LOCUS BC106716 5011 bp mRNA linear HUM 04-OCT-2006 DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, D, mRNA (cDNA clone MGC:119753 IMAGE:40027585), complete cds. ACCESSION BC106716 VERSION BC106716.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5011) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5011) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-OCT-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 5 Row: l Column: 8. FEATURES Location/Qualifiers source 1..5011 /db_xref="H-InvDB:HIT000338459" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:119753 IMAGE:40027585" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_283" /note="Vector: pCR-Blunt II-TOPO with reversed insert; Clone identification sequence tag: TAATTATT sequenced from the forward primer" gene 1..5011 /gene="PTPRD" /gene_synonym="HPTP" /gene_synonym="HPTP-DELTA" /gene_synonym="HPTPD" /gene_synonym="PTPD" /gene_synonym="R-PTP-DELTA" /db_xref="GeneID:5789" /db_xref="HGNC:HGNC:9668" /db_xref="MIM:601598" CDS 52..4542 /gene="PTPRD" /gene_synonym="HPTP" /gene_synonym="HPTP-DELTA" /gene_synonym="HPTPD" /gene_synonym="PTPD" /gene_synonym="R-PTP-DELTA" /codon_start=1 /product="PTPRD protein" /protein_id="AAI06717.1" /db_xref="GeneID:5789" /db_xref="HGNC:HGNC:9668" /db_xref="MIM:601598" /translation="MVHVARLLLLLLTFFLRTDAETPPRFTRTPVDQTGVSGGVASFI CQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASN NVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWF KDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLY VRELREVRRVPPRFSIPPTNHEIMPGGSVNITCVAVGSPMPYVKWMLGAEDLTPEDDM PIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQITVKALPKPPGTPVVTESTATSIT LTWDSGNPEPVSYYIIQHKPKNSEELYKEIDGVATTRYSVAGLSPYSDYEFRVVAVNN IGRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYT MDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTG VPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRL QGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSTVFAKNFHVKAVMKTSVLLSWEI PENYNSAMPFKILYDDGKMVEEVDGRATQKLIVNLKPEKSYSFVLTNRGNSAGGLQHR VTAKTAPDVLRTKPAFIGKTNLDGMITVQLPEVPANENIKGYYIIIVPLKKSRGKFIK PWESPDEMELDELLKEISRKRRSIRYGREVELKPYIAAHFDVLPTEFTLGDDKHYGGF TNKQLQSGQEYVFFVLAVMEHAESKMYATSPYSDPVVSMDLDPQPITDEEEGLIWVVG PVLAVVFIICIVIAILLYKRKRAESDSRKSSIPNNKEIPSHHPTDPVELRRLNFQTPG MASHPPIPILELADHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLEVNKPKNRYAN VIAYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRMIWEQ RSATVVMMTKLEERSRVKCDQYWPSRGTETHGLVQVTLLDTVELATYCVRTFALYKNG SSEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPPDAGPMVVHCSAGVGRTGC FIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGNTEV PARNLYAYIQKLTQIETGENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRLVNI MPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHN STIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARD GQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTG VFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDQYQFSYRAALEYLGSFDHY AT" BASE COUNT 1528 