LOCUS BC058205 2521 bp mRNA linear ROD 09-MAY-2005 DEFINITION Mus musculus SMC hinge domain containing 1, mRNA (cDNA clone IMAGE:5360557), partial cds. ACCESSION BC058205 VERSION BC058205.1 KEYWORDS . SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2521) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2521) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (15-SEP-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: The Cepko Laboratory cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 127 Row: a Column: 3. FEATURES Location/Qualifiers source 1..2521 /organism="Mus musculus" /mol_type="mRNA" /db_xref="taxon:10090" /clone="IMAGE:5360557" /tissue_type="Eye, retina, mouse strain C57Bl\6" /clone_lib="NIH_MGC_94" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..2521 /gene="Smchd1" /gene_synonym="mKIAA0650" /db_xref="GeneID:74355" /db_xref="MGI:MGI:1921605" CDS <1..1664 /gene="Smchd1" /gene_synonym="mKIAA0650" /codon_start=3 /product="Smchd1 protein" /protein_id="AAH58205.1" /db_xref="GeneID:74355" /db_xref="MGI:MGI:1921605" /translation="PNKVGAYCIQFDFMIDKTNILSSQQVIVDVLPNQPMKLVPDSQP ATPAVSNVRSIASRTLVKDLRLSITDNYGNHTGMDLVGTVVATIKGFNEEDTDTPLFI GKVRTLEFPFVKGSAEITTLVLAENSPGRDSTEYFIIFEPRLSTVSGTLESYSLPFMF YNDVKKQQQMAALTKEKDELSKSITMYRSLFDANKQLVDEMKCQAEEAKLKETQLRNE LKAYNIDIPATQQTTHIEALLEKKITEQNELKKRPRRLCTLPNYTKRSGDILGKIAHL AQIEDDRAAMVISWHLASDMDCVVTLTTDAARAIYDETQGRQQVLPLDSIYRKTLPDW KRPLPHFRNGKLHFKPFGNPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANH YRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCVVLG KQIDLIQQYRTALYRLSSVNEDLDNQLQYLHTPDMKKKKQELDEQEKSLKRIEQKLGM TPVRRCNESLCHSPKIEVTECPIPTKRMRRESTRQNRRPKGDVPN" BASE COUNT 798 a 498 c 532 g 693 t ORIGIN 1 gccctaacaa ggtgggagca tattgtatcc agtttgattt catgattgat aagacaaata 61 ttctaagcag ccaacaggtt atagttgatg ttctccccaa ccagcctatg aagttggttc 121 ctgacagcca accagctacc ccagctgttt ctaatgtccg ttcaattgcc agcaggacct 181 tggtcaaaga cctgcgcctc agtatcacag ataattatgg taatcacact ggaatggatc 241 tggttggcac tgtagtagca accattaaag gctttaatga ggaggacact gataccccac 301 tcttcatcgg gaaggttagg acgcttgagt ttccctttgt gaaaggctct gctgaaatca 361 cgactctagt gctggcagaa aatagtcctg gaagggatag tactgaatac tttattatct 421 ttgagcctcg gctgtcaact gtatcaggaa cattagaatc atatagcctg ccatttatgt 481 tttacaatga tgttaagaag cagcaacaaa tggcagcgct tacgaaggag aaggacgagt 541 tatccaagtc catcactatg tacagaagtc tcttcgatgc caacaagcag cttgtggatg 601 aaatgaaatg ccaagctgaa gaagcaaagt taaaagagac ccagctacga aatgaactaa 661 aagcgtacaa tattgatatt cctgcgacac aacagacaac tcatattgaa gcacttttgg 721 aaaaaaagat aacagaacag aacgagctta aaaagaggcc cagaaggttg tgtactcttc 781 caaactacac taaacgcagt ggagatattt tgggaaagat tgcacatcta gcacaaattg 841 aagatgatcg agctgccatg gttatctctt ggcatctggc aagtgacatg gactgtgtgg 901 ttaccctaac cactgatgcc gcacgcgcta tctatgacga aactcaaggt cgccagcaag 961 tgttgcccct tgattctatt tacaggaaaa ctcttccaga ttggaaaaga cctctacctc 1021 atttccgaaa tggtaaatta cactttaagc cctttggaaa tccagtcttt gcccgagatt 1081 tgttaacatt cccagataat attgaacatt gtgaaacagt ttttggtatg ctgttaggag 1141 acaccattat tttggataat ctggatgcag ccaatcatta tagaaaagag gttgttaaaa 1201 tcacacactg ccccacactc ctgactagag atggagatag aattagaagt aatgggaagt 1261 ttgggggcct tcagaataaa gctccgccaa tggacaaact tcggggaatg gtcttcggag 1321 ctccagtacc aaagcagtgt gtggtcttgg ggaaacaaat agatcttatt cagcagtatc 1381 gcactgctct gtacaggctg agctctgtga acgaggactt ggacaatcag ctgcagtacc 1441 ttcacactcc tgatatgaag aagaaaaagc aagaacttga tgaacaggaa aaaagtctga 1501 aacgaataga gcagaaactc ggaatgactc ctgtgcgcag gtgtaatgag tcactttgtc 1561 actcaccaaa gattgaggtg acagagtgcc caatccctac taaaagaatg agaagagaat 1621 ccaccagaca gaatagaagg ccaaaaggtg acgtaccaaa ctgagcattt ctgaagacta 1681 tgataatcct ggcaagaatt tcctgttcct ccaaatgggc ctggaagcca ttgaagctat 1741 tcaactttca gaatctcatg gggcagcaca aatttcctgg ggtcattgca gtcgttgggc 1801 ccgtcggtgg ctggcttgca aatgtacact tttacccagt ggtggtcatc ccagccctgg 1861 gacgtttcct gccctgaaga caacttcctg ctcctcagca taatcatgaa catattagaa 1921 ctgtttctta aaaacagcct tttttattgc ctttttctgg acttatttaa caaacatgtt 1981 ttgtcttttg tgtaaggaaa attctagaac tagatattta actgtaaata tatgtggaaa 2041 gttgaattct gcattaaaac agagaaagca caggtgtctg ggaatttaaa tgttcagata 2101 cacaaaaaca ttggtgagaa taggatagcc taaagattgt gtcctgtatg agttggtgat 2161 aggacagcct aaagactgta tcctgtatat aagtaagata tgcagcagca cttggcttta 2221 attctacatt tgcattattt tctaattttt tacaactatt tttaagagat taaagaaaac 2281 aagaattcaa agagtttgtt agggatatgt tatataaaca tctaagctgt gcatttattc 2341 aaactaacat acgccgtgtg tgtctctgta agtgcaagac ttttgctctg tgaatttatt 2401 ttgtaaggaa tacttttggt acaattttct gttccaggaa atgtgtgttt ttaatccttc 2461 ctgattatgc agcaaggtta ataaacaaca atcatttctc ctccccaaaa aaaaaaaaaa 2521 a //