LOCUS BC082313 4457 bp mRNA linear ROD 15-SEP-2004 DEFINITION Mus musculus cDNA sequence BC033915, mRNA (cDNA clone IMAGE:5719256), complete cds. ACCESSION BC082313 VERSION BC082313.1 KEYWORDS . SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 4457) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4457) AUTHORS Director MGC Project. TITLE Direct Submission JOURNAL Submitted (03-SEP-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Jim Lin, University of Iowa cDNA Library Preparation: M. Bento Soares, University of Iowa cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 176 Row: d Column: 8 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..4457 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /clone="IMAGE:5719256" /tissue_type="Brain, mouse 15.5 dpc" /clone_lib="NIH_BMAP_EX0" /lab_host="DH10B" /note="Vector: pYX-ASC" gene 1..4457 /gene="BC033915" /gene_synonym="mKIAA0999" /db_xref="GeneID:70661" /db_xref="MGI:MGI:2446296" CDS 372..2303 /gene="BC033915" /gene_synonym="mKIAA0999" /codon_start=1 /product="BC033915 protein" /protein_id="AAH82313.1" /db_xref="GeneID:70661" /db_xref="MGI:MGI:2446296" /translation="MLYQQEQHHQILQQQIQDSICPPQPSPPLQVACENQPALLTHQL QRLRIQPSSPPPNHPSNHLFRQPSNSPPPVSSAMITSHGATSPSQFQGLPSHGAIFQQ QPENCSPPPSVALTCLGLQQASQSQPVTIQLQEPVDMLSNMAGTAAGSAGRSIPISPS ASQIQIQHRASLMAPFSYGHRPLSKQLSADSAEAHSLNMNRFSPANYDQAHLHPHLFS DQSRGSPSSYSPSTGVGFPPTQALKVPPLDQFPTFPPSAQQQPPHYTTSALQQALLSP TPPDYPRHQQVPHILQGLLSPRHSLTGHSDIRLPPAEFAQLIKRQQQHRQQQQQQQQQ QEYHELFRHMNQGDAVSLAPSLGGQNMTEQQALSYQNADSYHRHHTSPQHILQIRAQD CISQGPSPTPTHGYAHQPPLMHSESMEEDCLCEGLKEGFPDKSSSTLTKGCHNSPLLL CTSGPGDPEPLLGTVSQARELGIHPYGHQPTATTFSRNKVPSRESVLGNCLERSSPGQ AMELPDHNGLGYPVRPLVSEHLRSRTLQRHHTIQNSDDAYVQLDTLPGMSLVAGKALS SARMSDAVLSQSSLMGSQQFQDEEDEECGVSLGHEHPGLGDGSQHLNSSRYPATCVTD IMLSHKHPEVSFSMEQAGV" BASE COUNT 1064 a 1329 c 1035 g 1029 t ORIGIN 1 aggtacttgg caaataggtc caaaaggcac acactggcca tgaccagccc gacagctgag 61 atcccaccgg acctgcaacg gcagctagga caacagtctt tccgttcccg ggtctggcct 121 cctcacctgg tacctgacca gcatcgctcc acctacaagg actccaacac cctgcatctc 181 cctacggagc gtttctcccc cgtgcgccgg ttctcagacg gggctgcaag catccaggcc 241 ttcaaagctc acctggaaaa aatgggcaac agcagcagca tcaagcagtt gcagcaggag 301 tgtgagcagc tgcagaagat gtacgggggc aggtggatga gaggaccctg gagaagaccc 361 agcagcagca tatgttgtac cagcaggagc agcaccatca gatcctccag cagcaaatcc 421 aagattctat ttgtcctcct cagccctccc cacctcttca ggttgcctgt gaaaaccaac 481 cagccctcct cacccaccag ctccagaggt taaggattca accttcaagc ccacccccca 541 accatcccag caaccatctc ttcagacagc caagtaacag tcctcccccg gtcagcagtg 601 ccatgatcac gtctcacggt gctacgtctc cctcccagtt tcaaggctta ccctcccatg 661 gtgcaatctt ccagcagcaa cccgagaact gttccccgcc tcccagtgta gcactaacct 721 gcctgggcct acagcaggct agccagtcac agccagtgac tatccagcta caggagccag 781 ttgacatgct cagcaacatg gccggaaccg cggcaggctc tgcagggcgg agcatcccca 841 tcagccccag cgccagtcag attcagatac agcaccgagc cagcctaatg gctcccttca 901 gctatgggca ccggcccttg tccaagcagc tgagcgctga cagtgcagag gcccacagct 961 tgaacatgaa tcggttctcc cctgccaact acgaccaggc gcatttacac ccccatctgt 1021 tttcggacca gtcccgaggt tcccccagca gctacagccc ttcaacagga gtggggtttc 1081 ctccaactca agccctgaaa gttcctccgc ttgaccagtt ccccactttc cctcccagtg 1141 cccagcagca gccaccccac tataccacgt cagcactaca gcaggccctg ctatctccta 1201 caccgccaga ctatccccga caccagcagg ttccccatat ccttcaagga ctgctctctc 1261 cccggcattc actcaccggc cactcggaca ttcggctgcc tccggcagag tttgcacagc 1321 tcatcaaaag gcagcaacag catcgacagc agcagcagca gcagcagcag caacaagaat 1381 accatgaatt gttcaggcac atgaaccaag gggatgctgt tagcctagct cccagcctcg 1441 ggggacagaa tatgacagag caacaggctt tatcttatca aaatgctgac tcgtaccacc 1501 gccaccacac cagcccccag catatcttac agatcagggc gcaagattgt atctcacagg 1561 gtccctcgcc cacccccacc catggctatg cccatcagcc accactaatg cattcggaga 1621 gtatggagga agactgcttg tgtgaggggc tcaaggaggg cttcccagac aagagctcaa 1681 gcacactgac caaaggttgc cacaacagcc ctctgctctt gtgtaccagt gggcctgggg 1741 accctgagcc tttgctggga actgtgagtc aggcccggga gctggggatc catccctacg 1801 gacaccagcc aactgccacc acgttcagta gaaataaggt gcccagccga gagtctgtcc 1861 tagggaactg cctggaaaga agttctcctg gacaagcaat ggagctgccg gatcacaacg 1921 gccttgggta cccagtacgg cccttagtca gtgagcacct caggtcccgg acgctccaga 1981 gacaccacac gatccagaac agcgacgatg cctatgtaca gctggatacc ttgccaggaa 2041 tgagcctggt ggcaggcaag gcgctgagct ctgcccggat gtcagatgca gttcttagtc 2101 agtcttcact catgggcagc caacagtttc aggatgagga agatgaagaa tgtggggtga 2161 gcctgggcca cgagcatcca ggcctgggtg atggcagcca gcatctcaac tcctctcgct 2221 atccagctac gtgtgttaca gacatcatgc tcagccacaa gcacccagag gtctccttca 2281 gcatggagca agccggcgtg tagcaagata tggaaagttc gagtacagct ccaggaggag 2341 gctgagtcta gaccaataga ccaacagtgt ccaacagcgc cgcaccgctc ctccgtctgt 2401 gtctccacca caacagtgca gctccttccc ctacactagg caccagtagg ccggcgcttg 2461 ggttgcgagg gacatttgcc atgtttgctt gtatgaccaa ggcaccaagg aaataaacag 2521 gaaatcagtg tcctccatct ttcatgagcc agcatctggt gtgcttgagt tgagttctgc 2581 tgttaggagg tttgcttgtg ttttgttttg gaaattttcc tttggagata acttattctc 2641 tttgccttgc ccacccctac ccccttgagc atattccccc ccccctctcg ttttcaccta 2701 ccatttctga ggtagatgaa ccagaggtta gtattcaggg gctgaacctc aggaccctcc 2761 cttccacagc ctgtctcaga ccagactctc tccctctgcc ccggtctacc aggaacaaat 2821 gctagaccgg agcttggtgg ccaagaaaag gagaggaggg ggcagtggcc cctgcctttg 2881 gagattggaa cagaagaaaa aactgagcct gggatctggc agaatctcct gctggcctct 2941 actagaatcc tatctggccc agcagaattc catcagatcc cagcacaggc cggatggcct 3001 ggtgctgaag gtttgccatc cagaatagct cagtgtaggc ccctctggtg tgtggtccag 3061 ttcccctcca gtcaccaact ggttccccct catgagtgaa cacccaggag tggtgcactg 3121 tgctgtttgt gtgatctcca ttcttattct ctactgcgtt gtaaaaaggg ccgttggtcc 3181 atttgtgtgc acacgtatga gtgtgtacat gcccttccct gcggcctctt tgtcacagac 3241 aagaattgga ggctgtactg ggtctcttaa ccttctcctc tccccagcat cctcggcccc 3301 tatattttaa ttcttgatca tgtaggaatt gtttttgata aatgttgata ttattgttat 3361 tattgttatt attaataaag acaaaaagga ttttgtttat ttgtttaaaa gagaaatgtt 3421 taaccagatt ctgtgctgtt gaactgtggc ttgcaacttc tgtttgaagt gttttccttg 3481 gctttggcat cgtgagccac tctcctgtgc cagcagcgga tgcagtggcc tcccttcccc 3541 agccgaagca gcacataggc agtggctact gtccttgtca cttcctttct ctctgcagtc 3601 agaaaccaaa gtctggggcc aaacgaggcc ggcccggctt ctcttctggt cttcaaaacc 3661 agagagggat ggtccctgct ctgactccca gccctcattt ctgagagcca ggggccacca 3721 acctctgagt atgcacagaa gaaagccgct gcctgccatg gcatctggac attaccagca 3781 gggtccctag ccattttatc cttccgcacc aaccctgaaa gcttgcctct ttgaacaaat 3841 ccattgtctc ttgaatggat ttgttttcaa tgtgagagct tggctgggga cctgtttcgt 3901 ggtcccatgt cctccaattt cccctccact tcaggtgtca ctaattacta gccagaagat 3961 gtctgactcc caagaaagct tgacaagcca ttgtcagctt ccaagctcag tccagctctg 4021 atactccagc cccgccctgc tgctccccac gctcagcctg acctgtttac gtggtactgg 4081 attgatggaa gagcaggcac caccctccag agccacccag acgaaagcca gtgagcctat 4141 taaccgtgcc atcttgcgaa ctattttcaa gatcaccatt gctttatatt gtagtaacca 4201 atatgcgcag tatatgttga atgtatatga atctactttg ctatttctgt tctttgaaaa 4261 tgtaagaagt atttttcctt tctcatttct gttgatctaa aaatgataat aataataata 4321 atctccagat tcaagttgct aagagctttt gtccttgttt gtgtgggaca tctacaactt 4381 agtgacttgg ttggactgta ggaggttgtg gaaataaaaa cctgattatg tactaacgct 4441 gaaaaaaaaa aaaaaaa //