LOCUS       CH478278              293033 bp    DNA     linear   CON 23-MAR-2015
DEFINITION  Aedes aegypti strain Liverpool supercont1.1095 genomic scaffold,
            whole genome shotgun sequence.
ACCESSION   CH478278
VERSION     CH478278.1
DBLINK      BioProject: PRJNA12434
            BioSample: SAMN02953616
KEYWORDS    WGS.
SOURCE      Aedes aegypti (yellow fever mosquito)
  ORGANISM  Aedes aegypti
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Nematocera;
            Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia.
REFERENCE   1  (bases 1 to 293033)
  AUTHORS   Nene,V., Wortman,J.R., Lawson,D., Haas,B., Kodira,C., Tu,Z.J.,
            Loftus,B., Xi,Z., Megy,K., Grabherr,M., Ren,Q., Zdobnov,E.M.,
            Lobo,N.F., Campbell,K.S., Brown,S.E., Bonaldo,M.F., Zhu,J.,
            Sinkins,S.P., Hogenkamp,D.G., Amedeo,P., Arensburger,P.,
            Atkinson,P.W., Bidwell,S., Biedler,J., Birney,E., Bruggner,R.V.,
            Costas,J., Coy,M.R., Crabtree,J., Crawford,M., Debruyn,B.,
            Decaprio,D., Eiglmeier,K., Eisenstadt,E., El-Dorry,H.,
            Gelbart,W.M., Gomes,S.L., Hammond,M., Hannick,L.I., Hogan,J.R.,
            Holmes,M.H., Jaffe,D., Johnston,J.S., Kennedy,R.C., Koo,H.,
            Kravitz,S., Kriventseva,E.V., Kulp,D., Labutti,K., Lee,E., Li,S.,
            Lovin,D.D., Mao,C., Mauceli,E., Menck,C.F., Miller,J.R.,
            Montgomery,P., Mori,A., Nascimento,A.L., Naveira,H.F., Nusbaum,C.,
            O'leary,S., Orvis,J., Pertea,M., Quesneville,H., Reidenbach,K.R.,
            Rogers,Y.H., Roth,C.W., Schneider,J.R., Schatz,M., Shumway,M.,
            Stanke,M., Stinson,E.O., Tubio,J.M., Vanzee,J.P.,
            Verjovski-Almeida,S., Werner,D., White,O., Wyder,S., Zeng,Q.,
            Zhao,Q., Zhao,Y., Hill,C.A., Raikhel,A.S., Soares,M.B.,
            Knudson,D.L., Lee,N.H., Galagan,J., Salzberg,S.L., Paulsen,I.T.,
            Dimopoulos,G., Collins,F.H., Birren,B., Fraser-Liggett,C.M. and
            Severson,D.W.
  TITLE     Genome sequence of Aedes aegypti, a major arbovirus vector
  JOURNAL   Science 316 (5832), 1718-1723 (2007)
   PUBMED   17510324
REFERENCE   2  (bases 1 to 293033)
  AUTHORS   Galagan,J., Devon,K., Henn,M.R., Severson,D.W., Collins,F.,
            Jaffe,D., Rounsley,S., DeCaprio,D., Kodira,C., Lander,E.,
            Crawford,M., Butler,J., Alvarez,P., Gnerre,S., Grabherr,M.,
            Kleber,M., Mauceli,E., Brockman,W., Young,S., LaButti,K.,
            Pushparaj,V., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M.,
            Howarth,C., Zeng,Q., Yandava,C., Oleary,S., Alvarado,L., Nusbaum,C.
