LOCUS BC171623 1224 bp mRNA linear VRT 20-NOV-2008 DEFINITION Danio rerio zgc:171550, mRNA (cDNA clone MGC:198350 IMAGE:9039339), complete cds. ACCESSION BC171623 VERSION BC171623.1 KEYWORDS MGC. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1224) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1224) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (12-NOV-2008) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Harvard cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCY Plate: 6 Row: M Column: 1. FEATURES Location/Qualifiers source 1..1224 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /clone="MGC:198350 IMAGE:9039339" /tissue_type="Pooled, Harvard Zebrafish Pool, whole embryo 5 somites, whole embryo 20 hpf, whole embryo 24 hpf, whole embryo 48 hpf, whole adult fish" /clone_lib="NIH_ZGC_37" /lab_host="DH10B" /note="Vector: pCR4-TOPO forward; Clone identification sequence tag: CTAATGTG" gene 1..1224 /gene="zgc:171550" /db_xref="GeneID:559560" /db_xref="ZFIN:ZDB-GENE-080204-31" CDS 56..1123 /gene="zgc:171550" /codon_start=1 /product="zgc:171550" /protein_id="AAI71623.1" /db_xref="GeneID:559560" /db_xref="ZFIN:ZDB-GENE-080204-31" /translation="MSTKESKPNLSHSQVTDVVKRLYGLTASVVRPLPSYDDQNFYVA PSEGGEFVLKVMNSADSENVAVIELQTQSMNFLHQRGLPAQTALPTLTGQLMSLEEFD CGFGTQIYLVRLLTYLPGTTIAKITCSPQILYDVGKMAATLDTVLLQMEHPNTRVLQR ERFIWKLTSIPLLNQYVHVMDGDPVQKIVKGVIEKYQVQVMPKLPLFRECINHGDFND HNLLVKPDGPSKYKISGILDFADMSCGYFIFELAITIMYMMIESPTPLDVGGPVVAGW ESVFPLNEAERDSLYWLVMCRFCQSLVLARYTVIQQPENEEYLMITSRKGLRHLSRLW ELGKDEVERRWFQSAQQFRQI" BASE COUNT 325 a 281 c 306 g 312 t ORIGIN 1 cagtcgctgc aaagctccat gtcactgact ggtttagcaa cattcctcag cagccatgtc 61 cacaaaagaa tcaaagccaa atctcagcca ttcgcaggtt acagacgtcg ttaagcgtct 121 ctatgggttg accgcatctg tcgttcggcc gttgcccagt tatgatgatc aaaacttcta 181 cgtggcaccc agcgagggtg gggaatttgt tttaaaagtc atgaactctg cagacagcga 241 gaacgtcgct gttattgagc tgcagactca atctatgaac tttctacacc aaagaggcct 301 tcctgcgcag accgctttac ccacactgac tggacaactg atgagcttgg aggaatttga 361 ttgtggattt ggcacgcaga tatatttagt ccgcttgcta acgtacctgc ccggcactac 421 catagccaaa atcacctgca gtccgcaaat cttgtatgac gttgggaaaa tggccgccac 481 attggataca gttttactgc aaatggagca tccaaacaca cgtgtccttc agagagaacg 541 tttcatatgg aaactcacca gcattccact cctaaaccag tatgttcatg tgatggatgg 601 ggatcccgtg cagaagatcg tgaaaggcgt tatagagaag taccaggtcc aggtcatgcc 661 aaaactacca ctgtttcgcg agtgtatcaa ccacggagat ttcaatgacc acaacctctt 721 agtgaaacct gacggaccct caaaatacaa gatctctggc attcttgatt ttgcagacat 781 gagctgtggg tatttcattt tcgagctggc catcaccatc atgtacatga tgattgagag 841 tcccactccg ctagatgttg gagggccggt ggtggcagga tgggaaagtg ttttcccact 901 caatgaggca gaaagagact cgctctactg gctggtcatg tgtcggttct gccagtctct 961 ggttctggcc cgttatactg tgatccagca gccggagaat gaggagtatt tgatgatcac 1021 ctccaggaaa ggtctgcggc acctcagccg tctttgggag ctgggtaaag atgaagtgga 1081 aagaagatgg tttcagagtg cacaacagtt cagacaaatt tgactgaaca ctaaagcttt 1141 taaaatatac atgagggatg cagtaatgca ggttgcttaa ggttcggtag gtatcacggt 1201 tttagggtca cgggtttggt atgg //