LOCUS BC014814 2078 bp mRNA linear ROD 04-AUG-2006 DEFINITION Mus musculus sorting nexin 9, mRNA (cDNA clone MGC:6327 IMAGE:3257422), complete cds. ACCESSION BC014814 VERSION BC014814.1 KEYWORDS MGC. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2078) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2078) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lothar Hennighausen Ph.D., Priscilla Furth Ph.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 6 Row: e Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 29568083. FEATURES Location/Qualifiers source 1..2078 /organism="Mus musculus" /mol_type="mRNA" /strain="NMRI" /db_xref="taxon:10090" /clone="MGC:6327 IMAGE:3257422" /tissue_type="Mammary tumor. WAP-Tag model. 5 months old, gross tissue." /clone_lib="NCI_CGAP_Mam4" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2078 /gene="Snx9" /gene_synonym="SDP1" /gene_synonym="SH3PX1" /db_xref="GeneID:66616" /db_xref="MGI:MGI:1913866" CDS 156..1943 /gene="Snx9" /gene_synonym="SDP1" /gene_synonym="SH3PX1" /codon_start=1 /product="sorting nexin 9" /protein_id="AAH14814.1" /db_xref="GeneID:66616" /db_xref="MGI:MGI:1913866" /translation="MATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKN NKGEQGLVPTDYVEILPNDGKDPFSCGNSVADQAFLDSLTASTAQTNSSSANSNNQVG GGNDPWTAWNAPKPGNWDSSDAWGSRTDGTSAQRNSSANNWDTGFGHPQAYQGPATGD DDEWDEDWDDPKSSSPYFKDSEPAEAGGIQRGNSRAGASSMKLPLNKFPGFAKPGMEQ YLLAKQLAKPKEKIAIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTP TNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAW MTRMCRHPVVSESEVFQQFLNFRDEKEWKTGKRKAEKDELVGVMIFSTMEPEAPDLDL IEIEQKCDAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLAAVFS SSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIG AHKGAIEKVKESDKLVATSKITPQDKQTMVKRVGTMSYALQAEMNHFHSNRIYDYNSV IRLYLEQQVQFYETIAEKLRQALSRFPVM" BASE COUNT 600 a 520 c 565 g 393 t ORIGIN 1 ggggccggag cgccgagagc aggactgagg cggagccgcc gcgccgggcc gcagccaccg 61 aaccgcagac ggagtcgacc tccccgcccg cttagggccg aagctccgca gcacgggaga 121 ccagccggcc cgccggggcc ggggaaccgc ccgccatggc caccaaggct cgggtcatgt 181 acgactttgc tgctgagcct ggaaacaatg agctgaccgt tactgaagga gaaatcatca 241 cagttacaaa cccgaatgtt ggtggaggat ggctggaagg aaagaacaac aaaggagagc 301 aggggcttgt tcctactgac tacgtggaaa ttttaccaaa cgatggaaaa gatccgtttt 361 cttgtgggaa ttcagtagcc gaccaagctt tcctcgattc cctgacagct agcacagctc 421 aaaccaactc atcttctgcc aacagcaata accaggttgg tggtggcaat gacccctgga 481 cagcctggaa tgctcccaaa cctgggaact gggacagctc cgatgcctgg ggctccagga 541 cagacggaac tagcgctcag aggaacagca gcgccaacaa ctgggacacg ggctttggcc 601 acccacaggc ctaccaagga ccagcaactg gtgatgatga cgaatgggat gaagactggg 661 acgaccccaa gtcctcctca ccttacttca aggattcaga accagctgaa gcagggggca 721 tccagcgggg aaacagtcgt gcgggtgcct cctccatgaa gctgcccctt aacaaatttc 781 ctggatttgc aaaacctggc atggagcagt acttgttggc caagcagcta gcaaaaccca 841 aagagaaaat cgccatcatc gttggagatt atggccctat gtgggtttat cctacctcta 901 cgtttgactg tgtggtagct gatccccgga aaggttccaa aatgtacggt ctgaagagct 961 acattgagta tcagctaaca cccactaaca ctaaccgatc tgtaaaccac agatataagc 1021 actttgattg gttatatgag cgtctcctgg ttaagtttgg gtctgccatt ccgatccctt 1081 ctcttccaga caagcaggtc acaggtcgct ttgaagagga atttatcaaa atgcggatgg 1141 agcggctcca ggcctggatg accaggatgt gccggcaccc ggtggtgtca gaaagtgaag 1201 ttttccagca gttcctgaat ttccgagatg agaaggaatg gaagactgga aagaggaagg 1261 ctgagaaaga cgaactggtg ggagtgatga tattttccac catggaacca gaggctcctg 1321 acttggattt gatagaaata gaacagaagt gtgacgctgt ggggaagttc accaaggcca 1381 tggatgacgg cgtgaaggag ctgctgacgg tggggcagga gcactggaag cgctgcacag 1441 ggcccttacc caaggagtat cagaagatag ggaaggctct gcagagctta gcggcagtgt 1501 tcagctccag cggttatcaa ggagagaccg accttaacga tgcaatcaca gaagctggga 1561 agacgtatga ggagatcgcc agccttgtgg cagagcagcc aaagaaggac ctccacttcc 1621 tgatggagtg caaccatgag tacaaaggct ttctcggctg cttcccggac atcattggtg 1681 cccacaaggg agcaatagaa aaagtgaaag aaagtgataa gctggttgca actagtaaaa 1741 ttactcccca agacaagcag accatggtga agagagttgg caccatgtct tacgctctgc 1801 aagctgagat gaatcacttt cacagtaacc ggatctatga ttacaacagt gtcatccgcc 1861 tctacctgga gcagcaagtg cagttctatg aaacaatcgc agaaaagctg aggcaggccc 1921 tcagccgctt cccggttatg taaaccagaa tggaacacaa gagaactccg aagtgcttca 1981 tttacctggg gcaatgcgat tcaattccct cccctccccg ccccccatca taagagaaaa 2041 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa //