LOCUS CH471155 4481570 bp DNA linear CON 23-MAR-2015 DEFINITION Homo sapiens 211000035838758 genomic scaffold, whole genome shotgun sequence. ACCESSION CH471155 AADB02000000 VERSION CH471155.1 DBLINK BioProject: PRJNA1431 BioSample: SAMN02981219 KEYWORDS WGS. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4481570) AUTHORS Venter,J.C., Adams,M.D., Myers,E.W., Li,P.W., Mural,R.J., Sutton,G.G., Smith,H.O., Yandell,M., Evans,C.A., Holt,R.A., Gocayne,J.D., Amanatides,P., Ballew,R.M., Huson,D.H., Wortman,J.R., Zhang,Q., Kodira,C.D., Zheng,X.H., Chen,L., Skupski,M., Subramanian,G., Thomas,P.D., Zhang,J., Gabor Miklos,G.L., Nelson,C., Broder,S., Clark,A.G., Nadeau,J., McKusick,V.A., Zinder,N., Levine,A.J., Roberts,R.J., Simon,M., Slayman,C., Hunkapiller,M., Bolanos,R., Delcher,A., Dew,I., Fasulo,D., Flanigan,M., Florea,L., Halpern,A., Hannenhalli,S., Kravitz,S., Levy,S., Mobarry,C., Reinert,K., Remington,K., Abu-Threideh,J., Beasley,E., Biddick,K., Bonazzi,V., Brandon,R., Cargill,M., Chandramouliswaran,I., Charlab,R., Chaturvedi,K., Deng,Z., Di Francesco,V., Dunn,P., Eilbeck,K., Evangelista,C., Gabrielian,A.E., Gan,W., Ge,W., Gong,F., Gu,Z., Guan,P., Heiman,T.J., Higgins,M.E., Ji,R.R., Ke,Z., Ketchum,K.A., Lai,Z., Lei,Y., Li,Z., Li,J., Liang,Y., Lin,X., Lu,F., Merkulov,G.V., Milshina,N., Moore,H.M., Naik,A.K., Narayan,V.A., Neelam,B., Nusskern,D., Rusch,D.B., Salzberg,S., Shao,W., Shue,B., Sun,J., Wang,Z., Wang,A., Wang,X., Wang,J., Wei,M., Wides,R., Xiao,C., Yan,C., Yao,A., Ye,J., Zhan,M., Zhang,W., Zhang,H., Zhao,Q., Zheng,L., Zhong,F., Zhong,W., Zhu,S., Zhao,S., Gilbert,D., Baumhueter,S., Spier,G., Carter,C., Cravchik,A., Woodage,T., Ali,F., An,H., Awe,A., Baldwin,D., Baden,H., Barnstead,M., Barrow,I., Beeson,K., Busam,D., Carver,A., Center,A., Cheng,M.L., Curry,L., Danaher,S., Davenport,L., Desilets,R., Dietz,S., Dodson,K., Doup,L., Ferriera,S., Garg,N., Gluecksmann,A., Hart,B., Haynes,J., Haynes,C., Heiner,C., Hladun,S., Hostin,D., Houck,J., Howland,T., Ibegwam,C., Johnson,J., Kalush,F., Kline,L., Koduru,S., Love,A., Mann,F., May,D., McCawley,S., McIntosh,T., McMullen,I., Moy,M., Moy,L., Murphy,B., Nelson,K., Pfannkoch,C., Pratts,E., Puri,V., Qureshi,H., Reardon,M., Rodriguez,R., Rogers,Y.H., Romblad,D., Ruhfel,B., Scott,R., Sitter,C., Smallwood,M., Stewart,E., Strong,R., Suh,E., Thomas,R., Tint,N.N., Tse,S., Vech,C., Wang,G., Wetter,J., Williams,S., Williams,M., Windsor,S., Winn-Deen,E., Wolfe,K., Zaveri,J., Zaveri,K., Abril,J.F., Guigo,R., Campbell,M.J., Sjolander,K.V., Karlak,B., Kejariwal,A., Mi,H., Lazareva,B., Hatton,T., Narechania,A., Diemer,K., Muruganujan,A., Guo,N., Sato,S., Bafna,V., Istrail,S., Lippert,R., Schwartz,R., Walenz,B., Yooseph,S., Allen,D., Basu,A., Baxendale,J., Blick,L., Caminha,M., Carnes-Stine,J., Caulk,P., Chiang,Y.H., Coyne,M., Dahlke,C., Mays,A., Dombroski,M., Donnelly,M., Ely,D., Esparham,S., Fosler,C., Gire,H., Glanowski,S., Glasser,K., Glodek,A., Gorokhov,M., Graham,K., Gropman,B., Harris,M., Heil,J., Henderson,S., Hoover,J., Jennings,D., Jordan,C., Jordan,J., Kasha,J., Kagan,L., Kraft,C., Levitsky,A., Lewis,M., Liu,X., Lopez,J., Ma,D., Majoros,W., McDaniel,J., Murphy,S., Newman,M., Nguyen,T., Nguyen,N., Nodell,M., Pan,S., Peck,J., Peterson,M., Rowe,W., Sanders,R., Scott,J., Simpson,M., Smith,T., Sprague,A., Stockwell,T., Turner,R., Venter,E., Wang,M., Wen,M., Wu,D., Wu,M., Xia,A., Zandieh,A. and Zhu,X. TITLE The sequence of the human genome JOURNAL Science 291 (5507), 1304-1351 (2001) PUBMED 11181995 REFERENCE 2 (bases 1 to 4481570) AUTHORS Mural,R.J., Istrail,S., Sutton,G., Florea,L., Halpern,A.L., Mobarry,C.M., Lippert,R., Walenz,B., Shatkay,H., Dew,I., Miller,J.R., Flanigan,M.J., Edwards,N.J., Bolanos,R., Fasulo,D., Halldorsson,B.V., Hannenhalli,S., Turner,R., Yooseph,S., Lu,F., Nusskern,D.R., Shue,B.C., Zheng,X.H., Zhong,F., Delcher,A.L., Huson,D.H., Kravitz,S.A., Mouchard,L., Reinert,K., Remington,K.A., Clark,A.G., Waterman,M.S., Eichler,E.E., Adams,M.D., Hunkapiller,M.W., Myers,E.W. and Venter,J.C. TITLE Direct Submission JOURNAL Submitted (05-JUL-2005) Celera Genomics, 45 W. Gude Dr., Rockville, MD 20850, USA COMMENT This is the November 2001 combined whole genome shotgun assembly applied to the 27 million reads of Celera's whole genome shotgun data and 16 million reads of shredded GenBank data from other human genome projects (Nature 2001. 409:860-921). It relied on Celera's paired reads and BAC end reads from TIGR for long range order and orientation. Its scaffolds were mapped to chromosomes using STS maps. For more detailed information about whole genome sequencing and Celera's assembly process, please refer to Venter, J.C. et al. Science 2001. 291:1304-1351. This version of genes, transcripts, and proteins was created in April 2002 from the whole-genome mapping of transcript and protein sequences on the Celera human genome assembly (http://www.ncbi.nlm.nih.gov/genome/guide/human/release_notes.html) by Celera Chromosome Team, Content Systems and Informatics Research. The data sets used by this annotation process were collected in 2001 and include RefSeq (NM_) sequences, manually annotated transcripts from previous Celera assemblies, GenBank mRNA and dbEST sequences, Celera internal EST and full-insert sequences of cDNA clones (unpublished), mammalian SwissProt sequences, NRAA sequences, and International Protein Index (IPI) sequences (all human unless noted otherwise). The CDS of each transcript was computationally defined by either the longest ATG-to-Stop or the longest open reading frame. All CDSs corresponding to the longest open reading frames with no starting ATG were flagged as partial. In addition, some of the genes were manually curated between 2002 and 2005. Coverage analysis of splice junction donor/acceptor pairs and single-exon transcripts was done by Applied Biosystems in August 2006, based on Dec 2005 versions of human cDNA (RefSeq, Genbank mRNA and dbEST, Celera internal EST and full insert sequences) and human SwissProt sequences. FEATURES Location/Qualifiers source 1..4481570 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" /chromosome="X" gene complement(79579..81151) /locus_tag="hCG_1741694" /note="gene_id=hCG1741694.2" mRNA complement(79579..81151) /locus_tag="hCG_1741694" /product="hCG1741694, transcript variant hCT1779841" /note="gene_id=hCG1741694.2 transcript_id=hCT1779841.1; overlap evidence=no; created on 26-AUG-2002" mRNA complement(join(<80058..80237,80474..80651,80669..