LOCUS BC121953 4055 bp mRNA linear VRT 02-DEC-2006 DEFINITION Xenopus tropicalis hypothetical protein MGC146337, mRNA (cDNA clone MGC:146337 IMAGE:7692846), complete cds. ACCESSION BC121953 VERSION BC121953.1 KEYWORDS MGC. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. REFERENCE 1 (bases 1 to 4055) AUTHORS Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W. and Richardson,P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev. Dyn. 225 (4), 384-391 (2002) PUBMED 12454917 REFERENCE 2 (bases 1 to 4055) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 3 (bases 1 to 4055) AUTHORS Klein,S. and Gerhard,D.S. TITLE Direct Submission JOURNAL Submitted (15-AUG-2006) National Institutes of Health, Xenopus Gene Collection (XGC), National Institute of Child Health and Human Development, 6100 Executive Boulevard, Room 4B01, Rockville, MD 20892-7510, USA REMARK NIH-MGC Project COMMENT Contact: XGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Timothy Grammer (Richard M. Harland Laboratory, University of California, Berkeley) cDNA Library Preparation: Joint Genome Institute cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 274 Row: p Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis, Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..4055 /organism="Xenopus tropicalis" /mol_type="mRNA" /db_xref="taxon:8364" /clone="MGC:146337 IMAGE:7692846" /tissue_type="Testes, adult male" /clone_lib="NIH_XGC_tropTe4" /lab_host="ElectroMAX DH10B" /note="Vector: pCMV-SPORT6" gene 1..4055 /gene="MGC146337" /db_xref="GeneID:779967" CDS 151..3864 /gene="MGC146337" /codon_start=1 /product="hypothetical protein MGC146337" /protein_id="AAI21954.1" /db_xref="GeneID:779967" /translation="MITLTSSSGRKDFVTVRRTESLDVHGIIKRKTTTTERIFGRVNV IYLLEKANLAVTVYSAKNGVVANAVLLDYPNCDIVDQAEWEEKLPTHYEELSNCTPLN TLFLHLFVAKDEYSEQCIQEIIRVVFNTAPYLHFICLTAPRDEALGLALGSVFQQTKI VSASALAKQHSLYMCHRHNHCPQLYVRNARVEDYDDLIPIFMRHNDTLKATYGEFFLA ELIEAQDEQSHAIVSEDKGKAVGFMSVSSEINARLLQSCFDLGPFHGLCKPHPDDSLY ASVKTSIEKDLMLSRQDSKTSAAALSQQDNIDHNTTDEKIDSTNDAITVSTGNDTMGP REEDTLQEPNDLVSRDPAADDAIQTRNCRAPESGSNAAESQHPHPVYKGDVTAFSIQL FCIDEKHESRSVDFLSYAFSLFPDKDFCVITVPHLTPEFPLLQNFVRVVPLSTCTLSQ ELYVFHRAALISSIKVRAVRSNDIHNIRSLLETLHPQESILGDLQIYNQARRDDDGTP VQAFVAEVANQIVGVSVIRNEKDIEYIHSHYNIEDFIYFNHHQWEEHGHLHHFALNPI FMHFGRHFLKEILRLSHKSALYYPIYPSCNKEQFKNPCAHSLSSALHYMVPVRPRRQI VFPLEKLGINAPSKQVSKDQPSYSLNHFNRKLTLEPKVTINARIVVVGASEVGISFME TLVFCPHLKFNNITLISSTGLPENTPISTQEHGFLSTSHSYNDKDYALMSLRSWVNVV VGKMSGIDRAAKFVIVANGRKVPYDHLILCTGQQYQVPCPTEADVRKLLTNKEAPVSS NQRYTGKIPSNLFTLQNRQDCLAAMRFLKDSVVKQEGNVIVYGNTLDCYTTLSTLLSL