LOCUS AY863024 6607 bp RNA linear VRL 09-MAR-2007 DEFINITION Alternanthera mosaic virus, complete genome. ACCESSION AY863024 VERSION AY863024.1 KEYWORDS . SOURCE Potexvirus alternantherae (AltMV) ORGANISM Potexvirus alternantherae Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus. REFERENCE 1 (bases 1 to 6607) AUTHORS Hammond,J., Reinsel,M.D. and Maroon-Lango,C.J. TITLE Identification and full sequence of an isolate of Alternanthera mosaic potexvirus infecting Phlox stolonifera JOURNAL Arch. Virol. 151 (3), 477-493 (2006) PUBMED 16211329 REFERENCE 2 (bases 1 to 6607) AUTHORS Hammond,J., Reinsel,M.D. and Maroon-Lango,C.J. TITLE Direct Submission JOURNAL Submitted (21-DEC-2004) Floral and Nursery Plants Research Unit, National Arboretum, USDA-ARS, 10300 Baltimore Avenue, Beltsville, MD 20705, USA FEATURES Location/Qualifiers source 1..6607 /organism="Potexvirus alternantherae" /mol_type="genomic RNA" /host="Phlox stolonifera cv. Sherwood Purple" /db_xref="taxon:85454" /geo_loc_name="USA: Pennsylvania" 5'UTR 1..94 gene 95..4720 /gene="ORF1" CDS 95..4720 /gene="ORF1" /codon_start=1 /product="replicase" /protein_id="AAX62019.1" /translation="MAHFRSVLDQMNDPSLRAVIQEEAYREIKKTIAETKQYNPYAQD PAAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSKL QYFHRGPQHGDLFLNAWIEPKDVTRYDLEDLFKPSITPEIQTRVAFIGDTLHFLPLGA IREIFTNSQKLHTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYC HEYSQLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVE TKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQ SYSAKELALIVNYYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGKIFGKEE FEQLMEALEWVDVSLSYRVETYSQANPNNQPKVMFGYEWLSTETGTPGTEEDVAPETP QEDEDPHEKYIQALQILTKALDQESAPPPTEPAQSSSINDPQQEEHLRSSHDLHTDES PSCSGSLSSYACHCPCGTELKIFSAEFPPIPPLSHGDRLKNREAFFFSRDGTPYSYTG GSHVSRGWPAFLDQILATAELVRPLPHFNQCLIQKYQRGASIPFHSDNEPCYDVDHQV LTINLTGEAEFKTSCKAGSGSCTLVENQFHLSPPGFQKTHKHSVVSLSAGRVSLTFRS TVKQGVTSEEGDYVEPDNLPWKAWLEKLRNLGFRGTQLQYDPNGALISPIESIKSLPK CSPEKVNPSLLKMLNSQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRF DSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLP TFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDSKQSV HHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGN HPVPGLHLLVPSLYKKQAFSEMGHKASTYAGCQGLTAPRVQILLSEETSMCSREVIYT ALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDP PKTHIPVDSAMPIYEDLLDQMPEKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDE TLLWATIEARLVISNPKANWQEFMEKKPIGDVLFGFYREAMGLPTEPIAFEPQLWESC IHEIQRTYLAKPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTI ASFHQATVMLFGTMARYMRRMREIFQPKNIAINCEMTPEDLTDWAVGPAGQWKFAGPS LANDFTAFDQSQDGAMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLAIMRLTG EGPTFDANTECNIAFTHAKFQIPKGTAQLYAGDDSAIDGNPTVRESFRLVEQKLKLRS KPAIAMQEKGDWAEFCGYRITPKGFIKDPKKLHASLVLEKKKGNLRNVLRSYELDLAL AYQHRDELHELLSEEELRLHYDTVRTLVKSGGGEVLKTFLPKDESLY" variation 178 /gene="ORF1" /replace="c" variation 819 /gene="ORF1" /note="results in histidine to arginine substitution" /replace="g" variation 1323 /gene="ORF1" /note="results in arginine to lysine substitution" /replace="a" variation 1807 /gene="ORF1" /replace="t" variation 2641 /gene="ORF1" /replace="c" variation 3152 /gene="ORF1" /note="results in threonine to alanine substitution" /replace="g" variation 3629 /gene="ORF1" /note="results in leucine to phenylalanine substitution" /replace="t" variation 4522 /gene="ORF1" /replace="a" variation 4645 /gene="ORF1" /replace="a" variation 4669 /gene="ORF1" /replace="g" variation 4678 /gene="ORF1" /replace="a" variation 4695 /gene="ORF1" /note="results in leucine to proline substitution" /replace="c" gene 4704..5402 /gene="TGB1" CDS 4704..5402 /gene="TGB1" /codon_start=1 /product="triple gene block 1 protein 26k" /protein_id="AAX62020.1" /translation="MNHFINLLIEEGYVRTNEILSDTLVVHAVAGAGKSTLIRKFIHQ HPQARAYTHGVPDPPNLEGRFIQAFKNPDPNHFNILDEYCAEPLSGSWNVLIADPLQH RSQALRPHYIKRESHRLGAATCELLTRVGLPVLSNKTEDQVDSQGIFEGPLFGTVIAL DSTVRALLIKHGISPLCPAEVLGSEFEETTVVSEVPLSQVRFKHALYIALTRHRKSLH VRAPPLPDTPRRSL" variation 4819 /gene="TGB1" /replace="a" variation 5099 /gene="TGB1" /replace="c" gene 5356..5688 /gene="TGB2" CDS 5356..5688 /gene="TGB2" /codon_start=1 /product="triple gene block 2 protein 12k" /protein_id="AAX62021.1" /translation="MSGLPHSLTPPADHSKPVLAAVVGVSLALVINSFLVYRLPSPGD NIHQLPFGGSYRDGTKSIHYNSPRAQSQISGASPFLIILILSALIYALSCRGGHHRAR LHRCPCCS" gene 5624..5815 /gene="TGB3" CDS 5624..5815 /gene="TGB3" /codon_start=1 /product="triple gene block 3 protein 7k" /protein_id="AAX62022.1" /translation="MPYLVEAAITVLACIGVLAALRPGSHPCTILLTGHSATISGDCG PVAPETIRALGDYLTGLRF" gene 5858..6481 /gene="CP" CDS 5858..6481 /gene="CP" /codon_start=1 /product="coat protein" /protein_id="AAX62023.1" /translation="MSTPFPQITQEQMNAFTPHATSNLLPSSEQLTTIASLLVAAKVP AASTTTIALELVNFCYDNGSSTYTVVVGPSSLAEVSLSQVANIVKASGTSLRKFCRFF APIIWNLRTDKTPPANWEANGFKPTEKFAAFDFFDGVENPAAMQPPGGLVRTPSQAER IANATNKQVNLFQAAAQDNNFASNSAFITKGQLSSNSPTIQYLPPPE" variation 6112 /gene="CP" /replace="c" 3'UTR 6482..6607 BASE COUNT 1778 a 1894 c 1483 g 1452 t ORIGIN 1 gaaaagtaaa gcaaagcaaa acaaagcaaa gaaactgaaa gtccatattt gcccttcgag 61 gagatcgatt acccatcccg gctagatcaa cagtatggcc cactttcgtt ccgttcttga 121 ccaaatgaat gatcccagcc ttcgggcggt cattcaagaa gaagcttacc gcgaaattaa 181 aaaaactatc gcggaaacta aacagtacaa tccttacgcc caggatccag cggcggctga 241 ctcattagag aaattaggaa tagaatctaa ccccttctca gtccgcgccc atacacacgc 301 ggccgcgaag tctatagaat tagacatgta caaaatcacg ggttactccc tcccaaagga 361 gaatccaatc acttttcttt tcatgaagag gtccaaactt caatacttcc acagaggccc 421 acagcatgga gacttgttcc tcaacgcttg gattgagcca aaggacgtta ccaggtacga 481 cttagaagac ctcttcaaac cttccatcac cccagaaatc caaactagag tggcattcat 541 tggagacaca ctacacttcc ttcccctagg ggctatcaga gagatattta caaactccca 601 aaaacttcac actctctatg caacaatggt actgcccccc gaagccatgc acagaatgca 661 ctcaattcac cccagcatct acgagctaga attccatgaa agaaatttca tatacaagcc 721 gggaggacat gccggggcgt cttattgcca cgaatactca caacttcagt ggctcaaggt 781 cgggaaattt gagtggtgcg acaaaaaata tcagaagcac tatgtgacat cacagattct 841 ggaaaccaag ggtgcaaatc accttttcgt gttccagcgc ggcaatttcg ccacccctac 901 ctaccgaact ttcggggtag agacaaaatt tgtcacactc ccacccatat tcctcccaaa 961 gaaatacaac gcgcggtatc cgataaagaa aactgtggca cagcagctat ttctctacat 1021 caagtctgtg aaaacagtca cggagagaga catctgggcc aaagtgagac agatcataaa 1081 gaccgctgag ctccaaagct actcggcaaa agaactcgca ctcattgtca actactactt 1141 gctcatttcc aagctggact ctgtcacatg tttcgacaat gtgcttacag ggggtgcgct 1201 caagaaactc ttcaaaccca ttgtggcttg gtggtccacc ttcaaaggca agattttcgg 1261 gaaggaggag ttcgaacaac ttatggaggc gctcgagtgg gttgacgtgt cactgtccta 1321 cagagtggag acatacagcc aagccaaccc aaacaatcaa cccaaggtga tgttcgggta 1381 tgagtggctc agcacagaaa cgggaacccc agggacagag gaggacgtcg ctcccgaaac 1441 cccacaagag gacgaggacc cacatgaaaa gtatatccag gccctccaaa tactgacgaa 1501 ggccctcgat caggagagcg ccccaccacc aacagaacca gcccaaagct ccagcatcaa 1561 tgatccacaa caggaggagc acctccgctc atcccacgac ctccacactg atgaatctcc 1621 aagctgctca ggaagcttga gttcttatgc ttgccactgc ccatgcggca ctgagctcaa 1681 aattttttca gccgagtttc cacccattcc cccactatca cacggcgatc ggctaaaaaa 1741 tagggaagca ttcttcttct caagagatgg cactccctac agctacactg ggggttccca 1801 cgtgtccaga ggatggccgg ctttccttga ccagatcctg gccactgctg agttggtgag 1861 gcctctcccc cacttcaacc aatgcctcat ccaaaaatac caaaggggcg cctccatccc 1921 cttccacagc gacaatgagc catgctacga tgtggaccac caagtgctca caatcaacct 1981 caccggcgaa gcggaattca aaactagctg caaagccggt tcagggagtt gcacgctggt 2041 agagaaccag ttccacctat cccccccagg cttccaaaag acgcataagc acagtgtagt 2101 ctcacttagt gcggggcgag tctcccttac attccgctcc actgtcaagc agggtgttac 2161 ctctgaagag ggcgattatg ttgagcccga caatctgcca tggaaggcct ggctcgagaa 2221 attgagaaac ctgggattca ggggcacaca gttgcaatat gatccaaatg gagccttgat 2281 ctcaccaatc gaaagcatca agtcacttcc gaagtgctcc ccggagaagg tcaacccctc 2341 cctcctcaag atgctgaata gtcaggctcg cgcaccaact ccattttcgc cgagccccat 2401 cagagcaaaa gcctattcct cagacgttaa gaactcccga attggcgcat tactccgaca 2461 gcagggcaag gattggggcc accgtttcga ttcactcgtg gagaatgggc aaagacagct 2521 agccatcagt gtgatccatg gggccggcgg ctctgggaaa tcaagggcgt tgcagatgta 2581 cctaaaagac aacccagatg ctgatgtcac gatagtgctg ccaactaacg agcttaggct 2641 agactggttg aagaaattac ccaccttccc agctgaccag atcaaaacct tcgaaaaggc 2701 cttgctggcc cccacgaagc ccacagtcat cttcgatgat tacggcaaac tgccggccgg 2761 gtatattgag gccttctcgt tctacatgtc ctcggctgaa cttctggtgc tcaccggtga 2821 ttccaagcaa agtgtgcacc acgagtctaa tgagaatgcg atgagcagcc tcattgaacc 2881 cttcaccctg gaagctgaca agtactcacg ctactacatc aatgccacac acagaaacaa 2941 gcgtgatctg gctaacaagc taggggtcta ctcggaggtc acgggaataa catccatcac 3001 ccaaggcaac caccctgtgc cgggacttca cctgcttgtc ccctcactct acaagaagca 3061 agctttcagc gagatgggcc acaaggcctc cacctatgcg ggctgtcagg gtctcacagc 3121 cccacgcgtg caaattctgc tctcagaaga gactagtatg tgttcccgcg aagttattta 3181 caccgccctc tcccgagccg ttcattccat tcactttgtc aactgcggcc caaacaatca 3241 ggctttttgg gccaagctgg agagcacacc ttatctgaaa gctttcctct ccacgctccg 3301 agaagacgcg gcacccgtcg tgaaaccgaa ggaggaagca ccagccccag ttgatccccc 3361 aaagacccac atcccagttg attcagccat gccaatctat gaggacctac tggatcagat 3421 gccggaaaag catgagaggg agatcttttc agaaaagcat gggcacagca attgcgtgca 3481 aacggaggat acctttgtgc aaatgttcag tcaccagcag gctaaggacg aaacccttct 3541 ctgggccacc atcgaggcga gactggtcat ttccaacccc aaggccaatt ggcaagaatt 3601 catggagaaa aaacccattg gagatgtgct cttcggtttc tacagagaag cgatggggtt 3661 gcccactgaa cctattgcct ttgaaccaca gctttgggag tcttgcatcc atgagatcca 3721 gcgtacctac ttggcaaagc ccatcaacat gctgaagaat ggacaggccc ggcaatcccc 3781 cgattatgat ccgaatatga tatctctctt tctgaagtcc cagtgggtga agaaaatgga 3841 gaagttgggt gccttaaaga ttaagcccgg acaaactatt gcctccttcc accaggccac 3901 tgtcatgctg tttggcacga tggccaggta catgaggaga atgcgggaga tcttccagcc 3961 taagaacatt gccatcaact gcgagatgac cccagaagat ctcacagact gggccgtggg 4021 tcctgccggc cagtggaaat tcgccggccc ctctctagcc aatgacttca cagcattcga 4081 tcagtcacaa gatggggcga tgcttcagtt tgaggtcctt aaagccaagc accacagcat 4141 tccagaggat gtcttggatg cctatctgca tatcaaaaca aactcgaaga tcttcttagg 4201 tacattggcc attatgagac tcacgggcga gggccccact ttcgatgcaa acactgagtg 4261 taacatcgct ttcacccatg caaaatttca gattccgaag ggtacagccc agctttacgc 4321 gggagatgac tcggcaattg atggcaaccc cacagtgaga gagagtttca gattggttga 4381 gcagaaattg aagctgaggt caaaaccggc gatcgcgatg caggaaaaag gagactgggc 4441 ggagttctgt