LOCUS BC171375 3096 bp mRNA linear VRT 20-NOV-2008 DEFINITION Danio rerio si:dkeyp-38g6.2, mRNA (cDNA clone MGC:198102 IMAGE:9039091), complete cds. ACCESSION BC171375 VERSION BC171375.1 KEYWORDS MGC. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 3096) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3096) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (12-NOV-2008) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Harvard cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCY Plate: 6 Row: B Column: 17. FEATURES Location/Qualifiers source 1..3096 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /clone="MGC:198102 IMAGE:9039091" /tissue_type="Pooled, Harvard Zebrafish Pool, whole embryo 5 somites, whole embryo 20 hpf, whole embryo 24 hpf, whole embryo 48 hpf, whole adult fish" /clone_lib="NIH_ZGC_38" /lab_host="DH10B" /note="Vector: pCR4-TOPO reverse; Clone identification sequence tag: CCATAGCG" gene 1..3096 /gene="si:dkeyp-38g6.2" /gene_synonym="fa99a10" /gene_synonym="wu:fa99a10" /db_xref="GeneID:556024" /db_xref="ZFIN:ZDB-GENE-030131-9089" CDS 27..3068 /gene="si:dkeyp-38g6.2" /gene_synonym="fa99a10" /gene_synonym="wu:fa99a10" /codon_start=1 /product="si:dkeyp-38g6.2" /protein_id="AAI71375.1" /db_xref="GeneID:556024" /db_xref="ZFIN:ZDB-GENE-030131-9089" /translation="MSRKYRKKLSRDDIRAVGFDFIEFLDDRETRSTTDRNTLKEIYN EQFRDRDGVRDPNFSSVLFALTRSSRTRVTRSEVFFDKKIRVRQNDQWSRPYRSQQNH ATPHLNDAISRPSTTRVSDPSSVPEPENRVIARRRLAKTIMRQGNSEDMSVFFADKYG VRVSSELQIEDGKIHWCVEGAEVHELKLFVENTGQEAILFTCFSALHYLQYFTLDDSQ RVRKDNPHRLEPNETYEVILRFKSDQIGVYPATLAFEFKENQDTRPFHIVRFIEAQHR SELTAQLGPTEPFRPKRLDTNQPMKWSIDEGFKPESSSQNFLKFVVPLDNYNCPSYTS ALIEVLKGNRSSGKQLQEHQLTLESDLSFNNYMDRFDLLLYLEEDQMRMDIKRYNKKD VSMVRDRDKKLLVLELPGVSENRPSVLRGDHLLLTKSEELQNSNVTKYKGYVHRVELD QVKLGFSKRLLERFIDNMKFSVEFTINRLPLRLQHRAVHMVVQHHLKDVLFPVASRRL NPVSPSALRLFDQKLEKNPEQKTAVCNIVAGTSKPAPYLVFGPPGTGKTVTIVEAIKQ VEKNTGGARILACAPSNSAADQLGEKLITSQHVDARNIYRIYASSRNPKEIPKVLENN SNVEGENIIFPCKEDLMPYKIVVCTLVTAGRLVSGGFPVGHFSHIFVDEAGHAVEPEI VISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLERLMTQNELYQKGDT GFDNRYVTKLLQNYRSHPSILKVPNELFYDNELKACADEISSRQYCTWEHLPKRGFPV IFHGVVGKDERESTSPSFFNTSEIDKIMDYLKKLLLTQAKKGIAKISPKDIGIIAPYR KQVEKIRQAIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVSTVRSSKEHIILDDK FNIGFLKNEKRFNVAVTRAKALLIMVGNPIILRTDEIWGRFMNYCIQERGYTGYDITH LEETDVIAERLLSLNIRQEITVETEESVVQQFLSPPWRHEH" BASE COUNT 935 a 682 c 730 g 749 t ORIGIN 1 ccacaaaaca acgctttcaa agaaccatga gcagaaaata caggaaaaaa ctctctagag 61 atgatattcg cgccgttggc tttgacttta tagaatttct ggatgacaga gagacgagat 121 ccactacaga tagaaacact ctcaaggaga tctacaatga gcaattccga gacagggatg 181 gagtcagaga tccaaacttc tcttcagttc tctttgcttt gacacgttcc agcagaactc 241 gagtcaccag atcagaagtt ttctttgaca aaaaaattcg agtgaggcaa aatgatcaat 301 ggtccagacc ctatcgcagc caacaaaacc atgctacacc ccatcttaat gatgctattt 361 cacgaccatc cactacccgt gtttcagacc catcatcagt tccagagcca gaaaatagag 421 tcatagcaag aagaaggctg gcaaaaacca tcatgcgcca aggaaacagc gaagacatgt 481 ctgtgttttt tgctgataaa tatggtgtaa gggtgtcctc agagctgcaa