LOCUS BC107655 4109 bp mRNA linear ROD 15-APR-2009 DEFINITION Rattus norvegicus spondin 1, extracellular matrix protein, mRNA (cDNA clone MGC:124557 IMAGE:7935103), complete cds. ACCESSION BC107655 VERSION BC107655.1 KEYWORDS MGC. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 4109) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4109) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (23-OCT-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Jeff Green/Paturu Kondaiah, NCI. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 243 Row: k Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 25453371. FEATURES Location/Qualifiers source 1..4109 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /clone="MGC:124557 IMAGE:7935103" /tissue_type="Prostate, pool of NCI_CGAP_Pr30, 40, 41 and NCI_CGAP_Pr29, 39, 42" /clone_lib="NCI_CGAP_Pr50" /lab_host="DH10B" /note="Vector: pCMV-SPORT6.1" gene 1..4109 /gene="Spon1" /gene_synonym="Sponf" /db_xref="GeneID:64456" /db_xref="RGD:619918" CDS 303..2726 /gene="Spon1" /gene_synonym="Sponf" /codon_start=1 /product="spondin 1, extracellular matrix protein" /protein_id="AAI07656.1" /db_xref="GeneID:64456" /db_xref="RGD:619918" /translation="MRLSPAPLRLSRGPALLALALPLAAALAFSDETLDKVAKSEGYC SRILRAQGTRREGYTEFSLRVEGDPDFYKPGSSYRVTLSAAPPSYFRGFTLIALKENR EGDKEEDHAGTFQIIDEEETQFMSNCPVAVTESTPRRRTRIQVFWIAPPTGTGCVILK ASIVQKRIIYFQDEGSLTKKLCEQDPTLDGVTDRPILDCCACGTAKYRLTFYGNWSEK THPKDYPRRANHWSAIIGGSHSKNYVLWEYGGYASEGVKQVAELGSPVKMEEEIRQQS DEVLTVIKAKAQWPAWQPVNVRAAPSAEFSVDRTRHLMSFLTMMGPSPDWNVGLSAED LCTKECGWVQKVVQDLIPWDAGTDSGVTYESPNKPTIPQEKIRPLTSLDHPQSPFYDP EGGSITQVARVVIERIARKGEQCNIVPDNVDDIVADLAPEEKDEDDTPETCIYSNWSP WSACSSSTCEKGKRMRQRMLKAQLDLSVPCPDTQDFQPCMGPGCSDEDGSTCTMSEWI TWSPCSVSCGMGMRSRERYVKQFPEDGSVCMLPTEETEKCTVNEECSPSSCLVTEWGE WDDCSATCGMGMKKRHRMVKMSPADGSMCKAETSQAEKCMMPECHTIPCLLSPWSEWS DCSVTCGKGMRTRQRMLKSLAELGDCNEDLEQAEKCMLPECPIDCELSEWSQWSECNK SCGKGHMIRTRTIQMEPQFGGAPCPETVQRKKCRARKCLRSPSIQKLRWREARESRRS EQLREESDGEQFPGCRMRPWTAWSECTKLCGGGIQERYMTVKKRFKSSQFTSCKDKKE IRACNVHPC" BASE COUNT 1024 a 1087 c 1102 g 896 t ORIGIN 1 acaaacacca gagcgcccgc taatcgccag ctcagaaaca aaacagcact gcgctggggg 61 atccgggcgc aaatcagccc tccctcttcg cgctccttcg ccaccgcccg cccctcagct 121 ccgctgctcg gctccgctca gagcagcgca gctccgcagc caaagcgagg cgggctcggg 181 ctccccaccg ccagtgccac ccgggctcct ccagctttcg cctctgcagc tcccgtcact 241 tggagtaaaa gtgtcctgac aggggtctgc aacatcagca taaagttggg aggtcctcga 301 gaatgaggct atctcccgcg cccctgaggc ttagccgggg tccggcgctg ctggccctgg 361 cgctgcccct ggccgcagcg ctcgctttct cggatgagac cctggacaaa gtggccaagt 421 cggagggcta ctgcagccgc atcttgcgcg cccagggcac acggcgtgag ggatacacag 481 agttcagcct ccgcgtggaa ggcgaccctg acttctataa gccaggaagc agctaccgag 541 tgacactctc ggctgcccct ccctcctact tcagaggctt cacgttaatt gctctcaaag 601 agaaccgcga aggcgataag gaagaagacc acgcgggcac cttccagatc atagatgaag 661 aagaaaccca gtttatgagt aactgtcctg tggcagtcac tgaaagcacc cctcggagga 721 ggacacggat ccaggtgttt tggatagcgc cacccacagg gacaggctgt gtgattctga 781 aggccagcat tgtacagaaa cgcattatct attttcaaga cgagggctcc ctgaccaaga 841 agctgtgtga acaggatccc acacttgatg gagtgacgga cagaccgatc ttagactgct 901 gcgcctgcgg aactgccaag tacagactca cgttttatgg gaactggtcg gagaagactc 961 atccaaagga ttaccctcgt cgggctaatc actggtctgc catcattggc ggatcccact 1021 ccaagaacta cgtgctgtgg gagtacggag ggtatgccag tgaaggggtc aagcaagttg 1081 ctgaacttgg ctcaccagta aaaatggagg aagaaattcg acaacagagt gatgaagtcc 1141 tcactgtcat caaagccaaa gcccagtggc cagcctggca gcctgtcaat