LOCUS BC162274 3189 bp mRNA linear VRT 12-JUN-2008 DEFINITION Danio rerio periostin, osteoblast specific factor, mRNA (cDNA clone MGC:193867 IMAGE:9037755), complete cds. ACCESSION BC162274 VERSION BC162274.1 KEYWORDS MGC. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 3189) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3189) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-APR-2008) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Harvard cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCY Plate: 1 Row: K Column: 1. FEATURES Location/Qualifiers source 1..3189 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /clone="MGC:193867 IMAGE:9037755" /tissue_type="Pooled, Harvard Zebrafish Pool, whole embryo 5 somites, whole embryo 20 hpf, whole embryo 24 hpf, whole embryo 48 hpf, whole adult fish" /clone_lib="NIH_ZGC_38" /lab_host="DH10B" /note="Vector: pCR4-TOPO reverse; Clone identification sequence tag: GCCCACAT" gene 1..3189 /gene="postn" /gene_synonym="fa99h07" /gene_synonym="pn" /gene_synonym="wu:fa99h07" /gene_synonym="wu:fc70f09" /gene_synonym="zgc:153873" /db_xref="GeneID:337176" /db_xref="ZFIN:ZDB-GENE-030131-9120" CDS 68..2416 /gene="postn" /gene_synonym="fa99h07" /gene_synonym="pn" /gene_synonym="wu:fa99h07" /gene_synonym="wu:fc70f09" /gene_synonym="zgc:153873" /codon_start=1 /product="periostin, osteoblast specific factor" /protein_id="AAI62274.1" /db_xref="GeneID:337176" /db_xref="ZFIN:ZDB-GENE-030131-9120" /translation="MKLLFAATFALFVLSAFDQADSSAYDKIVAHSRIRAKKQGPNMC ALQQVVGTKKKYFSTCRNWYQGAICGKTATVLYECCPGYMELAGQRGCPAVAPIDNVF GTLGLVKAKTTQDYSDISKLRQEIEGAGSYTFFAPSNDAWDLLEAEVRNALVSNVNIE LYNALHYHMVNKRLLTKDLKNGMTATSMYNDLSLHINHYSNGVVTVNCARIIHGNQVA TNGVVHVIDRVITAVGSTIQDMIEVEDDLSTLSTVATDSGLIDKLGEPGHFTLFAPTN AAFDKLGREVLDRLMKDKKSLQALLNYHLLNSVQCSEAIMAGTSHETLEGSNIEIGCD GDSLTVNGIKMVLKKDIVATNGVIHLIDEVLMPDSAKQVMELVGQSQATFSDMLTELG LSAAMRPQAEYTLLAPVNAAFNDEVMSMDQSFLKIILENHILKNKIVLSQLYNGQRLE TLSGKFLRVFVYRTALCIENACLIRGSKEGSNGALHLMKTLISPAESSMFQILVKNGA FKIFLSLMEAAGLTDLLKQEGDFTLFAPTDEAFAGLSERDLTLLKSNGNALKAILLYH FSNGVFIGGGLETGVTNLLKTLQGSNLRVLYANASMLVNTVKVPEPDIMATNGVVHFV RTLLYPEDIPVGSQDLLSLLRRIIRYIQFKFVPGYRYQEIPLTFMRRVITVPGDVTKV TRVIQGEPTITKVTRVIEGAPSVTKVTRVIEGQPSITKVTRVIEGQPSLTKVTRVIEG DPSMTRVIEDFGEDSEGITTFIQEGTRRVPPRRVQGGVRRRT" BASE COUNT 888 a 700 c 748 g 853 t ORIGIN 1 aaaagccctc tccccctcag ctcaagccca tttcttgctc tgaagtctca cagaggagaa 61 agcagggatg aagctcctct ttgcagctac ttttgcactc tttgtgctgt ctgcctttga 121 ccaggcagat tcttcagctt atgacaaaat agttgcacac agccgtattc gtgcaaagaa 181 acaaggacca aatatgtgtg ctctccagca agtcgtgggg acaaagaaga aatatttcag 241 tacttgtcgt aattggtacc aaggggccat ttgtggaaag acagcgaccg tgttgtatga 301 gtgttgccca ggttacatgg agctggcagg ccagcgtggc tgtcctgcag ttgctcccat 361 tgacaacgtt tttggaaccc tgggtctagt caaagcaaaa actactcaag actactcaga 421 tatttccaaa ctccggcaag agattgaagg tgcaggatca tacacctttt ttgcacccag 481 taacgatgcc tgggatcttc tcgaagcgga ggtgagaaat gctctggtga gcaatgtgaa 541 tatcgagctg tacaatgctc ttcactacca catggtcaac aagcgtctcc tcactaaaga 601 cctcaagaat ggaatgaccg ctacctctat gtacaacgac ttgagcctgc acatcaatca 661 ttactccaat ggggtagtca cagtgaactg tgccaggatc attcacggca accaggtggc 721 caccaacgga gttgttcatg tcattgaccg cgtcatcaca gcagttggca gcaccattca 781 ggatatgatc gaagtggaag atgatttgag cactttgagc actgtagcta ctgattctgg 841 attgatcgac aagctgggtg agccaggaca cttcacccta tttgccccca ccaatgctgc 901 ctttgacaag ttgggtagag aggttctgga caggctcatg aaagacaaga agtccctcca 961 agctctcctc aactaccatc tgttgaactc tgttcagtgc tctgaggcca tcatggccgg 1021 cacatcacat gaaaccctgg agggcagcaa tattgagatt ggctgtgacg gagacagtct 1081 cacagtcaac ggcatcaaga tggtactcaa gaaggatatt gtcgccacca atggagtcat 1141 tcatctcatc gatgaggtcc tcatgccaga ctctgctaaa caggttatgg agttggttgg 1201 acaatctcag gccaccttca gtgacatgtt gacagagctg ggcttgtctg cagcgatgag 1261 accccaggct gagtacacgc ttctggcccc agtcaatgca gccttcaacg atgaggtgat 1321 gtccatggac cagagcttcc tgaagatcat tctggaaaac cacatcctga agaataaaat 1381 tgtgctgagt cagctataca atggccagcg tctggaaaca ctctcaggga aatttctcag 1441 agtcttcgtc taccgcacag ctctctgcat tgagaatgcg tgcttgatcc gtggcagcaa 1501 agagggaagc aatggtgccc tgcatctcat gaagaccctg atctcgccag cagagtccag 1561 catgttccaa atcctggtga aaaatggtgc cttcaagatc tttttgtcac tgatggaagc 1621 agccggactg acggacttgc tcaaacagga aggagatttc acacttttcg ctcctaccga 1681 tgaagctttc gcagggctca gcgaaagaga cttgactctt ttgaagagta atggaaacgc 1741 cctcaaagcc atcctgcttt atcacttcag taacggagtc ttcattggtg gaggattgga 1801 gaccggagtc acaaacctcc tgaaaactct ccagggcagc aatttgaggg tgttgtatgc 1861 aaacgcgagc atgctggtca acactgtgaa agttcccgag cctgatataa tggccacaaa 1921 tggagtcgtt cactttgtca ggactcttct gtaccccgag gatattcctg ttgggagcca 1981 ggatctcctt tcactcctca gaaggattat ccggtacatc cagtttaagt ttgttcctgg 2041 atacagatat caggagatcc ctctgacgtt tatgagaaga gtcattacag ttccaggtga 2101 tgttacgaaa gtgacccgag ttatccaggg agagcctacc atcaccaaag tgacacgggt 2161 gattgagggt gcaccaagcg ttaccaaggt cactcgtgtg attgagggtc agccttctat 2221 cactaaagtc accagggtga tcgaaggaca gccatccttg accaaggtta cgagagtcat 2281 cgaaggggat ccaagtatga ccagagtcat tgaagatttc ggtgaggact ctgagggaat 2341 cactacattc attcaggagg gaacaagaag agtgcctcca agaagagtgc aaggaggcgt 2401 ccggaggaga acctagaact tgagcagaca cagtgagcac aagcaaaaga aaaaaaaagg 2461 cctgaagagt atttcatata cttccttcat ttacttgcac aatgatccag agcctattag 2521 gttggagttg agtttaagac aaacaaagaa acaacctcat tgctttgttt aagtacattt 2581 agtccaaaca agcatatgaa atttcccatg tgtgtgtaaa tatttgaaac tttttttgga 2641 tttgttctta actgtggctg gaaacagttt gacgtgtaag tgctcttatg tgacaggata 2701 cataaaatat ctgatgtttt tatgctacat caaatcagaa acatttggac aacctttata 2761 tgtggagtat caatactctt taggcatcaa aaaaagtaaa taaatagaga atgttcatac 2821 gaaatacatg gtgcagggaa cagatgcctt aaaccagaaa tacgagtgta tttttctggg 2881 atgcggttta accgttgcat ggacaatgat ttcatggtgc tcatgtttag atggtgtaaa 2941 atctaaaata ctgacaggaa ttaagttttg ttttcaaatc taaaaccttt tctttgtatt 3001 tcttttgtgg tggagagggt tgattgtttt tcattttcac ggttttagtg ttttgtttgt 3061 gtatgtaaag tgtgtctcct tttttgcatt acctgtggac agatgtgctc aatcctttta 3121 tctcaaactg aatgttcact ttaccaattc aaatttaatt tgacttaaac aggttttggc 3181 tcctttgca //