus_tag="TCM_016403" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005195t2" /codon_start=1 /product="Ubiquitin ligase protein cop1, putative isoform 1" /protein_id="EOY24943.1" /db_xref="Phytozome:POPTR_0001s10330.1" /db_xref="TAIR:AT4G11110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCP1" /translation="MDGGLSDEVAPIDAAEGTHLQGKEVEYLMKPDNCNMLESREMVI PDEVNTIESSFHVLGNMLEGKKVNRSIGPVNVSEHGCSSPRTIDDANDMVEELTVRNY NGSNLPMVGTSNNRERMQMRQNHWQHFYQLVGGSGSGGSCGNRDNSQAMPSMSQDVGY ASFPEFLGQKPLSDGRNEATEQLMSGDIIEVSGSQLSHGGIKTKILSKSGFSEFFVKT TLKGKGVICRGPSHDASRVEPRDQNNTKSTEGTMVAPTAPLKAAGSPVVASNTSLILV NKAVMTSSSYGIMGPRVGECDRDGMNLREWLKAQCHKAKKSECLYIFKQIVDLVDYSH SQGVILHDLCPSFFKLLQPKQVKYIGSGVQKGLLDTVLDKDFPPSENFLIRRRPMEQG MISSVGLCAKKQRFNENKNSTRWPLFHSRAGPKIETVNNTQFSHNESSEHCFNTELSN SGSPYASNSAQQQSVSVNEQLEEKWYASPEELNEGVCTISSNIYSLGVLLFELLGHFE SERAHAAAMLDLRHRIFPPTFLSENLKEAGFCLRLLHPEPSLRPTTRDILQSEVINGF QEVIAEELSSSIIQDDTESELLLHFLSLLKEQQQKHASKLMEDISCLEADIEEVERRR CSRKPLTYSSCNVRECRHLGKEPPISEVHSGLYQLSSASEMRLMRNINHLETAYFSMR SRVQFRETDSMTRPDKDLLENRENWHLAQNNEEIPNPTDSLGAFFDGLCKYARYSKFE VCGILRSGEFNNSANVICSLSFDRDEDYFAAAGVSKKIKIFEFNALFNDSVDIHYPVI EMSNKSKLSCVCWNNYIKNYLASTDYDGLVKLWDASTGQAVSHFIEHEKRAWSVDFSR VYPTKLASGSDDCSVKLWSISEKSCLGTIRNIANVCCVQFSAHSTHLLAFGSADYKTY CYDLRNTRAPWCVLGGHDKAVSYVKFLDSETVVTASTDNTLKLWDLNKTSSAGLSLNA CSLTFRGHTNEKNFVGLSAADGYIACGSETNEVCAYYRSLPMPITSHKFGSIDPISGK ETDDDNGLFVSSVCWRGKSDMVVAANSSGCIKVLQMV" CDS complement(join(32746512..32746703,32746845..32746904, 32747013..32747330,32747829..32747975,32748887..32749709, 32750504..32750661,32751169..32752674)) /locus_tag="TCM_016403" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG005195t2" /codon_start=1 /product="Ubiquitin ligase protein cop1, putative isoform 1" /protein_id="EOY24944.1" /db_xref="Phytozome:POPTR_0001s10330.1" /db_xref="TAIR:AT4G11110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCP1" /translation="MDGGLSDEVAPIDAAEGTHLQGKEVEYLMKPDNCNMLESREMVI PDEVNTIESSFHVLGNMLEGKKVNRSIGPVNVSEHGCSSPRTIDDANDMVEELTVRNY NGSNLPMVGTSNNRERMQMRQNHWQHFYQLVGGSGSGGSCGNRDNSQAMPSMSQDVGY ASFPEFLGQKPLSDGRNEATEQLMSGDIIEVSGSQLSHGGIKTKILSKSGFSEFFVKT TLKGKGVICRGPSHDASRVEPRDQNNTKSTEGTMVAPTAPLKAAGSPVVASNTSLILV NKAVMTSSSYGIMGPRVGECDRDGMNLREWLKAQCHKAKKSECLYIFKQIVDLVDYSH SQGVILHDLCPSFFKLLQPKQVKYIGSGVQKGLLDTVLDKDFPPSENFLIRRRPMEQG MISSVGLCAKKQRFNENKNSTRWPLFHSRAGPKIETVNNTQFSHNESSEHCFNTELSN SGSPYASNSAQQQSVSVNEQLEEKWYASPEELNEGVCTISSNIYSLGVLLFELLGHFE SERAHAAAMLDLRHRIFPPTFLSENLKEAGFCLRLLHPEPSLRPTTRDILQSEVINGF QEVIAEELSSSIIQDDTESELLLHFLSLLKEQQQKHASKLMEDISCLEADIEEVERRR CSRKPLTYSSCNVRECRHLGKEPPISEVHSGLYQLSSASEMRLMRNINHLETAYFSMR SRVQFRETDSMTRPDKDLLENRENWHLAQNNEEIPNPTDSLGAFFDGLCKYARYSKFE VCGILRSGEFNNSANVICSLSFDRDEDYFAAAGVSKKIKIFEFNALFNDSVDIHYPVI EMSNKSKLSCVCWNNYIKNYLASTDYDGLVKLWDASTGQAVSHFIEHEKRAWSVDFSR VYPTKLASGSDDCSVKLWSISEKSCLGTIRNIANVCCVQFSAHSTHLLAFGSADYKTY CYDLRNTRAPWCVLGGHDKAVSYVKFLDSETVVTASTDNTLKLWDLNKTSSAGLSLNA CSLTFRGHTNEKNFVGLSAADGYIACGSETNEVCAYYRSLPMPITSHKFGSIDPISGK ETDDDNGLFVSSVCWRGKSDMVVAANSSGCIKVLQMV" CDS complement(join(32746512..32746703,32746845..32747330, 32747829..32747975,32748887..32749709,32750504..32750661, 32751169..32752674)) /locus_tag="TCM_016403" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG005195t2" /codon_start=1 /product="Ubiquitin ligase protein cop1, putative isoform 7" /protein_id="EOY24947.1" /db_xref="Phytozome:POPTR_0001s10330.1" /db_xref="TAIR:AT4G11110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCP1" /translation="MDGGLSDEVAPIDAAEGTHLQGKEVEYLMKPDNCNMLESREMVI PDEVNTIESSFHVLGNMLEGKKVNRSIGPVNVSEHGCSSPRTIDDANDMVEELTVRNY NGSNLPMVGTSNNRERMQMRQNHWQHFYQLVGGSGSGGSCGNRDNSQAMPSMSQDVGY ASFPEFLGQKPLSDGRNEATEQLMSGDIIEVSGSQLSHGGIKTKILSKSGFSEFFVKT TLKGKGVICRGPSHDASRVEPRDQNNTKSTEGTMVAPTAPLKAAGSPVVASNTSLILV NKAVMTSSSYGIMGPRVGECDRDGMNLREWLKAQCHKAKKSECLYIFKQIVDLVDYSH SQGVILHDLCPSFFKLLQPKQVKYIGSGVQKGLLDTVLDKDFPPSENFLIRRRPMEQG MISSVGLCAKKQRFNENKNSTRWPLFHSRAGPKIETVNNTQFSHNESSEHCFNTELSN SGSPYASNSAQQQSVSVNEQLEEKWYASPEELNEGVCTISSNIYSLGVLLFELLGHFE SERAHAAAMLDLRHRIFPPTFLSENLKEAGFCLRLLHPEPSLRPTTRDILQSEVINGF QEVIAEELSSSIIQDDTESELLLHFLSLLKEQQQKHASKLMEDISCLEADIEEVERRR CSRKPLTYSSCNVRECRHLGKEPPISEVHSGLYQLSSASEMRLMRNINHLETAYFSMR SRVQFRETDSMTRPDKDLLENRENWHLAQNNEEIPNPTDSLGAFFDGLCKYARYSKFE VCGILRSGEFNNSANVICSLSFDRDEDYFAAAGVSKKIKIFEFNALFNDSVDIHYPVI EMSNKSKLSCVCWNNYIKNYLASTDYDGLVKLWDASTGQAVSHFIEHEKRAWSVDFSR VYPTKLASGSDDCSVKLWSISEKSCLGTIRNIANVCCVQFSAHSTHLLAFGSADYKTY CYDLRNTRAPWCVLGGHDKAVSYVKFLDSETVVTASTDNTLKLWDLNKTSSAGLSLNA CSLTFRGHTNEKVGFCLWQIVFCSYYISTLTRLLSSFVFGLTFHLLLQNFVGLSAADG YIACGSETNEVCAYYRSLPMPITSHKFGSIDPISGKETDDDNGLFVSSVCWRGKSDMV VAANSSGCIKVLQMV" CDS complement(join(32746512..32746703,32746845..32746904, 32747013..32747330,32747829..32747975,32748887..32749709, 32750504..32750558,32751069..32752674)) /locus_tag="TCM_016403" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG005195t2" /codon_start=1 /product="Ubiquitin ligase protein cop1, putative isoform 5" /protein_id="EOY24945.1" /db_xref="Phytozome:POPTR_0001s10330.1" /db_xref="TAIR:AT4G11110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCP1" /translation="MDGGLSDEVAPIDAAEGTHLQGKEVEYLMKPDNCNMLESREMVI PDEVNTIESSFHVLGNMLEGKKVNRSIGPVNVSEHGCSSPRTIDDANDMVEELTVRNY NGSNLPMVGTSNNRERMQMRQNHWQHFYQLVGGSGSGGSCGNRDNSQAMPSMSQDVGY ASFPEFLGQKPLSDGRNEATEQLMSGDIIEVSGSQLSHGGIKTKILSKSGFSEFFVKT TLKGKGVICRGPSHDASRVEPRDQNNTKSTEGTMVAPTAPLKAAGSPVVASNTSLILV NKAVMTSSSYGIMGPRVGECDRDGMNLREWLKAQCHKAKKSECLYIFKQIVDLVDYSH SQGVILHDLCPSFFKLLQPKQVKYIGSGVQKGLLDTVLDKDFPPSENFLIRRRPMEQG MISSVGLCAKKQRFNENKNSTRWPLFHSRAGPKIETVNNTQFSHNESSEHCFNTELSN SGSPYASNSAQQQSVSVNEQLEEKWYASPEELNEGVCTISSNIYSLGVLLFEVQEPIM LNLHFCHEIFMMASMSYFLFYKACWLKSGFCLRLLHPEPSLRPTTRDILQSEVINGFQ EVIAEELSSSIIQDDTESELLLHFLSLLKEQQQKHASKLMEDISCLEADIEEVERRRC SRKPLTYSSCNVRECRHLGKEPPISEVHSGLYQLSSASEMRLMRNINHLETAYFSMRS RVQFRETDSMTRPDKDLLENRENWHLAQNNEEIPNPTDSLGAFFDGLCKYARYSKFEV CGILRSGEFNNSANVICSLSFDRDEDYFAAAGVSKKIKIFEFNALFNDSVDIHYPVIE MSNKSKLSCVCWNNYIKNYLASTDYDGLVKLWDASTGQAVSHFIEHEKRAWSVDFSRV YPTKLASGSDDCSVKLWSISEKSCLGTIRNIANVCCVQFSAHSTHLLAFGSADYKTYC YDLRNTRAPWCVLGGHDKAVSYVKFLDSETVVTASTDNTLKLWDLNKTSSAGLSLNAC SLTFRGHTNEKNFVGLSAADGYIACGSETNEVCAYYRSLPMPITSHKFGSIDPISGKE TDDDNGLFVSSVCWRGKSDMVVAANSSGCIKVLQMV" CDS complement(join(32746512..32746703,32746845..32747330, 32747829..32747975,32748887..32749709,32750504..32750558, 32751069..32752674)) /locus_tag="TCM_016403" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Ubiquitin ligase protein cop1, putative isoform 8" /protein_id="EOY24948.1" /db_xref="Phytozome:POPTR_0001s10330.1" /db_xref="TAIR:AT4G11110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCP1" /translation="MDGGLSDEVAPIDAAEGTHLQGKEVEYLMKPDNCNMLESREMVI PDEVNTIESSFHVLGNMLEGKKVNRSIGPVNVSEHGCSSPRTIDDANDMVEELTVRNY NGSNLPMVGTSNNRERMQMRQNHWQHFYQLVGGSGSGGSCGNRDNSQAMPSMSQDVGY ASFPEFLGQKPLSDGRNEATEQLMSGDIIEVSGSQLSHGGIKTKILSKSGFSEFFVKT TLKGKGVICRGPSHDASRVEPRDQNNTKSTEGTMVAPTAPLKAAGSPVVASNTSLILV NKAVMTSSSYGIMGPRVGECDRDGMNLREWLKAQCHKAKKSECLYIFKQIVDLVDYSH SQGVILHDLCPSFFKLLQPKQVKYIGSGVQKGLLDTVLDKDFPPSENFLIRRRPMEQG MISSVGLCAKKQRFNENKNSTRWPLFHSRAGPKIETVNNTQFSHNESSEHCFNTELSN SGSPYASNSAQQQSVSVNEQLEEKWYASPEELNEGVCTISSNIYSLGVLLFEVQEPIM LNLHFCHEIFMMASMSYFLFYKACWLKSGFCLRLLHPEPSLRPTTRDILQSEVINGFQ EVIAEELSSSIIQDDTESELLLHFLSLLKEQQQKHASKLMEDISCLEADIEEVERRRC SRKPLTYSSCNVRECRHLGKEPPISEVHSGLYQLSSASEMRLMRNINHLETAYFSMRS RVQFRETDSMTRPDKDLLENRENWHLAQNNEEIPNPTDSLGAFFDGLCKYARYSKFEV CGILRSGEFNNSANVICSLSFDRDEDYFAAAGVSKKIKIFEFNALFNDSVDIHYPVIE MSNKSKLSCVCWNNYIKNYLASTDYDGLVKLWDASTGQAVSHFIEHEKRAWSVDFSRV YPTKLASGSDDCSVKLWSISEKSCLGTIRNIANVCCVQFSAHSTHLLAFGSADYKTYC YDLRNTRAPWCVLGGHDKAVSYVKFLDSETVVTASTDNTLKLWDLNKTSSAGLSLNAC SLTFRGHTNEKVGFCLWQIVFCSYYISTLTRLLSSFVFGLTFHLLLQNFVGLSAADGY IACGSETNEVCAYYRSLPMPITSHKFGSIDPISGKETDDDNGLFVSSVCWRGKSDMVV AANSSGCIKVLQMV" mRNA complement(join(32747307..32747330,32747829..32749709, 32750504..32750558,32751069..32752716,32753407..32753656)) /locus_tag="TCM_016403" /product="Spa1-related 2, putative isoform 9" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10330.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10330.1" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc649t8; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc652t9" CDS complement(join(32748866..32749709,32750504..32750558, 32751069..32752674)) /locus_tag="TCM_016403" /note="encoded by transcript variant 9; alternatively spliced" /codon_start=1 /product="Spa1-related 2, putative isoform 9" /protein_id="EOY24949.1" /db_xref="Phytozome:POPTR_0001s10330.1" /db_xref="TAIR:AT4G11110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCP1" /translation="MDGGLSDEVAPIDAAEGTHLQGKEVEYLMKPDNCNMLESREMVI PDEVNTIESSFHVLGNMLEGKKVNRSIGPVNVSEHGCSSPRTIDDANDMVEELTVRNY NGSNLPMVGTSNNRERMQMRQNHWQHFYQLVGGSGSGGSCGNRDNSQAMPSMSQDVGY ASFPEFLGQKPLSDGRNEATEQLMSGDIIEVSGSQLSHGGIKTKILSKSGFSEFFVKT TLKGKGVICRGPSHDASRVEPRDQNNTKSTEGTMVAPTAPLKAAGSPVVASNTSLILV NKAVMTSSSYGIMGPRVGECDRDGMNLREWLKAQCHKAKKSECLYIFKQIVDLVDYSH SQGVILHDLCPSFFKLLQPKQVKYIGSGVQKGLLDTVLDKDFPPSENFLIRRRPMEQG MISSVGLCAKKQRFNENKNSTRWPLFHSRAGPKIETVNNTQFSHNESSEHCFNTELSN SGSPYASNSAQQQSVSVNEQLEEKWYASPEELNEGVCTISSNIYSLGVLLFEVQEPIM LNLHFCHEIFMMASMSYFLFYKACWLKSGFCLRLLHPEPSLRPTTRDILQSEVINGFQ EVIAEELSSSIIQDDTESELLLHFLSLLKEQQQKHASKLMEDISCLEADIEEVERRRC SRKPLTYSSCNVRECRHLGKEPPISEVHSGLYQLSSASEMRLMRNINHLETAYFSMRS RVQFRETDSMTRPDKDLLENRENWHLAQNNEEIPNPTDSLGAFFDGLCKYARYSKFEV CGILRSGEFNNSANVICSLSFDRDEDYFAAAGVSKKIKIFEFNALFNDSVDIHYPVIE MSNKSKLSCVCWNNYIKNYLASTDYDGLVKVCISCK" gene 32752892..32753630 /locus_tag="TCM_016404" /note="dbxref CacaoGD:Thecc1EG016404" mRNA join(32752892..32752993,32753407..32753630) /locus_tag="TCM_016404" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc751t3_C2" CDS join(32752926..32752993,32753407..32753509) /locus_tag="TCM_016404" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24950.1" /translation="MQRLTSVSGQFRKHIFSNHLVISAPVLETENSENLTRPSAELQL NKDEMGKGITGN" gene 32754354..32754873 /locus_tag="TCM_016405" /note="dbxref CacaoGD:Thecc1EG016405" mRNA 32754354..32754873 /locus_tag="TCM_016405" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 32754514..32754783 /locus_tag="TCM_016405" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24951.1" /translation="MNSPKRYPVENEQSTSVQRGVLQGAKEQANMVASRGQTWDQSFY HLLNLWLLLKPRHAPWRPRHIPSCGNSSVKPRQACRSMAIPISIS" mobile_element 32755341..32755683 /note="source:scaffold_8_CACTA_0867 7830 8181" /mobile_element_type="transposon:TIR/CACTA" gene complement(32756578..32759653) /locus_tag="TCM_016406" /note="dbxref CacaoGD:Thecc1EG016406" mRNA complement(join(32756578..32756805,32756911..32757227, 32757701..32758378,32758888..32759653)) /locus_tag="TCM_016406" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010799" /inference="similar to AA sequence:Phytozome:GSVIVT01019494001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1224t2" CDS complement(join(32757801..32758378,32758888..32759590)) /locus_tag="TCM_016406" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24952.1" /db_xref="Phytozome:GSVIVT01019494001" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TVC9" /translation="MANGGANTADLGENENDNISNWSISKLISSLKSAFRPTVFAKVE AVLVAREDKSKREIEALKQEKDLFFYKSEEERLEKMSFENELNKCKKECEDMRNAVSK LREENMVLRKREKSAEERCKKLLEEMKRIGEKDKEMIDLRSRNCELECEKAKAENEME ILRKRFEELDKKVSSLESDLRFLSNQEDLKENGAGEENRNSKNVGLKFDVKVEEVSFG PSCDSPVKANGNSQNPGSERTPSQSIIPIVDSDDECAPVETLSEKGTTLVCPADNSHT DQIGVENGSPTLKRKRTSFIIIGENENGDNDDNSLTGSVKMKKCEEPVCKPDGCPLNP CSTTTITSDSNEVNKGFSTPREDFMVLRQCEQQMESEQKSQNLMSGFPLDGLGFMEES SCSSDSDSDDDSDGVHIFFNNSQPAPEAQRENGN" gene 32761216..32766501 /locus_tag="TCM_016407" /note="dbxref CacaoGD:Thecc1EG016407" mRNA join(32761216..32762748,32762835..32762900, 32763546..32763690,32763795..32764013,32764442..32764649, 32764740..32764938,32765412..32766501) /locus_tag="TCM_016407" /product="Crooked neck protein / cell cycle protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010800" /inference="similar to AA sequence:ricco:30190.m010800" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11134t2" mRNA join(32761276..32762748,32762835..32762900, 32763546..32763690,32763795..32764013,32764442..32764650, 32765411..32765811) /locus_tag="TCM_016407" /product="Crooked neck protein / cell cycle protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30190.m010800" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045455t1" /inference="similar to AA sequence:ricco:30190.m010800" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1234t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11134t2" mRNA join(32761276..32762748,32762835..32762900, 32763546..32763690,32763795..32764013,32764442..32764653, 32764743..32764938,32765412..32765434) /locus_tag="TCM_016407" /product="Crooked neck protein / cell cycle protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m010800" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045455t1" /inference="similar to AA sequence:ricco:30190.m010800" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1234t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11134t2" CDS join(32761595..32762748,32762835..32762900, 32763546..32763690,32763795..32764013,32764442..32764649, 32764740..32764938,32765412..32765526) /locus_tag="TCM_016407" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m010800" /codon_start=1 /product="Crooked neck protein / cell cycle protein, putative isoform 1" /protein_id="EOY24953.1" /db_xref="TAIR:AT5G41770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GTX9" /translation="MASKDADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQIL REARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEES QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL WYKYIHMEEMLGNVAGARQIFERWMSWMPDQQGWLSYIKFELRYNEVERARAIYERFV QCHPKVGAWIKYAKFEMKNGEIVRARNVYERAVEKLADEEDAEQLFVAFAEFEERCKE TERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEGEVRK NPMNYDTWFDYIRLEESVGSKERIREAYERAIANVPPAEEKRYWQRYIYLWINYALYE ELDAGDTERTRDVYRECLKLIPHEKFSFAKIWLLAAQFEIRQLNLKGARQILGNAIGK APKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWAPENCYAWSKYAELERSLSETERAR SIFELAITQPALDMPELLWKAYIDFEISEGEYEQTRGLYERLLDRTKHLKVWISYAKF EASAMEENNGGSDSPQDGVQEEKKECIQRARRVFERAINYYRTSAPELKEERAMLLEE WLNMESSFGELGNISLVQSKLPKKLKKRKQITSEDGGVAGYEEYIDYLFPEENQTTNL KILEAAYKWKKQKISSDDD" CDS join(32761595..32762748,32762835..32762900, 32763546..32763690,32763795..32764013,32764442..32764650, 32765411..32765417) /locus_tag="TCM_016407" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m010800; paralog of Thecc1EG045455t1" /codon_start=1 /product="Crooked neck protein / cell cycle protein, putative isoform 3" /protein_id="EOY24955.1" /db_xref="TAIR:AT5G41770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GTX9" /translation="MASKDADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQIL REARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEES QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL WYKYIHMEEMLGNVAGARQIFERWMSWMPDQQGWLSYIKFELRYNEVERARAIYERFV QCHPKVGAWIKYAKFEMKNGEIVRARNVYERAVEKLADEEDAEQLFVAFAEFEERCKE TERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEGEVRK NPMNYDTWFDYIRLEESVGSKERIREAYERAIANVPPAEEKRYWQRYIYLWINYALYE ELDAGDTERTRDVYRECLKLIPHEKFSFAKIWLLAAQFEIRQLNLKGARQILGNAIGK APKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWAPENCYAWSKYAELERSLSETERAR SIFELAITQPALDMPELLWKAYIDFEISEGEYEQTRGLYERLLDRTKHLKVWISYAKF EASAMEENNGGSDSPQDGVQEEKKECIQRARRV" CDS join(32761595..32762748,32762835..32762900, 32763546..32763690,32763795..32764013,32764442..32764653, 32764743..32764749) /locus_tag="TCM_016407" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m010800; paralog of Thecc1EG045455t1" /codon_start=1 /product="Crooked neck protein / cell cycle protein, putative isoform 2" /protein_id="EOY24954.1" /db_xref="TAIR:AT5G41770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GTX9" /translation="MASKDADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQIL REARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEES QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL WYKYIHMEEMLGNVAGARQIFERWMSWMPDQQGWLSYIKFELRYNEVERARAIYERFV QCHPKVGAWIKYAKFEMKNGEIVRARNVYERAVEKLADEEDAEQLFVAFAEFEERCKE TERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEGEVRK NPMNYDTWFDYIRLEESVGSKERIREAYERAIANVPPAEEKRYWQRYIYLWINYALYE ELDAGDTERTRDVYRECLKLIPHEKFSFAKIWLLAAQFEIRQLNLKGARQILGNAIGK APKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWAPENCYAWSKYAELERSLSETERAR SIFELAITQPALDMPELLWKAYIDFEISEGEYEQTRGLYERLLDRTKHLKVWISYAKF EASAMEENNGGSDSPQDGVQEEKKECIQRARSDL" mobile_element 32762650..32762703 /note="source:scaffold_10_CACTA_0131 821 874" /mobile_element_type="transposon:TIR/CACTA" gene 32767623..32774546 /locus_tag="TCM_016408" /note="dbxref CacaoGD:Thecc1EG016408" mRNA join(32767623..32767630,32769091..32769166, 32769994..32772097,32772242..32772780,32773250..32773333, 32774171..32774546) /locus_tag="TCM_016408" /product="Coiled-coil domain-containing-like protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400008894" /inference="similar to AA sequence:ricco:30190.m010801" /note="quality class is strong, express is medium, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11068t1" CDS join(32769139..32769166,32769994..32772097, 32772242..32772368) /locus_tag="TCM_016408" /note="dbxref ricco:30190.m010801" /codon_start=1 /product="Coiled-coil domain-containing-like protein" /protein_id="EOY24956.1" /db_xref="TAIR:AT1G64320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCP4" /translation="MEQVEGTKTDVEKRVERILKLIKRRNRVKKEPELVGLVEDFHKQ YQALYAQYDQLRRESSKKADDGKGNESCSYCASSSDSEYYSSEDIEINTNLELNNNRS SHRRMADKTKEEIERANVEVADLKNQLASKTEEKEALTSDHLAALSKIQEIETINRDL RKEVDEKEKRLAALGKVHQGRVTELEERLTGLKTELESLHHQKRDLEDQLDGKTAESK QQEKTNKALYSEFELIPKEEGDAVTKLMKQIKDNENNLMSKIEDSMAQVSNLKKEVDY LRAQKYAAEGSIAGKSSESFDQENVMRQELDSLRSQKTESEILLETKSKEISQYLIQV KSLKEELARKSAVEQITIEQKEGLQVQLMDLESEVDTLRRQKNISEDEVWSNTREINQ LREEKGNLQAKILELETLFRERGLELSAVQEDSKSIKIKVNAQIRTLNAEVELLQQKL DTLKMEKSQLELQIADQQRITKEREEAINKSTEESNSKVVRRWSSGSTLNSQVLERKM EELAEEFRKKVEDNIRLLYQRIKVAEKIHFENKETHKKIKERLEQENGALEEKLANYE AEFRKLRDTMEPGKTALSDLTSAVNELEDEGNSLTRISNVTDELVSANDCEQLKGNVD LAVAELNKEKEESLEAKLREQGEEKLNLIKAVSGLENRVGELEKIMKDKDETLLGLQE EKREAIRQLCLLIDYHRCRCDYLKEFISKFPTTAAVPNGTNLGSRKFPSSYYVQIPAV SYSNGNRIRISK" gene 32772586..32780134 /locus_tag="TCM_016409" /note="dbxref CacaoGD:Thecc1EG016409" mRNA join(32772586..32772780,32773250..32773333, 32774171..32774442,32774732..32775201,32775364..32780080) /locus_tag="TCM_016409" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence:Phytozome:Glyma08g02510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.45 coverage; weak similarity to COP1-interactive protein 1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11228t1" mRNA join(32773256..32773333,32775030..32775201, 32775364..32780134) /locus_tag="TCM_016409" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence:Phytozome:Glyma08g02510.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11228t1; alternateUTRof:Thecc1EG016409t1; weak similarity to COP1-interactive protein 1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11228t1" CDS join(32775108..32775201,32775364..32779802) /locus_tag="TCM_016409" /note="encoded by transcript variant 1; alternatively spliced; weak similarity to COP1-interactive protein 1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24957.1" /db_xref="Phytozome:Glyma08g02510.1" /db_xref="TAIR:AT5G41790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUS2" /translation="MTKHRFRESIKSFFGHHVDPEKDEQLKGSKIEIDDKVKKILKLI KDEEAEENGGISIANSNKEPLVQLIEDFHKHYQNLYAQYDHLTGELRKKVHGKREKDA SSSSSSDSDSDYSSKDGGSKNGQLESEFQKIAEGIKQELEMAKMEIAELKRKLTATNE EKDALHSENLASLSKLQEAEEIVRNLKLESERSESEKSKLVVETEELRLKLDTAGKIE AEVNQRLEDLNREKDNLILEKETAVKRIEDGEKFTEDLRREVDQLKEENITLKQEVES VRGEVSNVQQQLESAEQQVSELSHSLNATVEDNKSLNLELSKVSNEIQQAQGTIQQLM AEMSQSKDEIGEKERELLTLKELHEVHGNQSSAQIKELEAQVTSLELELASLRATNRD LEVQIENKAAEVKQMGEQKIGLQSQISELEMMSKKREDELLILTKKFADNEKESLSRV ENLTVQINNLLVDMESVRTQKSQLEEHIVFKSDEASNQVKSLMDQINRLQQELEFLHS QKAELEMQLERKTQAISDYAIEIEKAKEEIVSKTEDQQRVLQEKEGLVAQTKDLEFEV NSLKNQKGELEQELRTKIEENGQLREEKVGLQGQIFELEKTLAETGLEFTALQEKHAS AENELREEKVGLQGQIFELEKKLAERGLEFTALQEKHATAENEASSQLIALEDQVNNL QQELDSLRTQRNELELQLEREKQESSERISEMENQKLENGQLREEKVGLQGQIFEFEK TLAERGLEFTALQEKHVSVENEASSQLTALDVQVKNLKQELDSLQTQRNELELQLERE KQESAERLSEIENQKLENGQLREKKVGLEDQIFELEKTLAERGLEFTALQEKHVSAEN EASSQLTALEVQVKNLKQELDSLQTQRNELELQLEREKQESSERHSEMENQKLENGRL REEKVGLEDQIFELEKKLAERGLEFTALQEKHVSAENEASSQLTALEVQVKNLKQELD SLQTQRNELELQLEREKQESSERLSEMENQKLENGQLREEKVGLQGQILELEKTLAER GLEFTALQEKHASTENETSSQLTALVVQVNNLQQELDSLQTQRNELELQLEKEKQESS ERLTEMENQKSELEGQINNQQRMLEEQGEAHKKLAEEYKQVETLYQECRANLEAVERK IDEMSEEFHRTIESKSQMAADLKQMVEDLQRDLEAKGVEKNDFINQIIDHQRMLKEKE DARNKLSEEYKQLETSFQDCKVIIEVTERKMQEMAGEHNMNVQSKDQIVADLEQIIDD LKSDLEMKVDELNTLVENVRTIEVKLRLSNQKLRVTEQLLTEKEESFRKAEAKFLEEQ RILEDRITTLSGTIAANQEAHCRMITDIAENVNSTLTGFEAVIQNLEDGYGNYEHCVE ETSKELRIAKHWVAETKSEKKRLINEVTSLIAQLKDQKERESMLRERVEKLQTKADKE EGEMENLIKAVKHLEKKVEFLETVMKEKDRGILGLGEEKREAIRQLCVWIDYHRSRCD DLREILSKTTRVQRAT" CDS join(32775108..32775201,32775364..32779802) /locus_tag="TCM_016409" /note="encoded by transcript variant 2; alternatively spliced; weak similarity to COP1-interactive protein 1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24958.1" /db_xref="Phytozome:Glyma08g02510.1" /db_xref="TAIR:AT5G41790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUS2" /translation="MTKHRFRESIKSFFGHHVDPEKDEQLKGSKIEIDDKVKKILKLI KDEEAEENGGISIANSNKEPLVQLIEDFHKHYQNLYAQYDHLTGELRKKVHGKREKDA SSSSSSDSDSDYSSKDGGSKNGQLESEFQKIAEGIKQELEMAKMEIAELKRKLTATNE EKDALHSENLASLSKLQEAEEIVRNLKLESERSESEKSKLVVETEELRLKLDTAGKIE AEVNQRLEDLNREKDNLILEKETAVKRIEDGEKFTEDLRREVDQLKEENITLKQEVES VRGEVSNVQQQLESAEQQVSELSHSLNATVEDNKSLNLELSKVSNEIQQAQGTIQQLM AEMSQSKDEIGEKERELLTLKELHEVHGNQSSAQIKELEAQVTSLELELASLRATNRD LEVQIENKAAEVKQMGEQKIGLQSQISELEMMSKKREDELLILTKKFADNEKESLSRV ENLTVQINNLLVDMESVRTQKSQLEEHIVFKSDEASNQVKSLMDQINRLQQELEFLHS QKAELEMQLERKTQAISDYAIEIEKAKEEIVSKTEDQQRVLQEKEGLVAQTKDLEFEV NSLKNQKGELEQELRTKIEENGQLREEKVGLQGQIFELEKTLAETGLEFTALQEKHAS AENELREEKVGLQGQIFELEKKLAERGLEFTALQEKHATAENEASSQLIALEDQVNNL QQELDSLRTQRNELELQLEREKQESSERISEMENQKLENGQLREEKVGLQGQIFEFEK TLAERGLEFTALQEKHVSVENEASSQLTALDVQVKNLKQELDSLQTQRNELELQLERE KQESAERLSEIENQKLENGQLREKKVGLEDQIFELEKTLAERGLEFTALQEKHVSAEN EASSQLTALEVQVKNLKQELDSLQTQRNELELQLEREKQESSERHSEMENQKLENGRL REEKVGLEDQIFELEKKLAERGLEFTALQEKHVSAENEASSQLTALEVQVKNLKQELD SLQTQRNELELQLEREKQESSERLSEMENQKLENGQLREEKVGLQGQILELEKTLAER GLEFTALQEKHASTENETSSQLTALVVQVNNLQQELDSLQTQRNELELQLEKEKQESS ERLTEMENQKSELEGQINNQQRMLEEQGEAHKKLAEEYKQVETLYQECRANLEAVERK IDEMSEEFHRTIESKSQMAADLKQMVEDLQRDLEAKGVEKNDFINQIIDHQRMLKEKE DARNKLSEEYKQLETSFQDCKVIIEVTERKMQEMAGEHNMNVQSKDQIVADLEQIIDD LKSDLEMKVDELNTLVENVRTIEVKLRLSNQKLRVTEQLLTEKEESFRKAEAKFLEEQ RILEDRITTLSGTIAANQEAHCRMITDIAENVNSTLTGFEAVIQNLEDGYGNYEHCVE ETSKELRIAKHWVAETKSEKKRLINEVTSLIAQLKDQKERESMLRERVEKLQTKADKE EGEMENLIKAVKHLEKKVEFLETVMKEKDRGILGLGEEKREAIRQLCVWIDYHRSRCD DLREILSKTTRVQRAT" gene complement(32780092..32784571) /locus_tag="TCM_016410" /note="dbxref CacaoGD:Thecc1EG016410" mRNA complement(join(32780092..32780529,32780720..32781064, 32781358..32781471,32781605..32781717,32782194..32782231, 32782415..32782669,32783861..32784571)) /locus_tag="TCM_016410" /product="Adenine nucleotide transporter 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027056001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005192t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s09110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc837t10_C2" mRNA complement(join(32780205..32780529,32780720..32781064, 32781358..32781471,32781605..32781717,32782194..32782231, 32782415..32782544,32782619..32782669,32783861..32784363)) /locus_tag="TCM_016410" /product="Adenine nucleotide transporter 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027056001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005192t1" /inference="similar to AA sequence:ricco:30190.m010803" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11244t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc837t10_C2" CDS complement(join(32780446..32780529,32780720..32781064, 32781358..32781471,32781605..32781717,32782194..32782231, 32782415..32782669,32783861..32784018)) /locus_tag="TCM_016410" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005192t1" /codon_start=1 /product="Adenine nucleotide transporter 1 isoform 1" /protein_id="EOY24959.1" /db_xref="Phytozome:POPTR_0014s09110.1" /db_xref="TAIR:AT4G01100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JHS4" /translation="MASEDVKRSESAVTTIVNIAEEAKLASEGVKAPSRAFLSICKSL VAGGVAGGVSRTAVAPLERLKILLQVVYLSLSFGPYSLRSHFICMLLGYIPILGLKYI WKTEGFRGMFKGNGTNCARIIPNSAVKFFSYEEASKQILYLYRQHSGNEDAQLTPVLR LGAGACAGIIAMSATYPMDMVRGRLTVQTEKSPRQYRGIFHALSTVLREEGPRALYKG WLPSVIGVVPYVGLNFAVYESLKDWLIKSKPFGLVEDSELGVMTRLACGAAAGTVGQT VAYPLDVIRRRMQMVGWKDAASVVTGDGKSKAPLEYTGMVDAFRKTVRYEGIGALYKG LVPNSVKVVPSIAIAFVTYELVKDVLGVELRISD" CDS complement(join(32780446..32780529,32780720..32781064, 32781358..32781471,32781605..32781717,32782194..32782231, 32782415..32782497)) /locus_tag="TCM_016410" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m010803; paralog of Thecc1EG005192t1" /codon_start=1 /product="Adenine nucleotide transporter 1 isoform 2" /protein_id="EOY24960.1" /db_xref="TAIR:AT4G01100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JHS4" /translation="MFKGNGTNCARIIPNSAVKFFSYEEASKQILYLYRQHSGNEDAQ LTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEKSPRQYRGIFHALSTVLREEGP RALYKGWLPSVIGVVPYVGLNFAVYESLKDWLIKSKPFGLVEDSELGVMTRLACGAAA GTVGQTVAYPLDVIRRRMQMVGWKDAASVVTGDGKSKAPLEYTGMVDAFRKTVRYEGI GALYKGLVPNSVKVVPSIAIAFVTYELVKDVLGVELRISD" gene 32785638..32787590 /locus_tag="TCM_016412" /note="dbxref CacaoGD:Thecc1EG016412" mRNA join(32785638..32785779,32786235..32786425, 32787010..32787590) /locus_tag="TCM_016412" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010804" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS join(32785675..32785779,32786235..32786425, 32787010..32787382) /locus_tag="TCM_016412" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24961.1" /translation="MVKDKKQSMASSEFQFQQLRYGAGGYLGGWLYFFPELKSELLYA PGPCLAICPSFASPLYLQTLLKPSICSFLSSFYFFPTLAIQTKNQKRKLVLIWTMTKN VEKFKKREMGGYPETQSSVFVLIMEKKRSRSETKESDSIWDCGSPLYDSYELASFGHV LERHTMALPYPCRPSMQLRIISNKPKAEARVAGEMGNLDGVGLFRKVVKWTLWKTRIR RDRK" gene 32789095..32793782 /locus_tag="TCM_016413" /note="dbxref CacaoGD:Thecc1EG016413" mRNA join(32789095..32789170,32789291..32789936, 32790140..32792399,32792490..32792566,32792987..32793782) /locus_tag="TCM_016413" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m010805" /inference="similar to AA sequence:Phytozome:POPTR_0003s13750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b015859t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1281t2" mRNA join(32789232..32789936,32790140..32792399, 32792490..32793497) /locus_tag="TCM_016413" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m010805" /inference="similar to AA sequence:Phytozome:POPTR_0003s13750.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1279t2; alternateUTRof:Thecc1EG016413t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1281t2" mRNA join(32789516..32789936,32790140..32792399, 32792987..32793782) /locus_tag="TCM_016413" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010805" /inference="similar to AA sequence:Phytozome:POPTR_0003s13750.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1281t2" mRNA join(32789754..32789936,32790140..32793497) /locus_tag="TCM_016413" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30190.m010805" /inference="similar to AA sequence:Phytozome:POPTR_0003s13750.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1281t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1281t2" CDS join(32789822..32789936,32790140..32792399,32792987) /locus_tag="TCM_016413" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24962.1" /db_xref="Phytozome:POPTR_0003s13750.1" /translation="MAEESQVRFVRCFKCKSLLQELREYSFYKCGSCGAVLQAKKKEP ASNGFLDKPIEEKGRGGCEEVDSQLDKGGSLRSASETEICGVEGISRRKERTFGEKSM NFNSVSARINKENVYLGDDKKVREHKHEHNRAEKGVGYVDNYMPSSKNPVNNWAQRDD QDMNMNRSKSVNSSRGSKVEDYSPKLANFAGSLRLKGVTDMRGVDRDGFGGFYKRSLR TIDEQDRFSVYRYPDEGPSNYRYGSAYGYHKPVKSFGYLDVPSVIKKFDRTQLLKELD ELKDQLLQRPRDMVPSDNIIASSDPLGGSIGNKSSAHHRSAQYPHVSELTYLNHSSMN DDDHVQNYGKFHPASKHVRRKIPGCGDSLSPCMHRRWHQQVTHYHHQHRTYGYSSRHN EDLLASYPNPDETLYHLPSCSCLHCSDKNLKGPLQVPPDFSKRRFLKDPCNSNFNHYV NSDGVQQHYLPRTAQCPLVNFQDSPVHVWPSDIDSDIDGFGRRCPRRVVLACRDKQIC HPIANGAPFITCHKCLALLKLPRKFRKTMKNDQRLRCGACSTAIVFEMEKRLINSVPG NPKRRPTEAEQKSSELLNVGHLSSHGCFNAGATIPSSRNVEHSGYDQTSSKDVESPDN VIDWKDSPGSPEQPSSYDVCPAVSSLPFQDQVSNPSSNQAVSGSRKGNRTKLAQEEKV ILLKNASQVVSEKNAPVATEVEVSFSGYLNSSSSKDTLQASKEENQLKLHKGSKSFLV GLIKKSFRDCSRSNDNIKNERPNVLVNGQDMSDSAVRKAEKQAGPIRPGNY" CDS join(32789822..32789936,32790140..32792399, 32792490..32792502) /locus_tag="TCM_016413" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24963.1" /db_xref="Phytozome:POPTR_0003s13750.1" /translation="MAEESQVRFVRCFKCKSLLQELREYSFYKCGSCGAVLQAKKKEP ASNGFLDKPIEEKGRGGCEEVDSQLDKGGSLRSASETEICGVEGISRRKERTFGEKSM NFNSVSARINKENVYLGDDKKVREHKHEHNRAEKGVGYVDNYMPSSKNPVNNWAQRDD QDMNMNRSKSVNSSRGSKVEDYSPKLANFAGSLRLKGVTDMRGVDRDGFGGFYKRSLR TIDEQDRFSVYRYPDEGPSNYRYGSAYGYHKPVKSFGYLDVPSVIKKFDRTQLLKELD ELKDQLLQRPRDMVPSDNIIASSDPLGGSIGNKSSAHHRSAQYPHVSELTYLNHSSMN DDDHVQNYGKFHPASKHVRRKIPGCGDSLSPCMHRRWHQQVTHYHHQHRTYGYSSRHN EDLLASYPNPDETLYHLPSCSCLHCSDKNLKGPLQVPPDFSKRRFLKDPCNSNFNHYV NSDGVQQHYLPRTAQCPLVNFQDSPVHVWPSDIDSDIDGFGRRCPRRVVLACRDKQIC HPIANGAPFITCHKCLALLKLPRKFRKTMKNDQRLRCGACSTAIVFEMEKRLINSVPG NPKRRPTEAEQKSSELLNVGHLSSHGCFNAGATIPSSRNVEHSGYDQTSSKDVESPDN VIDWKDSPGSPEQPSSYDVCPAVSSLPFQDQVSNPSSNQAVSGSRKGNRTKLAQEEKV ILLKNASQVVSEKNAPVATEVEVSFSGYLNSSSSKDTLQASKEENQLKLHKGSKSFLV GLIKKSFRDCSRSNDNIKNERPNVLVNGQDMSDSAVRKAEKQAGPIRPGNYCCAT" CDS join(32789822..32789936,32790140..32792399, 32792490..32792502) /locus_tag="TCM_016413" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24964.1" /db_xref="Phytozome:POPTR_0003s13750.1" /translation="MAEESQVRFVRCFKCKSLLQELREYSFYKCGSCGAVLQAKKKEP ASNGFLDKPIEEKGRGGCEEVDSQLDKGGSLRSASETEICGVEGISRRKERTFGEKSM NFNSVSARINKENVYLGDDKKVREHKHEHNRAEKGVGYVDNYMPSSKNPVNNWAQRDD QDMNMNRSKSVNSSRGSKVEDYSPKLANFAGSLRLKGVTDMRGVDRDGFGGFYKRSLR TIDEQDRFSVYRYPDEGPSNYRYGSAYGYHKPVKSFGYLDVPSVIKKFDRTQLLKELD ELKDQLLQRPRDMVPSDNIIASSDPLGGSIGNKSSAHHRSAQYPHVSELTYLNHSSMN DDDHVQNYGKFHPASKHVRRKIPGCGDSLSPCMHRRWHQQVTHYHHQHRTYGYSSRHN EDLLASYPNPDETLYHLPSCSCLHCSDKNLKGPLQVPPDFSKRRFLKDPCNSNFNHYV NSDGVQQHYLPRTAQCPLVNFQDSPVHVWPSDIDSDIDGFGRRCPRRVVLACRDKQIC HPIANGAPFITCHKCLALLKLPRKFRKTMKNDQRLRCGACSTAIVFEMEKRLINSVPG NPKRRPTEAEQKSSELLNVGHLSSHGCFNAGATIPSSRNVEHSGYDQTSSKDVESPDN VIDWKDSPGSPEQPSSYDVCPAVSSLPFQDQVSNPSSNQAVSGSRKGNRTKLAQEEKV ILLKNASQVVSEKNAPVATEVEVSFSGYLNSSSSKDTLQASKEENQLKLHKGSKSFLV GLIKKSFRDCSRSNDNIKNERPNVLVNGQDMSDSAVRKAEKQAGPIRPGNYCCAT" CDS join(32789822..32789936,32790140..32792403) /locus_tag="TCM_016413" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY24965.1" /db_xref="Phytozome:POPTR_0003s13750.1" /translation="MAEESQVRFVRCFKCKSLLQELREYSFYKCGSCGAVLQAKKKEP ASNGFLDKPIEEKGRGGCEEVDSQLDKGGSLRSASETEICGVEGISRRKERTFGEKSM NFNSVSARINKENVYLGDDKKVREHKHEHNRAEKGVGYVDNYMPSSKNPVNNWAQRDD QDMNMNRSKSVNSSRGSKVEDYSPKLANFAGSLRLKGVTDMRGVDRDGFGGFYKRSLR TIDEQDRFSVYRYPDEGPSNYRYGSAYGYHKPVKSFGYLDVPSVIKKFDRTQLLKELD ELKDQLLQRPRDMVPSDNIIASSDPLGGSIGNKSSAHHRSAQYPHVSELTYLNHSSMN DDDHVQNYGKFHPASKHVRRKIPGCGDSLSPCMHRRWHQQVTHYHHQHRTYGYSSRHN EDLLASYPNPDETLYHLPSCSCLHCSDKNLKGPLQVPPDFSKRRFLKDPCNSNFNHYV NSDGVQQHYLPRTAQCPLVNFQDSPVHVWPSDIDSDIDGFGRRCPRRVVLACRDKQIC HPIANGAPFITCHKCLALLKLPRKFRKTMKNDQRLRCGACSTAIVFEMEKRLINSVPG NPKRRPTEAEQKSSELLNVGHLSSHGCFNAGATIPSSRNVEHSGYDQTSSKDVESPDN VIDWKDSPGSPEQPSSYDVCPAVSSLPFQDQVSNPSSNQAVSGSRKGNRTKLAQEEKV ILLKNASQVVSEKNAPVATEVEVSFSGYLNSSSSKDTLQASKEENQLKLHKGSKSFLV GLIKKSFRDCSRSNDNIKNERPNVLVNGQDMSDSAVRKAEKQAGPIRPGNYW" gene 32793436..32799650 /locus_tag="TCM_016414" /note="dbxref CacaoGD:Thecc1EG016414" mRNA join(32793436..32793846,32795622..32795870, 32796392..32796681,32798391..32799650) /locus_tag="TCM_016414" /product="Trichome birefringence-like 23" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019502001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005186t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13760.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01885t00001" CDS join(32793807..32793846,32795622..32795870, 32796392..32796681,32798391..32799164) /locus_tag="TCM_016414" /note="paralog of Thecc1EG005186t1" /codon_start=1 /product="Trichome birefringence-like 23" /protein_id="EOY24966.1" /db_xref="Phytozome:POPTR_0003s13760.1" /db_xref="TAIR:AT4G11090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82509" /translation="MNSLLYLRGRKERRRKKKKMRVNWKSWSLNKHQHVLVKLAVAVL LVGLAFRLFVSRSKGFASDLESPVLGKEQVQGPDLKPPVSVEIPENEDQIPLDIVAEK CDLFTGDWIPSPSGPTYTNKSCPLIEGHQNCMRNGRPDPEYLYWKWKPRDCQLPRFNA GRFLELMRNKAWALIGDSISRNHVQSLLCMLTTVERPVEVYHDGEYKSKRWHFPSYNF TISNIWSPFLVKAAIFEDNNGVSTAEVQLHLDKLDKTWTDVYQSLDYMIISTGKWFLK AAIYHENDTIVGCHICPEKNLTELGFVYAYNKTLHYVMDFIATSKHKGLIFFRTSTPD HFENGEWHNGGTCRRTTPAKEGEIEIKDLNRILRNVELEEFEKTAAKAADNGVKLKLL DFTNLLLLRPDGHPGPYRQFQPFAGNKTAVVQNDCLHWCLPGPIDFWNDVIMEMVVNG " mobile_element complement(32794575..32795237) /note="source:CACAO_on_E373_scaffold_1 25 725" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 32794871..32795280 /note="source:scaffold_4_CACTA_0482 17116 17512" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32796946..32796995) /note="source:scaffold_9_CACTA_0934 6326 6376" /mobile_element_type="transposon:TIR/CACTA" gene 32799732..32801984 /locus_tag="TCM_016416" /note="dbxref CacaoGD:Thecc1EG016416" mRNA join(32799732..32800345,32800430..32800555, 32800659..32801102,32801191..32801535,32801615..32801984) /locus_tag="TCM_016416" /product="High mobility group family isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010807" /inference="similar to AA sequence:ricco:30190.m010807" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06587t00001" mRNA join(32799857..32800345,32800430..32800555, 32800659..32801319) /locus_tag="TCM_016416" /product="HMG box protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m010807" /inference="similar to AA sequence:Phytozome:POPTR_0001s10410.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc219t5; inference alignment:Newbler:10:TSA:cgbaB_g06587t00001" CDS join(32799884..32800345,32800430..32800555, 32800659..32801102,32801191..32801535,32801615..32801746) /locus_tag="TCM_016416" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m010807" /codon_start=1 /product="High mobility group family isoform 1" /protein_id="EOY24967.1" /db_xref="TAIR:AT4G11080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL80" /translation="MADAAVVDVPKKSRNNGRKALKQKNPSTNEANILAQKLSQASPT PVASPMEADPSKENQEGLSQPLTSPKKGKVAARGKQGKQQQQSFEKDLQEMQEMLQKL RIEKEKTEVLLKEKDEMLKMKEEELETKGKEQEKLQMEFKKLQKMKEFKPTMTFPIAQ SLKDKEQDKKEKKKGGPEKKRPSPPYILWCKDQWNEVKKENPEADFKEVSNILGAKWK TITAEEKKPYEEKYHTEKEAYLQVIAKEKRECEAMKLLEDEHKQKTAMELLEQYLQFR HEAEKETKKTKKERDPLKPKQPMSAFFLFSNERRAALLAENKNVLEVAKITGEEWKNM TEEQRGPYEEMAKKMKEKYMQEMEVYKHKKEEEALSLRKEEEEMMKLQKQEALQLLKK KEKTENIIKKTKEKRQKKKQQSSDPNRPKKPASSFLLFSKEARKTLMQERPGINNATL NALISVKWKEISEEEKNVWNAKAAEAMEAYKKDLEEYNKSVAEAAETKQQQQ" CDS join(32799884..32800345,32800430..32800555, 32800659..32801183) /locus_tag="TCM_016416" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="HMG box protein isoform 2" /protein_id="EOY24968.1" /db_xref="Phytozome:POPTR_0001s10410.1" /db_xref="TAIR:AT4G23800.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL80" /translation="MADAAVVDVPKKSRNNGRKALKQKNPSTNEANILAQKLSQASPT PVASPMEADPSKENQEGLSQPLTSPKKGKVAARGKQGKQQQQSFEKDLQEMQEMLQKL RIEKEKTEVLLKEKDEMLKMKEEELETKGKEQEKLQMEFKKLQKMKEFKPTMTFPIAQ SLKDKEQDKKEKKKGGPEKKRPSPPYILWCKDQWNEVKKENPEADFKEVSNILGAKWK TITAEEKKPYEEKYHTEKEAYLQVIAKEKRECEAMKLLEDEHKQKTAMELLEQYLQFR HEAEKETKKTKKERDPLKPKQPMSAFFLFSNERRAALLAENKNVLEVAKITGEEWKNM TEEQRGPYEEVLDLWKKTRISIKFLLAWFDLSIFFL" gene 32802036..32807608 /locus_tag="TCM_016417" /note="dbxref CacaoGD:Thecc1EG016417" mRNA join(32802036..32802460,32802567..32802797, 32803504..32803601,32804200..32804386,32805050..32805180, 32805308..32805544,32805662..32806098,32807349..32807608) /locus_tag="TCM_016417" /product="Transmembrane amino acid transporter family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010808" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016418t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019506001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc818t12" CDS join(32802376..32802460,32802567..32802797, 32803504..32803601,32804200..32804386,32805050..32805180, 32805308..32805544,32805662..32806051) /locus_tag="TCM_016417" /note="paralog of Thecc1EG016418t1" /codon_start=1 /product="Transmembrane amino acid transporter family protein" /protein_id="EOY24969.1" /db_xref="Phytozome:GSVIVT01019506001" /db_xref="TAIR:AT5G41800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L4X4" /translation="MAKPTQPDVFPDSRLESDAGATFVLESKGKWWHAGYHLTTAIVG PTILTLPYAFRGLGWGLGLFCLTALGCVTFYSYYLMSRVLEHCEQAGRRHIRFRELAA DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGQCLKIMYENFSPNGSLRLYEFIAMVT VVMIVLSQLPSFHSLRHINLISLLLCLGYSFLVVGACVHAGFSKNAPPRDYSLESSSS ARVFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVKGLLMCYTVAFFTFYSAAVS GYWVFGNKSNSNILKSLMPDEGPSLAPTMLLGLAVLFVLLQLLAIGLVYSQVAYEIME KQSADVKLGMFSKRNLIPRLILRSLYVIFCGFMAAMLPFFGDISGVVGAIGFIPLDFI LPMLLYNMTHKPSRLSFTYWINLFIIIAFTGVGIMGAFSSIRKLVLDANKFKLFSSDV VD" mobile_element complement(32806423..32806830) /note="source:CACAO_MITE23_scaffold_2 6 420" /mobile_element_type="transposon:TIR/MITE" gene 32807322..32812795 /locus_tag="TCM_016418" /note="dbxref CacaoGD:Thecc1EG016418" mRNA join(32807322..32807348,32807438..32807723, 32807782..32807877,32807973..32808203,32809295..32809392, 32810347..32810533,32811198..32811328,32811622..32811858, 32812032..32812795) /locus_tag="TCM_016418" /product="Transmembrane amino acid transporter family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010808.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016417t1" /inference="similar to AA sequence:ricco:30190.m010808" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11108t4" CDS join(32807793..32807877,32807973..32808203, 32809295..32809392,32810347..32810533,32811198..32811328, 32811622..32811858,32812032..32812421) /locus_tag="TCM_016418" /note="dbxref ricco:30190.m010808; paralog of Thecc1EG016417t1" /codon_start=1 /product="Transmembrane amino acid transporter family protein" /protein_id="EOY24970.1" /db_xref="TAIR:AT5G41800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L4X4" /translation="MAQSPQSDPFQESRLDSDAGAVFVLESKGKWWHAGFHLTTAIVG PTILTLPYAFRGLGWILGIFCLTVMGCVTFYSYYLMSKVLEHCEKAGRRHIRFRELAA DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGQCLQIMYSNLSPSGSLKLYEFIAMVT VVMIILSQLPTFHSLRHLNFASLLLSLGYTFLVVGACIHAGLSKNAPHRDYSLEPSNS SRVFSAFTSISILAAIFGNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYTAAVS GYWAFGNKSNSNILKSLMPDNGPSLAPTVVLGLAVVFILLQLFAIGLVYSQVAYEIME KQSADIKRGVFSKRNLIPRLILRTLYVIFCGFMAAMLPFFGDINGVVGAIGFIPLDFV LPMLLYNMTYKPPRSSLTYWINLFIIVAFTGTGIMGSFSSIRKLVLDANKFKLFSSDV VD" gene 32814957..32816019 /locus_tag="TCM_016419" /note="dbxref CacaoGD:Thecc1EG016419" mRNA 32814957..32816019 /locus_tag="TCM_016419" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10440.1" /inference="similar to AA sequence:ricco:30190.m010809" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc782t1" CDS 32815146..32815727 /locus_tag="TCM_016419" /note="dbxref ricco:30190.m010809" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24971.1" /db_xref="TAIR:AT5G41810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCQ2" /translation="MEKSQAQKQKQTQDAKKEEEKPQEEKQRQTQKAKQKTQKTQEGK HLVWDCGSTLYDSFELNSFKRQLDSAIHSRTMSMPHLVDTRAPPPPPQSTIPPPVVSK KQPSKFSRSIQKLFKSMFKFKQSSSSSVFWLKQRSHEEYYVVYDKTGALTTIPEVPEI DFGGLSPEINSLVVKRTASERFTAASTVGISCA" mobile_element 32819701..32819773 /note="source:scaffold_1_CACTA_0030 673 746" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32819851..32819961 /note="source:scaffold_1_CACTA_0016 1098 1209" /mobile_element_type="transposon:TIR/CACTA" gene 32819983..32822488 /locus_tag="TCM_016420" /note="dbxref CacaoGD:Thecc1EG016420" mRNA join(32819983..32820325,32820476..32820985, 32821321..32821867,32822116..32822488) /locus_tag="TCM_016420" /product="UDP-glucosyltransferase, putative" /inference="alignment:exonerate-protein:2:frave:gene32056" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016421t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019508001" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS join(32820011..32820325,32820476..32820985, 32821321..32821867,32822116..32822327) /locus_tag="TCM_016420" /note="paralog of Thecc1EG016421t1" /codon_start=1 /product="UDP-glucosyltransferase, putative" /protein_id="EOY24972.1" /db_xref="Phytozome:GSVIVT01019508001" /db_xref="TAIR:AT1G01420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T6P2" /translation="MGNSQEPSFHVAMVPTPGMGYLIPLVEFAKRLVHQYHNFEVTII VPDDGSPMKYQRQLLQALPKSISSIFLPLMSFDDLPKDVRMETRILLSLVRSLPALKG SLKLDEMFSCEYRDLPEPIKLPGCVSFHRSDIPDPAQDKKNVAYQRTIQLFRRYPLAA GIIVNSFMDLEQNAFRALMEDEIGLPKVYPVGPLIQTSSIKEVNGSNNCLRWLDVEPH GSVVYVCFGSGGTLFYEQMNELPLGLKMSGQRFLWVMKSLIEKATNATYLLELMLACV CRDERMQTTNKVRLLDENILGKIVMKKVFENALSAKFKGKVMFETTPRKEPGESREKE KRSHQHNKSQLRKNKFQICSHKQGTVAQTTVAAEYMVAVIAANQATWIRKVPLHFGMP QTKPTELFVVNKSTITVAKNTVFYGRTKHISVKYYLSSDAKKCGEMLIPHFSFEEQFT NMLTKSLKSVKDPFHFLPNGFLDRTKGIGVVVQSWAPQIEILRHGSTGGFLTHCGWNS TLEAIVHGVPLIAWPLHAE" mobile_element complement(32820963..32821004) /note="source:CACAO_M_E46_F6_scaffold_1 291 332" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 32821000..32821958 /note="source:INTACT751_F6_scaffold_4-int 185 1141" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 32821954..32822101 /note="source:INTACT751_F6_scaffold_4-int 1284 1431" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 32824186..32827139 /locus_tag="TCM_016421" /note="dbxref CacaoGD:Thecc1EG016421" mRNA join(32824186..32824201,32824332..32824413, 32825168..32827139) /locus_tag="TCM_016421" /product="UDP-Glycosyltransferase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016422t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019508001" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11285t1" CDS 32825261..32826715 /locus_tag="TCM_016421" /note="paralog of Thecc1EG016422t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein" /protein_id="EOY24973.1" /db_xref="Phytozome:GSVIVT01019508001" /db_xref="TAIR:AT4G01070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I8V8" /translation="MSHSLQPKATMENSQETTVHVAMVPTPGMGHLLPLVEFAKRLVH QYHNFEVTIIVPDDGSPMKYQRQLLQALPRSISSIFLPPVSFDDLPEDVGIETKIVLS LVRSLPALKDSLKVLVESTRLVAVVVDLFGIDAIDVFEEFGLTPYIFFPSTAMLLQLI FHLPKLDEMFSCEYRNLPEPIKLPGCVPFHGSDITDPVQDKKNVGYQSVIQLCRRYPL AAGIIVNSFMDLEQDAFRALMEDEIGLPKVYPVGPLIQTSSMNEVNGSNNCLRWLDVQ PHGSVVYVCFGSGGTLSHEQMNELALGLEMSGQRFLWVAKSPVEKATNATYFGVESVK DPFHFLPDGFLERTKGVGVVVRSWAPQIEILRHGSTGGFLTHCGWNSTLEAIVHGVPL IAWPLYAEQKMNAVLLADDLKVAIRVKENENGVVGREDIAKFVEGLIEGEEGQLLRNK MRKLKDAAKMVLSPDGSSTKSLAKVAEMWKNQEK" gene 32829283..32836588 /locus_tag="TCM_016422" /note="dbxref CacaoGD:Thecc1EG016422" mRNA join(32829283..32830640,32833305..32833474, 32833578..32833689,32833773..32833870,32833990..32834139, 32834241..32834396,32834701..32834813,32835007..32835133, 32836081..32836125,32836196..32836588) /locus_tag="TCM_016422" /product="Hydroquinone glucosyltransferase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13800.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016421t1" /inference="similar to AA sequence:frave:gene32062" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00126t00001" CDS join(32829293..32830640,32833305..32833474, 32833578..32833689,32833773..32833870,32833990..32834139, 32834241..32834396,32834701..32834813,32835007..32835133, 32836081..32836125,32836196..32836327) /locus_tag="TCM_016422" /note="dbxref frave:gene32062; paralog of Thecc1EG016421t1" /codon_start=1 /product="Hydroquinone glucosyltransferase, putative" /protein_id="EOY24974.1" /db_xref="TAIR:AT4G01070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AR73" /translation="METTQESPLHVVIVPTPGMGHLIPLIEFAKRLVDLHKFAVTFFV PNDGSPMKLQRQLLLTQPEPISSIFLPPVSFDDLPEDAKIETRIILSLNRSLHFLRDS FQVLAQSTRVVAFVVDVFGIDAFDVAKEFGLEPYIFVTTAVMLLSLIFELPKLDQMFS CEYRDLPEPIKLPGCVPFHGSDVPDPLQHRTNFAYQETLQQCKRYPLAAGIVINSFMD LEKGTLDALMESGRGLPAVYPVGPLIRTSSTSEVEGSNNCLRWLDEQPSGSVLYVCFG SGGTLSHEQLNELALGLEMSGQRFLWVVKEPNEIVANATYFGIENVKNPFAFLPDGFL ERTKEVGLVVPSWAPQIQVLSHGSTGGFLTHCGWNSVLESIVHGVPLIAWPLYAEQKM NAVLLKDGLKVAFRVRVNEDGLVGREDIAKYVKELIEGDEGQLLRTRVRKLKDAAKVD CTDMEKPLAILERGTTCSAWNYCGERLAAGSVDGSLSILDSRDSSSSSFICSSKFKAN EAGIVKVAWIPPEYGDAVACICEDGTLSIWEELVEGTQPLQWKLCKSFKTSSKVLDVQ FGVNQTSLKMVAAYSDGFVKIFELLDPLELKNWQLQVLNSVHLRFPLFLLHFLDIQPF PIAEYQNVIDSVSTFGKASCLTACISWNPQRGEGQESSFILGFNSNTPQLNSPKVWEF DPAHQRWLPVAELALPGDKGDQVYSVAWAPNIGRPYEVIAVASQKGIAIWHVGSTPDL DGRLSVEKAALLSEHNSEKEAIALLACAPILLKVWQMEWDMSGMTLATTESNGPVRLW QSNLNGAWHEQAAFEPTS" gene complement(32831158..32832157) /locus_tag="TCM_016423" /note="dbxref CacaoGD:Thecc1EG016423" mRNA complement(32831158..32832157) /locus_tag="TCM_016423" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(32831423..32831647) /locus_tag="TCM_016423" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24975.1" /translation="MIEGFIKGVFSSPIGIGDSNYAQFLTIKKGLSLFPSSPWTSNFP IVENDSKNAISWVLNLSFASWRMKNIYSNL" gene 32836657..32842380 /locus_tag="TCM_016424" /note="dbxref CacaoGD:Thecc1EG016424" mRNA join(32836657..32836986,32837204..32837445, 32838670..32838782,32838879..32839051,32839158..32839370, 32839487..32839869,32839995..32840119,32841751..32841949, 32842184..32842380) /locus_tag="TCM_016424" /product="NAD(P)-binding Rossmann-fold superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019510001" /inference="similar to AA sequence:ricco:30190.m010811" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1452t1" CDS join(32836924..32836986,32837204..32837445, 32838670..32838782,32838879..32839051,32839158..32839370, 32839487..32839869,32839995..32840119,32841751..32841949, 32842184..32842328) /locus_tag="TCM_016424" /note="dbxref ricco:30190.m010811" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein, putative" /protein_id="EOY24976.1" /db_xref="TAIR:AT4G27250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL76" /translation="MDQNQTLIGQLMIPGHFRTIKLLSSHYDGCKNFWDQFASYTSMM FVMHISSAWKKPSMEGRFLCVVANPTIREIAMHFRENYRNTRYLKSEKEESDGTLPSK TSNIKVCVTGGAGYIASWLVKKLLEKGYIVHSTLRNLEDKSKVDFLKSLPGADTNLML FQADLYNPNQFERAIQGCEYVFHVATPLVHDSTQGSMFKDTTEAAVAGVRSIADACIR SQTVKRLIYTASVMASSPLTEDRLQFKPCVDESCWTPVDMLFTYCNEVTLAYTRSKTL AEKEALSYNEKNNCNLEVVTLPCGLVGGETLLSYVPLSVEIMTLTHLRGKIFSVEGLR LMQEILGSVPLVHIDDVCDAHIFCMETPSMRGRFLCAAANPTIAEIATYFGENYPDCK IGEELMGEEKGGIAFDSSKLIKMGFHYKCDMKKILDDSMKCRRRLEKGALSYNDNPDG KLEAVTLPCGLEGGETLLSYVPLSVEVMFSQLIGNLPAFKAFEFIEELLGSIPRFMGQ EKKGIACDSSKLVKMGFEYKYDMKKILDDNVKCGIQLGAVFLN" mobile_element complement(32840233..32840370) /note="source:CACAO_on_S_E390_scaffold_9 2170 2335" /mobile_element_type="transposon:TIR/Mutator" gene 32843867..32846131 /locus_tag="TCM_016425" /note="dbxref CacaoGD:Thecc1EG016425" mRNA join(32843867..32844292,32845383..32845400, 32845500..32845695,32845817..32846131) /locus_tag="TCM_016425" /product="1-acyl-sn-glycerol-3-phosphate acyltransferase delta isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019510001" /inference="similar to AA sequence:Phytozome:GSVIVT01019510001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03902t00001; inference alignment:Newbler:10:TSA:cgbaB_g03902t00001" mRNA join(32843920..32844292,32845383..32845400, 32845500..32845690,32845817..32846107) /locus_tag="TCM_016425" /product="1-acyl-sn-glycerol-3-phosphate acyltransferase delta isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019510001" /inference="similar to AA sequence:Phytozome:GSVIVT01019510001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10008t00001; alternateUTRof:Thecc1EG016425t1; inference alignment:Newbler:10:TSA:cgbaB_g03902t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc56t8" CDS join(32843941..32844292,32845383..32845400, 32845500..32845690) /locus_tag="TCM_016425" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="1-acyl-sn-glycerol-3-phosphate acyltransferase delta isoform 1" /protein_id="EOY24977.1" /db_xref="Phytozome:GSVIVT01019510001" /db_xref="TAIR:AT1G64355.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCQ6" /translation="MNLSCLQLLPSYPVPLTFAGSSSFLHNHRANPSKLSRDFRSYKN GEVVKRKGGIVCGWLLPVDPWAPNIDSQSIASQLFAVSLFPYIGFLYFITKSKSAPKL TLFGFYFLLAFVGATIPAGIYAKVKYGTSLSNVDWLHGGAESLLTLTNLFIVLGLRQA LRKTEDAKESTSSSAPDAKEQEKPFI" CDS join(32843941..32844292,32845383..32845400, 32845500..32845690) /locus_tag="TCM_016425" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="1-acyl-sn-glycerol-3-phosphate acyltransferase delta isoform 1" /protein_id="EOY24978.1" /db_xref="Phytozome:GSVIVT01019510001" /db_xref="TAIR:AT1G64355.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCQ6" /translation="MNLSCLQLLPSYPVPLTFAGSSSFLHNHRANPSKLSRDFRSYKN GEVVKRKGGIVCGWLLPVDPWAPNIDSQSIASQLFAVSLFPYIGFLYFITKSKSAPKL TLFGFYFLLAFVGATIPAGIYAKVKYGTSLSNVDWLHGGAESLLTLTNLFIVLGLRQA LRKTEDAKESTSSSAPDAKEQEKPFI" gene complement(32846398..32848471) /locus_tag="TCM_016426" /note="dbxref CacaoGD:Thecc1EG016426" mRNA complement(join(32846398..32847194,32847500..32847628, 32847739..32848357)) /locus_tag="TCM_016426" /product="WRKY family transcription factor, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g36970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015346t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13840.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10215t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10215t2" CDS complement(join(32846561..32847194,32847500..32847628, 32847739..32848055)) /locus_tag="TCM_016426" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015346t1" /codon_start=1 /product="WRKY family transcription factor, putative isoform 1" /protein_id="EOY24979.1" /db_xref="Phytozome:POPTR_0003s13840.1" /db_xref="TAIR:AT4G23810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXG9" /translation="MEHGWHWEQETLIGELIQGMELAKQLRVHLGTASSVESRDLLVQ KILSSYEKALLILKMNRPVGQPQQNVGATSGVPESPLSTNGSPRSDDLEKDNQDIRDV SKKRKMLPRWTDQVRVSSESLLEGPHDDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQ NCWATKQVQRSDEDPAIFEITYRGTHTCALGNQAAVPPPASPEKQEHKSNNLNYNNNQ QWQSQDILLNFRKGLRVNTEGLDNKGVAPSFSFPPSSFGCLTSENHTSSPSGVLDNNN ILGSFSSPFMSPATPELNYFSVSHSQMNNLGGILDARHAESVLTELISANTSATNSPI MDLDFSLDHVELDPNFPFDTPGFFS" mRNA complement(join(<32846651..32847194,32847500..32847628, 32847739..32848471)) /locus_tag="TCM_016426" /product="WRKY family transcription factor, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g36970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015346t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10490.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc56t7; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10215t2" CDS complement(join(<32846651..32847194,32847500..32847628, 32847739..32848055)) /locus_tag="TCM_016426" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015346t1" /codon_start=1 /product="WRKY family transcription factor, putative isoform 2" /protein_id="EOY24980.1" /db_xref="Phytozome:POPTR_0001s10490.1" /db_xref="TAIR:AT4G23810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL73" /translation="MEHGWHWEQETLIGELIQGMELAKQLRVHLGTASSVESRDLLVQ KILSSYEKALLILKMNRPVGQPQQNVGATSGVPESPLSTNGSPRSDDLEKDNQDIRDV SKKRKMLPRWTDQVRVSSESLLEGPHDDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQ NCWATKQVQRSDEDPAIFEITYRGTHTCALGNQAAVPPPASPEKQEHKSNNLNYNNNQ QWQSQDILLNFRKGLRVNTEGLDNKGVAPSFSFPPSSFGCLTSENHTSSPSGVLDNNN ILGSFSSPFMSPATPELNYFSVSHSQMNNLGGILDARHAESVLTELISANTSAT" gene complement(32848443..32850227) /locus_tag="TCM_016427" /note="dbxref CacaoGD:Thecc1EG016427" mRNA complement(join(32848443..32849549,32850208..32850227)) /locus_tag="TCM_016427" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(32849280..32849486) /locus_tag="TCM_016427" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24981.1" /translation="MKTKFIPNTILCLRGDTCNPIHHGDVHLMALIEGKAQQTQQYKD KQRTQNDRTLIELIGLIITVKPVV" mobile_element complement(32851121..32851186) /note="source:INTACT789_F335_scaffold_1-int 321 386" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32851544..32853302) /locus_tag="TCM_016428" /note="dbxref CacaoGD:Thecc1EG016428" mRNA complement(join(32851544..32851891,32852896..32852983, 32853153..32853302)) /locus_tag="TCM_016428" /product="Homeodomain-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g02060.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015351t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s09200.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01473t00002" CDS complement(join(32851768..32851891,32852896..32852983, 32853153..32853204)) /locus_tag="TCM_016428" /note="paralog of Thecc1EG015351t1" /codon_start=1 /product="Homeodomain-like superfamily protein" /protein_id="EOY24982.1" /db_xref="Phytozome:POPTR_0014s09200.1" /db_xref="TAIR:AT5G53200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GV05" /translation="MDERPQKQAKILKSTSEEVSSIEWEFIKMTEQEEDLVYRIYRLV GDRWDLIAGRIPGRTAEEIERFWIMRHGEMFADKRDEEKAKVS" gene 32854230..32855126 /locus_tag="TCM_016429" /note="dbxref CacaoGD:Thecc1EG016429" mRNA join(32854230..32854823,32854911..32854932) /locus_tag="TCM_016429" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m010817" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2511t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2905t1" mRNA join(32854292..32854789,32854911..32855126) /locus_tag="TCM_016429" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010817" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2905t1" CDS join(32854379..32854789,32854911..32854916) /locus_tag="TCM_016429" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY24983.1" /translation="MASVQCCKPAEKSCCHQGHQDHSLSQKVSGMASSIFKGHGSHHS DGQPTECCGQTQGHCPHHTTSHTSQNQCMSQTNGHKTQHDASGTAMACQGKTKKRGEH KKRGLLQKIKDGISGDDSSSSSDSESDDDKCGTKKN" CDS 32854379..32854801 /locus_tag="TCM_016429" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY24984.1" /translation="MASVQCCKPAEKSCCHQGHQDHSLSQKVSGMASSIFKGHGSHHS DGQPTECCGQTQGHCPHHTTSHTSQNQCMSQTNGHKTQHDASGTAMACQGKTKKRGEH KKRGLLQKIKDGISGDDSSSSSDSESDDDKCGTKKASC" mobile_element complement(32855141..32855183) /note="source:INTACT73_F14_scaffold_4-int 1921 1968" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 32856982..32859731 /locus_tag="TCM_016430" /note="dbxref CacaoGD:Thecc1EG016430" mRNA join(32856982..32858479,32858598..32858808, 32859405..32859731) /locus_tag="TCM_016430" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2913t1" CDS join(32857310..32858479,32858598..32858621) /locus_tag="TCM_016430" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24985.1" /translation="MRTERGIPSSSLYIYILLHEVKSSSNSKFKRVGQNSRELAAAMA SVQLPKTTEKGLNQGYYGCSSFGQKVSDMANWACKATKRENKYQGPQNGYAVAYSESE CYSQIQHPIHGTKESQTAYAMAEFRDEYGRSYGSHKSQNGNAMSKTKVHGPGIGFGNH FSDGNQTSPGKGQNHGYGYGYGSAHGNQKNSGMGHGFSNHTSYEATEAYGYGSTHGNH KNSGKGHGFSNHANYETTEAYGYYDESNGYGNCANNGLAHSPAHHRGKHSGQRQEFIK AQAYGPSKNMDYGTTETETRHYAKTETHYANESHYYGGGRGFPAGNGSHCIGRAGCAP TCNGRECHAKPKNMGDHPVRGLLSKIKDGISGNRSDHGRGSGSDSDSDCDEYGKRKVW VSKAI" mobile_element complement(32858740..32858816) /note="source:scaffold_6_CACTA_0712 1429 1513" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32858766..32858850 /note="source:scaffold_5_CACTA_0596 7027 7116" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32858817..32858851) /note="source:CACAO_M_S_E16543_F3_scaffold_2 4754 4825" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32863502..32865049) /locus_tag="TCM_016432" /note="dbxref CacaoGD:Thecc1EG016432" mRNA complement(join(32863502..32863557,32863663..32863793, 32863916..32863957,32864775..32864831,32864988..32865049)) /locus_tag="TCM_016432" /product="Uncharacterized protein" /note="quality class is strong-expertchoice, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc794t2" CDS complement(join(32863508..32863557,32863663..32863714)) /locus_tag="TCM_016432" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24986.1" /translation="MRLLSHILEDGALEGGIGFERFEWSHASVRMWT" gene 32869959..32871504 /locus_tag="TCM_016435" /note="dbxref CacaoGD:Thecc1EG016435" mRNA 32869959..32871504 /locus_tag="TCM_016435" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage" CDS 32871076..32871360 /locus_tag="TCM_016435" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24987.1" /translation="MLKIERYPNPRRINIKTRSPYTPRTIYLRNTNSEVQPICITISL NLIRKMRNRVKCSIIITTDRRQQNHQITVNNLPTKHKIPDSADFNHDRFN" gene complement(32880908..32885940) /locus_tag="TCM_016439" /note="dbxref CacaoGD:Thecc1EG016439" mRNA complement(join(32880908..32881602,32881707..32881767, 32882360..32882434,32882811..32882875,32882960..32883042, 32883286..32883354,32885586..32885940)) /locus_tag="TCM_016439" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11216t3" CDS complement(join(32881451..32881602,32881707..32881767, 32882360..32882434,32882811..32882873)) /locus_tag="TCM_016439" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24988.1" /translation="MKRFGESLYPIRNLIVDSCKWAISSLRPKSFGLPSISLGLNFGS QQIVLGMDGDIVILLPLIRCDEVNYVVRMDRRFFWVPFLCYEFYISCFILELWKIFQY TVSACVVVAGFPNP" gene complement(32882622..32884415) /locus_tag="TCM_016440" /note="dbxref CacaoGD:Thecc1EG016440" mRNA complement(join(32882622..32882875,32882960..32884415)) /locus_tag="TCM_016440" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1540t4" CDS complement(32883899..32884180) /locus_tag="TCM_016440" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24989.1" /translation="MSVLMELGTKAWIFAGLYMIVWTLTLYAFFFYWKGRILLHEMCT IAGVAKKALPCIQKLSKDTKKPAINENIIQTYFKVAKDLSAIPKNTCHQ" mobile_element complement(32887443..32887549) /note="source:CACAO_Helitron_E78_scaffold_2 26 160" /mobile_element_type="transposon:Helitron" gene complement(32888963..32889757) /locus_tag="TCM_016441" /note="dbxref CacaoGD:Thecc1EG016441" mRNA complement(join(32888963..32889160,32889392..32889580, 32889700..32889757)) /locus_tag="TCM_016441" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc4506t1" CDS complement(join(32888994..32889160,32889392..32889461)) /locus_tag="TCM_016441" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24990.1" /translation="MELGMEGLGKYLCGRRDSLPGSFGSLGFSMLEYRLNSQGDWLPG SSHISLYSFCFGAFSSLWGYVTEHGMMLLTFLLF" mobile_element complement(32897529..32898603) /note="source:CACAO_on_E241_scaffold_112 4 1094" /mobile_element_type="transposon:TIR/hAT" gene complement(32898541..32903201) /locus_tag="TCM_016444" /note="dbxref CacaoGD:Thecc1EG016444" mRNA complement(join(32898541..32899274,32900498..32900709, 32901054..32901119,32901985..32902057,32902225..32902360, 32902479..32902540,32902656..32903201)) /locus_tag="TCM_016444" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019512001" /inference="similar to AA sequence:Phytozome:POPTR_0001s10500.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00026t00001" mRNA complement(join(32898859..32899274,32900498..32900709, 32901054..32901119,32901985..32902057,32902656..32903024)) /locus_tag="TCM_016444" /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019512001" /inference="similar to AA sequence:Phytozome:GSVIVT01019512001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00026t00004; inference alignment:Newbler:10:TSA:cgbaB_g00026t00001" CDS complement(join(32898908..32899274,32900498..32900709, 32901054..32901119,32901985..32902057,32902656..32902825)) /locus_tag="TCM_016444" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /protein_id="EOY24993.1" /db_xref="Phytozome:GSVIVT01019512001" /db_xref="TAIR:AT5G41850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ29" /translation="MASSRPSKRRRQDQTEDHHTDDTESPPESKLTLEKSSPVVVFAH GAGAPSSSDWMIRVSCMVAGREDIAASLIVCLGYPLKGMNGAVRDETLLQLTVPVMFV QGSKDGLCPLEKMEAVRKKMKAMSELHVIDGGDHSFKISKKHLQTKGSTQDEAEDAAV QATASFVSRSLTGRSFPLVAVAAAVLALLVLTLLLLGLLLMLRLFFLLFFLLLLFLYF LFLLSMASHGHGLSCMLLNVDAVGLGLGHGLRFTDTLSLSFDHLLVNFGLASAQVFMA HFVEGFLNGALALFCGHIN" CDS complement(join(32898908..32899274,32900498..32900709, 32901054..32901119,32901985..32902057,32902225..32902360, 32902479..32902540,32902656..32902825)) /locus_tag="TCM_016444" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY24991.1" /db_xref="Phytozome:POPTR_0001s10500.1" /db_xref="TAIR:AT5G41850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ29" /translation="MASSRPSKRRRQDQTEDHHTDDTESPPESKLTLEKSSPVVVFAH GAGAPSSSDWMIRWTKMLKKALNAVEVVTFDYPYISGGKRRAPPKAEKLVDFHSDIVK NAVSKYPGHPLILAGKSMGSRVSCMVAGREDIAASLIVCLGYPLKGMNGAVRDETLLQ LTVPVMFVQGSKDGLCPLEKMEAVRKKMKAMSELHVIDGGDHSFKISKKHLQTKGSTQ DEAEDAAVQATASFVSRSLTGRSFPLVAVAAAVLALLVLTLLLLGLLLMLRLFFLLFF LLLLFLYFLFLLSMASHGHGLSCMLLNVDAVGLGLGHGLRFTDTLSLSFDHLLVNFGL ASAQVFMAHFVEGFLNGALALFCGHIN" mRNA complement(join(<32899206..32899277,32900498..32900709, 32901054..32901119,32901985..32902057,32902225..32902360, 32902479..32902540,32902656..>32902991)) /locus_tag="TCM_016444" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019512001" /inference="similar to AA sequence:Phytozome:POPTR_0001s10500.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1126t8_C2; inference alignment:Newbler:10:TSA:cgbaB_g00026t00001" CDS complement(join(<32899208..32899277,32900498..32900709, 32901054..32901119,32901985..32902057,32902225..32902360, 32902479..32902540,32902656..>32902990)) /locus_tag="TCM_016444" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY24992.1" /db_xref="Phytozome:POPTR_0001s10500.1" /db_xref="TAIR:AT5G41850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ29" /translation="GAKRHRNIWPPAPRSLQIIFLGFPNCLTRSPKENFRSERVYLFE LGKGRGRGFQGMASSRPSKRRRQDQTEDHHTDDTESPPESKLTLEKSSPVVVFAHGAG APSSSDWMIRWTKMLKKALNAVEVVTFDYPYISGGKRRAPPKAEKLVDFHSDIVKNAV SKYPGHPLILAGKSMGSRVSCMVAGREDIAASLIVCLGYPLKGMNGAVRDETLLQLTV PVMFVQGSKDGLCPLEKMEAVRKKMKAMSELHVIDGGDHSFKISKKHLQTKGSTQDEA EDAAVQATASFVSRSLTGSRSFPLVAVAAAVLALLVLTLLLL" misc_feature join(32899265..32899290,32899392..32899474) /note="Gene fragment aasize:9; quality class is strong-expertchoice-cdspoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5827t3; dbxref CacaoGD:Thecc1EG016445t1" mobile_element 32904088..32904183 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4110 4206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32904104..32904185) /note="source:CACAO_M_E1809_F322_scaffold_1 716 800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32904785..32904871) /note="source:INTACT433_F212_scaffold_1-int 3051 3136" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(32906304..32907428) /locus_tag="TCM_016446" /note="dbxref CacaoGD:Thecc1EG016446" mRNA complement(join(32906304..32906907,32907023..32907170, 32907295..32907428)) /locus_tag="TCM_016446" /product="PA-domain containing subtilase family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010820" /inference="similar to AA sequence:Phytozome:POPTR_0001s10510.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01127t00002" CDS complement(join(32906845..32906907,32907023..32907170, 32907295..32907371)) /locus_tag="TCM_016446" /codon_start=1 /product="PA-domain containing subtilase family protein" /protein_id="EOY24994.1" /db_xref="Phytozome:POPTR_0001s10510.1" /translation="MGSTKTELYFVFMNYDPEYQRLRADRTKKGAYELDLYLSRKHDE LLAGTLQAGSYKKTLSLVIVDGFAVEITEAQANVLRSANGVRVVEKNQELA" gene complement(32909742..32911895) /locus_tag="TCM_016447" /note="dbxref CacaoGD:Thecc1EG016447" mRNA complement(join(32909742..32910713,32910918..32911895)) /locus_tag="TCM_016447" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019514001" /inference="similar to AA sequence:Phytozome:POPTR_0003s13870.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1552t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2775t1" CDS complement(join(32910163..32910713,32910918..32911353)) /locus_tag="TCM_016447" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY24995.1" /db_xref="Phytozome:POPTR_0003s13870.1" /db_xref="TAIR:AT5G58300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXH2" /translation="MLTRAFTKPKKSFKEYGEHSRSWSISEYDDGIVGLMDDIPLISC ENHGLPLTLKEVLRTSVGVMGANNREFTEKVVLSKGRLCALKRFRKVLVGKSEFGRRV ERLAQVCRKCEYLVPITAYLYTRRFKLVLCDYYPMGSLADLLEGGRRGQTALIWNERL MIIVYVARAIAFIHAQCPPSEKNMKMNVHGNIKSSNIMINIDLTALLSDYGFVQLADC VEDSDHTEGPGTGYCENLSEKSDIFNFGLVLLDVLGGVREPGFIECIVETKESIKLGK STFFEFDVQGRERRQALKVLDIALACTNRLAEARPSIEQILLNLGDILNSTK" gene 32912610..32914204 /locus_tag="TCM_016448" /note="dbxref CacaoGD:Thecc1EG016448" mRNA 32912610..32914204 /locus_tag="TCM_016448" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010822" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05979t00001_C1" CDS 32913118..32914044 /locus_tag="TCM_016448" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY24996.1" /translation="MLIQKVRLPKVFNNDSWTALSSPVSFSHVLGHPVARFRHHRHSW SKPHSLYKSPFLNVNQNPLILFFAFTKKKKEMARLAVAFTVIFLFTFSSHARFLTAEQ EHDVTLEETETKLPESNPKTTNAIFLPSEKPGFESAEVVDFKPDDALETVSEVDLAPL TKISFRPVNRHFPRRPMIPFRHKHNCRFHKRFRPLNPRLQQKRYISYGDDMILSDEKS QFDPESRGVVRQIQPRWARFRDDGTESEDLDFIKPHHHDHDHEHEHDHDDHHHHHHHH RRHHHGEEDEKDEREEHEGGFMRRFRKFFIHF" gene complement(32914228..32919301) /locus_tag="TCM_016449" /note="dbxref CacaoGD:Thecc1EG016449" mRNA complement(join(32914228..32915047,32915566..32915636, 32916232..32916406,32916773..32916893,32918551..32919301)) /locus_tag="TCM_016449" /product="Pectin lyase-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019516001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004948t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s13890.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11405t1" CDS complement(join(32914407..32915047,32915566..32915636, 32916232..32916406,32916773..32916893,32918551..32918889)) /locus_tag="TCM_016449" /note="paralog of Thecc1EG004948t2" /codon_start=1 /product="Pectin lyase-like superfamily protein" /protein_id="EOY24997.1" /db_xref="Phytozome:POPTR_0003s13890.1" /db_xref="TAIR:AT4G23820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ27" /translation="MFRALGSIWLCCFFLQVSLFFYVSYGNLITCSGIVPMRYRNDKI SITDFGGVGDGRTLNTKAFRAAIYRIQHLRRRGGTLLYVPPGVYLTESFNLTSHMTLY LARGAVIKATQDTWNWPLIAPLPSYGRGREHPGGRYMSFIHGDGLRDVVITGENGTID GEGAIWWNMWRQRTLQFTRPNLVEFVNSRGIIISNVIFRNSPFWNIHPVYCSNVVIRY VTILAPPDSPNTDGIDPDSSSNVCIEDSFISTGDDLVAVKSGWDEYGIAYGRPSSCIT IRRVTGTSPFSGIAVGSETSGGVENVLAENIVLYNTGIGVNVKTNIGRGGFIKNITVS EVFMENVRTGIKIAGDTGDHPDNNFNPNALPYVKGVTFKNIWGVKVQRAGSIQGLKNA PFTGICLSKVNLHGTTGPGSPPWKCSDVSGAAIEVSPWPCAELTSPQQSGSCASPF" mobile_element complement(32919647..32920060) /note="source:MITE_PIF_Tourist_9 1 424" /mobile_element_type="transposon:TIR/MITE" gene complement(32922070..32924677) /locus_tag="TCM_016450" /note="dbxref CacaoGD:Thecc1EG016450" mRNA complement(join(32922070..32922578,32923498..32923713, 32924524..32924677)) /locus_tag="TCM_016450" /product="Regulatory components of ABA receptor 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015359t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13900.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10219t1" CDS complement(join(32922360..32922578,32923498..32923713, 32924524..32924670)) /locus_tag="TCM_016450" /note="paralog of Thecc1EG015359t1" /codon_start=1 /product="Regulatory components of ABA receptor 3" /protein_id="EOY24998.1" /db_xref="Phytozome:POPTR_0003s13900.1" /db_xref="TAIR:AT5G53160.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGM1" /translation="MVTNDYITMNGNGFSKMEEEFIKRHHKHDVKENQCTSSLVKHIK APIHLVWSLVRRFDQPQKYKPFVSRCVVQGDLQIGSVREVNVKSGLPATTSTERLEYL DDDEHILSMKIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETC YFVEALIKCNLKSLADVSERLAVQDRTEPIERM" gene 32925103..32929993 /locus_tag="TCM_016451" /note="dbxref CacaoGD:Thecc1EG016451" mRNA join(32925103..32925338,32925465..32925515, 32925631..32925806,32925882..32925959,32926076..32926187, 32926437..32926521,32926621..32926672,32926753..32926814, 32926896..32927011,32927093..32927214,32927901..32927969, 32928180..32928237,32928597..32928670,32928898..32928946, 32929239..32929773) /locus_tag="TCM_016451" /product="DNA primase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10380.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019518001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11316t2" mRNA join(32925126..32925338,32925465..32925515, 32925631..32925806,32925882..32925959,32926076..32926187, 32926437..32926521,32926621..32926672,32926753..32926814, 32926896..32927008,32927093..32927214,32927901..32927969, 32928180..32928237,32928597..32928670,32928898..32928946, 32929239..32929993) /locus_tag="TCM_016451" /product="DNA primase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10380.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019518001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc892t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11316t2" mRNA join(32925126..32925338,32925465..32925515, 32925631..32925806,32925882..32925959,32926076..32926187, 32926437..32926521,32926621..32926672,32926753..32926814, 32926896..32927008,32927093..32927211,32927899..32927969, 32928180..32928237,32928597..32928623) /locus_tag="TCM_016451" /product="DNA primase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10380.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019518001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc896t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11316t2" CDS join(32925227..32925338,32925465..32925515, 32925631..32925806,32925882..32925959,32926076..32926187, 32926437..32926521,32926621..32926672,32926753..32926814, 32926896..32927011,32927093..32927214,32927901..32927969, 32928180..32928237,32928597..32928670,32928898..32928946, 32929239..32929381) /locus_tag="TCM_016451" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA primase isoform 1" /protein_id="EOY24999.1" /db_xref="Phytozome:GSVIVT01019518001" /db_xref="TAIR:AT5G41880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JZZ1" /translation="MTKDEVENGRDDMLIDGPEQANAVPDGFNANYLRIYYGKLFPHA DIFKWMSYGNDGKHPACDKSYIGRREFSFTLENDIYIRFQSFNSASELENSIKEKCPF KIDIGPVYSVDPAKRHAYAQSGDNVFTPVERELVFDIDITDYDDVRYCCTGADVCLEC WPLMTIAIKVIDTALRDDFGFNHILWVYSGRRGVHCWVCDGKARRLTNEQRAAIADYF RVYQGNENSNKKISLPGHVLHPFLARSYTEVLKGFFEAKLLSNQNLLSSEERYEKILE MIPDGSVAAELRGRWQEKKRSSMLKNDINVVRWEQLKHALQSGKQKAQGLRRCVEEIV FSFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNNCDEFDPTKVPTLSQLLE ELNRGGLRQDAEDEWDRTSLGESVTFFRSSFLHPLLKSCKEEIESSYNTKLQQAKNTL SW" CDS join(32925227..32925338,32925465..32925515, 32925631..32925806,32925882..32925959,32926076..32926187, 32926437..32926521,32926621..32926672,32926753..32926814, 32926896..32927008,32927093..32927214,32927901..32927969, 32928180..32928237,32928597..32928670,32928898..32928946, 32929239..32929381) /locus_tag="TCM_016451" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA primase isoform 2" /protein_id="EOY25000.1" /db_xref="Phytozome:GSVIVT01019518001" /db_xref="TAIR:AT5G41880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JZZ1" /translation="MTKDEVENGRDDMLIDGPEQANAVPDGFNANYLRIYYGKLFPHA DIFKWMSYGNDGKHPACDKSYIGRREFSFTLENDIYIRFQSFNSASELENSIKEKCPF KIDIGPVYSVDPAKRHAYAQSGDNVFTPVERELVFDIDITDYDDVRYCCTGADVCLEC WPLMTIAIKVIDTALRDDFGFNHILWVYSGRRGVHCWVCDGKARRLTNEQRAAIADYF RVYQGNENSNKKISLPGHVLHPFLARSYTEVLKGFFEAKLLSNQNLLSSEERYEKILE MIPDAVAAELRGRWQEKKRSSMLKNDINVVRWEQLKHALQSGKQKAQGLRRCVEEIVF SFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNNCDEFDPTKVPTLSQLLEE LNRGGLRQDAEDEWDRTSLGESVTFFRSSFLHPLLKSCKEEIESSYNTKLQQAKNTLS W" CDS join(32925227..32925338,32925465..32925515, 32925631..32925806,32925882..32925959,32926076..32926187, 32926437..32926521,32926621..32926672,32926753..32926814, 32926896..32927008,32927093..32927211,32927899..32927969, 32928180..32928195) /locus_tag="TCM_016451" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DNA primase isoform 3" /protein_id="EOY25001.1" /db_xref="Phytozome:GSVIVT01019518001" /db_xref="TAIR:AT5G41880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9FP48" /translation="MTKDEVENGRDDMLIDGPEQANAVPDGFNANYLRIYYGKLFPHA DIFKWMSYGNDGKHPACDKSYIGRREFSFTLENDIYIRFQSFNSASELENSIKEKCPF KIDIGPVYSVDPAKRHAYAQSGDNVFTPVERELVFDIDITDYDDVRYCCTGADVCLEC WPLMTIAIKVIDTALRDDFGFNHILWVYSGRRGVHCWVCDGKARRLTNEQRAAIADYF RVYQGNENSNKKISLPGHVLHPFLARSYTEVLKGFFEAKLLSNQNLLSSEERYEKILE MIPDAVAAELRGRWQEKKRSSMLKNDINVVRWEQLKHALQSGKQRHKDYEDVLKRLSF LSRTLGLIWRFRST" gene complement(32930056..32931825) /locus_tag="TCM_016452" /note="dbxref CacaoGD:Thecc1EG016452" mRNA complement(32930056..32931825) /locus_tag="TCM_016452" /product="AP2/ERF domain-containing transcription factor, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13910.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13910.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11332t1" CDS complement(32930488..32931420) /locus_tag="TCM_016452" /codon_start=1 /product="AP2/ERF domain-containing transcription factor, putative" /protein_id="EOY25002.1" /db_xref="Phytozome:POPTR_0003s13910.1" /db_xref="TAIR:AT1G64380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXH6" /translation="MQDNNLPFGFNNSADIGSSLSQIILSGGSNTLDSIFSHCAQSTT TSTAMNTNSVYEPLGSSVYLRQRDLLSKFCQESKGNALVSRNSLTKLQSYRNPASSSN YTSPQKKKKLYRGVRQRHWGKWVAEIRLPQNRTRVWLGTYETAEAAAYAYDRAAYKLR GEYARLNFPNLKDPSKLGFRDSARLNALKNMVDAKIQAICQKVKRERANAKKKSNSDR PAASSEAEKEVNVTESCSSSSSLSRAVFSDNLSNELLSPTVSKDGFWRCENSPSSVSN DYPMMMAEEPGFEDCSLARMPSFDAELIWEILAN" gene complement(32931876..32935109) /locus_tag="TCM_016453" /note="dbxref CacaoGD:Thecc1EG016453" mRNA complement(join(32931876..32932776,32933059..32933076, 32933258..32933340,32933538..32933652,32934704..32935109)) /locus_tag="TCM_016453" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.11 coverage" CDS complement(join(32932708..32932776,32933059..32933076, 32933258..32933340,32933538..32933652,32934704..32934778)) /locus_tag="TCM_016453" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25003.1" /translation="MRKRHVLVEKKPQRLTCRVQETGPLGKPCARIVVDKQFLPENKY ESSVDSLDIELVSFRNLFPRLLSWKGSQIKVLHLSNIRFDFITVWKKRKKRTESIRDV FARCEITVYTLSALLHR" gene 32938358..32942311 /locus_tag="TCM_016454" /note="dbxref CacaoGD:Thecc1EG016454" mRNA join(32938358..32938745,32938830..32938947, 32939033..32939717,32940019..32940146,32941003..32942311) /locus_tag="TCM_016454" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400021751" /inference="similar to AA sequence:Phytozome:GSVIVT01019521001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00547t00002" mRNA join(32938656..32938745,32938830..32938947, 32939033..32939717,32940019..32940146,32941003..32941119, 32941190..32942122) /locus_tag="TCM_016454" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400021751" /inference="similar to AA sequence:Phytozome:GSVIVT01019521001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11342t2; inference alignment:Newbler:10:TSA:cgbaB_g00547t00002" CDS join(32938870..32938947,32939033..32939717, 32940019..32940146,32941003..32941443) /locus_tag="TCM_016454" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25004.1" /db_xref="Phytozome:GSVIVT01019521001" /db_xref="TAIR:AT1G64385.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TVF0" /translation="METNYVLLMGLFLLLVAVDCSSSDPKGNVNEENGLDQNVDDIVD PVNGKNVLKSASDSIEANKVNVKANERDQIDKSGIESGTSKSNLNQQSGSNEGENLQK DGQESSAEAKAKTDGKNEGDNMPEGQGESNVEAKGKMDGENEGDNVHNKSQEESNVEA KGKMDGETEGDNVHKDHEKSNAEAKGKADGGKKENLGDSVDPKELTVKKDNAQDSVPP PPPTRTDGFRGEECDPSNMCMDKNERFAACLRVPGNESPDLSLLIQNKGKGPLTIKIS APAFVQLEETDVELQEKQDKKVKVSIKDSGTGNLIVLKDGRGECSLDFKDLIVHNSAE SYVNFLSQTPTTTLIFVAAILILASGWMCMSFKRRQLARSGLKYQRLDMELPVSAGAK TEPDVNDGWDNSWGNNWEDEEAPMTPLMPVTPSLSSKGLASRRLSKEGWKD" CDS join(32938870..32938947,32939033..32939717, 32940019..32940146,32941003..32941119,32941190..32941204) /locus_tag="TCM_016454" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY25005.1" /db_xref="Phytozome:GSVIVT01019521001" /db_xref="TAIR:AT1G64385.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TVF0" /translation="METNYVLLMGLFLLLVAVDCSSSDPKGNVNEENGLDQNVDDIVD PVNGKNVLKSASDSIEANKVNVKANERDQIDKSGIESGTSKSNLNQQSGSNEGENLQK DGQESSAEAKAKTDGKNEGDNMPEGQGESNVEAKGKMDGENEGDNVHNKSQEESNVEA KGKMDGETEGDNVHKDHEKSNAEAKGKADGGKKENLGDSVDPKELTVKKDNAQDSVPP PPPTRTDGFRGEECDPSNMCMDKNERFAACLRVPGNESPDLSLLIQNKGKGPLTIKIS APAFVQLEETDVELQEKQDKKVKVSIKDSGTGNLIVLKDGRGECSLDFKDLIVHNSAE SYVGCA" gene 32948140..32952827 /locus_tag="TCM_016455" /note="dbxref CacaoGD:Thecc1EG016455" mRNA join(32948140..32948858,32952586..32952827) /locus_tag="TCM_016455" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" CDS 32948338..32948574 /locus_tag="TCM_016455" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25006.1" /translation="MHELGLESQPYGMNEPSGQAPCSDSTWSSYVEVDQAKEFNISIS SHSTSNVSLMMKISNKIKLNYSIEKNFYCNETIS" gene 32953130..32957933 /locus_tag="TCM_016456" /note="dbxref CacaoGD:Thecc1EG016456" mRNA join(32953130..32953623,32953785..32953997, 32954383..32954583,32955445..32955534,32955659..32955823, 32955996..32956280,32956385..32956733,32956820..32956894, 32957065..32957933) /locus_tag="TCM_016456" /product="Glycosyl hydrolase 9C2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g02610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002159t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10560.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11443t2" CDS join(32953420..32953623,32953785..32953997, 32954383..32954583,32955445..32955534,32955659..32955823, 32955996..32956280,32956385..32956733,32956820..32956894, 32957065..32957363) /locus_tag="TCM_016456" /note="paralog of Thecc1EG002159t1" /codon_start=1 /product="Glycosyl hydrolase 9C2" /protein_id="EOY25007.1" /db_xref="Phytozome:POPTR_0001s10560.1" /db_xref="TAIR:AT1G64390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42059" /translation="MEKLMRLISMAPLLLLLCLPFAFAGHDYNQALSKSILFFEAQRS GYLPHSQRVTWRASSGLNDGKASGVDLVGGYYDAGDNVKFGLPMAFTITMMSWSIIEY GKQMAASGELGNALEAVKWGTDYLIKAHPEPYVLYGEVGDGNSDHYCWQRPEDMTTDR HAYKIDPSNPGSDLAGETAAAMAAASIVFRRSNPAYSSELLRHAYQLFEFADKYRGKY DSSITVAQKYYRSVSGYNDELLWAAAWLYQASNNQYYLNYLGKNGDSMGGTGWAMTEF SWDVKYAGVQTLVAKFLMQGKAGLHAPVFERYHQRAEYFMCSLIGKGSRNIQKTPGGL IFRQRWNNMQFVTSASFLATVYSDYLTSSRGSLNCAAGNVAPSELLSFAKSQVDYLLG DNPRATSYMVGYGNNYPRQVHHRGSSIVSIKVDPTFVACRQGYANWYTRKASDPNVLT GALVGGPDAYDNFADERDNYEQTEPATYNNAPLLGILARLGGGHGGYNQLLPVVVPAP NPVVAKPKPAPKPKLTPTPASSSSPITIKQKMTTSWNHKGKTYYRYSTVVTNNSYKTV KDLKLSISKLYGPLWGLTKSGNSYGFPSWLNSLPAAKSLEFVYIHSASPADVSVSTYN LA" gene complement(32958830..32961057) /locus_tag="TCM_016457" /note="dbxref CacaoGD:Thecc1EG016457" mRNA complement(join(32958830..32959609,32959695..32959800, 32960216..32961057)) /locus_tag="TCM_016457" /product="Highly ABA-induced PP2C gene 3, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019525001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015368t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019525001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09666t00001" CDS complement(join(32959308..32959609,32959695..32959800, 32960216..32960797)) /locus_tag="TCM_016457" /note="paralog of Thecc1EG015368t1" /codon_start=1 /product="Highly ABA-induced PP2C gene 3, putative" /protein_id="EOY25008.1" /db_xref="Phytozome:GSVIVT01019525001" /db_xref="TAIR:AT2G29380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TVF2" /translation="MKGYKSKRRIGSEVVMDVDVTKKKRGIKKFTQRSEKEQEKREEN KVESVTCVSHGSISVIGRRRAMEDAVKVSVGEIQGYDFFAVYDGHGGAQVANACRDRM HQLVVKEVEERTRGGKGPEWEKVMAACFAKMDEEVSGEDYQGGAGDVDMKTMGSTAVV VLVGRDVVVVANCGDSRAVLCRGGTAVALSSDHKPDRPDERERVEAAGGTVINWNGSR VLGVLATSRSIGDQHLKPYVISKPEVSVTERTKSDNFLVLASDGLWDVVSSEIACEVV KRHLDGRIKMRFSDDPQGCTGDRAAEAAAMLAELAVARGSTDNISVIVVELKR" gene 32962590..32967500 /locus_tag="TCM_016458" /note="dbxref CacaoGD:Thecc1EG016458" mRNA join(32962590..32962868,32963089..32963243, 32963490..32963707,32964250..32964859,32965057..32965566, 32965673..32967500) /locus_tag="TCM_016458" /product="Leucine-rich repeat family protein, putative isoform 5" /inference="alignment:exonerate- protein:2:ricco:30190.m010830" /inference="similar to AA sequence:Phytozome:POPTR_0001s10580.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11338t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11338t2" mRNA join(32962590..32962868,32963089..32963243, 32963490..32963707,32964250..32964859,32965057..32965566, 32965676..32967500) /locus_tag="TCM_016458" /product="Leucine-rich repeat family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010830" /inference="similar to AA sequence:Phytozome:POPTR_0001s10580.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11338t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11338t2" CDS join(32962687..32962868,32963089..32963243, 32963490..32963707,32964250..32964859,32965057..32965566, 32965673..32965797) /locus_tag="TCM_016458" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat family protein, putative isoform 5" /protein_id="EOY25013.1" /db_xref="Phytozome:POPTR_0001s10580.1" /db_xref="TAIR:AT4G23840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EHK1" /translation="MEMEKESELVRRCIEAACRSRESVEKWRRQRRTLERLPSHLSQS LLQNLLRSRILFPSLLEVFKYSVEEIDLRGENCVDAEWMAYLGAFRYLRSLNLADCHR INNSALWSLVGMTSLKEVDLSRCMKVTDASIRHLLSISTLEKLWISETGITANGVALL SSLKNLSVLDLGGLPVTDTVLNSLQALTKLQHLDLWGSKISNKGALVLQRFSKLSFLN IAWTNVTILPNLSSLECLNMSNCTIDSILEDDDDKAPLVKLIFAGATFMNEAEAFLYI ETRFLSLLDVSNSSLNQFCFLPDMKMLEHLDLSSSMMGDDSVELIVCIGASLKILNLS GTKVSSAGIAILAGHVPKLEFLSLSHTSIDDVALSYVSSMPSLKVIDLSNTDIKGYIH QPGTELHKDSTLAALQNLRYLENLNLEHTQVRDPDLYPLSSCKELGHLSLKCASLTDA TLHHLSSLPKLTNLRVCEAVLTNSGLDTFSPPTTLRMLDLMGCWLLTEDAISTFTRKH PQIEIRHEVVQILSTEQQNISNRASPSQLRLKTSRGNNKPGKVPISQFFVVDQRLKYS REELLSLQFPPLTLQSPHDSGIEIPKLQSDRLN" CDS join(32962687..32962868,32963089..32963243, 32963490..32963707,32964250..32964859,32965057..32965566, 32965676..32965797) /locus_tag="TCM_016458" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat family protein, putative isoform 1" /protein_id="EOY25009.1" /db_xref="Phytozome:POPTR_0001s10580.1" /db_xref="TAIR:AT4G23840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EHK1" /translation="MEMEKESELVRRCIEAACRSRESVEKWRRQRRTLERLPSHLSQS LLQNLLRSRILFPSLLEVFKYSVEEIDLRGENCVDAEWMAYLGAFRYLRSLNLADCHR INNSALWSLVGMTSLKEVDLSRCMKVTDASIRHLLSISTLEKLWISETGITANGVALL SSLKNLSVLDLGGLPVTDTVLNSLQALTKLQHLDLWGSKISNKGALVLQRFSKLSFLN IAWTNVTILPNLSSLECLNMSNCTIDSILEDDDDKAPLVKLIFAGATFMNEAEAFLYI ETRFLSLLDVSNSSLNQFCFLPDMKMLEHLDLSSSMMGDDSVELIVCIGASLKILNLS GTKVSSAGIAILAGHVPKLEFLSLSHTSIDDVALSYVSSMPSLKVIDLSNTDIKGYIH QPGTELHKDSTLAALQNLRYLENLNLEHTQVRDPDLYPLSSCKELGHLSLKCASLTDA TLHHLSSLPKLTNLRVCEAVLTNSGLDTFSPPTTLRMLDLMGCWLLTEDAISTFTRKH PQIEIRHEVVQILSTEQQNISNRASPSQLRLKTSRGNNKPGKVPISQFFVDQRLKYSR EELLSLQFPPLTLQSPHDSGIEIPKLQSDRLN" mRNA join(32962743..32962868,32963089..32963243, 32963490..32963707,32964250..32964859,32965057..32965566, 32965676..32966230) /locus_tag="TCM_016458" /product="Leucine-rich repeat family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m010830" /inference="similar to AA sequence:Phytozome:POPTR_0001s10580.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc840t13; alternateUTRof:Thecc1EG016458t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11338t2" mRNA join(32962806..32962868,32963089..32963243, 32963490..32963707,32964250..32964859,32965057..32965566, 32965676..32966232,32966316..32966617) /locus_tag="TCM_016458" /product="Leucine-rich repeat family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m010830" /inference="similar to AA sequence:Phytozome:POPTR_0001s10580.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc847t7; alternateUTRof:Thecc1EG016458t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11338t2" mRNA join(32962806..32962868,32963089..32963243, 32963490..32963707,32964250..32964859,32965057..32965566, 32965676..32966232,32966316..32966434,32966526..32966617) /locus_tag="TCM_016458" /product="Leucine-rich repeat family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m010830" /inference="similar to AA sequence:Phytozome:POPTR_0001s10580.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc847t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11338t2" CDS join(32963153..32963243,32963490..32963707, 32964250..32964859,32965057..32965566,32965676..32965797) /locus_tag="TCM_016458" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat family protein, putative isoform 2" /protein_id="EOY25010.1" /db_xref="Phytozome:POPTR_0001s10580.1" /db_xref="TAIR:AT4G23840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EHK1" /translation="MAYLGAFRYLRSLNLADCHRINNSALWSLVGMTSLKEVDLSRCM KVTDASIRHLLSISTLEKLWISETGITANGVALLSSLKNLSVLDLGGLPVTDTVLNSL QALTKLQHLDLWGSKISNKGALVLQRFSKLSFLNIAWTNVTILPNLSSLECLNMSNCT IDSILEDDDDKAPLVKLIFAGATFMNEAEAFLYIETRFLSLLDVSNSSLNQFCFLPDM KMLEHLDLSSSMMGDDSVELIVCIGASLKILNLSGTKVSSAGIAILAGHVPKLEFLSL SHTSIDDVALSYVSSMPSLKVIDLSNTDIKGYIHQPGTELHKDSTLAALQNLRYLENL NLEHTQVRDPDLYPLSSCKELGHLSLKCASLTDATLHHLSSLPKLTNLRVCEAVLTNS GLDTFSPPTTLRMLDLMGCWLLTEDAISTFTRKHPQIEIRHEVVQILSTEQQNISNRA SPSQLRLKTSRGNNKPGKVPISQFFVDQRLKYSREELLSLQFPPLTLQSPHDSGIEIP KLQSDRLN" CDS join(32963153..32963243,32963490..32963707, 32964250..32964859,32965057..32965566,32965676..32965797) /locus_tag="TCM_016458" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat family protein, putative isoform 2" /protein_id="EOY25011.1" /db_xref="Phytozome:POPTR_0001s10580.1" /db_xref="TAIR:AT4G23840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EHK1" /translation="MAYLGAFRYLRSLNLADCHRINNSALWSLVGMTSLKEVDLSRCM KVTDASIRHLLSISTLEKLWISETGITANGVALLSSLKNLSVLDLGGLPVTDTVLNSL QALTKLQHLDLWGSKISNKGALVLQRFSKLSFLNIAWTNVTILPNLSSLECLNMSNCT IDSILEDDDDKAPLVKLIFAGATFMNEAEAFLYIETRFLSLLDVSNSSLNQFCFLPDM KMLEHLDLSSSMMGDDSVELIVCIGASLKILNLSGTKVSSAGIAILAGHVPKLEFLSL SHTSIDDVALSYVSSMPSLKVIDLSNTDIKGYIHQPGTELHKDSTLAALQNLRYLENL NLEHTQVRDPDLYPLSSCKELGHLSLKCASLTDATLHHLSSLPKLTNLRVCEAVLTNS GLDTFSPPTTLRMLDLMGCWLLTEDAISTFTRKHPQIEIRHEVVQILSTEQQNISNRA SPSQLRLKTSRGNNKPGKVPISQFFVDQRLKYSREELLSLQFPPLTLQSPHDSGIEIP KLQSDRLN" CDS join(32963153..32963243,32963490..32963707, 32964250..32964859,32965057..32965566,32965676..32965797) /locus_tag="TCM_016458" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat family protein, putative isoform 2" /protein_id="EOY25012.1" /db_xref="Phytozome:POPTR_0001s10580.1" /db_xref="TAIR:AT4G23840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EHK1" /translation="MAYLGAFRYLRSLNLADCHRINNSALWSLVGMTSLKEVDLSRCM KVTDASIRHLLSISTLEKLWISETGITANGVALLSSLKNLSVLDLGGLPVTDTVLNSL QALTKLQHLDLWGSKISNKGALVLQRFSKLSFLNIAWTNVTILPNLSSLECLNMSNCT IDSILEDDDDKAPLVKLIFAGATFMNEAEAFLYIETRFLSLLDVSNSSLNQFCFLPDM KMLEHLDLSSSMMGDDSVELIVCIGASLKILNLSGTKVSSAGIAILAGHVPKLEFLSL SHTSIDDVALSYVSSMPSLKVIDLSNTDIKGYIHQPGTELHKDSTLAALQNLRYLENL NLEHTQVRDPDLYPLSSCKELGHLSLKCASLTDATLHHLSSLPKLTNLRVCEAVLTNS GLDTFSPPTTLRMLDLMGCWLLTEDAISTFTRKHPQIEIRHEVVQILSTEQQNISNRA SPSQLRLKTSRGNNKPGKVPISQFFVDQRLKYSREELLSLQFPPLTLQSPHDSGIEIP KLQSDRLN" gene complement(32965674..32975883) /locus_tag="TCM_016459" /note="dbxref CacaoGD:Thecc1EG016459" mRNA complement(join(32965674..32966229,32966313..32966432, 32966524..32966706,32966957..32967096,32967187..32967432, 32967546..32967663,32967800..32967875,32968263..32968329, 32968640..32968727,32968807..32968917,32969010..32969177, 32969681..32969775,32969888..32969927,32970177..32970253, 32970475..32970523,32970674..32970730,32970866..32970955, 32971066..32971129,32971781..32972114)) /locus_tag="TCM_016459" /product="AMP-dependent synthetase and ligase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006299t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13950.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11340t3; alternateUTRof:Thecc1EG016459t1; inference alignment:Newbler:10:TSA:cgbaL_g03528t00001" mRNA complement(join(32965931..32966229,32966313..32966432, 32966524..32966706,32966957..32967096,32967187..32967432, 32967546..32967663,32967800..32967875,32968263..32968329, 32968640..32968727,32968807..32968917,32969010..32969177, 32969681..32969775,32969888..32969927,32970177..32970253, 32970475..32970523,32970674..32970730,32970866..32970955, 32971066..32971129,32971781..32972244,32975864..32975883)) /locus_tag="TCM_016459" /product="AMP-dependent synthetase and ligase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006299t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13950.