LOCUS BC138025 7245 bp mRNA linear ROD 12-MAY-2008 DEFINITION Mus musculus tubby like protein 4, mRNA (cDNA clone MGC:169649 IMAGE:8861044), complete cds. ACCESSION BC138025 VERSION BC138025.1 KEYWORDS MGC. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 7245) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 7245) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Ambion cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: LLDM Plate: 666 Row: d Column: 2. FEATURES Location/Qualifiers source 1..7245 /organism="Mus musculus" /mol_type="mRNA" /db_xref="taxon:10090" /clone="MGC:169649 IMAGE:8861044" /tissue_type="Brain, PCR rescued clones" /clone_lib="NIH_MGC_380" /lab_host="DH10B" /note="Vector: pCR-XL-TOPO with reversed insert; Clone identification sequence tag: GAGCGATC" gene 1..7245 /gene="Tulp4" /gene_synonym="Tusp" /db_xref="GeneID:68842" /db_xref="MGI:MGI:1916092" CDS 93..4736 /gene="Tulp4" /gene_synonym="Tusp" /codon_start=1 /product="tubby like protein 4" /protein_id="AAI38026.1" /db_xref="GeneID:68842" /db_xref="MGI:MGI:1916092" /translation="MYAAVEHGPVLCSDSNILCLSWKGRVPKSEKEKPVCRRRYYEEG WLATGNGRGVVGVTFTSSHCRRDRSTPQRINFNLRGHNSEVVLVRWNEPYQKLATCDA DGGIFVWIQYEGRWSVELVNDRGAQVSDFTWSHDGTQALISYRDGFVLVGSVSGQRHW SSEINLESQITCGIWTPDDQQVLFGTADGQVIVMDCHGRMLAHVLLHESDGILSMSWN YPIFLVEDSSESDTDSDDYSPPQDGPAAYPIPVQNTKPLLTVSFTSGDISLMNNYDDL SPTVIRSGLKEVVAQWCTQGDLLAVAGMEQQAQLSELPNGPLLKSAMVKFYNVRGEHI FTLDTLVQRPIISICWGHRDSRLLMASGPALYVVRVEHRVSSLQLLCQQAIASTLRED KDVNKLTLPPRLCSYLSTAFIPTIKPPIPDPNNMRDFVSYPSAGNERLHCTMKRTEDD PEVGGPCYTLYLEYLGGLVPILKGRRISKLRPEFVIMDPRTDSKSDEIYGNSLISTVI DSCNCSDSSDIELSDDWAAKKSPKISRSSKSPKLPRISIEARKSPKLPRAAQEISRSP RLPMRKPSMGSPSLTRREFPFEDITQHNYLAQVTSNIWGTKFKIVGLAAFLPTNLGAV IYKTSLLHLQPRQMTIYLPEVRKISMDYINLPVFNPNVFSEDEDDLPVTGASGVPENN PPCTVNIPIAPIHSSAQALSPTQSIGLVQSLLANQNVQLDVLTNQTTAVGSAEHAGDA ATQYPVSSRYSNPGQVIFGGVEMGRIIQNPPQLPLPPPPPPPPQAPMQLSAVDHGDRD HEHLQKSAKALRPVPQLAAEGDAVVFSAPQEVQVAKMNPPPPYPGTIPAAPTTAAPPP PLPPPQPPVDVCLKKGDFSLYPTAAHYQPPLGYERITTFDSSGNVEEVCRPRTRMLCS QNTYTLPGPGSSATLRLTATEKKVPQPCTSATLNRLTVPRYSIPTGDPPPYPEIASQL AQGRSAAQRLDNSLIHATLRRNNREVALKMAQLADSSRAPLQPLAKPKGGAAGAVAQL PARPPPALYTCSQCSGAGPSSQSGAALAHAISTSPLASQSSYNLLSPPDTSRDRTDYV NSAFTEDEALSQHCQLEKPLRHPPLPEAAVTMKRPPPYQWDPMLGEDVWVPQERTAQP TVPNPLKLSPLMLGQGQHLDVARVPFVPPKSPSSPTATFPTGYGMGMPYPGSYNNPSL PGVQAPCSPKDALSQAQFAQQESAVVLQPAYPPSLSYCTLPPTYPGSSTCSSVQLPPI ALHPWNSYSTCPPMQNTQGTLPPKPHLVVEKPLVSPPPAELQSHMGTEVMVETADNFQ EVLSLTESPVPQRTEKFGKKNRKRLDSRAEEGSVQAITEGKVKKDARTLSDFNSLISS PRLGREKKKVKSQKDQLKSKKLNKTNEFQDSSESEPELFISGDELMNQSQGSKKGWKS KRSLRTASELEEFKCRKASEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVT QESAKNFQIELEGRQVMQFGRIDGNAYILDFQYPFSAVQAFAVALANVTQRLK" BASE COUNT 1828 a 1864 c 1764 g 1789 t ORIGIN 1 caacggaacc caaccacaaa aataagccaa taaaagaact tggtttgaaa ttcctcagta 61 cttttaaagt gaaatacttc attgaaaaaa gtatgtatgc agcagtggaa catgggcctg 121 tgctttgcag cgattccaac atcctctgcc tgtcctggaa ggggcgtgtt cccaagagtg 181 agaaggagaa acctgtgtgc agaaggcgct actatgaaga gggatggttg gccacaggca 241 atgggcgagg tgtggtggga gtgactttca cctcgagtca ctgtcgcaga gataggagta 301 caccacagag aataaacttc aacctgcgag gccacaacag tgaggttgtg ctggtgagat 361 ggaatgagcc ataccagaaa ctggccacat gtgatgcaga cggaggaatc tttgtgtgga 421 ttcaatatga aggcaggtgg tctgtggaac tggtcaatga ccgtggggct caggtgagtg 481 atttcacgtg gagccatgat gggactcaag ctctcatttc atatcgagat gggtttgtcc 541 tggttggttc tgtcagtgga caaagacact ggtcatctga aatcaacctg gagagccaga 601 tcacctgtgg tatatggact cccgatgacc agcaggtgtt gtttggcaca gcagatgggc 661 aggtgatcgt catggactgc cacggcagaa tgctagccca tgtcctcctg catgaatctg 721 atggcatcct cagcatgtcc tggaattacc ccatcttcct ggtggaggac agcagtgaga 781 gtgacactga ctcggatgat tattctcctc cccaagatgg gcctgcggct taccccatcc 841 ctgtgcagaa caccaagccg ctgctcaccg tcagcttcac ctccggagac atcagcttaa 901 tgaacaacta tgacgacttg tctcccactg tcatccgttc agggctgaaa gaggtggtgg 961 cccagtggtg tacgcaggga gacttactgg cagttgctgg gatggagcag caggcacagc 1021 tcagcgaact gcccaatggt cctcttctga agagtgccat ggtcaagttc tacaatgtta 1081 gaggagagca cattttcact ctggatacac ttgtacagcg ccctatcatc tctatctgtt 1141 ggggccatcg ggactctagg ctgcttatgg cttcaggacc agccctgtat gtggttcgtg 1201 tggaacaccg agtgtccagt ctccagctgt tgtgccaaca ggccatcgcc agcactcttc 1261 gagaagacaa ggatgttaac aagctgacct tgccccctcg tctctgttcc tacctctcca 1321 ctgccttcat tcccactatt aagcccccga ttccagaccc caacaacatg cgagactttg 1381 tcagctaccc ctcagcgggc aatgaacggc tgcactgcac catgaagcgc acagaggatg 1441 acccagaggt cggcgggccc tgctacacac tctacttgga gtacctggga gggctcgtgc 1501 ccattctcaa ggggaggcgc atcagcaaac tgcggccaga gtttgtcatt atggaccctc 1561 ggacagacag caaatcagat gagatctatg ggaacagctt aatttctact gtgattgaca 1621 gctgcaactg ctcagactcc agtgatatcg aactgagtga tgattgggct gccaagaagt 1681 ctcccaaaat ctccagatct agcaaatcgc ccaaactccc aaggatcagc attgaggccc 1741 gaaagtcacc caagcttcca cgggctgctc aagagatttc tcggtctccc cgattgccca 1801 tgcgcaagcc ctccatgggc tcgcccagcc tgacacggag agagtttcct tttgaagaca 1861 tcactcagca caactatctt gctcaggtca catccaatat ctggggaacc aagtttaaga 1921 ttgtgggctt ggctgcattc ctaccaacca acctcggtgc agtaatctat aaaaccagcc 1981 tgctgcatct ccagcctcgg cagatgacca tttatctccc ggaagttagg aagatttcca 2041 tggactatat taacctgcct gtcttcaacc caaacgtttt cagtgaagat gaggatgact 2101 taccagttac aggagcatca ggtgtccctg aaaacaaccc gccctgtaca gtgaacatcc 2161 ctattgcacc aatccacagc tctgctcaag ctctgtctcc cacccagagc atagggctgg 2221 tgcagtccct gctggccaat caaaatgtgc agttggatgt cttaaccaat cagacaacag 2281 ctgtagggtc agcagagcat gcaggtgatg ctgctaccca gtacccagtc tccagtcggt 2341 actccaatcc tggacaggtg atttttggag gtgtagaaat gggccgcatc attcagaatc 2401 ctcctcaatt gcctttgcca ccaccgccac caccaccacc acaggcgcct atgcagctgt 2461 ctgcggtgga ccatggagat cgggaccatg agcacctgca gaagtcagcc aaggccctgc 2521 gcccagtgcc tcagctggct gccgaggggg atgcggtagt tttcagtgcc ccgcaggagg 2581 tccaggtggc gaagatgaat cccccacccc cgtatccagg aactatccct gctgccccca 2641 ccacggctgc acccccaccc cctctgccac caccacagcc cccagtggat gtgtgtttga 2701 agaagggtga cttctcactg taccctacag cagcacatta ccagcctcca ctaggctatg 2761 agaggattac cacctttgac agcagtggca atgtggaaga ggtgtgccgg cctcggactc 2821 ggatgctctg ttcccagaac acctacactc tccctggccc aggcagttct gccaccttga 2881 gactcacagc cactgagaag aaggtccccc aaccctgcac cagtgcgact ctgaaccgac 2941 taactgtccc tcgatactcc atccccacag gggacccacc tccttaccct gaaattgcta 3001 gccagctggc ccaggggcgg agtgccgctc aaaggctgga caacagtctc atccatgcca 3061 ccctacgaag gaacaaccga gaggtggcac ttaagatggc ccagctggca gacagctccc 3121 gtgccccact gcagccccta gccaagccta aggggggtgc tgctggggca gtggcacagc 3181 tcccagcaag acctccacct gccctataca cctgcagcca gtgcagtgga gcagggccca 3241 gctcccagtc aggtgcagcc ctggcccatg ctatcagcac ctccccactg gcctcccagt 3301 cctcctataa tcttctaagc cctcctgaca cctcccgtga tcgtactgac tatgtcaact 3361 cagccttcac cgaggatgag gccctgtctc agcactgtca gctcgagaag cctctgaggc 3421 accccccact tcctgaagct gctgtcacca tgaagcgacc tcccccttac cagtgggacc 3481 ccatgctggg tgaggacgtt tgggttcccc aggaaaggac agcacaacct acagtgccca 3541 accccttaaa actgtccccc ctcatgctag ggcaaggcca gcacctggat gtggctcgag 3601 tgccctttgt gcctcccaag tctccgtcca gccctactgc caccttcccg acaggctatg 3661 ggatgggaat gccatatcca ggcagctata acaacccctc tttgcctgga gtacaagctc 3721 catgctcccc taaggatgcc ctgtcccagg cacagtttgc acaacaggag tctgctgtgg 3781 tacttcagcc agcataccca cccagccttt cctactgcac cttgcccccc acatacccag 3841 gaagcagcac ctgctccagt gtacagctgc cgcccatcgc cttgcaccct tggaactcct 3901 acagcacctg cccgcccatg cagaacaccc agggcactct tccccccaag ccccacttag 3961 tggtggagaa gcctcttgtg tcccctccac ctgccgagct ccaaagccac atgggcacag 4021 aggtgatggt agagactgca gacaatttcc aagaagtcct ctctctgaca gaaagccctg 4081 taccgcagag aacggaaaaa ttcggaaaga agaaccggaa gcgcctggat agccgagcag 4141 aggaaggaag tgttcaggcc atcactgagg gcaaagtgaa aaaggatgct aggactttga 4201 gtgactttaa ttctctcatc tccagccccc gcctagggag agagaagaag aaagtgaaaa 4261 gtcagaaaga ccaactgaag tcaaagaagt tgaacaagac aaacgagttc caggacagct 4321 cagagagtga gcccgagctg ttcatcagcg gggatgagct gatgaaccaa agccagggca 4381 gcaagaaggg gtggaaaagc aagaggagcc tgcggaccgc cagtgagctg gaggaattca 4441 agtgccgcaa agccagtgag aaggaagatg ggcggctggg cagccagggc ttcgtgtacg 4501 tgatggccaa caagcagcca ctgtggaacg aagccacaca ggtgtaccag ctggacttcg 4561 gaggaagggt gacccaggag tctgccaaga atttccagat tgagttggaa ggacgacagg 4621 tgatgcagtt tggacggatt gatggcaacg catacatcct agacttccag taccccttct 4681 cagctgttca ggcttttgct gttgccctgg ccaatgtgac tcagcgccta aaatgaagag 4741 acagatgcag gagtagacat ggcaggagcc tttggaggcg gagctcatac tgctactacc 4801 tgagaagaac aggggaagcc agcaggccag gagggtgctg gtctgtaggc atggcccggt 4861 