>81066)) /locus_tag="hCG_1741694" /product="hCG1741694, transcript variant hCT2265228" /note="gene_id=hCG1741694.2 transcript_id=hCT2265228.0; splice donor-acceptor pairs covered / total pairs = 0/2; created on 26-AUG-2002" CDS complement(join(<80058..80237,80474..80651,80669..81066)) /locus_tag="hCG_1741694" /note="gene_id=hCG1741694.2 transcript_id=hCT2265228.0 protein_id=hCP1806944.0 isoform=CRA_a" /codon_start=1 /product="hCG1741694, isoform CRA_a" /protein_id="EAW91598.1" /translation="MVLAHSGGLDTSCMLVWLKEQGHVVIAYLANIGQKEDFEKDRKK ACKLGAKKVFIEEVSREFVEEFIWPAIQSSALYEDYYLLGTSLARLCIAHKQVEITQQ EGAKYVSYGIMGKENDQVQFELTCSLAPRLRMPEFYYWLNGCNDLMEYTKQHRIPIPV TLKNPWIMDENLMCISYEAGILEKHKYHKHLQTLAGIILYYAHLHIEAFTMNQEECKI KQGLGVKFAELVYTSFWHSPECEFVHHCITKSQE" CDS complement(80608..81084) /locus_tag="hCG_1741694" /note="gene_id=hCG1741694.2 transcript_id=hCT1779841.1 protein_id=hCP1703376.2 isoform=CRA_b" /codon_start=1 /product="hCG1741694, isoform CRA_b" /protein_id="EAW91599.1" /translation="MSSKGSMVLAHSGGLDTSCMLVWLKEQGHVVIAYLANIGQKEDF EKDRKKACKLGAKKVFIEEVSREFVEEFIWPAIQSSALYEDYYLLGTSLARLCIAHKQ VEITQQEGAKYVSYGIMGKENDQVQFELTCSLAPRLRSLLPGGCPSSTTGSMAAMI" gene 111498..145901 /locus_tag="hCG_1741982" /note="gene_id=hCG1741982.1" mRNA join(111498..111632,114495..114714,125397..130356, 136230..136987,137031..137173,142799..145901) /locus_tag="hCG_1741982" /product="hCG1741982" /note="gene_id=hCG1741982.1 transcript_id=hCT1780139.2; splice donor-acceptor pairs covered / total pairs = 0/5; created on 01-DEC-2003" CDS join(126639..130356,136230..136231) /locus_tag="hCG_1741982" /note="gene_id=hCG1741982.1 transcript_id=hCT1780139.2 protein_id=hCP1703419.1" /codon_start=1 /product="hCG1741982" /protein_id="EAW91600.1" /translation="MCGCQPAWGRPYHGGNHSDQERFWLAIQKRQMARSKGSFQMRED IVEDEGVSGTGDEENTSRRLLHPKHQEAFLKTKDDAINGDKKAKKGRRKLKLWKHSEK EPETSVAEDLRVFESRRRINVANKQINPEHWADILAKVFGKNLPTGTEVSPIIKTTSS PFLSLVVTPPLPAVSPPLASPIQTATSAEESSADVPLLSEGKHILSTISSASMGLEHH NNGVILVEPEVTSTPLEEVVDEYSKKTEEMTSTEGDLKGTAASTLISEPYEQSPTLHT LDTVYEEPTHEETETEGWSAADVGSSPDPTSSEYELPLVVVSLAESKPVQYFDPDLET NSQPHEDNIKEYSFAHLTPTAIIWFNDSSTSLSFEDSTVGEQGVPGKSHLQGPTENIQ LVKSSFSTQDTLLIKKGMKEMSQTLQGGNMLEGDPTHSRSSENEGQESKSITLPDSTL GITSSTSPVKKPAETTVVTLLHKDTTTETTPRQKVASSSTMSTHPSRRRPNGRKLHPH KFHHRHKQTPPTTFAPLETFSTQPTQATDIKISNQMESSLVPTSWEINTVNTPKQLEM EKNVELISKGTPRRKHGKRPNKHRYTPSTVSSRASASKPSPSPENKHRNIVTPSSETT LLPRNVSLKTEGVYDSLDYTTTTRKIHSSHHKVQDTLPVMYKPTSDGKEIQDDVATNV DKHKSDILVPGESITNVTQTSRSLVSTMGEFKEESSPVGFPGIPTWNPSRKAQPGRLQ TDIHVTTSGETPTDPPLVNELEDVDFTSEFLSSVTVSTPFHQEEAGFSTILSSIKVEM ASSQVETTTLGQDHHETTVAILHSETRPQNHILTAAWMKEPASLSPPMILLSLGQTTT TKPELLSPRTSQICKDSKENVFLNYMGNPETEATPVKNEGTQRMSGPNELSTPSSDHD AFNLSTKLELEKQVFDSRSLTRGPDSHHQDGRVHASHQLTRIPAKPILPTGTVRLPEM STQSTSRYFVTFQPPHHGTNKPEITTYPSRALPESKQFTTPRVASTTPLLSHMSKPSI SSKFADLRTDQSNGSYKVFGNSNIPEARNSVGKPLSPRIYHYSNGRLPFFTNRTLSFS QLGVTRRPQIPSSPVPVMRERKVNPGSYNRIYSHSTFHLDFGLPAPPLLHTPWTMVSP PTNLQNIPMVSSTQSSVSFITSSVQSSGSIHQSGSKFFAGGPPASKFWPLGEKPQILT KSPQTVSVTAETDAVFPCEAIGKPKPFVTWTKVST" gene complement(363014..584299) /locus_tag="hCG_1988622" /note="gene_id=hCG1988622.0" mRNA complement(join(363014..363902,398690..398727, 411306..411427,415202..415351,472470..472517, 569520..569661,583040..583178,584274..584299)) /locus_tag="hCG_1988622" /product="hCG1988622, transcript variant hCT2265235" /note="gene_id=hCG1988622.0 transcript_id=hCT2265235.0; splice donor-acceptor pairs covered / total pairs = 7/7; created on 26-AUG-2002" mRNA complement(join(411306..411427,415202..415351, 478873..478927)) /locus_tag="hCG_1988622" /product="hCG1988622, transcript variant hCT2265234" /note="gene_id=hCG1988622.0 transcript_id=hCT2265234.0; splice donor-acceptor pairs covered / total pairs = 1/2; created on 26-AUG-2002" CDS complement(join(411310..411427,415202..415351, 472470..472517,569520..569661,583040..583046)) /locus_tag="hCG_1988622" /note="gene_id=hCG1988622.0 transcript_id=hCT2265235.0 protein_id=hCP1806936.0 isoform=CRA_a" /codon_start=1 /product="hCG1988622, isoform CRA_a" /protein_id="EAW91601.1" /translation="MSVTDQAFVTLATDDIYCQGALVLGQSLRRHRLTRKLVVLITPQ VSSLLRCTPDLEEDHGQDLIPLSPLVFMSLVCALLNTCQAHRVHDNKPNIILIMVDNL GIGDLGCYGNDTIRTPHIHCLAREGVRLTQHISATSICSPSWSVFLTGRYPI" CDS complement(join(411310..411427,415202..415335)) /locus_tag="hCG_1988622" /note="gene_id=hCG1988622.0 transcript_id=hCT2265234.0 protein_id=hCP1806935.0 isoform=CRA_b" /codon_start=1 /product="hCG1988622, isoform CRA_b" /protein_id="EAW91602.1" /translation="MSLVCALLNTCQAHRVHDNKPNIILIMVDNLGIGDLGCYGNDTI RTPHIHCLAREGVRLTQHISATSICSPSWSVFLTGRYPI" gap 471455..471474 /estimated_length=20 gap 474676..474695 /estimated_length=20 gene 502199..510218 /locus_tag="hCG_1741980" /note="gene_id=hCG1741980.1" /pseudo mRNA join(502199..502363,503565..503683,509524..510218) /locus_tag="hCG_1741980" /note="gene_id=hCG1741980.1 transcript_id=hCT1780137.3; splice donor-acceptor pairs covered / total pairs = 0/2; created on 20-JAN-2004" /pseudo gene 523086..550057 /locus_tag="hCG_1988542" /note="gene_id=hCG1988542.0" mRNA join(523086..523132,524610..524759,528325..528446, 529582..529703,536442..536850,540453..540501, 545063..545197,545869..546031,547037..547158, 549690..550057) /locus_tag="hCG_1988542" /product="hCG1988542" /note="gene_id=hCG1988542.0 transcript_id=hCT2265114.0; splice donor-acceptor pairs covered / total pairs = 5/9; created on 26-AUG-2002" gap 535122..535345 /estimated_length=224 CDS join(536693..536850,540453..540501,545063..545173) /locus_tag="hCG_1988542" /note="gene_id=hCG1988542.0 transcript_id=hCT2265114.0 protein_id=hCP1806946.0" /codon_start=1 /product="hCG1988542" /protein_id="EAW91603.1" /translation="MGFLCFISWYSSFGFVRRWNCILMRNHDVTEQPMVLEKTASLML KEDVSYIERHKHGPFLLFLSLLHVHGKILNAIEDNDLRNSTFTYFTSDHGGHLEARDG HRS" gap 540504..541439 /estimated_length=936 gene <583045..>601080 /locus_tag="hCG_1818615" /note="gene_id=hCG1818615.1" mRNA join(<583045..583101,583396..583606,588442..588466, 600969..>601080) /locus_tag="hCG_1818615" /product="hCG1818615" /note="gene_id=hCG1818615.1 transcript_id=hCT1964426.1; splice donor-acceptor pairs covered / total pairs = 0/3; created on 26-AUG-2002" CDS join(583045..583101,583396..583606,588442..588466, 600969..