LOCUS BC100140 2510 bp mRNA linear ROD 18-MAR-2009 DEFINITION Rattus norvegicus zinc finger protein 394, mRNA (cDNA clone MGC:114256 IMAGE:7442414), complete cds. ACCESSION BC100140 VERSION BC100140.1 KEYWORDS MGC. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2510) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2510) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Josef Lazar, Dr. Howard J. Jacob, Medical College of Wisconsin cDNA Library Preparation: Open Biosystems cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 227 Row: m Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21902532. FEATURES Location/Qualifiers source 1..2510 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /clone="MGC:114256 IMAGE:7442414" /tissue_type="Placenta, day 21 of pregnancy, pooled 2." /clone_lib="NIH_MGC_270" /lab_host="DH10B" /note="Vector: pExpress1" gene 1..2510 /gene="Znf394" /gene_synonym="Rlzfy" /gene_synonym="Zfp99" /gene_synonym="Zkscan14" /db_xref="GeneID:252860" /db_xref="RGD:628654" CDS 165..1775 /gene="Znf394" /gene_synonym="Rlzfy" /gene_synonym="Zfp99" /gene_synonym="Zkscan14" /codon_start=1 /product="zinc finger protein 394" /protein_id="AAI00141.1" /db_xref="GeneID:252860" /db_xref="RGD:628654" /translation="MAAGSGVAPPPLGVGLCAVKVEEDSPGSQEPSGSGDWQNPETSR KQFRQLRYQEVAGPEEALSRLWELCRRWLRPELRSKEQIMELLVLEQFLTILPQELQA YVRDHCPESGEEAAALARTLQRALDGASLQSFATFKDVAESLTWEEWEQLAAARKGFC RESTKDPGSTVGPGLETKAVTTDVILKQEMSKEAESQAWLQEVSQGKVPVFTKCGDTW EDWEERLPKAAELLPLQSSPEEQGRTAIPHLLGVSKDESDSKDNEFGNSGSLVLGQHI QTAEGLVTNGECGEDHKQGLHAKCHTVKPHSSVDSALGLLESQRHFQEGRPYKCDSCE KRFRQRSDLFKHQRTHTGEKPYQCQECGKSFSQSAALVKHQRTHTGEKPYACPECGEC FRQSSHLSRHQRTHGSEKYCKCEECGEIFHISSLFKHQRLHKGERPHKCEVCEKSFKQ RSDLFKHQRIHTGEKPYMCFVCERRFSQSATLIKHQRTHTGEKPYKCFQCGERFRQST HLVRHQRIHHNSVSGLRAEKQHGNFLSW" BASE COUNT 699 a 615 c 690 g 506 t ORIGIN 1 aaaagatcgt gtgcgcggat gtgctgtgtc tgtagtgact ttttccgggc ctcttttttg 61 ggagaaggta ccagtctgcc tcggtgaggc agaaaaagtc cgtgatgcca ttgggctttg 121 cccttctaga aaacaagctc tagctggacg gtccagaggc tccaatggct gcgggctctg 181 gggtcgcccc gccacctctc ggcgttgggc tttgtgcggt gaaagtggag gaggactctc 241 ccgggagtca ggagccctcc ggttccggag attggcagaa tcccgaaact tctcgaaaac 301 agttcagaca attgcgctac caggaagtag ccggccctga ggaggcgctg agccgacttt 361 gggagctctg tcggcggtgg ctgaggccgg agctgcgctc caaagagcag atcatggagc 421 tactggtgct ggagcagttt cttaccatcc tgcctcagga gctccaggcc tacgtgcggg 481 accactgccc tgagagcggg gaggaggctg cggctttggc gcggactctg caaagagcac 541 tggacggggc ctccctccag agctttgcaa ctttcaagga tgtggctgaa tctctgacct 601 gggaagagtg ggagcagctg gctgcagctc ggaagggttt ctgccgagag agcacaaagg 661 accctgggag cacagttggc cctggcttgg aaaccaaagc tgtgaccaca gacgtgattc 721 taaagcaaga aatgtcaaag gaggcagagt cccaggcatg gctacaagaa gtgtcccagg 781 gaaaggtccc agtatttacc aaatgtggtg atacctggga ggactgggag gaacggcttc 841 caaaagctgc cgaattgctg ccgctccaga gttctcctga agagcaagga cgcactgcca 901 tcccgcatct cctcggcgtg tccaaagatg aaagcgattc taaagataat gaatttggga 961 acagcggcag cttggtcctt ggtcagcaca tccagacagc agagggtctg gtcaccaatg 1021 gtgaatgtgg ggaggatcac aaacaaggct tacatgcgaa atgccacacg gtgaagcctc 1081 acagctctgt tgacagtgct ttggggcttc ttgagagcca gaggcatttc caagaaggca 1141 gaccttataa gtgtgatagc tgcgagaaga gattcagaca gcgctcagac ctcttcaaac 1201 accagaggac tcacacaggt gagaaaccct atcagtgcca agaatgtggg aaaagcttca 1261 gtcagagtgc tgccctggtg aaacaccagc ggacacacac aggtgagaag ccatatgcat 1321 gcccagaatg cggggaatgc ttcaggcaga gctcacacct cagtcggcat cagagaaccc 1381 atggcagcga gaagtactgt aaatgtgagg agtgtgggga gatctttcat atctccagct 1441 tatttaaaca tcagagactg cataaagggg agagaccaca caagtgtgaa gtctgtgaga 1501 agagctttaa acagcgctca gacctcttta agcaccagag aatccataca ggagagaagc 1561 cctacatgtg ctttgtctgt gagagaagat tcagtcagag tgcaaccctc attaaacacc 1621 agcgaactca cactggagaa aaaccttata aatgttttca atgtggcgaa agatttagac 1681 agagtacaca ccttgtccga caccaaagaa tccatcacaa ttcagtctct gggcttaggg 1741 cggagaagca acatggtaac ttcctgagct ggtgaccctc tggatgcaaa gaatggaaat 1801 gccccattcg cctagcgcac tgacccatcg agggagaaat tgacccctcc acagctgcag 1861 tttatgcgcc aggtacaact agcccagtgg cagaaaacac tgccacagcg gcggacctgg 1921 aacatcgtga cacccccccc cacccccccc cgggcatcgg ggccctggtg ttagctattt 1981 atggttacac cttctactca gtggcccagg aacatttcct tgatgagctg gaagatgaag 2041 ccaaagatgc ccgagcccga gctcttgaga gagagagaga gcatcaggac cctaactgta 2101 cggaccatcc tgaaactgct ggagcccccg tacatgttga atgatgcctg gtggtctcac 2161 agcatcactg gcataggaac tgtggactat gattgagccc aagaagccac agactatgca 2221 tttggctact gccaagggga gattgctcac gtcacatgca gtttgtacat ttactcagcc 2281 cctttttatt tccttgtttg agaggtatgc acgaccttgc ctttccccaa actctgtggt 2341 ttacctcttc acctcccagg ggcccaactg ttaaggggga gggtgtggcc taactgcaga 2401 gttggaacca aagtgggaaa gatagggtca agtaaagagt aataaaatga aaaaaaaaaa 2461 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa //