LOCUS BC015024 1924 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens alkB, alkylation repair homolog 1 (E. coli), mRNA
(cDNA clone IMAGE:3910971), partial cds.
ACCESSION BC015024
VERSION BC015024.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1924)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1924)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: h Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5174384.
FEATURES Location/Qualifiers
source 1..1924
/db_xref="H-InvDB:HIT000088540"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3910971"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1924
/gene="ALKBH1"
/gene_synonym="ABH"
/gene_synonym="alkB"
/gene_synonym="hABH"
/db_xref="GeneID:8846"
/db_xref="HGNC:HGNC:17911"
/db_xref="MIM:605345"
CDS <1..1144
/gene="ALKBH1"
/gene_synonym="ABH"
/gene_synonym="alkB"
/gene_synonym="hABH"
/codon_start=2
/product="ALKBH1 protein"
/protein_id="AAH15024.1"
/db_xref="GeneID:8846"
/db_xref="HGNC:HGNC:17911"
/db_xref="MIM:605345"
/translation="SVATLATEPGEDAFRKLFRFYRQSRPGTADLEGVIDFSAAHAAR
GKGPGAQKVIKSQLNVSSVSEQNAYRAGLQPVSKWQAYGLKGYPGFIFIPNPFLPGYQ
WHWVKQCLKLYSQKPNVCNLDKHMSKEETQDLWEQSKEFLRYKEATKRRPRSLLEKLR
WVTVGYHYNWDSKKYSADHYTPFPSDLGFLSEQVAAACGFEDFRAEAGILNYYRLDST
LGIHVDRSELDHSKPLLSFSFGQSAIFLLGGLQRDEAPTAMFMHSGDIMIMSGFSRLL
NHAVPRVLPNPEGEGLPHCLEAPLPAVLPRDSMVEPCSLEDWQVCASYLKTARVNMTV
RQVLATDQNFPLEPIEDEKRDISTEGFCHLDDQNSEVKRARINPDS"
BASE COUNT 521 a 468 c 427 g 508 t
ORIGIN
1 ctctgtggcg actctggcga ctgagcccgg ggaggacgcc tttcggaaac ttttccgctt
61 ctaccgtcag agccggcccg ggaccgcaga cctggaaggg gtcatcgact tctcggcggc
121 ccacgcagcc cgtggcaagg gtcctggtgc ccaaaaggtg atcaaatctc agctaaatgt
181 gtcttctgtc agtgagcaga atgcatatag agcaggtctt cagcccgtca gcaagtggca
241 agcctatgga ctcaaaggct atcctgggtt tatttttatc ccaaacccct tcctcccagg
301 ttaccagtgg cactgggtga aacagtgcct taagttatat tcccagaaac ctaatgtatg
361 taacctggac aaacacatgt ctaaagaaga gacccaagat ctgtgggaac agagcaaaga
421 gttcctgagg tataaagaag cgactaaacg gagaccccga agtttactgg agaaactgcg
481 ttgggtgacc gtaggctacc attataactg ggacagtaag aaatactcag cagatcatta
541 cacacctttc ccttctgacc tgggtttcct ctcagagcaa gtagccgctg cctgtggatt
601 tgaggatttc cgagctgaag cagggatcct gaattactac cgcctggact ccacactggg
661 aatccacgta gacagatctg agctagatca ctccaaaccc ttgctgtcat tcagctttgg
721 acagtccgcc atctttctcc tgggtggtct tcaaagggat gaggccccca cggccatgtt
781 tatgcacagt ggtgacatca tgataatgtc gggtttcagc cgcctcttga accacgcagt
841 ccctcgtgtc cttccaaatc cagaagggga aggcctgcct cactgcctag aggcacctct
901 ccctgctgtc ctcccgagag attcaatggt agagccttgt tctttggagg actggcaggt
961 gtgtgccagt tacttgaaga ccgctcgtgt taacatgact gtccgacagg tcctggccac
1021 agaccagaat ttccctctag aacccatcga ggatgaaaaa agagacatca gtacagaagg
1081 tttctgccat ctggatgacc agaatagcga agtaaaacgg gccaggataa accctgacag
1141 ctgagacttg gagatcccat cctttttact caggcacctg cttaccgtaa atgatcatgt
1201 tattgtgtat tgccgtggac ttcagcaccc agacaagcca aaaacagaga cagggaagaa
1261 ctcattgttg atcacactgt tgccttggaa cccacgcaga agtaaactca gccactttgc
1321 tcagagaagt gtttgacatg gtctgttcct agttacatgt tggctgtaat gtatgttgag
1381 aagtcagtcc aaggaggtat gttcttccac aacagccttc tcagcctctg ctatttcctt
1441 tgaggaaggt agaagtgagt ttccatgttt gcagagtatt taaatacctc agattttatt
1501 aatgagaaat acagtacccc tccctccact ccatctggta atttatggta aaattgtggt
1561 tctgtgaacc agctattagt ctcatcttct taactccctc aggcatcatc aaattctttg
1621 atcttctctt ccacctctct ggctctcatg gaagaatcct ttacacatga aaacaatgga
1681 actggaaaat cttgtctttt agaaaagaaa ttaatcacaa ctatctctct tgcctaaaag
1741 ataaatatag gtaaacccaa ggaaagggga atttagtttc tctacatgtc atttcggtct
1801 ccaaactccc tgttggcttt ttaatgcaat tttaattgtt ggaataaaaa agtcccaagg
1861 gtgttttgtt actgttttct ccatgaataa actcacttga ttttaaatta aaaaaaaaaa
1921 aaaa
//