LOCUS BC106715 5039 bp mRNA linear HUM 09-MAR-2007 DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, D, mRNA (cDNA clone MGC:119752 IMAGE:40027584), complete cds. ACCESSION BC106715 VERSION BC106715.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5039) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5039) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-OCT-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Oct 4, 2006 this sequence version replaced BC106715.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 5 Row: l Column: 7. FEATURES Location/Qualifiers source 1..5039 /db_xref="H-InvDB:HIT000338458" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:119752 IMAGE:40027584" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_282" /note="Vector: pCR-Blunt II-TOPO; Clone identification sequence tag: NA" gene 1..5039 /gene="PTPRD" /gene_synonym="HPTP" /gene_synonym="HPTP-DELTA" /gene_synonym="HPTPD" /gene_synonym="PTPD" /gene_synonym="R-PTP-DELTA" /db_xref="GeneID:5789" /db_xref="HGNC:HGNC:9668" /db_xref="MIM:601598" CDS 52..4569 /gene="PTPRD" /gene_synonym="HPTP" /gene_synonym="HPTP-DELTA" /gene_synonym="HPTPD" /gene_synonym="PTPD" /gene_synonym="R-PTP-DELTA" /codon_start=1 /product="PTPRD protein" /protein_id="AAI06716.1" /db_xref="GeneID:5789" /db_xref="HGNC:HGNC:9668" /db_xref="MIM:601598" /translation="MVHVARLLLLLLTFFLRTDAETPPRFTRTPVDQTGVSGGVASFI CQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASN NVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWF KDFLPVDTSNNNGRIKQLRSESIGGTPIRGALQIEQSEESDQGKYECVATNSAGTRYS APANLYVRELREVRRVPPRFSIPPTNHEIMPGGSVNITCVAVGSPMPYVKWMLGAEDL TPEDDMPIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQITVKALPKPPGTPVVTES TATSITLTWDSGNPEPVSYYIIQHKPKNSEELYKEIDGVATTRYSVAGLSPYSDYEFR VVAVNNIGRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQG YRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQ VITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEP GTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSMFAKNFHVKAVMKTSVL LSWEIPENYNSAMPFKILYDDGKMVEEVDGRATQKLIVNLKPEKSYSFVLTNRGNSAG GLQHRVTAKTAPDVLRTKPAFIGKTNLDGMITVQLPEVPANENIKGYYIIIVPLKKSR GKFIKPWESPDEMELDELLKEISRKRRSIRYGREVELKPYIAAHFDVLPTEFTLGDDK HYGGFTNKQLQSGQEYVFFVLAVMEHAESKMYATSPYSDPVVSMDLDPQPITDEEEGL IWVVGPVLAVVFIICIVIAILLYKSKPDRKRAESDSRKSSIPNNKEIPSHHPTDPVEL RRLNFQTPGMASHPPIPILELADHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLEV NKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFG DFWRMIWEQRSATVVMMTKLEERSRVKCDQYWPSRGTETHGLVQVTLLDTVELATYCV RTFALYKNGSSEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPPDAGPMVVHC SAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDALLE AVTCGNTEVPARNLYAYIQKLTQIETGENVTGMELEFKRLASSKAHTSRFISANLPCN KFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTED FWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILR EFKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVH CSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDQYQFSYRAAL EYLGSFDHYAT" BASE COUNT 