            and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2005) Broad Institute of MIT and Harvard, 320
            Charles Street, Cambridge, MA 02141, USA
REFERENCE   3  (bases 1 to 293033)
  AUTHORS   Loftus,B.J., Nene,V.M., Hannick,L.I., Bidwell,S., Haas,B.,
            Amedeo,P., Orvis,J., Wortman,J.R., White,O.R., Salzberg,S.,
            Shumway,M., Koo,H., Zhao,Y., Holmes,M., Miller,J., Schatz,M.,
            Pop,M., Pai,G., Utterback,T., Rogers,Y.-H., Kravitz,S. and
            Fraser,C.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2005) The Institute for Genomic Research, 9712
            Medical Center Drive, Rockville, MD 20850, USA
REFERENCE   4  (bases 1 to 293033)
  CONSRTM   VectorBase
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2012) VectorBase / Ensembl, European
            Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton,
            Cambridge CB10 1SD, UK
  REMARK    Annotation update by submitter
COMMENT     The sequence for this assembly was produced jointly by The Broad
            Institute of Harvard/MIT and The Institute for Genomic Research.
            The assembly represents 7.6X sequence coverage of the genome and
            the total length of the contigs is 1.31 Gb. Additional information
            about the Aedes aegypti sequencing project and assembly can be
            found at
            http://www.broad.mit.edu/annotation/disease_vector/aedes_aegypti/
            and http://www.tigr.org/msc/aedes/aedes.shtml. Long-term curation
            of the sequence and subsequent annotation updates will be the
            responsibility of VectorBase at http://www.vectorbase.org.
            Annotation was updated by VectorBase in Sept 2012.
FEATURES             Location/Qualifiers
     source          1..293033
                     /organism="Aedes aegypti"
                     /mol_type="genomic DNA"
                     /strain="Liverpool"
                     /db_xref="taxon:7159"
     gene            <14732..>15016
                     /locus_tag="AaeL_AAEL014383"
                     /db_xref="VectorBase:AAEL014383"
     mRNA            <14732..>15016
                     /locus_tag="AaeL_AAEL014383"
                     /product="AAEL014383-RA"
                     /note="AAEL014383-RA coding for AAEL014383-PA"
                     /db_xref="VectorBase:AAEL014383-RA"
                     /db_xref="VectorBase:AAEL014383"
     CDS             <14732..15016
                     /locus_tag="AaeL_AAEL014383"
                     /note="AAEL014383-PA encoded by AAEL014383-RA"
                     /codon_start=1
                     /product="AAEL014383-PA"
                     /protein_id="EAT33328.1"
                     /db_xref="VectorBase:AAEL014383-PA"
                     /db_xref="VectorBase:AAEL014383"
                     /translation="ISVSPHSSNVCNSKPQCLELSQLIQTHIPDAQVACKIGRRGSFE
                     VQINDTLVHSKINSLAFPDYEAVVSNVIAARDGRPVTKVKEQPITECVVQ"
     gene            complement(<15079..>17577)
                     /gene="MOCO1_AEDAE"
                     /locus_tag="AaeL_AAEL014381"
                     /db_xref="VectorBase:AAEL014381"
     mRNA            complement(join(<15079..16681,16737..17346,17496..>17577))
                     /gene="MOCO1_AEDAE"
                     /locus_tag="AaeL_AAEL014381"
                     /product="AAEL014381-RA"
                     /note="AAEL014381-RA coding for AAEL014381-PA;
                     MOCO1_AEDAE"
                     /db_xref="VectorBase:AAEL014381-RA"
                     /db_xref="VectorBase:AAEL014381"
     CDS             complement(join(15079..16681,16737..17346,17496..17577))
                     /gene="MOCO1_AEDAE"
                     /locus_tag="AaeL_AAEL014381"
                     /note="AAEL014381-PA encoded by AAEL014381-RA"
                     /codon_start=1
                     /product="AAEL014381-PA"
                     /protein_id="EAT33329.1"
                     /db_xref="VectorBase:AAEL014381-PA"
                     /db_xref="VectorBase:AAEL014381"
                     /translation="MEAMMNFTSQYTVEEALAIENEFSRLKEKCYLDHAGTTLYADSQ
                     IRSVCEGLAQNLYCNPHTSRTTEDLLDQVRYRVLRHFNTRSSEYSLIFTSGTTASLKL
                     LAESFEFAPEGAFVYLKDSHTSVLGMREIVGTERIYPVEREQLLKELDSSERSDNEHS
                     SLIVFPAQCNFNGVKYPLELVRKIQRDGISGYGKERFRVCLDAASFVSTSFLDLSKYQ
                     PDFVCLSFYKIFGYPTGLGALLVHHTAADQLRKKYYGGGTVKIAMAGRIFHVKRDPLV
                     ERFEDGTLAFTSIIALLQGFETLERLVPSTAGLRTIERISQQTFHIGRYCYNRLKALR
                     HSNENAVVKLYHDTGFEDRGLQGGIVNFNILHEDGTYVGFAEVSYMASLHNILLRTGC
                     FCNPGACQRHLQLSDEDVLKQFDAGHVCGDANDLIDGQPTGSVRVSFGYMTRKEDIDC
                     LLEMIEKCYIRKTIANGFTRTQIVSKYKSHDQPRLKMICLFPIKSCGAFKVTTRWPLS
                     RRGLKHDREFVIVDENGVALTQKKLAEMCLIRPQINVKTNEMTLSHPGMADFVLQLDL
                     LGESQRIKLCQTKVCQDNVQAIDCGDQVAEWISVALQTSGLRLLKQSDEEVRTFQQSK
                     QEIALANQAQFLLINQASVRWLADKVPDWDELHEEPTLESLVDRFRGNLIVETPKSME
                     ECDWKRVTIGYLEFAVDGPCSRCQMICIDQGTGVKATEPLRTIGREFKGKMRFGIYLS
                     HVNPLRDGSEQWLYCNSVVEGLSE"
     gap             18813..21607
                     /estimated_length=2795
     gap             23641..26492
                     /estimated_length=2852
     gap             31053..34005
                     /estimated_length=2953
     gene            complement(45127..46555)
                     /locus_tag="AaeL_AAEL014388"
                     /db_xref="VectorBase:AAEL014388"
     mRNA            complement(join(45127..45592,45718..46555))
                     /locus_tag="AaeL_AAEL014388"
                     /product="AAEL014388-RA"
                     /note="AAEL014388-RA coding for AAEL014388-PA"
                     /db_xref="VectorBase:AAEL014388-RA"
                     /db_xref="VectorBase:AAEL014388"
     CDS             complement(join(45182..45592,45718..46422))
                     /locus_tag="AaeL_AAEL014388"
                     /note="AAEL014388-PA encoded by AAEL014388-RA"
                     /codon_start=1
                     /product="AAEL014388-PA"
                     /protein_id="EAT33330.1"
                     /db_xref="VectorBase:AAEL014388-PA"
                     /db_xref="VectorBase:AAEL014388"
                     /translation="MVPESTKVNSTFISEKVSRIRWIPEQYDESNSFLTGSWDLDVNN
                     LKVWKLLRNDYADDENEFVPKCTAEVCFTGDISGMEFVDERTVILSSTEGFASLISLD
                     REKDEDNLQERHRFDSLHKFDTFSSLNAAPCTGLSVHDTDVATVGEDGRLNVVSTVGL
                     KVLRSIASADSCTISCVAFLNPKEVLTGNRLGIIKCFDIRAEGQKAVGSFAVSCEDEK
                     RSNCVTCITYHPTQRHIILAGSEEGSITVWDLRQPQFPASYLKAHDHAISELAFHRTQ
                     PSRLFSASEGGELWQWNQNTLPTGPSATTGALLGTTTIESDTNNPWLNGERAKSKISV
                     TSLLSGIRKAVNSFDSCRSKVICGGDNEAIYLLENVN"
     gap             51921..52838
                     /estimated_length=918
     gene            56748..58912
                     /locus_tag="AaeL_AAEL014389"
                     /db_xref="VectorBase:AAEL014389"
     mRNA            join(56748..56878,56953..57065,57129..57997,58239..58725,
                     58788..58912)
                     /locus_tag="AaeL_AAEL014389"
