LOCUS AY507153 7201 bp DNA linear BCT 03-APR-2009 DEFINITION Pseudomonas aeruginosa strain 4122 class I integron, partial sequence. ACCESSION AY507153 VERSION AY507153.1 KEYWORDS . SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 7201) AUTHORS Corvec,S., Poirel,L., Espaze,E., Giraudeau,C., Drugeon,H. and Nordmann,P. TITLE Long-term evolution of a nosocomial outbreak of Pseudomonas aeruginosa producing VIM-2 metallo-enzyme JOURNAL J. Hosp. Infect. 68 (1), 73-82 (2008) PUBMED 18079018 REFERENCE 2 (bases 1 to 7201) AUTHORS Poirel,L., Drugeon,H. and Nordmann,P. TITLE Clonal diversity of blaVIM-2-producing Pseudomonas aeruginosa isolates in France JOURNAL Unpublished REFERENCE 3 (bases 1 to 7201) AUTHORS Poirel,L., Drugeon,H. and Nordmann,P. TITLE Direct Submission JOURNAL Submitted (17-DEC-2003) Service de Bacteriologie-Virologie, Hopital de Bicetre, 78, rue du General Leclerc, Le Kremlin Bicetre 94275, France FEATURES Location/Qualifiers source 1..7201 /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="4122" /db_xref="taxon:287" mobile_element 1..>7201 /mobile_element_type="integron:class I" repeat_region 31..34 /note="target site duplication" repeat_region 35..51 /note="inverted repeat left" /rpt_type=inverted gene 105..1535 /gene="tnpA" CDS 105..1535 /gene="tnpA" /note="ISpa7 TnpA" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="AAS79141.1" /translation="MKRFIQGEHRGQSTLLPESLDDYVADTNPVRVVDVFVDELDLGL LGFEGVVPAETGRPAYHPADLLKIYIYGYLNRIQSSRRLERESQRNVELMWLTGRLMP DFKTIANFRKDNGKAIRGVCRQFVVLCQQLGLFSEALVAIDGSKFKAVNNRDRNFTSA KLQRRMEEIESSINRYLTALDTADRQEPAVAQVKAERLHDKIATLKTKLRELKEVEVQ LNETPDKQISLTDPDARSMKTRGSGIVGYNVQAAVDAKHHLIVTHEVTNDGVDRDQLS SMAKQAREAMGVEELSAVADRGYFKGEEILACHEAGITVFVPKTLTSGATAAGRFGKG DFIYDAAKNEYRCPAGQSLIWRFSSVEKGLKLHRYWSSHCQGCALKEHCTPSSERRVS RWEHEAVLEAMQSRLDQAPEMMRIRRQTVEHPFGTLKSWMGATHFLTKTLDRVSTEMS LHVLAYNLKRVLNVLGSGALMAAMKA" repeat_region 1687..1703 /note="inverted repeat right" /rpt_type=inverted repeat_region 1704..1707 /note="target site duplication" gene complement(1810..2823) /gene="intI1" CDS complement(1810..2823) /gene="intI1" /note="IntI1" /codon_start=1 /transl_table=11 /product="integrase" /protein_id="AAS79142.1" /translation="MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAF IRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQ EIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDF DHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALER KYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATP HTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLT SER" gene 2708..3790 /gene="blaVIM-2" regulatory 2708..2713 /regulatory_class="minus_35_signal" /gene="blaVIM-2" /note="promoter region" regulatory 2731..2736 /regulatory_class="minus_10_signal" /gene="blaVIM-2" /note="promoter region" misc_recomb 2959..2965 /gene="blaVIM-2" /note="core