LOCUS BC017728 3261 bp mRNA linear HUM 03-NOV-2008 DEFINITION Homo sapiens Rap guanine nucleotide exchange factor (GEF) 3, mRNA (cDNA clone MGC:21410 IMAGE:4414360), complete cds. ACCESSION BC017728 VERSION BC017728.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3261) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3261) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 27 Row: i Column: 5 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 45269150. FEATURES Location/Qualifiers source 1..3261 /db_xref="H-InvDB:HIT000038107" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:21410 IMAGE:4414360" /tissue_type="Kidney, hypernephroma" /clone_lib="NIH_MGC_89" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3261 /gene="RAPGEF3" /gene_synonym="bcm910" /gene_synonym="CAMP-GEFI" /gene_synonym="EPAC" /gene_synonym="EPAC1" /gene_synonym="HSU79275" /db_xref="GeneID:10411" /db_xref="HGNC:HGNC:16629" /db_xref="MIM:606057" CDS 165..2936 /gene="RAPGEF3" /gene_synonym="bcm910" /gene_synonym="CAMP-GEFI" /gene_synonym="EPAC" /gene_synonym="EPAC1" /gene_synonym="HSU79275" /codon_start=1 /product="Rap guanine nucleotide exchange factor (GEF) 3" /protein_id="AAH17728.2" /db_xref="GeneID:10411" /db_xref="HGNC:HGNC:16629" /db_xref="MIM:606057" /translation="MKVGWPGESCWQVGLPVEDSPALGAPRVGALPDVVPEGTLLNMV LRRMHRPRSCSYQLLLEHQRPSCIQGLRWTPLTNSEESLDFSESLEQASTERVLRAGR QLHRHLLATCPNLIRDRKYHLRLYRQCCSGRELVDGILALGLGVHSRSQVVGICQVLL DEGALCHVKHDWAFQDRDAQFYRFPGPEPEPVGTHEMEEELAEAVALLSQRGPDALLT VALRKPPGQRTDEELDLIFEELLHIKAVAHLSNSVKRELAAVLLFEPHSKAGTVLFSQ GDKGTSWYIIWKGSVNVVTHGKGLVTTLHEGDDFGQLALVNDAPRAATIILREDNCHF LRVDKQDFNRIIKDVEAKTMRLEEHGKVVLVLERASQGAGPSRPPTPGRNRYTVMSGT PEKILELLLEAMGPDSSAHDPTETFLSDFLLTHRVFMPSAQLCAALLHHFHVEPAGGS EQERSTYVCNKRQQILRLVSQWVALYGSMLHTDPVATSFLQKLSDLVGRDTRLSNLLR EQWPERRRCHRLENGCGNASPQMKARNLPVWLPNQDEPLPGSSCAIQVGDKVPYDICR PDHSVLTLQLPVTASVREVMAALAQEDGWTKGQVLVKVNSAGDAIGLQPDARGVATSL GLNERLFVVNPQEVHELIPHPDQLGPTVGSAEGLDLVSAKDLAGQLTDHDWSLFNSIH QVELIHYVLGPQHLRDVTTANLERFMRRFNELQYWVATELCLCPVPGPRAQLLRKFIK LAAHLKEQKNLNSFFAVMFGLSNSAISRLAHTWERLPHKVRKLYSALERLLDPSWNHR VYRLALAKLSPPVIPFMPLLLKDMTFIHEGNHTLVENLINFEKMRMMARAARMLHHCR SHNPVPLSPLRSRVSHLHEDSQVARISTCSEQSLSTRSPASTWAYVQQLKVIDNQREL SRLSRELEP" BASE COUNT 682 a 983 c 999 g 597 t ORIGIN 1 ctgctgccct ggcagccagt ccagctaggc actggcccag ttcactgtac ctggacttac 61 ccactggcac cttccggatc cccttatcaa agctgatggg ggtcgctggg gaccccccag 121 ccttttgcta gagcctgcac ggctgtgcga gcttgaaaag aaacatgaag gtgggctggc 181 caggtgagag ctgctggcag gtgggcctgc ctgtggagga tagcccagct ctgggagcac 241 cgcgggtggg agccctccct gacgtggtgc cggaggggac actactcaac atggtgttga 301 gaaggatgca ccggccccga agctgctcct accagctgct gctggagcac cagcgtccga 361 gctgcatcca ggggctgcgc tggacaccac tcaccaacag cgaggagtcc ctggatttca 421 gcgagagcct ggagcaggcc tccacagagc gggtgctcag ggctgggagg cagctgcatc 481 ggcatctgct ggccacctgc ccaaacctca tccgagaccg gaagtaccac cttaggctct 541 atcggcagtg ctgctctggc cgggagctgg tggatgggat cttggccctg ggacttgggg 601 tccattcccg gagccaagtt gtgggaatct gccaggtgct gctggatgaa ggtgccctct 661 gccatgtgaa acacgactgg gccttccagg accgagatgc ccaattctac cggttccccg 721 ggcccgagcc cgagcccgtg ggaactcatg agatggagga ggagttggcc gaagctgtgg 781 ccctgctctc ccagcggggg cctgacgccc tgctcactgt ggcacttcga aagcccccag 841 gtcagcgcac ggatgaagag ctggacctca tctttgagga gctgctgcac atcaaggctg 901 tggcccacct ctccaactcg gtgaagcgag aattagcggc tgttctgctc tttgaaccac 961 acagcaaggc agggaccgtg ttgttcagcc agggggacaa gggcacttcg tggtacatta 1021 tctggaaggg atctgtcaac gtggtgaccc atggcaaggg gctggtgacc accctgcatg 1081 agggagatga ttttggacag ctggctctgg tgaatgatgc accccgggca gccaccatca 1141 tcctgcgaga agacaactgt catttcctgc gtgtggacaa gcaggacttc aaccgtatca 1201 tcaaggatgt ggaggcaaag accatgcggc tggaagaaca tggcaaagtg gtgctggtgc 1261 tggagagagc ctctcagggc gccggccctt cccgaccccc aaccccaggc aggaaccggt 1321 atacagtgat gtctggcacc ccagagaaga tcctagagct tctgttggag gccatgggac 1381 cagattccag tgctcatgac ccaacagaga cattcctcag cgacttcctc ctgacccaca 1441 gggtcttcat gcccagcgcc caactctgcg ctgcccttct gcaccacttc catgtggagc 1501 ctgcgggtgg cagcgagcag gagcgcagca cctacgtctg caacaagagg cagcagatct 1561 tgcggctggt cagccagtgg gtggccctgt atggctccat gctccacact gaccctgtgg 1621 ccaccagctt cctccagaaa ctctcagacc tggtgggcag ggacacccga ctcagcaacc 1681 tgctgaggga gcagtggcca gagaggcggc gatgccacag gttggagaat ggctgtggga 1741 atgcatctcc tcagatgaag gcccggaact tgcctgtttg gctccccaac caggacgagc 1801 cccttcctgg cagcagctgt gccatccaag ttggggataa agtcccctat gacatctgcc 1861 ggccagacca ctcagtgttg accctgcagc tgcctgtgac agcctccgtg agagaggtga 1921 tggcagcgtt ggcccaggag gatggctgga ccaaggggca ggtgctggtg aaggtcaatt 1981 ctgcaggtga tgccattggc ctgcagccag atgcccgtgg tgtggccaca tctctggggc 2041 tcaatgagcg tctctttgtt gtcaacccac aggaagtgca tgagctgatc ccacaccctg 2101 accagctggg gcccactgtg ggctctgctg aggggctgga cctggtgagt gccaaggacc 2161 tggcaggcca gctgacggac cacgactgga gcctcttcaa cagtatccac caggtggagc 2221 tgatccacta tgtgctgggc ccccagcatc tgcgggatgt caccaccgcc aacctggagc 2281 gcttcatgcg ccgcttcaat gagctgcagt actgggtggc caccgagctg tgtctctgcc 2341 ccgtgcccgg cccccgggcc cagctgctca ggaagttcat taagctggcg gcccacctca 2401 aggagcagaa gaatctcaat tccttctttg ccgtcatgtt tggcctcagc aactcggcca 2461 tcagccgcct agcccacacc tgggagcggc tgcctcacaa agtccggaag ctgtactccg 2521 ccctcgagag gctgctggat ccctcatgga accaccgggt ataccgactg gccctcgcca 2581 agctctcccc tcctgtcatc cccttcatgc cccttcttct caaagacatg accttcattc 2641 atgagggaaa ccacacacta gtggagaatc tcatcaactt tgagaagatg agaatgatgg 2701 ccagagccgc gcggatgctg caccactgcc gaagccacaa ccctgtgcct ctctcaccac 2761 tcagaagccg agtttcccac ctccacgagg acagccaggt ggcgaggatt tccacatgct 2821 cggagcagtc cctgagcacc cggagtccag ccagcacctg ggcttatgtc cagcagctga 2881 aggtcattga caaccagcgg gaactctccc gcctctcccg agagctggag ccatgaggag 2941 gggctgggac tggagctgga gcaggcactt gcagccggga aagccagggt gtgccgggcc 3001 aagatactca caggctggcc acagctgggc aaggctctcc gtggagtgga ctcgagtccc 3061 tggagcaggc agtgtggagg cagccatccc ctgtgatgac tggcagctaa ggaggacctc 3121 ggagtggacc cgagccagga ataacgaatg acccaaggcc aaggaaggga ggacagagag 3181 gccccaggag tgggtggaga gtggagtgtg ctgggacgtt gtgtgcaata gagaggtctc 3241 cacaccaaaa aaaaaaaaaa a //