LOCUS CAJOBG010007967 5955 bp DNA linear INV 11-MAR-2021 DEFINITION Rotaria magnacalcarata genome assembly, contig: RM15_07967. ACCESSION CAJOBG010007967 CAJOBG010000000 VERSION CAJOBG010007967.1 DBLINK BioProject:PRJEB43238 BioSample:SAMEA8117367 Sequence Read Archive:ERR2983821, ERR2983822, ERR2983823, ERR2983824, ERR2983833, ERR2983834, ERR2983835, ERR2983836 KEYWORDS WGS. SOURCE Rotaria magnacalcarata ORGANISM Rotaria magnacalcarata Eukaryota; Metazoa; Spiralia; Gnathifera; Rotifera; Eurotatoria; Bdelloidea; Rotaria. REFERENCE 1 (bases 1 to 5955) AUTHORS Nowell W R. JOURNAL Submitted (24-FEB-2021) to the INSDC. IMPERIAL COLLEGE LONDON, Barraclough Lab, Department of Zoology | University of Oxford Zoology Research & Administration Building 11a Mansfield Road | Oxford | OX1 3SZ, United Kingdom COMMENT Maximum haplotype genome assembly for Rotaria magnacalcarata RM9 FEATURES Location/Qualifiers source 1..5955 /organism="Rotaria magnacalcarata" /mol_type="genomic DNA" /note="contig: RM15_07967" /db_xref="taxon:392030" mRNA 1182..1565 /locus_tag="OVN521_LOCUS27999" /note="ID:RM15|g27999.t1" /note="source:AUGUSTUS" exon 1182..1565 /locus_tag="OVN521_LOCUS27999" /note="ID:nbis-exon-37438" /note="source:AUGUSTUS" CDS 1182..1565 /codon_start=1 /transl_table=1 /locus_tag="OVN521_LOCUS27999" /note="ID:RM15|g27999.t1.cds" /note="source:AUGUSTUS" /protein_id="CAF4231470.1" /translation="MLYTARRAVPMDKYNRKLFESFLRFQESAKCSSTMNVNSHGPTF QGLNATSLGLCSFALTAFCVSMYLIGATVPVNVSMGVIMGAILFYSGATQSLAGYLEY CDGNNFGALTFVLTELFGLVWHPFI" gene 2215..3790 /locus_tag="OVN521_LOCUS28000" /note="ID:RM15|g28000" /note="source:AUGUSTUS" mRNA join(2215..2511,2566..2721,2804..3790) /locus_tag="OVN521_LOCUS28000" /note="ID:RM15|g28000.t1" /note="source:AUGUSTUS" CDS join(2215..2511,2566..2721,2804..3790) /codon_start=1 /transl_table=1 /locus_tag="OVN521_LOCUS28000" /note="ID:RM15|g28000.t1.cds" /note="source:AUGUSTUS" /protein_id="CAF4231485.1" /translation="MNGAEKDKMVDGSGIRRLTEEYRSKNQPQNSPEKTLSTPKRRRY DDNDNDIQEIEDNDNFQTVGKRNRKKTRTSINPNDHNTLEDNLDQAPSKGYQGQKNGK KINEQRRGEEINETLGKRDKINNTQQQTGEISLHSHSNYNITQHALQYALYLDLTSKE EVVKILNSGVFPLNGYLIEVTEFLAPPKLLICSRCNCPGHIKKECNGPFDRCKRCGVN KAQGDHSQCLIKCHHCEGDHIASDYRCPVITKFRGELIDELRKRPDLLPQNIQLFIPV EFRNGGKNYIGYQQKENIASQSQSYLPSSHINVWPSLKQSTQQNYVNESKPDIYEDIM KEIKSIRSDYEKLKFDFIQSEKELMIKYENNKSKSSTMLNLLMLQNTQQNDCISKVYT VVNEVVPIITSSLKSLHTFIEKIVKSTEDVNLKNEYNIIQFTIEQNLAMLNDRNDLII EHQRATTMLNEKTNDIFRHGFDLMSINEQ" exon 2215..2511 /locus_tag="OVN521_LOCUS28000" /note="ID:nbis-exon-72420" /note="source:AUGUSTUS" intron 2512..2565 /locus_tag="OVN521_LOCUS28000" /note="ID:intron-120385" /note="source:AUGUSTUS" exon 2566..2721 /locus_tag="OVN521_LOCUS28000" /note="ID:nbis-exon-72421" /note="source:AUGUSTUS" intron 2722..2803 /locus_tag="OVN521_LOCUS28000" /note="ID:intron-120386" /note="source:AUGUSTUS" exon 2804..3790 /locus_tag="OVN521_LOCUS28000" /note="ID:nbis-exon-72422" /note="source:AUGUSTUS" gene 4318..5955 /locus_tag="OVN521_LOCUS28001" /note="ID:RM15|g28001" /note="source:AUGUSTUS" mRNA 4318..5955 /locus_tag="OVN521_LOCUS28001" /note="ID:RM15|g28001.t1" /note="source:AUGUSTUS" exon 4318..5955 /locus_tag="OVN521_LOCUS28001" /note="ID:nbis-exon-5731" /note="source:AUGUSTUS" CDS 4318..>5198 /codon_start=1 /transl_table=1 /locus_tag="OVN521_LOCUS28001" /note="ID:RM15|g28001.t1.cds" /note="source:AUGUSTUS" /protein_id="CAF4231500.1" /translation="MNHLFFFGDFNAKHSHWNCTKSNPSGNQLFNWLEKSGVEVIAPK IATSRRSNAVIDFGITHDASGWKNEVLEEGTSDHRPILFQSSYCIDEGSLFRKTNWNI FTFFLSIIFEYWNTLVYNLDVNSFIELFSLFLSALWDRCSVYASVEKFRPPWPPSLVL LAREVNKCRRRYRRSKIPNHLENVLSVKRIFTEERCQFLQKQCEKKLSWMNENQNIWK YVKPIFHTFTSPFRGLTLENNNNEMNPNKIVEILADHYEKHFETPSYNRSNNAHRHSM CIYEEIASTPDLPLEQI" intron 5199..5955 /locus_tag="OVN521_LOCUS28001" /note="ID:intron-120387" /note="source:AUGUSTUS" 3'UTR 5199..5955 /locus_tag="OVN521_LOCUS28001" /note="ID:nbis-three_prime_utr-153" /note="source:AUGUSTUS" BASE COUNT 2084 a 953 c 997 g 1921 t ORIGIN 1 catgaagata attgggtgat tttagaacag aatctaactg gatatggatt tagtgaatgg 61 agtcatgtag aaatttaaac tgaaagtatt ttgtttttgc ataataaaaa cttcgacaac 121 aactaaaatt tattatgaag agacctgttg tttttttttc tacattaatc tttgataaca 181 tgaaaaaaag gttcataaac ctgccagttc ctgtgctctg aactgtataa ttcagttttc 241 tcgctcaact tttaaatgcg gatcttcagt gatgtatgat aaaacaaaaa cgaaaattca 301 cgaaaaataa ttaaatagtc gaagatcatt aaaatgagaa gattaaagag cagtacgaaa 361 cataccatga tattaaaatc gggatttaga taaaaaccaa ttaatcaatt atcgtttaga 421 gagttgaaaa gtttttgaaa agtctgaaag aaatttgaat attaagaata aaattgtttg 481 tcgttcttca cgttttaata aatacttcat tgcataaatc aaaaagaaga gagctgaatc 541 gataagttcc ttttaaaact ccatagttac ataatcttgc agctttttta tttaataaca 601 atataaattt ctctacgatg atcttaaatg gaaataaaaa aaatgtttta ttgtatttca 661 aatggtaatc ctgcgaaaac ttttctaagt gacttgtgaa ttttcttttt tttctcgtct 721 gaacgatgtt tagtatacat ggtcacaatt tataatacta aaatattgtc aaaaattttc 781 tatgtaaaac acgagctata gtctagcgca cacaatatat acgcgcatga ttaaaaaaaa 841 ggttatatca gctcatgtgg tatgattcag aggagataaa aatagaaaat gtttattatt 901 gaatttacag acaaatctta attaatgaga aatcaaaatc aaatcaagct tcattgatcg 961 ttgcaacttt taatttgaga tacatatcgc ttgtcatcgg aatgggtgtg gcgacaagcc 1021 cttataaatc gacttctctc ttttaaatca tagattgata caatcaacat gtttaattca 1081 tctcaagggt aacgactata tacgattgat taatttattc gattatttaa tcatgatcaa 1141 atttttttct tcttatttca ttttcaatcg accccgacac aatgttatat acggcacgac 1201 gagccgtacc tatggataaa tataatcgca aactatttga aagttttctt agatttcaag 1261 aatcggcgaa atgttcttca acaatgaatg taaattcaca tggtccaaca tttcagggtc 1321 ttaatgcaac atcactcggt ctatgctcat ttgctttaac agcattttgt gtttctatgt 1381 atttgatcgg tgcaactgta ccagtaaatg tatctatggg tgttatcatg ggtgctattc 1441 tcttttatag tggagccact caaagtttgg ctggttatct tgaatattgt gatggaaaca 1501 actttggcgc tttgacattt gttcttacag agctttttgg cttagtttgg catcccttta 1561 tatagttgct tttgattttc ttgctggtta taaaaatgaa tctgttttga ataacgcgat 1621 tggagttttt ttcttgcatg gacaattttt tacagcactg gtgctcctgt caagcgtacg 1681 cacaaatctt gttactattg ctctcttctt ttttcttctt atctgtttta ttctactaac 1741 aagcagtaag tttttaaatg aacatcaaaa tcttcaacga gcatccggag cttttggtat 1801 tctaacgaca ccattggctt ggtattcagc ttttgcacat ttacttaaca agagcgattg 1861 attcttcaaa tggcctttat ttgacatatc acataaacaa gccgagaaaa cgaaccattt 1921 taaagaagta gtttagaaag tgataaaaca tttgaagtgg catgttcatc agtgaaattc 1981 ttgcgactat gtattaaaat tttcattttt gttttcaatc tcctccttct acacgtaacg 2041 agcggtcgcg aaattttttt tctttcccgt cctctcgtgt aagtgtgtac aagtgtgtac 2101 actcagcgtg tttatacatt ctttataaca atatatatta actataaaat tctaattatc 2161 ttaattatct taattatttg gacccaaagt atggcttatt cgtattatag caatatgaat 2221 ggagcagaaa aagataaaat ggttgatggt agtggaataa gaagattaac tgaagaatat 2281 agatcgaaaa atcaacctca aaattcacct gaaaagactt tatcaacacc aaaacgtcga 2341 cgttatgatg ataatgataa tgatatacag gaaattgaag ataacgataa ctttcaaacg 2401 gttggaaaac gaaatcgaaa aaaaacacga acatcaatta atccaaatga tcataataca 2461 ctagaagata acttagatca agcgccatct aagggttatc aaggacaaaa agtaaatgaa 2521 aaaagaaata acattcgtcg aatcattttc aattctcaat cacagaatgg gaagaaaata 2581 aatgaacaaa gacgaggtga agaaataaat gaaactctag ggaaaagaga taagattaac 2641 aatacacaac aacagactgg agaaataagt ttacattctc attccaatta taatattact 2701 caacatgctt tacaatacgc tgtaagctac caacttcctt cgttaaaaat tacttgtcat 2761 cctggtataa aagaccagat agaatgtaca aatataatta aagctctatc tggatttaac 2821 ctcgaaggaa gaagtggtga agatattaaa cagtggtgtg tttccactaa atggttattt 2881 aattgaagtt actgaatttc tagctccacc taaacttctt atatgttcaa gatgtaattg 2941 cccaggacat ataaaaaaag aatgtaacgg acctttcgat agatgtaaaa ggtgcggtgt 3001 gaacaaagca caaggtgatc atagtcaatg tttaataaag tgtcatcatt gtgaaggtga 3061 tcatattgca tcagattatc gatgtcctgt tattacaaag tttagaggtg aattaattga 3121 tgaattaaga aaaaggcccg atttattacc gcaaaatata caactattta ttccagttga 3181 atttcgaaat ggcggcaaaa actatatcgg gtaccaacag aaagaaaata ttgcttctca 3241 atctcaatct tatctacctt catctcatat taatgtttgg ccgtcactta aacaatcaac 3301 acaacaaaat tacgttaatg aatctaaacc agatatctat gaagatataa tgaaggaaat 3361 aaaatcaata cgaagtgact atgaaaaatt aaaatttgat tttattcaaa gtgaaaagga 3421 attaatgatt aaatatgaaa ataataaaag caaatcaagc acaatgttaa atctattgat 3481 gttacaaaat actcaacaaa atgattgcat ttctaaagta tatactgtgg taaacgaagt 3541 tgtgccaatt attactagtt cattaaaatc attacataca tttattgaaa aaattgtcaa 3601 aagtacagaa gatgtcaatt taaaaaacga atataatatt attcaattta ctattgaaca 3661 aaatctggct atgctgaatg atcgaaatga tcttattatc gaacatcaac gagcaacaac 3721 gatgttaaat gaaaaaacaa atgacatctt ccgtcatggc ttcgatctca tgtcaataaa 3781 tgaacagtaa agtttttcat tattcaccga catgtaaacc tttttccttt tctgttcttg 3841 actcctttac tggaacgcct tgtgaaaaga aaattttaaa ggacatatta ttggaatgga 3901 acactcgtac atctatatca agcatatgcg ttagatggag aaagaagcgg ccggtaaatg 3961 tagctcagaa tatgttatct ctagtctata atgttgaagg actaaataca catataatgg 4021 atatcgatat tcttttgaat aatcatcagc ctcatatatg tattttatct ggagttggag 4081 ctgcagtaag aagactccct tcgtttccag gatataaagg aataactcaa tcaggtagta 4141 actcgttcgg aggagtcgcg atttttcata gagataatct aaagtgtcat gtgattgaaa 4201 gagatgtaaa ctttttagta atagaaatat acattgcagg agaacagata aaaataggag 4261 aaatttatgt tccaccttct tctcctccgc cttttcatct tctcgataaa tataaagatg 4321 aaccatttat ttttttttgg agacttcaat gctaaacatt ctcattggaa ttgcacgaaa 4381 agcaatccta gtggaaatca gctatttaat tggctcgaaa aatcaggtgt tgaagttatt 4441 gctccaaaaa tagcaacatc acggaggtcg aacgccgtga ttgatttcgg cataacgcat 4501 gatgcaagtg gatggaaaaa tgaagtactt gaggaaggta cctcagacca tcgacctata 4561 ttgttccagt catcttattg tattgatgaa ggatctttat ttcgaaaaac aaactggaac 4621 atttttacct tctttttatc aattatattt gagtattgga acacgttagt atataatctc 4681 gatgtaaact cttttattga acttttttct ctctttctat cggccctatg ggatcgatgt 4741 agtgtctatg cgagtgttga gaaatttagg cctccatggc ctccatcatt ggtgttatta 4801 gctagagaag tgaacaaatg tcgtagacgt tatcgtcgtt ctaaaattcc aaatcatctt 4861 gaaaatgttt tgagtgtcaa aaggattttt actgaggaga gatgtcaatt tttacagaaa 4921 caatgtgaga aaaaattaag ttggatgaat gaaaatcaga atatttggaa atatgttaaa 4981 cccatattcc atacttttac atcaccattt agggggttaa cgcttgagaa taataataat 5041 gaaatgaatc cgaataaaat tgttgaaata ttagcagatc attacgaaaa acattttgaa 5101 acgcctagtt ataatagatc taataatgca catagacatt caatgtgcat atatgaggaa 5161 atagcttcaa cacctgattt accactagaa caaataaggt acgaggacgt tctaaaggaa 5221 tggaataaaa tacgaccaaa aaaatctaca gatagtgcag atacatctgc ctttctactt 5281 aaaaagttac ctatacaatt tattactact attaccgtgc tatttaatcg ctgcgcggaa 5341 aaaggtgact tttttcgatc tgcaaagcat gccaaagtag tgtgtatatc taaggaaggt 5401 ttattcccaa ccgttaacaa attacgacca atatctctac taccaaatat agggaaatta 5461 tatgaaagaa tagtccacca gagaatagtt tcttggtgtt atgctaaaaa tatttatatt 5521 gatgaacaga gtggttttac ggcgggtaga agattacaga cgcgcatctt atcgttgatc 5581 gaggacctga ggttaactgt agccgcatgc aaccgtccag ccttagtaat atttgtcgat 5641 tttttaagcg cgttcgataa gatgtggtac ccagcactta ttgcgaatct aaaaacatca 5701 ggaatgccga ctgcactcct caaatggatc tacaattggc ttcaaaatcg tactctctcg 5761 attaacttcg gagaagccta ttctcgtacg attcccatat ttgtcggtgc accacaaggt 5821 tccgtgctgg cggcaacatt gttccgcctg cacgtacatt ttcttccctc ccgcttcctt 5881 gcgttaacat ctcacatgtt cgctgatgac ttagcgattc agatctctgg tgatttagat 5941 aaaaagttct cgaaa //