LOCUS BC065698 4589 bp mRNA linear ROD 15-JUL-2006 DEFINITION Mus musculus gene model 996, (NCBI), mRNA (cDNA clone MGC:69896 IMAGE:6825178), complete cds. ACCESSION BC065698 VERSION BC065698.1 KEYWORDS MGC. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 4589) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4589) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (26-JAN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Jim Lin, University of Iowa cDNA Library Preparation: M. Bento Soares, University of Iowa cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 132 Row: k Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..4589 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /clone="MGC:69896 IMAGE:6825178" /tissue_type="Brain, mouse, 13.5,14.5,16.5,17.5 dpc" /clone_lib="NIH_BMAP_FY0" /lab_host="DH10B" /note="Vector: pYX-ASC" gene 1..4589 /gene="Gm996" /gene_synonym="MGC69896" /db_xref="GeneID:381353" /db_xref="MGI:MGI:2685842" CDS 203..3028 /gene="Gm996" /gene_synonym="MGC69896" /codon_start=1 /product="gene model 996, (NCBI)" /protein_id="AAH65698.1" /db_xref="GeneID:381353" /db_xref="MGI:MGI:2685842" /translation="MTRTDPPDLLVSTVYQDIKVVDPGLTSKRQPCERSVARPAAPTP FNKRHCRSFDFLEALDEPTMETHPEPPPPEPAPPRARPRDSEPRRRTRSKSAPRASQG LATAPASPPVLQRRGREAQRAVRVEGSPRREPSYPALRALANELHPIKLQPQRGGPGR IAPLCATPGRCAPPEPPSGPVPHVRCRLDIKPDEAVLQHAALSRTPTPSDLYCTDPRT LYCDGPLPGPRDYLEHRSQPFTTPPGPTQFFYTEEPEGYAGSFTTSPGLPFDGYCSRP YLSEEPPRPSPRRGGSYYAGEVRTFPIQEPPSRSYYGETTRAYGMPFVPRYVPEEPRA HPGARTFYTEDFGRYRERDVLARTYPHPRSSPPWADWGPRPYRTLQVMPPPAPGPLLA SWHGGTGTSPPRLATDSRHYSRSWDNILAPGPRREDPLGRGRSYENLLGREVRDTRGS SPEGRRPPVVVNLSTSPRRYAALSLSETSLTEKGRAGESLGRNWYVTPEITITDNDLR SVDRPTAKGWELPGGRPRQPVSTVPEGPASSRQRSLEQLDELITDLVIDSRSPAQAPE PAAEGLGRQLRRLLDSRAAGPGGATLLAPSRSPPASAGSTEEPTGSGEAADASPEPSA DEDDLMTCSNARCRRTETMFNACLYFKSCHSCYTYYCSRLCRREDWDAHKARCVYGRV GSVCRHVLQFCRDSSPVHRAFSRIARVGFLSRGRGVLFLGFPSPGSADNFLRFGLEGL LLSPTYLSLRELATHAAPLGSYARELAAAGRLYEPAECFLLSVSVAVGPSAAPPGAAA RPAPRTPGPTVRKFAKVALAAGSPTRPPPARGGEPDMETLILTPPPGTAGLDEEGEAG RRAREVAFIHIQRELRMRGVFLRHEFPRVYEQLCEFVEANRRFTPTTIYPTDRRTGRP FMCMIMAASEPRALDWVASANLLDDIM" BASE COUNT 899 a 1560 c 1295 g 835 t ORIGIN 1 cagcaccaga agccttgacc atgacctgca gccaaggctg caccatcccc tatgccccag 61 gtaagccgga ccagcacgtg gggtggggtg gggtaaaggg cttggggtgc agaggaggct 121 gccctgaccg gtatctcctc ccagggcaaa atccccgaaa ggccgtgtga ctggagctgc 181 cagcctgggg acgtctttta agatgacccg cacggacccg ccggacttgc tggtgtcgac 241 cgtgtaccag gacatcaagg tggtggaccc agggctcacg tccaaacgcc agccatgtga 301 gcgatccgtg