LOCUS BC016079 2054 bp mRNA linear ROD 27-OCT-2006 DEFINITION Mus musculus X-box binding protein 1, mRNA (cDNA clone MGC:27583 IMAGE:4489182), complete cds. ACCESSION BC016079 VERSION BC016079.1 KEYWORDS MGC. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2054) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2054) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (22-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Gilbert Smith, Ph.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 38 Row: e Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 13775155. FEATURES Location/Qualifiers source 1..2054 /organism="Mus musculus" /mol_type="mRNA" /strain="FVB/N" /db_xref="taxon:10090" /clone="MGC:27583 IMAGE:4489182" /tissue_type="Mammary tumor. Metallothionien-TGF alpha model. 10 month old virgin mouse. Taken by biopsy." /clone_lib="NCI_CGAP_Mam1" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2054 /gene="Xbp1" /gene_synonym="TREB-5" /gene_synonym="TREB5" /gene_synonym="XBP-1" /db_xref="GeneID:22433" /db_xref="MGI:MGI:98970" CDS 320..1390 /gene="Xbp1" /gene_synonym="TREB-5" /gene_synonym="TREB5" /gene_synonym="XBP-1" /codon_start=1 /product="Xbp1 protein" /protein_id="AAH16079.1" /db_xref="GeneID:22433" /db_xref="MGI:MGI:98970" /translation="MVVVAAAPSAATAAPKVLLLSGQPASGGRALPLMVPGPRAAGSE ASGTPQARKRQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEEN HKLQLENQLLREKTHGLVVENQELRTRLGMDTLDPDEVPEVEAKQVQAQLSPPQNIFP WTLTLASSDSESDILLGILDKLDPVMFFKCPSPESASLEELPEVYPEGPSSLPASLSL SVGTSSAKLEAINELIRFDHVYTKPLVLEIPSETESQTNVVVKIEEAPLSSSEEDHPE FIVSVKKEPLEDDFIPELGISNLLSSSHCLRPPSCLLDAHSDCGYEGSPSPFSDMSSP LGTDHSWEDTFANELFPQLISV" BASE COUNT 506 a 554 c 521 g 473 t ORIGIN 1 ggcctgagag gacagcctgg caatcctcag ccggggtggg gacgtctgcc gaagatcctt 61 ggactccagc aaccagtggt cgccaccgtc catccaccct aaggcccagt ttgcacggcg 121 gagaacagct gtgcagccac gctggacact caccccgccc gagttgagcc cgcccccggg 181 actacaggac caataagtga tgaatatacc cgcgcgtcac ggagcaccgg ccaatcgcgg 241 acggccacga ccctagaaag gctgggcgcg gcaggaggcc acggggcggt ggcggcgctg 301 gcgtagacgt ttcctggcta tggtggtggt ggcagcggcg ccgagcgcgg ccacggcggc 361 ccccaaagtg ctactcttat ctggccagcc cgcctccggc ggccgggcgc tgccgctcat 421 ggtacccggt ccgcgggcag cagggtcgga ggcgagcggg acaccgcagg ctcgcaagcg 481 gcagcggctc acgcacctga gcccggagga gaaagcgctg cggaggaaac tgaaaaacag 541 agtagcagcg cagactgctc gagatagaaa gaaagcccgg atgagcgagc tggagcagca 601 agtggtggat ttggaagaag agaaccacaa actccagcta gaaaatcagc ttttacggga 661 gaaaactcac ggccttgtgg ttgagaacca ggagttaaga acacgcttgg gaatggacac 721 gctggatcct gacgaggttc cagaggtgga ggccaagcag gtgcaggccc agttgtcacc 781 tccccagaac atcttcccat ggactctgac actcgcctct tcagattctg agtctgatat 841 ccttttgggc attctggaca agttggaccc tgtcatgttt ttcaaatgtc cttccccaga 901 gtctgctagt ctggaggaac tcccagaggt ctacccagaa ggacctagtt ccttaccagc 961 ctccctttct ctgtcagtgg ggacctcatc agccaagctg gaagccatta atgaactcat 1021 tcgttttgac catgtataca ccaagcctct agttttagag atcccctctg agacagagag 1081 tcaaactaac gtggtagtga aaattgagga agcacctcta agctcttcag aagaggatca 1141 ccctgaattc attgtctcag tgaagaaaga gcctttggaa gatgacttca tcccagagct 1201 gggcatctca aacctgcttt catccagcca ttgtctgaga ccaccttctt gcctgctgga 1261 cgctcacagt gactgtggat atgagggctc cccttctccc ttcagtgaca tgtcttctcc 1321 acttggtaca gaccactcct gggaggatac ttttgccaat gaacttttcc cccagctgat 1381 tagtgtctaa agagccacat aacactgggc ccctttccct gaccatcaca ttgcctagag 1441 gatagcatag gcctgtctct ttcgttaaaa gccaaagtag aggctgtctg gccttagaag 1501 aattcctcta aagtatttca aatctcatag atgacttcca agtattgtcg tttgacactc 1561 agctgtctaa ggtattcaaa ggtattccag tactacagct tttgagattc tagtttatct 1621 taaaggtggt agtatactct aaatcgcagg gagggtcatt tgacagtttt ttcccagcct 1681 ggcttcaaac tatgtagccg aggctaggca gaaacttctg accctcttga ccccacctcc 1741 caagtgctgg gcttcaccag gtgtgcacct ccacacctgc cccccgacat gtcaggtgga 1801 catgggattc atgaatggcc cttagcattt ctttctccac tctctgcttc ccaggtttcg 1861 taacctgagg gggcttgttt tcccttatgt gcattttaaa tgaagatcaa gaatctttgt 1921 aaaatgatga aaatttacta tgtaaatgct tgatggatct tcttgctagt gtagcttcta 1981 gaaggtgctt tctccattta tttaaaacta cccttgcaat taaaaaaaaa gcaacacaga 2041 aaaaaaaaaa aaaa //