LOCUS AY220100 8117 bp DNA linear BCT 23-SEP-2010 DEFINITION Sphingomonas elodea strain ATCC31461 small protein B (smpB), hypothetical protein, gellan polysaccharide biosynthesis regulator protein (gelA), and putative valyl-tRNA synthetase (valS) genes, complete cds. ACCESSION AY220100 VERSION AY220100.1 KEYWORDS . SOURCE Sphingomonas elodea ATCC 31461 ORGANISM Sphingomonas elodea ATCC 31461 Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 8117) AUTHORS Harding,N.E., Patel,Y.N. and Coleman,R.J. TITLE Organization of genes required for gellan polysaccharide biosynthesis in Sphingomonas elodea ATCC 31461 JOURNAL J. Ind. Microbiol. Biotechnol. 31 (2), 70-82 (2004) PUBMED 14767675 REFERENCE 2 (bases 1 to 8117) AUTHORS Harding,N.E., Patel,Y.N. and Coleman,R.J. TITLE Direct Submission JOURNAL Submitted (15-JAN-2003) Fermentation Sciences, CP Kelco, 8355 Aero Drive, San Diego, CA 92123, USA FEATURES Location/Qualifiers source 1..8117 /organism="Sphingomonas elodea ATCC 31461" /mol_type="genomic DNA" /strain="ATCC 31461" /db_xref="ATCC:31461" /db_xref="taxon:1081640" gene 105..587 /gene="smpB" CDS 105..587 /gene="smpB" /codon_start=1 /transl_table=11 /product="small protein B" /protein_id="AAP46182.1" /translation="MARPRPATFDKVKTVAENRRARFDYFIEQTYEAGLVLTGTEVKS LRFGEGSIAEAYAEVKDEXVWLVNANIPEFSHGNRFNHEAKRPRKLLLHEREINKLHG AVAREGMTLVPLSVYFNGKGRAKVELALAKGKKTHDKRETIKERDWKREQSRILRDRG " CDS complement(1158..2438) /note="orf426" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AAP46183.1" /translation="MYDLTQTSFLFSVYANAASSIEGTAPQLAGLLGLALDQGGSWSN GTQTYAVRGLLNEIGGQLYGGDWEVAWGPAVYQPANTRYAANAMAVLYSKALDLHVVA TAGTNMDDIYDWFREDLPLGPNAMVDFPVSLATPPKGGAANGTVPQVSLGTAQGIYDL LVNMVDQNGVTVSLLDYLSGLTPGIAGTSTILFVGHSLGGALSATLPLQVLATIKDWA WTAQGGKVDAMPTAAPTPGNQLFSNLWASQLQPVPVAGTAAANQVTALNVPIEDAVDL VPHAWTNIFAETQDPSDPYYFFDSTLIPPTLGSLTVKLGGLLAPPVALAARAAQQNGE GALIAKLPNVQQLQPSFPISYWNAATQAFASYSLPPAPVTDIPTFKTMLFMVHVWQYF QFFGITTSALPYPITAQQSGKAAAGTRLAATEQA" gene 2778..5168 /gene="gelA" CDS 2778..5168 /gene="gelA" /note="two component sensor kinase/response regulator" /codon_start=1 /transl_table=11 /product="gellan polysaccharide biosynthesis regulator protein" /protein_id="AAP46184.1" /translation="MASLPDAELPKPSLLLPLAAVVVTGVLAAGVILLSIGDRTVAAG FLGAAVLAAGLMLASARLFRTPMTVERYTDWAIAHALASASDDALAVTDRSGRLVCAN SRYEALFGGWPTPPNLPIGEEGNRALGACARAAWRDGESRCGDVQVFGAQVAVRVARV GDESLVWRFIGIHALDLAVQVQGLLAGQTGDRLGGAGVMVVLVAPDGRIRSANRVFRH RALGSADMIADGRDFARLLITDSVGQVRFEREGIEGTPLRVLQIPFLEGDEAPLLVAL LDEEPAVIASPALGGSASHHVRSLISILPTGLALIDRDGRFLMMNDAFVRTARVNSAA PPLYPGDLVVREDKATLADAVRRFAGGAPQSLEITVRLKDVSEEPVAITIAGARGLGD AAVLLSLRDSGEEGKLKRQIAQATKMQAVGQLAGGVAHDFNNILTAIIGHCDLMLMRH SPGDSDYDDIQQIRANSNRAASLTRQLLAFSRQQTLRPQVLQLPDIISEVSNLLKRLL GETVSLDVKHGRNLGPVRADPGQLEQVVVNLAVNARDAMLSKNPSGGGSLTIETLAVS AAEVRRMEDDVLPVGDYTALRISDTGTGIPPEILPKIWEPFFTTKEVGKGTGLGLSTV YGIIKQSGGYIFAENVPGAGAAFTIYLPVHAAPEAAVAKLPVTKEKPADLWGTGTILV VEDEDMVRAIAERALSRQGYSVVTAENGEVALETIETMDKPDLLVSDVVMPVMDGPSM ARKVRERWPDLPILFMSGYAEEQLRRSIDLDNVAFLPKPFSVQQLAEAVQEILVAK" gene 5628..8063 /gene="valS" CDS 5628..8063 /gene="valS" /codon_start=1 /transl_table=11 /product="putative valyl-tRNA synthetase" /protein_id="AAP46185.1" /translation="MTELPKTFDPAEIESRWYAHWEDEGLFRPERTGAEPWTIVNPPP NVTGSLHIGHALDNTLQDILVRHARLKGKDARWVVGTDHAGIATQMVVERQLNAAGSK RTDFTREAFVDKVWEWKAESGGQITRQLRRLGCSMDWANERFTMDEGFSKAVLKVFVE LYRQGLVYRDKRLVNWDPGLGTAISDLEVETKEVRGNFWHLRYPLADGSGYIQVATTR PETMLADMAVAVHPEDERYKALIGKQVRLPITDRLIPIVGDEHADPELGSGAVKITPG HDFNDFEVGVRAGIKAGEMLNMLDAKAAICQTQDGLVPAELIGLDRFEARKVIVARLK DEGFLVPWTDKEGAEHDAEPRTIQTPYGDRSGQVIEPWLTDQWYVDAATLAKPAIEAV RSGATKIVPKSWEKTYFNWMENIQPWCVSRQLWWGHRIPAWFDAEGKPYVAETEEEAQ AEAGEGVALTRDPDVLDTWFSSALWPFATLGWPENSDPTLGGRYSNDVLISGFDILFF WDARMMMQGLHFMKEVPFKTLYLHGLVRAADGQKMSKSKGNTVDPLGMIDKYGADALR FFMAAMESQGRDIKMDEKRLEGYRNFATKLWNAARFCQANGIAASKSLEAPTAELAVN RWIIAETIATVXALDLALADLRFDEAANCIYQFVWSRFCDWYLELIKPVLQGEGVAAA QAEETRAVAGWALDQILVMLHPFMPFITEELWSKMGPREHDLIVAKWPMADARALDPS AAQEIDWLIRLVSEIRAARTELNVPPGARLPLHVRDASAETAXRLIGQEAALARLGRV DQAQGDAPAGGGA" BASE COUNT 1369 a 2630 c 2760 g 1346 t ORIGIN 1 gtcaatgcgg gcgctggaat tcgccgggct gctttgacga acggaccggg gcgccaacaa 61 acggctggcg tccggcctgt ccctccctac atcccgcgct ttttatggcc cgtccgcgtc 121 ccgcaacctt cgacaaagtg aagaccgtcg ccgagaaccg gcgcgcgcgc ttcgattatt 181 tcatcgagca gacctacgag gccggcctgg tgctgaccgg aaccgaggtg aagtcgctgc 241 gcttcggcga gggctccatc gccgaggcct atgccgaggt gaaggacgag scggtgtggc 301 tggtcaacgc caacattccc gaattcagcc acggcaaccg cttcaaccac gaagccaagc 361 grccgcgtaa attgctcctt cacgagcgcg agataaacaa gctgcacggc gccgtcgccc 421 gcgaaggcat gacgctggtg cccctgtcgg tgtacttcaa cggcaagggg cgcgcgaagg 481 tggagctggc gctggcgaag ggcaagaaga cgcatgacaa gcgcgaaacc atcaaggaac 541 gcgactggaa gcgcgagcag tcgcgcatcc tccgggaccg cggctgagat ggcgaagacg 601 ggccgcctgc ggcgcctggc ggacaaggcg gtgcccagcc gcgaatcgat cgagaccaat 661 cgctggctca agccggtcgc gggccgtgtg atgcactcct cgctttggcg cttcacccgg 721 cgatcggtgc cgcggggcgt ggccctgggc atgctgaccg gcatcctggt gccgatgggt 781 cagattcctg cctcggcggt gctggcactt ccgctgcggg cgaacattcc ggcgrcggct 841 gcgaacgact ttcttcacca acccgttcac gacgccgccg ctttgggtgg cggcctattg 901 gatcggcagc cggatcctcg gcccggcgac tgcgcgggaa gcgtcggcgg cggtgccttc 961 gtggatggac tggctgctgc acgatgccgg tcccgcgacg ctcaccgggc tggtgaccat 1021 cgcggtggta ctggcggtgc tcggctattt cggcagcgcg ctgctgtggc gctggtggat 1081 tgccggcaaa tggcgccggc ggcgccaggc gcggagcgga accgccgcga acgtctgagt 1141 tccgccccgc gcaccggtca cgcctgctcg gtcgcggcga ggcgggtgcc tgctgccgcc 1201 ttgccggact gctgcgccgt gatcggatag ggcagggcgc tcgtcgtgat cccgaagaac 1261 tgaaaatact gccagacatg gaccatgaag agcatggtct tgaaggtcgg aatgtccgtt 1321 acgggtgcgg gcggcagact gtagctcgca aaggcctgcg tggccgcgtt ccagtaggaa 1381 atcgggaaag agggctgcag ttgctgcacg ttcggcagct tcgcaatcag cgcgccctca 1441 ccattttgct gcgcggcgcg cgccgccagc gcgacgggcg gcgcgagcag cccgccaagc 1501 ttcaccgtca gcgagcccag cgtcggcggg atgagcgtgc tgtcgaagaa ataataggga 1561 tcggacggat cctgcgtctc ggcgaagatg ttggtccagg cgtggggcac aagatccacg 1621 gcatcctcga tggggacgtt gagtgccgtc acctggttgg cggccgcggt gccggccacc 1681 ggtaccggct gtagctggct ggcccacagg ttcgagaaca actggttgcc cggcgtcggc 1741 gcggcggtgg gcatcgcgtc gacctttccg ccctgtgccg tccacgccca gtccttgatc 1801 gtcgccagca cctgcagcgg cagggtggcg gaaagcgcac cgcccaggct gtggccgacg 1861 aacaggatcg tcgacgttcc cgcgatgccg ggcgtcagcc cggacagata gtccagcagg 1921 gagacggtga cgccgttctg gtcgaccatg ttgacgagca ggtcgtagat gccctgcgcc 1981 gtgcccagcg acacctgggg caccgtgccg ttggcggcgc cgcccttcgg gggggtcgcg 2041 agcgaaacag ggaagtcgac cattgcgttg ggtccgagcg gcaaatcctc gcggaaccag 2101 tcatagatgt cgtccatgtt ggtgccggcg gtagcgacaa catgcaggtc cagcgccttg 2161 ctgtagagca cggccatcgc gttggcggcg taccgcgtat tggcgggctg gtagacggcg 2221 ggtccccacg ccacttccca gtctccgccg tacagctgcc cgccgatctc gttcagcagg 2281 ccgcgaaccg cataggtctg cgtaccgtta ctccagcttc cgccctggtc cagcgcgagc 2341 ccgagaagcc cggccagctg gggcgcagtt ccctcgatcg acgaggcagc attggcgtag 2401 acggaaaaca agaagctcgt ctgggtaaga tcatacatga tgtatcccct ccgctattgt 2461 cctttcagag atgcaagatc tcgattgcga catttacgcg atcgggaggc gcgggtgtgg 2521 cggagattgg ttcataatcg tttcacaacg gatatttggc gcgacgcaca agcggcccgc 2581 cggtatactt tgcatcgtct tgcggccatc gtggggcgaa gttgcctcgc gatgcggcgc 2641 cagcaacgct cccgcacggt gacgaagagc gcaagggcct tgcacaatcg cagcggcggg 2701 cggcgagtat cgttcccgca cgcttgccgg agcgatcgcc gcttgacgct gaggcagcga 2761 ccgaacaacg gtggctcatg gccagtctgc ccgatgccga gctgccaaaa ccgtccctgc 2821 tgctgccgct cgcggcggtg gtggtcaccg gcgtcctcgc ggcgggcgtg atcctgctga 2881 gtatcggcga ccgcaccgtc gccgccggct ttctcggcgc tgcggtgctc gccgccggat 2941 tgatgctcgc cagcgcccgg ttgtttcgca cgcccatgac ggtggagcgg tatacggact 3001 gggcgatcgc ccatgcgctt gcctccgcca gcgatgacgc cctcgccgtg accgatcgca 3061 gcggccggtt ggtttgcgcc aattcccgct atgaggcgct gttcggcggc tggccgactc 3121 cgcccaacct tccgatcggc gaagaaggca atcgcgcgct cggcgcctgt gcacgtgccg 3181 cctggcggga cggcgaaagc cgctgcggcg acgtgcaggt gttcggcgcg caggtggccg 3241 tccgcgtcgc gcgggtgggg gatgaatcgc tcgtctggcg gttcatcggc attcacgcac 3301 tcgatctggc ggtgcaggtg caggggctgc tcgcgggcca gaccggcgac cggcttggcg 3361 gggccggggt gatggtggtg ctggtggcgc cggatggccg catccgttcg gccaaccgcg 3421 tcttccgcca ccgtgcgctg ggcagcgctg atatgattgc cgacgggcgt gatttcgccc 3481 ggttgctgat caccgattcg gtcggccagg tccgcttcga gcgtgagggc atcgagggta 3541 cgccgctgcg cgtgctgcaa atcccgttcc tggaaggcga cgaggccccg ctgctggtgg 3601 cgctgctcga cgaggagccg gcggtgatcg cgagccccgc gctgggcggc agcgcttccc 3661 accatgtccg ctcgttgatc tcgatcctgc cgacgggcct tgcgctcatc gatcgcgacg 3721 gccgcttcct gatgatgaac gacgcgttcg tccgcaccgc gcgcgtcaat tccgccgcgc 3781 cgccgctgta tccgggcgac ctcgtcgtgc gcgaggacaa ggcgacgctg gccgatgccg 3841 tgcgccggtt cgccggcggc gcgccgcagt cgctcgaaat caccgtgcgc ctgaaggacg 3901 tgtccgaaga gccggtggcg atcaccatcg ccggcgcgcg gggcctcggc gacgccgccg 3961 tgctcctcag ccttcgcgat tccggcgagg agggcaagct caagcgccag atcgcccagg 4021 cgaccaagat gcaggcggtg ggccagctcg ccggcggcgt tgcgcacgat ttcaacaaca 4081 tcctcactgc gatcatcggg cactgcgacc tgatgctgat gcgccattcg cccggcgaca 4141 gcgattatga cgacatccag cagatccgcg ccaactcgaa ccgcgcagcc agcctgaccc 4201 gccagctgct cgccttctcg cgccagcaga cgctccgtcc gcaggtgctg cagctgccgg 4261 acatcatttc cgaagtctcc aacctgctga agcggctgct cggcgagacg gtgtcgctcg 4321 acgtcaagca tggccgcaac ctgggaccgg tgcgggcaga cccgggccag ctcgagcagg 4381 tggtggtcaa cctcgcggtc aatgcgcgcg acgcgatgct cagcaagaac ccaagcggcg 4441 gcggctcgct taccatcgag acgttggcgg tctccgccgc cgaggtccgg cggatggagg 4501 acgacgtgct gccggtgggc gactatacgg cgctgcgcat ctccgacacc ggcacgggca 4561 tcccgcccga gatcctgccc aaaatctggg agccgttctt caccaccaag gaagtcggca 4621 agggcaccgg ccttggcctg tcgaccgtct acggcatcat caagcagtcg ggcggctata 4681 tcttcgccga gaacgtcccc ggtgcgggcg cggccttcac catctatctg ccggtccatg 4741 ccgcgcccga ggcggcggtc gccaagctgc cggtcaccaa ggaaaagccg gccgacctgt 4801 ggggcaccgg caccatcctg gtggtggagg acgaagatat ggtccgcgcc atcgccgaac 4861 gcgcgctcag tcgccaaggc tattcggtcg tcaccgccga gaatggcgaa gtcgcgcttg 4921 aaacgatcga gacgatggac aagcccgact tgctcgtctc cgatgtggtc atgccggtga 4981 tggacggccc cagcatggcc cgcaaggttc gcgaacgctg gcccgacctg ccgatcctgt 5041 tcatgtctgg ctatgccgag gaacaattac ggcgctcgat cgatctcgac aatgtcgcct 5101 ttctgccgaa acccttttct gtgcaacaac ttgcagaagc ggttcaggag atcctggtgg 5161 ccaaataagt gcttggcacg aaaccatttt tcctgcaaaa gggggctata tgcagggtcc 5221 gcggaacatt ctcatcgtcg aagacgaacc attgatcgcc atgatgctcg aggatttcct 5281 cgacgcgctg aaccgggtgg cggccggcac cgccgatacc gtggccgagg cgctcgatcg 5341 catcggcgcg ggcggcatcg acgccgcgat cctggacgtg aacctgcgcg gcggcgagca 5401 gagctggccg gtggcggaca agctggccga actcggcatt ccgttcgtgc tggcgaccgg 5461 cggcgcggac gacagcatcg cgccgctcca ccgcgatcgt ccggtgcttt ccaagccgtt 5521 caccctcgac cgcgtcgaca aggtactcag cacgctcagc tgagctgatt tgagtggacg 5581 gccaagggtt gtgcgcaggg caggggcgac gctaaagccc ctgcaccatg accgaactcc 5641 ccaagacctt cgaccccgcc gaaatcgaat cccgctggta cgcccattgg gaagacgaag 5701 gcctgttccg ccccgagcgc accggcgccg agccctggac gatcgtcaac ccgccgccca 5761 atgtgacggg cagcctgcac atcggccacg cgctcgacaa cacgctgcag gacatcctgg 5821 tccgccatgc gcggctgaag ggcaaggacg cgcgctgggt ggtcggcacc gatcatgccg 5881 gcatcgccac gcagatggtg gtcgagcgcc agctcaacgc ggccggtagc aagcgcaccg 5941 acttcacccg cgaggcgttc gtcgacaagg tgtgggaatg gaaggcggag agcggggggc 6001 agatcacgcg ccagctgcgc cggctcggct gctcgatgga ctgggcgaac gagcgcttca 6061 ccatggacga gggcttttcc aaggccgtcc tcaaggtgtt cgtcgagctc taccgccagg 6121 gcctggtcta ccgcgacaaa aggctggtga actgggatcc gggcctcggt accgcgatct 6181 cggacctcga ggtcgagacc