LOCUS BC072773 4051 bp mRNA linear VRT 19-JAN-2018 DEFINITION Xenopus laevis Xpat protein, mRNA (cDNA clone MGC:79925 IMAGE:5155227), complete cds. ACCESSION BC072773 VERSION BC072773.2 KEYWORDS MGC. SOURCE Xenopus laevis (African clawed frog) ORGANISM Xenopus laevis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus. REFERENCE 1 (bases 1 to 4051) AUTHORS Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W. and Richardson,P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev. Dyn. 225 (4), 384-391 (2002) PUBMED 12454917 REFERENCE 2 (bases 1 to 4051) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 3 (bases 1 to 4051) AUTHORS Klein,S. and Strausberg,R. TITLE Direct Submission JOURNAL Submitted (07-JUN-2004) National Institutes of Health, Xenopus Gene Collection (XGC), National Institute of Child Health and Human Development, 6100 Executive Boulevard, Room 4B01, Rockville, MD 20892-7510, USA REMARK NIH-MGC Project REFERENCE 4 (bases 1 to 4051) AUTHORS Klein,S. and Strausberg,R. TITLE Direct Submission JOURNAL Submitted (19-JAN-2018) National Institutes of Health, Xenopus Gene Collection (XGC), National Institute of Child Health and Human Development, 6100 Executive Boulevard, Room 4B01, Rockville, MD 20892-7510, USA REMARK Sequence update by database staff to remove vector contamination COMMENT On Jan 19, 2018 this sequence version replaced BC072773.1. Contact: XGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Martha Rebbert, Steven L. Klein, Ph.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield, Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin, Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu, Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 153 Row: i Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 3021601. FEATURES Location/Qualifiers source 1..4051 /organism="Xenopus laevis" /mol_type="mRNA" /db_xref="taxon:8355" /clone="MGC:79925 IMAGE:5155227" /tissue_type="Embryo, stage 10" /clone_lib="NICHD_XGC_Emb1" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..4051 /gene="xpat-A" /db_xref="GeneID:394273" CDS 87..968 /gene="xpat-A" /codon_start=1 /product="xpat-A protein" /protein_id="AAH72773.1" /db_xref="GeneID:394273" /translation="MALKAEDSFDIYSQLIQSFCRYAENTTVSESQSPAFNAQKEFQT CQDHACCTHSEAHTHILMQQWQLLEEQWEYIDHLKTDVAALKQLLHGFMNSLSGTDSG MEGTNHFLPPHQNPTLLKDEEIVASALNRPSVDINGFEENITTGAQIHAAFTKSPKKM PATSTPRKSEVLWSCSPTLATDGYFMLPDIILNPLDGKKLVSMLRSSNYEPHRFAELL FQHHVPHSLFQLWANKVNFDGSRGKLGLPRNLMIDILHQTSKRFVLGPKEKRKIKTRL NLLLRTRQDRAWWDVGL" BASE COUNT 1218 a 804 c 861 g 1168 t ORIGIN 1 gaatcctcct tttgctgctg agaatgagaa ttttagatgt gttcaaattt aaaggctttc 61 aggatagccc agactagaga atctctatgg ctttgaaggc agaagactct tttgatattt 121 actcccagtt gatccagagc ttctgcagat atgctgagaa cactaccgtt tcagaaagcc 181 aatccccagc tttcaatgca caaaaggaat tccaaacttg tcaagaccat gcatgctgta 241 cacactctga agcccatacg cacattttga tgcagcagtg gcagctctta gaagaacagt 301 gggagtacat tgaccatctg aagaccgatg tagcagccct gaaacagttg ctgcatggtt 361 tcatgaactc attaagtggc actgacagtg gcatggaggg tacaaatcat tttcttcctc 421 cccaccaaaa cccaactttg cttaaagatg aggaaattgt tgcaagtgct ctaaacaggc 481 caagcgttga tatcaatgga tttgaagaga acatcactac aggtgcccaa atccatgcag 541 catttaccaa aagccccaaa aagatgcctg ccacaagcac tccacggaaa tctgaagttc 601 tgtggagctg cagtccgacc ctcgctacag atggctattt tatgcttcct gacattatcc 661 taaatcccct ggatggaaag aagctagttt ccatgctgcg cagctccaac tacgagccac 721 atcgttttgc agagcttctg tttcaacatc acgttcccca ttccctcttc caactgtggg 781 ctaacaaagt gaactttgat ggttccagag ggaaacttgg cctgcccaga aacctaatga 841 tagacatctt gcaccaaaca tccaaaaggt ttgtcttggg cccaaaggag aaacggaaga 901 ttaagacaag gttgaatttg ttgttgagga cacgtcagga tagagcttgg tgggatgttg 961 gcctgtaggc caaaggttta agtttttgtt aagattttga ctgttttaag tagagtttta 1021 taaatggttt gctgtgtccg atgtaatgca ctaatttgca caaatgcact tgactggtaa 1081 gatacctgtc atgcaccaga tgttatatca catagcagag cagcaggtta ggagtgggtt 1141 tattcaccgc tttttgtttt gttttttact aattcctttc cagcaccaag atcacagatt 1201 gaatcaaaca ctgatctgta gcatgcacta atgtgttgag gagtgataag actttcacgc 1261 actgggtgtt gtatcacata acaaagcaga ttgcgaggaa tggtttcatg cacagctttt 1321 gttttggact gatttactta ttctttccac tgccacagcc tatgttaagc acatgtgtat 1381 gttctgtata atttgcacaa aggcactttg gagttattgg agtgattgat acgtttccct 1441 tcctgcacca gacactgttt catataacac aaaactctag actttgcaca ctccgtgaat 1501 acacaatcca catgcaccaa ttattcctag agaagaggat taagcatata cccctatatg 1561 taatagaagg cactaggttt gcccaggagc agtaacccat ggcaaccaat aagatgcttg 1621 catttaaatt tgtgactagt gaattctacc tgctggttgg ttgctatggg tttctgcccc 1681 tgggcaagct tggtggcttt tattacataa ccccattaga ctggtaatat gataaatact 1741 atgcaaaaga agggatggtg ctacatgttt tttaatggcc atgtctcttg ctgagtagtt 1801 gttttaacac agaacagaac ccaagtgttt tattaatgtc tatcctttct tttaaacacg 1861 tccctattgc caaaatggtt attttggcaa tagagagaac agggggatta tttcacatat 1921 gttaagacac aagtctcaag ttcattcatt ttaagcttga aagttaaaag tgccacattg 1981 ggcagtgttc tctcgcctta tattatgtca tcagccccct tatgcttctg atgggaaggt 2041 aacggcacat actgaaatgt catatccctg aaatactcat agtgcagggc cttcatggtg 2101 acacaattat tagcattggt atcttgtaat attgtagcaa tgggctgcat agtgatacag 2161 tggtttgaat ttttatgagg cactttcttc agcccccctg ggtgttagaa aacctcagcc 2221 tccatggaag tgaaagttaa gggcatcaac aatcaccacc attggtcata gcctgagagg 2281 tgaaaaccag aagcattatc tttgtaaaca tgaataggag agacagcaga aaagaaggaa 2341 agattcatca ttgtcttttt ttagtctttg ttacaacctg taggtactgt ctgccttatc 2401 ttatgttctg aaggttatca gtaatgacag gccctaggaa ccagcttgtg tattacattc 2461 catcgtatct agtggtgatc gtgatcatca ttctgctgga caggccgtat ctacaagata 2521 ctccaccaca ggccatctgg gacatggaaa cgctaaaaaa agaagtaaaa gctcacatgg 2581 tagagattca tacgcagtta ttgggcaaca gcttggtcct gatggctgaa acaggtggaa 2641 atatgcataa gagcagtaaa ccatataaac cctagacata tgctttatct agcctagaga 2701 aattgaccgg ttgattggtc agtcaccatc aatttctggt ggagtgagaa cttacacttc 2761 ctttaggggc ctagagtatc tatggtttat atgaaaacaa caggcctagc agagtgaatg 2821 ccttctatca ggtccaggta ctgaaacaga gcttgcgtaa tttagtgatg tcatcatatg 2881 atgtcattgc cctctgagag ctcctgacat gtctaatggg ttttaaagat acagatcatt 2941 gttgatttga taaaacacca ctaccaccct cttcctgtgc acaaatttgt gtctctttaa 3001 gttattatat aaatggcgat ccccaagtag tgatattggt ggtatgtaga tgcagagcat 3061 ctcgttcagg ttctctgcta aggctgcccg tccttgtcca ttccctcctt ctccagtccc 3121 atgaccatca agaatgtaac gatggataca gcagacccag ctgggggtta gtagaggcaa 3181 gcagaattat aggggagggg gggctggtgg tggtggctct gattgttcaa ttttactatt 3241 tgtgggcaaa atagatagtg ttctttaagg ttttgggcaa agcccatttt ctttcccatt 3301 tatcttgcca agttacagta agttgtctca cagtgcctgg catataagct gtaggaaaga 3361 gatttgtgag caagggtttg cacccctgga cttttcatgt gcatgccagg tggtacattc 3421 caatgtatgc catgatactt cttgattttt attttattgg ttccattttt ccctgcaggt 3481 ctgtaccaat gtagaccagt gatgaatgca taagaaatgg gttgactgaa ttctgtcccc 3541 tgggtataga gccacaggaa tgagagcaat taacacaagt aattccatag ggaagaatat 3601 gctggcgcac aacataaggg cagttgtatg aggaaaagct cctgggtggc agttactatg 3661 tttgatcctg ctttattctg gtagtttctc ctttaaaaag tgcagtaacc tctgcctgtg 3721 gtgctgcctc agtcacttaa ttatgttgtg tgaagttctg cagaagtcat taaaaaaacc 3781 ccagaaaaat agcatctagt gggtgaaaaa cagagcatca agctgagcag cggattccct 3841 ttagagtaag aaagcaaagt ctgaaaagtt gacccgtaat aattgatagc gtaattatca 3901 cttgtttatt caaatgctgt acatcctagt cttcatttac cataataaag aacatacaga 3961 catgggaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 4021 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a //