1539 a 1133 c 1170 g 1197 t ORIGIN 1 ccggaggcag tgattccaag ctgctcgcgc acgctgctgc caagctgcag gatggtgcac 61 gtagccaggc tgctgctgct gctcctcact ttcttcctcc gcacggatgc tgagacacct 121 ccaaggttta cacgaacacc cgttgatcag acaggggtct ctggcggagt tgcctctttc 181 atctgccaag ctacgggaga cccaagacct aaaattgtct ggaacaaaaa aggaaagaaa 241 gtcagcaatc agagatttga ggtaatagag tttgacgatg ggtctggatc agttctcaga 301 atacaaccct tacggactcc gagggatgag gccatttatg aatgtgtggc ctcaaataat 361 gtgggagaaa taagtgtatc caccagactc acagttttgc gggaagatca aattcccagg 421 ggcttcccta ccattgacat gggcccacag ttgaaggtgg ttgagcgtac tcgcacggcc 481 accatgcttt gtgcagccag tggtaatccg gatccagaaa tcacttggtt taaagatttc 541 ttacctgtgg acacaagcaa caacaatggt cgtattaagc agttacgatc agaatctatt 601 ggtggtacac caataagagg agcccttcag attgagcaga gtgaagagtc tgaccaagga 661 aaatatgagt gtgttgccac caacagcgcg ggcactcgct attccgctcc tgccaattta 721 tatgtcagag agctgcgaga agttcgccgt gtcccaccaa gattctctat cccacccact 781 aatcatgaaa tcatgccagg cggaagcgtt aatatcacct gtgtggccgt ggggtcacca 841 atgccttatg taaagtggat gttgggggca gaagatctga cacctgaaga tgatatgcca 901 ataggaagaa atgtgctaga actgaatgat gtaagacagt cagcaaatta cacctgtgtt 961 gctatgtcaa cactgggtgt cattgaagca atagcacaga tcactgtcaa agccttaccc 1021 aaacctccag gaactcctgt agtgaccgag agcacagcta caagcatcac actgacgtgg 1081 gactctggga accctgagcc tgtttcttat tacataattc agcataaacc taaaaactct 1141 gaggaacttt acaaagaaat tgatggggtg gcgaccacac gctacagtgt cgctggacta 1201 agtccctact cggattatga attcagggtt gttgctgtca ataacattgg gcgggggcct 1261 cccagcgaac ctgtgctaac acaaacctca gagcaagcac catccagtgc cccgagggat 1321 gtccaggcac gaatgttgag ttcgaccacc attttggtac agtggaagga acctgaagag 1381 ccaaatggac agatccaagg atatagagtt tattatacaa tggatcccac tcaacatgtc 1441 aacaactgga tgaaacacaa tgtagctgac agccaaatca ctactattgg caacttagtg 1501 ccccagaaaa catattctgt caaagtcctg gcttttacct caattggaga tggtcccctt 1561 tcaagtgaca tacaagtcat cactcagaca ggagtaccag ggcagccact aaacttcaaa 1621 gcagaacctg agtctgaaac aagtattttg ctctcttgga cacctccacg ttcagatacc 1681 attgccaact atgaactggt ctacaaagat ggggagcatg gagaggagca acgaattacc 1741 attgagccag ggacatcata taggctgcaa ggactgaaac caaacagctt atactatttc 1801 cgtctggctg cacgctcccc tcaaggcctg ggtgcttcta ctgcagaaat atcagctaga 1861 accatgcagt caatgtttgc aaaaaatttt catgtcaaag cagtaatgaa gacttccgtg 1921 ttgctgtctt gggagattcc agagaattat aactccgcca tgcctttcaa aattctttat 1981 gatgatggga aaatggtaga agaagtggat ggccgagcca cacagaagtt aattgtcaac 2041 ctgaagcctg agaaatcata ttcatttgtg ctgacaaatc gtggaaacag tgctggtggg 2101 ctgcagcaca gggtcacggc aaagactgca ccagatgtat tacgtaccaa gcctgccttc 2161 attgggaaga ccaacttgga tggcatgatt actgtgcaac tgcctgaagt acctgcaaat 2221 gagaatataa aaggttacta cataataatt gtgcctttga agaaatctcg cgggaaattt 2281 atcaagccat gggagagtcc agatgaaatg gaattagatg agctgcttaa ggagatatct 2341 aggaagcgca gaagcatccg ttatgggaga gaagttgaat taaagccata tattgccgct 2401 cactttgatg tccttcccac tgagttcacc ctgggggatg acaagcatta tggtggattt 2461 acaaacaagc aactccaaag tggtcaagaa tatgtcttct ttgtgttagc