LOCUS BC051786 4867 bp mRNA linear HUM 04-OCT-2017
DEFINITION Homo sapiens replication factor C (activator 1) 1, 145kDa, mRNA
(cDNA clone MGC:57542 IMAGE:5521245), complete cds.
ACCESSION BC051786
VERSION BC051786.3
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4867)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4867)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
REFERENCE 3 (bases 1 to 4867)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (04-OCT-2017) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK Sequence update by database staff to remove vector contamination
COMMENT On Oct 4, 2017 this sequence version replaced BC051786.2.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: f Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 15011930.
FEATURES Location/Qualifiers
source 1..4867
/db_xref="H-InvDB:HIT000053679"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57542 IMAGE:5521245"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4867
/gene="RFC1"
/gene_synonym="A1"
/gene_synonym="MGC51786"
/gene_synonym="MHCBFB"
/gene_synonym="PO-GA"
/gene_synonym="RECC1"
/gene_synonym="RFC"
/gene_synonym="RFC140"
/db_xref="GeneID:5981"
/db_xref="MIM:102579"
CDS 75..3521
/gene="RFC1"
/gene_synonym="A1"
/gene_synonym="MGC51786"
/gene_synonym="MHCBFB"
/gene_synonym="PO-GA"
/gene_synonym="RECC1"
/gene_synonym="RFC"
/gene_synonym="RFC140"
/codon_start=1
/product="RFC1 protein"
/protein_id="AAH51786.1"
/db_xref="GeneID:5981"
/db_xref="MIM:102579"
/translation="MDIRKFFGVIPSGKKLVSETVKKNEKTKSDEETLKAKKGIKEIK
VNSSRKEDDFKQKQPSKKKRIIYDSDSESEETLQVKNAKKPPEKLPVSSKPGKISRQD
PVTYISETDEEDDFMCKKAASKSKENGRSTNSHLGTSNMKKNEENTKTKNKPLSPIKL
TPTSVLDYFGTGSVQRSNKKMVASKRKELSQNTDESGLNDEAIAKQLQLDEDAELERQ
LHEDEEFARTLAMLDEEPKTKKARKDTEAGETFSSVQANLSKAEKHKYPHKVKTAQVS
DERKSYSPRKQSKYESSKESQQHSKSSADKIGEVSSPKASSKLAIMKRKEESSYKEIE
PVASKRKENAIKLKGETKTPKKTKSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPK
ALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVM
GRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAVETEMKKESKLERTPQ
KNVQGKRKISPSKKESESKKSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGD
NKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSE
DKKHAAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRS
KSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGL
IKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPP
AMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVF
AAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADS
ICDGDLVDSQIRSKQNWSLLPAQAIYASVLPGELMRGYMTQFPTFPSWLGKHSSTGKH
DRIVQDLALHMSLRTYSSKRTVNMDYLSLLRDALVQPLTSQGVDGVQDVVALMDTYYL
MKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAIKASRHSTS
PSLDSEYNEELNEDDSQSDEKDQDAIETDAMIKKKTKSSKPSKPEKDKEPRKGKGKSS
KK"
misc_feature 1260..1514
/gene="RFC1"
/gene_synonym="A1"
/gene_synonym="MGC51786"
/gene_synonym="MHCBFB"
/gene_synonym="PO-GA"
/gene_synonym="RECC1"
/gene_synonym="RFC"
/gene_synonym="RFC140"
/note="Lig; Region: NAD-dependent DNA ligase (contains
BRCT domain type II) [DNA replication, recombination, and
repair]"
/db_xref="CDD:COG0272"
misc_feature 2016..2456
/gene="RFC1"
/gene_synonym="A1"
/gene_synonym="MGC51786"
/gene_synonym="MHCBFB"
/gene_synonym="PO-GA"
/gene_synonym="RECC1"
/gene_synonym="RFC"
/gene_synonym="RFC140"
/note="AAA; Region: ATPase family associated with various
cellular activities (AAA). AAA family proteins often
perform chaperone-like functions that assist in the
assembly, operation, or disassembly of protein complexes"
/db_xref="CDD:pfam00004"
BASE COUNT 1666 a 909 c 1092 g 1200 t
ORIGIN
1 atcctgagcc tcgataacag attcctcaac cggcccaccc gccagccagc cagcgccttc
61 atcctggggc tgcgatggac attcggaaat tctttggagt aataccaagt ggaaagaaac
121 ttgtaagtga aacagtaaag aagaatgaga aaacaaagtc tgatgaagaa actttaaaag
181 caaagaaagg aataaaggaa atcaaggtaa atagctcccg taaagaggat gacttcaaac
241 aaaagcaacc aagcaagaaa aagaggatca tctatgattc agattcagag tcagaggaga
301 cgttgcaggt aaaaaatgcc aaaaagccac cagaaaaact gccagtatct tctaaacctg
361 gtaaaatttc acggcaggat cctgttacat acatttcaga aacagatgaa gaagatgact
421 ttatgtgtaa gaaggcggcc tctaaatcaa aagagaatgg aagatctaca aatagtcatc
481 ttggaacatc aaacatgaaa aagaatgaag aaaacactaa gaccaagaat aagcctttat
541 caccaataaa acttacaccc acatcagtac ttgattattt tggaactgga agtgtccaaa
601 gatctaataa gaagatggtg gcaagcaaaa gaaaagagct ttcacaaaat acagatgagt
661 ctggattaaa tgatgaagcc atcgccaagc aattacagct tgatgaagat gcggagctgg
721 agaggcagtt gcatgaagat gaagagtttg ccagaacatt agccatgttg gatgaagaac
781 ccaagaccaa aaaggctcga aaggacacag aagcgggaga aacgttttca tctgtccaag
841 ccaatttaag taaagcagaa aaacataaat atcctcataa agtaaaaaca gcacaagttt
901 cagatgaaag aaagagctac agtcctagga agcaaagtaa atatgaaagt tcaaaagaat
961 ctcagcaaca ttccaagtca tcagctgaca aaataggaga agtctcttct cccaaggcca
1021 gttctaagct ggcaattatg aaaagaaaag aagagagctc ttataaagaa atagagcctg
1081 tggcctcaaa aagaaaagaa aatgccatta aattgaaagg agagacaaaa actcctaaga
1141 aaaccaaaag ttctccagct aaaaaagagt ctgtaagtcc tgaagattct gaaaagaaac
1201 gcactaatta tcaagcttat cgaagctact taaatcgaga aggtcccaag gctctgggct
1261 ccaaagaaat accaaaggga gctgaaaatt gcttggaagg ccttatattt gtaatcacag
1321 gcgtgctgga gtctattgaa cgagatgagg ccaagtctct aattgaacgt tatgggggaa
1381 aagtaacagg aaatgtcagc aagaaaacaa attatcttgt catgggtcgt gatagtggac
1441 agtccaagag tgataaggcc gcagccttgg ggacaaaaat tattgatgaa gatggcctgt
1501 tgaatctgat tcggactatg ccaggcaaga aatccaagta tgaaatagca gttgaaactg
1561 agatgaagaa agagtccaaa ctggagagaa caccccaaaa aaatgtccaa ggaaaaagaa
1621 aaattagtcc atctaaaaag gaatcagaat ctaaaaagag caggccgact tccaaaaggg
1681 acagtttggc aaagacaata aaaaaggaaa cagatgtgtt ttggaaaagc ctggatttca
1741 aggagcaggt ggctgaggag acaagtggtg acaacaaggc taggaatttg gctgatgaca
1801 gcagtgaaaa caaagtggaa aatttgctct gggtggataa atataagcca acctcgctca
1861 agaccataat tggacagcaa ggtgaccaga gctgtgccaa caaactccta cgctggctcc
1921 gaaactggca aaagagttct tccgaagata aaaaacacgc agcaaagttt ggtaaatttt
1981 ccggcaaaga tgatggctct agttttaaag cagcgttgct gtcaggccct cctggtgttg
2041 gcaaaaccac cacagcttcc ctggtgtgtc aggagttggg atacagctac gtggaactga
2101 atgcaagtga cacccggagt aagagcagtt tgaaggcgat tgttgctgag tcactgaaca
2161 ataccagcat caaaggcttt tattcaaatg gagcagcctc ttcagtaagc acgaaacatg
2221 ctctcatcat ggatgaagta gatggcatgg caggcaatga ggatagggga ggaattcagg
2281 aattaattgg cctgataaaa catactaaaa ttcccattat ttgtatgtgc aatgatagaa
2341 atcatcccaa gattcgctct ctggttcatt attgttttga tcttcgtttt caaagacctc
2401 gggttgaaca gattaagggt gctatgatgt ctattgcatt taaagaaggt ttaaagattc
2461 cccctccagc tatgaatgaa ataattttgg gagccaatca agatatcaga caggttttac
2521 ataatctgag tatgtggtgt gcacgaagta aagcattaac ctatgaccag gccaaagctg
2581 attctcacag agccaaaaag gatatcaaaa tgggcccgtt tgatgttgcc cggaaagtgt
2641 ttgcagctgg agaggagact gctcacatgt cacttgtgga caagtcagat ctcttttttc
2701 atgattattc aatagcaccc ctcttcgtcc aggaaaatta catacacgtg aagcctgtag
2761 cagcaggggg tgacatgaaa aagcacctga tgcttttaag cagagcagca gacagcatat
2821 gcgatggtga cctagtggac agccagatcc ggagtaagca aaactggagt cttctgcctg
2881 cgcaggccat ttatgccagt gttcttcctg gagagttgat gagggggtac atgacccagt
2941 ttcccacctt cccaagctgg ctggggaagc actcgtctac aggcaaacat gatcgtattg
3001 ttcaggacct ggccttgcat atgagtctca gaacttactc cagcaaaagg actgtaaaca
3061 tggattatct gtcgcttcta agggatgcac ttgtacagcc cttgacctca caaggagtag
3121 acggagtaca ggatgttgtt gcacttatgg acacatatta tttgatgaaa gaagactttg
3181 agaatatcat ggaaatcagc agctggggtg gcaaacctag tcccttttca aagctggatc
3241 ccaaggtgaa agcagccttc acaagagctt acaataagga agcccacctt actccatact
3301 cacttcaagc tataaaggca tctagacaca gcacaagccc atccctggat tcggaataca
3361 atgaagaatt aaatgaagat gactctcaat ctgatgagaa agaccaagat gctatagaaa
3421 ctgatgccat gatcaagaaa aagacaaaat cttcaaagcc ttcaaaacca gaaaaagata
3481 aggagcccag aaaaggaaaa ggaaaaagtt cgaagaaatg aaaccatttt tcactagcga
3541 cagccacttt ttactctccc tcctgaccag tccagctggt ctagagaaag ccttgttttt
3601 tcccagagca accatgtttt agcataatgg gatgacctgg tgtcccatta taaataaagg
3661 gtggtatggc tagaagggta tgagcagtag gcttatgtac acctcttata gaggttgata
3721 ggactgcttg ggtcctccac tgtcctctgt caatctagtt agacgtgctt ctgaatgact
3781 gtagaattgg aactagaaac tacacctggg ctttggagtc agattttagt taacaataat
3841 gagcctggga gcagtagtac taaggcgtct tttgtaggct taagaattta tcctaatggc
3901 ctttatagga ccaatgctga ttttttttaa aggcagttcc tattatgtgg tgaaattttg
3961 taaataaatg attatacaaa acagtcacca cctagaactg ggtattcttt gtacattgtc
4021 agatatcttt caaagtataa attaggaata aaaatgttcc acatgatatg tgtacaaatt
4081 ctttttaaga ttgtcatctt gtacagcaaa atattatgtt ggtatattac ttccttatta
4141 atttgcaaat gattggatta aaaaagctca ctgtattcct tactaacctg ttgtgtgaaa
4201 cataacattg gcagtcgagg agtcagaact cggattccca gcctcactcc ctctgtgtgt
4261 gttgaccacg tctctgctgt gaataggatt tcatgcagtg gtctgttatg gggctttgca
4321 gcgtgggggg ctgcagaaga ttctcagaca ttcttatcct tctggagtct caacccatca
4381 ggttcagacc agtaggaacc aggctgggtc aggctcttaa tttcactatg gtgggggaca
4441 aaatgaacac tggcttttgt tcactttgcc cctgagagat ctagtcctgt cctgtgatgg
4501 cttccacaaa ccctgttgga agtttgggtt attcctataa ctgtatgtgt tgagtggccg
4561 tgaggctatg gacctagcct ggaatttaga tgtgtagcta ttttttaatc ttgttggtaa
4621 atgctcagag gtctgtgcta cctctgtgag gtatatacta aaatgaatgt aaaataagga
4681 tcgtattccc tgctttaagg aactggtagt cttgtttggg tgatgagaca aagttcttga
4741 gacatttaaa ctgtatttac cagtgtgaaa aatgtcattt atggagatta attcattatg
4801 gaaataaaac attgcctaag cccttaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4861 aaaaaaa
//