LOCUS BC050663 1354 bp mRNA linear HUM 26-APR-2019
DEFINITION Homo sapiens SH3-domain kinase binding protein 1, mRNA (cDNA clone
IMAGE:4421051), partial cds.
ACCESSION BC050663
VERSION BC050663.3
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1354)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1354)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
REFERENCE 3 (bases 1 to 1354)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (26-APR-2019) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK Sequence update by database staff to remove vector contamination
COMMENT On Apr 26, 2019 this sequence version replaced BC050663.2.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: a Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13994241.
FEATURES Location/Qualifiers
source 1..1354
/db_xref="H-InvDB:HIT000099252"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4421051"
/tissue_type="Adrenal cortex, carcinoma"
/clone_lib="NIH_MGC_84"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>1354
/gene="SH3KBP1"
/gene_synonym="CIN85"
/db_xref="GeneID:30011"
/db_xref="MIM:300374"
CDS 211..>1354
/gene="SH3KBP1"
/gene_synonym="CIN85"
/codon_start=1
/product="SH3KBP1 protein"
/protein_id="AAH50663.1"
/db_xref="GeneID:30011"
/db_xref="MIM:300374"
/translation="MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGR
RGLFPDNFVREIKKEMKKDPLTNKAPEKPLHEVPSGNSLLSSETILRTNKRGERRRRR
CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESD
ELGISQDEQLSKSSLRETTGSESDGGDSSSTKSEGANGTVATAAIQPKKVKGVGFGDI
FKDKPIKLRPRSIEVENDFLPVEKTIGKKLPATTATPDSSKTEMDSRTKSKDYCKVIF
PYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKEG
NRPKKPPPPSAPVIKQGAGTTERKHEIKKIPPERPEMLPNRTEKKKK"
misc_feature 220..378
/gene="SH3KBP1"
/gene_synonym="CIN85"
/note="SH3; Region: Src homology 3 domains"
/db_xref="CDD:smart00326"
misc_feature 1012..1188
/gene="SH3KBP1"
/gene_synonym="CIN85"
/note="SH3; Region: Src homology 3 domains"
/db_xref="CDD:smart00326"
BASE COUNT 419 a 334 c 380 g 221 t
ORIGIN
1 gccccggggc agcagcggca gcagcagcag aggcagcagc gggcggcgct gagccgccgc
61 cgccgccact gaggaagaag ccggcccagc cgccgccgcg tccggaccct cgcgcctgga
121 tcccagcgcc ccgatcccgg cgccccaacc cccacgcccg cctccgccaa ctttcacgct
181 gcctcggcgg cccggcccgg ctcgacgcca atggtggagg ccatagtgga gtttgactac
241 caggcccagc acgatgatga gctgacgatc agcgtgggtg aaatcatcac caacatcagg
301 aaggaggatg gaggctggtg ggagggacag atcaacggca ggagaggttt gttccctgac
361 aactttgtaa gagaaataaa gaaagagatg aagaaagacc ctctcaccaa caaagctcca
421 gaaaagcccc tgcacgaagt gcccagtgga aactctttgc tgtcttctga aacgatttta
481 agaaccaata agagaggcga gcgacggagg cgccggtgcc aggtggcatt cagctacctg
541 ccccagaatg acgatgaact tgagctgaaa gttggcgaca tcatagaggt ggtaggagag
601 gtagaggaag gatggtggga aggtgttctc aacgggaaga ctggaatgtt tccttccaac
661 ttcatcaagg agctgtcagg ggagtcggat gagcttggca tttcccagga tgagcagcta
721 tccaagtcaa gtttaaggga aaccacaggc tccgagagtg atgggggtga ctcaagcagc
781 accaagtctg aaggtgccaa cgggacagtg gcaactgcag caatccagcc caagaaagtt
841 aagggagtgg gctttggaga cattttcaaa gacaagccaa tcaaactaag accaaggtca
901 attgaagtag aaaatgactt tctgccggta gaaaagacta ttgggaagaa gttacctgca
961 actacagcaa ctccagactc atcaaaaaca gaaatggaca gcaggacaaa gagcaaggat
1021 tactgcaaag taatatttcc atatgaggca cagaatgatg atgaattgac aatcaaagaa
1081 ggagatatag tcactctcat caataaggac tgcatcgacg taggctggtg ggaaggagag
1141 ctgaacggca gacgaggcgt gttccccgat aacttcgtga agttacttcc accggacttt
1201 gaaaaggaag ggaatagacc caagaagcca ccgcctccat ccgctcctgt catcaaacaa
1261 ggggcaggca ccactgagag aaaacatgaa attaaaaaga tacctcctga aagaccagaa
1321 atgcttccaa acagaacaga aaaaaaaaaa aaaa
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