                     /product="AAEL014389-RA"
                     /note="AAEL014389-RA coding for AAEL014389-PA"
                     /db_xref="VectorBase:AAEL014389-RA"
                     /db_xref="VectorBase:AAEL014389"
     CDS             join(56811..56878,56953..57065,57129..57997,58239..58725,
                     58788..58864)
                     /locus_tag="AaeL_AAEL014389"
                     /note="AAEL014389-PA encoded by AAEL014389-RA"
                     /codon_start=1
                     /product="AAEL014389-PA"
                     /protein_id="EAT33331.1"
                     /db_xref="VectorBase:AAEL014389-PA"
                     /db_xref="VectorBase:AAEL014389"
                     /translation="MESWLKDRLSKCLCFEVPDEMIGYIMTIRGNQELDEYFKSLLDS
                     GNPEHVSFLNEFKQRLRKSPSEGRGGKNQKSGKQQQNKSQPPQQQLQPQQSRGPKLPE
                     PVAKQDVLPVASSQIHQGAVKKKTKYVSLYDQEGRANVVLIKGRHLCDCQASKHKLIN
                     NCLHCGRIVCEQEGSGPCLFCGSLVCTDEEQKMIDSSSKKGDNLKRSLMDQNRPKGWE
                     EAVATRNRLLEYDRNSEKRTTVIDDESDYFRANSVWLSDAERKKMEKLEAEMREKKHA
                     SRMSRKVTIDFAGRQVVEEPQLAIEVEDEILKQIAESVAPEKENAGPKGGWDRKKASA
                     DRSDDIHPGIVGEAPIFIDLSSGQAPLRPQNGPRFDGVYSKVQDKEFLEMSDLRHCLS
                     MHQPWASLLVAGIKRHEGRTWYSSHRGRLWIAATAKPVDMEMVKQMENFYRVLYNDDS
                     IEFPSQYPSGCLLGCVSVQDVLPQEEYRKQYPEGESESPFVFVCTDPQELPIRFPVKG
                     EHKIYNLDTKIHQAAVKALQRLSKLKAEE"
     gap             70263..70362
                     /estimated_length=unknown
     gap             82791..83174
                     /estimated_length=384
     gap             91232..106290
                     /estimated_length=15059
     gap             110497..110609
                     /estimated_length=113
     gap             121295..122140
                     /estimated_length=846
     gap             125378..126926
                     /estimated_length=1549
     gap             132741..135073
                     /estimated_length=2333
     gap             142272..142635
                     /estimated_length=364
     gap             156048..165182
                     /estimated_length=9135
     gene            <175744..>176052
                     /locus_tag="AaeL_AAEL014384"
                     /db_xref="VectorBase:AAEL014384"
     mRNA            <175744..>176052
                     /locus_tag="AaeL_AAEL014384"
                     /product="AAEL014384-RA"
                     /note="AAEL014384-RA coding for AAEL014384-PA"
                     /db_xref="VectorBase:AAEL014384-RA"
                     /db_xref="VectorBase:AAEL014384"
     CDS             175744..176052
                     /locus_tag="AaeL_AAEL014384"
                     /note="AAEL014384-PA encoded by AAEL014384-RA"
                     /codon_start=1
                     /product="AAEL014384-PA"
                     /protein_id="EAT33332.1"
                     /db_xref="VectorBase:AAEL014384-PA"
                     /db_xref="VectorBase:AAEL014384"
                     /translation="MDKYQFLATDESVEDSKKLADLLAKNKVQQPVWLSGTDLGQPGS
                     WIWLSVMLPVGGVSSYVRWKDNAPNPSSCMTAELDDNNIKWSTKPCSQTACYVCQSFG
                     "
     gap             201151..201410
                     /estimated_length=260
     gene            <203614..>204262
                     /gene="CTLMA14"
                     /locus_tag="AaeL_AAEL014382"
                     /db_xref="VectorBase:AAEL014382"
     mRNA            join(<203614..203707,203770..203849,203912..>204262)
                     /gene="CTLMA14"
                     /locus_tag="AaeL_AAEL014382"
                     /product="AAEL014382-RA"
                     /note="AAEL014382-RA coding for AAEL014382-PA"
                     /db_xref="VectorBase:AAEL014382-RA"
                     /db_xref="VectorBase:AAEL014382"
     CDS             join(203614..203707,203770..203849,203912..204262)
                     /gene="CTLMA14"
                     /locus_tag="AaeL_AAEL014382"
                     /note="AAEL014382-PA encoded by AAEL014382-RA"
                     /codon_start=1
                     /product="AAEL014382-PA"
                     /protein_id="EAT33333.1"
                     /db_xref="VectorBase:AAEL014382-PA"
                     /db_xref="VectorBase:AAEL014382"
                     /translation="MMEFLSSLLVLCLIGTLKLTAADPLRNQTVRDILVKNMCLCRCE
                     AVNDGSKNYLIPFDDGTWFEAISYCNGMGMTLAQIRDRYDNQDLEEWLRDNGDEPSER
                     YWIGGNDLAKPGIFRWGLTNKEITYKKWASGEPNAAVMRGETEHCVELRADTMQWNDS
                     VCTKRLKFVCERLN"
     gene            complement(203918..204905)
                     /locus_tag="AaeL_AAEL014390"
                     /db_xref="VectorBase:AAEL014390"
     mRNA            complement(join(203918..204745,204808..204905))
                     /locus_tag="AaeL_AAEL014390"
                     /product="AAEL014390-RA"
                     /note="AAEL014390-RA coding for AAEL014390-PA"
                     /db_xref="VectorBase:AAEL014390-RA"
                     /db_xref="VectorBase:AAEL014390"
     CDS             complement(join(204306..204745,204808..204892))
                     /locus_tag="AaeL_AAEL014390"
                     /note="AAEL014390-PA encoded by AAEL014390-RA"
                     /codon_start=1
                     /product="AAEL014390-PA"
                     /protein_id="EAT33334.1"
                     /db_xref="VectorBase:AAEL014390-PA"
                     /db_xref="VectorBase:AAEL014390"
                     /translation="MKIIISLLCVICFMLVTNLCSPIVDEDDSSSFGSPCLQPPMKFK
                     KRYFVHNYNHLTFLEAWRQCHAIGHRLATITSEEDSQLLQETIVNSTNTKGPWYIGGT
                     DLGNEGHFIWISTNTPVGHKTGYFNFSPGQPDNAGANEHCLEIGRWGGVEWNDVHCHA
                     KSRYICESVSPIWS"
     gap             211140..211672
                     /estimated_length=533
     gap             216684..218119
                     /estimated_length=1436
     gene            complement(<221678..>222031)
                     /gene="CTLGA9_a"
                     /locus_tag="AaeL_AAEL014385"
                     /db_xref="VectorBase:AAEL014385"
     mRNA            complement(<221678..>222031)
                     /gene="CTLGA9_a"
                     /locus_tag="AaeL_AAEL014385"
                     /product="AAEL014385-RA"
                     /note="AAEL014385-RA coding for AAEL014385-PA"
                     /db_xref="VectorBase:AAEL014385-RA"
                     /db_xref="VectorBase:AAEL014385"
     CDS             complement(221678..222031)
                     /gene="CTLGA9_a"
                     /locus_tag="AaeL_AAEL014385"
                     /note="AAEL014385-PA encoded by AAEL014385-RA"
                     /codon_start=1
                     /product="AAEL014385-PA"
                     /protein_id="EAT33335.1"
                     /db_xref="VectorBase:AAEL014385-PA"
                     /db_xref="VectorBase:AAEL014385"
                     /translation="MEAWRLCQAIGQRLATITSEEDSRLVEEAIAKSTNTNGPWYIGG
                     TDWGNEGHFVWISTNTPVGHETGYINFSSGQPDNYRENEHCLEVGRWGGVKWNDVHCH
                     ARSRYICETVSPHWS"
     gene            complement(<224461..>225327)