site" CDS 2990..3790 /gene="blaVIM-2" /note="VIM-2" /codon_start=1 /transl_table=11 /product="beta-lactamase" /protein_id="AAS79143.1" /translation="MFKLLSKLLVYLTASIMAIASPLAFSVDSSGEYPTVSEIPVGEV RLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQ IGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSS SGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAE WPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTNRSVVE" misc_recomb 3803..3809 /note="inverse core site" misc_recomb 3868..3874 /note="core site" gene 3890..4717 /gene="bla OXA-2" CDS 3890..4717 /gene="bla OXA-2" /note="OXA-2" /codon_start=1 /transl_table=11 /product="oxacillinase" /protein_id="AAS79144.1" /translation="MAIRIFAILFSIFSLATFAHAQEGTLERSDWRKFFSEFQAKGTI VVADERQADRAMLVFDPVRSKKRYSPASTFKIPHTLFALDAGAVRDEFQIFRWDGVNR GFAGHNQDQDLRSAMRNSTVWVYELFAKEIGDDKARRYLKKIDYGNADPSTSNGDYWI EGSLAISAQEQIAFLRKLYRNELPFRVEHQRLVKDLMIVEAGRNWILRAKTGWEGRMG WWVGWVEWPTGSVFFALNIDTPNRMDDLFKREAIVRAILRSIEALPPNPAVNSDAAR" misc_recomb 4681..4687 /gene="bla OXA-2" /note="inverse core site" misc_recomb 4744..4750 /note="core site" gene 4805..5323 /gene="aacA4" CDS 4805..5323 /gene="aacA4" /note="AAC(6')-Ib'" /codon_start=1 /transl_table=11 /product="aminoglycoside-6'-N-acetyltransferase" /protein_id="AAS79145.1" /translation="MTEHDLAMLYEWLNRSHIVEWWGGEEARPTLADVQEQYLPSVLA QESVTPYIAMLNGEPIGYAQSYVALGSGDGWWEEETDPGVRGIDQLLANASQLGKGLG TKLVRALVELLFNDPEVTKIQTDPSPSNLRAIRCYEKAGFERQGTVTTPDGPAVYMVQ TRQAFERTRSDA" misc_recomb 5318..5324 /note="inverse core site" misc_recomb 5383..5389 /note="core site" gene 5393..5926 /gene="aadB" CDS 5393..5926 /gene="aadB" /note="AadB" /codon_start=1 /transl_table=11 /product="aminoglycoside modifying enzyme" /protein_id="AAS79146.1" /translation="MDTTQVTLIHKILAAADERNLPLWIGGGWAIDARLGRVTRKHDD IDLTFPGERRGELEAIVEMLGGRVMEELDYGFLAEIGDELLDCEPAWWADEAYEIAEA PQGSCPEAAEGVIAGRPVRCNSWEAIIWDYFYYADEVPPVDWPTKHIESYRLACTSLG AEKVEVLRAAFRSRYAA" misc_recomb 5921..5927 /note="inverse core site" misc_recomb 5974..5980 /note="core site" gene 6077..6409 /gene="qacG" CDS 6077..6409 /gene="qacG" /note="QACE3" /codon_start=1 /transl_table=11 /product="quaternary ammonium resistance protein" /protein_id="AAS79147.1" /translation="MKIWLFLATSIISEVIATSALKSSEGFTRLVPSFIVVAGYAAAF YFLSLTLKSIPVGIAYAVWSGLGIVLVTAIAWVLHGQKLDMWGFVGVGFIISGVAVLN LLSKASVH" misc_recomb 6419..6425 /note="inverse core site" gene complement(6614..>7201) /gene="tniC" CDS complement(6614..