LOCUS BX005200 8465 bp DNA linear ROD 13-DEC-2012 DEFINITION Mouse DNA sequence from clone RP23-321L9 on chromosome X. ACCESSION BX005200 VERSION BX005200.8 KEYWORDS GAP_CLOSURE; HTG. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 8465) AUTHORS Whitehead S. CONSRTM Genome Reference Consortium JOURNAL Submitted (13-DEC-2012) to the INSDC. Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. E-mail enquiries: grc-help@sanger.ac.uk Clone requests: Geneservice (http://www.geneservice.co.uk/) and BACPAC Resources (http://bacpac.chori.org/) COMMENT -------------- Genome Center Center: Wellcome Trust Sanger Institute Center code: SC Web site: http://www.sanger.ac.uk Contact: grc-help@sanger.ac.uk -------------- This sequence was finished as follows unless otherwise noted: all regions were either double-stranded or sequenced with an alternate chemistry or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by at least one subclone; and the assembly was confirmed by restriction digest, except on the rare occasion of the clone being a YAC. Sequence from the Mouse Genome Sequencing Consortium whole genome shotgun may have been used to confirm this sequence. Sequence data from the whole genome shotgun alone has only been used where it has a phred quality of at least 30. RP23-321L9 is from the RPCI-23 Mouse BAC Library constructed by the group of Pieter de Jong. For further details see http://bacpac.chori.org/ VECTOR: pBACe3.6 FEATURES Location/Qualifiers source 1..8465 /organism="Mus musculus" /chromosome="X" /mol_type="genomic DNA" /clone_lib="RPCI-23" /clone="RP23-321L9" /db_xref="taxon:10090" BASE COUNT 2832 a 1445 c 1475 g 2713 t ORIGIN 1 aagccgttcc tcgccgttat ttttggatag aatattttat cacagcaaca gacatgaaac 61 caggacaaca tgtaaatttg aaaaatgacc agtaagtatt gttaagacac ttggagccag 121 ctgcatctcc ttcttaaaaa ttctgttcta gtgaaaattg aaagcacaaa aaaatattga 181 ttaaaatgga ctctgggctt tgcccgaaga actatgaaat gcttataaaa gataaacaaa 241 aatattccat taaaacagaa caagatatct agttccaaat gaatgttagg tgtccaataa 301 gcctatcttg attgaagtac ttacttttcc tccatttata gatgcacaag attatttgat 361 ctccaattta caactgcact gagaagaaat acattttgct acccaatagc cccagttact 421 tcgttctcat ccatatagtg cataccttcc caacattcct cttcactcca ttcgctccaa 481 attccatcat ctgcacaata tatattgacc ttacatctta caaaaaagca taggtcttca 541 ctttcatttg ctctcctctt caacttcata tcgtttttgt ctgtggcaga ctgaaagcca 601 aggaaaacta tggtgtgttt atttgaactc agtacaacag caatgatttc atctctgctt 661 caaaatgttt tgggacataa aacaacagca ttgagttact acaaaggtcc accactttac 721 actgattttt aaaggcattt tctcccacta cttctctgta tttaacttta tcttttgttc 781 ttttatagat tacttgtaat aagaaacatc atgtgcaata agtcacaact ctacatcatt 841 tagtgtccac aatatccata ttagtgtcag atattctagg ttctataaat gggaaaaagc 901 tatatgggaa ttactgaatg ttgattgcat ggaaaccaaa atattcatct ccaaagtgca 961 tcccctcctc tttttggtct gattaacttt aaagtctcat gtaataacgc tcatgaactg 1021 acacaaaact accacttcat atataagact actacaagat actcagatgt tctcacaggg 