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03528t00001" CDS complement(join(32966182..32966229,32966313..32966432, 32966524..32966706,32966957..32967096,32967187..32967432, 32967546..32967663,32967800..32967875,32968263..32968329, 32968640..32968727,32968807..32968917,32969010..32969177, 32969681..32969775,32969888..32969927,32970177..32970253, 32970475..32970523,32970674..32970730,32970866..32970955, 32971066..32971129,32971781..32971932)) /locus_tag="TCM_016459" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG006299t1" /codon_start=1 /product="AMP-dependent synthetase and ligase family protein isoform 1" /protein_id="EOY25014.1" /db_xref="Phytozome:POPTR_0003s13950.1" /db_xref="TAIR:AT4G23850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T0A0" /translation="MANKSYIIEVEKGKAASDGKPSIGPVYRSSFAQNGFPAPIPGLE SCWDIFRMSVEKYPDNPMLGRLQIVNGKAGKYVWQTYKEVYDIVINVGNSIRGCGVEE GGKCGIFGANCPEWIISMEACNAHGLCCVPLYDTLGASAVEFIICHAEVSIAFVEEKK INELFKTCPNSTNYLRTIVSFGKVTPEQKEEAEKYGLAIYAWEEFLQLGENKRFDLPV KKKSDICTIMYTSGTTGDPKGVLISNDSIVTFIAGVKRLLERVNEQLTVKDVYLSYLP LAHIFDRVIEELFISLGASIGFWRGDVKLLVEDIGELKPTFFCAVPRVLDRIYSGLLQ KISGGGLLKKKLFDVAYSYKYYNMRKGSNHREASPICDKVVFSKVKQGLGGRVRIILS GAAPLSAHVEEFLRVVACCHVLQGYGLTESCAGTFVSLPDELSMLGTVGPPVPNVDIR LESVPEMGYDALASTPRGEICIKGSTLFSGYYKREDLTNEVMVDEWFHTGDIGEWQPN GSMKVIDRKKNIFKLSQGEYVAVENLENIYGLVSDIDSIWVYGNSFESFLVAVVNPNK QALERWAAENGVGGDFDSLCQNPKAKEFILGELAKIGKEKKLKGFEFIKAVHLDPEPF DIERDLLTPTYKKKRPQLLKYYQTVIDNMYKAARKPNA" CDS complement(join(32966182..32966229,32966313..32966432, 32966524..32966706,32966957..32967096,32967187..32967432, 32967546..32967663,32967800..32967875,32968263..32968329, 32968640..32968727,32968807..32968917,32969010..32969177, 32969681..32969775,32969888..32969927,32970177..32970253, 32970475..32970523,32970674..32970730,32970866..32970955, 32971066..32971129,32971781..32971932)) /locus_tag="TCM_016459" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG006299t1" /codon_start=1 /product="AMP-dependent synthetase and ligase family protein isoform 1" /protein_id="EOY25015.1" /db_xref="Phytozome:POPTR_0003s13950.1" /db_xref="TAIR:AT4G23850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T0A0" /translation="MANKSYIIEVEKGKAASDGKPSIGPVYRSSFAQNGFPAPIPGLE SCWDIFRMSVEKYPDNPMLGRLQIVNGKAGKYVWQTYKEVYDIVINVGNSIRGCGVEE GGKCGIFGANCPEWIISMEACNAHGLCCVPLYDTLGASAVEFIICHAEVSIAFVEEKK INELFKTCPNSTNYLRTIVSFGKVTPEQKEEAEKYGLAIYAWEEFLQLGENKRFDLPV KKKSDICTIMYTSGTTGDPKGVLISNDSIVTFIAGVKRLLERVNEQLTVKDVYLSYLP LAHIFDRVIEELFISLGASIGFWRGDVKLLVEDIGELKPTFFCAVPRVLDRIYSGLLQ KISGGGLLKKKLFDVAYSYKYYNMRKGSNHREASPICDKVVFSKVKQGLGGRVRIILS GAAPLSAHVEEFLRVVACCHVLQGYGLTESCAGTFVSLPDELSMLGTVGPPVPNVDIR LESVPEMGYDALASTPRGEICIKGSTLFSGYYKREDLTNEVMVDEWFHTGDIGEWQPN GSMKVIDRKKNIFKLSQGEYVAVENLENIYGLVSDIDSIWVYGNSFESFLVAVVNPNK QALERWAAENGVGGDFDSLCQNPKAKEFILGELAKIGKEKKLKGFEFIKAVHLDPEPF DIERDLLTPTYKKKRPQLLKYYQTVIDNMYKAARKPNA" mRNA complement(join(<32967186..32967432,32967546..32967661, 32968308..32968329,32968640..32968727,32968807..32968917, 32969010..32969177,32969681..32969775,32969888..32969927, 32970177..32970253,32970475..32970523,32970674..32970730, 32970866..32970955,32971066..32971129,32971781..32972151)) /locus_tag="TCM_016459" /product="AMP-dependent synthetase and ligase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006299t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s13950.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc840t10_C2; inference alignment:Newbler:10:TSA:cgbaL_g03528t00001" CDS complement(join(<32967188..32967432,32967546..32967661, 32968308..32968329,32968640..32968727,32968807..32968917, 32969010..32969177,32969681..32969775,32969888..32969927, 32970177..32970253,32970475..32970523,32970674..32970730, 32970866..32970955,32971066..32971129,32971781..32971932)) /locus_tag="TCM_016459" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG006299t2" /codon_start=1 /product="AMP-dependent synthetase and ligase family protein isoform 3" /protein_id="EOY25016.1" /db_xref="Phytozome:POPTR_0003s13950.1" /db_xref="TAIR:AT4G23850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T0A0" /translation="MANKSYIIEVEKGKAASDGKPSIGPVYRSSFAQNGFPAPIPGLE SCWDIFRMSVEKYPDNPMLGRLQIVNGKAGKYVWQTYKEVYDIVINVGNSIRGCGVEE GGKCGIFGANCPEWIISMEACNAHGLCCVPLYDTLGASAVEFIICHAEVSIAFVEEKK INELFKTCPNSTNYLRTIVSFGKVTPEQKEEAEKYGLAIYAWEEFLQLGENKRFDLPV KKKSDICTIMYTSGTTGDPKGVLISNDSIVTFIAGVKRLLERVNEQLTVKDVYLSYLP LAHIFDRVIEELFISLGASIGFWRGDVKLLVEDIGELKPTFFCAVPRVLDRIYSGLLQ KISGKQGLGGRVRIILSGAAPLSAHVEEFLRVVACCHVLQGYGLTESCAGTFVSLPDE LSMLGTVGPPVPNVDIRLESVPEMGYDALASTPRGEICIKGSTLFSGYYKREDLTNEV MVDEWFHT" mobile_element 32973718..32974466 /note="source:CACAO_PIF_E144_scaffold_10 1203 1913" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(32974840..32974894) /note="source:scaffold_4_CACTA_0505 10913 11119" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32974895..32975072) /note="source:CACAO_Mariner_E220_scaffold_9 15073 15249" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(32976257..32981011) /locus_tag="TCM_016460" /note="dbxref CacaoGD:Thecc1EG016460" mRNA complement(join(32976257..32976978,32977098..32977152, 32977490..32977597,32977697..32977828,32977939..32978014, 32978560..32978618,32978803..32978850,32979493..32979583, 32980173..32981011)) /locus_tag="TCM_016460" /product="Inner membrane protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g31320.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10600.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11288t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11288t3" mRNA complement(join(32976257..32976978,32977079..32977152, 32977490..32977597,32977697..32977828,32977939..32978014, 32978560..32978618,32978803..32978850,32979493..32979583, 32980173..32981011)) /locus_tag="TCM_016460" /product="Inner membrane protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g31320.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10600.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b015903t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11288t3" CDS complement(join(32976707..32976978,32977098..32977152, 32977490..32977597,32977697..32977828,32977939..32978014, 32978560..32978618,32978803..32978850,32979493..32979583, 32980173..32980633)) /locus_tag="TCM_016460" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Inner membrane protein isoform 1" /protein_id="EOY25017.1" /db_xref="Phytozome:POPTR_0001s10600.1" /db_xref="TAIR:AT5G62050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL61" /translation="MAFSRSLSNRATLIARRYRPSFAYVLHEDDRKNQSLNESQSQEK PGNFVQHRYFGTGFSNSSSGFGVLFQDRICSQLSLHPSSGMSFCRYMSTTIGGGADMS AAASAINGGGADMSAAASAVNEVAIAAADSWFLVAALQHVIDTVHSFTGFPWWASIVV TTLLIRGATIPLLINQLKATSKFTLLRPRLEEIKEQMQSKGMDPLTVAEGQKEMKKLF NEYGVTPFSPMKGLFIQGPIFISFFLAISNMAEKVPSFKCGGAYWFMDLTTPDDLYIL PVLTALSFLITVECNMQEGMEGNPAAGTIKNVSRVLAALTVPFTMSFPKAIFCYWITS NLFSLTYGLVLKAPGVKKALGVPEIPKPPPGAAQKPSVDLFAALKQAVKQGRPATQES TSLPVEPAKVSNQITSSSSAISQRLKSLERQVKGRKKNKKR" CDS complement(join(32976936..32976978,32977079..32977152, 32977490..32977597,32977697..32977828,32977939..32978014, 32978560..32978618,32978803..32978850,32979493..32979583, 32980173..32980633)) /locus_tag="TCM_016460" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Inner membrane protein isoform 2" /protein_id="EOY25018.1" /db_xref="Phytozome:POPTR_0001s10600.1" /db_xref="TAIR:AT5G62050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL61" /translation="MAFSRSLSNRATLIARRYRPSFAYVLHEDDRKNQSLNESQSQEK PGNFVQHRYFGTGFSNSSSGFGVLFQDRICSQLSLHPSSGMSFCRYMSTTIGGGADMS AAASAINGGGADMSAAASAVNEVAIAAADSWFLVAALQHVIDTVHSFTGFPWWASIVV TTLLIRGATIPLLINQLKATSKFTLLRPRLEEIKEQMQSKGMDPLTVAEGQKEMKKLF NEYGVTPFSPMKGLFIQGPIFISFFLAISNMAEKVPSFKCGGAYWFMDLTTPDDLYIL PVLTALSFLITVECNMQEGMEGNPAAGTIKNVSRVLAALTVPFTMSFPKAIFCYWITS NLFSLTYGLGESINSRAQGSGGEEGFRCS" mobile_element complement(32981524..32981616) /note="source:CACAO_Helitron_E81_scaffold_3 3017 3108" /mobile_element_type="transposon:Helitron" gene complement(32982119..32984294) /locus_tag="TCM_016461" /note="dbxref CacaoGD:Thecc1EG016461" mRNA complement(join(32982119..32982419,32982555..32982970, 32983319..32984294)) /locus_tag="TCM_016461" /product="RING/U-box superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g02670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016466t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13970.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09551t00001" CDS complement(join(32982330..32982419,32982555..32982970, 32983319..32983991)) /locus_tag="TCM_016461" /note="paralog of Thecc1EG016466t1" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY25019.1" /db_xref="Phytozome:POPTR_0003s13970.1" /db_xref="TAIR:AT5G53110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXI1" /translation="MALLEIVFIFSSFLLLFLQPSTSVEICGASCGIELIRFPFRLNN QPDRCGYPRFNLSCKNEDQTVLTLPFSGDFTVVYIDYTYQNIWINDPDHCAPKRLLDG LNLSGTPFDLLYPRSYTFFNCSSAASTDVPEARLISCLSGGNFSVVAIPVDLLDSSTS LSTSCLEIATVLVPLSWTGWSEPGYGIRLTWNEPDCLLCERRSGICMFKRDTGLDVGC FGGISNGLPKSAKYGIIFGVGIPLLFVLGLVIYLRRKVDEHSHHQQPNPETFSNSVSP GLDSVAKGLDGPTIEAYPITLLGESRRLPRINDNTCPICLSEYQAKETLRTIPDCKHY FHAICIDEWLKLNATCPLCRNTPESSALTVHALHRLCFLIHELGIGSTEPTRKTLKSP " gene complement(32984619..32985387) /locus_tag="TCM_016462" /note="dbxref CacaoGD:Thecc1EG016462" mRNA complement(32984619..32985387) /locus_tag="TCM_016462" /product="RING/U-box superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016461t1" /inference="similar to AA sequence:Phytozome:Glyma05g36870.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(32984874..32985161) /locus_tag="TCM_016462" /note="paralog of Thecc1EG016461t1" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY25020.1" /db_xref="Phytozome:Glyma05g36870.1" /db_xref="TAIR:AT5G53110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXI1" /translation="MAAAVRRIEAYPITLLRESCRLSRPNDDTCTICLSDYKAKEIIR TIPDCDHYFHADCIDKWLRLNASCPVCRNTPDQETALINHSTLSPSSSPPP" gene complement(32985846..32987417) /locus_tag="TCM_016463" /note="dbxref CacaoGD:Thecc1EG016463" mRNA complement(join(32985846..32986441,32986715..32987417)) /locus_tag="TCM_016463" /product="RING/U-box superfamily protein" /inference="similar to AA sequence:ricco:30190.m010835" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS complement(join(32986113..32986441,32986715..32987381)) /locus_tag="TCM_016463" /note="dbxref ricco:30190.m010835" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY25021.1" /db_xref="TAIR:AT5G53110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KJ04" /translation="MVFKLFFFFFFLQLSISSESCITDCGNQEIHFPFQLTNQPDKER CGYRGFGLSCKNQSQTIITFPSSGDFSVEMIDYYQQNIRISDPAGCLPKRLLEGFDPS GPPFEQIYRMNFTLFNCSDDAPALQLELRPIPCLSGENNSVVAVPVDRLDLFASLSST CPNRTTVSLSVWESFKLWEKLGDRIILTWKEPDCKLCLKYQGTCQFKKHAGQEVGCSV VIDQGSSRIAKYFMFLSMISVFCILVLVICIPSMIMRCIRSRRLANTEINDSTILQST AVKRGLDKRAIEMYPTTLLGESPQLPKPNDNTCSIKPRTLLRVYQVACIIFMLTA" mobile_element 32987550..32987671 /note="source:scaffold_8_CACTA_0863 5131 5242" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32987655..32987724) /note="source:scaffold_3_CACTA_0396 889 948" /mobile_element_type="transposon:TIR/CACTA" gene complement(32988416..32990533) /locus_tag="TCM_016464" /note="dbxref CacaoGD:Thecc1EG016464" mRNA complement(join(32988416..32988971,32989270..32990533)) /locus_tag="TCM_016464" /product="RING/U-box superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016461t1" /inference="similar to AA sequence:ricco:30190.m010835" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3978t1" CDS complement(join(32988589..32988971,32989270..32989945)) /locus_tag="TCM_016464" /note="dbxref ricco:30190.m010835; paralog of Thecc1EG016461t1" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY25022.1" /db_xref="TAIR:AT5G53110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXI1" /translation="MAPFKLFFSLIFFFFLQPSRSDDERCQTGCGPVPIRSPFQIITI LPENRCGYPGLTVQCKNETQKILTFPFSGEFRVKSIDYLSQLVLISDPSDCTAERLLQ GFNYSHTPFQPLPSRNFKFFNCTPDSPIFRTGATPISCLSGESYSVVALPTDISYVSN MSGCMERATFLYPSREPDASSDSLGDFITLTWKEPDCQLCESMGGICQFTNNVGLDVG CFKPLYPGFPESAKYAALFVVASGVNIFGLIIYVRRKIKHHGEVPNADMSNPDTPQRT VVAKGLDMPTIEMYPTTLLDESLQLPKSTDNVCPMCLLEYQAKETLRTIPSCLHYFHA NCIDEWLQRNATCPLCRS" mobile_element 32990426..32990446 /note="source:scaffold_4_CACTA_0482 4477 4504" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32990447..32990702 /note="source:CACAO_on_E545_scaffold_5 1 257" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 32990703..32991706 /note="source:scaffold_4_CACTA_0482 4505 5901" /mobile_element_type="transposon:TIR/CACTA" gene complement(32991885..32992965) /locus_tag="TCM_016465" /note="dbxref CacaoGD:Thecc1EG016465" mRNA complement(join(32991885..32992258,32992548..32992723, 32992825..32992965)) /locus_tag="TCM_016465" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(32992104..32992258,32992548..32992723, 32992825..32992913)) /locus_tag="TCM_016465" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25023.1" /translation="MAAFKLLFFFSCLFFLQPSTSHQRWLVADRFPFSGKFKVEILDY MWQYIWISDPSDCIAERGLQGFDLSGTPLELLYLQSFTILNYSSGLPSNAERGTAMLV AAAGNSICFCIIGRIIKRVTAIIVRIPTLKSLTHQQP" mobile_element 32993594..32995182 /note="source:CACAO_Again_on_S_E128_scaffold_3 1 1589" /mobile_element_type="transposon:TIR/hAT" gene complement(32995127..32997665) /locus_tag="TCM_016466" /note="dbxref CacaoGD:Thecc1EG016466" mRNA complement(join(32995127..32996001,32996853..32997665)) /locus_tag="TCM_016466" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s13970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016461t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s13970.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11275t1" CDS complement(join(32995523..32996001,32996853..32997528)) /locus_tag="TCM_016466" /note="paralog of Thecc1EG016461t1" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY25024.1" /db_xref="Phytozome:POPTR_0003s13970.1" /db_xref="TAIR:AT5G53110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXI1" /translation="MPHLTFLWLLCFSLFLQKPTSAQTCPSSCPGGESGVKFPFGLNP DGNRNGRCSYPGFGLSCSNKTGALVLKLPKSGEFTVRFINYETQQIWINDPDFCLPKR FMESFDISGTPFVSEVWHTLTFFNCSTGAVAEAGLRRIRCLSNDNYSVVPYEIESFMD SDSGLPSTCHSIKTVTVPFAWYGWAEGVRLEWYKPDCRSCVERRGDCGFKNRASQEIG CFNLPSQAGLPRSAKYGITIGVGIPGLLCLIGLVSFVGSRVRAYARQRNLPSTEFSTS ISPLPAAIITGLDGPTIESYPKTKLGDSGRLPKPNDNTCPICLSEYQPKETLRTIPEC NHYFHANCIDAWLKMNASCPLCRNSPGGSAPITPSISSSSSSSSSSLLSA" mobile_element 32997842..32998156 /note="source:scaffold_1_CACTA_0008 14046 14408" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32998718..32999124) /note="source:scaffold_7_CACTA_0795 2851 3301" /mobile_element_type="transposon:TIR/CACTA" gene 33000823..33005628 /locus_tag="TCM_016467" /note="dbxref CacaoGD:Thecc1EG016467" mRNA join(33000823..33000934,33001028..33001102, 33001254..33001384,33001923..33002081,33002864..33003124, 33003574..33004221,33004399..33004484,33004667..33005628) /locus_tag="TCM_016467" /product="PHD finger protein-related isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010836" /inference="similar to AA sequence:Phytozome:POPTR_0003s13980.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc290t7" CDS join(33001304..33001384,33001923..33002081, 33002864..33003124,33003574..33004221,33004399..33004484, 33004667..33004778) /locus_tag="TCM_016467" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="PHD finger protein-related isoform 1" /protein_id="EOY25025.1" /db_xref="Phytozome:POPTR_0003s13980.1" /db_xref="TAIR:AT4G23860.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL59" /translation="MSAEFDDDGEQTMSINEYLESIEEEELEADLVLGGDEGDECTYS KGYMKRQAIFSCLTCTPNGNAGICTACCLSCHDGHEVLELWTKRNFRCDCGNSKFGEF SCKLFPNKDVENIENSYNHNFKGLYCTCNRPYPDPDLQEQVEMIQCCMCEDWFHEEHI SLNSPNEIPRDEEGEPLYEDFICKACSAVCSFLTLYPKTIRAAGGQPVAPVTTSKDKS VVEDIPPKDGGAGKLENNVCSDSSIKDNLVADANCESVSDGKKFVLGESSQNDDSSIA SSHATCILGADSVVSESKPLFLSKNWRDTLCRCDKCLDMHKQKHISYLLDKEDSIAEY EKTAKQKREEKLQQREGAAVNFFNNLGHVEKMEILNGIADFTDEFRSFLGSVDPSKAI TAADVNQIFENLKNKRRRVYAMSASTRMVRTCRHISIVSIPISCRKELLSFLVNER" mRNA join(33002646..33002775,33002838..33003124, 33003574..33004221,33004399..33005628) /locus_tag="TCM_016467" /product="PHD finger protein-related isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m010836" /inference="similar to AA sequence:Phytozome:POPTR_0003s13980.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:PASA:2:TSA:puevd3b015910t1a3; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc290t7" CDS join(33002721..33002775,33002838..33003124, 33003574..33004221,33004399..33004485) /locus_tag="TCM_016467" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="PHD finger protein-related isoform 2" /protein_id="EOY25026.1" /db_xref="Phytozome:POPTR_0003s13980.1" /db_xref="TAIR:AT4G23860.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL59" /translation="MLCWKFYICPTTQECVYFSFHFCNICKVLELWTKRNFRCDCGNS KFGEFSCKLFPNKDVENIENSYNHNFKGLYCTCNRPYPDPDLQEQVEMIQCCMCEDWF HEEHISLNSPNEIPRDEEGEPLYEDFICKACSAVCSFLTLYPKTIRAAGGQPVAPVTT SKDKSVVEDIPPKDGGAGKLENNVCSDSSIKDNLVADANCESVSDGKKFVLGESSQND DSSIASSHATCILGADSVVSESKPLFLSKNWRDTLCRCDKCLDMHKQKHISYLLDKED SIAEYEKTAKQKREEKLQQREGAAVNFFNNLGHVEKMEILNGIADFTDEFRSFLGSVD PSKAITAADVNQIFENLKNKRRRV" gene 33008977..33009748 /locus_tag="TCM_016468" /note="dbxref CacaoGD:Thecc1EG016468" mRNA 33008977..33009748 /locus_tag="TCM_016468" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10630.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc352t4" CDS 33009213..33009545 /locus_tag="TCM_016468" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25027.1" /translation="MGNCLKTSRSRQLVEEEEIEEQLGEIREATGFQKGNDGIGKGSI KVKIVLTKEELELFLLKLKNNNGGKSFEDLLAEMEKARSGKADSWRPSLESIMEVDDP EELEMDRS" gene complement(33012192..33013065) /locus_tag="TCM_016469" /note="dbxref CacaoGD:Thecc1EG016469" mRNA complement(33012192..33013065) /locus_tag="TCM_016469" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010839" /inference="similar to AA sequence:ricco:30190.m010839" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11292t1" CDS complement(33012545..33013045) /locus_tag="TCM_016469" /note="dbxref ricco:30190.m010839" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25028.1" /translation="MITTKSVTKQNPSFFSSPKKETMFTFFPSWLQRVLSGEIFELVE PNSASSFIYRDGLSKKQSPSKLKTCYGDSFSSSKPLLKVKDDKDMKKKSSGATGFDAK ATIRVKVRMTKQEAARLLSKCKDGGVLEFRDVARELVALPKDRVIVAFPCPGSNAALD SIPEEY" gene complement(33013381..33020215) /locus_tag="TCM_016470" /note="dbxref CacaoGD:Thecc1EG016470" mRNA complement(join(33013381..33013409,33017063..33018149)) /locus_tag="TCM_016470" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g08150.1" /inference="similar to AA sequence:ricco:30190.m010841" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1022t6; alternateUTRof:Thecc1EG016470t1; inference alignment:Newbler:10:TSA:cgbaB_g00160t00003" mRNA complement(join(33013697..33013878,33017063..33017937, 33020130..33020215)) /locus_tag="TCM_016470" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g08150.1" /inference="similar to AA sequence:ricco:30190.m010841" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00160t00003" gene 33015510..33016899 /locus_tag="TCM_016471" /note="dbxref CacaoGD:Thecc1EG016471" mRNA join(33015510..33015665,33015933..33016084, 33016706..33016899) /locus_tag="TCM_016471" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010840" /inference="similar to AA sequence:Phytozome:Glyma01g43490.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10231t1" CDS join(33015596..33015665,33015933..33016084, 33016706..33016723) /locus_tag="TCM_016471" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25031.1" /db_xref="Phytozome:Glyma01g43490.1" /translation="MGAAQAMRRIPRIKFPQRHPNPSGSGLQPQARTKPGDGDLTFFS SSKAPTTVGGKASLQPKRTPVSNEEIEAILLGGCF" CDS complement(33017099..33017794) /locus_tag="TCM_016470" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m010841" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25029.1" /db_xref="TAIR:AT4G23890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T0A4" /translation="MASSITLPSLQGSLLRSRFLGQNPISHRPHKSAFPVVKQPKTFC AKFDLFEILGGRGLCNGEKGLEVELKRNVLEASSPATKDEQRSGSTAISVPEDAFEKE LMGLTGGFPGGEKGLKKFVEENPPPAKQSVSDSVSIARLAATKKPKPPELPLLMPGMI AIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPK SAVLEAMLEKDQK" CDS complement(33017099..33017794) /locus_tag="TCM_016470" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m010841" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25030.1" /db_xref="TAIR:AT4G23890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9T0A4" /translation="MASSITLPSLQGSLLRSRFLGQNPISHRPHKSAFPVVKQPKTFC AKFDLFEILGGRGLCNGEKGLEVELKRNVLEASSPATKDEQRSGSTAISVPEDAFEKE LMGLTGGFPGGEKGLKKFVEENPPPAKQSVSDSVSIARLAATKKPKPPELPLLMPGMI AIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPK SAVLEAMLEKDQK" mobile_element complement(33019142..33020297) /note="source:INTACT135F_F90_scaffold_2-int 12854 14003" /mobile_element_type="retrotransposon:LTR/Copia" gene 33020311..33024276 /locus_tag="TCM_016472" /note="dbxref CacaoGD:Thecc1EG016472" mRNA join(33020311..33020648,33020819..33020946, 33021536..33021693,33021780..33021888,33021983..33022065, 33022460..33022523,33022633..33022750,33023150..33023304, 33023970..33024276) /locus_tag="TCM_016472" /product="Pleckstrin (PH) domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010842" /inference="similar to AA sequence:ricco:30190.m010842" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc448t9" mRNA join(33020516..33020648,33021536..33021693, 33021775..33021888,33021983..33022065,33022460..33022523, 33022633..33022750,33023150..33023304,33023970..33024049, 33024154..>33024176) /locus_tag="TCM_016472" /product="Pleckstrin (PH) domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30190.m010842" /inference="similar to AA sequence:ricco:30190.m010842" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00414t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc448t9" mRNA join(33020516..33020648,33021536..33021693, 33021846..33021888,33021983..33022065,33022460..33022523, 33022633..33022750,33023150..33023304,33023970..33024049, 33024154..>33024176) /locus_tag="TCM_016472" /product="Pleckstrin domain-containing protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:30190.m010842" /inference="similar to AA sequence:ricco:30190.m010842" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00414t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc448t9" mRNA join(33020532..33020648,33021536..33021693, 33021780..33021888,33021983..33022065,33022460..33022523, 33022633..33022750,33023150..33023304,33023970..33024049, 33024154..>33024172) /locus_tag="TCM_016472" /product="Pleckstrin domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m010842" /inference="similar to AA sequence:ricco:30190.m010842" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00453t00003; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc448t9" mRNA join(33020814..33020946,33021536..33021693, 33021780..33021888,33021983..33022065,33022460..33022523, 33022633..33022750,33023150..33023304,33023970..33024049, 33024154..>33024172) /locus_tag="TCM_016472" /product="Pleckstrin domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m010842" /inference="similar to AA sequence:ricco:30190.m010842" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00453t00004; alternateUTRof:Thecc1EG016472t2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc448t9" mRNA join(33020814..33020946,33021536..33021693, 33021846..33021888,33021983..33022065,33022460..33022523, 33022633..33022750,33023150..33023304,33023970..33024049, 33024154..>33024172) /locus_tag="TCM_016472" /product="Pleckstrin domain-containing protein isoform 6" /inference="alignment:exonerate- protein:2:ricco:30190.m010842" /inference="similar to AA sequence:ricco:30190.m010842" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00453t00008; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc448t9" CDS join(33021569..33021693,33021846..33021888, 33021983..33022065,33022460..33022523,33022633..33022750, 33023150..33023304,33023970..33024049,33024154..>33024175) /locus_tag="TCM_016472" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30190.m010842" /codon_start=1 /product="Pleckstrin domain-containing protein isoform 5" /protein_id="EOY25036.1" /db_xref="TAIR:AT4G23895.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JPD9" /translation="MDDSLGKIKVIPDHFQVSTPSADSLQIRSSPVSQPSIDNSSSLR GLPWSSGAGQEKVQLTAAELESLRSELADIEEREAHLKARLEHIDEILRSARLTGYLY IRTRWTALPGEPAPIDDNDVDDWLPRFVVLHGQCIFFYLFSTDLSPQDSTLLSDIVEV GSLPSFTREDEGTQYSFYILTRQGLRYECSHVSKIQVDTWLSALQTDCKLGSDLKVPN GSSENIRKLLDI" CDS join(33021569..33021693,33021780..33021888, 33021983..33022065,33022460..33022523,33022633..33022750, 33023150..33023304,33023970..33024049,33024154..>33024172) /locus_tag="TCM_016472" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m010842" /codon_start=1 /product="Pleckstrin domain-containing protein isoform 2" /protein_id="EOY25033.1" /db_xref="TAIR:AT4G23895.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JPD9" /translation="MDDSLGKIKVIPDHFQVSTPSADSLQIRSSPVSQPSIDNSSRSC SSLWSGRKLRSAALMLNLFSLRGLPWSSGAGQEKVQLTAAELESLRSELADIEEREAH LKARLEHIDEILRSARLTGYLYIRTRWTALPGEPAPIDDNDVDDWLPRFVVLHGQCIF FYLFSTDLSPQDSTLLSDIVEVGSLPSFTREDEGTQYSFYILTRQGLRYECSHVSKIQ VDTWLSALQTDCKLGSDLKVPNGSSENIRKLLD" CDS join(33021569..33021693,33021780..33021888, 33021983..33022065,33022460..33022523,33022633..33022750, 33023150..33023304,33023970..33024049,33024154..>33024172) /locus_tag="TCM_016472" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30190.m010842" /codon_start=1 /product="Pleckstrin domain-containing protein isoform 2" /protein_id="EOY25035.1" /db_xref="TAIR:AT4G23895.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JPD9" /translation="MDDSLGKIKVIPDHFQVSTPSADSLQIRSSPVSQPSIDNSSRSC SSLWSGRKLRSAALMLNLFSLRGLPWSSGAGQEKVQLTAAELESLRSELADIEEREAH LKARLEHIDEILRSARLTGYLYIRTRWTALPGEPAPIDDNDVDDWLPRFVVLHGQCIF FYLFSTDLSPQDSTLLSDIVEVGSLPSFTREDEGTQYSFYILTRQGLRYECSHVSKIQ VDTWLSALQTDCKLGSDLKVPNGSSENIRKLLD" CDS join(33021569..33021693,33021846..33021888, 33021983..33022065,33022460..33022523,33022633..33022750, 33023150..33023304,33023970..33024049,33024154..>33024172) /locus_tag="TCM_016472" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30190.m010842" /codon_start=1 /product="Pleckstrin domain-containing protein isoform 6" /protein_id="EOY25037.1" /db_xref="TAIR:AT4G23895.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JPD9" /translation="MDDSLGKIKVIPDHFQVSTPSADSLQIRSSPVSQPSIDNSSSLR GLPWSSGAGQEKVQLTAAELESLRSELADIEEREAHLKARLEHIDEILRSARLTGYLY IRTRWTALPGEPAPIDDNDVDDWLPRFVVLHGQCIFFYLFSTDLSPQDSTLLSDIVEV GSLPSFTREDEGTQYSFYILTRQGLRYECSHVSKIQVDTWLSALQTDCKLGSDLKVPN GSSENIRKLLD" CDS join(33021569..33021693,33021780..33021888, 33021983..33022065,33022460..33022523,33022633..33022750, 33023150..33023304,33023970..33024053) /locus_tag="TCM_016472" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m010842" /codon_start=1 /product="Pleckstrin (PH) domain-containing protein isoform 1" /protein_id="EOY25032.1" /db_xref="TAIR:AT4G23895.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JPD9" /translation="MDDSLGKIKVIPDHFQVSTPSADSLQIRSSPVSQPSIDNSSRSC SSLWSGRKLRSAALMLNLFSLRGLPWSSGAGQEKVQLTAAELESLRSELADIEEREAH LKARLEHIDEILRSARLTGYLYIRTRWTALPGEPAPIDDNDVDDWLPRFVVLHGQCIF FYLFSTDLSPQDSTLLSDIVEVGSLPSFTREDEGTQYSFYILTRQGLRYECSHVSKIQ VDTWLSALQTDCKLGSDLKVPNGSSEK" CDS join(33021829..33021888,33021983..33022065, 33022460..33022523,33022633..33022750,33023150..33023304, 33023970..33024049,33024154..>33024175) /locus_tag="TCM_016472" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m010842" /codon_start=1 /product="Pleckstrin (PH) domain-containing protein isoform 3" /protein_id="EOY25034.1" /db_xref="TAIR:AT4G23895.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JPD9" /translation="MLNLFSLRGLPWSSGAGQEKVQLTAAELESLRSELADIEEREAH LKARLEHIDEILRSARLTGYLYIRTRWTALPGEPAPIDDNDVDDWLPRFVVLHGQCIF FYLFSTDLSPQDSTLLSDIVEVGSLPSFTREDEGTQYSFYILTRQGLRYECSHVSKIQ VDTWLSALQTDCKLGSDLKVPNGSSENIRKLLDI" gene 33025683..33029493 /locus_tag="TCM_016473" /note="dbxref CacaoGD:Thecc1EG016473" mRNA join(33025683..33025946,33027047..33027184, 33028005..33028042,33028165..33028215,33028466..33028633, 33028708..33028820,33028912..33029493) /locus_tag="TCM_016473" /product="Nucleoside diphosphate kinase family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010843" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014573t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10670.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07545t00001" CDS join(33025865..33025946,33027047..33027184, 33028005..33028042,33028165..33028215,33028466..33028633, 33028708..33028820,33028912..33029035) /locus_tag="TCM_016473" /note="paralog of Thecc1EG014573t1" /codon_start=1 /product="Nucleoside diphosphate kinase family protein" /protein_id="EOY25038.1" /db_xref="Phytozome:POPTR_0001s10670.1" /db_xref="TAIR:AT4G23900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49203" /translation="MSSQILRSASRAARSLLSASKSSRFYSEGRAVAAAAAVSLGGKV PLLASAYGRTGPTNASRGWLSGVFALPVAAYMLQEQEAHAAEMERTFIAIKPDGVQRG LISEIISRFERKGFKLVAIKILVPSKEFAQQHYDDLKERPFFSGLCEFLSSGPVVAMV WEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKNEINLWFK PQELVSYTSNAEKWIYGVN" gene <33029818..33033696 /locus_tag="TCM_016474" /note="dbxref CacaoGD:Thecc1EG016474" mRNA join(<33029818..33029991,33030542..33030608, 33030696..33030754,33030840..33030929,33031032..33031171, 33031288..33031290,33032696..33032750,33033012..33033696) /locus_tag="TCM_016474" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g43480.1" /inference="similar to AA sequence:Phytozome:Glyma11g02020.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11567t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11567t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10273t1" mRNA join(33029818..33030073,33030542..33030608, 33030696..33030754,33030840..33030929,33031032..33031171, 33032663..33032750,33033012..33033523) /locus_tag="TCM_016474" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g43480.1" /inference="similar to AA sequence:Phytozome:Glyma11g02020.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11567t4" CDS join(<33029818..33029991,33030542..33030608, 33030696..33030754,33030840..33030929,33031032..33031171, 33031288..33031290,33032696..33032750,33033012..33033218) /locus_tag="TCM_016474" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY25040.1" /db_xref="Phytozome:Glyma11g02020.1" /db_xref="TAIR:AT4G10970.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXJ1" /translation="VYSFCCWRNHEASKPLQFFSPLLPFSKKVTSKTLTLAPASPKSW IRFAFLVEFLVSKSMAAKPLTSEAIALTEKKMDMTLDDIIKMSKNSTKAKKQQRAPIK SQKPVNNAAKEKALKVQQYMDSRSSLRQGVLAQRRSNFQGNRFPLAAEAARRAAIAPI RVRAFNGSRVANMNKPSRIGAPPVQRRAVNGGFAAKPHQQQQQQQQQQEQQGNVATKQ RPQTLDSLFANMKEQRMRVLSRQHNTAQRNGGGRQRMPWGRGRFGN" mRNA join(33029931..33029991,33030542..33030608, 33030696..33030754,33030840..33030929,33031032..33031171, 33032696..33032750,33033012..33033560) /locus_tag="TCM_016474" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g43480.1" /inference="similar to AA sequence:Phytozome:Glyma11g02020.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00744t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11567t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10273t1" CDS join(33030542..33030608,33030696..33030754, 33030840..33030929,33031032..33031171,33032663..33032750, 33033012..33033218) /locus_tag="TCM_016474" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25039.1" /db_xref="Phytozome:Glyma11g02020.1" /db_xref="TAIR:AT4G10970.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXJ1" /translation="MAAKPLTSEAIALTEKKMDMTLDDIIKMSKNSTKAKKQQRAPIK SQKPVNNAAKEKALKVQQYMDSRSSLRQGVLAQRRSNFQGNRFPLAAEAARRAAIAPI RVRAFNGSRVANMNKPSYAFMVFTSGCRIGAPPVQRRAVNGGFAAKPHQQQQQQQQQQ EQQGNVATKQRPQTLDSLFANMKEQRMRVLSRQHNTAQRNGGGRQRMPWGRGRFGN" CDS join(33030542..33030608,33030696..33030754, 33030840..33030929,33031032..33031171,33032696..33032750, 33033012..33033218) /locus_tag="TCM_016474" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY25041.1" /db_xref="Phytozome:Glyma11g02020.1" /db_xref="TAIR:AT4G10970.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXJ1" /translation="MAAKPLTSEAIALTEKKMDMTLDDIIKMSKNSTKAKKQQRAPIK SQKPVNNAAKEKALKVQQYMDSRSSLRQGVLAQRRSNFQGNRFPLAAEAARRAAIAPI RVRAFNGSRVANMNKPRIGAPPVQRRAVNGGFAAKPHQQQQQQQQQQEQQGNVATKQR PQTLDSLFANMKEQRMRVLSRQHNTAQRNGGGRQRMPWGRGRFGN" gene 33034017..33040187 /locus_tag="TCM_016476" /note="dbxref CacaoGD:Thecc1EG016476" mRNA join(33034017..33034752,33034840..33035003, 33035117..33035194,33035652..33035731,33036196..33036302, 33036616..33037058,33037382..33037489,33038190..33038257, 33038431..33038518,33038613..33038684,33038763..33039123, 33039296..33039820,33039896..33040187) /locus_tag="TCM_016476" /product="Pentatricopeptide repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010845" /inference="similar to AA sequence:Phytozome:GSVIVT01019542001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00310t00004" mRNA join(33034253..33034752,33034840..33035003, 33035117..33035194,33035652..33035731,33036218..33036302, 33036639..33037058,33037382..33037489,33038190..33038257, 33038431..33038518,33038613..33038684,33038763..33038816, 33039296..33039822) /locus_tag="TCM_016476" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m010845" /inference="similar to AA sequence:Phytozome:GSVIVT01019542001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00310t00004; inference alignment:Newbler:10:TSA:cgbaL_g00310t00004" CDS join(33034293..33034752,33034840..33035003, 33035117..33035194,33035652..33035731,33036218..33036302, 33036639..33037058,33037382..33037489,33038190..33038257, 33038431..33038518,33038613..33038684,33038763..33038816, 33039296..33039376) /locus_tag="TCM_016476" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /protein_id="EOY25043.1" /db_xref="Phytozome:GSVIVT01019542001" /db_xref="TAIR:AT1G64430.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYZ8" /translation="MTLNIASSPWLSRFSPPIFTKLPEYSPNNSNSTSTSNATLLFLL LRTNSLSSLKTNKPFKPRASLKNTQSNGVLEGEETSVLNEELLSRVSATKDADEALEM IDQSQSESSEQRYGGVVSGSDCRLIISAALDRNNADLALSVFYAMRSSFDTGVSENGP LVDRWKWSRPNVGIYTTLVQGLAVSLRVSDALRMIDDICRIGVSPGEEVPFGKVVRCP ICTIAVGVAQPQLGIQIVCCAKCRYKYELVSGNIVSVDSEEISMEIPAWKRGLKSLQI LKQSIPAAVHSIVVQTPSGVARTHRFATETVDLPAQEGERVTIACAAPSNVYREVGPF KFSPKDPNLYPGEPMCLTNHKDGRESQLLRAPAKDGNSSLLNPAFLIPILTVLAAGDA ASGIIDPSLPQLLSVAAVGSLAVGATLNAVIFPQLNMLPQRSVETTAIKQQLLSQYDV LQSRIRDLKEAAEKEVWMLARMCQLDNKIFAIGESSYRARRSRIKRVREGLENSLRGR IELIDSYARISSMIEIEVEMDSDVLAAEAASNAETIAEQIQQIMELENLEEKWKLQAE ANDEAEKLLSSQSIPTEQI" CDS join(33034293..33034752,33034840..33035003, 33035117..33035194,33035652..33035731,33036196..33036302, 33036616..33037058,33037382..33037489,33038190..33038257, 33038431..33038518,33038613..33038684,33038763..33039080) /locus_tag="TCM_016476" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein isoform 1" /protein_id="EOY25042.1" /db_xref="Phytozome:GSVIVT01019542001" /db_xref="TAIR:AT1G64430.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYZ8" /translation="MTLNIASSPWLSRFSPPIFTKLPEYSPNNSNSTSTSNATLLFLL LRTNSLSSLKTNKPFKPRASLKNTQSNGVLEGEETSVLNEELLSRVSATKDADEALEM IDQSQSESSEQRYGGVVSGSDCRLIISAALDRNNADLALSVFYAMRSSFDTGVSENGP LVDRWKWSRPNVGIYTTLVQGLAVSLRVSDALRMIDDICRIGVSPGEEVPFGKVVRCP ICTIAVGVAQPQLGIQIVCCAKCRYKYELVSGNIVSVDSEEIRNSSCRTQHGDSSMEK GAKISADTEAKHSCCCSLYCVLSSSSFQVQTPSGVARTHRFATETVDLPAQEGERVTI ACAAPSNVYREVGPFKFSPKDPNLYPGEPMCLTNHKDGRESQLLRAPAKDGNSSLLNP AFLIPILTVLAAGDAASGIIDPSLPQLLSVAAVGSLAVGATLNAVIFPQLNMLPQRSV ETTAIKQQLLSQYDVLQSRIRDLKEAAEKEVWMLARMCQLDNKIFAIGESSYRARRSR IKRVREGLENSLRGRIELIDSYARISSMIEIEVEMDSDVLAAEAASNAETIAEQIQQI MELENLEEAFSISQSNFLFTYSPPPLSRYKACGFRHSSVCFGISHNALIEIGYPKLMK ISNIKNLEVRELDKKTRFYLPRDHMRVLASIKTQFNS" gene 33040234..33046007 /locus_tag="TCM_016477" /note="dbxref CacaoGD:Thecc1EG016477" mRNA join(33040234..33040263,33041552..33041885, 33043074..33043123,33043208..33043343,33043661..33043762, 33043959..33044186,33044661..33044739,33045016..33045098, 33045201..33045292,33045432..33046007) /locus_tag="TCM_016477" /product="UDP-D-glucose/UDP-D-galactose 4-epimerase 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019545001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043427t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019545001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10250t1" CDS join(33041703..33041885,33043074..33043123, 33043208..33043343,33043661..33043762,33043959..33044186, 33044661..33044739,33045016..33045098,33045201..33045292, 33045432..33045525) /locus_tag="TCM_016477" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043427t1" /codon_start=1 /product="UDP-D-glucose/UDP-D-galactose 4-epimerase 5 isoform 1" /protein_id="EOY25044.1" /db_xref="Phytozome:GSVIVT01019545001" /db_xref="TAIR:AT4G10960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SN58" /translation="MSKNILVTGGAGYIGSHTVLQLLLGGYRVVVVDNLDNSSEVAIK RVEELAGEFGKNLSFLQMDLRDRPALEKLFAKTKFDAVIHFAGLKAVGESVQKPLLYY DNNLIGTITLLELMAAHGCKNLVFSSSATVYGWPKEVPCTEEFPLAAVNPYGRTKLFI EEMCRDIRSSDSEWKIILLRYFNPVGAHPSGHIGEDPRGIPNNLMPFVQQVAVGRRPA LTVFGNDYSTKDGTGVRDYIHVVDLADGHIAALRKLSDPNIGCEVYNLGTGKGTSVLE MVAAFEKASGKKIPLVMAGRRPGDAEIVYASTEKAERELNWTAKYGIEEMCRDQWNWA SKNPYGYESSESTN" mRNA join(33041742..33041885,33043074..33043123, 33043208..33043343,33043661..33043762,33043959..33044186, 33044661..33044739,33045016..33045098,33045201..33045276, 33045432..33045813) /locus_tag="TCM_016477" /product="UDP-D-glucose/UDP-D-galactose 4-epimerase 5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019545001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043427t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10700.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01129t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10250t1" CDS join(33043074..33043123,33043208..33043343, 33043661..33043762,33043959..33044186,33044661..33044739, 33045016..33045098,33045201..33045276,33045432..33045607) /locus_tag="TCM_016477" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043427t1" /codon_start=1 /product="UDP-D-glucose/UDP-D-galactose 4-epimerase 5 isoform 2" /protein_id="EOY25045.1" /db_xref="Phytozome:POPTR_0001s10700.1" /db_xref="TAIR:AT4G23920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SN58" /translation="MDLRDRPALEKLFAKTKFDAVIHFAGLKAVGESVQKPLLYYDNN LIGTITLLELMAAHGCKNLVFSSSATVYGWPKEVPCTEEFPLAAVNPYGRTKLFIEEM CRDIRSSDSEWKIILLRYFNPVGAHPSGHIGEDPRGIPNNLMPFVQQVAVGRRPALTV FGNDYSTKDGTGVRDYIHVVDLADGHIAALRKLSDPNIGCEVYNLGTGKGTSVLEMVA AFEKASGKKIPLVMAGRRPGDAEIVYASTEKAERQNTVLRRCAGISGTGPAKTHMDMN LLSQLTECQDFVTPRFLSKTLRLDFLNFNFTDL" gene 33046840..33051972 /locus_tag="TCM_016478" /note="dbxref CacaoGD:Thecc1EG016478" mRNA join(33046840..33047466,33047565..33047628, 33047724..33047831,33047924..33048025,33048143..33048193, 33048453..33048514,33048754..33048844,33049040..33049104, 33049210..33049404,33049552..33049671,33049811..33049881, 33049975..33050200,33050676..33050726,33050824..33051052, 33051184..33051196,33051279..33051321,33051414..33051972) /locus_tag="TCM_016478" /product="Dynamin-like protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010847" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005147t1" /inference="similar to AA sequence:ricco:30190.m010847" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13276t00001" mRNA join(33047158..33047466,33047565..33047628, 33047724..33047831,33047924..33048025,33048143..33048193, 33048453..33048514,33048754..33048844,33049040..33049104, 33049210..33049404,33049552..33049671,33049811..33049881, 33049975..33050200,33050676..33050726,33050824..33051052, 33051183..33051321,33051412..33051875) /locus_tag="TCM_016478" /product="Dynamin-like protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m010847" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005147t1" /inference="similar to AA sequence:ricco:30190.m010847" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11597t1; inference alignment:Newbler:10:TSA:cgbaL_g13276t00001" CDS join(33047338..33047466,33047565..33047628, 33047724..33047831,33047924..33048025,33048143..33048193, 33048453..33048514,33048754..33048844,33049040..33049104, 33049210..33049404,33049552..33049671,33049811..33049881, 33049975..33050200,33050676..33050726,33050824..33051052, 33051184..33051196,33051279..33051321,33051414..33051542) /locus_tag="TCM_016478" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m010847; paralog of Thecc1EG005147t1" /codon_start=1 /product="Dynamin-like protein isoform 1" /protein_id="EOY25046.1" /db_xref="TAIR:AT5G42080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNX5" /translation="MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQS SGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKSEEGSREYAEFLHLPRKRFTDFSA VRKEIQDETDRETGRTKQISSVPIHLSIYSPGVVNLTLIDLPGLTKVAVEGQPDSIVQ DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTLGVLTKIDLMDK GTDAVDILEGKSYRLKFPWVGVVNRSQADINKNVDMIAARRREREYFANTPEYKHLAH RMGSEHLAKVLSKHLETVIKSRIPGIQSLINKTIAELETELSRLGKPIAADAGGKLYT IMEICRLFDQNYREHLDGVRPGGDKVYNVFDNQLPAALKRLQFDKQLSMENIRKLITE ADGYQPHLIAPEQGYRRLIESTLITIRGPAEAAVDAVHSILKDLIHKAMSETPELKQY PALRVEVGNAAVESLDRMREQSKKATLQLVDMECSYLTVDFFRKLPQDVEKGGNPTQS IFDRYNDSYLRRIGTTVLSLLDFFYTELGKLEQKRLSALLNEDPAIMERRSALAKRLE LYRSAQAEIDTVAWSK" CDS join(33047338..33047466,33047565..33047628, 33047724..33047831,33047924..33048025,33048143..33048193, 33048453..33048514,33048754..33048844,33049040..33049104, 33049210..33049404,33049552..33049671,33049811..33049881, 33049975..33050200,33050676..33050726,33050824..33051052, 33051183..33051208) /locus_tag="TCM_016478" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m010847; paralog of Thecc1EG005147t1" /codon_start=1 /product="Dynamin-like protein isoform 2" /protein_id="EOY25047.1" /db_xref="TAIR:AT5G42080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNX5" /translation="MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQS SGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKSEEGSREYAEFLHLPRKRFTDFSA VRKEIQDETDRETGRTKQISSVPIHLSIYSPGVVNLTLIDLPGLTKVAVEGQPDSIVQ DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTLGVLTKIDLMDK GTDAVDILEGKSYRLKFPWVGVVNRSQADINKNVDMIAARRREREYFANTPEYKHLAH RMGSEHLAKVLSKHLETVIKSRIPGIQSLINKTIAELETELSRLGKPIAADAGGKLYT IMEICRLFDQNYREHLDGVRPGGDKVYNVFDNQLPAALKRLQFDKQLSMENIRKLITE ADGYQPHLIAPEQGYRRLIESTLITIRGPAEAAVDAVHSILKDLIHKAMSETPELKQY PALRVEVGNAAVESLDRMREQSKKATLQLVDMECSYLTVDFFRKLPQDVEKGGNPTQS IFDRYNDSYLRRIGDNRFVIC" gene 33052048..33056640 /locus_tag="TCM_016479" /note="dbxref CacaoGD:Thecc1EG016479" mRNA join(33052048..33052316,33053500..33053611, 33053770..33054982) /locus_tag="TCM_016479" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026301t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14100.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00307t00001_C1" mRNA join(33052597..33052788,33053500..33053611, 33053770..33055327) /locus_tag="TCM_016479" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026301t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14100.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc471t11; alternateUTRof:Thecc1EG016479t1; inference alignment:Newbler:10:TSA:cgbaP1_g00307t00001_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc202t9" mRNA join(33052616..33052645,33053500..33053611, 33053770..33055019,33056141..33056313,33056416..33056640) /locus_tag="TCM_016479" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026301t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14100.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc193t11_C2; alternateUTRof:Thecc1EG016479t1; inference alignment:Newbler:10:TSA:cgbaP1_g00307t00001_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc202t9" CDS join(33053550..33053611,33053770..33054748) /locus_tag="TCM_016479" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026301t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY25048.1" /db_xref="Phytozome:POPTR_0003s14100.1" /db_xref="TAIR:AT4G10955.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q680C0" /translation="MASEREDFGLSGPLHLNSIDWTNAHHRRSVAASLVEGVYILERD RQEKRQESQALAPPWWEFFHFKLIRQLVDDADFCIFGAIYEYKPPSSHCHDSIDRSPH YVIAFRGTITKPDSFSRDFELDIHIIRNGLHQTSRFEIAMQAVRNMVAAVGDSNVWLA GHSLGAAMAMLAGKTMAKTGIFLEAFLFNPPFLSAPIERIKDKKVKHGLRFAGSVITA GLALATKGNSLRSRSEDPFAALSAWTPCLFVNPADHLCSEYVGYFEHRKKMEEIGAGA IERLATQHSLGGLFMSVVGRGAEAAEPLHLLPSANLTVNLTPAQDFKQAHGIHQWWGP EVHLKCNLYKYK" CDS join(33053550..33053611,33053770..33054748) /locus_tag="TCM_016479" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026301t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY25049.1" /db_xref="Phytozome:POPTR_0003s14100.1" /db_xref="TAIR:AT4G10955.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q680C0" /translation="MASEREDFGLSGPLHLNSIDWTNAHHRRSVAASLVEGVYILERD RQEKRQESQALAPPWWEFFHFKLIRQLVDDADFCIFGAIYEYKPPSSHCHDSIDRSPH YVIAFRGTITKPDSFSRDFELDIHIIRNGLHQTSRFEIAMQAVRNMVAAVGDSNVWLA GHSLGAAMAMLAGKTMAKTGIFLEAFLFNPPFLSAPIERIKDKKVKHGLRFAGSVITA GLALATKGNSLRSRSEDPFAALSAWTPCLFVNPADHLCSEYVGYFEHRKKMEEIGAGA IERLATQHSLGGLFMSVVGRGAEAAEPLHLLPSANLTVNLTPAQDFKQAHGIHQWWGP EVHLKCNLYKYK" CDS join(33053550..33053611,33053770..33054748) /locus_tag="TCM_016479" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG026301t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY25050.1" /db_xref="Phytozome:POPTR_0003s14100.1" /db_xref="TAIR:AT4G10955.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q680C0" /translation="MASEREDFGLSGPLHLNSIDWTNAHHRRSVAASLVEGVYILERD RQEKRQESQALAPPWWEFFHFKLIRQLVDDADFCIFGAIYEYKPPSSHCHDSIDRSPH YVIAFRGTITKPDSFSRDFELDIHIIRNGLHQTSRFEIAMQAVRNMVAAVGDSNVWLA GHSLGAAMAMLAGKTMAKTGIFLEAFLFNPPFLSAPIERIKDKKVKHGLRFAGSVITA GLALATKGNSLRSRSEDPFAALSAWTPCLFVNPADHLCSEYVGYFEHRKKMEEIGAGA IERLATQHSLGGLFMSVVGRGAEAAEPLHLLPSANLTVNLTPAQDFKQAHGIHQWWGP EVHLKCNLYKYK" gene complement(33054989..33059843) /locus_tag="TCM_016480" /note="dbxref CacaoGD:Thecc1EG016480" mRNA complement(join(33054989..33055335,33056143..33056313, 33056416..33056525,33057107..33057226,33058788..33058898, 33059669..33059843)) /locus_tag="TCM_016480" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10244t1" CDS complement(join(33055267..33055335,33056143..33056313, 33056416..33056525,33057107..33057224)) /locus_tag="TCM_016480" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25051.1" /translation="MRDGGRRDANLWFDFQDMRNFIPRANSTPSSPRTCGSTLRDYQI KQGATMSKRRELNPDQRRAKNEGDRRRRRDHKMEFQRLQMAEAQLEPLRNENRHLREE IERLNAMLSNLMNTIHQLRDEIRQQRETEEMVDSWIQSPNEDGASNEPITRGH" mobile_element complement(33057564..33057703) /note="source:scaffold_8_CACTA_0858 14593 14734" /mobile_element_type="transposon:TIR/CACTA" gene 33058197..33059712 /locus_tag="TCM_016481" /note="dbxref CacaoGD:Thecc1EG016481" mRNA join(33058197..33058286,33059060..33059712) /locus_tag="TCM_016481" /product="Alpha/beta-Hydrolases superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016479t3" /inference="similar to AA sequence:Phytozome:POPTR_0003s14100.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS join(33058265..33058286,33059060..33059493) /locus_tag="TCM_016481" /note="paralog of Thecc1EG016479t3" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein, putative" /protein_id="EOY25052.1" /db_xref="Phytozome:POPTR_0003s14100.1" /db_xref="TAIR:AT4G10955.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q680C0" /translation="MPATNPLDEKVKHGLRFAGSVITAGPALAPKGNSLRSRSEDPFA ILSAWTPCLLVNPADHLCSEYVGYFEHRKKMEEIGAGAIERLANQHSLGLFMSVVGRG AEAAEPLHLFPSANLTVNLTPSQDFKQAHGIHQWWRPELHLKCNLYKYK" mobile_element 33062311..33062426 /note="source:scaffold_4_CACTA_0482 16926 17032" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33063160..33063195 /note="source:scaffold_4_CACTA_0482 17102 17340" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33063196..33063408 /note="source:CACAO_on_E445_scaffold_2 326 537" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 33063403..33063855 /note="source:CACAO_on_S_E390_scaffold_9 2385 2848" /mobile_element_type="transposon:TIR/Mutator" gene complement(33063922..33065128) /locus_tag="TCM_016483" /note="dbxref CacaoGD:Thecc1EG016483" mRNA complement(join(33063922..33064494,33064581..33064821, 33064947..33065128)) /locus_tag="TCM_016483" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage" CDS complement(join(33064436..33064494,33064581..33064821, 33064947..33065003)) /locus_tag="TCM_016483" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25053.1" /translation="MRLKPEIIFLGVWSNNEAKSQPCRVQRLGSSPVNLVVPDFGENR KRSGKRRNGSTGKEENWRGFLTLVGPKTAADTEIIIQCPLTSKLEFRAFLTVFSFGLE DSRVIAEEEGLKVELN" gene complement(33065221..33067373) /locus_tag="TCM_016484" /note="dbxref CacaoGD:Thecc1EG016484" mRNA complement(join(33065221..33065850,33066767..33066780, 33066964..33067373)) /locus_tag="TCM_016484" /product="Glycine-rich protein family" /inference="alignment:exonerate- protein:2:ricco:30190.m010849" /inference="similar to AA sequence:ricco:30190.m010849" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10249t1" CDS complement(join(33065339..33065850,33066767..33066780, 33066964..33067097)) /locus_tag="TCM_016484" /note="dbxref ricco:30190.m010849" /codon_start=1 /product="Glycine-rich protein family" /protein_id="EOY25054.1" /translation="MTPSIIILAKILEHPGSVGISIIASLAISPSSTRHCHETLFSLS GIEDANPKISVNAVQLPSFSIGNNSVSFTFSQYVTVKNPNRAAFSHYDSTIQLLYSGS QVGFMFIPAGKIEAGRTQYMAVTFAVQSFPFAAPNEASAATMTIPTPTTTTGPIGLVG GFGGSNNGYRVGPTMEIESRMEMAGRVRVLHFFTHHVDAKSGCRVTISVSDGSVLGFH C" gene complement(33066927..33071148) /locus_tag="TCM_016485" /note="dbxref CacaoGD:Thecc1EG016485" mRNA complement(join(33066927..33067181,33067912..33068629, 33069296..33070673,33070816..33071148)) /locus_tag="TCM_016485" /product="Phosphoinositide 4-kinase gamma 4, gamma 4,ubdk gamma 4,pi4k gamma 4" /inference="alignment:exonerate- protein:2:ricco:30190.m010850" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005144t1" /inference="similar to AA sequence:frave:gene32128" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11359t1" CDS complement(join(33068252..33068629,33069296..33070673, 33070816..33070829)) /locus_tag="TCM_016485" /note="dbxref frave:gene32128; paralog of Thecc1EG005144t1" /codon_start=1 /product="Phosphoinositide 4-kinase gamma 4, gamma 4,ubdk gamma 4,pi4k gamma 4" /protein_id="EOY25055.1" /db_xref="TAIR:AT2G46500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL47" /translation="MPQSLRAIFAEMSVADVALSPVRQEAIRSPGYCNNQPSESILVY LSVAGSVIPMRVLESDSIASVKLRIQTCKGFVVKKQKLVFGGRELARNDSLVKDYGVK GGNVLHLVLKLSDLLLITVRTTCGKEFELHVDRYRNVGYLKQRIARKGKGFVDVDEQE IFCNGERVDDQRLIDDLCKDNDAVIHLLVQKSAKVRAKPVEKDLELSVVAESDIDERR GSVGGEKNQSEGLQIVTKEPIVRDFWLKPVTVNPKVKLPSFMWDMIHSTFDGLEIGNQ PIRSSEGTGGTYFMQDKLGLHHVSIFKPIDEEPMAVNNPLGLPVSTNGEGLKKGTRVG EGAVREVAAYILDHPKSGPRSLSGEMMGFAGVPPTCMVQCLHKGFNHPKGYECAPEDV KVGSLQMFMKNSGSCEDMGPGGFPVEEVHKISVFDIRMANADRHAGNILIGKREGGQT MLIPIDHGYCLPENFEDCTFDWLYWPQSRQPYSPDTIDYIKSLDAEQDIALLKFYGWD VPVECARTLRISTMLLKKGVERALTPFAIGSIMCRQTVNKESVIEQIVREAQDSLLPG MSEAAFIETVSQVMDSWLDKLTN" mobile_element complement(33072835..33072989) /note="source:scaffold_3_CACTA_0377 6070 6225" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33072903..33073018 /note="source:CACAO_Mutator_E1430_scaffold_6 297 412" /mobile_element_type="transposon:TIR/Mutator" mobile_element 33073444..33073782 /note="source:CACAO_Mutator_E1430_scaffold_6 1097 1430" /mobile_element_type="transposon:TIR/Mutator" gene 33076133..33079079 /locus_tag="TCM_016486" /note="dbxref CacaoGD:Thecc1EG016486" mRNA join(33076133..33076931,33077438..33077565, 33077927..33078166,33078388..33078643,33078744..33079079) /locus_tag="TCM_016486" /product="SGNH hydrolase-type esterase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019553001" /inference="similar to AA sequence:ricco:30190.m010852" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc4989t1" CDS join(33076565..33076931,33077438..33077565, 33077927..33078166,33078388..33078643,33078744..33078976) /locus_tag="TCM_016486" /note="dbxref ricco:30190.m010852" /codon_start=1 /product="SGNH hydrolase-type esterase superfamily protein" /protein_id="EOY25056.1" /db_xref="TAIR:AT4G10950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JN67" /translation="MVTNILVAILFLISTILSHSKALRFPQELFNFSSNQISIVDNPS RPPSSSASPTPLLSPASPTVSSPLVPALFIIGDSTVDCGNNNFLGTFARADRPPYGRD FDTHQPTGRFSNGRIPVDYLALHLGLPFVPSYLGQAGELEDMLHGVNYASAAAGVIFS SGSELGQHISFTHQIQQFTDTYQQFVLSLGEDVANDLISSSVLYISIGINDYIHYYLR NVSNVQNLYLPWGFNQFLASTMRQEIKNLYNINVRRLVIMGLPPIGCAPYYLWRYKSN KGECIEEINDMIMEFNFVMRYMTEELLHELPDAHIIFCDVFQGSMDIIQNHKRYGFKA TADACCGLGRYKGWIMCMSPEMACRDASNHIWWDQFHPTDAVNAILADNVWSSRHTEM CYPMNLEKMVVSKPE" gene complement(33079096..33081102) /locus_tag="TCM_016487" /note="dbxref CacaoGD:Thecc1EG016487" mRNA complement(join(33079096..33079268,33079715..33079827, 33079914..33079994,33080114..33080166,33080266..33080374, 33080461..33080520,33080650..33080732,33080830..33081102)) /locus_tag="TCM_016487" /product="Calcium-binding EF-hand family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010853" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015411t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019554001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11351t3" CDS complement(join(33079178..33079268,33079715..33079827, 33079914..33079994,33080114..33080166,33080266..33080374, 33080461..33080520,33080650..33080732,33080830..33080899)) /locus_tag="TCM_016487" /note="paralog of Thecc1EG015411t1" /codon_start=1 /product="Calcium-binding EF-hand family protein" /protein_id="EOY25057.1" /db_xref="Phytozome:GSVIVT01019554001" /db_xref="TAIR:AT5G24270.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TVH4" /translation="MGCACVKRLVGYEDTAILAAQTCFKETEVKALYKLFRKLSSSLV DDGYISKEEFQLGLFRNSNEQSLFADRIFQLFDTNHDGFLDFGEFIRSLNVFHPDAPH SEKVAFAFQLYDIGQSGFIEPEEVKDMIWALLDESDLILSDDDVEVIIDKTFEDADSK RDGKIDLEEWKEFVARNPTMLKNMTVPYLKDMTTAFPSFVLRSDIEDDPSFENTGLKH E" gene complement(33081831..33086215) /locus_tag="TCM_016488" /note="dbxref CacaoGD:Thecc1EG016488" mRNA complement(join(33081831..33082211,33082519..33082631, 33082716..33082796,33083399..33083451,33083614..33083722, 33083816..33083875,33084051..33084133,33085101..33085253, 33086030..33086215)) /locus_tag="TCM_016488" /product="Calcineurin B-like protein 8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019555001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015411t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019555001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2536t5" CDS complement(join(33082157..33082211,33082519..33082631, 33082716..33082796,33083399..33083451,33083614..33083722, 33083816..33083875,33084051..33084133,33085101..33085191)) /locus_tag="TCM_016488" /note="paralog of Thecc1EG015411t1" /codon_start=1 /product="Calcineurin B-like protein 8" /protein_id="EOY25058.1" /db_xref="Phytozome:GSVIVT01019555001" /db_xref="TAIR:AT1G64480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FUQ7" /translation="MRAFKACFCLKKVRQKPGYEDPIILASETPFTVNEVEALHDLFK KLSSTIIDDGLIHKEEFQLALFQNSSKRNLFADRVFDLFDVKCNGVITFGEFVRSLSI FHPNAPESDKIAFLFRLYDLRQTGYIESEELKEMVFALLSESNLDLSDDVVESIVEKT MMEADMKGDGKIDEEEWREFVKKNPSIIRNMTLPYLKELTLAFPSFVLNSEVPD" mobile_element complement(33087163..33087730) /note="source:INTACT687_F13_scaffold_3-int 1298 1927" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33088216..33096780 /locus_tag="TCM_016489" /note="dbxref CacaoGD:Thecc1EG016489" mRNA join(33088216..33088319,33088594..33088684, 33088906..33088991,33089404..33089494,33089695..33089744, 33090189..33090258,33090812..33090921,33091153..33091218, 33091645..33092216,33092342..33092431,33092597..33092672, 33093011..33094283,33094396..33094470,33094618..33095745, 33095923..33096780) /locus_tag="TCM_016489" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene32138" /inference="similar to AA sequence:Phytozome:GSVIVT01019556001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc953t4" CDS join(33088616..33088684,33088906..33088991, 33089404..33089494,33089695..33089744,33090189..33090258, 33090812..33090921,33091153..33091218,33091645..33092216, 33092342..33092431,33092597..33092672,33093011..33094283, 33094396..33094470,33094618..33095745,33095923..33096147) /locus_tag="TCM_016489" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25059.1" /db_xref="Phytozome:GSVIVT01019556001" /db_xref="TAIR:AT4G10930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL43" /translation="MDVDLVTSGILDEDTIPVLDHYNDLSNFEGEKCGICMDIIIDRG VLDCCQHWFCFACIDNWATITNLCPLCQSEFQLITCVPVYDTIGSNKVEDESFSRDDD WSIEGKSNTLSFPSYYIDENAVICLDGDGCKIRSRSTTSEGDPNLDTSIACDSCDIWY HAFCVGFDPEGTSEDTWLCPRCVANQAPQESDAIPQKTNIQYGPEIANSEYVTETAFA GKLSVSLADTGETAVVVSMVGGNQWIEEPSENFLSTLEVNNDRKIELSNINGNSCNTE KPSCDKSTIQPTLEGQELELSLSRNTFSTSLSNSSVHGELKTSKAAATIKEPSSLDGV GNSLGKSLNESYTRNQLSESESSMGLHLGLSIGTFLSVDDDMKSGGSKDQVNAEFEHQ IHMEELLLLDEKTEPDNKENDDTITGIKRKHADFRSDVVISSVHEETKCKSETEAVEK KIRVEELVQMAPESQGNASVSDDTPKCPILKTVSKNHPEKEDSFPNIMSIVQGTGRRT SSKSIGCRNPADESSKGENLAGLRVKKIMRRASEDKESSIVVQKLRKEIREAVRNKSS KEIGENLFDPKLLAAFRAAISGPKTETVKKLSPSAVKMKKSLLQKGKVRENLTKKIYG DSNGRRRRAWDRDCEVEFWKYRCTRASKPEKIETLKSVLDLLRKNPEGTERGPISECQ ASNPILSRLYLADTSVFPRKDNIKPLSALKTTGSSDQSKEEHIAVEKTPVPSPDIHTV KITEANKVASKVGVLLTDLKGTKTSVLNSKVTATSSKVNFSRGSEGSSTPASSNSKVK SQKEVVVKSEDVKVDKRKLALAVLARKKASESQNGIQDRQEDNAVLKGNYPLLAQLPV DMRPTLAPSRHNKIPVSVRQAQLYRLTEHFLRKANLPIIRRTAETELAVADAINIERE VADRSNSKVVYLNLCSQELLHRSDDSKCVRAKESDTSSPSEISIDRQDQGTDECSTDL MVVEALRNAGLLSDSPPSSPHHKTEVPSEVDDSSAKVREEEPDNVFEMDSHLEADIYG DFEYDLEDEDYIGVSAEKAPKLQPEEGVSKMKVVFSTLNTEMSKSNNLAESEGHEKLG NFVVPNYSSCLLKNNTDAVIKCSTVDDGTDKSCAALDSLPDEEGEELSIAECEELYGP DKEPLISKISEASPKIYGVVDAEAPAENRASEDNEKHILHHIVNASDPGSQSKKGHKV VDALGHGTSGGESSADQIGTSENVKKKDKNSNTETDKQSDGANPVSKKVEAYVKEHIR PLCKSGVITTEQYRWAVAKTTDKVMKYHLNSKNANFLIKEGEKVKKLAEQYVEAAQQK EKDDPL" mobile_element complement(33092691..33092750) /note="source:INTACT93F_F345_scaffold_2-int 16888 16952" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33096662..33103129 /locus_tag="TCM_016490" /note="dbxref CacaoGD:Thecc1EG016490" mRNA join(33096662..33097720,33097815..33097899, 33098397..33098831,33098923..33098976,33099065..33099130, 33099329..33099424,33099504..33099632,33099941..33099993, 33100498..33100693,33101046..33101160,33101308..33101582, 33101799..33101882,33101969..33102081,33102174..33102423, 33102657..33103129) /locus_tag="TCM_016490" /product="FtsH extracellular protease family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10780.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10780.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11383t3" mRNA join(33096711..33097720,33097815..33097899, 33098397..33098831,33098923..33098976,33099065..33099130, 33099329..33099424,33099504..33099632,33099941..33099993, 33100498..33100693,33101046..33101160,33101308..33101582, 33101799..33101882,33101969..33102081,33102174..33102423, 33102767..33103062) /locus_tag="TCM_016490" /product="FtsH extracellular protease family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10780.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc557t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11383t3" CDS join(33097014..33097720,33097815..33097899, 33098397..33098831,33098923..33098976,33099065..33099130, 33099329..33099424,33099504..33099632,33099941..33099993, 33100498..33100693,33101046..33101160,33101308..33101582, 33101799..33101882,33101969..33102081,33102174..33102423, 33102657..33102845) /locus_tag="TCM_016490" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="FtsH extracellular protease family isoform 1" /protein_id="EOY25060.1" /db_xref="Phytozome:POPTR_0001s10780.1" /db_xref="TAIR:AT4G23940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22993" /translation="MTTIDTLISARVHFPKPYANLIKSIPRRIKPLNLTRKFQSRTSF LHRSFTVLCELQSSQPGETSKPKGDDFVTRVLKQNPSQVEPRYLVGNKIYTLKEKEDL SKRINLSLIEILKKKLNSKAKLKNESNESERETERSSENDNVYLSDILREYRGKLYVP EQIFGEELSEEEEFEKNLEELPKMSLEDFRKAMKSDKVKLLTSKEVSGVSYVGGHRDF VVDLKDIPGDKSLQRTKWAMRLDETEAQTLLSEYAGKRYEIERHMTSWVGKVPEYPHP VASSISSRMMVELGMVTAVMAAAAVIVGGFLAAAVFAVTSFVFVTTVYVVWPIVKPFV KLFLGIIFSILERVWDNLVDVFSDGGIFSKLYEFYTFGGVSASLEMLKPITVVLLTMV LLVRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQEL VRYLKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL VGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKESTDHLYNAATQERETTL NQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRPPNAKGRLQILKI HASKVKMSESVDLSSYANNLPGWTGAKLAQLVQEAALVAVRKRHDSILQSDMDDAVDR LTVGPKRVGIELGHQGQCRRATTELGVAMTSHLLRRYENAEVECCDRISIVPRGQTLS QVVFHRLDDESYMFERRPQLLHRLQVFLGGRAAEEVIYGRDTSRASLNYLADASWLAR KILTIWNLENPMVIHGEPPPWRKKVKFVGPRLDFEGSLYDDYDLIEPPVNFNLDDEIA QRSEELLRDMYARTVSLLRRHHAALLKAVKVLLNQKEISGEEIDFILNKYPPQTPLSL LLGEENPGSLPFIKQEQERDLERVLLTQSTSETH" CDS join(33097014..33097720,33097815..33097899, 33098397..33098831,33098923..33098976,33099065..33099130, 33099329..33099424,33099504..33099632,33099941..33099993, 33100498..33100693,33101046..33101160,33101308..33101582, 33101799..33101882,33101969..33102081,33102174..33102423, 33102767..33102799) /locus_tag="TCM_016490" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="FtsH extracellular protease family isoform 2" /protein_id="EOY25061.1" /db_xref="Phytozome:POPTR_0001s10780.1" /db_xref="TAIR:AT4G23940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22993" /translation="MTTIDTLISARVHFPKPYANLIKSIPRRIKPLNLTRKFQSRTSF LHRSFTVLCELQSSQPGETSKPKGDDFVTRVLKQNPSQVEPRYLVGNKIYTLKEKEDL SKRINLSLIEILKKKLNSKAKLKNESNESERETERSSENDNVYLSDILREYRGKLYVP EQIFGEELSEEEEFEKNLEELPKMSLEDFRKAMKSDKVKLLTSKEVSGVSYVGGHRDF VVDLKDIPGDKSLQRTKWAMRLDETEAQTLLSEYAGKRYEIERHMTSWVGKVPEYPHP VASSISSRMMVELGMVTAVMAAAAVIVGGFLAAAVFAVTSFVFVTTVYVVWPIVKPFV KLFLGIIFSILERVWDNLVDVFSDGGIFSKLYEFYTFGGVSASLEMLKPITVVLLTMV LLVRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQEL VRYLKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL VGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKESTDHLYNAATQERETTL NQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRPPNAKGRLQILKI HASKVKMSESVDLSSYANNLPGWTGAKLAQLVQEAALVAVRKRHDSILQSDMDDAVDR LTVGPKRVGIELGHQGQCRRATTELGVAMTSHLLRRYENAEVECCDRISIVPRGQTLS QVVFHRLDDESYMFERRPQLLHRLQVFLGGRAAEEVIYGRDTSRASLNYLADASWLAR KILTIWNLENPMVIHGEPPPWRKKVKFVGPRLDFEGSLYDDYDLIEPPVNFNLDDEIA QRSEELLRDMYARTVSLLRRHHAALLKAVKSSFHQTGTRT" mRNA join(<33097059..33097720,33097815..33097899, 33098397..33098831,33098923..33098976,33099065..33099130, 33099329..33099424,33099504..33099632,33099941..33099993, 33100498..33100693,33101046..33101160,33101308..33101882, 33101969..33102081,33102174..33102423,33102657..33102681) /locus_tag="TCM_016490" /product="FtsH extracellular protease family isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10780.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10780.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1122t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11383t3" mRNA join(<33097059..33097720,33097815..33097899, 33098397..33098464,33098549..33098831,33098923..33098976, 33099065..33099130,33099329..33099424,33099504..33099632, 33099941..33099993,33100498..33100693,33101046..33101160, 33101308..33101582,33101799..>33101884) /locus_tag="TCM_016490" /product="FtsH extracellular protease family isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10780.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10780.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1038t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11383t3" CDS join(<33097059..33097720,33097815..33097899, 33098397..33098464,33098549..33098831,33098923..33098976, 33099065..33099130,33099329..33099424,33099504..33099632, 33099941..33099993,33100498..33100693,33101046..33101160, 33101308..33101582,33101799..>33101882) /locus_tag="TCM_016490" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="FtsH extracellular protease family isoform 4" /protein_id="EOY25063.1" /db_xref="Phytozome:POPTR_0001s10780.1" /db_xref="TAIR:AT4G23940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22993" /translation="KPYANLIKSIPRRIKPLNLTRKFQSRTSFLHRSFTVLCELQSSQ PGETSKPKGDDFVTRVLKQNPSQVEPRYLVGNKIYTLKEKEDLSKRINLSLIEILKKK LNSKAKLKNESNESERETERSSENDNVYLSDILREYRGKLYVPEQIFGEELSEEEEFE KNLEELPKMSLEDFRKAMKSDKVKLLTSKEVSGVSYVGGHRDFVVDLKDIPGDKSLQR TKWAMRLDETEAQTLLSEYAGKRYEIERHMTSWVGKVPEYPHPVASSISSRMMVSFVF VTTVYVVWPIVKPFVKLFLGIIFSILERVWDNLVDVFSDGGIFSKLYEFYTFGGVSAS LEMLKPITVVLLTMVLLVRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFS DVAGIDEAVEELQELVRYLKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKEST DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIR IRPPNAKGRLQILKIHASKVKMSESVDLSSYANNLPGWTGAKLAQLVQEAALVAVRKR HDSILQSDMDDAVDRLTVGPKRVGIELGHQGQCRRATTELGVAMTSHLLRRYENAEVE CCDRISIVPRGQTLSQVVFHRLDDESYMFERRPQLLHRLQ" CDS join(<33097059..33097720,33097815..33097899, 33098397..33098831,33098923..33098976,33099065..33099130, 33099329..33099424,33099504..33099632,33099941..33099993, 33100498..33100693,33101046..33101160,33101308..33101762) /locus_tag="TCM_016490" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="FtsH extracellular protease family isoform 3" /protein_id="EOY25062.1" /db_xref="Phytozome:POPTR_0001s10780.1" /db_xref="TAIR:AT4G23940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22993" /translation="KPYANLIKSIPRRIKPLNLTRKFQSRTSFLHRSFTVLCELQSSQ PGETSKPKGDDFVTRVLKQNPSQVEPRYLVGNKIYTLKEKEDLSKRINLSLIEILKKK LNSKAKLKNESNESERETERSSENDNVYLSDILREYRGKLYVPEQIFGEELSEEEEFE KNLEELPKMSLEDFRKAMKSDKVKLLTSKEVSGVSYVGGHRDFVVDLKDIPGDKSLQR TKWAMRLDETEAQTLLSEYAGKRYEIERHMTSWVGKVPEYPHPVASSISSRMMVELGM VTAVMAAAAVIVGGFLAAAVFAVTSFVFVTTVYVVWPIVKPFVKLFLGIIFSILERVW DNLVDVFSDGGIFSKLYEFYTFGGVSASLEMLKPITVVLLTMVLLVRFTLSRRPKNFR KWDLWQGIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPDLFDKMGI KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRA KVNKPSVIFIDEIDALATRRQGIFKESTDHLYNAATQERETTLNQLLIELDGFDTGKG VIFLAATNRRDLLDPALLRPGRFDRKIRIRPPNAKGRLQILKIHASKVKMSESVDLSS YANNLPGWTGAKLAQLVQEAALVAVRKRHDSILQSDMDDAVDRLTVGPKRVGIELGHQ GQCRRATTELGVAMTSHLLRRYENAEVECCDRISIVPRGQVLLVSLFSTIFFSSTLLF FEKVILDAWLSCMLINSPKVGQNKSTSLKGFPLPNVWRWFK" gene 33103237..33107553 /locus_tag="TCM_047027" /note="dbxref CacaoGD:Thecc1EG047027" mRNA join(33103237..33103682,33104357..33105453, 33105538..33105624,33105753..33105838,33106607..33107553) /locus_tag="TCM_047027" /product="Galactose-binding protein isoform 2" /inference="similar to AA sequence:frave:gene32141" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage" mRNA join(33103404..33103682,33104357..33105453, 33105536..33105624,33105752..33105838,33106607..33107275) /locus_tag="TCM_047027" /product="Galactose-binding protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene32141" /inference="similar to AA sequence:frave:gene32141" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11379t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11379t1" CDS join(33103454..33103682,33104357..33105453, 33105538..33105624,33105753..33105838,33106607..33106841) /locus_tag="TCM_047027" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene32141" /codon_start=1 /product="Galactose-binding protein isoform 2" /protein_id="EOY25065.1" /db_xref="TAIR:AT4G23950.2" /translation="MKKPRNGPSIVYVTCRSNCNSSRSEETKTNGDNKNSSNISSNNG KSFYEVSLSVIISLWCLVFLFYSRLGLSHENGGVANRGDNCSDGVLLELNKSVHYNSS AVYEEFVKYEYSLRKTNRLEEVILRVLGYMPFLCDVHEQEGQNRSKKMEQPNAKSPSA YLNLDEFRNITRQARSEDPPDKLINITHRLETDGSEYNYASAMKGAKVVAHNKEAKGA NNILGKDHDKYLRNPCSAEGKFVVIELAEETLVDAVKIANFEHYSSNFKEFELSGSLN YPTEIWSPLGKFVAANVKQIQTFKLSEPKWLRYLKLNLLSHYGSEFYCTLSAVEVYGV DAIERMLEDLFEPSEQHVLTKLGDSNSTGPSPKPDVCSFDGKKNDEAQNGAQTAVLGI ENAEDVQKLNETVTKNPVTTSRVPDPLTDIKQLPVGRIPGDTVLKILMQKINKELSRF SLLLEKSRTEIKEIMQWKEMTERGFAELELWKAAVSSSVDALFRENSMLRLDVEKIVR DQASLESKELAVLAVSLFFACIAILKLVSTRVATLLGANQPDKVCRTSRGWVLILVSS SMTIFINLLSS" CDS join(33103454..33103682,33104357..33105453, 33105536..33105595) /locus_tag="TCM_047027" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene32141" /codon_start=1 /product="Galactose-binding protein isoform 1" /protein_id="EOY25064.1" /db_xref="TAIR:AT4G23950.2" /translation="MKKPRNGPSIVYVTCRSNCNSSRSEETKTNGDNKNSSNISSNNG KSFYEVSLSVIISLWCLVFLFYSRLGLSHENGGVANRGDNCSDGVLLELNKSVHYNSS AVYEEFVKYEYSLRKTNRLEEVILRVLGYMPFLCDVHEQEGQNRSKKMEQPNAKSPSA YLNLDEFRNITRQARSEDPPDKLINITHRLETDGSEYNYASAMKGAKVVAHNKEAKGA NNILGKDHDKYLRNPCSAEGKFVVIELAEETLVDAVKIANFEHYSSNFKEFELSGSLN YPTEIWSPLGKFVAANVKQIQTFKLSEPKWLRYLKLNLLSHYGSEFYCTLSAVEVYGV DAIERMLEDLFEPSEQHVLTKLGDSNSTGPSPKPDVCSFDGKKNDEAQNGAQTAVLGI ENAEDVQKLNETVTKNPVTTSRVPDPLTDIKQLPVGRIPGDTVLKILMQKRSIRSYQD FLCFWRKAEQK" gene 33107744..33110749 /locus_tag="TCM_047028" /note="dbxref CacaoGD:Thecc1EG047028" mRNA join(33107744..33108382,33109213..33109409, 33110466..33110749) /locus_tag="TCM_047028" /product="Nuclear transport factor 2 family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010861" /inference="similar to AA sequence:Phytozome:GSVIVT01019559001" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11381t1" CDS join(33107909..33108382,33109213..33109409, 33110466..33110724) /locus_tag="TCM_047028" /codon_start=1 /product="Nuclear transport factor 2 family protein" /protein_id="EOY25066.1" /db_xref="Phytozome:GSVIVT01019559001" /db_xref="TAIR:AT4G10925.3" /translation="MEIAYSLSIALQSHQQLIIATIITLLSLLLAVRSFFKRPHKSNA LGPVTSTGKKEPEEATSSPPCNCSCSCNGTSHSAVFLNGGSAGTVQEGMVTADVSKVA AERQSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF TLEQDSVTPVNGWKAYYAATRAIMNVNAEFFNIIRDRSLQAMSRFWLNADYVKCVHAS GELFSGYNAVIQSWQLAFNWEQGVDFQVIDVRARVLTDMAWVTMKTFVDMDNGAFNMT NVFEFHNGRWYLVHHHSSVMLADGDVEQQIVHG" gene 33111306..33113446 /locus_tag="TCM_016492" /note="dbxref CacaoGD:Thecc1EG016492" mRNA join(33111306..33111645,33112337..33112578, 33113109..33113446) /locus_tag="TCM_016492" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10810.1" /inference="similar to AA sequence:Phytozome:POPTR_1840s00200.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10256t2" CDS join(33111404..33111645,33112337..33112578, 33113109..33113155) /locus_tag="TCM_016492" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25067.1" /db_xref="Phytozome:POPTR_1840s00200.1" /db_xref="TAIR:AT5G42070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RCV4" /translation="MAMALLSAPPLSHQTSFFQRPYSPSFSSITFFKYPSKPTIPLST TSSSSTSTAEDKPSASPDVIPVQSEPATVAVDQPPFRGCKACGREELERGCNGEGRIQ GGIATVPGFGWWPIKAYRPCPGFVASGGRYRRRGQSMDEVASGRIGRASPVGTNDEAE SPRKSKVKEVQEITNA" gene 33113922..33116298 /locus_tag="TCM_016493" /note="dbxref CacaoGD:Thecc1EG016493" mRNA join(33113922..33114200,33114296..33114401, 33115834..33115968,33116091..33116298) /locus_tag="TCM_016493" /product="Transcriptional coactivator p15 (PC4) family protein (KELP)" /inference="alignment:exonerate- protein:2:TAIR:AT4G10920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005132t2" /inference="similar to AA sequence:ricco:30190.m010865" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04111t00001" CDS join(33113925..33114200,33114296..33114401, 33115834..33115928) /locus_tag="TCM_016493" /note="dbxref ricco:30190.m010865; paralog of Thecc1EG005132t2" /codon_start=1 /product="Transcriptional coactivator p15 (PC4) family protein (KELP)" /protein_id="EOY25068.1" /db_xref="TAIR:AT4G10920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O65155" /translation="MDAETRGKIEQTVRGILQEANMDEMTEYKIRQMASQKLELNLSE SKYKAYVRHIVNSFLEEQKAKQEEADDDDNNNKNNKEFDDDGDVIVCRLSERRRVMIQ EFRGKSLVSIREFYKKDGKELPSSKGISLTEEQWSALKKNVPNIEKAVRKMESQTM" gene complement(33116311..33118325) /locus_tag="TCM_016494" /note="dbxref CacaoGD:Thecc1EG016494" mRNA complement(join(33116311..33116999,33117098..33117247, 33117360..33117687,33118078..33118325)) /locus_tag="TCM_016494" /product="Phosphatase 2C family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400058997" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034001t3" /inference="similar to AA sequence:ricco:30170.m014008" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1075t2" CDS complement(join(33116712..33116999,33117098..33117247, 33117360..33117687,33118078..33118088)) /locus_tag="TCM_016494" /note="dbxref ricco:30170.m014008; paralog of Thecc1EG034001t3" /codon_start=1 /product="Phosphatase 2C family protein, putative" /protein_id="EOY25069.1" /db_xref="TAIR:AT4G16580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLN7" /translation="MADRVGVQKRNLMMLSGSFYIAKDRDSRPQGDDSHFICEEKQTI GLADGVGGWSSHGVDAGLYARELMNNSLLAILTQPDRQVDPMEVLNEAFRKTKAEGSS TVCIITLQEDNILHAVNMGDSGFMLIRQGAAVYKSPIQQHSFNYPYQLGNSANSDKPW QAQVIKLAVEPGDVIIAGTDGLFDNLSESLILEAAAAGIELGLDPEEVAWPVAQQAYN ISLDREAVTPYVQASMMAGQRHTGGKKDDITVIVSRILDT" gene complement(33119237..33120406) /locus_tag="TCM_016495" /note="dbxref CacaoGD:Thecc1EG016495" mRNA complement(33119237..33120406) /locus_tag="TCM_016495" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10860.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10860.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12051t1" CDS complement(33119399..33120013) /locus_tag="TCM_016495" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25070.1" /db_xref="Phytozome:POPTR_0001s10860.1" /translation="MGNCSLKGVTGECSNSIRVLTDAGEIIDIKGPKLAREIANSFPG YAVCRRGQASLPLPEDECLVSGGFYYLLPMEKVHKSGDTGVCEQVNKEAVKKLEVDWM NRIEPPKMSSADFVENLSSGSALEVLPSQKNGVWKVKLVISSQQLEDILSEQVNTEAL IEKMRMAAASSATLTPKRSKSSWVVGWKPALSNVFKVPIDNKVA" gene 33121386..33123142 /locus_tag="TCM_016496" /note="dbxref CacaoGD:Thecc1EG016496" mRNA 33121386..33123142 /locus_tag="TCM_016496" /product="Electron transporter, putative" /inference="alignment:exonerate- protein:2:ricco:30068.m002512" /inference="similar to AA sequence:ricco:30068.m002512" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15896t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc483t6" CDS 33121769..33122959 /locus_tag="TCM_016496" /note="dbxref ricco:30068.m002512" /codon_start=1 /product="Electron transporter, putative" /protein_id="EOY25071.1" /db_xref="TAIR:AT1G64500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYM7" /translation="MGCSASKRNQAIVDIYRPPPTSFAVFDINAIDEPWVKVEQAQQE NQEKKPTHVPAVILEKLNTFETDAPYSWDEVSKALENLKPTLNNNNKKLPAPTSPPKP AKQVNKQQPRKCLTFHTLEELDAKLSSKPAANELRKTESMGKETGTKTKTKTTELNNP EPSKPAANELRKTESMRKETGTKTKTTELNNPEPPVPDSTGFKSVKENIFILRDRQER EKEERMGNYDKLMSKRDPLSQFPEMCPPGGADSVVIYTTSLRGVRRTFEDCTKVREIF EIQRVVFDERDVSLHGEFLNELRSILGKEASVPRVFVKGRYVGGVEEVSELDESGKLG KILNKARVEKGVGRQACGGCGGARFVPCLECGGSCKVVVSGDKRERCGKCNENGLVHC PACV" gene complement(33124605..33127068) /locus_tag="TCM_016497" /note="dbxref CacaoGD:Thecc1EG016497" mRNA complement(join(33124605..33125253,33125362..33125472, 33125616..33125699,33126026..33126126,33126331..33127011)) /locus_tag="TCM_016497" /product="DCD domain protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G42050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017191t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s14180.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01707t00002" mRNA complement(join(33125170..33125253,33125362..33126126, 33126331..>33126950)) /locus_tag="TCM_016497" /product="DCD domain protein isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT5G42050.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14180.2" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.56 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01707t00001; inference alignment:Newbler:10:TSA:cgbaP2_g01707t00002" CDS complement(join(33125197..33125253,33125362..33125472, 33125616..33125699,33126026..33126126,33126331..33126958)) /locus_tag="TCM_016497" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017191t2" /codon_start=1 /product="DCD domain protein isoform 1" /protein_id="EOY25072.1" /db_xref="Phytozome:POPTR_0003s14180.2" /db_xref="TAIR:AT5G42050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXN8" /translation="MENNQQSFWQFSDQLRVQNSNLANLSLNDSIWSNSYVSKRPDER RNFDIRVGGEVNSVNNLKPKVSDFNSFNNDGWKIGASSNNIGFGPIGLMGSQNNVGIN GGFNKGIYSKPGNNNNFNLNLKGNKNKGEDDHGSKIGKKNSNKKNNNNNSDNNNNNNG DNKDGKSAADKRFKTLPPSESLPRNETVGGYIFVCNNDTMQENLRRQLFGLPPRYRDS VRAITPGLPLFLYNYSTHQLHGVFEAASFGGTNIDPTAWEDKKCPGESRFPAQVKVMT RKICEPLEEDSFRPILHHYDGPKFRLELNVPEALSLLDIFYEQNALSSFI" mRNA complement(join(33125364..33125472,33125551..33125581, 33125621..33125699,33126026..33126126,33126331..33127068)) /locus_tag="TCM_016497" /product="DCD domain protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G42050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017191t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s14180.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc555t10; inference alignment:Newbler:10:TSA:cgbaP2_g01707t00002" CDS complement(join(33125571..33125581,33125621..33125699, 33126026..33126126,33126331..33126958)) /locus_tag="TCM_016497" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017191t2" /codon_start=1 /product="DCD domain protein isoform 2" /protein_id="EOY25073.1" /db_xref="Phytozome:POPTR_0003s14180.2" /db_xref="TAIR:AT5G42050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXN8" /translation="MENNQQSFWQFSDQLRVQNSNLANLSLNDSIWSNSYVSKRPDER RNFDIRVGGEVNSVNNLKPKVSDFNSFNNDGWKIGASSNNIGFGPIGLMGSQNNVGIN GGFNKGIYSKPGNNNNFNLNLKGNKNKGEDDHGSKIGKKNSNKKNNNNNSDNNNNNNG DNKDGKSAADKRFKTLPPSESLPRNETVGGYIFVCNNDTMQENLRRQLFGLPPRYRDS VRAITPGLPLFLYNYSTHQLHGVFEAASFGGTNIDPTAWEDKKCPGESRFPEEI" CDS complement(join(33125990..33126126,33126331..>33126949)) /locus_tag="TCM_016497" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DCD domain protein isoform 3" /protein_id="EOY25074.1" /db_xref="Phytozome:POPTR_0003s14180.2" /db_xref="TAIR:AT5G42050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXN8" /translation="NQQSFWQFSDQLRVQNSNLANLSLNDSIWSNSYVSKRPDERRNF DIRVGGEVNSVNNLKPKVSDFNSFNNDGWKIGASSNNIGFGPIGLMGSQNNVGINGGF NKGIYSKPGNNNNFNLNLKGNKNKGEDDHGSKIGKKNSNKKNNNNNSDNNNNNNGDNK DGKSAADKRFKTLPPSESLPRNETVGGYIFVCNNDTMQENLRRQLFGLPPRYRDSVRA ITPGLPLFLYNYSTHQLHGVFEVCTSIFSYFPC" gene 33129950..33133821 /locus_tag="TCM_016498" /note="dbxref CacaoGD:Thecc1EG016498" mRNA join(33129950..33130568,33131333..33131691, 33131794..33132225,33132339..33132512,33132613..33132726, 33132947..33133048,33133258..33133324,33133480..33133821) /locus_tag="TCM_016498" /product="3-ketoacyl-acyl carrier protein synthase I" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019565001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029513t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10890.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2401t1" CDS join(33130400..33130568,33131333..33131691, 33131794..33132225,33132339..33132512,33132613..33132726, 33132947..33133048,33133258..33133324,33133480..33133547) /locus_tag="TCM_016498" /note="paralog of Thecc1EG029513t1" /codon_start=1 /product="3-ketoacyl-acyl carrier protein synthase I" /protein_id="EOY25075.1" /db_xref="Phytozome:POPTR_0001s10890.1" /db_xref="TAIR:AT5G46290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P52410" /translation="MAGIATAACPSGLLFRNREVGSNNGASLAQYNGLRAVESVQLAL TCTKPNRFISSSAPKGRTIRAVASPTVSAPKREKDPKKRIVITGMGLVSVFGSDIDNF YNKLLEGESGISEIDRFDASTYSVRFGGQIRDFSSKGYIDGKNDRRLDDCWRYCLVAG KRALEDANLGSQVLEKMDRTRVGVLVGTGMGGLTVFSNGVEALIQKGYKKITPFFIPY SITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADIMVAGGTEAAI IPTGIGGFIACRALSQRNNEPKKASRPWDKDRDGFVMGEGSGVLIMESLEHAMKRGAN IIAEYLGGAVTCDAHHMTDPRSDGLGVSSCITKSLDDAGVSPEEVNYVNAHATSTLAG DLAEVNAIKKVFKDTSEIKMNGTKSMIGHGLGAAGGLEAIATIKAITTGWLHPTINQD NLEPDVTIDTVPNVKKQHEVNVGISNSFGFGGHNSVVVFAPFKP" mobile_element 33136986..33137201 /note="source:CACAO_on_S_E46_scaffold_2 468 667" /mobile_element_type="transposon:TIR/Mutator" gene complement(33139728..33140757) /locus_tag="TCM_016499" /note="dbxref CacaoGD:Thecc1EG016499" mRNA complement(join(33139728..33139813,33139894..33140128, 33140290..33140757)) /locus_tag="TCM_016499" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(join(33139777..33139813,33139894..33140128, 33140290..33140323)) /locus_tag="TCM_016499" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25076.1" /translation="MRVVGVNGEALGRLEVRDLPWEGGDNYGLLPLRCGVHVNTWEVL DLDPSNLLSFPDNLRAVRWPSSTHVTQVAKLEFTPGWISVGSPVQVEYYQKLESKAM" gene 33140437..33145642 /locus_tag="TCM_016500" /note="dbxref CacaoGD:Thecc1EG016500" mRNA join(33140437..33141077,33141195..33141310, 33141474..33141569,33141916..33141972,33142118..33142270, 33142365..33142449,33142629..33142719,33142874..33143038, 33143119..33143232,33143323..33143395,33143475..33143628, 33143714..33144324,33144436..33144623,33144716..33145518) /locus_tag="TCM_016500" /product="Auxin response factor 9 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005126t1" /inference="similar to AA sequence:ricco:30068.m002516" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04329t00001" mRNA join(33140507..33141077,33141195..33141310, 33141474..33141569,33141916..33141972,33142118..33142270, 33142365..33142449,33142629..33142719,33142874..33143038, 33143119..33143232,33143323..33143395,33143475..33143628, 33143729..33144324,33144436..33144623,33144716..33145642) /locus_tag="TCM_016500" /product="Auxin response factor 9 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005126t1" /inference="similar to AA sequence:ricco:30068.m002516" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc903t2; inference alignment:Newbler:10:TSA:cgbaP2_g04329t00001" mRNA join(33140648..33141077,33141195..33141310, 33141474..33141569,33141916..33141972,33142118..33142270, 33142365..33142449,33142629..33142719,33142874..33143038, 33143119..33143232,33143323..33143395,33143475..33143628, 33144038..33144324,33144436..33144623,33144716..33145642) /locus_tag="TCM_016500" /product="Auxin response factor 9 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30068.m002516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005126t2" /inference="similar to AA sequence:ricco:30068.m002516" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc905t5; inference alignment:Newbler:10:TSA:cgbaP2_g04329t00001" mRNA join(33140648..33141077,33141195..33141310, 33141474..33141569,33141916..33141972,33142118..33142270, 33142365..33142449,33142629..33142719,33142874..33143038, 33143119..33143232,33143323..33143395,33143475..33143628, 33144038..33144324,33144436..33144607,33144716..33145642) /locus_tag="TCM_016500" /product="Auxin response factor 9 isoform 4" /inference="alignment:exonerate- protein:2:ricco:30068.m002516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005126t2" /inference="similar to AA sequence:ricco:30068.m002516" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc905t1; inference alignment:Newbler:10:TSA:cgbaP2_g04329t00001" CDS join(33141023..33141077,33141195..33141310, 33141474..33141569,33141916..33141972,33142118..33142270, 33142365..33142449,33142629..33142719,33142874..33143038, 33143119..33143232,33143323..33143395,33143475..33143628, 33143714..33144324,33144436..33144623,33144716..33144854) /locus_tag="TCM_016500" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002516; paralog of Thecc1EG005126t1" /codon_start=1 /product="Auxin response factor 9 isoform 1" /protein_id="EOY25077.1" /db_xref="TAIR:AT4G23980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYN1" /translation="MMANRGGSFSQTNNVSSEGDGVDDLYMELWKLCAGPLVEVPRAN ERVYYFPQGHMEQLEASTNQELNQRIPLFNLPPKILCRVVHIQLLAEQETDEVYAQIT LLPEANQPEPTSPDQSPPESQRPTVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLD MNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLR GENGELCVGVRRVARQQSSMPSSVISSQSMHLGVLATASHAVSTQTLFVVYYKPRTSQ FIIGLNRYLEALNNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSPHWKDSQWRSL KVQWDEPASIPRPDRVSPWEIEPFAAPIPPTLGQPLAAKNKRPRPPTEIPALDLSSTA SAPWNSGVMHSHDLTRRNITAEAKRNENHVMWHHMQTDMNSNCSSISKTQNEGSWLSS PGMSVSQHLFPDGREDSKSVSGWPVLSGFSKQQLKNESTFDPIEKVKKFETASSCRLF GIELINHSASSTPLERTPTQLSTMTGGSTEGHGQSSLSPADSDQKSEISKDSKGKKQE QLQVSAKEIQSRQSCSSSTRSRTKVQMQGVAVGRAVDLTMLEGYDQLIDELEEMFDIK GGLRPRNKWEIVYTDDEGDMMLVGDDPWLEFCNMVRRIFICSSQDVKKMSTGSKLPMA SIEVEGTVISSDSAEN" CDS join(33141023..33141077,33141195..33141310, 33141474..33141569,33141916..33141972,33142118..33142270, 33142365..33142449,33142629..33142719,33142874..33143038, 33143119..33143232,33143323..33143395,33143475..33143628, 33143729..33144324,33144436..33144623,33144716..33144854) /locus_tag="TCM_016500" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002516; paralog of Thecc1EG005126t1" /codon_start=1 /product="Auxin response factor 9 isoform 2" /protein_id="EOY25078.1" /db_xref="TAIR:AT4G23980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYN1" /translation="MMANRGGSFSQTNNVSSEGDGVDDLYMELWKLCAGPLVEVPRAN ERVYYFPQGHMEQLEASTNQELNQRIPLFNLPPKILCRVVHIQLLAEQETDEVYAQIT LLPEANQPEPTSPDQSPPESQRPTVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLD MNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLR GENGELCVGVRRVARQQSSMPSSVISSQSMHLGVLATASHAVSTQTLFVVYYKPRTSQ FIIGLNRYLEALNNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSPHWKDSQWRSL KVQWDEPASIPRPDRVSPWEIEPFAAPIPPTLGQPLAAKNKRPRPPTEIPALASAPWN SGVMHSHDLTRRNITAEAKRNENHVMWHHMQTDMNSNCSSISKTQNEGSWLSSPGMSV SQHLFPDGREDSKSVSGWPVLSGFSKQQLKNESTFDPIEKVKKFETASSCRLFGIELI NHSASSTPLERTPTQLSTMTGGSTEGHGQSSLSPADSDQKSEISKDSKGKKQEQLQVS AKEIQSRQSCSSSTRSRTKVQMQGVAVGRAVDLTMLEGYDQLIDELEEMFDIKGGLRP RNKWEIVYTDDEGDMMLVGDDPWLEFCNMVRRIFICSSQDVKKMSTGSKLPMASIEVE GTVISSDSAEN" CDS join(33141023..33141077,33141195..33141310, 33141474..33141569,33141916..33141972,33142118..33142270, 33142365..33142449,33142629..33142719,33142874..33143038, 33143119..33143232,33143323..33143395,33143475..33143628, 33144038..33144324,33144436..33144623,33144716..33144854) /locus_tag="TCM_016500" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30068.m002516; paralog of Thecc1EG005126t2" /codon_start=1 /product="Auxin response factor 9 isoform 3" /protein_id="EOY25079.1" /db_xref="TAIR:AT3G61830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYN1" /translation="MMANRGGSFSQTNNVSSEGDGVDDLYMELWKLCAGPLVEVPRAN ERVYYFPQGHMEQLEASTNQELNQRIPLFNLPPKILCRVVHIQLLAEQETDEVYAQIT LLPEANQPEPTSPDQSPPESQRPTVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLD MNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLR GENGELCVGVRRVARQQSSMPSSVISSQSMHLGVLATASHAVSTQTLFVVYYKPRTSQ FIIGLNRYLEALNNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSPHWKDSQWRSL KVQWDEPASIPRPDRVSPWEIEPFAAPIPPTLGQPLAAKNKRPRPPTEIPALEVKKFE TASSCRLFGIELINHSASSTPLERTPTQLSTMTGGSTEGHGQSSLSPADSDQKSEISK DSKGKKQEQLQVSAKEIQSRQSCSSSTRSRTKVQMQGVAVGRAVDLTMLEGYDQLIDE LEEMFDIKGGLRPRNKWEIVYTDDEGDMMLVGDDPWLEFCNMVRRIFICSSQDVKKMS TGSKLPMASIEVEGTVISSDSAEN" CDS join(33141023..33141077,33141195..33141310, 33141474..33141569,33141916..33141972,33142118..33142270, 33142365..33142449,33142629..33142719,33142874..33143038, 33143119..33143232,33143323..33143395,33143475..33143628, 33144038..33144324,33144436..33144607,33144716..33144768) /locus_tag="TCM_016500" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30068.m002516; paralog of Thecc1EG005126t2" /codon_start=1 /product="Auxin response factor 9 isoform 4" /protein_id="EOY25080.1" /db_xref="TAIR:AT2G46530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYN1" /translation="MMANRGGSFSQTNNVSSEGDGVDDLYMELWKLCAGPLVEVPRAN ERVYYFPQGHMEQLEASTNQELNQRIPLFNLPPKILCRVVHIQLLAEQETDEVYAQIT LLPEANQPEPTSPDQSPPESQRPTVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLD MNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLR GENGELCVGVRRVARQQSSMPSSVISSQSMHLGVLATASHAVSTQTLFVVYYKPRTSQ FIIGLNRYLEALNNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSPHWKDSQWRSL KVQWDEPASIPRPDRVSPWEIEPFAAPIPPTLGQPLAAKNKRPRPPTEIPALEVKKFE TASSCRLFGIELINHSASSTPLERTPTQLSTMTGGSTEGHGQSSLSPADSDQKSEISK DSKGKKQEQLQVSAKEIQSRQSCSSSTRSRTKVQMQGVAVGRAVDLTMLEGYDQLIDE LEEMFDIKGGLRPRNKWEIVYTDDEGDMMLVGNFVTWSEEYLSVQARM" gene 33147530..33151923 /locus_tag="TCM_016501" /note="dbxref CacaoGD:Thecc1EG016501" mRNA join(33147530..33148646,33149720..33149869, 33149978..33150103,33150202..33150645,33150732..33151079, 33151174..33151923) /locus_tag="TCM_016501" /product="Cellulose synthase like G3, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019568001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016503t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14220.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3970t1" CDS join(33148032..33148646,33149720..33149869, 33149978..33150103,33150202..33150645,33150732..33151079, 33151174..33151719) /locus_tag="TCM_016501" /note="paralog of Thecc1EG016503t1" /codon_start=1 /product="Cellulose synthase like G3, putative" /protein_id="EOY25081.1" /db_xref="Phytozome:POPTR_0003s14220.1" /db_xref="TAIR:AT4G23990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVN5" /translation="MEGHHLRGCSTAYSAHAFPLHTLKPSSRAGLNRVFAAVYTCAIL ALFYRHAQTLLYSKTLVSFYVTLTLFISDLILAFMWANGQAFRIRPVYRKEYPENIEK AMKTSDFPALDVFICTADPWKEPPMRVVNTALSVMAYDYPTEKISVYVSDDGGSALTL FAFMEAAKFAAHWLPFCRKNNILERSPDEYFASNYSRTPETEKIKMIYESMKVRVEHV VETGKVGEEYITSYQDRHAISKWTDEFTRQNHPTVIQVLLEQNKDKDVAGHWLPNLVY VSRQKSKTSPHHFKAGALNVLVRVSAAMTNAPLILTLDCDMYSNDPETPIRVLCYALD PKIQNKLAYIQFPQEFHGLNKSDIYACEHKHLFKLNPIGFDGLSGPNYVGTGCFFRRR AFFGGPSTLVPPEIKELSPDCVVNKPITVQSVLALAHHVAGCNYEDQTKWGSKIGFRY GSLVEDYYTGFRLQCEGWMSIFCYPERAAFLGDVPFNLLDALGQNKRWAIGLLEVAFS RYSTITYGVKAMGLLMGLGYSYYAFWPALSIPITTYSFLPQLALHSGVSIFPKVSEPW FFLYMFLFLGAYGQDCLEFVLGGGTIQRWWSNQRMWMIRGLSCYLFGLTEFFLKSIGI STQGFNVTSKVIDDEQSKRYDQGRFEFGVPSPMFVTLTMAAIINLFSFICGLIKFLNG SNKEGLFMHLFLTGSIVMNCLPIYQAVALRSDKGKMPIRTTITATFLASALYAVSSSI LK" gene 33152222..33168455 /locus_tag="TCM_016502" /note="dbxref CacaoGD:Thecc1EG016502" mRNA join(33152222..33152893,33154329..33154478, 33154604..33154729,33154834..33155280,33155373..33155720, 33155819..33156325,33157570..33157719,33157920..33157970, 33158075..33158521,33158657..33158932,33160009..33160571, 33168415..33168455) /locus_tag="TCM_016502" /product="Cellulose synthase-like protein G3" /inference="alignment:exonerate- protein:2:ricco:30068.m002519" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016503t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019581001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1532t9" CDS join(33152282..33152893,33154329..33154478, 33154604..33154729,33154834..33155280,33155373..33155720, 33155819..33156325,33157570..33157719,33157920..33157970, 33158075..33158521,33158657..33158722) /locus_tag="TCM_016502" /note="paralog of Thecc1EG016503t1" /codon_start=1 /product="Cellulose synthase-like protein G3" /protein_id="EOY25082.1" /db_xref="Phytozome:GSVIVT01019581001" /db_xref="TAIR:AT4G23990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HU42" /translation="MDGRGLRARRTTHAPPLHKFEPLRRTALNRLFAAVYACAIIALL YRHAQTLLNPATSLLSFSLSLSLLISDLVLAFMWTGAQAFRMCPIRRKEFPENLRKII KEEDFPGLDVFICTADPYKEPPMNVVNTALSLMAYDYPTEKISVYVSDDGGSAFTLFA FMEAAKFASHWLPFCREHNMMERSPEVYFASTYHSLSPEIEKIKMMYKTIKVKVEHIV DKGEISDEYIVDNEYREAFSKWTDGFTRMDHPAVVQVILDKSKDRDVLGNFLPNLIYV SRQKSKTSPHHFKAGALNVLLRVSAVMTNAPLILTQDCDMYSNDPQTPHRVLCYLLDP ALQSKLAYIQFPQRFHGLNQTDIYASEYKREFQINTMGLDGLIGPGYMGSGCFFRRRA FFGGPSTLVQPEIPELSPDHVVDKPINSREILSLAHNVAGCDYENQTEHWGFKNGFRY GSLVEDFYTGYRLQCEGWKSLFCHPERAAFLGDVPITLLDLLSQCKRWCIGLLEVAFS KFNTLIFGSRSMGLLMGLAYSHYAFWPIWCIPVTLYSFVPQLALLNKVSIFPKVSEPW CFLYVFLFLGAYGQDLLDFVLARGTVQRWWNAQRMWMIRALSCYLFSSVEYLLKSLRI STHAFSLTSKVLDDEQSKRYGQGIFEFGVPSPLFVPLTMAAIINLLSFAWGLTEFWDN GNKEGLALQMVLAGFIVLNCLPIYGAIALRSDKGKMPTQIIVISTFLSMMYEIMKVKV EYIIDKGEISDEYIIDNAYREACSKWTDGFTRMDHPTVAQKSKTSPHHFKAGALNVLL RVSAVMTNAPLILTQDCDMYSNDPQTPIRVLCYLLNPALQSKLAYIQFPQRFHGLNQT DIYVFEYKHLFQINPMGFDGIMGSNYVGSDCFFCRRAFFGGPSTLVPTEIPELSPDHV VNKPINSQKNFSLAHNVASCDYENQTEHWGSKDIDFSVKDGRAYSVILRGQHF" mobile_element 33153442..33153521 /note="source:scaffold_1_CACTA_0011 7469 7550" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33158885..33160178) /note="source:CACAO_M_E44224_F9_scaffold_5 1 1289" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33159867..33177018 /locus_tag="TCM_016503" /note="dbxref CacaoGD:Thecc1EG016503" mRNA join(33159867..33160255,33160508..33160571, 33172378..33173193,33174587..33174736,33174862..33174987, 33175092..33175538,33175631..33175978,33176072..33177018) /locus_tag="TCM_016503" /product="Cellulose synthase like G3, putative" /inference="alignment:exonerate- protein:2:ricco:30068.m002519.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016506t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14220.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11391t2" mobile_element 33161279..33161511 /note="source:INTACT639F_F363_scaffold_5-int 7460 7689" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33161507..33161999) /note="source:CACAO_on_E683_scaffold_9 1323 1828" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 33162639..33163515 /locus_tag="TCM_016504" /note="dbxref CacaoGD:Thecc1EG016504" mRNA join(33162639..33162926,33162998..33163281, 33163378..33163515) /locus_tag="TCM_016504" /product="Cellulose synthase protein G1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016505t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14220.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS join(33162665..33162926,33162998..33163281, 33163378..33163410) /locus_tag="TCM_016504" /note="paralog of Thecc1EG016505t1" /codon_start=1 /product="Cellulose synthase protein G1" /protein_id="EOY25084.1" /db_xref="Phytozome:POPTR_0003s14220.1" /db_xref="TAIR:AT4G24010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q570S7" /translation="MEALGRRGHYTSALAPTDAPHPFHTVEHLRHMVVNRVFAAVYTC AILALLYRHVRTLFLHSTTLISFLSLLFSDLVLAFMWGASQAFRLDVFICTADPYKEP PMSVVNMALSLTAYDYPMEKISIYVSDDGGSPLTLFAFMEAAKFASHWLPFCRENDIM DRNPDVYFASGHSGSSKEENIKQHFWHQLFMQ" mobile_element 33163810..33164027 /note="source:scaffold_5_CACTA_0584 7140 7316" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33166786..33167079 /note="source:CACAO_M_E70014_F74_scaffold_10 1251 1544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33167181..33168307 /note="source:CACAO_M_E3969_F127_scaffold_1 1035 2160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33169601..33171038) /note="source:INTACT405F_F91_scaffold_4-int 16622 18093" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33172129..33172337) /note="source:CACAO_Mutator_E1149_scaffold_5 4446 4646" /mobile_element_type="transposon:TIR/Mutator" CDS join(33172582..33173193,33174587..33174736, 33174862..33174987,33175092..33175538,33175631..33175978, 33176072..33176623) /locus_tag="TCM_016503" /note="paralog of Thecc1EG016506t1" /codon_start=1 /product="Cellulose synthase like G3, putative" /protein_id="EOY25083.1" /db_xref="Phytozome:POPTR_0003s14220.1" /db_xref="TAIR:AT4G23990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVN5" /translation="MGGRGLIAGRTAHAPPLHKFEPLRRTALNRLFAAVYASAIIALL YRHAQTLIYSATSLLSFSLSLSLLISDLVLAFMWTGAQAFRVCPIRRKEFPENLRKII KEEDFPGLDVFICTADPYKEPPMNVVNTALSLMAYDYPTEKISVYVSDDGGSAFTLFA FMEAAKFASHWLPFCREHNMMERSPEVYFASTYHSWSPEIEKIKMMYEIMKVKVKHIV DKGEISDEYIVDNEYREVFRKWTDGFTRMDHPAVVQVILDKSKDKDISGNFLPNLIYV SRQKSKTSPHHFKAGALNVLLRVSAVMTNAPLILTQDCDMYSNDPQTPLRVLCYLSDP ALQSKLAYIQFPQRFHGLNQTDIYASEYKRLFQINPMGFNGLMGPNYVGSGCFFCRRA FFGGPSTLVPPKIPELSPDHVVDKPINSQKILSLAHNVAGCDYENQTEHWGSKNGFRY GSLVEDFYTGYRLQSEGWKSLFCHPERAAFLGDVPITFLDLLSQCKRWCIGLLEVTFS KYNTLIFGSRSMGIMMGLAYSHYAFWPIWCIPITLYSFLPQLALLNKVSIFPKVSEPW CFLYVFLFLGAYGQDFLDFVLAGGTVRRWWNAQRMWMIRGLSCFLLSSVEYLLKSLGI STHSFSLTSKVLDDEQSKRYDQSIFEFGVPSPLFVPLTMAAIINLFSFAWGLTEFWDN GSNKEGLALQMVLAGFIVLNCLPIYGAIALRSDKGKMPTQITVISTFLSVALYIFAYL ILKQ" mobile_element 33176890..33177102 /note="source:INTACT639F_F363_scaffold_5-int 7460 7669" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33177098..33177595) /note="source:CACAO_on_E683_scaffold_9 1319 1827" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 33177630..33183303 /locus_tag="TCM_016505" /note="dbxref CacaoGD:Thecc1EG016505" mRNA join(33177630..33178840,33180092..33180177, 33182860..33183303) /locus_tag="TCM_016505" /product="Cellulose synthase protein G1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016504t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14220.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS join(33178214..33178840,33180092..33180177, 33182860..33183169) /locus_tag="TCM_016505" /note="paralog of Thecc1EG016504t1" /codon_start=1 /product="Cellulose synthase protein G1" /protein_id="EOY25085.1" /db_xref="Phytozome:POPTR_0003s14220.1" /db_xref="TAIR:AT4G24010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q570S7" /translation="MEALGRRGHYTSALAPTDAPHPFHTVEHLRHMVVNRVFVAVYTC AILALLYRHVRTLFLHSTTLISFFITLSLLFSDLVLAFMWGASQAFRMYPIRHKQIPE NLKKSVKEQDFSGLDVFICTADPHKEPLMSVVNMALLLMAYDYPMEKISIYVSDDGGS PLTLFAFMEAAKFASHWLPFCRENNIMDRNPDVYFASGHSGSSKAENIKDQEGIQVFL LPVCIVMVKTDYQSVLYSPLPPKCAAYGRKGKVCSFGNHATSFKNPHSNYISYLSFLS SLFSFLFSLYKPVTSSFPLKASIFPFKLSTLHRRTPKNRPLSLRRPNCTRSPHRPLPK SALPLR" gene 33179572..33188130 /locus_tag="TCM_016506" /note="dbxref CacaoGD:Thecc1EG016506" mRNA join(33179572..33179591,33182860..33183438, 33183540..33184279,33185609..33185758,33185884..33186009, 33186114..33186560,33186652..33186999,33187096..33188130) /locus_tag="TCM_016506" /product="Cellulose synthase like G3, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016503t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14220.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11391t4" mobile_element complement(33180678..33182116) /note="source:INTACT405F_F91_scaffold_4-int 16622 18093" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33183203..33183270) /note="source:CACAO_Mutator_E1149_scaffold_5 4446 4662" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(33183271..33183418) /note="source:INTACT473_F7_scaffold_3-int 6567 6711" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(33183668..33184279,33185609..33185758, 33185884..33186009,33186114..33186560,33186652..33186999, 33187096..33187647) /locus_tag="TCM_016506" /note="paralog of Thecc1EG016503t1" /codon_start=1 /product="Cellulose synthase like G3, putative" /protein_id="EOY25086.1" /db_xref="Phytozome:POPTR_0003s14220.1" /db_xref="TAIR:AT4G23990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVN5" /translation="MGGRGLIAGRTAHAPPLHKFEPLRRTALNRLFAVVYASAIIALL YRHAQTLIYSATSLLSFSLSLSLLISDLVLAFMWTGAQAFRVCPIRRKEFPENLRKII KEEDFPGLDVFICTADPYKEPPMNVVNTALSLMAYDYPTEKISVYVSDDGGSAFTLFA FMEAAKFASHWLPFCREHNMMERSPEVYFASTYHSWSPEIEKIKVMYKTMKVKVERIV DKGEISDEYIVDNEYREAFSKWTDGFTHMDHPAVVQVILDKSKDRDVSGNFLPNLIYV SRQKSKTSPHHFKAGALNVLLRVSAVMTNAPLILTQDCDMYSNDPQTPLRVLCYLSDP AFQSKLAYIQFPQRFRGLNQTDIYASEYKRMFQINPMGFDGLMGPDNFGSGCFFRRRA FFGGPSTLVPPEIPELSPNHVVDKPINSQEIFSLAHNVAGCDYENQTEHWGSKNGFRY GSLVEDFYTGYRLQCEGWKSLFCHPERAAFLGDVPITLLNLLSQCKRWCIGLLEVTFS KYNTLTFGSRSMGLLMGLAYSHYGFWPILCIPITLYSFLPQLTLLNKVSIFPKVSEPW CFLYVFLFLGAYGQDFLDFVLAGGTIRMWWNAQRMWMIRGLSCFLFGSVEYLLKSLGI STYGFSLTSKVLDDEQSKRYSQGIFEFGVPSPLFVPLTMAAIINLFSFAWGLTEFWDN GSNKEGLVLQMVLAGFIVLNCLPIYGAIALRSDKGKMPTQITIISTFLSVALYIFVYL ILKQ" mobile_element 33188048..33189018 /note="source:INTACT639F_F363_scaffold_5-int 7461 8459" /mobile_element_type="retrotransposon:LTR/Copia" gene 33189957..33193729 /locus_tag="TCM_016507" /note="dbxref CacaoGD:Thecc1EG016507" mRNA join(33189957..33190422,33191367..33191516, 33191590..33191715,33191810..33191972,33192052..33192242, 33192349..33192509,33192634..33192691,33192839..33193729) /locus_tag="TCM_016507" /product="Cellulose synthase like G3, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016506t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14220.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(33190216..33190422,33191367..33191516, 33191590..33191715,33191810..33191972,33192052..33192242, 33192349..33192509,33192634..33192691,33192839..33193381) /locus_tag="TCM_016507" /note="paralog of Thecc1EG016506t1" /codon_start=1 /product="Cellulose synthase like G3, putative" /protein_id="EOY25087.1" /db_xref="Phytozome:POPTR_0003s14220.1" /db_xref="TAIR:AT4G23990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HU42" /translation="MAYDYPTEKISIYVSDDEGSALTLFAFMEATKFASYWLPFTREN NIMDRNPDVYFASGHSCISEAKNIKEIYENMKVRVENVVNRGEVSEIYISNDEEREAF NKWTGGFTPQDHPTVIQVLLDSSKDKDITAHFLPNLIFVPRQKSKTSPHHFKAGALNV LLRVSTVMTNAPIILTQDCDMYSNDPQTPLRVLCYLCDPAIEPNLGFIQFPQRFPGDH IIVGLEPSSVGEHPSAPVKTEILELSPDHVVNKPIKYLDILPLAHHVASCNYENQTKW GSKMRFGYGSLVEDFYTGYRLQCDGWRSICCNPERAAFLGNIPINLVDVLGQCNVGPD HLCLPQLALPNGVSVFPEISEPWFFLYLLLLLGAYGQDFLEYVLEGATFRKWWNAQRM WMIRKLWSFSLGAAEYFLKSIGLSTYGFIVINKAVDDEQNKRYCQGMFEFGVPSPLFV PPTMAAIINLFSFIWGTILVISGSTEKGLLLQMLLAGCVVNCFPIYEAMALRSDKGKM PAKITIIATFLAGALYTATSIILK" gene complement(33194020..33196122) /locus_tag="TCM_016508" /note="dbxref CacaoGD:Thecc1EG016508" mRNA complement(join(33194020..33194438,33194856..33195365, 33195452..33195673,33196011..33196122)) /locus_tag="TCM_016508" /product="Translation elongation factor EF1B/ribosomal protein S6 family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019593001" /inference="similar to AA sequence:ricco:30068.m002521" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11407t1" CDS complement(join(33194199..33194438,33194856..33195365, 33195452..33195673,33196011..33196052)) /locus_tag="TCM_016508" /note="dbxref ricco:30068.m002521" /codon_start=1 /product="Translation elongation factor EF1B/ribosomal protein S6 family protein" /protein_id="EOY25088.1" /db_xref="TAIR:AT1G64510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYN6" /translation="MPMNRFNISYLISEVSIVLISHGNVSWFALDGGAIKLSFGTPTV SLSWLGKKQERGGKTGHQRVEQMLPLTCSRRREAMGCWKIHYPTGRSQSTTPCPNVCD EPTLLIRALFILSLITETPAELTSDREPMASPTSSLTKSPFCPQHLTQFPPLPFLSFT HSLKPIPKKSKSLTSLKRGNFTTVTVKARTLDFSGSFFEGGFGSDDDPPSQPGSGITA LEDKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVV PLAYSIKKKNKAGETNTYLDGIYLLFTYFMKPESMATLEVALNTDDDVIRSSSFKVRK RKF" gene 33195515..33199459 /locus_tag="TCM_016509" /note="dbxref CacaoGD:Thecc1EG016509" mRNA join(33195515..33195717,33196634..33196702, 33196884..33197000,33197179..33197261,33197346..33197496, 33197662..33197761,33197906..33198001,33198088..33198130, 33198230..33198318,33198414..33198511,33198693..33199459) /locus_tag="TCM_016509" /product="ABL interactor-like protein 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015431t2" /inference="similar to AA sequence:ricco:30068.m002523" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10415t00001" CDS join(33195637..33195717,33196634..33196702, 33196884..33197000,33197179..33197261,33197346..33197496, 33197662..33197761,33197906..33198001,33198088..33198130, 33198230..33198318,33198414..33198511,33198693..33198863) /locus_tag="TCM_016509" /note="dbxref ricco:30068.m002523; paralog of Thecc1EG015431t2" /codon_start=1 /product="ABL interactor-like protein 2, putative" /protein_id="EOY25089.1" /db_xref="TAIR:AT5G24310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H798" /translation="MRRFHGRSRLCLPSTTSKICINELHRKRGDLEREDLEFAVPFFL RTRENQVSTLEENMTSTTSVSVPQESSHRDELLMQQSLLFSDTLKDLKSLRKQLYSAA EHFELAYSKEEQKQIVEETLKDYAIKALVNTVDHLGSVAYKVNNFWDEKMGGICGMQL RLSCLEQRLRTCQEFVSLGGISQQSLVLEASEHHKRYIFPVEDTLNDFAQTSLKSHPT SMCARLDLHQFKKMGIQAIAAETPSECIGDEFFVLRSPQPLSRQRPLLFTSKSMNQRA ENPSTSPRYFPLPRSGSLMQRSTSPNHRNDKRRYPSEPRRTISSSTLGERERAKDMEQ YSSKSKRLFKAMLSLRKPKKDATLYKFLDEN" gene 33199766..33211069 /locus_tag="TCM_016510" /note="dbxref CacaoGD:Thecc1EG016510" mRNA join(33199766..33200345,33206152..33206930, 33207712..33208283,33208484..33208531,33208650..33209583, 33209730..33211069) /locus_tag="TCM_016510" /product="Transcription factor, putative" /inference="alignment:exonerate- protein:2:ricco:30068.m002527" /inference="similar to AA sequence:ricco:30068.m002527" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc44t8" mobile_element complement(33203741..33204950) /note="source:scaffold_5_CACTA_0614 1438 2644" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33205836..33205982 /note="source:scaffold_8_CACTA_0855 3141 3288" /mobile_element_type="transposon:TIR/CACTA" CDS join(33206681..33206930,33207712..33208283, 33208484..33208531,33208650..33209583,33209730..33210880) /locus_tag="TCM_016510" /note="dbxref ricco:30068.m002527" /codon_start=1 /product="Transcription factor, putative" /protein_id="EOY25090.1" /db_xref="TAIR:AT4G24020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYP2" /translation="MCEPEEDNACPSPPKQQQQLQGIMDLDDLDLESSWPLDQPTFLS NPTSPLIISSSSEQPCSPLWAFSDEDKVGSAAGYNLFLTCTPKPVNENPKEDNDKRGI PSPFLGLLPLENPDSYCVIKERMTQALRYFKDSTEQHVLAQVWAPIKSGGRYVLTTSG QPFVLDPHSNGLHQYRMVSLMYMFSVDGESDGQLGLPGRVFRQKLPEWTPNVQYYSSK EYSRLDHALHYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKVCKALEAV NLKSSDILDPPSTQICNENRQNALAKILEILTVVCETYKLPLAQTWVPCRHRSVLAYG GGLKKSCTSFDGSCMGQVCMSTTDVAFYVVDAHMWGFREACLEHHLQKGQGVAGRAFL SRNSCFCTDITQFCKTEYPLVHYARMFRLTSCFAICLRSTYTGDDDYVLEFFLPPAIA DSNEQQTLLRSILATMKQHFQSLKVASGAELEDDEGSIEIIEASSDERLDSRLESIPI PPSVKSPPGPNTSPNRGELQLDSSKQQLIVTFDPATDGGNVVASGSQNPVCLPQNKDV KKSERKRGKTEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKI NKVNRSLTKLKHVIESVQGADGAFGLTSIATSPLPVAVGSISWPTSLNGSNQQNSPNS KPSDPQGEKYDLPTCRTPVSNGQALVEDQLLGGMTLSQEELFLQQNALSPDLNKGANR SKTGSGSREESAGTPTSHGSCQGSPAIESAATKDPLSSIQEQCFKARGSPELAFQPIG ELNIPATFSMPEALVATEPQEPFGGMLVEDAGSSKDLRNLCPSVADVGIDERFPESSW TPPPCTDLALMQAMATFTQTTPHATARQEMRSLTIKATYREDIIRFRISLSSGIVELK EEVAKRLKLEVGTFDIKYLDDDSEMVLIACDADLQECLDVSRSSGSNIIRLSVHDAMA NLGSSCESTGEL" gene complement(33211173..33215943) /locus_tag="TCM_016511" /note="dbxref CacaoGD:Thecc1EG016511" mRNA complement(join(33211173..33211743,33211928..33213484, 33215332..33215453,33215560..33215943)) /locus_tag="TCM_016511" /product="Cyclin-dependent kinase E,1 isoform 2" /inference="similar to AA sequence:ricco:30068.m002525" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b015956t1a2" mRNA complement(join(33211173..33213484,33215332..33215453, 33215560..33215943)) /locus_tag="TCM_016511" /product="Cyclin-dependent kinase E,1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002525" /inference="similar to AA sequence:ricco:30068.m002525" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11471t3" CDS complement(join(33211521..33211743,33211928..33213369)) /locus_tag="TCM_016511" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002525" /codon_start=1 /product="Cyclin-dependent kinase E,1 isoform 2" /protein_id="EOY25092.1" /db_xref="TAIR:AT5G63610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84TI6" /translation="MGDGNNTSGRGIAANSTTSSSNSEKPEWLQQYNLLGKIGEGTYG LVFLARIKSQTNRGKCIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHI NHADMSLYLAFDYAEYDLYEIIRHHRDKVNHAINQYTVKSLLWQLLNGLNYLHSNWII HRDLKPSNILVMGDGDEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLG AKHYTSAVDMWAVGCIFAELLTLKPLFQGAEAKSTPNPFQLDQLDKIFKILGHPTLEK WPTLGNLPHWQSDLQHIQGHKYDNAGLHSVVHLSPRSPAFDLLSKMLEYDPRNRITAA QALEHEYFRIDPLPGRNALVPSQPGEKIVNYPTRPVDQNTDFEGTTSIQQSQPVSSGN AVAGNMGGAHAGRNGSVNRPMPAPMQRMPQGMMAYNFPAQAGVAGGMNPGGIPMPRNI ATQAHQQQQLRRKDPGMNMPGYPPQQKSRRIHDLQDCELPQVRNVSSKYQCWITWLFL FDEYYQSCNYLCVAIFCLRTQGSGAGVESVDASEGSKTQCYGSQAL" CDS complement(33211924..33213369) /locus_tag="TCM_016511" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002525" /codon_start=1 /product="Cyclin-dependent kinase E,1 isoform 1" /protein_id="EOY25091.1" /db_xref="TAIR:AT5G63610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84TI6" /translation="MGDGNNTSGRGIAANSTTSSSNSEKPEWLQQYNLLGKIGEGTYG LVFLARIKSQTNRGKCIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHI NHADMSLYLAFDYAEYDLYEIIRHHRDKVNHAINQYTVKSLLWQLLNGLNYLHSNWII HRDLKPSNILVMGDGDEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLG AKHYTSAVDMWAVGCIFAELLTLKPLFQGAEAKSTPNPFQLDQLDKIFKILGHPTLEK WPTLGNLPHWQSDLQHIQGHKYDNAGLHSVVHLSPRSPAFDLLSKMLEYDPRNRITAA QALEHEYFRIDPLPGRNALVPSQPGEKIVNYPTRPVDQNTDFEGTTSIQQSQPVSSGN AVAGNMGGAHAGRNGSVNRPMPAPMQRMPQGMMAYNFPAQAGVAGGMNPGGIPMPRNI ATQAHQQQQLRRKDPGMNMPGYPPQQKSRRM" gene complement(33216765..33219202) /locus_tag="TCM_016513" /note="dbxref CacaoGD:Thecc1EG016513" mRNA complement(join(33216765..33217158,33217724..33217843, 33218151..33218532,33218879..33218918,33219032..33219202)) /locus_tag="TCM_016513" /product="Nodulin MtN3 family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002528" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012041t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019601001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11429t1; inference alignment:Newbler:10:TSA:cgbaB_g02694t00001" mRNA complement(join(33216772..33217158,33217724..33217843, 33218151..33218532,33218879..33218915,33219032..33219171)) /locus_tag="TCM_016513" /product="Nodulin MtN3 family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002528" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012041t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019601001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02694t00001; inference alignment:Newbler:10:TSA:cgbaB_g02694t00001" mobile_element complement(33216909..33216965) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5675 5726" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(33216979..33217158,33217724..33217843, 33218151..33218532,33218879..33218915,33219032..33219080)) /locus_tag="TCM_016513" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012041t1" /codon_start=1 /product="Nodulin MtN3 family protein isoform 1" /protein_id="EOY25093.1" /db_xref="Phytozome:GSVIVT01019601001" /db_xref="TAIR:AT4G10850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LBF7" /translation="MVSHLVNTIRNVVGITGNVISLFLFLSPVPTFVRIWKKGSVEQF SPTPYLATLINCMVWVIYGLPMVHPNSTLVMTINGTGTAIEFAYISLFLIFCPDKKKG LKVLLIVLVELIFIALVTTLVLTLVHTTERRSMVVGIIAVLFNITMYASPLSVMRLVI STKSVEYMPFFLSLASFGNGVIWTTYAFLPFDPFIAVPNGLGTLFSLAQLLLYAIYYK STKRIIATRKETKMELNLSEVVVVSGDIDHKKTGGVP" CDS complement(join(33216979..33217158,33217724..33217843, 33218151..33218532,33218879..33218918,33219032..33219080)) /locus_tag="TCM_016513" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012041t1" /codon_start=1 /product="Nodulin MtN3 family protein, putative isoform 2" /protein_id="EOY25094.1" /db_xref="Phytozome:GSVIVT01019601001" /db_xref="TAIR:AT4G10850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LBF7" /translation="MVSHLVNTIRNVVGITAGNVISLFLFLSPVPTFVRIWKKGSVEQ FSPTPYLATLINCMVWVIYGLPMVHPNSTLVMTINGTGTAIEFAYISLFLIFCPDKKK GLKVLLIVLVELIFIALVTTLVLTLVHTTERRSMVVGIIAVLFNITMYASPLSVMRLV ISTKSVEYMPFFLSLASFGNGVIWTTYAFLPFDPFIAVPNGLGTLFSLAQLLLYAIYY KSTKRIIATRKETKMELNLSEVVVVSGDIDHKKTGGVP" gene complement(33222955..33226721) /locus_tag="TCM_016514" /note="dbxref CacaoGD:Thecc1EG016514" mRNA complement(join(33222955..33224043,33224441..33225349, 33226048..33226721)) /locus_tag="TCM_016514" /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT4G10840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005119t1" /inference="similar to AA sequence:ricco:30068.m002529" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09330t00001" CDS complement(join(33223809..33224043,33224441..33225349, 33226048..33226670)) /locus_tag="TCM_016514" /note="dbxref ricco:30068.m002529; paralog of Thecc1EG005119t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="EOY25095.1" /db_xref="TAIR:AT4G10840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81629" /translation="MPGLVSVKSPPDAPPLRISVPDQAPPHNPPRTPNKRVPSPSPSR SKPSPARSAKKPPPESPNPDDSSLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRAA KSFERCAVEGEPSLDLAMSLHVLAAIYCSLGRFDEAVPVLERAIQVPDVDRGPDHALA AFSGHMQLGDTYSMLGQVEKSIGCYEEGLKIQIQALGETDARVGETCRYLAEAHVQAM QFDKAEELCKKTLEIHRAHSEPASLEEAADRRLMALVCEAKGDYEAALEHLVLASMAM IANGQENEVAAIDVSIGNIYMSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRL ADLYHRTGKLRESKSYCENALRIFAKPVPGTTAEEIAGGLTEISAIYESVDEPEEALK LLQKAMKLLEDKPGQQSTIAGIEARMGVMFYILGRYEEARNSFESAVAKLRASGERKS AFFGVMLNQMGLACVQLFKIDEAADLFEEARAILEQECGPCHQDTLGVYSNLAATYDA MGRVEDAIEILEYVLKLREEKLGIANPDFEDEKSRLAELLKEAGRSRNRKAKSLENLI APSSRRTKKEGTKRWPGLGFRI" gene complement(33227498..33235891) /locus_tag="TCM_016515" /note="dbxref CacaoGD:Thecc1EG016515" mRNA complement(join(33227498..33228306,33228479..33228534, 33228630..33228713,33232301..33233057,33233188..33233331, 33233449..33233659,33234915..33235891)) /locus_tag="TCM_016515" /product="Beta-amylase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11000.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021054t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11000.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11437t2" CDS complement(join(33228172..33228306,33228479..33228534, 33228630..33228713,33232301..33233057,33233188..33233331, 33233449..33233659,33234915..33235438)) /locus_tag="TCM_016515" /note="paralog of Thecc1EG021054t1" /codon_start=1 /product="Beta-amylase 1" /protein_id="EOY25096.1" /db_xref="Phytozome:POPTR_0001s11000.1" /db_xref="TAIR:AT3G23920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL19" /translation="MAVASPSAPSFSVSFRCRGAAESCISNRLTWFPSVAFTRRHHRQ SLPCVKRLSIASSLNSSRSSQDGDVQYEFQQRGWQEGSPVYVKLPMDAVGPTVGQLWN AKTMSYSLHALADAGVEGVVLEIWWGLVERYAPGVYNWHGYKELVELAMRSGLKVRVV MAFHQCGTGPDDPHWISLPRWVLEEIQKNPDLAYADKFGRRNMEYISLGCDTLPVLRG RSPLQAYADFMRNFRDTFGHFIGFIITGIQVGMGPSGELRYPLCKFELRYPSCTSEKL TWSWHSHELGEFQCYDKYMLASLNACAKDIGMPEWGNGGPFGASNLIQNPENTDFFGS DNGSWNTPYGKFFLEWYSGMLLWHGEIICREAESIFQGTEVNKSAKVAAIYWHYDTQS HPSELTAGYYNTSTRDGYLPIARMFARYGFTLCCTGFERQDAEEKKRNPVSSPEGFLR QLLLAAKVCDVPLEGENYATTFDDESFQQVLKMLKFYSYGLEKYSLSFNFERMDKNLF DNRNWIRFVRFVKQMSDANTFRANLGIEDDVHWSSTSALPAASSMGPYAKTMILLLLL VYLDPFIGRVKAMEHVATSANSATNEGMNQVKMRKLTLEVDIQKDYNPIPNPKHEPPP RGKSGAPAGGGN" gene 33237606..33241739 /locus_tag="TCM_016516" /note="dbxref CacaoGD:Thecc1EG016516" mRNA join(33237606..33238085,33238652..33238919, 33239009..33239223,33239322..33239564,33239647..33240126, 33240248..33240402,33240511..33240593,33240686..33241739) /locus_tag="TCM_016516" /product="Heat shock protein 70 (Hsp 70) family protein" /inference="alignment:exonerate- protein:2:ricco:30068.m002531" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026644t1" /inference="similar to AA sequence:ricco:30068.m002531" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09731t00001" CDS join(33238028..33238085,33238652..33238919, 33239009..33239223,33239322..33239564,33239647..33240126, 33240248..33240402,33240511..33240593,33240686..33241181) /locus_tag="TCM_016516" /note="dbxref ricco:30068.m002531; paralog of Thecc1EG026644t1" /codon_start=1 /product="Heat shock protein 70 (Hsp 70) family protein" /protein_id="EOY25097.1" /db_xref="TAIR:AT5G42020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K007" /translation="MAGSWRASGSLVVLAIVLSGCLFAISIAKEEATKLGTVIGIDLG TTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDNERLIGEAAKNQAAVNAERTIFDV KRLIGRKFEDKEVQKDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMVLTKM KETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGL DKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDHRIMEYFIKL IKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARF EELNNDLFRKTMGPVKKAMEDAGLEKRQIDEIVLVGGSTRIPKVQQLLKDYFEGKEPN KGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNT VIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGIPPAPRGTPQIEV TFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKE KIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKVETAVKEALEWLDDNQSAEKED YEEKLKEVEAVCNPIITAVYQRSGGAPGGESTEEDDSHDEL" gene complement(33241797..33247981) /locus_tag="TCM_016517" /note="dbxref CacaoGD:Thecc1EG016517" mRNA complement(join(33241797..33242507,33242602..33242730, 33243162..33243257,33243390..33243557,33243689..33243865, 33244116..33244254,33244890..33245025,33245202..33245370, 33245467..33245601,33245959..33246062,33246291..33246514, 33246793..33247098,33247449..33247657,33247742..33247981)) /locus_tag="TCM_016517" /product="Carbon-nitrogen hydrolase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14370.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11020.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11451t2" mRNA complement(join(33242175..33242507,33242602..33242730, 33243162..33243257,33243390..33243557,33244116..33244254, 33244890..33245025,33245202..33245370,33245467..33245601, 33245959..33246062,33246291..33246514,33246793..33247098, 33247449..33247657,33247742..33247855)) /locus_tag="TCM_016517" /product="Carbon-nitrogen hydrolase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14370.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400021438" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc773t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11451t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc777t7" mRNA complement(join(33242175..33242507,33242602..33242730, 33243162..33243257,33243390..33243557,33244116..33244254, 33244890..33245025,33245202..33245370,33245467..33245601, 33245959..33246062,33246291..33246514,33246793..33247098, 33247449..33247735)) /locus_tag="TCM_016517" /product="Carbon-nitrogen hydrolase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14370.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400021438" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc773t2; alternateUTRof:Thecc1EG016517t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11451t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc777t7" CDS complement(join(33242286..33242507,33242602..33242730, 33243162..33243257,33243390..33243557,33244116..33244254, 33244890..33245025,33245202..33245370,33245467..33245601, 33245959..33246062,33246291..33246514,33246793..33247098, 33247449..33247642)) /locus_tag="TCM_016517" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Carbon-nitrogen hydrolase family protein isoform 2" /protein_id="EOY25099.1" /db_xref="Phytozome:PGSC0003DMP400021438" /db_xref="TAIR:AT1G55090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYQ0" /translation="MRLLKVATCNLNQWAMDFDCNLKHIKESISRAKEAGAVIRLGPE LEITGYGCEDHFLELDTVNHAWECLKEILLGDWTDGILCSIGMPIIKGSERYNCQVFC FNRKIVMIRPKMWLANDGNYRELRWFTTWKQEDQLVEFQIPPEISEALSQKSVPFGYG YIQFLDTAVAAEICEELFTPIPPHAELALNGVEVFLNASGSHHQLRKLDLRLRAFIGA THTRGGVYMYSNHQGCDGGRLYYDGCCCVVVNGEVVAQGSQFSLKDIEVVVAQVDLDA VASLRGSISSFQEQASCKNRVSSVTVPYNICRPFDLKMLLSSPQKIMYHSPEEEIAFG PGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIR IGNYTDGQFPTDSKEFAKRIFYTVYMGSENSSEATKMRAKVLADEIGSWHLDVCIDGV VSSLLSLFQTLTGKRPHYKYDCSAADINPIGSISKQDLRIFLRWAANHLGYSSLAEIE AAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKIFRCGPVSMFKNLCYKWGAS LTPSEVADKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQF RKIDELVQELDGDKVAFKESGEHGKLGDTSGVGGMGVVAAASGDPKAGL" CDS complement(join(33242286..33242507,33242602..33242730, 33243162..33243257,33243390..33243557,33244116..33244254, 33244890..33245025,33245202..33245370,33245467..33245601, 33245959..33246062,33246291..33246514,33246793..33247098, 33247449..33247642)) /locus_tag="TCM_016517" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Carbon-nitrogen hydrolase family protein isoform 2" /protein_id="EOY25100.1" /db_xref="Phytozome:PGSC0003DMP400021438" /db_xref="TAIR:AT1G55090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYQ0" /translation="MRLLKVATCNLNQWAMDFDCNLKHIKESISRAKEAGAVIRLGPE LEITGYGCEDHFLELDTVNHAWECLKEILLGDWTDGILCSIGMPIIKGSERYNCQVFC FNRKIVMIRPKMWLANDGNYRELRWFTTWKQEDQLVEFQIPPEISEALSQKSVPFGYG YIQFLDTAVAAEICEELFTPIPPHAELALNGVEVFLNASGSHHQLRKLDLRLRAFIGA THTRGGVYMYSNHQGCDGGRLYYDGCCCVVVNGEVVAQGSQFSLKDIEVVVAQVDLDA VASLRGSISSFQEQASCKNRVSSVTVPYNICRPFDLKMLLSSPQKIMYHSPEEEIAFG PGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIR IGNYTDGQFPTDSKEFAKRIFYTVYMGSENSSEATKMRAKVLADEIGSWHLDVCIDGV VSSLLSLFQTLTGKRPHYKYDCSAADINPIGSISKQDLRIFLRWAANHLGYSSLAEIE AAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKIFRCGPVSMFKNLCYKWGAS LTPSEVADKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQF RKIDELVQELDGDKVAFKESGEHGKLGDTSGVGGMGVVAAASGDPKAGL" CDS complement(join(33242286..33242507,33242602..33242730, 33243162..33243257,33243390..33243557,33243689..33243865, 33244116..33244254,33244890..33245025,33245202..33245370, 33245467..33245601,33245959..33246062,33246291..33246514, 33246793..33247098,33247449..33247642)) /locus_tag="TCM_016517" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Carbon-nitrogen hydrolase family protein isoform 1" /protein_id="EOY25098.1" /db_xref="Phytozome:POPTR_0001s11020.1" /db_xref="TAIR:AT1G55090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYQ0" /translation="MRLLKVATCNLNQWAMDFDCNLKHIKESISRAKEAGAVIRLGPE LEITGYGCEDHFLELDTVNHAWECLKEILLGDWTDGILCSIGMPIIKGSERYNCQVFC FNRKIVMIRPKMWLANDGNYRELRWFTTWKQEDQLVEFQIPPEISEALSQKSVPFGYG YIQFLDTAVAAEICEELFTPIPPHAELALNGVEVFLNASGSHHQLRKLDLRLRAFIGA THTRGGVYMYSNHQGCDGGRLYYDGCCCVVVNGEVVAQGSQFSLKDIEVVVAQVDLDA VASLRGSISSFQEQASCKNRVSSVTVPYNICRPFDLKMLLSSPQKIMYHSPEEEIAFG PGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIR IGNYTDGQFPTDSKEFAKRIFYTVYMGSENSSEATKMRAKVLADEIGSWHLDVCIDGV VSSLLSLFQTLTGKRPHYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKKG FYLVLGSSNVDEALRGYLTKYDCSAADINPIGSISKQDLRIFLRWAANHLGYSSLAEI EAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKIFRCGPVSMFKNLCYKWGA SLTPSEVADKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQ FRKIDELVQELDGDKVAFKESGEHGKLGDTSGVGGMGVVAAASGDPKAGL" mRNA complement(join(<33243531..33243557,33243689..33243865, 33244116..33244254,33244890..33245025,33245202..33245370, 33245467..33245601,33245959..33246062,33246291..33246514, 33246793..33247098,33247449..33247746)) /locus_tag="TCM_016517" /product="Carbon-nitrogen hydrolase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14370.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11020.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc777t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc777t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11451t2" CDS complement(join(<33243531..33243557,33243689..33243865, 33244116..33244254,33244890..33245025,33245202..33245370, 33245467..33245601,33245959..33246062,33246291..33246514, 33246793..33247098,33247449..33247642)) /locus_tag="TCM_016517" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Carbon-nitrogen hydrolase family protein isoform 4" /protein_id="EOY25101.1" /db_xref="Phytozome:POPTR_0001s11020.1" /db_xref="TAIR:AT1G55090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RYQ0" /translation="MRLLKVATCNLNQWAMDFDCNLKHIKESISRAKEAGAVIRLGPE LEITGYGCEDHFLELDTVNHAWECLKEILLGDWTDGILCSIGMPIIKGSERYNCQVFC FNRKIVMIRPKMWLANDGNYRELRWFTTWKQEDQLVEFQIPPEISEALSQKSVPFGYG YIQFLDTAVAAEICEELFTPIPPHAELALNGVEVFLNASGSHHQLRKLDLRLRAFIGA THTRGGVYMYSNHQGCDGGRLYYDGCCCVVVNGEVVAQGSQFSLKDIEVVVAQVDLDA VASLRGSISSFQEQASCKNRVSSVTVPYNICRPFDLKMLLSSPQKIMYHSPEEEIAFG PGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIR IGNYTDGQFPTDSKEFAKRIFYTVYMGSENSSEATKMRAKVLADEIGSWHLDVCIDGV VSSLLSLFQTLTGKRPHYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKKG FYLVLGSSNVDEALRGYLTKYDCSAADIN" gene 33248035..33255368 /locus_tag="TCM_016518" /note="dbxref CacaoGD:Thecc1EG016518" mRNA join(33248035..33248413,33248572..33248784, 33248967..33249153,33249334..33249542,33249658..33249819, 33250267..33250395,33250478..33250579,33250714..33250860, 33251394..33251456,33251573..33251619,33251730..33251789, 33252037..33252119,33252512..33252606,33253630..33253716, 33253893..33253980,33254262..33254347,33254496..33254558, 33254682..33255368) /locus_tag="TCM_016518" /product="General control non-repressible 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11030.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11030.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10292t2" mRNA join(33248076..33248413,33248572..33248784, 33248967..33249153,33249334..33249542,33249658..33249819, 33250267..33250395,33250478..33250579,33250714..33250860, 33251394..33251456,33251573..33251619,33251730..33251789, 33252037..33252119,33252512..33252606,33253630..33253716, 33253893..33253980,33254262..33254347,33254496..33254558, 33254682..33254878,33255023..33255181) /locus_tag="TCM_016518" /product="General control non-repressible 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11030.1" /inference="alignment:exonerate- protein:2:ricco:30068.m002538" /inference="similar to AA sequence:Phytozome:POPTR_0001s11030.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04379t00001; alternateUTRof:Thecc1EG016518t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10292t2" CDS join(33248210..33248413,33248572..33248784, 33248967..33249153,33249334..33249542,33249658..33249819, 33250267..33250395,33250478..33250579,33250714..33250860, 33251394..33251456,33251573..33251619,33251730..33251789, 33252037..33252119,33252512..33252606,33253630..33253716, 33253893..33253980,33254262..33254347,33254496..33254558, 33254682..33254807) /locus_tag="TCM_016518" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="General control non-repressible 3 isoform 1" /protein_id="EOY25102.1" /db_xref="Phytozome:POPTR_0001s11030.1" /db_xref="TAIR:AT1G64550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0V6" /translation="MTEVASSVVHEVLGRRAEDVDQPIIDYIINVLADEDFDFGEDGD GAFESIGELLVAAECVSDFSECRQVCSKLSEKFGKHGLVKPKPTVRSLATPFRMNEGM EEEAPKKKPEPVDGPLLSERDKMKIERRKRKEERQREAQYQMHLAEMEAAREGMPVVC VNHDTGGPAIRDIHMENFTVSVGGRDLIVDGSVTLSFGRHYGLVGRNGTGKTTFLRYM AMHAIDGIPPNCQILHVEQEVVGDDTTALQCVLNSDIERTQLLKEEAHLLAQQRELDL EEDENGKSKGDLNGVPDKDAISQRLEEIYKRLEAIDADSAESRAASILAGLSFSPEMQ QKATKTFSGGWRMRIALARALFIEPDMLLLDEPTNHLDLHAVLWLESYLVKWPKTFIV VSHAREFLNTVVTDIIHLQGQKLSAYKGDYDTFEKTRQEQVKNQQKAIEANERARSHM QAFIDKFRYNAKRASLVQSRIKALERMEHVDEIVNDPDYKFEFPTPDDRPGPPIISFS DASFGYPRGPTLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA KVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTL SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL ISGSVDELWVVSEGKVSPFHGTFQDYKKMLQSSS" CDS join(33248210..33248413,33248572..33248784, 33248967..33249153,33249334..33249542,33249658..33249819, 33250267..33250395,33250478..33250579,33250714..33250860, 33251394..33251456,33251573..33251619,33251730..33251789, 33252037..33252119,33252512..33252606,33253630..33253716, 33253893..33253980,33254262..33254347,33254496..33254558, 33254682..33254807) /locus_tag="TCM_016518" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="General control non-repressible 3 isoform 1" /protein_id="EOY25103.1" /db_xref="Phytozome:POPTR_0001s11030.1" /db_xref="TAIR:AT1G64550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0V6" /translation="MTEVASSVVHEVLGRRAEDVDQPIIDYIINVLADEDFDFGEDGD GAFESIGELLVAAECVSDFSECRQVCSKLSEKFGKHGLVKPKPTVRSLATPFRMNEGM EEEAPKKKPEPVDGPLLSERDKMKIERRKRKEERQREAQYQMHLAEMEAAREGMPVVC VNHDTGGPAIRDIHMENFTVSVGGRDLIVDGSVTLSFGRHYGLVGRNGTGKTTFLRYM AMHAIDGIPPNCQILHVEQEVVGDDTTALQCVLNSDIERTQLLKEEAHLLAQQRELDL EEDENGKSKGDLNGVPDKDAISQRLEEIYKRLEAIDADSAESRAASILAGLSFSPEMQ QKATKTFSGGWRMRIALARALFIEPDMLLLDEPTNHLDLHAVLWLESYLVKWPKTFIV VSHAREFLNTVVTDIIHLQGQKLSAYKGDYDTFEKTRQEQVKNQQKAIEANERARSHM QAFIDKFRYNAKRASLVQSRIKALERMEHVDEIVNDPDYKFEFPTPDDRPGPPIISFS DASFGYPRGPTLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA KVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTL SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL ISGSVDELWVVSEGKVSPFHGTFQDYKKMLQSSS" gene complement(33255319..33257281) /locus_tag="TCM_016519" /note="dbxref CacaoGD:Thecc1EG016519" mRNA complement(join(33255319..33256125,33256287..33256337, 33256500..33256694,33256807..33257281)) /locus_tag="TCM_016519" /product="Fiber protein Fb17" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016530t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00527t00001" CDS complement(join(33255451..33256125,33256287..33256337, 33256500..33256694,33256807..33256887)) /locus_tag="TCM_016519" /note="paralog of Thecc1EG016530t1" /codon_start=1 /product="Fiber protein Fb17" /protein_id="EOY25104.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6UA17" /translation="MVQSRALSPAQRSAKNERDRQRRRGLKLEFERLQNVAAKYQEMA PLLDELRVEVTTVRNVISQLAEESRRLNDVEPHLTRKIHQLDNIVRQNQTEQIERRQL LSQWQFKTQAMVLPTIGKEASNEPIDLGVESSRSDIWYTDEFLQDFIEKLDDKEKSRV DFLDFKGLPEELEKCGRFSLPPSLVPIHEILDKAYGDITAESNQSNPVIRDSYILFCS VIKEMNEVQLEQVDLDKMILWRDAINSGLSIGFRGNFAIEHLKKIARAYFGSKAWNDQ ELKSLEERMSELKAELYGLEQQHYSIIERQSSEMCRECLQDQQYFQGKPLSTGLFLS" gene 33258756..33262105 /locus_tag="TCM_016520" /note="dbxref CacaoGD:Thecc1EG016520" mRNA join(33258756..33259096,33259197..33259339, 33259516..33260254,33260380..33260424,33260635..33260661, 33260779..33262105) /locus_tag="TCM_016520" /product="Fiber protein Fb17" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016522t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc631t7" CDS join(33258953..33259096,33259197..33259339, 33259516..33260254,33260380..33260424,33260635..33260661, 33260779..33261504) /locus_tag="TCM_016520" /note="paralog of Thecc1EG016522t1" /codon_start=1 /product="Fiber protein Fb17" /protein_id="EOY25105.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6UA17" /translation="MEDFSAFAAFQADDSERTPDQRGSKRPLTEAQRIAKNERDRERR QEHKVEFERLQSVEFQFNQIAPQFKDLRTQLGIQTNIISKLKQENQRLKNRDLLVHGN QLQPVALIGGEINQMVWNTATVRPQAHLQLMPDLSISAAVQTQVIPAIPAESVIDKET VTNQFTMNVPFLFVASKTEEVTCIRLRGKCSASPEGDLLQYLFEWIPHQTNQESWENL GWSPSDVGLIQNMALSSHTSSSCGAEPCFPIKLLLWNSVGTLNTYGQMVVMDLINRFR PAVLVIAETKLSRARAKEIIDTFHFDAHRVTPNLGFVGGMWLLWRSDVVEVEVLSFTE QEIHALIKEPQTNQNPSPWEIFRDVNFDSLEEAQSFLVPSPTAQVANSEPVTEAQGSD PQTGNTKYADQLVEDFTKKLDAMDQSKVDFSDFEGLKEELDASGIGNLPPSLAPIDER IKMVYGDITADSRQSPCIVRPSYILLCSVIKEMDELTLDQVDEKKMLFWGDAINSGLR IGLRGSFAIDHLKNIARAYYGLKAWNEQGHDQKDLESIQCRMSELQIELRSLEEKHAK KLEERESEVRRQCIHVAEQFWGKPLSTYLFSQLFPGCNSAF" gene complement(33262406..33266529) /locus_tag="TCM_016521" /note="dbxref CacaoGD:Thecc1EG016521" mRNA complement(join(33262406..33262784,33262944..33263060, 33263160..33263294,33263466..33263588,33263758..33263880, 33264062..33264181,33264344..33264380,33264480..33264506, 33264637..33264687,33265412..33265534,33265665..33266264, 33266405..33266529)) /locus_tag="TCM_016521" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016534t4" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b015965t1a2; alternateUTRof:Thecc1EG016521t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12185t3" mRNA complement(join(33262406..33262784,33262944..33263060, 33263160..33263294,33263466..33263588,33263758..33263880, 33264062..33264181,33264344..33264380,33264480..33264506, 33264637..33264687,33265412..33265534,33265665..33266071, 33266207..33266264,33266405..33266441)) /locus_tag="TCM_016521" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016534t4" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12185t3" mRNA complement(join(33262443..33262784,33262944..33263060, 33263160..33263252,33263466..33263588,33263758..33263880, 33264062..33264181,33264343..33264382,33264480..33264506, 33264637..33264686,33265411..33265534,33265665..33266071, 33266207..33266264,33266405..33266529)) /locus_tag="TCM_016521" /product="Uncharacterized protein isoform 3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016534t1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12185t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12185t3" CDS complement(join(33262771..33262784,33262944..33263060, 33263160..33263294,33263466..33263588,33263758..33263880, 33264062..33264181,33264344..33264380,33264480..33264506, 33264637..33264687,33265412..33265534,33265665..33265832)) /locus_tag="TCM_016521" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016534t4" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25106.1" /translation="MVASSSAAKAAKTNNHKQTGSTAKTTDFKTKAKEPPTPAQRRAK QAVDKKYRANKKRRFEELEQENLRMGAELEEKNSEIIRITKENQELGRALERREAIVG QMKRIPCDWKVDGKNFTSFDEAETWFLSQTYDQGPNDTNNNTTASTAAGPSCVANHGL PNNPDNNPFSHDPAAGFPTARTAGSIFVEYPELASTFDAPYNPSISDLFTDHDLAAEF PTLSAAGSSFAAYPELASVFDALDSHDISDLSTDHDLAAEFPTSSAAGSSFIAGHDLP VMVDVPNNHDTISNLVTRDPAADYKSGFPIAFVAGSSVANYDLHAPKSYDISGLFTHD PAADKKAGLSF" CDS complement(join(33262771..33262784,33262944..33263060, 33263160..33263294,33263466..33263588,33263758..33263880, 33264062..33264181,33264344..33264380,33264480..33264506, 33264637..33264687,33265412..33265534,33265665..33265832)) /locus_tag="TCM_016521" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016534t4" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25107.1" /translation="MVASSSAAKAAKTNNHKQTGSTAKTTDFKTKAKEPPTPAQRRAK QAVDKKYRANKKRRFEELEQENLRMGAELEEKNSEIIRITKENQELGRALERREAIVG QMKRIPCDWKVDGKNFTSFDEAETWFLSQTYDQGPNDTNNNTTASTAAGPSCVANHGL PNNPDNNPFSHDPAAGFPTARTAGSIFVEYPELASTFDAPYNPSISDLFTDHDLAAEF PTLSAAGSSFAAYPELASVFDALDSHDISDLSTDHDLAAEFPTSSAAGSSFIAGHDLP VMVDVPNNHDTISNLVTRDPAADYKSGFPIAFVAGSSVANYDLHAPKSYDISGLFTHD PAADKKAGLSF" CDS complement(join(33262771..33262784,33262944..33263060, 33263160..33263252,33263466..33263588,33263758..33263880, 33264062..33264181,33264343..33264382,33264480..33264506, 33264637..33264686,33265411..33265534,33265665..33265832)) /locus_tag="TCM_016521" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG016534t1" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY25108.1" /translation="MVASSSAAKAAKTNNHKQTGSTAKTTDFKTKAKEPPTPAQRRAK QAVDKKYRANKKRRFEELEQENLRMGAELEEKNSEIIRITKENQELGRALERREAIVG QMKRIPCDWKVDGKNFTSFDERRKLGFCRRPMIKGPNDTNNNTTASTAAGPSCVANHG LPNNPDNNPFSHDPAAGFPTARTAGSIFVEYPELASTFDAPYNPSISDLFTDHDLAAE FPTLSAAGSSFAAYPELASVFDALDSHDISDLSTDHDLAAGHDLPVMVDVPNNHDTIS NLVTRDPAADYKSGFPIAFVAGSSVANYDLHAPKSYDISGLFTHDPAADKKAGLSF" gene complement(33268062..33271221) /locus_tag="TCM_016522" /note="dbxref CacaoGD:Thecc1EG016522" mRNA complement(join(33268062..33269234,33269329..33269355, 33269619..33269678,33269787..33270509,33270606..33270788, 33270892..33271221)) /locus_tag="TCM_016522" /product="Fiber protein Fb17" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016520t1" /note="quality class is strong, express is medium, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc887t4" CDS complement(join(33268554..33269234,33269329..33269355, 33269619..33269678,33269787..33270509,33270606..33270788, 33270892..33271035)) /locus_tag="TCM_016522" /note="paralog of Thecc1EG016520t1" /codon_start=1 /product="Fiber protein Fb17" /protein_id="EOY25109.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6UA17" /translation="MEDSSAFAAFQADDSERTPEHRGCKRPLTEPQRKAKNERDRKRR QEHRVEFERLQNVGSQCDDLKTQLGMQTNTISELEEENQRLKNRESHLNKRIEELENA LLERAAPNLLLQGNQLQPMVLIGGEINQMVWTRAHLPLMPDLCISAAVQTQVIAAIPA EGVIDKETITNQFTMNVPFLFVASKTEEVTCIRLRGKCSASPEGGLVQYLFEWIPHQT NQKSWENLGWSPVNVGSIQDLAPSGHTGSSCGAQAKFPIKFLLWNSVGTLDTYGQRVV MDLINRFRPAVLVIAETKLPRDRAEEIKDTFHFDAHRVPPNLEFVGGMWLLWLSDVVE VEILSFTEQEIHARINEPQTNQIKGKLLGYAKIHVIGSHFKSIEEFESWLLASPTHSE DAANNAHITQGPRSSQGVRMYTDELVHDFTRKLDAKDKSQVDFSDFSGLMEEVVKSGT VTLPLSLALIDKKIEKKYGEIAAESKQSSCTAMPSRILLCAAIKEMDELQLESIDEKK MLLWRDAINSALNINFKVNFAIEHLKKIGRAYFGLKARNDQELRSIEEKILTLQIELS DWEEKRAKKVEEQNSEVRKECLRYAEYFQGKSLSAGLLH" gene complement(33272813..33282901) /locus_tag="TCM_016523" /note="dbxref CacaoGD:Thecc1EG016523" mRNA complement(join(33272813..33273188,33273338..33273454, 33273566..33273670,33273862..33273984,33274160..33274279, 33277685..33277720,33277901..33278032,33278142..33278228, 33278301..33278352,33278429..33278455,33279183..33279359, 33279458..33279803,33279893..33279944,33282633..33282668, 33282875..33282901)) /locus_tag="TCM_016523" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12205t1" CDS complement(join(33273342..33273454,33273566..33273670, 33273862..33273984,33274160..33274279,33277685..33277720, 33277901..33278032,33278142..33278228,33278301..33278352, 33278429..33278455,33279183..33279359,33279458..33279703)) /locus_tag="TCM_016523" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25110.1" /translation="MQNDNDDDDDFDFVNAKNRGGGKEILLKVGVHEHMVDSSTAAEA AETEATNEHKQTDRKPDKTRAQKDAHNAACRMSRLKRKMDVEKLEADYLQTKKKFHKM QVEHQSMYTVMRADLQSMYTKLEERNSEITLLKTALRILGINFTSVKELQEWILSLKY EKVGQGSGPNDTNVTASAAAGPSFVATHDHSPNNAAVILIYFLVTLGILNASAAGRSF DANYALLRAFDAPNINHDPAAAGFSTPSAAGPSSGTNGANITAFAASGPSFPNHGLPN NAPDNNPFSNDPTLAVGSPTASVIGSFFAANPELASAFDAPYNPSTSDRFTDHDLAAA GSSLIAGHDLPVMSDAPHNHDIISNLSTHHDPAAGFSTSSAAGFSSVANHNLHARKAY DISRLFTHDPCPR" mobile_element 33274450..33276665 /note="source:CACAO_M_E70107_F62_scaffold_10 8 2318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33276663..33277525) /note="source:INTACT271_F62_scaffold_5-int 1 863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33282059..33282523 /note="source:scaffold_4_CACTA_0502 4413 4877" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33282575..33282831 /note="source:INTACT630_F9_scaffold_5-int 1123 1424" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33282602..33282844 /note="source:scaffold_4_CACTA_0502 5576 5846" /mobile_element_type="transposon:TIR/CACTA" gene 33283186..33284867 /locus_tag="TCM_016524" /note="dbxref CacaoGD:Thecc1EG016524" mRNA join(33283186..33283501,33283678..33283765, 33284047..33284132,33284281..33284867) /locus_tag="TCM_016524" /product="General control non-repressible 3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016518t2" /inference="similar to AA sequence:Phytozome:Glyma13g10530.1" /note="quality class is medium, express is medium, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12233t1" CDS join(33283376..33283501,33283678..33283765, 33284047..33284132,33284281..33284340) /locus_tag="TCM_016524" /note="paralog of Thecc1EG016518t2" /codon_start=1 /product="General control non-repressible 3" /protein_id="EOY25111.1" /db_xref="Phytozome:Glyma13g10530.1" /db_xref="TAIR:AT1G64550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0V6" /translation="MLDWRRLTLLYQQVRIAVFSQHHVDGLYLPSNPLFYMMRCYPGV PEQKLRAHLVSFGVAGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL DAVEALIQGLVCSKEGS" gene complement(33285108..33288921) /locus_tag="TCM_016525" /note="dbxref CacaoGD:Thecc1EG016525" mRNA complement(join(33285108..33285511,33285710..33285808, 33286168..33286254,33286327..33286378,33286455..33286481, 33287213..33287356,33287455..33287787,33287877..33288104, 33288822..33288921)) /locus_tag="TCM_016525" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016523t1" /note="quality class is strong, express is medium, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12235t1" CDS complement(join(33285498..33285511,33285710..33285808, 33286168..33286254,33286327..33286378,33286455..33286481, 33287213..33287356,33287455..33287787,33287877..33288104, 33288822..33288836)) /locus_tag="TCM_016525" /note="paralog of Thecc1EG016523t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25112.1" /translation="MAMAIGEVQYCLLSKANKSRHLIARPSHFNPYKSAFIVLLILSS LHIISNFPYIFLYFVLAIDNPSSNSQLSGVIPPPFSKDYRFCVLIPFWPSRNRYRFGG SRPNNTKFRPSRDLKRRPRRRKSEKQRGGGKEILLKVGVHEHMVDSSTAAEAAETEAT NEHKQTGRKPEKTRAQKDAHNASCRKSRLKRKMEFEELAAKNPKMKKKLDEMQVELQS MYTKLEERNSEITLLKTALQKLGTNFTSFKELEEWIISQKYEQVGQGSGPNDTNVTAT AAAGPSFVATHDHSPNNAAGFSTPSAAGPFSAAYHFDFDNDYLFTDYDDLVGRLLF" mobile_element 33290039..33290371 /note="source:scaffold_4_CACTA_0502 4413 4745" /mobile_element_type="transposon:TIR/CACTA" gene complement(33290472..33296811) /locus_tag="TCM_016526" /note="dbxref CacaoGD:Thecc1EG016526" mRNA complement(join(33290472..33290745,33290958..33291481, 33291574..33291646,33291741..33291773,33292444..33292641, 33294023..33294220,33294771..33294815,33296014..33296133, 33296216..33296402,33296637..33296811)) /locus_tag="TCM_016526" /product="Fiber protein Fb17" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016522t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12241t2" mobile_element complement(33290473..33290600) /note="source:CACAO_M_E44478_F9_scaffold_6 936 1062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33290652..33290914 /note="source:INTACT630_F9_scaffold_5-int 1123 1424" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33290679..33290927 /note="source:scaffold_4_CACTA_0502 5576 5846" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(33290973..33291481,33291574..33291646, 33291741..33291773,33292444..33292641,33294023..33294220, 33294771..33294815,33296014..33296133,33296216..33296371)) /locus_tag="TCM_016526" /note="paralog of Thecc1EG016522t1" /codon_start=1 /product="Fiber protein Fb17" /protein_id="EOY25113.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6UA17" /translation="MNGSSSNEAAAEADQVPLHQTKPKGRKRKEEDPDERKKKKNKRD RDRRAKEKVELQRLKGVEAQFKQMQDEYRELKRKNEELKSMRLNLENQEAQTNQLSSD RQLIKIGELKRLQNVESQWTKLCTEFKQMEEYVKTLRNTTDSLANDNELLKFRVPLLE NEIEELTSNLHQKTDELKRLQNAESQRMQQSTQFWKLQEDFTMLRNSNDSLVKENEFL NSRVPLLENEIEQLKSSLRQKESHFMCTSIEELESFLLASPTHSEEDAANNVHITQDF SGLMEEVEKSGAVTLPPSLALIDKKIEKKYGEIAAESKQSSCTAMPSRILLCAAIKEM NELQLESIDEKKMLLWRDAINSALNINFKVDFAIEHLKKIGRAYFGLKARNDQELRSI EEKISTLQIELSNWEEKHAKKVEEQNSEVRKECLRDAEYFQGKSLSVGLLH" gene 33297486..33307412 /locus_tag="TCM_016527" /note="dbxref CacaoGD:Thecc1EG016527" mRNA join(33297486..33297606,33298659..33298871, 33300564..33300655,33300791..33300847,33302870..33303389, 33303711..33303830,33304064..33304179,33304324..33304424, 33304514..33304623,33304893..33304965,33305048..33305215, 33305301..33305388,33306630..33306728,33306853..33307106, 33307243..33307412) /locus_tag="TCM_016527" /product="Trehalase 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002541" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016541t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14400.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01525t00001" mobile_element complement(33297910..33298039) /note="source:CACAO_Mariner_E220_scaffold_9 8989 9111" /mobile_element_type="transposon:TIR/Tc1-Mariner" CDS join(33298666..33298871,33300564..33300655, 33300791..33300847,33302870..33303389,33303711..33303830, 33304064..33304179,33304324..33304424,33304514..33304623, 33304893..33304965,33305048..33305215,33305301..33305388, 33306630..33306728,33306853..33307106,33307243..33307329) /locus_tag="TCM_016527" /note="paralog of Thecc1EG016541t1" /codon_start=1 /product="Trehalase 1" /protein_id="EOY25114.1" /db_xref="Phytozome:POPTR_0003s14400.1" /db_xref="TAIR:AT4G24040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU50" /translation="MDNSGNNSPSLISREKLEDVASWVSATVVSAFFSSLERCSCVNL ATTDPDDDDNPEEAKDRPLTYSSRSGLLLWRHFHRLYSGFAVAATPYAVLSDYIIRSW FLALTQLTIGLSSGLPVSAPLSCSKDSGPVVPTIPLLGFLQRVQETALKTYGKSSFDP KDYVDLSLKFNLSTTVEAFDKLPKTANGSVSVKYLDAFIGEYFKGAGEDLVYADPLDF VPEPHGFLPKVENPEVRAWALEVHALWKNLSRKVSNSVHQHPELHTMLPLPGPVVIPG SRFREVYYWDSYWVIRGLMASKMYATAKAIVTNLISLLDTYGHVLSGARAYYTNRSQP PLLSAMVYEIYNRTGDVELVRRSLPPLLKEYQFWNSEIHKVIIHDAEQGNHSLNQYYA TWNKPRPESSTMDKKIASKLLNDPEKQQFYRELASTTESGWDFSTRWMRNPSEFTTLA TTKILPVDLNIFILRMELDIAFFAKVVGENTVAEDFLRASQTRQKAFNSVFWNEKMGQ WLDYWLNNNAACEESQTWEAQNQNQNVFASNFVPLWIDLFNSDTPLVKKVTRSLQSSG LLRAAGIATSLTNSGNQSLMLRRENKTCAHRDFPNGWAPLQHMIVEGLSRSGSTEARS IAKDIAERWIRTNYVAYKKTGAMHEKYDVEKCGEYRGGGEYIPQTGFGWSNGVVLAFL EEFGWPEDQKMDCN" gene 33302662..33335121 /locus_tag="TCM_016537" /note="dbxref CacaoGD:Thecc1EG016537" mRNA join(33302662..33302756,33329726..33330358, 33330682..33330801,33331035..33331150,33331293..33331393, 33331483..33331592,33331862..33331934,33332017..33332184, 33332279..33332357,33333609..33333708,33333884..33333935, 33334000..33334097,33334234..33335121) /locus_tag="TCM_016537" /product="Trehalase 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002541.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016541t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14400.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc442t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12299t6" mRNA join(33303365..33303542,33329535..33330358, 33330682..33330801,33331035..33331150,33331293..33331393, 33331483..33331592,33331862..33331934,33332017..33332184, 33332270..33332357,33333609..>33333632) /locus_tag="TCM_016537" /product="Trehalase 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30068.m002541.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016541t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14400.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc268t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12299t6" mobile_element 33305448..33305576 /note="source:CACAO_M_S_E84604_F20_scaffold_6 6846 6975" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(33307945..33314839) /locus_tag="TCM_016530" /note="dbxref CacaoGD:Thecc1EG016530" mRNA complement(join(33307945..33308309,33308385..33308472, 33308654..33308696,33309232..33310040,33310496..33310542, 33310640..33310990,33311216..33311437,33311516..33311585, 33311679..33311705,33312143..33312233,33312321..33312404, 33312511..33312872,33313262..33313504,33314713..33314839)) /locus_tag="TCM_016530" /product="Fiber protein Fb17" /note="quality class is strong, express is strong, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc585t64" CDS complement(join(33309381..33310040,33310496..33310542, 33310640..33310990,33311216..33311437,33311516..33311585, 33311679..33311705,33312143..33312233,33312321..33312404, 33312511..33312872,33313262..33313405)) /locus_tag="TCM_016530" /codon_start=1 /product="Fiber protein Fb17" /protein_id="EOY25118.1" /translation="MEDSSAFAAFPADDSERTPDHRGCKRPLTEAQRKARNERDRKRQ QEHRDLLLQGNQLRPMVLIGGEINQMVWTRAHLPLMPDLCISAAVQTQVIAARPAEGV IDKKTITNQFTMNVPFLSVASKTEEVTCIGRGAIAQRVPRGVWSSTFSSGSLTRPTRN LRRIWDGLQDSGYLWSEDCDDLINRFRPAVLVIAETKDVSMWLLWRSDVVEVEVLFFT EQEIHARINGSHFKSIEEAQSWLLASPTHSEDAANNAHITQDKSQDDFSDFRGLMEEV VKSGTVTLPPSLALIDKKIEKKYGEIAAESKQSSFTAMPSRVLLCAEIKEKDELQLEN ESTSMNCKEKLKKEFEMSDLGEMHYFLGLQFIQCPDYIYMHQGKYASELLKKFHMENC KVVETSLATNYKLSKDDEAPDATGNAFHHIVSSCLHLILPSNLPFVLVNLTLNCNVFL CHDLPVMFDALNKHDTMQAMVLSTFGKEANNELMDLGIQSSRSDIQYADEFRQDFIAK LDDKEKSRVDFLDFKGLPEELEKCGRFRLPPSLVPIDESLNKAYGDITAESNQSKPVI RESYILFCFVIKEMNELQLEQVNLDKIILWRNAINSGLSIGFKGNFAIEHLKKIARAY FGYRELKSLEERISELKAKLYDLEKKRNSIIERQSSEMHQECLRDQEYFQGKPLSTGL FLS" gene complement(33315223..33320495) /locus_tag="TCM_016534" /note="dbxref CacaoGD:Thecc1EG016534" mRNA complement(join(33315223..33315540,33315688..33315807, 33315967..33316020,33316132..33316254,33316331..33316453, 33316629..33316748,33317484..33317576,33317676..33317810, 33317985..33318104,33318281..33318400,33318558..33318594, 33318693..33318719,33318850..33318900,33319700..33319840, 33319939..33320495)) /locus_tag="TCM_016534" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12297t10" mRNA complement(join(33315227..33315540,33315688..33315807, 33315967..33316020,33316132..33316233,33316331..33316453, 33316629..33316748,33317541..33317576,33317676..33317768, 33318281..33318400,33318558..33318594,33318693..33318719, 33318850..33318900,33319700..33319840,33319939..33320211, 33320359..33320472)) /locus_tag="TCM_016534" /product="Uncharacterized protein isoform 4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016523t1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12297t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12297t10; inference alignment:Newbler:10:TSA:cgbaL_g00416t00002" mRNA complement(join(33315227..33315540,33315688..33315807, 33315967..33316020,33316120..33316233,33316331..33316453, 33316629..33316748,33317541..33317576,33317676..33317768, 33317985..33318038,33318281..33318400,33318558..33318594, 33318693..33318719,33318850..33318900,33319700..33319840, 33319939..33320211,33320359..33320472)) /locus_tag="TCM_016534" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016523t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12297t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12297t10; inference alignment:Newbler:10:TSA:cgbaL_g00416t00002" mRNA complement(join(33315228..33315540,33315688..33315807, 33315967..33316020,33316132..33316212,33316331..33316453, 33316629..33316748,33317541..33317576,33317676..33317768, 33317985..33318038,33318281..33318400,33318558..33318594, 33318693..33318719,33318850..33318900,33319700..33319840, 33319939..33320211,33320359..33320408)) /locus_tag="TCM_016534" /product="Uncharacterized protein isoform 3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12297t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12297t10; inference alignment:Newbler:10:TSA:cgbaL_g00416t00002" CDS complement(join(33315500..33315540,33315688..33315807, 33315967..33316020,33316132..33316233,33316331..33316453, 33316629..33316748,33317541..33317576,33317676..33317768, 33318281..33318400,33318558..33318594,33318693..33318719, 33318850..33318900,33319700..33319840,33319939..33320067)) /locus_tag="TCM_016534" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG016523t1" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY25122.1" /translation="MVDPSTAAEAAETKATKERKPEKTRAQKDAHNASCRTYRLKTKR RREDLEAMVPELQAENKRMRAEIKRLKAKQGIEIESQELRRALEIGGAIVELLEQIPS AWKVDGKNFTSFDEAQTWFLSQTYDQGPNDTNNNTTASAVAGPSCVANHGLPNNPDNN PSSHDPAAGHESPVMFDAPNYHDTINNLSTHDPAADNESGFSTPSAAGPSSGTNGTNI SAFAASGPSFPNHGLPNNAPDNNSFSHDPAPAAGSPTASALGSLIAAFPGLNYMFDDR DDHGITYLFTDHALAAAGSSFIAGHESPVMFDAPNNHDTINNRSTYDPAAGFPSASAA GSSSYDSGGPGLSTAFAAGSSSAANHNLHARKSYDISGLFTHDPAADNKADFRSEKIP SSKAV" CDS complement(join(33315500..33315540,33315688..33315807, 33315967..33316020,33316132..33316212,33316331..33316453, 33316629..33316748,33317541..33317576,33317676..33317768, 33317985..33318038,33318281..33318400,33318558..33318594, 33318693..33318719,33318850..33318900,33319700..33319840, 33319939..33320067)) /locus_tag="TCM_016534" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY25121.1" /translation="MVDPSTAAEAAETKATKERKPEKTRAQKDAHNASCRTYRLKTKR RREDLEAMVPELQAENKRMRAEIKRLKAKQGIEIESQELRRALEIGGAIVELLEQIPS AWKVDGKNFTSFDEAQTWFLSQTYDQGPNDTNNNTTASAVAGPSCVANHGLPNNPDNN PSSHDPAAALDNPSTSDLFTDHYLAAGHESPVMFDAPNYHDTINNLSTHDPAADNESG FSTPSAAGPSSGTNGTNISAFAASGPSFPNHGLPNNAPDNNSFSHDPAPAAGSPTASA LGSLIAAFPGLNYMFDDRDDHGITYLFTDHALAAGHESPVMFDAPNNHDTINNRSTYD PAAGFPSASAAGSSSYDSGGPGLSTAFAAGSSSAANHNLHARKSYDISGLFTHDPAAD NKADFRSEKIPSSKAV" CDS complement(join(33315500..33315540,33315688..33315807, 33315967..33316020,33316120..33316233,33316331..33316453, 33316629..33316748,33317541..33317576,33317676..33317768, 33317985..33318038,33318281..33318400,33318558..33318594, 33318693..33318719,33318850..33318900,33319700..33319840, 33319939..33320067)) /locus_tag="TCM_016534" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016523t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY25120.1" /translation="MVDPSTAAEAAETKATKERKPEKTRAQKDAHNASCRTYRLKTKR RREDLEAMVPELQAENKRMRAEIKRLKAKQGIEIESQELRRALEIGGAIVELLEQIPS AWKVDGKNFTSFDEAQTWFLSQTYDQGPNDTNNNTTASAVAGPSCVANHGLPNNPDNN PSSHDPAAALDNPSTSDLFTDHYLAAGHESPVMFDAPNYHDTINNLSTHDPAADNESG FSTPSAAGPSSGTNGTNISAFAASGPSFPNHGLPNNAPDNNSFSHDPAPAAGSPTASA LGSLIAAFPGLNYMFDDRDDHGITYLFTDHALAAAGSSFIAGHESPVMFDAPNNHDTI NNRSTYDPAAGNESGFPSASAAGSSSYDSGGPGLSTAFAAGSSSAANHNLHARKSYDI SGLFTHDPAADNKADFRSEKIPSSKAV" CDS complement(join(33315500..33315540,33315688..33315807, 33315967..33316020,33316132..33316254,33316331..33316453, 33316629..33316748,33317484..33317576,33317676..33317810, 33317985..33318104,33318281..33318400,33318558..33318594, 33318693..33318719,33318850..33318900,33319700..33319840, 33319939..33320067)) /locus_tag="TCM_016534" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25119.1" /translation="MVDPSTAAEAAETKATKERKPEKTRAQKDAHNASCRTYRLKTKR RREDLEAMVPELQAENKRMRAEIKRLKAKQGIEIESQELRRALEIGGAIVELLEQIPS AWKVDGKNFTSFDEAQTWFLSQTYDQGPNDTNNNTTASAVAGPSCVANHGLPNNPDNN PSSHDPAAGFPTAFVVASIVAYPELASAFAALDNPSTSDLFTDHYLAAEFPTSSAAGS SLIAGHESPVMFDAPNYHDTINNLSTHDPAADNESGFSTPSAAGPSSGAYHFDFDNYN LFTDYYLAGTNGTNISAFAASGPSFPNHGLPNNAPDNNSFSHDPAPAAGSPTASALGS LIAAFPGLNYMFDDRDDHGITYLFTDHALAAEFPTSSAAGSSFIAGHESPVMFDAPNN HDTINNRSTYDPAAGFPSASAAGSSSYDSGGPGLSTAFAAGSSSAANHNLHARKSYDI SGLFTHDPAADNKADFRSEKIPSSKAV" mobile_element 33316915..33317382 /note="source:CACAO_M_E70107_F62_scaffold_10 1 468" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(33319982..33320568) /locus_tag="TCM_016535" /note="dbxref CacaoGD:Thecc1EG016535" mRNA complement(join(33319982..33320211,33320359..33320568)) /locus_tag="TCM_016535" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc384t118" CDS complement(join(33320042..33320211,33320359..33320554)) /locus_tag="TCM_016535" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25123.1" /translation="MNRAPWSTSGLYNDLVIHLFSYHHQFNCHNTGERRDQENEEWSS FTDKPLQDSSFFDFRPSTVFEGLIPNDTKFGPSRDAAKVSKARRRLRKSEEQREVEKE ITIAEGRCPRKYGGSFYCC" mobile_element 33321834..33322588 /note="source:CACAO_Again_on_S_E199_scaffold_6 2 765" /mobile_element_type="transposon:TIR/hAT" mobile_element 33322540..33322821 /note="source:CACAO_M_E34045_F265_scaffold_4 735 1000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33323603..33323951) /note="source:scaffold_7_CACTA_0795 2886 3110" /mobile_element_type="transposon:TIR/CACTA" gene 33325554..33326045 /locus_tag="TCM_016536" /note="dbxref CacaoGD:Thecc1EG016536" mRNA 33325554..33326045 /locus_tag="TCM_016536" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016527t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g17707t00001" CDS 33325610..33325831 /locus_tag="TCM_016536" /note="paralog of Thecc1EG016527t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25124.1" /translation="MDNSENNSPSLISREKLEEVASWVSATVVSAFFSSLERCSCVNL ATTDPDDDDNPGEAKDRPLTYSSISSPSR" mRNA join(33329592..33330358,33330682..33330801, 33331035..33331150,33331293..33331393,33331483..33331592, 33331862..33331934,33332017..33332184,33332270..33332357, 33333609..33333708,33333884..33334097,33334234..33334867) /locus_tag="TCM_016537" /product="Trehalase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002541.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016541t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14400.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12299t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12299t6" CDS join(33329733..33330358,33330682..33330801, 33331035..33331150,33331293..33331393,33331483..33331592, 33331862..33331934,33332017..33332184,33332270..33332357, 33333609..33333708,33333884..33334097,33334234..33334320) /locus_tag="TCM_016537" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016541t1" /codon_start=1 /product="Trehalase 1 isoform 1" /protein_id="EOY25115.1" /db_xref="Phytozome:POPTR_0003s14400.1" /db_xref="TAIR:AT4G24040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU50" /translation="MASFQSQTNCENLFLFLVSVFFLLLSLTPMSAVNSDSAPSSCSK DSGPVVPTIPLLGFLQRVQETALKTYGKSSFDPKDYVDLSLKFNLSTTVEAFDKLPKT ANGSVSVKDLDAFIGEYFKGAGEDLVYAEPLDFVPEPHGFLPKVENPEVRAWALEVHA LWKNLSRKVSTSVHQHPELHTMLPLPGPVVIPGSRFREVYYWDSYWVIRGLLASKMYE TAKAIVINLISLLDTYGHVLNGARAYYTNRSQPPLLSAMVYEIYNRTGDVELVRKALP PLLKEYQFWNSEIHKVIISDAELGNHSLNRYYAMWNKPRPESSTMDKKFASKLLNDCE KQQFYRELASTAESGWDFSTRWMRNPSEFTTLATTKILPVDLNIFILRMEVDIAFFAK VVGENTVAEDFLRASQTRQKAFNSVFWNAKMGQWLDYWLNNNAACEESQTWEAQNQNE NVFASNFVPLWIDLFNSDTPLVEKVTRSLQSSGLLCAAGIATSLTNSGNQWDFPNGWA PLQHMIVEGLSRSTSTEARSIAKDIAERWIRTNYVAYKKTGAMHEKYDVEKCGEYGGG GEYIPQTGFGWSNGVVLAFLEEFGWPEDQKIGCN" CDS join(33329733..33330358,33330682..33330801, 33331035..33331150,33331293..33331393,33331483..33331592, 33331862..33331934,33332017..33332184,33332279..33332357, 33333609..33333708,33333884..33333935,33334000..33334097, 33334234..33334261) /locus_tag="TCM_016537" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016541t1" /codon_start=1 /product="Trehalase 1 isoform 2" /protein_id="EOY25116.1" /db_xref="Phytozome:POPTR_0003s14400.1" /db_xref="TAIR:AT4G24040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU50" /translation="MASFQSQTNCENLFLFLVSVFFLLLSLTPMSAVNSDSAPSSCSK DSGPVVPTIPLLGFLQRVQETALKTYGKSSFDPKDYVDLSLKFNLSTTVEAFDKLPKT ANGSVSVKDLDAFIGEYFKGAGEDLVYAEPLDFVPEPHGFLPKVENPEVRAWALEVHA LWKNLSRKVSTSVHQHPELHTMLPLPGPVVIPGSRFREVYYWDSYWVIRGLLASKMYE TAKAIVINLISLLDTYGHVLNGARAYYTNRSQPPLLSAMVYEIYNRTGDVELVRKALP PLLKEYQFWNSEIHKVIISDAELGNHSLNRYYAMWNKPRPESSTMDKKFASKLLNDCE KQQFYRELASTAESGWDFSTRWMRNPSEFTTLATTKILPVDLNIFILRMEVDIAFFAK VVGENTVAEDFLRASQTRQKAFNSVFWNAKMGQWLDYWLNNNAACETWEAQNQNENVF ASNFVPLWIDLFNSDTPLVEKVTRSLQSSGLLCAAGIATSLTNSGNQWDFPNGWAPLQ HMIVEGLPTTLPTRRQVQCMRNMMWKSVVNTVVVVNTYPRPVSVGPME" CDS join(33329733..33330358,33330682..33330801, 33331035..33331150,33331293..33331393,33331483..33331592, 33331862..33331934,33332017..33332184,33332270..33332357, 33333609..>33333631) /locus_tag="TCM_016537" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG016541t1" /codon_start=1 /product="Trehalase 1 isoform 3" /protein_id="EOY25117.1" /db_xref="Phytozome:POPTR_0003s14400.1" /db_xref="TAIR:AT4G24040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU50" /translation="MASFQSQTNCENLFLFLVSVFFLLLSLTPMSAVNSDSAPSSCSK DSGPVVPTIPLLGFLQRVQETALKTYGKSSFDPKDYVDLSLKFNLSTTVEAFDKLPKT ANGSVSVKDLDAFIGEYFKGAGEDLVYAEPLDFVPEPHGFLPKVENPEVRAWALEVHA LWKNLSRKVSTSVHQHPELHTMLPLPGPVVIPGSRFREVYYWDSYWVIRGLLASKMYE TAKAIVINLISLLDTYGHVLNGARAYYTNRSQPPLLSAMVYEIYNRTGDVELVRKALP PLLKEYQFWNSEIHKVIISDAELGNHSLNRYYAMWNKPRPESSTMDKKFASKLLNDCE KQQFYRELASTAESGWDFSTRWMRNPSEFTTLATTKILPVDLNIFILRMEVDIAFFAK VVGENTVAEDFLRASQTRQKAFNSVFWNAKMGQWLDYWLNNNAACEESQTWEAQNQNE NVFASNFVPLWIDLFNSDTPLVEKV" mobile_element 33332417..33332558 /note="source:CACAO_M_S_E84604_F20_scaffold_6 6846 6983" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(33334407..33349708) /locus_tag="TCM_016538" /note="dbxref CacaoGD:Thecc1EG016538" mRNA complement(join(33334407..33334795,33336602..33336796, 33336981..33337023,33337100..33337126,33338014..33338145, 33339609..33339772,33340046..33340135,33344465..33345107, 33345617..33345696,33345900..33346034,33346210..33346329, 33346487..33346529,33346629..33346655,33346786..33346836, 33347505..33347657,33347844..33348088,33348907..33349708)) /locus_tag="TCM_016538" /product="Fiber protein Fb17" /note="quality class is medium, express is medium, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12297t13" CDS complement(join(33336633..33336796,33336981..33337023, 33337100..33337126,33338014..33338145,33339609..33339772, 33340046..33340135,33344465..33345107,33345617..33345696, 33345900..33346034,33346210..33346329,33346487..33346529, 33346629..33346655,33346786..33346836,33347505..33347657, 33347844..33348005)) /locus_tag="TCM_016538" /codon_start=1 /product="Fiber protein Fb17" /protein_id="EOY25125.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6UA17" /translation="MVASSGAAKSAKTNNRKQTGSIAKITYFKKRANEAPAKRRAKQV VGERSRANEEMMFEELENMEVELNETGPMFPQMQAGNQMMGDEATRMRNEIHELRGAL QILAADVERMKQIPREWNVDGRNFTSFDEAQTWILSQTYGQGSGTNDTNMTASAAAGP LFASHVLPNNAPDNNPFSHDPAPAAGFPTASAVGSFFAAYPELDSVFDVLENLDFNDP FTDHDLAAINQSSHDLPVMFDALNKHDTVSNLSTYLTREMQAMVLSTFGKEANNELMD LGIQSSRSDIQYADEFRQDFIAKLDDKEKSRVDFLDFKGLPEELEKCGRFRLPPSLVP IDESLNKAYGDITAESNQSKPVIRESYILFCFVIKEMNELQLEQVNLDKIILWRNAIN SGLSIGFKGNFAIEHLKKIARAYFGYRELKSLEERISELKAKLYDLEKKRNSIIERQS SEMHQECLRDQEYFQGKPLSTVPEEIDEEIDIEDESLAVRGSRTLQEIYARLPKHDTI RLITALIAKEGWKIWHLDVKSAFLNGYLTEDIYVHQPEGFIEPGNEEKMMLEELSRKR AINQVTEVENQRRKDQMMRMENGIQELRGAVQELGKRMTFVYEMVAEHALKTCGQGSG DDPMDVDTESSRPDIQYTEQELKSLEERMSELKSELYDLEKKRSEMCREFHRD" gene 33340576..33343210 /locus_tag="TCM_016539" /note="dbxref CacaoGD:Thecc1EG016539" mRNA join(33340576..33340661,33340799..33340914, 33340997..33341084,33342283..33342381,33342506..33342720, 33342874..33343210) /locus_tag="TCM_016539" /product="Trehalase 1, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016527t1" /inference="similar to AA sequence:ricco:30068.m002541" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS join(33340864..33340914,33340997..33341084, 33342283..33342381,33342506..33342720,33342874..33342960) /locus_tag="TCM_016539" /note="dbxref ricco:30068.m002541; paralog of Thecc1EG016527t1" /codon_start=1 /product="Trehalase 1, putative" /protein_id="EOY25126.1" /db_xref="TAIR:AT4G24040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU50" /translation="MGQWLDYWLNNNAACEVESQTWEAQNQNQNVFASNFVPLWIDLF NSDTPLVEKVTRSLQSSGLLCAAGIATSLTNSEINVLMLQRENKTCAHRDFPNGWASL QRMIVEGLSRSGSAEARSIAKDIAERWIRTMLPTRRQAQCMRNMMWKSVIGFGWSNGV VLAFLEEFGWPKDQKIDCN" gene complement(33348358..33349250) /locus_tag="TCM_016540" /note="dbxref CacaoGD:Thecc1EG016540" mRNA complement(33348358..33349250) /locus_tag="TCM_016540" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026074t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage" CDS complement(33348836..33349243) /locus_tag="TCM_016540" /note="paralog of Thecc1EG026074t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25127.1" /translation="MFSVSLLCRFMQKPSQFHFTVAKRVLRYVRGTVDYGLKFEKADG RELVVHCDSDWAGSVDDSRALEVAVFLLVVLSSPGIPRSRKLLLNLQQRLNILQQQQL QIKQFGSGKYCVIWDSNRKRELHCSLIINKQFR" mobile_element 33349282..33350218 /note="source:scaffold_5_CACTA_0607 5392 6350" /mobile_element_type="transposon:TIR/CACTA" gene 33349803..33355175 /locus_tag="TCM_016541" /note="dbxref CacaoGD:Thecc1EG016541" mRNA join(33349803..33350858,33350973..33351077, 33351182..33351301,33351535..33351650,33351795..33351895, 33351985..33352094,33352364..33352436,33352583..33352750, 33352836..33352923,33354128..33354227,33354392..33354605, 33354742..33355175) /locus_tag="TCM_016541" /product="Trehalase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016537t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14400.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12315t2" CDS join(33350233..33350858,33350973..33351077, 33351182..33351301,33351535..33351650,33351795..33351895, 33351985..33352094,33352364..33352436,33352583..33352750, 33352836..33352923,33354128..33354227,33354392..33354605, 33354742..33354828) /locus_tag="TCM_016541" /note="paralog of Thecc1EG016537t1" /codon_start=1 /product="Trehalase 1" /protein_id="EOY25128.1" /db_xref="Phytozome:POPTR_0003s14400.1" /db_xref="TAIR:AT4G24040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU50" /translation="MASFQSQINCEKLFLFLVSAFFLLLSLTPISAVNSVSAPLSCSK DSGPVVPTIPLLGFLQRVQETALKTYGKSSFDPKDYVDLSLKFNLSTTVEAFDKLPKT ANGSVSVKDLDAFIGEYFKGAGEDLVYAEPLDFVPEPHGFLPKVENPEVRAWALEVHA LWKNLSRKVSTSVHQHPELHTMLPLPGPVVIPGSRFREVYYWDSYWVISSVIELEASI WANVKVLIKKASIAGLIAFGTIAPLWGLMASKMYATAKAIVTNLISLLDTYGHVLSGA RAYYTNRSQPPLLSAMVYEIYNRTGDVELVRKSLPPLLKEYQFWNSEIHKVIIRDAEQ GNHCLNRYYAMWNKPRPESSTMDKKFASKLSNDSEKQQFYRELASTAESGWDFSTRWM RNPSEFTTLATTKILPVDLNIFILRMELDIAFFAKVVGENTVAEDFLRASQTRQKAFN SVFWNEKMGQWLDFWLNNNAACEESQTWEDQNQNQNVFASNFVPLWIDLFNSDAPLVE KVMRSLQSSGLLCAAGIATSLTNLGNQWDFPNGWAPLQHMIVEGLSRSGSTEARSIAK DIAERWIRTNYVAYKKIGAMHEKYDVEKCGKYGGGGEYIPQTGFGWSNGVVLALLEEF GWPKDQKIDCN" mobile_element 33352983..33353118 /note="source:CACAO_M_S_E84604_F20_scaffold_6 6846 6978" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33356443..33359653 /locus_tag="TCM_016542" /note="dbxref CacaoGD:Thecc1EG016542" mRNA join(33356443..33356673,33359141..33359653) /locus_tag="TCM_016542" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" CDS 33359214..33359432 /locus_tag="TCM_016542" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25129.1" /translation="MQKRHQLLFSRGKLGTDHIHIRNFAFEIRNLQLWRGEYDVIQRS PEHGARELEQVLQKAESSRLSFSLLYIN" mobile_element complement(33359564..33359610) /note="source:CACAO_hAT_E453_scaffold_1 1691 1739" /mobile_element_type="transposon:TIR/hAT" gene 33361593..33364130 /locus_tag="TCM_016543" /note="dbxref CacaoGD:Thecc1EG016543" mRNA join(33361593..33361982,33362063..33362294, 33362574..33362653,33362745..33362901,33363085..33363166, 33363298..33363385,33363489..33363535,33363639..33364130) /locus_tag="TCM_016543" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019612001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012213t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019612001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11461t2" CDS join(33361859..33361982,33362063..33362294, 33362574..33362653,33362745..33362901,33363085..33363166, 33363298..33363385,33363489..33363535,33363639..33363851) /locus_tag="TCM_016543" /note="paralog of Thecc1EG012213t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY25130.1" /db_xref="Phytozome:GSVIVT01019612001" /db_xref="TAIR:AT4G24050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I3G6" /translation="MLETVKYLFGSTGASGFGSKSTAEQVTETCPDLRSITAIITGAT SGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPDAKIVVMALDLSSLSSVR KFVSEFQSLSLPLNVLINNAGKFAHEHGISEDGIEMTFATNYLGHFLLTKLLLNKMIK TAKESGVQGRIVNVSSSIHGWFSGDVIRHLGQISRSKSPYDATRAYALSKLANVLHTK ELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDLVFFLASKLLKTIPQAAATTC YVATHPRLVNVSGKYFADCNEARPSKLGSNSNEAARLWTASEIMVSIDPKAVFDPRNG FDYDHM" gene complement(33365081..33365888) /locus_tag="TCM_016544" /note="dbxref CacaoGD:Thecc1EG016544" mRNA complement(join(33365081..33365347,33365437..33365559, 33365659..33365721,33365857..33365888)) /locus_tag="TCM_016544" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc7933t1" CDS complement(join(33365135..33365347,33365437..33365541)) /locus_tag="TCM_016544" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25131.1" /translation="MESSNLQKSSTFKAFPLPRFYQKKDSPPSKSETMKMPGINSKSP LLVQQNFPGSMSKAENNKIEDKGKGQSKTNGTKETITKLLRSTRKVLNTSKVTTKGVV SVA" gene complement(33366031..33366718) /locus_tag="TCM_016545" /note="dbxref CacaoGD:Thecc1EG016545" mRNA complement(33366031..33366718) /locus_tag="TCM_016545" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(33366055..33366510) /locus_tag="TCM_016545" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25132.1" /translation="MKEKDGVKQVHQNEQIKEVTDARDEDMQDDRVIPMLEENQLLDD KKEEKDRNGEEINVENQVLKSEKVGDSQIDLAQKPKQGSKQSLKTKPTIPQPFSLSTA KRMSKDKRGSINFSSENMKRKPKERQGSMDFKNSYSQPRLSRSVSLSHK" gene 33366769..33369207 /locus_tag="TCM_016546" /note="dbxref CacaoGD:Thecc1EG016546" mRNA join(33366769..33366876,33368055..33369207) /locus_tag="TCM_016546" /product="Glycosyl hydrolase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013131001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021342t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013131001" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS 33368085..33369110 /locus_tag="TCM_016546" /note="paralog of Thecc1EG021342t1" /codon_start=1 /product="Glycosyl hydrolase superfamily protein, putative" /protein_id="EOY25133.1" /db_xref="Phytozome:GSVIVT01013131001" /db_xref="TAIR:AT4G16260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TTV0" /translation="MNQLLCFTSAFCLILFHGYLSIAEAGLIGVNYGMLGNNLPPPSE VIALLKSRQITRVRLFDPNYDALQALQGSGIDVILGTLNQDLQNLGSDLSFARNWVQE NVIPYSEAVTFRCISAGNEVIPGDLAVHVLPAMRNLKTALREANLGEIPVSTTVSTAV LGNSYPPSRGEFTKEVSPTMKSITEFLAAAKSPLLVNVYPYFAYIYDQQNISLAYALF NSSEVVVKDGQLGYKNLFDAITDAVYSALEKVGGNYVVIVVSESGWPSNENGEIATIA NAQMYNNKLIAHVSGASGTPKRPGRSIDTYVFAIFNENLKPSGTEQHFGLYYPNMTEV YHVEFTQ" gene complement(33369224..33370858) /locus_tag="TCM_016547" /note="dbxref CacaoGD:Thecc1EG016547" mRNA complement(33369224..33370858) /locus_tag="TCM_016547" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS complement(33369277..33370458) /locus_tag="TCM_016547" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25134.1" /translation="MADLEQQRTSSMGQKSMYMVFCFDEGPIRYTLYSFTNINLTHTP RKQSPRSIAMLQMSSDKFPPGMGFVALGSKLYCIGGQLQKGEQKFSSKKVFVLDLNTI ETCHKEKRSPLVEEVADMHEGKCYPYVFEMQGKIYVLDGYRNIDAAEGLAIGSFEVFD PDVGQWGVLPKYYQGDLSEYIRSFVFGHAAVGDRVFFRSDCIDCRCRLSSFDTKNRQW FYDNRCCWVSDEEKKEMPGYISAWNDAFKEHAVVGSSFIVNDTLYALQNGCIGAYHIS NNEDDRYIPCDVVRGIETKLPSKLVKDTYSGPFHSSIFIPEAGLVHLGDEKFCLVTGA TYRNDYAIVKKEIVFLTFQTIKQKSSKADQVFWWADIYDSRAVEGIDALLGMVLYTFV A" gene 33370699..33374115 /locus_tag="TCM_016548" /note="dbxref CacaoGD:Thecc1EG016548" mRNA join(33370699..33371759,33371844..33371902, 33372010..33372079,33372165..33372290,33372394..33372522, 33372957..33374115) /locus_tag="TCM_016548" /product="RNA-binding family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene02208" /inference="similar to AA sequence:Phytozome:POPTR_0003s09270.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13715t00001" CDS join(33371019..33371759,33371844..33371902, 33372010..33372079,33372165..33372290,33372394..33372522, 33372957..33373433) /locus_tag="TCM_016548" /codon_start=1 /product="RNA-binding family protein, putative" /protein_id="EOY25135.1" /db_xref="Phytozome:POPTR_0003s09270.1" /db_xref="TAIR:AT5G46840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZ95" /translation="MGKKKSQEPETTGWDGTVTAQSDIFKTIFGDVSEQNAAFFSLFS DGNPFKRKPQESAENPDRVGLLDSDTVELKQRKRKEKEKAQNSSLGSIEEATGTRKSK KEKPSEDPNLGSLSRNVESSGFDAKSLVNKEKKETSDSPKGQDVKRKKRKRDELETEY EERKYGTVAAAAAAEEEVVVGQKRKKAEDDGVVALVPKEGFDDESKLLRTVFVGNLPI KVKKKVLIKEFSKFGEIESVRIRSIPLSDTKKPRKGAIMLKQFNEKADTVHAYIVFKT EESAEASLAHNMAVVAGNHIRVDRSCPPRKKLKGESDPLYDNKRTVFVGNLPFDVKDE EIYQLFCGINNLESSIEAVRVVRDPQFGVGKGIAYVLFKTREAANVVVRKRTLKLRDR ELRLSHARPDVTPSKRKNPSSSGTNNNPAKKFAVDPSTPSTNGSRSNAKASLSYQGLR ASKSGVQKKAHSKGISPVKTKFKAQKSEKPKERKAKRPSVAARKAKAKAHKDAGVSKQ AGVKRKLDSSSSGSAHQKKKAKRFR" gene complement(33374123..33376705) /locus_tag="TCM_016549" /note="dbxref CacaoGD:Thecc1EG016549" mRNA complement(join(33374123..33374682,33374805..33374975, 33375058..33375328,33376410..33376705)) /locus_tag="TCM_016549" /product="SNARE associated Golgi protein family" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036365t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09280.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10291t1" CDS complement(join(33374557..33374682,33374805..33374975, 33375058..33375328,33376410..33376597)) /locus_tag="TCM_016549" /note="paralog of Thecc1EG036365t1" /codon_start=1 /product="SNARE associated Golgi protein family" /protein_id="EOY25136.1" /db_xref="Phytozome:POPTR_0003s09280.1" /db_xref="TAIR:AT4G17790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0JAK6" /translation="MEGREEMKGSKPRFPLSFWEVTVASTVVMAFVLGLVGVYLTMPA SDYSFLKLPRSLEDLQILRDHLETYTSDYTVQVLVGYCVVYIFMQTFMIPGTVFMSLL AGALFGVFKGVALVVFTATAGASSCYFLSKLIGRPLVFSLWPDKLSFFQAQVAQRRER LLNYMLFLRLTPTLPNTFINVASPIVDVPYHIFFMATIIGLIPAAYITVRAGIALGEL QSVGDLYDFNSIATLFLIGVVSVTPTLMSKTKS" gene 33384862..33386460 /locus_tag="TCM_016550" /note="dbxref CacaoGD:Thecc1EG016550" mRNA 33384862..33386460 /locus_tag="TCM_016550" /product="Inositol 1,3,4-trisphosphate 5/6-kinase family protein" /inference="alignment:exonerate-protein:2:frave:gene02213" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025500t2" /inference="similar to AA sequence:frave:gene02213" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc418t5" CDS 33384904..33386013 /locus_tag="TCM_016550" /note="dbxref frave:gene02213; paralog of Thecc1EG025500t2" /codon_start=1 /product="Inositol 1,3,4-trisphosphate 5/6-kinase family protein" /protein_id="EOY25137.1" /db_xref="TAIR:AT5G16760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84Y01" /translation="MAREERRFEIGYALVPKKENSFIRESLVNQAKSRGIDLVKIDRG RPLVEQGRFHCVLHKLYGEDWRSQLEDFRSRNPNAVIVDSPDAIERLHNRISMLQVVS ELKIENQSETFGIPKQIVIYDQETLFDNQAWELLKFPVIAKPLVADGSAKSHKMSLVF NHDGLNKLKPPIVLQEFVNHGGVIFKVYVVGEYVKCVKRKSLPDVSEEKLKSLEGSLS FSQVSNLATHEKSDDKYYKKMHLEDTELPPQSFMTDIARGLRRAMKLNLFNFDVIRDT RFGNRYLIIDINYFPGYAKMPGYETVLTDFFCDIVNRKERDVVVERGLAVECSQEKVA GTDGRSVLSCEEEVRKTVTNSCCSDGEDKENSIQV" gene complement(33390125..33392031) /locus_tag="TCM_016551" /note="dbxref CacaoGD:Thecc1EG016551" mRNA complement(join(33390125..33390390,33390499..33391221, 33391316..33391596,33391763..33392031)) /locus_tag="TCM_016551" /product="Myb domain protein 39, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016552t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09300.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS complement(join(33390354..33390390,33390499..33391221, 33391316..33391581)) /locus_tag="TCM_016551" /note="paralog of Thecc1EG016552t1" /codon_start=1 /product="Myb domain protein 39, putative" /protein_id="EOY25138.1" /db_xref="Phytozome:POPTR_0003s09300.1" /db_xref="TAIR:AT4G17785.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZ98" /translation="MGRSPCCAEDANLKKGPWTPEEDQKLVDYINKNGLGSWRTFPKL AGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEERVIINLHSVLGNKWSRIATHLPGRTD NEIKNFWNTHIRKKLLNMGIDPHTHKPRTDLDHLLNLSQLLCAAQLGNLMNPWDNAFK LQADAAQLAKAQLLQNLMQIINTNKLANVESAAGFPGSQNPYSFEGLLNGTSTLSAKE QTPQTQNIQNNGGAIPQASSEYEAAENPWAYFQGGVNYESLDMNNQSFSNSFEQTENP LPELVSGSPETSPITQMENKTATAPDSTIYDFEAWEKLIMEDEGDGSYWKEILEFTSS SSSPISW" gene complement(33395378..33397758) /locus_tag="TCM_016552" /note="dbxref CacaoGD:Thecc1EG016552" mRNA complement(join(33395378..33395641,33395752..33396489, 33396599..33396879,33397675..33397758)) /locus_tag="TCM_016552" /product="Myb domain protein 39, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013126001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016551t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09300.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(33395605..33395641,33395752..33396489, 33396599..33396864)) /locus_tag="TCM_016552" /note="paralog of Thecc1EG016551t1" /codon_start=1 /product="Myb domain protein 39, putative" /protein_id="EOY25139.1" /db_xref="Phytozome:POPTR_0003s09300.1" /db_xref="TAIR:AT4G17785.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZ98" /translation="MGRSPCCSDEANLKKGPWTPEEDQKLVDYINKHGHGCWRTLPKH AGLNRCGKSCRLRWANYLRPDIKRGKFSEEEERIIINLHSVLGNKWSKIATHLPGRTD NEIKNFWNTHIRKKLLNMGLDPNTHKSRTDINHLFNLSQLLCAAQLGNLMNPWDSTAF KVQADAAELAKIQLLQNLMQILNTKKLSNVRAGLVGSQNSCPFEGVGLVNGTSSVYAN KTASIPQNFQSAGSMTQTSSDYQQGVDNSWACFEGEFKYESRDMNDKCLSSSCDFQTD NSLSALVSESSEIASMNQMEHKTNTNHCSTISADTSIFQAWEKLMDDETGDSYWKDIL DLTSSSSSPIEW" mobile_element 33398451..33398535 /note="source:INTACT433_F212_scaffold_1-int 3052 3136" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(33398859..33400248) /locus_tag="TCM_016553" /note="dbxref CacaoGD:Thecc1EG016553" mRNA complement(33398859..33400248) /locus_tag="TCM_016553" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(33399834..33400052) /locus_tag="TCM_016553" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25140.1" /translation="MNDMSLSYNSQTENTLPALVSGSPETSTNNQIKINNNRNHVSTV STDSSACEAWEKLSDSENSGFDWKDTLQ" gene complement(33400190..33401379) /locus_tag="TCM_016554" /note="dbxref CacaoGD:Thecc1EG016554" mRNA complement(join(33400190..33400811,33400901..33401379)) /locus_tag="TCM_016554" /product="Myb domain protein 93, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016551t1" /inference="similar to AA sequence:frave:gene02214" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage" mobile_element 33400265..33400339 /note="source:CACAO_M_E85273_F192_scaffold_10 176 250" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(33400450..33400811,33400901..33401174)) /locus_tag="TCM_016554" /note="dbxref frave:gene02214; paralog of Thecc1EG016551t1" /codon_start=1 /product="Myb domain protein 93, putative" /protein_id="EOY25141.1" /db_xref="TAIR:AT1G34670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZ98" /translation="MVGPPCCQDANLKKGPWTGEEDQKLVDYINKHAWTALPKLAGLN RCGKSCGLRWTNYLRPDIKRGKFSDEEESIIVGNKNVLLVPIFLRSYDNEIKNYWNSH IKKKLLNMGIDPKTHKPRTDHILNISQLICAAQLGNLMNPWDTAFKLQDDAAQLAKTQ LLQNPLQANAGFLGSQYVYPLVNGRSTLSGKESTRTQKTQSSGSISQTPSN" gene complement(33402030..33409438) /locus_tag="TCM_016555" /note="dbxref CacaoGD:Thecc1EG016555" mRNA complement(join(33402030..33403247,33403339..33403751, 33403981..33404228,33404309..33404550,33404673..33405091, 33405699..33406078,33406348..33406888,33407031..33407290, 33407423..33407623,33408155..33408330,33408439..33408493, 33408598..33409438)) /locus_tag="TCM_016555" /product="Multidrug/pheromone exporter, MDR family, ABC transporter family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09320.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018479t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09320.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1503t4" CDS complement(join(33402694..33403247,33403339..33403751, 33403981..33404228,33404309..33404550,33404673..33405091, 33405699..33406078,33406348..33406888,33407031..33407290, 33407423..33407623,33408155..33408330,33408439..33408493, 33408598..33408864)) /locus_tag="TCM_016555" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG018479t1" /codon_start=1 /product="Multidrug/pheromone exporter, MDR family, ABC transporter family isoform 1" /protein_id="EOY25142.1" /db_xref="Phytozome:POPTR_0003s09320.1" /db_xref="TAIR:AT4G25960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZA0" /translation="MTPPCSLSGNQDSEGTKKKKEGMKQHKVPLLKLFSFADFYDYVL MALGSLGACVHGASVPVFFIFFGKLINIIGMAYLFPKEASHKVAKYSLDFVYLSVAIL FSSWIEVACWMHTGERQAAKIRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIVVQ DALSEKVGNFMHYISRFIAGFSIGFARVWQISLVTLSIVPLIALAGGIYAYVATGLIA RVRNSYVKAGEIAEEVIGNVRTVQAFAGEEKAVKSYKEALMKTYEYGRKAGLTKGLGL GSLHCVLFVSWALLVWFTSIVVHKHIANGGDSFTTMLNVVISGLSLGQAAPDISAFIR ARAAAYPIFEMIERNTVSKTSSKTGYKLSKVEGHIEFKDVSFSYPSRPDVVIFNKFCL NIPAGKIVALVGGSGSGKSTVISLIERFYEPLTGDILLDGNNIKDLDLKWLRQQIGLV NQEPALFATTIRENILYGKDEATLDEIMRAAKLSEAIAFINNLPDRFETQVGERGIQL SGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRL STIRNADVIAVVQNGTIVETGSHEELISNPYSAYSSLVQLQETAPLQRYPSQGPTLSR PLSLSYSRELSRTRTSFGASFRSEKDSVLSRAGADAIDTGKAAYVSPGRLYSMVGPDW YYGVFGTIAALIAGAQMPLFALGVSQALVAYYMDWDTTCREVKKIAILFSCAAVITVI VHAIEHLCFGIMGERLTLRVREGMFSAILKNEIGWFDDLNNASSMLASHLETDATFLK GVVVDRSAILIQNVGLLVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGG NLSKAYLKANMLAAEAVSNIRTVAAFCAEEKILDLYARELVEPSKRSFNRGQIAGIFY GISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLK GNQMVASVFEIMDRKTQVAGDVGEELTNVEGTIELRGVHFSYPSRPDVVIFKDFDLKV RSGKSMALVGQSGSGKSSVLALILRFYDPTVGRVMIDGRDIRKLQLKSLRKHIGLVQQ EPALFATSIYENILYGREGASESEVIEAAKLANAHGFISSLPEGYSTKVGERGVQLSG GQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMRNRTTVMVAHRLST IKNADQISVIQEGKIIEQGTHSTLIENKDGPYFKLINLQQQQQQLEQ" mRNA complement(join(<33403223..33403247,33403339..33403751, 33403981..33404228,33404309..33404550,33404673..33405091, 33405699..33406078,33406348..33406888,33407031..33407290, 33407423..33407623,33408155..33408330,33408439..33408493, 33408598..33408870,33409045..33409164)) /locus_tag="TCM_016555" /product="Multidrug/pheromone exporter, MDR family, ABC transporter family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09320.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018479t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013125001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1351t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1503t4" CDS complement(join(<33403225..33403247,33403339..33403751, 33403981..33404228,33404309..33404550,33404673..33405091, 33405699..33406078,33406348..33406888,33407031..33407290, 33407423..33407623,33408155..33408330,33408439..33408493, 33408598..33408864)) /locus_tag="TCM_016555" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG018479t1" /codon_start=1 /product="Multidrug/pheromone exporter, MDR family, ABC transporter family isoform 2" /protein_id="EOY25143.1" /db_xref="Phytozome:GSVIVT01013125001" /db_xref="TAIR:AT4G25960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZA0" /translation="MTPPCSLSGNQDSEGTKKKKEGMKQHKVPLLKLFSFADFYDYVL MALGSLGACVHGASVPVFFIFFGKLINIIGMAYLFPKEASHKVAKYSLDFVYLSVAIL FSSWIEVACWMHTGERQAAKIRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIVVQ DALSEKVGNFMHYISRFIAGFSIGFARVWQISLVTLSIVPLIALAGGIYAYVATGLIA RVRNSYVKAGEIAEEVIGNVRTVQAFAGEEKAVKSYKEALMKTYEYGRKAGLTKGLGL GSLHCVLFVSWALLVWFTSIVVHKHIANGGDSFTTMLNVVISGLSLGQAAPDISAFIR ARAAAYPIFEMIERNTVSKTSSKTGYKLSKVEGHIEFKDVSFSYPSRPDVVIFNKFCL NIPAGKIVALVGGSGSGKSTVISLIERFYEPLTGDILLDGNNIKDLDLKWLRQQIGLV NQEPALFATTIRENILYGKDEATLDEIMRAAKLSEAIAFINNLPDRFETQVGERGIQL SGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRL STIRNADVIAVVQNGTIVETGSHEELISNPYSAYSSLVQLQETAPLQRYPSQGPTLSR PLSLSYSRELSRTRTSFGASFRSEKDSVLSRAGADAIDTGKAAYVSPGRLYSMVGPDW YYGVFGTIAALIAGAQMPLFALGVSQALVAYYMDWDTTCREVKKIAILFSCAAVITVI VHAIEHLCFGIMGERLTLRVREGMFSAILKNEIGWFDDLNNASSMLASHLETDATFLK GVVVDRSAILIQNVGLLVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGG NLSKAYLKANMLAAEAVSNIRTVAAFCAEEKILDLYARELVEPSKRSFNRGQIAGIFY GISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLK GNQMVASVFEIMDRKTQVAGDVGEELTNVEGTIELRGVHFSYPSRPDVVIFKDFDLKV RSGKSMALVGQSGSGKSSVLALILRFYDPTVGRVMIDGRDIRKLQ" mobile_element complement(33409903..33409957) /note="source:scaffold_10_CACTA_0137 6929 6983" /mobile_element_type="transposon:TIR/CACTA" gene complement(33413440..33419373) /locus_tag="TCM_016556" /note="dbxref CacaoGD:Thecc1EG016556" mRNA complement(join(33413440..33414545,33414955..33415228, 33415777..33417815,33419083..33419373)) /locus_tag="TCM_016556" /product="Trehalose phosphatase/synthase 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011284t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s09330.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11493t1" mRNA complement(join(33413629..33414545,33414955..33415228, 33415777..33417815,33418527..33418578)) /locus_tag="TCM_016556" /product="Trehalose phosphatase/synthase 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011284t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s09330.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1172t1; alternateUTRof:Thecc1EG016556t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11493t1" CDS complement(join(33414219..33414545,33414955..33415228, 33415777..33417764)) /locus_tag="TCM_016556" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011284t2" /codon_start=1 /product="Trehalose phosphatase/synthase 5 isoform 1" /protein_id="EOY25144.1" /db_xref="Phytozome:POPTR_0003s09330.1" /db_xref="TAIR:AT4G17770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23617" /translation="MVSRSYSNLLDLASGDSPTFGREKKRFPRVATVPGLLSEVDDDN CNSVGSDAPSSVSQERMIIVGNQLPLRSHRNADDGEWCFSWDEDSLLLQLKDGLGEDV DVIYVGCLKEEIAPNEQDDVAQTLLETFKCVPAFLPPELFTKFYHGFCKQHLWPLFHY MLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVISPDDDYVWVHDYHLMVLPTFLRK RFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRM LGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQSVLNLPETEAKVAELRNQFRGQ TVLLGVDDMDIFKGISLKLLAMEQLLMQHPENTGEVVLVQIANPARGRGRDVQEVQSE TYATVKRINDTFGRPGYDPVVLIDSNLQFYERIAYYVIAECCLVTAVRDGMNLIPYEY IICRQGNEKLDETLGLNPLVPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDS ALIVSEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLERACGDHLRRRCWGIGFGLGFR VIALDPNFRKLSVEHIVSAYKRTKNRAILLDYDGTLIRTGSLSTTPNAEAVVILNNLC RDPKNVVFLVSGKDRKTLTEWFSSCEKLGIAAEHGYFIRSNRDADWETCVSVPDFDWK QIAEPVMKLYTETTDGSAIETKESALVWNYLYADPDFGFCQAKELLDHLESVLANEPV SVKSGQHIVEVKPQGVNKGLVAEHLLTTMQQKGMLPDFVLCIGDDRSDEDMFEVIMRA RTGPSLSPVAEVFACTVGQKPSKAKYYVEDRTEILRMLQGLANASEQTAKSTPQASQQ VIIDRE" CDS complement(join(33414219..33414545,33414955..33415228, 33415777..33417764)) /locus_tag="TCM_016556" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011284t2" /codon_start=1 /product="Trehalose phosphatase/synthase 5 isoform 1" /protein_id="EOY25145.1" /db_xref="Phytozome:POPTR_0003s09330.1" /db_xref="TAIR:AT4G17770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23617" /translation="MVSRSYSNLLDLASGDSPTFGREKKRFPRVATVPGLLSEVDDDN CNSVGSDAPSSVSQERMIIVGNQLPLRSHRNADDGEWCFSWDEDSLLLQLKDGLGEDV DVIYVGCLKEEIAPNEQDDVAQTLLETFKCVPAFLPPELFTKFYHGFCKQHLWPLFHY MLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVISPDDDYVWVHDYHLMVLPTFLRK RFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRM LGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQSVLNLPETEAKVAELRNQFRGQ TVLLGVDDMDIFKGISLKLLAMEQLLMQHPENTGEVVLVQIANPARGRGRDVQEVQSE TYATVKRINDTFGRPGYDPVVLIDSNLQFYERIAYYVIAECCLVTAVRDGMNLIPYEY IICRQGNEKLDETLGLNPLVPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDS ALIVSEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLERACGDHLRRRCWGIGFGLGFR VIALDPNFRKLSVEHIVSAYKRTKNRAILLDYDGTLIRTGSLSTTPNAEAVVILNNLC RDPKNVVFLVSGKDRKTLTEWFSSCEKLGIAAEHGYFIRSNRDADWETCVSVPDFDWK QIAEPVMKLYTETTDGSAIETKESALVWNYLYADPDFGFCQAKELLDHLESVLANEPV SVKSGQHIVEVKPQGVNKGLVAEHLLTTMQQKGMLPDFVLCIGDDRSDEDMFEVIMRA RTGPSLSPVAEVFACTVGQKPSKAKYYVEDRTEILRMLQGLANASEQTAKSTPQASQQ VIIDRE" mRNA complement(join(<33414524..33414545,33414955..33415228, 33415777..33417815,33418020..33418482)) /locus_tag="TCM_016556" /product="Trehalose phosphatase/synthase 5 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011284t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s09330.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc726t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11493t1" CDS complement(join(<33414525..33414545,33414955..33415228, 33415777..33417764)) /locus_tag="TCM_016556" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG011284t2" /codon_start=1 /product="Trehalose phosphatase/synthase 5 isoform 3" /protein_id="EOY25146.1" /db_xref="Phytozome:POPTR_0003s09330.1" /db_xref="TAIR:AT4G17770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23617" /translation="MVSRSYSNLLDLASGDSPTFGREKKRFPRVATVPGLLSEVDDDN CNSVGSDAPSSVSQERMIIVGNQLPLRSHRNADDGEWCFSWDEDSLLLQLKDGLGEDV DVIYVGCLKEEIAPNEQDDVAQTLLETFKCVPAFLPPELFTKFYHGFCKQHLWPLFHY MLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVISPDDDYVWVHDYHLMVLPTFLRK RFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRM LGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQSVLNLPETEAKVAELRNQFRGQ TVLLGVDDMDIFKGISLKLLAMEQLLMQHPENTGEVVLVQIANPARGRGRDVQEVQSE TYATVKRINDTFGRPGYDPVVLIDSNLQFYERIAYYVIAECCLVTAVRDGMNLIPYEY IICRQGNEKLDETLGLNPLVPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDS ALIVSEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLERACGDHLRRRCWGIGFGLGFR VIALDPNFRKLSVEHIVSAYKRTKNRAILLDYDGTLIRTGSLSTTPNAEAVVILNNLC RDPKNVVFLVSGKDRKTLTEWFSSCEKLGIAAEHGYFIRSNRDADWETCVSVPDFDWK QIAEPVMKLYTETTDGSAIETKESALVWNYLYADPDFGFCQAKELLDHLESVLANEPV SVKSGQHIVEVKPQGVNKGLV" mobile_element complement(33421036..33421133) /note="source:scaffold_8_CACTA_0858 14643 14739" /mobile_element_type="transposon:TIR/CACTA" gene complement(33422133..33427200) /locus_tag="TCM_016558" /note="dbxref CacaoGD:Thecc1EG016558" mRNA complement(join(33422133..33423015,33424294..33424680, 33425617..33426118,33426204..33426278,33426526..33427188)) /locus_tag="TCM_016558" /product="NDR1/HIN1-like 8 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031169" /inference="similar to AA sequence:Phytozome:GSVIVT01013115001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1220t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1237t5; inference alignment:Newbler:10:TSA:cgbaB_g01721t00001" mRNA complement(join(33422155..33423035,33423411..33423558, 33423670..33423896,33424295..33424680,33425605..33426118, 33426204..33426278,33426526..33427200)) /locus_tag="TCM_016558" /product="NDR1/HIN1-like 8, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031169" /inference="similar to AA sequence:Phytozome:GSVIVT01013115001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01721t00001" CDS complement(join(33422907..33423035,33423411..33423558, 33423670..33423896,33424295..33424680,33425605..33426118, 33426204..33426278,33426526..33427083)) /locus_tag="TCM_016558" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NDR1/HIN1-like 8, putative isoform 1" /protein_id="EOY25147.1" /db_xref="Phytozome:GSVIVT01013115001" /db_xref="TAIR:AT1G32340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TTU0" /translation="MRRTRRGSRQGHHHHQPLQADETWSVKPLHDTPQPPQQDPHHQE EESNLNGPSSPSISQQLQSPDFTSKPSRTHRNPNWKYRRGHVAKPRFVKKSELISSKS ELSSEDNIASLSVVEEVNCDQEENKGSEAFVSKIDGDGEEIEGDESQNSADDVVSRFE ELRLRVDEPELSEEQLRINDQLQEDELLAMKSIYGENVFILDKEMGLRSLKIHIHLEG SGETIITTKLNSSNDVGGSETSDDFSYSFKVQYLPPIVLTCLLPRSYPSHLPPYFTIS VQWLHSARISDLCSQLDLIWKEQEGQEVIYRWADWLQNFSLSYLGCDKEIMLGPYGIE NNGERRAVSGSVSPDVDVPFIRSYNDEICHENFLESLHECSICFSEYAGIDFIRLPCQ HFFCCKCIKTYSDMHITEGTVNKLLCPEAKCGGTVPPGLLKRLLGDEGYERWESLMLQ KTLESMSDVVYCPRCETPCIEDEDQHAQCSKCFFSFCTLCRERRHVGIECMTPELKLR ILQERQNSSQLNQAQKHKEREMINEILSMKEIMRDAKQCPSCKMAISKTEGCNKMVCE NCGQYFCYRCNSAINGYDHFRDGACELFPQEMIREWEERLNARQVLGQVHAQLFAERG QPCPNCRQLNAKVGNNNHIFCWACQMHYCYLCKNIVRRSSQHYGPKGCKQHTEG" CDS complement(join(33422963..33423015,33424294..33424680, 33425617..33426118,33426204..33426278,33426526..33427083)) /locus_tag="TCM_016558" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="NDR1/HIN1-like 8 isoform 3" /protein_id="EOY25149.1" /db_xref="Phytozome:GSVIVT01013115001" /db_xref="TAIR:AT1G32340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TTU0" /translation="MRRTRRGSRQGHHHHQPLQADETWSVKPLHDTPQPPQQDPHHQE EESNLNGPSSPSISQQLQSPDFTSKPSRTHRNPNWKYRRGHVAKPRFVKKSELISSKS ELSSEDNIASLSVVEEVNCDQEENKGSEAFVSKIDGDGEEIEGDESQNSADDVVSRFE ELRLRVDEPELSEEQLRINDQLQEDELLAMKSIYGENVFILDKEMGLRSLKIHIHLEG SGETIITTKLNSSNDVGGSETSDDFSYSFKVQYLPPIVLTCLLPRSYPSHLPPYFTIS VQWLHSARISDLCSQLDLIWKEQEGQEVIYRWADWLQNFSLSYLGCDKEIMLGPYGIE NNGERRAVSGSVSPDVDVPFIRSYNDEICHENFLESLHECSICFRIDFIRLPCQHFFC CKCIKTYSDMHITEGTVNKLLCPEAKCGGTVPPGLLKRLLGDEGYERWESLMLQKTLE SMSDVVYCPRCETPCIEDEDQHAQCSKCFFSFCTLCRERRHVGIECMTPELKLRILQV SAGRAKCTIVTCAKIL" mRNA complement(join(33423005..33423035,33423411..33423597, 33423670..33423896,33424295..33424680,33425605..33426118, 33426204..33426278,33426526..33427188)) /locus_tag="TCM_016558" /product="NDR1/HIN1-like 8 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031169" /inference="similar to AA sequence:Phytozome:GSVIVT01013115001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1237t5; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1237t5; inference alignment:Newbler:10:TSA:cgbaB_g01721t00001" CDS complement(join(33423591..33423597,33423670..33423896, 33424295..33424680,33425605..33426118,33426204..33426278, 33426526..33427083)) /locus_tag="TCM_016558" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NDR1/HIN1-like 8 isoform 2" /protein_id="EOY25148.1" /db_xref="Phytozome:GSVIVT01013115001" /db_xref="TAIR:AT1G32340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TTU0" /translation="MRRTRRGSRQGHHHHQPLQADETWSVKPLHDTPQPPQQDPHHQE EESNLNGPSSPSISQQLQSPDFTSKPSRTHRNPNWKYRRGHVAKPRFVKKSELISSKS ELSSEDNIASLSVVEEVNCDQEENKGSEAFVSKIDGDGEEIEGDESQNSADDVVSRFE ELRLRVDEPELSEEQLRINDQLQEDELLAMKSIYGENVFILDKEMGLRSLKIHIHLEG SGETIITTKLNSSNDVGGSETSDDFSYSFKVQYLPPIVLTCLLPRSYPSHLPPYFTIS VQWLHSARISDLCSQLDLIWKEQEGQEVIYRWADWLQNFSLSYLGCDKEIMLGPYGIE NNGERRAVSGSVSPDVDVPFIRSYNDEICHENFLESLHECSICFSEYAGIDFIRLPCQ HFFCCKCIKTYSDMHITEGTVNKLLCPEAKCGGTVPPGLLKRLLGDEGYERWESLMLQ KTLESMSDVVYCPRCETPCIEDEDQHAQCSKCFFSFCTLCRERRHVGIECMTPELKLR ILQERQNSSQLNQAQKHKEREMINEILSMKEIMRDAKQCPSCKMAISKTEGCNKMVCE NCGQYFCYRCNSAINGYDHFST" gene 33427373..33435417 /locus_tag="TCM_016559" /note="dbxref CacaoGD:Thecc1EG016559" mRNA join(33427373..33427621,33428321..33428662, 33428781..33428939,33429453..33430327,33430721..33430925, 33431206..33431413,33432006..33432505,33432733..33433159, 33433430..33433510,33433643..33433833,33433904..33434091, 33434737..33435417) /locus_tag="TCM_016559" /product="Cam interacting protein 111 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03350.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03350.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1112t12" mRNA join(33427373..33427621,33428352..33428662, 33428781..33428939,33429453..33430327,33430721..33430925, 33431206..33431413,33432006..33432505,33432733..33433159, 33433430..33433510,33433643..33433833,33433904..33434091, 33434782..33435417) /locus_tag="TCM_016559" /product="Cam interacting protein 111 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03350.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03350.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b015998t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1112t12" mRNA join(33427593..33427621,33428321..33428662, 33428781..33428939,33429453..33430327,33430721..33430925, 33431206..33431413,33432006..33432505,33432733..33433029, 33433430..>33433458) /locus_tag="TCM_016559" /product="Cam interacting protein 111 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03350.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03350.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1112t3; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1112t12; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc882t3" mRNA join(33427597..33427621,33428321..33428662, 33428781..33428939,33429453..33430327,33430721..33430925, 33431206..33431413,33432006..33432505,33432733..33433004, 33433137..33433261) /locus_tag="TCM_016559" /product="Cam interacting protein 111 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03350.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03350.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc876t13; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1112t12; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc882t3" CDS join(33428375..33428662,33428781..33428939, 33429453..33430327,33430721..33430925,33431206..33431413, 33432006..33432505,33432733..33433159,33433430..33433510, 33433643..33433833,33433904..33434091,33434782..33434866) /locus_tag="TCM_016559" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cam interacting protein 111 isoform 2" /protein_id="EOY25151.1" /db_xref="Phytozome:POPTR_0006s03350.1" /db_xref="TAIR:AT3G56690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H8R9" /translation="MPSKSKKQSKMPSRQSNSDPSASPRTPSVSSLDSEVSEEVLRCS LEEVSRRYPSLIGKSAFIGRVSDVGLETRGCKIWLSESSMVASYLAPGSLVSVSLAAL KNEHSNGFPLSLVTDECAKTFVVDLANETAKEVGNYFALATVFPSCKVLKNGVRLSSN LSYTLGCPASGSTVFVYPIQSEFKTGLVSGRENAHNPNANYLSLHSCKQLHLELTSFK NTVNTSNDILPKMEFATEKTHGQYENGITSSPKTPLYQPKLSSPHSSQLASPLCEGSA SNFSKPNGLYVDSFDVKEILRDESSKKLLETCAASWLYSRNLLCGNIVAFPILSELCI FRVRGAGITNQDLKNGSHHSLPTQNLESMEHVDNAFVVDYETKVYLCFSSDLSSETLA ERPSPCLQLDLEEVETIMEHDISELGGLSQEYAVLKEIISSSVKNALSSFGLQTTKGV LLHGPPGTGKTSLARLCVRDAGVNLFYVNGPEIVSEYYGESEQELLKVFESATQAAPS VVFIDELDAIAPARKEGGEQLSQRMVATLLNLMDGISRTDGVLVIAATNRPDSIEPAL RRPGRLGRELEIGVPSPKQRLDILHTLLSKMDHCISDMQVQQLAMATHGFVGADLASL CNEAALVCLRRYAKFKVSCQGLDSCGMPITYIGHSGHKMEGMECGSDLRDISISCSDS ASSCKTDLPDSAETVSQITASIQTGISDISEGMSLVKEKCLLRLAFEDFEKARVKVRP SAMREVILEVPKVNWEDVGGQREVKNQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGP PGCSKTLMARAVASKAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFD EIDSLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVDVTVIAATNRPDKIDSALLRP GRFDRLLYVGPPNKNDREDIFRIHLRKIPCNSDVSLKELAHLTEGCTGADISLICREA AVAALEESLDAEEVTMCHLKAAIRQARPSEIQLYQELSAKFERLVHSSTIEKTLGSQQ CSIRSTGLPFCRTLIKSMSQFFARFPAALLHSKSATNG" CDS join(33428375..33428662,33428781..33428939, 33429453..33430327,33430721..33430925,33431206..33431413, 33432006..33432505,33432733..33433159,33433430..33433510, 33433643..33433833,33433904..33434091,33434737..33434752) /locus_tag="TCM_016559" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cam interacting protein 111 isoform 1" /protein_id="EOY25150.1" /db_xref="Phytozome:POPTR_0006s03350.1" /db_xref="TAIR:AT3G56690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H8R9" /translation="MPSKSKKQSKMPSRQSNSDPSASPRTPSVSSLDSEVSEEVLRCS LEEVSRRYPSLIGKSAFIGRVSDVGLETRGCKIWLSESSMVASYLAPGSLVSVSLAAL KNEHSNGFPLSLVTDECAKTFVVDLANETAKEVGNYFALATVFPSCKVLKNGVRLSSN LSYTLGCPASGSTVFVYPIQSEFKTGLVSGRENAHNPNANYLSLHSCKQLHLELTSFK NTVNTSNDILPKMEFATEKTHGQYENGITSSPKTPLYQPKLSSPHSSQLASPLCEGSA SNFSKPNGLYVDSFDVKEILRDESSKKLLETCAASWLYSRNLLCGNIVAFPILSELCI FRVRGAGITNQDLKNGSHHSLPTQNLESMEHVDNAFVVDYETKVYLCFSSDLSSETLA ERPSPCLQLDLEEVETIMEHDISELGGLSQEYAVLKEIISSSVKNALSSFGLQTTKGV LLHGPPGTGKTSLARLCVRDAGVNLFYVNGPEIVSEYYGESEQELLKVFESATQAAPS VVFIDELDAIAPARKEGGEQLSQRMVATLLNLMDGISRTDGVLVIAATNRPDSIEPAL RRPGRLGRELEIGVPSPKQRLDILHTLLSKMDHCISDMQVQQLAMATHGFVGADLASL CNEAALVCLRRYAKFKVSCQGLDSCGMPITYIGHSGHKMEGMECGSDLRDISISCSDS ASSCKTDLPDSAETVSQITASIQTGISDISEGMSLVKEKCLLRLAFEDFEKARVKVRP SAMREVILEVPKVNWEDVGGQREVKNQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGP PGCSKTLMARAVASKAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFD EIDSLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVDVTVIAATNRPDKIDSALLRP GRFDRLLYVGPPNKNDREDIFRIHLRKIPCNSDVSLKELAHLTEGCTGADISLICREA AVAALEESLDAEEVTMCHLKAAIRQARPSEIQLYQELSAKFERLVHSSTIEKTLGSQQ CSIRSTGLPFWKSTD" CDS join(33428375..33428662,33428781..33428939, 33429453..33430327,33430721..33430925,33431206..33431413, 33432006..33432505,33432733..33433029,33433430..>33433456) /locus_tag="TCM_016559" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cam interacting protein 111 isoform 3" /protein_id="EOY25152.1" /db_xref="Phytozome:POPTR_0006s03350.1" /db_xref="TAIR:AT3G56690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H8R9" /translation="MPSKSKKQSKMPSRQSNSDPSASPRTPSVSSLDSEVSEEVLRCS LEEVSRRYPSLIGKSAFIGRVSDVGLETRGCKIWLSESSMVASYLAPGSLVSVSLAAL KNEHSNGFPLSLVTDECAKTFVVDLANETAKEVGNYFALATVFPSCKVLKNGVRLSSN LSYTLGCPASGSTVFVYPIQSEFKTGLVSGRENAHNPNANYLSLHSCKQLHLELTSFK NTVNTSNDILPKMEFATEKTHGQYENGITSSPKTPLYQPKLSSPHSSQLASPLCEGSA SNFSKPNGLYVDSFDVKEILRDESSKKLLETCAASWLYSRNLLCGNIVAFPILSELCI FRVRGAGITNQDLKNGSHHSLPTQNLESMEHVDNAFVVDYETKVYLCFSSDLSSETLA ERPSPCLQLDLEEVETIMEHDISELGGLSQEYAVLKEIISSSVKNALSSFGLQTTKGV LLHGPPGTGKTSLARLCVRDAGVNLFYVNGPEIVSEYYGESEQELLKVFESATQAAPS VVFIDELDAIAPARKEGGEQLSQRMVATLLNLMDGISRTDGVLVIAATNRPDSIEPAL RRPGRLGRELEIGVPSPKQRLDILHTLLSKMDHCISDMQVQQLAMATHGFVGADLASL CNEAALVCLRRYAKFKVSCQGLDSCGMPITYIGHSGHKMEGMECGSDLRDISISCSDS ASSCKTDLPDSAETVSQITASIQTGISDISEGMSLVKEKCLLRLAFEDFEKARVKVRP SAMREVILEVPKVNWEDVGGQREVKNQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGP PGCSKTLMARAVASKAGLNFLAVKGPELFSKWVGESEKAVRSLFAKVCIKELMLL" CDS join(33428375..33428662,33428781..33428939, 33429453..33430327,33430721..33430925,33431206..33431413, 33432006..33432505,33432733..33433004,33433137..33433164) /locus_tag="TCM_016559" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Cam interacting protein 111 isoform 4" /protein_id="EOY25153.1" /db_xref="Phytozome:POPTR_0006s03350.1" /db_xref="TAIR:AT3G56690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H8R9" /translation="MPSKSKKQSKMPSRQSNSDPSASPRTPSVSSLDSEVSEEVLRCS LEEVSRRYPSLIGKSAFIGRVSDVGLETRGCKIWLSESSMVASYLAPGSLVSVSLAAL KNEHSNGFPLSLVTDECAKTFVVDLANETAKEVGNYFALATVFPSCKVLKNGVRLSSN LSYTLGCPASGSTVFVYPIQSEFKTGLVSGRENAHNPNANYLSLHSCKQLHLELTSFK NTVNTSNDILPKMEFATEKTHGQYENGITSSPKTPLYQPKLSSPHSSQLASPLCEGSA SNFSKPNGLYVDSFDVKEILRDESSKKLLETCAASWLYSRNLLCGNIVAFPILSELCI FRVRGAGITNQDLKNGSHHSLPTQNLESMEHVDNAFVVDYETKVYLCFSSDLSSETLA ERPSPCLQLDLEEVETIMEHDISELGGLSQEYAVLKEIISSSVKNALSSFGLQTTKGV LLHGPPGTGKTSLARLCVRDAGVNLFYVNGPEIVSEYYGESEQELLKVFESATQAAPS VVFIDELDAIAPARKEGGEQLSQRMVATLLNLMDGISRTDGVLVIAATNRPDSIEPAL RRPGRLGRELEIGVPSPKQRLDILHTLLSKMDHCISDMQVQQLAMATHGFVGADLASL CNEAALVCLRRYAKFKVSCQGLDSCGMPITYIGHSGHKMEGMECGSDLRDISISCSDS ASSCKTDLPDSAETVSQITASIQTGISDISEGMSLVKEKCLLRLAFEDFEKARVKVRP SAMREVILEVPKVNWEDVGGQREVKNQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGP PGCSKTLMARAVASKAGLNFLAVKGPELFSKWVGESENQLLVELDG" gene 33435893..33440125 /locus_tag="TCM_016561" /note="dbxref CacaoGD:Thecc1EG016561" mRNA join(33435893..33436136,33436312..33438662, 33439052..33439331,33439521..33439617,33439820..33440125) /locus_tag="TCM_016561" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="similar to AA sequence:Phytozome:GSVIVT01013113001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1278t9" CDS 33436391..33438631 /locus_tag="TCM_016561" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY25154.1" /db_xref="Phytozome:GSVIVT01013113001" /db_xref="TAIR:AT2G02150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TTT9" /translation="MGIWSYSKICLVQSGLLRDVVVHYKKCLLRVYYSASSALLLEDH VFDCSPEVVSVNNEVEELQVPRKTFEFCRNPRLTPFVVRVFKSLNWDIAREIRFNMAA KMYGFDHSMYAFRIIIHIFAMAGMQMEAHALLRDIVCYYKEVKTDMFELLLYLLDSPE HVHRSADVFNVLIKVFASNSMLENGIDVFVQAKKIGLEPNIMSCNFLLKCLVEANRGE FVRSLFEDMKNSGPSPNVYTYTIMMNFYCNGYCGRDVDVGQANNLLEDMERGGKNPSV VTYSTYIGGLCRVGCVELALDFIRKLCFGNQPINSFCYNAIIYGFCQKGEPYEGLKVL EEMKHCGISPDVHSYSILIDGFCKKGDCEKGINLIDEMIVNGMKPSLVTYTSLFHGLC KSGLADVSLNLFRNLANDGYEYDLAAYSVLLKGFCLQGDVDSAMELFEGMFSNSLIPT TNSFNRLIHGFCKMGLLDKALELFNIMLQSGVSPTIFTCNVIADGYCKAGHLEEALKL INEMHEFGIFPNSYTYNGIIKRLCMQSYSGKAWELLPQMIKKNILHNVHCNILMNGFA EQSKPKKALMLYARMLKLGFTRTTITHTILINIFSQRCKMYEAYSLFKDMIAKGLIPD TISYTSVIAGFCRVRDMKKAWALYTEMLRRGYSPNVVTYTCLIDGFCHIHRMDMANLL IDEMKRREINPDVVTYTALISGYRRLGDIDRAHELFAEMKSKGIVPDDAAYSALGEDN GMTTYN" gene complement(33439933..33443505) /locus_tag="TCM_016562" /note="dbxref CacaoGD:Thecc1EG016562" mRNA complement(join(33439933..33440187,33441140..33441416, 33441507..33441577,33441653..33441772,33442405..33442525, 33442808..33442962,33443102..33443191,33443297..33443464)) /locus_tag="TCM_016562" /product="Damaged DNA binding,exodeoxyribonuclease IIIs isoform 1" /inference="alignment:exonerate- protein:2:ricco:30054.m000817" /inference="similar to AA sequence:Phytozome:POPTR_0001s02150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05227t00001" mRNA complement(join(33441003..33441454,33441653..33441772, 33442405..33442525,33442808..33442962,33443102..33443191, 33443297..33443505)) /locus_tag="TCM_016562" /product="Damaged DNA binding,exodeoxyribonuclease IIIs isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09360.1.2" /inference="alignment:exonerate- protein:2:ricco:30054.m000817" /inference="similar to AA sequence:Phytozome:POPTR_0001s02150.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01008t00002; inference alignment:Newbler:10:TSA:cgbaP1_g05227t00001" CDS complement(join(33441167..33441454,33441653..33441772, 33442405..33442525,33442808..33442962,33443102..33443191, 33443297..33443404)) /locus_tag="TCM_016562" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Damaged DNA binding,exodeoxyribonuclease IIIs isoform 3" /protein_id="EOY25157.1" /db_xref="Phytozome:POPTR_0001s02150.1" /db_xref="TAIR:AT4G17760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7G8" /translation="MSSSALEAEAPDLVCQLDNVQGMVDALSAVRWKRHQDAVVELSE HGVVLIVEDTGCLQAKVYLQRELFIRYEYNAEGRPRFGVSLGLFVDCLNTFSLPGRSS MIEIQYPGPDMQLLVKSVDSLDACIYAEIRTRIPDTISWDYNFEPAGSTPLTFTVKSA ALKEAIDDLEWPGSSIQILLQPVPPCVTFKGEGHGDLQQINLVSSHLDLGRYKYKFLH ATTSNLPSSVIKDNRGSKLTIGRGGMLKVQHLVSVAKLATSHPQIDSARHQQPSRIAY IEFFVKPEVDEDTVHNS" CDS complement(join(33441167..33441416,33441507..33441577, 33441653..33441772,33442405..33442525,33442808..33442962, 33443102..33443191,33443297..33443404)) /locus_tag="TCM_016562" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Damaged DNA binding,exodeoxyribonuclease IIIs isoform 1" /protein_id="EOY25155.1" /db_xref="Phytozome:POPTR_0001s02150.1" /db_xref="TAIR:AT4G17760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7G8" /translation="MSSSALEAEAPDLVCQLDNVQGMVDALSAVRWKRHQDAVVELSE HGVVLIVEDTGCLQAKVYLQRELFIRYEYNAEGRPRFGVSLGLFVDCLNTFSLPGRSS MIEIQYPGPDMQLLVKSVDSLDACIYAEIRTRIPDTISWDYNFEPAGSTPLTFTVKSA ALKEAIDDLEWPGSSIQILLQPVPPCVTFKGEGHGDLQIDFMYYVNTDLLIAFHCDRQ VSYRYKYKFLHATTSNLPSSVIKDNRGSKLTIGRGGMLKVQHLVSVAKLATSHPQIDS ARHQQPSRIAYIEFFVKPEVDEDTVHNS" mRNA complement(join(<33441389..33441577,33441653..33441772, 33442405..33442525,33442808..33442962,33443102..33443191, 33443297..>33443484)) /locus_tag="TCM_016562" /product="Damaged DNA binding,exodeoxyribonuclease IIIs isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09360.1.2" /inference="alignment:exonerate- protein:2:ricco:30054.m000817" /inference="similar to AA sequence:ricco:30054.m000817" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc922t4; inference alignment:Newbler:10:TSA:cgbaP1_g05227t00001" CDS complement(join(<33441389..33441577,33441653..33441772, 33442405..33442525,33442808..33442962,33443102..33443191, 33443297..>33443482)) /locus_tag="TCM_016562" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30054.m000817" /codon_start=1 /product="Damaged DNA binding,exodeoxyribonuclease IIIs isoform 2" /protein_id="EOY25156.1" /db_xref="TAIR:AT4G17760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7G8" /translation="RSKWITGSFLVREENWRERENESEEEMSSSALEAEAPDLVCQLD NVQGMVDALSAVRWKRHQDAVVELSEHGVVLIVEDTGCLQAKVYLQRELFIRYEYNAE GRPRFGVSLGLFVDCLNTFSLPGRSSMIEIQYPGPDMQLLVKSVDSLDACIYAEIRTR IPDTISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQILLQPVPPCVTFKGE GHGDLQIDFMYYVNTDLLIAFHCDRQVSYRYVYFVLILYILFTSSLQQINLVSSHLDL GRYKYKFLHAT" mRNA complement(join(<33441509..33441577,33441653..33441772, 33442405..33442483,33442808..33442962,33443102..33443191, 33443297..>33443484)) /locus_tag="TCM_016562" /product="Damaged DNA binding,exodeoxyribonuclease IIIs isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09360.1.2" /inference="alignment:exonerate- protein:2:ricco:30054.m000817" /inference="similar to AA sequence:ricco:30054.m000817" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc922t2; inference alignment:Newbler:10:TSA:cgbaP1_g05227t00001" mRNA complement(join(33441509..33441573,33441653..33441772, 33442405..33442525,33442808..33442962,33443102..33443191, 33443297..33443484)) /locus_tag="TCM_016562" /product="Damaged DNA binding,exodeoxyribonuclease IIIs isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09360.1.2" /inference="alignment:exonerate- protein:2:ricco:30054.m000817" /inference="similar to AA sequence:ricco:30054.m000817" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc922t1; inference alignment:Newbler:10:TSA:cgbaP1_g05227t00001" CDS complement(join(<33441509..33441577,33441653..33441772, 33442405..33442483,33442808..33442962,33443102..33443191, 33443297..>33443482)) /locus_tag="TCM_016562" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30054.m000817" /codon_start=1 /product="Damaged DNA binding,exodeoxyribonuclease IIIs isoform 5" /protein_id="EOY25159.1" /db_xref="TAIR:AT4G17760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7G8" /translation="RSKWITGSFLVREENWRERENESEEEMSSSALEAEAPDLVCQLD NVQGMVDALSAVRWKRHQDAVVELSEHGVVLIVEDTGCLQAKVYLQRELFIRYEYNAE GRPRFGVSLGLFVDCLNTFSLPGRSSMIEIQYPGPDMQLLVKTRIPDTISWDYNFEPA GSTPLTFTVKSAALKEAIDDLEWPGSSIQILLQPVPPCVTFKGEGHGDLQIDFMYYVN TDLLIAFHCDRQVSY" CDS complement(join(33441556..33441573,33441653..33441772, 33442405..33442525,33442808..33442962,33443102..33443191, 33443297..33443404)) /locus_tag="TCM_016562" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30054.m000817" /codon_start=1 /product="Damaged DNA binding,exodeoxyribonuclease IIIs isoform 4" /protein_id="EOY25158.1" /db_xref="TAIR:AT4G17760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7G8" /translation="MSSSALEAEAPDLVCQLDNVQGMVDALSAVRWKRHQDAVVELSE HGVVLIVEDTGCLQAKVYLQRELFIRYEYNAEGRPRFGVSLGLFVDCLNTFSLPGRSS MIEIQYPGPDMQLLVKSVDSLDACIYAEIRTRIPDTISWDYNFEPAGSTPLTFTVKSA ALKEAIDDLEWPGSSIQILLQPVPPCVTFKGEGHGDLQTSCIM" mobile_element complement(33442102..33442165) /note="source:CACAO_M_S_E85656_F79_scaffold_7 2594 2659" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33444547..33444772 /note="source:CACAO_MITE_S174_scaffold_7 172 404" /mobile_element_type="transposon:TIR/MITE" mobile_element 33444668..33444787 /note="source:scaffold_4_CACTA_0483 6708 6834" /mobile_element_type="transposon:TIR/CACTA" gene 33444823..33451872 /locus_tag="TCM_016563" /note="dbxref CacaoGD:Thecc1EG016563" mRNA join(33444823..33445549,33448951..33450269, 33451147..33451283,33451584..33451872) /locus_tag="TCM_016563" /product="Heat shock transcription factor A1D isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g13400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025482t1" /inference="similar to AA sequence:ricco:30054.m000802" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05314t00001" mRNA join(33444977..33445549,33448951..33451170) /locus_tag="TCM_016563" /product="Heat shock transcription factor A1D isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g13400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025482t1" /inference="similar to AA sequence:ricco:30054.m000802" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc824t3; alternateUTRof:Thecc1EG016563t1; inference alignment:Newbler:10:TSA:cgbaB_g05314t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11532t2" CDS join(33445241..33445549,33448951..33450228) /locus_tag="TCM_016563" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30054.m000802; paralog of Thecc1EG025482t1" /codon_start=1 /product="Heat shock transcription factor A1D isoform 1" /protein_id="EOY25160.1" /db_xref="TAIR:AT1G32330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU54" /translation="MDGMSSSSNGQNDASTTGGGAQTAAQPQPTPQPVAVQSANAPPP FLSKTYDMVDDPATDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNT YGFRKVDPDRWEFANEGFLRGQKHLLRNISRRKPAHGHGHQQTQQSHGQSSSVGACVE VGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQTVVQRLQGMEQRQQQMMSF LAKAVQSPGFLAQFVQQQNESNRRITEANKKRRLKQDGIIDNEHSASSDGQIVKYQPM MNEAKALLRQFMKGDASPRMDSFNNNNENFLIGDGLSSSSGIDGGNSSIRVSGVTLQE VPPTSGQSTYIPATSEISGHCPSTAITEVQSSPSETTSEKITTAQFPDVSALAGVQKP PSISVSQTDIIMPELSQIPDMVPESIVDIPTENYMGSETGNGGFIDPATFVVDGSVPI ELDDIAPDPDIDALLDNSTFWADLLVHSPLPDDIESPSMDGKSKGNEGQPIDNGWDKS QHMDKLTEQMGLLRSDNKGV" CDS join(33445241..33445549,33448951..33450228) /locus_tag="TCM_016563" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30054.m000802; paralog of Thecc1EG025482t1" /codon_start=1 /product="Heat shock transcription factor A1D isoform 1" /protein_id="EOY25161.1" /db_xref="TAIR:AT1G32330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU54" /translation="MDGMSSSSNGQNDASTTGGGAQTAAQPQPTPQPVAVQSANAPPP FLSKTYDMVDDPATDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNT YGFRKVDPDRWEFANEGFLRGQKHLLRNISRRKPAHGHGHQQTQQSHGQSSSVGACVE VGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQTVVQRLQGMEQRQQQMMSF LAKAVQSPGFLAQFVQQQNESNRRITEANKKRRLKQDGIIDNEHSASSDGQIVKYQPM MNEAKALLRQFMKGDASPRMDSFNNNNENFLIGDGLSSSSGIDGGNSSIRVSGVTLQE VPPTSGQSTYIPATSEISGHCPSTAITEVQSSPSETTSEKITTAQFPDVSALAGVQKP PSISVSQTDIIMPELSQIPDMVPESIVDIPTENYMGSETGNGGFIDPATFVVDGSVPI ELDDIAPDPDIDALLDNSTFWADLLVHSPLPDDIESPSMDGKSKGNEGQPIDNGWDKS QHMDKLTEQMGLLRSDNKGV" mobile_element complement(33450105..33450435) /note="source:scaffold_2_CACTA_0281 5478 5816" /mobile_element_type="transposon:TIR/CACTA" gene 33451263..33455679 /locus_tag="TCM_016564" /note="dbxref CacaoGD:Thecc1EG016564" mRNA join(33451263..33451283,33451584..33453259, 33455645..33455679) /locus_tag="TCM_016564" /product="Mitogen-activated protein kinase kinase 5, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013003t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02130.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc492t32_C2" CDS 33452043..33453047 /locus_tag="TCM_016564" /note="paralog of Thecc1EG013003t1" /codon_start=1 /product="Mitogen-activated protein kinase kinase 5, putative" /protein_id="EOY25162.1" /db_xref="Phytozome:POPTR_0001s02130.1" /db_xref="TAIR:AT1G32320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU55" /translation="MTLVRERRHQQGLRLSLPPPLPAADFRQRTHYAALLSAIGPTSP DIESLSDLEKLSVIGHGNGGTVYKVRNRKSSSVYALKVLRFDQNAAIIRHQAACEAEI LKRVDSQFVVKCHAVFDAIGGELCFVMEYMERGSLYDELSVRINFPEDVISGVAQRVL RGLHYLHGMQIVHGDIKPSNLLINGKGDVKIADFGVSKIVVGTHNACDTCMGTCAYMS PERVDPERWNGCDADGFAGDVWSLGVVVLECFVGHYPLIGLGEKPDWAALMCAICFGE RLEMPETASPEFRSFVRRCLEKEWRKRGTVDELLGHPFVNRSFGGSSNEGFIDFALHH " gene complement(33453366..33455758) /locus_tag="TCM_016565" /note="dbxref CacaoGD:Thecc1EG016565" mRNA complement(join(33453366..33454288,33454674..33454784, 33455464..33455758)) /locus_tag="TCM_016565" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02120.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02120.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc506t14_C1" CDS complement(join(33454227..33454288,33454674..33454784, 33455464..33455611)) /locus_tag="TCM_016565" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25163.1" /db_xref="Phytozome:POPTR_0001s02120.2" /db_xref="TAIR:AT1G32310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZI1" /translation="MNSSSPANSSISTTAILGGGASTTNAGLEDFHFPSDLISIQDRK DEAMRVLKSDLMAALNEEVKSLDEDNWKFEGPRSRIHLISRPGGLLQKQMEFTKNRSM APPK" gene 33455953..33458154 /locus_tag="TCM_016566" /note="dbxref CacaoGD:Thecc1EG016566" mRNA join(33455953..33456097,33456533..33456650, 33456875..33457244,33457360..33457526,33457725..33458154) /locus_tag="TCM_016566" /product="Phosphatidylinositol-glycan biosynthesis class X protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09390.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09390.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11521t1" CDS join(33456540..33456650,33456875..33457244, 33457360..33457526,33457725..33458018) /locus_tag="TCM_016566" /codon_start=1 /product="Phosphatidylinositol-glycan biosynthesis class X protein, putative" /protein_id="EOY25164.1" /db_xref="Phytozome:POPTR_0003s09390.1" /db_xref="TAIR:AT5G46850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PIK5" /translation="MATRQYNRLCFYQKLAILWMFFSGAVSCMHVFSSSSEVEMNGPP DSQNSDARNYIMKSYFDKYENLHDSSFEDFMAHELSSGLCEVFPDKLNINVRLSVLEL SLLGEGSHRHLSSSIRLQIEAESIAKLPDHFCEVIIIQRLPLGVFADPFELQHLHERK VFTNIAVFGDTDLELPSFRSNRSVVEVHMDAGSNNLSGWNNGLEINVQFPLHARYQPL DESGYSIVEIGEPDVLMSCSMEGKHDKQSCLYMSPHDSAKSRTGTVAWRIPSGKKAHA GFVSVVTFGTAFLSTLSIVLTSICCSGVNVSKNLKQS" gene complement(33458246..33461658) /locus_tag="TCM_016567" /note="dbxref CacaoGD:Thecc1EG016567" mRNA complement(join(33458246..33458699,33458986..33459086, 33459174..33459331,33459523..33459597,33459867..33460006, 33460442..33460535,33460927..33461658)) /locus_tag="TCM_016567" /product="Syntaxin/t-SNARE family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025481t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400029308" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc492t41" CDS complement(join(33458634..33458699,33458986..33459086, 33459174..33459331,33459523..33459597,33459867..33460006, 33460442..33460535,33460927..33461114)) /locus_tag="TCM_016567" /note="paralog of Thecc1EG025481t1" /codon_start=1 /product="Syntaxin/t-SNARE family protein" /protein_id="EOY25165.1" /db_xref="Phytozome:PGSC0003DMP400029308" /db_xref="TAIR:AT5G46860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39233" /translation="MSFQDLEAGRPFASRQSLINGKQDATQAVASGIFQINTAVSTFQ RLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASETDHRAEVSASKKITDA KLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQTVLPSSYTAGEIDVGSDKSAEQRAL LVESRRQEVLLLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTII DDIGTHIENSQAATGQAKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA" gene 33463579..33466954 /locus_tag="TCM_016568" /note="dbxref CacaoGD:Thecc1EG016568" mRNA join(33463579..33464141,33464823..33464982, 33465063..33465138,33465713..33465796,33465874..33466954) /locus_tag="TCM_016568" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025479t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02090.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15018t00001" mRNA join(33463696..33463972,33464879..33464982, 33465063..33465138,33465713..33465796,33465874..33466905) /locus_tag="TCM_016568" /product="RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025479t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s02090.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc294t26; inference alignment:Newbler:10:TSA:cgbaL_g15018t00001" CDS join(33463964..33464141,33464823..33464982, 33465063..33465138,33465713..33465796,33465874..33466446) /locus_tag="TCM_016568" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025479t1" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY25166.1" /db_xref="Phytozome:POPTR_0001s02090.1" /db_xref="TAIR:AT4G17720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NM69" /translation="MSSVSSFPFVLIASSWASFGFDSGRTLFLFSLSVLSLQSEVGFL FAVCLNLSLFLYLFFAWLLSRQDSRSSRFMFSLQIKTVKVSNVSLGATQRDVKEFFSF SGDIEYVEMQSDNEQSQVAYVTFKDSQGAETAVLLTGAIIVDLSVSITLAPDYKLPPA AFLPPSAIQNKTPGGGDSAIRKAEDVVSGMLAKGFILGKDAVNKAKTFDEKHQLTSTA SAKVASFDKKIGFTEKITAGTTVVSGKVREVDQKFQVSEKTKSAFAAAEQKVSSAGSA IMKNRYVFTGASWVTGAFNKVAKAAGDVGQKTKEKVGEAEEERKRKVVDDFAQIHLSE SPKASAPSEQPLSKPAPAQGLI" CDS join(33463964..33463972,33464879..33464982, 33465063..33465138,33465713..33465796,33465874..33466446) /locus_tag="TCM_016568" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025479t1" /codon_start=1 /product="RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2" /protein_id="EOY25167.1" /db_xref="Phytozome:POPTR_0001s02090.1" /db_xref="TAIR:AT4G17720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NM69" /translation="MSSIKTVKVSNVSLGATQRDVKEFFSFSGDIEYVEMQSDNEQSQ VAYVTFKDSQGAETAVLLTGAIIVDLSVSITLAPDYKLPPAAFLPPSAIQNKTPGGGD SAIRKAEDVVSGMLAKGFILGKDAVNKAKTFDEKHQLTSTASAKVASFDKKIGFTEKI TAGTTVVSGKVREVDQKFQVSEKTKSAFAAAEQKVSSAGSAIMKNRYVFTGASWVTGA FNKVAKAAGDVGQKTKEKVGEAEEERKRKVVDDFAQIHLSESPKASAPSEQPLSKPAP AQGLI" gene 33467253..33469907 /locus_tag="TCM_016569" /note="dbxref CacaoGD:Thecc1EG016569" mRNA join(33467253..33467933,33468078..33468207, 33469237..33469907) /locus_tag="TCM_016569" /product="Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g29410.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019058001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11288t00001" CDS join(33467481..33467933,33468078..33468207, 33469237..33469457) /locus_tag="TCM_016569" /codon_start=1 /product="Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain" /protein_id="EOY25168.1" /db_xref="Phytozome:GSVIVT01019058001" /db_xref="TAIR:AT4G23620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JPA3" /translation="MATLIHRTLSNRTLHLRFFSQAALALDKSSLTSPSPSPSPSSPF PLTYLEGFPKPDPKYAETILAIPRATSGKSIAAKERKVGRLPSIIFEQEDGQHGGNKR LISVQINQIRKLVKHLGQSFFLSRLFDLEVRSEFGTGDLIEKVRVLPRKLHLHAGTDA PLNVTFIRAPSHALLKVDVPVVFRGEDVSPGLRKGSYLNIIKRTVKFRCPADVVPPYI DVDLSELDVGQKLVMGDLEVHPALKLIQSKDEPVVKIMGARVSDQQRKK" gene 33470243..33471339 /locus_tag="TCM_016570" /note="dbxref CacaoGD:Thecc1EG016570" mRNA join(33470243..33470522,33470688..33470817, 33470909..33471339) /locus_tag="TCM_016570" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3670t1" CDS join(33470444..33470522,33470688..33470817, 33470909..33471134) /locus_tag="TCM_016570" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25169.1" /translation="MQMKYQPRKQNNHSSPVCRGRENQSWGNHYVKYETSLSTSRKTE KTLNVSNGESFIQVRFRGRPAAHFILWAAVLLQGGRVCDCLPCCLPCPCNTDDSTAAA TGVVREGSTCSTHGDCAGISCKSGFGFCADSICTCSIGNTRY" gene 33472113..33474126 /locus_tag="TCM_016571" /note="dbxref CacaoGD:Thecc1EG016571" mRNA join(33472113..33472455,33472542..33472754, 33472834..33472884,33473188..33473246,33473373..33474126) /locus_tag="TCM_016571" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS join(33472351..33472455,33472542..33472754, 33472834..33472884,33473188..33473246,33473373..33473727) /locus_tag="TCM_016571" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25170.1" /translation="MQDILMLSTRFWKQKICAAHQHDKTLICTLCERYKPRNERYVEL GSGGWQVCHDCCSTAVNSAEKLKTLIGKVQALFRESKLVVGKDIPIFLVTADELGKFQ NSHEISDAATIIPMRDIVIEAVEKWAVISIPNDASVVKPPRYEDVGEEVREGLCHMMA YKWLEFSKSDVEGCFCLTDEQSEYAKDFRTYLKQKMKEARYRVADIQRFMEAKHEADE RGQAAPETIDGIDGFKNVMHAVDKYGLAYTLDFVAHKKTLPK" gene 33474943..33475721 /locus_tag="TCM_016572" /note="dbxref CacaoGD:Thecc1EG016572" mRNA join(33474943..33475290,33475380..33475721) /locus_tag="TCM_016572" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11544t1" CDS join(33475072..33475290,33475380..33475577) /locus_tag="TCM_016572" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25171.1" /translation="MFRQCLRVLQNLGHPDPTLLVGVTFLFHTMEVPLAALLMLMGFI LFSMASDMNMQHLEDLRRFGNLLVWFARQCFSAVEGVDIRVWLLALLLPRCGLGAELT IMAMLVGCIVFLLILIVKLDKDLVEALFHLHQASSQ" gene 33476143..33477387 /locus_tag="TCM_016573" /note="dbxref CacaoGD:Thecc1EG016573" mRNA join(33476143..33476261,33476355..33477387) /locus_tag="TCM_016573" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1507t1" CDS join(33476204..33476261,33476355..33476518) /locus_tag="TCM_016573" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25172.1" /translation="MDLKLVRLAFVVTVLIISSGTPFSKVPAVEGRICRSNADCPPCA NGPSVCDLGICFCLRGGLAPPALILSKFP" gene complement(33476642..33477528) /locus_tag="TCM_016574" /note="dbxref CacaoGD:Thecc1EG016574" mRNA complement(join(33476642..33477045,33477320..33477528)) /locus_tag="TCM_016574" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage" CDS complement(join(33476893..33477045,33477320..33477388)) /locus_tag="TCM_016574" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25173.1" /translation="MGGGIATILNFFIHLFQRSLLWQIMLLGNGASGLRHHEWTLKKP SRENFTGCLVFFFVGWNLAATKTLYPTIT" gene complement(33478489..33479397) /locus_tag="TCM_016575" /note="dbxref CacaoGD:Thecc1EG016575" mRNA complement(join(33478489..33478810,33478912..33478950, 33479050..>33479321)) /locus_tag="TCM_016575" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29682.m000594" /inference="similar to AA sequence:Phytozome:POPTR_0003s09420.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is weak, protein is partial5; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc671t1; inference alignment:Newbler:10:TSA:cgbaP1_g09979t00001" mRNA complement(join(33478514..33478795,33478906..33478950, 33479050..33479397)) /locus_tag="TCM_016575" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29682.m000594" /inference="similar to AA sequence:Phytozome:POPTR_0003s09420.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09979t00001; inference alignment:Newbler:10:TSA:cgbaP1_g09979t00001" CDS complement(join(33478653..33478795,33478906..33478950, 33479050..33479332)) /locus_tag="TCM_016575" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25174.1" /db_xref="Phytozome:POPTR_0003s09420.1" /db_xref="TAIR:AT2G35470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PCP0" /translation="MQRQSLGSPSSKLHIHGGEESSQAEDPKRRVIIDDDDADRKDSK PRRLSFSPTSSPSSSLTSPPKPEKFIHLIPVLTLLCFLILYLSSHSPSQSDLAHFNGF KHSSKHLDSREISDVGRFIELRRGDVLAIRSLRNLQELDKYVPKSRPHRKIADF" CDS complement(join(33478653..33478810,33478912..33478950, 33479050..>33479320)) /locus_tag="TCM_016575" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY25175.1" /db_xref="Phytozome:POPTR_0003s09420.1" /db_xref="TAIR:AT2G35470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PCP0" /translation="SLGSPSSKLHIHGGEESSQAEDPKRRVIIDDDDADRKDSKPRRL SFSPTSSPSSSLTSPPKPEKFIHLIPVLTLLCFLILYLSSHSPSQSDLAHFNGFKHSS KLSLFVDSREISDVGRFIELRRGDVLAIRSLRNLQELDKYVPKSRPHRKIADF" mobile_element 33480286..33480484 /note="source:CACAO_Mutator_E39_scaffold_1 5583 5776" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(33480935..33481136) /note="source:scaffold_4_CACTA_0482 6105 6323" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33481340..33481928 /note="source:CACAO_on_E445_scaffold_2 8 656" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 33482348..33484556 /locus_tag="TCM_016576" /note="dbxref CacaoGD:Thecc1EG016576" mRNA join(33482348..33482671,33483120..33483179, 33483266..33483377,33483451..33483482,33483707..33484556) /locus_tag="TCM_016576" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30068.m002641" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1413t1_C2" CDS join(33482541..33482671,33483120..33483179, 33483266..33483377,33483451..33483482,33483707..33484175) /locus_tag="TCM_016576" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25176.1" /translation="MVLWEITLGTAYFLGLKRTYRLALRIQRRIISPEHPRIRQFVQR NLRLLAALQKEIRRVRVCCLRQVSSYALMLPLGPVTWGLFALPTESRMDMGIRIQGMF ATFLMGEMHLRTRAAFDVALKVHQNIQQRDLEVGRNLGNWILRWLDKMKPSAQIRVPP QQKPHHHAGNAKMNISKQVINSHPLKTHGSIQTPRNHEADRHLFSTSTYMWSKSLPTI AMMMRLPTAAGNMIQYRHLSINGPDTLRLNYTRGEGVIRKDIMQWMLHK" gene 33484647..33486131 /locus_tag="TCM_016577" /note="dbxref CacaoGD:Thecc1EG016577" mRNA join(33484647..33484979,33485145..33485265, 33485362..33486131) /locus_tag="TCM_016577" /product="Dolichol phosphate-mannose biosynthesis regulatory protein-related" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g04730.1" /inference="similar to AA sequence:Phytozome:Glyma10g04730.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage" CDS join(33485176..33485265,33485362..33485514) /locus_tag="TCM_016577" /codon_start=1 /product="Dolichol phosphate-mannose biosynthesis regulatory protein-related" /protein_id="EOY25177.1" /db_xref="Phytozome:Glyma10g04730.1" /db_xref="TAIR:AT1G74340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU62" /translation="MELADRVVGFLLSFISLSIFTYYTFWVIILPFVDSDNFIHKYFL PQEYAILIPVCAGVVLLCLLCMFVGFVMLKSKKKKA" gene complement(33486411..33487370) /locus_tag="TCM_016579" /note="dbxref CacaoGD:Thecc1EG016579" mRNA complement(join(33486411..33486656,33486820..33487370)) /locus_tag="TCM_016579" /product="Calcium-binding EF-hand family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014474t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400026045" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11554t1" CDS complement(33486846..33487337) /locus_tag="TCM_016579" /note="paralog of Thecc1EG014474t1" /codon_start=1 /product="Calcium-binding EF-hand family protein" /protein_id="EOY25178.1" /db_xref="Phytozome:PGSC0003DMP400026045" /db_xref="TAIR:AT1G32250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQN4" /translation="MSDKQPAKLNDEQIAELRDIFRSFDRNNDGSLTQLELGSLLRSL GLKPSPDQVEALIQKADTNSNGLVEFSEFVALVAPELLSEKSPYSEEQLKQLFKMFDR DGNGFITAAELAHSMAKLGHALTVEELTGMIKEADTDGDGRISFEEFAQAITSAAFDN SWA" gene 33488283..33488845 /locus_tag="TCM_016580" /note="dbxref CacaoGD:Thecc1EG016580" mRNA 33488283..33488845 /locus_tag="TCM_016580" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc451t9_C1" CDS 33488481..33488681 /locus_tag="TCM_016580" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25179.1" /translation="MELSSNLSNGKEKIKSDKAAKSACDESQKGFNKKLKKVGESRDG IIDWLEPKCWRQGVAYAFFNVG" gene complement(33488597..33493595) /locus_tag="TCM_016581" /note="dbxref CacaoGD:Thecc1EG016581" mRNA complement(join(33488597..33489806,33490206..33490401, 33490867..33491723,33493516..33493595)) /locus_tag="TCM_016581" /product="Plastid-lipid associated protein PAP / fibrillin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013072001" /inference="similar to AA sequence:Phytozome:POPTR_0001s02040.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:PASA:2:TSA:puevd3b016020t1a2; alternateUTRof:Thecc1EG016581t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10317t2" mRNA complement(join(33488696..33489021,33489491..33489806, 33490206..33490401,33490867..33491723,33493516..33493595)) /locus_tag="TCM_016581" /product="Plastid-lipid associated protein PAP / fibrillin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013072001" /inference="similar to AA sequence:Phytozome:POPTR_0001s02040.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10317t2" mRNA complement(join(33489285..33490401,33490867..33491571)) /locus_tag="TCM_016581" /product="Plastid-lipid associated protein PAP / fibrillin family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013072001" /inference="similar to AA sequence:TAIR:AT2G35490.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc451t4_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10317t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc451t3_C2" CDS complement(join(33489495..33489806,33490206..33490401, 33490867..33491462)) /locus_tag="TCM_016581" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Plastid-lipid associated protein PAP / fibrillin family protein isoform 1" /protein_id="EOY25180.1" /db_xref="Phytozome:POPTR_0001s02040.1" /db_xref="TAIR:AT2G35490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KU5" /translation="MALLFTAHPSSLFLSQSPRSSLSQSPKPVSLSFSFPTKPHKVFR FSSLVSFSSSQPDPTPEPDSDPKPTPLSSITDEWGEKTELGSEPEPTKLPDSDPPTNE DEWEEQYAEMGNGSAAAAQSAEAAVEEEEEEEDGFDSRIADLKRCLVDTVYGTELGFR TGPEVRAEVLELVNQLEAVNPTPAPVEATQLLDGYWVLLYTASSELLPLLAAGSTPLL KVKSISQTIDTERLSIVNSTTLASPFVNFSFSASAAFEVRTPSRIQVEFKEGTLQPPE IKPSIDLPADVDVFGQKISLLPVQQSLNPLQELVANISTAISGQPPLKIPIPGERSGS WLLITYLDEDLRISRGDGGLFVLARQGSPLLEQ" CDS complement(join(33489495..33489806,33490206..33490401, 33490867..33491462)) /locus_tag="TCM_016581" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Plastid-lipid associated protein PAP / fibrillin family protein isoform 1" /protein_id="EOY25181.1" /db_xref="Phytozome:POPTR_0001s02040.1" /db_xref="TAIR:AT2G35490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KU5" /translation="MALLFTAHPSSLFLSQSPRSSLSQSPKPVSLSFSFPTKPHKVFR FSSLVSFSSSQPDPTPEPDSDPKPTPLSSITDEWGEKTELGSEPEPTKLPDSDPPTNE DEWEEQYAEMGNGSAAAAQSAEAAVEEEEEEEDGFDSRIADLKRCLVDTVYGTELGFR TGPEVRAEVLELVNQLEAVNPTPAPVEATQLLDGYWVLLYTASSELLPLLAAGSTPLL KVKSISQTIDTERLSIVNSTTLASPFVNFSFSASAAFEVRTPSRIQVEFKEGTLQPPE IKPSIDLPADVDVFGQKISLLPVQQSLNPLQELVANISTAISGQPPLKIPIPGERSGS WLLITYLDEDLRISRGDGGLFVLARQGSPLLEQ" mRNA complement(join(33489778..33489806,33489900..33489991, 33490206..33490401,33490867..33491571)) /locus_tag="TCM_016581" /product="Plastid-lipid associated protein PAP / fibrillin family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013072001" /inference="similar to AA sequence:TAIR:AT2G35490.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc451t3_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc451t3_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10317t2" mRNA complement(join(33489778..33489806,33489900..33490401, 33490867..33491571)) /locus_tag="TCM_016581" /product="Plastid-lipid associated protein PAP / fibrillin family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013072001" /inference="similar to AA sequence:TAIR:AT2G35490.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc451t7_C2; alternateUTRof:Thecc1EG016581t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10317t2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc451t3_C2" CDS complement(join(33489959..33489991,33490206..33490401, 33490867..33491462)) /locus_tag="TCM_016581" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Plastid-lipid associated protein PAP / fibrillin family protein isoform 3" /protein_id="EOY25182.1" /db_xref="TAIR:AT2G35490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KU5" /translation="MALLFTAHPSSLFLSQSPRSSLSQSPKPVSLSFSFPTKPHKVFR FSSLVSFSSSQPDPTPEPDSDPKPTPLSSITDEWGEKTELGSEPEPTKLPDSDPPTNE DEWEEQYAEMGNGSAAAAQSAEAAVEEEEEEEDGFDSRIADLKRCLVDTVYGTELGFR TGPEVRAEVLELVNQLEAVNPTPAPVEATQLLDGYWVLLYTASSELLPLLAAGSTPLL KVKSISQTIDTERLSIVNSTTLASPFVNFSFSASAAFEVRTPSRIQWDKPMRRKKF" CDS complement(join(33489984..33490401,33490867..33491462)) /locus_tag="TCM_016581" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Plastid-lipid associated protein PAP / fibrillin family protein isoform 4" /protein_id="EOY25183.1" /db_xref="TAIR:AT2G35490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KU5" /translation="MALLFTAHPSSLFLSQSPRSSLSQSPKPVSLSFSFPTKPHKVFR FSSLVSFSSSQPDPTPEPDSDPKPTPLSSITDEWGEKTELGSEPEPTKLPDSDPPTNE DEWEEQYAEMGNGSAAAAQSAEAAVEEEEEEEDGFDSRIADLKRCLVDTVYGTELGFR TGPEVRAEVLELVNQLEAVNPTPAPVEATQLLDGYWVLLYTASSELLPLLAAGSTPLL KVKSISQTIDTERLSIVNSTTLASPFVNFSFSASAAFEVRTPSRIQVNLKLNLTGCLS LICLESSLTTLQKDKKFITQHRTNLFRKVSFNTSRNCSPLEISDVGVNLMLLTILNYL TVG" CDS complement(join(33489984..33490401,33490867..33491462)) /locus_tag="TCM_016581" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Plastid-lipid associated protein PAP / fibrillin family protein isoform 4" /protein_id="EOY25184.1" /db_xref="TAIR:AT2G35490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KU5" /translation="MALLFTAHPSSLFLSQSPRSSLSQSPKPVSLSFSFPTKPHKVFR FSSLVSFSSSQPDPTPEPDSDPKPTPLSSITDEWGEKTELGSEPEPTKLPDSDPPTNE DEWEEQYAEMGNGSAAAAQSAEAAVEEEEEEEDGFDSRIADLKRCLVDTVYGTELGFR TGPEVRAEVLELVNQLEAVNPTPAPVEATQLLDGYWVLLYTASSELLPLLAAGSTPLL KVKSISQTIDTERLSIVNSTTLASPFVNFSFSASAAFEVRTPSRIQVNLKLNLTGCLS LICLESSLTTLQKDKKFITQHRTNLFRKVSFNTSRNCSPLEISDVGVNLMLLTILNYL TVG" mobile_element 33494909..33495006 /note="source:scaffold_5_CACTA_0596 1711 1813" /mobile_element_type="transposon:TIR/CACTA" gene 33494923..33500703 /locus_tag="TCM_016582" /note="dbxref CacaoGD:Thecc1EG016582" mRNA join(33494923..33495121,33495664..33495838, 33495959..33496125,33496375..33496492,33497016..33497198, 33497350..33497826,33497909..33498007,33498095..33498313, 33498443..33498611,33498716..33498984,33499076..33499171, 33499300..33500703) /locus_tag="TCM_016582" /product="Homeobox-leucine zipper protein HDG5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004266" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044944t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09470.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc136t14" mRNA join(33495097..33495121,33495664..33495838, 33496375..33496492,33497016..33497198,33497350..33497826, 33497909..33498007,33498095..33498313,33498443..33498611, 33498716..33498984,33499076..33499171,33499300..33500295) /locus_tag="TCM_016582" /product="Homeobox-leucine zipper protein HDG5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004266" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044944t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09470.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc136t11; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc136t14" CDS join(33495707..33495838,33495959..33496125, 33496375..33496492,33497016..33497198,33497350..33497826, 33497909..33498007,33498095..33498313,33498443..33498611, 33498716..33498984,33499076..33499171,33499300..33499767) /locus_tag="TCM_016582" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG044944t1" /codon_start=1 /product="Homeobox-leucine zipper protein HDG5 isoform 1" /protein_id="EOY25185.1" /db_xref="Phytozome:POPTR_0003s09470.1" /db_xref="TAIR:AT5G46880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZI9" /translation="MYGDCQVISSMGGNVVSSETLFSSPIQNPNFNFLPFQPLPPMIP KEENGLLLRGKEEMDSGSGSEQVEEKSGNEQESTEQPPKKKRYHRHTARQIQEMEAVF KECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENESLKNE FYRLQAELSKLVCPNCGGPAVPGGISFEELRIENARLREELERVCAIASRYIGRPIQT MGAAPALMPPSLDLDMNMYPRHFTEPMASCTEMMPVPMLPETASFPENNLVLVEEEKT VAMELAMSSMDELVKMCRTNEPLWIRNNENGRELLNLEEHARMFPWAPSNLKQRSTEF RTEAGRDSAVVIMNSVTLVDAFLDANKWTELFPSIVARAKTVQVVSAGVSGTNGSLQL MYAELQVLSPLVPTREAYFLRYCQQQNLDDETYWAIVDFPIDGFHNNLQASFPLYRRR PSGCLIQDMPNGYSRVTWVEHAEIEEKPVHQIFSHFVYNGMAFGAHRWLAVLERQCER VASLMARNITDLGVIPSPEARKNLMRLAQRMIRTFCVNISTSSGQLWTALPDSADDTV RITTRKVTEAGQPNGLILCAVSTTWLPYPHDQVFDLLRDERSRSQLEVLSNGNALHEV AHIANGAHPGNCISLLRINVASNSSQHVELMLQESCTDRSGSLVVYSTVDVDSVQLAM SGEDPSCIPLLPLGFFITPVELIRDASDDQGKSVPPSEEANGHISGSLLTVGLQVLAS TVPSAKINLSSIAAINNHLCTTVHQITAALSSSTAPSCPDNGIGVLGSCTEPASAPEK " CDS join(33496415..33496492,33497016..33497198, 33497350..33497826,33497909..33498007,33498095..33498313, 33498443..33498611,33498716..33498984,33499076..33499171, 33499300..33499767) /locus_tag="TCM_016582" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG044944t1" /codon_start=1 /product="Homeobox-leucine zipper protein HDG5 isoform 2" /protein_id="EOY25186.1" /db_xref="Phytozome:POPTR_0003s09470.1" /db_xref="TAIR:AT5G46880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZI9" /translation="MKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENESL KNEFYRLQAELSKLVCPNCGGPAVPGGISFEELRIENARLREELERVCAIASRYIGRP IQTMGAAPALMPPSLDLDMNMYPRHFTEPMASCTEMMPVPMLPETASFPENNLVLVEE EKTVAMELAMSSMDELVKMCRTNEPLWIRNNENGRELLNLEEHARMFPWAPSNLKQRS TEFRTEAGRDSAVVIMNSVTLVDAFLDANKWTELFPSIVARAKTVQVVSAGVSGTNGS LQLMYAELQVLSPLVPTREAYFLRYCQQQNLDDETYWAIVDFPIDGFHNNLQASFPLY RRRPSGCLIQDMPNGYSRVTWVEHAEIEEKPVHQIFSHFVYNGMAFGAHRWLAVLERQ CERVASLMARNITDLGVIPSPEARKNLMRLAQRMIRTFCVNISTSSGQLWTALPDSAD DTVRITTRKVTEAGQPNGLILCAVSTTWLPYPHDQVFDLLRDERSRSQLEVLSNGNAL HEVAHIANGAHPGNCISLLRINVASNSSQHVELMLQESCTDRSGSLVVYSTVDVDSVQ LAMSGEDPSCIPLLPLGFFITPVELIRDASDDQGKSVPPSEEANGHISGSLLTVGLQV LASTVPSAKINLSSIAAINNHLCTTVHQITAALSSSTAPSCPDNGIGVLGSCTEPASA PEK" mobile_element 33501027..33501064 /note="source:scaffold_2_CACTA_0259 6393 6430" /mobile_element_type="transposon:TIR/CACTA" gene 33501234..33501904 /locus_tag="TCM_016584" /note="dbxref CacaoGD:Thecc1EG016584" mRNA 33501234..33501904 /locus_tag="TCM_016584" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s33000.1" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4217t1" CDS 33501357..33501644 /locus_tag="TCM_016584" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25187.1" /translation="MGAFQRNRECPKGSMNFIVNVNVTPPEGEQDFVECPRRRLPRFK PPQVLVDTIKPALEVNAVAGFVLYAHRHPWENLLSYCFGELRHDCGRLCRK" gene complement(33509156..33510686) /locus_tag="TCM_016585" /note="dbxref CacaoGD:Thecc1EG016585" mRNA complement(join(33509156..33510028,33510368..33510686)) /locus_tag="TCM_016585" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(join(33509797..33510028,33510368..33510450)) /locus_tag="TCM_016585" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25188.1" /translation="MLKFYVSLRVFLSIHLDGVIEDFWSLFRESVTKRDSTKKRELDT WPNQGDRQNTWQKEGAADLGAFCVTVGGARTEIAGGYSRVSRDHMTGPGFTLSRGILC PS" gene 33510655..33518229 /locus_tag="TCM_016586" /note="dbxref CacaoGD:Thecc1EG016586" mRNA join(33510655..33511246,33512760..33513144, 33513885..33514041,33514122..33514341,33514612..33514665, 33514779..33514858,33514948..33515225,33515307..33515702, 33515781..33516187,33516321..33516599,33517207..33518229) /locus_tag="TCM_016586" /product="Jumonji domain protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02020.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09480.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1042t8" mRNA join(33510703..33511246,33512760..33513144, 33513885..33514041,33514122..33514341,33514612..33514665, 33514779..33514858,33514948..33515225,33515307..33515702, 33515781..33516187,33516324..33516599,33517207..33518145) /locus_tag="TCM_016586" /product="Jumonji domain protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02020.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09480.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1264t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1042t8" CDS join(33511244..33511246,33512760..33513144, 33513885..33514041,33514122..33514341,33514612..33514665, 33514779..33514858,33514948..33515225,33515307..33515702, 33515781..33516187,33516321..33516599,33517207..33517566) /locus_tag="TCM_016586" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Jumonji domain protein isoform 1" /protein_id="EOY25189.1" /db_xref="Phytozome:POPTR_0003s09480.1" /db_xref="TAIR:AT5G46910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU66" /translation="MVEGRVCLSKEAKNGLEFLKRKRLQRIKSETVSGTSGVTNLMAR SGGDALRVSASCGMRLPGNAESISSSNGASSERDVFSKRKVNKFDTSDLEWTEKIPEC PVYCPTKEEFEDPLVYLQQIAPEASKYGICKIISPLSATVPAGVVLMKENVGFKFTTR VQPLRLAEWDTDDRVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYMEKEFWH EIACGKIESVEYACDVEGSAFSSSPSDPLGTSKWNLKKLSRLPKSILRLLETAIPGVT DPMLYIGMLFSIFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALKFEKVVKEHVYTN DILSTDGEDGAFDVLLGKTTLFPPNILLEHDVPVYKAVQKPGEFVITFPRAYHAGFSH GFNCGEAVNFAVGDWFPLGAVASLRYAHLNRVPLLPHEELLCKEAMLLNTSLELEDLE YSAADLASHHSIKVSFVKLMRFLHRARWSVMKSRACSSISPNYYRTVVCTLCKRDCYV AFINCSCYSHPICLRHDIKSLGFPCGGYHGLFLRDDVAEMEAVAQKFEQEDVISKEIE QQAENGDDLYSYPLSNLFQTDVEDGYFPYCDISVVLNPEIAAISTTTGQPLEHIQPKM SHDTGNFRAELTDAFSSFAASTICSFVEQVGSSPKNQVQGLANLGNTNGKGFSEEVSR NTYESSASCLCREDCPGNHHGNVHEPESRSTVDQDSDGSDSEIFRVKRRSFLKIEKRN ANDTMSSKNCEHQGLKRLKKLQHEGRCGQSTSSEGCRTDEPSRNINSTSDCKEAPENA VKERFGRGGALPISIKYKKLGNEETMSRQREHQRYDRFHHEFGKSTRETPPLEIGPKR LKVRGPTSLGSESRLD" CDS join(33511244..33511246,33512760..33513144, 33513885..33514041,33514122..33514341,33514612..33514665, 33514779..33514858,33514948..33515225,33515307..33515702, 33515781..33516187,33516324..33516599,33517207..33517566) /locus_tag="TCM_016586" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Jumonji domain protein isoform 2" /protein_id="EOY25190.1" /db_xref="Phytozome:POPTR_0003s09480.1" /db_xref="TAIR:AT5G46910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU66" /translation="MVEGRVCLSKEAKNGLEFLKRKRLQRIKSETVSGTSGVTNLMAR SGGDALRVSASCGMRLPGNAESISSSNGASSERDVFSKRKVNKFDTSDLEWTEKIPEC PVYCPTKEEFEDPLVYLQQIAPEASKYGICKIISPLSATVPAGVVLMKENVGFKFTTR VQPLRLAEWDTDDRVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYMEKEFWH EIACGKIESVEYACDVEGSAFSSSPSDPLGTSKWNLKKLSRLPKSILRLLETAIPGVT DPMLYIGMLFSIFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALKFEKVVKEHVYTN DILSTDGEDGAFDVLLGKTTLFPPNILLEHDVPVYKAVQKPGEFVITFPRAYHAGFSH GFNCGEAVNFAVGDWFPLGAVASLRYAHLNRVPLLPHEELLCKEAMLLNTSLELEDLE YSAADLASHHSIKVSFVKLMRFLHRARWSVMKSRACSSISPNYYRTVVCTLCKRDCYV AFINCSCYSHPICLRHDIKSLGFPCGGYHGLFLRDDVAEMEAVAQKFEQEDVISKEIE QQAENGDDLYSYPLSNLFQTDVEDGYFPYCDISVVLNPEIAAISTTTGQPLEHIQPKM SHDTGNFRAELTDAFSSFAASTICSFVEQVGSSPKNVQGLANLGNTNGKGFSEEVSRN TYESSASCLCREDCPGNHHGNVHEPESRSTVDQDSDGSDSEIFRVKRRSFLKIEKRNA NDTMSSKNCEHQGLKRLKKLQHEGRCGQSTSSEGCRTDEPSRNINSTSDCKEAPENAV KERFGRGGALPISIKYKKLGNEETMSRQREHQRYDRFHHEFGKSTRETPPLEIGPKRL KVRGPTSLGSESRLD" mRNA join(33514019..33514041,33514612..33514665, 33514779..33514858,33514948..33515225,33515307..33515702, 33515781..33516187,33516324..33516599,33517207..33518145) /locus_tag="TCM_016586" /product="Jumonji domain protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s02020.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09480.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1042t3; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1042t8" CDS join(33514794..33514858,33514948..33515225, 33515307..33515702,33515781..33516187,33516324..33516599, 33517207..33517566) /locus_tag="TCM_016586" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Jumonji domain protein isoform 3" /protein_id="EOY25191.1" /db_xref="Phytozome:POPTR_0003s09480.1" /db_xref="TAIR:AT5G46910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU66" /translation="MLYIGMLFSIFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALK FEKVVKEHVYTNDILSTDGEDGAFDVLLGKTTLFPPNILLEHDVPVYKAVQKPGEFVI TFPRAYHAGFSHGFNCGEAVNFAVGDWFPLGAVASLRYAHLNRVPLLPHEELLCKEAM LLNTSLELEDLEYSAADLASHHSIKVSFVKLMRFLHRARWSVMKSRACSSISPNYYRT VVCTLCKRDCYVAFINCSCYSHPICLRHDIKSLGFPCGGYHGLFLRDDVAEMEAVAQK FEQEDVISKEIEQQAENGDDLYSYPLSNLFQTDVEDGYFPYCDISVVLNPEIAAISTT TGQPLEHIQPKMSHDTGNFRAELTDAFSSFAASTICSFVEQVGSSPKNVQGLANLGNT NGKGFSEEVSRNTYESSASCLCREDCPGNHHGNVHEPESRSTVDQDSDGSDSEIFRVK RRSFLKIEKRNANDTMSSKNCEHQGLKRLKKLQHEGRCGQSTSSEGCRTDEPSRNINS TSDCKEAPENAVKERFGRGGALPISIKYKKLGNEETMSRQREHQRYDRFHHEFGKSTR ETPPLEIGPKRLKVRGPTSLGSESRLD" gene complement(33518074..33518816) /locus_tag="TCM_016587" /note="dbxref CacaoGD:Thecc1EG016587" mRNA complement(33518074..33518816) /locus_tag="TCM_016587" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage" CDS complement(33518120..33518518) /locus_tag="TCM_016587" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25192.1" /translation="MWQPWHCRNSKQDSGPEEDPGTAAIASLQMQQKKAHITTPGKRN NTSASPWAPTPSNPPFAFPSKFQTNYIRKSPLMAYARKNTPPHPHHHPTRAKYSNIAG PSDIASCSLLLPHNPTTNRQDAGLFVAANE" mobile_element complement(33521713..33521883) /note="source:scaffold_10_CACTA_0137 6931 7013" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33528409..33528834 /note="source:MITE_PIF_Tourist_7 1 404" /mobile_element_type="transposon:TIR/MITE" gene 33533209..33538003 /locus_tag="TCM_016589" /note="dbxref CacaoGD:Thecc1EG016589" mRNA join(33533209..33533898,33534084..33534160, 33535171..33535216,33535310..33535475,33536587..33536644, 33537475..33537713) /locus_tag="TCM_016589" /product="Homeodomain-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09490.2" /inference="similar to AA sequence:Phytozome:POPTR_0003s09490.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09033t00001; alternateUTRof:Thecc1EG016589t1; inference alignment:Newbler:10:TSA:cgbaB_g09033t00001" mRNA join(33533229..33533898,33534084..33534160, 33535171..33535216,33535310..33535475,33536587..33536644, 33537475..33538003) /locus_tag="TCM_016589" /product="Homeodomain-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09490.2" /inference="similar to AA sequence:Phytozome:POPTR_0003s09490.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09033t00001" CDS join(33533235..33533898,33534084..33534160, 33535171..33535216,33535310..33535475,33536587..33536644, 33537475..33537594) /locus_tag="TCM_016589" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 1" /protein_id="EOY25193.1" /db_xref="Phytozome:POPTR_0003s09490.2" /db_xref="TAIR:AT1G32240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2CGQ0" /translation="MELFPAQPDLSLQISPPNSKPSSTWRRTEEDMDLGFWKRALDSR NSVSSMAKTDNCFELSLSNPRVSESNSNHLHLLQNGGANCNGNLFHTYHQNQFPHRHN QLQHPVLYQHQQQQQGLGQELGFLRPIRGIPVYQNHPPPTPFPFAQQPLDSSLASSPS SLVTNNTSNTSLSPFQSQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLG GHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDAFENGSSGDT SEDLMFDIQNPRRSEISVQQGRPSSNAHQDKEYHGLWSNSSREAWLHGKPKDSARNLP SLEKDMDPKCLSYERISDVSSSSLSGTSPKKPNLEFTLGVPH" CDS join(33533235..33533898,33534084..33534160, 33535171..33535216,33535310..33535475,33536587..33536644, 33537475..33537594) /locus_tag="TCM_016589" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 1" /protein_id="EOY25194.1" /db_xref="Phytozome:POPTR_0003s09490.2" /db_xref="TAIR:AT1G32240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2CGQ0" /translation="MELFPAQPDLSLQISPPNSKPSSTWRRTEEDMDLGFWKRALDSR NSVSSMAKTDNCFELSLSNPRVSESNSNHLHLLQNGGANCNGNLFHTYHQNQFPHRHN QLQHPVLYQHQQQQQGLGQELGFLRPIRGIPVYQNHPPPTPFPFAQQPLDSSLASSPS SLVTNNTSNTSLSPFQSQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLG GHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDAFENGSSGDT SEDLMFDIQNPRRSEISVQQGRPSSNAHQDKEYHGLWSNSSREAWLHGKPKDSARNLP SLEKDMDPKCLSYERISDVSSSSLSGTSPKKPNLEFTLGVPH" gene 33539231..33540905 /locus_tag="TCM_016590" /note="dbxref CacaoGD:Thecc1EG016590" mRNA join(33539231..33539307,33539696..33539746, 33539887..33540905) /locus_tag="TCM_016590" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS 33539975..33540295 /locus_tag="TCM_016590" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25195.1" /translation="MLLVIFQSPPEFVNPKTSKGYKTGSFQICRISARQGDITGETMV EIYGKLHPHFHKKECMVQKLELYNNDMLFSFQPLFPLLKRPLMGSTRAELLPGFTIRQ TKLC" mobile_element 33545926..33546046 /note="source:CACAO_MITE111_scaffold_7 67 184" /mobile_element_type="transposon:TIR/MITE" gene 33547385..33553158 /locus_tag="TCM_016591" /note="dbxref CacaoGD:Thecc1EG016591" mRNA join(33547385..33547585,33549453..33549685, 33550275..33550465,33550545..33550739,33551100..33551161, 33551744..33551810,33551901..33552019,33552406..33552606, 33552780..33553158) /locus_tag="TCM_016591" /product="Shikimate kinase-like protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002646" /inference="similar to AA sequence:Phytozome:POPTR_0003s09520.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01634t00001" mRNA join(33549285..33549685,33550275..33550465, 33550545..33550739,33551100..33551161,33551744..33551810, 33551901..33552019,33552430..33552650) /locus_tag="TCM_016591" /product="Shikimate kinase-like protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002646" /inference="similar to AA sequence:Phytozome:POPTR_0003s09520.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b016031t1a2; inference alignment:Newbler:10:TSA:cgbaL_g01634t00001" CDS join(33549470..33549685,33550275..33550465, 33550545..33550739,33551100..33551161,33551744..33551810, 33551901..33552019,33552406..33552606,33552780..33552868) /locus_tag="TCM_016591" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Shikimate kinase-like protein isoform 1" /protein_id="EOY25196.1" /db_xref="Phytozome:POPTR_0003s09520.1" /db_xref="TAIR:AT2G35500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZJ5" /translation="MAGAIASAGATLCFSSQNPIKTLHFSTKTHSFYFPKPKVSAFRW NSVRPISPLHGFSCNCFSTVSTNTTHYEFSDGSSEVELRLELGGQDVPSAKDIFVDAD GTSLTVKVRQAGSFVILIETNSLFEKIKPAETIWYVDDDQLVINLKKQDLDLEWPDIV ESWESLSAGSMQLLKGTSIYIVGDSTEINQKVARELAVALGYTPLDTKELLETFTKQT VDSWVLAEGSDSVAEAESAILESLSSHVRAVVATLGGSHGAAGRTDKWRHLYSGFTVW LSQTEAIVNSRNPDADEDSAKGEARRHVQDGSLGYSNADVVVKLQGWDADHAKSLAQA SLSALKQLILSDKKLPGKKSLYIRLGCRGDRPNIKPPGWDPSTPN" CDS join(33549470..33549685,33550275..33550465, 33550545..33550739,33551100..33551161,33551744..33551810, 33551901..33552019,33552430..33552626) /locus_tag="TCM_016591" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Shikimate kinase-like protein isoform 2" /protein_id="EOY25197.1" /db_xref="Phytozome:POPTR_0003s09520.1" /db_xref="TAIR:AT2G35500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZJ5" /translation="MAGAIASAGATLCFSSQNPIKTLHFSTKTHSFYFPKPKVSAFRW NSVRPISPLHGFSCNCFSTVSTNTTHYEFSDGSSEVELRLELGGQDVPSAKDIFVDAD GTSLTVKVRQAGSFVILIETNSLFEKIKPAETIWYVDDDQLVINLKKQDLDLEWPDIV ESWESLSAGSMQLLKGTSIYIVGDSTEINQKVARELAVALGYTPLDTKELLETFTKQT VDSWVLAEGSDSVAEAESAILESLSSHVRAVVATLGGSHGAAGRTDKWRHLYSGFTVW LSQTEAIDEDSAKGEARRHVQDGSLGYSNADVVVKLQGWDADHAKSLAQASLSALKQL ILSDKKLPGIALHV" gene complement(33552729..33559010) /locus_tag="TCM_016592" /note="dbxref CacaoGD:Thecc1EG016592" mRNA complement(join(33552729..33553578,33553689..33553784, 33553881..33554066,33554475..33554578,33554987..33555228, 33555974..33557225,33557390..33557829,33558803..33559010)) /locus_tag="TCM_016592" /product="WWE protein-protein interaction domain protein family, putative isoform 1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01980.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b016032t1a3; alternateUTRof:Thecc1EG016592t1" mRNA complement(join(33552729..33553578,33553689..33553784, 33553881..33554066,33554475..33554539,33554987..33555228, 33555974..33557225,33557390..33557829,33558584..33558782)) /locus_tag="TCM_016592" /product="WWE protein-protein interaction domain protein family, putative isoform 6" /inference="alignment:exonerate-protein:2:frave:gene13736" /inference="similar to AA sequence:Phytozome:POPTR_0001s01980.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:PASA:2:TSA:puevd3b016032t1a6; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10402t4" mRNA complement(join(33552729..33553578,33553689..33553784, 33553881..33554066,33554475..33554578,33554987..33555228, 33555974..33557225,33557390..33557544,33558584..33558764)) /locus_tag="TCM_016592" /product="WWE protein-protein interaction domain protein family, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13736" /inference="similar to AA sequence:Phytozome:POPTR_0001s01980.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:PASA:2:TSA:puevd3b016032t1a5; alternateUTRof:Thecc1EG016592t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10402t4" mRNA complement(join(33552729..33553578,33553689..33553784, 33553881..33554066,33554475..33554578,33554987..33555228, 33555974..33557225,33557390..33557829,33558584..33558755)) /locus_tag="TCM_016592" /product="WWE protein-protein interaction domain protein family, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13736" /inference="similar to AA sequence:Phytozome:POPTR_0001s01980.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12291t2; alternateUTRof:Thecc1EG016592t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10402t4" mRNA complement(join(33552729..33553578,33553689..33553784, 33553881..33554066,33554475..33554539,33554987..33555228, 33555974..33557225,33557390..33557544,33558584..33558673)) /locus_tag="TCM_016592" /product="WWE protein-protein interaction domain protein family, putative isoform 6" /inference="alignment:exonerate-protein:2:frave:gene13736" /inference="similar to AA sequence:Phytozome:POPTR_0001s01980.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12291t3; alternateUTRof:Thecc1EG016592t6; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10402t4" mRNA complement(join(33552729..33553578,33553689..33553784, 33553881..33554066,33554475..33554578,33554987..33555228, 33555974..33557225,33557390..33558243,33558300..33558421)) /locus_tag="TCM_016592" /product="WWE protein-protein interaction domain protein family, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13736" /inference="similar to AA sequence:Phytozome:POPTR_0001s01980.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:PASA:2:TSA:puevd3b016032t1a2; alternateUTRof:Thecc1EG016592t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10402t4" mRNA complement(join(33552808..33553578,33553689..33553778, 33553877..33554066,33554475..33554539,33554987..33555228, 33555974..33557083)) /locus_tag="TCM_016592" /product="WWE protein-protein interaction domain protein family, putative isoform 8" /inference="alignment:exonerate-protein:2:frave:gene13736" /inference="similar to AA sequence:Phytozome:POPTR_0001s01980.1" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc21t41; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10402t4" mRNA complement(join(33552928..33553578,33553689..33553784, 33553881..33554066,33554475..33554578,33554987..33555228, 33555974..33557225,33557390..33557544,33558803..33558997)) /locus_tag="TCM_016592" /product="WWE protein-protein interaction domain protein family, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13736" /inference="similar to AA sequence:Phytozome:POPTR_0001s01980.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10402t4" mobile_element 33553285..33553330 /note="source:CACAO_Mutator_E1320_scaffold_6 2025 2070" /mobile_element_type="transposon:TIR/Mutator" CDS complement(join(33553516..33553578,33553689..33553784, 33553881..33554066,33554475..33554539,33554987..33555228, 33555974..33557103)) /locus_tag="TCM_016592" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="WWE protein-protein interaction domain protein family, putative isoform 6" /protein_id="EOY25203.1" /db_xref="Phytozome:POPTR_0001s01980.1" /db_xref="TAIR:AT1G32230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU68" /translation="MEAQNAMVLDSQPGVLHGMKRKRAVQQATYFPGASHVVLPQLPG LSLPSQKHGKRRRLEDCNGKVVSCGYPSKRSLLLCYSNFRKTGVPKRLMFFENGEWNN FPKDLISSIRKDLDAKMPAIQLEKDGQSFVLDFLHMFRLDCKTGLKQPIAWIDEADGC FFPETFAGEDGPYQCCEHEFENDKESFFSESYAPPEIKLQLEIDINGVEQSKLKECSG ESSSFDRHFQIAQKPASSHCAVEVEDSCDRNADAKPSKALEDRRNLVPEKEFAGVELD EQLVEKMFRKGMHPCGGVDILDVETCFSASKQYRFECFQKQVQIVKKYRGSANVQYAW LASSKAALPTIRMHGVGHSKLSKIPHKYGAGVHLAAAELTNTSAKYCDVDENGIQYMV FCRVIMGKMERLSPGSTQDLPSSEDVDSGVDDLQHPKYYIIWDMNINTHIYPEFVVSF KLSSIAKGVTASSQALQGRFPVVPSAGELGSINHQTSDSGGSQENDPSLGSNTSKAPK SPWMPFPMLFAAISTKIPRVDMDQVTNHYELFRAKKISRDAFVKKLRFLVGDDLLRST ITSLQCKIPSRQDLQVVKQNMKGPGSR" CDS complement(join(33553516..33553578,33553689..33553784, 33553881..33554066,33554475..33554539,33554987..33555228, 33555974..33557103)) /locus_tag="TCM_016592" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="WWE protein-protein interaction domain protein family, putative isoform 6" /protein_id="EOY25204.1" /db_xref="Phytozome:POPTR_0001s01980.1" /db_xref="TAIR:AT1G32230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU68" /translation="MEAQNAMVLDSQPGVLHGMKRKRAVQQATYFPGASHVVLPQLPG LSLPSQKHGKRRRLEDCNGKVVSCGYPSKRSLLLCYSNFRKTGVPKRLMFFENGEWNN FPKDLISSIRKDLDAKMPAIQLEKDGQSFVLDFLHMFRLDCKTGLKQPIAWIDEADGC FFPETFAGEDGPYQCCEHEFENDKESFFSESYAPPEIKLQLEIDINGVEQSKLKECSG ESSSFDRHFQIAQKPASSHCAVEVEDSCDRNADAKPSKALEDRRNLVPEKEFAGVELD EQLVEKMFRKGMHPCGGVDILDVETCFSASKQYRFECFQKQVQIVKKYRGSANVQYAW LASSKAALPTIRMHGVGHSKLSKIPHKYGAGVHLAAAELTNTSAKYCDVDENGIQYMV FCRVIMGKMERLSPGSTQDLPSSEDVDSGVDDLQHPKYYIIWDMNINTHIYPEFVVSF KLSSIAKGVTASSQALQGRFPVVPSAGELGSINHQTSDSGGSQENDPSLGSNTSKAPK SPWMPFPMLFAAISTKIPRVDMDQVTNHYELFRAKKISRDAFVKKLRFLVGDDLLRST ITSLQCKIPSRQDLQVVKQNMKGPGSR" CDS complement(join(33553516..33553578,33553689..33553784, 33553881..33554066,33554475..33554578,33554987..33555228, 33555974..33557103)) /locus_tag="TCM_016592" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="WWE protein-protein interaction domain protein family, putative isoform 1" /protein_id="EOY25198.1" /db_xref="Phytozome:POPTR_0001s01980.1" /db_xref="TAIR:AT1G32230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU68" /translation="MEAQNAMVLDSQPGVLHGMKRKRAVQQATYFPGASHVVLPQLPG LSLPSQKHGKRRRLEDCNGKVVSCGYPSKRSLLLCYSNFRKTGVPKRLMFFENGEWNN FPKDLISSIRKDLDAKMPAIQLEKDGQSFVLDFLHMFRLDCKTGLKQPIAWIDEADGC FFPETFAGEDGPYQCCEHEFENDKESFFSESYAPPEIKLQLEIDINGVEQSKLKECSG ESSSFDRHFQIAQKPASSHCAVEVEDSCDRNADAKPSKALEDRRNLVPEKEFAGVELD EQLVEKMFRKGMHPCGGVDILDVETCFSASKQYRFECFQKQVQIVKKYRGSANVQYAW LASSKAALPTIRMHGVGHSKLSKIPHKYGAGVHLAAAELTNTSAKYCDVDENGIQYMV FCRVIMGKMERLSPGSTQDLPSSEDVDSGVDDLQHPKYYIIWDMNINTHIYPEFVVSF KLSSIAKGHLIGSETNNAVSGVTASSQALQGRFPVVPSAGELGSINHQTSDSGGSQEN DPSLGSNTSKAPKSPWMPFPMLFAAISTKIPRVDMDQVTNHYELFRAKKISRDAFVKK LRFLVGDDLLRSTITSLQCKIPSRQDLQVVKQNMKGPGSR" CDS complement(join(33553516..33553578,33553689..33553784, 33553881..33554066,33554475..33554578,33554987..33555228, 33555974..33557103)) /locus_tag="TCM_016592" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="WWE protein-protein interaction domain protein family, putative isoform 1" /protein_id="EOY25199.1" /db_xref="Phytozome:POPTR_0001s01980.1" /db_xref="TAIR:AT1G32230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU68" /translation="MEAQNAMVLDSQPGVLHGMKRKRAVQQATYFPGASHVVLPQLPG LSLPSQKHGKRRRLEDCNGKVVSCGYPSKRSLLLCYSNFRKTGVPKRLMFFENGEWNN FPKDLISSIRKDLDAKMPAIQLEKDGQSFVLDFLHMFRLDCKTGLKQPIAWIDEADGC FFPETFAGEDGPYQCCEHEFENDKESFFSESYAPPEIKLQLEIDINGVEQSKLKECSG ESSSFDRHFQIAQKPASSHCAVEVEDSCDRNADAKPSKALEDRRNLVPEKEFAGVELD EQLVEKMFRKGMHPCGGVDILDVETCFSASKQYRFECFQKQVQIVKKYRGSANVQYAW LASSKAALPTIRMHGVGHSKLSKIPHKYGAGVHLAAAELTNTSAKYCDVDENGIQYMV FCRVIMGKMERLSPGSTQDLPSSEDVDSGVDDLQHPKYYIIWDMNINTHIYPEFVVSF KLSSIAKGHLIGSETNNAVSGVTASSQALQGRFPVVPSAGELGSINHQTSDSGGSQEN DPSLGSNTSKAPKSPWMPFPMLFAAISTKIPRVDMDQVTNHYELFRAKKISRDAFVKK LRFLVGDDLLRSTITSLQCKIPSRQDLQVVKQNMKGPGSR" CDS complement(join(33553516..33553578,33553689..33553784, 33553881..33554066,33554475..33554578,33554987..33555228, 33555974..33557103)) /locus_tag="TCM_016592" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="WWE protein-protein interaction domain protein family, putative isoform 1" /protein_id="EOY25200.1" /db_xref="Phytozome:POPTR_0001s01980.1" /db_xref="TAIR:AT1G32230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU68" /translation="MEAQNAMVLDSQPGVLHGMKRKRAVQQATYFPGASHVVLPQLPG LSLPSQKHGKRRRLEDCNGKVVSCGYPSKRSLLLCYSNFRKTGVPKRLMFFENGEWNN FPKDLISSIRKDLDAKMPAIQLEKDGQSFVLDFLHMFRLDCKTGLKQPIAWIDEADGC FFPETFAGEDGPYQCCEHEFENDKESFFSESYAPPEIKLQLEIDINGVEQSKLKECSG ESSSFDRHFQIAQKPASSHCAVEVEDSCDRNADAKPSKALEDRRNLVPEKEFAGVELD EQLVEKMFRKGMHPCGGVDILDVETCFSASKQYRFECFQKQVQIVKKYRGSANVQYAW LASSKAALPTIRMHGVGHSKLSKIPHKYGAGVHLAAAELTNTSAKYCDVDENGIQYMV FCRVIMGKMERLSPGSTQDLPSSEDVDSGVDDLQHPKYYIIWDMNINTHIYPEFVVSF KLSSIAKGHLIGSETNNAVSGVTASSQALQGRFPVVPSAGELGSINHQTSDSGGSQEN DPSLGSNTSKAPKSPWMPFPMLFAAISTKIPRVDMDQVTNHYELFRAKKISRDAFVKK LRFLVGDDLLRSTITSLQCKIPSRQDLQVVKQNMKGPGSR" CDS complement(join(33553516..33553578,33553689..33553784, 33553881..33554066,33554475..33554578,33554987..33555228, 33555974..33557103)) /locus_tag="TCM_016592" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="WWE protein-protein interaction domain protein family, putative isoform 1" /protein_id="EOY25201.1" /db_xref="Phytozome:POPTR_0001s01980.1" /db_xref="TAIR:AT1G32230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU68" /translation="MEAQNAMVLDSQPGVLHGMKRKRAVQQATYFPGASHVVLPQLPG LSLPSQKHGKRRRLEDCNGKVVSCGYPSKRSLLLCYSNFRKTGVPKRLMFFENGEWNN FPKDLISSIRKDLDAKMPAIQLEKDGQSFVLDFLHMFRLDCKTGLKQPIAWIDEADGC FFPETFAGEDGPYQCCEHEFENDKESFFSESYAPPEIKLQLEIDINGVEQSKLKECSG ESSSFDRHFQIAQKPASSHCAVEVEDSCDRNADAKPSKALEDRRNLVPEKEFAGVELD EQLVEKMFRKGMHPCGGVDILDVETCFSASKQYRFECFQKQVQIVKKYRGSANVQYAW LASSKAALPTIRMHGVGHSKLSKIPHKYGAGVHLAAAELTNTSAKYCDVDENGIQYMV FCRVIMGKMERLSPGSTQDLPSSEDVDSGVDDLQHPKYYIIWDMNINTHIYPEFVVSF KLSSIAKGHLIGSETNNAVSGVTASSQALQGRFPVVPSAGELGSINHQTSDSGGSQEN DPSLGSNTSKAPKSPWMPFPMLFAAISTKIPRVDMDQVTNHYELFRAKKISRDAFVKK LRFLVGDDLLRSTITSLQCKIPSRQDLQVVKQNMKGPGSR" CDS complement(join(33553516..33553578,33553689..33553784, 33553881..33554066,33554475..33554578,33554987..33555228, 33555974..33557103)) /locus_tag="TCM_016592" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="WWE protein-protein interaction domain protein family, putative isoform 1" /protein_id="EOY25202.1" /db_xref="Phytozome:POPTR_0001s01980.1" /db_xref="TAIR:AT1G32230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU68" /translation="MEAQNAMVLDSQPGVLHGMKRKRAVQQATYFPGASHVVLPQLPG LSLPSQKHGKRRRLEDCNGKVVSCGYPSKRSLLLCYSNFRKTGVPKRLMFFENGEWNN FPKDLISSIRKDLDAKMPAIQLEKDGQSFVLDFLHMFRLDCKTGLKQPIAWIDEADGC FFPETFAGEDGPYQCCEHEFENDKESFFSESYAPPEIKLQLEIDINGVEQSKLKECSG ESSSFDRHFQIAQKPASSHCAVEVEDSCDRNADAKPSKALEDRRNLVPEKEFAGVELD EQLVEKMFRKGMHPCGGVDILDVETCFSASKQYRFECFQKQVQIVKKYRGSANVQYAW LASSKAALPTIRMHGVGHSKLSKIPHKYGAGVHLAAAELTNTSAKYCDVDENGIQYMV FCRVIMGKMERLSPGSTQDLPSSEDVDSGVDDLQHPKYYIIWDMNINTHIYPEFVVSF KLSSIAKGHLIGSETNNAVSGVTASSQALQGRFPVVPSAGELGSINHQTSDSGGSQEN DPSLGSNTSKAPKSPWMPFPMLFAAISTKIPRVDMDQVTNHYELFRAKKISRDAFVKK LRFLVGDDLLRSTITSLQCKIPSRQDLQVVKQNMKGPGSR" CDS complement(join(33553777..33553778,33553877..33554066, 33554475..33554539,33554987..33555228,33555974..33557049)) /locus_tag="TCM_016592" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="WWE protein-protein interaction domain protein family, putative isoform 8" /protein_id="EOY25205.1" /db_xref="Phytozome:POPTR_0001s01980.1" /db_xref="TAIR:AT1G32230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU68" /translation="MKRKRAVQQATYFPGASHVVLPQLPGLSLPSQKHGKRRRLEDCN GKVVSCGYPSKRSLLLCYSNFRKTGVPKRLMFFENGEWNNFPKDLISSIRKDLDAKMP AIQLEKDGQSFVLDFLHMFRLDCKTGLKQPIAWIDEADGCFFPETFAGEDGPYQCCEH EFENDKESFFSESYAPPEIKLQLEIDINGVEQSKLKECSGESSSFDRHFQIAQKPASS HCAVEVEDSCDRNADAKPSKALEDRRNLVPEKEFAGVELDEQLVEKMFRKGMHPCGGV DILDVETCFSASKQYRFECFQKQVQIVKKYRGSANVQYAWLASSKAALPTIRMHGVGH SKLSKIPHKYGAGVHLAAAELTNTSAKYCDVDENGIQYMVFCRVIMGKMERLSPGSTQ DLPSSEDVDSGVDDLQHPKYYIIWDMNINTHIYPEFVVSFKLSSIAKGVTASSQALQG RFPVVPSAGELGSINHQTSDSGGSQENDPSLGSNTSKAPKSPWMPFPMLFAAISTKIP RVDMDQVTNHYELFRV" mRNA complement(join(<33554986..33555228,33555974..33557225, 33557390..33557546)) /locus_tag="TCM_016592" /product="WWE protein-protein interaction domain protein family, putative isoform 9" /inference="alignment:exonerate-protein:2:frave:gene13736" /inference="similar to AA sequence:Phytozome:POPTR_0001s01980.1" /note="transcript variant 9; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.46 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00168c00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10402t4" CDS complement(join(<33554988..33555228,33555974..33557103)) /locus_tag="TCM_016592" /note="encoded by transcript variant 9; alternatively spliced" /codon_start=1 /product="WWE protein-protein interaction domain protein family, putative isoform 9" /protein_id="EOY25206.1" /db_xref="Phytozome:POPTR_0001s01980.1" /db_xref="TAIR:AT1G32230.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU68" /translation="MEAQNAMVLDSQPGVLHGMKRKRAVQQATYFPGASHVVLPQLPG LSLPSQKHGKRRRLEDCNGKVVSCGYPSKRSLLLCYSNFRKTGVPKRLMFFENGEWNN FPKDLISSIRKDLDAKMPAIQLEKDGQSFVLDFLHMFRLDCKTGLKQPIAWIDEADGC FFPETFAGEDGPYQCCEHEFENDKESFFSESYAPPEIKLQLEIDINGVEQSKLKECSG ESSSFDRHFQIAQKPASSHCAVEVEDSCDRNADAKPSKALEDRRNLVPEKEFAGVELD EQLVEKMFRKGMHPCGGVDILDVETCFSASKQYRFECFQKQVQIVKKYRGSANVQYAW LASSKAALPTIRMHGVGHSKLSKIPHKYGAGVHLAAAELTNTSAKYCDVDENGIQYMV FCRVIMGKMERLSPGSTQDLPSSEDVDSGVDDLQHPKYYIIWDMNINTHIYPEFVVSF KLSSIAK" gene 33562412..33564997 /locus_tag="TCM_016596" /note="dbxref CacaoGD:Thecc1EG016596" mRNA join(33562412..33562615,33562739..33562809, 33563151..33563788,33564043..33564154,33564599..33564997) /locus_tag="TCM_016596" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01970.1" /inference="similar to AA sequence:Phytozome:GSVIVT01013092001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07878t00001" CDS join(33562541..33562615,33562739..33562809, 33563151..33563788,33564043..33564154,33564599..33564638) /locus_tag="TCM_016596" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25207.1" /db_xref="Phytozome:GSVIVT01013092001" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU69" /translation="MGKEGDLWDDSALVDAFDSAMSKYKRMHGKKTSEENVSVVDQCG DEAMKHRDAGENSNATSDTGTESAEAKDLQPDEENDNINSQTPERYIDSSNNLPMQDK QDGHKGYSDVQGTEDYNQLLSQYYEVEEKRQKLLQQMQQFGSWNYQYPAEGSSAAAQW GTSCTSQEYPIHTSQASHSTVVCSCCPYVSQSLVTPCTSYPCCSLGGTCVGKTSTNTN NAVAHGTLSTAIDCDIVKTAMGAAERAISSMTNKASVNPNINEDNKEKKDGEGETNQS TTFETDLAVLLNAWYSAGFYTGKYLMEQNIARKRQ" gene complement(33564580..33568020) /locus_tag="TCM_016597" /note="dbxref CacaoGD:Thecc1EG016597" mRNA complement(join(33564580..33565409,33565751..33565876, 33565989..33566135,33566618..33566676,33566783..33566871, 33566947..33567049,33567381..33567662)) /locus_tag="TCM_016597" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002654" /inference="similar to AA sequence:ricco:30068.m002654" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11646t1; inference alignment:Newbler:10:TSA:cgbaP2_g04744t00001_C1; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc142t6" mRNA complement(join(33564961..33565409,33565751..33565876, 33565989..33566132,33566618..33566673,33566748..33566871, 33566947..33567049,33567381..33567514)) /locus_tag="TCM_016597" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30068.m002654" /inference="similar to AA sequence:Phytozome:Glyma01g01830.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc142t12; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc142t6; inference alignment:Newbler:10:TSA:cgbaP2_g04744t00001_C1" mRNA complement(join(33565101..33565409,33565751..33565876, 33565989..33566135,33566618..33566673,33566783..33566871, 33566947..33567049,33567381..33568020)) /locus_tag="TCM_016597" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002654" /inference="similar to AA sequence:ricco:30068.m002654" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04744t00001_C1" CDS complement(join(33565129..33565409,33565751..33565876, 33565989..33566135,33566618..33566673,33566783..33566871, 33566947..33567049,33567381..33567478)) /locus_tag="TCM_016597" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002654" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /protein_id="EOY25208.1" /db_xref="TAIR:AT1G32220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU70" /translation="MTSLRAFPAVTAPLSSLTTASFPTRPNSLPQNRLCKFGVKCRYA EAGIKDDSRSPTIDVVADVKSEKVVVLGGSGFVGSAICKAAVSKGIEVISLSRSGRPT YPGSWVNQVNWISGDVFYANWDEVLVGATAVVSTLGGFGSEEQMKRINGEANVTAVNA AKDFGIPKFILISVHDYNLPSFLLSSGYFTGKRKAESEVLSKYPNSGVVLRPAFIYGK RRVDGFELPLDLVGEPLERILSATENLTKPLSSLPASDLLLAPPVSVDDVAYAVINAV KDDDFFGIFTIEQIKEAAAKVKA" CDS complement(join(33565129..33565409,33565751..33565876, 33565989..33566135,33566618..33566676,33566783..33566871, 33566947..33567049,33567381..33567478)) /locus_tag="TCM_016597" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002654" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /protein_id="EOY25209.1" /db_xref="TAIR:AT1G32220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU70" /translation="MTSLRAFPAVTAPLSSLTTASFPTRPNSLPQNRLCKFGVKCRYA EAGIKDDSRSPTIDVVADVKSEKVVVLGGSGFVGSAICKAAVSKGIEVISLSSRSGRP TYPGSWVNQVNWISGDVFYANWDEVLVGATAVVSTLGGFGSEEQMKRINGEANVTAVN AAKDFGIPKFILISVHDYNLPSFLLSSGYFTGKRKAESEVLSKYPNSGVVLRPAFIYG KRRVDGFELPLDLVGEPLERILSATENLTKPLSSLPASDLLLAPPVSVDDVAYAVINA VKDDDFFGIFTIEQIKEAAAKVKA" CDS complement(join(33565129..33565409,33565751..33565876, 33565989..33566132,33566618..33566673,33566748..33566749)) /locus_tag="TCM_016597" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 3" /protein_id="EOY25210.1" /db_xref="Phytozome:Glyma01g01830.1" /db_xref="TAIR:AT1G32220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU70" /translation="MSGRPTYPGSWVNQVNWISDVFYANWDEVLVGATAVVSTLGGFG SEEQMKRINGEANVTAVNAAKDFGIPKFILISVHDYNLPSFLLSSGYFTGKRKAESEV LSKYPNSGVVLRPAFIYGKRRVDGFELPLDLVGEPLERILSATENLTKPLSSLPASDL LLAPPVSVDDVAYAVINAVKDDDFFGIFTIEQIKEAAAKVKA" gene 33568232..33571697 /locus_tag="TCM_016598" /note="dbxref CacaoGD:Thecc1EG016598" mRNA join(33568232..33568496,33568587..33568678, 33568767..33568838,33568974..33569080,33569179..33569234, 33569342..33569516,33569698..33569781,33570030..33570320, 33570472..33571697) /locus_tag="TCM_016598" /product="Las1-like family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s07210.1" /inference="similar to AA sequence:Phytozome:POPTR_0009s07210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05059t00001" CDS join(33568317..33568496,33568587..33568678, 33568767..33568838,33568974..33569080,33569179..33569234, 33569342..33569516,33569698..33569781,33570030..33570320, 33570472..33571289) /locus_tag="TCM_016598" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Las1-like family protein, putative isoform 1" /protein_id="EOY25211.1" /db_xref="Phytozome:POPTR_0009s07210.1" /db_xref="TAIR:AT5G12220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GG63" /translation="MEPLLGFEEETIAAYNEELSSSSSSNGYKLVPWLNWTEWESVRK SLFSSSPAKISSALSRISAWRSRGCLPVVIDVTASIIEIQQTDPFFRGDKSKDDLHSE QMLAMLYCMAILRLVNCVVEKTRKRTGISIADAADAIGIPRKLIDVRHEGSHRELPAL AVVRDSSIVALNWLKSYYWEPQKKQIPLQGDGAVNIGKEIKSKLRELDFCIKAQQSAE LGSSLVKGKGSRQFNHLCGSNKFFSLMAGKVHLSQSGGLKKQIAKTLKSLVSLYSTSS SEVVSVLLEFLLKALDSSSFLDLAKDSKAGRDKHASWDDWELVITKFSKREPDFLLAL LQRVLDMIGTNEALKYQTEGHLTSSDRSREACQVEHLSSLFAWLVRHLLELKPAKGSG GKSMSNENFTELLRKCLLVSAFGNKHLMDSALHLAQLVGNSVLMEKLNKLRSLGLSST GDIGENSSLEISKTVRQEQESANQAAKKLELVKLRRMKSTFVKTADDVRNSNRWVVAK SWNPCPLGMLPRALGSSGRMPVLDCHNDCQRDTELVEGKENRELNPCSGKRKASDDIQ LLDLSSPKKVKETIGNHESGGEDVSSPDTSGLLMMDGVWKKVAQTELQSISSAVRILV " mRNA join(<33569342..33569516,33569698..33569781, 33570030..33570320,33570475..33571495) /locus_tag="TCM_016598" /product="Las1-like family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s07210.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s28030.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11730t1; inference alignment:Newbler:10:TSA:cgbaB_g05059t00001" CDS join(<33569342..33569516,33569698..33569781, 33570030..33570320,33570475..33571289) /locus_tag="TCM_016598" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Las1-like family protein, putative isoform 2" /protein_id="EOY25212.1" /db_xref="Phytozome:POPTR_0001s28030.1" /db_xref="TAIR:AT5G12220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GXJ7" /translation="ALNWLKSYYWEPQKKQIPLQGDGAVNIGKEIKSKLRELDFCIKA QQSAELGSSLVKGKGSRQFNHLCGSNKFFSLMAGKVHLSQSGGLKKQIAKTLKSLVSL YSTSSSEVVSVLLEFLLKALDSSSFLDLAKDSKAGRDKHASWDDWELVITKFSKREPD FLLALLQRVLDMIGTNEALKYQTGHLTSSDRSREACQVEHLSSLFAWLVRHLLELKPA KGSGGKSMSNENFTELLRKCLLVSAFGNKHLMDSALHLAQLVGNSVLMEKLNKLRSLG LSSTGDIGENSSLEISKTVRQEQESANQAAKKLELVKLRRMKSTFVKTADDVRNSNRW VVAKSWNPCPLGMLPRALGSSGRMPVLDCHNDCQRDTELVEGKENRELNPCSGKRKAS DDIQLLDLSSPKKVKETIGNHESGGEDVSSPDTSGLLMMDGVWKKVAQTELQSISSAV RILV" gene 33571752..33573674 /locus_tag="TCM_016599" /note="dbxref CacaoGD:Thecc1EG016599" mRNA join(33571752..33572072,33572179..33572226, 33572610..33572697,33572778..33572821,33573082..33573674) /locus_tag="TCM_016599" /product="Defender against death (DAD family) protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026038" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400026038" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10337t4" CDS join(33571986..33572072,33572179..33572226, 33572610..33572697,33572778..33572821,33573082..33573165) /locus_tag="TCM_016599" /codon_start=1 /product="Defender against death (DAD family) protein" /protein_id="EOY25213.1" /db_xref="Phytozome:PGSC0003DMP400026038" /db_xref="TAIR:AT1G32210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU71" /translation="MGRSSSTKDAQALFHSLRSAYAATPVNLKIIDLYVGFAVFTALI QVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKENKEFKDLPPERAFADFVL CNLVLHLVIMNFLG" gene 33575281..33583425 /locus_tag="TCM_016600" /note="dbxref CacaoGD:Thecc1EG016600" mRNA join(33575281..33576012,33577351..33577448, 33578177..33578263,33578385..33578482,33579206..33579263, 33579844..33579945,33580036..33580097,33580189..33580299, 33580415..33580493,33581520..33581639,33581710..33581823, 33582317..33582487,33582599..33582809,33583277..33583425) /locus_tag="TCM_016600" /product="Phospholipid/glycerol acyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01930.1" /inference="similar to AA sequence:Phytozome:GSVIVT01013060001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00273t00002" mRNA join(33575281..33576012,33577351..33577448, 33578177..33578263,33578385..33578482,33579206..33579263, 33579844..33579945,33580036..33580097,33580189..33580299, 33580415..33580493,33581520..33581639,33581710..33581823, 33582317..33583124) /locus_tag="TCM_016600" /product="Phospholipid/glycerol acyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01930.1" /inference="similar to AA sequence:Phytozome:GSVIVT01013060001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b016037t1a4; alternateUTRof:Thecc1EG016600t1; inference alignment:Newbler:10:TSA:cgbaL_g00273t00002" mRNA join(33575281..33576012,33577351..33577448, 33578177..33578263,33578385..33578482,33579206..33579263, 33579844..33579945,33580036..33580097,33580189..33580299, 33580415..33580493,33581710..33581823,33582317..33582487, 33582599..33583124) /locus_tag="TCM_016600" /product="Phospholipid/glycerol acyltransferase family protein isoform 3" /inference="similar to AA sequence:Phytozome:GSVIVT01013060001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b016037t1a2" mRNA join(33575308..33576012,33577351..33577448, 33578177..33578263,33578385..33578482,33579206..33579263, 33579844..33579945,33580036..33580097,33580189..33580299, 33580415..33580493,33581542..33581567) /locus_tag="TCM_016600" /product="Phospholipid/glycerol acyltransferase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01930.1" /inference="similar to AA sequence:Phytozome:GSVIVT01013060001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc523t15; inference alignment:Newbler:10:TSA:cgbaL_g00273t00002" CDS join(33575691..33576012,33577351..33577448, 33578177..33578263,33578385..33578482,33579206..33579263, 33579844..33579945,33580036..33580097,33580189..33580299, 33580415..33580493,33581520..33581639,33581710..33581823, 33582317..33582451) /locus_tag="TCM_016600" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Phospholipid/glycerol acyltransferase family protein isoform 1" /protein_id="EOY25214.1" /db_xref="Phytozome:GSVIVT01013060001" /db_xref="TAIR:AT1G32200.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43307" /translation="MSTLPLPFFSGTSTRAPFSFSLKSSPPSAASSSSSSSLVPFQRV ELFRSTSTRTTRSFSCVFYSLKAKAMAELVQDKESGVAATGSSGGGRPEVEHSRTFLE ARSEQELLSGIRKEVEAGRLPPNIAAGMEELYQNYRNAVFQSGDPSAVEIVLSNMAVA FDRMLLDVEDPFVFEPYHKALREPFDYYMFGQNYIRPLTDFRNSYVGNLSLFYEIEEK LKQGHNVVLISNHQTEADPAIITLLLEKTNPHVAENMIYVAGDRVITDPLCKPFSMGR NLICVYSKKHMYDVPELVEMKRKANTQSLKQMALLLRGGSKIVWIAPSGGRDRPDPLT EEWYPAPFDSSSVDNMRRLIEHSGAPGHIYPLALLCYNIMPPPPQVEKQIGERRNISF HGAGLSVAPKISFQEIAAACEKSEEAKDVYSQALYKSVTKQYNVLKSAVHGKQGLEAS TAGVSLSQPWN" CDS join(33575691..33576012,33577351..33577448, 33578177..33578263,33578385..33578482,33579206..33579263, 33579844..33579945,33580036..33580097,33580189..33580299, 33580415..33580493,33581520..33581639,33581710..33581823, 33582317..33582451) /locus_tag="TCM_016600" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Phospholipid/glycerol acyltransferase family protein isoform 1" /protein_id="EOY25215.1" /db_xref="Phytozome:GSVIVT01013060001" /db_xref="TAIR:AT1G32200.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43307" /translation="MSTLPLPFFSGTSTRAPFSFSLKSSPPSAASSSSSSSLVPFQRV ELFRSTSTRTTRSFSCVFYSLKAKAMAELVQDKESGVAATGSSGGGRPEVEHSRTFLE ARSEQELLSGIRKEVEAGRLPPNIAAGMEELYQNYRNAVFQSGDPSAVEIVLSNMAVA FDRMLLDVEDPFVFEPYHKALREPFDYYMFGQNYIRPLTDFRNSYVGNLSLFYEIEEK LKQGHNVVLISNHQTEADPAIITLLLEKTNPHVAENMIYVAGDRVITDPLCKPFSMGR NLICVYSKKHMYDVPELVEMKRKANTQSLKQMALLLRGGSKIVWIAPSGGRDRPDPLT EEWYPAPFDSSSVDNMRRLIEHSGAPGHIYPLALLCYNIMPPPPQVEKQIGERRNISF HGAGLSVAPKISFQEIAAACEKSEEAKDVYSQALYKSVTKQYNVLKSAVHGKQGLEAS TAGVSLSQPWN" CDS join(33575691..33576012,33577351..33577448, 33578177..33578263,33578385..33578482,33579206..33579263, 33579844..33579945,33580036..33580097,33580189..33580299, 33580415..33580493,33581710..33581823,33582317..33582451) /locus_tag="TCM_016600" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Phospholipid/glycerol acyltransferase family protein isoform 3" /protein_id="EOY25216.1" /db_xref="Phytozome:GSVIVT01013060001" /db_xref="TAIR:AT1G32200.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43307" /translation="MSTLPLPFFSGTSTRAPFSFSLKSSPPSAASSSSSSSLVPFQRV ELFRSTSTRTTRSFSCVFYSLKAKAMAELVQDKESGVAATGSSGGGRPEVEHSRTFLE ARSEQELLSGIRKEVEAGRLPPNIAAGMEELYQNYRNAVFQSGDPSAVEIVLSNMAVA FDRMLLDVEDPFVFEPYHKALREPFDYYMFGQNYIRPLTDFRNSYVGNLSLFYEIEEK LKQGHNVVLISNHQTEADPAIITLLLEKTNPHVAENMIYVAGDRVITDPLCKPFSMGR NLICVYSKKHMYDVPELVEMKRKANTQSLKQMALLLRGGSKIVWIAPSGGRDRPDPLT EEWYPVEKQIGERRNISFHGAGLSVAPKISFQEIAAACEKSEEAKDVYSQALYKSVTK QYNVLKSAVHGKQGLEASTAGVSLSQPWN" CDS join(33575691..33576012,33577351..33577448, 33578177..33578263,33578385..33578482,33579206..33579263, 33579844..33579945,33580036..33580097,33580189..33580299, 33580415..33580493,33581542..33581553) /locus_tag="TCM_016600" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Phospholipid/glycerol acyltransferase family protein isoform 4" /protein_id="EOY25217.1" /db_xref="Phytozome:GSVIVT01013060001" /db_xref="TAIR:AT1G32200.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43307" /translation="MSTLPLPFFSGTSTRAPFSFSLKSSPPSAASSSSSSSLVPFQRV ELFRSTSTRTTRSFSCVFYSLKAKAMAELVQDKESGVAATGSSGGGRPEVEHSRTFLE ARSEQELLSGIRKEVEAGRLPPNIAAGMEELYQNYRNAVFQSGDPSAVEIVLSNMAVA FDRMLLDVEDPFVFEPYHKALREPFDYYMFGQNYIRPLTDFRNSYVGNLSLFYEIEEK LKQGHNVVLISNHQTEADPAIITLLLEKTNPHVAENMIYVAGDRVITDPLCKPFSMGR NLICVYSKKHMYDVPELVEMKRKANTQSLKQMALLLRGGSKIVWIAPSGGRDRPDPLT EEWYPWTI" gene 33587180..33592035 /locus_tag="TCM_016601" /note="dbxref CacaoGD:Thecc1EG016601" mRNA join(33587180..33588084,33589088..33589119, 33589529..33589765,33589986..33590033,33590748..33591455) /locus_tag="TCM_016601" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037099t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01920.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc792t8; inference alignment:Newbler:10:TSA:cgbaP2_g07507t00001" mRNA join(33587203..33588084,33589088..33589124, 33589529..33589765,33589986..33590033,33590755..33591077) /locus_tag="TCM_016601" /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037099t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01920.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc798t4; inference alignment:Newbler:10:TSA:cgbaP2_g07507t00001" mRNA join(33587562..33588084,33589088..33589124, 33589529..33589765,33589986..33590033,33590748..33592035) /locus_tag="TCM_016601" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037099t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01920.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07507t00001" CDS join(33587762..33588084,33589088..33589124, 33589529..33589765,33589986..33590033,33590748..33591251) /locus_tag="TCM_016601" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037099t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY25218.1" /db_xref="Phytozome:POPTR_0001s01920.1" /db_xref="TAIR:AT1G32190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FVR4" /translation="MGCMVSQLAAKFAFFPPSPPTYQIKKHDNGKLTVVSSSSSTPIS VADDTSLDVLLIDTKRGNKIVAFYLKNPYARLTVLYSHGNAADLGQLYDLFVQLKVNL RVNIMGYDYSGYGASTGKPSESNTYADIEAVYQCLQTEYGISQEDLILYGQSVGSGPT LHLAAKLPRLRGVVLHSGILSGLRVLCHVKFTFCFDIYQNINKIRKVKCPVLVIHGTE DDVVNWLHGNGLWKMAREPYEPLWIKGGGHCNLELYPDYIRHLCKFIYEMENMTTEIR LKRIRQSLRLPTRPNTTASSVTSNECCKIHFCQPKCPKCPKCPKPRCTNCCCWWPKCS CCWRPSCLNCCRKPKCPKCWLGSCCCIKCSQWRCCVDSHNELNGKQEG" CDS join(33587762..33588084,33589088..33589124, 33589529..33589765,33589986..33590033,33590755..33590916) /locus_tag="TCM_016601" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037099t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /protein_id="EOY25220.1" /db_xref="Phytozome:POPTR_0001s01920.1" /db_xref="TAIR:AT1G32190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FVR4" /translation="MGCMVSQLAAKFAFFPPSPPTYQIKKHDNGKLTVVSSSSSTPIS VADDTSLDVLLIDTKRGNKIVAFYLKNPYARLTVLYSHGNAADLGQLYDLFVQLKVNL RVNIMGYDYSGYGASTGKPSESNTYADIEAVYQCLQTEYGISQEDLILYGQSVGSGPT LHLAAKLPRLRGVVLHSGILSGLRVLCHVKFTFCFDIYQNINKIRKVKCPVLVIHKMM LSIGCMEMDSGKWRGSHMSLCGSREVATATWSYTPITYAIFVSSFMKWRT" CDS join(33587979..33588084,33589088..33589119, 33589529..33589765,33589986..33590033,33590748..33591251) /locus_tag="TCM_016601" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037099t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY25219.1" /db_xref="Phytozome:POPTR_0001s01920.1" /db_xref="TAIR:AT1G32190.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MRN1" /translation="MHALPCFILTAMLLTLASSMTSLSSSRSTSESILWGMTILAMEH LLPSESNTYADIEAVYQCLQTEYGISQEDLILYGQSVGSGPTLHLAAKLPRLRGVVLH SGILSGLRVLCHVKFTFCFDIYQNINKIRKVKCPVLVIHGTEDDVVNWLHGNGLWKMA REPYEPLWIKGGGHCNLELYPDYIRHLCKFIYEMENMTTEIRLKRIRQSLRLPTRPNT TASSVTSNECCKIHFCQPKCPKCPKCPKPRCTNCCCWWPKCSCCWRPSCLNCCRKPKC PKCWLGSCCCIKCSQWRCCVDSHNELNGKQEG" gene 33591521..33603162 /locus_tag="TCM_016602" /note="dbxref CacaoGD:Thecc1EG016602" mRNA join(33591521..33592052,33597718..33598253, 33598571..33599385,33599762..33600569,33600835..33603162) /locus_tag="TCM_016602" /product="Cellulose synthase-like D3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400055037" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025462t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01880.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3124t1" mobile_element 33594193..33595261 /note="source:MITE_hAT_13 1 1069" /mobile_element_type="transposon:TIR/MITE" CDS join(33598622..33599385,33599762..33600569, 33600835..33602586) /locus_tag="TCM_016602" /note="paralog of Thecc1EG025462t1" /codon_start=1 /product="Cellulose synthase-like D3" /protein_id="EOY25221.1" /db_xref="Phytozome:POPTR_0001s01880.1" /db_xref="TAIR:AT3G03050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFL0" /translation="MASESQVTRRSPTIHHITNSAGDLENEIGGVDFARYTVHIPPTP DNQPMPMEIAMQVVGTEEQYVSNSMFTGGHNRVTRAHSKKIVDSGTSHPPMVVAEGSF CEIPGCSARMMTNRQGIDVFPCECGFRICKDCYQDAMGSGDGICPGCKEHYRGLDESE MALASQLRLSTSERRLSMVESKEFLMKSPSNEFDYTQYLYETNKSYGYGNAVWPMDGA SGSKDEIGGDPKVFREKQWKPLTQKSNIRAAVLSPYRLLILIRIVVLGLFLEWRITHP NEDAIWLWFMSVICEIWIAFSWLLDQLPKLCPVNRAVDLDVLQEKFETASSNNPSGRS DLPGIDVFVSTADPEKEPPLVTANTILSILAAEYPVEKLACYVSDDGGALLTFEAMAE AASFARIWVPFCRKHGIEPRNPESYFNLKRDPYKNKVRPDFVRDRRRVKREYDEFKVR INGLSDSIRRRSDAFNTREEVKVLKRWREDNSDEPMEGLKIPKATWMADSTHWPGTWT VPAPEHSRGDHASIIQVMLDPPSHEPRKGTEGDGNSMNLSEVDIRLPMLVYVTREKRP GYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLALREGMCFMMDRDGDRIC YVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGVQGPVYVGTGCLFRRTALYGFEPP QLQEDTDCCSCCFPRLKKPATVASAPDVDPEDIQLREDDEMNIALIPKKFGNSSALID SVRVAAIQGQPLADHPAVKYGRPPGALTMPREPLDPSTIGEAINVISCWYEDKTEWGQ SVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGS VEIFFSRNNALLGSPRLKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQT LNVTFLVYLLAITLTLCALAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLL KVLAGIEISFTLTSKSAGDDVDDDFADLYIFKWTSLMIPPLTIIMVNLIAIAYGVCRT IYSTDPEWSHLLGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVYVWSGLIAISISLLW VAIKPPSGNSDIGGSFQFP" gene complement(33604330..33608981) /locus_tag="TCM_016603" /note="dbxref CacaoGD:Thecc1EG016603" mRNA complement(join(33604330..33605221,33606253..33606461, 33606672..33606772,33606862..33607346,33608959..33608981)) /locus_tag="TCM_016603" /product="Xyloglucan endotransglucosylase/hydrolase protein 30" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g01770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011239t1" /inference="similar to AA sequence:ricco:30068.m002657" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13810t00001" CDS complement(join(33604684..33605221,33606253..33606461, 33606672..33606772,33606862..33607072)) /locus_tag="TCM_016603" /note="dbxref ricco:30068.m002657; paralog of Thecc1EG011239t1" /codon_start=1 /product="Xyloglucan endotransglucosylase/hydrolase protein 30" /protein_id="EOY25222.1" /db_xref="TAIR:AT1G32170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38908" /translation="MGRLHGSLSETLTPFSLLFFFFSWFSGFTFAAFNLTTLSFDEGY SPLFGDGNLVRSPDGHSVRLLLDVYTGSGFISSSMYQHGFFSAKIKLPSDYTAGIVVA FYTSNGDVFEKNHDELDFEFLGNIEGKPWRFQTNLYGNGSTNRGREERYSLWFDPSKE FHRYSILWTVKNIIFYIDEVPIREVVRNDEMGGDYPSKPMSLYATIWDASSWATSGGK YKVNYKYAPFTSEFKELVLEGCPTDPIQEFTNASACSDRHAWLESRDYALITPEQRAA MRRFRQRYMYYSYCYDSLRYPVTPPECVIYPTEKERFQDSGRLKFGGSHRKQARITRA RRKRRSRVASISNDQTDM" gene complement(33609028..33612661) /locus_tag="TCM_016604" /note="dbxref CacaoGD:Thecc1EG016604" mRNA complement(join(33609028..33610608,33610906..33611180, 33612379..33612661)) /locus_tag="TCM_016604" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400016401" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013026t2" /inference="similar to AA sequence:ricco:30068.m002656" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07346t00001" CDS complement(join(33609789..33610608,33610906..33611180, 33612379..33612492)) /locus_tag="TCM_016604" /note="dbxref ricco:30068.m002656; paralog of Thecc1EG013026t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25223.1" /db_xref="TAIR:AT1G32160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZK0" /translation="MQIAGVTSEVLVAVPSAGTLTFRHFHSNNFFLSSPFLKRCSSFC IPKLGMAPDKYRARYLTMRASGESDDSLSPIAPVQFESPVGQLLAQILRTHPHLLPAA IDQQLENLQSDKDDQKEETTPSQDLLYKRIAEVKEKERRRTLEEIIYCLIVQKFVDNE ISMIPKIMATSDPTGRVDFWPNQEQKLESVHSPEAFEMIQGHLSLVLGDRVVGPLSTI VEISKIKLGKLYAASIMYGYFLRRVDQRFQLERTMRTLPEDFNKDQARFEDPNPGKQM WDPDSWIRIPPNDDNDGDGGGYMDTLEGKSYRLRSYVMYLDSETLQRYATIRSREAIS LIEKQTQALFGRPDIRILDDGSLDTSNDEVVSITFTGLTMLVLEAVAFGSFLWDAESY VESKYHFLKS" mobile_element 33612176..33612211 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5698 5733" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33612762..33613866 /locus_tag="TCM_016605" /note="dbxref CacaoGD:Thecc1EG016605" mRNA join(33612762..33612962,33613225..33613395, 33613575..33613866) /locus_tag="TCM_016605" /product="40S ribosomal protein S23-1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400054085" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400054085" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10331t1" gene complement(33613142..33619609) /locus_tag="TCM_016606" /note="dbxref CacaoGD:Thecc1EG016606" mRNA complement(join(33613142..33614653,33614785..33614910, 33614984..33615061,33615327..33615616,33615711..33615753, 33616947..33617001,33617629..33617798,33617897..33617956, 33618053..33618142,33618315..33618389,33618484..33618540, 33618648..33618764,33619243..33619609)) /locus_tag="TCM_016606" /product="BZIP domain class transcription factor isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002661" /inference="similar to AA sequence:ricco:30068.m002661" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:PASA:2:TSA:puevd3b016044t1a2; alternateUTRof:Thecc1EG016606t1; inference alignment:Newbler:10:TSA:cgbaB_g02579t00001" CDS join(33613248..33613395,33613575..33613717) /locus_tag="TCM_016605" /codon_start=1 /product="40S ribosomal protein S23-1" /protein_id="EOY25224.1" /db_xref="Phytozome:PGSC0003DMP400054085" /db_xref="TAIR:AT1G57540.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FVU7" /translation="MALRRLLGWSDGELMRSDAKPCSRLMRQTAGIFTVGGALGFWVL CRLQHGPRITVPRSLRWAACGAVSVSSTSALLVRLFSPECEPQNVAAYDMGK" mRNA complement(join(33614089..33614653,33614785..33614910, 33614984..33615061,33615327..33615616,33615711..33615753, 33616947..33617001,33617629..33617798,33617897..33617956, 33618053..33618142,33618315..33618389,33618484..33618540, 33618648..33618764,33619227..33619541)) /locus_tag="TCM_016606" /product="BZIP domain class transcription factor isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002661" /inference="similar to AA sequence:ricco:30068.m002661" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02579t00001; inference alignment:Newbler:10:TSA:cgbaB_g02579t00001" CDS complement(join(33614549..33614653,33614785..33614910, 33614984..33615061,33615327..33615616,33615711..33615753, 33616947..33617001,33617629..33617798,33617897..33617956, 33618053..33618142,33618315..33618389,33618484..33618540, 33618648..33618719)) /locus_tag="TCM_016606" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002661" /codon_start=1 /product="BZIP domain class transcription factor isoform 1" /protein_id="EOY25225.1" /db_xref="TAIR:AT2G35530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIQ9" /translation="MGSSEMDKTAKEKEPKTPPAATTQEQSSTTNSGTVNADWSGFQA YSPIPPHGFLASSPQAPPYMWGVQHIIPPYGTPPHPYVAMYPHGGIYAHPSIPPGSYP FSPFAMPSPNGILEASGNTPGTMETDGKPSDVKEKLPIKRSKGSLGSLNMITGKNNNL GKTSGASANGVYSKSAESGSEGTSEGSDANSQNDSQMKSGGRQDSGEGEASQNGSAAH DPQNGGPNAPHTMVNTAMAIVPISTAGAPTAVPGPTTNLHIGMDYWGTPASSAVPAMR GKVPSTAVAGGIVTPASRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECD ELAQRAEVLKEENANLRSEVNRIKCEYEQLLAENTSLKERLGEIPGHEDLKSGRNDQH TNNDGQTELVQGSH" CDS complement(join(33614549..33614653,33614785..33614910, 33614984..33615061,33615327..33615616,33615711..33615753, 33616947..33617001,33617629..33617798,33617897..33617956, 33618053..33618142,33618315..33618389,33618484..33618540, 33618648..33618719)) /locus_tag="TCM_016606" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002661" /codon_start=1 /product="BZIP domain class transcription factor isoform 1" /protein_id="EOY25226.1" /db_xref="TAIR:AT2G35530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIQ9" /translation="MGSSEMDKTAKEKEPKTPPAATTQEQSSTTNSGTVNADWSGFQA YSPIPPHGFLASSPQAPPYMWGVQHIIPPYGTPPHPYVAMYPHGGIYAHPSIPPGSYP FSPFAMPSPNGILEASGNTPGTMETDGKPSDVKEKLPIKRSKGSLGSLNMITGKNNNL GKTSGASANGVYSKSAESGSEGTSEGSDANSQNDSQMKSGGRQDSGEGEASQNGSAAH DPQNGGPNAPHTMVNTAMAIVPISTAGAPTAVPGPTTNLHIGMDYWGTPASSAVPAMR GKVPSTAVAGGIVTPASRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECD ELAQRAEVLKEENANLRSEVNRIKCEYEQLLAENTSLKERLGEIPGHEDLKSGRNDQH TNNDGQTELVQGSH" mobile_element complement(33620994..33621865) /note="source:INTACT639F_F363_scaffold_5-int 7467 8364" /mobile_element_type="retrotransposon:LTR/Copia" gene 33622405..33625390 /locus_tag="TCM_016607" /note="dbxref CacaoGD:Thecc1EG016607" mRNA 33622405..33625390 /locus_tag="TCM_016607" /product="DNAJ heat shock N-terminal domain-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:28781.m000026" /inference="similar to AA sequence:Phytozome:POPTR_0003s09650.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11650t1" CDS 33622437..33624494 /locus_tag="TCM_016607" /codon_start=1 /product="DNAJ heat shock N-terminal domain-containing protein, putative" /protein_id="EOY25227.1" /db_xref="Phytozome:POPTR_0003s09650.1" /db_xref="TAIR:AT2G35540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T856" /translation="MAPDPDAEQEAQRLKALAETKYKNSNLKSALKHAKKAHRLFPNL EGISSMLTAFKILRAASQADASPDWYSILQVEPFSHINSIKKQYRKLALILHPDKNPY LGCEEAFKLVGEGFRIFSDKIRRKEYDMKLRIRIQEERVDGLEENGVVGETFWTACSR CRLLHKFERKYLGHNLVCPSCKKSFLAVEVDGEGGDGESTEEEEVVAAVSVSERLKRK MVSKEKMSSVKSVGLEGEKGSGETIRSVGLRRKVSDENLKEKERGGGDDGWGVGRLRS GVLRRRMSTVGEVLARSVAGKVDDGEEKRSRSKRVKVAEETMTLAEMKWEMKQKANQG REKLNLKEKVNKAGEKEKKRDRREPPKNRVSKIEKQKASEKSKDFEIGSQGPSKMSGN LGIMTRATKKISVDLEARTQEGGKKNQNSELTKQGTSRKKVKLDIKKRCGSKSGDMKI MAVEDSDFYDFDKDRLERNFKRGQVWAIYDDDDGMPRHYGLIEEVFTVNPFELKMSWL DFQNNGDDRLISWEKRGFHVSCGRFKAARKSSINSVNIFSHMVECERAAKELYRIYPK KGSVWALYNEAKSGAAGRNFSARDKHCYDIVVFLTTYSEIHGLSMAYLEKVDGFRTIF KRQEIGCQAIRWLEKDDIRLFSHQIPARKLSSDDVPDLLKDCWELDPTSLPPDLLAIG LES" gene 33626127..33630840 /locus_tag="TCM_016608" /note="dbxref CacaoGD:Thecc1EG016608" mRNA join(33626127..33626384,33626497..33626917, 33627367..33627486,33627655..33627875,33627963..33628092, 33628191..33628253,33628352..33628429,33628732..33628823, 33628941..33629003,33629113..33629299,33629551..33630157, 33630698..33630840) /locus_tag="TCM_016608" /product="Transcription elongation factor (TFIIS) family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09640.1.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030629t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09640.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10371t1" CDS join(33626377..33626384,33626497..33626917, 33627367..33627486,33627655..33627875,33627963..33628092, 33628191..33628253,33628352..33628429,33628732..33628823, 33628941..33629003,33629113..33629299,33629551..33629649) /locus_tag="TCM_016608" /note="paralog of Thecc1EG030629t1" /codon_start=1 /product="Transcription elongation factor (TFIIS) family protein" /protein_id="EOY25228.1" /db_xref="Phytozome:POPTR_0003s09640.1" /db_xref="TAIR:AT1G32130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ICK8" /translation="MDSYRDEEGEPIMDYDDIQSDPGSPEPRQDLLDDVEDDMEDWGR RERSQTPVYDTDKVGKPRKRLVKKGGSMGKESMDAPELLDEDEDANFGREGSESDARK RKKKEKSLKEKKYGGGGEKGTVAKLGKSEEVNEMWEWVNPENDQEGVRTMDDDDFIDD SGVDPADRYGSDNEARSPGDAPQAEEDGEDPEIKDLFKMGKKRKKNEKSPAEIALLVE NVMAELEVTAEEDAELNRQGKPAINKLKKLPLLTEVLSKKQLQPEFLDHGVLTLLKNW LEPLPDGSLPNINIRAAILRILTDFPIDLEQHDRREQLKRSGLGKVIMFLSKSDEETT SNRKLAKDLVDKWSRPIFNKSTRFEDMRNIDDDRVPLRRPSVKRPANRAAAMESRDGD FDLDISRDHKSGRSSSGQHASRTESSSRLHASRPEATPMDFVVRPQSKIDPDEIRARA KQVVQDQRRQKMSKKLLQLKAPKKKQLQATKLSVEGRGMLKYL" gene complement(33630743..33635520) /locus_tag="TCM_016609" /note="dbxref CacaoGD:Thecc1EG016609" mRNA complement(join(33630743..33630967,33631092..33632210, 33632302..33632546,33632625..33632824,33632910..33633561, 33633779..33634103,33635123..33635520)) /locus_tag="TCM_016609" /product="SWIM zinc finger family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026479001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038289t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s04150.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1303t4_C2" CDS complement(join(33631420..33632210,33632302..33632546, 33632625..33632824,33632910..33633561,33633779..33634047)) /locus_tag="TCM_016609" /note="paralog of Thecc1EG038289t1" /codon_start=1 /product="SWIM zinc finger family protein" /protein_id="EOY25229.1" /db_xref="Phytozome:POPTR_0007s04150.1" /db_xref="TAIR:AT1G60560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY56" /translation="MEIVESILDIPVQDPPEEEFSSADLTWTKFGAAEHHDDVALIPY ARVDEFIIGECSNVECPTRFHIERGRKRSKGSLKEYKSDEYLEYRLYWCSFGPENYGE GGGILPSRKYRLNTRNRAARPQSMRGCMCHFVVKRLYAQPSLALIIYNERRHINKSGF VCHGPLDKDAIGPGAKKIPYISNEIQQQTMSMIYLGIPEENVLEKHIECIQRYCGSDA RVSTLASQYVRKLGMIIKRSTHELDLDDQASIRMWVERNKKSIFFYQDTSETDPFILG IQTEWQLQQMVRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVSWVITRSVA KSDVAKWMKALLDRARSIEPGWKINGFLIDDAAMEIDPIRDTFYCPILFSLWRVRRSW LRNVVKKCSNIEVQREIFKRLGEIVYSIWGGINTSVALEELIQDFVDQNAFVEYFKSS WVPKIEMWLSTMKTIPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWLVHKLTT ELHSTYWLDRYADESDSFLNVKEEYIASTSWHRALQIPDSFVTLGDKANLFAKVASQK DISITHLVWNPGSDFAFCDCAWSMQGNFCKHVIKVNMMCENREGYKPSMSFQSFREIL MDLLKKPMDDSIALDESVAWTHQMLDQIKQLVELNSSNDIGIVVKNMPLKWVSKKGRT FVGIPASLPAIPSSSKSITKNLQKKNRKRKRLSRLR" gene complement(33635725..33638784) /locus_tag="TCM_016610" /note="dbxref CacaoGD:Thecc1EG016610" mRNA complement(join(33635725..33636091,33636675..33636750, 33636860..33636948,33637044..33637097,33637318..33637457, 33637952..33638059,33638728..33638784)) /locus_tag="TCM_016610" /product="E2F/DP family winged-helix DNA-binding domain isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01810.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0001s01810.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07211t00001; alternateUTRof:Thecc1EG016610t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10341t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc325t2" mRNA complement(join(33635728..33636091,33636675..33636750, 33636860..33636939,33637044..33637097, 33637318..>33637345)) /locus_tag="TCM_016610" /product="E2F/DP family winged-helix DNA-binding domain isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01810.1.2" /inference="similar to AA sequence:ricco:29736.m002106" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc314t5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10341t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc325t2" mRNA complement(join(33635768..33636091,33636675..33636750, 33636860..33636948,33637044..33637097,33637318..33637457, 33637952..33638053,33638728..33638763)) /locus_tag="TCM_016610" /product="E2F/DP family winged-helix DNA-binding domain isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01810.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0001s01810.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10341t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10341t1" CDS complement(join(33635970..33636091,33636675..33636750, 33636860..33636948,33637044..33637097,33637318..33637457, 33637952..33638010)) /locus_tag="TCM_016610" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="E2F/DP family winged-helix DNA-binding domain isoform 1" /protein_id="EOY25230.1" /db_xref="Phytozome:POPTR_0001s01810.1" /db_xref="TAIR:AT4G19003.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZC9" /translation="MQKLGDFKLPHFFNYPPYFTLQPVRETREKQVQLWKDLILDYCR TQKIFIIGLEEEFPLFSNPVIERTLSHEAREAFFSALVSEGRAEWLDKGHRKCLILWH RIQDWAGIILNFVKDNGFEDSVMTVEEIRSGIESRGTELHGIDRTILMRALKILEQKG KLAIFKGTSADDEGVKFSV" CDS complement(join(33635970..33636091,33636675..33636750, 33636860..33636948,33637044..33637097,33637318..33637457, 33637952..33638010)) /locus_tag="TCM_016610" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="E2F/DP family winged-helix DNA-binding domain isoform 1" /protein_id="EOY25231.1" /db_xref="Phytozome:POPTR_0001s01810.1" /db_xref="TAIR:AT4G19003.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZC9" /translation="MQKLGDFKLPHFFNYPPYFTLQPVRETREKQVQLWKDLILDYCR TQKIFIIGLEEEFPLFSNPVIERTLSHEAREAFFSALVSEGRAEWLDKGHRKCLILWH RIQDWAGIILNFVKDNGFEDSVMTVEEIRSGIESRGTELHGIDRTILMRALKILEQKG KLAIFKGTSADDEGVKFSV" CDS complement(join(33635970..33636091,33636675..33636750, 33636860..33636939,33637044..33637097, 33637318..>33637345)) /locus_tag="TCM_016610" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29736.m002106" /codon_start=1 /product="E2F/DP family winged-helix DNA-binding domain isoform 3" /protein_id="EOY25232.1" /db_xref="TAIR:AT4G19003.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZC9" /translation="PLFSNPVIERTLSHEAREAFFSALVSEEWLDKGHRKCLILWHRI QDWAGIILNFVKDNGFEDSVMTVEEIRSGIESRGTELHGIDRTILMRALKILEQKGKL AIFKGTSADDEGVKFSV" gene 33638921..33642007 /locus_tag="TCM_016611" /note="dbxref CacaoGD:Thecc1EG016611" mRNA join(33638921..33639044,33639486..33639700, 33640297..33640379,33640618..33640704,33640872..33641020, 33641137..33641268,33641548..33642007) /locus_tag="TCM_016611" /product="Signal recognition particle receptor subunit beta isoform 1" /inference="alignment:exonerate- protein:2:ricco:29631.m001050" /inference="similar to AA sequence:Phytozome:GSVIVT01013784001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10338t1" mRNA join(33638921..33639044,33639486..33639700, 33640297..33640379,33640618..33640704,33640875..33641020, 33641137..33641268,33641548..33642007) /locus_tag="TCM_016611" /product="Signal recognition particle receptor subunit beta isoform 3" /inference="alignment:exonerate- protein:2:ricco:29631.m001050" /inference="similar to AA sequence:Phytozome:GSVIVT01013784001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b016049t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10338t1" mRNA join(33639017..33639127,33639486..33639700, 33640297..33640379,33640618..33640704,33640872..33641020, 33641137..33641268,33641548..33641942) /locus_tag="TCM_016611" /product="Signal recognition particle receptor subunit beta isoform 1" /inference="alignment:exonerate- protein:2:ricco:29631.m001050" /inference="similar to AA sequence:Phytozome:GSVIVT01013784001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc664t1; alternateUTRof:Thecc1EG016611t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10338t1" CDS join(33639520..33639700,33640297..33640379, 33640618..33640704,33640872..33641020,33641137..33641268, 33641548..33641737) /locus_tag="TCM_016611" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Signal recognition particle receptor subunit beta isoform 1" /protein_id="EOY25233.1" /db_xref="Phytozome:GSVIVT01013784001" /db_xref="TAIR:AT5G05670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBI2" /translation="MEGMEQWKDQLEQLKSQLEPWKNQLEQWLHQAIEFLNQIPPIQL YAAVAVLLVSTLLLLSFHLFKRTKSNSIVLTGLSGSGKTVLFYQLRDGSSHQGTVTSM EPNEGTFVLNSESYKKGKTKPVHLVDVPGHSRLQPKLDEFLPQAAGIVFVVDALEFLP NCRLASEYLYDILTKASVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR SAISAADIANDFTLGEPGEAFAFSQCRNKVTVAEASGLTGEVAQVEQFIREHVKP" CDS join(33639520..33639700,33640297..33640379, 33640618..33640704,33640872..33641020,33641137..33641268, 33641548..33641737) /locus_tag="TCM_016611" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Signal recognition particle receptor subunit beta isoform 1" /protein_id="EOY25234.1" /db_xref="Phytozome:GSVIVT01013784001" /db_xref="TAIR:AT5G05670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBI2" /translation="MEGMEQWKDQLEQLKSQLEPWKNQLEQWLHQAIEFLNQIPPIQL YAAVAVLLVSTLLLLSFHLFKRTKSNSIVLTGLSGSGKTVLFYQLRDGSSHQGTVTSM EPNEGTFVLNSESYKKGKTKPVHLVDVPGHSRLQPKLDEFLPQAAGIVFVVDALEFLP NCRLASEYLYDILTKASVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR SAISAADIANDFTLGEPGEAFAFSQCRNKVTVAEASGLTGEVAQVEQFIREHVKP" CDS join(33639520..33639700,33640297..33640379, 33640618..33640704,33640875..33641020,33641137..33641268, 33641548..33641737) /locus_tag="TCM_016611" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Signal recognition particle receptor subunit beta isoform 3" /protein_id="EOY25235.1" /db_xref="Phytozome:GSVIVT01013784001" /db_xref="TAIR:AT5G05670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBI2" /translation="MEGMEQWKDQLEQLKSQLEPWKNQLEQWLHQAIEFLNQIPPIQL YAAVAVLLVSTLLLLSFHLFKRTKSNSIVLTGLSGSGKTVLFYQLRDGSSHQGTVTSM EPNEGTFVLNSESYKGKTKPVHLVDVPGHSRLQPKLDEFLPQAAGIVFVVDALEFLPN CRLASEYLYDILTKASVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS AISAADIANDFTLGEPGEAFAFSQCRNKVTVAEASGLTGEVAQVEQFIREHVKP" gene 33642331..33647590 /locus_tag="TCM_016612" /note="dbxref CacaoGD:Thecc1EG016612" mRNA join(33642331..33642618,33642772..33642922, 33643410..33643507,33643728..33643837,33643925..33643977, 33644133..33644513,33645159..33645263,33645787..33646014, 33646344..33646466,33646951..33647590) /locus_tag="TCM_016612" /product="GHMP kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013024001" /inference="similar to AA sequence:Phytozome:GSVIVT01013024001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05390t00001" CDS join(33642611..33642618,33642772..33642922, 33643410..33643507,33643728..33643837,33643925..33643977, 33644133..33644513,33645159..33645263,33645787..33646014, 33646344..33646466,33646951..33647217) /locus_tag="TCM_016612" /codon_start=1 /product="GHMP kinase family protein" /protein_id="EOY25236.1" /db_xref="Phytozome:GSVIVT01013024001" /db_xref="TAIR:AT1G31910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU85" /translation="MEVVASAPGKVLMTGGYLILERPNAGIVLSTNARFYAIVKPIHE DVKPESWAWAWTDVKLTSPQLSRESTYKLSMKHLTLQCVSSSESRNPFVENAIQYAVA AGRATLDKNKKDALDKLLLQGLDITILGCNDFYSYRNQIEARGLPLTPDALAALPPFT SITFNAEESNGGNCKPEVAKTGLGSSAAMTTAVVAALLHYLGVVNLSSLSEDPHQQNS MDLDVVHMIAQSAHCIAQGKVGSGFDVSSAVYGSQRYVRFSPKVLSAAQAAVQGMPLE EVIGNILNGEWDHKRTKFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKADPKKSQE TWRKLAEANSELEKQLDMLSKLAKEHWDAYKCVIDSCSRLKPEKWMEGVTEPIKEAVV KALLQARDAMLGIRNHMRQMGEAAGIPIEPKSQTQLLDATMNMEGVLLAGVPGAGGFD AIFAVTLGDSSSNVTNAWSSHNVLGLLVREDPQGVSLESGDPRSWEITSGVSSVHIK" gene complement(33647907..33651401) /locus_tag="TCM_016613" /note="dbxref CacaoGD:Thecc1EG016613" mRNA complement(join(33647907..33649981,33650532..33650589, 33650920..33651000,33651088..33651401)) /locus_tag="TCM_016613" /product="Tetratricopeptide repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30068.m002662" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037020t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01780.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03168t00002" CDS complement(join(33648136..33649981,33650532..33650589, 33650920..33651000,33651088..33651214)) /locus_tag="TCM_016613" /note="paralog of Thecc1EG037020t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY25237.1" /db_xref="Phytozome:POPTR_0001s01780.1" /db_xref="TAIR:AT1G31920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU86" /translation="MHAENSECKGSQKKMEGSMRLSSWTPAIVRSILDQCLLSNKPVI LVFTKTSARATAAAMAQAFRILTPRVKHADIFLVEVTMGQEHIHRLVNHDVDNRMPGT SVLQQTKFFSLPADPPQSLELSLRLKEQECFSILKRCKNMEEFRQAHAQIVKWGFFWN SFCASNLVAACALSDGGSMDYACSIFQQIDEPGTFEFNTMIRAHVKDMTFEEALVFYY EMLEKGVEPDNFTYPALFKACACLQAQEEGKQIHGHAFKLGLESDLYVQNSLINMYGK CGEIEHSCAIFEQMDQKSVASWSAIIAAHASFGKWYECLMMFGNMSSEGCWRPEESTL VTVLSACTHLGALDLGKCTHGSLLRNISELNVIVQTSLMDMYVKCGCLEKGLSLFRKM GNRSQMSYTVMISGLAMHGHGEEALRIYSEMLKDGLDPDDVVYVGVLSACSHAGLVDE GFRCFDRMKSEHGITPTVQHYGCMVDLMGKAGMINEALEFIKSMPIKPNDVFWRSLLS ACRVHCNLEIGEIAAKHLFQSKSQNPGDYVILSNMYARAQRWQEVAKIRVEMARKGLH QVPGFSLVEVGRRIHKFVSQDTSHPQCVSVYEMIHQMEWQLKFEGYSPDTSQVLLDVD EEEKRQRLKGHSQKLAIAFALIHTSQGSPIRIARNLRMCNDCHTYTKLISLIYEREIT VRDRNRFHHFKDGTCSCRDYR" gene 33651651..33660423 /locus_tag="TCM_016614" /note="dbxref CacaoGD:Thecc1EG016614" mRNA join(33651651..33651770,33653803..33653865, 33654808..33655943,33656069..33656206,33656482..33656586, 33656666..33656845,33657391..33657568,33657867..33658114, 33658314..33658486,33658688..33659272,33659437..33660235) /locus_tag="TCM_016614" /product="Extra-large GTP-binding protein 3 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13695" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013017t1" /inference="similar to AA sequence:ricco:30068.m002662" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11827t1" mRNA join(33653615..33653865,33654808..33655943, 33656069..33656206,33656482..33656586,33656666..33656845, 33657391..33657568,33657867..33658114,33658314..33658486, 33658688..33660423) /locus_tag="TCM_016614" /product="Extra-large GTP-binding protein 3 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13695" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013017t1" /inference="similar to AA sequence:ricco:30068.m002662" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:PASA:2:TSA:puevd3b016052t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11827t1" mRNA join(33654770..33654807,33654932..33655943, 33656069..33656206,33656482..33656586,33656666..33656845, 33657391..33657568,33657867..33658114,33658314..33658486, 33658688..33659272,33659437..33660067,33660131..33660423) /locus_tag="TCM_016614" /product="Extra-large GTP-binding protein 3 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13695" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013017t1" /inference="similar to AA sequence:ricco:30068.m002662" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11827t1; alternateUTRof:Thecc1EG016614t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11827t1" CDS join(33654981..33655943,33656069..33656206, 33656482..33656586,33656666..33656845,33657391..33657568, 33657867..33658114,33658314..33658486,33658688..33659272, 33659437..33659512) /locus_tag="TCM_016614" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002662; paralog of Thecc1EG013017t1" /codon_start=1 /product="Extra-large GTP-binding protein 3 isoform 1" /protein_id="EOY25238.1" /db_xref="TAIR:AT1G31930.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C516" /translation="MEQKEGESWKELVRKMLPPGASLPEDSSELDYSIAMEYKGPPVA YEVPRVEPLDVNSRAIPTAEPLSESQRSVANAGPPVIEPIPLPVSYIAGVTSPPTQSP RVSASSESVVSVLQNPDFSSASPSASPGSVRNPQSNPPKQVNEVKRVPVVTFNTVERS ERKEVDLEKPVFPEYVGVSKEKKKKRRVCYRCGKRKWETKESCLVCDAKYCSNCVLRA MGSMPEGRKCVTCIGQPIDESKRYRLGKHSRLLSRLLSPLEVKQIMKAEKECSANQLR PEQLIVNGFPLKPEEMAELLGCPLPPRKLKPGRYWYDKESGLWGKEGEKPDRIISSNL NFTGKLMPDASNGNTEVYINGREITKLELRVLKLANVQCPRDTHFWVYDDGRYEEEGQ NNIRGNIWEKASTRFVSTLFSLPVLHGQPQGPREEASNYTTVPNYLEQKKIQKLLLLG LQGSGTSTIFKQAKFLYGNGFSADELQDIKLMIQSNMYRYLSILLDGRERFEEEAMCQ IRELGSDNQNCEANGEVDFGETNQCVYSINPRLKHFSDWLLDIIATGDLDAFFPAATR EYAPLVEELWKDPAIQQTYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAE GVTQGNGLAFIEFSLDDRSPMSETYTDNLEAPSQPLTKYQLIRVNAKGMNEGCKWVEM FEDVRVVVFCVALSDYDQMWIAPESSGSGALLQNKMMQTKELFETMIRHPCFKETPFV LILNKYDLFEDKVNRVPLSTCEWFNDFSPVRPLHNHQSLAQQAYFYIAVKFKDLYASL TGQKLFVWQARARDHRVTIDEAFKYIREVLKWEEEKDENYYGGEDSFYSTDISSSPFV RLILFHAWFISSFPKLRWSCLKVRF" CDS join(33654981..33655943,33656069..33656206, 33656482..33656586,33656666..33656845,33657391..33657568, 33657867..33658114,33658314..33658486,33658688..33659272, 33659437..33659512) /locus_tag="TCM_016614" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30068.m002662; paralog of Thecc1EG013017t1" /codon_start=1 /product="Extra-large GTP-binding protein 3 isoform 1" /protein_id="EOY25240.1" /db_xref="TAIR:AT1G31930.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C516" /translation="MEQKEGESWKELVRKMLPPGASLPEDSSELDYSIAMEYKGPPVA YEVPRVEPLDVNSRAIPTAEPLSESQRSVANAGPPVIEPIPLPVSYIAGVTSPPTQSP RVSASSESVVSVLQNPDFSSASPSASPGSVRNPQSNPPKQVNEVKRVPVVTFNTVERS ERKEVDLEKPVFPEYVGVSKEKKKKRRVCYRCGKRKWETKESCLVCDAKYCSNCVLRA MGSMPEGRKCVTCIGQPIDESKRYRLGKHSRLLSRLLSPLEVKQIMKAEKECSANQLR PEQLIVNGFPLKPEEMAELLGCPLPPRKLKPGRYWYDKESGLWGKEGEKPDRIISSNL NFTGKLMPDASNGNTEVYINGREITKLELRVLKLANVQCPRDTHFWVYDDGRYEEEGQ NNIRGNIWEKASTRFVSTLFSLPVLHGQPQGPREEASNYTTVPNYLEQKKIQKLLLLG LQGSGTSTIFKQAKFLYGNGFSADELQDIKLMIQSNMYRYLSILLDGRERFEEEAMCQ IRELGSDNQNCEANGEVDFGETNQCVYSINPRLKHFSDWLLDIIATGDLDAFFPAATR EYAPLVEELWKDPAIQQTYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAE GVTQGNGLAFIEFSLDDRSPMSETYTDNLEAPSQPLTKYQLIRVNAKGMNEGCKWVEM FEDVRVVVFCVALSDYDQMWIAPESSGSGALLQNKMMQTKELFETMIRHPCFKETPFV LILNKYDLFEDKVNRVPLSTCEWFNDFSPVRPLHNHQSLAQQAYFYIAVKFKDLYASL TGQKLFVWQARARDHRVTIDEAFKYIREVLKWEEEKDENYYGGEDSFYSTDISSSPFV RLILFHAWFISSFPKLRWSCLKVRF" CDS join(33654981..33655943,33656069..33656206, 33656482..33656586,33656666..33656845,33657391..33657568, 33657867..33658114,33658314..33658486,33658688..33659282) /locus_tag="TCM_016614" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002662; paralog of Thecc1EG013017t1" /codon_start=1 /product="Extra-large GTP-binding protein 3 isoform 2" /protein_id="EOY25239.1" /db_xref="TAIR:AT1G31930.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C516" /translation="MEQKEGESWKELVRKMLPPGASLPEDSSELDYSIAMEYKGPPVA YEVPRVEPLDVNSRAIPTAEPLSESQRSVANAGPPVIEPIPLPVSYIAGVTSPPTQSP RVSASSESVVSVLQNPDFSSASPSASPGSVRNPQSNPPKQVNEVKRVPVVTFNTVERS ERKEVDLEKPVFPEYVGVSKEKKKKRRVCYRCGKRKWETKESCLVCDAKYCSNCVLRA MGSMPEGRKCVTCIGQPIDESKRYRLGKHSRLLSRLLSPLEVKQIMKAEKECSANQLR PEQLIVNGFPLKPEEMAELLGCPLPPRKLKPGRYWYDKESGLWGKEGEKPDRIISSNL NFTGKLMPDASNGNTEVYINGREITKLELRVLKLANVQCPRDTHFWVYDDGRYEEEGQ NNIRGNIWEKASTRFVSTLFSLPVLHGQPQGPREEASNYTTVPNYLEQKKIQKLLLLG LQGSGTSTIFKQAKFLYGNGFSADELQDIKLMIQSNMYRYLSILLDGRERFEEEAMCQ IRELGSDNQNCEANGEVDFGETNQCVYSINPRLKHFSDWLLDIIATGDLDAFFPAATR EYAPLVEELWKDPAIQQTYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAE GVTQGNGLAFIEFSLDDRSPMSETYTDNLEAPSQPLTKYQLIRVNAKGMNEGCKWVEM FEDVRVVVFCVALSDYDQMWIAPESSGSGALLQNKMMQTKELFETMIRHPCFKETPFV LILNKYDLFEDKVNRVPLSTCEWFNDFSPVRPLHNHQSLAQQAYFYIAVKFKDLYASL TGQKLFVWQARARDHRVTIDEAFKYIREVLKWEEEKDENYYGGEDSFYSTDISSSPFV RQE" gene complement(33659563..33664462) /locus_tag="TCM_016615" /note="dbxref CacaoGD:Thecc1EG016615" mRNA complement(join(33659563..33660340,33660705..33660804, 33660906..33661102,33661765..33661845,33662938..33663384, 33664138..33664330)) /locus_tag="TCM_016615" /product="Proteasome component (PCI) domain protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01760.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01760.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05427t00001" CDS complement(join(33660155..33660340,33660705..33660804, 33660906..33661102,33661765..33661845,33662938..33663384, 33664138..33664287)) /locus_tag="TCM_016615" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Proteasome component (PCI) domain protein isoform 1" /protein_id="EOY25241.1" /db_xref="Phytozome:POPTR_0001s01760.1" /db_xref="TAIR:AT4G19006.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYA6" /translation="MAALEYLETLRNEHPELADWYNSLADLYQKKLWHQLTLKLEQFV ALTVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAICYLEGVIEK LQATREQRIEEPILYIKMQIAKFKLEQGDQKECKKLLEDGKSTLDSMTDIDPSVYASY YWVSSQYYKFRQEFAEFYKSALLYLAYTSVESLSESFKLDLAFDLSLSALLGDKIYNF GELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKK LLEKINILCLMEIIFSRPSEDRTIPLKVIAERTKLSIEDVEHLIMKSLSVHLIEGIID QVEGTVHVSWVQPRVLGIPQIKSLRDRLDNWVGKVHTAWLSIEAETPDLVAS" mRNA complement(join(33660287..33660673,33660735..33660804, 33660908..33661102,33661765..33661845,33662938..33663384, 33664138..33664462)) /locus_tag="TCM_016615" /product="Proteasome component (PCI) domain protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01760.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01760.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc342t8; inference alignment:Newbler:10:TSA:cgbaP2_g05427t00001" mRNA complement(join(33660584..33660804,33660906..33661102, 33661765..33661845,33662938..33663384,33664138..33664462)) /locus_tag="TCM_016615" /product="Proteasome component domain protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01760.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01760.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc342t7; inference alignment:Newbler:10:TSA:cgbaP2_g05427t00001" CDS complement(join(33660696..33660804,33660906..33661102, 33661765..33661845,33662938..33663384,33664138..33664287)) /locus_tag="TCM_016615" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Proteasome component domain protein isoform 2" /protein_id="EOY25242.1" /db_xref="Phytozome:POPTR_0001s01760.1" /db_xref="TAIR:AT5G45620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYA6" /translation="MAALEYLETLRNEHPELADWYNSLADLYQKKLWHQLTLKLEQFV ALTVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAICYLEGVIEK LQATREQRIEEPILYIKMQIAKFKLEQGDQKECKKLLEDGKSTLDSMTDIDPSVYASY YWVSSQYYKFRQEFAEFYKSALLYLAYTSVESLSESFKLDLAFDLSLSALLGDKIYNF GELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKK LLEKINILCLMEIIFSRPSEDRTIPLKVIAERTKLSIEDVEHLIMKSLSVS" CDS complement(join(33660760..33660804,33660908..33661102, 33661765..33661845,33662938..33663384,33664138..33664287)) /locus_tag="TCM_016615" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Proteasome component (PCI) domain protein isoform 3" /protein_id="EOY25243.1" /db_xref="Phytozome:POPTR_0001s01760.1" /db_xref="TAIR:AT4G19006.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYA6" /translation="MAALEYLETLRNEHPELADWYNSLADLYQKKLWHQLTLKLEQFV ALTVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAICYLEGVIEK LQATREQRIEEPILYIKMQIAKFKLEQGDQKECKKLLEDGKSTLDSMTDIDPSVYASY YWVSSQYYKFRQEFAEFYKSALLYLAYTSVESLSESFKLDLAFDLSLSALLGDKIYNF GELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKK LLEKINILCLMEIIFPPIRRSNYSIKSYC" gene 33665543..33666015 /locus_tag="TCM_016616" /note="dbxref CacaoGD:Thecc1EG016616" mRNA 33665543..33666015 /locus_tag="TCM_016616" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01750.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10342t1" CDS 33665570..33665800 /locus_tag="TCM_016616" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25244.1" /translation="MVSIKALLLFLLVFASLTTIHPAAAAAAAAATGVVGAGESHQQR KQRMNHGSFRGPRKHLLNPAVEHPLRLPKLPV" gene complement(33666699..33669020) /locus_tag="TCM_016617" /note="dbxref CacaoGD:Thecc1EG016617" mRNA complement(join(33666699..33666727,33666996..33667211, 33667680..33667856,33668653..33669020)) /locus_tag="TCM_016617" /product="ATP-dependent RNA helicase Dbp73D isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g01440.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01740.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc655t2_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc655t2_C2" mRNA complement(join(33666836..33667211,33667680..33667856, 33668653..33668973)) /locus_tag="TCM_016617" /product="ATP-dependent RNA helicase Dbp73D isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g01440.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01740.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12928t00001; alternateUTRof:Thecc1EG016617t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc655t2_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc678t7" CDS complement(join(33667002..33667211,33667680..33667856, 33668653..33668718)) /locus_tag="TCM_016617" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ATP-dependent RNA helicase Dbp73D isoform 1" /protein_id="EOY25245.1" /db_xref="Phytozome:POPTR_0001s01740.1" /db_xref="TAIR:AT1G31940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYV3" /translation="MVGIFSRFSVGRAGHRRSQSALEEREVMPPNPDVAASATAATAT THGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSASVIRRGDLPV MKDGDSLESEATGTKPRPTHSNRLILPSLSAPEHNFLNLLEECNASGI" CDS complement(join(33667002..33667211,33667680..33667856, 33668653..33668718)) /locus_tag="TCM_016617" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ATP-dependent RNA helicase Dbp73D isoform 1" /protein_id="EOY25246.1" /db_xref="Phytozome:POPTR_0001s01740.1" /db_xref="TAIR:AT1G31940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYV3" /translation="MVGIFSRFSVGRAGHRRSQSALEEREVMPPNPDVAASATAATAT THGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSASVIRRGDLPV MKDGDSLESEATGTKPRPTHSNRLILPSLSAPEHNFLNLLEECNASGI" gene 33671697..33675892 /locus_tag="TCM_016620" /note="dbxref CacaoGD:Thecc1EG016620" mRNA join(33671697..33671748,33672616..33674010, 33674242..33674503,33674602..33674715,33674841..33675892) /locus_tag="TCM_016620" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016754001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016622t1" /inference="similar to AA sequence:ricco:29628.m000756" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11668t1" CDS join(33672893..33674010,33674242..33674503, 33674602..33674715,33674841..33675101) /locus_tag="TCM_016620" /note="dbxref ricco:29628.m000756; paralog of Thecc1EG016622t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25247.1" /db_xref="TAIR:AT5G45480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SS00" /translation="MNGISEGLVFSLFLQSFLTFVVPFRMSTRKRPSIALIWCAYLIA DAAANYAIGLITNSQRTQSNPSGLTEDNDLLAFWAPFLLLHLGCPDTITAFSLEDNEL WLRHMLSLILQAVAALHVFIQSLTKNKLQVPTLLMLVTGVIKYAERIYALFLASLDRF RDSMLQKPDPGPDYARLMKKYTSMKEGNLPTRIIMVQEPEKEVKETKQGKLDDLEVVH YAYHFFETFKGLVVDLMFSIHARKESRDFFLAREPEDALRIIEVELTFINGVFYTKMK VMHSIVGYLFRFIALGSVLAALGLFYFEAEENEYDPFNVKITCILLIGAIALEVVAFL MLIFSDWTFASIKSPVRSISLLPLAAIFRGFLALRRPRWGSAANSVRGSKSYLQAVTE GEPEQPDATLLPPPSPSGYKICSGFIENENLHWLERALVGVCKKYSEPEDVEKLMRED GRNGISIRRVMPAVQTQALVPGDVGFLVHGSPFMHEVGQLCTILRNYGFFSINVQEFA PDCVADHPGRSKWKEFDCASSSSSEFSSKENHPCPMEADDARDAGESQRTRGRGKAPM TNEEIIGPFATKVTMQPI" mobile_element 33675812..33675969 /note="source:MITE_CACTA_30 1 156" /mobile_element_type="transposon:TIR/MITE" gene complement(33675894..33687312) /locus_tag="TCM_016621" /note="dbxref CacaoGD:Thecc1EG016621" mRNA complement(join(33675894..33675916,33677243..33677761, 33678621..33678714,33678865..33680679,33680770..33683421, 33684912..33684980,33685503..33685577,33685691..33686127, 33687037..33687312)) /locus_tag="TCM_016621" /product="Nbs-lrr resistance-like protein" /inference="alignment:exonerate-protein:2:frave:gene00460" /inference="similar to AA sequence:frave:gene00460" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1841t3" mobile_element 33675955..33675987 /note="source:MITE_CACTA_11 281 313" /mobile_element_type="transposon:TIR/MITE" CDS complement(join(33678917..33680679,33680770..33683421, 33684912..33684980,33685503..33685577,33685691..33685700)) /locus_tag="TCM_016621" /note="dbxref frave:gene00460" /codon_start=1 /product="Nbs-lrr resistance-like protein" /protein_id="EOY25248.1" /db_xref="TAIR:AT4G19050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZV0" /translation="MAQVIGKDEQSMKGKQSTAGEKQPKETPGKDGQSMKGQQSNVSE PQAKEIQEMEITTAKANKDDAEKLFKLLESGHSEEIVVLAGNAGSGKTWLAREITKFA TGAKGSFYMSLWISLNEKFDGLESPLHSIARQLRIPTSANVNVWEDVEYADDADNTDD KKKNVDDSKDPLTLKVKNKLYEENEEMRKAKSEAKHTCLLLVLDSEGVVMTNDYDNVV KELFHSDHNVKTELQASFHFKALITTKESKEAGSITKDTRSRVIEVQPFSGDEAVGFL KERVGKEVSDFPNFEIFCDAIKERSKVLPAQIIMLTEALNQIAEDGPEALERAFDIAA LNSLRRADKDDKALVHFAYEKLSGDCLIDCFWHSCYFLEKHGAVNYNELITHWILEGH LDLVVGLKKAYEKGYNVMMELIDRGMLKMREPNLIVLEGGTLRLEDHSCRGLFGKSKL GLASVLEGDNKKVFERMAPADGMIKTVRTDKEGKTVSSLLIEGSYLCREVPDTFFQEK EHLKVLAIFNPRLTFLPKPISKMENLLVLVLRDCYLLNDNMECIENLKALIVLEISGA PVLKELSEALFTNMNQLRSLNLSALRIKSLPASLSNLTELRRLILRQCSCLETLPKLA KLKNLEVIDLSGCSSLIRIQEKSFKSFEKLRVIDFSETKIEKLPIVQTLKHLTLLLAK GCDHLSGLRLMKHLPDLKVLDVSGATRIKEIQYDSFEGTDNLRILDLSKTDIRFLPDS LGKHLCDLKLKGCSKLEKLPSTKALTDLESLDLSDDSSLQKFPDRFFENLSSLQSLNL SHTKVKSLPALSNLHNLQRLFLKGCLFENLPELKELTSLVELDLSGCESLVNLPSLAD LKYLEIINLSSCKSLSGIDKSFQHMSWLQVLNVSETQIPSFPSLPNPSKLRSLILRNC TKLEESPDFQILVELEQLDLRGMQSSLSALTELQVLDLSGEAVESLPSLGGLSKLRQL LLRECSSLKELPSLNSGLEVLDLSGTKVKNLGEKISKLTNLKRLHLPEKVIEEFKGEN VKFLPLEVNLDRCCISEPSEIPKGGEKPSMVVHGTELLQSLKKDPTLLESISSISSVH SVKTHGRDEDNYDDSRRQIFSDIYSMIRKLPLEAKDGQFLEIRGFDDYPIDIEFVLEH AKYIMLVENQFLKNLSDLKPDSLKNMKGCWLERCSGMESIFAKADLEMEKPLEILWIS NLPNLKSLYQEEVQSLSFGNLKILYIDCCPTLETVFSSGQLPENLETLQIMFCDNLKN LFGAKDSAKSEPQTTSSADKEVDTTSSTKKEVQTTSAADKLPAKKEVQTTSAADKLPA KKEVQTKSSADKVSAKREVQSTISTDKEVQTTSSADKEAQTTISSDKEVQPTSSADKE VQTTASAKKDVQTMSSTDKQVQTMISAEKEVQTTSRSNLKHLHISHCPMLETVFSSAQ LPKRLEILRIKCCGKLKSFSGQELINLELPNLHTLHLLELPAWTASSISLKSNKSIPN VEVSPNIPVEKSLRSGNASKEITGADKN" mobile_element 33684863..33685014 /note="source:CACAO_Helitron_S_E29_scaffold_3 6717 6867" /mobile_element_type="transposon:Helitron" mobile_element 33685434..33685604 /note="source:CACAO_Helitron_S_E29_scaffold_3 6702 6867" /mobile_element_type="transposon:Helitron" gene 33687407..33690911 /locus_tag="TCM_016622" /note="dbxref CacaoGD:Thecc1EG016622" mRNA 33687407..33690911 /locus_tag="TCM_016622" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016754001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016663t1" /inference="similar to AA sequence:ricco:29628.m000756" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3098t1" CDS 33687675..33690077 /locus_tag="TCM_016622" /note="dbxref ricco:29628.m000756; paralog of Thecc1EG016663t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25249.1" /db_xref="TAIR:AT5G45480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SS00" /translation="MVHISLTIPFGVKKLWDKWNIRGSILFSLWLQVVLIFVAPIRKS ARKTWVILLIWFAYLLADAAANFAVGLISNSQRNQSNNRNQPNPTESTDLLAFWAPFL LLHLGGPDTITAFALEDNQLWLRHLLSLGFQAGAVLYVFVQSLPNENLWIPTALMFVA GIIKYVERTRALFLASLDQFRDSMLKDPDPGPNYAKLMEEYASKKDAKLPTRINMTPE PDKESKASDVPPKEGDLNHLEVVHYAYDYFQIFKGLVVDLIFSFRERDESRDFFTRRT AEDALRIIEVELNFLYGTLYTKMEVVHSTIGYIFRFIAFAANLATLGIFYFQTKKDEF HGVDIGITYTLLLGAVALDVVAFLMLIFSDRTFASIFKYLESPYCRPIAAFFGGFLAL KKPRWHRCKKCGIQNSDHRHHALVTPLGFRRWSGSISAHNLIRYCLKSRRTTIHEFPS LWVIMFEKIHHLLGIDKVIKKVGDGMTKIKGKISPCNTSLPNKVVSSNSSGLPGSIII SKVIRFLKCIEEKVNQFFSWAFKKITKPVKDLVDEMMYVSSEPFTLELWKFIFEELKT KSEFADTPETAKRISSARGDWVLTDTDSANDRSKLLKYVSDVPYDESLLLWHIATDLC YNTDTEEEAEKEFSKILSDYMLYLLIFQPSMMSAVAGIGKIRYRDTCAEAQRFFERRS LRPNADNKACEEILSVNTDVEPVTVKGDRSKSVLFDASMLAQELKRLERKDRWKLICR VWVELVSYAASHCRASTHAQRVSKGGELITFFWLLMAHFGLGEQFQINEGHARAKLLV GK" mobile_element complement(33690911..33690952) /note="source:CACAO_M_E57478_F378_scaffold_9 1455 1496" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33691523..33691661 /note="source:scaffold_4_CACTA_0482 7604 7725" /mobile_element_type="transposon:TIR/CACTA" gene 33691542..33694481 /locus_tag="TCM_016623" /note="dbxref CacaoGD:Thecc1EG016623" mRNA 33691542..33694481 /locus_tag="TCM_016623" /product="Leucine-rich repeat family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G45520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016664t1" /inference="similar to AA sequence:TAIR:AT5G45520.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3936t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11688t1" CDS 33691926..33694373 /locus_tag="TCM_016623" /note="paralog of Thecc1EG016664t1" /codon_start=1 /product="Leucine-rich repeat family protein, putative" /protein_id="EOY25250.1" /db_xref="TAIR:AT5G45520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHI4" /translation="MSSSKGDSVQHTDAAATISIQSIIDKLTDLRKLLDEKVIKGDVP DRGSQEGGIKLAPSEDGQAKLNTDLEKVCKELDYMIRAFDKLKKFEGDLKEPLKTLDN NVNDILKDLEVLKSSSGSLKQIQQNLKVLRSNITKVKIQIPLQHQASNLISDASRYLQ ATVASREEGDLPNLYEAAKILEIKGSFYEEIQDKYNGLDKKALKLCLLCFAIFPENAE IKKSLLRFWWFGERLMENPIVTGEKQNMDRVNDILGELIKKGFIEPVEKKSRLPATRY KMHPIVRSLLIKLAKEANFFDYDAKGIPTMDVSASKKSCLIKSEGHSHWFSKNPFQEG EEQKINPGDQQKTNSKGRQQKNSKKQQQTNQEKQQPTSSENQQKTYQENQRKQKELLK NLEELQTLFNISKQFPDLPEEKFSKIKGVRVLYLGRWESTAERHMEVESTEFLKGLEK MKELRFFSLQGISGISTLPKSLGKLINLRILDLRACHNLEELPKELGLLKKLTYLDMS ECYLIDNMPKQLTSLSELQVLKGFVISKNRHSCTFGNLTTLSKLKKLTINVNSDEFSI DKAEGDLCRFQALRKLRIAWGAGSSKLIDGNKDEKKGNGNQETNGNKRKFHERQQNDA AKSMLSNLKMPWGACGEGTSKSVAEKKVTATTEKSTLEGKDEIRKIDYGKQESSEGKK QGSDAAKSGAKNLNDNKDAGKQKTEEAISLEKLDLQCFPRPEPPSWLVPEKLESLKSL YIRGGRLSYLGEPKGSKKWEVETLRLKYLTGVQINWKDLQTQFPKLTYLERVNCPGIT FCPCDANGVWRNLEKEK" gene complement(33694421..33696196) /locus_tag="TCM_016624" /note="dbxref CacaoGD:Thecc1EG016624" mRNA complement(join(33694421..33694955,33695050..33696196)) /locus_tag="TCM_016624" /product="Zinc ion binding,nucleic acid binding-like protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g08280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012370t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01170.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS complement(join(33694541..33694955,33695050..33695747)) /locus_tag="TCM_016624" /note="paralog of Thecc1EG012370t1" /codon_start=1 /product="Zinc ion binding,nucleic acid binding-like protein" /protein_id="EOY25251.1" /db_xref="Phytozome:POPTR_0005s01170.1" /db_xref="TAIR:AT2G01050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4NCH1" /translation="MLSNEKIEVNRTDAPKTTMQASYRSMWLHNHNIESFGESESEEE GEILEDVDSDDDNFDGIADGPYIRLSKEDKRRIRRPWRNAFIVKLLGRNINYTYLCIR VKQLWSLIGDFQVVDLDNGFYCVRFSNKSDFDHVLTEGPWFIAGHYLSTIRRWTLEFC SNEASVDSIAAWIRLPGMPLEYYDSGILSRIGNELGKTLKVDRTTAYASRGKFAKMCV ELHLNKPLVSKVYRRQEQEGITEEQAQKTNQNCGDQEKDFVSTKFGPWMVAKKTYRRN NGLRAEGGLNLKSKVASQKGNMKAKQNIGTRFYLLDEDVSAPSDNEIIPESLEHVVLE TVKLAAKKNKEVMRNEEELKKSLQAFASIRAITFVN" mobile_element complement(33696177..33696309) /note="source:scaffold_7_CACTA_0795 2892 2992" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33696541..33696839) /note="source:CACAO_hAT_E410_scaffold_1 2236 2522" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(33696580..33696871) /note="source:scaffold_5_CACTA_0607 4586 4843" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33696840..33697229) /note="source:scaffold_5_CACTA_0607 4422 4817" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33696931..33697728 /note="source:scaffold_9_CACTA_0934 14071 14866" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33698685..33698770 /note="source:scaffold_1_CACTA_0005 6268 6353" /mobile_element_type="transposon:TIR/CACTA" gene complement(33700460..33701432) /locus_tag="TCM_016625" /note="dbxref CacaoGD:Thecc1EG016625" mRNA complement(join(33700460..33701212,33701308..33701432)) /locus_tag="TCM_016625" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043935t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(33700680..33701183) /locus_tag="TCM_016625" /note="paralog of Thecc1EG043935t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25252.1" /translation="MLSEIVVSQESCGYKSNRLGLERTFQNLCLKEWVLVNMSNYTMV DNIPLAVLFVYTLWFIWYWRNLTIFNASFSWPYNDWQPISWDTMRRAQSRMKSEIMIS WEKRNHSFVKLNVDGSAQGQSGLAAAGGLIMDEYGHWIVGFTYKIGITFSLTTELWAM YHGLKLC" gene complement(33701797..33705481) /locus_tag="TCM_016626" /note="dbxref CacaoGD:Thecc1EG016626" mRNA complement(join(33701797..33704038,33704149..33704487, 33705331..33705481)) /locus_tag="TCM_016626" /product="NBS resistance-like protein" /inference="alignment:exonerate-protein:2:frave:gene00463" /inference="similar to AA sequence:Phytozome:POPTR_0011s04050.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11692t1" CDS complement(33702345..33703991) /locus_tag="TCM_016626" /codon_start=1 /product="NBS resistance-like protein" /protein_id="EOY25253.1" /db_xref="Phytozome:POPTR_0011s04050.1" /db_xref="TAIR:AT5G45490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYP1" /translation="MMSSVRHGSNTPRKKALYDQFLDELPADDETPSKWRIPGLGHSR SPSTGSTDDSNKGEEGVSEGESIASPRPMPDTKEFLEKIYEPVGRSKVHGFDYDIMSL KMLLLDERSQYSFKLVGVVGMLGVGKTTLCRLILDEEEVKQRFVPRFWITMPSDEEPN SLEKVVERMLERLGVEEEIITSISKNHELPGLLYALHLHLKGKRYLILLDGVRAKDDY YEHLISCLRDGHGFPKAYGGAVMVTSRDEEAVKTMVGEQNLHRLLPLSNPDSCWPIYQ NLDSVAQVSGSEASKEVKEELLKKCGGLPLAARILRELKDLEKKQKDGSIQAPAASKE GPTQASTASNEVSSQASTASEEGPIQASAASKEGPTQAPAASKEGSNEASAASNEGPI QASAASNEGPIQASAASNEGPIQASAASKEGSNEASAASKEGPIQASAASKEVSSQAS AASKEVSSQASIASKEDSNEGSAASKEDPNQASAASKEVSSQASAASKEASAASKEDL NQASAASKEVSSQASAASKEDSNQASTASNESDLKPATTD" mobile_element 33705495..33705623 /note="source:scaffold_6_CACTA_0717 7013 7173" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33706161..33706478 /note="source:CACAO_on_E175_scaffold_1 439 747" /mobile_element_type="transposon:TIR/hAT" mobile_element 33706392..33706578 /note="source:INTACT51_F23_scaffold_9-int 5257 5439" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33706544..33706996) /note="source:CACAO_on_S_E390_scaffold_9 2391 2850" /mobile_element_type="transposon:TIR/Mutator" gene 33706868..33713350 /locus_tag="TCM_016627" /note="dbxref CacaoGD:Thecc1EG016627" mRNA join(33706868..33707503,33707730..33707768, 33707988..33708103,33708349..33708440,33708543..33708856, 33709479..33709547,33710361..33710443,33710685..33710787, 33710849..33711195,33711284..33711390,33711681..33711829, 33712197..33712393,33712755..33713350) /locus_tag="TCM_016627" /product="Dimerizations, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01720.1" /inference="similar to AA sequence:ricco:30068.m002666" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc480t5" CDS join(33707156..33707503,33707730..33707768, 33707988..33708103,33708349..33708440,33708543..33708856, 33709479..33709547,33710361..33710443,33710685..33710787, 33710849..33711195,33711284..33711390,33711681..33711829, 33712197..33712393,33712755..33713010) /locus_tag="TCM_016627" /note="dbxref ricco:30068.m002666" /codon_start=1 /product="Dimerizations, putative" /protein_id="EOY25254.1" /db_xref="TAIR:AT5G45610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZL1" /translation="MSEENLEEWDASFLEELIQVEELALSSSSVTQNNPPSSSYLRPL PPPSDEPLHFPPPSRIDSLSYSPPRELSQRTADVGGAFTSNGVVAKSATPSTPVRCVR GSDNAKDLEIERLKKELGRVSKQLANLEHECFKLKKERNKEDQLTFADSRNEVKVANF HGSRIANLEHGIPVAEHHGVRQELPNAKAFDDQIGLHTAKSSCKAIGVQADLNTCLDL SKKLQDIWGLPSDQQFGRNLISKLFAVCSKDINVLFGFISISSPSKTMEPLAVKSSVD MALQHSMQPFHSSEAAKVSRFYSALTKIGNGMSQLEALFESLFDLCSVENVVIVYSSL CILYVLLKHLLTFERKSEGSFCQYALSDIALYFTFPFIYCLLFIMLEMLYALVKCTLI RDNFLAECLHSGSSIDDIFGCETRGRDCVGMDGTYGSCMPTGVRPSEAETLCKKGHCS TGSSLLFSCINWIYLFESMHHIVMKSSEECVRLKAVSIMNVILMRTDAYTDREKFGLI QVFGSISQLLRKEAGLLAQKEAVHTLHLLLNCPKLVVTFCCGCTVAAGADTDKENTAA FQEFTLILQGLADCIACSGNSLQALELRKNAITLLAFIASSGKFGFEILVNYKLSGEA NFLTLILQLLVSEIDLEASVYPESGETFRARTLLIREVLILLNRLVSNPVHSATVLRL LTNSRDMVSLTIDVANRLSRKEPKRRHSDSITKQMRESEIVDLGQIFKRRVSTYLGE" gene complement(33712819..33716342) /locus_tag="TCM_016628" /note="dbxref CacaoGD:Thecc1EG016628" mRNA complement(33712819..33716342) /locus_tag="TCM_016628" /product="Nbs-lrr resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016629t1" /inference="similar to AA sequence:frave:gene13687" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11761t4" CDS complement(33713446..33716286) /locus_tag="TCM_016628" /note="dbxref frave:gene13687; paralog of Thecc1EG016629t1" /codon_start=1 /product="Nbs-lrr resistance protein, putative" /protein_id="EOY25255.1" /db_xref="TAIR:AT3G07040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU97" /translation="MAEIAVSFLLENLTLFLQNEVELSQGIPEDVEYIKDELRSMKAV LRVADSMGESNEELRVWVQQVREIAYDIEDILDEYKLDLVNDRRHGIDAFLYNVCCFT KKLKAQHRIAPKLRGIRSRIDTISARRPNYDGKGTIELGPSSTTTDNPWLDGRGDALL LDSVDLVGIDGSKVQLINWLVERNSGRKVISVVGMGGSGKTTLVKQVYDNANVKKHFD VHVWVTISRPFKIEELLRNMVRQLFDAIRKPVPKRVNDMNSVHDLKKVVKDFLQRRRY LIVLDDVWHMNEWDVVNYALANNDRGSRVLLTTRNSGVASTSCIESEDKVFNLEPLPP DESWILFCKKCFRQEPCPPELEKHSRRILEKCEGLPLAIVAIGGVLATKRRTIAEWET VYLSLGAEIEDNSRLMNFKEVLLLSFNDLPYHLKSCFLYLSIFPENHLIESMRLIRLW IAEGFVEVKEGKTQEEVAEDYLNELLNRSMIQIAGTTNDGRVKTCRIHDLLREIIISN ARDQNFVAVSKEHNATWPDKVRRLAIHNAFPNAQENRNVSHLRSLLMFGMGDPLSCSP TKTLFPDGCRLLKVLDLRAAPLQTFPQEVINLKLLSYLSLRDTNIKTIPSSIVKLQAL ETLDLKHSQVSNLPVEILQLRRLRHLLVYRYEFTAYSRFHSKYGFQALSGIGALQSLQ KLSFMEVNHDDALIIELGKLVQLRRLGITNLRKEDGKLLCSSIQKLTKLRALSIVSSV KEEFVDLQHLSSPPQLLQRLYLYGRLEKIPDWIPSLHSLVVLYLKWSRLPDDALESLQ NLPNLIHLELLQATQGDTLRFKAGGFTKLKILGIDKFEGLKCIEMEKGAMPCLENLSI QRCKLLERVPLGIEYLAKLKVLEFFDMPEELIMTLLPDAQRGDYSKVANIPEVHYTYW RNGEWEVYFIESSGEREHNTVISSDTLQTRFK" gene complement(33716585..33720342) /locus_tag="TCM_016629" /note="dbxref CacaoGD:Thecc1EG016629" mRNA complement(33716585..33720342) /locus_tag="TCM_016629" /product="Nbs-lrr resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016628t1" /inference="similar to AA sequence:frave:gene13687" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS complement(33717471..33720314) /locus_tag="TCM_016629" /note="dbxref frave:gene13687; paralog of Thecc1EG016628t1" /codon_start=1 /product="Nbs-lrr resistance protein, putative" /protein_id="EOY25256.1" /db_xref="TAIR:AT3G07040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU97" /translation="MAEIAVEFILEKIASFLQNEIASFLQNEIQILQGVPEELEYIRD DLQRMKASLRAADLVEDSDHQLKEWVRQVRDIAYDIEDVIDGFNFHHADQHGHRIHGF LYHFCCFVKNLEGYHQTADKLRKIRSRIRNVSAWQLNNAINLSTTDQGSSSMTTSDAL ILDSADLVGIDESKELLVRWLVERNPGRKVLSVVGMGGLGKTTLVKQVYDDERVKKHF DVHVWIALSHPFKMEDFLRNIVQQLFSAIRKPVPEGIDDMNSDWLKVVIKPFLRQWRY LIVLDNVWHINQWHAVNHAFAKNDSNRVMITTRNTDVAIASCLESDDMVFNIEPLSSD YSWDLFCRRSFRGNTCPPYLVEVSRRILEKCEGLPLAIVAISGLLSTKTGTPAEWETI YRSLGAIIKDNDKLMNLTEVLSLSFKYLPYHLKSCFLYLSIFPDNYLIERMRLIRLWI AEGFVEVKEGKTQEEVAEDYLNELLSRSLVQVFGRTSDGRVKTCRIHDLLREIIISKS RDQNFAAIAKDKNGAWPDKVRRLSLHNSLQNVQHNRNVSHLRSFFMFEVEDPLLSAPL HSLYPDGFRLLKVLDLRAARLQTFPGEIINLFLLRYLSLRETKVNSIPSSIGKLQNLQ TLDLKHTNVTELPVEILKLQQLRHLLVYRYEFKYYSRFHSKYGFKALAGIGALQSLQK LCFIEADHRNASILEEVGKLTQLRRLGIMNLRKEDGMALCSSIQKLTNLQALSVVSSV KDEVIDLHHLASPPQLLERLYLTGRLEQLPDWIPRLQSLVIVYLKWSRLEDDPLLSLQ HLSNLVHLELLQVSIGDTLSFKAGGFQKLKVLGIDKFDELRCIEMEEGAMPVIEKLSI LRCKSLETVPFGIEHLTTLKVLEFFDMPEELIKTLSPNAKGGDYRKVARIPEVYYTYC RDGEWEVYSLESSGKRVLSVETVESHLESIVKK" gene 33721385..33727546 /locus_tag="TCM_016630" /note="dbxref CacaoGD:Thecc1EG016630" mRNA join(33721385..33721913,33724028..33727546) /locus_tag="TCM_016630" /product="Nbs-lrr resistance protein" /inference="alignment:exonerate-protein:2:frave:gene13687" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016632t1" /inference="similar to AA sequence:frave:gene13687" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc4027t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc5281t1" CDS 33724338..33727181 /locus_tag="TCM_016630" /note="dbxref frave:gene13687; paralog of Thecc1EG016632t1" /codon_start=1 /product="Nbs-lrr resistance protein" /protein_id="EOY25257.1" /db_xref="TAIR:AT3G07040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU97" /translation="MAESAVHFVLKKLAPFFEKGMQLLVGGREGVAYVRGELERMRAF LRVADMLEETDEEVKVWVRQIRDVAHDIEDILDEYMLLLTHNHGEGLYGFLHKMSCCV RNMKAQYRIASEIQGINSRIRNICEGHRRLRLKFCADERSSANGVDNTWQDRRGDALL LDKADVVGIDEPKMKLVGWLVDGGSDYKVISLSGMGGLGKTTLAKQVYDDPEVKKHFK VHAWITVSQSFKLEGLLKDMVQQLSRVITKPVPEGVDSMSSYQLKTIIKNLLRKRRYL IILDDIWRINEWDAIKFALPANDCGSRVMLTTRNADLAFSSRIESEGEVYNLEPLPPE VSWTLFCKKTFRGNYCPPYLEEICKQILKKCEGLPLAIVAISGVLATKSKRRIDEWEM VGRSLGAEIDGNDKLMNLKKVLSLSFNDLPYYLKSCFLYLSIFPEDRPIELMRLIRLW TAEGFVEVKQGKTQEEVAEDFFNELLNRSLIQVAGTTSDGRVKSCRIHDLLREIIILK SREQNFAAITKEQNAMWPDKVRRLSIHNTLQNVLQNRFVSQLRSLFMFGVEENPSLHG LIPGGFRLLAVLDLQATSIMKFPVEVVNLYYLKYLNLRETKVTVVPRFIGKLQNLETL DLKHAYVTELPVEILQLQRLRHLLVYRYEFESYDHFHSKYGFKALERIGDLQSLQKLC YIEVDQGSVILAELGKLTQLRRLGITKLRKEDGKKLCSSIQNLSSLRALSIISIEEDE IIDVQHLISPPPLLQRLYLRGRLETLPHWIPYLHSLVKVYLKWSRLAEDPLASLQNLP NLVHLELVQVYDGETLCFKAGGFKMLKHLGLDKFDELKWVQVQVGAMPCVQKLSIQRC KSMEKVPLGIEYLTKLNVLEFFDMPHELIRTLRLDEHGEDYWRVAHIPEVYSTYWRDG AWEVYSLESFSEGESSPRPNTVICSQDLHARWK" mobile_element complement(33727466..33728116) /note="source:CACAO_on_E683_scaffold_9 1219 2303" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(33728117..33728317) /note="source:scaffold_4_CACTA_0511 2485 2712" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33728318..33728330) /note="source:CACAO_on_E683_scaffold_9 1194 1218" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(33730070..33730365) /note="source:INTACT135F_F90_scaffold_2-int 13690 13997" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33730366..33730424) /note="source:scaffold_1_CACTA_0008 6586 6962" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33731592..33731680 /note="source:scaffold_5_CACTA_0580 5401 5489" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33731621..33731685 /note="source:CACAO_Helitron_E81_scaffold_3 1220 1376" /mobile_element_type="transposon:Helitron" mobile_element complement(33731686..33731835) /note="source:scaffold_9_CACTA_0943 5684 5848" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33731821..33731904 /note="source:scaffold_5_CACTA_0614 3382 3466" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33731836..33731864 /note="source:CACAO_Helitron_E81_scaffold_3 1377 1451" /mobile_element_type="transposon:Helitron" mobile_element 33734145..33740467 /note="source:INTACT579_F10_scaffold_3-int 1 6323" /mobile_element_type="retrotransposon:LTR/Copia" gene 33741036..33745540 /locus_tag="TCM_016632" /note="dbxref CacaoGD:Thecc1EG016632" mRNA join(33741036..33743994,33745147..33745540) /locus_tag="TCM_016632" /product="Nbs-lrr resistance protein" /inference="alignment:exonerate- protein:2:frave:gene13687.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016630t1" /inference="similar to AA sequence:frave:gene13687" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS 33741119..33743962 /locus_tag="TCM_016632" /note="dbxref frave:gene13687; paralog of Thecc1EG016630t1" /codon_start=1 /product="Nbs-lrr resistance protein" /protein_id="EOY25258.1" /db_xref="TAIR:AT3G07040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU97" /translation="MAESAVHFVLEKLAPFFEKGMQLLVGGREGVAYVRGELERMRAF LRVADALEETDEEVKVWVKQIRDVAHDIEDILDEYMLLLTHNHGEGLYGFLHKMSCCV RNMKAQYRIASEIQGINSRIRNICEGHRRLRQKFCADERSSSNGAGNTWQDRRGDALL LDKTDVVGIDEPKKKLVGWLVNGASDFKVISLSGMGGLGKTTLAKQVYDDPEVKKHFK VHAWITVSQSFKLEGLLKDMVQQLSRVITKPVPEGVDSMSSYQLKTIIKNLLRKRRYL IILDDVWRINEWDAIKFALPANDCGSRVMLTTRNADLAFSSRIESEGEVYNLEPLPPE VSWTLFCRKTFGGNYCPPYLEEICKQILKKCEGLPLAIVAISGVLATKSKRRIDEWEM VGRSLGAEIDGNDKLMNLKKVLSLSFNDLPYYLKSCFLYLSIFPEDRPIELMRLIRLW TAEGFVEVKQGKTQEEVAEDFFNELLNRSLIQVAGTTSDGRVKSCRIHDLLREIIILK SREQNFAAIAKEQNAMWPDKVRRLSIHNTLQNVLQNRFVSRLRSLFMFGVEENPSLRR LIPGGFRLLAVLDLQATPITKFPVEVVNLYYLKYLSLRETKITVVPRFIGKLQNLETL DLKHAYATELPVEILQLQRLRHLLVYRYEFESYDHFHSKYGFKAPERIGSLQSLQKLC HIEVDQGSVTLAELGKLTQLRRLGITKLRKEDGKKLCSSIQNLSSLRSLSIISIEEDE IIDVQHLISPPPLLQRLYLRGRLETLPHWIPSLHSLVKVYLKWSRLAEDPLASLQSLP NLVHLELVQVYDGETLCFKAGGFKMLKHLGLDKFDELKWVQVQVGAMPRVQKLSIQRC KSMEKVPLGIEYLTKLNVLEFFDMPHEFIRTLRLDEHGEDYWRVAHIPEVYSTYWRDG AWEVYSLESFSEGESSPRADTVICCQDLHARWK" gene complement(33745577..33751111) /locus_tag="TCM_016633" /note="dbxref CacaoGD:Thecc1EG016633" mRNA complement(join(33745577..33746600,33746721..33746813, 33747002..33747166,33747364..33747457,33747921..33747989, 33748493..33748560,33748650..33748706,33748780..33748865, 33749084..33749162,33749421..33749501,33749958..33750065, 33750186..33750304,33750406..33751111)) /locus_tag="TCM_016633" /product="DEA(D/H)-box RNA helicase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011527001.3" /inference="similar to AA sequence:Phytozome:GSVIVT01011527001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05344t00001" mRNA complement(join(33746183..33746600,33746721..33746813, 33747002..33747110,33747118..33747166,33747354..33747457, 33747921..33747989,33748493..33748560,33748650..33748706, 33748780..33748865,33749084..33749162,33749421..33749501, 33749958..33750065,33750186..33750304,33750406..33751074)) /locus_tag="TCM_016633" /product="DEA(D/H)-box RNA helicase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011527001.3" /inference="similar to AA sequence:Phytozome:Glyma09g34390.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc205t20; inference alignment:Newbler:10:TSA:cgbaB_g05344t00001" mRNA complement(join(33746209..33746602,33747421..33747457, 33747921..33747989,33748493..33748560,33748650..33748706, 33748780..33748865,33749084..33749162,33749421..33749501, 33749958..33750065,33750186..33750304,33750406..33751074)) /locus_tag="TCM_016633" /product="DEA(D/H)-box RNA helicase family protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011527001.3" /inference="similar to AA sequence:Phytozome:GSVIVT01011527001" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc209t17_C1; inference alignment:Newbler:10:TSA:cgbaB_g05344t00001" mRNA complement(join(33746229..33746600,33746721..33746813, 33747002..33747166,33747364..33747457,33747921..33747989, 33748493..33748560,33748650..33748706,33748780..33748865, 33749084..33749162,33749421..33749501,33749958..33750065, 33750186..33750304,33750406..33750645)) /locus_tag="TCM_016633" /product="DEAD-box ATP-dependent RNA helicase 5 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011527001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029008t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011527001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05637t00001; inference alignment:Newbler:10:TSA:cgbaB_g05344t00001" CDS complement(join(33746505..33746600,33746721..33746813, 33747002..33747166,33747364..33747457,33747921..33747989, 33748493..33748560,33748650..33748706,33748780..33748865, 33749084..33749162,33749421..33749501,33749958..33750065, 33750186..33750304,33750406..33750943)) /locus_tag="TCM_016633" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 1" /protein_id="EOY25259.1" /db_xref="Phytozome:GSVIVT01011527001" /db_xref="TAIR:AT1G31970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YS30" /translation="MTASTEPLAPESMSDQTIKKKNKKKNKLAKLEDQREENVKQKPQ ETEEIELRKKDKKKRKKGKESESQASHEESADEPKRKKKKEKKEQKQEEENGEFSETQ KIKQDSVQFDGEEKVVVSGKDAEEAKYAPMKSFADSKLPKNVLNCCKDFKSPSPIQAH AWPFLLNGRDFIGIAKTGSGKTLAFGVPAMMHVLDKRKRVKNKNPLCLVLSPTRELAE QIFNVMCNAGQSCDVKSVCLYGGTSKGPQISSLNSGVDIVIGTPGRLKDLMNMEVCQL KDVSFVVLDEADRMLDMGFEDDVRFILGRTCSARQMVMFSATWPAAVHRLAQEYMDPN PVKVVIGSEDLAANHDVMQIVEVLDDRSRYERLTALLKKYHESKRNRVLVFVLYKAEA GRIENMLQRSGWNVVSIHGGKAQHERTNALSLFKDGSSPLMVATDVAARGLDIPDVEV VINYSFPLTTEDYVHRIGRTGRAGRKGVAHTFFTQQNKGLAGELVNVLKEAGQIVPPA LLKFGTHVKKKESKLYGAHFKEIAANAPKAKKITFDNSDDEN" CDS complement(join(33746505..33746600,33746721..33746813, 33747002..33747166,33747364..33747457,33747921..33747989, 33748493..33748560,33748650..33748706,33748780..33748865, 33749084..33749162,33749421..33749501,33749958..33750065, 33750186..33750304,33750406..33750550)) /locus_tag="TCM_016633" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG029008t1" /codon_start=1 /product="DEAD-box ATP-dependent RNA helicase 5 isoform 4" /protein_id="EOY25262.1" /db_xref="Phytozome:GSVIVT01011527001" /db_xref="TAIR:AT1G31970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YS30" /translation="MKSFADSKLPKNVLNCCKDFKSPSPIQAHAWPFLLNGRDFIGIA KTGSGKTLAFGVPAMMHVLDKRKRVKNKNPLCLVLSPTRELAEQIFNVMCNAGQSCDV KSVCLYGGTSKGPQISSLNSGVDIVIGTPGRLKDLMNMEVCQLKDVSFVVLDEADRML DMGFEDDVRFILGRTCSARQMVMFSATWPAAVHRLAQEYMDPNPVKVVIGSEDLAANH DVMQIVEVLDDRSRYERLTALLKKYHESKRNRVLVFVLYKAEAGRIENMLQRSGWNVV SIHGGKAQHERTNALSLFKDGSSPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVH RIGRTGRAGRKGVAHTFFTQQNKGLAGELVNVLKEAGQIVPPALLKFGTHVKKKESKL YGAHFKEIAANAPKAKKITFDNSDDEN" CDS complement(join(33746534..33746602,33747421..33747457, 33747921..33747989,33748493..33748560,33748650..33748706, 33748780..33748865,33749084..33749162,33749421..33749501, 33749958..33750065,33750186..33750304,33750406..33750943)) /locus_tag="TCM_016633" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 7" /protein_id="EOY25265.1" /db_xref="Phytozome:GSVIVT01011527001" /db_xref="TAIR:AT1G31970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YS30" /translation="MTASTEPLAPESMSDQTIKKKNKKKNKLAKLEDQREENVKQKPQ ETEEIELRKKDKKKRKKGKESESQASHEESADEPKRKKKKEKKEQKQEEENGEFSETQ KIKQDSVQFDGEEKVVVSGKDAEEAKYAPMKSFADSKLPKNVLNCCKDFKSPSPIQAH AWPFLLNGRDFIGIAKTGSGKTLAFGVPAMMHVLDKRKRVKNKNPLCLVLSPTRELAE QIFNVMCNAGQSCDVKSVCLYGGTSKGPQISSLNSGVDIVIGTPGRLKDLMNMEVCQL KDVSFVVLDEADRMLDMGFEDDVRFILGRTCSARQMVMFSATWPAAVHRLAQEYMDPN PVKVVIGSEDLAANHDVMQIVEVLDDRSRYERLTALLKKYHESKRNRVLVFVLYKAEA GRIENMLQRSGWNVVSIHGGKARSPSSTGLTSRKSLLMLQRLRK" mRNA complement(join(33746539..33746600,33746721..33746833, 33747002..33747166,33747364..33747457,33747921..33747989, 33748493..33748560,33748650..33748706,33748780..33748865, 33749084..33749162,33749421..33749501,33749958..33750065, 33750186..33750304,33750406..33751074)) /locus_tag="TCM_016633" /product="DEA(D/H)-box RNA helicase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011527001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029008t1" /inference="similar to AA sequence:Phytozome:Glyma09g34390.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc215t1; inference alignment:Newbler:10:TSA:cgbaB_g05344t00001" mRNA complement(join(33746539..33746600,33746721..33746813, 33747002..33747457,33747921..33747989,33748493..33748560, 33748650..33748706,33748780..33748865,33749084..33749162, 33749421..33749501,33749958..33750065,33750186..33750304, 33750406..33751074)) /locus_tag="TCM_016633" /product="DEA(D/H)-box RNA helicase family protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011527001.3" /inference="similar to AA sequence:Phytozome:Glyma09g34390.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc215t6; inference alignment:Newbler:10:TSA:cgbaB_g05344t00001" mRNA complement(join(33746786..33746830,33747002..33747166, 33747364..33747457,33747921..33747989,33748493..33748560, 33748650..33748706,33748780..33748865,33749084..33749162, 33749421..33749501,33749958..33750065,33750186..33750304, 33750406..33751074)) /locus_tag="TCM_016633" /product="DEA(D/H)-box RNA helicase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011527001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029008t1" /inference="similar to AA sequence:Phytozome:Glyma09g34390.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc215t5; alternateUTRof:Thecc1EG016633t2; inference alignment:Newbler:10:TSA:cgbaB_g05344t00001" CDS complement(join(33746828..33746830,33747002..33747166, 33747364..33747457,33747921..33747989,33748493..33748560, 33748650..33748706,33748780..33748865,33749084..33749162, 33749421..33749501,33749958..33750065,33750186..33750304, 33750406..33750943)) /locus_tag="TCM_016633" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG029008t1" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 2" /protein_id="EOY25263.1" /db_xref="Phytozome:Glyma09g34390.1" /db_xref="TAIR:AT1G31970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YS30" /translation="MTASTEPLAPESMSDQTIKKKNKKKNKLAKLEDQREENVKQKPQ ETEEIELRKKDKKKRKKGKESESQASHEESADEPKRKKKKEKKEQKQEEENGEFSETQ KIKQDSVQFDGEEKVVVSGKDAEEAKYAPMKSFADSKLPKNVLNCCKDFKSPSPIQAH AWPFLLNGRDFIGIAKTGSGKTLAFGVPAMMHVLDKRKRVKNKNPLCLVLSPTRELAE QIFNVMCNAGQSCDVKSVCLYGGTSKGPQISSLNSGVDIVIGTPGRLKDLMNMEVCQL KDVSFVVLDEADRMLDMGFEDDVRFILGRTCSARQMVMFSATWPAAVHRLAQEYMDPN PVKVVIGSEDLAANHDVMQIVEVLDDRSRYERLTALLKKYHESKRNRVLVFVLYKAEA GRIENMLQRSGWNVVSIHGGKAQHERTNALSLFKDGSSPLMVATDVAARGLDIPDVEV VINYSFPLTTEDYVHRIGRTGRAGRKGVAHTFFTQQNK" CDS complement(join(33746831..33746833,33747002..33747166, 33747364..33747457,33747921..33747989,33748493..33748560, 33748650..33748706,33748780..33748865,33749084..33749162, 33749421..33749501,33749958..33750065,33750186..33750304, 33750406..33750943)) /locus_tag="TCM_016633" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029008t1" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 2" /protein_id="EOY25260.1" /db_xref="Phytozome:Glyma09g34390.1" /db_xref="TAIR:AT1G31970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YS30" /translation="MTASTEPLAPESMSDQTIKKKNKKKNKLAKLEDQREENVKQKPQ ETEEIELRKKDKKKRKKGKESESQASHEESADEPKRKKKKEKKEQKQEEENGEFSETQ KIKQDSVQFDGEEKVVVSGKDAEEAKYAPMKSFADSKLPKNVLNCCKDFKSPSPIQAH AWPFLLNGRDFIGIAKTGSGKTLAFGVPAMMHVLDKRKRVKNKNPLCLVLSPTRELAE QIFNVMCNAGQSCDVKSVCLYGGTSKGPQISSLNSGVDIVIGTPGRLKDLMNMEVCQL KDVSFVVLDEADRMLDMGFEDDVRFILGRTCSARQMVMFSATWPAAVHRLAQEYMDPN PVKVVIGSEDLAANHDVMQIVEVLDDRSRYERLTALLKKYHESKRNRVLVFVLYKAEA GRIENMLQRSGWNVVSIHGGKAQHERTNALSLFKDGSSPLMVATDVAARGLDIPDVEV VINYSFPLTTEDYVHRIGRTGRAGRKGVAHTFFTQQNK" CDS complement(join(33747120..33747166,33747354..33747457, 33747921..33747989,33748493..33748560,33748650..33748706, 33748780..33748865,33749084..33749162,33749421..33749501, 33749958..33750065,33750186..33750304,33750406..33750943)) /locus_tag="TCM_016633" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 3" /protein_id="EOY25261.1" /db_xref="Phytozome:Glyma09g34390.1" /db_xref="TAIR:AT1G31970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YS30" /translation="MTASTEPLAPESMSDQTIKKKNKKKNKLAKLEDQREENVKQKPQ ETEEIELRKKDKKKRKKGKESESQASHEESADEPKRKKKKEKKEQKQEEENGEFSETQ KIKQDSVQFDGEEKVVVSGKDAEEAKYAPMKSFADSKLPKNVLNCCKDFKSPSPIQAH AWPFLLNGRDFIGIAKTGSGKTLAFGVPAMMHVLDKRKRVKNKNPLCLVLSPTRELAE QIFNVMCNAGQSCDVKSVCLYGGTSKGPQISSLNSGVDIVIGTPGRLKDLMNMEVCQL KDVSFVVLDEADRMLDMGFEDDVRFILGRTCSARQMVMFSATWPAAVHRLAQEYMDPN PVKVVIGSEDLAANHDVMQIVEVLDDRSRYERLTALLKKYHESKRNRVLVFVLYKAEA GRIENMLQRSGWNVVSIHGGKAQHERTNALSLFKDGSSPLMVYSCSHRCGCSRIGYSR C" CDS complement(join(33747328..33747457,33747921..33747989, 33748493..33748560,33748650..33748706,33748780..33748865, 33749084..33749162,33749421..33749501,33749958..33750065, 33750186..33750304,33750406..33750943)) /locus_tag="TCM_016633" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 6" /protein_id="EOY25264.1" /db_xref="Phytozome:Glyma09g34390.1" /db_xref="TAIR:AT1G31970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YS30" /translation="MTASTEPLAPESMSDQTIKKKNKKKNKLAKLEDQREENVKQKPQ ETEEIELRKKDKKKRKKGKESESQASHEESADEPKRKKKKEKKEQKQEEENGEFSETQ KIKQDSVQFDGEEKVVVSGKDAEEAKYAPMKSFADSKLPKNVLNCCKDFKSPSPIQAH AWPFLLNGRDFIGIAKTGSGKTLAFGVPAMMHVLDKRKRVKNKNPLCLVLSPTRELAE QIFNVMCNAGQSCDVKSVCLYGGTSKGPQISSLNSGVDIVIGTPGRLKDLMNMEVCQL KDVSFVVLDEADRMLDMGFEDDVRFILGRTCSARQMVMFSATWPAAVHRLAQEYMDPN PVKVVIGSEDLAANHDVMQIVEVLDDRSRYERLTALLKKYHESKRNRVLVFVLYKAEA GRIENMLQRSGWNVVSIHGGKAQHERTNALSLFKDGSSPLMVYSCILSFFSF" gene 33751945..33752523 /locus_tag="TCM_016634" /note="dbxref CacaoGD:Thecc1EG016634" mRNA 33751945..33752523 /locus_tag="TCM_016634" /product="Cystatin/monellin superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:27574.m000225.2" /inference="similar to AA sequence:Phytozome:POPTR_0006s01560.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11698t1" CDS 33752024..33752380 /locus_tag="TCM_016634" /codon_start=1 /product="Cystatin/monellin superfamily protein, putative" /protein_id="EOY25266.1" /db_xref="Phytozome:POPTR_0006s01560.1" /translation="MQQKLLVVVFSVSLVFLPFVFSDARRENLAGGWEPIKDLNDPHV KEVAEFAVSEYNKQSKSSLELKSVMKGEMQVVSGINYKLDVETTAAEAKEYEAVVWEK AGLNSKSLTSFKPIQG" gene 33753427..33759687 /locus_tag="TCM_016635" /note="dbxref CacaoGD:Thecc1EG016635" mRNA join(33753427..33753467,33754577..33755508, 33756350..33756808,33757361..33758305,33758411..33759687) /locus_tag="TCM_016635" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027551001.2" /inference="similar to AA sequence:Phytozome:GSVIVT01027558001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc454t5_C1" CDS join(33753449..33753467,33754577..33755508, 33756350..33756808,33757361..33758305,33758411..33759016) /locus_tag="TCM_016635" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY25267.1" /db_xref="Phytozome:GSVIVT01027558001" /db_xref="TAIR:AT2G45550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I333" /translation="MIILYKGNYSQCSKCCISRKLGPRSKTKMDLYTLLLCISLLFIF LRRSSARSLPPGPINLPIIGSLHRLGSHPNQSLFELAKIYGPLMTLRLGFVTTVIASS AETAKQILQTHEQTFSDRTVPDVVASQPNPESTLAWALGDSRWRNRRRLCNTQLFTVQ RLNSLQHLRHQKVEQLIEHINKQGVSVSQVNIGQVAFATALNLISTTIFSKDIADPDF STAQEFKDLVWRIMEDSAKPNLSDYFPMLKRFDLQGLRKHIRPSYMRLHEIFDELIDK RMEARASGSSTRSGDLLDVLLDQCEENASYFSRQNIKPLILDLFIAGSDTSAITTEWA MAELLRKPEALQKTRRELIEVIGSERAVTESDVDQLPYLQAVVKETMRLHPAAPLLLP YKAKNDVKICGYTVPKNAQVLVNAWAIGRDPKFWSDPFLFCPERFLDSGLDYRGRDFE FIPFGTGRRICPGLPLAVRMVLSSLLSVYTLRQHPQQSNQKMELYIILLCISIVFLLF KPLFHRSKTLNLPPGPTGLPIIGSIHRLGAHPNQSLSELAEIHGPIMSLRLGSVTVVV LSSPDMAKKILQTHAQSFSDRPIPDAIASMPNLEASLVWGPSDDNRWRKLRGMCSTQL FSAQKLNSLQHLRYQKVEQLIEHIRKHCLSGSQVNIGQVVFATTLNLIFSTMFSMDIV DPEFSTAEEFKELVWKIVESAGKPNLSDYFPVLKRFDLQGLRKNARLPYDRMHEIFDE MIGKRMEARASDPATRNGDFLDVLLDQWEENGSVINRETIKPLIQNLFIAGSETSATT TEWAMAELLRNPEVMQKAREELMNVIGSERTVKESDMDELPYLQAVVKETLRLHPAAP LLLPYKARNDVEICGYTIPKGTHALVNIWAINRDPKYWDHPLTFCPDRFIGSKIDYKD GSYEFIPFGAGRRLCLGLPLATRMVHLMLASMILSFDWKLPQGINPQELDMQEKFGMT LKKAVPLYAIPVMR" mobile_element complement(33753455..33753581) /note="source:INTACT639F_F363_scaffold_5-int 8457 8586" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33753584..33753667) /note="source:scaffold_3_CACTA_0396 892 976" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33753653..33754566) /note="source:INTACT639F_F363_scaffold_5-int 7510 8469" /mobile_element_type="retrotransposon:LTR/Copia" gene 33761062..33765497 /locus_tag="TCM_016636" /note="dbxref CacaoGD:Thecc1EG016636" mRNA join(33761062..33761242,33762024..33762125, 33762208..33762270,33762473..33762506,33762604..33762726, 33763294..33763356,33763456..33763549,33763656..33763678, 33763782..33763849,33764184..33764232,33764521..33764586, 33764912..33765436) /locus_tag="TCM_016636" /product="Secretory carrier-associated membrane protein 4 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30068.m002668" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007982t2" /inference="similar to AA sequence:Phytozome:Glyma09g34400.