LOCUS BC059209 5192 bp mRNA linear ROD 11-AUG-2006 DEFINITION Mus musculus valosin containing protein (p97)/p47 complex interacting protein 1, mRNA (cDNA clone MGC:66512 IMAGE:6406239), complete cds. ACCESSION BC059209 VERSION BC059209.1 KEYWORDS MGC. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 5192) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5192) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-OCT-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Jim Lin, University of Iowa cDNA Library Preparation: M. Bento Soares, University of Iowa cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 125 Row: f Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 27734105. FEATURES Location/Qualifiers source 1..5192 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /clone="MGC:66512 IMAGE:6406239" /tissue_type="Brain, enriched mouse brain 12.5dp" /clone_lib="NIH_BMAP_FO0" /lab_host="DH10B" /note="Vector: pYX-ASC" gene 1..5192 /gene="Vcpip1" /gene_synonym="4932442A08" /gene_synonym="mKIAA1850" /gene_synonym="VCIP135" /db_xref="GeneID:70675" /db_xref="MGI:MGI:1917925" CDS 227..3889 /gene="Vcpip1" /gene_synonym="4932442A08" /gene_synonym="mKIAA1850" /gene_synonym="VCIP135" /codon_start=1 /product="valosin containing protein (p97)/p47 complex interacting protein 1" /protein_id="AAH59209.1" /db_xref="GeneID:70675" /db_xref="MGI:MGI:1917925" /translation="MSQPPPPPPLPPPPPPPEAPQTSSSLAAAASPGGLSKRRDRRIL SGSCPDPKCQARLFFPASGSVSIECTECGQRHEQQQLLGVEEVTDPDVVLHNLLRNAL LGVTGAPKKNTELVKVMGLSNYHCKLLSPILARYGMDKQTGRAKLLRDMNQGELFDCA LLGDRAFLIEPEHVNTVGYGKDRSGSLLYLHDTLEDIKRANKSQECLIPVHVDGDGHC LVHAVSRALVGRELFWHALRENLKQHFQQHLARYQALFHDFIDAAEWEDIINECDPLF VPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSSGDYSATFLPGLIPAEKCTGR DGHLNKPICIAWSSSGRNHYIPLVGIKGAALPKLPMNLLPKAWGVPQDLIKKYIKLEE DGGCVIGGDRSLQDKYLLRLVAAMEEVFMDKHGIHPSLVADVHQYFYRRTGVIGVQPE EVTAAAKKAVMDNRLHKCLLCGALSELHVPSEWLAPGGKLYNLAKSTHGQLRPDKNYS FPLNNLVCSYDPVKDVLLPDYGLSNLTACNWCHGSSVRRVRGDGSIVYLDGDRTNSRS TGGKCGCGFKHFWEGKEYDNLPEAFPITLEWGGRVVRETVYWFQYESDPSLNSNVYDV AMKLVTKHFPGEFGSEILVQKVVHTILHQTAKKNPDDYTPVNIDGAHAQRVGDVQGQE LESQLPTKIILTGQKTKTLHKEELNMSKTERTIQQNITEQASVMQKRKTEKLKQEQKG QPRTVSPSTIRDGPSSAPATPTKAPYSPTTSKEKKIRITTNDGRQSMVTLKPSTTFFE LQESIAREFNIPPYLQCIRYGFPPKELMPPQAGMEKEPVPLQHGDRITIEILKGRAEG GPSTAAHSAHTVKQEEIAVTGKLSSKELQEQADKEMYSLCLLATLMGEDVWSYAKGLP HMFQQGGVFYNIMKKTMGMADGKHCTFPHLPGKTFVYNASEDRLELCVDAAGHFPIGP DVEDLVKEAVSQVRAEATTRSRESSPSHGLLKLGSGGVVKKKSEQLHNVTAFQGKGHS LGTASSHPHIDPRARETLAVRKHNTGTDFSNSSIKTEPPVFTAASSNSELIRIAPGVV TMRDGRQIDPDVVEAQRKKLQEMVSSIQASMDKHLRDQSAEQAPSDLSQRKVEVVSSV RPVNLQTGLPEPFSLTGGTENLNTETTDSHVADVLGAAFATRSKAQKENSMEEPEEMD SQDAETTNTTEPMDHS" BASE COUNT 1480 a 1027 c 1245 g 1440 t ORIGIN 1 tgcggggtgg ggtggtggcc gttacgttcg gggcaacggc taaggcagtg gagaagtgag 61 aagagaaaca acgtccggcg cttccgcctt cgcctaggag gaggaggaac tggtaggaaa 121 aggaaagcca ttcgccctgg gcctggacta gacctcgtcg ggccggcgga ggtctggcta 181 tgtgcctttg agggtcgctt gggacgccga