LOCUS BC129838 2370 bp mRNA linear ROD 02-JAN-2007 DEFINITION Mus musculus protocadherin beta 12, mRNA (cDNA clone MGC:149982 IMAGE:40059393), complete cds. ACCESSION BC129838 VERSION BC129838.1 KEYWORDS MGC. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2370) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2370) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (22-DEC-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCG Plate: 11 Row: g Column: 1. FEATURES Location/Qualifiers source 1..2370 /organism="Mus musculus" /mol_type="mRNA" /db_xref="taxon:10090" /clone="MGC:149982 IMAGE:40059393" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_285" /note="Vector: pCR-Blunt II-TOPO with reversed insert; Clone identification sequence tag: TGTCCAAT sequenced from the reverse primer" gene 1..2370 /gene="Pcdhb12" /gene_synonym="Pcdhb5F" /gene_synonym="PcdhbL" /db_xref="GeneID:93883" /db_xref="MGI:MGI:2136747" CDS 1..2370 /gene="Pcdhb12" /gene_synonym="Pcdhb5F" /gene_synonym="PcdhbL" /codon_start=1 /product="protocadherin beta 12" /protein_id="AAI29839.1" /db_xref="GeneID:93883" /db_xref="MGI:MGI:2136747" /translation="MPGQRQVFFLTILLLFWKSDSEAIRYSMPEEKESGYLVANVAKD LGLRVEELATRGAQIHYRGNKELLQMDAETGNLFLKEKLDREALCGATEPCVLHFQII LENPVQFFQTELQLTDINDHSPEFSDTEMLLTIPENAQPGTVFPLKAAHDSDIGSNAV QNYTVNPNIHFHVVTLSRSDGRKYPELVLDRALDREEQPELTLTLTALDGGSPPRSGT TEVHIEVVDINDNAPQFIQSLYEVQVPENSPLNALVVMVSATDLDAGIYGNVAYSLFQ GDGLSQPFVIDKITGEIRLTKELDFEVSHHYTIEIAATDGGGLSGKCTVVIQVLDVND NAPELAIRKLTVPVPENSAETVVAVFSVSDSDSGDNGRIVCSIQNNIPFLLKPTFENY YTLVTEGPLDRESRAEYNITITVWDLGTPRLTTQHTITVQVADINDNAPAFTQTSYTL FVQENNSPALHIGTISATDSDSGSNAHITYSLLPPHDSQLALASLVSINSDNGQLFAL RAMDYEMLQAFELHVDATDGGSPALSSQALVRVVVLDDNDNSPFVLYPMQNASAPCTE LLPRAAEPGYLITKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLLSE RDAPKHKLLLLVKDNGDPPRSASVTLHVLVVDGFSQPYLPLPEVARDSTQDDYDVLTL YLVVALASVSSLFLLSVLLFVGVRLCRRARAASLGDYSVPEGHFPSHLVDVSRAGTLS QSYQYEVCLNGGTGTNEFNFLKPLFPILPTQAAAEERENAVVRNSVEFY" BASE COUNT 584 a 619 c 607 g 560 t ORIGIN 1 atgccagggc aaaggcaagt cttttttctt actatattgt tgctgttttg gaagtctgac 61 tctgaggcaa ttagatattc catgccagaa gaaaaggaga gtggctattt ggtggcaaac 121 gtggcaaaag atctggggct cagggttgaa gaactggcca ctagaggagc tcaaatccat 181 tacagaggaa acaaagagct cttgcagatg gatgcagaga ctgggaattt gttcttaaag 241 gaaaaactag accgggaggc actgtgtggg gcgacagaac cctgtgtgct gcacttccag 301 atcatactgg aaaaccctgt gcagttcttc caaactgaac tgcagctcac tgatataaac 361 gaccactctc cggagttctc tgacacggaa atgcttctaa caattcctga gaacgcccag 421 ccagggactg tgtttcctct gaaggcagct catgactctg acatagggag caatgccgtt 481 cagaactaca cagtcaatcc caacatccat ttccatgtgg ttactctcag tcgctcagat 541 ggcaggaaat acccagagct ggtgctggac agagccctgg acagggagga gcagcctgag 601 ctcactttaa ccctcactgc tcttgatggc ggatccccac ccaggtcagg aaccaccgaa 661 gttcacattg aagtcgtgga catcaatgat aacgcccccc agtttataca gtcactctat 721 gaggtgcaag ttcctgagaa cagtcccctc aatgccttag ttgtcatggt ctctgccacg 781 gacttagatg ctgggatata tggcaatgtc gcctattctc tgtttcaagg ggatggatta 841 tctcaaccat ttgtaataga caaaatcaca ggagaaatcc gtctgaccaa agagctagat 901 ttcgaggtaa gtcaccatta taccatagaa attgcagcca ccgatggagg gggcctttca 961 ggaaaatgca ctgtggttat acaggtgttg gatgtgaatg acaacgcccc agagttggcg 1021 atcaggaagc tcacagtccc tgtcccagaa aattccgccg agactgtagt tgctgttttt 1081 agtgtttctg attctgattc gggggacaac ggaaggatag tgtgttctat tcagaacaat 1141 atcccatttc tcctgaaacc cacatttgag aattactaca ccttagtgac cgaggggcca 1201 cttgatagag agagcagagc tgagtacaac atcaccatca ctgtctggga tttgggcaca 1261 cccaggctca caacccagca caccataaca gtgcaggtgg ccgacatcaa cgacaacgcc 1321 cctgccttca cccaaacatc ctataccctg tttgtgcaag agaacaacag tcccgccctg 1381 catataggca ccatcagtgc cacagactca gattcaggct ccaacgccca catcacctac 1441 tcgctgctgc cgccccacga ttcacagctg gccctcgcct cgctagtctc catcaattca 1501 gacaatgggc agctgtttgc gctcagggcg atggactatg agatgcttca ggccttcgaa 1561 ctgcacgtgg acgccacaga tggaggctca cctgcgctca gcagccaggc cctcgtgcgt 1621 gtggtagtgc tagatgacaa tgacaattca cctttcgtgc tctacccgat gcagaatgcc 1681 tcagcaccct gtacggagct attgcccagg gcagcagagc ctggatacct gatcaccaaa 1741 gtggtggctg tggatcgcga ctctggccag aatgcctggc tgtcattcca actgctcaag 1801 gctacagagc cagggctgtt cagtgtgtgg gcgcacaatg gggaggtgcg caccaccagg 1861 ctgctgagtg agcgcgatgc tccaaagcac aagctgctgc tgctggtcaa ggacaatggc 1921 gatcctccgc gctctgccag cgtcacgctg cacgtgctag tggtggatgg cttctcgcag 1981 ccttacctgc ctctgccaga ggtggcgcgg gattccacgc aggacgatta tgacgtgctc 2041 acgctgtacc tagtcgttgc cttggcatct gtatcttctc tcttcctctt gtctgtgctg 2101 ttgtttgtgg gggtgagact gtgcaggagg gccagggcag cctccctggg tgattactct 2161 gtacctgagg gacactttcc tagccacctg gtggatgtca gtagagcagg gaccctgtcc 2221 cagagctatc aatatgaggt gtgtcttaat ggaggtactg gaacaaacga gttcaatttt 2281 cttaaaccat tgtttcctat tcttccgacc caggctgctg ctgaagaaag agaaaatgct 2341 gttgtgcgca atagcgttga attctattag //