a 1128 c 1162 g 1193 t ORIGIN 1 ccggaggcag tgattccaag ctgctcgcgc acgctgctgc caagctgcag gatggtgcac 61 gtagccaggc tgctgctgct gctcctcact ttcttcctcc gcacggatgc tgagacacct 121 ccaaggttta cacgaacacc cgttgatcag acaggggtct ctggcggagt tgcctctttc 181 atctgccaag ctacgggaga cccaagacct aaaattgtct ggaacaaaaa aggaaagaaa 241 gtcagcaatc agagatttga ggtaatagag tttgacgatg ggtctggatc agttctcaga 301 atacaaccct tacggactcc gagggatgag gccatttatg aatgtgtggc ctcaaataat 361 gtgggagaaa taagtgtatc caccagactc acagttttgc gggaagatca aattcccagg 421 ggcttcccta ccattgacat gggcccacag ttgaaggtgg ttgagcgtac tcgcacggcc 481 accatgcttt gtgcagccag tggtaatccg gatccagaaa tcacttggtt taaagatttc 541 ttacctgtgg acacaagcaa caacaatggt cgtattaagc agttacgatc agaatctatt 601 ggagcccttc agattgagca gagtgaagag tctgaccaag gaaaatatga gtgtgttgcc 661 accaacagcg cgggcactcg ctattccgct cctgccaatt tatatgtcag agagctgcga 721 gaagttcgcc gtgtcccacc aagattctct atcccaccca ctaatcatga aatcatgcca 781 ggcggaagcg ttaatatcac ctgtgtggcc gtggggtcac caatgcctta tgtaaagtgg 841 atgttggggg cagaagatct gacacctgaa gatgatatgc caataggaag aaatgtgcta 901 gaactgaatg atgtaagaca gtcagcaaat tacacctgtg ttgctatgtc aacactgggt 961 gtcattgaag caatagcaca gatcactgtc aaagccttac ccaaacctcc aggaactcct 1021 gtagtgaccg agagcacagc tacaagcatc acactgacgt gggactctgg gaaccctgag 1081 cctgtttctt attacataat tcagcataaa cctaaaaact ctgaggaact ttacaaagaa 1141 attgatgggg tggcgaccac acgctacagt gtcgctggac taagtcccta ctcggattat 1201 gaattcaggg ttgttgctgt caataacatt gggcgggggc ctcccagcga acctgtgcta 1261 acacaaacct cagagcaagc accatccagt gccccgaggg atgtccaggc acgaatgttg 1321 agttcgacca ccattttggt acagtggaag gaacctgaag agccaaatgg acagatccaa 1381 ggatatagag tttattatac aatggatccc actcaacatg tcaacaactg gatgaaacac 1441 aatgtagctg acagccaaat cactactatt ggcaacttag tgccccagaa aacatattct 1501 gtcaaagtcc tggcttttac ctcaattgga gatggtcccc tttcaagtga catacaagtc 1561 atcactcaga caggagtacc agggcagcca ctaaacttca aagcagaacc tgagtctgaa 1621 acaagtattt tgctctcttg gacacctcca cgttcagata ccattgccaa ctatgaactg 1681 gtctacaaag atggggagca tggagaggag caacgaatta ccattgagcc agggacatca 1741 tataggctgc aaggactgaa accaaacagc ttatactatt tccgtctggc tgcacgctcc 1801 cctcaaggcc tgggtgcttc tactgcagaa atatcagcta gaaccatgca gtcaacagtg 1861 tttgcaaaaa attttcatgt caaagcagta atgaagactt ccgtgttgct gtcttgggag 1921 attccagaga attataactc cgccatgcct ttcaaaattc tttatgatga tgggaaaatg 1981 gtagaagaag tggatggccg agccacacag aagttaattg tcaacctgaa gcctgagaaa 2041 tcatattcat ttgtgctgac aaatcgtgga aacagtgctg gtgggctgca gcacagggtc 2101 acggcaaaga ctgcaccaga tgtattacgt accaagcctg ccttcattgg gaagaccaac 2161 ttggatggca tgattactgt gcaactgcct gaagtacctg caaatgagaa tataaaaggt 2221 tactacataa taattgtgcc tttgaagaaa tctcgcggga aatttatcaa gccatgggag 2281 agtccagatg aaatggaatt agatgagctg cttaaggaga tatctaggaa gcgcagaagc 2341 atccgttatg ggagagaagt tgaattaaag ccatatattg ccgctcactt tgatgtcctt 2401 cccactgagt tcaccctggg ggatgacaag cattatggtg gatttacaaa caagcaactc 2461 caaagtggtc aagaatatgt cttctttgtg ttagcagtaa