LOCUS BC094398 2926 bp mRNA linear VRT 09-MAY-2005 DEFINITION Xenopus laevis XEXT1 protein, mRNA (cDNA clone MGC:84830 IMAGE:6322480), complete cds. ACCESSION BC094398 VERSION BC094398.1 KEYWORDS MGC. SOURCE Xenopus laevis (African clawed frog) ORGANISM Xenopus laevis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus. REFERENCE 1 (bases 1 to 2926) AUTHORS Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W. and Richardson,P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev. Dyn. 225 (4), 384-391 (2002) PUBMED 12454917 REFERENCE 2 (bases 1 to 2926) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 3 (bases 1 to 2926) AUTHORS Klein,S. and Gerhard,D.S. TITLE Direct Submission JOURNAL Submitted (22-APR-2005) National Institutes of Health, Xenopus Gene Collection (XGC), National Institute of Child Health and Human Development, 6100 Executive Boulevard, Room 4B01, Rockville, MD 20892-7510, USA REMARK NIH-MGC Project COMMENT Contact: XGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Wellcome/CRC Institute cDNA Library Preparation: N. Garrett, P. LeMaire, A.M. Zorn, and J.B. Gurdon (Wellcome/CRC Institute). cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 163 Row: d Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 19909907. FEATURES Location/Qualifiers source 1..2926 /organism="Xenopus laevis" /mol_type="mRNA" /db_xref="taxon:8355" /clone="MGC:84830 IMAGE:6322480" /tissue_type="Egg, xenopus" /clone_lib="Wellcome CRC pSK egg" /lab_host="DH10B" /note="Vector: pBluescript SK-" gene 1..2926 /gene="XEXT1" /gene_synonym="Ext1" /db_xref="GeneID:399115" CDS 421..2637 /gene="XEXT1" /gene_synonym="Ext1" /codon_start=1 /product="XEXT1 protein" /protein_id="AAH94398.1" /db_xref="GeneID:399115" /translation="MQAKKRYFTLLSAGVCLALLCYLGGVHLRAAARSKRSGDGIYRS PAQPWPLLPDTSLLPFTQEEGGDPGSQVSPRQKRDGNSSIYKGKRCRMESCFDLSLCR RNGFKVYIYPQQKGDKLSDSYQHILAAIETSRFYTSDPSQACVFVLSLDTLDRDQLSP HYVHNLKSKVQNLHLWNNGRNHLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENF RPNFDVSIPLFSKDHPRTGGDKGFLRFNNIPPMRKYMLVFKGKRYLTGIGSDTRNALY HVHNGEDVVLLTTCKHGKDWQKHKDARCDKDNAEYEKYDYREMLHNATFCLVPRGRRL GSFRFLEALQAACVPVMLSNGWELPFSEVIDWNQAAVIGDERLLLQIPSTIRSIHQDK ILALRQQTQFLWEAYFSSVEKIVLTTLEIIQDRIFKHISRNSLMWNKHPGGLFALPQY SAYLGDFPYYYSNLGAKPPSKFTAVIHAVTPLVSQSQPILKLLVAVAKSQYCYQIIVL WNCDKPLPAKHRWPATTVPVIVIEGESKVMSSRFLPYDNIVTDAVLSLDEDTVLSTTE VDFAFTVWQSFPERIVGYPARSHFWDSTRERWGYTSKWTNDYSMVLTGAAIYHKYYHY LYTNYLPASLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRAS RWADPDHFAQRQTCMNTFASWFGYMPLLHSQMRLDPVLFKDQVSILRKKYRDIERL" BASE COUNT 736 a 766 c 754 g 670 t ORIGIN 1 atcgaattcc ccggggctga ggaatggaat gtgttacatt gtagcgagca gaacgttgta 61 aaaccgaact gtgcgctccg tgatatcacc gcgcgttccc tttagtaagg agttcccggg 121 gaatgcggag ccatgcaggg attcgtcagg ttaccgggct cgggcatgta gcgctgctgc 181 tgccttgtct gtgagccggc ggggaaagtt caagcacgga cacccactcc ccagctccgc 241 tatacgggaa ccttctttgc ctcccagtcc tccgccatga gggaccggcg gggagaaagt 301 taagtggccc catgcgctcg gggagtcggg gggaaaggaa cgagagtgcg acgggaagat 361 ggcggagcgg agctgagggg ggccctccag tgtcggtatc cgagcaccct gaccggacac 421 atgcaggcga aaaaacgcta cttcaccctg ttgtccgccg gcgtctgcct cgccctgctc 481 tgctacctcg ggggcgtgca cttacgggca gcagcgcgga gcaagaggag cggggatggg 541 atttaccgga gtcccgcgca gccctggccg ctcttacccg acacctcgct gctgccattc 601 acccaggagg agggcggcga ccccggcagt caggtgtccc cccggcagaa gcgagatggc 661 aactccagca tctacaaggg caagcgctgc cgcatggagt cctgctttga cttgtccctg 721 tgccggagga atggctttaa ggtgtatatc tacccccagc agaaggggga caaactgtct 781 gacagttacc agcacattct ggctgccata gagacttcca ggttctacac ctccgacccc 841 agccaggcgt gtgtgtttgt gctcagcctg gacaccttag acagggacca gctgtccccc 901 cactatgtgc acaacctcaa gtccaaagtc cagaacttgc acctgtggaa caatggtagg 961 aatcatttaa tttttaattt atactccggc acctggcccg actacaccga ggacgtgggc 1021 ttcgacatcg gacaggccat gctggccaag gctagcatca gcacggagaa cttcaggccc 1081 aacttcgacg tctccatccc tctcttttct aaggatcatc ccaggacagg cggcgacaag 1141 ggctttctga gatttaacaa tatcccccct atgaggaagt acatgctggt ctttaagggg 1201 aagcggtacc tgacagggat agggtcggac accaggaatg ccttatatca cgtccataat 1261 ggggaggatg tggtcctgtt gaccacctgc aaacatggca aagattggca gaagcacaag 1321 gatgcacgtt gtgataaaga caacgccgaa tatgaaaagt atgattatcg tgaaatgctg 1381 cacaacgcca ctttctgcct ggtcccccgt ggccgaaggc ttggatcctt ccgctttttg 1441 gaggcactac aggctgcatg cgttccagtt atgctcagta atggatggga gttgccgttc 1501 tctgaagtga ttgattggaa ccaagcagca gtcattgggg atgagagatt attattacag 1561 attccttcta caatcaggtc tatccatcag gataaaatcc tagcacttag acagcagact 1621 cagtttttgt gggaggctta tttttcctcg gtggagaaga ttgtattgac tacactagag 1681 ataattcagg atcgaatctt caagcacata tcacgcaaca gcttaatgtg gaacaagcat 1741 cccgggggac tgtttgcgct gcctcagtat tccgcatatc tgggagactt cccgtactac 1801 tactctaatc taggtgcaaa acctccttct aaatttaccg ctgtgatcca tgctgtaacg 1861 cccctggtgt ctcagtctca accaatccta aagctgctgg ttgctgtagc aaagtctcag 1921 tactgttatc agattatagt cttgtggaac tgtgacaagc cactccctgc caaacacaga 1981 tggcctgcca ctaccgtgcc tgttattgtc attgaaggag agagcaaggt tatgagcagc 2041 cgtttcctac cttacgataa catagtcacg gatgctgttc taagccttga tgaggacacc 2101 gtgctttcaa ccacagaggt ggattttgcc tttacagttt ggcagagctt tcctgaaagg 2161 attgtggggt acccagcacg gagtcacttt tgggacagca cgagggagcg atgggggtac 2221 acatccaagt ggactaatga ctattccatg gtactaacag gagctgctat ttaccacaag 2281 tactatcact acctttacac aaattacttg cctgccagtc tgaaaaatat ggtggaccaa 2341 ttagccaatt gtgaagatat cctcatgaac ttcctggtgt ctgctgtgac taagctgccg 2401 ccaatcaaag tgacgcagaa gaagcagtac aaggagacca tgatgggcca gacctccaga 2461 gcttcccgat gggcagaccc ggaccacttt gcccagagac agacctgtat gaacacgttt 2521 gccagctggt ttggctatat gccgctcctt cactcacaga tgagactcga ccctgtcctt 2581 ttcaaagatc aggtctccat cctaaggaag aaatatcgag acattgagag actttgagac 2641 acggctgagc ccccctcccc tggactgagt cccctgtgcc cagtacatat ccacaggcaa 2701 agccgccagc tgctgaacaa agacgtgagg atgaaccgta gatggagcct ggaagcccct 2761 gccctggact cctcaccccc ctgagctcgg ggcgtctcaa cactagactg tacagtttaa 2821 ttaaataatt atttttgaaa cgattgctat gcaggttaca cttttttaat gaacaaaaaa 2881 ctattaaaat cagagttgtt tcttaaaaaa aaaaaaaaaa aaaaaa //