LOCUS BC081848 1693 bp mRNA linear ROD 12-OCT-2007 DEFINITION Rattus norvegicus cytochrome P450 IIA1 (hepatic steroid hydroxylase IIA1) gene, mRNA (cDNA clone MGC:93632 IMAGE:7135880), complete cds. ACCESSION BC081848 VERSION BC081848.1 KEYWORDS MGC. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1693) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1693) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-SEP-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Howard Jacobs cDNA Library Preparation: Express Genomics cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 186 Row: a Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 6978738. FEATURES Location/Qualifiers source 1..1693 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /clone="MGC:93632 IMAGE:7135880" /tissue_type="Testis, rat (Brown Norway)" /clone_lib="NIH_MGC_238" /lab_host="DH10B" /note="Vector: pExpress1" gene 1..1693 /gene="Cyp2a1" /gene_synonym="RATCYP2A1" /gene_synonym="Shdl" /db_xref="GeneID:24894" /db_xref="RATMAP:34567" /db_xref="RGD:2463" CDS 10..1488 /gene="Cyp2a1" /gene_synonym="RATCYP2A1" /gene_synonym="Shdl" /codon_start=1 /product="cytochrome P450 IIA1 (hepatic steroid hydroxylase IIA1) gene" /protein_id="AAH81848.1" /db_xref="GeneID:24894" /db_xref="RATMAP:34567" /db_xref="RGD:2463" /translation="MLDTGLLLVVILASLSVMLLVSLWQQKIRGRLPPGPTPLPFIGN YLQLNTKDVYSSITQLSERYGPVFTIHLGPRRVVVLYGYDAVKEALVDQAEEFSGRGE QATYNTLFKGYGVAFSSGERAKQLRRLSIATLRDFGVGKRGVEERILEEAGYLIKMLQ GTCGAPIDPTIYLSKTVSNVISSIVFGERFDYEDTEFLSLLQMMGQMNRFAASPTGQL YDMFHSVMKYLPGPQQQIIKVTQKLEDFMIEKVRQNHSTLDPNSPRNFIDSFLIRMQE EKNGNSEFHMKNLVMTTLSLFFAGSETVSSTLRYGFLLLMKHPDVEAKVHEEIEQVIG RNRQPQYEDHMKMPYTQAVINEIQRFSNLAPLGIPRRIIKNTTFRGFFLPKGTDVFPI LGSLMTDPKFFPSPKDFDPQNFLDDKGQLKKNAAFLPFSTGKRFCLGDGLAKMELFLL LTTILQNFRFKFPMKLEDINESPKPLGFTRIIPKYTMSFMPI" BASE COUNT 477 a 414 c 416 g 386 t ORIGIN 1 ctggccacta tgctggacac aggactgctt ctggtggtca tattggcctc cctgagcgtc 61 atgctcttgg tgtccctctg gcagcagaaa atcaggggga gattgcctcc aggacccact 121 cctttgcctt tcattggaaa ttatctgcag ctgaatacaa aagacgtata cagttccatc 181 acacagctca gtgagcgcta tggtcctgtg ttcaccatcc accttgggcc tcgccgggtt 241 gtggtgcttt atggatacga tgcagtcaaa gaggctttgg tggaccaagc tgaggagttc 301 agtggacgag gcgaacaggc tacctacaat acactcttca aaggctatgg cgtggcattc 361 agcagtgggg agcgggcaaa acaactcagg cgcctctcta tagccacatt gagagatttt 421 ggtgtgggca agcgtggtgt agaggagcgt atcctggagg aggcaggcta tttgatcaag 481 atgttgcagg gcacttgtgg agcccccatt gaccccacca tctacctgag caaaacagtc 541 tccaatgtta ttagctccat tgtcttcggg gaacgcttcg actatgagga cacggagttc 601 ctgtcactgc tgcagatgat gggtcaaatg aacagatttg cagcttcacc cacagggcag 661 ctctatgaca tgttccattc agtgatgaag tacctgcctg gaccacagca acagatcatc 721 aaggttactc agaaactgga agacttcatg atagagaaag tgaggcagaa ccatagtacc 781 ctggacccca attccccaag gaacttcatt gactcctttc tcatccgcat gcaagaggag 841 aaaaatggca attcagagtt ccacatgaag aacctagtga tgacaacact aagcctcttc 901 tttgctgggt ctgagacagt cagctccaca ctacgctacg gcttccttct actcatgaag 961 catccagatg tggaggccaa ggtccatgag gaaattgagc aggtgatcgg caggaaccga 1021 cagcctcagt atgaggacca catgaagatg ccctacaccc aggctgtgat caatgagatc 1081 caaagatttt ctaacttggc tcccttgggc attcctcgaa ggattatcaa gaacacaacc 1141 ttccgtggct tcttcctccc caagggcacc gatgtgttcc ctatattagg ttctctgatg 1201 acagacccaa agttcttccc tagccccaaa gacttcgacc cccagaactt cctggatgac 1261 aagggacagt tgaagaaaaa tgctgctttc ctccctttct ccactgggaa gcgattctgc 1321 ttgggagatg gcctggctaa gatggagctc ttcctgctgc tcaccactat tttacagaac 1381 ttccgtttca agttcccaat gaaactagaa gacatcaacg agtcccccaa acccttgggg 1441 tttaccagga tcataccaaa gtacaccatg agcttcatgc ccatctgatt ctgagttgaa 1501 tcaaggtggg gcaagaggga gagagagcct gaagtggggc cagggtgcag gtggagagaa 1561 caggggaggt gaagatgagg gttaagaagg gaccacaccc atggaagaaa cacaaaagac 1621 ttttcacttt ggtaaaattg taacagtcct aataaaaaga aagaaataaa aaaaaaaaaa 1681 aaaaaaaaaa aaa //