LOCUS BC059656 2204 bp mRNA linear VRT 15-JUL-2006 DEFINITION Danio rerio selenoprotein P, plasma, 1a, mRNA (cDNA clone MGC:73338 IMAGE:4790285), complete cds. ACCESSION BC059656 VERSION BC059656.1 KEYWORDS MGC. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 2204) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2204) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-OCT-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Susan E. Brockerhoff, University of Washington cDNA Library Preparation: Susan E. Brockerhoff, University of Washington cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 136 Row: o Column: 15 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 39645918. FEATURES Location/Qualifiers source 1..2204 /organism="Danio rerio" /mol_type="mRNA" /strain="wild-type" /db_xref="taxon:7955" /clone="MGC:73338 IMAGE:4790285" /tissue_type="Eye, adult retina, 1-2 year old, mixed sex" /clone_lib="Zebrafish adult retina cDNA" /lab_host="DH10B" /note="Vector: pBluescript SK-" gene 1..2204 /gene="sepp1a" /gene_synonym="cb688" /gene_synonym="fb38a09" /gene_synonym="fj79f04" /gene_synonym="SePPa" /gene_synonym="wu:fb38a09" /gene_synonym="wu:fj79f04" /db_xref="GeneID:352931" /db_xref="ZFIN:ZDB-GENE-030311-1" CDS 36..1139 /gene="sepp1a" /gene_synonym="cb688" /gene_synonym="fb38a09" /gene_synonym="fj79f04" /gene_synonym="SePPa" /gene_synonym="wu:fb38a09" /gene_synonym="wu:fj79f04" /codon_start=1 /transl_except=(pos:210..212,aa:Sec) /transl_except=(pos:834..836,aa:Sec) /transl_except=(pos:852..854,aa:Sec) /transl_except=(pos:870..872,aa:Sec) /transl_except=(pos:903..905,aa:Sec) /transl_except=(pos:909..911,aa:Sec) /transl_except=(pos:915..917,aa:Sec) /transl_except=(pos:963..965,aa:Sec) /transl_except=(pos:993..995,aa:Sec) /transl_except=(pos:999..1001,aa:Sec) /transl_except=(pos:1041..1043,aa:Sec) /transl_except=(pos:1047..1049,aa:Sec) /transl_except=(pos:1071..1073,aa:Sec) /transl_except=(pos:1092..1094,aa:Sec) /transl_except=(pos:1098..1100,aa:Sec) /transl_except=(pos:1119..1121,aa:Sec) /transl_except=(pos:1125..1127,aa:Sec) /product="selenoprotein P, plasma, 1a" /protein_id="AAH59656.1" /db_xref="GeneID:352931" /db_xref="ZFIN:ZDB-GENE-030311-1" /translation="MWKALSLTLALCLLVGCSAESETEGARCKLPPEWKVGDVEPMKN ALGQVTVVAYLQASULFCLEQASKLNDLLLKLENQGYPNIAYMVVNNREERSQRLHHL LQERLLNITLYAQDLSQPDAWQAVNAEKDDILVYDRCGRLTYHLSLPYTILSHPHVEE AIKHTYCDRICGECSLESSAQLEECKKATEEVNKPVEEEPRQDHGHHEHGHHEHQGEA ERHRHGHHHPHHHHHHHRGQQQVDVDQQVLSQVDFGQVAVETPMMKRPUAKHSRUKVQ YSUQQGADSPVASUCUHURQLFGGEGNGRVAGLUHCDEPLPASUPUQGLKEQDNHIKE TUQURPAPPAEUELSQPTUVUPAGDATUGURKK" BASE COUNT 678 a 439 c 525 g 562 t ORIGIN 1 aggaaaacaa gttagtgggt ctgttgtttg gagtcatgtg gaaggcactc agccttacct 61 tggctctctg cctgctggtg ggctgcagtg cagagagcga aacagaagga gcccgctgta 121 aacttcctcc cgagtggaag gttggggatg tggagcccat gaagaacgct cttggacaag 181 tgacagtggt ggcttacctc caggccagct gattgttctg tctggagcaa gcatcaaagc 241 ttaatgactt gctcctgaag ctggagaacc agggttatcc aaatatagcc tacatggtgg 301 taaacaaccg tgaggaaagg tcccagcggc tgcaccacct gcttcaagaa aggctgttga 361 acatcaccct ctacgcccaa gacctcagcc agccggacgc ctggcaggct gtaaatgctg 421 agaaggatga cattttggtc tacgacaggt gtggccgact cacttaccat ctgtcacttc 481 cctacaccat cctgagccac ccacatgtgg aggaggctat aaaacataca tactgtgatc 541 gcatttgcgg agagtgcagc ctggagagtt cagcgcaact tgaagagtgc aagaaagcca 601 cagaagaagt gaataaaccg gtggaagaag aacctcgtca agatcatggt catcatgaac 661 atggtcatca cgagcatcaa ggagaggcgg aaaggcacag acatggccac catcatcccc 721 accaccacca tcaccaccac cgaggccaac aacaggttga tgtggaccag caggtcctat 781 cccaggttga ctttggtcag gtggctgttg aaacaccaat gatgaaacgg ccttgagcaa 841 agcacagcag gtgaaaagtg cagtacagct gacagcaggg ggcagattcc cctgtggcca 901 gctgatgctg acactgacga cagctctttg gcggagaggg caacgggcgc gtggcaggtc 961 tctgacactg tgatgagcct cttccggcct cctgaccctg acagggcctg aaggagcagg 1021 acaaccacat caaggagacc tgacagtgac gtcccgcccc tccggccgaa tgagagctgt 1081 cgcaaccaac ctgagtctga ccagcagggg acgccacttg agggtgacga aagaagtaaa 1141 cagggagcaa tcaataatat cagcatgtaa acatcaagtc actgctggtt aacactcaag 1201 gtgaaactta ccaactagta tttaaacctc agtgtgaggc agcactggac tttagcatcc 1261 cgatttgcaa attagttctt gttcaatgca agataatcaa atcaggaaca tcaaaataaa 1321 acagttttga tttggcaaaa acaaagaaac tgcaagtaac acattgaatc catttttaag 1381 tattgtcttg taaaacatac acctaatttc ccctaaaaat cataaatgtg atttttttat 1441 ctggttaaat ctgactttaa ctggtccagt gtctgtattt tttcacctga gagtgtgttc 1501 ggttcatcat gttagtgtct tttcacctct aagtgctttg tgtggtcttt atgaaggcag 1561 gtgcagaaac tatgcactag tggtgcctgt ctgatgtttg gccatacaga gcagagggca 1621 aaggtcatgt aacatcctgt aaccttggct atacctaata aaaattttgg ggtattaaaa 1681 tctatttttc ttaaagttct agttttcaga aagatgtttt tattgtgtgg agaagcagta 1741 gaagtggtta agtaggtgga aagtttattt ttaaaaacac ttttgaatca ctttattggg 1801 atcagtttct gttttctaat agttactagt atgtctgttg ttttaggtat acttggcatt 1861 acaataaaag caatgttact ggattatagg gaaatgcaca aagcctgtat cttgtactac 1921 actttttttt agagatgagc aagaatttaa tggagtaaca agtgaaagat tgggttgttg 1981 ttttatgata gatggtttta aacatttttt atacttaatg aaggttttct ggtaaatctt 2041 gtatcacctg gaagacccga gaaactgtat ggaaatgtat gctgtggtat aaatgaatgt 2101 gaaatgtatg tgaaatggaa gagggaaaat atgttactca gataaattca aataaagtaa 2161 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa //