LOCUS BC001767 870 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens LSM1 homolog, U6 small nuclear RNA associated (S.
cerevisiae), mRNA (cDNA clone MGC:1352 IMAGE:3353833), complete
cds.
ACCESSION BC001767
VERSION BC001767.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 870)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 870)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: h Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7657312.
FEATURES Location/Qualifiers
source 1..870
/db_xref="H-InvDB:HIT000030636"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1352 IMAGE:3353833"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..870
/gene="LSM1"
/gene_synonym="CASM"
/gene_synonym="YJL124C"
/db_xref="GeneID:27257"
/db_xref="HGNC:HGNC:20472"
/db_xref="MIM:607281"
CDS 98..499
/gene="LSM1"
/gene_synonym="CASM"
/gene_synonym="YJL124C"
/codon_start=1
/product="LSM1 homolog, U6 small nuclear RNA associated
(S. cerevisiae)"
/protein_id="AAH01767.1"
/db_xref="GeneID:27257"
/db_xref="HGNC:HGNC:20472"
/db_xref="MIM:607281"
/translation="MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLH
QTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVE
QQTKLEAEKLKVQALKDRGLSIPRADTLDEY"
BASE COUNT 287 a 164 c 195 g 224 t
ORIGIN
1 gcttggtccc accgaggcgg cgactgcggt aggagggaag aggttttgga cgcgctggcc
61 tcccgccgct gtgcatgcag cattatttca gttcaaaatg aactatatgc ctggcaccgc
121 cagcctcatc gaggacattg acaaaaagca cttggttctg cttcgagatg gaaggacact
181 tataggcttt ttaagaagca ttgatcaatt tgcaaactta gtgctacatc agactgtgga
241 gcgtattcat gtgggcaaaa aatacggtga tattcctcga gggatttttg tggtcagagg
301 agaaaatgtg gtcctactag gagaaataga cttggaaaag gagagtgaca cacccctcca
361 gcaagtatcc attgaagaaa ttctagaaga acaaagggtg gaacagcaga ccaagctgga
421 agcagagaag ttgaaagtgc aggccctgaa ggaccgaggt ctttccattc ctcgagcaga
481 tactcttgat gagtactaat cttttgccca gaggctgttg gctcttgaag agtaggggct
541 gtcactgagt gaaagtgaca tcctggccac ctcacgcatt tgatcacaga ctgtagagtt
601 ttgaaaagtc acttttattt ttaattattt tacatatgca acatgaagaa atcgtgtagg
661 tgggtttttt tttaataaca aaatcactgt ttaaagaaac agtggcatag actccttcac
721 acatcactgt ggcaccagca actacttctt tatattgttc ttcatatccc aaattagagt
781 ttacagggac agtcttcatt tacttgtaaa taaaatatga atctcaaaaa aaaaaaaaaa
841 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//