LOCUS AY074395 7435 bp DNA linear BCT 07-JUN-2002 DEFINITION Chlorobium limicola flavoprotein (soxF2), cytochrome c (soxX), sulfur covalently-binding protein (soxY), sulfur compound-chelating protein (soxZ), cytochrome c (soxA), sulfate thiol esterase (soxB), and thioredoxin (soxW) genes, complete cds; and unknown gene. ACCESSION AY074395 VERSION AY074395.1 KEYWORDS . SOURCE Chlorobium limicola ORGANISM Chlorobium limicola Bacteria; Chlorobiota; Chlorobiia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium. REFERENCE 1 (bases 1 to 7435) AUTHORS Verte,F., Kostanjevecki,V., De Smet,L., Meyer,T.E., Cusanovich,M.A. and Van Beeumen,J.J. TITLE Identification of a thiosulfate utilization gene cluster from the green phototrophic bacterium Chlorobium limicola JOURNAL Biochemistry 41 (9), 2932-2945 (2002) PUBMED 11863431 REFERENCE 2 (bases 1 to 7435) AUTHORS Verte,F., Kostanjevecki,V., De Smet,L., Meyer,T.E., Cusanovich,M.A. and Van Beeumen,J.J. TITLE Direct Submission JOURNAL Submitted (11-JAN-2002) Biochemistry, Physiology and Microbiology, University Gent, Ledeganckstraat 35, Gent, O-Vl 9000, Belgium FEATURES Location/Qualifiers source 1..7435 /organism="Chlorobium limicola" /mol_type="genomic DNA" /db_xref="taxon:1092" gene 649..1941 /gene="soxF2" CDS 649..1941 /gene="soxF2" /note="SoxF2" /codon_start=1 /transl_table=11 /product="flavoprotein" /protein_id="AAL68882.1" /translation="MGNTISRRSFNKLLFSGLAGSSLFMSGGPLMASVSKARVVVIGG GFGGATVARYLKKLDPAISVTLVEPKTVFHTCPMSNSVIGGLRSMQDIAHTYNVLRNR YGIEVVHDTATLIDPVKKSVRLKGGRSLAYDRLVVSPGVDFIWDAIEGYSREAGESKM PYAYEAGPQTLLLRRQLLAMKDGENVIICAPKNPFRCPAAPYERASLIAYYLKKNKPK SKVIILDDKEVFTKQDLFMLGWDRLYPGKIEWRSGSTGGKVERLDPAAMTVSTEFGDE KGGVINVIPPQRAGRIAIDAGLADASGWCPVNPANFESLLHPGIHVIGDAALVGTMPK SGTAANTQAKALAASLVASFGGPAAGQHDLANLCYSMLSPGYAISVAGGYIQSPEGIK DNPDSIHLTSMEATTAQLAGEAEQADNWYHNISQDTWD" gene 2035..2388 /gene="soxX" CDS 2035..2388 /gene="soxX" /note="SoxX" /codon_start=1 /transl_table=11 /product="cytochrome c" /protein_id="AAL68883.1" /translation="MKSSGIIAAAAILLLPSLGIAAAPAGESSVEKGKALALDTNKGN CIACHMMGDGEFPGNYGPPLIQMKERYPDRAALHKQIGDATIINPKSIMPPFGKHGIL NVSEIDQIVDYLYTL" gene 2459..2920 /gene="soxY" CDS 2459..2920 /gene="soxY" /note="SoxY" /codon_start=1 /transl_table=11 /product="sulfur covalently-binding protein" /protein_id="AAL68884.1" /translation="MGITRRDFCKSVAGSAASVAVLAFMPGNLLASWSEKAFSASKLD EAIAAKFGSLPIQESTAIQIKAPEIAENGAFVPVTVATSIPGATNISIFTPANFSPMV ASFDVLPRMKPEVSLRMRMAKTENLVVVVQAGGKLYRAVREVKVTIGGCGG" gene 2958..3263 /gene="soxZ" CDS 2958..3263 /gene="soxZ" /note="SoxZ" /codon_start=1 /transl_table=11 /product="sulfur compound-chelating protein" /protein_id="AAL68885.1" /translation="MKIKAVVQNDAVSVKMLIPHPMETGRRKEQNGTLVPHHFITEVT