LOCUS BC168928 1399 bp mRNA linear ROD 23-AUG-2008 DEFINITION Rattus norvegicus C1q and tumor necrosis factor related protein 4, mRNA (cDNA clone MGC:189221 IMAGE:8368551), complete cds. ACCESSION BC168928 VERSION BC168928.1 KEYWORDS MGC. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1399) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1399) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (22-AUG-2008) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Howard J. Jacob cDNA Library Preparation: Express Genomics cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 341 Row: l Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 157820194. FEATURES Location/Qualifiers source 1..1399 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /clone="MGC:189221 IMAGE:8368551" /tissue_type="Brain, 15 day embryo pool, mixed sex, strain BN/NHsdMcwi" /clone_lib="NIH_MGC_366" /lab_host="DH10B" /note="Vector: pExpress1" gene 1..1399 /gene="C1qtnf4" /db_xref="GeneID:311184" /db_xref="RGD:1311006" CDS 227..1207 /gene="C1qtnf4" /codon_start=1 /product="C1q and tumor necrosis factor related protein 4" /protein_id="AAI68928.1" /db_xref="GeneID:311184" /db_xref="RGD:1311006" /translation="MLLLLLGFLGPVACWALGRAGPGSSELRSAFSAARTTPLEGTSE MAVTFDKVYVNIGGDFDAATGRFRCRVPGAYFFSFTAGKAPHKSLSVMLVRNRDEVQA LAFDEQRRPGARRAASQSAMLQLDYGDTVWLRLHGAPQYALGAPGATFSGYLVYADAD ADAPARGPAALEPRSAFSAARTRSLVGSDAGPGPRHRPLAFDTELVNIGGDFDAAAGV FRCRLPGAYFFSFTLGKLPRKTLSVKLMKNRDEVQAMIYDDGASRRREMQSQSVMLPL QRGDAVWLLSHDHDGYGAYSNHGKYITFSGFLVYPDLTAASPPALKPPEL" BASE COUNT 222 a 503 c 445 g 229 t ORIGIN 1 cccctgctcc ccgcccttgc gcttctccgc ttcagcttct gctgtccttc ccactcgctc 61 acgcctccct tgccggggtc cccactcgtc gccggctgag ccccccgcca cccccggagg 121 cctggtcaag ccgcagcgtg ggcgaccagt gtgcagcccg gcgtcctcac cgagcaggat 181 cgccggctgg gaccgaagcc gacccgccgg ccgccagcca ggtgccatgc tgctcctcct 241 gctcggcttc ctaggcccgg tggcctgctg ggcactgggc cgggctgggc ctggctcctc 301 ggagctgcgg tcagccttct cggcggctcg caccacccca ctggagggca cgtcggagat 361 ggcggtgacc ttcgacaagg tatacgtgaa catcggaggt gacttcgacg cagccaccgg 421 gaggttccgc tgtcgcgtgc ccggcgccta tttcttctcc ttcacagcgg gcaaggcccc 481 gcataagagc ctgtcggtga tgctggtgcg caaccgcgac gaggtgcagg cgctggcctt 541 cgacgagcag cggcggccgg gcgcacggcg cgccgccagc cagagtgcca tgctgcagct 601 cgactacggc gacacggtgt ggctgcggct gcacggcgcc ccgcagtacg cgctcggcgc 661 gcccggcgcc acctttagcg gctacctggt gtacgcggac gccgatgctg acgcgcctgc 721 gcgcggcccc gcagccctgg agccgcgctc ggccttctcc gcggcgcgca cgcgcagcct 781 ggtgggctcg gacgcgggac ccggaccgcg ccaccggccg ctggccttcg acaccgagct 841 ggtaaacata ggcggcgact tcgacgcggc ggccggcgtg ttccgctgcc gcctaccggg 901 agcctatttc ttctccttca cgctgggcaa gctgccgcgc aagacgctgt cggtgaagct 961 gatgaagaac cgcgacgagg tgcaggccat gatttacgac gatggcgctt cgaggcgccg 1021 tgagatgcag agtcagagcg tgatgctgcc actgcagcgt ggcgatgccg tctggctgct 1081 tagccacgat catgatggct atggcgccta cagcaaccac ggcaagtaca tcactttctc 1141 tggcttcctg gtgtaccctg acctcactgc tgcctccccg ccggccctca agcccccaga 1201 gctctgagcc tctgcttgga ggagcctggg agagccgtgg ggcatgcatg ccgagccggg 1261 accgcggccc gaacgcccca ccggccggag catgactacc tgcccagcac gcctggactc 1321 taccaataaa gtggggctgc ctgtcagcct tatggtcctg ccctgtgtaa aaaaaaaaaa 1381 aaaaaaaaaa aaaaaaaaa //