agtaatggaa 2521 catgcagagt ctaagatgta tgcaaccagc ccttactccg accccgtggt gtcaatggat 2581 ctggatccgc agccaatcac ggatgaagaa gaaggcttga tctgggttgt aggtcctgtc 2641 cttgcagtgg tctttatcat ctgcattgtc attgctattc ttctttataa aagtaaaccc 2701 gacaggaaga gggcagagtc cgactctaga aaaagcagca taccgaacaa taaggagatc 2761 ccttcacacc acccaacaga ccctgtagaa ctgaggcgcc ttaactttca aacaccgggt 2821 atggctagcc atcctccaat acccatcttg gaacttgcag accacattga aagattgaaa 2881 gcaaatgaca acttgaagtt ttcccaggaa tatgagtcaa ttgaccctgg ccagcagttc 2941 acttgggaac attcaaactt ggaagtaaac aaaccaaaga atagatacgc gaatgtaatc 3001 gcatatgatc attcccgggt tctcctatca gctatagaag ggatcccagg aagtgactat 3061 gtgaatgcca actacataga tgggtatagg aagcaaaatg cctatattgc aacacaggga 3121 tctctccccg aaacatttgg ggacttttgg agaatgatat gggaacaacg gagtgccaca 3181 gttgtcatga tgacaaaact agaagaaaga tcaagggtga agtgtgacca gtattggcct 3241 agcagaggca cagaaaccca cggactcgtt caagtaacgc tgcttgatac tgtggagctg 3301 gccacatatt gtgttcgaac atttgcactt tacaagaatg gttcaagtga gaagagagaa 3361 gtgagacaat tccagttcac cgcctggcct gatcatggtg ttccagaaca ccctacacct 3421 tttctagctt tcttacgtag agtcaaaacc tgtaaccctc ccgatgctgg tccgatggtt 3481 gtgcactgca gtgcgggagt tggccggact ggttgcttca tcgtcataga tgccatgtta 3541 gaaagaataa agcatgaaaa aactgtagat atttatggcc atgtaacttt aatgagagcc 3601 cagaggaact atatggttca aacagaagac caatacatct ttatccatga tgcactgtta 3661 gaagcagtga cttgtggaaa taccgaagtg ccagctagaa acttgtatgc ctacattcag 3721 aagctgacac aaatagaaac gggagagaat gtcacaggaa tggagctcga atttaagcgt 3781 ctagccagct caaaagctca cacctcaagg tttatcagtg ccaatcttcc atgtaataaa 3841 ttcaaaaatc gccttgttaa tattatgcca tatgaatcca caagggtatg cctgcagcct 3901 atccgtggag tagaaggatc tgattacatc aatgccagtt ttattgatgg atacagacaa 3961 cagaaagcct acatcgctac ccaggggccc ttggcagaga ccactgaaga cttctggcgg 4021 atgctctggg aacacaattc caccatagtt gtgatgctca ccaagctgcg tgaaatgggc 4081 agagagaaat gtcaccaata ctggccagca gaacggtctg caagatacca gtactttgtt 4141 gtagatccca tggctgagta caacatgcca cagtatatcc taagggaatt caaggtcaca 4201 gatgccaggg acggccagtc ccgaacagta aggcagttcc agttcactga ctggccagag 4261 caaggagtgc caaagtccgg agaaggattt attgacttca tcggccaagt ccataaaaca 4321 aaagaacagt ttggccaaga tggacccatt tcagtccatt gcagcgcggg cgttggaaga 4381 actggagtct tcataacgct aagcattgtt ttggaaagaa tgagatatga aggagttgta 4441 gatatcttcc agactgtcaa aatgttaaga acacaacgac cagctatggt acagacagag 4501 gatcaatatc agttttccta tcgtgccgca ctagagtacc tgggcagctt tgaccactat 4561 gcaacgtaga aacccctgac ccattctgga tttttactac aggcccttca atatccatgg 4621 agtctcttct gagccataca gggcacttga gaagtccttc ttaacttcta gctaacaact 4681 acttagtggg actattacac acaaaacaaa ttaaaaacaa attattccag gtggaccaag 4741 aattcacagt ttaataatct aacctgaaaa ataatgaaga gaatcctgac tgatgaggca 4801 tctgaaggat tttatttaca gatacctcaa ggattcaaaa tcaagggaag aagaaatcac 4861 agcaaagaac caccatctta ttcaggattg cttgaaaggt gcaaggagaa attgccagaa 4921 tgctgcagtt cagcacaaga tatgtgctgg tgtggcttct cacaatgaaa cggactctgc 4981 tttgacatcg ccccttccca ccatactgct cataataaca ttttaggggc caaggggag //