1081 atcacaaggg aaaaaaatcc taaagaaatt acttcaggtt tacactttaa agtgctgcag 1141 aggtcttctt atatgtaatt attgcttttt atttatttaa cttatctaca gagccttgaa 1201 aatacatagt atagacttaa gtagactggg aatcagattt tgaatctatt tcaaactgac 1261 tgccaagtca attaaccagc ctgggccatg tctacttaat cagtaagcat ttttctcacc 1321 tatatatgaa ttgagtcatt gaaaactagt agttcacctt ctgtctctac caatttctaa 1381 actggaaata aataaaacaa ggtataccaa ggtggggtaa aagaaatcac catatcattg 1441 aagtttggag tctcacaatg atcactttct ttacaatcct ttcttctcta ggaaatgtct 1501 agtgtacctg aggactctta attttgactt catgattgta cttaaagaag tggtttgtgt 1561 gtgtatgtgt atgtgtatgt gttatgtttg agtcttattg gaagccatgc aatctatttc 1621 aatttccttg agaaatttca tttattaaaa caaattgaaa acaagtgact agactgtatt 1681 agcaacatta aaattggtgt aactacttaa aacttttgtt taaatataca tatatttcct 1741 ttgtccacta gatttggcct tctggaaaat aaactgaaat atttatcatg gtctaactcc 1801 tttttgaaca gcaacagatt ttgattatcc agtatcctat tacattttta aaagttatat 1861 ttatgatttt ggcaaataag tacaatatcc atacctccca ggaaatatcg tcttctcgga 1921 tcacaatttc ataagtgtaa caccttggtg gaatgggtcc tccaggtgtg ctccatttca 1981 ttctaatatc aatggaattc tccacactaa tatgaaggaa ttctggtggc aatggtttaa 2041 ctgaaaagca gaaggaaact atttcaacat gaaagttgat aagttagcag catccttcat 2101 ctaaagcttg ggacactcca taagcaaaac tttcagagac aaactacatg ggtcaagatt 2161 attctcataa tgtgactgaa aaccaaagtt gcttgccaat caaggtggac ttcttgaaaa 2221 aaattgttat ttgagaaacc cacccccact ctctgtctct ctgtctctct ctctgtctat 2281 ctgtctctgt ctgtctgtct gcctgtttct ctctctctct ctctctctct ctctctctct 2341 ctctctctct ctctctctct ctgtgtgtgt gtgtgtgtgt gtgtgtgtct gtgactgtga 2401 gtgtgtgtgt gtgtgtgtgc gtgtgtgtgc gcacgcacgc acgtgtgttg tgtatttgga 2461 gacagagttt ctctgtgtag ccttggctgt cctagaaatt gctttgtaga ccaggctggc 2521 cttggattca agaggtccac ctgcttctgc cttccaagtt ttgaaattaa catgtgccac 2581 catcacccag catgggaaac taatttttgt ttgtttgttt ttgataaagc ctacactgaa 2641 aaatatttaa ggtcaagaga aaaaaataag aagcctaagt cattgcaatc attatcccat 2701 ttttacaact ttagaaacaa ccaaaccact tttactacaa ctactattgt gactgttttc 2761 taagtaacac atacgttgtg gtcactatat atctggcatt gcaccaggtc tgcctgatta 2821 tagaaccttt catacttata actgttagaa ataaaaatac aaattctgaa gaaataaaat 2881 tgtttggttc ccaatcgttt atcattggat gccatgacta atagagtctg tggattgcct 2941 tttgcttctg ggtttgcact accatcgctt tactaaacct cactcttctt ctcttgcatc 3001 ttctgctcac ttagaaatag cctagaggaa aatcagcaag ttttaagttg acttcatttg 3061 ctcatgtcac ctatattttg aagttgaaaa actgtatagc tggatctgat gggttccaac 3121 tttgaagatc cattaacaca gataaaaaaa tctttatagt ctgatgagtc caagttggac 3181 agtttgcatc caacattttt ttcatcatgc tggaggtaat cagcacactg taaggcatga 3241 tccaagccct catacctaca acacaagaag cagtttagga attgtttagt agcatttttt 3301 tttaaatctt ggtgctcagt tttaaatcat gttattatat gaaatgcaca tatgagcaca 3361 gtatattgat tcagtagatt atacatatac ctataaacac acatactcat atatacatat 3421 atatgtacat atacatataa caataattat ttttaaaaga tgtcatgaat ttgagtggaa 3481 ttgagatgtt acaagaccag ttggagggag gagagagagg tagaaatgat gtaaatatgc 3541 tacatatgta caacattctc aaataaatag agaaagttaa gttataaaat ggataacaca 3601 aaaaaaagaa tcatttaaca gcattctatg ctttagtgca cctactattt gctacacgca 3661 ataataagat ctatatattc aacaacagaa aaacaggaat agttaacatc atgtagcttc 3721 agtttattgt taatcttcat aaattctcaa aggaacttaa gtattatcca tctatttact 3781 ttttgatgac taatcaaaat ttgtgaatta aagattgcga atacttaggt agccttagta 3841 gcatttaaca aagaaaacaa tttgagtaga aataagatgt aagagcagat atacaatttt 3901 ctcaagttta ctaaaataaa aagaaatcct ctgatattat agcactatga tatgagcctg 3961 aaaacccatg actagaggaa gaagtaaaag gaacaaagca aagtgcagtg taacctttat 4021 caagtaacat gtagttttcc ctttgcctta agcaagagat tttaccatag catctatcag 4081 tggaaagagg ggcccattgg tcgtgtaaac tttatatgcc tcagtacagg ggaacaccag 4141 ggccaagaag tgggagtggg tgggggagtg tgtgggggac tgttgggata gcattggaaa 4201 tgtaaatgaa ataaatacct aattaaaaaa ataaagttaa ctttgtatgg gtgatatagc 4261 tgggatgaaa gggcttgtta acaactgatt cttaaatcaa taattcctga cttatccccc 4321 ccaaaaaaat attagcttgc aatgtaaaat gtaattttgg ctttaaaagc agccaaaaat 4381 cccttctaaa atgagaccag catagcagct gacaaggagc tagtgaaaat atctaaactc 4441 tactaaatgt agtttatacc aagtgcccta atttagggaa gtgtttaaaa tttttactct 4501 tttggaaagt tgcctgctta cagtgcagga aacttcatat ccatgattga ctttgtttat 4561 tcattattct ttgacataga atttcactat acactatcct gaaacttact atgtagccca 4621 gtggtctggt gtcaaattca tgattgttat acattagcct cccaaattct gggatgacag 4681 gtatacatca atatgcccaa cggttgttta ggtttacaaa aattgactgt gtgactttgt 4741 gtctgtgaaa aatgacatac actctgtgaa atgttaattt ttatttctct ccattttact 4801 aagggaggat aagttatctt aaacatgaag ggacactgtg aagagtggct tcctctcttc 4861 tttgctgttt ttttttaaac tagagcagtg tttctcattt aacaaatgtt taatatttat 4921 tgatttatta ccaaaaattt agaaatgtgt ccattcaatt taagatatgg aaagtgaaac 4981 attcccttaa gaggaaattg tttgctcaag gctccctagc tacatgtttc cagagcaggg 5041 tttagagccc agttctcaaa agcactaatc ctttatgccc aatcatgtat atattgtgtt 5101 tttcttttaa aagatgcaat cagagtgtgg ccttaacgtt cacaaatact atgagcttgg 5161 cttatcttgc tttgtatttc tttggtaaac gtacaatctc tgatttttcc atttatccat 5221 gttgccatcc ttggttttat tcatttaatg attagtatta atctattgtg agtatggcct 5281 tctgtgatta gttaagagaa atgtgagaat tgattcacat ccaccaatct taaaaaaaaa 5341 aaaaacttga ggagacaaaa tatgagataa gtttgagtat catccaaaaa aaaaagcaag 5401 tgctataaaa agttcagtag caaagatgaa cagaaactgg catgatcagc agagtcaatg 5461 aatttagaca tcgcatgggc ctagaaggat gaaaaagaat tggtaaccaa gtgaggcaga 5521 ggccattcca gattgcaaaa tgcacaaaag tcaagacatg gataaggaaa agaaatgtaa 5581 agatggatct atagagtacc atattgatcc tggccatagc aagctatagt tttggaaagg 5641 tagtgataca gtgaggtgaa aacttgaaat gcaacctgat ttgatcctgg gcataatatg 5701 caggtactgg aggtatatgg tcaggagatg gtatataaaa agacaaggaa gacaaaggta 5761 gctccaggat gcagaaatga gcagaaaaga aaaatggtac aatctgagca gccaccattt 5821 gggaggtcat ggcagatgtc caagtgaggg atgaggggag tctaaaggaa gactcttaca 5881 atagagaagg gaaatgaaaa acagatgtgc aacttagcaa aagaatgtca gagtgtggtg 5941 gatgattgta ttaccataaa gcaattaagg aactggctgc tgacgggggg ttatgttttc 6001 