LOCUS BC138417 5332 bp mRNA linear ROD 11-FEB-2009 DEFINITION Mus musculus collagen, type V, alpha 3, mRNA (cDNA clone MGC:170042 IMAGE:8861437), complete cds. ACCESSION BC138417 VERSION BC138417.1 KEYWORDS MGC. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 5332) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5332) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Ambion cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: LLDM Plate: 667 Row: d Column: 11 single stranded. FEATURES Location/Qualifiers source 1..5332 /organism="Mus musculus" /mol_type="mRNA" /db_xref="taxon:10090" /clone="MGC:170042 IMAGE:8861437" /tissue_type="Brain,thymus,testicle,kidney,spleen,liver, heart,lung,ovary,embryo - PCR rescued clones" /clone_lib="NIH_MGC_391" /lab_host="DH10B" /note="Vector: pCR-XL-TOPO; Clone identification sequence tag: TCACTTTC" gene 1..5332 /gene="Col5a3" /db_xref="GeneID:53867" /db_xref="MGI:MGI:1858212" CDS 47..5266 /gene="Col5a3" /codon_start=1 /product="collagen, type V, alpha 3" /protein_id="AAI38418.1" /db_xref="GeneID:53867" /db_xref="MGI:MGI:1858212" /translation="MRSCRRLDQLQAGLCLLLASLQLVSWTLAAEPVDVLEAWGVHRD QAGVAEGPGFCPLRIPQGDRAFRVGKSSLLSVPTWQLFPDGHFPENFSVLLTLRAQPA NQSVLLSIYDEKGVRQLGLALGPALGLLGDSFRPLPKQVNIMDGRWHRVAVSISGNKV TLVVDCEPQPPTFGQGPRFISTAGLTVMGTQDTREESFEGDIQELLLIPDPQAAFQAC ESYLPGCETLDSTTTGAPKDDEPETPAPRRRKGKGKKKGRGRKGKGRKKNKETSELSP TPGAPENQTSLHIPETEKTVPHLPLTPTPLAITTTVTIGQNATVSQGLDSGTETEQTT PEVDSTEEGEGGGPTMGPKFRAAEQSLQTEFQIFPGAGEKGAKGEPATVEQGQQFEGP AGAPGPRGISGPSGPPGPPGFPGDRGLPGPAGLPGIPGIDGARGLPGTVIMMPFHFAS SSMKGPPVSFQQAQAQAVLQQAQLSMKGPPGPVGLTGRPGPVGLPGYPGLKGELGEVG PQGPRGLQGPPGPPGREGKTGRAGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGD FGRVGQPGPPGEDGVKGLQGPPGPTGQAGEPGPRGLIGPRGLPGPLGRPGVTGSDGAP GAKGNVGPPGEPGPPGQQGNHGSQGIPGPQGPIGTPGEKGPPGNPGIPGVPGSEGPPG HPGHEGPTGEKGAQGPPGSAGPRGYPGLRGVKGTSGNRGLQGEKGERGEDGFPGFKGD EGPKGDRGNPGPPGPRGEDGPEGQKGPGGLPGDEGPPGAAGEKGKLGVPGLPGYPGRP GPKGSIGFPGPLGPLGEKGKRGKAGQPGEEGERGTPGTRGDRGQPGATGQPGPKGDVG QNGSPGPPGEKGLPGLQGPPGFPGPKGPPGPQGKDGISGHPGQRGELGFQGLTGPPGP AGVLGPQGKVGDVGPLGERGPPGPPGPPGEQGLPGIEGREGAKGELGPLGSVGKEGPP GPRGFPGPQGAPGDPGPIGLKGDKGPPGPVGANGSPGERGPVGPSGGIGLPGQSGGQG PIGPAGEKGSPGERGTPGPTGKDGIPGPPGLQGPSGAAGPSGEEGDKGEVGMPGHKGS KGDKGDAGPPGPTGIRGPAGHSGLPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPP GLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPPGPSGSEGPPGLPGGVGQPGAVGEKG EPGDAGDAGPPGIPGIPGPKGEIGEKGDSGPSGAAGPPGKKGPPGEDGSKGNMGPTGL PGDLGPPGDPGVPGIDGIPGEKGNAGDIGGPGPPGASGEPGARGLPGKRGSPGRMGPE GREGEKGAKGDAGPDGPPGRTGPIGARGPPGRIGPDGLPGIPGPVGEPGLLGPPGLIG PPGPLGPPGLPGLKGDAGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGLQGD PGLPGPVGSLGHPGPPGVVGPLGQKGSKGSPGSLGPRGDPGPAGPPGPPGSPAEVHGL RRRRSVTDTLEGGLEEVMASLNSLSLELQQLQRPLGTAESPGLMCRELHRDHPHLPDG EYWIDPNQGCARDAFKVFCNFTAGGETCLYPDKKFETVKLASWSREKPGGWYSTFRRG KKFSYVDADGSPVNVVQLTFLKLLSAAAHQRFTYICQNSVAWLDEAAGDHRHSIRFQG TNWEELSFNQTTAATIKVSHDGCRVRKGQAKTLFEFSSSVGFLPLWDVAASDFGQTNQ KFGFELGSICFSS" BASE COUNT 1091 a 1516 c 1824 g 901 t ORIGIN 1 accagtccac atcccccttg gccttggtgc accaggcccc gctgggatga gaagctgccg 61 gagactggat cagcttcagg ccggcctctg cctgctcctg gcctccctgc agctcgtgtc 121 ctggacgctg gctgcagaac ctgtggacgt actggaagcc tggggtgtgc atagagacca 181 ggctggggtg gctgaagggc ctggcttctg ccccctgagg attccacagg gtgaccgagc 241 attcagggtg ggcaagtcca gccttctcag tgtccccacg tggcagctct tcccagatgg 301 gcattttcct gagaactttt ctgtgctgct cacactgagg gcccagccag ccaatcagtc 361 tgtccttctg tctatttatg atgagaaggg tgtccggcag ctggggctgg cactggggcc 421 agctctgggc ctccttggtg actccttcag gcccctcccc aagcaagtca acattatgga 481 tggcaggtgg caccgtgtgg cagtcagcat cagtggtaac aaggtgaccc tggtggttga 541 ctgtgaaccg cagcccccaa catttggtca ggggcctcgg tttataagta cagctggact 601 cactgtgatg ggaacccagg acaccaggga agagtctttt gagggagaca tccaggagct 661 gctgttaatt ccagaccctc aggctgcctt ccaggcctgt gagagctacc tccctggttg 721 tgaaaccctc gattccacaa ccacaggggc ccccaaagac gatgaaccag aaacccctgc 781 ccctcgtcgt cgaaagggca aagggaagaa aaaagggcgg ggtcgaaagg gcaagggaag 841 aaagaaaaac aaggagacct cagagctgag tccgacccct ggtgcccctg agaaccagac 901 ctccctccac atccctgaga cagagaagac agttccccac ctgcctctga ctcccacacc 961 tctggccatc accaccactg tcacgattgg acaaaatgcc acagtctcgc aggggttgga 1021 ctccggtact gaaaccgagc agacgactcc agaggtggac tctactgagg agggtgaagg 1081 aggtggcccc accatgggcc ccaagttccg ggcagcagag cagtccttac agactgagtt 1141 ccagatcttt cctggtgctg gagaaaaggg agcgaaagga gagcctgcga cagtagagca 1201 gggacagcag tttgaggggc ctgcaggagc tccaggaccc cggggaatat ctggtccttc 1261 aggccctcct gggcctccgg gcttccctgg ggaccgtggt ctaccgggtc ctgccggcct 1321 cccaggaatc ccaggcatcg atggagcccg gggcctgccg ggcacagtga ttatgatgcc 1381 gttccatttt gcaagcagct cgatgaaggg acccccagtg tccttccagc aggcccaggc 1441 ccaggcagta ttgcaacagg ctcagctgtc catgaaaggg ccccctggtc cagtagggct 1501 cactgggcgc ccaggccctg tgggcctccc tggatatcca ggtctgaaag gtgaactggg 1561 agaagtgggg ccacagggcc cccgaggatt acagggccct cctgggcctc ctggacggga 1621 aggcaagaca ggccgagctg gagcagatgg ggctcggggg ctcccgggag acacaggacc 1681 taagggtgac aggggctttg atggcctgcc cgggctgcct ggtgagaagg gccaaagggg 1741 tgactttgga cgagtagggc aacctggtcc cccaggagag gatggtgtaa agggcctgca 1801 gggacctcca gggcccactg gccaggctgg agagccgggt ccccgaggtc tgattggccc 1861 cagaggtctc ccaggtcccc taggacgccc gggtgtgaca gggagtgatg gcgcaccagg 1921 ggccaaaggc aacgtgggtc ctcctggaga accaggaccc ccaggacagc aaggaaacca 1981 cggctcccag ggaattccag gcccccaggg gcccattggc actcccgggg aaaagggtcc 2041 ccctggaaac cccggaattc caggtgtccc aggatctgag ggccccccgg gccacccagg 2101 ccacgagggt cccacaggag aaaaaggggc tcagggccca ccaggatcag caggccctcg 2161 gggctatcct ggacttcgtg gtgtgaaggg tacctctggt aaccggggtc tccaaggcga 2221 gaaaggagaa aggggagagg atggctttcc tggcttcaag ggtgatgagg gaccaaaagg 2281 cgaccgggga aaccccggac ccccaggtcc cagaggagag gatggtccag aaggacaaaa 2341 ggggcctggg ggactgcctg gtgatgaggg tcctccagga gcagcagggg agaagggcaa 2401 gcttggggtg ccaggtctcc caggttatcc aggacgccca ggacctaagg gatctattgg 2461 atttcctgga cccttgggac cactggggga gaaaggcaag cggggcaaag caggacagcc 2521 aggagaggaa ggagaacgcg gcacaccggg cacccgagga gacaggggac agccgggggc 2581 cacaggccag cctggcccca agggtgacgt gggccagaat gggtctcctg ggccccctgg 2641 agaaaagggt ctacccggtc ttcaaggccc accaggattc cccggaccaa aaggcccccc 2701 gggtcctcag gggaaagatg ggatatctgg gcaccctgga caaagaggag aattgggctt 2761 ccaaggtctg acaggccccc ctggaccagc tggcgtcctt ggtcctcagg gaaaggtagg 2821 ggacgtgggg cctctaggcg agagaggccc cccagggcct cctggacctc ctggtgaaca 2881 aggtctgcca ggcatagaag gcagagaagg ggccaagggt gagctaggac ccctggggtc 2941 cgtcgggaag gaggggccac ctgggcccag gggcttccct ggcccccaag gagcccccgg 3001 agacccagga cccattggtt tgaagggtga caaaggtccc ccaggccctg ttggggcaaa 3061 tggctccccg ggagagcgtg gtcctgtagg cccctctggt ggcattgggc ttcctggcca 3121 gagtggaggg caaggcccta ttggtcctgc tggcgagaag gggtccccgg gagaacgggg 3181 tactcctggt cctactggca aagatggtat tccaggaccc ccggggcttc agggcccctc 3241 tggagctgcg gggccttctg gggaagaagg agacaagggg gaagtaggga tgcctggtca 3301 caaaggaagc aaaggggata aaggagatgc aggcccacct ggaccaacag gaataagagg 3361 tccagcaggc cattcaggcc tcccgggtgc tgatggcgct cagggtcgcc ggggaccccc 3421 tggcctcttc gggcagaagg gggatgacgg agttcgaggc tttgtaggtg taattggtcc 3481 tccaggtctg caggggctgc cgggtcctcc gggggagaag ggcgaggttg gagacgtagg 3541 atccatgggt ccacatggag ctccaggccc tcggggtccc cctgggccca gtggatcaga 3601 gggcccccca ggtctgcctg gaggagtagg acagcctggt gctgtgggcg agaagggtga 3661 gccaggggat gctggagacg ccggaccccc aggaattccc ggcatccctg ggcccaaagg 3721 tgaaattggt gaaaaggggg attcgggtcc atcaggggct gctggtcccc caggcaagaa 3781 aggaccccca ggagaggacg gctctaaggg gaacatgggt cccacaggac tccctggaga 3841 tctagggccc ccaggagacc ctggagttcc gggtattgat ggcatcccag gggagaaggg 3901 aaatgctggt gatattgggg gaccggggcc acctggagct tccggggaac ctggtgcccg 3961 tggcctccct ggcaagaggg gttcccctgg ccgcatgggt ccagaaggaa gagagggcga 4021 gaaaggcgcc aagggagatg ctggtcctga tggaccccca ggcaggacag gccccattgg 4081 ggctcgaggg ccccctggac gaattgggcc tgatggtctt ccagggatcc ctggtcctgt 4141 gggtgaacca ggtctcctgg gacctcctgg gctaatcggc cctccagggc ccctgggccc 4201 acctggcctc cctggcctga agggagatgc tggccccaag ggggagaagg gccacattgg 4261 gctaataggc ctcattggtc ccccagggga ggccggtgag aaaggcgatc aggggttgcc 4321 aggtgtgcag ggccccccag gccttcaggg agaccctggt ctccctggtc ctgttggctc 4381 gttaggtcac cctgggcccc caggtgtggt gggccctctg ggacagaagg gctccaaagg 4441 gtccccggga tctcttggtc ctcgtggaga ccctggacca gcgggtcctc ctggtccccc 4501 gggttctccg gctgaggtgc atggcctgcg caggcgccga tctgtgacgg acaccctgga 4561 aggtggcctg gaggaggtga tggcctcact gaattcactg agcttggagc tgcagcagtt 4621 gcagagacct ctgggcacag ccgagagccc aggcctcatg tgccgagagc ttcaccgcga 4681 ccacccacac ctgcccgatg gagagtactg gattgacccc aatcagggct gtgcacgtga 4741 cgccttcaag gttttctgca acttcacggc aggaggtgag acctgtctct atccagacaa 4801 gaagtttgag acggtgaaac tggcctcgtg gtcccgagag aagcctggag gctggtacag 4861 caccttccgc cgagggaaga agttctccta tgtggatgct gatggctccc cggtgaatgt 4921 ggtccagttg accttcctga agttgttgag tgctgcagcc catcagaggt tcacttacat 4981 ctgccagaac tcggtggcat ggctggatga agctgcgggt gaccacaggc actccatccg 5041 cttccaaggg accaactggg aagagttgtc cttcaaccag acaacagcag ctaccatcaa 5101 ggtctcccat gatggctgtc gggtccggaa gggacaggcg aagaccctct ttgaattcag 5161 ctcttctgtg ggtttcctgc ctctgtggga tgtggctgcc tctgactttg gtcagacgaa 5221 ccaaaagttt gggtttgaac tcggctccat ctgctttagc agctgaagtt gtgaggtggg 5281 aaggaagctg aagggagccc cacatgggct ccttggtgct gaggctctga gg //