atagaggatg 541 gcaagattca ttggtgtgtg gaaggggcag aggttcatga gctaaagctg tttgtggaga 601 acacgggtca ggaggccata cttttcacat gtttctctgc tcttcactac ctacagtatt 661 tcactctcga cgacagccag agagtcagaa aggataatcc acaccgtctg gagccaaatg 721 agacatatga agtgatcttg agattcaaat cagatcagat aggagtttat ccagccactc 781 tggcgtttga gttcaaggaa aaccaagaca cccgtccttt ccacattgtg cgctttattg 841 aggcacagca caggtccgag ctcacggcac agctgggtcc tacagaacca ttcagaccta 901 agaggcttga caccaatcaa ccaatgaagt ggagcataga tgagggcttt aaacctgaaa 961 gctcttctca aaacttcctg aaatttgtgg tgccactgga caactacaat tgtccttctt 1021 acacctctgc cttaattgaa gtcctgaaag gcaaccgttc ttctggaaaa cagcttcagg 1081 aacatcagtt aactctggag agtgatttga gttttaataa ctatatggac cgctttgatt 1141 tgcttctgta cctggaggag gatcagatgc gtatggacat caagagatat aacaaaaagg 1201 atgtgtctat ggtgagggat cgagataaaa aactgctggt cttagagctc cctggtgtct 1261 cagagaacag gccttcagtc ctgagaggag atcacctact tcttacaaag agcgaggagc 1321 ttcagaactc aaatgtgacc aaatacaagg gctatgtcca cagagtagaa ctggatcagg 1381 tcaaactggg cttctccaaa aggctgcttg aacgattcat agacaatatg aaattcagtg 1441 tggagtttac aatcaaccgt cttccattga gactgcaaca cagagcagtt catatggtgg 1501 tccagcacca cctcaaagat gtgctgttcc ctgtggcctc aagacgcctg aaccctgtgt 1561 ctccatcggc tctgagactc tttgatcaaa agcttgaaaa gaaccctgaa cagaagactg 1621 cagtgtgcaa cattgtggcc ggtacatcca aaccagcacc atatttggtt tttggacctc 1681 ctggcactgg taaaacagtc acgatagtgg aggccatcaa acaggtggag aagaatacag 1741 gtggtgcccg tattcttgct tgtgctccat ctaacagtgc tgctgatcaa ctgggtgaaa 1801 agttgattac tagtcaacat gttgatgcac ggaacatata cagaatctac gctagctcac 1861 gcaatccaaa agagatccct aaagtactag agaacaacag taatgtggaa ggagaaaata 1921 ttatttttcc atgtaaagag gatctaatgc cctacaagat cgtggtctgc actctggtca 1981 ctgccggcag gctggttagt ggaggctttc ctgtaggcca tttttctcac atctttgtgg 2041 atgaagctgg tcatgctgtg gagccagaga tcgtcatcag tgtggcagga ctgctcaatg 2101 ctgagactgg acagcttgtt ctggctggag accccaaaca actggggcca atcctgagat 2161 ctccctttgc cattaaatat ggactaggtc tttcattgct ggagaggctg atgacacaaa 2221 atgaacttta tcagaagggt gatacagggt tcgacaaccg ttacgtcact aaactgctgc 2281 agaactacag atctcatcca tccattctga aggttcctaa cgagttgttc tatgataatg 2341 aactgaaggc atgtgcagat gagatcagct cccgtcagta ctgcacgtgg gaacacctgc 2401 ctaaaagagg ctttcctgtg attttccatg gagtggttgg aaaggatgag agagagtcaa 2461 ccagcccatc cttttttaac acgtctgaaa tcgacaaaat catggactac ctgaaaaagc 2521 tgctcctgac acaggccaag aaggggattg caaaaatctc ccccaaagat attggcatca 2581 tcgcccccta caggaaacag gtggagaaaa tccggcaggc catcaagatt cacagggaac 2641 ttaaatctct ctcaggcatt gaagagctga aggttggctc tgtggaggag tttcaaggcc 2701 aggagagaaa agtgatcatt gtgtcaaccg ttcgcagcag caaggagcac atcattttgg 2761 atgacaaatt caacatcggg tttctgaaga atgagaagag attcaatgtg gcggtgacaa 2821 gagcaaaagc cctgctgatc atggtgggaa accctattat tctgcggaca gacgaaatct 2881 ggggcaggtt tatgaactac tgcattcagg aaagaggcta cactggatat gatattaccc 2941 atttggaaga aacagatgtg attgctgagc gtttgctcag tcttaacatc agacaggaga 3001 tcactgtgga aaccgaggag agtgtggtcc agcaatttct gagtcctcca tggagacatg 3061 aacattaaaa taaaatgtca ttaaggccca tcccga //