LOCUS BC034515 2351 bp mRNA linear ROD 15-JUL-2006 DEFINITION Mus musculus sphingomyelin phosphodiesterase 1, acid lysosomal, mRNA (cDNA clone MGC:25355 IMAGE:4482098), complete cds. ACCESSION BC034515 VERSION BC034515.1 KEYWORDS MGC. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2351) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2351) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: The Cepko Laboratory cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 31 Row: i Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 6755581. FEATURES Location/Qualifiers source 1..2351 /organism="Mus musculus" /mol_type="mRNA" /db_xref="taxon:10090" /clone="MGC:25355 IMAGE:4482098" /tissue_type="Eye, retina, mouse strain C57Bl\6" /clone_lib="NIH_MGC_94" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2351 /gene="Smpd1" /gene_synonym="A-SMase" /gene_synonym="ASM" /gene_synonym="aSMase" /db_xref="GeneID:20597" /db_xref="MGI:MGI:98325" CDS 98..1981 /gene="Smpd1" /gene_synonym="A-SMase" /gene_synonym="ASM" /gene_synonym="aSMase" /codon_start=1 /product="sphingomyelin phosphodiesterase 1, acid lysosomal" /protein_id="AAH34515.1" /db_xref="GeneID:20597" /db_xref="MGI:MGI:98325" /translation="MPHHRASSGQDHLRAGWEQRLERSLPAPRVGLLWMGLGLALVLA LFDSTVLWVPARAYPLPSEGHSVKFSAIAPPLQSAFGWQNLTCPACKVLFTALNHGLK KEPNVARVGSVAIKICKMLNIAPLDVCQSAVHLFEDDVVEVWTRSVLSPSEACGLLLG SSCGHWDIFSTWNISLPSVPKPPPKPPSPPAPGAPVSRVLFLTDLHWDHEYLEGTDPY CADPLCCRRGSGWPPNSQKGAGFWGEYSKCDLPLRTLESLLKGLGPAGPFEMGYWTGD IPAHDVWQQSRQDQLRALTTITDLVRKFLGPVPVYPAVGNHESTPVNGFPPPFIKGNQ SSQWLYEAMAKAWEPWLPADALHTLRIGGFYALTPRPGLRLISLNMNFCSRENFWLLI NSTDPAGQLQWLVEELQAAENRGDKVHIIGHIPPGHCLKSWSWNYYKIIARYENTLAG QFFGHTHVDEFEIFYDEETLSRPLAVAFLAPSATTFINLNPGYRVYQIDGNYPGSSHV VLDHETYILNLTQANAAGGTPSWKRLYRARETYGLPDAMPASWHNLVYRMRDDEQLFQ TFWFLYHKGHPPSEPCGTPCRLATLCAQLSARADSPALCRHLMPNGSLPDANRLWSRP LLC" BASE COUNT 513 a 686 c 620 g 532 t ORIGIN 1 atcggtgtct ccagcgttac ccgggccccg agggccagcc agggcttcgg cctgtggggc 61 ctggaggggc aagccagtcc tgtctacgag cctggcaatg ccccaccaca gagcatcatc 121 cggccaggac cacctcagag ccggctggga gcagagactg gagaggtcct taccggcacc 181 cagagtggga ctcctttgga tggggctggg cttggcgctg gttctggctc tgtttgactc 241 cacggttctt tgggttcctg ccagagctta tcctcttcct tctgaaggcc attctgtcaa 301 attcagtgcc atagcgccgc cgctccagag tgcctttggg tggcagaacc tcacttgccc 361 cgcctgcaaa gtcttattca ctgctctcaa ccatgggctg aagaaggagc ccaatgtggc 421 acgggtaggc tctgtggcca tcaagatatg caagatgctg aacatagcac cactagatgt 481 gtgccagtca gccgtccatc tctttgagga cgatgtggtg gaggtgtgga cacgttcagt 541 tctgagccca tcagaggctt gtggcttgct tctgggctcc tcttgtggac actgggacat 601 cttttcgact tggaacatct ctttgccatc agtgccgaag ccacccccaa agccaccgag 661 cccaccagcc cccggtgccc ctgtcagccg tgtcctcttc cttactgatc tacactggga 721 ccatgagtac ctggagggca cagaccctta ctgtgcagat ccactttgct gccgccgggg 781 gtccggatgg ccacccaact cccagaaggg ggctgggttc tggggcgagt acagcaagtg 841 tgacctgccc ttgcgaacgc tagaaagcct gttgaaagga ctgggccctg ccggcccttt 901 tgaaatgggg tactggacgg gagatatccc tgcccatgat gtctggcaac agtctcgcca 961 agatcagctg agggccctga ccaccatcac agacctcgtg aggaagttct tgggcccagt 1021 gccagtgtac cctgctgtgg gcaaccatga gagcactcct gtcaatggct tccctcctcc 1081 cttcataaag ggaaaccaat cttcacaatg gctctatgaa gccatggcca aggcatggga 1141 accctggtta ccagctgatg cccttcacac cctaagaatt gggggcttct atgccctcac 1201 cccacgccct ggcctccgcc tcatctctct caatatgaat ttttgttccc gtgagaactt 1261 ttggctcttg atcaactcca cagatcctgc tggacaactc cagtggctgg tggaggagct 1321 tcaggctgct gagaatcgag gagacaaagt gcatataatt ggccacatcc ctccaggaca 1381 ttgtcttaag agctggagct ggaattatta caaaatcata gccaggtatg aaaacactct 1441 ggccggtcag ttctttggcc acactcacgt ggatgagttt gagatcttct atgatgagga 1501 aactctgagc cgaccactag ctgtagcctt cctggcgccc agtgctacaa cctttatcaa 1561 ccttaaccct ggctaccgag tttaccaaat agatggaaac taccccggaa gctctcatgt 1621 ggtcctggac cacgagacct acatcttgaa tctgacccag gccaacgcag caggaggcac 1681 accaagctgg aagcgcctct acagggctcg agaaacctat ggacttccag atgcgatgcc 1741 tgcctcctgg cacaacctgg tctaccgcat gagggatgat gagcaactct tccagacctt 1801 ctggtttctc taccataagg gccacccacc ttcagagccc tgcggcacac cctgccgcct 1861 ggccactctg tgtgcccagc tctcagcccg agcagacagc cctgctttgt gtcgccactt 1921 gatgcccaat gggagcctcc cagatgctaa taggttgtgg tcacgccccc tgttgtgcta 1981 gtattccatg ttccagactg gggaaagttc atgtatcaga aaagggatac attcccgagt 2041 gctgcttatc tacctgaggc aaaagcttcg ggggaaggag ccagccaggc cagggaaaca 2101 agccgcctca tgagagcttg tttggttaca ctggaggagg ttttggctgt cctacttatg 2161 cccaggatct ggattacccc tggggctgat gtctgacctg ggctttgtcg agggctcagt 2221 gctctggata gtcagacagg agctattgcc cgagcctggg ctaatggacc tctgaaccct 2281 gtactgttac ctgatcctgc aaggctgtta aaataaagag acacacttca gactcaaaaa 2341 aaaaaaaaaa a //