cgttcactta gcctttattg tctcttttct tttgctagag tggtgtttgg aagtgaagaa 4921 tttgaggtac cttgtgttct tgaaggcggt gtagcttggc tatagagtgt actgcattta 4981 cttctcatgg ccaggaccaa gggcctttgc agagaagata ggttgctcgg ccttgctctt 5041 cttttaaaca tagggagtgt tagtgttcgt tcttcatgtc atctgccctt tattccaaca 5101 ttcactcatg aaaaaaaaat tttttaaaca caaccaaaac tctggaagag tcagcttgta 5161 ctgggttgtg gaggacagca tttcattcac agatgtgtgc tgctcactaa aaggtacctg 5221 gatgaatgag ggatacatat gcaaatgcct tgtgctctgc ttaggtaaac caccatagat 5281 gggtactgcc accattgtca acgtgatttg ataggcagtg tgtgagggaa gagagactgc 5341 ccatggacac aggctcacat gcagacagac aactggatga gctgatagtg tggctcatgc 5401 aagggtgatt ttccaaggat ggtagttgga aaccccactg gtttcttgtg tcagaagtaa 5461 tcctatctga ctttgaaaga aggtaagaga cttcagtcag tgggccgatc caggctgggg 5521 tggagctggg tttacatcat agtcattaga ctgctcactc accagatacc tccctccact 5581 tgtcaagaac ctgccttggc tctccttccc cctttgtttg actctggagc attttactgt 5641 agacgtcttt ctctttagat cctattgctc tgtcttttct aaaccgtgaa tgagacttga 5701 tttgcaacta cacctttcct tcccttgtcc acattaaaat tcagttgttt tgaatgcttt 5761 ccagcagtta taagtgtaat caaaaatatg tgtgcatttc ctagcatact aaaagataga 5821 gccatagtca catctttggg gaaaacacca caatatgctg taagggggaa aaaaaactgt 5881 ttttgggtgc atagactgta ctaaaagatt gaccacaact atgggagagc cttgttaaga 5941 ctgtctgtgc tttattcatt ctgcctgtag catgtttgca aaattttttc tcgtgggaac 6001 acacacaccc aggaaaacac ccagaccttg ggagtaaggc ccagttctcg ctgtcgctgc 6061 aacctgtgct gcttgttccc agagcgcaag agctttaact tttgacttgg gtcttatttg 6121 aaagctgaca agtggaagat gctaaggaaa ttcttttcac cttaaatgtt gatttagttt 6181 cctcctcttt ttcctcttcc tcctcctcct tgtgtttggt ttaaaaataa tgaaagaaac 6241 tgtctgattc ctttagctga gaaaaattaa attactcatc attttttcct agattccaag 6301 gaactatgga caagaacatc tcccagctga tagtggggtt ttccatttta taatttaaaa 6361 tatgagagct gattcttagg tgggccagtt gtctcggaac aagttgagca gtatgttcag 6421 agttagtgtg tttacgtaag tccctgtagc ttgataaggc atccagtgct tagcattagc 6481 tgtgcaatac tgttgtcgcc tctctgtgta tggaataatt taaatgcagt tttctttgtt 6541 ttgttgtcta agagatagtt atttatcttg ctctttatag tattcttggg aactattttg 6601 ttattatgta ttggtgattt atgcccattt tattatttat ttagaaaaat agtacctttg 6661 taatgccttg tttggtggca atatattttg ctgcaaaaaa taaagagaat atgacagaag 6721 gtttttgtgg gggacgggga ggctaggtgc tttgcaactt tcttgagagt tggagaaaat 6781 cttattgatc ccctaaaaaa actaaattca ctctttatct cagtattgat tatatgcaaa 6841 ataggcaata tctttgagat agcataccct aagacagtat ttcttatttt gaaaatgtta 6901 atttaaaata aaatgtgata agacacagga agggcaagac atctgagata agagtctcaa 6961 aagagtccct tagtaaatga tcttcaagtt ttaggggttt ttttttttgt tgttgtttgt 7021 tttgtttgtt tgttttgttt tttttagtta aaatttacct tttccagact gcaaaagtta 7081 tacttacaac tttgctaaat aagaacatcc ctaaaagata ctctttgtct gtggagatgc 7141 aggcttctgg ccttgagttg cttgacctgt gagctgcagg aacagcagcc actcaccagc 7201 ctcctccccc aggcagagag tgagtctcag gttccacatg ggcag //