LOCUS BC009087 1948 bp mRNA linear ROD 02-DEC-2006 DEFINITION Mus musculus sphingomyelin phosphodiesterase, acid-like 3B, mRNA (cDNA clone MGC:6556 IMAGE:2810972), complete cds. ACCESSION BC009087 VERSION BC009087.1 KEYWORDS MGC. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1948) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1948) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (30-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lothar Hennighausen Ph.D., Robin Humphreys cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 5 Row: j Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 19527103. FEATURES Location/Qualifiers source 1..1948 /organism="Mus musculus" /mol_type="mRNA" /strain="mix FVB/N, C57BL/6J" /db_xref="taxon:10090" /clone="MGC:6556 IMAGE:2810972" /tissue_type="Mammary tumor. WAP-TGF alpha model. 7 months old, gross tissue." /clone_lib="NCI_CGAP_Mam5" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1948 /gene="Smpdl3b" /db_xref="GeneID:100340" /db_xref="MGI:MGI:1916022" CDS 127..1497 /gene="Smpdl3b" /codon_start=1 /product="sphingomyelin phosphodiesterase, acid-like 3B" /protein_id="AAH09087.1" /db_xref="GeneID:100340" /db_xref="MGI:MGI:1916022" /translation="MTLLGWLIFLAPWGVAGAQLGRFWHISDLHLDPNYTVSKDPLQV CPSAGSQPVLNAGPWGDYLCDSPWALINSSLYAMKEIEPKPDFILWTGDDTPHVPNES LGEAAVLAIVERLTNLIKEVFPDTKVYAALGNHDFHPKNQFPAQSNRIYNQVAELWRP WLSNESYALFKRGAFYSEKLPGPSRAGRVVVLNTNLYYSNNEQTAGMADPGEQFRWLG DVLSNASRDGEMVYVIGHVPPGFFEKTQNKAWFRESFNEEYLKVIQKHHRVIAGQFFG HHHTDSFRMFYDNTGAPINVMFLTPGVTPWKTTLPGVVDGANNPGIRIFEYDRATLNL KDLVTYFLNLRQANVQETPRWEQEYRLTEAYQVPDASVSSMHTALTRIASEPHILQRY YVYNSVSYNHLTCEDSCRIEHVCAIQHVAFNTYATCLHGLGAKLVPGFLLILTLLPSL HVLEVL" BASE COUNT 477 a 521 c 515 g 435 t ORIGIN 1 cttggaacac tggaagcagc caaacgagta gttctgccca gacacgtggc tggccacaag 61 gtgggaaccc acggcgcaga cggacttgga ggagcttcgg ccgcccgccg tggggggatc 121 cagaggatga cgctgctcgg gtggctgata ttcctggccc cctggggagt cgcaggggct 181 caactaggga ggttctggca catctccgac ctgcatctgg accccaacta caccgtatcc 241 aaagaccccc tccaggtgtg cccgtcggcc ggctcccagc ctgtgctaaa tgctggcccc 301 tggggggact acctctgcga ttctccttgg gcccttatca actcgtcctt gtatgccatg 361 aaggagattg aaccaaagcc tgacttcatt ctctggacag gggacgacac accgcacgtc 421 cccaatgaga gtctaggaga ggcagctgtg ctggcaattg tggaacgctt gaccaacctc 481 atcaaggaag tctttccaga cactaaagtc tatgctgctc tgggaaatca tgacttccac 541 cctaagaacc agttcccagc acagagcaac cgcatctata accaggtggc agagctgtgg 601 agaccctggc ttagtaacga atcctacgct ctcttcaaaa gaggtgcctt ctattctgag 661 aagttgccgg gtcccagcag ggcggggcga gttgtggtcc tcaacaccaa tctgtactac 721 agcaacaacg agcagacagc tggcatggct gaccccggcg agcagttccg gtggctggga 781 gatgtcctga gcaatgcatc tcgggatggg gagatggtgt atgttattgg ccacgtgccc 841 ccggggttct ttgagaagac acagaacaag gcctggttcc gagagagctt caatgaggag 901 tatctgaagg tgatccagaa gcaccatcgg gtcatagcgg ggcagttctt tggacaccac 961 cataccgaca gcttccgaat gttctatgac aacacaggtg cccccataaa cgtcatgttt 1021 ctcacacccg gggtcacacc gtggaagacc acattacctg gagtggtcga tggggccaac 1081 aatccaggga tacgcatttt cgagtatgat cgagccacac tcaacttgaa ggacttggtg 1141 acttacttct tgaacctgag gcaggcgaat gtacaagaga ccccacggtg ggagcaggag 1201 taccgcctga cggaggccta ccaggtgccg gatgccagcg tcagctccat gcacacggcg 1261 ctgacccgca ttgccagtga gcctcacatc ctgcaacgtt attacgtcta taactcggtc 1321 agctacaacc atttgacctg tgaggacagc tgccgcatcg agcacgtttg tgctatacaa 1381 cacgtggctt tcaacactta tgctacctgc ttgcatggtc ttggtgccaa gctggtgcct 1441 ggtttcctgc tcatactgac tctgctgcca agcctgcacg tactggaggt gttatgactg 1501 taggcactgc cagcccaccc actgacttgg ttcatctttc tcctggtaaa attgggcaac 1561 gttacccaat ggagagagat gaacttttgc catcagtctc cccccgcgga gagtaaagtg 1621 ggatgggaca cctggattca ccagagaggg cgctaagaag cacaatttct tccaagtttc 1681 atgttttatc cacaaaactt gtttgcggta catgtcttgg tgcattattc gctttaatac 1741 aaacatatca aaccaccatg aacttgatca ccacagtgaa gtgagccgac gggaagatgg 1801 gccttggaga ttctgtgctt tcgatgtagt ccctgctcaa ggtctgaact gggaacgtac 1861 gtggtgtgca aaacccctta gtacttttaa ataaaagact tttttgattt ggttttgcaa 1921 cagtgaaaaa aaaaaaaaaa aaaaaaaa //