LOCUS BC039296 3900 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens non-protein coding RNA 153, mRNA (cDNA clone IMAGE:5261585), complete cds. ACCESSION BC039296 VERSION BC039296.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3900) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3900) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 63 Row: d Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: GenomeScan gene prediction This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..3900 /db_xref="H-InvDB:HIT000095575" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5261585" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3900 /gene="NCRNA00153" /gene_synonym="HT013" /db_xref="GeneID:55857" /db_xref="HGNC:HGNC:15865" CDS 96..941 /gene="NCRNA00153" /gene_synonym="HT013" /codon_start=1 /product="NCRNA00153 protein" /protein_id="AAH39296.1" /db_xref="GeneID:55857" /db_xref="HGNC:HGNC:15865" /translation="MSRTLASAVPLSSPDYYERLGQLQHGLRDSEKKRLDLEKKLYEY NQSDTCRVKLKYVKLKNYLKEICESEKKAHTRNQEYLKRFERVQAHVVHFTTNTEKLQ KLKLEYETQIKKMLCSKDSLGLKEELTDEDREKVAVQEGINSGTAMSRGLYQPATIFM GRQMSAILSMRDFSTEHKSPQPTKNFSIPDPHSHRQTAQSSNVTDSCVVQTSNDTQCL NKSDNIDGKASLQIGEKTPVTASVLSEEEQTHCLEIGSNTRHGKSNLSEGKKSAELNS PLRKD" BASE COUNT 1281 a 715 c 818 g 1086 t ORIGIN 1 gtttacccgc ggtgcatggt ggggcggtct ccttcggcaa ccccggccga acgggccacc 61 cagaggctgt gctgagctgg cgcagcggca gcagcatgag ccggaccctc gcatcggccg 121 tgcccctgtc gagtcccgac tactacgaga ggctgggcca actccagcac gggctgcggg 181 acagtgaaaa gaagagattg gacctggaaa agaaacttta tgaatataat cagtctgata 241 catgcagagt taagctgaaa tatgtaaaac taaagaatta tctgaaggaa atatgtgaat 301 ctgaaaagaa ggctcatact cgaaaccaag aatatttaaa gcgatttgag cgtgtccaag 361 ctcatgttgt acacttcacc acaaatacag agaagcttca aaaactgaag ctcgaatatg 421 agactcaaat taagaagatg ctatgctcaa aagatagcct gggactaaaa gaggaactga 481 cagatgaaga cagagaaaag gttgcagtgc aggaggggat taactcagga acagccatgt 541 caagaggatt gtatcaacca gcaacaatct ttatgggccg ccaaatgtca gccatcttaa 601 gcatgagaga tttcagtaca gagcacaaat ctccccagcc cacaaagaac ttttcaattc 661 ctgacccaca ttcacaccga cagacagccc agagcagtaa tgtgacagac agctgtgtag 721 tacaaactag taatgacaca cagtgcttaa ataagtctga caacatagat ggaaaggcat 781 ctcttcagat tggtgagaaa acgccagtca cagccagtgt attgtctgag gaggaacaaa 841 ctcattgctt ggagatagga agtaacacac gtcatggcaa gagtaattta tctgaaggca 901 aaaagtctgc tgaactcaat tccccgttac ggaaagatta agtccagaga acagaaccac 961 tgatttaaag tgtgacagtt ccagcggatc agagggagaa atactgacac gggaacatat 1021 tgaagttgag gaaaaaagag ccagcccgcc agtctctccg ataccagttt cagaatactg 1081 tgaatctgaa aataagtggt ctcaagagaa gcattctcct tgggaaggtg tttcagatca 1141 tcttgctcac agggaaccaa agtcacaaaa gcccttcaga aaaatgcagg aagaggagga 1201 ggaaagttgg agcaccagca gtgaccttac catttcaata agtgaagatg atctgatttt 1261 agagagccca gaaccacagc caaatccagg tggcaagatg gagggagaag atggaataga 1321 ggccttaaaa ttaatccatg ctgagcaaga aagagttgcc ctatccactg aaaaaaattg 1381 tattttgcaa accctaagct ctcctgattc agaaaaggaa tcctccacta acgcaccaac 1441 aagagaacct ggacaaacac cagactcaga cgtaccgagg gcacaggtgg gtcagcatgt 1501 tgccaccttg aaagaacatg ataattctgt caaagaagag gcaacagcat tattgagaaa 1561 agcccttaca gaagagtgtg gccgtaggtc agctattcac agtagtgaat catcttgcag 1621 cttgccatct attctgaatg acaatagtgg aataaaggaa gccaaacctg ctgtatggct 1681 caacagtgtt cctacaaggg aacaagaagt ttcaagtggc tgtggagaca agagcaagaa 1741 agaaaatgtg gctgcagata tcccaatcac agaaacagaa gcctatcagt tgctgaagaa 1801 ggccaccctt caggataata caaatcaaac tgaaaacagg tttcaaaaga cagatgcttc 1861 tgtgtcacac ttgtcaggtt tgaatattgg cagcggtgca ttcgagacaa agacagctaa 1921 caaaattgct tcggaagcta gtttttcatc tagtgaagga agtcctttgt caaggtaaag 1981 ttgtgaaagc ctttctgaat agcagcaaca agatgagaaa tgtcacagcg caatgaatta 2041 aactctggct gcgtattatt ttgttgtatg acttggaggg ttatggtttg ggtttttgtt 2101 tatctaaaat aacagttgaa actttagtct acctttgaaa atatttgcac cagagccaag 2161 tattgttttg cagctgttgt ttccttggtt taagactcaa ttgacacctc agtgaaccac 2221 aaattagcgt ctacagctgc tcgcagtagg actgcttaga gaccacacaa tggaggttgt 2281 cagaaaaagg gcagagagaa aacatcaggc cttaaaagaa ataaagtggc atgtttcttc 2341 tttttgtgac ggctaatata taaactagta attgctggat attcattttt attttcctct 2401 ttttttttaa ccaagtgttt aggctaggtt attctttcct tttctaatac tttcttgctt 2461 attttccata aagaacaaaa tttatctttt cacatttgtc aaactgtagc actcgcttct 2521 tgtaggtttt ttgagctgtg ataagagagt tgtgtgctga atttgtcatt aacataaaat 2581 actaatcaca gtagcttcag gtcacttaga atttatagat gggaatataa gccatcacct 2641 gatgaaatac cctactcttt tgctttgagc taaatattgt ttaaaatggc atagcaactt 2701 tccttttgga acagcattgc tcagtaaaaa ggtgtccttc agatgattat attacatttg 2761 aattaactgc ttgtctctga tgaaatttta gaacaggaac tttacatttc tagtataaca 2821 tataatgttc cataagagaa aatgatttga accagaaatg ctgaattttt taaatgaaaa 2881 aaatcctatt tttattcata ttttataaaa tacaatgttt ttagaacctg gagtatatta 2941 aaatgagatt gaatttctaa aattataagt tttagaaact tgacaagtta agttttagag 3001 aaataactca tttaattttc agaagttatt atttttaatg cctgagtttt cgtccatatt 3061 tttgaaggaa gtgggaggta aatgggacag gaagagtgtt aaagtattat gttattatga 3121 ttgtattata aattcaagtt ctaggtctcc taaaagaaag tttaaaagac agtaaattct 3181 acagataatt ttcagggccg aatgttacca tttggcttaa taatatatag aggcactaaa 3241 aaaactcact tcttcctaaa cagtctttac gtaggttctt tgggaaattt ttaaagacat 3301 tgagaaagca attggatttt gtaaaacatt tctcagtcta ataatttcac atcttgtcta 3361 tattttacta aactaaaatc aagcattttc ctccttcaaa ttgagacaga ggtattttgt 3421 tattagtatc gtttccgtat gaaattaatt tcctaataaa ttacaagtaa tctcatcatc 3481 ccctttaaga aaacaaaaaa aaaaaacaca caaaaaggcc ttgaaggaac tcttggttct 3541 aggcacttga taataatcca gtgatgaaaa ggtctgggtc cagagtgcgt gggtttggcg 3601 tgctgtttgt cacggtttgg ttcttgtgct gggcttggtg ttgttcatat gccaccctgg 3661 gctttggaga gctccagttt tgctgtttgt gctggattca ctgaaatttc ttagaggctt 3721 acatttaagg atcccactta ctgcagtcac tccttgtgct ttattgcttt tacaagtggt 3781 ctcgaaaccc ggtacttgag aataaacata acagtgcagt gctgctgtag cacttttaaa 3841 attcttcttt gctctatttt gtcagtgagc tgatgagcaa ccccaaaaaa aaaaaaaaaa //