LOCUS CH878403 147852 bp DNA linear CON 24-MAR-2015 DEFINITION Homo sapiens 211000035807013 genomic scaffold, whole genome shotgun sequence. ACCESSION CH878403 AADB02000000 VERSION CH878403.1 DBLINK BioProject: PRJNA1431 BioSample: SAMN02981219 KEYWORDS WGS. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 147852) AUTHORS Venter,J.C., Adams,M.D., Myers,E.W., Li,P.W., Mural,R.J., Sutton,G.G., Smith,H.O., Yandell,M., Evans,C.A., Holt,R.A., Gocayne,J.D., Amanatides,P., Ballew,R.M., Huson,D.H., Wortman,J.R., Zhang,Q., Kodira,C.D., Zheng,X.H., Chen,L., Skupski,M., Subramanian,G., Thomas,P.D., Zhang,J., Gabor Miklos,G.L., Nelson,C., Broder,S., Clark,A.G., Nadeau,J., McKusick,V.A., Zinder,N., Levine,A.J., Roberts,R.J., Simon,M., Slayman,C., Hunkapiller,M., Bolanos,R., Delcher,A., Dew,I., Fasulo,D., Flanigan,M., Florea,L., Halpern,A., Hannenhalli,S., Kravitz,S., Levy,S., Mobarry,C., Reinert,K., Remington,K., Abu-Threideh,J., Beasley,E., Biddick,K., Bonazzi,V., Brandon,R., Cargill,M., Chandramouliswaran,I., Charlab,R., Chaturvedi,K., Deng,Z., Di Francesco,V., Dunn,P., Eilbeck,K., Evangelista,C., Gabrielian,A.E., Gan,W., Ge,W., Gong,F., Gu,Z., Guan,P., Heiman,T.J., Higgins,M.E., Ji,R.R., Ke,Z., Ketchum,K.A., Lai,Z., Lei,Y., Li,Z., Li,J., Liang,Y., Lin,X., Lu,F., Merkulov,G.V., Milshina,N., Moore,H.M., Naik,A.K., Narayan,V.A., Neelam,B., Nusskern,D., Rusch,D.B., Salzberg,S., Shao,W., Shue,B., Sun,J., Wang,Z., Wang,A., Wang,X., Wang,J., Wei,M., Wides,R., Xiao,C., Yan,C., Yao,A., Ye,J., Zhan,M., Zhang,W., Zhang,H., Zhao,Q., Zheng,L., Zhong,F., Zhong,W., Zhu,S., Zhao,S., Gilbert,D., Baumhueter,S., Spier,G., Carter,C., Cravchik,A., Woodage,T., Ali,F., An,H., Awe,A., Baldwin,D., Baden,H., Barnstead,M., Barrow,I., Beeson,K., Busam,D., Carver,A., Center,A., Cheng,M.L., Curry,L., Danaher,S., Davenport,L., Desilets,R., Dietz,S., Dodson,K., Doup,L., Ferriera,S., Garg,N., Gluecksmann,A., Hart,B., Haynes,J., Haynes,C., Heiner,C., Hladun,S., Hostin,D., Houck,J., Howland,T., Ibegwam,C., Johnson,J., Kalush,F., Kline,L., Koduru,S., Love,A., Mann,F., May,D., McCawley,S., McIntosh,T., McMullen,I., Moy,M., Moy,L., Murphy,B., Nelson,K., Pfannkoch,C., Pratts,E., Puri,V., Qureshi,H., Reardon,M., Rodriguez,R., Rogers,Y.H., Romblad,D., Ruhfel,B., Scott,R., Sitter,C., Smallwood,M., Stewart,E., Strong,R., Suh,E., Thomas,R., Tint,N.N., Tse,S., Vech,C., Wang,G., Wetter,J., Williams,S., Williams,M., Windsor,S., Winn-Deen,E., Wolfe,K., Zaveri,J., Zaveri,K., Abril,J.F., Guigo,R., Campbell,M.J., Sjolander,K.V., Karlak,B., Kejariwal,A., Mi,H., Lazareva,B., Hatton,T., Narechania,A., Diemer,K., Muruganujan,A., Guo,N., Sato,S., Bafna,V., Istrail,S., Lippert,R., Schwartz,R., Walenz,B., Yooseph,S., Allen,D., Basu,A., Baxendale,J., Blick,L., Caminha,M., Carnes-Stine,J., Caulk,P., Chiang,Y.H., Coyne,M., Dahlke,C., Mays,A., Dombroski,M., Donnelly,M., Ely,D., Esparham,S., Fosler,C., Gire,H., Glanowski,S., Glasser,K., Glodek,A., Gorokhov,M., Graham,K., Gropman,B., Harris,M., Heil,J., Henderson,S., Hoover,J., Jennings,D., Jordan,C., Jordan,J., Kasha,J., Kagan,L., Kraft,C., Levitsky,A., Lewis,M., Liu,X., Lopez,J., Ma,D., Majoros,W., McDaniel,J., Murphy,S., Newman,M., Nguyen,T., Nguyen,N., Nodell,M., Pan,S., Peck,J., Peterson,M., Rowe,W., Sanders,R., Scott,J., Simpson,M., Smith,T., Sprague,A., Stockwell,T., Turner,R., Venter,E., Wang,M., Wen,M., Wu,D., Wu,M., Xia,A., Zandieh,A. and Zhu,X. TITLE The sequence of the human genome JOURNAL Science 291 (5507), 1304-1351 (2001) PUBMED 11181995 REFERENCE 2 (bases 1 to 147852) AUTHORS Mural,R.J., Istrail,S., Sutton,G., Florea,L., Halpern,A.L., Mobarry,C.M., Lippert,R., Walenz,B., Shatkay,H., Dew,I., Miller,J.R., Flanigan,M.J., Edwards,N.J., Bolanos,R., Fasulo,D., Halldorsson,B.V., Hannenhalli,S., Turner,R., Yooseph,S., Lu,F., Nusskern,D.R., Shue,B.C., Zheng,X.H., Zhong,F., Delcher,A.L., Huson,D.H., Kravitz,S.A., Mouchard,L., Reinert,K., Remington,K.A., Clark,A.G., Waterman,M.S., Eichler,E.E., Adams,M.D., Hunkapiller,M.W., Myers,E.W. and Venter,J.C. TITLE Direct Submission JOURNAL Submitted (05-JUL-2005) Celera Genomics, 45 W. Gude Dr., Rockville, MD 20850, USA COMMENT This is the November 2001 combined whole genome shotgun assembly applied to the 27 million reads of Celera's whole genome shotgun data and 16 million reads of shredded GenBank data from other human genome projects (Nature 2001. 409:860-921). It relied on Celera's paired reads and BAC end reads from TIGR for long range order and orientation. Its scaffolds were mapped to chromosomes using STS maps. For more detailed information about whole genome sequencing and Celera's assembly process, please refer to Venter, J.C. et al. Science 2001. 291:1304-1351. This version of genes, transcripts, and proteins was created in April 2002 from the whole-genome mapping of transcript and protein sequences on the Celera human genome assembly (http://www.ncbi.nlm.nih.gov/genome/guide/human/release_notes.html) by Celera Chromosome Team, Content Systems and Informatics Research. The data sets used by this annotation process were collected in 2001 and include RefSeq (NM_) sequences, manually annotated transcripts from previous Celera assemblies, GenBank mRNA and dbEST sequences, Celera internal EST and full-insert sequences of cDNA clones (unpublished), mammalian SwissProt sequences, NRAA sequences, and International Protein Index (IPI) sequences (all human unless noted otherwise). The CDS of each transcript was computationally defined by either the longest ATG-to-Stop or the longest open reading frame. All CDSs corresponding to the longest open reading frames with no starting ATG were flagged as partial. In addition, some of the genes were manually curated between 2002 and 2005. Coverage analysis of splice junction donor/acceptor pairs and single-exon transcripts was done by Applied Biosystems in August 2006, based on Dec 2005 versions of human cDNA (RefSeq, Genbank mRNA and dbEST, Celera internal EST and full insert sequences) and human SwissProt sequences. FEATURES Location/Qualifiers source 1..147852 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" /chromosome="16" gene 14016..74276 /gene="DREV1" /locus_tag="hCG_21629" /note="gene_id=hCG21629.3" /db_xref="GeneID:51108" mRNA join(14016..14098,29430..29620,34651..34860,41735..41925, 72041..74276) /gene="DREV1" /locus_tag="hCG_21629" /product="DORA reverse strand protein 1, transcript variant hCT1963589" /note="gene_id=hCG21629.3 transcript_id=hCT1963589.1; splice donor-acceptor pairs covered / total pairs = 4/4; created on 26-AUG-2002" /db_xref="GeneID:51108" CDS join(14054..14098,29430..29620,34651..34860,41735..41925, 72041..72102) /gene="DREV1" /locus_tag="hCG_21629" /note="gene_id=hCG21629.3 transcript_id=hCT1963589.1 protein_id=hCP1777306.0 isoform=CRA_e" /codon_start=1 /product="DORA reverse strand protein 1, isoform CRA_e" /protein_id="EAW50521.1" /db_xref="GeneID:51108" /translation="MDRKTTSWDTKFYEKWYVCNREKLCESLQAVFVQSYLDQGTQIF LNNSIEKSGWLFIQLYHSFVSSVFSLFMSRTSINGLLGRGSMFVFSPDQFQRLLKINP DWKTHRLLDLGAGDGEVTKIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTG FQYDVISCLNLLDRCDQPLTLLKDIRSVLEPTRGRVILALVLPFHPYVENGKLGETIR NFGNQRTELGRTSE" mRNA join(16332..16696,29430..29620,34651..34860,41735..41919, 72030..74276) /gene="DREV1" /locus_tag="hCG_21629" /product="DORA reverse strand protein 1, transcript variant hCT2256823" /note="gene_id=hCG21629.3 transcript_id=hCT2256823.0; splice donor-acceptor pairs covered / total pairs = 4/4; created on 26-AUG-2002" /db_xref="GeneID:51108" mRNA join(16332..16696,29430..29620,34651..34860,41735..41919, 72033..74276) /gene="DREV1" /locus_tag="hCG_21629" /product="DORA reverse strand protein 1, transcript variant hCT12722" /note="gene_id=hCG21629.3 transcript_id=hCT12722.2; splice donor-acceptor pairs covered / total pairs = 4/4; created on 26-AUG-2002" /db_xref="GeneID:51108" mRNA join(16516..16626,29430..29620,41735..41919,72030..74276) /gene="DREV1" /locus_tag="hCG_21629" /product="DORA reverse strand protein 1, transcript variant hCT1963588" /note="gene_id=hCG21629.3 transcript_id=hCT1963588.1; splice donor-acceptor pairs covered / total pairs = 3/3; created on 26-AUG-2002" /db_xref="GeneID:51108" mRNA join(16525..16624,72209..73218) /gene="DREV1" /locus_tag="hCG_21629" /product="DORA reverse strand protein 1, transcript variant hCT1963590" /note="gene_id=hCG21629.3 transcript_id=hCT1963590.1; splice donor-acceptor pairs covered / total pairs = 0/1; created on 26-AUG-2002" /db_xref="GeneID:51108" CDS join(16532..16696,29430..29620,34651..34860,41735..41919, 72030..72235) /gene="DREV1" /locus_tag="hCG_21629" /note="gene_id=hCG21629.3 transcript_id=hCT2256823.0 protein_id=hCP1852760.0 isoform=CRA_b" /codon_start=1 /product="DORA reverse strand protein 1, isoform CRA_b" /protein_id="EAW50518.1" /db_xref="GeneID:51108" /translation="MRLLAGWLCLSLASVWLARRMWTLRSPLTRSLYVNMTSGPGGPA AAAGGRKENHQWYVCNREKLCESLQAVFVQSYLDQGTQIFLNNSIEKSGWLFIQLYHS FVSSVFSLFMSRTSINGLLGRGSMFVFSPDQFQRLLKINPDWKTHRLLDLGAGDGEVT KIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLDRCDQP LTLLKDIRSVLEPTRGRVILALVLPFHPYVENVGGKWEKPSEILEIKGQNWEEQVNSL PEVFRKAGFVIEAFTRLPYLCEGDMYNDYYVLDDAVFVLKPV" CDS join(16532..16696,29430..29620,34651..34860,41735..41919, 72033..72235) /gene="DREV1" /locus_tag="hCG_21629" /note="gene_id=hCG21629.3 transcript_id=hCT12722.2 protein_id=hCP39266.2 isoform=CRA_a" /codon_start=1 /product="DORA reverse strand protein 1, isoform CRA_a" /protein_id="EAW50517.1" /db_xref="GeneID:51108" /translation="MRLLAGWLCLSLASVWLARRMWTLRSPLTRSLYVNMTSGPGGPA AAAGGRKENHQWYVCNREKLCESLQAVFVQSYLDQGTQIFLNNSIEKSGWLFIQLYHS FVSSVFSLFMSRTSINGLLGRGSMFVFSPDQFQRLLKINPDWKTHRLLDLGAGDGEVT KIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLDRCDQP LTLLKDIRSVLEPTRGRVILALVLPFHPYVENGGKWEKPSEILEIKGQNWEEQVNSLP EVFRKAGFVIEAFTRLPYLCEGDMYNDYYVLDDAVFVLKPV" CDS join(16532..16624,72209..72235) /gene="DREV1" /locus_tag="hCG_21629" /note="gene_id=hCG21629.3 transcript_id=hCT1963590.1 protein_id=hCP1777303.0 isoform=CRA_d" /codon_start=1 /product="DORA reverse strand protein 1, isoform CRA_d" /protein_id="EAW50520.1" /db_xref="GeneID:51108" /translation="MRLLAGWLCLSLASVWLARRMWTLRSPLTRSAVFVLKPV" mRNA join(28883..29083,29430..29620,34651..34860,41735..41919, 72033..74276) /gene="DREV1" /locus_tag="hCG_21629" /product="DORA reverse strand protein 1, transcript variant hCT1963591" /note="gene_id=hCG21629.3 transcript_id=hCT1963591.1; splice donor-acceptor pairs covered / total pairs = 4/4; created on 26-AUG-2002" /db_xref="GeneID:51108" CDS join(29598..29620,34651..34860,41735..41919,72033..72235) /gene="DREV1" /locus_tag="hCG_21629" /note="gene_id=hCG21629.3 transcript_id=hCT1963591.1 protein_id=hCP1777304.0 isoform=CRA_c" /codon_start=1 /product="DORA reverse strand protein 1, isoform CRA_c" /protein_id="EAW50519.1" /db_xref="GeneID:51108" /translation="MSRTSINGLLGRGSMFVFSPDQFQRLLKINPDWKTHRLLDLGAG DGEVTKIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLD RCDQPLTLLKDIRSVLEPTRGRVILALVLPFHPYVENGGKWEKPSEILEIKGQNWEEQ VNSLPEVFRKAGFVIEAFTRLPYLCEGDMYNDYYVLDDAVFVLKPV" CDS join(29598..29620,41735..41919,72030..72235) /gene="DREV1" /locus_tag="hCG_21629" /note="gene_id=hCG21629.3 transcript_id=hCT1963588.1 protein_id=hCP1777305.0 isoform=CRA_f" /codon_start=1 /product="DORA reverse strand protein 1, isoform CRA_f" /protein_id="EAW50522.1" /db_xref="GeneID:51108" /translation="MSRTSINGVLGINEWQNTGFQYDVISCLNLLDRCDQPLTLLKDI RSVLEPTRGRVILALVLPFHPYVENVGGKWEKPSEILEIKGQNWEEQVNSLPEVFRKA GFVIEAFTRLPYLCEGDMYNDYYVLDDAVFVLKPV" gene complement(58087..69469) /gene="IGSF6" /locus_tag="hCG_21774" /note="gene_id=hCG21774.2" /db_xref="GeneID:10261" mRNA complement(join(58087..58396,59877..59957,60351..60401, 61093..61199,63936..64295,69335..69469)) /gene="IGSF6" /locus_tag="hCG_21774" /product="immunoglobulin superfamily, member 6" /note="gene_id=hCG21774.2 transcript_id=hCT12867.2; splice donor-acceptor pairs covered / total pairs = 5/5; created on 26-AUG-2002" /db_xref="GeneID:10261" CDS complement(join(58337..58396,59877..59957,60351..60401, 61093..61199,63936..64295,69335..69401)) /gene="IGSF6" /locus_tag="hCG_21774" /note="gene_id=hCG21774.2 transcript_id=hCT12867.2 protein_id=hCP39267.2" /codon_start=1 /product="immunoglobulin superfamily, member 6" /protein_id="EAW50523.1" /db_xref="GeneID:10261" /translation="MGTASRSNIARHLQTNLILFCVGAVGACTLSVTQPWYLEVDYTH EAVTIKCTFSATGCPSEQPTCLWFRYGAHQPENLCLDGCKSEADKFTVREALKENQVS LTVNRVTSNDSAIYICGIAFPSVPEARAKQTGGGTTLVVREIKLLSKELRSFLTALVS LLSVYVTGVCVAFILLSKSKSNPLRNKEIKEDSQKKKSARRIFQEIAQELYHKRHVET NQQSEKDNNTYENRRVLSNYERP" gene 95317..>147732 /gene="OTOA" /locus_tag="hCG_2043047" /note="gene_id=hCG2043047.0" /db_xref="GeneID:146183" mRNA join(95317..95408,95718..95746,95839..95869,95987..96014, 98541..98628,102021..102152,104204..104439,108375..108478, 114578..114678,117691..117872,121970..122093, 126689..126904,131782..131949,133704..133844, 135930..135988,136184..136301,139702..139775, 143320..143455,145038..145228,147634..>147732) /gene="OTOA" /locus_tag="hCG_2043047" /product="otoancorin, transcript variant hCT2349217" /note="gene_id=hCG2043047.0 transcript_id=hCT2349217.0; splice donor-acceptor pairs covered / total pairs = 19/19; created on 09-OCT-2003" /db_xref="GeneID:146183" CDS join(95318..95408,95718..95746,95839..95869,95987..96014, 98541..98628,102021..102152,104204..104439,108375..108478, 114578..114678,117691..117872,121970..122093, 126689..126904,131782..131949,133704..133844, 135930..135988,136184..136301,139702..139775, 143320..143455,145038..145228,147634..