actggtccac cacccatgtg ccacatgcat gcccacacaa gccctagttg aattcagctg 6061 aacacaacat gagaattaaa acagaacaaa aagacaagat agtcggatag gacttgttga 6121 gtaggaggaa agaaaataaa ggaggggagg ggtgagtgtg cctagaatgt attaaatgtg 6181 catagaaaat aaaatcttta aaaggttctg tttttaaagc ttcactaaca gttaattaaa 6241 aaacagcaag aagatccact ttgacagatt actgctttat aaaagctaag tgtataaaaa 6301 aatattcaaa cttttaaaac aataaaccca ggtatctgta ggatgaaata cttcatcctg 6361 tacagaaata gtcacggaat accttgctat atgttcaact tgagattccc acataattat 6421 gattaattat catcatacat gtggctctgg ttaagaaaat ggttggaatt caatagagat 6481 atagttgctt gtgctctgta ctaatcctga cagatgtttg cccaatgaaa gattttaagt 6541 ataaaaatac ttaccagaaa aacatggtat agttggtatc agaatatact gtcttgccag 6601 gtttccaaga gcagaccaaa tactgccagt tataatatat acacttcatg tcctgaattt 6661 tagtttccaa acttcctatg aaatgaatga actgtgagta cctgagagac atggtgacag 6721 atcatctatg caatcactat gcaatggtat ttcctttggc tctgctactt catttagcaa 6781 tcagcataat gagaaagatt gcaaaaggaa gttaccagaa atcacttcac tgtgaggagt 6841 ataggcaaac ctgaaaagga ttgagggctt atttactgta gttcatgtca aagtattaaa 6901 ttaattattc taagatgctc tcaagaattg agcaaattcc catccgcatt tactaatata 6961 actccttact gaggacacta ccaataagat gtagacttag tttggttttt gttgttgttg 7021 ttgttgttgt ttattgtttt ttgttttttt tagtttgttg atttaatgag ttaaaaaaat 7081 ataactcact taaactaaga aagattctgt ttatgtctaa ttgtcacagg atttactgtg 7141 cataaagtca tctatatgat tcattcatca taaaggttag ggaacttatt ctctatatgg 7201 attttttctg ataatatcaa atgtgaaaaa gaaacgtctt aaccttcatc tgatatccca 7261 taagaagctt ctatccatgg actttgtact tctgatccat ttgtacaatg ctctgacaaa 7321 tgcgtacgta tctttccttc aatgccttta ttaagatcaa acccatcctt gtaaattaga 7381 ttcctagtaa ttatagtctg tttgataaaa agatgaaaca gtctatttta gaaatacatg 7441 gaacataaca attaatatct aagattcgat atactacccc agatatagtt ctgtcaatag 7501 taacctttgt atatggtatt attcaattag gtcattcaaa acaaaacaga ggacatttag 7561 caaaggaaaa gactctgtga taggaacatg agctcttaat ttggagttaa atggttcatt 7621 ttgagacatg ggtattgcat ggccaaagat ttgtcatttc agatatacta taaaaccttc 7681 aagaatccca taaaataaaa aagtctaaga ggcacctgga gaaaagtgga caatttctaa 7741 gtatttgaaa gatgaaaaaa taatatatta gagagtctta tatttctgta acccagcagt 7801 gtatcttgtc taaaatgttt ttcaataaat attaggcttt aattgctcat taatattccc 7861 cagctgaatt acagagttaa tggtatacca tttgttacag agctccaaat gaacacaata 7921 gttgacttta taaatagcta ataattcaat aagctttcat tgagagcttg tcatccatgt 7981 aaagaacaat gccatgttct gtgatgtgta tgcaaagatt taactttaca ttgaggattt 8041 tgttagaatt atagaaaata atctagtaaa agaagaaaga ataaaataca gcaaaatgca 8101 taaatgttct tcaagttcat atcctctgag ttctagtttt cttgtacttc caagggtaat 8161 cttaatattg aatgaggtca aaatagtgca cagaagctta catggcagct tttcatataa 8221 gaactagaac tgttaaggca cacaaagtaa tggatagtga agtcagtggt cacaaaaaaa 8281 cacctaatga tcagatcact ctgacatcac aaatcaagct ttccttacct tccagctgtc 8341 gctatcaaca tttcggtatt ttaactcata ttctagtgta cagcccttaa atttttctat 8401 aaccacagga ggtttccatt gcaaatagag ataaccaagt aatccaggat ccaatatttc 8461 aaaat //