gtgagagcag 1201 caccctcagc cgaattctca gtggacagga cacgccactt gatgtccttc ctaaccatga 1261 tgggccccag tcctgactgg aacgtgggcc tatctgcaga ggatctgtgc accaaggagt 1321 gtggctgggt ccagaaagtg gtgcaggacc taattccctg ggatgctggc acggacagcg 1381 gggtgaccta cgagtcacca aacaagccca caattcctca ggaaaaaatc cgacccctga 1441 ctagtctgga ccatcctcag agtcctttct atgacccgga aggtgggtcc atcacacaag 1501 tggccagagt cgtcatcgag agaattgccc ggaagggaga acaatgcaac attgtacctg 1561 acaatgtgga tgatattgta gccgacctgg ctccagaaga gaaagatgaa gatgacaccc 1621 ctgaaacctg catctactcc aactggtccc catggtcggc ctgcagctct tccacttgtg 1681 aaaagggtaa gaggatgcgg caacgcatgc tgaaggcaca gctggacctc agtgtcccct 1741 gtcctgacac ccaggacttc cagccctgca tgggccccgg ctgcagcgat gaagatggct 1801 ccacctgtac catgtcggag tggatcacct ggtcaccctg cagtgtctcg tgtggcatgg 1861 gtatgaggtc ccgggagagg tacgtgaagc agttcccgga agacggctcg gtgtgcatgc 1921 tgcccacgga agagacagag aagtgcacgg tcaacgagga gtgctctcct agcagctgcc 1981 tggtgactga gtggggtgag tgggatgact gcagcgccac ctgtggaatg ggcatgaaga 2041 agcggcaccg catggtcaag atgagccccg cggacggctc catgtgcaag gcggagactt 2101 cgcaggcgga gaaatgcatg atgcctgagt gccataccat cccgtgcttg ctgtctcctt 2161 ggtccgagtg gagcgactgt agcgtgacct gtgggaaggg catgcggacg cgccagcgga 2221 tgctcaagtc tctggcagag ctgggggact gtaatgagga tctggagcag gcggagaagt 2281 gtatgctgcc agagtgcccc attgactgcg aactcagtga gtggtcccag tggtctgaat 2341 gtaacaagtc ctgtgggaaa ggtcacatga ttcgaacccg gacaatccaa atggaacctc 2401 agtttggagg tgcaccctgc ccagagactg tgcaacgcaa gaagtgccgt gcccggaaat 2461 gccttcgcag cccatcgatc cagaagctgc gctggaggga ggcccgagag agcaggagga 2521 gtgagcagct gagggaagag tcagatggag agcagttccc aggctgtcgg atgcgcccgt 2581 ggacagcctg gtcagagtgc accaaactgt gcggaggtgg gatccaagaa cgctacatga 2641 ctgtgaagaa gaggttcaaa agctcccagt ttaccagctg caaagacaag aaggagatca 2701 gagcgtgcaa cgtgcaccct tgttagtagg ggttcaactc cccagggctg cattccagat 2761 tctagtcacc aatggttggg tggtgtattt gcttgtttaa gatgatttaa attgtgtcca 2821 ctagttttca tttttacggt gtggtttgcc caatagtctt atggaggccg agggacatct 2881 tgtctgaata cttcttggtg agtacaggcc aagcggggca tcttgtcccc aggcgccatc 2941 ttcctgcact gagttgagta gtgttggttc accttgtact aaactgaatc gtgtccctct 3001 ggagcatccc cctggtcaag cagggtggag actttggcca tccacaagga gaagcaacca 3061 ggatgcagca tgcgggagac acagccatta attgcaaagg acagatcctc ctctctcacc 3121 tttggcctgc tcactcttac agaaacctgt ttgtccgcct ccttttttat ttagcacaac 3181 tccaggcatc ttggtaagtc tccagggtca tgggttcttc ggtgccctga aggagaagcc 3241 ctgaggtgag gtggcatttg ttacaaacct cccaatactg ctttactggc atcacaaggt 3301 cagcaggtga tgatggctac ttcatttcat tgtgagccgt gatttccgtt gagttttgat 3361 tgttggtgcc ataaatgtcc taggatgctg gacggacaca tcagccttgt cagcagatcc 3421 ttctttgagc caatgtagac agtaagctgg gcactggttc caaagccaac ttaaaatctt 3481 cctacacata tccagacctt ttaggttgcc caaacttcct tagaataaag cattttagct 3541 ctgagaacta cttgataagt ctgccaggaa gcccccaagt caattcttca acaaaaatac 3601 tatcttccct acttaatttt ttttaagtca tgatatttta tagttagagg agagagagac 3661 aatctattcc catgactaag acacaaacct acaagaaagg gttactcagt caagcctgtg 3721 cctgacttct ggaccaggcc cctgattttc atggatagtc caaaggaagg ccaggggttc 3781 ccactgactt ccaagccatc agcagcaccc taaacccagg agtcaacaaa tattcagagc 3841 aagaggatgt ttatctcagc tatgagctca ttggcaggtt tgtactcatg catctgttaa 3901 aagcaccacc acatcctttt gcaagtctgt ttattaccgc ttcatccaaa tacattttgt 3961 ggtcaagatg cacacagtgc tatgaataca gtactttaag gatctgcatt aaacacatca 4021 gaatatttcc tgccacatct atgtacaacc cctgaatatg tatttttcct taacacaaga 4081 gagcctgttc aattaaaaaa aaaaaaaaa //