LOCUS BC065302 3066 bp mRNA linear HUM 02-DEC-2004
DEFINITION Homo sapiens lin-9 homolog (C. elegans), mRNA (cDNA clone
IMAGE:6156654), partial cds.
ACCESSION BC065302
VERSION BC065302.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3066)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3066)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: l Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32996736.
FEATURES Location/Qualifiers
source 1..3066
/db_xref="H-InvDB:HIT000261864"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6156654"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3066
/gene="LIN9"
/gene_synonym="BARA"
/gene_synonym="BARPsv"
/gene_synonym="Lin-9"
/gene_synonym="TGS"
/gene_synonym="TGS1"
/db_xref="GeneID:286826"
CDS <1..1707
/gene="LIN9"
/gene_synonym="BARA"
/gene_synonym="BARPsv"
/gene_synonym="Lin-9"
/gene_synonym="TGS"
/gene_synonym="TGS1"
/codon_start=1
/product="LIN9 protein"
/protein_id="AAH65302.1"
/db_xref="GeneID:286826"
/translation="GWDRVPDVATRRGLLRPAVSGKVRGRRRPSNVGFGNCSSAKALV
SLKEGSLSNTWNEKYSSLQKTPVWKGRNTSSAVEMPFRNSKRSRLFSDEDDRQINTRS
PKRNQRVAMVPQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKP
LFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKR
QKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTLNA
TYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQ
SPIIDNDPLLGQSPWRSKISGSDTETLGGFPVEFLIQVTRLSKILMIKKEHIKKLREM
NTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELAPDQGLQP
ADQPTDMRRRCEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCLAEGGD
LNSFEFKSLTDSLNDIKSTIDASNISCFQNNVEIHVAHIQSGLSQMGNLHAFAANNTN
RD"
BASE COUNT 1052 a 506 c 583 g 925 t
ORIGIN
1 ggctgggacc gagtcccgga cgtcgcgacg cgcagggggc tgctgcggcc ggcggtctcg
61 ggaaaagtga ggggacggag gcgcccaagc aacgtgggtt tcgggaactg ctcttcagca
121 aaagcccttg tcagtttaaa agaaggaagc ttatctaaca cgtggaatga aaagtacagt
181 tctttacaga aaacacctgt ttggaaaggc aggaatacaa gctctgctgt ggaaatgcct
241 ttcagaaatt caaaacgaag tcgacttttt tctgatgaag atgataggca aataaataca
301 aggtcaccta aaagaaacca gagggttgca atggttccac agaaatttac agcaacaatg
361 tcaacaccag ataagaaagc ttcacagaag attggttttc gattacgtaa tctgctcaag
421 cttcctaaag cacataaatg gtgtatatac gagtggttct attcaaatat agataaacca
481 ctttttgaag gtgataatga cttttgtgta tgtctaaagg aatcttttcc taatttgaaa
541 acaagaaagt taacaagagt agaatgggga aaaattcggc ggcttatggg aaaaccacgg
601 agatgttctt ctgcattttt tgaggaagag agatcagcat taaaacagaa acggcagaaa
661 ataaggctct tacaacaaag gaaagttgca gatgtttcac aattcaaaga tctcccagat
721 gaaattcctt tgcctctggt tattggaacg aaagttacag cacgattacg tggtgttcat
781 gatggtttgt tcactggaca aatagatgct gtggatactc ttaatgctac ttatagagta
841 acttttgata ggacagggct tggaacccat accatccctg actatgaagt tctcagtaat
901 gaacctcatg agacaatgcc aattgctgcc tttggacaaa aacagcggcc ttctcgattt
961 tttatgaccc caccacggtt acattatact cctcctctcc agtcaccaat tatagataat
1021 gatcctttat taggacagtc gccgtggaga agtaaaattt ctggctctga cactgaaaca
1081 ttaggtggtt ttccagtaga atttcttatc caagtgacca gattatcaaa aattctcatg
1141 attaaaaagg aacatatcaa gaaattaagg gaaatgaaca cagaagcaga aaaattgaaa
1201 tcatattcca tgcccatcag cattgaattt cagcggagat atgcaacaat tgttctggag
1261 cttgaacagc tgaacaagga cctaaacaaa gttttgcata aagttcaaca gtattgctat
1321 gagcttgctc cagaccaggg gctccagcct gcagatcagc caacagatat gagacgcagg
1381 tgtgaggaag aagcacagga aattgttcgg catgcaaatt cctcaacagg acagccctgc
1441 gttgaaaatg aaaatctgac agacttaatt tccaggctta cagctatttt gttacaaatt
1501 aagtgtctag cagaaggagg agacctgaat tcctttgaat tcaaatcact tacagactca
1561 ttaaatgata tcaagagtac aatagacgct tctaatatca gttgctttca gaataatgta
1621 gaaatccatg ttgcacatat tcagagtggc ctgagccaga tgggaaactt acatgccttt
1681 gcagcaaata acaccaacag agactgagta aagatttcat tattccaact gcacgggaca
1741 ttgtttttga gaagttcttt tcctttatat aggcttccaa caccaaataa cctaactgct
1801 ggaaaacaag ggaaatttaa atctccaaat aaggcatttt aatagactgt actgcttctt
1861 aaaccagcat tgctgaccag cattatattt atttttcttt tattattcag atgcagtagc
1921 attgcttatg ttacatatgt ttatattcac aaatattttt aaactgaaat atctgaacat
1981 aatataattt cgtggaagaa tacattgacc atttttttta atgtgcatga attcaccgca
2041 acacatgcag acaactgctg caatggagag tatgaagaaa cctggtcttt ttattcatgt
2101 cggtggcagt gtggaaattc catccagaaa attacaactc cacttgattt agttgatcac
2161 catctcagtc ttcaaaagat aacatcatga ggtgtgggaa gtcctagttt taaggaaacc
2221 actgaaatat agatgggaaa tgtggacttt acaagtatat gttatatata cttgcaatgt
2281 gacatggttc tgtagatcat tttataataa taaatatttt aatttatcat aacatataaa
2341 agaaaccttt gttgtttgtt gaaagaaaat gaaggaacag ggggaaaaaa ggtgcaaaat
2401 gctaaatttc taaaaatgga tttggcatgt cttcccatca gttcaggtca aaagtgcatt
2461 gttgtgagat ttattaaaaa aaaaatgata acacactatt ttcatatttt tttgtttatt
2521 tgcacaactt ttaaaccaga ttactggtta aaatccaaca gtacacaatt tataaagtaa
2581 aaagatttta taaggaaaac aaatataata accagtgctg tgaaatgcag aagaaaggct
2641 tgttttggtt gtttttcttt tttaggaaaa ccctgcctaa aatgttaatc ttgtaaaaag
2701 tatgtatttg gaattttctt cgttttaata gaatattata aagtcaaaat ataaattttt
2761 ttcaaatttg gagtttaaga tatagctgta gaggtggttt taattccttt agatgtctca
2821 taaaatgaga ctttttatat gttaatgtat aataaaactg aaacaagatt attttccatt
2881 tgaaattttt gtatagttta aaaaggcttc cgtattcttt gttggtattg tgccactgca
2941 gaactttagt gcagagttta tatttagcta aactgttatg ttaattaaga aatgcataaa
3001 tcttctattc ttaatatttg taattctaaa taaattgatc tatgaaaatt aaaaaaaaaa
3061 aaaaaa
//