LOCUS AY035088 1324 bp mRNA linear PLN 18-SEP-2002 DEFINITION Arabidopsis thaliana putative casein kinase II catalytic alpha subunit (At2g23080) mRNA, complete cds. ACCESSION AY035088 VERSION AY035088.1 KEYWORDS FLI_CDNA. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1324) AUTHORS Yamada,K., Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K., Goldsmith,A.D., Lee,J.M., Quach,H.L., Toriumi,M., Yu,G., Bowser,L., Carninci,P., Chen,H., Cheuk,R., Hayashizaki,Y., Ishida,J., Jones,T., Kamiya,A., Karlin-Neumann,G., Kawai,J., Kim,C., Lam,B., Lin,J., Miranda,M., Narusaka,M., Nguyen,M., Palm,C.J., Sakurai,T., Satou,M., Seki,M., Shinn,P., Southwick,A., Shinozaki,K., Davis,R.W., Ecker,J.R. and Theologis,A. TITLE Arabidopsis Full Length cDNA Clones JOURNAL Unpublished REFERENCE 2 (bases 1 to 1324) AUTHORS Yamada,K., Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K., Goldsmith,A.D., Lee,J.M., Quach,H.L., Tang,C.C., Toriumi,M., Yu,G., Bowser,L., Carninci,P., Chen,H., Cheuk,R., Hayashizaki,Y., Ishida,J., Jones,T., Kamiya,A., Karlin-Neumann,G., Kawai,J., Kim,C., Koesema,E., Lam,B., Lin,J., Meyers,M.C., Miranda,M., Narusaka,M., Nguyen,M., Palm,C.J., Sakurai,T., Satou,M., Seki,M., Shinn,P., Southwick,A., Shinozaki,K., Davis,R.W., Ecker,J.R. and Theologis,A. TITLE Direct Submission JOURNAL Submitted (03-MAY-2001) Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA COMMENT RIKEN Genomic Sciences Center (GSC) members carried out the collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J., Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J., Hayashizaki,Y. and Shinozaki,K. The Salk, Stanford, PGEC (SSP) Consortium members carried out the sequencing and annotation of the RAFL cDNAs: Yamada,K., Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K., Goldsmith,A.D., Lee,J.M., Quach,H.L., Tang,C.C., Toriumi,M., Yu,G., Bowser,L., Chen,H., Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Koesema,E., Lam,B., Lin,J., Meyers,M.C., Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., Southwick,A., Davis,R.W., Ecker,J.R. and Theologis,A. Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC) contributed equally to this work as PIs. Annotation is based on the January 2002 version of the Arabidopsis genome submitted to GenBank. FEATURES Location/Qualifiers source 1..1324 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="2" /clone="RAFL09-16-F02 (R09214)" /ecotype="Columbia" /note="This clone is in a modified pBluescript vector (FLC-1) as a BamHI/XhoI insert." gene 1..1324 /gene="At2g23080" 5'UTR 1..107 /gene="At2g23080" CDS 108..1109 /gene="At2g23080" /experiment="experimental evidence, no additional details recorded" /codon_start=1 /product="putative casein kinase II catalytic alpha subunit" /protein_id="AAK59593.1" /translation="MSKARVYTDVNVVRPKEYWDYESLVVQWGHQDDYEVVRKVGRGK YSEVFEGKNVNTNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLYDIVRDEHSK TPSLVFEFVNSVDFKVLYPTLTDYDIRYYIYELLKALDFCHSQGIMHRDVKPHNVMID HQLRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFA GMIFRKEPFFYGHDNHDQLVKIAKVLGTNELDHYLNKYQLDLDPQLEALVGRHVPKPW SKFINADNQHLVSPEAIDFLDKLLQYDHQDRLTAREAMDHPYFAQVKAAESSRLRTQ" misc_difference 260 /gene="At2g23080" /note="compared to genomic sequence" /replace="c" 3'UTR 1110..1324 /gene="At2g23080" misc_difference 1307..1308 /gene="At2g23080" /note="not present in genomic sequence" BASE COUNT 436 a 239 c 265 g 384 t ORIGIN 1 acaacgcact tcttctgttg tcatcatcat cgtccacttg aaacaaacct gacgatcaaa 61 gagaagattg cgatcgcaaa tttctccatt ttttcagatc gaaattgatg tcgaaagcta 121 gggtttatac agatgttaac gttgttcgtc ctaaagagta ttgggactac gagtctctcg 181 ttgttcaatg gggtcatcaa gatgattatg aggttgtgag aaaagttggt agaggaaaat 241 acagtgaagt tttcgaaggt aaaaacgtca atacgaatga gcgttgcgtt atcaagatcc 301 tcaaacccgt aaaaaagaag aagataaaga gagagatcaa aatacttcag aacctatgtg 361 gtggaccaaa tattgttaag ctgtatgata ttgttagaga tgagcactcc aaaacaccta 421 gcttggtatt tgagtttgtc aacagtgtgg actttaaagt attgtatcca acattgactg 481 attacgatat ccggtactat atttatgagc ttctgaaggc attggatttc tgtcactctc 541 aaggaataat gcatagggat gttaagcctc ataatgtcat gatagatcat cagctgcgta 601 aacttcgtct gatagattgg ggccttgctg agttttacca tcccggaaaa gagtataatg 661 ttcgcgtggc ctcgagatac ttcaagggtc ccgagctttt agttgatcta caggattatg 721 actattcttt agacatgtgg agtcttggtt gcatgtttgc tggcatgata ttccgtaagg 781 aaccgttctt ttatggccat gataatcatg atcaacttgt caaaattgcc aaggtgttgg 841 gaaccaatga gttagatcat tacctaaaca aatatcagct agatcttgac cctcaactgg 901 aagcacttgt tggaagacat gtccccaaac catggtccaa gtttatcaac gcggacaacc 961 aacatttggt ctcacctgag gcaattgatt ttctcgataa gcttcttcag tatgatcatc 1021 aagacagatt aaccgcaaga gaagccatgg atcatccata cttcgctcaa gttaaagccg 1081 cagagagcag cagactacga actcagtaaa accgaagctt gattgatgat gcttactact 1141 atttttcaac caaaaacttt gtaatgattt tgttgtatca aaattgtggt aatctttact 1201 ttcatagaaa cataatcaac agcgaaaaga agccaactta tattaaaaaa aaaggttcca 1261 cacaaagctt cattatataa tcatagcaag agacttattg ttgaaaataa aaaaaaaaaa 1321 aaaa //