LOCUS BC162438 1208 bp mRNA linear VRT 12-JUN-2008 DEFINITION Danio rerio vomeronasal 2, receptor, 1, mRNA (cDNA clone MGC:194436 IMAGE:9037605), complete cds. ACCESSION BC162438 VERSION BC162438.1 KEYWORDS MGC. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1208) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1208) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-APR-2008) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Harvard cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCY Plate: 1 Row: D Column: 19. FEATURES Location/Qualifiers source 1..1208 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /clone="MGC:194436 IMAGE:9037605" /tissue_type="Pooled, Harvard Zebrafish Pool, whole embryo 5 somites, whole embryo 20 hpf, whole embryo 24 hpf, whole embryo 48 hpf, whole adult fish" /clone_lib="NIH_ZGC_37" /lab_host="DH10B" /note="Vector: pCR4-TOPO forward; Clone identification sequence tag: CCCGCCTC" gene 1..1208 /gene="v2r1" /db_xref="GeneID:654782" /db_xref="ZFIN:ZDB-GENE-060209-1" CDS 46..1158 /gene="v2r1" /codon_start=1 /product="vomeronasal 2, receptor, 1" /protein_id="AAI62438.1" /db_xref="GeneID:654782" /db_xref="ZFIN:ZDB-GENE-060209-1" /translation="MDGCGGEWLSTPVASSCLENVTMENSSVGRIYEVMLQSTNSTKR NPQFVGVELLQSFKPLIIPCYALVVLVGVFGNYLLLYVICQTKKMHNVTNFFIGNLAF SDMLMCATCVPFTLAYAFNPRGWVFGRFMCYLVFLIQPVTVYVSVFTLTAIGVDRYYA TVHPLKKRISVLACTYLLSGIWILSCGLVAPAVAHTYHVEFKDEGFTICEEFWMGQEK ERLAYAYSTLFITYVLPLSALCISYLCISVKLRNCVVPGHRTQSQAEAQRARKRKTFR LVSLVVAAFGICWLPISVFNVLRDIDIDLIDKRYFLLIQLLCHLCGMSSSCCNPFLYA WLHDRFRAELRKMFTCHRRIGIGIPANNCATASVVL" BASE COUNT 266 a 293 c 298 g 351 t ORIGIN 1 tggcacaact gtcacccttc aggtctctaa aagcagtttt ccaggatgga tggctgtggt 61 ggagaatggc tcagcactcc tgtagcctcg tcttgcctgg aaaacgtcac aatggagaat 121 tccagtgttg ggcgaatcta tgaagtcatg ctgcaatcaa ccaactcgac taaacgcaat 181 ccgcagtttg ttggcgtgga gctccttcag tcttttaaac ctctcatcat cccctgctat 241 gcccttgtgg tcctggtggg agtttttggg aactacctgc tactttatgt catctgccaa 301 accaaaaaaa tgcacaacgt aaccaacttc ttcatcggta acctggcgtt ttctgatatg 361 ctgatgtgtg ccacctgtgt accctttacc ctggcgtatg cgtttaaccc tcgtggctgg 421 gtgtttggaa gattcatgtg ttacttggtg ttcctcattc agcctgtgac ggtgtatgtt 481 tcagtattta cactcacagc catcggcgtg gacagatact acgccacagt tcatcctcta 541 aagaagcgca tttcagttct ggcctgcaca taccttctct cagggatctg gattttgtcc 601 tgtggtctgg tagctcctgc tgtggctcac acataccacg tggagttcaa ggacgaaggt 661 ttcaccatct gcgaggagtt ctggatgggc caggagaaag agcggctggc ctacgcttac 721 agcacgctgt tcatcacata tgtccttcca ctgtccgctc tctgcatctc ttatttgtgc 781 atttcggtga agcttcgtaa ttgcgtggta ccaggccatc ggacccaaag ccaagctgag 841 gcccagagag ctcgcaaacg gaagacattt cgcttggtgt ctctggtcgt cgctgccttt 901 gggatctgct ggctgccaat aagcgtcttt aatgttcttc gggatattga catagatctg 961 attgataagc gctactttct gttgatacag ctgttgtgtc acttgtgtgg aatgagttca 1021 tcttgttgca acccattttt gtatgcatgg ctgcatgatc ggttcagggc agaattacga 1081 aagatgttca cctgtcatcg gcggattggc attgggatac cggcaaacaa ctgtgccacc 1141 gctagcgtgg ttctttgaca gaaaaaagag ggcttagtta gttcaaagac cactaatgct 1201 tgaagaga //