gcccggcctg ctgcgcccac gcctttcaac aagcgccact gccgtagttt 361 tgacttctta gaggcactgg acgagcccac catggagaca cacccagagc cgccacctcc 421 tgaacctgcg ccaccgcgcg cccgacccag agacagcgag cctcggcgcc gcacccgttc 481 caagagcgcg ccccgtgcgt cccaaggcct ggcgactgct ccagcttcgc cgcccgtact 541 gcaacgcaga ggtcgggaag cccagcgtgc agtgcgggtg gaggggtcgc cgcgccggga 601 gccctcgtat cctgcgctga gagctctcgc taatgagctg caccccatca agctccagcc 661 acagcgggga ggccccggac gcatcgcgcc tctatgcgcc accccaggcc gctgcgcacc 721 accggaacca ccctctggac ctgtccccca tgtccgctgc cgtttggaca tcaagccgga 781 cgaggcagtg ctgcagcacg ccgccctgtc acgcactcct acccccagtg acttgtactg 841 tactgacccc agaactctgt actgtgacgg gccactgcct gggccccggg actacttgga 901 gcaccgcagt caacccttca caacgcctcc aggtcccacc caattcttct acaccgagga 961 gccagagggc tacgcaggca gctttaccac aagccccggc cttccctttg atggctactg 1021 ttccaggccc tacttgtccg aagaaccccc tagacccagt ccaaggcgtg ggggcagcta 1081 ctatgctggc gaagtacgca ccttcccgat ccaggagccc ccctcccgct cctactacgg 1141 ggagacaact cgagcctacg gtatgccttt cgttccccgg tatgtcccag aagagccccg 1201 ggcgcaccct ggagcccgca ctttctacac cgaggacttt gggaggtacc gagaacgcga 1261 tgtactggct cggacttacc cgcacccgcg cagcagccca ccctgggctg actggggtcc 1321 gaggccttac cgcacccttc aggtaatgcc gcctcccgcc cctggaccac tgttggcctc 1381 gtggcacggc ggcaccggca caagcccacc ccggctggcc accgatagcc gccactactc 1441 tcgatcctgg gacaacatcc tagctcctgg tcctcgtcgt gaagatcctc taggacgcgg 1501 ccgcagctat gagaacctcc tgggacgcga ggttcgggat acgaggggtt catcccctga 1561 aggtcggcgt ccaccagtcg tagtgaattt gtccacctca cccagacgct atgcagcact 1621 gtcgctgtcc gagacgtcgc tgacagagaa gggccgcgcg ggagagagcc tgggccgcaa 1681 ctggtacgtc acgccagaga ttaccatcac agacaacgac ctgcgctcag tggatcgccc 1741 gactgccaag ggctgggaat tgcctggagg ccgaccacgg cagcccgtat ccacggtccc 1801 tgagggtcct gcttcaagcc gccagcgcag cctcgagcag ctggacgagc tcatcactga 1861 cctggtcatc gactcacggt cgccagccca ggccccggag cctgccgccg aaggtttagg 1921 ccgccaacta cgccgcctgc tggactcacg ggctgcaggc cctggagggg ccaccctgct 1981 ggcgccatcg cgctcgcccc cggcctcggc tggcagcact gaagagccca ccggctcggg 2041 ggaggcagcg gacgcctccc ccgagcccag cgcagacgag gatgacttga tgacctgctc 2101 caacgcgcgc tgccggcgga cagagaccat gttcaacgcc tgcctctact tcaagtcgtg 2161 ccacagctgc tatacctact actgctcgcg tctgtgccgc cgagaggact gggacgcgca 2221 caaggcgcgt tgcgtgtacg gccgcgtggg cagcgtgtgc cgccacgtgc tgcagttctg 2281 ccgcgacagc agcccagtgc atcgcgcctt ctctcgcata gcgcgcgtcg gattcctgtc 2341 gcgaggccgt ggcgtgctgt tcttgggctt cccgagccca ggctctgccg acaacttcct 2401 acgctttggc ctcgaagggt tgctgttatc gcccacctac ctgtcgctgc gtgagctggc 