gcgagagccg agagcgatgt ctcagccgcc 241 gccgcctcct ccgctgccgc cgccgccgcc tccccctgag gctccgcaga cttcgtcgtc 301 tctggcggcg gcggcttctc cggggggcct ttcgaaacga agggaccgaa gaatcctttc 361 cgggagttgc ccggatccca agtgccaggc gcgcctcttc ttcccggcct cgggttctgt 421 cagcatcgag tgtaccgagt gcggacagcg gcacgagcag caacagctgc tgggagtgga 481 ggaggtgacc gacccggacg tagtgctgca caatctgctg cggaacgcgc tactcggagt 541 gacgggggct cccaagaaga acacggaact ggtaaaggtg atgggcctct ccaactacca 601 ctgcaaatta ttgtcgccaa tattggcacg ctatggaatg gacaaacaaa cgggccgggc 661 caagcttctc cgggacatga accaaggcga actgttcgat tgcgcgttac ttggtgaccg 721 ggccttcctc atcgaaccag agcacgtcaa cacagtgggc tatggcaagg accgctccgg 781 aagcctcctg tatttgcacg acacgctcga ggatatcaaa cgggctaata aaagtcaaga 841 atgcctcatc ccagtgcatg tggatgggga tggacactgc ctagtgcatg ctgtgtctag 901 ggctctagta ggccgagagc tcttctggca tgctctgagg gagaatctta agcagcactt 961 tcagcagcac ctagcccgat atcaagccct gtttcatgac tttattgatg ctgccgagtg 1021 ggaggacatt atcaatgaat gtgaccctct gtttgtgcca cctgaaggtg tccccttagg 1081 cctgaggaat atccacatat tcggccttgc caatgtgtta catcgtccca taattctttt 1141 agattccctc agcggcatga gaagctctgg tgattattca gccacctttc tacctggcct 1201 catacctgca gagaaatgca ctgggagaga tggtcatttg aacaagccaa tctgtattgc 1261 gtggagtagc tctggtagaa accattatat tcccttggta ggcataaagg gggctgccct 1321 gcccaaacta cccatgaatt tgttacctaa agcatggggt gtgcctcagg accttattaa 1381 aaagtacatc aagcttgagg aggatggtgg ctgtgttatt ggaggagaca gaagtttgca 1441 ggataagtac ttacttaggc tggttgctgc tatggaagaa gtctttatgg acaaacatgg 1501 tatccatcct agtttggttg ctgatgtaca tcagtatttc tacagaagga ctggggtgat 1561 aggagttcag cctgaggaag ttacagcagc tgctaaaaag gcagtaatgg acaatcgcct 1621 tcacaagtgt ttgctttgtg gtgccctttc tgaacttcat gtcccttctg agtggttggc 1681 tccaggaggg aaactgtata acttggcaaa aagtactcat gggcagttga ggcctgacaa 1741 aaattacagc tttcccttaa acaatttggt ttgttcatat gatccagtaa aagatgttct 1801 gctaccagac tatggattga gtaatctaac agcttgtaat tggtgccatg gctcatctgt 1861 gcgaagagtc agaggagatg gctctattgt gtatttggat ggagacagaa ctaattctag 1921 gtctactggt ggcaaatgtg gttgtggatt caaacatttt tgggaaggta aagagtatga 1981 caatcttcca gaagcttttc ctatcacttt ggagtgggga ggaagagtag tcagagaaac 2041 agtatattgg tttcagtatg aaagcgatcc atctttgaat agtaatgttt atgatgttgc 2101 aatgaaactt gttaccaagc actttccagg tgaatttggg agtgagatcc tagttcagaa 2161 agttgtccac actatattgc atcagactgc aaaaaaaaat ccggacgatt acactcctgt 2221 aaatatagat ggtgctcatg ctcagagagt tggagatgtg caaggacaag aattggagtc 2281 gcagctacca actaaaatta ttcttactgg acagaaaaca aaaactttgc ataaggaaga 2341 attaaacatg agtaaaactg aaagaactat tcaacagaac atcacagaac aagcttctgt 2401 gatgcagaaa cggaaaacag agaaattaaa acaagagcaa aaggggcagc ccagaactgt 2461 ttctccaagt actattcgtg atgggccatc atctgcacct gccaccccca ccaaggctcc 2521 ctactcacct accacttcta aggagaagaa gattcgaata acaactaacg atggacggca 2581 gtctatggtt acccttaagc cttcaacaac cttttttgag cttcaggaaa gtatagccag 2641 agagttcaac attcctccat atttacagtg tattcgatat ggctttcctc ctaaagagtt 2701 aatgccaccc caggcaggga tggaaaagga gccagttcct ttacagcacg gtgacagaat 2761 tacaatagag atcttaaaag gaagagcaga aggtggtcca tccactgctg cacactcagc 2821 ccacactgtg aaacaagaag agattgctgt tactggtaaa ctgtcatcta aggaacttca 2881 ggagcaagct gacaaagaaa tgtactcctt gtgtctttta gctacattaa tgggagaaga 2941 cgtgtggtct tatgcaaagg gacttcctca catgttccag cagggtggtg tattctacaa 3001 tattatgaag aaaactatgg gcatggctga tggcaaacat tgtacttttc cacatctacc 3061 tggcaaaacc tttgtttata atgcttctga agatagactg gagttgtgtg tcgatgctgc 3121 aggacatttc cccattggtc ctgatgttga agatttagtt aaagaggctg taagtcaggt 3181 gcgagcagag gctactacaa gaagtaggga atcaagccct tcacatgggt tattaaaact 3241 aggtagtggt ggagtagtga aaaagaaatc tgagcaactt cacaatgtaa ctgcctttca 3301 ggggaagggc cattctctag gaactgcatc tagtcacccg cacattgatc ccagagctag 3361 ggaaactctg gctgtgagaa agcataatac agggacagat tttagtaata gttccattaa 3421 aacagagcct cccgtgttca cagctgcttc tagtaatagt gagcttattc gaatagctcc 3481 tggagtagta acaatgagag acggtaggca gattgatcct gatgtggttg aggcccagcg 3541 gaaaaaattg caggaaatgg tttcttctat tcaggcttca atggacaagc acttgcggga 3601 tcaaagtgca gagcaagcac catctgatct ttcccaaaga aaagtcgaag ttgtgagttc 3661 tgtgaggcct gtgaatcttc agactggctt gcctgaaccg ttttctttaa ctggtggcac 3721 tgagaatttg aatactgaaa caactgatag tcatgtagca gatgtactgg gagcagcatt 3781 tgccacaagg tcaaaagcac aaaaagaaaa ttccatggag gaacctgaag agatggatag 3841 tcaagatgct gagacgacta acacaactga gccgatggat cactcgtgat ttaatttaga 3901 ggctaataaa ggcagaatgt ttattgtgaa tatgtaatat ttgttggctg ggccacataa 3961 cttgagtagt cattaaaaat cttgtacgta tataattcaa agattatatc ttgttattca 4021 gtgcatgata gcaagtgtgt gattggcaat agcttttaat atactgctgc ccaggctggc 4081 tctgaattct tgtaaattag tttagatctt ttgaaagggt ttcttccaga tatgtggttc 4141 attggaagtt ctttgtcatt tttaattcca tgaaagtctt aatttccaga catgaaaatt 4201 ctcttgttaa atgtttggtt tctgcacagg ccagaattga agaggaaatg acagtttgta 4261 cacattgttt tcaaggtagc cgtcctacat ttcatgagaa tgttgatttc aagtttacct 4321 gaactaaatg tatcttaaaa tacataaaac actttattag attacttata atattataga 4381 gacagctatt gttggcaaaa atatcttgac agaagagagt agtgatacaa cattttcctg 4441 atttgagcaa acttgggaag aaatatctac cctagtatga taaaatcagt gtgattcagt 4501 tagttggtct gagatatggc cagttgtgtg ctcttgttga taatatgttg ccagtatttt 4561 ttaaatcttg gccttgtcaa gttccaccta ttatttttaa aatcttacat aaaagagaat 4621 ggcattttgt tttagaatat ttaaaaataa tggtagcagt agttaatttc taattttcag 4681 agtatgtcag agtcacaaag agtttatctg tatgaatggt tctatagttt tgacacagtg 4741 gtgtgtaagc ctgtatatgc taaatgtctc taagccccta tgaaccaaaa atgttttcct 4801 tttttcttag tgtccttaag attttctttt tgtcagcttc acttgagttt ggatgcatag 4861 tttactccag tagaccatta gcatttgctt atattgcttt catgcttatg tagtaaaaac 4921 aatgcatatt cctgagattg gtactgctct tgtattctgt tctgtagatt tgtatttgta 4981 aatgtgtttt cagtccatct tcctttgttt actgaaatta agttgaattt gaatgaacga 5041 atgacaaatg tatgttaata taatctctta gagcattcaa agcccggcta tctctgtttg 5101 cacatgtaac agatgcagaa ctgtttgcaa ttctacaaaa ttgtatgtca gaaaatacat 5161 tatcaggtgt ttaaaaaaaa aaaaaaaaaa aa //