>601080) /locus_tag="hCG_1818615" /note="gene_id=hCG1818615.1 transcript_id=hCT1964426.1 protein_id=hCP1779182.1" /codon_start=1 /product="hCG1818615" /protein_id="EAW91604.1" /translation="MVRGAARSGRGPADLRPGASPATPLILNTHAPSNDTARGTPPDL SGVSSCPVAQRTCLEYWYILFPQPSCPPTRSPLSTPWPTPALPDPRSHGELDSRNFKG GEDKLGAWEYLVRVSSKYNGESRQKYLPGSQKA" gap 663839..684162 /estimated_length=20324 gene <832259..858091 /locus_tag="hCG_2040553" /note="gene_id=hCG2040553.0" mRNA join(<832259..832614,834548..834594,856419..856512, 857591..858091) /locus_tag="hCG_2040553" /product="hCG2040553" /note="gene_id=hCG2040553.0 transcript_id=hCT2345782.0; splice donor-acceptor pairs covered / total pairs = 3/3; created on 18-JUN-2003" gene <832274..862129 /locus_tag="hCG_2039064" /note="gene_id=hCG2039064.0" mRNA join(<832274..832614,834548..834594,856419..856512, 857370..862129) /locus_tag="hCG_2039064" /product="hCG2039064" /note="gene_id=hCG2039064.0 transcript_id=hCT2343554.0; splice donor-acceptor pairs covered / total pairs = 3/3; created on 09-APR-2003" CDS join(<832365..832614,834548..834594,856419..856512, 857591..857685) /locus_tag="hCG_2040553" /note="gene_id=hCG2040553.0 transcript_id=hCT2345782.0 protein_id=hCP1911921.0" /codon_start=1 /product="hCG2040553" /protein_id="EAW91605.1" /translation="VPPSFTPLAGPDVDCLCLTWDVYLSAWCWCRDREIGVSQERPGR KPRERKVKPSETAFAVTQEKLITWSPCKLGDSPSSEAKTVWEERKPKVFAVGDSRESN LTYGAKKALGKTGLIFCVHSPCTGFLTCGCETSQPAKNELSGPTHIGINHPSHERSDE T" CDS join(<832365..832614,834548..834594,856419..856512, 857370..857470) /locus_tag="hCG_2039064" /note="gene_id=hCG2039064.0 transcript_id=hCT2343554.0 protein_id=hCP1908888.0" /codon_start=1 /product="hCG2039064" /protein_id="EAW91606.1" /translation="VPPSFTPLAGPDVDCLCLTWDVYLSAWCWCRDREIGVSQERPGR KPRERKVKPSETAFAVTQEKLITWSPCKLGDSPSSEAKTVWEERKPKVFAVGDSRESN LTYGAKKALGKTGLIFCVHSPCTGFLTCESLKTKLRFPKVLRTEARQLKPQKKITATY LYT" gene 871137..1030917 /gene="USP9Y" /locus_tag="hCG_15064" /note="gene_id=hCG15064.2" /db_xref="GeneID:8287" mRNA join(871137..871961,878540..878599,879294..879449, 890495..890643,892014..892093,895019..895131, 896481..896699,905519..905634,905905..906156, 906318..906456,908064..908216,909432..909536, 927099..927305,928413..928549,930391..930524, 940975..941062,943490..943832,945378..945473, 946556..946767,947926..948166,948513..948662, 949433..949553,956110..956240,956429..956707, 960314..960439,961406..961531,962939..963108, 980088..980196,980581..980727,981544..981690, 982739..982961,986033..986253,988329..988519, 1003588..1003761,1007811..1007952,1009764..1010514, 1010910..1011033,1012140..1012365,1012963..1013092, 1016233..1016418,1016833..1017053,1017139..1017227, 1026413..1026569,1026706..1026918,1027639..1027734, 1029352..1030917) /gene="USP9Y" /locus_tag="hCG_15064" /product="ubiquitin specific peptidase 9, Y-linked (fat facets-like, Drosophila), transcript variant hCT2265117" /note="gene_id=hCG15064.2 transcript_id=hCT2265117.0; splice donor-acceptor pairs covered / total pairs = 45/45; created on 26-AUG-2002" /db_xref="GeneID:8287" mRNA join(871137..871961,878540..878599,879294..879449, 890495..890643,892014..892093,895019..895131, 896481..896699,905519..905634,905905..906156, 906318..906456,908064..908216,909432..909536, 927099..927305,928413..928549,930391..930524, 940975..941062,943490..943832,945378..945473, 946556..946681,947975..948166,948513..948662, 949433..949553,956110..956240,956429..956707, 960314..960439,961406..961531,962939..963108, 980088..980196,980581..980727,981544..981690, 982739..982961,986033..986248,988331..988519, 1003588..1003761,1007811..1007952,1009764..1010514, 1010910..1011033,1012173..1012365,1012963..1013092, 1016233..1016418,1026413..1026569,1026706..1026918, 1027639..1027734,1029352..1030917) /gene="USP9Y" /locus_tag="hCG_15064" /product="ubiquitin specific peptidase 9, Y-linked (fat facets-like, Drosophila), transcript variant hCT6085" /note="gene_id=hCG15064.2 transcript_id=hCT6085.2; splice donor-acceptor pairs covered / total pairs = 39/43; created on 26-AUG-2002" /db_xref="GeneID:8287" CDS join(879354..879449,890495..890643,892014..892093, 895019..895131,896481..896699,905519..905634, 905905..906156,906318..906456,908064..908216, 909432..909536,927099..927305,928413..928549, 930391..930524,940975..941062,943490..943832, 945378..945473,946556..946767,947926..948166, 948513..948662,949433..949553,956110..956240, 956429..956707,960314..960439,961406..961531, 962939..963108,980088..980196,980581..980727, 981544..981690,982739..982961,986033..986253, 988329..988519,1003588..1003761,1007811..1007952, 1009764..1010514,1010910..1011033,1012140..1012365, 1012963..1013092,1016233..1016418,1016833..1017053, 1017139..1017227,1026413..1026569,1026706..1026918, 1027639..1027734,1029352..1029489) /gene="USP9Y" /locus_tag="hCG_15064" /note="gene_id=hCG15064.2 transcript_id=hCT2265117.0 protein_id=hCP1806950.0 isoform=CRA_b" /codon_start=1 /product="ubiquitin specific peptidase 9, Y-linked (fat facets-like, Drosophila), isoform CRA_b" /protein_id="EAW91608.1" /db_xref="GeneID:8287" /translation="MTAITHGSPVGGNDSQGQVLDGQSQHLFQQNQTSSPDSSNENSV ATPPPEEQGQGDAPPQHEDEEPAFPHTELANLDDMINRPRWVVPVLPKGELEVLLEAA IDLSVKGLDVKSEACQRFFRDGLTISFTKILMDEAVSGWKFEIHRCIINNTHRLVELC VAKLSQDWFPLLELLAMALNPHCKFHIYNGTRPCELISSNAQLPEDELFARSSDPRSP KGWLVDLINKFGTLNGFQILHDRFFNGSALNIQIIAALIKPFGQCYEFLSQHTLKKYF IPVIEIVPHLLENLTDEELKKEAKNEAKNDALSMIIKSLKNLASRISGQDETIKNLEI FRLKMILRLLQISSFNGKMNALNEINKVISSVSYYTHRHSNPEEEEWLTAERMAEWIQ QNNILSIVLQDSLHQPQYVEKLEKILRFVIKEKALTLQDLDNIWAAQAGKHEAIVKNV HDLLAKLAWDFSPGQLDHLFDCFKASWTNASKKQREKLLELIRRLAEDDKDGVMAHKV LNLLWNLAQSDDVPVDIMDLALSAHIKILDYSCSQDRDAQKIQWIDHFIEELRTNDKW VIPALKQIREICSLFGEASQNLSQTQRSPHIFYRHDLINQLQQNHALVTLVAENLATY MNSIRLYAGDHEDYDPQTVRLGSRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIW KCLAENAVYLCDREACFKWYSKLMGDEPDLDPDINKDFFESNVLQLDPSLLTENGMKC FERFFKAVNCRERKLIAKRRSYMMDDLELIGLDYLWRVVIQSSDEIANRAIDLLKEIY TNLGPRLKANQVVIHEDFIQSCFDRLKASYDTLCVFDGDKNSINCARQEAIRMVRVLT VIKEYINECDSDYHKERMILPMSRAFRGKHLSLIVRFPNQGRQVDELDIWSHTNDTIG SVRRCIVNRIKANVAHKKIELFVGGELIDSEDDRKLIGQLNLKDKSLITAKLTQINFN MPSSPDSSSDSSTASPGNHRNHYNDGPNLEVESCLPGVIMSVHPRYISFLWQVADLGS NLNMPPLRDGARVLMKLMPPDRTAVEKLRAVCLDHAKLGEGKLSPPLDSLFFGPSASQ VLYLTEVVYALLMPAGVPLTDGSSDFQVHFLKSGGLPLVLSMLIRNNFLPNTDMETRR GAYLNALKIAKLLLTAIGYGHVRAVAEACQPVVDGTDPITQINQVTHDQAVVLQSALQ SIPNPSSECVLRNESILLAQEISNEASRYMPDICVIRAIQKIIWASACGALGLVFSPN EEITKIYQMTTNGSNKLEVEDEQVCCEALEVMTLCFALLPTALDALSKEKAWQTFIID LLLHCPSKTVRQLAQEQFFLMCTRCCMGHRPLLFFITLLFTILGSTAREKGKYSGDYF TLLRHLLNYAYNGNINIPNAEVLLVSEIDWLKRIRDNVKNTGETGVEEPILEGHLGVT KELLAFQTSEKKYHFGCEKGGANLIKELIDDFIFPASKVYLQYLRSGELPAEQAIPVC SSPVTINAGFELLVALAIGCVRNLKQIVDCLTEMYYMGTAITTCEALTEWEYLPPVGP RPPKGFVGLKNAGATCYMNSVIQQLYMIPSIRNSILAIEGTGSDLHDDMFGDEKQDSE SNVDPRDDVFGYPHQFEDKPALSKTEDRKEYNIGVLRHLQVIFGHLAASQLQYYVPRG FWKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAILSKVLGGSFADQKIC QGCPHRYECEESFTTLNVDIRNHQNLLDSLEQYIKGDLLEGANAYHCEKCDKKVDTVK RLLIKKLPRVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMGPYTVAGVANLERDNV NSENELIEQKEQSDNETAGGTKYRLVGVLVHSGQASGGHYYSYIIQRNGKDDQTDHWY KFDDGDVTECKMDDDEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYEQM DMIDEDDEMIRYISELTIARPHQIIMSPAIERSVRKQNVKFMHNRLQYSLEYFQFVKK LLTCNGVYLNPAPGQDYLLPEAEEITMISIQLAARFLFTTGFHTKKIVRGPASDWYDA LCVLLRHSKNVRFWFTHNVLFNVSNRFSEYLLECPSAEVRGAFAKLIVFIAHFSLQDG SCPSPFASPGPSSQACDNLSLSDHLLRATLNLLRREVSEHGHHLQQYFNLFVMYANLG VAEKTQLLKLNVPATFMLVSLDEGPGPPIKYQYAELGKLYSVVSQLIRCCNVSSTMQS SINGNPPLPNPFGDLNLSQPIMPIQQNVLDILFVRTSYVKKIIEDCSNSEDTIKLLRF CSWENPQFSSTVLSELLWQVAYSYTYELRPYLDLLFQILLIEDSWQTHRIHNALKGIP DDRDGLFDTIQRSKNHYQKRAYQCIKCMVALFSSCPVAYQILQGNGDLKRKWTWAVEW LGDELERRPYTGNPQYSYNNWSPPVQSNETANGYFLERSHSARMTLAKACELCPEEEP DDQDAPDEHEPSPSEDAPLYPHSPASQYQQNNHVHGQPYTGPAAHHLNNPQKTGQRTQ ENYEGNEEVSSPQMKDQ" CDS join(879354..879449,890495..890643,892014..892093, 895019..895131,896481..896699,905519..905634, 905905..906156,906318..906456,908064..908216, 909432..909536,927099..927305,928413..928549, 930391..930524,940975..941062,943490..943832, 945378..945473,946556..946681,947975..948166, 948513..948662,949433..949553,956110..956240, 956429..956707,960314..960439,961406..961531, 962939..963108,980088..980196,980581..980727, 981544..981690,982739..982961,986033..986248, 988331..988395) /gene="USP9Y" /locus_tag="hCG_15064" /note="gene_id=hCG15064.2 transcript_id=hCT6085.2 protein_id=hCP35719.2 isoform=CRA_a" /codon_start=1 /product="ubiquitin specific peptidase 9, Y-linked (fat facets-like, Drosophila), isoform CRA_a" /protein_id="EAW91607.1" /db_xref="GeneID:8287" /translation="MTAITHGSPVGGNDSQGQVLDGQSQHLFQQNQTSSPDSSNENSV ATPPPEEQGQGDAPPQHEDEEPAFPHTELANLDDMINRPRWVVPVLPKGELEVLLEAA IDLSVKGLDVKSEACQRFFRDGLTISFTKILMDEAVSGWKFEIHRCIINNTHRLVELC VAKLSQDWFPLLELLAMALNPHCKFHIYNGTRPCELISSNAQLPEDELFARSSDPRSP KGWLVDLINKFGTLNGFQILHDRFFNGSALNIQIIAALIKPFGQCYEFLSQHTLKKYF IPVIEIVPHLLENLTDEELKKEAKNEAKNDALSMIIKSLKNLASRISGQDETIKNLEI FRLKMILRLLQISSFNGKMNALNEINKVISSVSYYTHRHSNPEEEEWLTAERMAEWIQ QNNILSIVLQDSLHQPQYVEKLEKILRFVIKEKALTLQDLDNIWAAQAGKHEAIVKNV HDLLAKLAWDFSPGQLDHLFDCFKASWTNASKKQREKLLELIRRLAEDDKDGVMAHKV LNLLWNLAQSDDVPVDIMDLALSAHIKILDYSCSQDRDAQKIQWIDHFIEELRTNDKW VIPALKQIREICSLFGEASQNLSQTQRSPHIFYRHDLINQLQQNHALVTLVAENLATY MNSIRLYAGDHEDYDPQTVRLGSRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIW KCLAENAVYLCDREACFKWYSKLMGDEPDLDPDINKDFFESNVLQLDPSLLTENGMKC FERFFKAVNCRERKLIAKRRSYMMDDLELIGLDYLWRVVIQSSDEIANRAIDLLKEIY TNLGPRLKANQVVIHEDFIQSCFDRLKASYDTLCVFDGDKNSINCARQEAIRMGRQVD ELDIWSHTNDTIGSVRRCIVNRIKANVAHKKIELFVGGELIDSEDDRKLIGQLNLKDK SLITAKLTQINFNMPSSPDSSSDSSTASPGNHRNHYNDGPNLEVESCLPGVIMSVHPR YISFLWQVADLGSNLNMPPLRDGARVLMKLMPPDRTAVEKLRAVCLDHAKLGEGKLSP PLDSLFFGPSASQVLYLTEVVYALLMPAGVPLTDGSSDFQVHFLKSGGLPLVLSMLIR NNFLPNTDMETRRGAYLNALKIAKLLLTAIGYGHVRAVAEACQPVVDGTDPITQINQV THDQAVVLQSALQSIPNPSSECVLRNESILLAQEISNEASRYMPDICVIRAIQKIIWA SACGALGLVFSPNEEITKIYQMTTNGSNKLEVEDEQVCCEALEVMTLCFALLPTALDA LSKEKAWQTFIIDLLLHCPSKTVRQLAQEQFFLMCTRCCMGHRPLLFFITLLFTILGS TAREKGKYSGDYFTLLRHLLNYAYNGNINIPNAEVLLVSEIDWLKRIRDNVKNTGETG VEEPILEGHLGVTKELLAFQTSEKKYHFGCEKGGANLIKELIDDFIFPASKVYLQYLR SGELPAEQAIPVCSSPVTINAGFELLVALAIGCVRNLKQIVDCLTEMYYMGTAITTCE ALTEWEYLPPVGPRPPKGFVGLKNAGATCYMNSVIQQLYMIPSIRNSILAIEGTGSDL HDDMFGDEKQDIMLIPEMMYLDILINLKTSQH" gene complement(971955..973693) /locus_tag="hCG_1817987" /note="gene_id=hCG1817987.1" mRNA complement(join(971955..972636,972989..973693)) /locus_tag="hCG_1817987" /product="hCG1817987" /note="gene_id=hCG1817987.1 transcript_id=hCT1960754.1; splice donor-acceptor pairs covered / total pairs = 0/1; created on 26-AUG-2002" CDS complement(join(972490..972636,972989..973612)) /locus_tag="hCG_1817987" /note="gene_id=hCG1817987.1 transcript_id=hCT1960754.1 protein_id=hCP1773089.0" /codon_start=1 /product="hCG1817987" /protein_id="EAW91609.1" /translation="MNCGQYIHDFNTSHTEKQKDNILARIGRTSSNNAKKEISSLTKT NFSKSSFKMLAISKDHKSKNSQLSAASQNFGEKHSLISLQSKEYGASKFNYQLNLLAP QSPSNTRNTVGGFQEPEKLDPVEPHQQDTVVLKVAAEKPGRALSDPREKKAGMENRPQ IYPLMPQMSGPVTAARATGSANKEESTLLLIDPLIAHGATNMQTSVPRKKRKLIDDRR NQPFVKRVRFSTKLTKCRQILRYCGEEERWLHSDPAIN" gap 1019859..1021492 /estimated_length=1634 gene 1074160..1090535 /gene="DDX3Y" /locus_tag="hCG_14649" /note="gene_id=hCG14649.2" /db_xref="GeneID:8653" mRNA join(1074160..1074470,1074991..1075037,1077593..1077650, 1079416..1079463,1081896..1082025,1082784..1082939, 1083020..1083119,1083775..1083910,1084621..1084706, 1084941..1085039,1085124..1085284,1085687..1085831, 1085940..1086084,1086318..1086499,1086574..1086691, 1086964..1087117,1087460..1087599,1088100..1088351, 1088406..1088539) /gene="DDX3Y" /locus_tag="hCG_14649" /product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, transcript variant hCT2265142" /note="gene_id=hCG14649.2 transcript_id=hCT2265142.0; splice donor-acceptor pairs covered / total pairs = 18/18; created on 26-AUG-2002" /db_xref="GeneID:8653" mRNA join(1074914..1075037,1077593..1077650,1079416..1079463, 1081896..1082025,1082784..1082939,1083020..1083119, 1083775..1083910,1084621..1084706,1084941..1085039, 1085124..1085284,1085687..1085831,1085940..1086084, 1086318..1086499,1086574..1086691,1086964..1087117, 1087460..1087599,1088100..1090535) /gene="DDX3Y" /locus_tag="hCG_14649" /product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, transcript variant hCT5670" /note="gene_id=hCG14649.2 transcript_id=hCT5670.2; splice donor-acceptor pairs covered / total pairs = 16/16; created on 26-AUG-2002" /db_xref="GeneID:8653" CDS join(1074993..1075037,1077593..1077650,1079416..1079463, 1081896..1082025,1082784..1082939,1083020..1083119, 1083775..1083910,1084621..1084706,1084941..1085039, 1085124..1085284,1085687..1085831,1085940..1086084, 1086318..1086499,1086574..1086691,1086964..1087117, 1087460..1087599,1088100..1088179) /gene="DDX3Y" /locus_tag="hCG_14649" /note="gene_id=hCG14649.2 transcript_id=hCT5670.2 protein_id=hCP35720.2 isoform=CRA_a" /codon_start=1 /product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a" /protein_id="EAW91610.1" /db_xref="GeneID:8653" /translation="MSHVVVKNDPELDQQLANLDLNSEKQSGGASTASKGRYIPPHLR NREASKGFHDKDSSGWSCSKDKDAYSSFGSRDSRGKPGYFSERGSGSRGRFDDRGRSD YDGIGNRERPGFGRFERSGHSRWCDKSVEDDWSKPLPPSERLEQELFSGGNTGINFEK YDDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDL MACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTREL AVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKI GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLAR DFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKK GADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV RHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVP SWLENMAYEHHYKGGSRGRSKSNRFSGGFGARDYRQSSGSSSSGFGASRGSSSRSGGG GYGNSRGFGGGGYGGFYNSDGYGGNYNSQGVDWWGN" CDS join(1074993..1075037,1077593..1077650,1079416..1079463, 1081896..1082025,1082784..1082939,1083020..1083119, 1083775..1083910,1084621..1084706,1084941..1085039, 1085124..1085284,1085687..1085831,1085940..1086084, 1086318..1086499,1086574..1086691,1086964..1087117, 1087460..1087599,1088100..1088179) /gene="DDX3Y" /locus_tag="hCG_14649" /note="gene_id=hCG14649.2 transcript_id=hCT2265142.0 protein_id=hCP1806965.0 isoform=CRA_a" /codon_start=1 /product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a" /protein_id="EAW91611.1" /db_xref="GeneID:8653" /translation="MSHVVVKNDPELDQQLANLDLNSEKQSGGASTASKGRYIPPHLR NREASKGFHDKDSSGWSCSKDKDAYSSFGSRDSRGKPGYFSERGSGSRGRFDDRGRSD YDGIGNRERPGFGRFERSGHSRWCDKSVEDDWSKPLPPSERLEQELFSGGNTGINFEK YDDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDL MACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTREL AVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKI GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLAR DFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKK GADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV RHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVP SWLENMAYEHHYKGGSRGRSKSNRFSGGFGARDYRQSSGSSSSGFGASRGSSSRSGGG GYGNSRGFGGGGYGGFYNSDGYGGNYNSQGVDWWGN" gene complement(<1319226..1320388) /locus_tag="hCG_1808204" /note="gene_id=hCG1808204.1" mRNA complement(join(<1319226..1319401,1320121..1320388)) /locus_tag="hCG_1808204" /product="hCG1808204" /note="gene_id=hCG1808204.1 transcript_id=hCT1847464.1; splice donor-acceptor pairs covered / total pairs = 0/1; created on 26-AUG-2002" CDS complement(<1319226..1319375) /locus_tag="hCG_1808204" /note="gene_id=hCG1808204.1 transcript_id=hCT1847464.1 protein_id=hCP1740287.1" /codon_start=1 /product="hCG1808204" /protein_id="EAW91612.1" /translation="MERLAKQLQLEKGELELLKAEVNDMEHDVMHRWLIRVSCTTVIP MVSDLS" gene complement(1407661..1639949) /gene="UTY" /locus_tag="hCG_1812054" /note="gene_id=hCG1812054.1" /db_xref="GeneID:7404" mRNA complement(join(1407661..1409164,1410299..1410469, 1419560..1419686,1456989..1457130,1458239..1458426, 1462159..1462273,1464681..1464829,1465320..1465394, 1465468..1465532,1482837..1483042,1483883..1483988, 1485503..1485632,1494845..1495617,1514285..1514680, 1515205..1515300,1517159..1517251,1519049..1519268, 1519712..1519810,1525549..1525675,1528538..1528631, 1553142..1553176,1556201..1556255,1570277..1570397, 1574019..1574077,1608293..1608342,1629397..1629505, 1638530..1638593,1638790..1639949)) /gene="UTY" /locus_tag="hCG_1812054" /product="ubiquitously transcribed tetratricopeptide repeat gene, Y-linked" /note="gene_id=hCG1812054.1 transcript_id=hCT1955815.1; splice donor-acceptor pairs covered / total pairs = 27/27; created on 26-AUG-2002" /db_xref="GeneID:7404" CDS complement(join(1409138..1409164,1410299..1410469, 1419560..1419686,1456989..1457130,1458239..1458426, 1462159..1462273,1464681..1464829,1465320..1465394, 1465468..1465532,1482837..1483042,1483883..1483988, 1485503..1485632,1494845..1495617,1514285..1514680, 1515205..1515300,1517159..1517251,1519049..1519268, 1519712..1519810,1525549..1525675,1528538..1528631, 1553142..1553176,1556201..1556255,1570277..1570397, 1574019..1574077,1608293..1608342,1629397..1629505, 1638530..1638593,1638790..1638941)) /gene="UTY" /locus_tag="hCG_1812054" /note="gene_id=hCG1812054.1 transcript_id=hCT1955815.1 protein_id=hCP1764826.0" /codon_start=1 /product="ubiquitously transcribed tetratricopeptide repeat gene, Y-linked" /protein_id="EAW91613.1" /db_xref="GeneID:7404" /translation="MKSCAVSLTTAAVAFGDEAKKMAEGKASRESEEESVSLTVEERE ALGGMDSRLFGFVRLHEDGARTKTLLGKAVRCYESLILKAEGKVESDFFCQLGHFNLL LEDYSKALSAYQRYYSLQADYWKNAAFLYGLGLVYFYYNAFHWAIKAFQDVLYVDPSF CRAKEIHLRLGLMFKVNTDYKSSLKHFQLALIDCNPCTLSNAEIQFHIAHLYETQRKY HSAKEAYEQLLQTENLPAQVKATVLQQLGWMHHNMDLVGDKATKESYAIQYLQKSLEA DPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIGVLYQQQNQPMDA LQAYICAVQLDHGHAAAWMDLGTLYESCNQPQDAIKCYLNAARSKRCSNTSTLAARIK FLQNGSDNWNGGQSLSHHPVQQVYSLCLTPQKLQHLEQLRANRDNLNPAQKHQLEQLE SQFVLMQQMRHKEVAQVRTTGIHNGAITDSSLPTNSVSNRQPHGALTRVSSVSQPGVR PACVEKLLSSGAFSAGCIPCGTSKILGSTDTILLGSNCIAGSESNGNVPYLQQNTHTL PHNHTDLNSSTEEPWRKQLSNSAQGLHKSQSSCLSGPNEEQPLFSTGSAQYHQATSTG IKKANEHLTLPSNSVPQGDADSHLSCHTATSGGQQGIMFTKESKPSKNRSLVPETSRH TGDTSNGCADVKGLSNHVHQLIADAVSSPNHGDSPNLLIADNPQLSALLIGKANGNVG TGTCDKVNNIHPAVHTKTDHSVASSPSSAISTATPSPKSTEQRSINSVTSLNSPHSGL HTVNGEGLGKSQSSTKVDLPLASHRSTSQILPSMSVSICPSSTEVLKACRNPGKNGLS NSCILLDKCPPPRPPTSPYPPLPKDKLNPPTPSIYLENKRDAFFPPLHQFCTNPKNPV TVIRGLAGALKLDLGLFSTKTLVEANNEHMVEVRTQLLQPADENWDPTGTKKIWRCES NRSHTTIAKYAQYQASSFQESLREENEKRTQHKDHSDNESTSSENSGRRRKGPFKTIK FGTNIDLSDNKKWKLQLHELTKLPAFARVVSAGNLLTHVGHTILGMNTVQLYMKVPGS RTPGHQENNNFCSVNINIGPGDCEWFVVPEDYWGVLNDFCEKNNLNFLMSSWWPNLED LYEANVPVYRFIQRPGDLVWINAGTVHWVQAVGWCNNIAWNVGPLTACQYKLAVERYE WNKLKSVKSPVPMVHLSWNMARNIKVSDPKLFEMIKYCLLKILKQYQTLREALVAAGK EVIWHGRTNDEPAHYCSICEVEVFNLLFVTNESNTQKTYIVHCHDCARKTSKSLENFV VLEQYKMEDLIQVYDQFTLALSLSSSS" gene 1445843..1446825 /locus_tag="hCG_1641276" /note="gene_id=hCG1641276.4" /pseudo mRNA 1445843..1446825 /locus_tag="hCG_1641276" /note="gene_id=hCG1641276.4 transcript_id=hCT1771681.2; overlap evidence=yes; created on 23-DEC-2003" /pseudo gene <1862819..1865302 /gene="TMSB4Y" /locus_tag="hCG_14635" /note="gene_id=hCG14635.2" /db_xref="GeneID:9087" mRNA