LOCUS AY013791 2382 bp mRNA linear ROD 28-APR-2001 DEFINITION Mus musculus protocadherin beta 9 mRNA, complete cds. ACCESSION AY013791 VERSION AY013791.1 KEYWORDS . SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2382) AUTHORS Wu,Q. and Maniatis,T. TITLE A striking organization of a large family of human neural cadherin-like cell adhesion genes JOURNAL Cell 97 (6), 779-790 (1999) PUBMED 10380929 REFERENCE 2 (bases 1 to 2382) AUTHORS Wu,Q. and Maniatis,T. TITLE Large exons encoding multiple ectodomains are a characteristic feature of protocadherin genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (7), 3124-3129 (2000) PUBMED 10716726 REFERENCE 3 (bases 1 to 2382) AUTHORS Wu,Q., Zhang,T., Cheng,J.-F., Kim,Y., Grimwood,J., Schmutz,J., Dickson,M., Noonan,J.P., Zhang,M.Q., Myers,R.M. and Maniatis,T. TITLE Comparative DNA sequence analysis of mouse and human protocadherin gene clusters JOURNAL Genome Res. 11 (3), 389-404 (2001) PUBMED 11230163 REFERENCE 4 (bases 1 to 2382) AUTHORS Wu,Q., Zhang,T., Cheng,J.-F., Kim,Y., Grimwood,J., Schmutz,J., Dickson,M., Noonan,J.P., Zhang,M.Q., Myers,R.M. and Maniatis,T. TITLE Direct Submission JOURNAL Submitted (13-NOV-2000) Molecular and Cellular Biology, Harvard University, 7 Divinity Avenue, Cambridge, MA 02138, USA FEATURES Location/Qualifiers source 1..2382 /organism="Mus musculus" /mol_type="mRNA" /db_xref="taxon:10090" /chromosome="18" /map="18C" /tissue_type="brain" CDS 1..2382 /codon_start=1 /product="protocadherin beta 9" /protein_id="AAK26080.1" /translation="MEKLGRIHLNRQVMAFIFMMVLVQVCSEPTIRYSILEETESGSF VAHLAKDLGLGARELAARSARVLSDDYKQRLLLDPETGDLLLREKVDREEVCSTVDPC VLHFQVTLEKPVQYFQRELLIQDINDHAPEFPDRELLLRIPENSQQGTQFSLNLAQDL DVGSNGLQQYTVSPNPYFHVLTQNNSKGKKYPELVQDRGLDREEQAELSLTLTALDGG SPPRSGTALVRILIMDINDNAPEFVNSPYEVQVLESSPPDSPVLTVLARDADAGNFGR VSYGFFQASDEIQQTFSINATSGDMRLKKKLDFEKIKSYHVEIEAIDGGGLSGKGSVT IEVVDVNDNAPELTISSLTSSVPENAPETIISIFRVGDRDSGENGKMVCSIPENLPFI LKSTFKNFYTLVTESPLDRESRAEYNITIMVSDMGTPRLTTWHTIKVQVSDINDNTPA FTQTSYTMFVRENNSPALHIGTISATDSDSGSNAHITYSLLPPHDPELALSSLISINA DNGQLFALRALDYEALQVFEFHVGATDGGSPPLSSQALVRVVVLDDNDNAPFVLYPMQ NASAPFTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEV RTTRLLSERDVPKHRLLLVVKDNGEPQRSASVTLQVLLVDGFSQSYLPLPEVARDPAH EDEDVLTLYLVIALASVSSLFLLSVLLFVGVRLCRRAREVSLGGCSMPGEHFPGHLVD VSGAGTLSQSYQYEVCLRGDSGTGEFKFLKPMIPNAGIEIMESPHCRDSFVFN" BASE COUNT 594 a 598 c 631 g 559 t ORIGIN 1 atggagaagc tggggagaat tcacctaaac aggcaagtaa tggcatttat ttttatgatg 61 gttttggttc aggtttgcag tgagccaaca attcgatact ctatcttaga ggaaacagaa 121 agtggctcct ttgtagccca cctggccaag gatctgggtc tgggagctag ggagctggct 