>147732) /gene="OTOA" /locus_tag="hCG_2043047" /note="gene_id=hCG2043047.0 transcript_id=hCT2349217.0 protein_id=hCP1914467.0 isoform=CRA_a" /codon_start=1 /product="otoancorin, isoform CRA_a" /protein_id="EAW50524.1" /db_xref="GeneID:146183" /translation="MSQEPTTYSLFLFLFLSHGVSSYTVPNSRQDLHPLLQNMAEEII DGSYLNALLDLIQFQSSHVWTDDLSHRVLAYLNSRNVAFTIPSLQAAVENHLEQRLHQ PQKLLEDLRKTDAQQFRTAMKCLLEDKKDGLDLKDIIIDLGEIRERALQSPGVNRSLF LITLERCFQMLNSLECVEILGKVLRGSSGSFLQPDITERLPRDLREDAFKNLSAVFKD LYDKTSAHSQRALYSWMTGILQTSSNATDDSASWVSAEHLWVLGRYMVHLSFEEITKI SPIEIGLFISYDNATKQLDMVYDITPELAQAFLERISSSNFNMRNTSTIHRQAHELWA LEPFPKMLGLLVCFYNDLELLDATVAQVLLYQMIKCSHLRGFQAGVQKLKAELLDIAM ENQTLNETLGSLSDAVVGLTYSQLESLSPEAVHGAISTLNQVSGWAKSQVIILSAKYL AHEKVLSFYNVSQMGALLAGVSTQAFCSMKRKDISQVLRSAVSQYVSDLSPAQQQGIL SKMVQAEDTAPGIVEIQGAFFKEVSLFDLRRQPGFNSTVLKDKELGRSQALFLYELLL KTTRRPEELLSAGQLVKGVTCSHIDAMSTDFFLAHFQDFQNNFALLSPYQVNCLAWKY WEVSRLSMPPFLLAALPARYLASVPASQCVPFLISLGKSWLDSLVLDSHKKTSVLRKV QQCLDDSIADEYTVDIMGNLLCHLPAAIIDRGISPRAWATALHGLRDCPDLNPEQKAA VRLKLLGQYGLPQHWTAETTKDLGPFLVLFSGDELSSIATKV" mRNA join(121764..121838,121970..122093,126689..126904, 131782..131949,133704..133844,135930..135988, 136184..136301,139702..139775,143320..143455, 145038..145228,147634..>147732) /gene="OTOA" /locus_tag="hCG_2043047" /product="otoancorin, transcript variant hCT2349323" /note="gene_id=hCG2043047.0 transcript_id=hCT2349323.0; splice donor-acceptor pairs covered / total pairs = 10/10; created on 09-OCT-2003" /db_xref="GeneID:146183" CDS join(121831..121838,121970..122093,126689..126904, 131782..131949,133704..133844,135930..135988, 136184..136301,139702..139775,143320..143455, 145038..145228,147634..>147732) /gene="OTOA" /locus_tag="hCG_2043047" /note="gene_id=hCG2043047.0 transcript_id=hCT2349323.0 protein_id=hCP1914573.0 isoform=CRA_b" /codon_start=1 /product="otoancorin, isoform CRA_b" /protein_id="EAW50525.1" /db_xref="GeneID:146183" /translation="MFRLGLLVCFYNDLELLDATVAQVLLYQMIKCSHLRGFQAGVQK LKAELLDIAMENQTLNETLGSLSDAVVGLTYSQLESLSPEAVHGAISTLNQVSGWAKS QVIILSAKYLAHEKVLSFYNVSQMGALLAGVSTQAFCSMKRKDISQVLRSAVSQYVSD LSPAQQQGILSKMVQAEDTAPGIVEIQGAFFKEVSLFDLRRQPGFNSTVLKDKELGRS QALFLYELLLKTTRRPEELLSAGQLVKGVTCSHIDAMSTDFFLAHFQDFQNNFALLSP YQVNCLAWKYWEVSRLSMPPFLLAALPARYLASVPASQCVPFLISLGKSWLDSLVLDS HKKTSVLRKVQQCLDDSIADEYTVDIMGNLLCHLPAAIIDRGISPRAWATALHGLRDC PDLNPEQKAAVRLKLLGQYGLPQHWTAETTKDLGPFLVLFSGDELSSIATKV" CONTIG join(AADB02017253.1:1..147852) //