tggaacatgc agagtctaag 2521 atgtatgcaa ccagccctta ctccgacccc gtggtgtcaa tggatctgga tccgcagcca 2581 atcacggatg aagaagaagg cttgatctgg gttgtaggtc ctgtccttgc agtggtcttt 2641 atcatctgca ttgtcattgc tattcttctt tataaaagga agagggcaga gtccgactct 2701 agaaaaagca gcataccgaa caataaggag atcccttcac accacccaac agaccctgta 2761 gaactgaggc gccttaactt tcaaacaccg ggtatggcta gccatcctcc aatacccatc 2821 ttggaacttg cagaccacat tgaaagattg aaagcaaatg acaacttgaa gttttcccag 2881 gaatatgagt caattgaccc tggccagcag ttcacttggg aacattcaaa cttggaagta 2941 aacaaaccaa agaatagata cgcgaatgta atcgcatatg atcattcccg ggttctccta 3001 tcagctatag aagggatccc aggaagtgac tatgtgaatg ccaactacat agatggctat 3061 aggaagcaaa atgcctatat tgcaacacag ggatctctcc ccgaaacatt tggggacttt 3121 tggagaatga tatgggaaca acggagtgcc acagttgtca tgatgacaaa actagaagaa 3181 agatcaaggg tgaagtgtga ccagtattgg cctagcagag gcacagaaac ccacggactc 3241 gttcaagtaa cgctgcttga tactgtggag ctggccacat attgtgttcg aacatttgca 3301 ctttacaaga atggttcaag tgagaagaga gaagtgagac aattccagtt caccgcctgg 3361 cctgatcatg gtgttccaga acaccctaca ccttttctag ctttcttacg tagagtcaaa 3421 acctgtaacc ctcccgatgc tggtccgatg gttgtgcact gcagtgcggg agttggccgg 3481 actggttgct tcatcgtcat agatgccatg ttagaaagaa taaagcatga aaaaactgta 3541 gatatttatg gccatgtaac tttaatgaga gcccagagga actatatggt tcaaacagaa 3601 gaccaataca tctttatcca tgatgcactg ttagaagcag tgacttgtgg aaataccgaa 3661 gtgccagcta gaaacttgta tgcctacatt cagaagctga cacaaataga aacgggagag 3721 aatgtcacag gaatggagct cgaatttaag cgtctagcca gctcaaaagc tcacacctca 3781 aggtttatca gtgccaatct tccatgtaat aaattcaaaa atcgccttgt taatattatg 3841 ccatatgaat ccacaagggt atgcctgcag cctatccgtg gagtagaagg atctgattac 3901 atcaatgcca gttttattga tggatacaga caacagaaag cctacatcgc tacccagggg 3961 cccttggcag agaccactga agacttctgg cggatgctct gggaacacaa ttccaccata 4021 gttgtgatgc tcaccaagct gcgtgaaatg ggcagagaga aatgtcacca atactggcca 4081 gcagaacggt ctgcaagata ccagtacttt gttgtagatc ccatggctga gtacaacatg 4141 ccacagtata tcctaaggga attcaaggtc acagatgcca gggacggcca gtcccgaaca 4201 gtaaggcagt tccagttcac tgactggcca gagcaaggag tgccaaagtc cggagaagga 4261 tttattgact tcatcggcca agtccataaa acaaaagaac agtttggcca agatggaccc 4321 atttcagtcc attgcagcgc gggcgttgga agaactggag tcttcataac gctaagcatt 4381 gttttggaaa gaatgagata tgaaggagtt gtagatatct tccagactgt caaaatgtta 4441 agaacacaac gaccagctat ggtacagaca gaggatcaat atcagttttc ctatcgtgcc 4501 gcactagagt acctgggcag ctttgaccac tatgcaacgt agaaacccct gacccattct 4561 ggatttttac tacaggccct tcaatatcca tggagtctct tctgagccat acagggcact 4621 tgagaagtcc ttcttaactt ctagctaaca actacttagt gggactatta cacacaaaac 4681 aaattaaaaa caaattattc caggtggacc aagaattcac agtttaataa tctaacctga 4741 aaaataatga agagaatcct gactgatgag gcatctgaag gattttattt acagatacct 4801 caaggattca aaatcaaggg aagaagaaat cacagcaaag aaccaccatc ttattcagga 4861 ttgcttgaaa ggtgcaagga gaaattgcca gaatgctgca gttcagcaca agatatgtgc 4921 tggtgtggct tctcacaatg aaacggactc tgctttgaca tcgccccttc ccaccatact 4981 gctcataata acattttagg ggccaagggg a //