ATHNGQTVFHAELGPGVSKDPYLSFQFTGAKAGDMLKVSWVDNKGGSETAEAAITAM" gene 3288..4148 /gene="soxA" CDS 3288..4148 /gene="soxA" /note="SoxA" /codon_start=1 /transl_table=11 /product="cytochrome c" /protein_id="AAL68886.1" /translation="MKKTIQRGLFTGALVLLTAMTSKPAHAAVNYQALVDADVKKFQG YFLKEFPGVKLEDFGDGVYALDEDSRKQWKEMEEFPPYELDVEAGKALFNKPFANGKS LGSCFSNGGAVRGMYPYFDEKRKEVITLEMAINECRVANGEKPYAPKKGDIARVSAYI ASISRGQKIDVKVKSKAAYDAYMKGKEMFYAKRGQLNMSCSGCHMEYSGRHLRAEIIS PALGHTTHFPVFRSKWGEIGTLHRRYAGCNENIGAKPFPAQSKEYRDLEFFQTVMSNG LKFNGPASRK" CDS 4161..4481 /inference="non-experimental evidence, no additional details recorded" /note="Orf106" /codon_start=1 /transl_table=11 /product="unknown" /protein_id="AAL68887.1" /translation="MKKVLSLLSLLLLTPSASLLLAEPTAAPAVSSPLIDQAEAARKE ADALGYEWRDTGALIQSAKDALQKGQQAESDKLASQALFQARAATAQGQYMAKNWKMM IPKN" gene 4570..6324 /gene="soxB" CDS 4570..6324 /gene="soxB" /note="SoxB" /codon_start=1 /transl_table=11 /product="sulfate thiol esterase" /protein_id="AAL68888.1" /translation="MNLSRREFLRILGFAGAAGLLPGLASAAGSPSDLYDLGQSGDIR LLHITDTHAQLMPIYYREPSLNLGLGQAFGRPPHLVTESLLKYYGIAPGTPLAHAYTA INYAEAAQRFGKVGGFAHLKTLVDRMRSEYGSDKTLLLDGGDTWQGSGTAFWNRGMDM VEACNLLGVDVMTGHWEFTYLEEEVLKNLAAFKGDFVAQNIKVKEDALFNGAKAFDEN SGHAFRPYVVKAVGKHRVAVIGQAFPYTPIANPARFIPNWTFGINASDMQQLVDTVRS KKKPDAVVLISHNGMDVDVKLAQVVSGIDVIFGGHTHDGVPQPFVVQNAKGRTLVTNA GSNGKFLGVIDLKLGNGGVKEYNYKLLPVFSNELPAHNGMQALIDKTRAPYLDKLNEP LAVAGSLLYRRGNFDGPFDQIICNALRQQNDAQISLSPGFRWGTSILPGQTITMEHVL DQTCMTYPETYVRDMTGQQIKDILEDVADNLFNLDPFYQQGGDMVRTGGLSYRIDPMA SMGKRIDNMRLENGKVVDASQKYRVAGWATVGAKSPGEPVWDTVAAYLKDKKVVEVKK LNQPEFKNMGSNPGIDLT" gene 6525..7082 /gene="soxW" CDS 6525..7082 /gene="soxW" /note="SoxW" /codon_start=1 /transl_table=11 /product="thioredoxin" /protein_id="AAL68889.1" /translation="MKSIKKLFATSIVALSMIGALPATSASAAVPPASQAVAGKVAPA FRIKTLDGKELKSSQLAGRPYIVNFFASWCPPCREELPGMVALQKKYANKGFTFIGIA FRDRPATLPDFLWEMGVDYPVGLTTPELEAAFGKLMPGGKIRAIPATFVVGRDGKILN AVSGGLTREDFESLIIKAVNTRPVK" BASE COUNT 1614 a 2112 c 2074 g 1635 t ORIGIN 1 cgggtgagcg gcagggccgc cgacagggtt ctgatgactc ccgccagatg ttctccgatg 61 tcggttttgt cgttgctgta ccgtgaccag atatcgtctt cgtccatcat cagcgagtgg 121 gcgcatctca ttcccgcttc gatcattgaa gctcttgacg ggagctggtt ctgttgcgag 181 gcaggcgttg acggcacgga tgcttctccc ttgatgtgat tggcgcgaaa ggaattttcg 241 attacgatcg acggggcgct acggggagca caagagtcaa ccataatcac gttattaata 301 tagcgaacga tccagttttt ttcgctatat gacgatacat tccaattacg ccaattcggg 361 tttttgtgcg gcatcgattt cgtctgaacg ccccttgttc atgcagaatc acggcaaccg 421 ctcatttttc ttcacatttt tttctctttg acgcatttat gtgaagtgta aaaaagaggt 481 taagtcttgc atatttactc gtatttcatt atataactac ataatcatat atagcttacg 541 atgatttggt gctttgctgt tcgtctgagc aaaagtcttt tcaacgttat ggcagttagc 