                     /locus_tag="AaeL_AAEL014387"
                     /db_xref="VectorBase:AAEL014387"
     mRNA            complement(<224461..>225327)
                     /locus_tag="AaeL_AAEL014387"
                     /product="AAEL014387-RA"
                     /note="AAEL014387-RA coding for AAEL014387-PA"
                     /db_xref="VectorBase:AAEL014387-RA"
                     /db_xref="VectorBase:AAEL014387"
     CDS             complement(224461..225327)
                     /locus_tag="AaeL_AAEL014387"
                     /note="AAEL014387-PA encoded by AAEL014387-RA"
                     /codon_start=1
                     /product="AAEL014387-PA"
                     /protein_id="EAT33336.1"
                     /db_xref="VectorBase:AAEL014387-PA"
                     /db_xref="VectorBase:AAEL014387"
                     /translation="MNASLAFCTALIGLLILNDANIWCFQCGIRQYKTRSLITNAYNV
                     QPGDYPWHTAIYQVVPIRQYICGGTLVGQSVIITSAHCVTVQGQSEARDIDELVIKVG
                     KHLLNVKSEFELERELSSIIVHSEFSSDKHDNDIALMITKEPLEYGKFVQPACLPTFS
                     LTRDNAVGNIVGWGFTNKKSISNVLKAANAPIVSRALCVKSNPSVFSSTLTNEMFCAG
                     YRNGTNACNGDSGGGFFRFVEGNWYLVGITSFTAAKQQNENLCSSTDYTAFIDVVKYK
                     RWIEENSGKCNW"
     gap             228489..246712
                     /estimated_length=18224
     gap             250106..250205
                     /estimated_length=unknown
     gap             271205..271411
                     /estimated_length=207
     gene            286897..288087
                     /locus_tag="AaeL_AAEL014386"
                     /db_xref="VectorBase:AAEL014386"
     mRNA            join(286897..287010,287055..287271,287331..288087)
                     /locus_tag="AaeL_AAEL014386"
                     /product="AAEL014386-RA"
                     /note="AAEL014386-RA coding for AAEL014386-PA"
                     /db_xref="VectorBase:AAEL014386-RA"
                     /db_xref="VectorBase:AAEL014386"
     CDS             join(287144..287271,287331..287946)
                     /locus_tag="AaeL_AAEL014386"
                     /note="AAEL014386-PA encoded by AAEL014386-RA"
                     /codon_start=1
                     /product="AAEL014386-PA"
                     /protein_id="EAT33337.1"
                     /db_xref="VectorBase:AAEL014386-PA"
                     /db_xref="VectorBase:AAEL014386"
                     /translation="MAVLIAQPRKNGSIVAICGGSLVSDRFILTAAHCFNILPDHNML
                     KVRLGGWNITTDRSCDDRICSGRIVDYAIERVFVHQDFNSTNIHYDIALIKLAKSVAF
                     TDFVSPICIAESISCKIPQDAEKIFRAVGWNIVEEEYVANLTDFIGDRHQFSIEMYSV
                     YGNSCDYVFWPTLEICTKRVNKTNDQFVDFGRSLISKENDGYWFLYGYGVWEFGNPDA
                     MPYESDIFTRIACHRDWIKSILKNFTTCS"
CONTIG      join(AAGE02028718.1:1..18812,gap(2795),AAGE02028719.1:1..2033,
            gap(2852),AAGE02028720.1:1..4560,gap(2953),AAGE02028721.1:1..17915,
            gap(918),AAGE02028722.1:1..17424,gap(unk100),
            AAGE02028723.1:1..12428,gap(384),AAGE02028724.1:1..8057,gap(15059),
            AAGE02028725.1:1..4206,gap(113),AAGE02028726.1:1..10685,gap(846),
            AAGE02028727.1:1..3237,gap(1549),AAGE02028728.1:1..5814,gap(2333),
            AAGE02028729.1:1..7198,gap(364),AAGE02028730.1:1..13412,gap(9135),
            AAGE02028731.1:1..35968,gap(260),AAGE02028732.1:1..9729,gap(533),
            AAGE02028733.1:1..5011,gap(1436),AAGE02028734.1:1..10369,
            gap(18224),AAGE02028735.1:1..3393,gap(unk100),
            AAGE02028736.1:1..20999,gap(207),AAGE02028737.1:1..21622)
//