>7201) /gene="tniC" /note="TniC" /codon_start=1 /transl_table=11 /product="invertase" /protein_id="AAS79148.1" /translation="GSQSTNLQRFSLIAAGVSLAHLYEDLASGRRDDRPGLAACLKAL REGDTLIVWKLDRLGRDLRHLINTVHDLTARSVGLKVLTGHGAAVDTTTAAGKLVFGI FAALAEFERELISERTVAGLISARARGRKGGRPFKMTAAKLRLAMASMGQPETKVGDL CEELGITRQTLYRHVSPKGELRPDGVKLLSLGSAA" BASE COUNT 1591 a 1973 c 2110 g 1527 t ORIGIN 1 ggatccatca ggcaacgacg ggctgctgcc ggcccagacc gtgtaaaaac gttggcatcg 61 tccttgctgt gatttgatgg attcaaaatc agcgggggac gccaatgaag cgctttatcc 121 agggagagca ccgagggcaa agcacactgc ttcccgagag cttggatgac tacgtggcgg 181 acaccaaccc ggtgcgggtg gtcgatgttt tcgtcgatga actcgacctt ggcctactgg 241 gtttcgaggg tgtcgtcccg gcggaaaccg gcagacccgc ctaccatcct gctgacctgc 301 tgaagatcta catctacggt tacctcaacc gtatccagtc cagtcgacgt ctcgaacgcg 361 agagtcagcg caacgttgag ttgatgtggc tgaccggacg tttgatgccg gacttcaaga 421 ccatcgccaa cttccgcaag gataacggca aggcaatccg cggcgtctgt cggcagttcg 481 tggtgctgtg ccagcaactt ggcctgttct ctgaagcgct ggtagccatt gatggcagca 541 agttcaaggc ggtcaacaac cgtgaccgca atttcaccag cgccaagctt cagcggcgaa 601 tggaggagat cgagtccagc atcaaccgtt acctgaccgc actggatacc gctgatcgcc 661 aggaaccggc cgtggcgcag gtcaaagccg aacgcctcca cgacaagatt gcgaccttga 721 aaactaagct gcgggagctc aaggaagtcg aggtacagct caacgaaaca ccggataaac 781 agatctccct gaccgatccc gatgcccgct caatgaagac ccggggcagc ggaatagtcg 841 gctacaacgt gcaggcggcg gtcgacgcga agcaccacct gatcgtgacc cacgaggtca 901 cgaacgacgg ggtcgatcga gaccaactga gctccatggc caagcaagcg cgagaggcca 961 tgggtgtcga ggaactctcg gcggtcgcag acagagggta tttcaaaggc gaagaaatcc 1021 tggcgtgcca tgaggctgga atcaccgttt tcgtgcccaa gacgctgacc tcgggagcga 1081 cagcggctgg tcgcttcggc aaaggtgatt tcatctatga cgcagccaag aacgagtatc 1141 gatgcccggc tgggcaaagc ctgatctggc ggttctcaag cgtcgaaaaa gggctgaaac 1201 tgcaccgcta ctggagttcg cattgccagg gttgtgcgtt gaaagagcac tgtacgccta 1261 gctcagagcg ccgagtgagc cgatgggagc atgaggcagt gctcgaagcg atgcagagtc 1321 gcctggatca agcgcctgaa atgatgcgaa tccgccgtca gacggtcgag cacccgttcg 1381 gcacgctgaa gagctggatg ggcgccaccc acttcctcac caagactctc gaccgagtga 1441 gtaccgagat gagcctgcat gtgctcgcct acaatctcaa acgcgtgttg aacgtgctgg 1501 gcagcggtgc cctgatggca gcgatgaagg cctgaggcct gttctacgac tcgtaccgcc 1561 ctccagcagg cgtactgaag ccgaaagtgc catagcaacc agaattatcg attgcgcctg 1621 attgggcctc cgacggcctc ctagacgctg agaaaatccc cggaagttga tggtcatcgt 1681 ttgctgcgtt tttacacggt ctgggccatc agcggacgca gggaggactt tccgcaaccg 1741 gccgttcgat gcggcaccga tggccttcgc gcaggggtag tgaatccgcc aggattgact 1801 tgcgctgccc tacctctcac tagtgagggg cggcagcgca tcaagcggtg agcgcactcc 1861 ggcaccgcca actttcagca catgcgtgta aatcatcgtc gtagagacgt cggaatggcc 1921 gagcagatcc tgcacggttc gaatgtcgta accgctgcgg agcaaggccg tcgcgaacga 1981 gtggcggagg gtgtgcggtg tggcgggctt cgtgatgcct gcttgttcta cggcacgttt 2041 gaaggcgcgc tgaaaggtct ggtcatacat gtgatggcga cgcacgacac cgctccgtgg 2101 atcggtcgaa tgcgtgtgct gcgcaaaaac ccagaaccac ggccaggaat gcccggcgcg 2161 cggatacttc cgctcaaggg cgtcgggaag cgcaacgccg ctgcggccct cggcctggtc 2221 cttcagccac catgcccgtg cacgcgacag ctgctcgcgc aggctgggtg ccaagctctc 2281 gggtaacatc aaggcccgat ccttggagcc cttgccctcc cgcacgatga tcgtgccgtg 2341 atcgaaatcc agatccttga cccgcagttg caaaccctca ctgatccgca tgcccgttcc 2401 atacagaagc tgggcgaaca