2461 tacacatgcg gcgcccctgg gtagctatgc acgagagctg gcggcagcag gaaggctcta 2521 tgagccggca gagtgcttcc tgcttagcgt gtccgtggct gtgggcccca gcgctgcacc 2581 ccccggagcc gctgcccggc ccgcgccgcg cactcctggg cccacggtgc gcaagttcgc 2641 caaggtggct ctggccgctg gcagcccgac gcgtcctcct cctgcgcgtg gcggagagcc 2701 agatatggaa accttgatcc tgacgccacc cccaggtact gcgggcctgg acgaagaagg 2761 tgaggccggc cggcgcgcac gtgaagtagc cttcatccat atccaacgtg agcttcgaat 2821 gcgcggcgtc ttcctccgcc acgaattccc acgggtctat gagcagctct gtgagtttgt 2881 ggaagctaac cggcgcttca cgcccacaac catctatccc acggatcggc gcactggccg 2941 ccccttcatg tgcatgatca tggctgcatc ggagccgcgt gcactagatt gggtagccag 3001 cgccaacctg ctggacgaca tcatgtgaac catggaacta ttaggcccag gccccgaccc 3061 cgagccctgc ctactctact caggccctgc ctgatccatc acgaaggccc ccagagtctg 3121 gaccagttgg ttcagcgcct tccaaatccc ctgggcctcc tttagtctta tacaaattct 3181 ctgccctgag ctccacccac tccacacctc taattttgcc tgggagcccc cacccccacc 3241 cctgtcccgt ttccaaccag ctgcttcttt tcttctctgt tcgtaaccgg gccatccaaa 3301 ttccacatcc tgggctctcc ccaagccagt caaggagagg gggctcccca agggcccggt 3361 cctcgccctc ggtgctcccc actgggaggt ggggtgggac tgaggacctc tgggctctgc 3421 ctgctacact catcccatgg ggacaaactc agttggtgta tgttgtgggt gcttgctata 3481 gctctccaac ccttctagtc cagaaatcca tgttaaccaa agcccgatgt ccttacttcg 3541 agcacttccc ctaaccctcc tgtctggggt gtatcaggct cagagggcta ctccctgtgc 3601 acccctatga ggttgaggca atgggcgtag ccagcactgt acacgtacca gtgccgcctg 3661 tccttcaata ctctcacctt agtctgggca cttgtagaca agttggaata ctggggaatt 3721 ttcaggttaa ggccaaggta caatccaccc tgccagatgg aagcctgagc aggggaagca 3781 gtgtgggcgg cgacccaacc agagttaaga tctgggtaag gatttgagct cccaacacct 3841 acccaacaag atggccttaa aaatctgcct tccagagaag atggagaggt gggaagcgtg 3901 tgctgacgaa ttagcagaca accctactga gagcagctcc taccacggaa tgacttggga 3961 atgagtaagg aacagggctg tccctaatta ggaactggac taggaaaggt gcttagtagt 4021 gagccaccaa gtgtgggtac ggttaaggag tcggtgccga ggcctgcccc gaatccaatc 4081 ctgtgtgcaa aagtgccctg gctgcactcc aagctgagag agaagccaaa gcctgacgtg 4141 ttgtggagag gtctaggctt ccctaagccc cttgcctgac cccgtacctg gatctgagcc 4201 caggactttg tggagggtgt gacccagaga gggcttgcga ccagattctc caagaatctt 4261 gggagaagaa gaagccccaa gcccttagga gctctgaaag ttcaattgca agaacctggg 4321 acacacacct atgcacgagg gtgtgcacac gcgccagcta ccctcgactg gatgtccccg 4381 ggacactcca gctctctctc cttggcccct gtcttagcac atgcccggat gccgctcttg 4441 caacacttgc tgccccgccg cctgccgccc tccccagggg ctccacagtc cctcctgcgg 4501 cagactggca agaacgcctc tgacgagaag ggcaagtgct ttcgaaccaa gtaaaataga 4561 acttgaatgt aaaaaaaaaa aaaaaaaaa //