LOCUS AY050977 1280 bp mRNA linear PLN 18-SEP-2002 DEFINITION Arabidopsis thaliana unknown protein (At2g17340) mRNA, complete cds. ACCESSION AY050977 VERSION AY050977.1 KEYWORDS FLI_CDNA. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1280) AUTHORS Yamada,K., Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K., Goldsmith,A.D., Lee,J.M., Quach,H.L., Toriumi,M., Yu,G., Bowser,L., Carninci,P., Chen,H., Cheuk,R., Hayashizaki,Y., Ishida,J., Jones,T., Kamiya,A., Karlin-Neumann,G., Kawai,J., Kim,C., Lam,B., Lin,J., Miranda,M., Narusaka,M., Nguyen,M., Palm,C.J., Sakurai,T., Satou,M., Seki,M., Shinn,P., Southwick,A., Shinozaki,K., Davis,R.W., Ecker,J.R. and Theologis,A. TITLE Arabidopsis Full Length cDNA Clones JOURNAL Unpublished REFERENCE 2 (bases 1 to 1280) AUTHORS Yamada,K., Liu,S.X., Pham,P.K., Banh,J., Banno,F., Dale,J.M., Goldsmith,A.D., Jiang,P.X., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C., Toriumi,M., Yamamura,Y., Yu,G., Yu,S., Bowser,L., Carninci,P., Chen,H., Cheuk,R., Hayashizaki,Y., Ishida,J., Jones,T., Kamiya,A., Karlin-Neumann,G., Kawai,J., Kim,C., Koesema,E., Lam,B., Lin,J., Meyers,M.C., Miranda,M., Narusaka,M., Nguyen,M., Palm,C.J., Sakurai,T., Satou,M., Seki,M., Shinn,P., Southwick,A., Tracy,S.E., Shinozaki,K., Davis,R.W., Ecker,J.R. and Theologis,A. TITLE Direct Submission JOURNAL Submitted (07-AUG-2001) Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA COMMENT RIKEN Genomic Sciences Center (GSC) members carried out the collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J., Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J., Hayashizaki,Y. and Shinozaki,K. The Salk, Stanford, PGEC (SSP) Consortium members carried out the sequencing and annotation of the RAFL cDNAs: Yamada,K., Liu,S.X., Pham,P.K., Banh,J., Banno,F., Dale,J.M., Goldsmith,A.D., Jiang,P.X., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C., Toriumi,M., Yamamura,Y., Yu,G., Yu,S., Bowser,L., Chen,H., Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Koesema,E., Lam,B., Lin,J., Meyers,M.C., Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., Southwick,A., Tracy,S.E., Davis,R.W., Ecker,J.R. and Theologis,A. Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC) contributed equally to this work as PIs. Annotation is based on the January 2002 version of the Arabidopsis genome submitted to GenBank. FEATURES Location/Qualifiers source 1..1280 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="2" /clone="RAFL08-14-M16 (R11289)" /ecotype="Columbia" /note="This clone is in a modified pBluescript vector (FLC-1) as a BamHI/XhoI insert." gene 1..1280 /gene="At2g17340" 5'UTR 1..25 /gene="At2g17340" misc_difference 3 /gene="At2g17340" /note="not present in genomic sequence" CDS 26..1129 /gene="At2g17340" /experiment="experimental evidence, no additional details recorded" /codon_start=1 /product="unknown protein" /protein_id="AAK93654.1" /translation="MESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEIS WINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGIL LCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIF AGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIF VDNSGADIILGILPFARELLRRGAQVVLAANELPSINDITCTELTEILSQLKDENGQL LGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIETNLYAQFKC DSLKIGMVKHLEVAEFLGGRLYDCVFKFNEVQS" 3'UTR 1130..1280 /gene="At2g17340" misc_difference 1264 /gene="At2g17340" /note="not present in the genomic sequence" BASE COUNT 385 a 235 c 285 g 375 t ORIGIN 1 tggaagatca tcacaagcaa agaaaatgga gagcgattca gagatggttc cgtttcctca 61 actaccgatg ccaatagaaa acaactacag agcttgcaca attccttaca gatttccttc 121 tgatgatccc aagaaagcca ctccaaatga aatctcgtgg atcaacgtct tcgccaattc 181 cattccttct ttcaagaaac gtgcagagag cgatatcact gttccagatg ctcctgctag 241 agctgaaaaa tttgcagaaa gatatgctgg gattcttgaa gacttgaaga aagatccaga 301 gagtcatggc ggaccaccag atggcattct tctatgccga cttcgtgagc aagtactcag 361 agagttagga tttagggaca tattcaagaa agttaaggat gaggagaatg caaaggctat 421 atcactattt cctcaagttg tcagtctgag tgatgctatt gaagatgacg gaaaacggtt 481 agagaatttg gtgagaggga tatttgctgg aaacatcttt gatcttggtt ctgcacagct 541 tgctgaagtt ttctcaaggg atggtatgtc tttcttggct agctgtcaaa acttggttcc 601 acgaccatgg gtcattgatg acttggaaaa cttccaagcc aaatggatca ataagtcttg 661 gaagaaggca gtgatttttg ttgataattc tggtgcagac ataattttgg gtattttgcc 721 gtttgcaaga gagttgctcc gtcgaggagc tcaggtggtg ctggctgcta atgagctgcc 781 atctatcaat gacataacat gtaccgagct tacagaaatc ttgtcacagt tgaaggatga 841 aaatggccaa ttgctaggtg ttgatacttc gaagcttctg attgcaaatt cggggaatga 901 cttaccagtt atcgatctct caagagtatc acaggagctt gcttaccttt catctgatgc 961 cgacttagtc atcgtagaag gcatgggtcg tggaattgag acaaaccttt atgctcagtt 1021 caagtgtgat tctctcaaga ttggaatggt gaagcatctt gaagtagcag agtttctcgg 1081 aggacggctc tatgactgtg tcttcaaatt caatgaagtt cagagctaat tagtatttca 1141 gtactctcca gtctcacttc tctcttactg tcatttttaa ttcaaaacat agggtacaaa 1201 aagtaatatt tttccatctt gatatggtaa atcaatttga aacaaaaata tttattcgtt 1261 tgttaaaaaa aaaaaaaaaa //