aacgatgctc gccttccaga aaaccgagga tgcgaaccac 2461 ttcatccggg gtcagcacca ccggcaagcg ccgcgacggc cgaggtcttc cgatctcctg 2521 aagccagggc agatccgtgc acagcacctt gccgtagaag aacagcaagg ccgccaatgc 2581 ctgacgatgc gtggagaccg aaaccttgcg ctcgttcgcc agccaggaca gaaatgcctc 2641 gacttcgctg ctgcccaagg ttgccgggtg acgcacaccg tggaaacgga tgaaggcacg 2701 aacccagtgg acataagcct gttcggttcg taaactgtaa tgcaagtagc gtatgcgctc 2761 acgcaactgg tccagaacct tgaccgaacg cagcggtggt aacggcgcag tggcggtttt 2821 catggcttgt tatgactgtt tttttgtaca gtctatgcct cgggcatcca agcagcaagc 2881 gcgttacgcc gtgggtcgat gtttgatgtt atggagcagc aacgatgtta cgcagcaggg 2941 cagtcgccct aaaacaaagt tatgccgcac tcacccccat ggagttttga tgttcaaact 3001 tttgagtaag ttattggtct atttgaccgc gtctatcatg gctattgcga gtccgctcgc 3061 tttttccgta gattctagcg gtgagtatcc gacagtcagc gaaattccgg tcggggaggt 3121 ccggctttac cagattgccg atggtgtttg gtcgcatatc gcaacgcagt cgtttgatgg 3181 cgcagtctac ccgtccaatg gtctcattgt ccgtgatggt gatgagttgc ttttgattga 3241 tacagcgtgg ggtgcgaaaa acacagcggc acttctcgcg gagattgaga agcaaattgg 3301 acttcctgta acgcgtgcag tctccacgca ctttcatgac gaccgcgtcg gcggcgttga 3361 tgtccttcgg gcggctgggg tggcaacgta cgcatcaccg tcgacacgcc ggctagccga 3421 ggtagagggg aacgagattc ccacgcactc tctagaagga ctctcatcga gcggggacgc 3481 agtgcgcttc ggtccagtag aactcttcta tcctggtgct gcgcattcga ccgacaactt 3541 agttgtgtac gtcccgtctg cgagtgtgct ctatggtggt tgtgcgattt atgagttgtc 3601 acgcacgtct gcggggaacg tggccgatgc cgatctggct gaatggccca cctccattga 3661 gcggattcaa caacactacc cggaagcaca gttcgtcatt ccggggcacg gcctgccggg 3721 cggtctagac ttgctcaagc acacaacgaa tgttgtaaaa gcgcacacaa atcgctcagt 3781 cgttgagtag caggcagatg cggcataaca tgaagttgca gccgaccatc actccgctgc 3841 gctccgttct ggcggctgaa cttcggcgtt gggcattaag gaaaagttaa tggcaatccg 3901 aatcttcgcg atacttttct ccattttttc tcttgccact ttcgcgcatg cgcaagaagg 3961 cacgctagaa cgttctgact ggaggaagtt tttcagcgaa tttcaagcca aaggcacgat 4021 agttgtggca gacgaacgcc aagcggatcg tgccatgttg gtttttgatc ctgtgcgatc 4081 gaagaaacgc tactcgcctg catcgacatt caagatacct catacacttt ttgcacttga 4141 tgcaggcgct gttcgtgatg agttccagat ttttcgatgg gacggcgtta acaggggctt 4201 tgcaggccac aatcaagacc aagatttgcg atcagcaatg cggaattcta ctgtttgggt 4261 gtatgagcta tttgcaaagg aaattggtga tgacaaagct cggcgctatt tgaagaaaat 4321 cgactatggc aacgccgatc cttcgacaag taatggcgat tactggatag aaggcagcct 4381 tgcaatctcg gcgcaggagc aaattgcatt tctcaggaag ctctatcgta acgagctgcc 4441 ctttcgggta gaacatcagc gcttggtcaa ggatctcatg attgtggaag ccggtcgcaa 4501 ctggatactg cgtgcaaaga cgggctggga aggccgtatg ggttggtggg taggatgggt 4561 tgagtggccg actggctccg tattcttcgc actgaatatt gatacgccaa acagaatgga 4621 tgatcttttc aagagggagg caatcgtgcg ggcaatcctt cgctctattg aagcgttacc 4681 gcccaacccg gcagtcaact cggacgctgc gcgataaaac cgcgcagcgc cggttacttc 4741 aacgttaggc atcacaaagt acagcatcat gaccaacagc aacgattccg tcacactgcg 4801 cctcatgact