LOCUS BC012850 2849 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens Kv channel interacting protein 3, calsenilin, mRNA
(cDNA clone MGC:18289 IMAGE:4179275), complete cds.
ACCESSION BC012850
VERSION BC012850.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2849)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2849)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: i Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27894379.
FEATURES Location/Qualifiers
source 1..2849
/db_xref="H-InvDB:HIT000035994"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:18289 IMAGE:4179275"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2849
/gene="KCNIP3"
/gene_synonym="DREAM"
/gene_synonym="KCHIP3"
/gene_synonym="MGC18289"
/db_xref="GeneID:30818"
/db_xref="HGNC:HGNC:15523"
/db_xref="MIM:604662"
CDS 35..805
/gene="KCNIP3"
/gene_synonym="DREAM"
/gene_synonym="KCHIP3"
/gene_synonym="MGC18289"
/codon_start=1
/product="Kv channel interacting protein 3, calsenilin"
/protein_id="AAH12850.1"
/db_xref="GeneID:30818"
/db_xref="HGNC:HGNC:15523"
/db_xref="MIM:604662"
/translation="MQPAKEVTKASDGSLLGDLGHTPLSKKEGIKWQRPRLSRQALMR
CCLVKWILSSTAPQGSDSSDSELELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGFKN
ECPTGLVDEDTFKLIYAQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLR
GTVHEKLKWAFNLYDINKDGYITKEEMLAIMKSIYDMMGRHTYPILREDAPAEHVERF
FEKMDRNQDGVVTIEEFLEACQKDENIMSSMQLFENVI"
BASE COUNT 613 a 881 c 845 g 510 t
ORIGIN
1 gggaggctgg caacagtttt cttcagcgcc caggatgcag ccggctaagg aagtgacaaa
61 ggcgtcggac ggcagcctcc tgggggacct cgggcacaca ccacttagca agaaggaggg
121 tatcaagtgg cagaggccga ggctcagccg ccaggctttg atgagatgct gcctggtcaa
181 gtggatcctg tccagcacag ccccacaggg ctcagatagc agcgacagtg agctggagct
241 gtccacggtg cgccaccagc cagaggggct ggaccagctg caggcccaga ccaagttcac
301 caagaaggag ctgcagtctc tctacagggg ctttaagaat gagtgtccca cgggcctggt
361 ggacgaagac accttcaaac tcatttacgc gcagttcttc cctcagggag atgccaccac
421 ctatgcacac ttcctcttca acgcctttga tgcggacggg aacggggcca tccactttga
481 ggactttgtg gttggcctct ccatcctgct gcggggcaca gtccacgaga agctcaagtg
541 ggcctttaat ctctacgaca ttaacaagga tggctacatc accaaagagg agatgctggc
601 catcatgaag tccatctatg acatgatggg ccgccacacc taccccatcc tgcgggagga
661 cgcgccggcg gagcacgtgg agaggttctt cgagaaaatg gaccggaacc aggatggggt
721 agtgaccatt gaagagttcc tggaggcctg tcagaaggat gagaacatca tgagctccat
781 gcagctgttt gagaatgtca tctaggacac gtccaaagga gtgcatggcc acagccacct
841 ccacccccaa gaaacctcca tcctgccagg agcagcctcc aagaaacttt taaaaaatag
901 atttgcaaaa agtgaacaga ttgctacaca cacacacaca cacacacaca cacacacaca
961 cacagccatt catctgggct ggcagagggg acagagttca gggaggggct gagtctggct
1021 aggggccgag tccaggagcc ccagccagcc cttcccaggc cagcgaggcg aggctgcctc
1081 tgggtgagtg gctgacagag caggtctgca ggccaccagc tgctggatgt caccaagaag
1141 gggctcgagt gcccctgcag gggagggtcc aatctccggt gtgagcccac ctcgtcccgt
1201 tctccattct gctttcttgc cacacagtgg gccggcccca ggctcccctg gtctcctccc
1261 cgtagccact ctctgcccac tacctatgct tctagaaagc ccctcacctc aggaccccag
1321 agggaccagc tggggggcag gggggagagg gggtaatgga ggccaagcct gcagctttct
1381 ggaaattctt ccctgggggt cccaggatcc cctgctactc cactgacctg gaagagctgg
1441 gtaccaggcc acccactgtg gggcaagcct gagtggtgag gggccactgg gccccattct
1501 ccctccatgg caggaaggcg ggggatttca agtttaggga ttgggtcgtg gtggagaatc
1561 tgagggcact ctctgccagc tccacagggt gggatgagcc tctccttgcc ccagtcctgg
1621 ttcagtggga atgcagtggg tggggctgta cacaccctcc agcacagact gttccctcca
1681 aggtcctctt aggtcccggg aggaacgtgg ttcagagact ggcagccagg gagcccgggg
1741 cagagctcag aggagtctgg gaaggggcgt gtccctcctc ttcctgtagt gcccctccca
1801 tggcccagca gcttggctga gccccctctc ctgaagcagt gtcgccgtcc ctctgccttg
1861 cacaaaaagc acaagcattc cttagcagct caggcgcagc cctagtggga gcccagcaca
1921 ctgcttctcg gaggccaggc cctcctgctg gctgaggctt gggcccagta gccccaatat
1981 ggtggccctg gggaagaggc cttgggggtc tgctctgtgc ctgggatcag tggggcccca
2041 aagcccagcc cggctgacca acattcaaaa gcacaaaccc tggggactct gcttggctgt
2101 cccctccatc tggggatgga gaatgccagc ccaaagctgg agccaatggt gagggctgag
2161 agggctgtgg ctgggtggtc agcagaaacc cccaggagga gagagatgct gctcccgcct
2221 gattggggcc tcacccagaa ggaacccggt cccaggccgc atggcccctc caggaacatt
2281 cccacataat acattccatc acagccagcc cagctccact cagggctggc ccggggagtc
2341 cccgtgtgcc ccaagaggct agccccaggg tgagcagggc cctcagagga aaggcagtat
2401 ggcggaggcc atgggggccc ctcggcattc acacacagcc tggcctcccc tgcggagctg
2461 catggacgcc tggctccagg ctccaggctg actgggggcc tctgcctcca ggagggcatc
2521 agctttccct ggctcaggga tcttctccct cccctcaccc gctgcccagc cctcccagct
2581 ggtgtcactc tgcctctaag gccaaggcct caggagagca tcaccaccac acccctgccg
2641 gccttggcct tggggccaga ctggctgcac agcccaacca ggaggggtct gcctcccacg
2701 ctgggacaca gaccggccgc atgtctgcat ggcagaagcg tctcccttgg ccacggcctg
2761 ggagggtggt tcctgttctc agcatccact aatattcagt cctgtatatt ttaataaaat
2821 aaacttgaca aaggaaaaaa aaaaaaaaa
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