LOCUS AY236757 4528 bp DNA linear VRL 25-JUL-2016 DEFINITION Recombinant M-MuLV/RaLV retrovirus clone 31 long terminal repeat, complete sequence; gag protein gene, complete cds; and pol protein gene, partial cds. ACCESSION AY236757 VERSION AY236757.1 KEYWORDS . SOURCE Recombinant M-MuLV/RaLV retrovirus ORGANISM Recombinant M-MuLV/RaLV retrovirus Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus. REFERENCE 1 (bases 1 to 4528) AUTHORS Villanueva,R.A., Campbell,S. and Roth,M.J. TITLE Molecular analysis of a recombinant M-MuLV/RaLV retrovirus JOURNAL Virology 315 (1), 195-208 (2003) PUBMED 14592771 REFERENCE 2 (bases 1 to 4528) AUTHORS Villanueva,R.A. and Roth,M.J. TITLE Direct Submission JOURNAL Submitted (12-FEB-2003) Biochemistry, RWJMS/UMDNJ, 675 Hoes Lane, Piscataway, NJ 08854, USA FEATURES Location/Qualifiers source 1..4528 /organism="Recombinant M-MuLV/RaLV retrovirus" /proviral /mol_type="genomic DNA" /host="rat" /db_xref="taxon:221982" /clone="31" repeat_region 1..594 /rpt_type=long_terminal_repeat misc_binding 595..612 /bound_moiety="pro-tRNA primer" CDS 1085..2650 /codon_start=1 /product="gag protein" /protein_id="AAO46142.1" /translation="MGQSLTTPLSLTLDHWKDVRDRARDQSVEIKKGKWQTLCTSEWP TYDVGWPVNGTFNKTTILQVKDLIFRQKPYGHPDQVAYIVTWESLAFSPPPWAEPFVD PNWLPVSPKPVSPSPPDPLVASSSLYPALTKEESPKVPPPKPVLPEDPNSPLIDLLLE EPPPYPVPTAPPREEEVEPPARPRLEAAPSPVAGRLRGRREVAPDSTSQAFPPRQGAG GQMQYWPFSAADIYNWKQHNPPFSKDPVALTNLIESVLLTHQPTWDDIQQLLQALLTS EEKQRVLLEARKHVLGDNGRPTLLPEEIDDAFPLTRPDWDFTTAEGRRHLRLYRQLLL AGLRGAARRPTNLAQVKQVVQEAAETPSAFLERPKEAYRMYTPYDPDDPGQMTNVSMS FIWQAAPDIRAKLQRIENLQGYTLQDLLKEAERIYNKRETQEEKEDRVRREKDERDRK RNRELSRILAAVVQGQGKRGERVGVRKGPKLDKDQCAYCKERGHWARDCPKKPSGLRR PRPQTSLLALDKD" CDS <2651..>4528 /codon_start=1 /product="pol protein" /protein_id="AAO46143.1" /translation="GGQGQEPPPEPRITLEVGGQPVTFLMDTGAQHSVLTQAPGQLSD RTAWVQGATGSKRYRWTTDRRVQLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHF EEGGTRVTGPRGIPLQILTLQLEDEYRLYEPEQDKPKSPEIDSWVTKFPLAWAETGGM GLALQQPPLIIQLKATATPVSIKQYPMSWEAYQGIKPHIRRLLDQGILVPCRSPWNTP LLPVKKPGTGDYRPVQDLREVNKRVEDIHPTVPNPYNLLNTLPPTHTWYTVLDLKDAF FCLRLSPESQPLFAFEWKDSEMGLSGQLTWTRLPQGFKNSPTLFDEALHRDLADFRVQ HPTLILLQFVDDLLLGATSETACHQGTESLLQTLGRLGYRASARKAQICQTQVTYLGY QLRVGQRWLTPARKQTVANIPAPRNGRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTK QGVLFQWGAEQQEAFDNIKRALLSSPALGLPDITKPFELFVDEKQGYAKGVLTQRLGP WKRPVAYLSKKLDPVASGWPPCLRMVAAIAVLTKDAGKLTLGQPLTILAPHAVEALIK QPPDRWLSNSRMTHYQALLLDAERVQFGPVVALNPATLLPLPEEAEQHDCLQILAEVH GT" BASE COUNT 1095 a 1267 c 1171 g 995 t ORIGIN 1 tgaaagaccc cacctgtagg tttggcaagc tagcttaagt aacgccattt tgcaaggcat 61 ggaaaaatac ataactgaga atagagaagt tcagatcaag gtcaggaaca gatggaacag 121 ctgaatatgg gccaaacagg atatctgtgg taagcagcct gccccggctc agggccaaga 181 acagatggaa cagctgaata tgggccaaac aggatatctg tggtaagcag cctgccccgg 241 ctcagggcca agaacagatg gtccccagat gcggtccagc cctcagcagt ttctagagaa 301 ccatcagatg tttccagggt gccccaagga cctgaaatga ccctgtgcct tatttgaact 361 aaccaatcag ttcgcttctc gcttctgttc gcgcgcttct gctccccgag ctcaataaaa 421 gagcccacaa cccctcactc ggcgcgccag tcctccgatt gactgagtcg cccgggtacc 481 cgtgtatcca ataaaccctc ttgcagttgc agttgcatcc gacttgtggt ctcgctgttc 541 cttgggaggg tctcctctga gtgattgact acccgtcagc gggggtcttt catttggggg 601 ctcgtccggg atcgggagac ccctgcccag ggaccaccga ccacccaccg ggaggtaagc 661 cggccggcat ctgtcgtgtc ttgccctgtc ttgtcttgtc ttgtcctgtg cgcgtgttca 721 gttcgtctca gttttggact cagatctggg ttttggtcgg aggagaaggc ccagggcctt 781 cggtgtctca gggttcagga ccctcagcgc ctccgtttgg gcgggtcaga gaaggagctg 841 acgagcttgg acttctcccc ccggcagccc tggaagacgt tccaagggtg tctggagccc 901 ggttctttgg ggctcagccc gtatcgtggc tttggttgga ggagagggtc caggaccctc 961 ggcacctcca tctgactctt tgttttgggt tttacgtcga agccgcgcgg cgcgtctgtc 1021 tgttgtttgt ctgatcgttg gatttgtctg tctaatctgt gccctaattt tctttgaagc 1081 taccatggga caatcgctaa caaccccctt gagtctcact ctagaccatt ggaaggacgt 1141 ccgagaccga gcacgtgatc agtcggtcga gatcaagaaa ggaaaatggc agaccctctg 1201 cacgtccgag tggcccactt acgatgtagg atggccggtg aacggcactt ttaacaagac 1261 cactattttg caggttaagg acctgatttt ccgccagaag ccgtacggac accctgacca 1321 ggtggcctac attgtcacct gggagagctt ggcatttagc cctcctcctt gggcagaacc 1381 ctttgtggac ccgaattggc ttcctgtttc ccctaaacct gtttccccga gcccacctga 1441 ccctttggtt gcttcttcct ctctctatcc tgctctaact aaggaagaat ctcccaaagt 1501 ccctcccccg aaacctgtcc tcccagagga cccaaattcc ccccttatag atctcctgtt 1561 ggaagaacct cctccgtacc ctgtacctac agccccgcca agagaagagg aagtggagcc 1621 gcctgctaga cctcgactcg aggcggcccc ttcccctgtg gctggaagac ttcggggacg 1681 acgcgaggtg gcgccagact ccacctccca ggcctttccg cctagacaag gggctggcgg 1741 ccagatgcaa tactggccat tctcagcggc cgacatatat aactggaaac aacacaaccc 1801 ccccttttct aaggatccgg tggctctcac caacctgata gaatctgtct tgcttaccca 1861 tcagcccact tgggatgata tacagcaact tttacaggcc ctcctgacct ctgaggagaa 1921 gcagagagtg ctcttagagg ccaggaaaca tgttttgggg gacaatggac gccccacctt 1981 gctcccggaa gagatcgatg atgcattccc acttacaaga cctgattggg atttcaccac 2041 ggctgaaggt aggagacacc tacgccttta tcgccagttg ctcctagcgg gtctccgagg 2101 ggcggcacga cgccccacca atttggctca ggtgaaacaa gtggtacaag aggctgcgga 2161 gactccctca gccttcctag agagacctaa ggaagcttat cgcatgtata ccccttatga 2221 tccagatgat ccaggacaaa tgacaaatgt ctccatgtcc ttcatctggc aggcagcacc 2281 agatatcagg gccaagctac agagaataga aaatttacaa gggtatacac tgcaggattt 2341 acttaaggag gcagaaagaa tttataacaa gagagagaca caagaagaaa aggaagatag 2401 agtacgtaga gaaaaggatg agagagaccg aaaaagaaac agagagttga gtcgaatctt 2461 ggccgccgta gttcagggtc aaggaaaaag gggagagagg gtgggagttc gaaaggggcc 2521 aaagctagat aaggatcaat gtgcgtattg caaagaaaga ggacactggg ccagagattg 2581 ccctaagaaa cccagcgggc tccgaagacc ccgcccacag acctccctct tggccctaga 2641 taaagattag ggaggtcagg gccaggagcc cccccctgag cccaggataa ctcttgaagt 2701 tggggggcag ccagtcacct ttctgatgga cacaggagcc cagcactcag tcctcaccca 2761 ggctcctgga caactcagcg accggacggc ctgggtacaa ggagccactg gcagcaagag 2821 ataccgttgg actacagatc gacgggttca gctggctact ggtaaggtga cccattcctt 2881 cttacatgtt ccggactgcc cataccctct gctgggccgt gacttgctta ccaaattaaa 2941 agctcagatc cattttgaag aaggagggac ccgagtaacc gggccccgcg gtattcctct 3001 tcagatttta acccttcagt tagaagatga atatagatta tatgaaccag aacaggacaa 3061 gccaaaatct ccagaaatag actcttgggt cacgaaattc ccactggcct gggcagagac 3121 tggcgggatg gggttggcgc tccaacagcc tcccctaatt atccagttaa aggccaccgc 3181 gactcctgtc tccattaaac agtaccccat gtcatgggaa gcttatcagg gcataaagcc 3241 acatatcagg aggctcttag accaaggcat cctagtccct tgccggtcac cctggaatac 3301 gcctctgcta cctgttaaga agcccggcac tggagactat aggccagtac aagatttgag 3361 agaggtcaac aaaagagtag aagatattca tccaactgtc ccaaaccctt ataatctact 3421 caacaccctg cctcccaccc atacttggta tacggtctta gatctgaagg atgctttctt 3481 ctgcctccgg ctgagcccag aaagccagcc cttatttgct tttgagtgga aagactctga 3541 aatggggctt tcgggacagt tgacttggac aaggttacca cagggtttca aaaacagccc 3601 aacgctcttt gatgaggcct tacaccggga cttggctgac tttcgagtcc agcatcccac 3661 tcttatactt cttcagtttg ttgatgacct tcttctaggg gccacttctg agacagcatg 3721 ccaccaggga acagaatccc tcttgcagac tttggggcga ttgggctatc gagcttctgc 3781 cagaaaggct caaatttgcc agacccaggt tacttattta ggctatcaac taagggtcgg 3841 acagcgatgg ctgactccgg ctaggaaaca gaccgtggcc aacatcccag ccccaagaaa 3901 tggccgacag ctacgggaat tcctaggaac ggcgggattc tgccgcctct ggattcctgg 3961 gtttgccgag atggcagccc ccttgtaccc tctcactaaa cagggggtgc tctttcagtg 4021 gggggcagaa caacaggagg catttgataa cattaaacgg gccttgctgt cctcccctgc 4081 cttgggtctc ccagacatca ccaagccctt tgaactattt gtggatgaga agcaagggta 4141 tgctaagggg gtcctaacac aaagactggg accctggaag cgcccggtag cctacctgtc 4201 taagaaatta gaccctgtgg cctctggttg gccaccatgc ctgagaatgg tggcagccat 4261 tgccgtccta actaaagacg ctgggaagtt gaccttgggg cagccactca ccatcctggc 4321 accccatgca gtggaggctt tgataaaaca gccccctgac cgctggctct ccaattcccg 4381 catgacccac taccaagcct tgctactgga tgcggaacgg gtccagtttg ggcccgtggt 4441 cgctctcaac ccagccactc tgcttccttt gccagaggag gcagaacagc acgactgtct 4501 gcagatcctc gcagaagtac atggaacc //