181 gccaggtctg cacgggtgtt gtctgatgat tacaagcaga gattactgct ggatcctgag 241 actggagatt tgcttctgag ggagaaagta gaccgggagg aggtgtgtag cactgtggat 301 ccctgtgtgc tgcatttcca ggtgactctt gaaaagccag tgcaatattt tcaaagagaa 361 ttattgatcc aggacataaa tgatcatgct ccagaattcc cagatagaga actgctcttg 421 agaataccag agaacagcca gcaaggcaca caattttcac tgaatttagc ccaggacttg 481 gatgtgggca gcaatgggct tcaacaatac acagtcagcc ccaaccctta ttttcacgtc 541 ctcactcaaa ataatagtaa aggcaaaaaa tacccagagt tggtgcagga cagaggcctg 601 gacagagagg agcaggcaga gctgagctta accctcacag ctctggatgg cgggtctcca 661 ccgaggtcag gaacagccct ggttcgaatc ctgatcatgg atatcaatga caatgctcct 721 gagtttgtga acagtcccta tgaggtgcag gtcctagaga gcagtcctcc agactcccca 781 gtcttgactg tcttagcacg ggatgcagat gctggcaact ttgggagagt ttcctatggc 841 ttctttcaag catcagatga aatccaacaa acattctcaa taaacgcaac tagtggagac 901 atgcgattga aaaagaaatt ggattttgaa aaaattaaat cttaccatgt ggaaatcgag 961 gccatagatg gaggtgggct ttctgggaaa ggctctgtaa cgatagaggt ggtggatgtg 1021 aatgacaatg ccccagagct gaccatatct tcactgacca gctctgtccc agaaaatgct 1081 cctgagacga tcataagcat cttcagagtt ggggacaggg attccggaga gaatggaaag 1141 atggtttgtt ctattccaga gaatctgcca tttattctga aatccacctt caagaacttc 1201 tacaccctgg tgacagagag ccctctggac agagaaagca gagctgagta caatatcacc 1261 atcatggtct ctgacatggg cacacccagg ctcacaacat ggcacaccat aaaggtgcag 1321 gtgtccgaca tcaacgacaa cacccccgcc ttcacccaaa cctcctacac catgtttgtc 1381 cgcgagaaca acagccctgc cctgcacata ggcaccatca gtgccacaga ctcagactca 1441 ggctccaatg cccacatcac ctactcgctg ctgccgcccc atgatccgga actggccctc 1501 tcttcgttaa tctcgattaa cgctgacaat gggcagctgt ttgcactcag ggcgctggac 1561 tatgaggccc tgcaggtctt cgagttccac gtgggcgcca cagatggagg ctcacctcca 1621 cttagcagcc aggctctggt gcgcgtggtg gtgctggatg acaatgacaa tgcgcccttc 1681 gtgctctacc ctatgcagaa cgcctcggct cccttcactg agctgctgcc tagagctgcg 1741 gagccaggct acctggtcac caaggtggtt gcagtggacc gcgactctgg ccagaatgcc 1801 tggctatcct tccagttgct caaggccacg gaacctgggc tgttcagcgt gtgggcgcac 1861 aatggagagg tgcgcaccac caggttgttg agtgagcgcg atgtgcccaa gcacaggcta 1921 ctgctggtgg tcaaggacaa tggagagcct cagcgctctg ccagtgtcac tctgcaggtg 1981 ctgttagtgg atggcttctc acaatcttac ttacctcttc cagaggtagc gcgggatccc 2041 gcccatgaag atgaggacgt gcttacattg tacctggtca ttgccttggc atctgtgtct 2101 tctctcttcc tcctgtctgt gctgctgttt gtgggggtaa gactgtgcag aagggccaga 2161 gaggtctctc tgggtggctg ctctatgcct ggtgaacact ttcctggcca cctggtcgat 2221 gtcagtggag cagggaccct gtcccaaagc taccagtatg aggtgtgtct gaggggcgac 2281 tctgggactg gtgagttcaa gttcctgaaa cccatgatcc ccaatgctgg gatagaaatt 2341 atggaaagtc cccactgcag ggatagcttt gtattcaact aa //