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b016074t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10368t1" mRNA join(33761067..33761242,33762024..33762125, 33762208..33762270,33762473..33762506,33762604..33762726, 33763294..33763356,33763456..33763549,33763656..33763701, 33763782..33763849,33764184..33764232,33764521..33764586, 33764912..33765383) /locus_tag="TCM_016636" /product="SCAMP family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002668" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029955t2" /inference="similar to AA sequence:Phytozome:Glyma09g34400.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10368t1" mRNA join(33761120..33761242,33762024..33762125, 33762208..33762270,33762473..33762506,33762604..33762726, 33763294..33763356,33763456..33763541,33763624..33763701, 33763782..33763849,33764184..33764232,33764521..33764586, 33764912..33765497) /locus_tag="TCM_016636" /product="SCAMP family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002668" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029955t2" /inference="similar to AA sequence:Phytozome:Glyma09g34400.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1235t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10368t1" mRNA join(33761120..33761242,33762024..33762125, 33762208..33762270,33762473..33762506,33762604..33762726, 33763294..33763356,33763456..33763541,33763624..33763701, 33763782..33763849,33764184..33764232,33764521..33764966) /locus_tag="TCM_016636" /product="SCAMP family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30068.m002668" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029955t2" /inference="similar to AA sequence:Phytozome:Glyma09g34400.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1235t9; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10368t1" CDS join(33761186..33761242,33762024..33762125, 33762208..33762270,33762473..33762506,33762604..33762726, 33763294..33763356,33763456..33763549,33763656..33763701, 33763782..33763849,33764184..33764232,33764521..33764586, 33764912..33764944) /locus_tag="TCM_016636" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029955t2" /codon_start=1 /product="SCAMP family protein isoform 1" /protein_id="EOY25268.1" /db_xref="Phytozome:Glyma09g34400.1" /db_xref="TAIR:AT1G32050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C6X2" /translation="MNRHHDPNPFDEEEVNPFSNGGAVAPARPLASEPLGFGQKHDAT VDIPLDTMNEPKKKEKELAAWEADLKRREKDIKRREDAISQAGVTVDNKNWPPIFPII HHDIANEIPVHAQRLQYLAFASWLGIVLCLVYNVIAVIVCWIQGGGVKIFFLAIIYML LGCPLSYVLWYRPLYRAMRTDSALNFGWFFMFYLLHLGFCIFAAIAPPVVFHGKSLTG VLAAFDVISNHLVAGIFYFVGFGLFCLESLLSLWVLQKIYLYFRGHK" CDS join(33761186..33761242,33762024..33762125, 33762208..33762270,33762473..33762506,33762604..33762726, 33763294..33763356,33763456..33763541,33763624..33763701, 33763782..33763849,33764184..33764232,33764521..33764586, 33764912..33764944) /locus_tag="TCM_016636" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029955t2" /codon_start=1 /product="SCAMP family protein isoform 2" /protein_id="EOY25269.1" /db_xref="Phytozome:Glyma09g34400.1" /db_xref="TAIR:AT1G32050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C6X2" /translation="MNRHHDPNPFDEEEVNPFSNGGAVAPARPLASEPLGFGQKHDAT VDIPLDTMNEPKKKEKELAAWEADLKRREKDIKRREDAISQAGVTVDNKNWPPIFPII HHDIANEIPVHAQRLQYLAFASWLGIVLCLVYNVIAVIVCWIQGGGVKIFFLAIIYML LGCPLSYVLWYRPLYRCSAVYFVSPCRTDSALNFGWFFMFYLLHLGFCIFAAIAPPVV FHGKSLTGVLAAFDVISNHLVAGIFYFVGFGLFCLESLLSLWVLQKIYLYFRGHK" CDS join(33761186..33761242,33762024..33762125, 33762208..33762270,33762473..33762506,33762604..33762726, 33763294..33763356,33763456..33763541,33763624..33763701, 33763782..33763849,33764184..33764232,33764521..33764619) /locus_tag="TCM_016636" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG029955t2" /codon_start=1 /product="SCAMP family protein isoform 4" /protein_id="EOY25271.1" /db_xref="Phytozome:Glyma09g34400.1" /db_xref="TAIR:AT1G32050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C6X2" /translation="MNRHHDPNPFDEEEVNPFSNGGAVAPARPLASEPLGFGQKHDAT VDIPLDTMNEPKKKEKELAAWEADLKRREKDIKRREDAISQAGVTVDNKNWPPIFPII HHDIANEIPVHAQRLQYLAFASWLGIVLCLVYNVIAVIVCWIQGGGVKIFFLAIIYML LGCPLSYVLWYRPLYRCSAVYFVSPCRTDSALNFGWFFMFYLLHLGFCIFAAIAPPVV FHGKSLTGVLAAFDVISNHLVAGIFYFVGFGLFCLESLLSLWVLQVRDDSISLDS" CDS join(33761186..33761242,33762024..33762125, 33762208..33762270,33762473..33762506,33762604..33762726, 33763294..33763356,33763456..33763549,33763656..33763678, 33763782..33763849,33764184..33764204) /locus_tag="TCM_016636" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG007982t2" /codon_start=1 /product="Secretory carrier-associated membrane protein 4 isoform 3" /protein_id="EOY25270.1" /db_xref="Phytozome:Glyma09g34400.2" /db_xref="TAIR:AT1G32050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C6X2" /translation="MNRHHDPNPFDEEEVNPFSNGGAVAPARPLASEPLGFGQKHDAT VDIPLDTMNEPKKKEKELAAWEADLKRREKDIKRREDAISQAGVTVDNKNWPPIFPII HHDIANEIPVHAQRLQYLAFASWLGIVLCLVYNVIAVIVCWIQGGGVKIFFLAIIYML LGCPLSYVLWYRPLYRAMRTDSALNFAPPWVLHICCNSSSCCLSWEVIDRCPGSL" gene 33766475..33769991 /locus_tag="TCM_016637" /note="dbxref CacaoGD:Thecc1EG016637" mRNA join(33766475..33767442,33768099..33768183, 33768268..33768352,33769066..33769310,33769423..33769991) /locus_tag="TCM_016637" /product="Phosphoribulokinase" /inference="alignment:exonerate- protein:2:ricco:30068.m002669" /inference="similar to AA sequence:Phytozome:POPTR_0003s09830.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11716t1" CDS join(33766874..33767442,33768099..33768183, 33768268..33768352,33769066..33769310,33769423..33769674) /locus_tag="TCM_016637" /codon_start=1 /product="Phosphoribulokinase" /protein_id="EOY25272.1" /db_xref="Phytozome:POPTR_0003s09830.1" /db_xref="TAIR:AT1G32060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P25697" /translation="MAVCTVYTTQSLNSTCSISTPTKTHLGFHQKQVVFYSTGKRTSK RGSSSSGGPCVITCSAVDSQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPD SNTLISDMTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKALKSGVAVDK PIYNHVTGLLDPPELIKPPKILVIEGLHPMFDERVRDLLDFSIYLDISNEVKFAWKIQ RDMAERGHSLESIKASIEARKPDFDAFIDPQKQYADAVIEVLPTQLIPGDNEGKVLRV RLIMKEGVKHFSPVYLFDEGSTLSWIPCGRKLTCSYPGIKFHYGPDTYFGNEVSILEM DGQFDRLDELIYVESHLSNISTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRD LYEQITTSKTATPLEATKA" gene complement(33770486..33772792) /locus_tag="TCM_016638" /note="dbxref CacaoGD:Thecc1EG016638" mRNA complement(join(33770486..33771444,33772322..33772792)) /locus_tag="TCM_016638" /product="Basic pentacysteine 7, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G35550.1" /inference="similar to AA sequence:ricco:30068.m002670" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10362t1" CDS complement(33770705..33771415) /locus_tag="TCM_016638" /note="dbxref ricco:30068.m002670" /codon_start=1 /product="Basic pentacysteine 7, putative" /protein_id="EOY25273.1" /db_xref="TAIR:AT2G35550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUA5" /translation="MKMGSYSNKNMMPETNTGSSVSPFSLFYTGNYIPTSRPGLSSLQ GTQIHHEPGLVVAPIRSIAPTTESGKNNDLGSKSTRVGKQNPSVKGSNQIASKVLRPK QPKKKPSVPKKAKGTVIPEAKREKKNLNIDLDGTNFDFSGVPSPICSCTGVARVCYKW GAGGWQSSCCTINISEYPLPMSSTRPGARMAGRKMSNGAYLKLLLRLAAEGHDLSHPV DLKEHWARHGTNKFVTIK" gene complement(33772783..33776500) /locus_tag="TCM_016639" /note="dbxref CacaoGD:Thecc1EG016639" mRNA complement(join(33772783..33773279,33773385..33773514, 33773712..33773889,33774091..33774200,33774372..33774487, 33774609..33774870,33775571..33775886,33775996..33776500)) /locus_tag="TCM_016639" /product="Inner membrane protein yohK isoform 1" /inference="alignment:exonerate- protein:2:ricco:30068.m002671" /inference="similar to AA sequence:ricco:30068.m002671" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11720t2" mRNA complement(join(33772821..33773279,33773385..33773514, 33773712..33773851,33775594..33775886,33775996..33776467)) /locus_tag="TCM_016639" /product="Inner membrane protein yohK isoform 2" /inference="alignment:exonerate- protein:2:ricco:30068.m002671" /inference="similar to AA sequence:ricco:30068.m002671" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1064t6_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11720t2" CDS complement(join(33773129..33773279,33773385..33773514, 33773712..33773851,33775594..33775886,33775996..33776340)) /locus_tag="TCM_016639" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30068.m002671" /codon_start=1 /product="Inner membrane protein yohK isoform 2" /protein_id="EOY25275.1" /db_xref="TAIR:AT1G32080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FVQ4" /translation="MAAPLVATPTNLSLSPTHHHHSKSPSLTCLTFKPNLHRIRRNLT HVAFNGNPQAYKHEHNHSGPPHKSLVSVRVLGPNSSFLQMDPQETSSSRTVSVKSSAS DDSNISTSTISQKVFGVLHLVVSLGIVLAMDKFLKKAFVAAAIKFPSALFGMFCIFSV LVMLDTAIPAAATSLMNFFEPALMFIQRWLPLFYVPALVVLPLSVRDIPASSGIISSL FSLYSTALVGRLVGLEPSLTVSILPRCITVALALTIVSFFEGANSSLTAAAVVVTGLI GANFVQAMLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYGLTGIFG SLFCSVPAIRQSLLAVIG" CDS complement(join(33773129..33773279,33773385..33773514, 33773712..33773889,33774091..33774200,33774372..33774487, 33774609..33774870,33775571..33775886,33775996..33776340)) /locus_tag="TCM_016639" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30068.m002671" /codon_start=1 /product="Inner membrane protein yohK isoform 1" /protein_id="EOY25274.1" /db_xref="TAIR:AT1G32080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FVQ4" /translation="MAAPLVATPTNLSLSPTHHHHSKSPSLTCLTFKPNLHRIRRNLT HVAFNGNPQAYKHEHNHSGPPHKSLVSVRVLGPNSSFLQMDPQETSSSRTVSVKSSAS DDSNISTSTISQKVFGVLHLVVSLGIVLAMDKFLKKAFVAAAIKFPSALFGMFCIFSV LVMLDTAIPAAATSLMNFFEPALMFIQRWLPLFYVPALVVLPLSVRDIPASSGLKICF IIAGGWLASLCVAGFTAIAVRKIVKTEMTDAEPMAKPSPFSPLEFWTWSGIFLVSFVS AIFYPTALGTSARTCLPFLLASTVLGYMVGSGLPSGVKKVFHPIICCALSADLAALAF GYISPLGVDAVLGCYLTKVSSNPGAGDILMGFLGSVILSFAFSMFKQRKLIKRHAAEI FISIIISSLFSLYSTALVGRLVGLEPSLTVSILPRCITVALALTIVSFFEGANSSLTA AAVVVTGLIGANFVQAMLDKLRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAI AYGLTGIFGSLFCSVPAIRQSLLAVIG" gene complement(33776726..33780341) /locus_tag="TCM_016640" /note="dbxref CacaoGD:Thecc1EG016640" mRNA complement(join(33776726..33777201,33777297..33777399, 33777799..33777866,33777971..33778116,33778671..33778860, 33779129..33780341)) /locus_tag="TCM_016640" /product="Acyl:coa ligase" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400016385" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034347t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09880.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2153t1" CDS complement(join(33777088..33777201,33777297..33777399, 33777799..33777866,33777971..33778116,33778671..33778860, 33779129..33780193)) /locus_tag="TCM_016640" /note="paralog of Thecc1EG034347t1" /codon_start=1 /product="Acyl:coa ligase" /protein_id="EOY25276.1" /db_xref="Phytozome:POPTR_0003s09880.2" /db_xref="TAIR:AT4G19010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZT8" /translation="MATSLNSHFSFQRSESKTTRFPDWYSPETGIYSSKHSSISLPTD HFLDIVSFIFSHQHDGVTALIDSSSGYSTSYAKLLPLIQSMASGLHHLGVSQGDVVLL LLPNSVHFPIIFLSVLYLGAIVTTMNPLTSMLEIKKQIADSSVRFAFTLLDKVDKLKN LGVHAIGVPENLNLDSEKTDFLLFHKLIGGQFDKAPRPVIRQQDTAAIMYSSGTTGVS KGVVLTHGNFIAMVELFVRFEASQYEYSSSKNVYLAVLPMFHIYGLSLFVVGLLSLGT SIVVMRRFNATEMVRVIDKYGVTHFPVVPPILRTLAMRAKGVCENSLKSLKQVSCGAA PLSRKAIEDFVQALPHVDFIQGYGMTESTAVGNRGFNNEKHHKYSSVGLLAPNMQAKV VDWNSGSSLPPDSHGELWLRGPGLMQGYLNNVEATRMTIDKDGWLRTGDIVCFDEDGY MYVSDRLKEIIKYKGYQIAPADLEAILISHPEILDAAVIPAIDEEAGEIPVAFVVRRQ GSTLTQGAVMDFVAKQVAPYKKVRKVVFTKSIPKSAAGKTLRRELRNFLSSRL" gene complement(33781938..33790872) /locus_tag="TCM_016641" /note="dbxref CacaoGD:Thecc1EG016641" mRNA complement(join(33781938..33782952,33783129..33783210, 33783347..33783562,33783839..33784072,33784361..33784685, 33785625..33785870,33786444..33786784,33786933..33787013, 33787154..33787273,33787417..33787518,33787750..33787885, 33787964..33788116,33789323..33789680,33790720..33790872)) /locus_tag="TCM_016641" /product="Early-responsive to dehydration stress protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09900.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002125t1" /inference="similar to AA sequence:ricco:29827.m002682" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1193t9" mRNA complement(join(33782530..33782952,33783129..33783562, 33783839..33784072,33784361..33784685,33785625..33785870, 33786444..33786784,33786933..33787013,33787154..33787273, 33787417..33787518,33787750..33787885,33787964..33788116, 33789323..33789773)) /locus_tag="TCM_016641" /product="Early-responsive to dehydration stress protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09900.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002125t1" /inference="similar to AA sequence:ricco:29827.m002682" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1197t3; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1193t9" CDS complement(join(33782927..33782952,33783129..33783210, 33783347..33783562,33783839..33784072,33784361..33784685, 33785625..33785870,33786444..33786784,33786933..33787013, 33787154..33787273,33787417..33787518,33787750..33787885, 33787964..33788116,33789323..33789636)) /locus_tag="TCM_016641" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29827.m002682; paralog of Thecc1EG002125t1" /codon_start=1 /product="Early-responsive to dehydration stress protein isoform 1" /protein_id="EOY25277.1" /db_xref="TAIR:AT1G32090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FVQ5" /translation="MATLGDIGVSALINILTAFAFLLAFALLRIQPINDRVYFPKWYI NGGRTSPRRGGNFVAKFVNLNCMTYLTFLNWMPQALKMSETEIINHAGLDSAVFLRIY TLGVKIFVPITVVALLILIPVNVSSGTLFFLRKELVVSDIDKLSISNVRTESIRFFVH IGLEYLFTIWICYMLYKEYDNVARMRLHFLASQRRRAEQFTVVVRNMPQMSGHSISDS VDHFFKTNHPDHYLCHQAVYNANKFAKLVRKRDRLQNWLDYNQLKFERHPEKRPTKKA GFLGLWGERVDSIDFYKHQVKEFDKKMALERQKVLKDPKSILPVAFVSFKSRWGAAVC AQTQQSKNPTLWLTNWAPEPRDVYWRNLAIPFVSLTIRKLIISLSVFALVFFYMIPIA FVQSLANLEGLERVAPFLRPVIELKFIKSFLQGFLPGLALKIFLYILPTILMIMSKIE GHIALSTLERRASAKYYYFMLVNVFLGSIVTGTAFEQLHSFLHQSPTQIPRTIGVSIP MKATFFITYIMVDGWAGIASEILRLKPLVIFHLKNMFLVKTERDREKAMDPGSVDYPE TLPSLQLYFLLGIVYAVVTPILLPFILVFFAFAYLVYRHQIINVYNPQYESGAAFWPH VHSRIIASLLISQLLLMGLLSTKKAANSTPLLVILPILTLAFHKYCKNRFEPAFRKYP LEEAMAKDIMDRTTEPDLNLKAFLADAYLHPIFRTFEEEELVEVRVDKVRVDRQQSYA DNAPTSDLSSPSPPHEQSHDLQGTNMLRRSPNQTLSDSFNLPPEFNGLLSL" CDS complement(join(33783200..33783562,33783839..33784072, 33784361..33784685,33785625..33785870,33786444..33786784, 33786933..33787013,33787154..33787273,33787417..33787518, 33787750..33787885,33787964..33788116,33789323..33789636)) /locus_tag="TCM_016641" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29827.m002682; paralog of Thecc1EG002125t1" /codon_start=1 /product="Early-responsive to dehydration stress protein isoform 2" /protein_id="EOY25278.1" /db_xref="TAIR:AT1G32090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FVQ5" /translation="MATLGDIGVSALINILTAFAFLLAFALLRIQPINDRVYFPKWYI NGGRTSPRRGGNFVAKFVNLNCMTYLTFLNWMPQALKMSETEIINHAGLDSAVFLRIY TLGVKIFVPITVVALLILIPVNVSSGTLFFLRKELVVSDIDKLSISNVRTESIRFFVH IGLEYLFTIWICYMLYKEYDNVARMRLHFLASQRRRAEQFTVVVRNMPQMSGHSISDS VDHFFKTNHPDHYLCHQAVYNANKFAKLVRKRDRLQNWLDYNQLKFERHPEKRPTKKA GFLGLWGERVDSIDFYKHQVKEFDKKMALERQKVLKDPKSILPVAFVSFKSRWGAAVC AQTQQSKNPTLWLTNWAPEPRDVYWRNLAIPFVSLTIRKLIISLSVFALVFFYMIPIA FVQSLANLEGLERVAPFLRPVIELKFIKSFLQGFLPGLALKIFLYILPTILMIMSKIE GHIALSTLERRASAKYYYFMLVNVFLGSIVTGTAFEQLHSFLHQSPTQIPRTIGVSIP MKATFFITYIMVDGWAGIASEILRLKPLVIFHLKNMFLVKTERDREKAMDPGSVDYPE TLPSLQLYFLLGIVYAVVTPILLPFILVFFAFAYLVYRHQIINVYNPQYESGAAFWPH VHSRIIASLLISQLLLMGLLSTKKAANSTPLLVILPILTLAFHKYCKNRFEPAFRKYP LEEAMAKDIMDRTTEPDLNLKAFLADAYLHPIFRTFEEEELVEVRVDKVRVDRQQSYA DNAPTSDLSSPSPPHEVYHSTSPPHHSYQPTSPPQDVYYHGSTPQYAYNFSSPPHYGY HYEAEP" mobile_element 33788668..33788787 /note="source:scaffold_9_CACTA_0944 1 117" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33788783..33788854 /note="source:scaffold_9_CACTA_0944 262 335" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33789803..33789868 /note="source:scaffold_6_CACTA_0712 1381 1447" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33789816..33789885 /note="source:CACAO_M_E44848_F172_scaffold_6 1908 1973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33789818..33789898) /note="source:CACAO_M_E43428_F369_scaffold_5 1239 1316" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33792924..33795602 /locus_tag="TCM_016643" /note="dbxref CacaoGD:Thecc1EG016643" mRNA join(33792924..33793814,33794095..33795602) /locus_tag="TCM_016643" /product="5'-AMP-activated protein kinase subunit gamma-3, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01600.1" /inference="similar to AA sequence:ricco:29827.m002681" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11744t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11744t1" CDS join(33793459..33793814,33794095..33795406) /locus_tag="TCM_016643" /note="dbxref ricco:29827.m002681" /codon_start=1 /product="5'-AMP-activated protein kinase subunit gamma-3, putative" /protein_id="EOY25279.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUA7" /translation="MADHQESSEVQSNQELQGPATSNGQEINRSTSDDHDISLTMERA REAYRTYSRLEPKPERREIWAWYAYELCSYFVHTALIPIVFSLIIGQIVDLPSEPPQG WSKSDKGLTCKISEMQLYERLTRRSISIGDSKVSPLEWTSISWAIGLILAGPALRFIS IKLDYGRNQQVIAGAATAIGSFFCLPVGFFRVTWIFPLYIAPIVVAITIATASHTRHH GLMIRGFTGAILQRHQFPVRRGVSSWHSLYAAAAGCLGSAVIAAFVYYMLRIRDTFTG LWVVSIFSGLKWLAGIVHVVTLRHGATVSSTLPKDHFLTIFKYHHGLGSLIVVGLSSF TSMCIFTGGLLYLVGELCLKPVFLLYFWLIYFIFPSVSLPLLQPLQLVLKANAVKMHL LGLILSLITSGTGFQFRKDSWQKHHILIFAALQSTSTGVLHAFGRVLLMDCSPAGKEG AFAIWYSWVKMVGTCLGFAVASGAAAGNVGTSFGIAFCTAAVAILISIYGNISDVAGA VAAGLTAEEGETVSAPQTPSGLGDGNININGYDSATKEPVAAGEEAA" gene 33796064..33809908 /locus_tag="TCM_016644" /note="dbxref CacaoGD:Thecc1EG016644" mRNA join(33796064..33796829,33796910..33797013, 33797106..33797190,33798587..33798646,33798923..33798940, 33799029..33799061,33799545..33799635,33799709..33799738, 33799863..33800329,33800866..33800900,33801049..33801898, 33802602..33802636,33802782..33802884,33803138..33803242, 33803329..33803448,33803630..33803723,33804386..33804585, 33804687..33804752,33804835..33805068,33805253..33805311, 33805383..33805449,33805560..33805889,33806057..33806125, 33806215..33806304,33806390..33806477,33807863..33807981, 33808061..33808165,33808539..33808582,33808690..33808759, 33808842..33808945,33809162..33809302,33809401..33809908) /locus_tag="TCM_016644" /product="DNA-methyltransferase CMT2" /inference="alignment:exonerate-protein:2:frave:gene13664" /inference="similar to AA sequence:ricco:29827.m002677" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc961t15" CDS join(33796617..33796829,33796910..33797013, 33797106..33797190,33798587..33798646,33798923..33798940, 33799029..33799061,33799545..33799635,33799709..33799738, 33799863..33800329,33800866..33800900,33801049..33801898, 33802602..33802636,33802782..33802884,33803138..33803242, 33803329..33803448,33803630..33803723,33804386..33804585, 33804687..33804752,33804835..33805068,33805253..33805311, 33805383..33805449,33805560..33805889,33806057..33806125, 33806215..33806304,33806390..33806477,33807863..33807981, 33808061..33808165,33808539..33808582,33808690..33808759, 33808842..33808945,33809162..33809302,33809401..33809455) /locus_tag="TCM_016644" /note="dbxref ricco:29827.m002677" /codon_start=1 /product="DNA-methyltransferase CMT2" /protein_id="EOY25280.1" /db_xref="TAIR:AT4G19020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F87" /translation="MQRLCSKLRSLALRSTQTLPSLSASRRFLHHSSPPIPLISTKWS FNSLLNNNAASPSLAVNSFRYSPLPLSVVQVRHVSSRERAKRRKPMTPRTSKIKKIKM KSYSSYKSRFRVMSDGSIRRWREGKNHNAHLKSKKSRRRLRQPAIVPAAYAKLVVEGI ASWCNTPRMLQVLVLLELLSQPILKIGIPAQRDQTTEALNLVKARLHASRCVMKPCRK SKHESGSWSLSLVKSEDEKEERPVPLAIHLPEGMAADNKLRPRRFPSLFPVPPAHDVR SSCKFYEETVRRSCLRRSSRLSAFVGQESATVGPIGSVETESDDKIENKDSNCRINKV RTFVDDKSLRRSPRFPSTSAEAQSGRTLSLSIKRKSSESQSFELNESTEAKIMNVESM KVQGLRRSPRLTSASPETNGSSSEPMFKSSEKVSYSKTRSSGKVIDKLLWPKDVDKGS VPSKHNGPNFSGEKQRRKSPGLVAETDNCGGNESLRKFEVHNSSFSIGKRLRRSPRIS QATKNSCSNVSIKRLDTDEVGFSGLGMSPSSMQAIENGDGDVHFTEHRREMRSEKQLK IPFSHSTSLAEVCCAEVNSSSIRLSNSCNEHPSKKFKVSAADSDMGKPDEKFSKKIND SSLSKNNKRKHVSDPIFIGNPIPDDEAQERWRWRYEMKHIKSKRKSVSLDDDDEDKIV WNVECHYAQAEIDGCAINLGDCVYIKGEEAKEHIGRILEFFKTTDGENYFRVQWFYRA EDTVLKQETAFHDKRRLFYSTVMNDNPIDCIVSKVSVTQRSPKLGLKLNSIPQSDYYF DMEYCVEYSTFRTLPSDDSFKSYNSSNCCKGIFPTTPTAFSANIPSCGTHKAELALLD LYSGCGGMSMGLCLGAKASCIDLVTKWAVDSDKSACKSLKLNHPETHVRNEAADDFLQ LLKEWEKLCKRYAVENAGRRYSSRSTTSQAAGNDANSPNDGELEVSSLVDICYGDPCK TGKHSLYFKVQWRGYSASEDTWEPIEGLSNCQECIQQFVRKGFKSKILPLRGNVDVIC GGPPCQGISGYNRYRNVDSPLDDERNRQIVVFMDIVEYLKPKFVLMENVVDILRFDKA SLGRYALSRLVHMKYQARLGIIAAGCYGLPQFRLRVFVWGAQPSEKLPQFPLPTHDVI VRYWPPPEFERNTVAYDEDQPREELEEALVLHDAISDLPAVANNEAHEEMTYRKPPET EFQRYIRSSKHEITGSALNGATRISNPLYDHRPFPLFEDDYARVCLIPKRKGANFRDL PGVIVGNDNVARRDSTQEKKLLPSGKPLVPDYVFTFEQGKSRRPFARLWWDETVPTVV TFPQCHSQAALHPEQDRILTIREYARLQGFPDYYRFCGTIKERYCQVGNAVAVPVARA LGYAMGMAFQKQSGNEPLMTLPPKFSLRTNTQPCLYPGGEQLATGKLAI" gene 33810116..33814034 /locus_tag="TCM_016646" /note="dbxref CacaoGD:Thecc1EG016646" mRNA join(33810116..33810407,33810527..33810592, 33811145..33811328,33811513..33811709,33811868..33811918, 33812133..33812224,33812404..33812465,33812752..33812843, 33813313..33813417,33813506..33814034) /locus_tag="TCM_016646" /product="Plastid transcriptionally active 17" /inference="alignment:exonerate-protein:2:frave:gene13663" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027300t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022647001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06335t00001" CDS join(33810189..33810407,33810527..33810592, 33811145..33811328,33811513..33811709,33811868..33811918, 33812133..33812224,33812404..33812465,33812752..33812843, 33813313..33813417,33813506..33813643) /locus_tag="TCM_016646" /note="paralog of Thecc1EG027300t1" /codon_start=1 /product="Plastid transcriptionally active 17" /protein_id="EOY25281.1" /db_xref="Phytozome:GSVIVT01022647001" /db_xref="TAIR:AT1G80480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2E3Q0" /translation="MAARFLISRSSSKNLTQLLRPCLKHSHFLTTATLHSLAPLPRNS RGFSSEPPAFASDTRVPATVITGFLGSGKTTLLNHILTAQHGKRIAVIENEFGEVDID GSLVASHSSASEEDIVMVNNGCLCCTVRGDLVKMLLELVKKKKDKFDHIVIETTGLAK PGPVIETFCADELVSRYVKLDGVVTLVDSKHAMKHLNEAKPRFVVNEAVEQVAYADRI ILNKIDLVTEGDLETLTDKIKHINSMAQIKRAKFGAVDMDFVLGVGGYDLERIDSEVH ANNSHCGNHEHDVHGQHKEHHHNHLHDSAVSSVSFVSEGTLDLDEVDDWLQRLIEEKG EDLYRMKGVLSVNGFDQRYVFQGVHSTLDGCPGKMWEPDEKRTNKLVFIGRNLDETAL RKGFKGCLV" gene 33814664..33817058 /locus_tag="TCM_016647" /note="dbxref CacaoGD:Thecc1EG016647" mRNA join(33814664..33815301,33815795..33815871, 33815979..33816042,33816152..33816227,33816425..33816494, 33816615..33817058) /locus_tag="TCM_016647" /product="Homeodomain-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g01300.1" /inference="similar to AA sequence:frave:gene13545" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11746t3" CDS join(33815130..33815301,33815795..33815871, 33815979..33816042,33816152..33816227,33816425..33816494, 33816615..33817025) /locus_tag="TCM_016647" /note="dbxref frave:gene13545" /codon_start=1 /product="Homeodomain-like superfamily protein, putative" /protein_id="EOY25282.1" /db_xref="TAIR:AT5G45580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZU3" /translation="MERLSYGGGAGGGAVGGENFGYENGVVMTRDPKPRLRWTADLHD RFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQARKQNAVDQNKD NGGSSYVQFSNHSPGTITNSPSADNDQRQIPVADALNTHLEVRRTLQEQLEVQKKLQM RVEAQGRYLQAILEKAHKSLSFDINCEGNVEETRAELTNFNLALSSLMENVNGGADRK PNVVQMNEVPKKATSCSAFQNYAVGERERNKDVKLKVEGESINFDLNTKDSFEFVAVN GNELQSHMFSYKR" gene complement(33817831..33820053) /locus_tag="TCM_016648" /note="dbxref CacaoGD:Thecc1EG016648" mRNA complement(join(33817831..33818416,33818528..33818731, 33818830..33819070,33819663..33820011)) /locus_tag="TCM_016648" /product="Isoflavone reductase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016649t1" /inference="similar to AA sequence:Phytozome:Glyma09g34470.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05560t00001" mRNA complement(join(33817905..33818416,33818528..33818733, 33819697..33820053)) /locus_tag="TCM_016648" /product="Pinoresinol reductase 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016649t1" /inference="similar to AA sequence:Phytozome:Glyma09g34470.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc968t1_C1; inference alignment:Newbler:10:TSA:cgbaP1_g05560t00001" CDS complement(join(33818253..33818416,33818528..33818733, 33819697..33819992)) /locus_tag="TCM_016648" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016649t1" /codon_start=1 /product="Pinoresinol reductase 1 isoform 2" /protein_id="EOY25284.1" /db_xref="Phytozome:Glyma09g34470.1" /db_xref="TAIR:AT4G13660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P52581" /translation="MAKSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRAEIGLDIDK LQMLLSFKKQGAHLVEGSFNDHKSLVEAVKQADVVICTMSGVHFRSHNISLQLKLVAF MDEDDIATYTINAIDDPRTLNKTLYIRPPGNILTQAHLIQKWEELSGKKLEKISISAQ DFLASMKGLDFAGQVGVGHFYHIFYEGCLTNFEIGEGVEEASRLYPEVEYTRMDDYLK IYI" CDS complement(join(33818253..33818416,33818528..33818731, 33818830..33819070,33819663..33819992)) /locus_tag="TCM_016648" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016649t1" /codon_start=1 /product="Isoflavone reductase isoform 1" /protein_id="EOY25283.1" /db_xref="Phytozome:Glyma09g34470.1" /db_xref="TAIR:AT1G32100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P52581" /translation="MAKSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRAEIGLDIDK LQMLLSFKKQGAHLVEGSFNDHKSLVEAVKQADVVICTMSGVHFRSHNISLQLKLVEA IKEAGNVKRFLPSEFGMDPARMGRALEPGRVTFDEKMVVRKAIEDANIPFTYVVANCF AGYFVGNLSQLERLTPPKDKVYLYGDGNVKVAFMDEDDIATYTINAIDDPRTLNKTLY IRPPGNILTQAHLIQKWEELSGKKLEKISISAQDFLASMKGLDFAGQVGVGHFYHIFY EGCLTNFEIGEGVEEASRLYPEVEYTRMDDYLKIYI" mobile_element complement(33823235..33823388) /note="source:scaffold_1_CACTA_0005 6809 6965" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33823261..33823676 /note="source:CACAO_MITE37_scaffold_2 1 405" /mobile_element_type="transposon:TIR/MITE" mobile_element 33823389..33823423 /note="source:CACAO_on_E681_scaffold_9 24 238" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 33824104..33826376 /locus_tag="TCM_016649" /note="dbxref CacaoGD:Thecc1EG016649" mRNA join(33824104..33824493,33824782..33825022, 33825443..33825646,33825922..33826376) /locus_tag="TCM_016649" /product="Pinoresinol-(+)-lariciresinol reductase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016648t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01540.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09595t00001" CDS join(33824161..33824493,33824782..33825022, 33825443..33825646,33825922..33826085) /locus_tag="TCM_016649" /note="paralog of Thecc1EG016648t1" /codon_start=1 /product="Pinoresinol-(+)-lariciresinol reductase" /protein_id="EOY25285.1" /db_xref="Phytozome:POPTR_0001s01540.1" /db_xref="TAIR:AT1G32100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6Y2X0" /translation="MAMKSKVLVVGGTGYLGKRLVKASLAQGHETYVLHREEIGVDID KVQMLLSFKQQGARLVPASFSDHQSLVNAVKLVDVVICAISGVHIRSHQILLQLKLVD AIKEAGNVKRFLPSEFGTDPARMENAMEPGRLTFDDKMVVRRAIQEAGIPFTYVSANC FAGYFLGGLCQPGYILPSRDHVRLLGDGDQKAIYVDEDDIATYTIKTIDDPRTLNKTV YIRPPKNILSQREVVQIWEKLIGKELLKSSISKEEFLSSMKEQNYAEQVGLTHYYHVC YEGCLANFEIGDGGEEASKLYPEVKYTSAEDYMKRYL" mobile_element complement(33825677..33825857) /note="source:scaffold_9_CACTA_0946 4782 4979" /mobile_element_type="transposon:TIR/CACTA" gene 33826586..33829337 /locus_tag="TCM_016650" /note="dbxref CacaoGD:Thecc1EG016650" mRNA join(33826586..33826715,33826983..33827240, 33827548..33827595,33827688..33827727,33827818..33827918, 33828136..33828325,33828400..33828498,33828764..33828881, 33828966..33829190) /locus_tag="TCM_016650" /product="Domain of Uncharacterized protein function isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09960.1" /inference="similar to AA sequence:Phytozome:GSVIVT01022633001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00157t00003" mRNA join(33826648..33826715,33827079..33827240, 33827548..33827595,33827688..33827727,33827818..33827918, 33828136..33828325,33828400..33828471,33828966..33829337) /locus_tag="TCM_016650" /product="Domain of Uncharacterized protein function isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09960.1" /inference="similar to AA sequence:Phytozome:GSVIVT01022633001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00622t00001; inference alignment:Newbler:10:TSA:cgbaL_g00157t00003" CDS join(33826665..33826715,33827079..33827240, 33827548..33827595,33827688..33827727,33827818..33827918, 33828136..33828325,33828400..33828471,33828966..33829051) /locus_tag="TCM_016650" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Domain of Uncharacterized protein function isoform 2" /protein_id="EOY25287.1" /db_xref="Phytozome:GSVIVT01022633001" /db_xref="TAIR:AT5G48790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F50" /translation="MLLSAPAIAVSSIPRRKVIHSRSHWTEFETTRLIRGSSNLRFII RSVSKEGNTSVESDVPFPSDYIDLLKQAKKATELALKDGKQLMEIEFPTAGLESVPGD GEGGNEMTDSMQLIREFCDILVTPEKARQTRIFFPEANEVKFARQVFEGASFKLDYLT KPSFFEDFGFSEKVKMADRVKPDDELFLVGYPYFNVNEMIVVEELYKEAVVNTTRKLI IFNGAIQVLGEFLERLGTNMSVCTSRKQCHP" CDS join(33827019..33827240,33827548..33827595, 33827688..33827727,33827818..33827918,33828136..33828325, 33828400..33828498,33828764..33828881,33828966..33829086) /locus_tag="TCM_016650" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Domain of Uncharacterized protein function isoform 1" /protein_id="EOY25286.1" /db_xref="Phytozome:GSVIVT01022633001" /db_xref="TAIR:AT5G48790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F50" /translation="MDIWSWSALVCIMINTTKVQVIHSRSHWTEFETTRLIRGSSNLR FIIRSVSKEGNTSVESDVPFPSDYIDLLKQAKKATELALKDGKQLMEIEFPTAGLESV PGDGEGGNEMTDSMQLIREFCDILVTPEKARQTRIFFPEANEVKFARQVFEGASFKLD YLTKPSFFEDFGFSEKVKMADRVKPDDELFLVGYPYFNVNEMIVVEELYKEAVVNTTR KLIIFNGELDRIRSGYYPSFFYPKLAALTKTLLPMMETIYYIHNFKGRNGGTLFRCYP GPWRVLRKVGNKYVCVHQQETMPSLKAVALDILPAA" gene 33829344..33830807 /locus_tag="TCM_016651" /note="dbxref CacaoGD:Thecc1EG016651" mRNA join(33829344..33830229,33830351..33830807) /locus_tag="TCM_016651" /product="Cytokinin-O-glucosyltransferase 1, putative" /inference="similar to AA sequence:frave:gene09273" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage" CDS join(33829373..33830229,33830351..33830726) /locus_tag="TCM_016651" /note="dbxref frave:gene09273" /codon_start=1 /product="Cytokinin-O-glucosyltransferase 1, putative" /protein_id="EOY25288.1" /translation="MAAEILVATGPGQGHLRPCMELCNHLSSPGYKATLIIPSSLSSF IPLSFPHKTASIASPARIIPRCDRIQQPAGQDLEAHLENRSQVPNLPRPQCAIIDFQM GWTKAHFWKFNIPIIGLFTFGACAAAMEWGTWMAKAGDIRPGDTLLIPGLPEGMGLTY SDLKRKPFGSPHGCQPPGGGPPKPGYQPSWIPAIEGSIALMFNTCDDIERPFLNYMAD HIRMPVFGVGPLLPANYWNSPSGSLSSDGHGATVKEHNRQSKASEDEVIQWLDKKPRG SVLFVALAANGRSRFDNMRMGTTNTDTEPRVNGWNSTMEAIGRGIRILAWPIRGDQHY NAKLVVSQLKVGIRVADDSSEMVKKDDIIKGIERLMGDEEMGNRVFALRENLIHGFPA SSEAALDAFKDFISQKAD" gene 33831372..33833434 /locus_tag="TCM_016652" /note="dbxref CacaoGD:Thecc1EG016652" mRNA 33831372..33833434 /locus_tag="TCM_016652" /product="Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022624001" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09970.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09970.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc17t21; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc17t27" CDS 33831430..33833025 /locus_tag="TCM_016652" /codon_start=1 /product="Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative" /protein_id="EOY25289.1" /db_xref="Phytozome:POPTR_0003s09970.1" /translation="MSSESQIWVVPFFGQGHLFPCMELCKHIASRNFKTTFIISSNLF SSIPSSFQEHPLIEVAQIPSSPLSPPEPSSNPPNHPHNHHSDLAPGIEKLLENASRPA CAVIDIMMDWTGDTFKKFKIPTIGFFTSGACSAALEYAMWKARVVDIKPGETRLLPGL PEEMALTDSDLKHGPPPGPPPPGHGGFGFSLGPPGPPPPGLGGFGFPRGPPRPPPQGH GFFPGPPGGPGPQKMGPPQPGGQPPWMEAANDSVALMLNSCNDLEGPFLDYLGNQIGK PVWGVGPLLPQQFWKSSDSLLHDREIRANKQSDVTEDEVMEWLDSKPRGSVLYVSFGS EVAPTKQEFEQLADALEASNRPFIWVIQHGSGRPGPPPGPPQFLGNQPGSSDSHFEEE SYFPHGLDQRVGKRGLIIHGWAPQLLILSHPSTAGFLSHCGWNSTVEAIGRGVPLLAW PIRGDQHYNAKLVVNHLKVGCPIFDHLSQQMIKKDDITKGIEKLIGNEEIKKQAVTLS SKFHHGFPASSAASLDAFKDFIL" gene complement(33833452..33843426) /locus_tag="TCM_016653" /note="dbxref CacaoGD:Thecc1EG016653" mRNA complement(join(33833452..33833849,33833942..33834043, 33834140..33834235,33834591..33834731,33834814..33834858, 33835391..33835492,33835607..33835761,33835874..33835913, 33835995..33836224,33837131..33837286,33837382..33837453, 33837550..33837614,33838442..33838537,33838769..33838869, 33838984..33839024,33839189..33839305,33839390..33839457, 33840128..33840231,33840426..33840488,33841108..33841161, 33841919..33841993,33842449..33843426)) /locus_tag="TCM_016653" /product="Enhanced disease resistance 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29827.m002570" /inference="similar to AA sequence:ricco:29827.m002570" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11935t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11935t1" CDS complement(join(33833742..33833849,33833942..33834043, 33834140..33834235,33834591..33834731,33834814..33834858, 33835391..33835492,33835607..33835761,33835874..33835913, 33835995..33836224,33837131..33837286,33837382..33837453, 33837550..33837614,33838442..33838537,33838769..33838869, 33838984..33839024,33839189..33839305,33839390..33839457, 33840128..33840231,33840426..33840488,33841108..33841161, 33841919..33841993,33842449..33842586)) /locus_tag="TCM_016653" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29827.m002570" /codon_start=1 /product="Enhanced disease resistance 2 isoform 1" /protein_id="EOY25290.1" /db_xref="TAIR:AT4G19040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H6R3" /translation="MSKVVYEGWMVRYGRRKIGRSFIHMRYFVLETRLLAYYKRKPQD NQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWK EKIESIIEHQESQIANGNKYVSFEYKSGMDNGRTASSSDHESQFSAQEDEDDAHPNLL RRTTIGNGLPDSVLDWTREFDSELSNQNANNQAFSRKHWRLLQCQNGLRIFEELLEVD YLPRSCSRAMKAVGVVEATCEEIFGLVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILY HRLQLDWFPMIVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGG FNISPLKSRNEKPRTQVQHLMQIDLKGWGVGYISSFQQHCLLQMLNSVAGLREWFAQT DERGAPPRIPVMVNMASSSVSSKKTQKIDDLSVQSASSLDQITASRNSVMIDEYSDED EEQMPDAEHEAYATKSDNDVKRTALEEEPIEKIDLSCFSGNLRRDDRDNSRDCWRISD GNNFRVRSKHFCYDKTKIPAGKHLMDLVAVDWFKDTKRIDHVARRQGCAAQVASEKGL FSLVFNFQVPGSTHYSMVFYFVTRELVPGSLLHRFVDGDDEFRNSRLKLIPSVPKGSW IVRQSVGSTPCLLGKAVDCNYIRGPKYLEVDIDIGSSTVANGVLGLVIGVITTLVVDM AFLVQANTTDELPERLIGAVRVSHIELSSAIVPKLDADPF" mRNA complement(join(<33833803..33833849,33833942..33834043, 33834140..33834235,33834591..33834731,33834814..33834858, 33835391..33835492,33835607..33835761,33835874..33835913, 33836049..33836224,33837131..33837286,33837382..33837453, 33837550..33837614,33838442..33838537,33838769..33838869, 33838984..33839024,33839189..33839305,33839390..33839457, 33840128..33840231,33840426..33840488, 33841108..>33841143)) /locus_tag="TCM_016653" /product="Enhanced disease resistance 2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29827.m002570" /inference="similar to AA sequence:ricco:29827.m002570" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00526t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11935t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10411t1" CDS complement(join(<33833805..33833849,33833942..33834043, 33834140..33834235,33834591..33834731,33834814..33834858, 33835391..33835492,33835607..33835761,33835874..33835913, 33836049..33836224,33837131..33837286,33837382..33837453, 33837550..33837614,33838442..33838537,33838769..33838869, 33838984..33839024,33839189..33839305,33839390..33839457, 33840128..33840231,33840426..33840488, 33841108..>33841143)) /locus_tag="TCM_016653" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29827.m002570" /codon_start=1 /product="Enhanced disease resistance 2 isoform 2" /protein_id="EOY25291.1" /db_xref="TAIR:AT4G19040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H6R3" /translation="VYNKKEKYHRITMAAFNIQEALIWKEKIESIIEHQESQIANGNK YVSFEYKSGMDNGRTASSSDHESQFSAQEDEDDAHPNLLRRTTIGNGLPDSVLDWTRE FDSELSNQNANNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEAT CEEIFGLVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMIVWPRDLCY VRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKSRNEKPRTQVQH LMQIDLKGWGVGYISSFQQHCLLQMLNSVAGLREWFAQTDERGAPPRIPVMVNMASSS VSSKKTQKIDDLSVQSASSLDQITASRNSVMAYATKSDNDVKRTALEEEPIEKIDLSC FSGNLRRDDRDNSRDCWRISDGNNFRVRSKHFCYDKTKIPAGKHLMDLVAVDWFKDTK RIDHVARRQGCAAQVASEKGLFSLVFNFQVPGSTHYSMVFYFVTRELVPGSLLHRFVD GDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEVDIDIGSS TVANGVLGLVIGVITTLVVDMAFLVQANTTDELPERLIGAV" gene complement(33844376..33846142) /locus_tag="TCM_016655" /note="dbxref CacaoGD:Thecc1EG016655" mRNA complement(join(33844376..33844864,33844950..33845117, 33845178..33845230,33845448..33846142)) /locus_tag="TCM_016655" /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s05630.1" /inference="similar to AA sequence:Phytozome:Glyma08g26160.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04523t00001_C2" mRNA complement(join(33844530..33844864,33845178..33845230, 33845448..33846000)) /locus_tag="TCM_016655" /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s05630.1" /inference="similar to AA sequence:Phytozome:GSVIVT01026015001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00135t00007; inference alignment:Newbler:10:TSA:cgbaP1_g04523t00001_C2" CDS complement(join(33844633..33844864,33845178..33845230, 33845448..33845888)) /locus_tag="TCM_016655" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 2" /protein_id="EOY25293.1" /db_xref="Phytozome:GSVIVT01026015001" /translation="MAHLLQSQSFISRSSVWTEPRQQHRHACVKLGDQHRHGSWKIDG KRRARGTFFNGRVVQCCTTSSSSLASSSAKAAVKLIDGNAEENDNGRWGDGKDQPLYL ASEYGWKVRRLEEDQDEIRKVAQIQAEAFHQPMAFFDDFFFQFFQAEVLAALIYKLRN SPPSRRRKIASCLLKACDVLSVLWGFKFLVLRAYEDDFGARKLYSNAGYRVVSGDPPW MSYWIGRRRRVVLIKQCNFLNLI" CDS complement(join(33844633..33844864,33844950..33845117, 33845178..33845230,33845448..33845888)) /locus_tag="TCM_016655" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 1" /protein_id="EOY25292.1" /db_xref="Phytozome:Glyma08g26160.1" /db_xref="TAIR:AT1G72030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZ62" /translation="MAHLLQSQSFISRSSVWTEPRQQHRHACVKLGDQHRHGSWKIDG KRRARGTFFNGRVVQCCTTSSSSLASSSAKAAVKLIDGNAEENDNGRWGDGKDQPLYL ASEYGWKVRRLEEDQDEIRKVAQIQAEAFHQPMAFFDDFFFQFFQAEVLAALIYKLRN SPPSRYACLVAESSTDASESQRKLVGVVDVTAMRDESVIQHLHGAEEYLYVSGLAVSK CFRRRKIASCLLKACDVLSVLWGFKFLVLRAYEDDFGARKLYSNAGYRVVSGDPPWMS YWIGRRRRVVLIKQCNFLNLI" mobile_element complement(33845967..33846005) /note="source:scaffold_5_CACTA_0580 13320 13358" /mobile_element_type="transposon:TIR/CACTA" gene 33847867..33851252 /locus_tag="TCM_016657" /note="dbxref CacaoGD:Thecc1EG016657" mRNA join(33847867..33848069,33848902..33849360, 33850494..33851054) /locus_tag="TCM_016657" /product="C globular stage isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G32120.1" /inference="similar to AA sequence:TAIR:AT1G32120.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08727t00001; inference alignment:Newbler:10:TSA:cgbaL_g08727t00001" mRNA join(33848799..33849360,33850494..33851252) /locus_tag="TCM_016657" /product="C globular stage isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G32120.1" /inference="similar to AA sequence:TAIR:AT1G32120.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00386t00004_C2; alternateUTRof:Thecc1EG016657t1; inference alignment:Newbler:10:TSA:cgbaL_g08727t00001" CDS join(33849014..33849360,33850494..33850971) /locus_tag="TCM_016657" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="C globular stage isoform 1" /protein_id="EOY25294.1" /db_xref="TAIR:AT1G32120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZU8" /translation="MGSFKGHALPGTLFLTVGVWHIWSCVVRYVSNPKSFQVRVWNPV PGFDGKLKYLELYVVAIGAFIDLCIELLYSTHLKFLVNGVLNPSHLNDFEHSGMLLMF FLLGAIALLSEKTSFVSLPQEGLCLIAAAAFCAEYLLFYFHSTTHKGLEGYYHLVLVL LIGLCILTTVAGALFPNSFPVDLCSGIAITLQGLWFYQTAFTLYGPMMPDGCQLKGNA IYCRSADSEVRGELLANFQLFSLVLGVLVAVVGSYGFAASRYANSDLGSMHSVQDG" CDS join(33849014..33849360,33850494..33850971) /locus_tag="TCM_016657" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="C globular stage isoform 1" /protein_id="EOY25295.1" /db_xref="TAIR:AT1G32120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZU8" /translation="MGSFKGHALPGTLFLTVGVWHIWSCVVRYVSNPKSFQVRVWNPV PGFDGKLKYLELYVVAIGAFIDLCIELLYSTHLKFLVNGVLNPSHLNDFEHSGMLLMF FLLGAIALLSEKTSFVSLPQEGLCLIAAAAFCAEYLLFYFHSTTHKGLEGYYHLVLVL LIGLCILTTVAGALFPNSFPVDLCSGIAITLQGLWFYQTAFTLYGPMMPDGCQLKGNA IYCRSADSEVRGELLANFQLFSLVLGVLVAVVGSYGFAASRYANSDLGSMHSVQDG" mobile_element complement(33852253..33852366) /note="source:scaffold_5_CACTA_0607 7031 7133" /mobile_element_type="transposon:TIR/CACTA" gene 33852397..33854325 /locus_tag="TCM_016658" /note="dbxref CacaoGD:Thecc1EG016658" mRNA join(33852397..33852748,33853049..33853412, 33853929..33854325) /locus_tag="TCM_016658" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1486t1" CDS join(33852460..33852748,33853049..33853412, 33853929..33853947) /locus_tag="TCM_016658" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25296.1" /translation="MQVPCSRRQTRSSEPSPAPPPSVIYLIYKHCRGDLYTYSMYALK IVDAENGDTKLLPEPIFRLNKNSFSVAPGFCRNGLKIFYSWVECRRLDRAKTSEKHFA IVSDTLCKYDFALEKGLAEGKGLVDLDDENLVAHVDYGVVYPGDKKLCVVRCGLDRPL DHFNDDECRNFISCDIYKARGHRQKKTNLSGLVHLASSTCSMDDNPGFYGLLKACFPM RNEAE" gene complement(33854408..33859421) /locus_tag="TCM_016659" /note="dbxref CacaoGD:Thecc1EG016659" mRNA complement(join(33854408..33854753,33854975..33855058, 33855219..33855382,33855609..33855742,33856535..33856628, 33856915..33857023,33857808..33857856,33859189..33859421)) /locus_tag="TCM_016659" /product="Mob1/phocein family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g35130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037544t1" /inference="similar to AA sequence:frave:gene13526" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10407t2" mRNA complement(join(33854637..33855058,33855219..33855382, 33855609..33855742,33856535..33856628,33856915..33857023, 33857808..33857856,33859189..33859421)) /locus_tag="TCM_016659" /product="Mob1/phocein family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g35130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037544t1" /inference="similar to AA sequence:frave:gene13526" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11875t2; alternateUTRof:Thecc1EG016659t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10407t2" CDS complement(join(33854984..33855058,33855219..33855382, 33855609..33855742,33856535..33856628,33856915..33857023, 33857808..33857856,33859189..33859211)) /locus_tag="TCM_016659" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene13526; paralog of Thecc1EG037544t1" /codon_start=1 /product="Mob1/phocein family protein isoform 1" /protein_id="EOY25297.1" /db_xref="TAIR:AT5G45550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C1E8M5" /translation="MSLFGLGRNQRTFRPKKSAPSGSKGAQLKKHIDATLGSGNLREA VRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTPENCPTMTAGPKYEYRWADGVQ IKKPIEVSAPKYVEYLMDWIEVQLDDESIFPQKLGAPFPPNFKEVVKTIFKRLFRVYA HIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELAPLQELIESIIVPY" CDS complement(join(33854984..33855058,33855219..33855382, 33855609..33855742,33856535..33856628,33856915..33857023, 33857808..33857856,33859189..33859211)) /locus_tag="TCM_016659" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene13526; paralog of Thecc1EG037544t1" /codon_start=1 /product="Mob1/phocein family protein isoform 1" /protein_id="EOY25298.1" /db_xref="TAIR:AT5G45550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C1E8M5" /translation="MSLFGLGRNQRTFRPKKSAPSGSKGAQLKKHIDATLGSGNLREA VRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTPENCPTMTAGPKYEYRWADGVQ IKKPIEVSAPKYVEYLMDWIEVQLDDESIFPQKLGAPFPPNFKEVVKTIFKRLFRVYA HIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELAPLQELIESIIVPY" gene complement(33860408..33864669) /locus_tag="TCM_016660" /note="dbxref CacaoGD:Thecc1EG016660" mRNA complement(join(33860408..33863395,33864073..33864669)) /locus_tag="TCM_016660" /product="Nbs-lrr resistance-like protein" /inference="similar to AA sequence:Phytozome:POPTR_0003s10020.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11782t2" CDS complement(join(33861087..33863395,33864073..33864196)) /locus_tag="TCM_016660" /codon_start=1 /product="Nbs-lrr resistance-like protein" /protein_id="EOY25299.1" /db_xref="Phytozome:POPTR_0003s10020.1" /db_xref="TAIR:AT4G19050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZV0" /translation="MSNTGASTHEIGEEHEQVSAQETSGEHEMGIPQNLSEQHNEVMK LTATEVHAEKIFHLLETSSVSKIILTGEAGTGKTWMARRICKLFQEKRRICKLAVENN HDEPLWISLEQKHDESSLYDTIARQFSLPTSTDAREDTGKNEKKEGSVKSVKEEMEEK LKAAQQKMEEKLKAAQEFILIVLDGQVGTMTENDQKEEMVNKILGLEVCGQNHKDKFK ILITRRDNNGGWSEGMKKVVVEPLSGNEALKLLNKEIVVDEVLQLQGFKELSEAIQKK SKVLPANILMLAGTLNYIAKDNSGNLDLALEAAVNDLRQLLRYTYDKEPGNCMIDCFW HSWHFLGKHGGVHYNELITNWIMERDLNPTDPIEMAYEEGHHVLMKLIDYHLLKMQED NVVVLEGATLDMNEYCRRGYTETADPGLASVLKDYDWKVLEGITPADGMMKTLCSDKK EEMISSLLIDGSRLSREVHETFFGAKPNLSMLAIFYPRLKSFEELSISKMEKLLVLLL RGSYLLEDIKHISKLKALTVLEISGSTYLKEIPDEFFNQVSGLRSLNLSAVGIESLPS SFPELTELRRLILRQCSSLRELPKLVNFSKLEVIDLSESINLEKIQEKSFKSFEKLQL INFSGTKIEKLPIVKSLQNLKILLLRGCRQLVGMRSLKQVSSLKILDLSGAVKIREIM YDSFEGADDLRELDLSETQIQFLPSDICNLQKLRLKGCSSLIDLPELKGHSNLEELDL SGCKSLVKLPDLTALQNLKILVLNNCSKLESLPDLKSLSKLETLDICGTKLWSKDVED SLTRMTRLQILK" mobile_element complement(33864756..33865119) /note="source:CACAO_on_SSS_E94_scaffold_6 53 446" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(33865036..33865183) /note="source:scaffold_7_CACTA_0779 12200 12352" /mobile_element_type="transposon:TIR/CACTA" gene complement(33866417..33868771) /locus_tag="TCM_016661" /note="dbxref CacaoGD:Thecc1EG016661" mRNA complement(join(33866417..33867082,33867712..33867839, 33868609..33868771)) /locus_tag="TCM_016661" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.58 coverage" CDS complement(join(33867017..33867082,33867712..33867839, 33868609..33868681)) /locus_tag="TCM_016661" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25300.1" /translation="MRSVKSTIRLVPKRSVKNIGCGEHDDYMQEQDMERKLLASQFWV VRKSVSFSADGNCELNFPGAKDEEESLPSLPRALKFPHLRYVIR" gene 33870895..33872501 /locus_tag="TCM_016662" /note="dbxref CacaoGD:Thecc1EG016662" mRNA join(33870895..33871333,33871437..33872501) /locus_tag="TCM_016662" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.12 coverage" CDS join(33871049..33871333,33871437..33871505) /locus_tag="TCM_016662" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25301.1" /translation="MFFTDLLGTDLSCSSLISWVEAPVLLISHTLTIPASLRQRNQHK NDDKIGKLEFLETGEIKSQSTNGCKFPSSRKDEEQFTVLAWFCLLLPFGDQIFLFISE AGESDCPHQPTEGVT" mobile_element complement(33876334..33876717) /note="source:scaffold_2_CACTA_0244 14303 14702" /mobile_element_type="transposon:TIR/CACTA" gene 33877416..33880906 /locus_tag="TCM_016663" /note="dbxref CacaoGD:Thecc1EG016663" mRNA join(33877416..33879552,33879658..33880906) /locus_tag="TCM_016663" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29628.m000756.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016622t1" /inference="similar to AA sequence:ricco:29628.m000756" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11819t1" CDS join(33877635..33879552,33879658..33880076) /locus_tag="TCM_016663" /note="dbxref ricco:29628.m000756; paralog of Thecc1EG016622t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25302.1" /db_xref="TAIR:AT5G45530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SS00" /translation="MVDPIPSKVKSTWEKWNIRGTILFSLSMQTYLILFAPYRKCTRN KLLIIVIWSAYLLADAAANFTVGLISNRQGGDTKSGSKENNALVAFWAPFLLLHLGGP DTITAFALEDNELWLRHLLGLGFQAVATLYVFVQSIPNKLWISTTLMFVAGTIKYVER TRALYLASLDRFRDSMLKEADPGPNYAKLMEEYAFKRENKLPAQIIMVSEPDKEARAT DVPVKKGWLNDLEVVHYAYKYFLIFKGLVVDLIFSFRERNESREFFKEREADDALRVI EVELNFIYEVLYTKVEVVHSIWGYIFRGIAFGSVLAALGLFHFKTDRHEFNEFDVGIT YTLLLGAIALDVIALLMLIFSDWTSATIKDPDSNSGIIAMIFKGFLWLKRPRWRRHPC KTANPKLETTHYVLATPIVVRRWSGSLSSYNLVSYCLKSHSSRIHKFTRWPLVIAEKI TRFLHIDGCYRFVVDLIKAVIKKVIEFLSCVICILGFIKDKVGKLFTFVVGKFKQIPS LLRIISKISVFLSYAHKIIMGSMGLNDLIDQILYVSREPFTKELWRFIFNELKTKADY ADDPEAAKRISAARGEWVLTDSDTKVDRSTLMQYVTDVQYDESLLLWHIATDICYNTP DEKLVDKESYDYREFKAERFFERRGLLSKRKGNKKKENRVAEACEAIISVNTDVKPVT VKGDRSKSVLFDASMLAKELNVLEKKGLQKWKLLSRVWVELISYAASHCRANTHAQQL SKGGELLTFIWLLMAHFGLGEQFQINEGHARAKLIVGK" gene 33880722..33884158 /locus_tag="TCM_016664" /note="dbxref CacaoGD:Thecc1EG016664" mRNA 33880722..33884158 /locus_tag="TCM_016664" /product="Leucine-rich repeat family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04040.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016623t1" /inference="similar to AA sequence:TAIR:AT5G45520.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11831t1" CDS 33880995..33883697 /locus_tag="TCM_016664" /note="paralog of Thecc1EG016623t1" /codon_start=1 /product="Leucine-rich repeat family protein, putative" /protein_id="EOY25303.1" /db_xref="TAIR:AT5G45520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHI4" /translation="MSSTNVGSELKGSTESPLTIQEIIERISKLRDSLPSEDEEEGDS PQQTTGGTITAADKQDGSESGDVRQENDDETNKQEEDVSQQENNDESKKKGEDVSQQE NNEESNKMDEDASKKKTDESNKKDKDAKKKKSDESNKRKDVLHELVKFRKELQYMISS FEKLKKFETNLREPLQTLDDNVQDILKDLPCVTVSELPKQVPLNLRVLRNNITRVKIQ IPLQHQTANTNSEANRPWQTTVATSEADLPHLYDEAKFESSYYFKEIEEKYNELDDRQ KLCLLCFVIFPENAEMKKRLLRFWWVGEKLLSVKEEKEEMELVSQTIQTFVEKGLIEP VQKKNKLQPRSYKMNPIVRSCLIKFAKQAGFFDYDSEGKPTMDFSSCKKACMVKSGAP ADWFSAYLTGTVTETAQNEGTVTETEQKKGTATDRLSADLVKLQMLFNFPKRKTLLEA SQRFHELQTLFNISKQFPALPKEWFSKMTGIKVLYLGRWESAAGRQRHIEVEDTDFFK GLKYMKKLRLLSLQGISGIPKLPSSLCKLANLRILDLRACHSLEKLPERIGSLKKLTY LDSSECYLLDDMPKQLNQLEQLQVLKGFVIGNDRNSCTLADLAELKKLRKLSVNVNTT EFNIEDAGLALSKFQKLQKLKIAWGSGGLTGNNSTQNSSGQQSDPSNPNGGESKKQDK DAVKPKTQNQVSGAAKSPSGKQDKGEDNGNRESSAGDQEGAYKKLKSGEANSKSMNQE DDKKGRNIGAAKSVAFNVSEKHGSKKQETVLQKRTPLMKLTSLRRERKPTNFEGLESL VKLDLQCFPHIEPPTWLTPKMLNSLQNLSVRGGRLRHLNQEGKEKWKVETLRLKFLID FKMNWKEMLEQFPKLKYLEKVRCPRITFCPCDARGVWQESPKSS" gene complement(33884218..33891864) /locus_tag="TCM_016665" /note="dbxref CacaoGD:Thecc1EG016665" mRNA complement(join(33884218..33885808,33886775..33886857, 33887614..33887768,33887870..33888146,33888237..33888448, 33888567..33888677,33888749..33888859,33888961..33889058, 33889169..33889263,33889367..33889560,33889654..33889824, 33889913..33890031,33890130..33890217,33890303..33890408, 33890498..33890586,33890668..33890904,33891020..33891086, 33891188..33891300,33891397..33891492,33891597..33891864)) /locus_tag="TCM_016665" /product="Beta-galactosidase 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s14130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026970t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s07470.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc4262t1" CDS complement(join(33884793..33885808,33886775..33886857, 33887614..33887768,33887870..33888146,33888237..33888448, 33888567..33888677,33888749..33888859,33888961..33889058, 33889169..33889263,33889367..33889560,33889654..33889824, 33889913..33890031,33890130..33890217,33890303..33890408, 33890498..33890586,33890668..33890904,33891020..33891086, 33891188..33891300,33891397..33891492,33891597..33891749)) /locus_tag="TCM_016665" /note="paralog of Thecc1EG026970t1" /codon_start=1 /product="Beta-galactosidase 7" /protein_id="EOY25304.1" /db_xref="Phytozome:POPTR_0018s07470.1" /db_xref="TAIR:AT5G20710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCV5" /translation="MWNSWILVAGLALLCTSSAMQVDHDANAMIIDGERKLIFSGAIH YPRSTPEMWPDLIKKAKDGGLNAIETYIFWNAHEPRPRQYNFSGNLDFIKFFKLVHEA GLYGILRIGPYVCAEWNYGGFPVWLHNIDGIELRTNNEIYKKEMQIFTTKIVEMCKEA NLFAPQGGPIILSQIENEYGNIMDKYKEKGKEYVKWCAEMAVAQNVGVPWIMCQQGDA PQPMINTCNGFYCDQFKPNNQKSPKMFTENWTGWFKKWGQKDPYRTAEDLAYSVARFF QLGGVLINYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGNLNQPKWGHLKQLHEAL RVGEKFLTNGTSETKDSGDGIQLTTFTDGQTGERFCFLSNTNNNKDVNVDLKDDGMHF VPAWSVSILGACKKEIYNSAKVNTQTSVMVKKQIGDEDKSAQFNWTWTLEPMRDTLEG KGTFSANTLLEQKRASDDLSDYLWYMTSVDINGTSFNEGTIFANSSGQVVHAYVNGRL IGTKSGYSFQFRNPVSLVPGRNNITLLSVTVGLQNYGDHFDLGPEGVTGPVGLIDVGN KTIDLSSNAWNYKVGLNGEAKKLYDPNSPNLQLWRTSEELPIGRPMTWYKTAFKAPSG TDPVVLDLMGMGKGHAWINGNSIGRFWPAQIADNNGCTDECDYRGAYKEQKCLSNCGN PSQRWYHVPRSFITSGTNFLVLFEEIGGDPSEVSFQTVTTGSICANANEGSLLELSCH GGNVISKIEFASYGNPKGRCGSLTKGSCEAEGSLSALEKICVGKESCTVDVSEKTFGS ADCGEDKKSLAVEALCENQMVYLRELKKKKNQSGGSSWGFPPATFDQKQKQKQLGLPT PPRDMANSSEQQSRGSRNGSDRIETLYDQYQRNLPSSSEEKSSKGKFHNRVDKFFKAA ARGDNPSSNKDQTQADNPAAPPNGKATQTQNNSDEGSSSQKRKIRKTYSHPPKVRGFE YDERSLEMMLLEGGKDNSFKTIGVVGPPGVGKTTLCKSILENERVKRSYGRRIWVSLP EKPEDETTLDHAGATEDIVELIYDEHKLPRLLRDQQLKEKKYLIVLDDVGEGEIDSYY NALKACFSDELPKEKGGAVIVTSRSEEAAKKVIGDKHLHRLLPLSDPKSCWLIYTDAV EGFPTPEDATASKDVMEELMKKSGGLPGAAQMMGKIKAAKKGNNNSSLRS" gene 33893465..33895114 /locus_tag="TCM_016666" /note="dbxref CacaoGD:Thecc1EG016666" mRNA join(33893465..33893834,33893922..33894017, 33894134..33894182,33894515..33894636,33894941..33895114) /locus_tag="TCM_016666" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400053788" /inference="similar to AA sequence:frave:gene29737" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13705t00001" CDS join(33893511..33893834,33893922..33894017, 33894134..33894182,33894515..33894600) /locus_tag="TCM_016666" /note="dbxref frave:gene29737" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25305.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUC2" /translation="MQKRRNQGSPLPLASPAPEENDSPQELTIFKNRKRNIANASYSN SASTALFNLQSTPPDRKTLTTISDLKQLASSRLEDIKRSLIDRSHSEILKDLEASHSR LQKRFKIQTQACQQAMDEAEGECKKMSEKINGSREAMKATYAEFMADAQATASRVCKT SISELSKSFEKGIDNLRAQFGIPS" gene 33895649..33897656 /locus_tag="TCM_016667" /note="dbxref CacaoGD:Thecc1EG016667" mRNA join(33895649..33895904,33896527..33897656) /locus_tag="TCM_016667" /product="PAM68, chloroplastic, putative isoform 3" /inference="similar to AA sequence:ricco:29827.m002587" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:PASA:2:TSA:puevd3b016102t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11804t2" mRNA join(33895655..33895904,33896527..33897193, 33897319..33897644) /locus_tag="TCM_016667" /product="PAM68, chloroplastic, putative isoform 1" /inference="similar to AA sequence:ricco:29827.m002587" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03026t00002; alternateUTRof:Thecc1EG016667t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11804t2" mRNA join(33895700..33895703,33895825..33895904, 33896527..33897193,33897319..33897656) /locus_tag="TCM_016667" /product="PAM68, chloroplastic, putative isoform 1" /inference="similar to AA sequence:ricco:29827.m002587" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11804t2" mRNA join(33895763..33895904,33896527..33897224) /locus_tag="TCM_016667" /product="PAM68, chloroplastic, putative isoform 3" /inference="similar to AA sequence:ricco:29827.m002587" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13310t00001; alternateUTRof:Thecc1EG016667t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11804t2" CDS join(33895863..33895904,33896527..33897193, 33897319..33897347) /locus_tag="TCM_016667" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29827.m002587" /codon_start=1 /product="PAM68, chloroplastic, putative isoform 1" /protein_id="EOY25306.1" /db_xref="TAIR:AT4G19100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49668" /translation="MAGVALSSLSCSYKIDHGNEKSTLVCKLCRHVQINDGRKVEKTM ESSSFTGTTALKPSSLVSPIITICQFPVTKHPRNQVRSLYLVPLYATLNSPRGFGPPP KKNKKTKKSKSGDVKEEEDDDDEEEEEFEPEAGVIPEIVTNRMISRMGFSVGVPLFIG LLFFPFFYYLKVVLKIDVPTWVPFIVSFFFFGTALLGVSYGIVSSSWDPLREGSLLGW NEAQKNWPVFWQSIWGGSQIYIFLEWS" CDS join(33895863..33895904,33896527..33897193, 33897319..33897347) /locus_tag="TCM_016667" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29827.m002587" /codon_start=1 /product="PAM68, chloroplastic, putative isoform 1" /protein_id="EOY25307.1" /db_xref="TAIR:AT4G19100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49668" /translation="MAGVALSSLSCSYKIDHGNEKSTLVCKLCRHVQINDGRKVEKTM ESSSFTGTTALKPSSLVSPIITICQFPVTKHPRNQVRSLYLVPLYATLNSPRGFGPPP KKNKKTKKSKSGDVKEEEDDDDEEEEEFEPEAGVIPEIVTNRMISRMGFSVGVPLFIG LLFFPFFYYLKVVLKIDVPTWVPFIVSFFFFGTALLGVSYGIVSSSWDPLREGSLLGW NEAQKNWPVFWQSIWGGSQIYIFLEWS" CDS join(33895863..33895904,33896527..33897204) /locus_tag="TCM_016667" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29827.m002587" /codon_start=1 /product="PAM68, chloroplastic, putative isoform 3" /protein_id="EOY25308.1" /db_xref="TAIR:AT4G19100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49668" /translation="MAGVALSSLSCSYKIDHGNEKSTLVCKLCRHVQINDGRKVEKTM ESSSFTGTTALKPSSLVSPIITICQFPVTKHPRNQVRSLYLVPLYATLNSPRGFGPPP KKNKKTKKSKSGDVKEEEDDDDEEEEEFEPEAGVIPEIVTNRMISRMGFSVGVPLFIG LLFFPFFYYLKVVLKIDVPTWVPFIVSFFFFGTALLGVSYGIVSSSWDPLREGSLLGW NEAQKNWPVFWQSIWGGSRKK" CDS join(33895863..33895904,33896527..33897204) /locus_tag="TCM_016667" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29827.m002587" /codon_start=1 /product="PAM68, chloroplastic, putative isoform 3" /protein_id="EOY25309.1" /db_xref="TAIR:AT4G19100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49668" /translation="MAGVALSSLSCSYKIDHGNEKSTLVCKLCRHVQINDGRKVEKTM ESSSFTGTTALKPSSLVSPIITICQFPVTKHPRNQVRSLYLVPLYATLNSPRGFGPPP KKNKKTKKSKSGDVKEEEDDDDEEEEEFEPEAGVIPEIVTNRMISRMGFSVGVPLFIG LLFFPFFYYLKVVLKIDVPTWVPFIVSFFFFGTALLGVSYGIVSSSWDPLREGSLLGW NEAQKNWPVFWQSIWGGSRKK" gene 33899456..33902316 /locus_tag="TCM_016668" /note="dbxref CacaoGD:Thecc1EG016668" mRNA join(33899456..33899991,33901701..33902316) /locus_tag="TCM_016668" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc81t40" CDS 33901926..33902240 /locus_tag="TCM_016668" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25310.1" /translation="MVHHASLIISSSQNCDDEIPAIECPRWNHTQPLPATYPTSGTRK RSRPFLASAKTRGPPMSSPTWTGFFPLKDPPSPLPSPSPNGSSLLKNNRKIFVLAPFS VT" gene 33902420..33908444 /locus_tag="TCM_016669" /note="dbxref CacaoGD:Thecc1EG016669" mRNA join(33902420..33902708,33902832..33902960, 33904002..33904174,33906527..33906921,33907388..33907517, 33907806..33908170,33908336..33908444) /locus_tag="TCM_016669" /product="DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein" /inference="alignment:exonerate- protein:2:ricco:29827.m002586" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029106t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01410.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc81t52" CDS join(33904058..33904174,33906527..33906921, 33907388..33907517,33907806..33908170,33908336..33908414) /locus_tag="TCM_016669" /note="paralog of Thecc1EG029106t1" /codon_start=1 /product="DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein" /protein_id="EOY25311.1" /db_xref="Phytozome:POPTR_0001s01410.1" /db_xref="TAIR:AT1G31880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q17TI5" /translation="MFTCIACTKQMADGGEEVEGARGSGTPSTKEAVKSLTAQIKDMA LKFSGAYKQCKPCTGSSSYKKGHRPYPDFDAASEGVPYPYMGGSSSSTPAWDFTSASH HPGRSDSRFTGVFSGDRTPGGMDSMFAQDLVLEDEDEPKEWMAQVEPGVHITFVSLPN GGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALHTPPRSEDEMQRD SSYSRMGSAMESPMPHWTPRYNYKPSGSKGYFPSENMDQGGTQHYSAGPSAYGAGGPR GEASFDASRTTTSSRDEPSVSVSNASEMEAEWVEQDEPGVYITIRQLADGTRELRRVR FSRERFGEVNAKQWWEENRERIQTQYL" gene complement(33909138..33914976) /locus_tag="TCM_016670" /note="dbxref CacaoGD:Thecc1EG016670" mRNA complement(join(33909138..33909765,33909990..33910068, 33910169..33910203,33910569..33910685,33910786..33910849, 33910969..33911037,33911185..33911250,33911408..33911516, 33911691..33911757,33911869..33911921,33912009..33912111, 33912244..33912382,33912477..33912566,33912646..33912714, 33912820..33912898,33912984..33913125)) /locus_tag="TCM_016670" /product="Kinase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002758t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10090.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12155t4; inference alignment:Newbler:10:TSA:cgbaL_g02827t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc349t24" mRNA complement(join(33909221..33909765,33909990..33910068, 33910169..33910200,33910569..33910685,33910786..33910849, 33910969..33911037,33911185..33911250,33911408..33911516, 33911691..33911757,33911869..33911921,33912009..33912111, 33912244..33912382,33912477..33912566,33912646..33912714, 33912820..33912898,33912984..33913033,33913514..33913542, 33913659..33913709,33913778..33914038,33914768..33914976)) /locus_tag="TCM_016670" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002758t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10090.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02827t00002; inference alignment:Newbler:10:TSA:cgbaL_g02827t00002" mRNA complement(join(33909221..33909765,33909990..33910068, 33910169..33910200,33910569..33910685,33910786..33910849, 33910969..33911037,33911185..33911250,33911408..33911516, 33911691..33911757,33911869..33911921,33912009..33912111, 33912244..33912382,33912477..33912566,33912646..33912714, 33912820..33912898,33912984..33913033,33913299..33913378)) /locus_tag="TCM_016670" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002758t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10090.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b016105t1a2; alternateUTRof:Thecc1EG016670t1; inference alignment:Newbler:10:TSA:cgbaL_g02827t00002" CDS complement(join(33909548..33909765,33909990..33910068, 33910169..33910200,33910569..33910685,33910786..33910849, 33910969..33911037,33911185..33911250,33911408..33911516, 33911691..33911757,33911869..33911921,33912009..33912111, 33912244..33912382,33912477..33912566,33912646..33912714, 33912820..33912898,33912984..33912991)) /locus_tag="TCM_016670" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002758t1" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY25312.1" /db_xref="Phytozome:POPTR_0003s10090.1" /db_xref="TAIR:AT4G19110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHJ3" /translation="MERYKLIKEVGDGTFGSVWRAINKLSGEVVAIKKMKKKYYSWEE CVNLREVKSLRRMNHPNIVKLKEVIRENDILYFVFEYLECSLYQLMKDREKLFSEVEI RNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAREISSQPPYTEYVS TRWYRAPEVLLQSFLYTSKVDMWAMGAIMAELFTLRPLFPGTSEADEIYKICSVVGTP SKDSWLDGLNLARAINYQFPQFTGVHLSVLIPSASDDAINLVTSLCSWDPCKRPTAAE ALQHPFFQSCFYVPPSLRPRSAISRTPPSVGVRGTLEQQSARRYPGVLPNAKLTGNLN SAKINASFGTGVQRKLEMVNRDPTKNDKSLKNPAKQPKYRPPGRKSPVSFNKDRTARG ASDVAEKLANVTIGNRRQSVGQLRPPPMKAGVQWTAESNDMFLRPTQQLQSGRTFSRK VAG" CDS complement(join(33909548..33909765,33909990..33910068, 33910169..33910200,33910569..33910685,33910786..33910849, 33910969..33911037,33911185..33911250,33911408..33911516, 33911691..33911757,33911869..33911921,33912009..33912111, 33912244..33912382,33912477..33912566,33912646..33912714, 33912820..33912898,33912984..33912991)) /locus_tag="TCM_016670" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002758t1" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY25313.1" /db_xref="Phytozome:POPTR_0003s10090.1" /db_xref="TAIR:AT4G19110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHJ3" /translation="MERYKLIKEVGDGTFGSVWRAINKLSGEVVAIKKMKKKYYSWEE CVNLREVKSLRRMNHPNIVKLKEVIRENDILYFVFEYLECSLYQLMKDREKLFSEVEI RNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAREISSQPPYTEYVS TRWYRAPEVLLQSFLYTSKVDMWAMGAIMAELFTLRPLFPGTSEADEIYKICSVVGTP SKDSWLDGLNLARAINYQFPQFTGVHLSVLIPSASDDAINLVTSLCSWDPCKRPTAAE ALQHPFFQSCFYVPPSLRPRSAISRTPPSVGVRGTLEQQSARRYPGVLPNAKLTGNLN SAKINASFGTGVQRKLEMVNRDPTKNDKSLKNPAKQPKYRPPGRKSPVSFNKDRTARG ASDVAEKLANVTIGNRRQSVGQLRPPPMKAGVQWTAESNDMFLRPTQQLQSGRTFSRK VAG" CDS complement(join(33909548..33909765,33909990..33910068, 33910169..33910203,33910569..33910685,33910786..33910849, 33910969..33911037,33911185..33911250,33911408..33911516, 33911691..33911757,33911869..33911921,33912009..33912111, 33912244..33912382,33912477..33912566,33912646..33912714, 33912820..33912898,33912984..33912991)) /locus_tag="TCM_016670" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG002758t1" /codon_start=1 /product="Kinase superfamily protein isoform 3" /protein_id="EOY25314.1" /db_xref="Phytozome:POPTR_0003s10090.1" /db_xref="TAIR:AT4G19110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHJ3" /translation="MERYKLIKEVGDGTFGSVWRAINKLSGEVVAIKKMKKKYYSWEE CVNLREVKSLRRMNHPNIVKLKEVIRENDILYFVFEYLECSLYQLMKDREKLFSEVEI RNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAREISSQPPYTEYVS TRWYRAPEVLLQSFLYTSKVDMWAMGAIMAELFTLRPLFPGTSEADEIYKICSVVGTP SKDSWLDGLNLARAINYQFPQFTGVHLSVLIPSASDDAINLVTSLCSWDPCKRPTAAE ALQHPFFQSCFYVPPSLRPRSAISRTPPSVGVRGTLEQQSARRYPGVLPNAKLTGNLN SAKINASFGTAGVQRKLEMVNRDPTKNDKSLKNPAKQPKYRPPGRKSPVSFNKDRTAR GASDVAEKLANVTIGNRRQSVGQLRPPPMKAGVQWTAESNDMFLRPTQQLQSGRTFSR KVAG" mRNA complement(join(33909749..33910200,33910569..33910685, 33910786..33910849,33910969..33911037,33911185..33911250, 33911408..33911516,33911691..33911757,33911869..33911921, 33912009..33912111,33912244..33912382,33912477..33912566, 33912646..33912714,33912820..33912898,33912984..33913537)) /locus_tag="TCM_016670" /product="Kinase superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002758t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10090.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc349t18; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc349t24; inference alignment:Newbler:10:TSA:cgbaL_g02827t00002" CDS complement(join(33910154..33910200,33910569..33910685, 33910786..33910849,33910969..33911037,33911185..33911250, 33911408..33911516,33911691..33911757,33911869..33911921, 33912009..33912111,33912244..33912382,33912477..33912566, 33912646..33912714,33912820..33912898,33912984..33912991)) /locus_tag="TCM_016670" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG002758t1" /codon_start=1 /product="Kinase superfamily protein isoform 4" /protein_id="EOY25315.1" /db_xref="Phytozome:POPTR_0003s10090.1" /db_xref="TAIR:AT4G19110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHJ3" /translation="MERYKLIKEVGDGTFGSVWRAINKLSGEVVAIKKMKKKYYSWEE CVNLREVKSLRRMNHPNIVKLKEVIRENDILYFVFEYLECSLYQLMKDREKLFSEVEI RNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAREISSQPPYTEYVS TRWYRAPEVLLQSFLYTSKVDMWAMGAIMAELFTLRPLFPGTSEADEIYKICSVVGTP SKDSWLDGLNLARAINYQFPQFTGVHLSVLIPSASDDAINLVTSLCSWDPCKRPTAAE ALQHPFFQSCFYVPPSLRPRSAISRTPPSVGVRGTLEQQSARRYPGVLPNAKLTGNLN SAKINASFGTGVQRKLEMVNRVIAI" gene complement(33915294..33922694) /locus_tag="TCM_016671" /note="dbxref CacaoGD:Thecc1EG016671" mRNA complement(join(33915294..33915355,33917129..33917525, 33917616..33917818,33917910..33918203,33918314..33918437, 33919590..33920996,33922475..33922694)) /locus_tag="TCM_016671" /product="Mechanosensitive channel of small conductance-like 10" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g17530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025703t1" /inference="similar to AA sequence:ricco:30148.m001443" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11807t2" mobile_element complement(33916039..33916145) /note="source:CACAO_hAT_E421_scaffold_1 1280 1389" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(33917071..33917148) /note="source:scaffold_1_CACTA_0005 6614 6689" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(33917261..33917525,33917616..33917818, 33917910..33918203,33918314..33918437,33919590..33920830)) /locus_tag="TCM_016671" /note="dbxref ricco:30148.m001443; paralog of Thecc1EG025703t1" /codon_start=1 /product="Mechanosensitive channel of small conductance-like 10" /protein_id="EOY25316.1" /db_xref="TAIR:AT5G12080.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RK20" /translation="MEDRAKSDQVVVIMDQGNPVGPSMETELKEGQAAAETKPQIPAR AKTLRRLSVSKPKARFLEYNYPQKRFPESNGLEPLLDDIHQSSTDEDDDDDDDEEEWN DEFDEDGGEKGQKRHQKRRTKRLNWRLLTEWVLFFVITTCLISSLTIESLKTKRSWGL EIWKWCLMVLVTFCGRLVSGWLIALAVFFIERNFMLREKVLYFVYGLRKSIQNCIWLG LVLLSYTFMFDTKVHSKENKVLRKVFQALVAVLLGAIIWLIKIVLVKMLASSFHVTTY FDRMKESVFHHYILDTLSGPPMDEQIIMHEQHHSLSESKSLPSNWKQKKWKEARNIYK SKKFGSRKIDMEKLRELSMERPASAWSVKRLVSYVMSSGLSTISTTVDDFGKAESEIT SEWEARNTAQRIFKNVAKPGYKYIEEEDLMRFLKGVEVYTILPLFEGALETGRISKSS FRNWVVRAYFERKFLAHSLNDTKTAVQQLHKLASAVVIVIIVVVSLLVMEVATYRIVF LVLTQLVVAGVMFQNTCKMVFESIVFIFIMHPFDIGDRCVIDGVQMIVEEMNILTTVF LRYDMEKIYYPNWVLLSKPISNFYRSPEMGDTVDFQIDISTSLETIMALKKAIQAYIE SKPKYWNPKHSVIVKQIENLNKLKMSLCVQHTINHQNYGERSNRITELILELKKIFEN LDIKYHLLPQEVRLSQVNLDNWRMMQ" gene complement(33921155..33922231) /locus_tag="TCM_016672" /note="dbxref CacaoGD:Thecc1EG016672" mRNA complement(join(33921155..33921855,33921947..33922231)) /locus_tag="TCM_016672" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage" CDS complement(33921547..33921768) /locus_tag="TCM_016672" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25317.1" /translation="MIMCHEKSIANSKRLGMAYKPLRQIKLPFQIKKSVKGQNNDKAF EEGQGCCCWLLFQLVSFSFVLLTIFMASC" gene complement(33922321..33928210) /locus_tag="TCM_016673" /note="dbxref CacaoGD:Thecc1EG016673" mRNA complement(join(33922321..33923184,33923829..33923906, 33924038..33924713,33924866..33925076,33925220..33925415, 33925523..33925671,33925755..33926054,33927606..33927610, 33927810..33928015)) /locus_tag="TCM_016673" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022775001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015565t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01380.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1350t5_C2" mRNA complement(join(33922531..33923184,33923829..33923906, 33924038..33924713,33924866..33925076,33925220..33925415, 33925523..33925671,33925755..33926054,33927606..33927934)) /locus_tag="TCM_016673" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022775001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015565t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01380.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1363t1; alternateUTRof:Thecc1EG016673t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1350t5_C2" mRNA complement(join(33922534..33923184,33923829..33923906, 33924038..33924713,33924866..33925076,33925220..33925415, 33925523..33925671,33925755..33926054,33927810..33928210)) /locus_tag="TCM_016673" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022775001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015565t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01380.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1349t4; alternateUTRof:Thecc1EG016673t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1350t5_C2" CDS complement(join(33922962..33923184,33923829..33923906, 33924038..33924713,33924866..33925076,33925220..33925415, 33925523..33925671,33925755..33926033)) /locus_tag="TCM_016673" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015565t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY25318.1" /db_xref="Phytozome:POPTR_0001s01380.1" /db_xref="TAIR:AT4G19120.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94II3" /translation="MKHKDGKYHSQPDKGFKVFPATLLVIVLCGFSFYLGGIFCSEKN NLEGKTVQDVSKAVPSPKESAINPLQIKPITFQECSIDYQDYTPCTDPRRWKKYGVHR LTFLERHCPPAFERKECLVPPPDGYKPPITWPKSRDECWYRNVPYDWINKQKSNQNWL RKQGDKFLFPGGGTMFPRGVGAYVDLMQDLIPEMRDGTVRTAIDTGCGVASWGGDLLD RGILTVSLAPRDNHEAQVQFALERGIPAILGVISTQRLPFPSNSFDMAHCSRCLIPWT EFGGIYLLEVHRILRPGGFWVLSGPPVNYENRWRGWNTTVEEQKSDYEKLEDLLTSMC FKLYAKKDDIAVWQKSSDNSCYDKLTDPDAYPAKCDDSLEPDSAWYTPLRPCVVVPSP KLKKTALESLPKWPERLEVAPERISDIPGGSASTLKHDDSKWKVRAKHYKKLLSAIGT DKIRNVMDMNTVYGGFATALIDDPLWVMNVVSSYAANTLPVVYDRGLIGTYHDWCEAF STYPRTYDLLHLDGLFTAESQRCDMKYVLLEMDRILRPNGYALIRESSYFVDAIATIA KGLRWGCHKEDTEYGVEKEKILICQKKLWYSSNSSSR" CDS complement(join(33922962..33923184,33923829..33923906, 33924038..33924713,33924866..33925076,33925220..33925415, 33925523..33925671,33925755..33926033)) /locus_tag="TCM_016673" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015565t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY25319.1" /db_xref="Phytozome:POPTR_0001s01380.1" /db_xref="TAIR:AT4G19120.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94II3" /translation="MKHKDGKYHSQPDKGFKVFPATLLVIVLCGFSFYLGGIFCSEKN NLEGKTVQDVSKAVPSPKESAINPLQIKPITFQECSIDYQDYTPCTDPRRWKKYGVHR LTFLERHCPPAFERKECLVPPPDGYKPPITWPKSRDECWYRNVPYDWINKQKSNQNWL RKQGDKFLFPGGGTMFPRGVGAYVDLMQDLIPEMRDGTVRTAIDTGCGVASWGGDLLD RGILTVSLAPRDNHEAQVQFALERGIPAILGVISTQRLPFPSNSFDMAHCSRCLIPWT EFGGIYLLEVHRILRPGGFWVLSGPPVNYENRWRGWNTTVEEQKSDYEKLEDLLTSMC FKLYAKKDDIAVWQKSSDNSCYDKLTDPDAYPAKCDDSLEPDSAWYTPLRPCVVVPSP KLKKTALESLPKWPERLEVAPERISDIPGGSASTLKHDDSKWKVRAKHYKKLLSAIGT DKIRNVMDMNTVYGGFATALIDDPLWVMNVVSSYAANTLPVVYDRGLIGTYHDWCEAF STYPRTYDLLHLDGLFTAESQRCDMKYVLLEMDRILRPNGYALIRESSYFVDAIATIA KGLRWGCHKEDTEYGVEKEKILICQKKLWYSSNSSSR" CDS complement(join(33922962..33923184,33923829..33923906, 33924038..33924713,33924866..33925076,33925220..33925415, 33925523..33925671,33925755..33926033)) /locus_tag="TCM_016673" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015565t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY25320.1" /db_xref="Phytozome:POPTR_0001s01380.1" /db_xref="TAIR:AT4G19120.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94II3" /translation="MKHKDGKYHSQPDKGFKVFPATLLVIVLCGFSFYLGGIFCSEKN NLEGKTVQDVSKAVPSPKESAINPLQIKPITFQECSIDYQDYTPCTDPRRWKKYGVHR LTFLERHCPPAFERKECLVPPPDGYKPPITWPKSRDECWYRNVPYDWINKQKSNQNWL RKQGDKFLFPGGGTMFPRGVGAYVDLMQDLIPEMRDGTVRTAIDTGCGVASWGGDLLD RGILTVSLAPRDNHEAQVQFALERGIPAILGVISTQRLPFPSNSFDMAHCSRCLIPWT EFGGIYLLEVHRILRPGGFWVLSGPPVNYENRWRGWNTTVEEQKSDYEKLEDLLTSMC FKLYAKKDDIAVWQKSSDNSCYDKLTDPDAYPAKCDDSLEPDSAWYTPLRPCVVVPSP KLKKTALESLPKWPERLEVAPERISDIPGGSASTLKHDDSKWKVRAKHYKKLLSAIGT DKIRNVMDMNTVYGGFATALIDDPLWVMNVVSSYAANTLPVVYDRGLIGTYHDWCEAF STYPRTYDLLHLDGLFTAESQRCDMKYVLLEMDRILRPNGYALIRESSYFVDAIATIA KGLRWGCHKEDTEYGVEKEKILICQKKLWYSSNSSSR" mobile_element complement(33930999..33931118) /note="source:scaffold_1_CACTA_0008 14048 14161" /mobile_element_type="transposon:TIR/CACTA" gene complement(33933807..33936706) /locus_tag="TCM_016674" /note="dbxref CacaoGD:Thecc1EG016674" mRNA complement(join(33933807..33934788,33935222..33935515, 33935640..33935806,33936586..33936681)) /locus_tag="TCM_016674" /product="Zinc finger B-box domain containing protein 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046954t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01370.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10195t00001" mRNA complement(join(33933825..33934788,33935222..33935509, 33935640..33935806,33936586..33936706)) /locus_tag="TCM_016674" /product="Zinc finger B-box domain containing protein 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046954t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01370.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11825t1; inference alignment:Newbler:10:TSA:cgbaL_g10195t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc951t6" mRNA complement(join(33933832..33934788,33935222..33935515, 33935901..33936081)) /locus_tag="TCM_016674" /product="Zinc finger B-box domain containing protein 1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046954t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01370.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc958t3_C1; inference alignment:Newbler:10:TSA:cgbaL_g10195t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc951t6" mRNA complement(join(33933832..33934788,33935222..33935515, 33935640..33935806,33935902..33935926)) /locus_tag="TCM_016674" /product="Zinc finger B-box domain containing protein 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046954t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01370.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc958t1; alternateUTRof:Thecc1EG016674t1; inference alignment:Newbler:10:TSA:cgbaL_g10195t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc951t6" CDS complement(join(33934168..33934788,33935222..33935509, 33935640..33935780)) /locus_tag="TCM_016674" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG046954t1" /codon_start=1 /product="Zinc finger B-box domain containing protein 1 isoform 3" /protein_id="EOY25323.1" /db_xref="Phytozome:POPTR_0001s01370.1" /db_xref="TAIR:AT5G45410.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SW23" /translation="MDFWFKGINEDTSECSFNERDIQRCPFLRNINKPTNFSFSSLNF PIPGPRGPIFEDAPNFDMAFKLFHGKDGIVPLSGRSDGRCNSLKQEPTPQFNPLAAKV ATISLSAFGGGGPFSFGPFSDKWKNQKKKSDTPNKQETSSQNGDSSNHDALGDEWLQT GNCPIAKSYRAVSRVLPLVATALQPPPGMKLRCPRAVVAARATLARTALVKNLRPQPL PAKVFVIALLGMAANVPLGVWKEHTEKFSLSWFAAVHAAVPFIAMFRKSVLIPKTSMA LTITASILGQVIGSRAERHRLKAVAEREKMAAQTAIDVAVAGYNDLSQVDYHCGREVP VKAGRPSSSSNNVCY" CDS complement(join(33934168..33934788,33935222..33935515, 33935640..33935780)) /locus_tag="TCM_016674" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046954t1" /codon_start=1 /product="Zinc finger B-box domain containing protein 1 isoform 1" /protein_id="EOY25321.1" /db_xref="Phytozome:POPTR_0001s01370.1" /db_xref="TAIR:AT5G45410.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SW23" /translation="MDFWFKGINEDTSECSFNERDIQRCPFLRNINKPTNFSFSSLNF PIPVQGPRGPIFEDAPNFDMAFKLFHGKDGIVPLSGRSDGRCNSLKQEPTPQFNPLAA KVATISLSAFGGGGPFSFGPFSDKWKNQKKKSDTPNKQETSSQNGDSSNHDALGDEWL QTGNCPIAKSYRAVSRVLPLVATALQPPPGMKLRCPRAVVAARATLARTALVKNLRPQ PLPAKVFVIALLGMAANVPLGVWKEHTEKFSLSWFAAVHAAVPFIAMFRKSVLIPKTS MALTITASILGQVIGSRAERHRLKAVAEREKMAAQTAIDVAVAGYNDLSQVDYHCGRE VPVKAGRPSSSSNNVCY" CDS complement(join(33934168..33934788,33935222..33935515, 33935640..33935780)) /locus_tag="TCM_016674" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046954t1" /codon_start=1 /product="Zinc finger B-box domain containing protein 1 isoform 1" /protein_id="EOY25322.1" /db_xref="Phytozome:POPTR_0001s01370.1" /db_xref="TAIR:AT5G45410.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SW23" /translation="MDFWFKGINEDTSECSFNERDIQRCPFLRNINKPTNFSFSSLNF PIPVQGPRGPIFEDAPNFDMAFKLFHGKDGIVPLSGRSDGRCNSLKQEPTPQFNPLAA KVATISLSAFGGGGPFSFGPFSDKWKNQKKKSDTPNKQETSSQNGDSSNHDALGDEWL QTGNCPIAKSYRAVSRVLPLVATALQPPPGMKLRCPRAVVAARATLARTALVKNLRPQ PLPAKVFVIALLGMAANVPLGVWKEHTEKFSLSWFAAVHAAVPFIAMFRKSVLIPKTS MALTITASILGQVIGSRAERHRLKAVAEREKMAAQTAIDVAVAGYNDLSQVDYHCGRE VPVKAGRPSSSSNNVCY" CDS complement(join(33934168..33934788,33935222..33935467)) /locus_tag="TCM_016674" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG046954t1" /codon_start=1 /product="Zinc finger B-box domain containing protein 1 isoform 4" /protein_id="EOY25324.1" /db_xref="Phytozome:POPTR_0001s01370.1" /db_xref="TAIR:AT4G25030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SW23" /translation="MAFKLFHGKDGIVPLSGRSDGRCNSLKQEPTPQFNPLAAKVATI SLSAFGGGGPFSFGPFSDKWKNQKKKSDTPNKQETSSQNGDSSNHDALGDEWLQTGNC PIAKSYRAVSRVLPLVATALQPPPGMKLRCPRAVVAARATLARTALVKNLRPQPLPAK VFVIALLGMAANVPLGVWKEHTEKFSLSWFAAVHAAVPFIAMFRKSVLIPKTSMALTI TASILGQVIGSRAERHRLKAVAEREKMAAQTAIDVAVAGYNDLSQVDYHCGREVPVKA GRPSSSSNNVCY" gene complement(33936856..33941237) /locus_tag="TCM_016675" /note="dbxref CacaoGD:Thecc1EG016675" mRNA complement(join(33936856..33940058,33940728..33941237)) /locus_tag="TCM_016675" /product="Replication factor A 1, rfa1, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G45400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037567t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10170.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11877t2" CDS complement(join(33937634..33940058,33940728..33941038)) /locus_tag="TCM_016675" /note="paralog of Thecc1EG037567t1" /codon_start=1 /product="Replication factor A 1, rfa1, putative" /protein_id="EOY25325.1" /db_xref="Phytozome:POPTR_0003s10170.1" /db_xref="TAIR:AT5G45400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S1L9" /translation="MGVNLTGGAVGRIINREVASEKDLKPVLQVIELKEVQTTSKNQP QQQQEPKKSERFRLLLSDGSLAQQGMLATNKNELVKSSKLQVGSIVQLTQYICNVIQD RMIVIIIELEVIIEKYDIIGKPVPAPKSSRPTEVPTDQPGTVMVQTNTFGGSSVGGSK ADKLNSAGTPLQQPRMNPLHGSSFPNQAEPVRYPAANSPPVCPKAEPSAGFPGSSPLS GPYGAQNQAEPVRYPAANSPPVYPKAEPSAGFPGSSPLSGPYGAQSTGFHNPRPAASR PLSTSNRQPIPAYQQPSPMYSNRGPVAKNDAPPRIIPISALNPYQGRWTIKARVTAKG ELRRYSNARGEGKVFSFDLLDSDGGEIRVTCFNTVVDQFFNQIEAGRVYMISRGTLKP AQKAFNHLNNDYEICLDSTSIIQPCYEDDNKIPRQQFHFRAISDVEGMENNNIVDIIG VVSFISPAASIMRKNGTETQKRTLHLKDMSGRSVELTLWGNFCNAEGQKLQFLCDSGE FPVLAVKAGRVSDFNGKAVGTISTSQLFINPDFPEAHRLKEWFVDEGRNTPSVSISRE TSSVGRTDNRKTISQIKDERLGTSEKPDWITVVATIAYIKLDNFCYIACPIMNGDRPC NKKVTNNGDGKWWCEKCDRSVDECDYRYIIQFQIQDHTGVTWVTAFQESGEDLMGVSA KDLYYLRYENQNDEKFMEITRQVMFNKYMFKLKVKEETFSDEQRVKSTVVKVEKVNFS SESRYLLDLIDKIKANDSSCFASKAEITTPNHGMDYTGIGNDISRHLAPTAGREYGLP AYQGGQYGNQYSGSRLRETAASMDVFCNSCGVTGHSSTNCPTFMNGPAQSMGRDCTGR ISSEASVGRTSDECYKCHQSGHWAKDCPRSGPSYGSTDFSSGRYGGVSRQQVGGF" mobile_element complement(33941651..33941987) /note="source:scaffold_4_CACTA_0482 4766 5097" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33941936..33942191) /note="source:CACAO_on_E545_scaffold_5 1 257" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 33942088..33942207 /note="source:scaffold_1_CACTA_0001 8389 8514" /mobile_element_type="transposon:TIR/CACTA" gene 33943322..33946442 /locus_tag="TCM_016676" /note="dbxref CacaoGD:Thecc1EG016676" mRNA join(33943322..33943747,33943953..33944083, 33944369..33944494,33944595..33944722,33945023..33945097, 33945682..33946320) /locus_tag="TCM_016676" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01320.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01320.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11604t00001" mRNA join(33943392..33943576,33943664..33943747, 33943953..33944083,33944369..33944494,33944595..33944722, 33945682..33946442) /locus_tag="TCM_016676" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01320.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01320.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2106t3_C1; inference alignment:Newbler:10:TSA:cgbaL_g11604t00001" CDS join(33943549..33943747,33943953..33944083, 33944369..33944494,33944595..33944722,33945023..33945097, 33945682..33945964) /locus_tag="TCM_016676" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25326.1" /db_xref="Phytozome:POPTR_0001s01320.1" /db_xref="TAIR:AT4G19140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U3Y8" /translation="MDSQEIPDNGNKGFLFMFFRIAFALLFPIFAFFFLSFLVGFVAV FIGELSIPNSITIPTQCKIVSSSVDIRSSKICELGLLNYKAKHVLYHFERSKFRCRYD YYWTSVFEVEYRDHSLGQTRLAFTEAPNEALPLSCRPNFGAAWLTKDKFKVNETYDCW YTSGISKVKLYNDGFFSCQAKDPSTIEMIKRYLMIEQYSGTSRTALSETWEERIRISE CRSSKIVYSWLSSKGRGIYWRWETIAGVVTGFSTSIITISFIRILQHMKSWLPQALNT VHIKRVCFLLVYVSVMGWLVSQYWRRLNIPLINVYNY" CDS join(33943549..33943576,33943664..33943747, 33943953..33944083,33944369..33944494,33944595..33944722, 33945682..33945964) /locus_tag="TCM_016676" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY25327.1" /db_xref="Phytozome:POPTR_0001s01320.1" /db_xref="TAIR:AT4G19140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U3Y8" /translation="MDSQEIPDNVGFVAVFIGELSIPNSITIPTQCKIVSSSVDIRSS KICELGLLNYKAKHVLYHFERSKFRCRYDYYWTSVFEVEYRDHSLGQTRLAFTEAPNE ALPLSCRPNFGAAWLTKDKFKVNETYDCWYTSGISKVKLYNDGFFSCQAKDPSTIEMI KRYLMISSKIVYSWLSSKGRGIYWRWETIAGVVTGFSTSIITISFIRILQHMKSWLPQ ALNTVHIKRVCFLLVYVSVMGWLVSQYWRRLNIPLINVYNY" gene complement(33946346..33950257) /locus_tag="TCM_016677" /note="dbxref CacaoGD:Thecc1EG016677" mRNA complement(join(33946346..33947095,33947361..33947489, 33947669..33947717,33947882..33947930,33948043..33948089, 33948259..33948929,33949077..33949129,33949215..33949263, 33949359..33949499,33949585..33949640,33949704..33950257)) /locus_tag="TCM_016677" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene13507" /inference="similar to AA sequence:Phytozome:GSVIVT01022787001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1788t2" CDS complement(join(33946972..33947095,33947361..33947489, 33947669..33947717,33947882..33947930,33948043..33948089, 33948259..33948929,33949077..33949129,33949215..33949263, 33949359..33949499,33949585..33949640,33949704..33950099)) /locus_tag="TCM_016677" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25328.1" /db_xref="Phytozome:GSVIVT01022787001" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZW6" /translation="MVNGGNEGNLAGDSFLKPGTIKQSFDSCQLLPSHTSSGEKSAME TEGRQFSDFYRNSSEELFLKSLMESSIGMPVPTMEMLGFKNLSQNFRADSEELFRSWL TNGEASNSNQGPYNLKLFYFVISSSRTFILNQGHNSSSIAHRTRQASRRLSTEMASLS CQQPGTSLQKKRSSDDLLLQNNSIGEETSGDVNQNSMRTAVEKGLQASNLYLAKAWFH SSQPMTRSRSSELRRRYAAMQNAQTSLGMEDALNSYGNGVNKMKVELSDPNGFNDIPM CEIPNQLGTFMSPSNSSSSTFNAPQTGNVDKVSSVVSMLKGTLERKKLSNQIEKEAGE DSSIMPNSTFNQGQGNLFHEIPGAFAEVSLGQVTNTGVVQVVQGPMDLDLEGFVNPTN TIQMSTVSREASQSESSAAAPVVSSGFDACDGPSNSSQTLSICESSKKQVGNGRSSEN GCKSKADFRERIIDNLKDDRKQRGGLVRYGSVTSAGSVDRADPTKKRRVERSRKMAEA KERNSTPAIPSDMQSVLKRCETLEKEVRSLKLNLSFMNRKDSEQTKQIEELQKQNEEL TDEKERLLEEIERIIADSGNM" gene complement(33952099..33957931) /locus_tag="TCM_016678" /note="dbxref CacaoGD:Thecc1EG016678" mRNA complement(join(33952099..33952817,33952929..33953025, 33953119..33953196,33953294..33953363,33953464..33953559, 33954263..33954399,33954480..33954658,33955448..33955625, 33956222..33956254,33956657..33956767,33956874..33957931)) /locus_tag="TCM_016678" /product="ATPase family associated with various cellular activities, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:28098.m000127" /inference="similar to AA sequence:Phytozome:POPTR_0014s17680.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11835t2" mRNA complement(join(33952315..33952817,33952929..33953025, 33953119..33953198,33953294..33953363,33953464..33953559, 33954263..33954399,33954480..33954658,33955448..33955625, 33956222..33956257,33956657..33956767,33956874..33957844)) /locus_tag="TCM_016678" /product="ATPase family associated with various cellular activities, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:28098.m000127" /inference="similar to AA sequence:Phytozome:POPTR_0014s17680.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11835t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11835t2" CDS complement(join(33952717..33952817,33952929..33953025, 33953119..33953196,33953294..33953363,33953464..33953559, 33954263..33954399,33954480..33954658,33955448..33955625, 33956222..33956254,33956657..33956767,33956874..33957728)) /locus_tag="TCM_016678" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ATPase family associated with various cellular activities, putative isoform 1" /protein_id="EOY25329.1" /db_xref="Phytozome:POPTR_0014s17680.1" /db_xref="TAIR:AT5G27740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IB37" /translation="MPSPATILRRSSPNPDLIITTQKSETLIPRSSRSSTCSSRPTKF SYWTSWSNINKLGDYINPRRLGNDSSKHSDLTEESLDAHNKLHGILSHRATISNYIFN HVDEKNHKCSPYYKGLIDLTLSINREKNISGAESPGRVSHTTTVFTTTSSTLSSFFVK VQEFSSSCFTCRKTGNQDPSPAAAPPTSVKTTFPKGMKSEKKEATDPPDPQLVDEVKP LRERVSEPSAPPTLTILPTKTVPSNDEKKEADTHKGNQKFIWADKYRPKALKDFICNK SEATRLQALVKYDLCDHVIFEGPPGVGKRTMIWAMLREAFGPDGLQTRDERKAFDLKG ESIGRIEVNVKESSQHVEVNLSDLKGYEKDVIVELMKETQTKTSKSNKAMSSYSDNCR VIILCEADKLSTDALLYIKWLLERYEGDNKVFFCCSDVSRLQPIRSICKLIRLLPPSK EEIVEVLEFIAKQEDIYLPTKLAEKMAESSKNNLRQAIRSFEACWHSSYPFKEDQVIL TGWEDDIANIAKNIVEERSPKQLYIIRGKLQILIEHDVSPDFIFKSLVEEVKKHMHEN LHTQVDGLYDEYNRDDESMIESEDEMSIKVIHPVRKNMRIFLRIEEFIARFMSWYNNQ LRMANAGNTPLAGEGTSCDC" CDS complement(join(33953178..33953198,33953294..33953363, 33953464..33953559,33954263..33954399,33954480..33954658, 33955448..33955625,33956222..33956257,33956657..33956767, 33956874..33957728)) /locus_tag="TCM_016678" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ATPase family associated with various cellular activities, putative isoform 2" /protein_id="EOY25330.1" /db_xref="Phytozome:POPTR_0014s17680.1" /db_xref="TAIR:AT5G27740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IB37" /translation="MPSPATILRRSSPNPDLIITTQKSETLIPRSSRSSTCSSRPTKF SYWTSWSNINKLGDYINPRRLGNDSSKHSDLTEESLDAHNKLHGILSHRATISNYIFN HVDEKNHKCSPYYKGLIDLTLSINREKNISGAESPGRVSHTTTVFTTTSSTLSSFFVK VQEFSSSCFTCRKTGNQDPSPAAAPPTSVKTTFPKGMKSEKKEATDPPDPQLVDEVKP LRERVSEPSAPPTLTILPTKTVPSNDEKKEADTHKGNQKFIWADKYRPKALKDFICNK SEATRLQALVKYDLCDHVIFEGPPGVGKRTMIWAMLREAFGPDGLQQTRDERKAFDLK GESIGRIEVNVKESSQHVEVNLSDLKGYEKDVIVELMKETQTKTSKSNKAMSSYSDNC RVIILCEADKLSTDALLYIKWLLERYEGDNKVFFCCSDVSRLQPIRSICKLIRLLPPS KEEIVEVLEFIAKQEDIYLPTKLAEKMAESSKNNLRQAIRSFEACWHSSYPFKEDQVI LTGWEDDIANIAKNIVEERSPKQLYIIRGKLQILIEHDVSPDFIFKSLWLKK" gene 33958032..33959053 /locus_tag="TCM_016679" /note="dbxref CacaoGD:Thecc1EG016679" mRNA join(33958032..33958669,33958744..33959053) /locus_tag="TCM_016679" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.48 coverage" CDS join(33958616..33958669,33958744..33958917) /locus_tag="TCM_016679" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25331.1" /translation="MGFAGPAGTIQASSDFLSEADFDAKSVAKAKTCSKFNTQTRLGN MEYEPYQPAQQFLARLLFSVIFLEKLHVKHN" gene 33960909..33965510 /locus_tag="TCM_016681" /note="dbxref CacaoGD:Thecc1EG016681" mRNA join(33960909..33961588,33962131..33962208, 33962430..33962793,33962968..33963080,33963272..33963436, 33963580..33963719,33964667..33964759,33964857..33965510) /locus_tag="TCM_016681" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19410.1" /inference="similar to AA sequence:ricco:29827.m002669" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:PASA:2:TSA:puevd3b016117t1a2; inference alignment:Newbler:10:TSA:cgbaB_g05120t00001" mRNA join(33961011..33961588,33961831..33961990, 33962131..33962208,33962430..33962793,33962968..33963080, 33963272..33963436,33963580..33963719,33964667..33964759, 33964857..33965169) /locus_tag="TCM_016681" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19410.