aaggaggtcc gcggcaattt ctggcacctg cgctatccgc 6241 tggcggacgg ctcgggctac atccaggtcg cgacgacgcg gccggagacg atgctggccg 6301 acatggcggt cgccgtgcat cccgaggacg aacgctacaa ggcgctgatc ggcaagcagg 6361 tgcgcctgcc gatcaccgac cgcctgatcc cgatcgtcgg cgacgagcat gccgatccgg 6421 aactcggctc gggcgcggtg aagattacgc cgggtcatga tttcaacgac ttcgaggtgg 6481 gtgttcgcgc tggtattaaa gccggcgaga tgctcaacat gctcgatgcc aaggccgcga 6541 tctgccagac gcaggacggg ctggtgcccg ccgaactgat cgggctcgac cggttcgagg 6601 cgcgcaaggt gatcgtcgcg cggctgaagg acgagggctt cctcgtaccg tggaccgaca 6661 aggaaggcgc cgagcacgac gccgagccgc gcaccatcca gacgccctat ggcgaccgct 6721 cgggccaggt gatcgagccg tggctgaccg atcaatggta tgtcgacgcc gccaccctcg 6781 ccaagccggc gatcgaggcc gtgcgttcgg gcgcgaccaa gatcgtgccg aagagctggg 6841 aaaagaccta tttcaactgg atggagaaca tccagccctg gtgcgtcagt cgccagctct 6901 ggtgggggca ccggatcccg gcgtggttcg atgccgaggg caagccctac gtcgccgaga 6961 ccgaggaaga ggcgcaggct gaggctggag agggcgttgc gctcacccgc gatcccgacg 7021 tgctcgacac ctggttctcc tcggcgctgt ggccgttcgc gacgctcggc tggccggaga 7081 acagcgaccc gacgctcggc gggcgctatt cgaacgacgt gctcatttcg ggcttcgaca 7141 tcctgttctt ctgggatgcg cggatgatga tgcagggctt gcacttcatg aaagaggtgc 7201 cgttcaagac cctgtatctc catggtcttg tccgcgcagc cgacggccag aagatgtcca 7261 agtccaaggg caacacggtc gatccgctgg ggatgatcga caaatacggc gccgatgcgy 7321 tgcgcttctt catggcggcg atggagagcc agggccgtga catcaagatg gatgagaagc 7381 ggctggaggg ctatcgcaac ttcgcgacca agctgtggaa cgccgcacgc ttctgccagg 7441 ccaacggcat cgctgcctcc aagtctcttg aggcaccgac tgcggaactc gcggtaaacc 7501 gctggatcat cgccgaaacc atcgcgacgg tgcasgcgct ggacctcgcg ctggcggacc 7561 tgcgcttcga cgaggcggcg aactgcatct accagttcgt ctggagccgc ttctgcgact 7621 ggtatctgga actgatcaag ccggtgctgc agggcgaggg cgttgccgcc gcccaggcgg 7681 aggaaacccg cgccgtcgca ggctgggcgc tcgaccagat cctcgtgatg ctccacccgt 7741 tcatgccctt catcaccgaa gagctgtggt cgaagatggg cccgcgcgag catgacctga 7801 tcgtcgccaa atggccgatg gccgatgccc gcgcgctcga tccgtcggcg gcgcaggaga 7861 tcgactggct gatccggctg gtgagcgaga tccgcgcggc ccgtaccgag ctcaacgtgc 7921 cgccgggcgc gcggctgccg ctgcacgtcc gcgatgcgtc cgccgagacg gccgnccgtc 7981 tgatcgggca ggaagcggcg cttgcccgtc tcggncgcgt cgatcaggcg cagggcgatg 8041 caccggcggg cgggggcgct taacttcgtc gtcnatgaag gttacctttc gngatgccgt 8101 tcggnracgt nggtcga //