join(<1862819..1863711,1864501..1865302) /gene="TMSB4Y" /locus_tag="hCG_14635" /product="thymosin, beta 4, Y-linked" /note="gene_id=hCG14635.2 transcript_id=hCT5656.3; splice donor-acceptor pairs covered / total pairs = 1/1; created on 26-AUG-2002" /db_xref="GeneID:9087" CDS join(<1863420..1863711,1864501..1864535) /gene="TMSB4Y" /locus_tag="hCG_14635" /note="gene_id=hCG14635.2 transcript_id=hCT5656.3 protein_id=hCP33228.3" /codon_start=1 /product="thymosin, beta 4, Y-linked" /protein_id="EAW91614.1" /db_xref="GeneID:9087" /translation="GKVSPLFLWKEEAHERETAGDGGREGLSQVAGRRAEAQFPVQRP GQVAVSHAHFGLLPTASSAAMSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQE RQAGES" gene 1910989..2076448 /locus_tag="hCG_1811117" /note="gene_id=hCG1811117.3" /pseudo mRNA join(1910989..1911357,2017779..2018022,2028344..2028527, 2030962..2031075,2046535..2046740,2050493..2050629, 2052696..2052863,2062081..2062309,2063251..2063471, 2064597..2064738,2072191..2076448) /locus_tag="hCG_1811117" /note="gene_id=hCG1811117.3 transcript_id=hCT1951519.3; splice donor-acceptor pairs covered / total pairs = 0/10; created on 04-FEB-2004" /pseudo gap 2057706..2061728 /estimated_length=4023 gap 2100226..2108690 /estimated_length=8465 gap 2149881..2150878 /estimated_length=998 gap 2179389..2179408 /estimated_length=20 gap 2183809..2218860 /estimated_length=35052 gene 2218861..2219521 /locus_tag="hCG_1988454" /note="gene_id=hCG1988454.0" mRNA join(2218861..2218950,2219143..2219385,2219400..2219521) /locus_tag="hCG_1988454" /product="hCG1988454, transcript variant hCT2264970" /note="gene_id=hCG1988454.0 transcript_id=hCT2264970.0; splice donor-acceptor pairs covered / total pairs = 1/2; created on 26-AUG-2002" mRNA join(2218861..2218950,2219143..2219517) /locus_tag="hCG_1988454" /product="hCG1988454, transcript variant hCT2264971" /note="gene_id=hCG1988454.0 transcript_id=hCT2264971.0; splice donor-acceptor pairs covered / total pairs = 1/1; created on 26-AUG-2002" mRNA join(2218861..2218950,2219143..2219393,2219417..2219517) /locus_tag="hCG_1988454" /product="hCG1988454, transcript variant hCT2264969" /note="gene_id=hCG1988454.0 transcript_id=hCT2264969.0; splice donor-acceptor pairs covered / total pairs = 1/2; created on 26-AUG-2002" mRNA join(2218861..2218950,2219143..2219385,2219399..>2219517) /locus_tag="hCG_1988454" /product="hCG1988454, transcript variant hCT2264972" /note="gene_id=hCG1988454.0 transcript_id=hCT2264972.0; splice donor-acceptor pairs covered / total pairs = 1/2; created on 26-AUG-2002" CDS join(2219215..2219385,2219399..>2219517) /locus_tag="hCG_1988454" /note="gene_id=hCG1988454.0 transcript_id=hCT2264972.0 protein_id=hCP1806975.0 isoform=CRA_c" /codon_start=1 /product="hCG1988454, isoform CRA_c" /protein_id="EAW91617.1" /translation="MAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHD PLSQESELEEPLSLLPYLPEQQLSLGPAARPQRSHQQGASHVDDNKMNVLQT" CDS join(2219215..2219393,2219417..2219429) /locus_tag="hCG_1988454" /note="gene_id=hCG1988454.0 transcript_id=hCT2264969.0 protein_id=hCP1806974.0 isoform=CRA_a" /codon_start=1 /product="hCG1988454, isoform CRA_a" /protein_id="EAW91615.1" /translation="MAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHD PLSQESELEEPLSKGRSSN" CDS join(2219215..2219385,2219400..2219429) /locus_tag="hCG_1988454" /note="gene_id=hCG1988454.0 transcript_id=hCT2264970.0 protein_id=hCP1806976.0 isoform=CRA_b" /codon_start=1 /product="hCG1988454, isoform CRA_b" /protein_id="EAW91616.1" /translation="MAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHD PLSQESELEEPLSYSPISLSSN" CDS 2219215..2219418 /locus_tag="hCG_1988454" /note="gene_id=hCG1988454.0 transcript_id=hCT2264971.0 protein_id=hCP1806973.0 isoform=CRA_d" /codon_start=1 /product="hCG1988454, isoform CRA_d" /protein_id="EAW91618.1" /translation="MAAVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHD PLSQESELEEPLSKGRPSTPLSP" gene 2660772..>2687449 /locus_tag="hCG_1647242" /note="gene_id=hCG1647242.2" mRNA join(2660772..2660921,2669399..2669536,2671490..2671856, 2673763..2674265,2684688..2684831,2686576..2686797, 2687011..2687070,2687417..>2687449) /locus_tag="hCG_1647242" /product="hCG1647242" /note="gene_id=hCG1647242.2 transcript_id=hCT1647369.1; splice donor-acceptor pairs covered / total pairs = 0/7; created on 26-AUG-2002" CDS join(2660811..2660921,2669399..2669536,2671490..2671856, 2673763..2674265,2684688..2684831,2686576..2686797, 2687011..2687070,2687417..>2687449) /locus_tag="hCG_1647242" /note="gene_id=hCG1647242.2 transcript_id=hCT1647369.1 protein_id=hCP1603629.2" /codon_start=1 /product="hCG1647242" /protein_id="EAW91619.1" /translation="MTQEPSAIMREVPEMVNILKGTGDIHNTEIQNDNGKVNLGAKYR APVGQLKATSTAARLKTRVSGFLGKGSLTTPDSSELGPLGKEENPSAFLERLREALRK YTPLSPKSLEGQLILKDKFITQSTADIRRKLQKQALGPEQNLETLLNLATFVFYNRDQ EEQAQKEKQDQRKAAALVMALRQTNIDGSERTETEQANHLEGLLIKDGEPIEHDCQQI IVQTYATRDDLLEVPLTNPDLNLYTDGSSVVENGIRRAGYAIVSDVTILESKPLVPGT SAQLAELVALTRALELGKGKIINVYTDSKYAYLILHAHAAIWKEWEFLTSGNPHGCHR EVMELLHMVQETKEVGVLHYQSHQNGKERGEQQRKQLAESCIPIFAALKIFFNIIASQ LTHNNADIGTAGDCDLKQLKMSAYTTSCLMGVQGGLPLPPSAPSLNCPLFRRSGKVGS RKDRRPEPWSRYQVIRSPSRCPLRTPLLPSGVRRSVKPAGLPVPKAELKAKISQEHSR RRQRRWRPDLALSPLGEP" gene 2686259..3006637 /gene="NLGN4Y" /locus_tag="hCG_1988457" /note="gene_id=hCG1988457.1" /db_xref="GeneID:22829" mRNA join(2686259..2686411,2784535..2785105,2881974..2882033, 2885632..2885784,2911134..2911244,2914196..2914317, 2986703..2986888,2992245..2993034,3002928..3006242) /gene="NLGN4Y" /locus_tag="hCG_1988457" /product="neuroligin 4, Y-linked, transcript variant hCT2357446" /note="gene_id=hCG1988457.1 transcript_id=hCT2357446.0; splice donor-acceptor pairs covered / total pairs = 8/8; created on 15-JUL-2004" /db_xref="GeneID:22829" mRNA join(2686259..2686411,2784535..2785105,2881974..2882033, 2885632..2885784,2911134..2911244,2986703..2986888, 2992245..2993034,3002928..3006242) /gene="NLGN4Y" /locus_tag="hCG_1988457" /product="neuroligin 4, Y-linked, transcript variant hCT2357447" /note="gene_id=hCG1988457.1 transcript_id=hCT2357447.0; splice donor-acceptor pairs covered / total pairs = 7/7; created on 15-JUL-2004" /db_xref="GeneID:22829" mRNA join(2686259..2686411,2784535..2785105,2885632..2885784, 2986703..2986888,2992245..2993034,3002928..3006242) /gene="NLGN4Y" /locus_tag="hCG_1988457" /product="neuroligin 4, Y-linked, transcript variant hCT2357448" /note="gene_id=hCG1988457.1 transcript_id=hCT2357448.0; splice donor-acceptor pairs covered / total pairs = 5/5; created on 15-JUL-2004" /db_xref="GeneID:22829" mRNA join(2687085..2687449,2784523..2785105,2885632..2885784, 2986703..2986888,2992245..2993034,3002928..3006162) /gene="NLGN4Y" /locus_tag="hCG_1988457" /product="neuroligin 4, Y-linked, transcript variant hCT2357445" /note="gene_id=hCG1988457.1 transcript_id=hCT2357445.0; splice donor-acceptor pairs covered / total pairs = 5/5; created on 15-JUL-2004" /db_xref="GeneID:22829" mRNA join(2687115..2687221,2784523..2785109,2986674..2986888, 2992245..2993034,3002928..>3003774) /gene="NLGN4Y" /locus_tag="hCG_1988457" /product="neuroligin 4, Y-linked, transcript variant hCT2264977" /note="gene_id=hCG1988457.1 transcript_id=hCT2264977.0; splice donor-acceptor pairs covered / total pairs = 3/4; created on 26-AUG-2002" /db_xref="GeneID:22829" gene complement(2753093..>2758190) /locus_tag="hCG_2041411" /note="gene_id=hCG2041411.0" mRNA complement(2753093..>2758190) /locus_tag="hCG_2041411" /product="hCG2041411" /note="gene_id=hCG2041411.0 transcript_id=hCT2346642.0; overlap evidence=no; created on 18-JUN-2003" CDS complement(2754887..>2755891) /locus_tag="hCG_2041411" /note="gene_id=hCG2041411.0 transcript_id=hCT2346642.0 protein_id=hCP1911922.0" /codon_start=1 /product="hCG2041411" /protein_id="EAW91626.1" /translation="QVVKACEVCQKNYPLVYHKAPVGEQRIGHYPGEDWQLDFSHMPK SKGFQYLLVCVDTFTNWIEAFSYKTEKAQEVIKVLIIPRFRLPQSLQSENVPAFKATI TQGISKALGIQYRLHCSWRPQSSGKVEKANQTLKRHLRKLTQETHLPWPTLLPMALLR IRNSPHKIGLSPYEMLYGRPFLTNDLLLNQEMANFVKDITLAKYQQNLKNLPEGCHRE QGTELFQPGDLVLVKSLPSTSPSMDSLWEGPYSIILSTPIAVNMAGVETWIHHTRVKL WTSPEEPAGSSAQESQDQPDQLRYTCEPLEDLHLLFQKETSQTKKAPTTDPEERPLPP " mRNA join(2784631..2785105,2881974..2882033,2885632..2885784, 2986703..2986888,2992209..2993034,3002928..3006637) /gene="NLGN4Y" /locus_tag="hCG_1988457" /product="neuroligin 4, Y-linked, transcript variant hCT2264975" /note="gene_id=hCG1988457.1 transcript_id=hCT2264975.0; splice donor-acceptor pairs covered / total pairs = 4/5; created on 26-AUG-2002" /db_xref="GeneID:22829" CDS join(2784634..2785105,2881974..2882033,2885632..2885784, 2911134..2911244,2986703..2986888,2992245..2993034, 3002928..3003777) /gene="NLGN4Y" /locus_tag="hCG_1988457" /note="gene_id=hCG1988457.1 transcript_id=hCT2357447.0 protein_id=hCP1922677.0 isoform=CRA_c" /codon_start=1 /product="neuroligin 4, Y-linked, isoform CRA_c" /protein_id="EAW91622.1" /db_xref="GeneID:22829" /translation="MLRPQGLLWLPLLFTSVCVMLNSNVLLWITALAIKFTLIDSQAQ YPVVNTNYGKIQGLRTPLPSEILGPVEQYLGVPYASPPTGERRFQPPESPSSWTGIRN ATQFSAVCPQHLDERFLLHDMLPIWFTTSLDTLMTYVQDQNEDCLYLNIYVPMEDGTN IKRNADDITSNDHGEDKDIHEQNSKKPVMVYIHGGSYMEGTGNMIDGSILASYGNVIV ITINYRLGILAQNTLAHGNCKHRCQLHLQAPRDCKSAYPFRNEDEIRGFLSTGDQAAK GNYGLLDQIQALRWIEENVGAFGGDPKRVTIFGSGAGASCVSLLTLSHYSEGLFQKAI IQSGTALSSWAVNYQPAKYTRILADKVGCNMLDTTDMVECLKNKNYKELIQQTITPAT YHIAFGPVIDGDVIPDDPQILMEQGEFLNYDIMLGVNQGEGLKFVDGIVDNEDGVTPN DFDFSVSNFVDNLYGYPEGKDTLRETIKFMYTDWADKENPETRRKTLVALFTDHQWVA PAVATADLHAQYGSPTYFYAFYHHCQSEMKPSWADSAHGDEVPYVFGIPMIGPTELFS CNFSKNDVMLSAVVMTYWTNFAKTGDPNQPVPQDTKFIHTKPNRFEEVAWSKYNPKDQ LYLHIGLKPRVRDHYRATKVAFWLELVPHLHNLNEIFQYVSTTTKVPPPDMTSFPYGT RRSPAKIWPTTKRPAITPANNPKHSKDPHKTGPEDTTVLIETKRDYSTELSVTIAVGA SLLFLNILAFAALYYKKDKRRHETHRHPSPQRNTTNDITHIQNEEIMSLQMKQLEHDH ECESLQAHDTLRLTCPPDYTLTLRRSPDDIPFMTPNTITMIPNTLMGMQPLHTFKTFS GGQNSTNLPHGHSTTRV" CDS join(2784634..2785105,2881974..2882033,2885632..2885784, 2986703..2986888,2992209..2993034,3002928..3003777) /gene="NLGN4Y" /locus_tag="hCG_1988457" /note="gene_id=hCG1988457.1 transcript_id=hCT2264975.0 protein_id=hCP1806970.0 isoform=CRA_a" /codon_start=1 /product="neuroligin 4, Y-linked, isoform CRA_a" /protein_id="EAW91620.1" /db_xref="GeneID:22829" /translation="MLRPQGLLWLPLLFTSVCVMLNSNVLLWITALAIKFTLIDSQAQ YPVVNTNYGKIQGLRTPLPSEILGPVEQYLGVPYASPPTGERRFQPPESPSSWTGIRN ATQFSAVCPQHLDERFLLHDMLPIWFTTSLDTLMTYVQDQNEDCLYLNIYVPMEDGTN IKRNADDITSNDHGEDKDIHEQNSKKPVMVYIHGGSYMEGTGNMIDGSILASYGNVIV ITINYRLGILGFLSTGDQAAKGNYGLLDQIQALRWIEENVGAFGGDPKRVTIFGSGAG ASCVSLLTLSHYSEGFHLHVRNFAPAGLFQKAIIQSGTALSSWAVNYQPAKYTRILAD KVGCNMLDTTDMVECLKNKNYKELIQQTITPATYHIAFGPVIDGDVIPDDPQILMEQG EFLNYDIMLGVNQGEGLKFVDGIVDNEDGVTPNDFDFSVSNFVDNLYGYPEGKDTLRE TIKFMYTDWADKENPETRRKTLVALFTDHQWVAPAVATADLHAQYGSPTYFYAFYHHC QSEMKPSWADSAHGDEVPYVFGIPMIGPTELFSCNFSKNDVMLSAVVMTYWTNFAKTG DPNQPVPQDTKFIHTKPNRFEEVAWSKYNPKDQLYLHIGLKPRVRDHYRATKVAFWLE LVPHLHNLNEIFQYVSTTTKVPPPDMTSFPYGTRRSPAKIWPTTKRPAITPANNPKHS KDPHKTGPEDTTVLIETKRDYSTELSVTIAVGASLLFLNILAFAALYYKKDKRRHETH RHPSPQRNTTNDITHIQNEEIMSLQMKQLEHDHECESLQAHDTLRLTCPPDYTLTLRR SPDDIPFMTPNTITMIPNTLMGMQPLHTFKTFSGGQNSTNLPHGHSTTRV" CDS join(2784634..2785105,2885632..2885784,2986703..2986888, 2992245..2993034,3002928..3003777) /gene="NLGN4Y" /locus_tag="hCG_1988457" /note="gene_id=hCG1988457.1 transcript_id=hCT2357448.0 protein_id=hCP1922678.0 isoform=CRA_d" /codon_start=1 /product="neuroligin 4, Y-linked, isoform CRA_d" /protein_id="EAW91623.1" /db_xref="GeneID:22829" /translation="MLRPQGLLWLPLLFTSVCVMLNSNVLLWITALAIKFTLIDSQAQ YPVVNTNYGKIQGLRTPLPSEILGPVEQYLGVPYASPPTGERRFQPPESPSSWTGIRN ATQFSAVCPQHLDERFLLHDMLPIWFTTSLDTLMTYVQDQNEDCLYLNIYVPMEDDIH EQNSKKPVMVYIHGGSYMEGTGNMIDGSILASYGNVIVITINYRLGILGFLSTGDQAA KGNYGLLDQIQALRWIEENVGAFGGDPKRVTIFGSGAGASCVSLLTLSHYSEGLFQKA IIQSGTALSSWAVNYQPAKYTRILADKVGCNMLDTTDMVECLKNKNYKELIQQTITPA TYHIAFGPVIDGDVIPDDPQILMEQGEFLNYDIMLGVNQGEGLKFVDGIVDNEDGVTP NDFDFSVSNFVDNLYGYPEGKDTLRETIKFMYTDWADKENPETRRKTLVALFTDHQWV APAVATADLHAQYGSPTYFYAFYHHCQSEMKPSWADSAHGDEVPYVFGIPMIGPTELF SCNFSKNDVMLSAVVMTYWTNFAKTGDPNQPVPQDTKFIHTKPNRFEEVAWSKYNPKD QLYLHIGLKPRVRDHYRATKVAFWLELVPHLHNLNEIFQYVSTTTKVPPPDMTSFPYG TRRSPAKIWPTTKRPAITPANNPKHSKDPHKTGPEDTTVLIETKRDYSTELSVTIAVG ASLLFLNILAFAALYYKKDKRRHETHRHPSPQRNTTNDITHIQNEEIMSLQMKQLEHD HECESLQAHDTLRLTCPPDYTLTLRRSPDDIPFMTPNTITMIPNTLMGMQPLHTFKTF SGGQNSTNLPHGHSTTRV" CDS join(2784634..2785105,2885632..2885784,2986703..2986888, 2992245..2993034,3002928..3003777) /gene="NLGN4Y" /locus_tag="hCG_1988457" /note="gene_id=hCG1988457.1 transcript_id=hCT2357445.0 protein_id=hCP1922675.0 isoform=CRA_d" /codon_start=1 /product="neuroligin 4, Y-linked, isoform CRA_d" /protein_id="EAW91625.1" /db_xref="GeneID:22829" /translation="MLRPQGLLWLPLLFTSVCVMLNSNVLLWITALAIKFTLIDSQAQ YPVVNTNYGKIQGLRTPLPSEILGPVEQYLGVPYASPPTGERRFQPPESPSSWTGIRN ATQFSAVCPQHLDERFLLHDMLPIWFTTSLDTLMTYVQDQNEDCLYLNIYVPMEDDIH EQNSKKPVMVYIHGGSYMEGTGNMIDGSILASYGNVIVITINYRLGILGFLSTGDQAA KGNYGLLDQIQALRWIEENVGAFGGDPKRVTIFGSGAGASCVSLLTLSHYSEGLFQKA IIQSGTALSSWAVNYQPAKYTRILADKVGCNMLDTTDMVECLKNKNYKELIQQTITPA TYHIAFGPVIDGDVIPDDPQILMEQGEFLNYDIMLGVNQGEGLKFVDGIVDNEDGVTP NDFDFSVSNFVDNLYGYPEGKDTLRETIKFMYTDWADKENPETRRKTLVALFTDHQWV APAVATADLHAQYGSPTYFYAFYHHCQSEMKPSWADSAHGDEVPYVFGIPMIGPTELF SCNFSKNDVMLSAVVMTYWTNFAKTGDPNQPVPQDTKFIHTKPNRFEEVAWSKYNPKD QLYLHIGLKPRVRDHYRATKVAFWLELVPHLHNLNEIFQYVSTTTKVPPPDMTSFPYG TRRSPAKIWPTTKRPAITPANNPKHSKDPHKTGPEDTTVLIETKRDYSTELSVTIAVG ASLLFLNILAFAALYYKKDKRRHETHRHPSPQRNTTNDITHIQNEEIMSLQMKQLEHD HECESLQAHDTLRLTCPPDYTLTLRRSPDDIPFMTPNTITMIPNTLMGMQPLHTFKTF SGGQNSTNLPHGHSTTRV" CDS join(2784634..2785109,2986674..2986888,2992245..2993034, 3002928..>3003774) /gene="NLGN4Y" /locus_tag="hCG_1988457" /note="gene_id=hCG1988457.1 transcript_id=hCT2264977.0 protein_id=hCP1806971.0 isoform=CRA_e" /codon_start=1 /product="neuroligin 4, Y-linked, isoform CRA_e" /protein_id="EAW91624.1" /db_xref="GeneID:22829" /translation="MLRPQGLLWLPLLFTSVCVMLNSNVLLWITALAIKFTLIDSQAQ YPVVNTNYGKIQGLRTPLPSEILGPVEQYLGVPYASPPTGERRFQPPESPSSWTGIRN ATQFSAVCPQHLDERFLLHDMLPIWFTTSLDTLMTYVQDQNEDCLYLNIYVPMEDGDN KNVLCSSVGFLSTGDQAAKGNYGLLDQIQALRWIEENVGAFGGDPKRVTIFGSGAGAS CVSLLTLSHYSEGLFQKAIIQSGTALSSWAVNYQPAKYTRILADKVGCNMLDTTDMVE CLKNKNYKELIQQTITPATYHIAFGPVIDGDVIPDDPQILMEQGEFLNYDIMLGVNQG EGLKFVDGIVDNEDGVTPNDFDFSVSNFVDNLYGYPEGKDTLRETIKFMYTDWADKEN PETRRKTLVALFTDHQWVAPAVATADLHAQYGSPTYFYAFYHHCQSEMKPSWADSAHG DEVPYVFGIPMIGPTELFSCNFSKNDVMLSAVVMTYWTNFAKTGDPNQPVPQDTKFIH TKPNRFEEVAWSKYNPKDQLYLHIGLKPRVRDHYRATKVAFWLELVPHLHNLNEIFQY VSTTTKVPPPDMTSFPYGTRRSPAKIWPTTKRPAITPANNPKHSKDPHKTGPEDTTVL IETKRDYSTELSVTIAVGASLLFLNILAFAALYYKKDKRRHETHRHPSPQRNTTNDIT HIQNEEIMSLQMKQLEHDHECESLQAHDTLRLTCPPDYTLTLRRSPDDIPFMTPNTIT MIPNTLMGMQPLHTFKTFSGGQNSTNLPHGHSTTRV" CDS join(2992355..2993034,3002928..3003777) /gene="NLGN4Y" /locus_tag="hCG_1988457" /note="gene_id=hCG1988457.1 transcript_id=hCT2357446.0 protein_id=hCP1922676.0 isoform=CRA_b" /codon_start=1 /product="neuroligin 4, Y-linked, isoform CRA_b" /protein_id="EAW91621.1" /db_xref="GeneID:22829" /translation="MLDTTDMVECLKNKNYKELIQQTITPATYHIAFGPVIDGDVIPD DPQILMEQGEFLNYDIMLGVNQGEGLKFVDGIVDNEDGVTPNDFDFSVSNFVDNLYGY PEGKDTLRETIKFMYTDWADKENPETRRKTLVALFTDHQWVAPAVATADLHAQYGSPT YFYAFYHHCQSEMKPSWADSAHGDEVPYVFGIPMIGPTELFSCNFSKNDVMLSAVVMT YWTNFAKTGDPNQPVPQDTKFIHTKPNRFEEVAWSKYNPKDQLYLHIGLKPRVRDHYR ATKVAFWLELVPHLHNLNEIFQYVSTTTKVPPPDMTSFPYGTRRSPAKIWPTTKRPAI TPANNPKHSKDPHKTGPEDTTVLIETKRDYSTELSVTIAVGASLLFLNILAFAALYYK KDKRRHETHRHPSPQRNTTNDITHIQNEEIMSLQMKQLEHDHECESLQAHDTLRLTCP PDYTLTLRRSPDDIPFMTPNTITMIPNTLMGMQPLHTFKTFSGGQNSTNLPHGHSTTR V" gene 3070410..3070582 /locus_tag="hCG_1642444" /note="gene_id=hCG1642444.4" /pseudo mRNA 3070410..3070582 /locus_tag="hCG_1642444" /note="gene_id=hCG1642444.4 transcript_id=hCT1642571.4; overlap evidence=no; created on 29-JAN-2004" /pseudo gene complement(3511177..3544360) /locus_tag="hCG_1650446" /note="gene_id=hCG1650446.3" mRNA complement(join(3511177..3511399,3544137..3544360)) /locus_tag="hCG_1650446" /product="hCG1650446" /note="gene_id=hCG1650446.3 transcript_id=hCT1650573.3; splice donor-acceptor pairs covered / total pairs = 0/1; created on 26-AUG-2002" CDS complement(join(3511393..3511399,3544137..3544264)) /locus_tag="hCG_1650446" /note="gene_id=hCG1650446.3 transcript_id=hCT1650573.3 protein_id=hCP1603613.3" /codon_start=1 /product="hCG1650446" /protein_id="EAW91627.1" /translation="MGKIALEAAQIPILQLPMSKEELMEENQRKLRGSVPHSCAHTRS " gap 4037980..4045340 /estimated_length=7361 gap 4049251..4052670 /estimated_length=3420 gap 4058557..4058576 /estimated_length=20 gap 4062179..4062198 /estimated_length=20 gene complement(<4096737..4165491) /locus_tag="hCG_1647439" /note="gene_id=hCG1647439.2" mRNA complement(join(<4096737..4096778,4115299..4115365, 4118934..4119015,4135654..4135756,4144654..4145224, 4146242..4146713,4146777..4147063,4165398..4165491)) /locus_tag="hCG_1647439" /product="hCG1647439" /note="gene_id=hCG1647439.2 transcript_id=hCT1647566.1; splice donor-acceptor pairs covered / total pairs = 0/7; created on 26-AUG-2002" CDS complement(join(4096737..4096778,4115299..4115365, 4118934..4119015,4135654..4135756,4144654..4145224, 4146242..4146713,4146777..4147056)) /locus_tag="hCG_1647439" /note="gene_id=hCG1647439.2 transcript_id=hCT1647566.1 protein_id=hCP1603623.2" /codon_start=1 /product="hCG1647439" /protein_id="EAW91628.1" /translation="MGQSQFKHQAYPSFMKLLLKQGGIKADSNNLVLLFQTIEKYCPW FPDKGSMDLLDWDRVGATLCQFMRDGVLLPISVWTDWALICVALLPFQSDDPLTSTLS DDEEESNFSLFSPQEEEHGDDPLPPPPIMEPVYVNSSSTKLLPPLPEEDVCHSSEWSV SHSSHPFGPLPSFKPTVSFDAPGPLLSETWNPASPHSTSWSSHSPSLSSSAPARPVRT SIQEAMCRAMASSGLDVWQLPIAIASKCEGAGGETGGGASLKPQSQSGLRGFVPPPCG YPYNCTRNAADSSTNSATDITLNSIPTTQCQLPPPLVPVQCPSTCTTGEDSIDLCSTL PLSLLPEEQPVLAPTGVKGPLPKNHIGLILGRASLALKGVIVHTGLIHANTSDEICLV ISTKSPIFIEPGECIALLLLLPELCPSTESATHTRGVENTFKQNKAAYWVWLHLEAVQ TDLEKSLMRKHSRTHLAVGDGEMPAGQYLNFHPLFDYLDYQVFYSVIGTKSQICTLLE RSETAFTELKDHKIKIMRGAYGKFRIKSYR" gene 4430528..4481373 /locus_tag="hCG_1801995" /note="gene_id=hCG1801995.1" mRNA join(4430528..4430576,4430715..4430797,4433950..4434121, 4481286..4481373) /locus_tag="hCG_1801995" /product="hCG1801995" /note="gene_id=hCG1801995.1 transcript_id=hCT1841255.1; splice donor-acceptor pairs covered / total pairs = 0/3; created on 26-AUG-2002" CDS join(4433976..4434121,4481286..4481289) /locus_tag="hCG_1801995" /note="gene_id=hCG1801995.1 transcript_id=hCT1841255.1 protein_id=hCP1712038.1" /codon_start=1 /product="hCG1801995" /protein_id="EAW91629.1" /translation="MTILMLQGRIILLLLQEVFLIPKPVIRVFHPSLLVPYARDRQLQ SVLCA" CONTIG join(AADB02034974.1:1..471454,gap(20), complement(AADB02034975.1:1..3201),gap(20),AADB02034976.1:1..60426, gap(224),complement(AADB02034977.1:1..5158),gap(936), AADB02034978.1:1..122399,gap(20324),AADB02034979.1:1..335696, gap(1634),AADB02034980.1:1..1036213,gap(4023), AADB02034981.1:1..38497,gap(8465),AADB02034982.1:1..41190,gap(998), AADB02034983.1:1..28510,gap(20),complement(AADB02034984.1:1..4400), gap(35052),AADB02034985.1:1..1819119,gap(7361), AADB02034986.1:1..3910,gap(3420), complement(AADB02034987.1:1..5886),gap(20), complement(AADB02034988.1:1..3602),gap(20), complement(AADB02034989.1:1..419372)) //