ggatacagga ttacgcccaa aggtttcatc aaggatccaa agaaacttca 4501 cgcgagtctg gtgcttgaaa agaagaaagg caatttgagg aatgtgctga ggtcttatga 4561 gcttgacctg gccctggcat atcagcaccg ggatgaactt cacgaattac tctctgagga 4621 ggagctgcgt cttcactacg acacggttcg tacgctagtt aagtcaggtg gaggagaggt 4681 tttgaaaact tttcttccca aagatgaatc actttattaa cctcctcatc gaagagggtt 4741 acgtccggac gaacgaaatc ctctcagaca ctctagtcgt ccatgctgta gccggcgctg 4801 gcaagtccac cctcatccgc aaattcatcc accagcatcc acaggcccga gcgtacaccc 4861 acggagtccc tgacccccca aatcttgaag gccgattcat tcaggctttc aaaaacccag 4921 acccaaacca cttcaacatc cttgacgagt attgtgcaga gcctctgagc ggtagttgga 4981 acgtgctcat tgccgacccc ttacaacata gatctcaagc tcttcgaccc cactacatca 5041 aaagagagtc ccacagacta ggagcagcca cgtgtgaact cctcaccaga gtggggcttc 5101 cagttttgtc caacaaaact gaggatcaag ttgattccca gggcattttc gaagggcccc 5161 ttttcggcac cgtgattgct ctggactcca ctgtcagagc cctcctcata aagcacggga 5221 tttcaccact ctgcccggct gaggtcctcg ggtctgagtt tgaggaaacg acagtcgtct 5281 ctgaggttcc gcttagccag gtcaggttca agcacgctct gtacatcgct ctcacccgcc 5341 acagaaagtc tctccatgtc cgggctcccc cactccctga caccccccgc cgatcactct 5401 aagccagtgc ttgcagcagt agtaggagtt agtttagctt tagtaataaa ctctttcttg 5461 gtctatagac ttccctcgcc cggggacaat attcatcaac tgcccttcgg aggttcctac 5521 cgggacggaa ctaagagcat ccactacaat tcgcctaggg cccagagtca gatctcaggt 5581 gcatcaccgt tcctaatcat cctgatactc tcagccctca tctatgccct atcttgtaga 5641 ggcggccatc accgtgctcg cttgcatagg tgtccttgct gctcttaggc cagggtccca 5701 tccctgcaca attctgctaa ctgggcactc tgcgaccatt agcggagatt gtggacccgt 5761 cgcaccagag accatcaggg ctcttggaga ctatttaacc gggcttaggt tttagcatta 5821 gtttgattat tctattctta tcctagttaa aatcatcatg tctacaccat ttcctcaaat 5881 cactcaggaa cagatgaacg ctttcactcc acacgccaca tccaatctcc ttccatcatc 5941 ggagcagttg actaccattg ccagtctctt ggttgctgcc aaggtgcctg ccgcctcaac 6001 cacaaccatt gccctggaac ttgtcaattt ctgttatgac aatggctcca gtacctacac 6061 agtggtggtg ggtccttctt cacttgcaga ggtctcactc tcccaggttg ctaacatcgt 6121 caaagcctca ggcacctctc tccgcaaatt ctgcagattc tttgccccaa tcatctggaa 6181 cctcagaaca gacaagacgc ccccagccaa ctgggaagcc aatgggttca aaccgacaga 6241 gaagtttgca gccttcgatt tcttcgacgg agtggagaat ccggcggcca tgcagccacc 6301 aggagggttg gttaggactc ccagccaagc agaaaggatc gccaacgcca ctaacaagca 6361 ggtgaacctc tttcaggccg cggcacagga caacaacttc gccagcaact ctgcattcat 6421 caccaagggc caattgtcct ccaactcacc aactattcaa tacctcccac cacctgagtg 6481 atttctccac ccagtccaag cccgttgttt tcgcaatttt gttggggcta tcgagttttc 6541 aaaattgctt tcgcttctgt agacctaaat tacagcctag tgtgcggttt aatacctatt 6601 tacgcac //