LOCUS BC009471 2946 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens alpha-methylacyl-CoA racemase, mRNA (cDNA clone
MGC:3743 IMAGE:2958112), complete cds.
ACCESSION BC009471
VERSION BC009471.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2946)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2946)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: l Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42822892.
FEATURES Location/Qualifiers
source 1..2946
/db_xref="H-InvDB:HIT000034387"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3743 IMAGE:2958112"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2946
/gene="AMACR"
/gene_synonym="RACE"
/db_xref="GeneID:23600"
/db_xref="HGNC:HGNC:451"
/db_xref="MIM:604489"
CDS 13..609
/gene="AMACR"
/gene_synonym="RACE"
/codon_start=1
/product="alpha-methylacyl-CoA racemase"
/protein_id="AAH09471.1"
/db_xref="GeneID:23600"
/db_xref="HGNC:HGNC:451"
/db_xref="MIM:604489"
/translation="MALQGISVMELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVS
RLGRGKRSLVLDLKQPRGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRL
IYARLSGFGQSGSFCRLAGHDINYLALSGGRNSIFKFFSVENSEIESVGSTSRTEHVG
WWSTFLYDLQDSRWGIHGCWSNRTPVLRAADQRTWTKV"
BASE COUNT 839 a 604 c 675 g 828 t
ORIGIN
1 ctgggaagcg ccatggcact gcagggcatc tcggtcatgg agctgtccgg cctggccccg
61 ggcccgttct gtgctatggt cctggctgac ttcggggcgc gtgtggtacg cgtggaccgg
121 cccggctccc gctacgacgt gagccgcttg ggccggggca agcgctcgct agtgctggac
181 ctgaagcagc cgcggggagc cgccgtgctg cggcgtctgt gcaagcggtc ggatgtgctg
241 ctggagccct tccgccgcgg tgtcatggag aaactccagc tgggcccaga gattctgcag
301 cgggaaaatc caaggcttat ttatgccagg ctgagtggat ttggccagtc aggaagcttc
361 tgccggttag ctggccacga tatcaactat ttggctttgt caggtggaag gaacagcata
421 tttaagttct tttctgtgga aaactcagaa atcgagtctg tgggaagcac ctcgaggaca
481 gaacatgttg gatggtggag cacctttcta tacgacttac aggacagcag atggggaatt
541 catggctgtt ggagcaatag aaccccagtt ctacgagctg ctgatcaaag gacttggact
601 aaagtctgat gaacttccca atcagatgag catggatgat tggccagaaa tgaagaagaa
661 gtttgcagat gtatttgcaa agaagacgaa ggcagagtgg tgtcaaatct ttgacggcac
721 agatgcctgt gtgactccgg ttctgacttt tgaggaggtt gttcatcatg atcacaacaa
781 ggaacggggc tcgtttatca ccagtgagga gcaggacgtg agcccccgcc ctgcacctct
841 gctgttaaac accccagcca tcccttcttt caaaagggat cctttcatag gagaacacac
901 tgaggagata cttgaagaat ttggattcag ccgcgaagag atttatcagc ttaactcaga
961 taaaatcatt gaaagtaata aggtaaaagc tagtctctaa cttccaggcc cacggctcaa
1021 gtgaatttga atactgcatt tacagtgtag agtaacacat aacattgtat gcatggaaac
1081 atggaggaac agtattacag tgtcctacca ctctaatcaa gaaaagaatt acagactctg
1141 attctacagt gatgattgaa ttctaaaaat ggttatcatt agggcttttg atttataaaa
1201 ctttgggtac ttatactaaa ttatggtagt tattctgcct tccagtttgc ttgatatatt
1261 tgttgatatt aagattcttg acttatattt tgaatgggtt ctagtgaaaa aggaatgata
1321 tattcttgaa gacatcgata tacatttatt tacactcttg attctacaat gtagaaaatg
1381 aggaaatgcc acaaattgta tggtgataaa agtcacgtga aacagagtga ttggttgcat
1441 ccaggccttt tgtcttggtg ttcatgatct ccctctaagc acattccaaa ctttagcaac
1501 agttatcaca ctttgtaatt tgcaaagaaa agtttcacct gtattgaatc agaatgcctt
1561 caactgaaaa aaacatatcc aaaataatga ggaaatgtgt tggctcacta cgtagagtcc
1621 agagggacag tcagttttag ggttgcctgt atccagtaac tcggggcctg tttccccgtg
1681 ggtctctggg ctgtcagctt tcctttctcc atgtgtttga tttctcctca ggctggtagc
1741 aagttctgga tcttataccc aacacacagc aacatccaga aataaagatc tcaggacccc
1801 ccagcaagtc gttttgtgtc tccttggact gagttaagtt acaagccttt cttatacctg
1861 tctttgacaa agaagacggg attgtcttta cataaaacca gcctgctcct ggagcttccc
1921 tggactcaac ttcctaaagg catgtgagga aggggtagat tccacaatct aatccgggtg
1981 ccatcagagt agagggagta gagaatggat gttgggtagg ccatcaataa ggtccattct
2041 gcgcagtatc tcaactgccg ttcaacaatc gcaagaggaa ggtggagcag gtttcttcat
2101 cttacagttg agaaaacaga gactcagaag ggcttcttag ttcatgtttc ccttagcgcc
2161 tcagtgattt tttcatggtg gcttaggcca aaagaaatat ctaaccattc aatttataaa
2221 taattaggtc cccaacgaat taaatattat gtcctaccaa cttattagct gcttgaaaaa
2281 tataatacac ataaataaaa aaatatattt ttcatttcta tttcattgtt aatcacaact
2341 acttactaag gagatgtatg cacctattgg acactgtgca acttctcacc tggaatgaga
2401 ttggacactg ctgccctcat tttctgctcc atgttggtgt ccatatagta cttgattttt
2461 tatcagatgg cctggaaaac ccagtctcac aaaaatatga aattatcaga aggattatag
2521 tgcaatctta tgttgaaaga atgaactacc tcactagtag ttcacgtgat gtctgacaga
2581 tgttgagttt cattgtgttt gtgtgttcaa atttttaaat attctgagat actcttgtga
2641 ggtcactcta atgccctggg tgccttggca cagttttaga aataccagtt gaaaatattt
2701 gctcaggaat atgcaactag gaaggggcag aatcagaatt taagctttca tattctagcc
2761 ttcagtcttg ttcttcaacc attttcagga actttcccat aaggttatgt tttccagccc
2821 aggcatggag gatcacttga ggccaagagt tcgagaccag cctggggaac ttggctggac
2881 ctccgtttct acgaaataaa aataaaaaaa ttatccagga aaaaaaaaaa aaaaaaaaaa
2941 aaaaaa
//