GISGSRIHLVQPPLTMNVTCFNNYAIEEAVQKALLAEGISSYCNCVLAQWNDGAHPDP ICFATFTSDTKPLRLQCSAFFNFSRKSVDYEAFKAINDACLVYDGRLVIDTTFHTNDD SIRAAGTLTKYSNRYHASEWSHSNFSSKEIGFQLAANMLNIFDPTLEPVIEFTDEFDR LIPIYKGPVIQGGIIPGGFHYLHVNKPAIPCPLKAQMAQAHYGREIVTGSAVDGDYFR LHINQYNMVESITCLSQKPFPESNYICLYGHHERLLNNLCARFDEGLIKDLYSYFMKA WCMAIYHDRFIDFQQEVREMLAAEQGEGRPSMKQLAQQIADDELNLKEQPRQYLKRIL EENGHKKEIERKILNYLNYNSNHLSMFARPGMI" BASE COUNT 1203 a 912 c 856 g 1084 t ORIGIN 1 accgcccctg atgaatgtca cgcccagtcc cgtgtccata gcaaccgagt atcgcgtcct 61 gatcctgagc gaatgcctta cagctgctgc ctgcacaagt gaccgaaccc actgggcttc 121 ctgacagatt acatatcgct atttatcatc atgataactt taacttcatc aagtggaaga 181 aaggactttg ttactgtcag aagaacagaa tcactagatg ttcatggcat cattaagcga 241 aaaacaacca ccacagaaag gatatttggg agagtcaatg tcatatatct gctggagaaa 301 gcaaacttgg ctgtgaccgt ctacagtgca aaaaatggtg tggtggccaa tgctgtcctc 361 ttggattatc caaactgcga tattgtggat caggcagagt gggaggaaaa gctgcctaca 421 cactatgaag agctgagcaa ttgcacacct ctgaacacac tgtttctgca cctttttgtg 481 gccaaagacg aatattctga gcagtgtatt caggagatca tacgggtggt gttcaataca 541 gccccatatc tgcactttat atgtcttaca gctccacggg atgaagcact tggtttggct 601 ttagggtcag tgtttcagca gacaaaaatc gtgtctgcat cagctcttgc aaagcagcat 661 tctctgtaca tgtgtcatag gcacaaccac tgtccacagc tgtatgtccg gaatgcaaga 721 gtggaagatt atgatgatct gataccgatt tttatgcgtc acaatgatac ccttaaagct 781 acatatgggg aattcttcct tgcagagctg atcgaagctc aagatgagca gagccacgct 841 attgttagtg aggataaggg caaagctgtg ggctttatga gtgtgagttc tgagattaat 901 gccagactgc tgcagagctg cttcgacttg gggccttttc atggactgtg caagccacat 961 cctgatgata gtttatatgc aagtgtaaaa acaagcattg agaaagatct aatgttaagc 1021 agacaagaca gtaagacttc tgctgctgcg ttgtcacaac aagataacat cgatcacaac 1081 acaacagacg aaaagataga ctcaacgaat gatgcaatta cagtctccac tggaaatgat 1141 acgatggggc ctagagaaga ggatacattg caagaaccca atgatttagt aagcagggat 1201 cctgctgcag atgatgccat ccaaacaagg aattgcaggg ctccagagag cgggagcaat 1261 gcagccgaga gccagcatcc ccatcctgta tataaaggtg atgtcactgc cttcagtatc 1321 cagctgttct gtatcgatga aaaacacgag tcaaggtctg tggatttttt gagctatgca 1381 ttcagtctgt tccctgacaa agacttttgc gtcatcacgg ttcctcatct gacacccgag 1441 tttcctcttc ttcaaaactt tgtacgcgta gtccctttga gcacctgcac tttatcccag 1501 gaactgtatg tgttccatcg cgctgctctt attagctcaa taaaagtcag agcagtgagg 1561 agcaatgata tacacaatat cagaagcctc ctagagaccc tacaccctca agaaagcatt 1621 ttgggtgatt tgcaaatcta caaccaagca cggagagatg atgacgggac ccctgttcaa 1681 gcttttgtag ctgaagttgc aaatcagatt gtcggtgttt ctgttatcag aaatgaaaag 1741 gacattgagt atattcactc acactacaat attgaggatt ttatctactt caatcaccac 1801 caatgggagg aacacgggca ccttcaccat tttgctctaa atccaatatt tatgcacttt 1861 ggaaggcatt tccttaaaga aatcctgcgg ctatcccaca agtctgctct atattaccct 1921 atatatccct catgtaataa agaacaattt aagaatccct gtgcccattc tctgtcatct 1981 gcccttcatt atatggttcc cgtgcgacca agacgacaga ttgtctttcc tctggaaaag 2041 cttggcataa atgctccatc aaagcaggtc tccaaggatc agccaagcta ctcattaaac 2101 cactttaatc ggaaacttac cttagagccc aaggtgacca tcaatgcccg cattgtcgta 2161 gtaggagcgt ctgaggttgg aatctctttt atggaaactc ttgttttttg tcctcacttg 2221 aagttcaata acattacatt gatttcatcc actgggcttc ctgagaatac accaatttct 2281 acccaggaac atggctttct ttctaccagc cacagctata acgataaaga ttatgcactg 2341 atgtcacttc gatcctgggt taatgttgtg gttggtaaaa tgagtggcat agacagggct 2401 gccaagtttg tcatagttgc caatggcaga aaagtgccat atgaccatct cattctttgt 2461 actgggcaac aataccaggt tccctgccct acagaagcag atgtccgtaa gcttctgact 2521 aataaagaag ccccagtgtc ttcaaatcag aggtacacag gcaaaattcc ttcaaatctc 2581 tttaccctac aaaacaggca ggactgcttg gcggcaatga gatttttgaa agacagtgtt 2641 gtcaagcaag aaggtaatgt gattgtgtat gggaatacac ttgactgtta cactacactt 2701 tctacccttt tatcacttgg aattagtgga agtcgcatcc atctggtaca gccaccactt 2761 acgatgaatg ttacttgctt taacaactat gctatagaag aagctgtaca gaaagcctta 2821 ttggctgaag ggatatcatc ctactgcaac tgcgtattag cacagtggaa tgacggggca 2881 catccagacc caatatgttt tgcgacattc accagcgaca caaaacctct gagattacag 2941 tgctctgcat tttttaactt ttctcggaaa agtgtggact atgaagcctt caaagcaata 3001 aatgatgcct gcctagttta tgatggaagg cttgtcattg atacaacatt tcacacaaat 3061 gatgattcca taagagcagc aggaacctta acgaaatact ccaatcgtta tcacgcaagt 3121 gaatggtcac atagcaattt cagctctaaa gaaatcggct tccagcttgc tgctaatatg 3181 cttaatattt tcgatccgac acttgagcca gtcattgaat tcacagacga atttgacaga 3241 ctcatcccaa tctacaaagg acctgtaatt caaggtggta tcattcctgg gggcttccat 3301 tacttacatg taaacaaacc tgcaattccc tgtcctttaa aggctcaaat ggcacaggct 3361 cattatgggc gggagatagt aacaggaagt gcagtggatg gagattactt ccggctacac 3421 atcaatcaat acaatatggt ggaatctatt acctgcctat cacaaaaacc ttttccagag 3481 tccaattaca tatgtctgta cggccatcat gagcgactgc tgaacaatct gtgtgctcga 3541 tttgatgagg ggctcatcaa ggacttgtac agctacttca tgaaagcatg gtgcatggcc 3601 atctatcacg atcgctttat cgatttccag caagaggtgc gcgagatgct agcagctgag 3661 caaggtgaag gacggcccag tatgaagcag ctggctcagc aaatagcaga tgatgagctg 3721 aacctgaagg agcagccgag acaatatttg aagagaatcc tggaggaaaa tggccacaag 3781 aaggaaatag agaggaaaat cctgaattat ctgaactaca acagcaacca cctgtccatg 3841 tttgcaaggc ctggaatgat ttagtccctg tgacgttcta cagtacatca cccaatgctt 3901 tatacctgag cctgcactgc acatgctgtc ctgtaggggg ccactgagcc accaaaacaa 3961 caccaataca ttcatttcat gcaaaattgt tttttccttt ttattttatt catttacaat 4021 aaaatgttat tttgtcctgc aaaaaaaaaa aaaaa //