601 cccattcatt ccgagttttg catttaacgg taaatacctg attgcgttat gggaaatacg 661 atttctcgca ggagtttcaa caagttgctg ttttccggac ttgccggttc gtctctgttc 721 atgtctggcg ggcctcttat ggcctccgtt tcaaaagccc gcgtcgtcgt gattggcggg 781 ggatttggtg gcgctacagt cgcgcgctat ctcaaaaagc tggacccggc gatttcggtg 841 acgctggtag agccaaagac ggtgtttcat acctgtccga tgagcaactc ggttatcggc 901 gggcttcggt cgatgcagga tatcgcccat acctacaatg ttttacggaa tcgttacggc 961 atcgaagtcg tgcacgatac ggccacgctt atcgatcccg tgaagaaatc cgtgaggctg 1021 aagggaggtc gctcgctcgc gtatgatcgt ctcgtggtgt cgccgggcgt cgatttcatc 1081 tgggatgcca tcgaaggcta cagccgcgag gcgggagagt cgaagatgcc ttatgcgtat 1141 gaggctggtc cgcagacgct tctgttgcgc aggcagcttc ttgccatgaa agatggcgag 1201 aacgtgatca tctgcgctcc gaaaaatcct ttccgctgtc ccgcggctcc ttacgagcgg 1261 gcaagtctca tagcctacta tctgaaaaag aacaagccga aatcgaaggt catcattctc 1321 gacgacaagg aggtcttcac caagcaggat ctgttcatgc ttggctggga tcggctctat 1381 cccggcaaga tcgagtggcg atcgggctcg actggcggaa aggtcgagcg gctcgatccg 1441 gcggcgatga ccgtttcgac cgagttcggc gatgaaaagg gcggcgtcat caacgtcatt 1501 cctccgcagc gagctggccg catcgccatc gatgccgggc ttgccgacgc ttccggctgg 1561 tgcccggtca accccgcgaa cttcgaatcg cttctgcatc ccggcattca tgtgatcggc 1621 gatgcggctc tggtgggaac catgcccaag tcggggacgg cggccaatac ccaggccaag 1681 gcgctggccg cttcgcttgt cgcttcgttc ggcggccctg ctgccggcca gcacgatctg 1741 gccaacctct gttacagcat gctctctccc ggttacgcaa tctccgttgc aggcggctac 1801 atccaaagcc cggaaggcat caaggacaat cccgactcca tccatctcac ctcgatggag 1861 gcgaccaccg ctcaactggc cggcgaggcc gaacaggcgg ataactggta tcacaacatt 1921 tcgcaggata cctgggattg agcttttagc gtagcggcgc gcggttttgc cgcgggtgat 1981 cgcggatttt ttttactcac gcaggatttc aactcactaa acaagagagg acatatgaag 2041 tcttcaggca ttatcgcggc ggcggccatt cttctgctgc catctctcgg catcgcggca 2101 gctccggcgg gcgagtcttc cgtcgagaag ggcaaggcgc tggcgctcga tacgaacaag 2161 ggcaattgca tcgcctgcca catgatgggc gatggagagt tccccggcaa ttacggcccg 2221 cccctcatcc agatgaaaga gcgttatcca gaccgggcgg cgcttcataa acagatcggg 2281 gatgcgacga ttatcaatcc gaagagcatc atgcctccat tcggaaagca cggcattctg 2341 aacgtttccg agatcgatca gatcgtcgat tatctctata cgctctgagt tcaccttttt 2401 taagacaagg ccccgcgcgg ggtcaaacca ataacactct tttttttagg aggctcccat 2461 gggtattacc cgcagagatt tttgtaaatc ggtagccggt tcggcggcat ctgtcgcggt 2521 gcttgcattc atgcccggca atcttctggc gagctggagc gagaaagctt tttctgccag 2581 caagctcgat gaggccatcg cagcgaagtt cggttcgctt ccgatccagg aatcaacggc 2641 aatccagatc aaggctcccg agatcgccga gaacggcgct ttcgtgccag taacggtagc 2701 gaccagtatt cccggcgcga ccaatatcag cattttcact ccggcaaact tcagcccgat 2761 ggtggcttcg ttcgacgtgc tgccgcgcat gaagcccgag gtttcgcttc gcatgaggat 2821 ggccaagacc gaaaatctcg tcgtcgtcgt ccaggcgggc ggcaagctct accgggcggt 2881 