gagcatgacc ttgcgatgct ctatgagtgg ctaaatcgat ctcatatcgt 4861 cgagtggtgg ggcggagaag aagcacgccc gacacttgct gacgtacagg aacagtactt 4921 gccaagcgtt ttagcgcaag agtccgtcac tccatacatt gcaatgctga atggagagcc 4981 gattgggtat gcccagtcgt acgttgctct tggaagcggg gacggatggt gggaagaaga 5041 aaccgatcca ggagtacgcg gaatagacca gttactggcg aatgcatcac aactgggcaa 5101 aggcttggga accaagctgg ttcgagctct ggttgagttg ctgttcaatg atcccgaggt 5161 caccaagatc caaacggacc cgtcgccgag caacttgcga gcgatccgat gctacgagaa 5221 agcggggttt gagaggcaag gtaccgtaac caccccagat ggtccagccg tgtacatggt 5281 tcaaacacgc caggcattcg agcgaacacg cagtgatgcc taacccttcc atcgaggggg 5341 acgtccaagg gctggcgccc ttggccgccc ctcatgtcaa acgttaggcc gcatggacac 5401 aacgcaggtc acattgatac acaaaattct agctgcggca gatgagcgaa atctgccgct 5461 ctggatcggt gggggctggg cgatcgatgc acggctaggg cgtgtaacac gcaagcacga 5521 tgatattgat ctgacgtttc ccggcgagag gcgcggcgag ctcgaggcaa tagttgaaat 5581 gctcggcggg cgcgtcatgg aggagttgga ctatggattc ttagcggaga tcggggatga 5641 gttacttgac tgcgaacctg cttggtgggc agacgaagcg tatgaaatcg cggaggctcc 5701 gcagggctcg tgcccagagg cggctgaggg cgtcatcgcc gggcggccag tccgttgtaa 5761 cagctgggag gcgatcatct gggattactt ttactatgcc gatgaagtac caccagtgga 5821 ctggcctaca aagcacatag agtcctacag gctcgcatgc acctcactcg gggcggaaaa 5881 ggttgaggtc ttgcgtgccg ctttcaggtc gcgatatgcg gcctaacaat tcgtccaagc 5941 cgacgccgct tcgcggcgcg gcttaactca ggtgttagat gctttgctgt gcgcacaaat 6001 ttcggccagc aacaagactg ttttttttct taaatcgaac ctaaaatttc ttcgcggaac 6061 tccatggaga aatattttga aaatttggtt atttctggct acgtccatta tttctgaggt 6121 cattgcaacc tctgcgctca agtctagtga gggctttact aggttagtac cgtcttttat 6181 cgtcgtagcg ggatacgctg ctgcttttta tttcctgtcg ctgacactca aatcgattcc 6241 tgttggaatc gcctacgcag tttggtcggg cctcgggatc gtcttggtca ctgcgattgc 6301 atgggttttg catggtcaaa aactagatat gtggggattt gttggtgtcg gcttcattat 6361 cagcggcgtt gctgtgctca acttgctatc taaggcaagt gttcactaaa acggtcgcat 6421 ctaaccattc cgtcgagagg gaccgcccac aagctgcgct tgcgggttcc cttcgcggct 6481 tcgccgctac ggcggcccct cacgtcaaac gttgaacgac agctttccca aaagctctac 6541 ggctgctctg ggtcgacacc ggtaatcgga tcgttgccgc actgaacagc gccccgttcc 6601 aggtcgcctc catttatgcg gctgaaccga gggagagcag ctttacgccg tctggccgca 6661 gttcgccctt gggcgacacg tgccggtaga gcgtctgccg ggtaatcccg agttcttcgc 6721 agagatcgcc caccttggtt tccggttgcc ccatgctggc catcgccagg cgtagcttgg 6781 cggcggtcat cttgaagggg cgcccccctt tcctgccgcg agcgcgcgcc gagataagtc 6841 cagcgactgt tcgctcggaa atcaactcac gctcgaactc ggccagcgcg gcaaaaatac 6901 cgaacacaag cttgccggcg gcagtcgtcg tgtcgaccgc cgcaccgtga ccggtcagga 6961 ccttcaggcc cacgctacgc gcagttaggt cgtgcacggt gttgatcagg tggcgcagat 7021 cacggccaag ccgatcgagc ttccacacga tcagcgtgtc cccttcacga agcgccttca 7081 ggcaagcagc caaccctggg cgatcatcgc gcctgcccga ggccagatcc tcgtaaaggt 7141 gcgcaaggct cacaccagcg gcgatgagcg aaaagcgttg caaattggtg gactgggatc 7201 c //