LOCUS BT004262 1564 bp mRNA linear PLN 14-FEB-2003 DEFINITION Arabidopsis thaliana clone RAFL15-18-B21 (R20806) putative bHLH protein (At1g06170) mRNA, complete cds. ACCESSION BT004262 VERSION BT004262.1 KEYWORDS FLI_CDNA. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1564) AUTHORS Yamada,K., Chan,M.M., Chang,C.H., Dale,J.M., Hsuan,V.W., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C., Toriumi,M., Wong,C., Wu,H.C., Yu,G., Yuan,S., Carninci,P., Chen,H., Cheuk,R., Hayashizaki,Y., Ishida,J., Jones,T., Kamiya,A., Kawai,J., Kim,C.J., Narusaka,M., Nguyen,M., Palm,C.J., Sakurai,T., Satou,M., Seki,M., Shinn,P., Southwick,A., Tripp,M.G., Wu,T., Shinozaki,K., Davis,R.W., Ecker,J.R. and Theologis,A. TITLE Arabidopsis Full Length cDNA Clones JOURNAL Unpublished REFERENCE 2 (bases 1 to 1564) AUTHORS Yamada,K., Chan,M.M., Chang,C.H., Dale,J.M., Hsuan,V.W., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C., Yu,G., Yuan,S., Carninci,P., Chen,H., Cheuk,R., Hayashizaki,Y., Ishida,J., Jones,T., Kamiya,A., Kawai,J., Kim,C.J., Narusaka,M., Nguyen,M., Palm,C.J., Sakurai,T., Satou,M., Seki,M., Shinn,P., Southwick,A., Tripp,M.G., Wu,T., Shinozaki,K., Davis,R.W., Ecker,J.R. and Theologis,A. TITLE Direct Submission JOURNAL Submitted (14-FEB-2003) Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA COMMENT RIKEN Genomic Sciences Center (GSC) members carried out the collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J., Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J., Hayashizaki,Y. and Shinozaki,K. The Salk, Stanford, PGEC (SSP) Consortium members carried out the sequencing and annotation of the RAFL cDNAs: Yamada,K., Chan,M.M., Chang,C.H., Dale,J.M., Hsuan,V.W., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C., Toriumi,M., Wong,C., Wu,H.C., Yu,G., Yuan,S., Chen,H., Cheuk,R., Jones,T., Kim,C.J., Nguyen,M., Palm,C.J., Shinn,P., Southwick,A., Tripp,M.G., Wu,T., Davis,R.W., Ecker,J.R. and Theologis,A. Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC) contributed equally to this work as PIs. Annotation based on July 2002 version of the Arabidopsis genome submitted to Genbank. FEATURES Location/Qualifiers source 1..1564 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /clone="RAFL15-18-B21 (R20806)" /ecotype="Columbia" /note="This clone is in a modified pBluescript vector2 (lambda PS) as a BamHI/XhoI insert." gene 1..1564 /gene="At1g06170" 5'UTR 1..129 /gene="At1g06170" CDS 130..1392 /gene="At1g06170" /experiment="experimental evidence, no additional details recorded" /codon_start=1 /product="putative bHLH protein" /protein_id="AAO42264.1" /translation="MGGGGMFEEIGCFDPNAPAEMTAESSFSPSEPPPTITVIGSNSN SNCSLEDLSAFHLSPQDSSLPASASAYAHQLHINATPNCDHQFQSSMHQTLQDPSYAQ QSNHWDNGYQDFVNLGPNHTTPDLLSLLQLPRSSLPPFANPSIQDIIMTTSSSVAAYD PLFHLNFPLQPPNGSFMGVDQDQTETNQGVNLMYDEENNNLDDGLNRKGRGSKKRKIF PTERERRVHFKDRFGDLKNLIPNPTKNDRASIVGEAIDYIKELLRTIDEFKLLVEKKR VKQRNREGDDVVDENFKAQSEVVEQCLINKKNNALRCSWLKRKSKFTDVDVRIIDDEV TIKIVQKKKINCLLFVSKVVDQLELDLHHVAGAQIGEHHSFLFNAKISEGSSVYASAI ADRVMEVLKKQYMEALSANNGYHCYSSD" 3'UTR 1393..1564 /gene="At1g06170" misc_difference 1500 /gene="At1g06170" /note="not present in genomic sequence" BASE COUNT 491 a 325 c 323 g 425 t ORIGIN 1 ataggcattt caaaaagaga gacagagaga gaaaaagaaa gagttgttaa tgttaagtct 61 cttcttggcg tgaattcgga aaaagttctt cggagaatca tcatcagcca accctttgga 121 ccggttttca tgggaggagg aggcatgttt gaagaaattg ggtgttttga tccaaatgct 181 ccggcagaaa tgactgctga gagcagtttc tctccgtccg agccaccacc gacgatcacg 241 gtcatcggta gcaacagtaa cagcaactgc agtctagaag atctctctgc attccacctc 301 agcccacaag actcttctct acctgcctca gcctcagctt atgctcatca gcttcacatt 361 aatgctactc ctaattgtga tcatcaattc cagagttcaa tgcaccaaac cctccaagat 421 ccatcgtatg cgcaacagtc gaatcattgg gacaatggtt accaagattt tgtgaatttg 481 ggtcctaatc ataccactcc tgacctactc agtctcttgc aattgccaag atcctcactt 541 ccacctttcg caaaccctag cattcaagac attatcatga caacatcttc ctctgtcgcc 601 gcctatgacc cgctcttcca tctgaatttt cctctgcagc ctcctaatgg gagtttcatg 661 ggagtggatc aagatcaaac tgagactaac caaggagtga acttgatgta tgatgaagaa 721 aacaacaacc tcgacgatgg tcttaaccgt aaaggcagag gatcgaaaaa gcgtaaaatt 781 ttccctacag aacgcgagag aagagttcac ttcaaagacc ggtttggtga cttaaagaat 841 ctaattccaa atcccaccaa gaatgataga gcatcaatcg tcggagaagc gatagattac 901 atcaaagagt tgctaaggac gatcgatgag ttcaagctgc tagtggaaaa gaagagagtg 961 aaacagagga acagagaagg agatgatgtt gttgatgaga acttcaaggc tcaaagcgaa 1021 gtagtagaac aatgtttgat caataagaag aacaatgcct tgagatgctc atggctcaag 1081 aggaaatcga aattcactga tgtcgatgta cgtatcatag acgatgaagt taccatcaag 1141 atcgtgcaga agaagaaaat caattgtttg ttgttcgtat ccaaagtcgt tgaccaactt 1201 gagcttgatc ttcaccatgt agctggtgca caaatcggag agcaccacag tttcttgttc 1261 aacgccaaga ttagtgaagg atctagtgtt tatgcaagtg ccatagcaga tagagtaatg 1321 gaagtgttga agaaacaata catggaagct ctttcggcga ataatggtta tcactgttac 1381 tctagtgatt aaagcgtttt catctagctg gcttattact ttgaatatgg ataattaata 1441 atcacattag ttatattttc gtattattgt tcttagcttg tagctatgcc tctgtttttt 1501 actttttcct tgttttggtt taatcacata ttccaatcat atccctcgaa aaaaaaaaaa 1561 aaaa //