tcgcgaagtc aaggtgacca tcggcggctg tggcggataa tcgataacca ttcaaaacac 2941 atttcaggag tgaaataatg aaaatcaaag cagtagtcca gaatgacgcc gtctcggtca 3001 aaatgctcat cccgcatccg atggagaccg gccgccgcaa agagcagaac ggtacgcttg 3061 tcccgcacca tttcatcacc gaggtgacgg ccactcacaa cggccagacc gttttccatg 3121 ccgaactcgg ccccggcgtc tcgaaagatc cctatctgtc tttccagttc accggcgcca 3181 aggcaggcga catgctgaag gtctcctggg ttgacaacaa aggcggttcc gaaaccgctg 3241 aggcagccat tacggcgatg taattccaac cacaggagaa cccatccatg aaaaaaacaa 3301 ttcagcgagg gctgtttacc ggcgcgctcg ttctcttgac agccatgacg tcgaagccgg 3361 ctcacgccgc cgtcaattac caggctctgg tcgatgcgga tgtcaaaaaa ttccagggct 3421 attttctcaa ggagtttccg ggcgtgaagc ttgaggactt cggcgatggc gtttacgctc 3481 tcgatgagga ttcccgcaag cagtggaagg agatggagga gtttccgcct tatgaactcg 3541 atgtcgaggc gggcaaggcg ctcttcaaca agcccttcgc caatggcaaa tcgctgggga 3601 gctgcttttc gaacggggga gccgtgcgcg gcatgtatcc ctacttcgac gagaagcgca 3661 aagaggtgat aacgctcgaa atggccatca acgagtgccg cgtggccaat ggcgaaaaac 3721 cctatgcccc gaaaaaaggg gacattgcca gggtttcggc ctacatcgcc tcgatcagcc 3781 gcggccagaa aatcgatgtc aaggtgaaga gcaaggcggc ttacgacgcc tacatgaagg 3841 gcaaggagat gttttacgcc aagcgcgggc aactcaacat gtcgtgctcc ggctgccaca 3901 tggagtattc cggacgtcac ctgagggccg aaatcatcag cccggcgctc ggacacacca 3961 cgcacttccc ggtgttccgc tcgaaatggg gcgaaatcgg caccttgcac agacgctacg 4021 ccggttgcaa cgaaaacatc ggagccaagc cgttccctgc gcagagcaaa gagtatcgcg 4081 atctggaatt tttccagacg gtcatgtcaa acggcctgaa gttcaatggc ccggcatcaa 4141 gaaaataaga agaagaaacc atgaaaaaag tgttatcgct cttgagcttg ctgctactca 4201 cgccttccgc ttcattgctg ctggccgaac caacggcggc tccggcggtc tcttcgccgc 4261 tgatcgacca ggcagaggcg gcgcgcaagg aggcggacgc gctcggttac gagtggcgtg 4321 atacgggcgc attgattcag tccgccaagg atgcgctcca gaaaggccag caggcggagt 4381 ccgacaaact cgcttcgcaa gcgcttttcc aggcccgcgc ggcgacagcg cagggccagt 4441 acatggcaaa gaactggaag atgatgattc ccaaaaactg atttccgtcg ggatgtcggc 4501 tgagcccctc accgacgtcc cgatcttcat tgatcagtag ttttacggca acccaaaccg 4561 ccccgattca tgaacctatc ccgtcgtgag tttctccgca ttctcggatt tgccggagcc 4621 gcaggccttc tgcctgggct ggcttccgcg gcaggcagcc cctccgatct ttatgatctc 4681 ggtcagtccg gcgacattcg cttgttgcac atcacggata cccatgccca gctcatgccg 4741 atctactacc gtgaacccag cctgaacctc gggctcggcc aggcattcgg acgtcctcct 4801 cacctcgtga cggagtcgct cttgaaatat tacggcatcg cacctggtac gccgctcgca 4861 catgcctata ccgcgatcaa ctatgccgag gcggcgcagc ggttcggaaa ggttggcggt 4921 ttcgcgcatc tgaagacgct cgttgaccgg atgcgttcgg agtacggatc cgacaagacc 4981 ctcctgctcg atggcggcga cacctggcag ggttcgggaa cagcgttctg gaatcgcggc 5041 atggacatgg tcgaggcctg caatttgctc ggcgtcgatg tgatgacggg tcactgggag 5101 ttcacctatc tcgaagagga ggtactcaaa aacctcgcgg ctttcaaggg cgacttcgtg 5161 gcgcagaata tcaaggtcaa ggaggatgcg ctcttcaacg gagccaaggc gttcgacgag 5221 aattccggac acgccttccg tccctacgtg gtcaaagcgg tgggcaagca ccgcgtcgcc 5281 gtgattggcc aggcgtttcc ctacacgccg atcgccaatc ccgcccgctt cattccgaac 5341 tggaccttcg gcatcaatgc cagcgacatg cagcagcttg tcgataccgt tcgctccaag 5401 aagaagcctg acgcggtcgt gctgatctcg cacaacggga tggatgttga cgtcaagctc 5461 gcgcaggtgg tcagcggcat cgacgtgatt ttcggcggcc acacccatga cggcgtaccg 5521 cagcccttcg tcgtgcagaa cgccaagggg cgaacgctcg tcaccaacgc cggatcgaac 5581 ggcaaattcc tcggcgtcat cgacctcaag ctcggcaatg gcggcgtcaa ggagtataat 5641 tacaagttgc ttcccgtctt ttccaacgaa cttccggcgc acaacgggat gcaggcgctg 5701 atcgacaaaa cccgcgcacc ctacctcgac aagctcaacg agccactcgc cgtggccgga 5761 tcgctgctct accggcgcgg caatttcgac ggcccgttcg accagatcat ctgcaacgcg 5821 cttcgccagc agaacgacgc gcagatttcg ctttcgcccg gcttccgctg gggtacgagc 5881 attttgcccg gccagaccat cacgatggag cacgtgctcg accagacctg catgacctat 5941 cccgaaacct acgtgcgcga catgaccggc cagcagatca aggacattct cgaagacgtg 6001 gccgacaacc ttttcaatct cgatcccttc taccagcagg gcggcgacat ggtgcgcacc 6061 ggcggtctga gctatcggat cgatccgatg gcctcgatgg gcaagcgcat cgacaacatg 6121 cggctcgaaa acggcaaggt ggtggatgct tcgcaaaagt accgtgttgc aggctgggcg 6181 accgtgggcg caaagtcgcc gggcgagccg gtttgggata ccgtggccgc ttatctgaaa 6241 gataaaaagg tggtcgaagt gaaaaagctc aaccagcccg aattcaaaaa catgggcagc 6301 aatccgggaa tcgatctcac ctgaggcgaa gatcgtcagc ggacaaggct gttgcagaag 6361 cgaaaccgcg actgattccc gtttctgtcc tgaacggagg gctggaatgt gcacccttcg 6421 tcagccaaca gatttttgct tttgagaact ccgtttgctt tttttctgaa agagcctgtt 6481 gacggacttc gtttgttttg aaaagctcaa tccatgaatg gttcatgaaa tccattaaaa 6541 aattgttcgc cacctcaatc gtggcgcttt cgatgattgg cgcgcttccg gcaacaagcg 6601 cgagcgcggc ggttcctccc gcgagccagg ccgtcgcggg caaagtcgcc ccggcgttcc 6661 ggatcaaaac gctcgacggc aaggagttga agagttcgca gcttgccgga cggccctaca 6721 tcgtcaactt tttcgcctcg tggtgcccgc cctgccgtga ggagctgccc ggcatggtgg 6781 cattgcagaa aaagtatgca aacaagggct tcacttttat cggcatcgct tttcgggatc 6841 gccccgcgac gctgcccgat tttctctggg agatgggggt cgactatccg gtcggcctca 6901 ccactcctga actcgaagcc gcgtttggca agctcatgcc gggcggaaaa atccgcgcga 6961 ttccggcaac cttcgtcgtt ggccgcgatg gcaagattct caatgccgtg agtggcggcc 7021 tcaccagaga ggacttcgag tcgctcatca tcaaggcggt caacaccaga cctgtaaagt 7081 aagctcacga agcgaggctt cccggatttc cctctccctc gaccctgccc gaacatcctc 7141 tccatctcct ccattcgctg aaccggccca gagagagcgc cggttcagcg attcttgctt 7201 tatgcgtggc gatcatttgc agccggccat cacggagctg tcaggcaaaa tggcttttcc 7261 gcgccggcgc tgtttcttgt ttggttttgt agttcatatt aaatatattc atttgtttga 7321 taaacgattt ggttatatag ttaaatcgtt gattttaagg cagtgacagg tttctgtttc 7381 caaggctgtt tgggcgttat gcgcgcaggc tgtgcgcgga gagctgaaaa agctt //