LOCUS BC100446 2134 bp mRNA linear ROD 02-DEC-2006 DEFINITION Mus musculus syntaxin 1A (brain), mRNA (cDNA clone MGC:118258 IMAGE:6595634), complete cds. ACCESSION BC100446 VERSION BC100446.1 KEYWORDS MGC. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2134) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2134) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Michael Brownstein cDNA Library Preparation: Michael Brownstein / Ted Usdin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 70 Row: a Column: 7 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 15011852. FEATURES Location/Qualifiers source 1..2134 /organism="Mus musculus" /mol_type="mRNA" /db_xref="taxon:10090" /clone="MGC:118258 IMAGE:6595634" /tissue_type="Brain, mouse" /clone_lib="NIH_MGC_144" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..2134 /gene="Stx1a" /gene_synonym="HPC-1" /db_xref="GeneID:20907" /db_xref="MGI:MGI:109355" CDS 45..911 /gene="Stx1a" /gene_synonym="HPC-1" /codon_start=1 /product="syntaxin 1A (brain)" /protein_id="AAI00447.1" /db_xref="GeneID:20907" /db_xref="MGI:MGI:109355" /translation="MKDRTQELRTAKDSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFI DKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ EEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTT TSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLETSIRELHDMFMD MAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILG IIIASTIGGIFG" BASE COUNT 468 a 612 c 605 g 449 t ORIGIN 1 gacttactcg gttgcagccg gcgcctactg ccactcccgg gagcatgaag gaccgaaccc 61 aggagctccg cacggccaag gacagcgatg acgacgacga tgtcactgtc actgtggacc 121 gagaccgctt catggatgaa ttctttgaac aggtggaaga gatccggggc tttattgaca 181 agattgccga aaacgtggag gaggtgaagc ggaaacacag cgccatcctg gcctccccga 241 accccgatga gaagacaaag gaggaactgg aggagctcat gtcggacatt aagaagacag 301 cgaacaaagt tcgctccaag ctaaagagca ttgagcagag catcgagcag gaggaaggtc 361 tgaaccgctc atcagccgac ctgaggatcc ggaagacgca gcactccacg ctgtcccgaa 421 agtttgtgga ggtcatgtcc gagtacaacg ccactcagtc agactaccga gaacgctgca 481 aagggcgcat ccagaggcag ctggagatca ccggccggac cacgaccagt gaggaattgg 541 aagacatgct ggagagtggg aaccctgcca tctttgcctc tgggatcatc atggactcca 601 gcatctcgaa gcaggccctc agtgagatcg agaccagaca cagtgagatc atcaagctgg 661 agaccagcat ccgggagctg cacgacatgt tcatggacat ggccatgctg gtggagagcc 721 agggggagat gattgacagg atcgagtaca atgtggagca cgccgtggac tacgtggaga 781 gggccgtgtc agacaccaag aaggccgtca agtaccagag caaggcgcgc aggaagaaga 841 tcatgatcat catttgctgt gtgattctgg gcatcatcat cgcctccacc atcgggggca 901 tctttggata gaaaccaccc cacccactgc tccattctgg atgggtctcc ctgaggaggc 961 ccctggctgc tgcacctagc tgggttgccc tccccactcc tgccttctgg ctgggagtcc 1021 ttttccctcc catcccacac tgctccctct ctgccatgag gctcccgtcc ccaccaccct 1081 gccccaagcc gtgtcgtgtg catgatcttg tgacagtgtg tgtctgtaca ggaggcagag 1141 tcgggagcag gattgggaac agccagagtg gctgggtaca ggccagtgcg gggcaagact 1201 cgggccctgg ccaggtctgc ctttcttcag cctggggtct acacttccct gggactcagg 1261 ctcctttctg gaccccaacc ttgccctcac ttgtcccgtc ctctggcttc tccagctctt 1321 cccaccatgc caaggcacct ggaaggtggg gaccagctgg tcacatggtg ctgcttttca 1381 ggttaggggt ggggatagct cagcactgag tctttgttag ctgccccttg cccggaggct 1441 cagggtgcca cggctgcggg tgttaggagc acctagtacc ctctctttgg gcaaagcctg 1501 acagtgtctc tggccctggg agtcatgttc ctgggctggg cctgagccta gtgacccttt 1561 actaagaagc ttagtggtgt catctccagc cttgctttga gttggaggga tggagcaggc 1621 catagtccta acaggcatgg taagttgtgg ccagagttgc atgttgggga cagcagttcc 1681 ctgcgccctt tatgctctga aagccaggtg tcactttggg cctgtagtct caccctgccc 1741 cgtctcccat tgatgtgcca cgtggtatca ggtgtactgg atgcagtatt cagcagccag 1801 ctggggaggg ggctccccac ttcccccctt gccatcttgg ggcttctcag agtcaaaact 1861 gtaccccctg ccccaggacc cctttctcgc ccacaggcaa ggagtatgca tgcgagtgca 1921 tgcagcggga gctggggccg tgtctgtgtg ccccctttcc ctcagctttg ctcctgccca 1981 gtgactgtga ccactgtccg tgctgccttc tcacggccac ctccctttac cccttcacca 2041 aaggtcttgg tacaaccagc tgcccatttt gtgagatttt tatgtagaat aaacatttgt 2101 atccgaaaaa aaaaaaaaaa aaaaaaaaaa aaaa //