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s19410.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05120t00001; inference alignment:Newbler:10:TSA:cgbaB_g05120t00001" CDS join(33961515..33961588,33961831..33961990, 33962131..33962208,33962430..33962793,33962968..33963080, 33963272..33963436,33963580..33963719,33964667..33964759, 33964857..33965016) /locus_tag="TCM_016681" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25332.1" /db_xref="Phytozome:POPTR_0001s19410.1" /db_xref="TAIR:AT4G19160.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JSG8" /translation="MLCTPYCVPAAAMASPTFPDHCFIRYDHHHHHDHKDLRRWRIRT TTAATSASASAYPLFSNQIQLTKDSSSRHKFYQEALKTARDKFTREISIQSKDKDISL AKALLYVAAEDEAFMAFNQEMDTRSLLNERRNVSSPSDTKEWDSVEQMPLGGKTISEW LSELDAIAKEVEAELVSRDIGCHLVEVLEAVNLVLFELRGFKRSPVLVDSKHSYLHSI LSSGCGSAILLSIIYIEVCRRLGLTIVGSRVGGDFLIWPQTGYPEELFKVTSGHSLFA IVNGRCVEDPRSMASDLTGTSLLGLEIATNRDIIGIALANLIRLHWKRASRSNHGLML TSPLRHVHNADEKPNKIDKSNVPLLRPQDLRLAIMASERLLILQPHNWALRRDHGMML YYNREYGKAVQELSICMAFAPEEEAEILEPFVEKLHLMRLELSWKSLGHAGRLAVP" CDS join(33962466..33962793,33962968..33963080, 33963272..33963436,33963580..33963719,33964667..33964759, 33964857..33965016) /locus_tag="TCM_016681" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29827.m002669" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY25333.1" /db_xref="TAIR:AT4G19160.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JSG8" /translation="MAFNQEMDTRSLLNERRNVSSPSDTKEWDSVEQMPLGGKTISEW LSELDAIAKEVEAELVSRDIGCHLVEVLEAVNLVLFELRGFKRSPVLVDSKHSYLHSI LSSGCGSAILLSIIYIEVCRRLGLTIVGSRVGGDFLIWPQTGYPEELFKVTSGHSLFA IVNGRCVEDPRSMASDLTGTSLLGLEIATNRDIIGIALANLIRLHWKRASRSNHGLML TSPLRHVHNADEKPNKIDKSNVPLLRPQDLRLAIMASERLLILQPHNWALRRDHGMML YYNREYGKAVQELSICMAFAPEEEAEILEPFVEKLHLMRLELSWKSLGHAGRLAVP" gene 33965540..33970085 /locus_tag="TCM_016682" /note="dbxref CacaoGD:Thecc1EG016682" mRNA join(33965540..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967745..33967860, 33968662..33968838,33969315..33969657,33969745..33969781, 33969887..33970001) /locus_tag="TCM_016682" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29827.m002671" /inference="similar to AA sequence:Phytozome:GSVIVT01020479001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc195t8" mRNA join(33965751..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967745..33967860, 33968662..33968838,33969315..33970003) /locus_tag="TCM_016682" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29827.m002671" /inference="similar to AA sequence:Phytozome:GSVIVT01020479001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc195t10; alternateUTRof:Thecc1EG016682t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc195t8" mRNA join(33965751..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967745..33967860, 33968662..33968838,33969357..33970003) /locus_tag="TCM_016682" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29827.m002671" /inference="similar to AA sequence:Phytozome:GSVIVT01020479001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc195t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc195t8" mRNA join(33965751..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967745..33967860, 33968662..33968838,33969369..33970003) /locus_tag="TCM_016682" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:29827.m002671" /inference="similar to AA sequence:Phytozome:GSVIVT01020479001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc195t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc195t8" mRNA join(33965751..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967745..33967860, 33968662..33968838,33969403..33969657,33969745..33969781, 33969887..33970003) /locus_tag="TCM_016682" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29827.m002671" /inference="similar to AA sequence:Phytozome:GSVIVT01020479001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc195t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc195t8" mRNA join(33965751..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967745..33967861, 33968816..33969335) /locus_tag="TCM_016682" /product="Uncharacterized protein isoform 7" /inference="alignment:exonerate- protein:2:ricco:29827.m002671" /inference="similar to AA sequence:Phytozome:GSVIVT01020479001" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc115t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc195t8" mRNA join(33965974..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967745..33967861, 33969315..33970085) /locus_tag="TCM_016682" /product="Uncharacterized protein isoform 6" /inference="alignment:exonerate- protein:2:ricco:29827.m002671" /inference="similar to AA sequence:Phytozome:GSVIVT01020479001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc115t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc195t8" mRNA join(33966002..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967758..33967860, 33968662..33968692) /locus_tag="TCM_016682" /product="Uncharacterized protein isoform 8" /inference="alignment:exonerate- protein:2:ricco:29827.m002671" /inference="similar to AA sequence:Phytozome:GSVIVT01020479001" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11889t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc195t8" CDS join(33966135..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967745..33967860, 33968662..33968838,33969315..33969599) /locus_tag="TCM_016682" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25334.1" /db_xref="Phytozome:GSVIVT01020479001" /db_xref="TAIR:AT3G45890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7X6P3" /translation="MACACGYCCRPLFLSSPFAFPSPSTPSSYAPPTTPFLFSHLAIC ASFKPVIAAATTKSLPFPLLSHGHGGGCDGNNNNNNDGPFGSDSWRWNDDSSSSHSHP FLLFLSSFVACFCPSQLSSALARTNEDSQEDDVVWEVKGSKWTKLIPDFSEDAFVASN GIVNLTKSLSLSTVWRQCRDIVMRLLLPEGFPDSVTSDYLDYSLWRGVQGVASQISGV LATQALLYAVGLGKGAIPTAAAINWVLKDGIGYLSKIMLSKYGRHFDVNPKGWRLFAD LLENAAFGLEMLTPAFPHLFVPIGAAAGAGRSAAALIQAATRSCFYAGFAAQRNFAEV IAKGEAQGMVSKSIGIVLGIALANCVGSSTSLALASFGVVTWVHMYCNLKSYQSIQLR TLNSYRASLVFSEYLLSGQAPSIKEVNDEEPLFPAVPFLNLLSANRERSVVLSSEAKQ AAADIERRLQLGSKLSDIVNNKEDALALFSLYKDEGYILTEHEGKFCVVLKESSLPQD MLKSLFQVNYLYWLERNAGIEASGASTDCRPGGRLQISVEYVQREFNHVKIDSESVGW VTDGLIARPLPNRIRPGHRDASTAS" CDS join(33966135..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967745..33967860, 33968662..33968838,33969315..33969599) /locus_tag="TCM_016682" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25336.1" /db_xref="Phytozome:GSVIVT01020479001" /db_xref="TAIR:AT3G45890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7X6P3" /translation="MACACGYCCRPLFLSSPFAFPSPSTPSSYAPPTTPFLFSHLAIC ASFKPVIAAATTKSLPFPLLSHGHGGGCDGNNNNNNDGPFGSDSWRWNDDSSSSHSHP FLLFLSSFVACFCPSQLSSALARTNEDSQEDDVVWEVKGSKWTKLIPDFSEDAFVASN GIVNLTKSLSLSTVWRQCRDIVMRLLLPEGFPDSVTSDYLDYSLWRGVQGVASQISGV LATQALLYAVGLGKGAIPTAAAINWVLKDGIGYLSKIMLSKYGRHFDVNPKGWRLFAD LLENAAFGLEMLTPAFPHLFVPIGAAAGAGRSAAALIQAATRSCFYAGFAAQRNFAEV IAKGEAQGMVSKSIGIVLGIALANCVGSSTSLALASFGVVTWVHMYCNLKSYQSIQLR TLNSYRASLVFSEYLLSGQAPSIKEVNDEEPLFPAVPFLNLLSANRERSVVLSSEAKQ AAADIERRLQLGSKLSDIVNNKEDALALFSLYKDEGYILTEHEGKFCVVLKESSLPQD MLKSLFQVNYLYWLERNAGIEASGASTDCRPGGRLQISVEYVQREFNHVKIDSESVGW VTDGLIARPLPNRIRPGHRDASTAS" CDS join(33966135..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967745..33967860, 33968662..33968838,33969357..33969599) /locus_tag="TCM_016682" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY25337.1" /db_xref="Phytozome:GSVIVT01020479001" /db_xref="TAIR:AT3G45890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7X6P3" /translation="MACACGYCCRPLFLSSPFAFPSPSTPSSYAPPTTPFLFSHLAIC ASFKPVIAAATTKSLPFPLLSHGHGGGCDGNNNNNNDGPFGSDSWRWNDDSSSSHSHP FLLFLSSFVACFCPSQLSSALARTNEDSQEDDVVWEVKGSKWTKLIPDFSEDAFVASN GIVNLTKSLSLSTVWRQCRDIVMRLLLPEGFPDSVTSDYLDYSLWRGVQGVASQISGV LATQALLYAVGLGKGAIPTAAAINWVLKDGIGYLSKIMLSKYGRHFDVNPKGWRLFAD LLENAAFGLEMLTPAFPHLFVPIGAAAGAGRSAAALIQAATRSCFYAGFAAQRNFAEV IAKGEAQGMVSKSIGIVLGIALANCVGSSTSLALASFGVVTWVHMYCNLKSYQSIQLR TLNSYRASLVFSEYLLSGQAPSIKEVNDEEPLFPAVPFLNLLSANRERSVVLSSEAKQ AAADIERRLQLGSKLSDIVNNKEDALALFSLYKDEGYILTEHEGKFCSLFQVNYLYWL ERNAGIEASGASTDCRPGGRLQISVEYVQREFNHVKIDSESVGWVTDGLIARPLPNRI RPGHRDASTAS" CDS join(33966135..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967745..33967860, 33968662..33968838,33969369..33969599) /locus_tag="TCM_016682" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY25338.1" /db_xref="Phytozome:GSVIVT01020479001" /db_xref="TAIR:AT3G45890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7X6P3" /translation="MACACGYCCRPLFLSSPFAFPSPSTPSSYAPPTTPFLFSHLAIC ASFKPVIAAATTKSLPFPLLSHGHGGGCDGNNNNNNDGPFGSDSWRWNDDSSSSHSHP FLLFLSSFVACFCPSQLSSALARTNEDSQEDDVVWEVKGSKWTKLIPDFSEDAFVASN GIVNLTKSLSLSTVWRQCRDIVMRLLLPEGFPDSVTSDYLDYSLWRGVQGVASQISGV LATQALLYAVGLGKGAIPTAAAINWVLKDGIGYLSKIMLSKYGRHFDVNPKGWRLFAD LLENAAFGLEMLTPAFPHLFVPIGAAAGAGRSAAALIQAATRSCFYAGFAAQRNFAEV IAKGEAQGMVSKSIGIVLGIALANCVGSSTSLALASFGVVTWVHMYCNLKSYQSIQLR TLNSYRASLVFSEYLLSGQAPSIKEVNDEEPLFPAVPFLNLLSANRERSVVLSSEAKQ AAADIERRLQLGSKLSDIVNNKEDALALFSLYKDEGYILTEHEGKFCVNYLYWLERNA GIEASGASTDCRPGGRLQISVEYVQREFNHVKIDSESVGWVTDGLIARPLPNRIRPGH RDASTAS" CDS join(33966135..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967745..33967860, 33968662..33968838,33969403..33969525) /locus_tag="TCM_016682" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY25335.1" /db_xref="Phytozome:GSVIVT01020479001" /db_xref="TAIR:AT3G45890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7X6P3" /translation="MACACGYCCRPLFLSSPFAFPSPSTPSSYAPPTTPFLFSHLAIC ASFKPVIAAATTKSLPFPLLSHGHGGGCDGNNNNNNDGPFGSDSWRWNDDSSSSHSHP FLLFLSSFVACFCPSQLSSALARTNEDSQEDDVVWEVKGSKWTKLIPDFSEDAFVASN GIVNLTKSLSLSTVWRQCRDIVMRLLLPEGFPDSVTSDYLDYSLWRGVQGVASQISGV LATQALLYAVGLGKGAIPTAAAINWVLKDGIGYLSKIMLSKYGRHFDVNPKGWRLFAD LLENAAFGLEMLTPAFPHLFVPIGAAAGAGRSAAALIQAATRSCFYAGFAAQRNFAEV IAKGEAQGMVSKSIGIVLGIALANCVGSSTSLALASFGVVTWVHMYCNLKSYQSIQLR TLNSYRASLVFSEYLLSGQAPSIKEVNDEEPLFPAVPFLNLLSANRERSVVLSSEAKQ AAADIERRLQLGSKLSDIVNNKEDALALFSLYKDEGYILTEHEGKFCELKQAVPLPTA DPGEGCKYLWSTCKGNSTMLKLTVNQWDG" CDS join(33966135..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967745..33967861, 33969315..33969325) /locus_tag="TCM_016682" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY25339.1" /db_xref="Phytozome:GSVIVT01020479001" /db_xref="TAIR:AT3G45890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7X6P3" /translation="MACACGYCCRPLFLSSPFAFPSPSTPSSYAPPTTPFLFSHLAIC ASFKPVIAAATTKSLPFPLLSHGHGGGCDGNNNNNNDGPFGSDSWRWNDDSSSSHSHP FLLFLSSFVACFCPSQLSSALARTNEDSQEDDVVWEVKGSKWTKLIPDFSEDAFVASN GIVNLTKSLSLSTVWRQCRDIVMRLLLPEGFPDSVTSDYLDYSLWRGVQGVASQISGV LATQALLYAVGLGKGAIPTAAAINWVLKDGIGYLSKIMLSKYGRHFDVNPKGWRLFAD LLENAAFGLEMLTPAFPHLFVPIGAAAGAGRSAAALIQAATRSCFYAGFAAQRNFAEV IAKGEAQGMVSKSIGIVLGIALANCVGSSTSLALASFGVVTWVHMYCNLKSYQSIQLR TLNSYRASLVFSEYLLSGQAPSIKEVNDEEPLFPAVPFLNLLSANRGSA" CDS join(33966135..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967745..33967861, 33968816..33968931) /locus_tag="TCM_016682" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 7" /protein_id="EOY25340.1" /db_xref="Phytozome:GSVIVT01020479001" /db_xref="TAIR:AT3G45890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7X6P3" /translation="MACACGYCCRPLFLSSPFAFPSPSTPSSYAPPTTPFLFSHLAIC ASFKPVIAAATTKSLPFPLLSHGHGGGCDGNNNNNNDGPFGSDSWRWNDDSSSSHSHP FLLFLSSFVACFCPSQLSSALARTNEDSQEDDVVWEVKGSKWTKLIPDFSEDAFVASN GIVNLTKSLSLSTVWRQCRDIVMRLLLPEGFPDSVTSDYLDYSLWRGVQGVASQISGV LATQALLYAVGLGKGAIPTAAAINWVLKDGIGYLSKIMLSKYGRHFDVNPKGWRLFAD LLENAAFGLEMLTPAFPHLFVPIGAAAGAGRSAAALIQAATRSCFYAGFAAQRNFAEV IAKGEAQGMVSKSIGIVLGIALANCVGSSTSLALASFGVVTWVHMYCNLKSYQSIQLR TLNSYRASLVFSEYLLSGQAPSIKEVNDEEPLFPAVPFLNLLSANRAEHEGKFCVSAL LLWILVSIPSLSQTHRLHPLLILGRT" CDS join(33966135..33966800,33966889..33967164, 33967239..33967295,33967462..33967660,33967758..33967771) /locus_tag="TCM_016682" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 8" /protein_id="EOY25341.1" /db_xref="Phytozome:GSVIVT01020479001" /db_xref="TAIR:AT3G45890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7X6P3" /translation="MACACGYCCRPLFLSSPFAFPSPSTPSSYAPPTTPFLFSHLAIC ASFKPVIAAATTKSLPFPLLSHGHGGGCDGNNNNNNDGPFGSDSWRWNDDSSSSHSHP FLLFLSSFVACFCPSQLSSALARTNEDSQEDDVVWEVKGSKWTKLIPDFSEDAFVASN GIVNLTKSLSLSTVWRQCRDIVMRLLLPEGFPDSVTSDYLDYSLWRGVQGVASQISGV LATQALLYAVGLGKGAIPTAAAINWVLKDGIGYLSKIMLSKYGRHFDVNPKGWRLFAD LLENAAFGLEMLTPAFPHLFVPIGAAAGAGRSAAALIQAATRSCFYAGFAAQRNFAEV IAKGEAQGMVSKSIGIVLGIALANCVGSSTSLALASFGVVTWVHMYCNLKSYQSIQLR TLNSYRAMNIS" mobile_element 33970125..33970183 /note="source:CACAO_Again_on_S_E63_scaffold_2 2 61" /mobile_element_type="transposon:TIR/hAT" gene 33970457..33974518 /locus_tag="TCM_016683" /note="dbxref CacaoGD:Thecc1EG016683" mRNA join(33970457..33970831,33970944..33971003, 33971117..33971218,33971430..33971506,33971990..33972113, 33972559..33972623,33973081..33973150,33973680..33973755, 33973902..33973995,33974178..33974518) /locus_tag="TCM_016683" /product="Subunit B" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035604001" /inference="similar to AA sequence:Phytozome:GSVIVT01035604001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10399t1" CDS join(33970780..33970831,33970944..33971003, 33971117..33971218,33971430..33971506,33971990..33972113, 33972559..33972623,33973081..33973150,33973680..33973755, 33973902..33973995,33974178..33974300) /locus_tag="TCM_016683" /codon_start=1 /product="Subunit B" /protein_id="EOY25342.1" /db_xref="Phytozome:GSVIVT01035604001" /db_xref="TAIR:AT4G20325.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MRG8" /translation="MGCWWEGVDESRLLIAPDPGSNGDGSARLISLRHPKSGVTTSYL LSNRLLQELHWFKQSYGSWFLGDYVSEDGSLYTATPIDPVFIMLPIFEEARMKKVDDP GKFRQLDEILFINDYPGYRHLFSIAENCMQVVCEIKEIGSSKFFRLDDTKVLAWLNYK VCQLKQTLPALDQNYAARDEKDTSADAISIIGEYLKHEPWLKLLSNHFKLNLLEATRI ASDFEACSNAIESPMGASNPSQGKTRGEKKTARNQKQAKKAKIETESRNIKEMFSRAS RRRN" gene complement(33974745..33979697) /locus_tag="TCM_016684" /note="dbxref CacaoGD:Thecc1EG016684" mRNA complement(join(33974745..33977467,33977757..33977828, 33979135..33979697)) /locus_tag="TCM_016684" /product="Nine-cis-epoxycarotenoid dioxygenase 4" /inference="alignment:exonerate- protein:2:ricco:29827.m002661" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016694t1" /inference="similar to AA sequence:ricco:29827.m002661" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc3576t8" CDS complement(join(33975560..33977467,33977757..33977828, 33979135..33979365)) /locus_tag="TCM_016684" /note="dbxref ricco:29827.m002661; paralog of Thecc1EG016694t1" /codon_start=1 /product="Nine-cis-epoxycarotenoid dioxygenase 4" /protein_id="EOY25343.1" /db_xref="TAIR:AT4G19170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2E7V5" /translation="MSTLGMIRQHGKRGHISWREINVNIELEHKISKQIKGLSNLSFE CLLMACDSESGKKALSVDSTIAFPVVLYQGQWMIANAVKKAKESKWLASHHQGYDDQI PIVAHSISDFLALLLPPGCPLLLTNQGNMDAFSSSFLSPLLPLKLISPAVTTPRSIST PHVNVSSVRIEERPPASIPRTTTTTTTKAPPQPPKTQPPPPASNTLPKRIASPSVGAK KRVEPKLSTFIFNTFDNIINNFIDPPIRPSVDPRHVLSHNFAPVDELPPTECEVIQGS LPPCLDGAYIRNGPNPQYLPRGPYHLFDGDGMLHSIRISKGQATLCSRYVKTYKYSIE NEMGSPVLPNVFSGFNGLTAAATRGALSAVRVLTGEFNPANGIGLANTSLALFGNRLY ALGESDLPYSIRLTPNGDIETLGRHDFDGKLFMSMTAHPKTDTDTGEAFAFRYGPMPP FLTYFYFDANGNKQPDVPIFSMSRPSFLHDFAITKKYAIFADIQIGMNPMEMIFGGGS PVGTDPAKVPRIGVIPRYAKDESEIRWFDIPGFNLIHAINAWDEDDGNAIVMLAPNIL SVEHTLERMDLVHALVEKVRIDLRTGLVTRHPLSTRNLDFAVLNPAYLAKKNKYVYAA VGDPMPKISGVVKLDVSRGDRQECTVASRMYGPGCFGGEPFFVAKEPGNPEADEDDGY VVSYVHNENTGESRFLVMDAKSPNLDIVAAAKLPRRVPYGFHGLFVRESDINKL" mobile_element 33979479..33979799 /note="source:CACAO_M_E22962_F270_scaffold_3 1 321" /mobile_element_type="retrotransposon:LTR/Copia" gene 33980392..33982849 /locus_tag="TCM_016685" /note="dbxref CacaoGD:Thecc1EG016685" mRNA 33980392..33982849 /locus_tag="TCM_016685" /product="Nine-cis-epoxycarotenoid dioxygenase 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036862001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016684t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s12320.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11882t1" CDS 33980962..33982623 /locus_tag="TCM_016685" /note="paralog of Thecc1EG016684t1" /codon_start=1 /product="Nine-cis-epoxycarotenoid dioxygenase 4" /protein_id="EOY25344.1" /db_xref="Phytozome:POPTR_0019s12320.1" /db_xref="TAIR:AT4G19170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2E7V5" /translation="MDALSSTFIPKSLAPSNATAISTPIVSQPPQLYIFSVGIQGKQL NSSATTSKLSNTASPATPLSPLKNIMAPSTAITLIFNAVRDTLENFIYPDLSPSLDPR LVLAGNFSPVDELPPTECEVIQGTLPPCLDGAYIRNGPNPRYLPRGPYHLFDGDGMVH CVRVSKGRATLCSRYVKTYKYNAEREAGFPIVPSFLSSFNGLTSSATHFTLYAARILT GQYNPAKGIGLANTSLALFGNRLYALGESDLPYALRLTSNGDIETLGRHDFDGKLFRS MTAHPKLDPDTGETFAFRYDPIFRPFLTYFYFDPNGIKQPDVPIFSMVTPSFVHDFAI TKNYAIFADIQIGINPMKIILGSGSPVSSDLTKVPRIGIIRRYSKDESEMKWFDAPGF NPIHVINAWDEDGGNAIVMVAPNILSVEHTLERMDLVHALVEKVRLDLKTRLVTRQPI STRNLDFAVINPAYVANKTKYVYAAVGDPMPKISGVVKLDVSKGELEECTVGSRMYGA GCYGGEPFFVAKEPGNPEAAEDDGYVLPFVHNENTEESSLLVMDA" gene complement(33982925..33988077) /locus_tag="TCM_016686" /note="dbxref CacaoGD:Thecc1EG016686" mRNA complement(join(33982925..33983790,33984200..33984522, 33985248..33987493,33987849..33988061)) /locus_tag="TCM_016686" /product="GDA1/CD39 nucleoside phosphatase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24490.1" /inference="similar to AA sequence:ricco:29405.m000154" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1461t4; alternateUTRof:Thecc1EG016686t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1462t2" mRNA complement(join(33982926..33983258,33984200..33984522, 33985248..33987493,33987849..33988077)) /locus_tag="TCM_016686" /product="GDA1/CD39 nucleoside phosphatase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24490.1" /inference="similar to AA sequence:ricco:29405.m000154" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b016122t1a2; alternateUTRof:Thecc1EG016686t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1462t2" mRNA complement(join(33982926..33983258,33983590..33983790, 33984200..33984522,33985248..33987493,33987849..33988077)) /locus_tag="TCM_016686" /product="GDA1/CD39 nucleoside phosphatase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24490.1" /inference="similar to AA sequence:ricco:29405.m000154" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1462t2" CDS complement(join(33984221..33984522,33985248..33987258)) /locus_tag="TCM_016686" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29405.m000154" /codon_start=1 /product="GDA1/CD39 nucleoside phosphatase family protein isoform 1" /protein_id="EOY25345.1" /db_xref="TAIR:AT4G19180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JSH1" /translation="MVFSRIAETISGASNLLSATQSSAASYMSPALSLQADKNAAHGF GFVNSGHKNNLRLSSSLQDFSSYHRLDPEAADLISEIDKSMTYTRPPLQRENAGSSFS KERGLPGGTPFLRRKWVRLIIVSLCLLLFIFLTYMVCMYIYSNWSKGASKFYVVLDCG STGTRVYVYQASIDHKNDGSLPIVMKSLTEGLSRRPSSQSGRAYDRMETEPGFHKLVH DKSGLKAAINPLISWAEKQIPEHAHKTTSLFLYATAGVRRLPSADSKWLLENAWLILK NSPFLCRREWVRIISGTEEAYFGWTALNYRTGMLGATPKRKTFGALDLGGSSLQVTFE NENHQHNETNLNLRIGVVTHHLSAYSLSGYGLNDAFDKSVVHLLKRLPDGSNTNLVNG KIEIKHPCLHSGYNEQYICSQCASKDQENGSPVVGGKILDKGGKSGIPVQLIGAPNWE QCSAIAKVAVNLSEWSNLYPGIDCDLQPCALSDSLPRPNGQFYALSGFFVVYRFFNLS SDAALDDVLEKGRDFCEKTWEVAKNSVAPQPFIEQYCFRAPYIVSLLREGLHITDSQL VIGSGSITWTKGVALLAAGKSFSSRLRLRGYQILQMKIDPIILIVILFMSLILLVCAL SCVSNWMPRFFRRPYLPLFRHNSAASTSVLNIPSPFRFKRWSPINSGDGRVKMPLSPT VSGSQQTPFGLGHSLGSSIQLTESSLYPSTSSVSHSYSSSSLGQMQFDSSSMGSFWSP HRSQMRLQSRRSQSREDLNSSLAETQMVKV" CDS complement(join(33984221..33984522,33985248..33987258)) /locus_tag="TCM_016686" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29405.m000154" /codon_start=1 /product="GDA1/CD39 nucleoside phosphatase family protein isoform 1" /protein_id="EOY25346.1" /db_xref="TAIR:AT4G19180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JSH1" /translation="MVFSRIAETISGASNLLSATQSSAASYMSPALSLQADKNAAHGF GFVNSGHKNNLRLSSSLQDFSSYHRLDPEAADLISEIDKSMTYTRPPLQRENAGSSFS KERGLPGGTPFLRRKWVRLIIVSLCLLLFIFLTYMVCMYIYSNWSKGASKFYVVLDCG STGTRVYVYQASIDHKNDGSLPIVMKSLTEGLSRRPSSQSGRAYDRMETEPGFHKLVH DKSGLKAAINPLISWAEKQIPEHAHKTTSLFLYATAGVRRLPSADSKWLLENAWLILK NSPFLCRREWVRIISGTEEAYFGWTALNYRTGMLGATPKRKTFGALDLGGSSLQVTFE NENHQHNETNLNLRIGVVTHHLSAYSLSGYGLNDAFDKSVVHLLKRLPDGSNTNLVNG KIEIKHPCLHSGYNEQYICSQCASKDQENGSPVVGGKILDKGGKSGIPVQLIGAPNWE QCSAIAKVAVNLSEWSNLYPGIDCDLQPCALSDSLPRPNGQFYALSGFFVVYRFFNLS SDAALDDVLEKGRDFCEKTWEVAKNSVAPQPFIEQYCFRAPYIVSLLREGLHITDSQL VIGSGSITWTKGVALLAAGKSFSSRLRLRGYQILQMKIDPIILIVILFMSLILLVCAL SCVSNWMPRFFRRPYLPLFRHNSAASTSVLNIPSPFRFKRWSPINSGDGRVKMPLSPT VSGSQQTPFGLGHSLGSSIQLTESSLYPSTSSVSHSYSSSSLGQMQFDSSSMGSFWSP HRSQMRLQSRRSQSREDLNSSLAETQMVKV" CDS complement(join(33984221..33984522,33985248..33987258)) /locus_tag="TCM_016686" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29405.m000154" /codon_start=1 /product="GDA1/CD39 nucleoside phosphatase family protein isoform 1" /protein_id="EOY25347.1" /db_xref="TAIR:AT4G19180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JSH1" /translation="MVFSRIAETISGASNLLSATQSSAASYMSPALSLQADKNAAHGF GFVNSGHKNNLRLSSSLQDFSSYHRLDPEAADLISEIDKSMTYTRPPLQRENAGSSFS KERGLPGGTPFLRRKWVRLIIVSLCLLLFIFLTYMVCMYIYSNWSKGASKFYVVLDCG STGTRVYVYQASIDHKNDGSLPIVMKSLTEGLSRRPSSQSGRAYDRMETEPGFHKLVH DKSGLKAAINPLISWAEKQIPEHAHKTTSLFLYATAGVRRLPSADSKWLLENAWLILK NSPFLCRREWVRIISGTEEAYFGWTALNYRTGMLGATPKRKTFGALDLGGSSLQVTFE NENHQHNETNLNLRIGVVTHHLSAYSLSGYGLNDAFDKSVVHLLKRLPDGSNTNLVNG KIEIKHPCLHSGYNEQYICSQCASKDQENGSPVVGGKILDKGGKSGIPVQLIGAPNWE QCSAIAKVAVNLSEWSNLYPGIDCDLQPCALSDSLPRPNGQFYALSGFFVVYRFFNLS SDAALDDVLEKGRDFCEKTWEVAKNSVAPQPFIEQYCFRAPYIVSLLREGLHITDSQL VIGSGSITWTKGVALLAAGKSFSSRLRLRGYQILQMKIDPIILIVILFMSLILLVCAL SCVSNWMPRFFRRPYLPLFRHNSAASTSVLNIPSPFRFKRWSPINSGDGRVKMPLSPT VSGSQQTPFGLGHSLGSSIQLTESSLYPSTSSVSHSYSSSSLGQMQFDSSSMGSFWSP HRSQMRLQSRRSQSREDLNSSLAETQMVKV" gene complement(33988467..33992669) /locus_tag="TCM_016687" /note="dbxref CacaoGD:Thecc1EG016687" mRNA complement(join(33988467..33989122,33989269..33989420, 33990311..33990466,33990959..33991244,33991375..33991491, 33991607..33991669,33992180..33992669)) /locus_tag="TCM_016687" /product="Nodulin MtN21 /EamA-like transporter family protein" /inference="alignment:exonerate- protein:2:ricco:29827.m002644" /inference="similar to AA sequence:ricco:29827.m002644" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05984t00001" CDS complement(join(33988912..33989122,33989269..33989420, 33990311..33990466,33990959..33991244,33991375..33991491, 33991607..33991669,33992180..33992379)) /locus_tag="TCM_016687" /note="dbxref ricco:29827.m002644" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein" /protein_id="EOY25348.1" /db_xref="TAIR:AT4G19185.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5PP32" /translation="MAGMNGGSEREAWRAHASMALVQLINGGYHVITKVALNVGVNQL VFCVFRDLLALSILAPVAYVREKRIRPPMTKRLLLSFFFLGLTGIFGNQLLFLIGLSY TNPTYAAAIQPSIPVFTFLLAVMMGTERVNLLKTEGQAKVGGTLICVSGAILMVLFRG PALLGHKDADFSAHNDISARGQPEPAGWLMSSFLEYGLEHWHIGVLCLIGNCMCMAAF LAIQAPVLAKYPANISVTAFSYFFGAVLMVATAFLMTNESTDWSLTQSELFAVLYAGI VASALNYGMLTWSNKILGPALVALYNPLQPAASAFLSRIFLGSPIYLGSVIGGFLIIA GLYMVTWASYREKHTAVGIVPQVVRSSEPLIHKDASVNKNPYQRGHIFSGSSILLQKP SD" gene complement(33993467..33998163) /locus_tag="TCM_016688" /note="dbxref CacaoGD:Thecc1EG016688" mRNA complement(join(33993467..33994619,33994758..33994904, 33995212..33995496,33995585..33995848,33995973..33996119, 33996218..33996341,33996685..33996752,33997012..33997119, 33997218..33997365,33997476..33998163)) /locus_tag="TCM_016688" /product="Component of oligomeric golgi complex isoform 1" /inference="alignment:exonerate- protein:2:ricco:29827.m002658" /inference="similar to AA sequence:ricco:29827.m002658" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10409t2" mRNA complement(join(33993692..33994619,33994758..33994904, 33995212..33995496,33995585..33995848,33995973..33996119, 33996218..33996341,33996682..33996752,33997012..33997119, 33997218..33997365,33997476..33997826)) /locus_tag="TCM_016688" /product="Component of oligomeric golgi complex isoform 4" /inference="alignment:exonerate- protein:2:ricco:29827.m002658" /inference="similar to AA sequence:ricco:29827.m002658" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11921t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10409t2" mRNA complement(join(33993692..33994619,33994758..33994904, 33995212..33995496,33995585..33995848,33995973..33996119, 33996218..33996341,33996685..33996755,33997012..33997119, 33997218..33997365,33997476..33997826)) /locus_tag="TCM_016688" /product="Component of oligomeric golgi complex isoform 3" /inference="alignment:exonerate- protein:2:ricco:29827.m002658" /inference="similar to AA sequence:ricco:29827.m002658" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11921t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10409t2" mRNA complement(join(<33994028..33994057,33994234..33994619, 33994758..33994904,33995212..33995496,33995585..33995848, 33995973..33996119,33996218..33996341,33996685..33996752, 33997012..33997119,33997218..33997365, 33997476..>33997766)) /locus_tag="TCM_016688" /product="Component of oligomeric golgi complex isoform 2" /inference="alignment:exonerate- protein:2:ricco:29827.m002658" /inference="similar to AA sequence:ricco:29827.m002658" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc103t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10409t2" CDS complement(join(<33994030..33994057,33994234..33994619, 33994758..33994904,33995212..33995496,33995585..33995848, 33995973..33996119,33996218..33996341,33996685..33996752, 33997012..33997119,33997218..33997365, 33997476..>33997765)) /locus_tag="TCM_016688" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29827.m002658" /codon_start=1 /product="Component of oligomeric golgi complex isoform 2" /protein_id="EOY25350.1" /db_xref="TAIR:AT1G31780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NMI3" /translation="EEKRSKMGTVGLAPGLSRKLKKVLECRTDSPEVVASLNTLSTFY TENTPQARRNLRSTIEKRSLQINLDFLRASQAAQLALDRVEDEVNSLADCCDRIAKAL NSCSASTADIISTTERLKQELDVTTQKQEIASCFLRDYQLSPEEINALRDEELNENFF KALSHVQEIHANCKILLSTHHQRAGLELMDMMAMYQEGAYERLCRWVQAECRKLGDTD NPEVSELLRTAVRCLKERPVLFKYCAEEVANMRHNALFRRFISALTRGGPGGMPRPIE VHAHDPLRYVGDMLGWLHQALASERELVLALLDPDAVVDTGSTANRFSKNVENDSGKI EADLTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRET ALCNTLWALKDAAQKTFFEILKGRGEKLLRYPPLVAVDLSPPPAVREGVSVLLEIIET YNSMMVPASGKKPAFDPVISALLDPIIQMCEQAAEAQKSKGAGHTSRSRRMSSDSGQL SKSAVDAILSNNNSSKFSQNSETPSKIFLINCLCAIQQPLLGHEVAAEYAKKLGMMID NHVRVLVEKEVDAILSRCGLSIKMHHFHNSLNKDATDGAPLAELEDTTPASLSECLKA FFGFILGSESSLPEFEQMQVPKLRSEAGIQVAKGNVKNQRV" CDS complement(join(33994107..33994619,33994758..33994904, 33995212..33995496,33995585..33995848,33995973..33996119, 33996218..33996341,33996685..33996752,33997012..33997119, 33997218..33997365,33997476..33997747)) /locus_tag="TCM_016688" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29827.m002658" /codon_start=1 /product="Component of oligomeric golgi complex isoform 1" /protein_id="EOY25349.1" /db_xref="TAIR:AT1G31780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NMI3" /translation="MGTVGLAPGLSRKLKKVLECRTDSPEVVASLNTLSTFYTENTPQ ARRNLRSTIEKRSLQINLDFLRASQAAQLALDRVEDEVNSLADCCDRIAKALNSCSAS TADIISTTERLKQELDVTTQKQEIASCFLRDYQLSPEEINALRDEELNENFFKALSHV QEIHANCKILLSTHHQRAGLELMDMMAMYQEGAYERLCRWVQAECRKLGDTDNPEVSE LLRTAVRCLKERPVLFKYCAEEVANMRHNALFRRFISALTRGGPGGMPRPIEVHAHDP LRYVGDMLGWLHQALASERELVLALLDPDAVVDTGSTANRFSKNVENDSGKIEADLTF VLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNTL WALKDAAQKTFFEILKGRGEKLLRYPPLVAVDLSPPPAVREGVSVLLEIIETYNSMMV PASGKKPAFDPVISALLDPIIQMCEQAAEAQKSKGAGHTSRSRRMSSDSGQLSKSAVD AILSNNNSSKFSQNSETPSKIFLINCLCAIQQPLLGHEVAAEYAKKLGMMIDNHVRVL VEKEVDAILSRCGLSIKMHHFHNSLNKDATDGAPLAELEDTTPASLSECLKAFFGFIL GSESSLPEFEQMQVPKLRSEAGIQVAKSLADAYELIYNAIMDPRNSYPDPKSLARHPP DQIRTILGI" CDS complement(join(33994107..33994619,33994758..33994904, 33995212..33995496,33995585..33995848,33995973..33996119, 33996218..33996341,33996682..33996752,33997012..33997119, 33997218..33997365,33997476..33997747)) /locus_tag="TCM_016688" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29827.m002658" /codon_start=1 /product="Component of oligomeric golgi complex isoform 4" /protein_id="EOY25352.1" /db_xref="TAIR:AT1G31780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NMI3" /translation="MGTVGLAPGLSRKLKKVLECRTDSPEVVASLNTLSTFYTENTPQ ARRNLRSTIEKRSLQINLDFLRASQAAQLALDRVEDEVNSLADCCDRIAKALNSCSAS TADIISTTERLKQELDVTTQKQEIASCFLRDYQLSPEEINALRDEELNENFFKALSHV QEIHANCKILLSTHHQRAGLELMDMMAMYQEGAYERLCRWWVQAECRKLGDTDNPEVS ELLRTAVRCLKERPVLFKYCAEEVANMRHNALFRRFISALTRGGPGGMPRPIEVHAHD PLRYVGDMLGWLHQALASERELVLALLDPDAVVDTGSTANRFSKNVENDSGKIEADLT FVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNT LWALKDAAQKTFFEILKGRGEKLLRYPPLVAVDLSPPPAVREGVSVLLEIIETYNSMM VPASGKKPAFDPVISALLDPIIQMCEQAAEAQKSKGAGHTSRSRRMSSDSGQLSKSAV DAILSNNNSSKFSQNSETPSKIFLINCLCAIQQPLLGHEVAAEYAKKLGMMIDNHVRV LVEKEVDAILSRCGLSIKMHHFHNSLNKDATDGAPLAELEDTTPASLSECLKAFFGFI LGSESSLPEFEQMQVPKLRSEAGIQVAKSLADAYELIYNAIMDPRNSYPDPKSLARHP PDQIRTILGI" CDS complement(join(33994107..33994619,33994758..33994904, 33995212..33995496,33995585..33995848,33995973..33996119, 33996218..33996341,33996685..33996755,33997012..33997119, 33997218..33997365,33997476..33997747)) /locus_tag="TCM_016688" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29827.m002658" /codon_start=1 /product="Component of oligomeric golgi complex isoform 3" /protein_id="EOY25351.1" /db_xref="TAIR:AT1G31780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NMI3" /translation="MGTVGLAPGLSRKLKKVLECRTDSPEVVASLNTLSTFYTENTPQ ARRNLRSTIEKRSLQINLDFLRASQAAQLALDRVEDEVNSLADCCDRIAKALNSCSAS TADIISTTERLKQELDVTTQKQEIASCFLRDYQLSPEEINALRDEELNENFFKALSHV QEIHANCKILLSTHHQQRAGLELMDMMAMYQEGAYERLCRWVQAECRKLGDTDNPEVS ELLRTAVRCLKERPVLFKYCAEEVANMRHNALFRRFISALTRGGPGGMPRPIEVHAHD PLRYVGDMLGWLHQALASERELVLALLDPDAVVDTGSTANRFSKNVENDSGKIEADLT FVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNT LWALKDAAQKTFFEILKGRGEKLLRYPPLVAVDLSPPPAVREGVSVLLEIIETYNSMM VPASGKKPAFDPVISALLDPIIQMCEQAAEAQKSKGAGHTSRSRRMSSDSGQLSKSAV DAILSNNNSSKFSQNSETPSKIFLINCLCAIQQPLLGHEVAAEYAKKLGMMIDNHVRV LVEKEVDAILSRCGLSIKMHHFHNSLNKDATDGAPLAELEDTTPASLSECLKAFFGFI LGSESSLPEFEQMQVPKLRSEAGIQVAKSLADAYELIYNAIMDPRNSYPDPKSLARHP PDQIRTILGI" mobile_element 34001142..34001184 /note="source:CACAO_on_SS_E42_scaffold_2 8450 8492" /mobile_element_type="transposon:TIR/Mutator" mobile_element 34001147..34001197 /note="source:CACAO_on_E1_scaffold_1 79 129" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(34001153..34001207) /note="source:INTACT93F_F345_scaffold_2-int 16863 16917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34001185..34001217) /note="source:scaffold_5_CACTA_0608 8741 8813" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34004728..34004748) /note="source:CACAO_M_E1149_F297_scaffold_1 1170 1245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34004749..34004826 /note="source:scaffold_1_CACTA_0011 7445 7521" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34004769..34004835 /note="source:CACAO_M_E52882_F369_scaffold_8 1425 1491" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34004827..34004852) /note="source:CACAO_M_E1149_F297_scaffold_1 1065 1169" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 34007760..34011633 /locus_tag="TCM_016689" /note="dbxref CacaoGD:Thecc1EG016689" mRNA join(34007760..34008047,34008205..34008994, 34009503..34009679,34009766..34009950,34010193..34011633) /locus_tag="TCM_016689" /product="ATP-binding cassette 14" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036869001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011893t1" /inference="similar to AA sequence:Phytozome:GSVIVT01036869001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11909t1" CDS join(34007880..34008047,34008205..34008994, 34009503..34009679,34009766..34009950,34010193..34010843) /locus_tag="TCM_016689" /note="paralog of Thecc1EG011893t1" /codon_start=1 /product="ATP-binding cassette 14" /protein_id="EOY25353.1" /db_xref="Phytozome:GSVIVT01036869001" /db_xref="TAIR:AT1G31770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C6W5" /translation="MPLNCIAPKPEHGSSGPVEALSETSSESHNRAVLAFPIQHNSQP PVRVTLYPITLKFEKVVYKVKLEQKGSCWGAWITREKTILNGITGVVCPGEILAMLGP SGSGKTTLLTALGGRLTGKLSGNITYNGQPFSGGVKRRTGFVAQDDVLYPHLTVTETL LFTALLRLPKSLSRDEKVQHVERVIAELGLTRCRNSIIGGPLLRGISGGEKKRVSIGQ EMLINPSLLLLDEPTSGLDSTTAQRILTTIKRLASGGRTVVTTIHQPSSRLYHMFDKV VLLSEGCPIYYGSASAALEYFSSIGFSTSMTVNPADLLLDLANGIGPDFKHSVEQVEN TEQEQKSVKDALISAYEKNISPRLKAELCNSDVNNHVNTKEAPARNGKSEEWCTSWWH QFKVLLQRGVRERRHEAFNGLRIFQVISVAVLGGLLWWHTPASHISDRIALLFFFSVF WGFYPLYNAVFTFPQERTMLIKERSSGMYRLSSYFLARTFGDLPLELALPTAFVFIIY WMGGLKPDPVTFILSLLVVLYNVLVSQSLGLAIGAILMDIKQATTLASVTTLVFLIAG GYYVQQIPAFIVWLKYLSYSYYCYKLLLGVQYNEDDYYECSKGVLCRVGDLPAIKSMG LNHLWVDVCIMALMLVGYRLIAYMALHRVRLR" gene 34012772..34016532 /locus_tag="TCM_016691" /note="dbxref CacaoGD:Thecc1EG016691" mRNA join(34012772..34013203,34013291..34013353, 34013499..34013653,34013765..34013890,34014273..34014474, 34014848..34014962,34015063..34016532) /locus_tag="TCM_016691" /product="Zinc knuckle family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036870001" /inference="similar to AA sequence:ricco:29827.m002660" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01216t00002" mRNA join(34012772..34013203,34013291..34013349, 34013498..34013653,34013765..34013890,34014273..34014474, 34014848..34014962,34015063..>34015449) /locus_tag="TCM_016691" /product="Zinc knuckle family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036870001" /inference="similar to AA sequence:ricco:29827.m002660" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc247t3; inference alignment:Newbler:10:TSA:cgbaP2_g01216t00002" CDS join(34012967..34013203,34013291..34013353, 34013499..34013653,34013765..34013890,34014273..34014474, 34014848..34014962,34015063..34016048) /locus_tag="TCM_016691" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29827.m002660" /codon_start=1 /product="Zinc knuckle family protein isoform 1" /protein_id="EOY25354.1" /db_xref="TAIR:AT4G19190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZ67" /translation="MDGIGEEGGGIRLSKRFSDNKPGSSGEVDYKTKAGTAWSHSYLN QKPWHPLSYPNQRRKWIAEQTHSHRMRRAEEVAREYAQEQEFFRQTALISKKEKEKVE MMKAVSFMYVRPPGYNAESAKAAEIADERKRIEPNNVSDDQSTDVVSTAMPTESLPGK DPNGAEKKKPRPKDVFGRPLPTEEEFEILKNAPRLETGVLGRVKPFGVEVRNVKCLRC GNYGHQSGDRECPLKDAIMPNEESRLKRDDPLTAIMAQMDPTEPLKWELKQKPGMSPP RGGFQPDDPNQQIVAEDIFDEYGGFLSGGNIPDLLTNISCKPKKRKSSSKSKHKRQSS PSSRELEVPDQDGLPSPAHSDDDERRSKRKKKTKKKKKKKKRQNYSESSSSDGLDFDR HQRKRRNKYSYSSEDSDSDRQYKTKHKCSYSSEDSDSDRQYKTKESREKLSYTSEDLD SDQECWGKRSRSKHSYSSEDFDRHHRKIKHKCSYSSEDSDSGRHDLKKKSTQKPYTSD RMDVDRHWSKRSGQKHSYSYEDDDGHDRKSKNKYSYYSDHGRQEHRKKTRQKPYISED LGTDTRNRSERSRHKHPHSSEDDADRHVKSEKSRHKHSSSRQYEDSDFDADSRSRHHP RRH" CDS join(34012967..34013203,34013291..34013349, 34013498..34013653,34013765..34013890,34014273..34014474, 34014848..34014962,34015063..>34015448) /locus_tag="TCM_016691" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29827.m002660" /codon_start=1 /product="Zinc knuckle family protein isoform 2" /protein_id="EOY25355.1" /db_xref="TAIR:AT4G19190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZ67" /translation="MDGIGEEGGGIRLSKRFSDNKPGSSGEVDYKTKAGTAWSHSYLN QKPWHPLSYPNQRRKWIAEQTHSHRMRRAEEVAREYAQEQEFFRQTALISKKEKEVEM MKAVSFMYVRPPGYNAESAKAAEIADERKRIEPNNVSDDQSTDVVSTAMPTESLPGKD PNGAEKKKPRPKDVFGRPLPTEEEFEILKNAPRLETGVLGRVKPFGVEVRNVKCLRCG NYGHQSGDRECPLKDAIMPNEESRLKRDDPLTAIMAQMDPTEPLKWELKQKPGMSPPR GGFQPDDPNQQIVAEDIFDEYGGFLSGGNIPDLLTNISCKPKKRKSSSKSKHKRQSSP SSRELEVPDQDGLPSPAHSDDDERRSKRKKKTKKKKKKKKRQNYSESSSSDGLDFDRH QRKRRNKYSYSSEDSDSDRQYKTKHKCSYSSEDSD" mobile_element complement(34013348..34013386) /note="source:scaffold_9_CACTA_0943 9098 9136" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34013350..34013392) /note="source:CACAO_Mariner_E69_scaffold_2 4238 4280" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(34015573..34015672) /note="source:CACAO_on_E244_scaffold_9 387 486" /mobile_element_type="transposon:TIR/Mutator" gene 34016629..34017393 /locus_tag="TCM_016692" /note="dbxref CacaoGD:Thecc1EG016692" mRNA join(34016629..34016888,34017145..34017393) /locus_tag="TCM_016692" /product="2-dehydro-3-deoxyphosphooctonate aldolase, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29804.m001504" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1697t5; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1697t7" mRNA join(34016629..34016863,34017145..34017393) /locus_tag="TCM_016692" /product="2-dehydro-3-deoxyphosphooctonate aldolase, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29804.m001504" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1697t7; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1697t7" CDS join(34016702..34016863,34017145..34017270) /locus_tag="TCM_016692" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="2-dehydro-3-deoxyphosphooctonate aldolase, putative isoform 1" /protein_id="EOY25356.1" /translation="MAANAGRVILKGKMKVKGVPSASSQLGKYLGIPEPPRADTSKLI STFIKINNRQGPGMKKDGRCMEKVKALLDGKDRVGTPEIAKLLSPQFVNPA" CDS join(34016702..34016888,34017145..34017236) /locus_tag="TCM_016692" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="2-dehydro-3-deoxyphosphooctonate aldolase, putative isoform 2" /protein_id="EOY25357.1" /translation="MAANAGRVILKGKMKVKGVPSASSQLGKYLGIPEPPRADTSKLI STFIKINNRQVFRPQSSTRPRYEEGRSLHGEGEGLIGWQRQSWNPGDC" gene 34018072..34019276 /locus_tag="TCM_016693" /note="dbxref CacaoGD:Thecc1EG016693" mRNA join(34018072..34018405,34019091..34019276) /locus_tag="TCM_016693" /product="SWIB/MDM2 domain superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036871001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007182t1" /inference="similar to AA sequence:TAIR:AT2G35605.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10405t1" CDS join(34018178..34018405,34019091..34019216) /locus_tag="TCM_016693" /note="paralog of Thecc1EG007182t1" /codon_start=1 /product="SWIB/MDM2 domain superfamily protein" /protein_id="EOY25358.1" /db_xref="TAIR:AT2G35605.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS61" /translation="MMATSRVLGTGRGLIAVAKASSTSFASSSASNTSGAGLMRMMPV SPQLGEFLGASESSRTEAVKKIWGYIKLHKLQNPANKREILCDEKLKRIFAGKDSVGM FEITKLLSPHFVKSH" gene complement(34019723..34023211) /locus_tag="TCM_016694" /note="dbxref CacaoGD:Thecc1EG016694" mRNA complement(join(34019723..34022184,34023126..34023211)) /locus_tag="TCM_016694" /product="Nine-cis-epoxycarotenoid dioxygenase 4" /inference="alignment:exonerate-protein:2:frave:gene26820" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016684t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s12320.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc3414t1; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc4050t1" CDS complement(34020085..34021878) /locus_tag="TCM_016694" /note="paralog of Thecc1EG016684t1" /codon_start=1 /product="Nine-cis-epoxycarotenoid dioxygenase 4" /protein_id="EOY25359.1" /db_xref="Phytozome:POPTR_0019s12320.1" /db_xref="TAIR:AT4G19170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2E7V5" /translation="MDAFSSSSFSKLASPTVTLPNSKTISTHPGPSHAPHLNISSVRM ENKPQTSTTTTSKTKPPTSNIQIPSLTVSSSIGAEKKAETTVTTRMFDTLNDFINNSI DPPLRPAFDPRFVLSGNFASVDELPPTDCEVIQGSLPSCLDGAYIRNGPNPQYQPRGP YHLFDGDGMLHSLRISQGKATLCSRFVKTYKYTTEQSIGSPVVPNFFSSFSSMPACLA RGALYAARVIIGHYNPAKGIGPANTSLALFGNRLYALGESDLPYAVRLTPSGDIETLD RHDFDGKLLASMTAHPKIDPDSGEAFAFRYGLLRPFLTYFNFDADGNKHSDVPILSMA RPSFVHDFAITKNYALFPDIQMEIKPMKMILEGGSPMILNPAKVPRIGVIPRYAKNDS EMRWFDVPGFNPVHVVNAWEVDDGNAIFMLAPNIISVEHALERSDLIHGMMEKVRVDL KTGLVTRQPISSSNLDFAVINPAYLAKKNRYVYSGVGEPLPKISGVVKLDVSKGEFQE CTVGSRMYGPGCYGGEPFFVARAPENPEAEEDDGYLLTYVHNENTGESRFLVMDAKSP NLDIVATVKLPQRIPYGFHGLFVKESELNKL" mobile_element 34022536..34023115 /note="source:CACAO_Again_on_E173_scaffold_7 2 893" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(34022932..34023146) /note="source:scaffold_3_CACTA_0398 3320 3552" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34023014..34023148 /note="source:CACAO_on_SS_E42_scaffold_2 24367 24504" /mobile_element_type="transposon:TIR/Mutator" mobile_element 34023015..34023173 /note="source:INTACT383F_F354_scaffold_3-int 4611 4782" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 34023567..34026457 /locus_tag="TCM_016695" /note="dbxref CacaoGD:Thecc1EG016695" mRNA join(34023567..34023729,34024237..34024396, 34024821..34024968,34025075..34025152,34026053..34026457) /locus_tag="TCM_016695" /product="SNARE-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g13190.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029552t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021391001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b016131t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g07147t00001" mRNA join(34023600..34023729,34024237..34024396, 34024821..34024968,34025075..34025152,34025805..34025889, 34026053..34026338) /locus_tag="TCM_016695" /product="SNARE-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g13190.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029552t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021391001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07147t00001; inference alignment:Newbler:10:TSA:cgbaP1_g07147t00001" CDS join(34023727..34023729,34024237..34024396, 34024821..34024968,34025075..34025152,34025805..34025889, 34026053..34026112) /locus_tag="TCM_016695" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029552t1" /codon_start=1 /product="SNARE-like superfamily protein isoform 1" /protein_id="EOY25360.1" /db_xref="Phytozome:GSVIVT01021391001" /db_xref="TAIR:AT1G60970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6Z844" /translation="MESCPSVKNIILLDSEGQRVAVKYYSDDWPTNSAKEAFEKSIFT KTQKTNARTEAEIAMFENHIVVYKFVQDLHFFVTGAEDENELILATVLQGFFDSVDLL LRGTVDKKEALENLDLILLCLDEIVDGGIILETDANVIVGKVASHSIDSGAPLSEQTI SQALATAREHLTRSLLK" CDS join(34023727..34023729,34024237..34024396, 34024821..34024968,34025075..34025152,34026053..34026092) /locus_tag="TCM_016695" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029552t1" /codon_start=1 /product="SNARE-like superfamily protein isoform 2" /protein_id="EOY25361.1" /db_xref="Phytozome:GSVIVT01021391001" /db_xref="TAIR:AT1G60970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5NA06" /translation="MESCPSVKNIILLDSEGQRVAVKYYSDDWPTNSAKEAFEKSIFT KTQKTNARTEAEIAMFENHIVVYKFVQDLHFFVTGAEDENELILATVLQGFFDSVDLL LRGTVDKKEALENLDLILLCLDEIVDGGQLVKHWPLLGNI" misc_feature join(34025123..34025889,34026053..34026072) /locus_tag="TCM_016695" /note="Gene fragment of Thecc1EG016695t1; dbxref gnl|CacaoGD|Thecc1EG016695t1; quality class is mediumpartial-partof is thecc1eg016695t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc43t4; dbxref CacaoGD:Thecc1EG016696t1" gene 34026510..34032784 /locus_tag="TCM_016697" /note="dbxref CacaoGD:Thecc1EG016697" mRNA join(34026510..34027173,34027262..34027501, 34027601..34027674,34028097..34028169,34028568..34028678, 34029081..34029255,34029371..34029489,34029704..34029764, 34029857..34029917,34030748..34030783,34031421..34031710, 34031815..34032784) /locus_tag="TCM_016697" /product="F-box family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24430.1" /inference="similar to AA sequence:Phytozome:Glyma01g35750.1" /note="quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12301t1" CDS join(34027108..34027173,34027262..34027501, 34027601..34027674,34028097..34028169,34028568..34028678, 34029081..34029255,34029371..34029489,34029704..34029764, 34029857..34029917,34030748..34030783,34031421..34031710, 34031815..34032062) /locus_tag="TCM_016697" /codon_start=1 /product="F-box family protein" /protein_id="EOY25362.1" /db_xref="Phytozome:Glyma01g35750.1" /db_xref="TAIR:AT5G45360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5Z9H2" /translation="MTLSDDEDKFLANFLESELSNEEERELEEPEAKRLRGGKDDEEE EPKRKGEGASCSNPNPDSGPGQVKNNSSISVPRRIESGTFSKIPPELFPHILKFLSSE DLVSCSLVCSFLNYAAADESLWRRLYCMRWGLLPPTKIRECAWKKLYIQRDEEDMIEL VRNCPSEFKEYYIQMQAAKRSQAPLPSQVKDDLIILDKTVADQVSMWKSSRGLADKVV ADHACSGETCSYYQIGDVFVCEKTGQVHVCDDTCREVILDPTNELLVCTISGHCFDRL LSPSEMELDPEQQQGGGTDEAEPFMGSGRFARAYLLGYNCDDEKELEAALSCSYTSLS LALALTHSWLKNMGKDKDKHKHDDKGLFSHHHGHGGYPPGAYPPPPGGYTPATGYPPH AGYPPQGYPPQGYPPAGYPPGGYPPSGHPGGYPPSGYPGASHSGHGGLGAMIAGGAAA AAAAMGAHHVAHGVHGGHHGGYAHHGKFKHHGGKFKHGKHGKFKHGKHGKFKHGKHGL FGGKFKKWK" gene complement(34032450..34037511) /locus_tag="TCM_016698" /note="dbxref CacaoGD:Thecc1EG016698" mRNA complement(join(34032450..34032561,34032619..34033026, 34033106..34033239,34033366..34033611,34033986..34034255, 34034365..34034550,34034635..34034830,34034921..34035225, 34035890..34035979,34036060..34036177,34036305..34036402, 34036506..34036591,34036991..34037109,34037229..34037511)) /locus_tag="TCM_016698" /product="RNAse l inhibitor protein 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036876001" /inference="similar to AA sequence:Phytozome:GSVIVT01036876001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02529t00002" mRNA complement(join(34032969..34033026,34033106..34034255, 34034365..34034550,34034635..34034830,34034921..34035225, 34035890..34035979,34036060..34036177,34036305..34036402, 34036506..34036591,34036991..34037181)) /locus_tag="TCM_016698" /product="RNAse l inhibitor protein 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036876001" /inference="similar to AA sequence:Phytozome:GSVIVT01036876001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc576t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc597t26; inference alignment:Newbler:10:TSA:cgbaL_g02529t00002" CDS complement(join(34033120..34033239,34033366..34033611, 34033986..34034255,34034365..34034550,34034635..34034830, 34034921..34035225,34035890..34035979,34036060..34036177, 34036305..34036402,34036506..34036591,34036991..34037093)) /locus_tag="TCM_016698" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNAse l inhibitor protein 2 isoform 1" /protein_id="EOY25363.1" /db_xref="Phytozome:GSVIVT01036876001" /db_xref="TAIR:AT4G19210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P61221" /translation="MADRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPA SKIAFISEELCIGCGICVKKCPFEAIQIINLPRDLDKDTTHRYGPNTFKLHRLPVPRP GQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDEREMKSELCVDLELNQVIDRNVGDLS GGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL SVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFKVA ETPQESAEEIETYARYKYPTMTKTQGNFKLKVIEGEFTDSQIIVMLGENGTGKTTFIR MLAGLLKSDSIEGSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYMHPQFVSD VMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVASK VIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGKPSVDCIANSPQSLLTGMNLFLS HLDITFRRDPTNYRPRINKLDSTKDREQKSAGSYYYLDD" CDS complement(join(34033890..34034255,34034365..34034550, 34034635..34034830,34034921..34035225,34035890..34035979, 34036060..34036177,34036305..34036402,34036506..34036591, 34036991..34037093)) /locus_tag="TCM_016698" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNAse l inhibitor protein 2 isoform 2" /protein_id="EOY25364.1" /db_xref="Phytozome:GSVIVT01036876001" /db_xref="TAIR:AT4G19210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P61221" /translation="MADRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPA SKIAFISEELCIGCGICVKKCPFEAIQIINLPRDLDKDTTHRYGPNTFKLHRLPVPRP GQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDEREMKSELCVDLELNQVIDRNVGDLS GGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL SVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFKVA ETPQESAEEIETYARYKYPTMTKTQGNFKLKVIEGEFTDSQIIVMLGENGTGKTTFIR MLAGLLKSDSIEGSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYMHPQFVSD VMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKVNILKSPTVKDIYKLKNRCSKFSV SPDKFEM" gene complement(34037561..34041327) /locus_tag="TCM_016699" /note="dbxref CacaoGD:Thecc1EG016699" mRNA complement(34037561..34041327) /locus_tag="TCM_016699" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400003505" /inference="similar to AA sequence:Phytozome:GSVIVT01036877001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11931t1" CDS complement(34037987..34040848) /locus_tag="TCM_016699" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY25365.1" /db_xref="Phytozome:GSVIVT01036877001" /db_xref="TAIR:AT4G19220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49680" /translation="MGSCWAVRSFRHTSKAIFPRDFIGIRRSFFCSALLPQHQNFSIR IVVSCKLKNPILFIESYRLFPNAHPLFTVNSLHFSTVLQPSAKMPQREPHQQYTQFYN VLDLLKYSVGRPNLVTATTAHCLAIKIGALAHLPACTSLLTAYSRAKDFNSSLALFDE FDDKDIIFRNAIISAAVENKSYGVAMQFFIEMVEVGCGFDSITLLLAVSALSHMKYSI HGKSLHCLSIKVGMLCDCSLCNALLDMYAKCGDLTSSESMFARMESRDAVSWNSMING FLYNGHPAKALWCFKEMIYLGVRVDTVSLSSAISASAALEELTSGQVIHGWGIKLGYK SDISCSNSLISLYSKYGDTEASESVFNEMVYKDVISWNAMIGGFASNGKTLETFDLLY KMQLTGYAQPDMVTLVTLMSFCAERMLLREGRSIHGYAIRKQMILDASVINSLLDMYS KCNSVVKAEFLFDMIPKRDLVSWNTMISCYSQNRQSKEAQSLFKKLIHQYSQWSLSTL LAVLPSCISPNSLQFGKSIHCWQLKAGFSSNILAVNSLMHMYINCGDLTAAFMLLEKI SAKEDIACWNTIIVGCTQNGHFREALATFNMMRQETNVRHDAITLVNVISSCGNLALI YEGKSLHGLAIKTFSGSETRVQNALTTMYGRCGHTKSARSVFGFCSSRNLCSWNCMIS AFSQNKDGRRALELFHFLEFEPNEITIVALLSACNQLGFLRQGKQIHGHVFRFGLSGN CYVSAALLDMYSNCGRLDVACQIFTRSKEKSVADWNSMISAYGYHSNGKKAVQLFHEM CESGLPSKSTFINLLSACSHSGLVNEGLWYYSLMLSEYGVEPVTEHQVCIVDMLGRAG KLQEAYEFIKQIAREPEPGVWGAMLSACNYHGNIEIGRKVAEHLFGLEPENVGYYISL ANMYVSAGGWKDAMELRQTIQERKLKKLPAYSLIDVGSM" gene complement(34041468..34049171) /locus_tag="TCM_016700" /note="dbxref CacaoGD:Thecc1EG016700" mRNA complement(join(34041468..34042040,34042166..34042252, 34043585..34043704,34043790..34043888,34044510..34044623, 34044968..34045021,34045114..34045208,34046020..34046155, 34046356..34046612,34047016..34047121,34047547..34047752, 34047836..34048114,34048592..34048852,34048966..34049171)) /locus_tag="TCM_016700" /product="Xyloglucanase 113 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29827.m002651" /inference="similar to AA sequence:ricco:29827.m002651" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14528t00001" CDS complement(join(34041873..34042040,34042166..34042252, 34043585..34043704,34043790..34043888,34044510..34044623, 34044968..34045021,34045114..34045208,34046020..34046155, 34046356..34046612,34047016..34047121,34047547..34047752, 34047836..34048114,34048592..34048781)) /locus_tag="TCM_016700" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29827.m002651" /codon_start=1 /product="Xyloglucanase 113 isoform 1" /protein_id="EOY25366.1" /db_xref="TAIR:AT2G35610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DFT3" /translation="MGGWRNAVQEAAGSKPLFLTIYATVIVGIVVSSFYVFSAIYSPS ASTTQSVSTSWLSSPSLSQNGVSLSSGQSINISQPSGIASQPGSNNLRPIWEAPPRTS KMPPLKFFSLTKELVEERAKDNVIIVTFGNFAFMDFILTWVKHLTDLGVSNLLVGAMD TKLLKALYWKGIPAFDMGSHMSTIDVGWGSPTFHKMGREKVLLINAILPFGYELLMCD TDMVWLKNPLPYLARYPDADVLTSSDQVVPTVVDDRLADWKQVGAAYNIGIFHWRPTE PAIKLAKEWKDMLLADDKIWDQNGFNELVRRQSGPAVDDDSGLFYAFDGNLKLGILPE SIFCSGHTYFVQAMYEQLRLEPYALHTTFQYAGTEGKRHRLREAMVFYDPPEYYDAPG GFLSFKPSIPKSLLLEGENNLESHFSLINYQMKQIRSALAIASLLNRTLVMPPLWCRL DRLWFPHPGVLVGSMTRQPFLCPLDHVFEVNVMLKDLPVEEFGPAINIREYSFLNNPL LPQQVKELWLDVQLCQEGTEDCHASSNTSRPGLLRFPKHSGEETFKTVFSAFKDVKVI QFSSMQDAFLGFSDKTREEKFRNRVKRYVGIWCCVDSHTPGHIYYDMYWDEKPGWKPA PPQTPEDDHPPF" mRNA complement(join(34043675..34043704,34043773..34043888, 34044510..34044623,34044968..34045021,34045114..34045208, 34046020..34046155,34046356..34046612,34047016..34047121, 34047547..34047752,34047836..34048114,34048592..34048981)) /locus_tag="TCM_016700" /product="Xyloglucanase 113 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29827.m002651" /inference="similar to AA sequence:ricco:29827.m002651" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc62t2; inference alignment:Newbler:10:TSA:cgbaL_g14528t00001" mRNA complement(join(34043675..34043888,34044510..34044623, 34044968..34045021,34045114..34045208,34046020..34046155, 34046356..34046612,34047016..34047121,34047547..34047752, 34047836..34048114,34048592..34048981)) /locus_tag="TCM_016700" /product="Xyloglucanase 113 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29827.m002651" /inference="similar to AA sequence:ricco:29827.m002651" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc60t1; inference alignment:Newbler:10:TSA:cgbaL_g14528t00001" CDS complement(join(34043685..34043888,34044510..34044623, 34044968..34045021,34045114..34045208,34046020..34046155, 34046356..34046612,34047016..34047121,34047547..34047752, 34047836..34048114,34048592..34048781)) /locus_tag="TCM_016700" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29827.m002651" /codon_start=1 /product="Xyloglucanase 113 isoform 3" /protein_id="EOY25368.1" /db_xref="TAIR:AT2G35610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DFT3" /translation="MGGWRNAVQEAAGSKPLFLTIYATVIVGIVVSSFYVFSAIYSPS ASTTQSVSTSWLSSPSLSQNGVSLSSGQSINISQPSGIASQPGSNNLRPIWEAPPRTS KMPPLKFFSLTKELVEERAKDNVIIVTFGNFAFMDFILTWVKHLTDLGVSNLLVGAMD TKLLKALYWKGIPAFDMGSHMSTIDVGWGSPTFHKMGREKVLLINAILPFGYELLMCD TDMVWLKNPLPYLARYPDADVLTSSDQVVPTVVDDRLADWKQVGAAYNIGIFHWRPTE PAIKLAKEWKDMLLADDKIWDQNGFNELVRRQSGPAVDDDSGLFYAFDGNLKLGILPE SIFCSGHTYFVQAMYEQLRLEPYALHTTFQYAGTEGKRHRLREAMVFYDPPEYYDAPG GFLSFKPSIPKSLLLEGENNLESHFSLINYQMKQIRSALAIASLLNRTLVMPPLWCRL DRLWFPHPGVLVGSMTRQPFLCPLDHVFEVNVMLKDLPVEEFGPAINIREYSFLNNPL LPQQVNEYQWYKFKLFLFYDLLRETLVWNVVSGKGVVA" CDS complement(join(34043701..34043704,34043773..34043888, 34044510..34044623,34044968..34045021,34045114..34045208, 34046020..34046155,34046356..34046612,34047016..34047121, 34047547..34047752,34047836..34048114,34048592..34048781)) /locus_tag="TCM_016700" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29827.m002651" /codon_start=1 /product="Xyloglucanase 113 isoform 2" /protein_id="EOY25367.1" /db_xref="TAIR:AT2G35610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DFT3" /translation="MGGWRNAVQEAAGSKPLFLTIYATVIVGIVVSSFYVFSAIYSPS ASTTQSVSTSWLSSPSLSQNGVSLSSGQSINISQPSGIASQPGSNNLRPIWEAPPRTS KMPPLKFFSLTKELVEERAKDNVIIVTFGNFAFMDFILTWVKHLTDLGVSNLLVGAMD TKLLKALYWKGIPAFDMGSHMSTIDVGWGSPTFHKMGREKVLLINAILPFGYELLMCD TDMVWLKNPLPYLARYPDADVLTSSDQVVPTVVDDRLADWKQVGAAYNIGIFHWRPTE PAIKLAKEWKDMLLADDKIWDQNGFNELVRRQSGPAVDDDSGLFYAFDGNLKLGILPE SIFCSGHTYFVQAMYEQLRLEPYALHTTFQYAGTEGKRHRLREAMVFYDPPEYYDAPG GFLSFKPSIPKSLLLEGENNLESHFSLINYQMKQIRSALAIASLLNRTLVMPPLWCRL DRLWFPHPGVLVGSMTRQPFLCPLDHVFEVNVMLKDLPVEEFGPAINIREYSFLNNPL LPQQVNEYQW" gene 34049922..34052133 /locus_tag="TCM_016701" /note="dbxref CacaoGD:Thecc1EG016701" mRNA join(34049922..34050694,34051158..34052133) /locus_tag="TCM_016701" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036884001" /inference="similar to AA sequence:ricco:29827.m002652" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11939t3" mRNA join(34049922..34050694,34051161..34052133) /locus_tag="TCM_016701" /product="Leucine-rich repeat protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036884001" /inference="similar to AA sequence:ricco:29827.m002652" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:PASA:2:TSA:puevd3b016136t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11939t3" CDS join(34050226..34050694,34051158..34051819) /locus_tag="TCM_016701" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29827.m002652" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY25369.1" /db_xref="TAIR:AT4G20450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0Q1" /translation="MWFLGFSTRWRHLWIMGAILLVILVTMILKKFALYLEAQASKCA DQEKLHREGKSNNDHQQPSRKSCSLCCNIGVVTRTYALEELKMATSDFRIRIGVGATS FVYLAELGDGKFGAVKRVMEQRGGSKKVFLDEVSVLLRISHPNLVGLLGFCLEKAGEQ LLLLEYVPNKSLFDRMHTYHGQSSGILSWSNRLSIALDIARALDYLHSQADPPIIHRD VKSSNILLIDNNQAKLADFGLCKLGYDKPGCQNPTIIKGSFGYVDTNYLKTGLVSPKS DVYSFGVLLLELITGLKSTQGSVTLADWTEECRKHHDVEVLAKMLDPKLNGDANLEQL KVLTDLANAALLENSEGRPDMSQIVDRISSCMEPQPHPSLPV" CDS join(34050226..34050694,34051161..34051819) /locus_tag="TCM_016701" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29827.m002652" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 2" /protein_id="EOY25370.1" /db_xref="TAIR:AT1G79620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0Q1" /translation="MWFLGFSTRWRHLWIMGAILLVILVTMILKKFALYLEAQASKCA DQEKLHREGKSNNDHQQPSRKSCSLCCNIGVVTRTYALEELKMATSDFRIRIGVGATS FVYLAELGDGKFGAVKRVMEQRGGSKKVFLDEVSVLLRISHPNLVGLLGFCLEKGEQL LLLEYVPNKSLFDRMHTYHGQSSGILSWSNRLSIALDIARALDYLHSQADPPIIHRDV KSSNILLIDNNQAKLADFGLCKLGYDKPGCQNPTIIKGSFGYVDTNYLKTGLVSPKSD VYSFGVLLLELITGLKSTQGSVTLADWTEECRKHHDVEVLAKMLDPKLNGDANLEQLK VLTDLANAALLENSEGRPDMSQIVDRISSCMEPQPHPSLPV" mobile_element complement(34056721..34058583) /note="source:CACAO_hAT_E410_scaffold_1 606 2486" /mobile_element_type="transposon:TIR/hAT" gene 34063095..34067534 /locus_tag="TCM_016702" /note="dbxref CacaoGD:Thecc1EG016702" mRNA join(34063095..34063836,34064674..34064999, 34065083..34065401,34065632..34066018,34066120..34066294, 34066411..34066517,34066633..34066751,34066892..34067534) /locus_tag="TCM_016702" /product="Abscisic acid 8'-hydroxylase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007064t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s24360.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00568t00001" CDS join(34063684..34063836,34064674..34064999, 34065083..34065401,34065632..34066018,34066120..34066294, 34066411..34066517,34066633..34066751,34066892..34066985) /locus_tag="TCM_016702" /note="paralog of Thecc1EG007064t1" /codon_start=1 /product="Abscisic acid 8'-hydroxylase 1" /protein_id="EOY25371.1" /db_xref="Phytozome:POPTR_0004s24360.1" /db_xref="TAIR:AT4G19230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0H211" /translation="MWKKIEFGLGDNGSEQNQIYHPNFGEFGVMRLVICTIVIEPVHD GFVPLFNPIYTRCLACFLHTTSFSTQLAATTTTTTPTLSTPTIQLLLIEFMEFNFMFY SFASIFLIFLFCCLFKSFKSNSRQLPLPPGTLGWPYIGETFQLYSQNPNVFFASKQKR YGSVFKTHILGCPCVMISSPEAAKFVLVTRAHLFKPTFPASKERMLGKQAIFFHQGEY HAKLRKLVLRAFMPEAIKSIVSDIESIAKDSLQSLEGREITTFLEMKTYTFNVALLSI FGKDEVLYREDLKRCYYILEKGYNSMPINLPGTLFNKSMKARKELAQILAKILSTRRQ MKLDCNDLLGSFMGDKEGLTDEQIADNIIGVIFAARDTTASVLTWIIKYLGENLSVLQ AVTNEQEAIIRSKEKCGEEQTLTWADTRKMPITSRVIQETLRVASILSFTFREAVEDV EYEGYLIPKGWKVLPLFRNIHHNPEIFPDPEKFDPSRFEATPKPNTFLPFGNGTHSCP GNELAKLEIMVLLHHLTTKYRWSMAGANSGIQYGPFALPQNGLPIRLTRKP" gene complement(34069665..34073635) /locus_tag="TCM_016703" /note="dbxref CacaoGD:Thecc1EG016703" mRNA complement(join(34069665..34070011,34070098..34070111, 34070238..34070327,34070640..34070721,34071523..34071593, 34072396..34072428,34072709..34072738,34073006..34073074, 34073221..34073635)) /locus_tag="TCM_016703" /product="Embryo defective 3006, putative isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020028t1" /inference="similar to AA sequence:Phytozome:GSVIVT01036886001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10418t1" mRNA complement(join(34069712..34070097,34070238..34070327, 34070640..34070721,34071523..34071593,34072396..34072428, 34072709..34072738,34073006..34073074,34073221..34073535)) /locus_tag="TCM_016703" /product="Embryo defective 3006, putative isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020028t1" /inference="similar to AA sequence:Phytozome:GSVIVT01036886001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b016140t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10418t1" CDS complement(join(34069954..34070011,34070098..34070111, 34070238..34070327,34070640..34070721,34071523..34071593, 34072396..34072428,34072709..34072738,34073006..34073074, 34073221..34073340)) /locus_tag="TCM_016703" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020028t1" /codon_start=1 /product="Embryo defective 3006, putative isoform 1" /protein_id="EOY25372.1" /db_xref="Phytozome:GSVIVT01036886001" /db_xref="TAIR:AT4G19350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0P7" /translation="MGSNGGGAAPPLIGLGRRQSDLRKSFNLAVRSLLTTCPKQEFSK AFPNFTSAEQERLHQLFIQVITSLHGNVEDEFKSLCQETQVATALDTVEQLVEEQHLD PLISDKTNIMDVVHNLSTAKKAEIQYLRGLLERAEEHNHLIQARVELLKNRRQEVSST KDVEKHNFCSTDKLHGLVDHTNTFVLRC" CDS complement(join(34070026..34070097,34070238..34070327, 34070640..34070721,34071523..34071593,34072396..34072428, 34072709..34072738,34073006..34073074,34073221..34073340)) /locus_tag="TCM_016703" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020028t1" /codon_start=1 /product="Embryo defective 3006, putative isoform 2" /protein_id="EOY25373.1" /db_xref="Phytozome:GSVIVT01036886001" /db_xref="TAIR:AT4G19350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0P7" /translation="MGSNGGGAAPPLIGLGRRQSDLRKSFNLAVRSLLTTCPKQEFSK AFPNFTSAEQERLHQLFIQVITSLHGNVEDEFKSLCQETQVATALDTVEQLVEEQHLD PLISDKTNIMDVVHNLSTAKKAEIQYLRGLLERAEEHNHLIQARVELLKNRRQEVSST KDVEKVRGGILSYGEHKMSGFSDLQLVG" gene complement(34073935..34081925) /locus_tag="TCM_016704" /note="dbxref CacaoGD:Thecc1EG016704" mRNA complement(join(34073935..34075552,34076191..34076334, 34077366..34077443,34077633..34077749,34077852..34077908, 34078094..34078225,34078304..34078501,34079372..34079482, 34079602..34079817,34079912..34080097,34080826..34081925)) /locus_tag="TCM_016704" /product="Adaptin family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24340.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s24340.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc184t3" CDS complement(join(34074503..34075552,34076191..34076334, 34077366..34077443,34077633..34077749,34077852..34077908, 34078094..34078225,34078304..34078501,34079372..34079482, 34079602..34079817,34079912..34080097,34080826..34081392)) /locus_tag="TCM_016704" /codon_start=1 /product="Adaptin family protein" /protein_id="EOY25374.1" /db_xref="Phytozome:POPTR_0004s24340.2" /db_xref="TAIR:AT1G31730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0P6" /translation="MGSQGGFYQSKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRI SEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDSLLVKRTGYLAVTLFLN EDHDLIILIVNTIQKDLKSDNYLVVCAALNAVCKLINEETIPAVLPQVVELLGHPKEA VRKKAIMALHRFYQKSPSSVSHLVSNFRKRLCDNDPGVMGATLCPLFDLITIDVNSYK DLVVSFVSILKQVAERRLPKAYDYHQMPAPFIQIKLLKILALLGSGDKQASENMYTVV GDLFRKCDSSSNIGNAVLYECICCVSSIYPNAKLLESAADVISRFLKSDSHNLKYMGI DALGRLIKISPDIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSTNVEVIVDRMID YMISINDNHYKTEIASRCVELAEQFAPSNQWFIQTMNKVFEHAGDLVNIKVAHNLMRL IAEGFGEDDDSADSQLRSSAVESYLRILGEPKLPSVFLQVICWVLGEYGTADGKFSAS YITGKLCDVAEAYSNDETVKAYAVTALMKIYAFEIAARRKVDLLPECQSLMEELLASH STDLQQRAYELQAVIGLDAHAVECIMPSDASCEDIEVDKGLSFLNGYVEESIEKGAQP YIPESERSGMLNISNFRNQDHHEASSHGLRFEAYELPKPTVQSRIPPASLASTELVPV PEPTYLRESYQTPSVTSVSSDAGSSELKLRLDGVQKKWGKPTYAPATSTSNSTAQKTV NGVTQVEGASSTNSRTRETYDSRKPQVEISPEKQKLAASLFGGSSKTEKRPATGHKTS KASTHMVEKSHVPKSSMEVASEKTAPVQPPPDLLDLGEPTVTSIAPFVDPFKQLEGLL DPTQVGSAAATKSPDIMALYVDTPAGIHNKDDGDLLSGLSNPSVTNMPGGTTTTQQEQ RSKGPNPKDSLEKDALVRQMGVNPSSQNPNLFRDLLG" gene 34083460..34089318 /locus_tag="TCM_016705" /note="dbxref CacaoGD:Thecc1EG016705" mRNA join(34083460..34083902,34084907..34085007, 34085486..34085557,34085650..34086537,34086737..34086790, 34088034..34088231,34088317..34088427,34088535..34089318) /locus_tag="TCM_016705" /product="Decapping 5-like, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036888001" /inference="similar to AA sequence:frave:gene10946" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11969t1" mRNA join(34083460..34083902,34084907..34085007, 34085486..34085557,34085650..34086537,34088034..34088231, 34088317..34088427,34088535..34089318) /locus_tag="TCM_016705" /product="Decapping 5-like, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036888001" /inference="similar to AA sequence:Phytozome:GSVIVT01036888001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b016142t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11969t1" mRNA join(34083580..34083902,34084907..34085007, 34085486..34085557,34085650..34086537,34086737..34086790, 34088034..34088231,34088317..34088466,34088556..34089048) /locus_tag="TCM_016705" /product="Decapping 5-like, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036888001" /inference="similar to AA sequence:Phytozome:POPTR_0004s24330.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1404t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11969t1" mRNA join(34083580..34083902,34084907..34085007, 34085486..34085557,34085650..34086537,34088034..34088231, 34088317..34088466,34088556..34089048) /locus_tag="TCM_016705" /product="Decapping 5-like, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036888001" /inference="similar to AA sequence:Phytozome:POPTR_0004s24330.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1587t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11969t1" CDS join(34083755..34083902,34084907..34085007, 34085486..34085557,34085650..34086537,34086737..34086790, 34088034..34088231,34088317..34088427,34088535..34088687) /locus_tag="TCM_016705" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene10946" /codon_start=1 /product="Decapping 5-like, putative isoform 1" /protein_id="EOY25375.1" /db_xref="TAIR:AT5G45330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0P5" /translation="MASESSSNSKNVGDSYIGNFLSLISKYEIRYEGVLYYLNVQDSA IGLQNVRSYGTEGRKKDGPQVPPSDKVYEYILFRGSDIKDLQVKSPPPVQIDEQINND PAIIQSQFAGVPLSPFPSVSVGGRTLTESTQWQDNPALASRVYPSALPTHQFSSQVYP SNYSLAAQNAGTPLFSTPLYWQGYNGTPSNVSQAQQNPIPVQSPSMLSSPLTVQSHVN NPDLNSSPIMGLINASEPVNPVLSTITSSSSHSSVTGSFTPVQGSMYPNLPSCSSIKA SPPSQAAYTANRLSMSSFPSSFGDTNIPESQPIVKPVTSPAAADPLSVLPNPMPYPAW SSGSLLTSSPSLVTPGQLAQTRPHVLSSTQNTYPDHTIAVASLTSYTPSVNSTPVTQP PLLPLPAPAQQEQNFRTEILSFAECLFRESLYSTTLYTEEFDFEAMNEKFKKDEVWGY LGKASQKDKAEGMEDDASDHSLGDKQGFGLLAKFDTQPAYKKDDFFDTISCNSHSRGA RNGQNRFSERMKLDSETFGNFQQRSHVSYGPYRGYGAGRGQNYGGSYNWARGYGYGGR GCGQNMYP" CDS join(34083755..34083902,34084907..34085007, 34085486..34085557,34085650..34086537,34088034..34088231, 34088317..34088427,34088535..34088687) /locus_tag="TCM_016705" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Decapping 5-like, putative isoform 4" /protein_id="EOY25378.1" /db_xref="Phytozome:GSVIVT01036888001" /db_xref="TAIR:AT5G45330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0P5" /translation="MASESSSNSKNVGDSYIGNFLSLISKYEIRYEGVLYYLNVQDSA IGLQNVRSYGTEGRKKDGPQVPPSDKVYEYILFRGSDIKDLQVKSPPPVQIDEQINND PAIIQSQFAGVPLSPFPSVSVGGRTLTESTQWQDNPALASRVYPSALPTHQFSSQVYP SNYSLAAQNAGTPLFSTPLYWQGYNGTPSNVSQAQQNPIPVQSPSMLSSPLTVQSHVN NPDLNSSPIMGLINASEPVNPVLSTITSSSSHSSVTGSFTPVQGSMYPNLPSCSSIKA SPPSQAAYTANRLSMSSFPSSFGDTNIPESQPIVKPVTSPAAADPLSVLPNPMPYPAW SSGSLLTSSPSLVTPGQLAQTRPHVLSSTQNTYPDHTIAVASLTSYTPSVNSTPVTQP PLLPLPAPAQQSLYSTTLYTEEFDFEAMNEKFKKDEVWGYLGKASQKDKAEGMEDDAS DHSLGDKQGFGLLAKFDTQPAYKKDDFFDTISCNSHSRGARNGQNRFSERMKLDSETF GNFQQRSHVSYGPYRGYGAGRGQNYGGSYNWARGYGYGGRGCGQNMYP" CDS join(34083755..34083902,34084907..34085007, 34085486..34085557,34085650..34086537,34086737..34086790, 34088034..34088231,34088317..34088436) /locus_tag="TCM_016705" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Decapping 5-like, putative isoform 2" /protein_id="EOY25376.1" /db_xref="Phytozome:POPTR_0004s24330.1" /db_xref="TAIR:AT5G45330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0P5" /translation="MASESSSNSKNVGDSYIGNFLSLISKYEIRYEGVLYYLNVQDSA IGLQNVRSYGTEGRKKDGPQVPPSDKVYEYILFRGSDIKDLQVKSPPPVQIDEQINND PAIIQSQFAGVPLSPFPSVSVGGRTLTESTQWQDNPALASRVYPSALPTHQFSSQVYP SNYSLAAQNAGTPLFSTPLYWQGYNGTPSNVSQAQQNPIPVQSPSMLSSPLTVQSHVN NPDLNSSPIMGLINASEPVNPVLSTITSSSSHSSVTGSFTPVQGSMYPNLPSCSSIKA SPPSQAAYTANRLSMSSFPSSFGDTNIPESQPIVKPVTSPAAADPLSVLPNPMPYPAW SSGSLLTSSPSLVTPGQLAQTRPHVLSSTQNTYPDHTIAVASLTSYTPSVNSTPVTQP PLLPLPAPAQQEQNFRTEILSFAECLFRESLYSTTLYTEEFDFEAMNEKFKKDEVWGY LGKASQKDKAEGMEDDASDHSLGDKQGFGLLAKFDTQPAYKKDDFFDTISCNSHSRGA RNGQNRFSERMKLDSEVC" CDS join(34083755..34083902,34084907..34085007, 34085486..34085557,34085650..34086537,34088034..34088231, 34088317..34088436) /locus_tag="TCM_016705" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Decapping 5-like, putative isoform 5" /protein_id="EOY25379.1" /db_xref="Phytozome:POPTR_0004s24330.1" /db_xref="TAIR:AT5G45330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0P5" /translation="MASESSSNSKNVGDSYIGNFLSLISKYEIRYEGVLYYLNVQDSA IGLQNVRSYGTEGRKKDGPQVPPSDKVYEYILFRGSDIKDLQVKSPPPVQIDEQINND PAIIQSQFAGVPLSPFPSVSVGGRTLTESTQWQDNPALASRVYPSALPTHQFSSQVYP SNYSLAAQNAGTPLFSTPLYWQGYNGTPSNVSQAQQNPIPVQSPSMLSSPLTVQSHVN NPDLNSSPIMGLINASEPVNPVLSTITSSSSHSSVTGSFTPVQGSMYPNLPSCSSIKA SPPSQAAYTANRLSMSSFPSSFGDTNIPESQPIVKPVTSPAAADPLSVLPNPMPYPAW SSGSLLTSSPSLVTPGQLAQTRPHVLSSTQNTYPDHTIAVASLTSYTPSVNSTPVTQP PLLPLPAPAQQSLYSTTLYTEEFDFEAMNEKFKKDEVWGYLGKASQKDKAEGMEDDAS DHSLGDKQGFGLLAKFDTQPAYKKDDFFDTISCNSHSRGARNGQNRFSERMKLDSEVC " mobile_element complement(34083755..34083809) /note="source:scaffold_10_CACTA_0130 10797 10851" /mobile_element_type="transposon:TIR/CACTA" mRNA join(<34084101..34084130,34084907..34085007, 34085486..34085557,34085650..34086537,34086737..34086790, 34088034..34088231,34088317..34088427,34088535..34089048) /locus_tag="TCM_016705" /product="Decapping 5-like, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036888001" /inference="similar to AA sequence:frave:gene10946" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1404t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11969t1" CDS join(<34084103..34084130,34084907..34085007, 34085486..34085557,34085650..34086537,34086737..34086790, 34088034..34088231,34088317..34088427,34088535..34088687) /locus_tag="TCM_016705" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene10946" /codon_start=1 /product="Decapping 5-like, putative isoform 3" /protein_id="EOY25377.1" /db_xref="TAIR:AT5G45330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0P5" /translation="DDGLVSDLCVRSYGTEGRKKDGPQVPPSDKVYEYILFRGSDIKD LQVKSPPPVQIDEQINNDPAIIQSQFAGVPLSPFPSVSVGGRTLTESTQWQDNPALAS RVYPSALPTHQFSSQVYPSNYSLAAQNAGTPLFSTPLYWQGYNGTPSNVSQAQQNPIP VQSPSMLSSPLTVQSHVNNPDLNSSPIMGLINASEPVNPVLSTITSSSSHSSVTGSFT PVQGSMYPNLPSCSSIKASPPSQAAYTANRLSMSSFPSSFGDTNIPESQPIVKPVTSP AAADPLSVLPNPMPYPAWSSGSLLTSSPSLVTPGQLAQTRPHVLSSTQNTYPDHTIAV ASLTSYTPSVNSTPVTQPPLLPLPAPAQQEQNFRTEILSFAECLFRESLYSTTLYTEE FDFEAMNEKFKKDEVWGYLGKASQKDKAEGMEDDASDHSLGDKQGFGLLAKFDTQPAY KKDDFFDTISCNSHSRGARNGQNRFSERMKLDSETFGNFQQRSHVSYGPYRGYGAGRG QNYGGSYNWARGYGYGGRGCGQNMYP" gene complement(34089949..34091935) /locus_tag="TCM_016706" /note="dbxref CacaoGD:Thecc1EG016706" mRNA complement(join(34089949..34090631,34091204..34091403, 34091487..34091935)) /locus_tag="TCM_016706" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24320.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s24320.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15651t00001" CDS complement(join(34090346..34090631,34091204..34091403, 34091487..34091591)) /locus_tag="TCM_016706" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25380.1" /db_xref="Phytozome:POPTR_0004s24320.1" /db_xref="TAIR:AT1G31720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0P4" /translation="MGKHRVGFVLIFSAIASLGLVSFASCLVAEAKRPKKGDLKLDGK LCFLPTSRAFGFGVAALICLSIAQIIGNVAIWANCWWRGKARKAKKPFLTAILLAISW ISFGVAVILLSAAMSMSRTQPYGEGWLDGECYLVRDGVYISSGVLSLAALFALLGAAA MMITVDQVDQGQKVYAQNVDNKSSDRIAMFGESEAA" gene complement(34092136..34104435) /locus_tag="TCM_016707" /note="dbxref CacaoGD:Thecc1EG016707" mRNA complement(join(34092136..34092511,34092915..34095290, 34096881..34097150,34097537..34097804,34099892..34100180, 34100610..34101074,34101315..34101787,34104327..34104435)) /locus_tag="TCM_016707" /product="Long-chain fatty alcohol dehydrogenase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g35620.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s24310.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11945t1" CDS complement(join(34093434..34095290,34096881..34097150, 34097537..34097804,34099892..34100180,34100610..34101074, 34101315..34101588)) /locus_tag="TCM_016707" /codon_start=1 /product="Long-chain fatty alcohol dehydrogenase family protein" /protein_id="EOY25381.1" /db_xref="Phytozome:POPTR_0004s24310.1" /db_xref="TAIR:AT4G19380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0P3" /translation="MGRLINMHHLDTRHTKLVRMPLGMGKLKGLRVLTDFVFGEQNGS SISELGKLKNLRGRLAISNLQNVVCHRDAEDANLKEKINLKELQLIWRFAEVVTVGDE FYGHGAALSKPFGSLEILSFEDMPEWEEWFCLKDGAFCLSQELYMEDCPKITKSLPKH LPSLMKLKIERCGKLGGLLPMAPSMSKLDLNQCDALRLEPLPCGLRQLQIYKLNIKDS ILEQMERHYTHLEKLVIWNCYGLRSFLEGRIGVWKHPLHFQPSDGIYDAEEIEFFPDE HMLPSTTTGLDLYRPSSESYVFGLQGPSTPHLSSHIGYVGLSEAPIYASKDALQIVRC WKKLRKEGSMEENGVGRREEQTTMIELSTGIDIEKLPLWEEERQYRNCYVNSISSREM ESLTAICDAFLPSLHVSAADADAVATFYQSSASMAATPERVGGLLSERMEHPKKWMIR LALWLLSTWLGTFVLCGPRSLSTNFPFFHTFSQLSQQKREEILLSWSLSFFYHLRMLF KSTKLLTLLVFFSQVDEKNQNLSWKAIGYCGPDPEFQPQASRLKTSKQNGYGNFICKE QECKEDGEKEERYGPLCRGLINLKHPRDVVADNLLRFGLPVSVRPKKINPPNLSHPSL TIKCDAVIVGSGSGGGVVAGVLAKAGYKVLVLEKGNYFARSNLSLLEGPSMDQMYMSG GMLATDDMGVVILAGSTVGGGSTINWSASIKTPQHVINEWCDRCKLELFDSKLYKEAM DVVCEKMGVQSEIVEEGFNNAVLRKGCEELGYPVNDIPRNSPPDHYCGWCCMGCKDGR KKGTSETWLVDLVNSGNGVILPGCEAIKVLHKRRKGRGRNRATGIAFQLEYVGAKDIC IVESKVTIVACGALSTPPLLKRSGLKNANIGKNLHLHPVAMAWGYFPDAPLSSGWPEK EKKSYEGGIMTAMSTVVANMDKSGYGAVLQTPALHPGMFSALMPWLSGADMKRRMLRF SRTAHIFALARDKGSGDVYSPDSIGYKMEATDEENLKKGLDKILRILAAAGAEEIGTH HCKGKSINVKQASSHEFERFVKEESSRPLRDLNTQICSAHQMGSCRMGIDPKQSVVNQ MGETWEVEGLFVADSSVFPTALGVNPMVTIQAIAYCTAQSVLDVLKRKKSIY" mobile_element 34099017..34099093 /note="source:CACAO_M_E22186_F143_scaffold_3 9930 10007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34103509..34103710) /note="source:scaffold_9_CACTA_0936 455 660" /mobile_element_type="transposon:TIR/CACTA" gene complement(34104318..34104632) /locus_tag="TCM_016708" /note="dbxref CacaoGD:Thecc1EG016708" mRNA complement(34104318..34104632) /locus_tag="TCM_016708" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24290.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(34104363..34104626) /locus_tag="TCM_016708" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25382.1" /translation="MAYRPFMLSFFMFLLLQQHFHPISASRSLGFRAPSIPKDFLSKP SSPSNNLGRFTINRYKMIEADAFRPTSPGHSPGVGHNDPPPAS" gene complement(34106230..34109410) /locus_tag="TCM_016709" /note="dbxref CacaoGD:Thecc1EG016709" mRNA complement(join(34106230..34106398,34109154..34109410)) /locus_tag="TCM_016709" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage" CDS complement(join(34106302..34106398,34109154..34109404)) /locus_tag="TCM_016709" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25383.1" /translation="MILVEILSRQPYDVPVNCEYIYYIYRSSCFPNCGCPPMWAGSPL SSCVNPLGLNLEQQPKISQSMMDKRADLGISADKALFVSTITWYLAYKGSCIWLVGLR KSKGGEAPFQPCG" mobile_element complement(34106688..34106734) /note="source:scaffold_5_CACTA_0580 4710 4755" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34107858..34109016 /note="source:scaffold_5_CACTA_0614 1494 2654" /mobile_element_type="transposon:TIR/CACTA" gene complement(34110076..34112860) /locus_tag="TCM_016710" /note="dbxref CacaoGD:Thecc1EG016710" mRNA complement(join(34110076..34110607,34110925..34111067, 34111887..34111968,34112366..34112443,34112528..34112860)) /locus_tag="TCM_016710" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036893001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025512t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s24270.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09391t00001" CDS complement(join(34110401..34110607,34110925..34111067, 34111887..34111968,34112366..34112443,34112528..34112809)) /locus_tag="TCM_016710" /note="paralog of Thecc1EG025512t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25384.1" /db_xref="Phytozome:POPTR_0004s24270.1" /db_xref="TAIR:AT4G19390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJ29" /translation="MTPPSPSPSPFISKPLRTTTPRMQFYNYNISRKLGQNFKRVAKF EPHGAEFPVTKTSGRQIPLVALAATNSELDTGVFQSSPDKLEAIEEDIEKVIYRCRFM TLLAVFGSLTGSFLCFIKGCSYIITSFMEYFVDRGKVIFLLVEAIDVYLLGTVMLVFG MGLYELFVSNLDIAKSQSKEEVTSRSNLFGLFALKERPRWLEIKSVSEMKTKLGHVIV MLLLIGFFEKCKKAAIYSPVDLLCFSASVFLSSSCLFLLSKLNDS" gene 34114296..34116775 /locus_tag="TCM_016711" /note="dbxref CacaoGD:Thecc1EG016711" mRNA join(34114296..34114594,34114681..34116442) /locus_tag="TCM_016711" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019208t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03950.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1254t1; alternateUTRof:Thecc1EG016711t1; inference alignment:Newbler:10:TSA:cgbaB_g01777t00002" mRNA join(34114300..34114594,34114717..34116775) /locus_tag="TCM_016711" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019208t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03950.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01777t00002" CDS 34114727..34116202 /locus_tag="TCM_016711" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019208t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY25385.1" /db_xref="Phytozome:POPTR_0003s03950.1" /db_xref="TAIR:AT1G77360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVN8" /translation="MEAVAENHSTTLPTKPPNQPHSNSIPHNLQPQRFRTHLDAPDIS PTARILCDLLSRASPHDVETALSCTGITPTAEVIQEVLSFSYNQPSSAIKFFRWAGRY IKPSAYAWNLMVDLLGKNQIFEPMWDAIRSMKQESLLSVATFVSVFGSYCTVHRFSEA TMSFDVMDKYGVQQDVVAVNSLLSAICRQDNQMSVAIEFFDGIKKKIPPDGDTFAILL EGWEKEGNVAKAKNTFGEMVNRVGWSPMATSAYDAFLTTLVHGAQADEAVKFLQVMKG HNCLPGLRFFSNALDILVKQNDSTHIIPLWDTMVGGGLVPNLIMYNAVIGLVCNNNDM HNAFRFLDEMVFHGAFPDSLTYNMIFQCLVRNKRVHEVGKFFVEMIKNEWPPTSSNCV MAIKMLLENDDPEMAIDIWNYMVENCVSPLVESANELLIGLSNLGRLSWVERFAEEML DKRINLFESTMEKLKNAFFKEGRTLRDKYDSLSRRWKVAQM" CDS 34114727..34116202 /locus_tag="TCM_016711" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019208t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY25386.1" /db_xref="Phytozome:POPTR_0003s03950.1" /db_xref="TAIR:AT1G77360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVN8" /translation="MEAVAENHSTTLPTKPPNQPHSNSIPHNLQPQRFRTHLDAPDIS PTARILCDLLSRASPHDVETALSCTGITPTAEVIQEVLSFSYNQPSSAIKFFRWAGRY IKPSAYAWNLMVDLLGKNQIFEPMWDAIRSMKQESLLSVATFVSVFGSYCTVHRFSEA TMSFDVMDKYGVQQDVVAVNSLLSAICRQDNQMSVAIEFFDGIKKKIPPDGDTFAILL EGWEKEGNVAKAKNTFGEMVNRVGWSPMATSAYDAFLTTLVHGAQADEAVKFLQVMKG HNCLPGLRFFSNALDILVKQNDSTHIIPLWDTMVGGGLVPNLIMYNAVIGLVCNNNDM HNAFRFLDEMVFHGAFPDSLTYNMIFQCLVRNKRVHEVGKFFVEMIKNEWPPTSSNCV MAIKMLLENDDPEMAIDIWNYMVENCVSPLVESANELLIGLSNLGRLSWVERFAEEML DKRINLFESTMEKLKNAFFKEGRTLRDKYDSLSRRWKVAQM" gene complement(34117171..34118470) /locus_tag="TCM_016712" /note="dbxref CacaoGD:Thecc1EG016712" mRNA complement(join(34117171..34118056,34118140..34118470)) /locus_tag="TCM_016712" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.29 coverage" CDS complement(join(34117928..34118056,34118140..34118223)) /locus_tag="TCM_016712" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25387.1" /translation="MPIHLISGYSPLRDTKKCSENSKPVPTGPKNQLNPHSLPIDEIS GQSEPSISLALAINSPHIEIVKALAE" mobile_element complement(34118257..34118445) /note="source:INTACT805_F19_scaffold_8-int 356 548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34118433..34119703) /note="source:scaffold_10_CACTA_0130 6562 7873" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34119700..34119929) /note="source:scaffold_10_CACTA_0130 7927 8155" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34119926..34120246) /note="source:INTACT805_F19_scaffold_8-int 1 369" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 34121204..34121990 /locus_tag="TCM_016713" /note="dbxref CacaoGD:Thecc1EG016713" mRNA 34121204..34121990 /locus_tag="TCM_016713" /product="Root, flower, group 2, putative" /inference="alignment:exonerate-protein:2:frave:gene22013" /inference="similar to AA sequence:ricco:29827.m002641" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01110t00002" CDS 34121219..34121836 /locus_tag="TCM_016713" /note="dbxref ricco:29827.m002641" /codon_start=1 /product="Root, flower, group 2, putative" /protein_id="EOY25388.1" /db_xref="TAIR:AT5G45320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S1Q9" /translation="MPKSNVVTQRSIQKERRTHPLVWCAAIICTILIVAVIIAGIVTF IGYLVIHPRVPYISVANAHLDRIQIDYAGVLEIQVTIVVRAQNGNKKAHASFSDSSYI LSLNGEDLARLVAGPFEVVKNSSVDFHYVVQSSPIPLDPEQADDVDAALKKDLITFDL KGKTKARWRVGLLGSIKFECHLSCQLHFHVFNGTFIPSRCTSKAK" gene 34123311..34126846 /locus_tag="TCM_016714" /note="dbxref CacaoGD:Thecc1EG016714" mRNA join(34123311..34123458,34124417..34124744, 34125274..34125453,34125971..34126846) /locus_tag="TCM_016714" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036901001" /inference="similar to AA sequence:Phytozome:GSVIVT01036901001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01850t00002; alternateUTRof:Thecc1EG016714t1; inference alignment:Newbler:10:TSA:cgbaB_g01850t00001" mRNA join(34123356..34123458,34123920..34124052, 34124417..34124744,34125274..34125453,34125971..34126846) /locus_tag="TCM_016714" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036901001" /inference="similar to AA sequence:Phytozome:GSVIVT01036901001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01850t00001; inference alignment:Newbler:10:TSA:cgbaB_g01850t00001" CDS join(34124490..34124744,34125274..34125453, 34125971..34126645) /locus_tag="TCM_016714" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25389.1" /db_xref="Phytozome:GSVIVT01036901001" /db_xref="TAIR:AT5G45310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0N6" /translation="MAGLVELIPKLRNSLTIMVTMPFSLCKLAFKFCTKTIFIVIQTW VELVKAAVSFHVNMFWKAVIWMVALVSIPVRVLTALQRERLLEQHLHEMQFELENLVW DRKELEDHLQAAVRERRIMESMLIELEEEHDKAVAKIELLVGELQDLKDENLRLKEIR GKAAWSLKGHDETIKSKSINTVDDHVIPYNIASWISSYKGSGISFQDLMMNREGREGK SKSNTGSFNFLKASPAPSGSVSVQPLTPIVIPNLDVNAVLEQRREIALSQTLFSAILS LLVGMIVWEAEDPCMPLVVALFTVVGMSLRSVTEFFFTIKNKPASDAVALLSFNWFIL GTLSYPSLPRVIRMLAPLGLILVDHIASWLGISFN" CDS join(34124490..34124744,34125274..34125453, 34125971..34126645) /locus_tag="TCM_016714" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25390.1" /db_xref="Phytozome:GSVIVT01036901001" /db_xref="TAIR:AT5G45310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0N6" /translation="MAGLVELIPKLRNSLTIMVTMPFSLCKLAFKFCTKTIFIVIQTW VELVKAAVSFHVNMFWKAVIWMVALVSIPVRVLTALQRERLLEQHLHEMQFELENLVW DRKELEDHLQAAVRERRIMESMLIELEEEHDKAVAKIELLVGELQDLKDENLRLKEIR GKAAWSLKGHDETIKSKSINTVDDHVIPYNIASWISSYKGSGISFQDLMMNREGREGK SKSNTGSFNFLKASPAPSGSVSVQPLTPIVIPNLDVNAVLEQRREIALSQTLFSAILS LLVGMIVWEAEDPCMPLVVALFTVVGMSLRSVTEFFFTIKNKPASDAVALLSFNWFIL GTLSYPSLPRVIRMLAPLGLILVDHIASWLGISFN" gene 34130660..34134701 /locus_tag="TCM_016715" /note="dbxref CacaoGD:Thecc1EG016715" mRNA join(34130660..34130965,34134092..34134701) /locus_tag="TCM_016715" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1162t2" CDS 34134111..34134305 /locus_tag="TCM_016715" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25391.1" /translation="MSYNRGMLIALMTDAKEGPGTRILGWWLTFEMMPFYFNLENNKV PFMLAPGGFFPIELLYTIGY" gene 34135025..34144101 /locus_tag="TCM_016716" /note="dbxref CacaoGD:Thecc1EG016716" mRNA join(34135025..34135582,34135888..34135926, 34136835..34136963,34137511..34137654,34140699..34141088, 34141756..34141910,34141998..34142072,34142149..34142418, 34142782..34143129,34143484..34144065) /locus_tag="TCM_016716" /product="RHO guanyl-nucleotide exchange factor 14 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036908001" /inference="similar to AA sequence:Phytozome:POPTR_0001s00940.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00792t00001" mRNA join(34135445..34135582,34137511..34137654, 34140699..34141088,34141756..34141910,34141998..34142072, 34142149..34142418,34142782..34143129,34143484..34144101) /locus_tag="TCM_016716" /product="RHO guanyl-nucleotide exchange factor 14 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036908001" /inference="similar to AA sequence:Phytozome:POPTR_0001s00940.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12041t2; alternateUTRof:Thecc1EG016716t2; inference alignment:Newbler:10:TSA:cgbaL_g00792t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10447t1" CDS join(34135923..34135926,34136835..34136963, 34137511..34137654,34140699..34141088,34141756..34141910, 34141998..34142072,34142149..34142418,34142782..34143129, 34143484..34143870) /locus_tag="TCM_016716" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RHO guanyl-nucleotide exchange factor 14 isoform 1" /protein_id="EOY25392.1" /db_xref="Phytozome:POPTR_0001s00940.1" /db_xref="TAIR:AT1G31650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H059" /translation="MAFDLKPPSTSLSFTKCSFDSFQTLKPRHSRAITQRILLALTHS ERHREREREREEIKKKVKGNRRKMMLMRKRLVCCTRDREISLDFDEQDRIMTYNGLES CILNNESYENESRTSRGDGCASDSLDDDFSSCSSSKDAFGSFSSKWMTMKRDEQGSDE WELSESPKKFYAKEKPAYAIQFSDIETMKEKFSKLLLGEDITGGRKGVSTALALSNAI TNLAASVFGELWKLEPLAEERKNKWRREMDWLLSPTNYMVELVPAKQSGANGRTMEIM TPKARADIHMNLPALQKLDSMLIETLESMVNTEFWYAEVGSRAEGRNKSAKESKRWWL PLPQVPKTGLSDTERKKLQCKGKVVHQVFKAAKSINENVLLEMPVPSIIRDALPKSAK ANLSDDLYKVLTMESSSVEDMFISLNLKSEHNALEPINRLEAAVFAWKERIAEQASGK SPVRTSWSFIKDPISEMDKMELLLDRAEALVQQIKSTYPNLPQTFLDATKIQYGKDVG HSILEAYSRVLRNLAFSIMSRIGEILQEDTLSNPNSPVATLCFPGMNMKGNLQTPACG PRARQSLIDQMNRADGKYCDSDSSSYSEREVSYNEARRSCVNATPSRSRVWCIGKEAC IGVSPRNSP" mRNA join(34136699..34136963,34137511..34137654, 34140699..34141088,34141756..34141910,34141998..34142072, 34142149..34142418,34142782..34143129,34143484..34144065) /locus_tag="TCM_016716" /product="RHO guanyl-nucleotide exchange factor 14 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036908001" /inference="similar to AA sequence:Phytozome:POPTR_0001s00940.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00792t00001; inference alignment:Newbler:10:TSA:cgbaL_g00792t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10447t1" CDS join(34137579..34137654,34140699..34141088, 34141756..34141910,34141998..34142072,34142149..34142418, 34142782..34143129,34143484..34143870) /locus_tag="TCM_016716" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RHO guanyl-nucleotide exchange factor 14 isoform 2" /protein_id="EOY25393.1" /db_xref="Phytozome:POPTR_0001s00940.1" /db_xref="TAIR:AT1G31650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H059" /translation="MMLMRKRLVCCTRDREISLDFDEQDRIMTYNGLESCILNNESYE NESRTSRGDGCASDSLDDDFSSCSSSKDAFGSFSSKWMTMKRDEQGSDEWELSESPKK FYAKEKPAYAIQFSDIETMKEKFSKLLLGEDITGGRKGVSTALALSNAITNLAASVFG ELWKLEPLAEERKNKWRREMDWLLSPTNYMVELVPAKQSGANGRTMEIMTPKARADIH MNLPALQKLDSMLIETLESMVNTEFWYAEVGSRAEGRNKSAKESKRWWLPLPQVPKTG LSDTERKKLQCKGKVVHQVFKAAKSINENVLLEMPVPSIIRDALPKSAKANLSDDLYK VLTMESSSVEDMFISLNLKSEHNALEPINRLEAAVFAWKERIAEQASGKSPVRTSWSF IKDPISEMDKMELLLDRAEALVQQIKSTYPNLPQTFLDATKIQYGKDVGHSILEAYSR VLRNLAFSIMSRIGEILQEDTLSNPNSPVATLCFPGMNMKGNLQTPACGPRARQSLID QMNRADGKYCDSDSSSYSEREVSYNEARRSCVNATPSRSRVWCIGKEACIGVSPRNSP " CDS join(34137579..34137654,34140699..34141088, 34141756..34141910,34141998..34142072,34142149..34142418, 34142782..34143129,34143484..34143870) /locus_tag="TCM_016716" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RHO guanyl-nucleotide exchange factor 14 isoform 2" /protein_id="EOY25394.1" /db_xref="Phytozome:POPTR_0001s00940.1" /db_xref="TAIR:AT1G31650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H059" /translation="MMLMRKRLVCCTRDREISLDFDEQDRIMTYNGLESCILNNESYE NESRTSRGDGCASDSLDDDFSSCSSSKDAFGSFSSKWMTMKRDEQGSDEWELSESPKK FYAKEKPAYAIQFSDIETMKEKFSKLLLGEDITGGRKGVSTALALSNAITNLAASVFG ELWKLEPLAEERKNKWRREMDWLLSPTNYMVELVPAKQSGANGRTMEIMTPKARADIH MNLPALQKLDSMLIETLESMVNTEFWYAEVGSRAEGRNKSAKESKRWWLPLPQVPKTG LSDTERKKLQCKGKVVHQVFKAAKSINENVLLEMPVPSIIRDALPKSAKANLSDDLYK VLTMESSSVEDMFISLNLKSEHNALEPINRLEAAVFAWKERIAEQASGKSPVRTSWSF IKDPISEMDKMELLLDRAEALVQQIKSTYPNLPQTFLDATKIQYGKDVGHSILEAYSR VLRNLAFSIMSRIGEILQEDTLSNPNSPVATLCFPGMNMKGNLQTPACGPRARQSLID QMNRADGKYCDSDSSSYSEREVSYNEARRSCVNATPSRSRVWCIGKEACIGVSPRNSP " gene 34144220..34147967 /locus_tag="TCM_016717" /note="dbxref CacaoGD:Thecc1EG016717" mRNA join(34144220..34144685,34145061..34145374, 34145475..34145570,34145705..34145791,34146390..34146515, 34146729..34147007,34147400..34147465,34147577..34147671) /locus_tag="TCM_016717" /product="RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036908001" /inference="similar to AA sequence:Phytozome:GSVIVT01036908001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08190t00001" mRNA join(34144899..34145374,34145475..34145570, 34145705..34145791,34146390..34146515,34146729..34147007, 34147400..34147465,34147577..34147967) /locus_tag="TCM_016717" /product="RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036908001" /inference="similar to AA sequence:Phytozome:GSVIVT01036908001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12076t4; alternateUTRof:Thecc1EG016717t1; inference alignment:Newbler:10:TSA:cgbaB_g08190t00001" CDS join(34145069..34145374,34145475..34145570, 34145705..34145791,34146390..34146515,34146729..34147007, 34147400..34147465,34147577..34147633) /locus_tag="TCM_016717" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1" /protein_id="EOY25395.1" /db_xref="Phytozome:GSVIVT01036908001" /db_xref="TAIR:AT1G31600.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I9F8" /translation="MVLPRFVRPKEGDGESSPNLFVANCGPAVGLSYDTIASVFSSFG EVIGVYAADESGARVIISFLESTSAHSAFKALNGQPCPPLGGRSLHIRHSILQPPSSR VNDSVPVSLIASDLNIPGLYLFHDFISAKEEEELLQAVDNRPWKSLSKRRVQHYGYEF CYDTRNVDPKQHLGALPSFVSFILKRVSSFPNINDPADLDLDQLTVNEYPPGVGLSPH IDTHSAFKGLIFSLSLAGPCVMEFRRYTAGSWALKTEVKVENPDSCTELSRKAIYLPP RSMLFLSGEARYAWHHYIPHHKIDKVKETAIRRGSRRVSFTFRKVRTGPCQCEFPQYC DSQG" CDS join(34145069..34145374,34145475..34145570, 34145705..34145791,34146390..34146515,34146729..34147007, 34147400..34147465,34147577..34147633) /locus_tag="TCM_016717" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1" /protein_id="EOY25396.1" /db_xref="Phytozome:GSVIVT01036908001" /db_xref="TAIR:AT1G31600.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I9F8" /translation="MVLPRFVRPKEGDGESSPNLFVANCGPAVGLSYDTIASVFSSFG EVIGVYAADESGARVIISFLESTSAHSAFKALNGQPCPPLGGRSLHIRHSILQPPSSR VNDSVPVSLIASDLNIPGLYLFHDFISAKEEEELLQAVDNRPWKSLSKRRVQHYGYEF CYDTRNVDPKQHLGALPSFVSFILKRVSSFPNINDPADLDLDQLTVNEYPPGVGLSPH IDTHSAFKGLIFSLSLAGPCVMEFRRYTAGSWALKTEVKVENPDSCTELSRKAIYLPP RSMLFLSGEARYAWHHYIPHHKIDKVKETAIRRGSRRVSFTFRKVRTGPCQCEFPQYC DSQG" gene complement(34148025..34149582) /locus_tag="TCM_016718" /note="dbxref CacaoGD:Thecc1EG016718" mRNA complement(join(34148025..34148507,34148639..34148767, 34149200..34149333,34149430..34149582)) /locus_tag="TCM_016718" /product="60S ribosomal protein L13" /inference="alignment:exonerate- protein:2:ricco:30071.m000428" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002060t1" /inference="similar to AA sequence:Phytozome:GSVIVT01027212001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc20t12" CDS complement(join(34148286..34148507,34148639..34148767, 34149200..34149333,34149430..34149538)) /locus_tag="TCM_016718" /note="paralog of Thecc1EG002060t1" /codon_start=1 /product="60S ribosomal protein L13" /protein_id="EOY25397.1" /db_xref="Phytozome:GSVIVT01027212001" /db_xref="TAIR:AT3G49010.4" /db_xref="UniProtKB/TrEMBL:UniRef50_C6SYZ4" /translation="MVKHNNVVPNGHFRKHWQNYVKTWFNQPARKARRRLARQKKAVK IFPRPSAGHLRPIVHGQTLKYNMKLRAGRGFSLEELKAAGISKKLAPTIDTAVDHRRK NRSLESLQANVQRLKTCKAKLVAGDSTPEELATATQVQGPYIPIAGDKPSVELVKVTE EMKSFKAYNKLRVERMNERHIGARMKKAAEAEQEEKK" gene complement(34149892..34157365) /locus_tag="TCM_016719" /note="dbxref CacaoGD:Thecc1EG016719" mRNA complement(join(34149892..34150349,34150902..34151121, 34151807..34152019,34152495..34152755,34153876..34154040, 34154351..34154545,34154923..34155126,34155256..34155336, 34155677..34155901,34156592..34157365)) /locus_tag="TCM_016719" /product="Beta-amylase 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036911001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005336t1" /inference="similar to AA sequence:Phytozome:GSVIVT01036911001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12100t1" CDS complement(join(34150321..34150349,34150902..34151121, 34151807..34152019,34152495..34152755,34153876..34154040, 34154351..34154545,34154923..34155126,34155256..34155336, 34155677..34155901,34156592..34157014)) /locus_tag="TCM_016719" /note="paralog of Thecc1EG005336t1" /codon_start=1 /product="Beta-amylase 2" /protein_id="EOY25398.1" /db_xref="Phytozome:GSVIVT01036911001" /db_xref="TAIR:AT5G45300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H060" /translation="MQNPQSSTNANQDPTIEPQPQPQPRRPRGFAATAAAAAASVSPT GTPSGTAAASTGSSTGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPAR ADMNDVLAALAREAGWTVEPDGTTYRLRHSPPPQHHQHLGAFPVRSVESPISASSLKS CSVKATLDCQPPVVRIDESLSPASLDSVVIAERDTRSEKYPSTSPINSVECLEADQLI QDVHSGEHENDFTGTQYVPVFIKLSTGVINNFCQLADPEGVRQVLSHMKSLNVDGVVV DCWWGIVEGWNPQKYVWSGYRELFNVIQEFKMKIQVVMAFHEYGRTDTAELLISLPQW ILEIGKENQDIFFTDREGRRTTECLSWGIDKERVLNGRTGIEVYFDFMRNFRTEFDDL FAEGLFSAVEIGLGPSGELRYPSFSERMGWRYPGIGEFQCYDKYLQQNLRKAAKLRGH SFWARGPDNAGQYNSRPHETGFFCERGDYDSYYGRFFLHWYAQSLTDHADNVLSLASL AFEETKIIVKVPAIYWWYKTSSHAAEVTAGYYNPTNQDGYSPVFEVLKKHSVTIKFVC SGLQVCSYESDEAFADPEGLSWQVLNSAWDRGLTVAGENTLSCFDREGCLRIIETAKP RNDPDHRHFSFFVYQQPSPLVEGVICFLDLDYFIKCMHGDITGDLVP" mobile_element complement(34157413..34157491) /note="source:CACAO_on_E1_scaffold_1 74 152" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(34157416..34157511) /note="source:INTACT1373F_F385_scaffold_8-int 6913 6986" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 34157420..34163847 /locus_tag="TCM_016720" /note="dbxref CacaoGD:Thecc1EG016720" mRNA join(34157420..34157429,34158154..34158916, 34158996..34159871,34160175..34160369,34160468..34160622, 34161691..34161801,34163224..34163847) /locus_tag="TCM_016720" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G45290.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s00920.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10442t1" CDS join(34158734..34158916,34158996..34159871, 34160175..34160369,34160468..34160622,34161691..34161801, 34163224..34163284) /locus_tag="TCM_016720" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY25399.1" /db_xref="Phytozome:POPTR_0001s00920.1" /db_xref="TAIR:AT5G45290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H061" /translation="MGSGGSKGSCRGGGAASASASSSSSSSSGGRRGRSKGKSRVFQS SCLGAPSGSADPDFDHQVLDQRNKGYASNFTNLNRNLRESEPESDEVKRECYRKVKGE AASDDEMPMPCISSSDVDIGASRSGSSSGRAAAAASSAHHSPSRCLSGFSFLPGNVSF RLSRANSLGSSRAYPVSPTSIAMLNHDDNSGTVEPQQLPHNSSSARNANLHSPIIFND ADRDRDRDRRVGVGSREPVERNVRFSRTLSVGRLRDRVLRRASLSDLTFCPLQQDRQL TNQTQALGGDRDTRHSATPSSTTTNTSAHTPSIISHNSIFNIQDHEVETSRSREARYH DLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGRCTCRVNNR DSNSNDDTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVE SLPVKVYTKSHKLQNDEAAQCYICLVEYEEGDSMRILPCNHEFHRACIDKWLKEIHRV CPLCRGDICRPDSLPAEN" gene complement(34163989..34167432) /locus_tag="TCM_046748" /note="dbxref CacaoGD:Thecc1EG046748" mRNA complement(join(34163989..34164649,34164776..34164885, 34165012..34165126,34166080..34166189,34166875..34166944, 34167032..34167432)) /locus_tag="TCM_046748" /product="Profilin family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g43640.1" /inference="similar to AA sequence:Phytozome:GSVIVT01036913001" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06586t00001" CDS complement(join(34164801..34164885,34165012..34165126, 34166080..34166189,34166875..34166944,34167032..34167095)) /locus_tag="TCM_046748" /codon_start=1 /product="Profilin family protein" /protein_id="EOY25400.1" /db_xref="Phytozome:GSVIVT01036913001" /db_xref="TAIR:AT4G19400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LFG8" /translation="MDWAFVQKSWDKWASSNIGSSGEPLKAALLINYDPLRPSRLLST IAEQEGIKINPIELSQFVSFIKRNKLQTETFNIGHNQYMVTSIQENWFCARCLNTSKS TGEGAIVMQTSTFLLVALYDGSIGSASRAMVSVDQLVWLLSRRNL" mobile_element complement(34167484..34167610) /note="source:scaffold_2_CACTA_0244 14575 14711" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34167501..34167669) /note="source:CACAO_on_E732_scaffold_9 3722 3926" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(34167533..34168564) /note="source:INTACT135F_F90_scaffold_2-int 12862 13928" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(34169088..34173756) /locus_tag="TCM_046749" /note="dbxref CacaoGD:Thecc1EG046749" mRNA complement(join(34169088..34169214,34169330..34169475, 34169636..34169741,34170246..34170323,34170448..34170507, 34170683..34170743,34170865..34170989,34171085..34171171, 34171258..34171331,34171424..34171553,34171739..34171821, 34171943..34172084,34173478..34173756)) /locus_tag="TCM_046749" /product="Pectinacetylesterase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016723t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s24210.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc546t10_C2" CDS complement(join(34169089..34169214,34169330..34169475, 34169636..34169741,34170246..34170323,34170448..34170507, 34170683..34170743,34170865..34170989,34171085..34171171, 34171258..34171331,34171424..34171553,34171739..34171821, 34171943..34172066)) /locus_tag="TCM_046749" /note="paralog of Thecc1EG016723t1" /codon_start=1 /product="Pectinacetylesterase family protein" /protein_id="EOY25401.1" /db_xref="Phytozome:POPTR_0004s24210.1" /db_xref="TAIR:AT4G19410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FH82" /translation="MLGARLGQWLSLLVCCLLILLKAEGGSVGITYLQSAVAKGAVCL DGSPPAYHFDPGSGAGVNNWLVHMEGGGWCEDVERCLSRRNTDLGSSEQMVKQFGFSG LLSSQQKSNPDFYNWNRIKVRYCDGSSFTGDVEAPVNNLFFRGNRIWEAIIEDLLAKG MRNAKNAILSGCSAGGLASILHCDRFRALLPAATKVKCISDAGFFIHAKDVSGGQHIE NFYSQVAKLHGSVKSLPASCTSRMSMKPELCFFPQYVVQTMQTPIFFINAAYDSWQIK NILAPTAADSGKAWKSCKLDLKKCTPGQLKIIQDFRAQFLSALTGAGNSSSRGMFIDS CYAHCQAGKQITWSSNNSPAVGNTKIAKAVGDWYYERSPVQKIDCPYPCNPTCQNTDS ESQLPDI" gene 34172761..34173787 /locus_tag="TCM_016722" /note="dbxref CacaoGD:Thecc1EG016722" mRNA join(34172761..34173348,34173478..34173787) /locus_tag="TCM_016722" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc479t16" CDS join(34172926..34173348,34173478..34173543) /locus_tag="TCM_016722" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25402.1" /translation="MANTESATGTTSPPFVLQILEKHLWYERNKIKGHGSKSLHLIHY FVLRVKNNNIEPFVPNITMLFIQKPIRFSIGPGPEQQHGTRQTFRSPELKQRDGKLFH SKDHTIVLHLHRFSLASLSACLCHPHPAPMARKDDSKLVLEGGERRNKTYTVQLETLT TS" gene complement(34173989..34178735) /locus_tag="TCM_016723" /note="dbxref CacaoGD:Thecc1EG016723" mRNA complement(join(34173989..34174777,34174874..34175019, 34175186..34175291,34176396..34176473,34176549..34176602, 34176772..34176832,34176938..34177062,34177170..34177256, 34177354..34177433,34177539..34177668,34177891..34177973, 34178058..34178179,34178623..34178735)) /locus_tag="TCM_016723" /product="Pectinacetylesterase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046749t1" /inference="similar to AA sequence:Phytozome:GSVIVT01036914001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g11992t3" CDS complement(join(34174643..34174777,34174874..34175019, 34175186..34175291,34176396..34176473,34176549..34176602, 34176772..34176832,34176938..34177062,34177170..34177256, 34177354..34177433,34177539..34177668,34177891..34177973, 34178058..34178178)) /locus_tag="TCM_016723" /note="paralog of Thecc1EG046749t1" /codon_start=1 /product="Pectinacetylesterase family protein" /protein_id="EOY25403.1" /db_xref="Phytozome:GSVIVT01036914001" /db_xref="TAIR:AT4G19420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FH82" /translation="MVDTRSCQWLHLLVLGLLWFKTQGVYVPITYVQSAVAKGAVCLD GSPPAYHWDRGYGTGINSWLIQLEGGGWCNNVTSCLVRKNTHLGSSKRMVKQIPFSGI LNNKHQFNPDFYNWNRVKVRYCDGSSFTGDVAAVNPVTNLHFRGARVWLAVMEDLLAK GMRNAENAVLSGCSAGGLASILHCDSFPALLPMGTKVKCLSDAGYFINAKDVSGGHYI EAFFNQLVATHGSAKNLLPSCTSRMRPGLCFFPEYMAQQIQTPLFFINAAYDSWQIRN ILAPGIADPRGYWESCKLDIKNCLPSQIKTMQDFRLQFLVALLRLGKSSSRGMFIDSC YAHCQTEMQGLWLMPDSPLLNKTSIAKAVGDWFYDRNPFQKIDCAYPCNPTCHNRIYE QPAHHYPNL" mobile_element 34179216..34179609 /note="source:CACAO_MITE_S71_scaffold_3 1 418" /mobile_element_type="transposon:TIR/MITE" gene 34182091..34185883 /locus_tag="TCM_046750" /note="dbxref CacaoGD:Thecc1EG046750" mRNA join(34182091..34182193,34182334..34182493, 34182626..34182675,34182810..34182879,34183059..34183180, 34183558..34183691,34184362..34184512,34184631..34184778, 34184859..34185883) /locus_tag="TCM_046750" /product="DNAse I-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036916001" /inference="similar to AA sequence:Phytozome:GSVIVT01036916001" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc942t1" CDS join(34182117..34182193,34182334..34182493, 34182626..34182675,34182810..34182879,34183059..34183180, 34183558..34183691,34184362..34184512,34184631..34184778, 34184859..34185167) /locus_tag="TCM_046750" /codon_start=1 /product="DNAse I-like superfamily protein" /protein_id="EOY25404.1" /db_xref="Phytozome:GSVIVT01036916001" /db_xref="TAIR:AT1G31500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MS41" /translation="MLVRFRTLTLTGRQRPPVPSITRCVSSSNMSVNMTTGGSSSKSA PIIREFVDVEGGDIRSRGQSDGIRFRLVSYNILAQAYVKSSLFPHSPSPSLRWKARSQ AILTLLKNLGADFFCLQEVDEYDSFYKRNMADHGYSSIYVQRSGQKRDGCGIFYKNNC AELLAKETIEYNDLVDLLLDETSLSADKQNETLADGNNGAHAMNDSPVKSSPECRGDP NDPHVRLKRDCVGIMAAFRLKDPFHHVVILANTHLYWDPEWADVKLAQAKYLLSRLAQ FKTLVTDKFECTPSLILSGDFNSTPGDKVYQYLISGNSSSASLMTCLEELPFPLCSVH AFTRGEPPFTNCTPDFTNTLDYIFFSPSDCLKRVSILELPELDSPDVVGGLPNYSHPS DHLPIGAEFEITKE" mobile_element 34183409..34183536 /note="source:scaffold_10_CACTA_0127 10152 10244" /mobile_element_type="transposon:TIR/CACTA" gene 34187325..34188956 /locus_tag="TCM_046751" /note="dbxref CacaoGD:Thecc1EG046751" mRNA 34187325..34188956 /locus_tag="TCM_046751" /product="HXXXD-type acyl-transferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01020.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01020.1" /note="quality class is strong-expertchoice, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS 34187413..34188765 /locus_tag="TCM_046751" /codon_start=1 /product="HXXXD-type acyl-transferase family protein" /protein_id="EOY25405.1" /db_xref="Phytozome:POPTR_0001s01020.1" /db_xref="TAIR:AT1G31490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUF8" /translation="MLIASSALPTDQMEVNFTKKSIVKAFNLLPERHHKLITLSNLDL LSGRFPVTYLYFYHRPSINNLSSTVESLKSSLAETLSYYYPFAGRITEDPDTSEPIII CDNTGALLVEAQANIPLRKLDLYNINDSLQGKLVSTDPNFPLQVQVTHYTCGGVSMTF TFDHALGDASAFGNFLSSWSQVARKMPLSCIPDHGRNLRPRLPPTYRPCLDQTFVKCT LEEIRNIPKTNILLKRLYYVDASSINKLQSLACADGNKRTKIEAFSAYIWKVMVTTID KSHAKCKMGWLVDGRGRLNGSMSNYIGNVLSVAIEEASIVEIKQGSISEIANNVHEAI SKVANEEHFLDLIDWIECHKPGLMLPKVVLGRGGPALVLSSGRRFPVAELDFGFGSPV LGTVSSIIEKSGVGYMNQRPSARSDGSWIVSAIIWPELAAALESDSVFQPLCASHLQI " gene complement(34189136..34190462) /locus_tag="TCM_016725" /note="dbxref CacaoGD:Thecc1EG016725" mRNA complement(join(34189136..34189840,34189963..34190086, 34190345..34190462)) /locus_tag="TCM_016725" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(join(34189700..34189840,34189963..34190049)) /locus_tag="TCM_016725" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25406.1" /translation="MKWLVRGCYDLLASWKKMLGITTSVKTFSELFLQEFKFQVSQSS CSLCKMGVRGILFGGLPCVDGEIMNHLPVNQ" gene complement(34190006..34195763) /locus_tag="TCM_016726" /note="dbxref CacaoGD:Thecc1EG016726" mRNA complement(join(34190006..34190086,34190345..34190728, 34191952..34192089,34192196..34192255,34192379..34192431, 34192603..34195504)) /locus_tag="TCM_016726" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="similar to AA sequence:Phytozome:GSVIVT01036918001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1205t1_C2; alternateUTRof:Thecc1EG016726t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1218t10" mRNA complement(join(34190006..34190086,34190345..34190697, 34191952..34192255,34192379..34192431,34192603..34195504)) /locus_tag="TCM_016726" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="similar to AA sequence:Phytozome:GSVIVT01036918001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1205t3_C2; alternateUTRof:Thecc1EG016726t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1218t10" mRNA complement(join(34190006..34190086,34190345..34190728, 34191952..34192255,34192379..34192431,34192603..34195504)) /locus_tag="TCM_016726" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="similar to AA sequence:Phytozome:GSVIVT01036918001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1205t9_C2; alternateUTRof:Thecc1EG016726t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1218t10" mRNA complement(join(34190566..34190728,34191952..34192089, 34192167..34192255,34192379..34192431,34192603..34195510)) /locus_tag="TCM_016726" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="similar to AA sequence:Phytozome:GSVIVT01036918001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1218t10" mRNA complement(join(34191551..34191794,34191952..34192255, 34192379..34192431,34192603..34195504)) /locus_tag="TCM_016726" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="similar to AA sequence:Phytozome:GSVIVT01036918001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1218t8; alternateUTRof:Thecc1EG016726t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1218t10" mRNA complement(join(34191952..34192089,34192379..34192431, 34192603..34195763)) /locus_tag="TCM_016726" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="similar to AA sequence:Phytozome:GSVIVT01036918001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1969t2; alternateUTRof:Thecc1EG016726t1; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1218t10" CDS complement(34192709..34195246) /locus_tag="TCM_016726" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY25407.1" /db_xref="Phytozome:GSVIVT01036918001" /db_xref="TAIR:AT4G19440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H052" /translation="MDLRRLAVNKPIYIYTPITRPLTCVTSTTSAAAAAQQFNPQQQP QPPLNLTDSDSSNDSNNNNNQGLLGRLSCILSKSSLDSSKCKQLLPLLSPLDFDRFFS AISSHLNPKTTLHFFYLASQSFNFRFTLRSYCILILLLLLANHSSPARLLFIRLIDGK LPLSSPNNTTIDHIQITTALADLNTLSKGVPRVMGVDMLLHLYCTQFKNAGFTSAIDV FFTLADKGMFPSSKTCNFFLSSLVKANELQKTYQVFETLSRFVSLDVYLCTTMINAFC KGGRIQDAFALFSRMENLGIAPNVVTYNNIIHGLCKSGRLDEAFQLKQNMTRHGVQPN LITFSVLINGLIKLNKFEEANFVLKEMSGKGFVPNEVVYNTLIDGYCKMGNIDEALGV RDEMLSKGMIPNSVTLNSLVQGLCRTGQMEHAEHLLEEMLSIGLSINLGAFSSVIHWL CMKSRFDSALHFTRKMLLKNLRPNDRLITTLVGGLCKDGKHSEAIELWFKLFEKGFAA NTVTSNALLHGLYEAGKMQEAIRLLKEMIQSGLVLDRVSYNTLILGWCKAGKVEEAFR LKEEMFKRGIQPDIYTYNLLLHGISNMGKMKDATNIWDECKRHGIVSNVYTYAIMMDG YCKVDKIEECQNLFDELVTNKVDLNAVVYNTLIRAYCKNGNIMAAFKLHDDMKSKGIP PTICTYSSLIHGLCNMGLPEDARQLLLEMRGLGLVPNVVCYTALLGGYCRLGQMDKVG SLLQEMSSSNVQPNKITYTVMIDGYCKLGNMKEAGKLLCLMVKNGIVPDVVTYNAFTN GLCKEGRVEDAFKVCDHMASEGLPLDEITYTTLIHEWHLPSAWSNQE" CDS complement(34192709..34195246) /locus_tag="TCM_016726" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY25408.1" /db_xref="Phytozome:GSVIVT01036918001" /db_xref="TAIR:AT4G19440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H052" /translation="MDLRRLAVNKPIYIYTPITRPLTCVTSTTSAAAAAQQFNPQQQP QPPLNLTDSDSSNDSNNNNNQGLLGRLSCILSKSSLDSSKCKQLLPLLSPLDFDRFFS AISSHLNPKTTLHFFYLASQSFNFRFTLRSYCILILLLLLANHSSPARLLFIRLIDGK LPLSSPNNTTIDHIQITTALADLNTLSKGVPRVMGVDMLLHLYCTQFKNAGFTSAIDV FFTLADKGMFPSSKTCNFFLSSLVKANELQKTYQVFETLSRFVSLDVYLCTTMINAFC KGGRIQDAFALFSRMENLGIAPNVVTYNNIIHGLCKSGRLDEAFQLKQNMTRHGVQPN LITFSVLINGLIKLNKFEEANFVLKEMSGKGFVPNEVVYNTLIDGYCKMGNIDEALGV RDEMLSKGMIPNSVTLNSLVQGLCRTGQMEHAEHLLEEMLSIGLSINLGAFSSVIHWL CMKSRFDSALHFTRKMLLKNLRPNDRLITTLVGGLCKDGKHSEAIELWFKLFEKGFAA NTVTSNALLHGLYEAGKMQEAIRLLKEMIQSGLVLDRVSYNTLILGWCKAGKVEEAFR LKEEMFKRGIQPDIYTYNLLLHGISNMGKMKDATNIWDECKRHGIVSNVYTYAIMMDG YCKVDKIEECQNLFDELVTNKVDLNAVVYNTLIRAYCKNGNIMAAFKLHDDMKSKGIP PTICTYSSLIHGLCNMGLPEDARQLLLEMRGLGLVPNVVCYTALLGGYCRLGQMDKVG SLLQEMSSSNVQPNKITYTVMIDGYCKLGNMKEAGKLLCLMVKNGIVPDVVTYNAFTN GLCKEGRVEDAFKVCDHMASEGLPLDEITYTTLIHEWHLPSAWSNQE" CDS complement(34192709..34195246) /locus_tag="TCM_016726" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY25409.1" /db_xref="Phytozome:GSVIVT01036918001" /db_xref="TAIR:AT4G19440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H052" /translation="MDLRRLAVNKPIYIYTPITRPLTCVTSTTSAAAAAQQFNPQQQP QPPLNLTDSDSSNDSNNNNNQGLLGRLSCILSKSSLDSSKCKQLLPLLSPLDFDRFFS AISSHLNPKTTLHFFYLASQSFNFRFTLRSYCILILLLLLANHSSPARLLFIRLIDGK LPLSSPNNTTIDHIQITTALADLNTLSKGVPRVMGVDMLLHLYCTQFKNAGFTSAIDV FFTLADKGMFPSSKTCNFFLSSLVKANELQKTYQVFETLSRFVSLDVYLCTTMINAFC KGGRIQDAFALFSRMENLGIAPNVVTYNNIIHGLCKSGRLDEAFQLKQNMTRHGVQPN LITFSVLINGLIKLNKFEEANFVLKEMSGKGFVPNEVVYNTLIDGYCKMGNIDEALGV RDEMLSKGMIPNSVTLNSLVQGLCRTGQMEHAEHLLEEMLSIGLSINLGAFSSVIHWL CMKSRFDSALHFTRKMLLKNLRPNDRLITTLVGGLCKDGKHSEAIELWFKLFEKGFAA NTVTSNALLHGLYEAGKMQEAIRLLKEMIQSGLVLDRVSYNTLILGWCKAGKVEEAFR LKEEMFKRGIQPDIYTYNLLLHGISNMGKMKDATNIWDECKRHGIVSNVYTYAIMMDG YCKVDKIEECQNLFDELVTNKVDLNAVVYNTLIRAYCKNGNIMAAFKLHDDMKSKGIP PTICTYSSLIHGLCNMGLPEDARQLLLEMRGLGLVPNVVCYTALLGGYCRLGQMDKVG SLLQEMSSSNVQPNKITYTVMIDGYCKLGNMKEAGKLLCLMVKNGIVPDVVTYNAFTN GLCKEGRVEDAFKVCDHMASEGLPLDEITYTTLIHEWHLPSAWSNQE" CDS complement(34192709..34195246) /locus_tag="TCM_016726" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY25410.1" /db_xref="Phytozome:GSVIVT01036918001" /db_xref="TAIR:AT4G19440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H052" /translation="MDLRRLAVNKPIYIYTPITRPLTCVTSTTSAAAAAQQFNPQQQP QPPLNLTDSDSSNDSNNNNNQGLLGRLSCILSKSSLDSSKCKQLLPLLSPLDFDRFFS AISSHLNPKTTLHFFYLASQSFNFRFTLRSYCILILLLLLANHSSPARLLFIRLIDGK LPLSSPNNTTIDHIQITTALADLNTLSKGVPRVMGVDMLLHLYCTQFKNAGFTSAIDV FFTLADKGMFPSSKTCNFFLSSLVKANELQKTYQVFETLSRFVSLDVYLCTTMINAFC KGGRIQDAFALFSRMENLGIAPNVVTYNNIIHGLCKSGRLDEAFQLKQNMTRHGVQPN LITFSVLINGLIKLNKFEEANFVLKEMSGKGFVPNEVVYNTLIDGYCKMGNIDEALGV RDEMLSKGMIPNSVTLNSLVQGLCRTGQMEHAEHLLEEMLSIGLSINLGAFSSVIHWL CMKSRFDSALHFTRKMLLKNLRPNDRLITTLVGGLCKDGKHSEAIELWFKLFEKGFAA NTVTSNALLHGLYEAGKMQEAIRLLKEMIQSGLVLDRVSYNTLILGWCKAGKVEEAFR LKEEMFKRGIQPDIYTYNLLLHGISNMGKMKDATNIWDECKRHGIVSNVYTYAIMMDG YCKVDKIEECQNLFDELVTNKVDLNAVVYNTLIRAYCKNGNIMAAFKLHDDMKSKGIP PTICTYSSLIHGLCNMGLPEDARQLLLEMRGLGLVPNVVCYTALLGGYCRLGQMDKVG SLLQEMSSSNVQPNKITYTVMIDGYCKLGNMKEAGKLLCLMVKNGIVPDVVTYNAFTN GLCKEGRVEDAFKVCDHMASEGLPLDEITYTTLIHEWHLPSAWSNQE" CDS complement(34192709..34195246) /locus_tag="TCM_016726" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY25411.1" /db_xref="Phytozome:GSVIVT01036918001" /db_xref="TAIR:AT4G19440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H052" /translation="MDLRRLAVNKPIYIYTPITRPLTCVTSTTSAAAAAQQFNPQQQP QPPLNLTDSDSSNDSNNNNNQGLLGRLSCILSKSSLDSSKCKQLLPLLSPLDFDRFFS AISSHLNPKTTLHFFYLASQSFNFRFTLRSYCILILLLLLANHSSPARLLFIRLIDGK LPLSSPNNTTIDHIQITTALADLNTLSKGVPRVMGVDMLLHLYCTQFKNAGFTSAIDV FFTLADKGMFPSSKTCNFFLSSLVKANELQKTYQVFETLSRFVSLDVYLCTTMINAFC KGGRIQDAFALFSRMENLGIAPNVVTYNNIIHGLCKSGRLDEAFQLKQNMTRHGVQPN LITFSVLINGLIKLNKFEEANFVLKEMSGKGFVPNEVVYNTLIDGYCKMGNIDEALGV RDEMLSKGMIPNSVTLNSLVQGLCRTGQMEHAEHLLEEMLSIGLSINLGAFSSVIHWL CMKSRFDSALHFTRKMLLKNLRPNDRLITTLVGGLCKDGKHSEAIELWFKLFEKGFAA NTVTSNALLHGLYEAGKMQEAIRLLKEMIQSGLVLDRVSYNTLILGWCKAGKVEEAFR LKEEMFKRGIQPDIYTYNLLLHGISNMGKMKDATNIWDECKRHGIVSNVYTYAIMMDG YCKVDKIEECQNLFDELVTNKVDLNAVVYNTLIRAYCKNGNIMAAFKLHDDMKSKGIP PTICTYSSLIHGLCNMGLPEDARQLLLEMRGLGLVPNVVCYTALLGGYCRLGQMDKVG SLLQEMSSSNVQPNKITYTVMIDGYCKLGNMKEAGKLLCLMVKNGIVPDVVTYNAFTN GLCKEGRVEDAFKVCDHMASEGLPLDEITYTTLIHEWHLPSAWSNQE" CDS complement(34192709..34195246) /locus_tag="TCM_016726" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY25412.1" /db_xref="Phytozome:GSVIVT01036918001" /db_xref="TAIR:AT4G19440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H052" /translation="MDLRRLAVNKPIYIYTPITRPLTCVTSTTSAAAAAQQFNPQQQP QPPLNLTDSDSSNDSNNNNNQGLLGRLSCILSKSSLDSSKCKQLLPLLSPLDFDRFFS AISSHLNPKTTLHFFYLASQSFNFRFTLRSYCILILLLLLANHSSPARLLFIRLIDGK LPLSSPNNTTIDHIQITTALADLNTLSKGVPRVMGVDMLLHLYCTQFKNAGFTSAIDV FFTLADKGMFPSSKTCNFFLSSLVKANELQKTYQVFETLSRFVSLDVYLCTTMINAFC KGGRIQDAFALFSRMENLGIAPNVVTYNNIIHGLCKSGRLDEAFQLKQNMTRHGVQPN LITFSVLINGLIKLNKFEEANFVLKEMSGKGFVPNEVVYNTLIDGYCKMGNIDEALGV RDEMLSKGMIPNSVTLNSLVQGLCRTGQMEHAEHLLEEMLSIGLSINLGAFSSVIHWL CMKSRFDSALHFTRKMLLKNLRPNDRLITTLVGGLCKDGKHSEAIELWFKLFEKGFAA NTVTSNALLHGLYEAGKMQEAIRLLKEMIQSGLVLDRVSYNTLILGWCKAGKVEEAFR LKEEMFKRGIQPDIYTYNLLLHGISNMGKMKDATNIWDECKRHGIVSNVYTYAIMMDG YCKVDKIEECQNLFDELVTNKVDLNAVVYNTLIRAYCKNGNIMAAFKLHDDMKSKGIP PTICTYSSLIHGLCNMGLPEDARQLLLEMRGLGLVPNVVCYTALLGGYCRLGQMDKVG SLLQEMSSSNVQPNKITYTVMIDGYCKLGNMKEAGKLLCLMVKNGIVPDVVTYNAFTN GLCKEGRVEDAFKVCDHMASEGLPLDEITYTTLIHEWHLPSAWSNQE" mobile_element complement(34196213..34196252) /note="source:CACAO_M_E33804_F134_scaffold_4 11194 11235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34196244..34197030) /note="source:CACAO_Again_on_S_E155_scaffold_4 6 815" /mobile_element_type="transposon:TIR/hAT" gene 34199070..34204071 /locus_tag="TCM_016727" /note="dbxref CacaoGD:Thecc1EG016727" mRNA join(34199070..34199700,34202237..34203168, 34203275..34204071) /locus_tag="TCM_016727" /product="Major facilitator superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29827.m002617" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025727t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01040.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01961t00001" mRNA join(34199070..34199700,34202262..34203168, 34203275..34204071) /locus_tag="TCM_016727" /product="Major facilitator superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29827.m002617" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025727t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10470.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b016165t1a2; inference alignment:Newbler:10:TSA:cgbaL_g01961t00001" CDS join(34199281..34199700,34202237..34203168, 34203275..34203755) /locus_tag="TCM_016727" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025727t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 1" /protein_id="EOY25413.1" /db_xref="Phytozome:POPTR_0001s01040.1" /db_xref="TAIR:AT5G45275.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H051" /translation="MRPRKELDRKHQIFNLKSNLRPRPKQYSISDLLLRFVMAGQSRK WMILVATIWIQAFTGTNFDFSAYSTEMKRVLGISQVQLNYLAVASDMGKAFGWSSGLA LTYFPLWVVLFMAAFMGLFGYGIQWLVIRNVISLPYMLVFCLCLLAGCSICWFNTVCF VLCIKNFPANRALALSLTVSYNGVSAALYALAGDAINASSSSLYLLLNSLVPLIISIA ALVPILRQPPVDPLSPEAVRSDSIMFLLLNVLALLTGVYLLIFGSNATDSTTARLLFG GAIFLLVFPLCVPGVVYARHWFHHTVHSSFQLGGSGFILVDDDDLELHKRLLSREASF NDRNGSLSDDASEYKMGSQKCIDEDSARCCEKMIGKDQLVILGEEHPAQVLVRRWDFW LYYVAYFCGGTIGLVYSNNLGQIAQSLGESSNTALLLTLYSSFSFFGRLLSAAPDYVR AKMYFARTGWLAIALLPTPIAFFLLAGLGNSMALRAGTALIGLSSGFIFAAAVSVTSE LFGPNSVGVNHNILITNIPIGSLVYGVLAAIVYDANAGKGLKLSFADSVVCMGRQCYF LTFVWWGCLSILGLASSLLLFLRTKHAYDAFERNRALAEASQES" CDS join(34199412..34199700,34202262..34203168, 34203275..34203755) /locus_tag="TCM_016727" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025727t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 2" /protein_id="EOY25414.1" /db_xref="Phytozome:POPTR_0003s10470.1" /db_xref="TAIR:AT5G45275.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H051" /translation="MDDSSGDDLDSSVHRHEFRFLRVFHGDEASAGDIAGAVELPGCG VGYGEGLRVVLRVGSHVFSSVGGALHGCFHGPFWLWNSVARHSECHLFAVYAGCSICW FNTVCFVLCIKNFPANRALALSLTVSYNGVSAALYALAGDAINASSSSLYLLLNSLVP LIISIAALVPILRQPPVDPLSPEAVRSDSIMFLLLNVLALLTGVYLLIFGSNATDSTT ARLLFGGAIFLLVFPLCVPGVVYARHWFHHTVHSSFQLGGSGFILVDDDDLELHKRLL SREASFNDRNGSLSDDASEYKMGSQKCIDEDSARCCEKMIGKDQLVILGEEHPAQVLV RRWDFWLYYVAYFCGGTIGLVYSNNLGQIAQSLGESSNTALLLTLYSSFSFFGRLLSA APDYVRAKMYFARTGWLAIALLPTPIAFFLLAGLGNSMALRAGTALIGLSSGFIFAAA VSVTSELFGPNSVGVNHNILITNIPIGSLVYGVLAAIVYDANAGKGLKLSFADSVVCM GRQCYFLTFVWWGCLSILGLASSLLLFLRTKHAYDAFERNRALAEASQES" mobile_element complement(34203972..34204479) /note="source:CACAO_MITE_S192_scaffold_8 3 485" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(34204363..34204495) /note="source:CACAO_Mariner_E11_scaffold_1 986 1118" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 34204535..34208869 /locus_tag="TCM_016728" /note="dbxref CacaoGD:Thecc1EG016728" mRNA join(34204535..34205110,34205261..34205342, 34205434..34205524,34205685..34205714,34205805..34205914, 34206004..34206076,34206172..34206292,34206419..34206536, 34206891..34207030,34207287..34207344,34207949..34208019, 34208113..34208869) /locus_tag="TCM_016728" /product="Cyclin-dependent kinase C,1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene22405" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031517t1" /inference="similar to AA sequence:ricco:29864.m001465" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08587t00001" mRNA join(34204734..34205110,34205261..34205342, 34205434..34205524,34205691..34205714,34205805..34205914, 34206004..34206076,34206172..34206292,34207951..34208019, 34208113..>34208571) /locus_tag="TCM_016728" /product="Cyclin-dependent kinase C,1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene22405" /inference="similar to AA sequence:Phytozome:GSVIVT01037432001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc259t11_C2; inference alignment:Newbler:10:TSA:cgbaL_g08587t00001" CDS join(34205001..34205110,34205261..34205342, 34205434..34205524,34205685..34205714,34205805..34205914, 34206004..34206076,34206172..34206292,34206419..34206536, 34206891..34207030,34207287..34207344,34207949..34208019, 34208113..34208659) /locus_tag="TCM_016728" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29864.m001465; paralog of Thecc1EG031517t1" /codon_start=1 /product="Cyclin-dependent kinase C,1 isoform 1" /protein_id="EOY25415.1" /db_xref="TAIR:AT5G10270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W4P1" /translation="MAIAGAGQLNLNESPCWGSRSVDCFEKLEQIGEGTYGQVYMAKE IKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDDQG RPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVL HRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGATKYG PAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYTTF KPTRPMKRRLREVFRHFDRHALELLERMLMLDPSQRISAKDALDAEYFWTDPLPCDPK SLPKYESSHEFQTKKKRQQQRQHEENAKRQKLQHPQPHTRLPPIQQSGQAHAQMRPGP NPTMHGSQPAVATGPSHHYGKPRGPAGGPGRYPPSGTSGGYNHPNRGGQGGGGGYSSG PYPPQGRAPPYGSSSMPGAGPRGGGGSGYGVGAPNYSQGGPYGSSGAGRGSNMMGGNR NQQYSWQQ" CDS join(34205001..34205110,34205261..34205342, 34205434..34205524,34205691..34205714,34205805..34205914, 34206004..34206076,34206172..34206292,34207951..34208019, 34208113..>34208569) /locus_tag="TCM_016728" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cyclin-dependent kinase C,1 isoform 2" /protein_id="EOY25416.1" /db_xref="Phytozome:GSVIVT01037432001" /db_xref="TAIR:AT5G10270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W4P1" /translation="MAIAGAGQLNLNESPCWGSRSVDCFEKLEQIGEGTYGQVYMAKE IKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPEKDDQGRP DGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHR DIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRISAKDALDAEYFWT DPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEENAKRQKLQHPQPHTRLPPIQQSGQA HAQMRPGPNPTMHGSQPAVATGPSHHYGKPRGPAGGPGRYPPSGTSGGYNHPNRGGQG GGGGYSSGPYPPQGRAPPYGSSSMPGAGPRGGGGSGYGVGAPNYS" gene complement(34208895..34212545) /locus_tag="TCM_016729" /note="dbxref CacaoGD:Thecc1EG016729" mRNA complement(join(34208895..34211163,34211243..34211358, 34211840..34211938,34212041..34212545)) /locus_tag="TCM_016729" /product="RINT-1 / TIP-1 family, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s02570.1" /inference="similar to AA sequence:Phytozome:POPTR_0009s02570.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04591t00001" CDS complement(join(34209196..34211163,34211243..34211358, 34211840..34211938,34212041..34212347)) /locus_tag="TCM_016729" /codon_start=1 /product="RINT-1 / TIP-1 family, putative" /protein_id="EOY25417.1" /db_xref="Phytozome:POPTR_0009s02570.1" /db_xref="TAIR:AT1G08400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HPU9" /translation="MRRERDRVMEGWHPQYLILPKLGKLCRQQAEYLDQHFKTQKDVS SSSSCLLSEWTKHCTDFDACLLHLRTTLMERALSWISRSFRAKACLGNLNLSLYASSP YGTASHRMRRILGEELPQLTLQLRRIHNILQYLETALRLEALVGDLEDAVFCSGIHSM GKIFTKLSTSLSSNDFGLKQERLLQAIKAMNDIEDMVINVEKSHQQCHQLLQSVDHRV DKTLSVLRPEALAEHRALLASLGWPPNFLTSKVEGGGISELPNPLVLIHRDEKKSYAQ SFQVLCALQQLQTRREARKFETLDQKECGIQLWAIDELVSPIAERMEYHFLKWAEQPE FIFALVFKITRDFIVGVSDILQPMIDAARLSSCSANEAWVSAMVHMLSGFLAKKVFPS LAERYKKKDMKLEVVSLWLHLVDLIVGFDKQMQSLVRSETCLLLPDAERYGGLSRGIS VLILFCDRPDWLKVWAKMELKDGWKKLKAVLKDARAWLIDDKHRVDFNVSTVSETFLL SSREDHKAPLVAESALKIAQEMMDRCQNLPAILARVKFVRSTVARFFWYFSNVLLLHC KNAEFSPENPDDGALVRACESINAARYVESKLQEWSDDVSFLEMKIAENDSNIQKKDK VVDDGCFFEEEIKFLAELETNLLMEIIAVFLRQFENLTLEYDHNEDYIDEDHNLTSNR DSAATALAVSSGFIEALDSLRSQLHVVKINLNPKDFLDLWRSVADGLDHFISGSIFAS DVQFSGNQTNQFGTDMQALFLVFQPFCARPQAFFPCIRDILKLLTISKEGVKQLLAAL SSKKSEKCMQFCGVSHLSFDQVDKILRNMKS" gene complement(34212521..34214595) /locus_tag="TCM_016730" /note="dbxref CacaoGD:Thecc1EG016730" mRNA complement(34212521..34214595) /locus_tag="TCM_016730" /product="UDP-Glycosyltransferase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031713t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10460.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10451t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10452t1" CDS complement(34212754..34214220) /locus_tag="TCM_016730" /note="paralog of Thecc1EG031713t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein" /protein_id="EOY25418.1" /db_xref="Phytozome:POPTR_0003s10460.1" /db_xref="TAIR:AT4G19460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8QWP9" /translation="MAFYSKPKKPHLISFHSNLNLCTTLFFLLVFTVPLLFLLHTCTY SLCTTFAPNNVNSWSGDLRKAEFAWNRLPFTQIQPPPIRLKIAVFSRKWPIGTTPGGM ERHAYTLHTALARRGHQVHVFTSPVDGGKAPPDTPTSSANSPRIHCHEGEAGKWRYNK AWELFNEESQRGPFDVIHSESVALPHWLARNLKNLAVSWHGIALESLQSSIYQDLTRK PNEPMSPAFNVSLYGVVPKVLNEIRFFHNYAHHVAISDSCGEMLRDVYQIPRKRVHVI LNGVDENGFRNDLSLGLYFRSKIGVPRNGSLVLGVAGRLVKDKGHPLLYEAFSKLIRK HPDVYLLVAGSGPWEQRYRELGPRVLVLGSMAPSQLRAFYNAIDIFVNPTLRPQGLDL TLMEAMMSGKPVMASRFPSIQGSIVVDDELGFMFSPNVDSLLEALEGVVREGPKRLAQ RGKASQEYAASMFTASKMALAYERLFLCIKNDTFCVYP" gene complement(34214789..34217245) /locus_tag="TCM_016731" /note="dbxref CacaoGD:Thecc1EG016731" mRNA complement(join(34214789..34215741,34215950..34216073, 34216208..34216344,34216525..34216660,34216766..34217245)) /locus_tag="TCM_016731" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29827.m002615" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037522t1" /inference="similar to AA sequence:ricco:29827.m002615" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc1676t1" CDS complement(join(34215299..34215741,34215950..34216073, 34216208..34216344,34216525..34216660,34216766..34217182)) /locus_tag="TCM_016731" /note="dbxref ricco:29827.m002615; paralog of Thecc1EG037522t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY25419.1" /db_xref="TAIR:AT1G61590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY91" /translation="MTDSSKPWRPFAANCCSADDQTIFGNFSRCRPSRSDFSKNIAPL PSFRRLSYSDLSRSSSTRITEDLAQSFGPDLYDFQLSELRAITQNFSSNYLLGEGGFG TVHKGYVDDNFRQGLKAQAVAVKLLDIEGLQGHREWLAEVIFLGQLRHPHLVKLIGYC CEDEQRLLVYEFMPRGSLENHLFKRISTSLPWGTRLKIAIGAAKGLAFLHGAENPVIY RDFKTSNILVDSDFTAKLSDFGLAKMGPEGSNTHVTTRVMGTYGYAAPEYVSTGHLTT KSDVYSFGVVLLELLTGRRSVEKSRSKNEQILVDWAKPYLSSSRRLRYIMDPRLSGQY SVKGAKEMALLALQCISLNPKDRPRMPAIVQTLEALQQYKDMAVSCGQWPVSVSPKST KTNGPKFRGAQGRGKLTATTANRKAA" mobile_element 34215701..34215776 /note="source:CACAO_Again_on_E169_scaffold_7 789 873" /mobile_element_type="transposon:TIR/hAT" gene 34218194..34219258 /locus_tag="TCM_016732" /note="dbxref CacaoGD:Thecc1EG016732" mRNA 34218194..34219258 /locus_tag="TCM_016732" /product="Serine/threonine-protein kinase STE20, putative" /inference="alignment:exonerate- protein:2:ricco:29827.m002607" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10453t1" CDS 34218284..34218979 /locus_tag="TCM_016732" /codon_start=1 /product="Serine/threonine-protein kinase STE20, putative" /protein_id="EOY25420.1" /translation="MADFGFLSDTDESAVEEVISQAQDLCVLEQLSAINCSTLAHSVL PSDLDSRFRRLKSFPVPITRTTHQSPDKDCHSDSHDSPQRKYSFKPKQTPSSPPSISD SSPQNALFSPSVPKNRLPSNSRSFASPLPPDSSPPQKAGCFWCSPKKISKKNKENRVL GTALDSDEFLSNFTTFSVKEQQSMLNNVIKEQDKISREAEKIVNWAKQASARMTFPGI EDELSHSDDEHAK" gene 34219525..34220249 /locus_tag="TCM_016733" /note="dbxref CacaoGD:Thecc1EG016733" mRNA 34219525..34220249 /locus_tag="TCM_016733" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage" CDS 34219650..34219934 /locus_tag="TCM_016733" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25421.1" /translation="MLNLVYLFLDKFSTDEIINDYPNVGQVKPHGYGFSQPSGCHLQE PIQVAIQQMDKADFRIKFQSSICSGNRRWRDQAGSLQLQFGTREMNRYRC" gene 34220715..34222385 /locus_tag="TCM_016734" /note="dbxref CacaoGD:Thecc1EG016734" mRNA 34220715..34222385 /locus_tag="TCM_016734" /product="Eukaryotic aspartyl protease family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025719t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10440.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12029t1" CDS 34220750..34222126 /locus_tag="TCM_016734" /note="paralog of Thecc1EG025719t1" /codon_start=1 /product="Eukaryotic aspartyl protease family protein, putative" /protein_id="EOY25422.1" /db_xref="Phytozome:POPTR_0003s10440.1" /db_xref="TAIR:AT2G35615.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3EBM5" /translation="MASTFRACSLLSAALVSVMCICLTHQLLVFSAAKAMPSSFSVDL IHRDSPISPLYNPLETRFDRLYNAYNRSISRINRFRPNSESSNNYTSKALQSDTVSSG GEYFMKFSVGTPPVSVLGIADTGSDLTWVQCKPCEQCYGQKPPLFDPRKSSTYKNLPC GSNSCNALDSSERVCDQQNACKYSYSYGDRSFTKGNVALEKFTIGVSTRSSPVLSFPN LVFGCGHSNGGTFDDVGSGIVGLGGGPLSLVKQLDKSIRGKFSYCLAPTAYAEEPCAS SRIIFGTATESDAAAVSTPLVDKNPSTYYFITLEAISVGDRRLAYGGSSASPTEKLGN IIIDSGTTLTFLESEFYNSLESALEEAIEAKRVSDPKGLLSPCFKGAKDIDLPVITFH FSGADVKLQPWNTFAQVQEDMVCFTIVPSNDIAIFGNLSQMDFLVSYDLEERTVSFTP TDCTKPLM" gene 34222400..34228442 /locus_tag="TCM_016735" /note="dbxref CacaoGD:Thecc1EG016735" mRNA join(34222400..34222904,34223661..34223774, 34223883..34223952,34224032..34224180,34224579..34224680, 34225315..34225515,34226331..34226393,34226554..34226700, 34227780..34227854,34228051..34228442) /locus_tag="TCM_016735" /product="Intersectin-2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006797t1" /inference="similar to AA sequence:ricco:29827.m002608" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01860t00002" CDS join(34222845..34222904,34223661..34223774, 34223883..34223952,34224032..34224180,34224579..34224680, 34225315..34225515,34226331..34226393,34226554..34226700, 34227780..34227854,34228051..34228176) /locus_tag="TCM_016735" /note="dbxref ricco:29827.m002608; paralog of Thecc1EG006797t1" /codon_start=1 /product="Intersectin-2" /protein_id="EOY25423.1" /db_xref="TAIR:AT4G34660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10NK5" /translation="MEAIKKQATKLREQVAKQQQAVLRHLGHFSNEDITVDEAELQCH QKLQDLYISTKAAKHLQRNIVRGIEGFIATSSKLLEIARKLADDCCKYGAESQSSDSF LARAALQFGKSHKSMEDERETLLGILGEQVSEPLRALITGAPLEDARHLTHRYDRLRQ EVEAQAADVLRRRSKTRESDISAESYMKLKQAEARLTELKASMMVLGREATAAMLSVE DQQQKITFQRLLAMVDAEKSYHRRILAILEKLYAEMILEEQSNESLNSVTLQREVNVA LADDNTCSNGSKAQINNQSDVYFIAKVVHPFDAQADGELSLAVGDYVVVRQVGPTGWS EGECKGKAGWFPSAYVERQEKAPASKISEANSAA" mobile_element 34225195..34225288 /note="source:CACAO_M_S_E18487_F233_scaffold_3 1260 1357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34225242..34225317) /note="source:CACAO_M_S_E32752_F12_scaffold_4 4101 4166" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 34228490..34233028 /locus_tag="TCM_016736" /note="dbxref CacaoGD:Thecc1EG016736" mRNA join(34228490..34229079,34229196..34229593, 34229676..34229810,34230641..34230823,34231566..34231727, 34232034..34232592,34233004..34233028) /locus_tag="TCM_016736" /product="Putrescine-binding periplasmic protein-related" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036935001" /inference="similar to AA sequence:Phytozome:POPTR_0003s10420.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc740t9" CDS join(34228791..34229079,34229196..34229593, 34229676..34229810,34230641..34230823,34231566..34231727, 34232034..34232456) /locus_tag="TCM_016736" /codon_start=1 /product="Putrescine-binding periplasmic protein-related" /protein_id="EOY25424.1" /db_xref="Phytozome:POPTR_0003s10420.1" /db_xref="TAIR:AT1G31410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q66GJ0" /translation="MALAASVSCSCRCFDAHLSNSNFNPNKYKKGSNFPPLIHAKPSR QLPLTPDKKSLLLGFSASTLVVVGLGLCICSSASALRPLPLPCHSLQLHLEKDERVDN KSAEEDEKLEAAFETWKSKSFALSVPLSIVALQGSMPPSWPKDFISSQSRRLKLQTKF RPSLEDIFSHLCVPFTKAKGNIRPASTVAADIVTLGDSWLPHAIKKAIIEPITAAEHQ DWFQELGHQWKVYLRRNHNGDIDPQGQIWAAPYRWGTMVIAYKKTKFQKHKLPPIQDW ADLWRPELAGRISMVNSPREVIGAVLKYMGASYNTTDIDLQVAGGRDAVQRNLALLAR QVQLFDSENYLRAFSVGDVWVAVGWSSDVLPVVKRMSNVAVIVPKSGASLWADLWVIP AASRLETDRIGGRVRGPSPLIHQWAEFCLQTARALPLKQGVIAGASPSALESVPVKLI EEITKGKPKLDTNLVAGVPPPEILERCEFLEPFSDATLWDYQRLIDSMPKSGPGFMHM MEYISSIIGTVRLKLSSIKVL" gene complement(34232808..34240018) /locus_tag="TCM_016737" /note="dbxref CacaoGD:Thecc1EG016737" mRNA complement(join(34232808..34233487,34234038..34234171, 34235103..34235348,34235580..34235912,34236019..34236186, 34236386..34236483,34236700..34236771,34236892..34236963, 34237063..34237134,34237616..34237687,34237795..34237866, 34237965..34238100,34238480..34238711,34239389..34239507)) /locus_tag="TCM_016737" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01120.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013815t1" /inference="similar to AA sequence:ricco:29827.m002612" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06063t00001; inference alignment:Newbler:10:TSA:cgbaL_g06063t00001" CDS complement(join(34233269..34233487,34234038..34234171, 34235103..34235348,34235580..34235912,34236019..34236186, 34236386..34236483,34236700..34236771,34236892..34236963, 34237063..34237134,34237616..34237687,34237795..34237866, 34237965..34238100,34238480..34238576)) /locus_tag="TCM_016737" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29827.m002612; paralog of Thecc1EG013815t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY25425.1" /db_xref="TAIR:AT1G31420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LGF4" /translation="MGICLMKRQWPWLLHVLVFFILINRIRAISPDGEALLSFRIAIV SSDGFLSQWRPEDPDPCKWKGVTCDSKTKRVTTLSLTNHKLSGPISPDIGKLEHLRLL MLHNNNFYGAIPSELGNCTELQGIYLQGNYLSGLIPSELGNLTSLQNLDISSNSLSGS IPPSLGKLDKLVTFNVSNNFLVGPIPSQGVFSNYTLSSFVGNRDLCGKQINVACKDDS GGATTNSQSPTSAQNPAGKKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNE GRTLAMDVSGGASIVMFHGDLPYTSKDIIKKLETLNEEHVIGTGGFGTVYKLAMDDGN VFALKRIVKMNEGFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLIYDFLAGGSL DEALHERSEQLDWEARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDSNLEARV SDFGLAKLLEDEESHITTIVAGTFGYLAPEYMASGRATEKTDVYSFGVLVLEVLSGKR PTDASFIEKGLNIVGWLNFLITENRQREIVDPNCEGVQVESLDALLSVAIQCVSSSPE DRPTMHRVVQLLESEVMTPCPSDFYDSNSD" mRNA complement(join(<34234145..34234171,34235103..34235348, 34235580..34235912,34236019..34236186,34236386..34236483, 34236700..34236771,34236892..34236963,34237063..34237134, 34237616..34237687,34237795..34237866,34237965..34238100, 34238480..34238711,34239389..34239841,34239990..34240018)) /locus_tag="TCM_016737" /product="Leucine-rich repeat protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01120.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013815t1" /inference="similar to AA sequence:ricco:29827.m002612" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc225t9; inference alignment:Newbler:10:TSA:cgbaL_g06063t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc214t8_C2" CDS complement(join(<34234146..34234171,34235103..34235348, 34235580..34235912,34236019..34236186,34236386..34236483, 34236700..34236771,34236892..34236963,34237063..34237134, 34237616..34237687,34237795..34237866,34237965..34238100, 34238480..34238576)) /locus_tag="TCM_016737" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29827.m002612; paralog of Thecc1EG013815t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 2" /protein_id="EOY25426.1" /db_xref="TAIR:AT1G31420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LGF4" /translation="MGICLMKRQWPWLLHVLVFFILINRIRAISPDGEALLSFRIAIV SSDGFLSQWRPEDPDPCKWKGVTCDSKTKRVTTLSLTNHKLSGPISPDIGKLEHLRLL MLHNNNFYGAIPSELGNCTELQGIYLQGNYLSGLIPSELGNLTSLQNLDISSNSLSGS IPPSLGKLDKLVTFNVSNNFLVGPIPSQGVFSNYTLSSFVGNRDLCGKQINVACKDDS GGATTNSQSPTSAQNPAGKKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNE GRTLAMDVSGGASIVMFHGDLPYTSKDIIKKLETLNEEHVIGTGGFGTVYKLAMDDGN VFALKRIVKMNEGFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLIYDFLAGGSL DEALHERSEQLDWEARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDSNLEARV SDFGLAKLLEDEESHITTIVAGTFGYLAPEYMASGRAT" gene 34239979..34243342 /locus_tag="TCM_016738" /note="dbxref CacaoGD:Thecc1EG016738" mRNA join(34239979..34240792,34241263..34241508, 34242138..34242345,34242670..34243089) /locus_tag="TCM_016738" /product="Heat stress transcription factor A-1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400038521" /inference="similar to AA sequence:ricco:30150.m000481" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05400t00001; inference alignment:Newbler:10:TSA:cgbaP2_g05400t00001" mRNA join(34239989..34240792,34241263..34241508, 34242138..34242345,34242670..34243342) /locus_tag="TCM_016738" /product="Heat stress transcription factor A-1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400038521" /inference="similar to AA sequence:ricco:30150.m000481" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc919t1; alternateUTRof:Thecc1EG016738t1; inference alignment:Newbler:10:TSA:cgbaP2_g05400t00001" CDS join(34239995..34240792,34241263..34241508, 34242138..34242278) /locus_tag="TCM_016738" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30150.m000481" /codon_start=1 /product="Heat stress transcription factor A-1, putative isoform 1" /protein_id="EOY25427.1" /db_xref="TAIR:AT5G64150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FMI5" /translation="MIALNQLRHERLMELRVSGLCCGVYAKFMRPGSHFCPNSKSGSS ISSSSVEVKPKIPLYLRPPSFSASLSELKKWHRWAKNLASSVGSSFVRLDNGPDSTLL RRELNWLLQDLLELQHHPVILSLLESDSNENVDTSVALKAPLEELYCAWRQRIEERRP FQYVVGCQHWRDLVLSVQEGVLIPRPETEMIIDIVERVALKTTPKLVHGLWADLGTGS GAIAIATARALATHAHAHAHAHGRVIATDLSPVAVAVAAFNVQRYGLQDMVEVRKGSW FEPLKDIQGKLAGVVSNPPYIASGDIPGLQAEVGQHEPKLALDGGITGTNDLLHLIDG AASMLKPGGFFAFETNGDKQCEFLLNYIENDKSGSFCNVHPVSDFDGIQRFVLGFRQR MV" CDS join(34239995..34240792,34241263..34241508, 34242138..34242278) /locus_tag="TCM_016738" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30150.m000481" /codon_start=1 /product="Heat stress transcription factor A-1, putative isoform 1" /protein_id="EOY25428.1" /db_xref="TAIR:AT5G64150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FMI5" /translation="MIALNQLRHERLMELRVSGLCCGVYAKFMRPGSHFCPNSKSGSS ISSSSVEVKPKIPLYLRPPSFSASLSELKKWHRWAKNLASSVGSSFVRLDNGPDSTLL RRELNWLLQDLLELQHHPVILSLLESDSNENVDTSVALKAPLEELYCAWRQRIEERRP FQYVVGCQHWRDLVLSVQEGVLIPRPETEMIIDIVERVALKTTPKLVHGLWADLGTGS GAIAIATARALATHAHAHAHAHGRVIATDLSPVAVAVAAFNVQRYGLQDMVEVRKGSW FEPLKDIQGKLAGVVSNPPYIASGDIPGLQAEVGQHEPKLALDGGITGTNDLLHLIDG AASMLKPGGFFAFETNGDKQCEFLLNYIENDKSGSFCNVHPVSDFDGIQRFVLGFRQR MV" gene complement(34243490..34245925) /locus_tag="TCM_016739" /note="dbxref CacaoGD:Thecc1EG016739" mRNA complement(join(34243490..34243821,34243907..34244051, 34245669..34245925)) /locus_tag="TCM_016739" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036937001" /inference="similar to AA sequence:Phytozome:GSVIVT01036937001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc104t2_C2" CDS complement(join(34243968..34244051,34245669..34245791)) /locus_tag="TCM_016739" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25429.1" /db_xref="Phytozome:GSVIVT01036937001" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUE4" /translation="MTRGKQKIEAQRRNAEKNQKPKGSQMEARAVALKASCPICKVQL ANAKQLGDHYTSKHPKERPPAESS" gene 34247180..34248809 /locus_tag="TCM_016740" /note="dbxref CacaoGD:Thecc1EG016740" mRNA 34247180..34248809 /locus_tag="TCM_016740" /product="KAR-UP F-box 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s23770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025709t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s02891.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12047t1" CDS 34247219..34248313 /locus_tag="TCM_016740" /note="paralog of Thecc1EG025709t1" /codon_start=1 /product="KAR-UP F-box 1, putative" /protein_id="EOY25430.1" /db_xref="Phytozome:POPTR_0009s02891.1" /db_xref="TAIR:AT1G31350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N6J1" /translation="MGKSHHPRKRHKLVAHHQDRQEQPLIPGLPDHVAELCLSRLHPS LLYSICRSWRRFIYSPLFLPFPSLYTLFSSSNNEIQLLSFDPMTSKWEPVPPPPSPLR LLVHHPSFISRNLPVQSISVSGNLVLLAATAPNFNPALSRPLIFSPLSRSWRLGPPMA TPRRWCAVGASGPTIYVASGIGFHFSTDVARSLERWDLEDDEMKGARWKKMRQLKDGR FSRDAIDAVGWRRKLCMVNVAKQGSVYDVENDRWEDMPEGMVAGWRGPVAAMDEEVLY AVDEVKGVLTRYDQDTTDWEEIMESERLIGARQMAAAAGRLCVVCGNGEILVVDVVVV PPRFWVVESPPALEPLAVHVLPRMSRADFS" gene complement(34249272..34251791) /locus_tag="TCM_016741" /note="dbxref CacaoGD:Thecc1EG016741" mRNA complement(join(34249272..34249660,34250396..34250567, 34251166..34251791)) /locus_tag="TCM_016741" /product="Ankyrin repeat family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10350.1" /inference="similar to AA sequence:ricco:30020.m000212" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10466t2" CDS complement(join(34249443..34249660,34250396..34250567, 34251166..34251291)) /locus_tag="TCM_016741" /note="dbxref ricco:30020.m000212" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY25431.1" /db_xref="TAIR:AT5G07840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FF09" /translation="MPQEQPLRRNLSKRRSFRCGVDRDDRGWTMLHIGARKGDLNQVK QLLNEGMDVNVAAWGPKSKGVTPLHLAAEGGHLEVMDELLERGANIDARTKGACGWTP LHTAAKERKKEAVKFLIENGAFLPDDINDSRFNPPLHYCPGLEWAYEEMKRLQRDNLS AGETSYSSESL" mobile_element complement(34252432..34253571) /note="source:INTACT135F_F90_scaffold_2-int 12863 14003" /mobile_element_type="retrotransposon:LTR/Copia" gene 34253530..34258139 /locus_tag="TCM_016742" /note="dbxref CacaoGD:Thecc1EG016742" mRNA join(34253530..34254102,34257101..34258139) /locus_tag="TCM_016742" /product="ATP-dependent Clp protease proteolytic subunit 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01020796001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019287t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10230.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc3g10467t1" CDS join(34253720..34254102,34257101..34257584) /locus_tag="TCM_016742" /note="paralog of Thecc1EG019287t1" /codon_start=1 /product="ATP-dependent Clp protease proteolytic subunit 4" /protein_id="EOY25432.1" /db_xref="Phytozome:POPTR_0003s10230.2" /db_xref="TAIR:AT5G45390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94B60" /translation="MDLLSLSSPLTPSLSSLQLKLKHKTSFTSPNPKPSFLCLTPTPV SSSVKVKTTPKCLQLSAPQSPATAMRGAETDAMGLLLRERIVFLGNNIDDFVADAIIS QLLLLDAQDPNKDIRLFINSPGGSLSATMAIYDVVQLVRADVSTVALGIAASTASIIL GGGTKGKRLAMPNTRIMIHQPLGGASGQAIDVEIQAQEIMHNKNNVTRIISGFTGRSF EQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPLAPVPERVKASLNYEEISKDPRK FLTPDIPDDEIY" gene 34258272..34259791 /locus_tag="TCM_016743" /note="dbxref CacaoGD:Thecc1EG016743" mRNA join(34258272..34258565,34258914..34259791) /locus_tag="TCM_016743" /product="Homeodomain-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g35370.1" /inference="similar to AA sequence:Phytozome:Glyma01g35370.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12064t1" CDS join(34258311..34258565,34258914..34259513) /locus_tag="TCM_016743" /codon_start=1 /product="Homeodomain-like superfamily protein" /protein_id="EOY25433.1" /db_xref="Phytozome:Glyma01g35370.1" /db_xref="TAIR:AT2G38250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJ54" /translation="MFGGGDSEGVGGRISSMLGGGGGQWGPEETRELILIRGELERDF TAAKRNKTLWEIVSARMRDRGYIRTPDQCKCKWKNLLNRYKGKETSDPENGRQFPFFE ELHAVFTERAKNMQRLLLESEAGSTQAKKRMRRISADRSSDEFSEEEDDDEDESEEER HARSISSRKRKADRVVLDKSPRPNSGTSSTSSTGLQEMLREFFQQQQRMEMQWREMME RRARERQLFEQEWRQSMEKLERERLMVEQAWREREEQRRLREESRAERRDALLTTLLN KLINDNNL" gene complement(34259753..34265857) /locus_tag="TCM_016744" /note="dbxref CacaoGD:Thecc1EG016744" mRNA complement(join(34259753..34260480,34260798..34261447, 34261819..34262057,34262146..34262408,34262496..34262716, 34262836..34262918,34262998..34263093,34263174..34263281, 34264536..34264782,34265280..34265857)) /locus_tag="TCM_016744" /product="Solute:sodium symporters,urea transmembrane transporters" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10300.1" /inference="similar to AA sequence:Phytozome:GSVIVT01022810001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12066t2" CDS complement(join(34260227..34260480,34260798..34261447, 34261819..34262057,34262146..34262408,34262496..34262716, 34262836..34262918,34262998..34263093,34263174..34263281, 34264536..34264712)) /locus_tag="TCM_016744" /codon_start=1 /product="Solute:sodium symporters,urea transmembrane transporters" /protein_id="EOY25434.1" /db_xref="Phytozome:GSVIVT01022810001" /db_xref="TAIR:AT5G45380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KD71" /translation="MTTRCPPFEFSATYYHIQEAVGCVRQSSFFEGKAVLNQGLGYAV ILGFGAFFAIFTSFLVWLEKRYVGSHHTSEWFNTAGRNVKTGLIASVIVSQWTWAATI LQSSNVAWEYGISGPFWYASGATIQVLLFGVMAIEIKRKAPHAHTVCEIVKARWGKAA HIVFLAFCLLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKAT FLASYIHSVFVHVALVIFVYLVYTASDKLGSPSIVYDRLREIASKSRICHEPISHNGQ SCGPISGNYKGSYLTMLSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHRGY LLGGLVWFAVPFSLATSLGLGALALDLPLTEDEASHGLVPPATAIALMGKGGSLLLLM MLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGKKILSVSRAVVLGFGCFMGLFA VILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAMGAILGTIVGCIFGIITWL SVAAVEYGRVNHDTSGRNAPMLAGNLVSILTGGAIHAVCSLLWPHNYNWDTTRQITIV EKEESDLPAEEFKEEKLKKAKSWIMKWGVGFTIVIVILWPLLSLPAGEFSVGYFTFWA VIAIAWGTIGSAVIIALPLIESWETIKSVYVGMFTNDRLMEKVEEMNFKLNSIMLAIP EAEKSYLLEKEKAK" gene 34265481..34268863 /locus_tag="TCM_016745" /note="dbxref CacaoGD:Thecc1EG016745" mRNA join(34265481..34265555,34265660..34266089, 34267400..34267528,34267891..34268379,34268497..34268863) /locus_tag="TCM_016745" /product="Alternative oxidase 1B" /inference="alignment:exonerate-protein:2:frave:gene24637" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007483t1" /inference="similar to AA sequence:TAIR:AT3G22370.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1465t1" CDS join(34265515..34265555,34265660..34266089, 34267400..34267528,34267891..34268379,34268497..34268556) /locus_tag="TCM_016745" /note="paralog of Thecc1EG007483t1" /codon_start=1 /product="Alternative oxidase 1B" /protein_id="EOY25435.1" /db_xref="TAIR:AT3G22370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39219" /translation="MREFSTFKKQISIAQSLYKLKPLLKPCKNNLSCHQNKNPTNYDR YPFVFDPKLLRMMMSRGGTRLASSMLAFVGPRYFSTASARTLSNEGMSGWIRAPAVGV RCRSTLALGDKEQEEKQAVGGGPAKDEKGIVSYWGLEPTKVTKEDGSAWKWTCFRPWE AYKADLSIDLKKHHAPVTVMDKMAYWTVKALRWPTDLFFQRRYGCRAMMLETVAAVPG MVGGMLLHCKSLRGFEHSGGWIKALLEEAENERMHLMTFMEVAKPRWYDRALVLAVQG VFFNAYFLGYIISPKFAHRMVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAIDYWR LAPDSTLRDVVMVVRADEAHHRDVNHFASDIHYQGRQLREAPAPLGYH" mobile_element 34266117..34267167 /note="source:CACAO_on_E215_scaffold_3 1 1051" /mobile_element_type="transposon:TIR/hAT" gene complement(34269146..34273865) /locus_tag="TCM_016746" /note="dbxref CacaoGD:Thecc1EG016746" mRNA complement(join(34269146..34270024,34271017..34271209, 34271302..34271357,34272989..34273647)) /locus_tag="TCM_016746" /product="Ribonuclease P protein subunit P38-related isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g34790.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s01220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06618t00001" CDS complement(join(34269671..34270024,34271017..34271209, 34271302..34271357,34272989..34273588)) /locus_tag="TCM_016746" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ribonuclease P protein subunit P38-related isoform 1" /protein_id="EOY25436.1" /db_xref="Phytozome:POPTR_0001s01220.1" /db_xref="TAIR:AT3G45900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUD9" /translation="MAPPSEGEENEQQTQREEIQKLLSSYLGVSFSVFLAFIPNYSLS LLPKLQTQMRELTARLLTAEEQLRQMKSRRKEDSKANARVVEIFASHRNAWQAEEKQL LQQIEDQRAKIEELERETHESKRRIEELQDMIGFISTTRAAAEEEEMEEESAAENTRE DHVNFTGVVNVGHDGNFPFTPDFLASASSKFWAENTTLWQDVQYESLESLYHMKHFVA RRESPWKVDGESTGVSSKLKLLEQELSNLEKIGKSDLSRVPSLMRKQAKRYQAFTAKI DDLCRRMQASEPSEPTVSPEFRTQRQTEFLLEAFRLQQRASETGQKLMALQTEVGKSY YRDDLGSPAKLATKRSMDSIRNNLQEIQRNLEIWLARIIGDLEGILARDGSSCVRECC VSRYPFVQ" mobile_element complement(34270482..34270527) /note="source:CACAO_M_E34540_F17_scaffold_5 1239 1286" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(<34270762..34270790,34271017..34271209, 34271302..34271357,34272989..34273865)) /locus_tag="TCM_016746" /product="Ribonuclease P protein subunit P38-related isoform 2" /inference="similar to AA sequence:Phytozome:POPTR_0001s01220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc816t4" CDS complement(join(<34270764..34270790,34271017..34271209, 34271302..34271357,34272989..34273588)) /locus_tag="TCM_016746" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ribonuclease P protein subunit P38-related isoform 2" /protein_id="EOY25437.1" /db_xref="Phytozome:POPTR_0001s01220.1" /db_xref="TAIR:AT3G45900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUD9" /translation="MAPPSEGEENEQQTQREEIQKLLSSYLGVSFSVFLAFIPNYSLS LLPKLQTQMRELTARLLTAEEQLRQMKSRRKEDSKANARVVEIFASHRNAWQAEEKQL LQQIEDQRAKIEELERETHESKRRIEELQDMIGFISTTRAAAEEEEMEEESAAENTRE DHVNFTGVVNVGHDGNFPFTPDFLASASSKFWAENTTLWQDVQYESLESLYHMKHFVA RRESPWKVDGESTGVSSKLKLLEQELSNLEKIGKSDLSRVPSLMRKQAKRYQAFTAKI DDLCRRMKPLEECKIL" gene complement(34274884..>34276535) /locus_tag="TCM_016747" /note="dbxref CacaoGD:Thecc1EG016747" mRNA complement(join(34274884..34275237,34275348..34275410, 34275530..34275647,34276473..>34276535)) /locus_tag="TCM_016747" /product="Acyl-CoA-binding protein 6 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10270.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037562t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10270.2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00085t00005; inference alignment:Newbler:10:TSA:cgbaP1_g01404t00001" mRNA complement(join(34274944..34275237,34275348..34275410, 34275530..34275647,34276121..34276228,34276473..34276535)) /locus_tag="TCM_016747" /product="Acyl-CoA-binding protein 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10270.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037562t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10270.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01404t00001; inference alignment:Newbler:10:TSA:cgbaP1_g01404t00001" CDS complement(join(34275158..34275237,34275348..34275410, 34275530..34275647,34276473..>34276535)) /locus_tag="TCM_016747" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037562t1" /codon_start=1 /product="Acyl-CoA-binding protein 6 isoform 2" /protein_id="EOY25439.1" /db_xref="Phytozome:POPTR_0003s10270.2" /db_xref="TAIR:AT1G31812.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P57752" /translation="ITRRWSLRLQFIYCERKMGLKEEFEEYAEKAKTLPETTTNENKL ILYGLFKQATVGPVNTSRPGMFNMRERYKWDAWKAVEGKSKEEAMSDYITKVKQLLEE AAASS" CDS complement(join(34275158..34275237,34275348..34275410, 34275530..34275647,34276121..34276228,34276473..34276484)) /locus_tag="TCM_016747" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037562t1" /codon_start=1 /product="Acyl-CoA-binding protein 6 isoform 1" /protein_id="EOY25438.1" /db_xref="Phytozome:POPTR_0003s10270.2" /db_xref="TAIR:AT1G31812.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P57752" /translation="MGLKIWKFQAFYSTGWIQEVNKYVDLFLVLSISYYCFLLQEEFE EYAEKAKTLPETTTNENKLILYGLFKQATVGPVNTSRPGMFNMRERYKWDAWKAVEGK SKEEAMSDYITKVKQLLEEAAASS" gene complement(34276883..34295937) /locus_tag="TCM_016748" /note="dbxref CacaoGD:Thecc1EG016748" mRNA complement(join(34276883..34277509,34277723..34277943, 34278199..34278277,34279061..34279125,34279788..34279895, 34281319..34281372,34281451..34281517,34282123..34282188, 34282271..34282348,34282419..34282471,34291304..34291337, 34291416..34291452,34292545..34292633,34293239..34293361, 34293449..34293553,34293666..34293770,34294368..34294583, 34294686..34294832,34294989..34295209,34295320..34295937)) /locus_tag="TCM_016748" /product="RECQ helicase L2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10340.1" /inference="similar to AA sequence:Phytozome:GSVIVT01036944001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12104t2" CDS complement(join(34277312..34277509,34277723..34277943, 34278199..34278277,34279061..34279125,34279788..34279895, 34281319..34281372,34281451..34281517,34282123..34282188, 34282271..34282348,34282419..34282471,34291304..34291337, 34291416..34291452,34292545..34292633,34293239..34293361, 34293449..34293553,34293666..34293770,34294368..34294583, 34294686..34294832,34294989..34295209,34295320..34295383)) /locus_tag="TCM_016748" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RECQ helicase L2 isoform 1" /protein_id="EOY25440.1" /db_xref="Phytozome:GSVIVT01036944001" /db_xref="TAIR:AT1G31360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FT73" /translation="MEAEEIAEELQDVEVEIQDVEDQISALLERQEKLYERQSELTAL LETCPVAVKHDSARTTVQVEDWSGPFDWDSRADDIRFNVFGISSYRPNQREIINAVMS GRDVLVIMAAGGGKSLCYQLPAILRQGIALVVSPLLSLIQDQVMGLTASGIPAFMLTS TTNKEDEKFIYKALEKGEGDIKLLYVTPEKISKSKRFMSKLEKCYHAARLSLISIDEA HCCSQWGHDFRPDYKNLGILKTQFPNVPVVALTATATLKVQNDLMEMLRVPKCLKFVS TVNRPNLFYMVREKSSVGKVVIDEITEYIKESYPNNESGIVYCFSRKECEQVASELCE RGISAGYYHADMDVNAREKVHMKWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKS METYYQESGRAGRDGLPSECLIFFRPADVPRQSSMVFYEKSGLQNLYDIVRYCQSKRQ CHRGAFFQHFAEPLQECNGMCDSCAFSSEVKEVDASCQAKLMISLVHDMQENNQRVTM LQLVDRVKNKQKQLDLKLKREELEQLVVQLILDRVLKEDFQHTAYATNAYITVGTSAN QILQGKKIVKMEVAGRSKVMDSYRKSIKHGVTSGLEFKLDELRKELASSHNGEIFPHS VLSGQQISIISTKKPSSTEELEMIIGKLKTEKYGDRILGEVKKYGIAEQLNDNVLEEE QGTEKRPRKKLKTKEEVVVLTESSNDE" mRNA complement(join(34277532..34277943,34278199..34278277, 34279061..34279125,34279788..34279895,34281319..34281372, 34281451..34281517,34282123..34282188,34282271..34282348, 34282419..34282471,34291304..34291337,34291416..34291452, 34292545..34292633,34293239..34293361,34293449..34293553, 34293666..34293770,34294368..34294583,34294686..34294832, 34294989..34295209,34295320..34295412)) /locus_tag="TCM_016748" /product="RECQ helicase L2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10340.1" /inference="similar to AA sequence:Phytozome:GSVIVT01036944001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1470t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12104t2" CDS complement(join(34277648..34277943,34278199..34278277, 34279061..34279125,34279788..34279895,34281319..34281372, 34281451..34281517,34282123..34282188,34282271..34282348, 34282419..34282471,34291304..34291337,34291416..34291452, 34292545..34292633,34293239..34293361,34293449..34293553, 34293666..34293770,34294368..34294583,34294686..34294832, 34294989..34295209,34295320..34295383)) /locus_tag="TCM_016748" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RECQ helicase L2 isoform 2" /protein_id="EOY25441.1" /db_xref="Phytozome:GSVIVT01036944001" /db_xref="TAIR:AT1G31360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FT73" /translation="MEAEEIAEELQDVEVEIQDVEDQISALLERQEKLYERQSELTAL LETCPVAVKHDSARTTVQVEDWSGPFDWDSRADDIRFNVFGISSYRPNQREIINAVMS GRDVLVIMAAGGGKSLCYQLPAILRQGIALVVSPLLSLIQDQVMGLTASGIPAFMLTS TTNKEDEKFIYKALEKGEGDIKLLYVTPEKISKSKRFMSKLEKCYHAARLSLISIDEA HCCSQWGHDFRPDYKNLGILKTQFPNVPVVALTATATLKVQNDLMEMLRVPKCLKFVS TVNRPNLFYMVREKSSVGKVVIDEITEYIKESYPNNESGIVYCFSRKECEQVASELCE RGISAGYYHADMDVNAREKVHMKWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKS METYYQESGRAGRDGLPSECLIFFRPADVPRQSSMVFYEKSGLQNLYDIVRYCQSKRQ CHRGAFFQHFAEPLQECNGMCDSCAFSSEVKEVDASCQAKLMISLVHDMQENNQRVTM LQLVDRVKNKQKQLDLKLKREELEQLVVQLILDRVLKEDFQHTAYATNAYITVGTSAN QILQGKKIVKMEVAGRSKVMDSYRKSIKHGVTSGLEFKLDELRKELASSHNGEIFPHS VLSGQQISIISTKKPSSTEEACLKVSNSSLVCLAYHMLDNQLLE" mRNA complement(join(<34278200..34278277,34279061..34279125, 34279788..34279895,34281319..34281372,34281451..34281517, 34282123..34282188,34282271..34282348,34282419..34282471, 34291304..34291337,34291416..34291452,34292545..34292633, 34293239..34293361,34293449..34293553,34293666..34293770, 34294368..34294583,34294686..34294832,34294989..34295209, 34295320..34295412)) /locus_tag="TCM_016748" /product="RECQ helicase L2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10340.1" /inference="similar to AA sequence:Phytozome:GSVIVT01036944001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc1470t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12104t2" CDS complement(join(<34278200..34278277,34279061..34279125, 34279788..34279895,34281319..34281372,34281451..34281517, 34282123..34282188,34282271..34282348,34282419..34282471, 34291304..34291337,34291416..34291452,34292545..34292633, 34293239..34293361,34293449..34293553,34293666..34293770, 34294368..34294583,34294686..34294832,34294989..34295209, 34295320..34295383)) /locus_tag="TCM_016748" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RECQ helicase L2 isoform 3" /protein_id="EOY25442.1" /db_xref="Phytozome:GSVIVT01036944001" /db_xref="TAIR:AT1G31360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FT73" /translation="MEAEEIAEELQDVEVEIQDVEDQISALLERQEKLYERQSELTAL LETCPVAVKHDSARTTVQVEDWSGPFDWDSRADDIRFNVFGISSYRPNQREIINAVMS GRDVLVIMAAGGGKSLCYQLPAILRQGIALVVSPLLSLIQDQVMGLTASGIPAFMLTS TTNKEDEKFIYKALEKGEGDIKLLYVTPEKISKSKRFMSKLEKCYHAARLSLISIDEA HCCSQWGHDFRPDYKNLGILKTQFPNVPVVALTATATLKVQNDLMEMLRVPKCLKFVS TVNRPNLFYMVREKSSVGKVVIDEITEYIKESYPNNESGIVYCFSRKECEQVASELCE RGISAGYYHADMDVNAREKVHMKWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKS METYYQESGRAGRDGLPSECLIFFRPADVPRQSSMVFYEKSGLQNLYDIVRYCQSKRQ CHRGAFFQHFAEPLQECNGMCDSCAFSSEVKEVDASCQAKLMISLVHDMQENNQRVTM LQLVDRVKNKQKQLDLKLKREELEQLVVQLILDRVLKEDFQHTAYATNAYITVGTSAN QILQ" mobile_element 34281758..34281862 /note="source:scaffold_6_CACTA_0706 1119 1221" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34283637..34283709) /note="source:scaffold_1_CACTA_0008 11246 11321" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34285031..34285582 /note="source:INTACT123_F40_scaffold_10-int 2727 3272" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 34285583..34285837 /note="source:CACAO_M_E69963_F29_scaffold_9 1 255" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 34285843..34289741 /note="source:INTACT72_F29_scaffold_3-int 1049 4953" /mobile_element_type="retrotransposon:LTR/Copia" gene 34287379..34289730 /locus_tag="TCM_016750" /note="dbxref CacaoGD:Thecc1EG016750" mRNA join(34287379..34287593,34287681..34288072, 34288196..34288356,34288504..34288681,34288754..34288938, 34289099..34289730) /locus_tag="TCM_016750" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="alignment:exonerate- protein:2:frave:gene29253.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036284t1" /inference="similar to AA sequence:Phytozome:Glyma01g29320.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.74 coverage" CDS join(34287424..34287593,34287681..34288072, 34288196..34288356,34288504..34288681,34288754..34288938, 34289099..34289494) /locus_tag="TCM_016750" /note="paralog of Thecc1EG036284t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY25443.1" /db_xref="Phytozome:Glyma01g29320.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BS42" /translation="MFVSLDVSFLEDQHFYPNPTLQGKILGEEKLSDCLIPLPVIADI PETPPGNKDLPIINKKPQEVQAFTHQPCCQESNPQVNAETETEIIGASDTSNLPQLET QPSELDIPMALRKGVRTCTQHSISNYLYYSQQSKAFRALIEKIERDEIPKNVQEAFEK PEWRAAVLEEMKALKRNGTWDVVELLEETFASVAKLNTIRVLLSLASTLDWALHQMDV KNAFLNGELDEEVYTDLPPGFEGHSQDGKKTILIVYMDDIILTGDDTEEMERLKKTLR SEFEIKGLGQLRSFLEMEVARSKKAETPIVKNMKLGRTRSGIPVDRGRYQRLVGRLIY LSHTRPDIAFAVSVVSQYMHSPSEEQLEGNLVSWRSKKQPVVARSSAKAEFRALAQGT CELIWLKRLMEELKVSSIGPMKLYCDNKTAISIAHNPVHHDRTKHVEIDRHFIKEKID GVICMTYVPTKQQIADVLTKGLPRPSFEVLVDKLGMTNIYSPA" mobile_element complement(34289744..34291288) /note="source:CACAO_M_S_E66869_F40_scaffold_6 1 1582" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 34296117..34296266 /note="source:CACAO_MITE_S84_scaffold_3 775 928" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(34296869..34296912) /note="source:scaffold_7_CACTA_0785 12039 12082" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34297121..34297539) /note="source:scaffold_5_CACTA_0614 15 438" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34299385..34299753) /note="source:MITE_PIF_Tourist_7 9 404" /mobile_element_type="transposon:TIR/MITE" gene 34299742..34312315 /locus_tag="TCM_016751" /note="dbxref CacaoGD:Thecc1EG016751" mRNA join(34299742..34300046,34300315..34300423, 34300517..34301220,34301302..34301523,34301719..34302484, 34302561..34303167,34303575..34303704,34304710..34304781, 34306182..34306280,34307915..34307956,34308036..34308116, 34308213..34308263,34308378..34308459,34308544..34308638, 34309314..34309385,34309482..34309598,34311043..34311111, 34311200..34311266,34311380..34311859,34311935..34312315) /locus_tag="TCM_016751" /product="Formin" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10280.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s10280.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc89t12" CDS join(34300351..34300423,34300517..34301220, 34301302..34301523,34301719..34302484,34302561..34303167, 34303575..34303704,34304710..34304781,34306182..34306280, 34307915..34307956,34308036..34308116,34308213..34308263, 34308378..34308459,34308544..34308638,34309314..34309385, 34309482..34309598,34311043..34311111,34311200..34311266, 34311380..34311573) /locus_tag="TCM_016751" /codon_start=1 /product="Formin" /protein_id="EOY25444.1" /db_xref="Phytozome:POPTR_0003s10280.1" /db_xref="TAIR:AT1G31810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C6S1" /translation="MSLLSRFFYRRPPDGLLEFVERVYVFDSCFSTEVLPDGMYQVYL HEIVTELQEEFPESSFLAFNFREGEKPSHFAEILCQYDVTVLDYPRQYEGCPLLPLSL IQHFLRVCESWLSLGNHQNVILLHCERGAWPLLAFLLASFLIFKKLHSGERKTLEIVH REAPKGFLQLLSPLNPFPSQLRYLQYVSRRNIAPEWPPPERALSLDCLILRAIPSFDA QNGCRPIIRIFGRNIRGRDGLSTQMLFSMSKKRKMLRHYHQADCDVIKIDIQCLVQGD VVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNSENLDILWDSKERYPKGFRAEV LFGEVENSSPPKAPITILNGEEKGGLPIEAFSRVQELFSGVEWVDNSDDAALWLLKHL SVLSDVKELSILQNKGNLYECPADSEEENNAYGTADSSDEAFDVNNKPSVDPAKSLPP DIVDTVLIHLESDGLQDLNHASGTLNQASVETVQIVSSPGTRSCSSSPQPASPPSLSS IPTTCPPPPPPPPLISGKSLSVRYAPPPPPPPPPLPLVSPSHLPSSINIIKPLSPPPP PPPLPSFSDGNSRTSLLATAKRAEMAHHPFSAFVKSFHQPQPYLLVPLHRNHHPRPAP PPPLPPPLVSSSLGSKSNKLEPYPPPPPPMAISSTSSSHEGVPHVHTKVPRPPPPPPP IGPAWSAPIPPPPPPVPKPPAAPPPPPGYNAMVGPRPPGAKVSNVPPPPPPSIGRGKA MGQTGHARGRVIGVSNAPKRTSLKPLHWVKVTRAMQGSLWADSQKQDNQSRAPEIDMS ELESLFSAASVSDGHGTNKLGGRRGSNINKPEKVQLVDLRRAYNCEIMLTKIKIPLPD MLNAVLALDSSALDIDQVENLIKFCPTKEEMELLKNYMGDKAMLGKCEQFFLELMKVP RVESKLRVFAFRITFSSQVDDLRSNLNTINNVAREVKESMKLRQIMQTILTLGNALNQ GTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLSHLEAA SKIQLKTLAEEMQAVSKGLEKVEQELTASDNDGAISMGFQKVLKNFLDTAEAEVRSLI SLYSEVGRNADSLSQYFGEDPARCPFEQVTQILVVFVKMFNKSREENERLADAEKKKL EKEGMKERAAANLTAKKDGADEPNLSSQIQKHAP" mobile_element complement(34310009..34310120) /note="source:CACAO_M_S_E16386_F9_scaffold_2 2030 2142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34312201..34313146 /note="source:scaffold_4_CACTA_0511 12878 13830" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34315001..34315279 /note="source:scaffold_9_CACTA_0932 963 1242" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34315409..34315574) /note="source:CACAO_M_E23991_F4_scaffold_4 2938 3121" /mobile_element_type="retrotransposon:LTR/Copia" gene 34315692..34327357 /locus_tag="TCM_016752" /note="dbxref CacaoGD:Thecc1EG016752" mRNA join(34315692..34315910,34317160..34317449, 34317621..34317689,34317773..34317910,34318017..34318134, 34318665..34318747,34318872..34318967,34319572..34319740, 34319823..34319965,34320045..34320131,34320235..34320420, 34320911..34321078,34322768..34322888,34323008..34323077, 34323468..34323555,34323660..34323780,34324236..34324429, 34324522..34324630,34324838..34324993,34325357..34325459, 34325850..34326023,34326550..34326695,34327004..34327357) /locus_tag="TCM_016752" /product="Heteroglycan glucosidase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022815001" /inference="similar to AA sequence:Phytozome:GSVIVT01022815001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12149t2" mRNA join(34315810..34315910,34317146..34317449, 34317621..34317689,34317773..34317910,34318017..34318134, 34318665..34318747,34318872..34318967,34319572..34319740, 34319823..34319965,34320045..34320131,34320235..34320420, 34320911..34321078,34322768..34322888,34323008..34323077, 34323468..34323555,34323660..34323780,34324236..34324429, 34324522..34324630,34324838..34324993,34325357..34325459, 34325850..34326023,34326550..34326695,34327004..34327305) /locus_tag="TCM_016752" /product="Heteroglycan glucosidase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022815001" /inference="similar to AA sequence:Phytozome:GSVIVT01022815001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04144t00001; alternateUTRof:Thecc1EG016752t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc3g12149t2; inference alignment:Newbler:10:TSA:cgbaL_g14818t00001" CDS join(34317198..34317449,34317621..34317689, 34317773..34317910,34318017..34318134,34318665..34318747, 34318872..34318967,34319572..34319740,34319823..34319965, 34320045..34320131,34320235..34320420,34320911..34321078, 34322768..34322888,34323008..34323077,34323468..34323555, 34323660..34323780,34324236..34324429,34324522..34324630, 34324838..34324993,34325357..34325459,34325850..34326023, 34326550..34326695,34327004..34327197) /locus_tag="TCM_016752" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Heteroglycan glucosidase 1 isoform 1" /protein_id="EOY25445.1" /db_xref="Phytozome:GSVIVT01022815001" /db_xref="TAIR:AT3G23640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Y12" /translation="MSKMASSEVKEAASDSTAGKMIFEPILEDGVFRFDCSANDRDAA YPSLSFMNSNDRDVPIMSNKVPLYIPSFEFLLGQQLVKLELPVGTSFYGTGEVSGQLE RTGKKVFTWNTDAWGYGPGTTSLYQSHPWVLAVLPNGEALGILADTTRRCEIDLRIKC RIQFNAPASFPVITFGPFPSPSAVLISLSHAIGTVFMPPKWSLGYHQCRWSYDSEERV LEVARKFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLVKDLHHIGFKAIWML DPGIKHEKGYFVYDSGTEHDAWIQEANGMYFVGDVWPGPCVFPDFTQSKIRSWWANLV RDFISNGVDGIWNDMNEPAIFKAVTKTMPESNIHRGDNELGGHQSHAHYHNAYGMLMA RSTYEGMELADKRKRPFVLTRAGFIGSQRYAAMWTGDNLSNWEHLHMSISMVLQLGLS GQPLSGPDIGGFAGNATPKLFGRWMGFGAMFPFCRGHSETDTINHEPWSFGEECEDVC RLALRRRYRLIPHIYTLFYMAHTRGTPVATPAFFADPKDPNLRTLESCFLLGPLLVYA STMPDLGSDKLQLLLPKGIWLSFDFDDSHPDLPALYLQGGSIIPVGPPLQHIGESNPS DDLTLILALDNYGKAEGVLFEDDGDGYGFTKGEYLLTHYVAELKSSVITVRISETKGV WKRPNRRLHVQLLIGEGAMLDAWGIDGEVLQIEMPSETEVSKLISTRKVHNKMHLESV KLIPNVEDVSGHKGGELSRTPIELENGDWSLQIVPWIGGRIISMVHVPSGRQWLHSRV EINGYEEYGGTEYRSAGCSEEYHVVQRDVEHAVEEESVLLEGDIGGGLILQRQITIPK DNPKVFRVESSILARKVGSGSGGFSRLVCLRVHPTFSLLHPTESFVAFTSIDGSKQEV WPESGEQLYEGNLLPNGEWMLVDKCLGLGLINRFNVRDVYKCLIHWGTGTVNLELWSE DRPVSKQSPLRVFHEYEVMEIP" CDS join(34317198..34317449,34317621..34317689, 34317773..34317910,34318017..34318134,34318665..34318747, 34318872..34318967,34319572..34319740,34319823..34319965, 34320045..34320131,34320235..34320420,34320911..34321078, 34322768..34322888,34323008..34323077,34323468..34323555, 34323660..34323780,34324236..34324429,34324522..34324630, 34324838..34324993,34325357..34325459,34325850..34326023, 34326550..34326695,34327004..34327197) /locus_tag="TCM_016752" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Heteroglycan glucosidase 1 isoform 1" /protein_id="EOY25446.1" /db_xref="Phytozome:GSVIVT01022815001" /db_xref="TAIR:AT3G23640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Y12" /translation="MSKMASSEVKEAASDSTAGKMIFEPILEDGVFRFDCSANDRDAA YPSLSFMNSNDRDVPIMSNKVPLYIPSFEFLLGQQLVKLELPVGTSFYGTGEVSGQLE RTGKKVFTWNTDAWGYGPGTTSLYQSHPWVLAVLPNGEALGILADTTRRCEIDLRIKC RIQFNAPASFPVITFGPFPSPSAVLISLSHAIGTVFMPPKWSLGYHQCRWSYDSEERV LEVARKFREKGIPCDVIWMDIDYMDGFRCFTFDKERFPDPKSLVKDLHHIGFKAIWML DPGIKHEKGYFVYDSGTEHDAWIQEANGMYFVGDVWPGPCVFPDFTQSKIRSWWANLV RDFISNGVDGIWNDMNEPAIFKAVTKTMPESNIHRGDNELGGHQSHAHYHNAYGMLMA RSTYEGMELADKRKRPFVLTRAGFIGSQRYAAMWTGDNLSNWEHLHMSISMVLQLGLS GQPLSGPDIGGFAGNATPKLFGRWMGFGAMFPFCRGHSETDTINHEPWSFGEECEDVC RLALRRRYRLIPHIYTLFYMAHTRGTPVATPAFFADPKDPNLRTLESCFLLGPLLVYA STMPDLGSDKLQLLLPKGIWLSFDFDDSHPDLPALYLQGGSIIPVGPPLQHIGESNPS DDLTLILALDNYGKAEGVLFEDDGDGYGFTKGEYLLTHYVAELKSSVITVRISETKGV WKRPNRRLHVQLLIGEGAMLDAWGIDGEVLQIEMPSETEVSKLISTRKVHNKMHLESV KLIPNVEDVSGHKGGELSRTPIELENGDWSLQIVPWIGGRIISMVHVPSGRQWLHSRV EINGYEEYGGTEYRSAGCSEEYHVVQRDVEHAVEEESVLLEGDIGGGLILQRQITIPK DNPKVFRVESSILARKVGSGSGGFSRLVCLRVHPTFSLLHPTESFVAFTSIDGSKQEV WPESGEQLYEGNLLPNGEWMLVDKCLGLGLINRFNVRDVYKCLIHWGTGTVNLELWSE DRPVSKQSPLRVFHEYEVMEIP" mobile_element 34321454..34321994 /note="source:CACAO_Again_on_S_E61_scaffold_2 2 542" /mobile_element_type="transposon:TIR/hAT" mobile_element 34328385..34328493 /note="source:scaffold_5_CACTA_0584 12288 12393" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34329125..34329887) /note="source:CACAO_on_E373_scaffold_1 4 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 34331173..34331663 /note="source:CACAO_LINE_E_87_scaffold_3 6 494" /mobile_element_type="retrotransposon:LINE/L1" gene complement(34331212..34340451) /locus_tag="TCM_016753" /note="dbxref CacaoGD:Thecc1EG016753" mRNA complement(join(34331212..34331891,34332408..34333086, 34333192..34333284,34333359..34333994,34334328..34335128, 34335210..34335310,34335842..34335917,34336185..34336354, 34336508..34337263,34337359..34337490,34337680..34338970, 34339140..34339527,34339942..34340451)) /locus_tag="TCM_016753" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400067937" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400054729" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete; weak similarity to Retrotransposon protein, unclassified" CDS complement(join(34331398..34331891,34332408..34333086, 34333192..34333284,34333359..34333994,34334328..34335128, 34335210..34335310,34335842..34335917,34336185..34336354, 34336508..34337263,34337359..34337380)) /locus_tag="TCM_016753" /note="weak similarity to Retrotransposon protein, unclassified" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25447.1" /db_xref="Phytozome:PGSC0003DMP400054729" /translation="MSAYPFPDMQEPWLAGGDFNTILSREERLFGAEPNAGLMEEFAT TLFDCGLLDAGFEENKFTWTNTHMFQRLDQVVCNMEWASFFSYTRIHHLNRDGSDHCP LLISCCNFSLQRPSSFRFLHAWVKHHEFFNFVANSWKQPIHGNGLMAFWNKQQQLKKS LKGWNKDVFGDIFSNLRAVEKTAEENELAFQHDPSVINRTQLQRASAKLNNQLSMEKM FWQQKSRVKWLVEGERNTRFFHMRMQKKRVKISIFKIQDSEELRLQEVKDAVFAIDKD SVAGLDGFSSFFYQQCWPIIVEDLLAAVRDFFKGAAFPRGLDMMKAYDRLNWDFLSLV LERFGFNGWENKILSPGSRITLLRSVLSSMPIYLLQVLKPPTAWHNITFPSSEGGLDI CSLKDFFDAFSTKLWWRFDTCQSLWARYMRLKYCTGQIHHNIAPKPHDSATWKRLIDG RVTASQQIRWRIGKGDIFFWHDAWMGDEPLVNSFPSFSQSMMKVNYFFNDDAWDVDKL KTVIPNAIVDEILKIPISRENEDIAYWALTPNGDFSTKSAWELLRQRKQVNLVGQLIW HNPNPDPISPSLFILAAEYLSRGLNQLFSRYNSLHYLSGCSMPVSHLAFADDIVIFTN GCHSALQKILAFLQEYEQRLFNSFLWGDSNEGKRMHWATWNKITFPSSEGGLDIRNLK DVFDAFTLKLWWRFYTCDSLWTHFLKTKYCLGRIPQYMQPKLHNSSIWKRMTGGQDVV IQNIRWKIGKGELFSWHDCWMGDQPLVISFPSFRNDMSSVHKFYKGDSWDVDKLRLFL PVNLINEILPIPFDRTQQDVAYWTLTSNGEFSTWSAWETIRQWQSHNTLALSFGIEEK GIHLVSKCVCCNSEESLMHVLWGNSVAKQGRIRTLLPIFICWFLWLERNDAKHRHSGL YTDRVVWRIMTLLRQLQDDSLLQQWQWKGDTDIAAMWRYNFQLKQRAPPQIVYWRKPF TGEYKLNVDGSSRNGQHAASGGVLRDHTSKLIFCFSENIGTYNSLQAELRALHRGLLL CKERHIEKLWIEMDALAVIQLIPHSQKGSHDIRYLLESIKKCLNSISYRISHIFREGN QAADFLSNEGHNHQNLRVFTKAQGPPNSEPSTQVNILLHGEDRQTSENAMGVQHVSMA NIEGSGEYSPPIGQGTSKTVSSILGQPNEQHNKSRERMEGQADIPPTQESALGKCMHN KELSDVPSFPSLSETKFTEIEVHPRIRHRRHSDIEVSIDKILSFASDKAVDMRENDED SDEDAISMNFTAS" gene complement(34339732..34347167) /locus_tag="TCM_016754" /note="dbxref CacaoGD:Thecc1EG016754" mRNA complement(join(34339732..34340353,34341201..34341381, 34342197..34342579,34344393..34344525,34344857..34345428, 34345669..34345762,34346069..34347167)) /locus_tag="TCM_016754" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400045104.2" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(34339938..34340353,34341201..34341381, 34342197..34342579,34344393..34344525,34344857..34345428, 34345669..34345762,34346069..34346896)) /locus_tag="TCM_016754" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25448.1" /translation="MPRMNEIRLAFKGIGLTGAYDLRWLDYKHILIHLTNQHDFNRIW IRQVWFIANQKLRVFKWSPDFQPEKESSLVSVWISFPNLRTHLHEKSALMIIAKAVGK LLFADEATANGSRPSVARVCVEYDCQKQPLDHIWIVSRDQKTRAAVGGFTQRENFSKL PDYCSHCGHVGHAISECIVLGNRPDKSGVKNVLPLRVVKQSDERLNEQILQQNTVKAN VDKRSSDLLSKGGIMEPAARVTELKQNKKWQIIESQAQPGTTAAKGEEIITRKPENVL AEGGRATSTAELIAGKSKSHAERAQKNSVIVRSCTPLQLMQGERKDSGYASIHAYGDK TNEGKGHDVDQFSEGNEHPITRRHHKLQNKAKPILTKLIPSHNVDFDVGSVALLFDKT SDNDESQLKKAKEAIDEDNSAEYLKNLPLETGKCLLNKETDSVPSFADACSSSEQVSK LPNPVQYQTNLEDQISIGHPRVHRRRKSDSSLLTSIVWNFAHATDPLEGPWMVGGDFN TIMSCAERLNGAPPHGGSMEDFAATLLDCGLIDAGWENKTLSPGGRITLLRSVLSSMP MYLLQVLKPPVVVIEKIERLFNSFLWGDSTTDKRMHWVAWYKLTFPCSEGGLDIRRLN DVSDAFMMKLWWRFQTCDGLWTNFLKTKYCMGQIPHYVQSKLHDSQWKGDTDIAVMWG FTFSLNILEAPQIIHWVKPVTGEYKLNVDGSYRHNQSAATGGLLRDHTVENALSFHVF PFLPQSQGMAAGRPPDLLPTLLPVAAPSIFQSGATPNPPATENSKSPLSHGHTQGVHN KTQPSVSPRTQKKSFLAVAAGEKASLIPLDREPFWYKDRPTASFFDDEISTLAQPFKF SMVGKFFRMPRM" gene complement(34340569..34354422) /locus_tag="TCM_016755" /note="dbxref CacaoGD:Thecc1EG016755" mRNA complement(join(34340569..34341782,34342062..34342314, 34349559..34350867,34351636..34351900,34352212..34354422)) /locus_tag="TCM_016755" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040846.20" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011923t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete; weak similarity to RNA-directed DNA polymerase (Reverse transcriptase)" CDS complement(join(34342179..34342314,34349559..34350867, 34351636..34351900,34352212..34354239)) /locus_tag="TCM_016755" /note="paralog of Thecc1EG011923t1; weak similarity to RNA-directed DNA polymerase (Reverse transcriptase)" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25449.1" /translation="MPDYCLHCCHVGHKDVHCIVLGNKPPGSGKPLPKANASSTRPAD GEKLTTKHTNDEGKALANKQKDDPMSSKGMAQKNSEERPTATGGEAVVVFEKRKKNLS REVPTKQNTQWQAVGHLDRSAVTVSVGAEKVLDDEGTEQCKGSNRFAILNSVEEDKNE GPIWMGKQRQTEYVNSTPAKKNSLPGLQVETGGRRDNSVIGFSGLHEGRWLGNDDPKT KQQQQCLMETGEKRHVENNAANAEATPSLFPTHEERAEKDLIHVRIEGSLQNEGVPYE AEKCEDRREVIASVAIGDEIAAAERTTCMNRGISAAVQKQKMAERRSAKEGGDDRQKG ISTAKREQQQQQIKKKGDEAEQVICRRSERQIGESCAAQQAEGGRTTSTAELVAGKAK SHAERAQKNSVIVSHRSSAQGRTSSEHVSAFAEKNTAPGVLLSKNVNQKNDNSLYDGT VQQQKIEITAPKKSQNKPVAIEEETDETEAVKCTSGSFTPLQFMQGERKDSGYTSIHA NEDKTIEGKGHDVDDFSEGNELPITRRHHKLQNKAKPILAKLIPSLNVDFDVGPATLL FDKTSHIDGSQQRKAKAAIDDDNRAEYLKNLPSETGKCLLNTETDSVPSIADTCSSSE QVSKLPNPVQYQTNLEDQMSIGHPRVHRRRKSDSSLLTSIVWNSAHATDPLECLHVKI SLPWLPHPFAATFVYAKCTRQERLELWNCLRSLSLDMQGPWMVGGDFNTIVSCAERLN GAPPHGGSMEDFATTLLDCGLIDAAPSLKEIKDVVFNIDKDSVAGPDGFSSLFYQHCW DIIKQDLLEAVLDFFKGTPMPRGVTSTTLVLLPKKPNSCQWSDFRPISLCTVLNKIVT KLLANRLSKFLPSIISENQSGFVNGRLISDNILLAQELVGKLDAKARGGNVVLKLDMA KAYDRLSWDFLYLMMEQFGFNDRWISMIKACISNCWFSLLINGSLVGYFKSERGLRQG DSISPLLFILAAEYLSRGINQLFSDHKSLHYLSGCFMPISHLAFADDIVIFTNGCRPA LQKILIFLQEYEAVSGQQVNHQKSCFITSNGCPMTRRQIIAHTTGFQHKTLPVIYLGA PLHKGPKKVALFDSLITKIRDRISGWENKTLSPGGRITLLRSVLSSMPMYLLQVLKPP VVVIEKIERLFNSFLWGDSTTDKRMHWVAWHKLTFPCSEGGIDIRRLNDVSDAFTMKL WWRFQTCDGLWTNFLKTKYCMGQIPHYVQSKLHDSQVWKRM" mobile_element 34345899..34345947 /note="source:CACAO_M_S_E33525_F7_scaffold_4 2325 2383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34347215..34347330) /note="source:CACAO_LINE_E_197_scaffold_7 1 113" /mobile_element_type="retrotransposon:LINE/L1" gene complement(34355302..34355797) /locus_tag="TCM_016756" /note="dbxref CacaoGD:Thecc1EG016756" mRNA complement(34355302..34355797) /locus_tag="TCM_016756" /product="Senescence-associated gene 21, putative" /inference="alignment:exonerate- protein:2:ricco:29308.m000187" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029240t1" /inference="similar to AA sequence:ricco:29308.m000187" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage" CDS complement(34355465..34355722) /locus_tag="TCM_016756" /note="dbxref ricco:29308.m000187; paralog of Thecc1EG029240t1" /codon_start=1 /product="Senescence-associated gene 21, putative" /protein_id="EOY25450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T3Y6" /translation="MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVMRNATDLRAEVL AEQKETFWMRDPKTGNWIPENHFGDIDVAELREKFLSKKQK" mobile_element complement(34355836..34360791) /note="source:CACAO_LINE_E_216_scaffold_8 2819 7774" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 34362003..34363622 /note="source:CACAO_LINE_E_132_scaffold_5 6160 7766" /mobile_element_type="retrotransposon:LINE/L1" gene complement(34363700..34367847) /locus_tag="TCM_016759" /note="dbxref CacaoGD:Thecc1EG016759" mRNA complement(join(34363700..34366089,34367176..34367847)) /locus_tag="TCM_016759" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040846.23" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011921t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040846" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete; weak similarity to Ribonuclease H-like superfamily protein" CDS complement(join(34364066..34366089,34367176..34367791)) /locus_tag="TCM_016759" /note="paralog of Thecc1EG011921t1; weak similarity to Ribonuclease H-like superfamily protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25451.1" /db_xref="Phytozome:PGSC0003DMP400040846" /db_xref="TAIR:AT4G29090.1" /translation="MQAPWLVGGDFNSIVSCDERLHGAIPHDGSMEDLSSTLLDCGLL DAGFEGNSFTWTNNRMFQRLDRVVYNHEWAEFFSSTRVQHLNRDGSDHCPLLISCSNT NTRGPSTFRFLHAWTKHHDFLPFVEKSWNAPTQASGMTTLWYKQQRLKRDLKWWNKHI FGDIFKTLRLAEAEAEQRELIFQQNPSAINRDLMHKAYAKLNRQLTLQKIMVFLQEYE HVSGQKVNHQKSCFITSDGCPLSRRQIITRTTGFQHKTLPVIYLGAPLHKGPKKVFLF DSLITKIRDRISGWENKILSPGGRITLLRSVLSSLPMYLLQVLKPPAIVIEKIERLFN SFLWGDSNEGKRMHWAAWNKITFPCSEGGLDIRNLNDVFEAFTLKLWWRFQTCDSLWT HFLKTKYCLGRIPHYVHPKLHDSLVWKRMIRGREVAFRNIRWKIGKGDLFFWHDCWMG NQPLVMSFPSLRNDMSLVHNFYNGDTWDVDKLKAYLPMNLIDEILLIPFNRTQQDVAY WTLTSNGEFATWSAWETIRQRKSSNALCSFIWHRSIPLSISFFLWRALNNWIPVELRM KEKGIQLASKCVCCNSEESLMHVLWGNSVAKQVWAFFGKFFQIYVLNPQHVSQILWAW FFSGDYVKKGHIRSLLPIFICWFLWLERNDAKHRHTRLNPDRVVWRIMKLLRQLLDGS LLHQWQWKGDTDIASMWGHTFQSKHRAPPQIIYWRKPFTGEYKLNVDGSSRNGHLAAS GGILRDHTGKLIFGFSENIGLCNSLQAELRALLRGLLLCKERHIENLWIEMDALAVIQ LIQHSQKGSHDIRYLLESIRKCLSCISYRISHIFREGNQAADYLANEGHSHQNLCVIT EAQGELHGMLKLDRLNLPYVRFK" gene complement(34367937..34371547) /locus_tag="TCM_016760" /note="dbxref CacaoGD:Thecc1EG016760" mRNA complement(34367937..34371547) /locus_tag="TCM_016760" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033753t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(34368163..34371492) /locus_tag="TCM_016760" /note="paralog of Thecc1EG033753t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25452.1" /translation="MAAGRPPDPPLLAAFPPLTPIGSLPSHAPPNTNQPPPHQNLQET TPTRNPQPPSPRALKKSFLTVAVGERPPVIPPSRDPSVYKDRPAAIFYEDEIQTLARP FSHSLVGKFSRMPKLQEIRHAFKGIGLSGAYEIRWMDYKHVLIHLSNEQDFNRVWVKQ QWFIVNQKMRVFKWAPDFEAEKESAMVPVWISFPNLKAHLYEKSALLLIAKTVGKPLY VDEATANGSRPSVARVCVEYDCRKQPVEEIWIVIRNRETGAVTGGYSQRVEFARMPDY CGYCSHVGHKENECIVLGTKSKQLGYGNLQTRGKDTQARVLPSRTEDGEKTKSSTEGG KKTLQKEKNMDKDKTMCAEEPVKLNQRWQAVGRTGTSGVKDGQGREIMPEKDLDDARV QVSNSFQEIPREDEMTQNRMEENINRNGEAVGIDEMDGDRMLGEAALNGSKQHPETEA ARSIAVEGNSQENTHVHGERSSSRKNTNKTEKGPAAWVGPKSSQVVLRREAVVEQMMN AEGQNCKGDPGDGVTGAAFLATSESVRNGGQETFHENENHAQYVISRNNKKENSQQNL IGQVPDAVLHKESMQQTTRDTALGAATAGRSDASHSPNMNVQRDPALRDKNLTTTKKG DKMIGQDSTQPSAVQGKQGQEKRASDFSIELITNAGDGTLHTRGQECDGKNSKNYYFS IELSTPAATLLKEGQREPIINGSPLAALAGGSSLATTAGGSYASQTGPLQSKMDHPSS GKGEKNLNLKATIERDGTIAQEFLQASADKDGTLGQNSVHESSKNSLITLPAKATFAP HGNGHKLKQQSPGENSKNRVFKPPARSMTLEYGDGQLVAENGHGNKNESGDVAEENEA DCSDLSMTVNGSGSQHDTAGAWEKELTVAIEGQHESAHGTAGQKLKKPLTVTSVQAEE EEQLIVSSGSMYKTEGRAQLKTANLTAREHKMKKKAKPILATLAPIMNVDNAEGLTSH RKTTAACQKVENERHQLLDTQTMEVEGSSDNFSQSEPGICMFNKETESIPSNTVLHHT PQQEKGLVDHFDSPMQLQAEPESQKLDIHPCVLTRRKSDSSLGYSGNWNSMNASEPLM GKDGAATDESIPSIPSIQTYP" mobile_element complement(34371632..34376280) /note="source:CACAO_LINE_E_9_scaffold_1 2223 6862" /mobile_element_type="retrotransposon:LINE/L1" CONTIG join(KE132904.1:1..7866812,gap(10000),KE132905.1:1..3114749, gap(10000),KE132906.1:1..1958886,gap(10000),KE132907.1:1..3038825, gap(10000),KE132908.1:1..1404811,gap(10000),KE132909.1:1..3633588, gap(10000),KE132910.1:1..5794409,gap(10000),KE132911.1:1..392544, gap(10000),KE132912.1:1..4163526,gap(10000),KE132913.1:1..2939602) //